Description

Patch release 2 is the second patch release for the GRCh38 assembly. Patch release 2 includes all contents that were in patch release 1. This is a minor release of GRCh38 that does not disrupt the coordinate system in the reference sequence GRCh38.

Total patch scaffolds in this patch release: 31
27 patch scaffolds of type FIX
4 patch scaffolds of type NOVEL

Definitions

Patch release 2 summary table

GRCh38 reference
location
NCBI Entrez
nucleotide record
GRC region
name
sequence
name
patch
type
chr1:17157487-17460319 chr1_KN538361v1_fix REGION200 HG2095_PATCHfix-patch
chr1:26512383-26678582 chr1_KN196473v1_fix REGION189 HG2058_PATCHfix-patch
chr1:41250328-41436604 chr1_KN196472v1_fix FOXO6 HG986_PATCHfix-patch
chr1:112909422-113029606 chr1_KN196474v1_fix REGION190 HG2104_PATCHfix-patch
chr1:210220259-210677001 chr1_KN538360v1_fix REGION199 HG1832_PATCHfix-patch
chr2:233054663-233420161 chr2_KN538363v1_fix REGION201 HG2232_PATCHfix-patch
chr2:239696904-239905046 chr2_KN538362v1_fix REGION202 HG2233_PATCHfix-patch
chr3:44474647-44925818 chr3_KN196475v1_fix REGION192 HG2066_PATCHfix-patch
chr3:72325441-72740399 chr3_KN538364v1_fix RYBP HG126_PATCHfix-patch
chr3:91247723-91553319 chr3_KN196476v1_fix REGION191 HG2022_PATCHfix-patch
chr5:21098347-21230960 chr5_KN196477v1_alt REGION193 HSCHR5_7_CTG1novel-patch
chr6:67533466-67796090 chr6_KN196478v1_fix REGION194 HG2128_PATCHfix-patch
chr9:133174055-133504070 chr9_KN196479v1_fix ABO HG2030_PATCHfix-patch
chr10:38918270-39338430 chr10_KN538367v1_fix REGION205 HG2244_HG2245_PATCHfix-patch
chr10:74797382-75073121 chr10_KN196480v1_fix REGION195 HG2191_PATCHfix-patch
chr10:124109957-124195365 chr10_KN538366v1_fix REGION204 HG2242_HG2243_PATCHfix-patch
chr10:131588434-131607480 chr10_KN538365v1_fix REGION203 HG2241_PATCHfix-patch
chr11:7779133-7972558 chr11_KN538368v1_alt OLFACTORY_REGION_2 HSCHR11_1_CTG1_2novel-patch
chr11:118978401-119087276 chr11_KN196481v1_fix SLC37A4 HG2217_PATCHfix-patch
chr12:12031003-12572035 chr12_KN538369v1_fix REGION206 HG1362_PATCHfix-patch
chr12:17717409-17928910 chr12_KN196482v1_fix REGION196 HG23_PATCHfix-patch
chr12:122057735-122145576 chr12_KN538370v1_fix REGION207 HG2247_PATCHfix-patch
chr13:18171249-18358106 chr13_KN538372v1_fix BAGE5 HG2291_PATCHfix-patch
chr13:86269523-86292877 chr13_KN196483v1_fix REGION197 HG2216_PATCHfix-patch
chr13:100900735-101049613 chr13_KN538373v1_fix REGION208 HG2249_PATCHfix-patch
chr13:113936976-114147229 chr13_KN538371v1_fix REGION209 HG2288_HG2289_PATCHfix-patch
chr19:39740125-40095774 chr19_KN196484v1_fix FCGBP HG2021_PATCHfix-patch
chr22:42077656-42253758 chr22_KN196485v1_alt CYP2D6 HSCHR22_4_CTG1novel-patch
chr22:42077656-42253758 chr22_KN196486v1_alt CYP2D6 HSCHR22_5_CTG1novel-patch
chrY:56821510-56887902 chrY_KN196487v1_fix REGION198 HG2062_PATCHfix-patch
chr15_KI270905v1_alt:1-5161414 chr15_KN538374v1_fix REGION1A HG2139_PATCHfix-patch

References

Data obtained from the Genome Reference Consortium:   FTP.