Description

This track shows 9-mer peptides from the proteome of Ebola virus (KJ660347v2) predicted to bind to at least 10% of the MHCI alleles accepted by the netMHC tool.

Methods

The list of alleles processed are :
HLA-A01:01
HLA-A02:01
HLA-A02:02
HLA-A02:03
HLA-A02:06
HLA-A02:11
HLA-A02:12
HLA-A02:16
HLA-A02:17
HLA-A02:19
HLA-A02:50
HLA-A03:01
HLA-A11:01
HLA-A23:01
HLA-A24:02
HLA-A24:03
HLA-A25:01
HLA-A26:01
HLA-A26:02
HLA-A26:03
HLA-A29:02
HLA-A30:01
HLA-A30:02
HLA-A31:01
HLA-A32:01
HLA-A32:07
HLA-A32:15
HLA-A33:01
HLA-A66:01
HLA-A68:01
HLA-A68:02
HLA-A68:23
HLA-A69:01
HLA-A80:01
HLA-B07:02
HLA-B08:01
HLA-B08:02
HLA-B08:03
HLA-B14:02
HLA-B15:01
HLA-B15:02
HLA-B15:03
HLA-B15:09
HLA-B15:17
HLA-B18:01
HLA-B27:05
HLA-B27:20
HLA-B35:01
HLA-B35:03
HLA-B38:01
HLA-B39:01
HLA-B40:01
HLA-B40:02
HLA-B40:13
HLA-B42:01
HLA-B44:02
HLA-B44:03
HLA-B45:01
HLA-B46:01
HLA-B48:01
HLA-B51:01
HLA-B53:01
HLA-B54:01
HLA-B57:01
HLA-B58:01
HLA-B73:01
HLA-B83:01
HLA-C03:03
HLA-C04:01
HLA-C05:01
HLA-C06:02
HLA-C07:01
HLA-C07:02
HLA-C08:02
HLA-C12:03
HLA-C14:02
HLA-C15:02
HLA-E01:01

Credits

This track was created by Arjun Roa and Maximilian Haeussler.

References

Lundegaard C, Lamberth K, Harndahl M, Buus S, Lund O, Nielsen NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11. Nucleic Acids Res1;36(Web Server issue):W509-12. 2008 PMID: 18463140; PMC: PMC2447772

Yip YL, Scheib H, Diemand AV, Gattiker A, Famiglietti LM, Gasteiger E, Bairoch A. The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants. Hum Mutat. 2004 May;23(5):464-70. PMID: 15108278