This directory contains Genome Browser and Blat application binaries built for standalone command-line use on various supported Linux and UNIX platforms. To determine which set of binaries to download, type "uname -a" on the command line to display your machine type. In most cases the usage statement for the application can be viewed by running the binary with no arguments. **Note about 'permission denied' error** In order for your computer to run a freshly downloaded utility, you will need to update the file system permissions to allow your operating system to run the program. $ chmod +x ./filePath/utility_name $ ./filePath/utility_name See also: http://en.wikipedia.org/wiki/Chmod Some of these applications are able to connect to UCSC's public MySQL server. Such applications require an .hg.conf file to be present in the user's home directory. For more information and an example .hg.conf file, see: http://genome.ucsc.edu/goldenPath/help/mysql.html You can access the source code through GitHub: https://github.com/ucscGenomeBrowser/kent/tree/master/src/utils The UCSC Genome Browser and Blat software are free for academic, nonprofit, and personal use. A license is required for commercial download and installation of these binaries, with the exception of items built from the following source code directories, which are freely available for all uses: - kent/src/utils (includes big* tools) - kent/src/lib - kent/src/inc - kent/src/tagStorm - kent/src/parasol - kent/src/htslib - kent/src/hg/autoSql - kent/src/hg/autoXml For information about commercial licensing of the Genome Browser software, see http://genome.ucsc.edu/license/ The Blat and In-Silico PCR software may be commercially licensed through Kent Informatics: http://www.kentinformatics.com
Name Last modified Size Description
Parent Directory - external.i386/ 2017-05-25 15:04 - external.x86_64/ 2017-05-26 06:25 - linux.x86_64.v369/ 2019-02-01 18:05 - linux.x86_64.v385/ 2019-12-12 14:06 - linux.x86_64/ 2024-11-06 13:55 - macOSX.arm64/ 2024-11-07 05:11 - macOSX.x86_64/ 2024-11-07 06:35 - testFiles/ 2024-02-09 11:12 - userApps.archive/ 2024-11-06 21:46 - userApps.src.tgz 2024-11-06 21:46 23M userApps.v350.src.tgz 2017-06-13 23:26 15M userApps.v351.src.tgz 2017-07-06 10:42 15M userApps.v352.src.tgz 2017-07-26 09:43 15M userApps.v353.src.tgz 2017-08-15 16:28 15M userApps.v355.src.tgz 2017-09-26 18:05 16M userApps.v356.src.tgz 2017-10-17 15:07 16M userApps.v357.src.tgz 2017-11-07 15:09 16M userApps.v358.src.tgz 2017-12-05 19:54 16M userApps.v359.src.tgz 2018-01-09 16:51 16M userApps.v361.src.tgz 2018-02-20 15:35 16M userApps.v362.src.tgz 2018-03-13 19:42 16M userApps.v390.src.tgz 2019-11-13 07:23 16M userApps.v392.src.tgz 2020-01-14 17:00 16M userApps.v393.src.tgz 2020-02-05 09:41 16M userApps.v394.src.tgz 2020-02-26 09:19 16M userApps.v395.src.tgz 2020-03-17 19:17 16M userApps.v396.src.tgz 2020-04-07 15:57 16M userApps.v397.src.tgz 2020-04-28 16:02 16M userApps.v398.src.tgz 2020-05-20 08:20 16M