Description

This track shows protein sequence annotations from the Crapome database. The Crapome database contains genomic annotations of ...

This track contains the following subtracks:

Track Name Description
light crap light contaminants with a c-value under 0.01
heavy crap heavy contaminants with a c-value in excess of 0.01

Display Conventions and Configuration

Genomic locations of Crapome annotations are labeled with ... Annotations are shown in light blue when xxxx

Mouse over a feature to see xxx

Methods

Crapome sequences were aligned to the UCSC genome with BLAT, ...

A shell script log that documents how this track was built can be found on GitHub.

Data Access

The raw data can be explored interactively with the Table Browser, or the Data Integrator. For automated analysis, the genome annotation is stored in a bigBed file that can be downloaded from the download server. The exact filenames can be found in our track configuration file. Annotations can be converted to ASCII text by our tool bigBedToBed which can be compiled from the source code or downloaded as a precompiled binary for your system. Instructions for downloading source code and binaries can be found here. The tool can also be used to obtain only features within a given range, for example:
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/$db/crapome/crapome.bb -chrom=chr6 -start=0 -end=1000000 stdout
This track is updated every month. The MySQL table hgFixed.trackVersion contains the name of the currently available data on the website. Older versions of the data files can be downloaded from the archive folder of our downloads server.
Please refer to our mailing list archives for questions, or our Data Access FAQ for more information.

Credits

This track was created by X at UCSC, Y and Z. Special thanks to ZZZ for making the data available.

References