Description

This track shows the location of micro-RNA predictions made by mirDeep2.

Methods

Public micro-RNA-seq samples were combined with novel brain micro-RNA-seq datasets for a total of 1.3 billion reads. Reads were included if they were between 20 - 30 bases after adaptor trimming and bowtie alignments of unique sequences were used for MiRDeep2 analysis and compared to known dog and human miRNAs in miRBase in order to identify the position of both known and novel miRNAs.

Credits

The miRNA track was produced as a part of GSD_1.0/CanFam4 reference assembly project by the Lindblad-Toh group of comparative genomics at Uppsala University. Please cite the paper if you use the data for your research.

References

Wang, C.; Wallerman, O.; Arendt, M.-L.; Sundström, E.; Karlsson, Å.; Nordin, J.; Mäkeläinen, S.; Pielberg, G. R.; Hanson, J.; Ohlsson, Å.; Saellström, S.; Rönnberg, H.; Ljungvall, I.; Häggström, J.; Bergström, T. F.; Hedhammar, Å.; Meadows, J. R. S.; Lindblad-Toh, K.
A New Long-Read Dog Assembly Uncovers Thousands of Exons and Functional Elements Missing in the Previous Reference. bioRxiv 2020, 2020.07.02.185108.