This track shows protein sequence annotations from the Crapome database. The Crapome database contains genomic annotations of ...
This track contains the following subtracks:
Track Name | Description |
---|---|
light crap | light contaminants with a c-value under 0.01 |
heavy crap | heavy contaminants with a c-value in excess of 0.01 |
Genomic locations of Crapome annotations are labeled with ... Annotations are shown in light blue when xxxx
Mouse over a feature to see xxx
Crapome sequences were aligned to the UCSC genome with BLAT, ...
A shell script log that documents how this track was built can be found on GitHub.
The raw data can be explored interactively with the
Table Browser, or the
Data Integrator.
For automated analysis, the genome annotation is stored in a bigBed file that
can be downloaded from the
download server.
The exact filenames can be found in our
track configuration file.
Annotations can be converted to ASCII text by our tool bigBedToBed
which can be compiled from the source code or downloaded as a precompiled
binary for your system. Instructions for downloading source code and binaries can be found
here.
The tool can also be used to obtain only features within a given range, for example:
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/$db/crapome/crapome.bb -chrom=chr6 -start=0 -end=1000000 stdout
This track is updated every month. The MySQL table hgFixed.trackVersion
contains the name of the currently available data on the website. Older
versions of the data files can be downloaded from the archive
folder of our downloads server.
Please refer to our
mailing list archives
for questions, or our
Data Access FAQ
for more information.
This track was created by X at UCSC, Y and Z. Special thanks to ZZZ for making the data available.