track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.assembly.bb type bigBed 6 html html/GCA_001624675.1_NOD_ShiLtJ_v1.assembly searchIndex name searchTrix ixIxx/GCA_001624675.1_NOD_ShiLtJ_v1.assembly.ix url http://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database group map track gap longLabel AGP gap shortLabel Gap (AGP defined) visibility dense color 0,0,0 bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.gap.bb type bigBed 4 group map html html/GCA_001624675.1_NOD_ShiLtJ_v1.gap track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.gc5Base.bw html html/GCA_001624675.1_NOD_ShiLtJ_v1.gc5Base track repeatMasker compositeTrack on shortLabel RepeatMasker longLabel Repeating Elements by RepeatMasker group varRep visibility dense type bed 3 . noInherit on html html/GCA_001624675.1_NOD_ShiLtJ_v1.repeatMasker track repeatMaskerSINE parent repeatMasker shortLabel SINE longLabel SINE Repeating Elements by RepeatMasker priority 1 spectrum on maxWindowToDraw 10000000 colorByStrand 50,50,150 150,50,50 type bigBed 6 + bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.rmsk.SINE.bb track repeatMaskerLINE parent repeatMasker shortLabel LINE longLabel LINE Repeating Elements by RepeatMasker priority 2 spectrum on maxWindowToDraw 10000000 colorByStrand 50,50,150 150,50,50 type bigBed 6 + bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.rmsk.LINE.bb track repeatMaskerLTR parent repeatMasker shortLabel LTR longLabel LTR Repeating Elements by RepeatMasker priority 3 spectrum on maxWindowToDraw 10000000 colorByStrand 50,50,150 150,50,50 type bigBed 6 + bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.rmsk.LTR.bb track repeatMaskerDNA parent repeatMasker shortLabel DNA longLabel DNA Repeating Elements by RepeatMasker priority 4 spectrum on maxWindowToDraw 10000000 colorByStrand 50,50,150 150,50,50 type bigBed 6 + bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.rmsk.DNA.bb track repeatMaskerSimple parent repeatMasker shortLabel Simple longLabel Simple Repeating Elements by RepeatMasker priority 5 spectrum on maxWindowToDraw 10000000 colorByStrand 50,50,150 150,50,50 type bigBed 6 + bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.rmsk.Simple.bb track repeatMaskerLowComplexity parent repeatMasker shortLabel Low Complexity longLabel Low Complexity Repeating Elements by RepeatMasker priority 6 spectrum on maxWindowToDraw 10000000 colorByStrand 50,50,150 150,50,50 type bigBed 6 + bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.rmsk.Low_complexity.bb track repeatMaskerSatellite parent repeatMasker shortLabel Satellite longLabel Satellite Repeating Elements by RepeatMasker priority 7 spectrum on maxWindowToDraw 10000000 colorByStrand 50,50,150 150,50,50 type bigBed 6 + bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.rmsk.Satellite.bb track repeatMaskerRNA parent repeatMasker shortLabel RNA longLabel RNA Repeating Elements by RepeatMasker priority 8 spectrum on maxWindowToDraw 10000000 colorByStrand 50,50,150 150,50,50 type bigBed 6 + bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.rmsk.RNA.bb track repeatMaskerOther parent repeatMasker shortLabel Other longLabel Other Repeating Elements by RepeatMasker priority 9 spectrum on maxWindowToDraw 10000000 colorByStrand 50,50,150 150,50,50 type bigBed 6 + bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.rmsk.Other.bb track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.simpleRepeat.bb html html/GCA_001624675.1_NOD_ShiLtJ_v1.simpleRepeat track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bed 3 . noInherit on html html/GCA_001624675.1_NOD_ShiLtJ_v1.cpgIslands track cpgIslandExt parent cpgIslands shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) priority 1 type bigBed 4 + bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) priority 2 type bigBed 4 + bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.windowMasker.bb html html/GCA_001624675.1_NOD_ShiLtJ_v1.windowMasker track allGaps shortLabel All Gaps longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps group map visibility dense type bigBed 3 bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.allGaps.bb html html/GCA_001624675.1_NOD_ShiLtJ_v1.allGaps track augustus shortLabel Augustus longLabel Augustus Gene Predictions group genes visibility dense color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.augustus.bb html html/GCA_001624675.1_NOD_ShiLtJ_v1.augustus track gapOverlap shortLabel Gap Overlaps longLabel Exactly identical sequence on each side of a gap group map visibility hide type bigBed 12 . bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.gapOverlap.bb html html/GCA_001624675.1_NOD_ShiLtJ_v1.gapOverlap track ensGene shortLabel Ensembl genes longLabel Ensembl genes v86 group genes priority 40 visibility pack color 150,0,0 type bigBed 12 . bigDataUrl bbi/GCA_001624675.1_NOD_ShiLtJ_v1.ensGene.bb searchIndex name searchTrix ixIxx/GCA_001624675.1_NOD_ShiLtJ_v1.ensGene.name.ix html html/GCA_001624675.1_NOD_ShiLtJ_v1.ensGene include rnaSeqData/GCA_001624675.1_NOD_ShiLtJ_v1.trackDb.txt include GCA_001624675.1_NOD_ShiLtJ_v1.bigMaf.trackDb.txt