Description

This track shows the alignments of recently sequenced Ebola samples to the $Organism reference sequence G3683/KM034562.1.

Methods

Ebola sequences are found NCBI Nucleotide with the search term: (ebola[title] or ebolavirus[title]) and genome

The sequences are aligned to the reference sequence with an ordinary Smith-Waterman alignment command faAlign from the 'kent' source utilities.

Source information

psl score of alignments
referencechrStartchrEndqueryquery
size
scoreidentitycollection
date
countryisolate
KM034562v1018957KP096422v11895818941100.00Mar-2014GuineaH.sapiens-tc/GIN/14/WPG-C15
KM034562v1018957KP178538v11895818941100.0003-Aug-2014LiberiaEbola virus/H.sapiens-wt/LBR/2014/Makona-201403007
KM034562v1018957KP342330v11895818941100.00Oct-2014Guinea: ConacryH.sapiens-wt/GIN/2014/Conacry-192
KM034562v1018957KP096421v11895818937100.00Mar-2014GuineaH.sapiens-tc/GIN/14/WPG-C07
KM034562v1018957KP096420v11895818935100.00Mar-2014GuineaH.sapiens-tc/GIN/14/WPG-C05
KM034562v1018957KP260799v11895818933100.002014MaliEbola virus H.sapiens/MLI/14/Manoka-Mali-DPR1
KM034562v1118957KP184503v11895718932100.0025-Aug-2014UK: GBEbola virus /H.sapiens-tc/GBR/2014/Makona-UK1.1
KM034562v1018957KP260800v11895818927100.002014MaliEbola virus H.sapiens/MLI/14/Manoka-Mali-DPR2
KM034562v1018957KP260801v11895818925100.002014MaliEbola virus H.sapiens/MLI/14/Manoka-Mali-DPR3
KM034562v1018957KP260802v11895818923100.002014MaliEbola virus H.sapiens/MLI/14/Manoka-Mali-DPR4
KM034562v13618956KP120616v11892018898100.0025-Aug-2014UK: GBH.sapiens-wt/GBR/2014/ManoRiver-UK1
KM034562v12918957KP658432v11892918894100.0029-Dec-2014UK: GBEbola virus/H.sapiens-wt/GBR/2014/Makona-UK2
KM034562v1318956KM519951v1189531774196.902014DRCEbola virus/H.sap-wt/COD/2014/Boende-Lokolia
KM034562v11618955KP271018v1189411771396.8020-Aug-2014DRCEbola virus/H.sapiens/COD/2014/Lomela-Lokolia16
KM034562v14518841KM655246v1187971768297.101976ZaireH.sapiens-tc/COD/1976/Yambuku-Ecran
KM034562v15318914KP271020v1188611763596.8020-Aug-2014DRCEbola virus/H.sapiens/COD/2014/Lomela-Lokolia19
KM034562v117618936KP271019v1187601534096.7020-Aug-2014DRCEbola virus/H.sapiens/COD/2014/Lomela-Lokolia17
KM034562v1418336NC_016144v118927319458.902003SpainLloviu virus