0 phastConsElements5way,170 phastConsElements5way,278 0.1 refGene,312 0.2 augustusGene,136 0.5 augustusGene,138 est,677 intronEst,752 mrna,393 xenoRefGene,264 000 cons5way,241 est,637 intronEst,712 multiz5way,242 1 augustusGene,310 chainCaePb1,616 chainCaeRem2,616 chainCb3,616 chainPriPac1,616 chainSelf,556 cons5way,1166 cons5way,1342 est,732 intronEst,810 mrna,449 multiz5way,1167 multiz5way,1343 netCaePb1,75 netCaePb1,206 netCaePb1,529 netCaeRem2,75 netCaeRem2,206 netCaeRem2,529 netCb3,75 netCb3,206 netCb3,529 netPriPac1,75 netPriPac1,206 netPriPac1,529 nucleosomeAdjustedCoverage,39 nucleosomeAdjustedCoverage,42 phastConsElements5way,551 refGene,394 tRNAs,93 tRNAs,462 transcriptome,363 xenoRefGene,387 1-11 cons5way,1366 multiz5way,1367 1.0 chainCaeRem2,9 chainCaeRem2,27 chainCb3,9 chainCb3,27 netCaeRem2,9 netCaeRem2,60 netCb3,9 netCb3,60 1.6 nucleosomeAdjustedCoverage,111 100 augustusGene,134 chainCaePb1,559 chainCaeRem2,559 chainCb3,559 chainPriPac1,559 chainSelf,524 cons5way,1291 microsat,70 multiz5way,1292 netCaePb1,497 netCaeRem2,497 netCb3,497 netPriPac1,497 phastConsElements5way,457 1000 phastConsElements5way,280 1000-2000 augustusGene,161 103-7 chainCaePb1,617 chainCaeRem2,617 chainCb3,617 chainPriPac1,617 chainSelf,557 cons5way,1343 multiz5way,1344 netCaePb1,530 netCaeRem2,530 netCb3,530 netPriPac1,530 phastConsElements5way,552 1034-50 cons5way,1206 multiz5way,1207 phastConsElements5way,417 1051-63 nucleosome,331 nucleosomeAdjustedCoverage,201 nucleosomeControlCoverage,220 nucleosomeDensity,170 nucleosomeStringency,143 10darkest nucleosome,232 11 cons5way,1365 multiz5way,1366 tRNAs,409 tRNAs,411 tRNAs,505 11484-9 chainCaePb1,561 chainCaeRem2,561 chainCb3,561 chainPriPac1,561 chainSelf,526 cons5way,1293 multiz5way,1294 netCaePb1,499 netCaeRem2,499 netCb3,499 netPriPac1,499 phastConsElements5way,459 115-26 chainCaePb1,523 chainCaeRem2,523 chainCb3,523 chainPriPac1,523 chainSelf,488 cons5way,1314 multiz5way,1315 phastConsElements5way,523 11928468 chainCaePb1,525 chainCaeRem2,525 chainCb3,525 chainPriPac1,525 chainSelf,490 cons5way,1316 multiz5way,1317 phastConsElements5way,525 11932250 est,756 intronEst,834 mrna,473 refGene,366 xenoRefGene,317 12 est,752 intronEst,830 mrna,469 refGene,362 xenoRefGene,313 1247-56 tRNAs,508 12529312 chainCaePb1,619 chainCaeRem2,619 chainCb3,619 chainPriPac1,619 chainSelf,559 cons5way,1345 multiz5way,1346 netCaePb1,532 netCaeRem2,532 netCb3,532 netPriPac1,532 phastConsElements5way,554 13 chainCaePb1,615 chainCaeRem2,615 chainCb3,615 chainPriPac1,615 chainSelf,555 cons5way,1165 cons5way,1341 multiz5way,1166 multiz5way,1342 netCaePb1,528 netCaeRem2,528 netCb3,528 netPriPac1,528 phastConsElements5way,550 134-41 chainCaePb1,588 chainCaeRem2,588 chainCb3,588 chainPriPac1,588 windowmaskerSdust,112 139 cons5way,1249 multiz5way,1250 14 phastConsElements5way,500 14500911 chainCaePb1,563 chainCaeRem2,563 chainCb3,563 chainPriPac1,563 chainSelf,528 cons5way,1295 multiz5way,1296 netCaePb1,501 netCaeRem2,501 netCb3,501 netPriPac1,501 phastConsElements5way,461 14534192 augustusGene,340 14681350 est,738 intronEst,816 mrna,455 transcriptome,369 147 nucleosome,62 nucleosome,97 nucleosome,157 nucleosomeAdjustedCoverage,54 nucleosomeControlCoverage,42 nucleosomeControlCoverage,108 nucleosomeDensity,31 nucleosomeDensity,70 15 chainCaePb1,585 chainCaeRem2,585 chainCb3,585 chainPriPac1,585 cons5way,1204 microsat,30 microsat,79 microsat,130 multiz5way,1205 phastConsElements5way,415 refGene,284 simpleRepeat,90 tRNAs,95 windowmaskerSdust,109 xenoRefGene,236 15060014 phastConsElements5way,504 15608248 refGene,400 xenoRefGene,393 16 rmsk,328 16024819 cons5way,1208 multiz5way,1209 phastConsElements5way,419 16287941 chainCaePb1,590 chainCaeRem2,590 chainCb3,590 chainPriPac1,590 windowmaskerSdust,114 18 nucleosome,329 nucleosomeAdjustedCoverage,199 nucleosomeControlCoverage,218 nucleosomeDensity,168 nucleosomeStringency,141 18050394 cons5way,1368 multiz5way,1369 18218656 augustusGene,315 18477713 nucleosome,333 nucleosomeAdjustedCoverage,203 nucleosomeControlCoverage,222 nucleosomeDensity,172 nucleosomeStringency,145 1870126 tRNAs,439 18984615 tRNAs,391 19 augustusGene,335 1988 tRNAs,350 1990 blastHg18KG,173 1991 tRNAs,432 1994 tRNAs,407 tRNAs,503 1995 cons5way,904 cons5way,1247 multiz5way,905 multiz5way,1248 1996 cons5way,902 cons5way,1163 multiz5way,903 multiz5way,1164 1997 tRNAs,460 1999 microsat,103 microsat,128 simpleRepeat,65 simpleRepeat,88 1lightest nucleosome,226 2 augustusGene,142 augustusGene,337 chainCaePb1,587 chainCaeRem2,587 chainCb3,587 chainPriPac1,587 cons5way,1250 microsat,66 microsat,132 multiz5way,1251 netCaePb1,109 netCaePb1,114 netCaeRem2,109 netCaeRem2,114 netCb3,109 netCb3,114 netPriPac1,109 netPriPac1,114 nucleosomeAdjustedCoverage,28 simpleRepeat,92 windowmaskerSdust,111 20 chainCaePb1,560 chainCaeRem2,560 chainCb3,560 chainPriPac1,560 chainSelf,525 cons5way,1292 multiz5way,1293 netCaePb1,498 netCaeRem2,498 netCb3,498 netPriPac1,498 phastConsElements5way,458 tRNAs,123 2000 chainCaePb1,410 chainCaeRem2,410 chainCb3,410 chainPriPac1,410 rmsk,100 rmsk,326 2002 chainCaePb1,522 chainCaeRem2,522 chainCb3,522 chainPriPac1,522 chainSelf,487 cons5way,1313 est,750 intronEst,828 mrna,467 multiz5way,1314 phastConsElements5way,522 refGene,360 xenoRefGene,311 2003 augustusGene,333 chainCaePb1,556 chainCaePb1,613 chainCaeRem2,556 chainCaeRem2,613 chainCb3,556 chainCb3,613 chainPriPac1,556 chainPriPac1,613 chainSelf,521 chainSelf,553 cons5way,1288 cons5way,1339 multiz5way,1289 multiz5way,1340 netCaePb1,494 netCaePb1,526 netCaeRem2,494 netCaeRem2,526 netCb3,494 netCb3,526 netPriPac1,494 netPriPac1,526 phastConsElements5way,454 phastConsElements5way,548 2004 est,730 gap,38 gold,137 intronEst,808 mrna,447 phastConsElements5way,498 transcriptome,361 2005 cons5way,41 cons5way,908 cons5way,1041 cons5way,1140 cons5way,1202 cons5way,1231 cons5way,1363 multiz5way,42 multiz5way,909 multiz5way,1042 multiz5way,1141 multiz5way,1203 multiz5way,1232 multiz5way,1364 phastConsElements5way,216 phastConsElements5way,413 refGene,392 xenoRefGene,385 2006 chainCaePb1,583 chainCaeRem2,7 chainCaeRem2,25 chainCaeRem2,583 chainCb3,583 chainPriPac1,583 cons5way,70 multiz5way,71 netCaeRem2,7 netCaeRem2,58 windowmaskerSdust,107 2007 chainCaePb1,7 chainCaePb1,25 chainCb3,7 chainCb3,25 chainPriPac1,7 chainPriPac1,25 cons5way,58 cons5way,65 cons5way,75 cons5way,80 gap,21 gold,120 multiz5way,59 multiz5way,66 multiz5way,76 multiz5way,81 netCaePb1,7 netCaePb1,58 netCb3,7 netCb3,58 netPriPac1,7 netPriPac1,58 2008 augustusGene,308 nucleosome,327 nucleosomeAdjustedCoverage,197 nucleosomeControlCoverage,216 nucleosomeDensity,166 nucleosomeStringency,139 2009 tRNAs,384 2014 xenoRefGene,352 2079-88 tRNAs,412 215 blastHg18KG,176 22 chainCaePb1,586 chainCaeRem2,586 chainCb3,586 chainPriPac1,586 tRNAs,410 tRNAs,506 windowmaskerSdust,110 220 tRNAs,435 23 gap,36 gold,135 nucleosomeStringency,45 24 augustusGene,311 24259432 xenoRefGene,359 25 25mersRepeats,39 25mersRepeats,56 25mersRepeats,82 nucleosome,54 nucleosomeAdjustedCoverage,84 tRNAs,463 xenoRefGene,271 25bp nucleosomeAdjustedCoverage,7 25mer 25mersRepeats,71 25mers 25mersRepeats,1 25mersRepeats,2 25mersRepeats,12 25mersRepeats,19 25mersRepeats,30 25mersRepeats,67 25mersRepeats,101 27 microsat,131 simpleRepeat,91 2light nucleosome,227 3 augustusGene,140 blastHg18KG,177 cons5way,590 est,449 est,502 est,556 intronEst,108 intronEst,524 intronEst,577 intronEst,631 microsat,68 multiz5way,591 netCaePb1,121 netCaeRem2,121 netCb3,121 netPriPac1,121 tRNAs,436 3-5medium nucleosome,228 3.1 augustusGene,24 30 chainCaePb1,558 chainCaeRem2,558 chainCb3,558 chainPriPac1,558 chainSelf,523 cons5way,240 cons5way,1290 multiz5way,241 multiz5way,1291 netCaePb1,496 netCaeRem2,496 netCb3,496 netPriPac1,496 phastConsElements5way,456 300 nucleosomeStringency,62 32 est,733 intronEst,78 intronEst,811 mrna,450 transcriptome,364 325-351 cons5way,1233 multiz5way,1234 33 refGene,395 xenoRefGene,388 37 tRNAs,386 4 est,753 intronEst,831 mrna,470 phastConsElements5way,501 refGene,363 xenoRefGene,314 4.0 chainCaePb1,9 chainCaePb1,27 netCaePb1,9 netCaePb1,60 400-900 nucleosome,35 403-410 blastHg18KG,178 418-420 rmsk,330 42 xenoRefGene,354 45 tRNAs,180 45-60 tRNAs,200 450 nucleosomeAdjustedCoverage,108 5 augustusGene,312 blastHg18KG,175 cons5way,5 cons5wayViewalign,6 cons5wayViewelements,6 cons5wayViewphastcons,7 est,446 est,487 est,513 intronEst,521 intronEst,562 intronEst,588 multiz5way,6 phastCons5way,1 phastCons5way,4 phastConsElements5way,1 phastConsElements5way,4 tRNAs,434 tRNAs,464 5-base gc5Base,6 gc5Base,27 5.0 chainPriPac1,9 chainPriPac1,27 netPriPac1,9 netPriPac1,60 50 nucleosome,119 nucleosome,175 500 est,35 intronEst,46 573-80 microsat,133 simpleRepeat,93 6-10dark nucleosome,229 60 blastHg18KG,109 blastHg18KG,121 blastHg18KG,129 60.0 tRNAs,166 637-44 augustusGene,313 656-64 est,754 intronEst,832 mrna,471 refGene,364 xenoRefGene,315 659-71 tRNAs,437 7 nucleosome,330 nucleosomeAdjustedCoverage,200 nucleosomeControlCoverage,219 nucleosomeDensity,169 nucleosomeStringency,142 tRNAs,507 708-15 phastConsElements5way,502 750 est,636 intronEst,711 7713447 cons5way,1253 multiz5way,1254 8 cons5way,1205 multiz5way,1206 phastConsElements5way,416 8029015 tRNAs,414 8165140 tRNAs,510 9 rmsk,329 9023104 tRNAs,467 93-104 cons5way,1167 multiz5way,1168 955-64 tRNAs,465 96 est,684 intronEst,759 mrna,400 refGene,319 9862982 microsat,135 simpleRepeat,95 99-100 tRNAs,81 993-1005 cons5way,1251 multiz5way,1252 a 25mersRepeats,35 25mersRepeats,55 augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainCaePb1,35 chainCaePb1,106 chainCaePb1,160 chainCaePb1,348 chainCaePb1,354 chainCaePb1,360 chainCaePb1,364 chainCaePb1,375 chainCaePb1,407 chainCaePb1,457 chainCaePb1,531 chainCaePb1,555 chainCaePb1,567 chainCaePb1,596 chainCaeRem2,35 chainCaeRem2,106 chainCaeRem2,160 chainCaeRem2,348 chainCaeRem2,354 chainCaeRem2,360 chainCaeRem2,364 chainCaeRem2,375 chainCaeRem2,407 chainCaeRem2,457 chainCaeRem2,531 chainCaeRem2,555 chainCaeRem2,567 chainCaeRem2,596 chainCb3,35 chainCb3,106 chainCb3,160 chainCb3,348 chainCb3,354 chainCb3,360 chainCb3,364 chainCb3,375 chainCb3,407 chainCb3,457 chainCb3,531 chainCb3,555 chainCb3,567 chainCb3,596 chainPriPac1,35 chainPriPac1,106 chainPriPac1,160 chainPriPac1,348 chainPriPac1,354 chainPriPac1,360 chainPriPac1,364 chainPriPac1,375 chainPriPac1,407 chainPriPac1,457 chainPriPac1,531 chainPriPac1,555 chainPriPac1,567 chainPriPac1,596 chainSelf,24 chainSelf,114 chainSelf,172 chainSelf,339 chainSelf,344 chainSelf,349 chainSelf,353 chainSelf,364 chainSelf,385 chainSelf,496 chainSelf,520 chainSelf,536 cons5way,13 cons5way,32 cons5way,97 cons5way,125 cons5way,134 cons5way,175 cons5way,232 cons5way,273 cons5way,297 cons5way,310 cons5way,417 cons5way,426 cons5way,439 cons5way,448 cons5way,471 cons5way,477 cons5way,488 cons5way,491 cons5way,495 cons5way,505 cons5way,587 cons5way,591 cons5way,616 cons5way,866 cons5way,868 cons5way,885 cons5way,911 cons5way,915 cons5way,921 cons5way,963 cons5way,973 cons5way,1010 cons5way,1147 cons5way,1169 cons5way,1212 cons5way,1236 cons5way,1263 cons5way,1287 cons5way,1322 est,118 est,135 est,170 est,196 est,377 est,436 est,440 est,566 est,592 est,600 est,653 est,672 gc5Base,44 intronEst,111 intronEst,145 intronEst,193 intronEst,210 intronEst,245 intronEst,271 intronEst,452 intronEst,511 intronEst,515 intronEst,641 intronEst,667 intronEst,675 intronEst,728 intronEst,747 microsat,53 microsat,119 mrna,64 mrna,81 mrna,116 mrna,142 mrna,323 mrna,369 mrna,388 multiz5way,14 multiz5way,33 multiz5way,98 multiz5way,126 multiz5way,135 multiz5way,176 multiz5way,233 multiz5way,274 multiz5way,298 multiz5way,311 multiz5way,418 multiz5way,427 multiz5way,440 multiz5way,449 multiz5way,472 multiz5way,478 multiz5way,489 multiz5way,492 multiz5way,496 multiz5way,506 multiz5way,588 multiz5way,592 multiz5way,617 multiz5way,867 multiz5way,869 multiz5way,886 multiz5way,912 multiz5way,916 multiz5way,922 multiz5way,964 multiz5way,974 multiz5way,1011 multiz5way,1148 multiz5way,1170 multiz5way,1213 multiz5way,1237 multiz5way,1264 multiz5way,1288 multiz5way,1323 netCaePb1,141 netCaePb1,151 netCaePb1,155 netCaePb1,222 netCaePb1,239 netCaePb1,242 netCaePb1,292 netCaePb1,306 netCaePb1,312 netCaePb1,318 netCaePb1,322 netCaePb1,325 netCaePb1,353 netCaePb1,469 netCaePb1,493 netCaePb1,509 netCaeRem2,141 netCaeRem2,151 netCaeRem2,155 netCaeRem2,222 netCaeRem2,239 netCaeRem2,242 netCaeRem2,292 netCaeRem2,306 netCaeRem2,312 netCaeRem2,318 netCaeRem2,322 netCaeRem2,325 netCaeRem2,353 netCaeRem2,469 netCaeRem2,493 netCaeRem2,509 netCb3,141 netCb3,151 netCb3,155 netCb3,222 netCb3,239 netCb3,242 netCb3,292 netCb3,306 netCb3,312 netCb3,318 netCb3,322 netCb3,325 netCb3,353 netCb3,469 netCb3,493 netCb3,509 netPriPac1,141 netPriPac1,151 netPriPac1,155 netPriPac1,222 netPriPac1,239 netPriPac1,242 netPriPac1,292 netPriPac1,306 netPriPac1,312 netPriPac1,318 netPriPac1,322 netPriPac1,325 netPriPac1,353 netPriPac1,469 netPriPac1,493 netPriPac1,509 nucleosome,289 nucleosome,310 nucleosome,319 nucleosomeAdjustedCoverage,25 nucleosomeAdjustedCoverage,37 nucleosomeAdjustedCoverage,159 nucleosomeAdjustedCoverage,180 nucleosomeAdjustedCoverage,189 nucleosomeControlCoverage,60 nucleosomeControlCoverage,126 nucleosomeControlCoverage,178 nucleosomeControlCoverage,199 nucleosomeControlCoverage,208 nucleosomeDensity,128 nucleosomeDensity,149 nucleosomeDensity,158 nucleosomeStringency,25 nucleosomeStringency,35 nucleosomeStringency,44 nucleosomeStringency,50 nucleosomeStringency,61 nucleosomeStringency,101 nucleosomeStringency,122 nucleosomeStringency,131 phastConsElements5way,41 phastConsElements5way,47 phastConsElements5way,64 phastConsElements5way,94 phastConsElements5way,126 phastConsElements5way,130 phastConsElements5way,136 phastConsElements5way,145 phastConsElements5way,165 phastConsElements5way,244 phastConsElements5way,286 phastConsElements5way,292 phastConsElements5way,380 phastConsElements5way,386 phastConsElements5way,429 phastConsElements5way,453 phastConsElements5way,531 refGene,288 refGene,307 refGene,379 rmsk,36 rmsk,56 rmsk,196 rmsk,315 sibTxGraph,101 sibTxGraph,138 sibTxGraph,160 sibTxGraph,207 simpleRepeat,79 tRNAs,35 tRNAs,59 tRNAs,68 tRNAs,86 tRNAs,120 tRNAs,131 tRNAs,144 tRNAs,253 tRNAs,310 tRNAs,371 tRNAs,445 tRNAs,471 tRNAs,475 tRNAs,491 transcriptome,26 transcriptome,167 transcriptome,204 transcriptome,226 transcriptome,268 transcriptome,291 windowmaskerSdust,91 xenoRefGene,240 xenoRefGene,259 xenoRefGene,329 xenoRefGene,372 a91-114-31-123 chainCaePb1,400 chainCaeRem2,400 chainCb3,400 chainPriPac1,400 aa chainCaePb1,463 chainCaePb1,573 chainCaeRem2,463 chainCaeRem2,573 chainCb3,463 chainCb3,573 chainPriPac1,463 chainPriPac1,573 windowmaskerSdust,97 ab augustusGene,3 augustusGene,16 abbreviated chainCaePb1,307 chainCaeRem2,307 chainCb3,307 chainPriPac1,307 about cons5way,228 cons5way,1032 est,34 est,403 intronEst,45 intronEst,478 microsat,98 mrna,340 multiz5way,229 multiz5way,1033 netCaePb1,147 netCaePb1,160 netCaePb1,342 netCaeRem2,147 netCaeRem2,160 netCaeRem2,342 netCb3,147 netCb3,160 netCb3,342 netPriPac1,147 netPriPac1,160 netPriPac1,342 refGene,237 simpleRepeat,59 transcriptome,144 xenoRefGene,178 above cons5way,848 multiz5way,849 netCaePb1,219 netCaePb1,231 netCaePb1,251 netCaeRem2,219 netCaeRem2,231 netCaeRem2,251 netCb3,219 netCb3,231 netCb3,251 netPriPac1,219 netPriPac1,231 netPriPac1,251 tRNAs,122 abundance chainCaePb1,142 chainCaeRem2,142 chainCb3,142 chainPriPac1,142 chainSelf,152 acad chainCaePb1,551 chainCaeRem2,551 chainCb3,551 chainPriPac1,551 chainSelf,516 cons5way,1283 multiz5way,1284 netCaePb1,489 netCaeRem2,489 netCb3,489 netPriPac1,489 phastConsElements5way,449 accessed refGene,125 accession refGene,166 refGene,178 xenoRefGene,118 xenoRefGene,130 according augustusGene,114 nucleosome,215 nucleosomeAdjustedCoverage,35 accordingly tRNAs,281 accounts nucleosomeControlCoverage,65 nucleosomeControlCoverage,131 acgt chainCaePb1,399 chainCaeRem2,399 chainCb3,399 chainPriPac1,399 acid blastHg18KG,63 acids blastHg18KG,135 est,728 intronEst,806 microsat,126 mrna,445 refGene,390 simpleRepeat,86 tRNAs,382 tRNAs,405 tRNAs,458 tRNAs,501 transcriptome,359 xenoRefGene,350 xenoRefGene,383 adam cons5way,1118 multiz5way,1119 phastConsElements5way,372 added chainCaePb1,321 chainCaeRem2,321 chainCb3,321 chainPriPac1,321 additional rmsk,254 additions refGene,54 adj nucleosomeAdjustedCoverage,1 adjacent 25mersRepeats,105 cons5way,989 multiz5way,990 adjusted nucleosomeAdjustedCoverage,4 advice 25mersRepeats,130 chainCaePb1,440 chainCaePb1,483 chainCaeRem2,440 chainCaeRem2,483 chainCb3,440 chainCb3,483 chainPriPac1,440 chainPriPac1,483 chainSelf,416 chainSelf,448 netCaePb1,442 netCaeRem2,442 netCb3,442 netPriPac1,442 nucleosome,278 nucleosomeAdjustedCoverage,148 nucleosomeControlCoverage,167 nucleosomeDensity,117 nucleosomeStringency,90 af phastConsElements5way,474 affine chainCaePb1,45 chainCaeRem2,45 chainCb3,45 chainPriPac1,45 chainSelf,34 after chainSelf,50 netCaePb1,400 netCaeRem2,400 netCb3,400 netPriPac1,400 ag intronEst,85 against est,621 intronEst,37 intronEst,696 mrna,333 mrna,361 refGene,270 xenoRefGene,222 agarwala chainCaePb1,464 chainCaePb1,574 chainCaeRem2,464 chainCaeRem2,574 chainCb3,464 chainCb3,574 chainPriPac1,464 chainPriPac1,574 windowmaskerSdust,98 aka gold,87 al cons5way,40 cons5way,1040 cons5way,1189 multiz5way,41 multiz5way,1041 multiz5way,1190 nucleosome,309 nucleosomeAdjustedCoverage,179 nucleosomeControlCoverage,198 nucleosomeDensity,148 nucleosomeStringency,121 phastConsElements5way,215 phastConsElements5way,400 phastConsElements5way,486 xenoRefGene,341 algorithm augustusGene,130 phastConsElements5way,184 tRNAs,40 align chainCaePb1,158 chainCaeRem2,158 chainCb3,158 chainPriPac1,158 chainSelf,170 est,651 intronEst,726 multiz5way,2 aligned blastHg18KG,47 blastHg18KG,71 chainCaePb1,310 chainCaeRem2,310 chainCb3,310 chainPriPac1,310 chainSelf,304 cons5way,292 cons5way,302 cons5way,315 cons5way,351 cons5way,403 cons5way,444 cons5way,467 cons5way,512 cons5way,695 cons5way,754 cons5way,837 est,620 est,656 intronEst,36 intronEst,149 intronEst,695 intronEst,731 mrna,360 mrna,372 multiz5way,293 multiz5way,303 multiz5way,316 multiz5way,352 multiz5way,404 multiz5way,445 multiz5way,468 multiz5way,513 multiz5way,696 multiz5way,755 multiz5way,838 refGene,269 refGene,291 sibTxGraph,111 transcriptome,177 xenoRefGene,221 xenoRefGene,243 aligner phastConsElements5way,495 aligning chainCaePb1,95 chainCaePb1,241 chainCaePb1,271 chainCaeRem2,95 chainCaeRem2,241 chainCaeRem2,271 chainCb3,95 chainCb3,241 chainCb3,271 chainPriPac1,95 chainPriPac1,241 chainPriPac1,271 chainSelf,103 chainSelf,253 chainSelf,283 cons5way,319 cons5way,323 cons5way,359 cons5way,388 cons5way,407 est,389 intronEst,464 multiz5way,320 multiz5way,324 multiz5way,360 multiz5way,389 multiz5way,408 phastConsElements5way,487 alignment blastHg18KG,167 chainCaePb1,218 chainCaeRem2,218 chainCb3,218 chainPriPac1,218 chainSelf,230 cons5way,3 cons5way,143 cons5way,249 cons5way,266 cons5way,482 cons5way,534 cons5way,555 cons5way,700 cons5way,939 cons5way,1045 cons5way,1066 cons5way,1079 cons5wayViewalign,4 cons5wayViewelements,4 cons5wayViewphastcons,5 est,58 est,412 est,661 est,746 intronEst,136 intronEst,487 intronEst,736 intronEst,824 mrna,39 mrna,351 mrna,377 mrna,463 multiz5way,144 multiz5way,250 multiz5way,267 multiz5way,483 multiz5way,535 multiz5way,556 multiz5way,701 multiz5way,940 multiz5way,1046 multiz5way,1067 multiz5way,1080 netCaePb1,11 netCaeRem2,11 netCb3,11 netPriPac1,11 phastConsElements5way,96 phastConsElements5way,225 refGene,280 refGene,296 refGene,356 xenoRefGene,232 xenoRefGene,248 xenoRefGene,307 alignments augustusGene,300 blastHg18KG,18 chainCaePb1,12 chainCaePb1,19 chainCaePb1,326 chainCaePb1,338 chainCaePb1,346 chainCaePb1,374 chainCaePb1,518 chainCaePb1,608 chainCaeRem2,12 chainCaeRem2,19 chainCaeRem2,326 chainCaeRem2,338 chainCaeRem2,346 chainCaeRem2,374 chainCaeRem2,518 chainCaeRem2,608 chainCb3,12 chainCb3,19 chainCb3,326 chainCb3,338 chainCb3,346 chainCb3,374 chainCb3,518 chainCb3,608 chainPriPac1,12 chainPriPac1,19 chainPriPac1,326 chainPriPac1,338 chainPriPac1,346 chainPriPac1,374 chainPriPac1,518 chainPriPac1,608 chainSelf,7 chainSelf,15 chainSelf,57 chainSelf,76 chainSelf,310 chainSelf,317 chainSelf,329 chainSelf,337 chainSelf,363 chainSelf,483 chainSelf,548 cons5way,43 cons5way,112 cons5way,230 cons5way,257 cons5way,271 cons5way,457 cons5way,475 cons5way,818 cons5way,833 cons5way,850 cons5way,1309 cons5way,1334 cons5wayViewalign,2 est,16 est,670 intronEst,17 intronEst,745 mrna,17 mrna,386 multiz5way,4 multiz5way,44 multiz5way,113 multiz5way,231 multiz5way,258 multiz5way,272 multiz5way,458 multiz5way,476 multiz5way,819 multiz5way,834 multiz5way,851 multiz5way,1310 multiz5way,1335 netCaePb1,134 netCaePb1,258 netCaePb1,521 netCaeRem2,134 netCaeRem2,258 netCaeRem2,521 netCb3,134 netCb3,258 netCb3,521 netPriPac1,134 netPriPac1,258 netPriPac1,521 nucleosome,7 nucleosomeDensity,10 nucleosomeStringency,9 phastConsElements5way,81 phastConsElements5way,103 phastConsElements5way,119 phastConsElements5way,518 phastConsElements5way,543 refGene,305 rmsk,265 sibTxGraph,121 sibTxGraph,125 sibTxGraph,148 tRNAs,241 transcriptome,187 transcriptome,191 transcriptome,214 xenoRefGene,257 aligns cons5way,503 multiz5way,504 all augustusGene,207 chainCaePb1,345 chainCaeRem2,345 chainCb3,345 chainPriPac1,345 chainSelf,336 cons5way,693 est,192 est,246 est,290 est,385 est,456 gold,62 intronEst,114 intronEst,267 intronEst,321 intronEst,365 intronEst,460 intronEst,531 mrna,138 mrna,192 mrna,236 multiz5way,694 rmsk,65 tRNAs,215 transcriptome,255 allow cons5way,206 multiz5way,207 allowed est,632 intronEst,707 allows augustusGene,168 chainCaePb1,40 chainCaeRem2,40 chainCb3,40 chainPriPac1,40 chainSelf,29 est,380 intronEst,455 mrna,326 refGene,197 transcriptome,113 xenoRefGene,149 alone augustusGene,33 along cons5way,981 multiz5way,982 already netCaePb1,303 netCaeRem2,303 netCb3,303 netPriPac1,303 also blastHg18KG,137 chainCaePb1,51 chainCaeRem2,51 chainCb3,51 chainPriPac1,51 chainSelf,41 est,262 est,370 est,569 intronEst,337 intronEst,445 intronEst,644 mrna,208 mrna,316 alt-splicing sibTxGraph,2 alter est,129 intronEst,204 mrna,75 alternating gold,105 alternative augustusGene,122 sibTxGraph,3 sibTxGraph,33 sibTxGraph,60 sibTxGraph,194 transcriptome,272 alternatives-from-sampling augustusGene,131 although tRNAs,133 altschul blastHg18KG,155 alus rmsk,131 amino blastHg18KG,62 blastHg18KG,134 among cons5way,1154 multiz5way,1155 amount rmsk,185 an blastHg18KG,91 chainCaePb1,114 chainCaePb1,141 chainCaePb1,147 chainCaeRem2,114 chainCaeRem2,141 chainCaeRem2,147 chainCb3,114 chainCb3,141 chainCb3,147 chainPriPac1,114 chainPriPac1,141 chainPriPac1,147 chainSelf,121 chainSelf,151 chainSelf,157 cons5way,194 est,418 est,465 est,548 gc5Base,65 intronEst,61 intronEst,493 intronEst,540 intronEst,623 multiz5way,195 phastConsElements5way,182 refGene,191 refGene,279 rmsk,318 sibTxGraph,152 sibTxGraph,174 tRNAs,26 tRNAs,34 tRNAs,46 transcriptome,107 transcriptome,218 transcriptome,240 xenoRefGene,143 xenoRefGene,231 xenoRefGene,343 analogy nucleosomeControlCoverage,36 nucleosomeControlCoverage,102 analysis phastConsElements5way,30 tRNAs,400 tRNAs,495 analyze microsat,122 simpleRepeat,82 analyzing sibTxGraph,22 and 25mersRepeats,6 25mersRepeats,23 25mersRepeats,85 25mersRepeats,118 augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 blastHg18KG,10 blastHg18KG,25 blastHg18KG,125 chainCaePb1,58 chainCaePb1,73 chainCaePb1,190 chainCaePb1,196 chainCaePb1,208 chainCaePb1,221 chainCaePb1,316 chainCaePb1,353 chainCaePb1,362 chainCaePb1,436 chainCaePb1,487 chainCaePb1,493 chainCaePb1,504 chainCaePb1,541 chainCaePb1,546 chainCaeRem2,58 chainCaeRem2,73 chainCaeRem2,190 chainCaeRem2,196 chainCaeRem2,208 chainCaeRem2,221 chainCaeRem2,316 chainCaeRem2,353 chainCaeRem2,362 chainCaeRem2,436 chainCaeRem2,487 chainCaeRem2,493 chainCaeRem2,504 chainCaeRem2,541 chainCaeRem2,546 chainCb3,58 chainCb3,73 chainCb3,190 chainCb3,196 chainCb3,208 chainCb3,221 chainCb3,316 chainCb3,353 chainCb3,362 chainCb3,436 chainCb3,487 chainCb3,493 chainCb3,504 chainCb3,541 chainCb3,546 chainPriPac1,58 chainPriPac1,73 chainPriPac1,190 chainPriPac1,196 chainPriPac1,208 chainPriPac1,221 chainPriPac1,316 chainPriPac1,353 chainPriPac1,362 chainPriPac1,436 chainPriPac1,487 chainPriPac1,493 chainPriPac1,504 chainPriPac1,541 chainPriPac1,546 chainSelf,9 chainSelf,141 chainSelf,202 chainSelf,208 chainSelf,220 chainSelf,233 chainSelf,314 chainSelf,343 chainSelf,351 chainSelf,412 chainSelf,427 chainSelf,452 chainSelf,458 chainSelf,469 chainSelf,506 chainSelf,511 cons5way,27 cons5way,84 cons5way,88 cons5way,537 cons5way,581 cons5way,829 cons5way,887 cons5way,900 cons5way,906 cons5way,920 cons5way,972 cons5way,1020 cons5way,1096 cons5way,1109 cons5way,1138 cons5way,1197 cons5way,1273 cons5way,1278 cons5way,1359 cytoBandIdeo,8 est,10 est,26 est,48 est,88 est,132 est,282 est,425 est,439 est,447 est,575 est,681 gap,5 gap,51 gc5Base,9 gc5Base,22 gc5Base,74 gold,6 gold,27 gold,39 gold,53 gold,67 gold,107 gold,150 intronEst,11 intronEst,27 intronEst,82 intronEst,126 intronEst,163 intronEst,207 intronEst,357 intronEst,500 intronEst,514 intronEst,522 intronEst,650 intronEst,756 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 monoNucleosomesAntiSense,12 monoNucleosomesSense,12 mrna,10 mrna,24 mrna,29 mrna,78 mrna,228 mrna,347 mrna,397 multiz5way,28 multiz5way,85 multiz5way,89 multiz5way,538 multiz5way,582 multiz5way,830 multiz5way,888 multiz5way,901 multiz5way,907 multiz5way,921 multiz5way,973 multiz5way,1021 multiz5way,1097 multiz5way,1110 multiz5way,1139 multiz5way,1198 multiz5way,1274 multiz5way,1279 multiz5way,1360 netCaePb1,41 netCaePb1,66 netCaePb1,123 netCaePb1,269 netCaePb1,347 netCaePb1,379 netCaePb1,390 netCaePb1,399 netCaePb1,409 netCaePb1,438 netCaePb1,449 netCaePb1,460 netCaePb1,479 netCaePb1,484 netCaeRem2,41 netCaeRem2,66 netCaeRem2,123 netCaeRem2,269 netCaeRem2,347 netCaeRem2,379 netCaeRem2,390 netCaeRem2,399 netCaeRem2,409 netCaeRem2,438 netCaeRem2,449 netCaeRem2,460 netCaeRem2,479 netCaeRem2,484 netCb3,41 netCb3,66 netCb3,123 netCb3,269 netCb3,347 netCb3,379 netCb3,390 netCb3,399 netCb3,409 netCb3,438 netCb3,449 netCb3,460 netCb3,479 netCb3,484 netPriPac1,41 netPriPac1,66 netPriPac1,123 netPriPac1,269 netPriPac1,347 netPriPac1,379 netPriPac1,390 netPriPac1,399 netPriPac1,409 netPriPac1,438 netPriPac1,449 netPriPac1,460 netPriPac1,479 netPriPac1,484 nucleosome,9 nucleosome,88 nucleosome,148 nucleosome,187 nucleosome,203 nucleosome,266 nucleosomeAdjustedCoverage,9 nucleosomeAdjustedCoverage,47 nucleosomeAdjustedCoverage,64 nucleosomeAdjustedCoverage,68 nucleosomeAdjustedCoverage,76 nucleosomeAdjustedCoverage,136 nucleosomeControl,5 nucleosomeControlAntisenseCoverage,12 nucleosomeControlCoverage,8 nucleosomeControlCoverage,68 nucleosomeControlCoverage,134 nucleosomeControlCoverage,155 nucleosomeControlSenseCoverage,12 nucleosomeDensity,12 nucleosomeDensity,105 nucleosomeFragmentsAntisense,8 nucleosomeFragmentsSense,8 nucleosomeStringency,11 nucleosomeStringency,78 phastConsElements5way,66 phastConsElements5way,92 phastConsElements5way,135 phastConsElements5way,201 phastConsElements5way,279 phastConsElements5way,307 phastConsElements5way,343 phastConsElements5way,350 phastConsElements5way,363 phastConsElements5way,408 phastConsElements5way,439 phastConsElements5way,444 refGene,6 refGene,19 refGene,45 refGene,55 refGene,66 refGene,100 refGene,177 refGene,202 refGene,229 refGene,248 refGene,316 refGene,343 refGene,387 rmsk,7 rmsk,28 rmsk,108 rmsk,191 rmsk,222 rmsk,291 rmsk,297 rmsk,317 sangerGene,7 sangerPseudoGene,7 sangerRnaGene,7 sibTxGraph,12 sibTxGraph,26 sibTxGraph,73 sibTxGraph,105 sibTxGraph,108 sibTxGraph,159 sibTxGraph,167 sibTxGraph,225 sibTxGraph,239 sibTxGraph,250 simpleRepeat,9 simpleRepeat,42 tRNAs,10 tRNAs,33 tRNAs,75 tRNAs,103 tRNAs,175 tRNAs,209 tRNAs,316 tRNAs,331 transcriptome,6 transcriptome,21 transcriptome,55 transcriptome,66 transcriptome,86 transcriptome,118 transcriptome,171 transcriptome,174 transcriptome,225 transcriptome,233 transcriptome,309 transcriptome,323 transcriptome,334 windowmaskerSdust,10 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,187 xenoRefGene,200 xenoRefGene,268 xenoRefGene,295 xenoRefGene,380 annotated cons5way,723 cons5way,747 multiz5way,724 multiz5way,748 rmsk,67 sangerGene,39 sangerPseudoGene,38 sangerRnaGene,38 annotation 25mersRepeats,4 cons5way,251 cons5way,622 cons5way,656 cons5way,758 cons5way,768 multiz5way,252 multiz5way,623 multiz5way,657 multiz5way,759 multiz5way,769 netCaePb1,53 netCaeRem2,53 netCb3,53 netPriPac1,53 rmsk,38 annotations cons5way,674 multiz5way,675 refGene,230 sangerGene,5 sangerPseudoGene,5 sangerRnaGene,5 tRNAs,99 xenoRefGene,188 another chainSelf,68 antisense monoNucleosomesAntiSense,8 nucleosome,131 nucleosome,167 nucleosomeControlAntisenseCoverage,8 nucleosomeControlCoverage,81 nucleosomeControlCoverage,111 nucleosomeDensity,58 nucleosomeDensity,87 nucleosomeFragmentsAntisense,4 any 25mersRepeats,70 est,305 est,518 intronEst,380 intronEst,593 mrna,251 anything tRNAs,118 appear tRNAs,326 applied nucleosome,344 nucleosomeAdjustedCoverage,214 nucleosomeControlCoverage,233 nucleosomeDensity,183 nucleosomeStringency,156 apply est,188 intronEst,263 mrna,134 approach cons5way,1151 multiz5way,1152 appropriate refGene,160 xenoRefGene,112 approximately sibTxGraph,79 apr est,751 intronEst,829 mrna,468 phastConsElements5way,499 refGene,361 tRNAs,504 xenoRefGene,312 apsects gc5Base,51 archaea tRNAs,104 are 25mersRepeats,20 25mersRepeats,26 25mersRepeats,31 augustusGene,27 chainCaePb1,102 chainCaePb1,173 chainCaePb1,184 chainCaePb1,230 chainCaePb1,416 chainCaeRem2,102 chainCaeRem2,173 chainCaeRem2,184 chainCaeRem2,230 chainCaeRem2,416 chainCb3,102 chainCb3,173 chainCb3,184 chainCb3,230 chainCb3,416 chainPriPac1,102 chainPriPac1,173 chainPriPac1,184 chainPriPac1,230 chainPriPac1,416 chainSelf,110 chainSelf,185 chainSelf,196 chainSelf,242 chainSelf,392 cons5way,94 cons5way,121 cons5way,284 cons5way,409 cons5way,662 cons5way,689 cons5way,746 cons5way,762 cons5way,1068 est,30 est,67 est,149 est,159 gap,9 gold,37 gold,65 gold,68 gold,99 gold,111 intronEst,41 intronEst,224 intronEst,234 intronEst,766 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 multiz5way,95 multiz5way,122 multiz5way,285 multiz5way,410 multiz5way,663 multiz5way,690 multiz5way,747 multiz5way,763 multiz5way,1069 netCaePb1,77 netCaePb1,98 netCaePb1,105 netCaePb1,188 netCaeRem2,77 netCaeRem2,98 netCaeRem2,105 netCaeRem2,188 netCb3,77 netCb3,98 netCb3,105 netCb3,188 netPriPac1,77 netPriPac1,98 netPriPac1,105 netPriPac1,188 nucleosomeAdjustedCoverage,49 nucleosomeAdjustedCoverage,70 phastConsElements5way,38 phastConsElements5way,162 phastConsElements5way,173 phastConsElements5way,221 phastConsElements5way,227 phastConsElements5way,283 phastConsElements5way,301 refGene,36 refGene,153 refGene,251 rmsk,43 rmsk,240 rmsk,247 rmsk,263 rmsk,271 sangerGene,82 sangerPseudoGene,52 sangerRnaGene,77 sibTxGraph,110 sibTxGraph,126 sibTxGraph,189 simpleRepeat,49 tRNAs,105 tRNAs,168 tRNAs,190 tRNAs,202 tRNAs,262 tRNAs,266 tRNAs,292 tRNAs,297 tRNAs,333 transcriptome,60 transcriptome,89 transcriptome,102 transcriptome,176 transcriptome,192 transcriptome,276 xenoRefGene,40 xenoRefGene,105 xenoRefGene,203 areas 25mersRepeats,24 chainCaePb1,445 chainCaeRem2,445 chainCb3,445 chainPriPac1,445 chainSelf,79 gc5Base,37 arian chainSelf,425 rmsk,16 rmsk,287 articles tRNAs,365 as augustusGene,77 augustusGene,79 chainCaePb1,453 chainCaeRem2,453 chainCb3,453 chainPriPac1,453 cons5way,96 cons5way,124 cons5way,133 cons5way,164 cons5way,411 cons5way,615 cons5way,724 cons5way,748 cons5way,776 cons5way,1047 cons5way,1175 est,565 gap,34 gold,133 intronEst,640 microsat,21 multiz5way,97 multiz5way,125 multiz5way,134 multiz5way,165 multiz5way,412 multiz5way,616 multiz5way,725 multiz5way,749 multiz5way,777 multiz5way,1048 multiz5way,1176 netCaePb1,150 netCaePb1,190 netCaePb1,213 netCaePb1,228 netCaePb1,296 netCaePb1,351 netCaeRem2,150 netCaeRem2,190 netCaeRem2,213 netCaeRem2,228 netCaeRem2,296 netCaeRem2,351 netCb3,150 netCb3,190 netCb3,213 netCb3,228 netCb3,296 netCb3,351 netPriPac1,150 netPriPac1,190 netPriPac1,213 netPriPac1,228 netPriPac1,296 netPriPac1,351 nucleosomeStringency,24 rmsk,53 rmsk,55 sangerGene,40 sangerPseudoGene,39 sangerRnaGene,39 sibTxGraph,28 sibTxGraph,178 tRNAs,42 tRNAs,288 transcriptome,244 windowmaskerSdust,18 ask refGene,58 aspects cons5way,182 multiz5way,183 assemble nucleosomeControlCoverage,59 nucleosomeControlCoverage,125 assembled gold,95 assemblies augustusGene,196 augustusGene,237 chainCaePb1,229 chainCaePb1,305 chainCaeRem2,229 chainCaeRem2,305 chainCb3,229 chainCb3,305 chainPriPac1,229 chainPriPac1,305 chainSelf,143 chainSelf,164 chainSelf,241 cons5way,47 multiz5way,48 assembly augustusGene,197 chainCaePb1,112 chainCaePb1,120 chainCaeRem2,112 chainCaeRem2,120 chainCb3,112 chainCb3,120 chainPriPac1,112 chainPriPac1,120 chainSelf,119 chainSelf,126 gap,17 gap,24 gold,1 gold,2 gold,14 gold,21 gold,61 gold,116 gold,123 netCaePb1,63 netCaeRem2,63 netCb3,63 netPriPac1,63 assigned cons5way,853 multiz5way,854 phastConsElements5way,243 associated est,110 gc5Base,34 intronEst,185 phastConsElements5way,157 phastConsElements5way,267 rmsk,194 simpleRepeat,51 astashyn xenoRefGene,328 at 25mersRepeats,122 blastHg18KG,127 chainCaePb1,425 chainCaePb1,471 chainCaePb1,476 chainCaeRem2,425 chainCaeRem2,471 chainCaeRem2,476 chainCb3,425 chainCb3,471 chainCb3,476 chainPriPac1,425 chainPriPac1,471 chainPriPac1,476 chainSelf,401 chainSelf,436 chainSelf,441 cons5way,231 cons5way,553 cons5way,638 cons5way,881 cons5way,929 cons5way,988 cons5way,1070 cons5way,1086 cons5way,1114 cons5way,1120 cons5way,1129 est,517 est,562 est,682 est,698 intronEst,67 intronEst,76 intronEst,101 intronEst,592 intronEst,637 intronEst,757 intronEst,776 microsat,28 microsat,77 mrna,398 mrna,415 multiz5way,232 multiz5way,554 multiz5way,639 multiz5way,882 multiz5way,930 multiz5way,989 multiz5way,1071 multiz5way,1087 multiz5way,1115 multiz5way,1121 multiz5way,1130 netCaePb1,107 netCaePb1,291 netCaePb1,414 netCaePb1,427 netCaeRem2,107 netCaeRem2,291 netCaeRem2,414 netCaeRem2,427 netCb3,107 netCb3,291 netCb3,414 netCb3,427 netPriPac1,107 netPriPac1,291 netPriPac1,414 netPriPac1,427 nucleosome,196 nucleosome,250 nucleosome,270 nucleosomeAdjustedCoverage,18 nucleosomeAdjustedCoverage,140 nucleosomeControlCoverage,159 nucleosomeDensity,109 nucleosomeStringency,21 nucleosomeStringency,82 phastConsElements5way,60 phastConsElements5way,336 phastConsElements5way,368 phastConsElements5way,374 refGene,114 refGene,317 refGene,333 sibTxGraph,129 sibTxGraph,218 tRNAs,107 tRNAs,339 transcriptome,195 transcriptome,302 xenoRefGene,93 xenoRefGene,269 xenoRefGene,285 attempt est,549 intronEst,624 atypical tRNAs,274 aug cons5way,1203 cons5way,1364 multiz5way,1204 multiz5way,1365 phastConsElements5way,414 tRNAs,433 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 auml chainCaePb1,461 chainCaePb1,571 chainCaeRem2,461 chainCaeRem2,571 chainCb3,461 chainCb3,571 chainPriPac1,461 chainPriPac1,571 windowmaskerSdust,95 autocorrelated cons5way,980 multiz5way,981 available augustusGene,239 cons5way,604 cons5way,707 cons5way,733 multiz5way,605 multiz5way,708 multiz5way,734 rmsk,73 rmsk,225 rmsk,242 tRNAs,106 windowmaskerSdust,40 avoid transcriptome,267 axt chainCaePb1,337 chainCaeRem2,337 chainCb3,337 chainPriPac1,337 chainSelf,321 chainSelf,328 axtbest cons5way,1105 multiz5way,1106 phastConsElements5way,359 axtchain chainCaePb1,342 chainCaePb1,467 chainCaeRem2,342 chainCaeRem2,467 chainCb3,342 chainCb3,467 chainPriPac1,342 chainPriPac1,467 chainSelf,333 chainSelf,432 cons5way,1106 multiz5way,1107 phastConsElements5way,360 b phastConsElements5way,295 tRNAs,36 bac gold,54 back chainCaePb1,322 chainCaeRem2,322 chainCb3,322 chainPriPac1,322 bacteria tRNAs,102 baertsch augustusGene,290 chainCaePb1,503 chainCaePb1,528 chainCaePb1,599 chainCaeRem2,503 chainCaeRem2,528 chainCaeRem2,599 chainCb3,503 chainCb3,528 chainCb3,599 chainPriPac1,503 chainPriPac1,528 chainPriPac1,599 chainSelf,468 chainSelf,493 chainSelf,539 cons5way,1260 cons5way,1325 multiz5way,1261 multiz5way,1326 netCaePb1,459 netCaePb1,466 netCaePb1,512 netCaeRem2,459 netCaeRem2,466 netCaeRem2,512 netCb3,459 netCb3,466 netCb3,512 netPriPac1,459 netPriPac1,466 netPriPac1,512 phastConsElements5way,426 phastConsElements5way,477 phastConsElements5way,534 band cytoBandIdeo,2 bar cons5way,415 cons5way,436 multiz5way,416 multiz5way,437 base 25mersRepeats,47 25mersRepeats,88 cons5way,518 cons5way,530 cons5way,789 est,375 est,409 est,665 est,673 est,685 intronEst,450 intronEst,484 intronEst,740 intronEst,748 intronEst,760 mrna,348 mrna,381 mrna,389 mrna,401 multiz5way,519 multiz5way,531 multiz5way,790 nucleosome,36 nucleosome,55 nucleosome,63 nucleosome,98 nucleosome,120 nucleosome,158 nucleosome,176 nucleosome,199 nucleosome,252 nucleosomeAdjustedCoverage,55 nucleosomeAdjustedCoverage,60 nucleosomeAdjustedCoverage,85 nucleosomeControlCoverage,43 nucleosomeControlCoverage,109 nucleosomeDensity,32 nucleosomeDensity,71 nucleosomeStringency,46 nucleosomeStringency,63 refGene,300 refGene,308 refGene,320 rmsk,187 rmsk,189 rmsk,192 xenoRefGene,252 xenoRefGene,260 xenoRefGene,272 base-level cons5way,524 cons5way,606 multiz5way,525 multiz5way,607 based augustusGene,28 chainCaePb1,232 chainCaePb1,258 chainCaeRem2,232 chainCaeRem2,258 chainCb3,232 chainCb3,258 chainPriPac1,232 chainPriPac1,258 chainSelf,244 chainSelf,270 cons5way,30 cons5way,864 cons5way,1135 gap,26 gold,125 multiz5way,31 multiz5way,865 multiz5way,1136 phastConsElements5way,39 sibTxGraph,233 tRNAs,268 transcriptome,16 transcriptome,317 bases 25mersRepeats,40 25mersRepeats,98 cons5way,244 cons5way,289 cons5way,330 cons5way,661 est,36 est,386 est,638 gc5Base,25 intronEst,47 intronEst,79 intronEst,461 intronEst,713 multiz5way,245 multiz5way,290 multiz5way,331 multiz5way,662 basic blastHg18KG,165 basis cons5way,778 multiz5way,779 sibTxGraph,29 be augustusGene,99 chainCaePb1,68 chainCaeRem2,68 chainCb3,68 chainPriPac1,68 cons5way,172 cons5way,979 cons5way,986 cons5way,1035 est,109 est,122 est,144 est,253 est,263 est,294 est,312 est,322 est,371 est,497 est,605 gc5Base,41 intronEst,58 intronEst,184 intronEst,197 intronEst,219 intronEst,328 intronEst,338 intronEst,369 intronEst,387 intronEst,397 intronEst,446 intronEst,572 intronEst,680 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,240 mrna,258 mrna,268 mrna,317 multiz5way,173 multiz5way,980 multiz5way,987 multiz5way,1036 netCaePb1,117 netCaeRem2,117 netCb3,117 netPriPac1,117 nucleosomeAdjustedCoverage,101 phastConsElements5way,210 phastConsElements5way,309 refGene,109 rmsk,235 rmsk,257 sibTxGraph,87 simpleRepeat,44 tRNAs,128 tRNAs,220 tRNAs,227 transcriptome,154 xenoRefGene,88 bears est,94 intronEst,169 because est,597 intronEst,672 bed3 windowmaskerSdust,76 been chainCaePb1,292 chainCaeRem2,292 chainCb3,292 chainPriPac1,292 intronEst,8 nucleosomeControlCoverage,56 nucleosomeControlCoverage,122 phastConsElements5way,231 rmsk,70 before est,534 intronEst,609 netCaePb1,398 netCaeRem2,398 netCb3,398 netPriPac1,398 being cons5way,749 multiz5way,750 bejerano cons5way,1170 multiz5way,1171 phastConsElements5way,381 below chainCaePb1,406 chainCaeRem2,406 chainCb3,406 chainPriPac1,406 chainSelf,384 cons5way,123 multiz5way,124 rmsk,105 tRNAs,179 benson est,715 intronEst,793 microsat,102 microsat,112 microsat,114 mrna,432 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 transcriptome,346 best blastHg18KG,102 est,680 intronEst,755 mrna,396 netCaePb1,20 netCaePb1,200 netCaeRem2,20 netCaeRem2,200 netCb3,20 netCb3,200 netPriPac1,20 netPriPac1,200 refGene,315 sibTxGraph,120 transcriptome,186 xenoRefGene,267 best-in-genome cons5way,816 multiz5way,817 phastConsElements5way,79 better est,74 mrna,55 tRNAs,254 between chainCaePb1,347 chainCaeRem2,347 chainCb3,347 chainPriPac1,347 chainSelf,338 cons5way,256 cons5way,265 cons5way,300 cons5way,313 cons5way,341 cons5way,349 cons5way,372 est,17 est,85 intronEst,18 intronEst,160 mrna,18 multiz5way,257 multiz5way,266 multiz5way,301 multiz5way,314 multiz5way,342 multiz5way,350 multiz5way,373 netCaePb1,345 netCaeRem2,345 netCb3,345 netPriPac1,345 phastConsElements5way,277 tRNAs,199 biases nucleosomeControlCoverage,70 nucleosomeControlCoverage,136 biochemical tRNAs,271 biocomput chainCaePb1,521 chainCaeRem2,521 chainCb3,521 chainPriPac1,521 chainSelf,486 cons5way,1312 multiz5way,1313 phastConsElements5way,521 bioinformatics augustusGene,307 augustusGene,332 chainCaePb1,582 chainCaeRem2,582 chainCb3,582 chainPriPac1,582 cons5way,1103 multiz5way,1104 phastConsElements5way,357 sibTxGraph,10 sibTxGraph,230 transcriptome,314 windowmaskerSdust,106 biol blastHg18KG,172 cons5way,1161 multiz5way,1162 tRNAs,431 biosystems nucleosome,345 nucleosomeAdjustedCoverage,215 nucleosomeControlCoverage,234 nucleosomeDensity,184 nucleosomeStringency,157 birds augustusGene,203 bits tRNAs,124 tRNAs,167 tRNAs,201 black 25mersRepeats,22 25mersRepeats,92 25mersRepeats,97 blanchette phastConsElements5way,465 blast blastHg18KG,146 blastHg18KG,153 blast-like est,745 intronEst,823 mrna,462 refGene,355 xenoRefGene,306 blastz chainCaePb1,312 chainCaePb1,422 chainCaePb1,610 chainCaeRem2,312 chainCaeRem2,422 chainCaeRem2,610 chainCb3,312 chainCb3,422 chainCb3,610 chainPriPac1,312 chainPriPac1,422 chainPriPac1,610 chainSelf,308 chainSelf,398 chainSelf,550 cons5way,825 cons5way,1092 cons5way,1298 cons5way,1336 multiz5way,826 multiz5way,1093 multiz5way,1299 multiz5way,1337 netCaePb1,257 netCaePb1,424 netCaePb1,523 netCaeRem2,257 netCaeRem2,424 netCaeRem2,523 netCb3,257 netCb3,424 netCb3,523 netPriPac1,257 netPriPac1,424 netPriPac1,523 phastConsElements5way,88 phastConsElements5way,342 phastConsElements5way,507 phastConsElements5way,545 blat blastHg18KG,54 blastHg18KG,179 est,625 est,634 est,743 intronEst,700 intronEst,709 intronEst,821 mrna,366 mrna,460 refGene,276 refGene,353 xenoRefGene,228 blat--the xenoRefGene,305 blocks chainCaePb1,371 chainCaePb1,392 chainCaeRem2,371 chainCaeRem2,392 chainCb3,371 chainCb3,392 chainPriPac1,371 chainPriPac1,392 chainSelf,360 chainSelf,381 cons5way,267 cons5way,303 cons5way,316 cons5way,352 multiz5way,268 multiz5way,304 multiz5way,317 multiz5way,353 sibTxGraph,43 transcriptome,94 blockset phastConsElements5way,494 blue cons5way,414 multiz5way,415 bolchi tRNAs,474 both chainCaePb1,55 chainCaePb1,77 chainCaePb1,132 chainCaeRem2,55 chainCaeRem2,77 chainCaeRem2,132 chainCb3,55 chainCb3,77 chainCb3,132 chainPriPac1,55 chainPriPac1,77 chainPriPac1,132 chainSelf,45 chainSelf,138 cons5way,354 cons5way,376 cons5way,875 cons5way,1026 multiz5way,355 multiz5way,377 multiz5way,876 multiz5way,1027 netCaePb1,388 netCaeRem2,388 netCb3,388 netPriPac1,388 phastConsElements5way,54 refGene,174 refGene,245 tRNAs,329 transcriptome,53 xenoRefGene,126 xenoRefGene,197 boundaries blastHg18KG,59 gold,98 box chainCaePb1,282 chainCaeRem2,282 chainCb3,282 chainPriPac1,282 chainSelf,294 est,208 est,219 est,259 intronEst,283 intronEst,294 intronEst,334 mrna,154 mrna,165 mrna,205 netCaePb1,142 netCaeRem2,142 netCb3,142 netPriPac1,142 refGene,264 tRNAs,37 xenoRefGene,216 boxes chainCaePb1,83 chainCaePb1,93 chainCaeRem2,83 chainCaeRem2,93 chainCb3,83 chainCb3,93 chainPriPac1,83 chainPriPac1,93 chainSelf,91 chainSelf,101 est,179 intronEst,254 mrna,125 netCaePb1,131 netCaeRem2,131 netCb3,131 netPriPac1,131 bp 25mersRepeats,57 25mersRepeats,83 brackets cons5way,454 cons5way,485 multiz5way,455 multiz5way,486 branch cons5way,956 multiz5way,957 phastConsElements5way,152 branch-point augustusGene,55 breaks cons5way,391 multiz5way,392 brenneri chainCaePb1,2 chainCaePb1,5 chainCaePb1,22 chainCaePb1,57 chainCaePb1,111 chainCaePb1,297 chainCaePb1,351 cons5way,22 cons5way,63 cons5way,799 multiz5way,23 multiz5way,64 multiz5way,800 netCaePb1,2 netCaePb1,5 netCaePb1,22 netCaePb1,48 brian blastHg18KG,199 briggsae chainCb3,2 chainCb3,5 chainCb3,22 chainCb3,57 chainCb3,111 chainCb3,297 chainCb3,351 cons5way,26 cons5way,73 cons5way,809 multiz5way,27 multiz5way,74 multiz5way,810 netCb3,2 netCb3,5 netCb3,22 netCb3,48 broken sibTxGraph,127 transcriptome,193 brown gold,108 xenoRefGene,322 browser 25mersRepeats,137 chainCaePb1,491 chainCaeRem2,491 chainCb3,491 chainPriPac1,491 chainSelf,456 est,226 est,339 est,356 intronEst,301 intronEst,414 intronEst,431 mrna,172 mrna,285 mrna,302 netCaePb1,447 netCaeRem2,447 netCb3,447 netPriPac1,447 nucleosome,285 nucleosomeAdjustedCoverage,155 nucleosomeControlCoverage,174 nucleosomeDensity,124 nucleosomeStringency,97 phastConsElements5way,318 bruccoleri tRNAs,353 built augustusGene,51 augustusGene,67 transcriptome,165 burks tRNAs,419 but blastHg18KG,96 est,454 est,511 est,564 intronEst,529 intronEst,586 intronEst,639 netCaePb1,233 netCaeRem2,233 netCb3,233 netPriPac1,233 rmsk,270 button chainCaePb1,253 chainCaeRem2,253 chainCb3,253 chainPriPac1,253 chainSelf,265 refGene,129 by 25mersRepeats,28 25mersRepeats,114 25mersRepeats,132 augustusGene,147 augustusGene,266 augustusGene,282 blastHg18KG,6 blastHg18KG,182 blastHg18KG,195 chainCaePb1,70 chainCaePb1,86 chainCaePb1,223 chainCaePb1,286 chainCaePb1,429 chainCaePb1,455 chainCaePb1,479 chainCaePb1,501 chainCaeRem2,70 chainCaeRem2,86 chainCaeRem2,223 chainCaeRem2,286 chainCaeRem2,429 chainCaeRem2,455 chainCaeRem2,479 chainCaeRem2,501 chainCb3,70 chainCb3,86 chainCb3,223 chainCb3,286 chainCb3,429 chainCb3,455 chainCb3,479 chainCb3,501 chainPriPac1,70 chainPriPac1,86 chainPriPac1,223 chainPriPac1,286 chainPriPac1,429 chainPriPac1,455 chainPriPac1,479 chainPriPac1,501 chainSelf,94 chainSelf,235 chainSelf,298 chainSelf,405 chainSelf,424 chainSelf,444 chainSelf,466 cons5way,166 cons5way,827 cons5way,856 cons5way,943 cons5way,1093 cons5way,1111 cons5way,1117 cons5way,1126 est,464 est,633 est,711 gap,44 gc5Base,81 gold,43 gold,101 gold,143 intronEst,87 intronEst,539 intronEst,708 intronEst,789 microsat,110 mrna,428 multiz5way,167 multiz5way,828 multiz5way,857 multiz5way,944 multiz5way,1094 multiz5way,1112 multiz5way,1118 multiz5way,1127 netCaePb1,101 netCaePb1,119 netCaePb1,305 netCaePb1,421 netCaePb1,431 netCaePb1,457 netCaeRem2,101 netCaeRem2,119 netCaeRem2,305 netCaeRem2,421 netCaeRem2,431 netCaeRem2,457 netCb3,101 netCb3,119 netCb3,305 netCb3,421 netCb3,431 netCb3,457 netPriPac1,101 netPriPac1,119 netPriPac1,305 netPriPac1,421 netPriPac1,431 netPriPac1,457 nucleosome,78 nucleosome,138 nucleosome,262 nucleosome,280 nucleosomeAdjustedCoverage,80 nucleosomeAdjustedCoverage,132 nucleosomeAdjustedCoverage,150 nucleosomeControlCoverage,23 nucleosomeControlCoverage,35 nucleosomeControlCoverage,89 nucleosomeControlCoverage,101 nucleosomeControlCoverage,151 nucleosomeControlCoverage,169 nucleosomeDensity,27 nucleosomeDensity,66 nucleosomeDensity,101 nucleosomeDensity,119 nucleosomeStringency,34 nucleosomeStringency,74 nucleosomeStringency,92 phastCons5way,7 phastConsElements5way,19 phastConsElements5way,90 phastConsElements5way,113 phastConsElements5way,164 phastConsElements5way,178 phastConsElements5way,198 phastConsElements5way,233 phastConsElements5way,345 phastConsElements5way,365 phastConsElements5way,371 refGene,150 refGene,155 refGene,219 refGene,231 refGene,243 refGene,340 refGene,345 rmsk,4 rmsk,14 rmsk,50 sangerGene,49 sangerGene,84 sangerPseudoGene,54 sangerRnaGene,79 sibTxGraph,21 sibTxGraph,211 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 tRNAs,20 tRNAs,335 tRNAs,347 tRNAs,490 transcriptome,91 transcriptome,135 transcriptome,262 transcriptome,295 windowmaskerSdust,6 windowmaskerSdust,20 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,189 xenoRefGene,195 xenoRefGene,292 xenoRefGene,297 c blastHg18KG,74 blastHg18KG,84 chainCaePb1,1 chainCaePb1,4 chainCaePb1,21 chainCaePb1,31 chainCaePb1,56 chainCaePb1,59 chainCaePb1,110 chainCaePb1,118 chainCaePb1,165 chainCaePb1,296 chainCaePb1,298 chainCaePb1,350 chainCaePb1,356 chainCaeRem2,1 chainCaeRem2,4 chainCaeRem2,21 chainCaeRem2,31 chainCaeRem2,56 chainCaeRem2,59 chainCaeRem2,110 chainCaeRem2,118 chainCaeRem2,165 chainCaeRem2,296 chainCaeRem2,298 chainCaeRem2,350 chainCaeRem2,356 chainCb3,1 chainCb3,4 chainCb3,21 chainCb3,31 chainCb3,56 chainCb3,59 chainCb3,110 chainCb3,118 chainCb3,165 chainCb3,296 chainCb3,298 chainCb3,350 chainCb3,356 chainPriPac1,31 chainPriPac1,59 chainPriPac1,118 chainPriPac1,165 chainPriPac1,298 chainPriPac1,356 chainSelf,3 chainSelf,18 chainSelf,84 chainSelf,177 cons5way,19 cons5way,21 cons5way,23 cons5way,25 cons5way,54 cons5way,62 cons5way,67 cons5way,72 cons5way,118 cons5way,306 cons5way,499 cons5way,550 cons5way,793 cons5way,795 cons5way,800 cons5way,805 cons5way,810 est,1 est,4 est,18 est,614 gap,15 gc5Base,23 gold,17 intronEst,3 intronEst,19 intronEst,120 intronEst,689 mrna,1 mrna,4 mrna,19 mrna,356 multiz5way,20 multiz5way,22 multiz5way,24 multiz5way,26 multiz5way,55 multiz5way,63 multiz5way,68 multiz5way,73 multiz5way,119 multiz5way,307 multiz5way,500 multiz5way,551 multiz5way,794 multiz5way,796 multiz5way,801 multiz5way,806 multiz5way,811 netCaePb1,1 netCaePb1,4 netCaePb1,21 netCaePb1,23 netCaePb1,31 netCaePb1,47 netCaeRem2,1 netCaeRem2,4 netCaeRem2,21 netCaeRem2,23 netCaeRem2,31 netCaeRem2,47 netCb3,1 netCb3,4 netCb3,21 netCb3,23 netCb3,31 netCb3,47 netPriPac1,23 netPriPac1,31 nucleosome,83 nucleosome,143 nucleosome,316 nucleosomeAdjustedCoverage,43 nucleosomeAdjustedCoverage,44 nucleosomeAdjustedCoverage,48 nucleosomeAdjustedCoverage,69 nucleosomeAdjustedCoverage,186 nucleosomeControlCoverage,32 nucleosomeControlCoverage,98 nucleosomeControlCoverage,205 nucleosomeDensity,39 nucleosomeDensity,78 nucleosomeDensity,155 nucleosomeStringency,128 phastConsElements5way,470 refGene,16 refGene,272 tRNAs,349 tRNAs,420 windowmaskerSdust,30 xenoRefGene,24 xenoRefGene,224 c-114100-125-31 chainCaePb1,401 chainCaeRem2,401 chainCb3,401 chainPriPac1,401 caenorhabditis augustusGene,212 cons5way,1358 gap,22 gold,121 multiz5way,1359 caepb1 chainCaePb1,10 chainCaePb1,23 chainCaePb1,28 cons5way,66 multiz5way,67 netCaePb1,10 netCaePb1,61 netCaePb1,62 caerem2 chainCaeRem2,10 chainCaeRem2,23 chainCaeRem2,28 cons5way,71 multiz5way,72 netCaeRem2,10 netCaeRem2,61 netCaeRem2,62 california chainCaePb1,475 chainCaeRem2,475 chainCb3,475 chainPriPac1,475 chainSelf,440 netCaePb1,418 netCaeRem2,418 netCb3,418 netPriPac1,418 can augustusGene,98 chainCaePb1,50 chainCaePb1,67 chainCaeRem2,50 chainCaeRem2,67 chainCb3,50 chainCb3,67 chainPriPac1,50 chainPriPac1,67 chainSelf,40 cons5way,171 cons5way,1025 cons5way,1034 est,121 est,252 intronEst,196 intronEst,327 mrna,67 mrna,198 multiz5way,172 multiz5way,1026 multiz5way,1035 nucleosomeAdjustedCoverage,100 phastConsElements5way,209 phastConsElements5way,308 refGene,108 sibTxGraph,86 simpleRepeat,35 transcriptome,153 xenoRefGene,87 cancer sibTxGraph,223 transcriptome,307 candidates tRNAs,51 tRNAs,57 canonical intronEst,70 cap-selected est,527 intronEst,602 cap-selection est,536 intronEst,611 carefully tRNAs,229 cases chainCaePb1,154 chainCaeRem2,154 chainCb3,154 chainPriPac1,154 chainSelf,166 netCaePb1,88 netCaeRem2,88 netCb3,88 netPriPac1,88 tRNAs,224 categorized netCaePb1,189 netCaeRem2,189 netCb3,189 netPriPac1,189 category-based nucleosome,219 cauldron chainCaePb1,538 chainCaeRem2,538 chainCb3,538 chainPriPac1,538 chainSelf,503 cons5way,1270 multiz5way,1271 netCaePb1,476 netCaeRem2,476 netCb3,476 netPriPac1,476 phastConsElements5way,436 cause netCaePb1,171 netCaeRem2,171 netCb3,171 netPriPac1,171 caused chainCaePb1,69 chainCaeRem2,69 chainCb3,69 chainPriPac1,69 cb3 chainCb3,10 chainCb3,23 chainCb3,28 cons5way,76 multiz5way,77 netCb3,10 netCb3,61 netCb3,62 cdna augustusGene,299 est,429 est,432 intronEst,504 intronEst,507 cds sangerGene,64 transcriptome,59 ce4 cons5way,60 cons5way,61 multiz5way,61 multiz5way,62 ce4.fa windowmaskerSdust,62 windowmaskerSdust,71 cells est,424 intronEst,499 center 25mersRepeats,87 gap,55 gold,154 centers 25mersRepeats,16 25mersRepeats,104 cerevisiae augustusGene,222 certain phastConsElements5way,190 rmsk,260 chain chainCaePb1,3 chainCaePb1,80 chainCaeRem2,3 chainCaeRem2,80 chainCb3,3 chainCb3,80 chainPriPac1,3 chainPriPac1,80 chainSelf,2 chainSelf,88 cons5way,278 cons5way,473 cons5way,1256 multiz5way,279 multiz5way,474 multiz5way,1257 netCaePb1,25 netCaePb1,94 netCaePb1,149 netCaePb1,265 netCaePb1,308 netCaePb1,319 netCaePb1,327 netCaePb1,332 netCaePb1,355 netCaePb1,364 netCaeRem2,25 netCaeRem2,94 netCaeRem2,149 netCaeRem2,265 netCaeRem2,308 netCaeRem2,319 netCaeRem2,327 netCaeRem2,332 netCaeRem2,355 netCaeRem2,364 netCb3,25 netCb3,94 netCb3,149 netCb3,265 netCb3,308 netCb3,319 netCb3,327 netCb3,332 netCb3,355 netCb3,364 netPriPac1,25 netPriPac1,94 netPriPac1,149 netPriPac1,265 netPriPac1,308 netPriPac1,319 netPriPac1,327 netPriPac1,332 netPriPac1,355 netPriPac1,364 phastConsElements5way,422 chained blastHg18KG,7 blastHg18KG,88 chainCaePb1,11 chainCaeRem2,11 chainCb3,11 chainPriPac1,11 chainSelf,5 chaining cons5way,828 multiz5way,829 phastConsElements5way,91 chainnet cons5way,1107 multiz5way,1108 netCaePb1,282 netCaePb1,407 netCaeRem2,282 netCaeRem2,407 netCb3,282 netCb3,407 netPriPac1,282 netPriPac1,407 phastConsElements5way,361 chains blastHg18KG,104 blastHg18KG,117 chainCaePb1,157 chainCaePb1,169 chainCaePb1,180 chainCaePb1,226 chainCaePb1,265 chainCaePb1,389 chainCaePb1,404 chainCaePb1,415 chainCaePb1,498 chainCaeRem2,157 chainCaeRem2,169 chainCaeRem2,180 chainCaeRem2,226 chainCaeRem2,265 chainCaeRem2,389 chainCaeRem2,404 chainCaeRem2,415 chainCaeRem2,498 chainCb3,157 chainCb3,169 chainCb3,180 chainCb3,226 chainCb3,265 chainCb3,389 chainCb3,404 chainCb3,415 chainCb3,498 chainPriPac1,157 chainPriPac1,169 chainPriPac1,180 chainPriPac1,226 chainPriPac1,265 chainPriPac1,389 chainPriPac1,404 chainPriPac1,415 chainPriPac1,498 chainSelf,169 chainSelf,181 chainSelf,192 chainSelf,238 chainSelf,277 chainSelf,378 chainSelf,382 chainSelf,391 chainSelf,463 cons5way,255 multiz5way,256 netCaePb1,76 netCaePb1,81 netCaePb1,103 netCaePb1,115 netCaePb1,122 netCaePb1,179 netCaePb1,253 netCaePb1,274 netCaePb1,289 netCaePb1,349 netCaePb1,380 netCaeRem2,76 netCaeRem2,81 netCaeRem2,103 netCaeRem2,115 netCaeRem2,122 netCaeRem2,179 netCaeRem2,253 netCaeRem2,274 netCaeRem2,289 netCaeRem2,349 netCaeRem2,380 netCb3,76 netCb3,81 netCb3,103 netCb3,115 netCb3,122 netCb3,179 netCb3,253 netCb3,274 netCb3,289 netCb3,349 netCb3,380 netPriPac1,76 netPriPac1,81 netPriPac1,103 netPriPac1,115 netPriPac1,122 netPriPac1,179 netPriPac1,253 netPriPac1,274 netPriPac1,289 netPriPac1,349 netPriPac1,380 chan tRNAs,366 change est,125 intronEst,200 mrna,71 changes cons5way,892 multiz5way,893 phastConsElements5way,71 characteristic est,319 intronEst,394 mrna,265 check chainCaePb1,248 chainCaeRem2,248 chainCb3,248 chainPriPac1,248 chainSelf,260 checkboxes cons5way,200 multiz5way,201 chiaromonte chainCaePb1,508 chainCaeRem2,508 chainCb3,508 chainPriPac1,508 chainSelf,473 cons5way,1299 multiz5way,1300 phastConsElements5way,508 chicken augustusGene,204 augustusGene,262 choose augustusGene,171 est,275 est,314 intronEst,350 intronEst,389 mrna,221 mrna,260 chosen cons5way,785 est,337 intronEst,412 mrna,283 multiz5way,786 chr4 chainCaePb1,280 chainCaeRem2,280 chainCb3,280 chainPriPac1,280 chainSelf,292 christian sibTxGraph,212 transcriptome,296 chrn chainSelf,70 chainSelf,73 chromatin nucleosomeDensity,41 nucleosomeDensity,80 chromosome chainCaePb1,206 chainCaePb1,235 chainCaePb1,260 chainCaePb1,268 chainCaePb1,278 chainCaePb1,287 chainCaePb1,352 chainCaePb1,358 chainCaeRem2,206 chainCaeRem2,235 chainCaeRem2,260 chainCaeRem2,268 chainCaeRem2,278 chainCaeRem2,287 chainCaeRem2,352 chainCaeRem2,358 chainCb3,206 chainCb3,235 chainCb3,260 chainCb3,268 chainCb3,278 chainCb3,287 chainCb3,352 chainCb3,358 chainPriPac1,206 chainPriPac1,235 chainPriPac1,260 chainPriPac1,268 chainPriPac1,278 chainPriPac1,287 chainPriPac1,352 chainPriPac1,358 chainSelf,218 chainSelf,247 chainSelf,272 chainSelf,280 chainSelf,290 chainSelf,299 chainSelf,342 chainSelf,347 cons5way,397 cons5way,441 cytoBandIdeo,1 multiz5way,398 multiz5way,442 netCaePb1,212 netCaePb1,227 netCaePb1,243 netCaeRem2,212 netCaeRem2,227 netCaeRem2,243 netCb3,212 netCb3,227 netCb3,243 netPriPac1,212 netPriPac1,227 netPriPac1,243 chromosome-based chainCaePb1,228 chainCaeRem2,228 chainCb3,228 chainPriPac1,228 chainSelf,240 churchill cons5way,901 cons5way,1145 multiz5way,902 multiz5way,1146 circle rmsk,172 cite tRNAs,362 class rmsk,169 classes rmsk,121 clawson 25mersRepeats,134 cons5way,1128 cons5way,1180 gc5Base,83 multiz5way,1129 multiz5way,1181 nucleosome,282 nucleosomeAdjustedCoverage,152 nucleosomeControlCoverage,171 nucleosomeDensity,121 nucleosomeStringency,94 phastConsElements5way,391 phastConsElements5way,481 cleavage nucleosomeControlCoverage,29 nucleosomeControlCoverage,95 nucleosomeDensity,37 nucleosomeDensity,76 click cons5way,187 cons5way,246 gc5Base,56 multiz5way,188 multiz5way,247 netCaePb1,139 netCaePb1,153 netCaeRem2,139 netCaeRem2,153 netCb3,139 netCb3,153 netPriPac1,139 netPriPac1,153 refGene,158 refGene,262 transcriptome,139 xenoRefGene,110 xenoRefGene,214 clone gold,70 gold,97 cloned est,434 intronEst,509 clones gold,29 gold,64 gold,86 closest augustusGene,241 cloverleaf tRNAs,312 cm xenoRefGene,333 cntl nucleosomeControlAntisenseCoverage,1 nucleosomeControlSenseCoverage,1 code windowmaskerSdust,34 coding cons5way,617 cons5way,726 cons5way,751 multiz5way,618 multiz5way,727 multiz5way,752 refGene,260 simpleRepeat,38 transcriptome,98 xenoRefGene,212 coding_exon sangerGene,58 coding_transcript sangerGene,46 codon cons5way,601 cons5way,634 cons5way,652 cons5way,711 cons5way,738 cons5way,769 mrna,321 mrna,346 multiz5way,602 multiz5way,635 multiz5way,653 multiz5way,712 multiz5way,739 multiz5way,770 refGene,186 refGene,193 refGene,208 refGene,232 transcriptome,109 transcriptome,124 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 xenoRefGene,190 codons refGene,213 refGene,220 transcriptome,129 transcriptome,136 xenoRefGene,165 xenoRefGene,172 collapsed nucleosome,202 colleagues sibTxGraph,217 transcriptome,301 collection refGene,29 xenoRefGene,33 color chainCaePb1,256 chainCaeRem2,256 chainCb3,256 chainPriPac1,256 chainSelf,268 est,131 est,316 intronEst,206 intronEst,391 mrna,77 mrna,262 nucleosome,211 refGene,79 refGene,217 rmsk,177 transcriptome,133 xenoRefGene,58 xenoRefGene,169 color-coded nucleosome,204 coloration gold,109 colored 25mersRepeats,78 chainCaePb1,231 chainCaeRem2,231 chainCb3,231 chainPriPac1,231 chainSelf,243 coloring chainCaePb1,247 chainCaeRem2,247 chainCb3,247 chainPriPac1,247 chainSelf,259 cons5way,358 est,410 intronEst,485 mrna,322 mrna,349 multiz5way,359 refGene,187 refGene,194 refGene,226 transcriptome,110 xenoRefGene,139 xenoRefGene,146 xenoRefGene,184 colors refGene,102 refGene,209 transcriptome,125 xenoRefGene,81 xenoRefGene,161 column cons5way,940 multiz5way,941 combination est,278 intronEst,353 mrna,224 combinatorial transcriptome,269 combined rmsk,202 comes cons5way,437 multiz5way,438 comparative chainCaePb1,13 chainCaeRem2,13 chainCb3,13 chainPriPac1,13 cons5way,7 cons5wayViewalign,8 cons5wayViewelements,8 cons5wayViewphastcons,9 multiz5way,8 netCaePb1,13 netCaeRem2,13 netCb3,13 netPriPac1,13 phastCons5way,9 phastConsElements5way,8 compare mrna,331 refGene,203 transcriptome,119 xenoRefGene,155 completely refGene,185 xenoRefGene,137 complex chainCaePb1,125 chainCaeRem2,125 chainCb3,125 chainPriPac1,125 chainSelf,131 complexity rmsk,30 rmsk,153 composition cons5way,531 multiz5way,532 compressed nucleosomeAdjustedCoverage,110 computational sibTxGraph,208 transcriptome,292 computes cons5way,861 multiz5way,862 computing sibTxGraph,204 transcriptome,288 concerning refGene,61 conditional augustusGene,118 configuration chainCaePb1,222 chainCaeRem2,222 chainCb3,222 chainPriPac1,222 chainSelf,234 cons5way,85 cons5way,190 cons5way,198 cons5way,204 cons5way,259 cons5way,636 est,49 gc5Base,60 gc5Base,69 intronEst,127 mrna,30 multiz5way,86 multiz5way,191 multiz5way,199 multiz5way,205 multiz5way,260 multiz5way,637 netCaePb1,67 netCaeRem2,67 netCb3,67 netPriPac1,67 nucleosome,188 refGene,67 rmsk,109 transcriptome,67 xenoRefGene,46 configured cons5way,173 est,372 gc5Base,42 intronEst,447 mrna,318 multiz5way,174 refGene,110 xenoRefGene,89 cons phastCons5way,3 consecutive 25mersRepeats,96 conservation cons5way,1 cons5way,4 cons5way,17 cons5way,92 cons5way,149 cons5way,163 cons5way,169 cons5way,221 cons5way,854 cons5way,862 cons5way,976 cons5way,1059 cons5wayViewalign,5 cons5wayViewelements,5 cons5wayViewphastcons,2 cons5wayViewphastcons,6 multiz5way,18 multiz5way,93 multiz5way,150 multiz5way,164 multiz5way,170 multiz5way,222 multiz5way,855 multiz5way,863 multiz5way,977 multiz5way,1060 phastCons5way,6 phastConsElements5way,206 conservation-scoring cons5way,1003 multiz5way,1004 conservative transcriptome,28 conserved cons5way,918 cons5way,945 cons5way,1023 cons5way,1191 cons5wayViewelements,1 multiz5way,919 multiz5way,946 multiz5way,1024 multiz5way,1192 phastConsElements5way,6 phastConsElements5way,16 phastConsElements5way,108 phastConsElements5way,133 phastConsElements5way,160 phastConsElements5way,199 phastConsElements5way,219 phastConsElements5way,235 phastConsElements5way,254 phastConsElements5way,402 considerable est,608 intronEst,683 considered intronEst,59 consisting cons5way,458 multiz5way,459 sibTxGraph,184 consortium gold,52 sangerGene,90 sangerPseudoGene,60 sangerRnaGene,85 constant phastConsElements5way,166 constraints phastConsElements5way,191 constructed phastConsElements5way,99 sibTxGraph,20 constructs phastConsElements5way,125 consult est,220 intronEst,295 mrna,166 contained netCaePb1,381 netCaeRem2,381 netCb3,381 netPriPac1,381 contains blastHg18KG,16 est,245 intronEst,320 mrna,191 phastConsElements5way,271 refGene,190 transcriptome,106 xenoRefGene,142 contamination est,596 intronEst,93 intronEst,671 content augustusGene,71 gc5Base,31 conterio tRNAs,472 context cons5way,396 cons5way,464 cons5way,480 multiz5way,397 multiz5way,465 multiz5way,481 contigs gold,23 gold,33 gold,36 continuous-time cons5way,964 multiz5way,965 contributes sibTxGraph,172 transcriptome,238 contributions sibTxGraph,258 transcriptome,342 control nucleosome,13 nucleosome,16 nucleosomeAdjustedCoverage,65 nucleosomeAdjustedCoverage,77 nucleosomeControl,1 nucleosomeControl,3 nucleosomeControlAntisenseCoverage,6 nucleosomeControlCoverage,5 nucleosomeControlCoverage,13 nucleosomeControlCoverage,24 nucleosomeControlCoverage,53 nucleosomeControlCoverage,61 nucleosomeControlCoverage,79 nucleosomeControlCoverage,90 nucleosomeControlCoverage,119 nucleosomeControlCoverage,127 nucleosomeControlSenseCoverage,6 refGene,147 tRNAs,498 controls refGene,113 xenoRefGene,92 conventions chainCaePb1,220 chainCaeRem2,220 chainCb3,220 chainPriPac1,220 chainSelf,232 cons5way,83 cons5way,283 est,47 est,55 intronEst,125 intronEst,133 mrna,28 mrna,36 multiz5way,84 multiz5way,284 netCaePb1,65 netCaeRem2,65 netCb3,65 netPriPac1,65 nucleosome,186 refGene,65 refGene,73 rmsk,107 transcriptome,65 transcriptome,75 xenoRefGene,44 xenoRefGene,52 converted chainCaePb1,328 chainCaeRem2,328 chainCb3,328 chainPriPac1,328 chainSelf,319 copies microsat,80 copy cons5way,507 multiz5way,508 core monoNucleosomesAntiSense,2 monoNucleosomesSense,2 nucleosome,6 nucleosome,184 nucleosomeDensity,9 nucleosomeStringency,8 cores nucleosome,100 nucleosome,160 nucleosomeAdjustedCoverage,57 nucleosomeDensity,30 nucleosomeDensity,69 cornell phastConsElements5way,375 corrections refGene,56 corresponding cons5way,938 multiz5way,939 corresponds est,228 intronEst,303 mrna,174 nucleosome,40 costa nucleosome,304 nucleosomeAdjustedCoverage,174 nucleosomeControlCoverage,193 nucleosomeDensity,143 nucleosomeStringency,116 covariance tRNAs,60 tRNAs,402 cove tRNAs,64 cove-predicted tRNAs,341 cover est,529 intronEst,604 coverage monoNucleosomesAntiSense,4 monoNucleosomesSense,4 nucleosomeAdjustedCoverage,6 nucleosomeAdjustedCoverage,31 nucleosomeControlAntisenseCoverage,7 nucleosomeControlCoverage,2 nucleosomeControlCoverage,6 nucleosomeControlCoverage,14 nucleosomeControlCoverage,22 nucleosomeControlCoverage,62 nucleosomeControlCoverage,80 nucleosomeControlCoverage,88 nucleosomeControlCoverage,128 nucleosomeControlSenseCoverage,7 nucleosomeDensity,2 nucleosomeDensity,3 nucleosomeDensity,15 nucleosomeDensity,26 nucleosomeDensity,54 nucleosomeDensity,65 phastConsElements5way,194 covered 25mersRepeats,27 netCaePb1,304 netCaeRem2,304 netCb3,304 netPriPac1,304 covering nucleosomeAdjustedCoverage,58 covg monoNucleosomesAntiSense,3 monoNucleosomesSense,3 nucleosomeControlAntisenseCoverage,3 nucleosomeControlSenseCoverage,3 covrg nucleosomeAdjustedCoverage,3 create gold,93 windowmaskerSdust,48 created cons5way,1085 microsat,89 multiz5way,1086 phastConsElements5way,335 rmsk,13 sibTxGraph,142 transcriptome,208 creates chainCaePb1,363 chainCaeRem2,363 chainCb3,363 chainPriPac1,363 chainSelf,352 credits 25mersRepeats,106 augustusGene,247 blastHg18KG,139 chainCaePb1,421 chainCaeRem2,421 chainCb3,421 chainPriPac1,421 chainSelf,397 cons5way,1081 est,693 gap,18 gc5Base,71 gold,117 intronEst,771 microsat,104 mrna,409 multiz5way,1082 netCaePb1,405 netCaeRem2,405 netCb3,405 netPriPac1,405 nucleosome,254 nucleosomeAdjustedCoverage,124 nucleosomeControlCoverage,143 nucleosomeDensity,93 nucleosomeStringency,66 phastConsElements5way,331 refGene,328 rmsk,284 sangerGene,77 sangerPseudoGene,47 sangerRnaGene,72 sibTxGraph,191 simpleRepeat,66 tRNAs,328 transcriptome,278 xenoRefGene,280 criteria est,292 est,310 est,348 est,366 intronEst,367 intronEst,385 intronEst,423 intronEst,441 mrna,238 mrna,256 mrna,294 mrna,312 cruz chainCaePb1,478 chainCaeRem2,478 chainCb3,478 chainPriPac1,478 chainSelf,443 netCaePb1,420 netCaeRem2,420 netCb3,420 netPriPac1,420 culex augustusGene,220 curated refGene,344 refGene,380 sangerGene,42 xenoRefGene,296 xenoRefGene,373 current est,163 intronEst,238 mrna,109 rmsk,216 currently cons5way,1043 multiz5way,1044 cytosine gc5Base,24 d augustusGene,293 chainCaePb1,535 chainCaePb1,604 chainCaeRem2,535 chainCaeRem2,604 chainCb3,535 chainCb3,604 chainPriPac1,535 chainPriPac1,604 chainSelf,500 chainSelf,544 cons5way,1214 cons5way,1267 cons5way,1330 multiz5way,1215 multiz5way,1268 multiz5way,1331 netCaePb1,473 netCaePb1,517 netCaeRem2,473 netCaeRem2,517 netCb3,473 netCb3,517 netPriPac1,473 netPriPac1,517 phastConsElements5way,433 phastConsElements5way,539 d23-6 est,736 intronEst,814 mrna,453 transcriptome,367 d501-4 refGene,398 xenoRefGene,391 d756-63 xenoRefGene,357 d93-7 tRNAs,389 da est,716 intronEst,794 mrna,433 transcriptome,347 dark refGene,96 xenoRefGene,75 darker cons5way,155 intronEst,142 multiz5way,156 darkest nucleosome,210 darkly est,69 mrna,50 data 25mersRepeats,108 cons5way,1049 est,703 gc5Base,73 intronEst,781 microsat,47 mrna,420 multiz5way,1050 nucleosome,17 nucleosome,69 nucleosome,256 nucleosomeAdjustedCoverage,66 nucleosomeAdjustedCoverage,92 nucleosomeAdjustedCoverage,96 nucleosomeAdjustedCoverage,115 nucleosomeAdjustedCoverage,126 nucleosomeControlCoverage,41 nucleosomeControlCoverage,107 nucleosomeControlCoverage,145 nucleosomeDensity,95 nucleosomeStringency,68 phastConsElements5way,177 refGene,32 refGene,338 rmsk,229 rmsk,246 sangerGene,38 sangerGene,94 sangerPseudoGene,37 sangerPseudoGene,64 sangerRnaGene,37 sangerRnaGene,89 sibTxGraph,235 tRNAs,360 transcriptome,18 transcriptome,319 xenoRefGene,36 xenoRefGene,290 database chainCaePb1,494 chainCaeRem2,494 chainCb3,494 chainPriPac1,494 chainSelf,459 est,734 intronEst,812 mrna,451 netCaePb1,450 netCaeRem2,450 netCb3,450 netPriPac1,450 refGene,383 refGene,396 rmsk,316 tRNAs,110 tRNAs,372 tRNAs,387 transcriptome,4 transcriptome,365 xenoRefGene,355 xenoRefGene,376 xenoRefGene,389 databases est,583 est,710 intronEst,97 intronEst,658 intronEst,788 mrna,427 sibTxGraph,249 tRNAs,489 transcriptome,333 david chainCaePb1,488 chainCaeRem2,488 chainCb3,488 chainPriPac1,488 chainSelf,453 de augustusGene,303 default chainCaePb1,224 chainCaeRem2,224 chainCb3,224 chainPriPac1,224 chainSelf,236 cons5way,667 cons5way,681 cons5way,736 cons5way,766 multiz5way,668 multiz5way,682 multiz5way,737 multiz5way,767 refGene,151 refGene,244 xenoRefGene,103 xenoRefGene,196 degraded est,498 intronEst,573 degree est,593 intronEst,668 deletion chainCaePb1,107 chainCaePb1,540 chainCaeRem2,107 chainCaeRem2,540 chainCb3,107 chainCb3,540 chainPriPac1,107 chainPriPac1,540 chainSelf,115 chainSelf,505 cons5way,312 cons5way,1272 multiz5way,313 multiz5way,1273 netCaePb1,478 netCaeRem2,478 netCb3,478 netPriPac1,478 phastConsElements5way,438 rmsk,190 deletions chainCaePb1,75 chainCaePb1,140 chainCaeRem2,75 chainCaeRem2,140 chainCb3,75 chainCb3,140 chainPriPac1,75 chainPriPac1,140 chainSelf,150 dense cons5way,146 est,61 gold,76 intronEst,139 mrna,42 multiz5way,147 density cons5way,127 multiz5way,128 depending cons5way,781 multiz5way,782 depicts gold,80 windowmaskerSdust,15 deposited est,570 gap,31 gold,130 intronEst,645 derived netCaePb1,255 netCaeRem2,255 netCb3,255 netPriPac1,255 tRNAs,129 described netCaePb1,262 netCaeRem2,262 netCb3,262 netPriPac1,262 rmsk,96 rmsk,309 describes augustusGene,226 cons5way,874 multiz5way,875 phastConsElements5way,53 description 25mersRepeats,8 augustusGene,12 blastHg18KG,13 chainCaePb1,15 chainCaeRem2,15 chainCb3,15 chainPriPac1,15 chainSelf,11 cons5way,9 est,12 est,112 gap,7 gc5Base,11 gold,8 intronEst,13 intronEst,187 microsat,10 mrna,12 mrna,58 multiz5way,10 netCaePb1,15 netCaePb1,267 netCaeRem2,15 netCaeRem2,267 netCb3,15 netCb3,267 netPriPac1,15 netPriPac1,267 nucleosome,11 nucleosomeControlCoverage,10 nucleosomeDensity,14 phastConsElements5way,10 refGene,9 refGene,120 rmsk,9 sangerGene,10 sangerPseudoGene,10 sangerRnaGene,10 sibTxGraph,14 simpleRepeat,11 tRNAs,13 transcriptome,9 windowmaskerSdust,12 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 desired est,277 intronEst,352 mrna,223 detailed augustusGene,90 cons5way,226 multiz5way,227 netCaePb1,145 netCaePb1,164 netCaeRem2,145 netCaeRem2,164 netCb3,145 netCb3,164 netPriPac1,145 netPriPac1,164 rmsk,37 tRNAs,97 details phastConsElements5way,208 phastConsElements5way,313 detected tRNAs,377 detection nucleosome,339 nucleosomeAdjustedCoverage,209 nucleosomeControlCoverage,228 nucleosomeDensity,178 nucleosomeStringency,151 tRNAs,39 tRNAs,449 determined windowmaskerSdust,19 determining netCaePb1,169 netCaeRem2,169 netCb3,169 netPriPac1,169 developed chainCaePb1,424 chainCaePb1,454 chainCaePb1,470 chainCaeRem2,424 chainCaeRem2,454 chainCaeRem2,470 chainCb3,424 chainCb3,454 chainCb3,470 chainPriPac1,424 chainPriPac1,454 chainPriPac1,470 chainSelf,400 chainSelf,435 netCaePb1,413 netCaePb1,426 netCaeRem2,413 netCaeRem2,426 netCb3,413 netCb3,426 netPriPac1,413 netPriPac1,426 sibTxGraph,210 transcriptome,294 dha cons5way,1353 multiz5way,1354 di-nucleotide microsat,3 microsat,32 diagrammed cons5way,847 multiz5way,848 dieci tRNAs,476 diekhans augustusGene,288 differ est,395 intronEst,470 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 cons5way,181 cons5way,440 cons5way,478 gc5Base,50 multiz5way,182 multiz5way,441 multiz5way,479 netCaePb1,244 netCaeRem2,244 netCb3,244 netPriPac1,244 rmsk,120 digestion nucleosome,81 nucleosome,141 direction est,81 est,99 intronEst,156 intronEst,174 discarded chainCaePb1,412 chainCaeRem2,412 chainCb3,412 chainPriPac1,412 chainSelf,388 refGene,286 sibTxGraph,190 xenoRefGene,238 discontinuities cons5way,392 multiz5way,393 discontinuity cons5way,418 multiz5way,419 discover blastHg18KG,57 diseases simpleRepeat,54 display 25mersRepeats,129 chainCaePb1,198 chainCaePb1,219 chainCaePb1,262 chainCaePb1,492 chainCaeRem2,198 chainCaeRem2,219 chainCaeRem2,262 chainCaeRem2,492 chainCb3,198 chainCb3,219 chainCb3,262 chainCb3,492 chainPriPac1,198 chainPriPac1,219 chainPriPac1,262 chainPriPac1,492 chainSelf,210 chainSelf,231 chainSelf,274 chainSelf,457 cons5way,82 cons5way,90 cons5way,147 cons5way,212 cons5way,223 cons5way,238 cons5way,254 cons5way,262 cons5way,280 cons5way,525 cons5way,571 cons5way,607 cons5way,620 est,46 est,54 est,62 est,127 est,154 est,184 est,318 est,342 est,358 est,374 est,384 intronEst,112 intronEst,124 intronEst,132 intronEst,140 intronEst,202 intronEst,229 intronEst,259 intronEst,393 intronEst,417 intronEst,433 intronEst,449 intronEst,459 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,264 mrna,288 mrna,304 mrna,320 multiz5way,83 multiz5way,91 multiz5way,148 multiz5way,213 multiz5way,224 multiz5way,239 multiz5way,255 multiz5way,263 multiz5way,281 multiz5way,526 multiz5way,572 multiz5way,608 multiz5way,621 netCaePb1,64 netCaePb1,70 netCaePb1,129 netCaePb1,158 netCaePb1,187 netCaePb1,448 netCaeRem2,64 netCaeRem2,70 netCaeRem2,129 netCaeRem2,158 netCaeRem2,187 netCaeRem2,448 netCb3,64 netCb3,70 netCb3,129 netCb3,158 netCb3,187 netCb3,448 netPriPac1,64 netPriPac1,70 netPriPac1,129 netPriPac1,158 netPriPac1,187 netPriPac1,448 nucleosome,185 nucleosome,277 nucleosomeAdjustedCoverage,147 nucleosomeControlCoverage,166 nucleosomeDensity,116 nucleosomeStringency,89 phastConsElements5way,323 refGene,64 refGene,72 refGene,101 refGene,138 refGene,164 refGene,207 rmsk,106 rmsk,112 rmsk,182 sibTxGraph,51 sibTxGraph,71 transcriptome,64 transcriptome,74 transcriptome,123 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainCaePb1,417 chainCaeRem2,417 chainCb3,417 chainPriPac1,417 chainSelf,393 cons5way,95 cons5way,122 cons5way,185 cons5way,595 cons5way,611 cons5way,663 cons5way,678 gc5Base,54 intronEst,767 multiz5way,96 multiz5way,123 multiz5way,186 multiz5way,596 multiz5way,612 multiz5way,664 multiz5way,679 netCaePb1,106 netCaePb1,203 netCaeRem2,106 netCaeRem2,203 netCb3,106 netCb3,203 netPriPac1,106 netPriPac1,203 nucleosome,65 refGene,252 xenoRefGene,204 displays chainCaePb1,82 chainCaeRem2,82 chainCb3,82 chainPriPac1,82 chainSelf,90 microsat,13 rmsk,116 simpleRepeat,14 tRNAs,16 dissertation augustusGene,105 distance cons5way,340 multiz5way,341 distant est,553 intronEst,628 distinguished gold,100 distributions augustusGene,83 diverged netCaePb1,404 netCaeRem2,404 netCb3,404 netPriPac1,404 dj blastHg18KG,164 est,720 intronEst,798 mrna,437 transcriptome,351 dl est,724 intronEst,802 mrna,441 transcriptome,355 dna cons5way,374 cons5way,404 cons5way,430 cons5way,460 cons5way,879 cons5way,1244 microsat,123 multiz5way,375 multiz5way,405 multiz5way,431 multiz5way,461 multiz5way,880 multiz5way,1245 nucleosome,28 nucleosome,86 nucleosome,92 nucleosome,146 nucleosome,152 nucleosomeControlCoverage,34 nucleosomeControlCoverage,100 phastConsElements5way,58 rmsk,23 rmsk,31 rmsk,145 rmsk,148 simpleRepeat,83 tRNAs,427 tRNAs,488 do tRNAs,152 tRNAs,305 does cons5way,215 cons5way,1006 multiz5way,216 multiz5way,1007 tRNAs,113 tRNAs,135 done augustusGene,265 augustusGene,281 cons5way,741 multiz5way,742 double chainCaePb1,90 chainCaePb1,121 chainCaeRem2,90 chainCaeRem2,121 chainCb3,90 chainCb3,121 chainPriPac1,90 chainPriPac1,121 chainSelf,98 chainSelf,127 cons5way,321 multiz5way,322 double-lined chainCaePb1,182 chainCaeRem2,182 chainCb3,182 chainPriPac1,182 chainSelf,194 double-sided chainCaePb1,64 chainCaeRem2,64 chainCb3,64 chainPriPac1,64 download nucleosomeAdjustedCoverage,93 downloaded sangerGene,25 sangerPseudoGene,24 sangerRnaGene,24 downloads rmsk,76 dr refGene,374 xenoRefGene,367 drafts gold,26 drastically intronEst,99 drawn sibTxGraph,53 drosophila augustusGene,213 due chainCaePb1,104 chainCaePb1,175 chainCaePb1,187 chainCaeRem2,104 chainCaeRem2,175 chainCaeRem2,187 chainCb3,104 chainCb3,175 chainCb3,187 chainPriPac1,104 chainPriPac1,175 chainPriPac1,187 chainSelf,112 chainSelf,187 chainSelf,199 cons5way,295 cons5way,336 cons5way,378 cons5way,446 multiz5way,296 multiz5way,337 multiz5way,379 multiz5way,447 duplication chainCaePb1,539 chainCaeRem2,539 chainCb3,539 chainPriPac1,539 chainSelf,81 chainSelf,504 cons5way,1271 multiz5way,1272 netCaePb1,477 netCaeRem2,477 netCb3,477 netPriPac1,477 phastConsElements5way,437 durbin tRNAs,396 during netCaePb1,309 netCaeRem2,309 netCb3,309 netPriPac1,309 dyad nucleosomeStringency,23 nucleosomeStringency,40 dyads nucleosomeStringency,59 dynamic chainCaePb1,314 chainCaePb1,376 chainCaeRem2,314 chainCaeRem2,376 chainCb3,314 chainCb3,376 chainPriPac1,314 chainPriPac1,376 chainSelf,365 e tRNAs,352 e.g chainCaePb1,279 chainCaeRem2,279 chainCb3,279 chainPriPac1,279 chainSelf,69 chainSelf,291 cons5way,425 multiz5way,426 each 25mersRepeats,46 25mersRepeats,64 blastHg18KG,68 chainCaePb1,216 chainCaeRem2,216 chainCb3,216 chainPriPac1,216 chainSelf,228 cons5way,114 cons5way,533 cons5way,822 cons5way,882 cons5way,930 est,217 intronEst,292 mrna,163 multiz5way,115 multiz5way,534 multiz5way,823 multiz5way,883 multiz5way,931 nucleosome,38 nucleosome,117 nucleosome,173 nucleosome,190 nucleosome,240 nucleosomeAdjustedCoverage,19 nucleosomeAdjustedCoverage,59 nucleosomeControlCoverage,49 nucleosomeControlCoverage,115 phastConsElements5way,61 phastConsElements5way,85 phastConsElements5way,240 sibTxGraph,123 sibTxGraph,144 sibTxGraph,155 sibTxGraph,163 sibTxGraph,169 transcriptome,189 transcriptome,210 transcriptome,221 transcriptome,229 transcriptome,235 easier sibTxGraph,62 ed phastConsElements5way,484 eddy tRNAs,65 tRNAs,394 tRNAs,442 edge sibTxGraph,153 sibTxGraph,175 sibTxGraph,182 transcriptome,219 transcriptome,241 transcriptome,248 editor cons5way,1222 multiz5way,1223 educated tRNAs,255 effect cons5way,1054 est,568 intronEst,643 multiz5way,1055 either chainCaePb1,87 chainCaeRem2,87 chainCb3,87 chainPriPac1,87 chainSelf,95 cons5way,423 cons5way,432 multiz5way,424 multiz5way,433 transcriptome,36 el phastConsElements5way,3 electronic rmsk,319 elegans blastHg18KG,75 blastHg18KG,85 chainCaePb1,32 chainCaePb1,60 chainCaePb1,119 chainCaePb1,166 chainCaePb1,299 chainCaePb1,357 chainCaeRem2,32 chainCaeRem2,60 chainCaeRem2,119 chainCaeRem2,166 chainCaeRem2,299 chainCaeRem2,357 chainCb3,32 chainCb3,60 chainCb3,119 chainCb3,166 chainCb3,299 chainCb3,357 chainPriPac1,32 chainPriPac1,60 chainPriPac1,119 chainPriPac1,166 chainPriPac1,299 chainPriPac1,357 chainSelf,4 chainSelf,19 chainSelf,85 chainSelf,178 cons5way,20 cons5way,55 cons5way,119 cons5way,307 cons5way,500 cons5way,551 cons5way,562 cons5way,794 cons5way,796 cons5way,801 cons5way,806 cons5way,811 est,2 est,5 est,19 est,615 gap,16 gap,23 gold,18 gold,122 intronEst,4 intronEst,20 intronEst,121 intronEst,690 mrna,2 mrna,5 mrna,20 mrna,357 multiz5way,21 multiz5way,56 multiz5way,120 multiz5way,308 multiz5way,501 multiz5way,552 multiz5way,563 multiz5way,795 multiz5way,797 multiz5way,802 multiz5way,807 multiz5way,812 netCaePb1,24 netCaePb1,32 netCaeRem2,24 netCaeRem2,32 netCb3,24 netCb3,32 netPriPac1,24 netPriPac1,32 nucleosome,84 nucleosome,144 nucleosome,317 nucleosomeAdjustedCoverage,187 nucleosomeControlCoverage,33 nucleosomeControlCoverage,99 nucleosomeControlCoverage,206 nucleosomeDensity,40 nucleosomeDensity,79 nucleosomeDensity,156 nucleosomeStringency,129 refGene,17 refGene,273 xenoRefGene,4 xenoRefGene,25 xenoRefGene,225 element cons5wayViewphastcons,1 phastConsElements5way,241 rmsk,198 elements cons5way,1192 cons5wayViewelements,2 multiz5way,1193 phastConsElements5way,7 phastConsElements5way,17 phastConsElements5way,109 phastConsElements5way,200 phastConsElements5way,220 phastConsElements5way,403 rmsk,3 rmsk,127 rmsk,135 rmsk,140 rmsk,147 rmsk,323 tRNAs,302 eliminate est,641 intronEst,716 eliminating intronEst,105 elnitski phastConsElements5way,471 else cons5way,509 multiz5way,510 em chainCaePb1,459 chainCaePb1,569 chainCaeRem2,459 chainCaeRem2,569 chainCb3,459 chainCb3,569 chainPriPac1,459 chainPriPac1,569 phastConsElements5way,183 windowmaskerSdust,93 embl sibTxGraph,241 transcriptome,22 transcriptome,325 emerged est,538 intronEst,613 netCaePb1,315 netCaeRem2,315 netCb3,315 netPriPac1,315 enables cons5way,261 multiz5way,262 enclose cons5way,455 multiz5way,456 encode tRNAs,171 encodes tRNAs,143 end est,488 est,506 est,516 est,557 gold,55 intronEst,563 intronEst,581 intronEst,591 intronEst,632 nucleosome,43 nucleosome,59 sibTxGraph,168 transcriptome,234 ends intronEst,86 engineering 25mersRepeats,138 nucleosome,286 nucleosomeAdjustedCoverage,156 nucleosomeControlCoverage,175 nucleosomeDensity,125 nucleosomeStringency,98 england gap,50 gold,149 enrichment nucleosomeAdjustedCoverage,17 enter chainCaePb1,273 chainCaeRem2,273 chainCb3,273 chainPriPac1,273 chainSelf,285 entered est,254 intronEst,329 mrna,200 entire windowmaskerSdust,37 enzymatic nucleosomeControlCoverage,67 nucleosomeControlCoverage,133 equal phastConsElements5way,247 equivalently nucleosome,66 ermolaeva xenoRefGene,330 especially est,155 intronEst,230 mrna,101 est est,11 est,87 est,183 est,419 est,582 est,603 est,655 est,701 gold,45 intronEst,12 intronEst,62 intronEst,96 intronEst,122 intronEst,162 intronEst,258 intronEst,494 intronEst,657 intronEst,678 intronEst,730 intronEst,779 mrna,11 sibTxGraph,13 transcriptome,49 establish cons5way,684 multiz5way,685 estimated phastConsElements5way,174 ests est,3 est,6 est,23 est,29 est,193 est,287 est,302 est,343 est,361 est,458 est,503 est,514 est,616 est,643 intronEst,2 intronEst,5 intronEst,24 intronEst,40 intronEst,109 intronEst,115 intronEst,150 intronEst,268 intronEst,362 intronEst,377 intronEst,418 intronEst,436 intronEst,533 intronEst,578 intronEst,589 intronEst,691 intronEst,718 sibTxGraph,109 sibTxGraph,188 transcriptome,175 estscan transcriptome,63 et cons5way,39 cons5way,1039 cons5way,1188 multiz5way,40 multiz5way,1040 multiz5way,1189 nucleosome,308 nucleosomeAdjustedCoverage,178 nucleosomeControlCoverage,197 nucleosomeDensity,147 nucleosomeStringency,120 phastConsElements5way,214 phastConsElements5way,399 phastConsElements5way,485 xenoRefGene,340 eukaryotes tRNAs,101 eukaryotic tRNAs,483 even est,577 est,584 intronEst,652 intronEst,659 events sibTxGraph,61 every netCaePb1,27 netCaeRem2,27 netCb3,27 netPriPac1,27 evidence intronEst,65 sibTxGraph,179 transcriptome,245 evol cons5way,1162 multiz5way,1163 evolution chainCaePb1,536 chainCaeRem2,536 chainCb3,536 chainPriPac1,536 chainSelf,501 cons5way,1159 cons5way,1227 cons5way,1242 cons5way,1268 multiz5way,1160 multiz5way,1228 multiz5way,1243 multiz5way,1269 netCaePb1,474 netCaeRem2,474 netCb3,474 netPriPac1,474 phastConsElements5way,434 evolutionarily cons5way,1190 multiz5way,1191 phastConsElements5way,401 evolutionary cons5way,16 cons5way,339 multiz5way,17 multiz5way,340 ew blastHg18KG,162 exact tRNAs,264 example est,186 est,239 intronEst,261 intronEst,314 mrna,132 mrna,185 except phastConsElements5way,149 excessive cons5way,338 multiz5way,339 exclude est,134 est,328 est,334 intronEst,209 intronEst,403 intronEst,409 mrna,80 mrna,274 mrna,280 excluding cons5way,207 multiz5way,208 exist netCaePb1,90 netCaeRem2,90 netCb3,90 netPriPac1,90 exon augustusGene,86 blastHg18KG,58 blastHg18KG,69 blastHg18KG,103 blastHg18KG,116 sangerGene,61 sibTxGraph,156 transcriptome,222 exons blastHg18KG,86 sibTxGraph,45 sibTxGraph,57 transcriptome,81 expansions simpleRepeat,48 expense intronEst,103 experimental nucleosomeControlCoverage,39 nucleosomeControlCoverage,105 sibTxGraph,23 explanation cons5way,195 gc5Base,66 multiz5way,196 explosion transcriptome,270 expressed est,20 est,194 intronEst,21 intronEst,269 mrna,140 extend rmsk,267 extended blastHg18KG,119 extending blastHg18KG,105 extent 25mersRepeats,84 extraction nucleosome,87 nucleosome,147 f chainCaePb1,509 chainCaeRem2,509 chainCb3,509 chainPriPac1,509 chainSelf,474 cons5way,1300 gold,73 multiz5way,1301 phastConsElements5way,509 tRNAs,473 xenoRefGene,327 factor est,231 intronEst,306 mrna,177 phastConsElements5way,168 falling nucleosomeStringency,42 false tRNAs,87 faq augustusGene,45 rmsk,280 farrell xenoRefGene,332 feature chainCaePb1,202 chainCaeRem2,202 chainCb3,202 chainPriPac1,202 chainSelf,214 est,378 intronEst,453 mrna,324 nucleosome,39 nucleosome,118 nucleosome,174 refGene,195 refGene,239 transcriptome,111 transcriptome,146 xenoRefGene,147 xenoRefGene,180 features nucleosome,60 nucleosome,94 nucleosome,154 refGene,104 tRNAs,185 tRNAs,218 tRNAs,238 tRNAs,276 xenoRefGene,83 feb chainPriPac1,6 chainPriPac1,24 cons5way,79 cons5way,1248 multiz5way,80 multiz5way,1249 netPriPac1,6 netPriPac1,57 february gap,20 gold,119 fed chainCaePb1,340 chainCaeRem2,340 chainCb3,340 chainPriPac1,340 chainSelf,331 feedback refGene,42 felsenstein cons5way,899 cons5way,1143 multiz5way,900 multiz5way,1144 fetched nucleosomeAdjustedCoverage,102 fewer cons5way,243 multiz5way,244 tRNAs,91 ffer chainCaePb1,462 chainCaePb1,572 chainCaeRem2,462 chainCaeRem2,572 chainCb3,462 chainCb3,572 chainPriPac1,462 chainPriPac1,572 windowmaskerSdust,96 fichant tRNAs,32 tRNAs,417 field augustusGene,120 phastConsElements5way,266 phastConsElements5way,306 file windowmaskerSdust,77 files sangerGene,24 sangerGene,76 sangerPseudoGene,23 sangerPseudoGene,46 sangerRnaGene,23 sangerRnaGene,71 fill netCaePb1,339 netCaePb1,372 netCaeRem2,339 netCaeRem2,372 netCb3,339 netCb3,372 netPriPac1,339 netPriPac1,372 filled netCaePb1,99 netCaePb1,118 netCaePb1,321 netCaePb1,394 netCaeRem2,99 netCaeRem2,118 netCaeRem2,321 netCaeRem2,394 netCb3,99 netCb3,118 netCb3,321 netCb3,394 netPriPac1,99 netPriPac1,118 netPriPac1,321 netPriPac1,394 filter chainCaePb1,285 chainCaeRem2,285 chainCb3,285 chainPriPac1,285 chainSelf,297 est,119 est,168 est,181 est,190 est,237 est,267 est,291 est,309 est,347 est,365 intronEst,194 intronEst,243 intronEst,256 intronEst,265 intronEst,312 intronEst,342 intronEst,366 intronEst,384 intronEst,422 intronEst,440 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,213 mrna,237 mrna,255 mrna,293 mrna,311 filtered chainSelf,312 est,330 intronEst,405 mrna,276 filtering chainSelf,51 est,269 intronEst,344 mrna,215 filters tRNAs,55 finally blastHg18KG,81 find chainCaePb1,385 chainCaeRem2,385 chainCb3,385 chainPriPac1,385 chainSelf,374 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 netCaePb1,38 netCaeRem2,38 netCb3,38 netPriPac1,38 finished gold,13 gold,28 gold,66 gold,85 fire 25mersRepeats,120 nucleosome,268 nucleosomeAdjustedCoverage,138 nucleosomeControlCoverage,157 nucleosomeDensity,107 nucleosomeStringency,80 first blastHg18KG,36 netCaePb1,279 netCaeRem2,279 netCb3,279 netPriPac1,279 fish augustusGene,201 fit netCaePb1,299 netCaeRem2,299 netCb3,299 netPriPac1,299 fitch cons5way,1139 cons5way,1352 multiz5way,1140 multiz5way,1353 five nucleosome,213 five_prime_utr sangerGene,71 fixed cons5way,1014 multiz5way,1015 flag rmsk,253 flags rmsk,255 fly augustusGene,214 fold tRNAs,308 followed cons5way,826 multiz5way,827 phastConsElements5way,89 sangerGene,48 following chainCaePb1,394 chainCaeRem2,394 chainCb3,394 chainPriPac1,394 cons5way,46 cons5way,282 cons5way,649 cons5way,773 cons5way,840 cons5way,1090 multiz5way,47 multiz5way,283 multiz5way,650 multiz5way,774 multiz5way,841 multiz5way,1091 nucleosome,218 phastConsElements5way,340 tRNAs,364 windowmaskerSdust,56 follows cons5way,412 est,52 intronEst,130 mrna,33 multiz5way,413 refGene,70 transcriptome,72 xenoRefGene,49 for 25mersRepeats,109 augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 blastHg18KG,149 chainCaePb1,215 chainCaePb1,579 chainCaeRem2,215 chainCaeRem2,579 chainCb3,215 chainCb3,579 chainPriPac1,215 chainPriPac1,579 chainSelf,227 cons5way,193 cons5way,626 cons5way,671 cons5way,704 cons5way,716 cons5way,730 cons5way,779 cons5way,821 cons5way,917 cons5way,923 cons5way,975 cons5way,1240 cytoBandIdeo,5 est,56 est,114 est,185 est,216 est,238 est,400 est,411 est,451 gc5Base,64 intronEst,110 intronEst,134 intronEst,189 intronEst,260 intronEst,291 intronEst,313 intronEst,475 intronEst,486 intronEst,526 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,337 mrna,350 multiz5way,194 multiz5way,627 multiz5way,672 multiz5way,705 multiz5way,717 multiz5way,731 multiz5way,780 multiz5way,822 multiz5way,918 multiz5way,924 multiz5way,976 multiz5way,1241 netCaePb1,26 netCaePb1,37 netCaePb1,42 netCaePb1,176 netCaeRem2,26 netCaeRem2,37 netCaeRem2,42 netCaeRem2,176 netCb3,26 netCb3,37 netCb3,42 netCb3,176 netPriPac1,26 netPriPac1,37 netPriPac1,42 netPriPac1,176 nucleosome,257 nucleosomeAdjustedCoverage,97 nucleosomeAdjustedCoverage,127 nucleosomeControlCoverage,66 nucleosomeControlCoverage,132 nucleosomeControlCoverage,146 nucleosomeDensity,96 nucleosomeStringency,69 phastConsElements5way,84 phastConsElements5way,132 phastConsElements5way,138 refGene,43 refGene,59 refGene,74 refGene,234 rmsk,25 rmsk,259 rmsk,281 rmsk,293 sangerGene,91 sangerPseudoGene,61 sangerRnaGene,86 sibTxGraph,30 sibTxGraph,122 sibTxGraph,143 sibTxGraph,154 sibTxGraph,162 sibTxGraph,180 sibTxGraph,222 simpleRepeat,30 simpleRepeat,56 tRNAs,100 tRNAs,230 tRNAs,447 transcriptome,76 transcriptome,82 transcriptome,97 transcriptome,141 transcriptome,188 transcriptome,209 transcriptome,220 transcriptome,228 transcriptome,246 transcriptome,306 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 xenoRefGene,20 xenoRefGene,53 xenoRefGene,175 form phastConsElements5way,291 format chainCaePb1,331 chainCaeRem2,331 chainCb3,331 chainPriPac1,331 chainSelf,322 nucleosomeAdjustedCoverage,123 formatted nucleosomeAdjustedCoverage,117 formula nucleosomeAdjustedCoverage,38 forth netCaePb1,125 netCaeRem2,125 netCb3,125 netPriPac1,125 found augustusGene,100 cons5way,1036 mrna,384 multiz5way,1037 phastConsElements5way,211 sibTxGraph,88 transcriptome,155 four netCaePb1,193 netCaeRem2,193 netCb3,193 netPriPac1,193 fraction nucleosomeStringency,26 fragment nucleosome,47 nucleosome,129 fragments est,42 gold,4 intronEst,53 monoNucleosomesAntiSense,7 monoNucleosomesSense,7 nucleosome,29 nucleosome,75 nucleosome,93 nucleosome,102 nucleosome,135 nucleosome,153 nucleosome,162 nucleosomeControlCoverage,27 nucleosomeControlCoverage,93 nucleosomeDensity,18 nucleosomeDensity,57 nucleosomeFragmentsAntisense,1 nucleosomeFragmentsAntisense,3 nucleosomeFragmentsSense,1 nucleosomeFragmentsSense,3 sibTxGraph,135 transcriptome,201 frame cons5way,686 multiz5way,687 frames cons5way,670 cons5way,703 cons5way,729 multiz5way,671 multiz5way,704 multiz5way,730 transcriptome,101 from augustusGene,19 blastHg18KG,22 blastHg18KG,40 chainCaePb1,137 chainCaePb1,303 chainCaePb1,441 chainCaePb1,484 chainCaeRem2,137 chainCaeRem2,303 chainCaeRem2,441 chainCaeRem2,484 chainCb3,137 chainCb3,303 chainCb3,441 chainCb3,484 chainPriPac1,137 chainPriPac1,303 chainPriPac1,441 chainPriPac1,484 chainSelf,147 chainSelf,417 chainSelf,449 cons5way,209 cons5way,219 cons5way,438 cons5way,461 cons5way,476 cons5way,628 cons5way,675 cons5way,893 est,396 est,423 est,444 est,554 est,572 est,617 est,700 gold,3 gold,24 gold,49 intronEst,471 intronEst,498 intronEst,519 intronEst,629 intronEst,647 intronEst,692 intronEst,778 mrna,7 mrna,417 multiz5way,210 multiz5way,220 multiz5way,439 multiz5way,462 multiz5way,477 multiz5way,629 multiz5way,676 multiz5way,894 netCaePb1,55 netCaePb1,245 netCaePb1,256 netCaePb1,443 netCaeRem2,55 netCaeRem2,245 netCaeRem2,256 netCaeRem2,443 netCb3,55 netCb3,245 netCb3,256 netCb3,443 netPriPac1,55 netPriPac1,245 netPriPac1,256 netPriPac1,443 nucleosome,4 nucleosome,20 nucleosome,101 nucleosome,161 nucleosome,205 nucleosome,343 nucleosomeAdjustedCoverage,62 nucleosomeAdjustedCoverage,103 nucleosomeAdjustedCoverage,213 nucleosomeControlCoverage,28 nucleosomeControlCoverage,48 nucleosomeControlCoverage,73 nucleosomeControlCoverage,94 nucleosomeControlCoverage,114 nucleosomeControlCoverage,139 nucleosomeControlCoverage,232 nucleosomeDensity,7 nucleosomeDensity,34 nucleosomeDensity,73 nucleosomeDensity,182 nucleosomeStringency,6 nucleosomeStringency,155 phastConsElements5way,72 phastConsElements5way,100 phastConsElements5way,175 refGene,23 refGene,215 refGene,335 rmsk,86 sangerGene,19 sangerGene,26 sangerPseudoGene,18 sangerPseudoGene,25 sangerRnaGene,18 sangerRnaGene,25 sibTxGraph,6 sibTxGraph,216 sibTxGraph,236 tRNAs,130 transcriptome,19 transcriptome,131 transcriptome,300 transcriptome,320 windowmaskerSdust,41 xenoRefGene,27 xenoRefGene,167 xenoRefGene,287 ftp nucleosomeAdjustedCoverage,105 sangerGene,30 sangerPseudoGene,29 sangerRnaGene,29 windowmaskerSdust,44 full chainCaePb1,197 chainCaeRem2,197 chainCb3,197 chainPriPac1,197 chainSelf,209 cons5way,87 cons5way,139 multiz5way,88 multiz5way,140 netCaePb1,69 netCaeRem2,69 netCb3,69 netPriPac1,69 phastConsElements5way,330 rmsk,111 sibTxGraph,70 transcriptome,39 function phastConsElements5way,288 tRNAs,154 functional tRNAs,145 tRNAs,172 tRNAs,221 further sibTxGraph,81 transcriptome,147 furthermore augustusGene,64 g cons5way,1171 gc5Base,20 microsat,115 multiz5way,1172 nucleosome,305 nucleosomeAdjustedCoverage,175 nucleosomeControlCoverage,194 nucleosomeDensity,144 nucleosomeStringency,117 phastConsElements5way,382 simpleRepeat,75 tRNAs,477 g-31-125100-114 chainCaePb1,402 chainCaeRem2,402 chainCb3,402 chainPriPac1,402 ga cons5way,1146 multiz5way,1147 tRNAs,418 gambiae augustusGene,219 gap blastHg18KG,94 blastHg18KG,98 chainCaePb1,36 chainCaePb1,46 chainCaePb1,149 chainCaeRem2,36 chainCaeRem2,46 chainCaeRem2,149 chainCb3,36 chainCb3,46 chainCb3,149 chainPriPac1,36 chainPriPac1,46 chainPriPac1,149 chainSelf,25 chainSelf,35 chainSelf,159 cons5way,250 cons5way,333 cons5way,365 cons5way,576 cons5way,584 gap,1 gap,2 multiz5way,251 multiz5way,334 multiz5way,366 multiz5way,577 multiz5way,585 netCaePb1,162 netCaePb1,174 netCaePb1,197 netCaePb1,215 netCaePb1,230 netCaePb1,247 netCaePb1,323 netCaeRem2,162 netCaeRem2,174 netCaeRem2,197 netCaeRem2,215 netCaeRem2,230 netCaeRem2,247 netCaeRem2,323 netCb3,162 netCb3,174 netCb3,197 netCb3,215 netCb3,230 netCb3,247 netCb3,323 netPriPac1,162 netPriPac1,174 netPriPac1,197 netPriPac1,215 netPriPac1,230 netPriPac1,247 netPriPac1,323 gapless chainCaePb1,369 chainCaeRem2,369 chainCb3,369 chainPriPac1,369 chainSelf,358 gappy cons5way,1062 multiz5way,1063 gaps chainCaePb1,42 chainCaePb1,53 chainCaePb1,66 chainCaePb1,100 chainCaePb1,126 chainCaePb1,172 chainCaePb1,183 chainCaeRem2,42 chainCaeRem2,53 chainCaeRem2,66 chainCaeRem2,100 chainCaeRem2,126 chainCaeRem2,172 chainCaeRem2,183 chainCb3,42 chainCb3,53 chainCb3,66 chainCb3,100 chainCb3,126 chainCb3,172 chainCb3,183 chainPriPac1,42 chainPriPac1,53 chainPriPac1,66 chainPriPac1,100 chainPriPac1,126 chainPriPac1,172 chainPriPac1,183 chainSelf,31 chainSelf,43 chainSelf,108 chainSelf,132 chainSelf,184 chainSelf,195 cons5way,264 cons5way,541 cons5way,547 cons5way,1046 cons5way,1080 gap,11 gold,113 multiz5way,265 multiz5way,542 multiz5way,548 multiz5way,1047 multiz5way,1081 netCaePb1,89 netCaePb1,111 netCaePb1,138 netCaePb1,378 netCaePb1,384 netCaeRem2,89 netCaeRem2,111 netCaeRem2,138 netCaeRem2,378 netCaeRem2,384 netCb3,89 netCb3,111 netCb3,138 netCb3,378 netCb3,384 netPriPac1,89 netPriPac1,111 netPriPac1,138 netPriPac1,378 netPriPac1,384 sibTxGraph,131 transcriptome,197 gary microsat,111 simpleRepeat,71 gb nucleosomeAdjustedCoverage,112 gc gc5Base,1 gc5Base,3 gc5Base,13 gc5Base,30 genbank est,25 est,618 est,725 intronEst,26 intronEst,693 intronEst,803 mrna,8 mrna,23 mrna,355 mrna,442 sibTxGraph,106 sibTxGraph,240 transcriptome,23 transcriptome,38 transcriptome,172 transcriptome,324 transcriptome,356 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 blastHg18KG,11 cons5way,655 cons5way,774 cons5way,786 multiz5way,656 multiz5way,775 multiz5way,787 refGene,7 refGene,44 refGene,75 refGene,156 refGene,171 refGene,176 refGene,204 refGene,227 sangerGene,4 sangerGene,8 sangerGene,17 sangerGene,80 sangerPseudoGene,8 sangerPseudoGene,50 sangerRnaGene,8 sangerRnaGene,75 tRNAs,11 tRNAs,141 transcriptome,7 transcriptome,14 transcriptome,77 transcriptome,120 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 xenoRefGene,185 gene-level sibTxGraph,80 gene-rich gc5Base,36 general cons5way,992 est,500 intronEst,575 multiz5way,993 transcriptome,71 generally rmsk,72 generate cons5way,51 est,611 intronEst,686 multiz5way,52 rmsk,227 rmsk,302 transcriptome,254 generated chainCaePb1,500 chainCaeRem2,500 chainCb3,500 chainPriPac1,500 chainSelf,465 cons5way,820 cons5way,942 multiz5way,821 multiz5way,943 phastConsElements5way,83 phastConsElements5way,232 refGene,339 rmsk,248 sibTxGraph,99 transcriptome,277 xenoRefGene,291 generating augustusGene,189 genes augustusGene,8 augustusGene,44 blastHg18KG,9 blastHg18KG,27 blastHg18KG,33 blastHg18KG,44 cons5way,790 cons5way,792 est,45 intronEst,56 multiz5way,791 multiz5way,793 refGene,2 refGene,4 refGene,5 refGene,12 refGene,21 refGene,242 refGene,250 refGene,261 sangerGene,2 sangerGene,6 sangerGene,13 sangerPseudoGene,6 sangerPseudoGene,13 sangerRnaGene,6 sangerRnaGene,13 sibTxGraph,40 simpleRepeat,41 tRNAs,2 tRNAs,5 tRNAs,9 tRNAs,18 tRNAs,174 tRNAs,244 tRNAs,286 tRNAs,304 tRNAs,376 tRNAs,424 tRNAs,453 tRNAs,485 transcriptome,5 transcriptome,85 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,194 xenoRefGene,202 xenoRefGene,213 genesc cons5way,798 cons5way,803 cons5way,808 multiz5way,799 multiz5way,804 multiz5way,809 genesp cons5way,813 multiz5way,814 genet rmsk,325 genetic rmsk,88 genetics cons5way,1246 multiz5way,1247 genome 25mersRepeats,45 25mersRepeats,50 25mersRepeats,136 augustusGene,31 blastHg18KG,51 chainCaePb1,33 chainCaePb1,167 chainCaePb1,450 chainCaePb1,611 chainCaeRem2,33 chainCaeRem2,167 chainCaeRem2,450 chainCaeRem2,611 chainCb3,33 chainCb3,167 chainCb3,450 chainCb3,611 chainPriPac1,33 chainPriPac1,167 chainPriPac1,450 chainPriPac1,611 chainSelf,20 chainSelf,64 chainSelf,86 chainSelf,179 chainSelf,302 chainSelf,551 cons5way,120 cons5way,308 cons5way,501 cons5way,677 cons5way,886 cons5way,983 cons5way,1200 cons5way,1337 est,28 est,623 est,748 gap,53 gold,19 gold,152 intronEst,29 intronEst,39 intronEst,698 intronEst,826 mrna,26 mrna,363 mrna,465 multiz5way,121 multiz5way,309 multiz5way,502 multiz5way,678 multiz5way,887 multiz5way,984 multiz5way,1201 multiz5way,1338 netCaePb1,33 netCaePb1,44 netCaePb1,277 netCaePb1,524 netCaeRem2,33 netCaeRem2,44 netCaeRem2,277 netCaeRem2,524 netCb3,33 netCb3,44 netCb3,277 netCb3,524 netPriPac1,33 netPriPac1,44 netPriPac1,277 netPriPac1,524 nucleosome,112 nucleosome,284 nucleosome,325 nucleosomeAdjustedCoverage,23 nucleosomeAdjustedCoverage,91 nucleosomeAdjustedCoverage,154 nucleosomeAdjustedCoverage,195 nucleosomeControlCoverage,76 nucleosomeControlCoverage,142 nucleosomeControlCoverage,173 nucleosomeControlCoverage,214 nucleosomeDensity,53 nucleosomeDensity,92 nucleosomeDensity,123 nucleosomeDensity,164 nucleosomeStringency,96 nucleosomeStringency,137 phastConsElements5way,65 phastConsElements5way,197 phastConsElements5way,411 phastConsElements5way,496 phastConsElements5way,546 refGene,274 refGene,358 sibTxGraph,114 transcriptome,180 xenoRefGene,226 xenoRefGene,309 genomes chainCaePb1,308 chainCaePb1,548 chainCaePb1,581 chainCaeRem2,308 chainCaeRem2,548 chainCaeRem2,581 chainCb3,308 chainCb3,548 chainCb3,581 chainPriPac1,308 chainPriPac1,548 chainPriPac1,581 chainSelf,513 cons5way,1199 cons5way,1280 multiz5way,1200 multiz5way,1281 netCaePb1,486 netCaeRem2,486 netCb3,486 netPriPac1,486 phastConsElements5way,410 phastConsElements5way,446 refGene,385 windowmaskerSdust,105 xenoRefGene,378 genomic chainCaePb1,516 chainCaeRem2,516 chainCb3,516 chainPriPac1,516 chainSelf,481 cons5way,390 cons5way,395 cons5way,463 cons5way,479 cons5way,1307 est,91 est,398 est,578 est,689 intronEst,166 intronEst,473 intronEst,653 intronEst,764 mrna,335 mrna,405 multiz5way,391 multiz5way,396 multiz5way,464 multiz5way,480 multiz5way,1308 netCaePb1,181 netCaeRem2,181 netCb3,181 netPriPac1,181 nucleosome,27 phastConsElements5way,489 phastConsElements5way,516 refGene,212 refGene,324 tRNAs,108 tRNAs,379 tRNAs,426 tRNAs,455 tRNAs,487 transcriptome,128 windowmaskerSdust,3 xenoRefGene,164 xenoRefGene,276 genomics chainCaePb1,14 chainCaeRem2,14 chainCb3,14 chainPriPac1,14 cons5way,8 cons5wayViewalign,9 cons5wayViewelements,9 cons5wayViewphastcons,10 multiz5way,9 netCaePb1,14 netCaeRem2,14 netCb3,14 netPriPac1,14 phastCons5way,10 phastConsElements5way,9 genuine intronEst,107 gertz chainCaePb1,458 chainCaePb1,568 chainCaeRem2,458 chainCaeRem2,568 chainCb3,458 chainCb3,568 chainPriPac1,458 chainPriPac1,568 windowmaskerSdust,92 gff sangerGene,75 sangerPseudoGene,45 sangerRnaGene,70 gigabases tRNAs,96 giri rmsk,92 rmsk,292 gish blastHg18KG,157 given nucleosomeAdjustedCoverage,34 nucleosomeStringency,33 nucleosomeStringency,51 go est,406 intronEst,481 mrna,343 refGene,223 xenoRefGene,181 gold gold,106 golden gold,89 gr xenoRefGene,323 graph cons5way,189 gc5Base,59 gc5Base,78 multiz5way,190 sibTxGraph,5 sibTxGraph,140 sibTxGraph,150 transcriptome,206 transcriptome,216 transcriptome,250 graphical netCaePb1,128 netCaeRem2,128 netCb3,128 netPriPac1,128 refGene,137 rmsk,181 sibTxGraph,50 graphs sibTxGraph,19 sibTxGraph,85 sibTxGraph,97 sibTxGraph,183 sibTxGraph,196 grayscale cons5way,126 cons5way,153 multiz5way,127 multiz5way,154 green cons5way,452 multiz5way,453 phastConsElements5way,483 grey 25mersRepeats,33 25mersRepeats,79 tRNAs,206 group augustusGene,198 augustusGene,235 chainCaePb1,361 chainCaeRem2,361 chainCb3,361 chainPriPac1,361 chainSelf,350 cons5way,1104 multiz5way,1105 phastConsElements5way,358 groups augustusGene,194 gt intronEst,84 tRNAs,165 gtrnadb tRNAs,111 tRNAs,332 tRNAs,370 guanine gc5Base,21 guess tRNAs,256 guided transcriptome,261 guides tRNAs,261 h cons5way,1181 multiz5way,1182 nucleosome,299 nucleosomeAdjustedCoverage,169 nucleosomeControlCoverage,188 nucleosomeDensity,138 nucleosomeStringency,111 phastConsElements5way,392 phastConsElements5way,482 handling cons5way,1077 multiz5way,1078 hardison chainCaePb1,443 chainCaePb1,601 chainCaeRem2,443 chainCaeRem2,601 chainCb3,443 chainCb3,601 chainPriPac1,443 chainPriPac1,601 chainSelf,419 chainSelf,541 cons5way,1327 multiz5way,1328 netCaePb1,445 netCaePb1,514 netCaeRem2,445 netCaeRem2,514 netCb3,445 netCb3,514 netPriPac1,445 netPriPac1,514 phastConsElements5way,536 hart xenoRefGene,334 has cons5way,325 cons5way,361 cons5way,1052 est,117 intronEst,83 intronEst,192 mrna,63 multiz5way,326 multiz5way,362 multiz5way,1053 nucleosomeControlCoverage,55 nucleosomeControlCoverage,121 refGene,89 rmsk,212 sibTxGraph,151 transcriptome,217 xenoRefGene,68 haussler augustusGene,292 chainCaePb1,489 chainCaePb1,534 chainCaePb1,603 chainCaeRem2,489 chainCaeRem2,534 chainCaeRem2,603 chainCb3,489 chainCb3,534 chainCb3,603 chainPriPac1,489 chainPriPac1,534 chainPriPac1,603 chainSelf,454 chainSelf,499 chainSelf,543 cons5way,907 cons5way,1213 cons5way,1266 cons5way,1329 multiz5way,908 multiz5way,1214 multiz5way,1267 multiz5way,1330 netCaePb1,472 netCaePb1,516 netCaeRem2,472 netCaeRem2,516 netCb3,472 netCb3,516 netPriPac1,472 netPriPac1,516 phastConsElements5way,432 phastConsElements5way,538 have chainCaePb1,291 chainCaeRem2,291 chainCb3,291 chainPriPac1,291 intronEst,7 phastConsElements5way,230 rmsk,69 sibTxGraph,256 tRNAs,181 tRNAs,214 transcriptome,340 having est,662 est,671 intronEst,737 intronEst,746 mrna,378 mrna,387 refGene,297 refGene,306 xenoRefGene,249 xenoRefGene,258 height cons5way,104 multiz5way,105 help cons5way,191 gc5Base,61 multiz5way,192 refGene,60 sibTxGraph,215 transcriptome,299 helpful est,145 intronEst,220 mrna,91 here transcriptome,140 hg18 blastHg18KG,31 hiatt xenoRefGene,324 hidden augustusGene,324 cons5way,34 cons5way,1148 cons5way,1216 multiz5way,35 multiz5way,1149 multiz5way,1217 phastConsElements5way,43 hide refGene,240 xenoRefGene,192 hierarchy netCaePb1,314 netCaeRem2,314 netCb3,314 netPriPac1,314 high cons5way,1028 cons5way,1058 gc5Base,29 multiz5way,1029 multiz5way,1059 high-performance sibTxGraph,203 transcriptome,287 high-resolution nucleosome,311 nucleosomeAdjustedCoverage,181 nucleosomeControlCoverage,200 nucleosomeDensity,150 nucleosomeStringency,123 higher cons5way,159 multiz5way,160 netCaePb1,346 netCaeRem2,346 netCb3,346 netPriPac1,346 rmsk,200 higher-level netCaePb1,363 netCaeRem2,363 netCb3,363 netPriPac1,363 higher-scoring netCaePb1,307 netCaePb1,326 netCaeRem2,307 netCaeRem2,326 netCb3,307 netCb3,326 netPriPac1,307 netPriPac1,326 highest est,664 intronEst,739 mrna,380 refGene,299 xenoRefGene,251 highest-scoring netCaePb1,80 netCaePb1,273 netCaeRem2,80 netCaeRem2,273 netCb3,80 netCb3,273 netPriPac1,80 netPriPac1,273 highlight cons5way,180 est,325 gc5Base,49 intronEst,400 mrna,271 multiz5way,181 highlighted est,295 est,313 intronEst,370 intronEst,388 mrna,241 mrna,259 highly microsat,40 tRNAs,69 highly-conserved cons5way,1018 multiz5way,1019 hillier cons5way,1184 multiz5way,1185 phastConsElements5way,395 hinrichs chainCaePb1,530 chainCaeRem2,530 chainCb3,530 chainPriPac1,530 chainSelf,495 cons5way,1174 cons5way,1262 multiz5way,1175 multiz5way,1263 netCaePb1,468 netCaeRem2,468 netCb3,468 netPriPac1,468 phastConsElements5way,385 phastConsElements5way,428 hinxton gap,49 gold,148 hiram 25mersRepeats,133 cons5way,1127 gc5Base,82 multiz5way,1128 nucleosome,281 nucleosomeAdjustedCoverage,151 nucleosomeControlCoverage,170 nucleosomeDensity,120 nucleosomeStringency,93 his chainSelf,428 histogram cons5way,101 multiz5way,102 hold nucleosome,233 honeybee1 augustusGene,217 hou chainCaePb1,431 chainCaeRem2,431 chainCb3,431 chainPriPac1,431 chainSelf,407 cons5way,1176 multiz5way,1177 netCaePb1,433 netCaeRem2,433 netCb3,433 netPriPac1,433 phastConsElements5way,347 phastConsElements5way,387 how netCaePb1,374 netCaePb1,391 netCaeRem2,374 netCaeRem2,391 netCb3,374 netCb3,391 netPriPac1,374 netPriPac1,391 however cons5way,213 multiz5way,214 hubley rmsk,290 human augustusGene,205 augustusGene,210 augustusGene,276 blastHg18KG,1 blastHg18KG,3 blastHg18KG,42 blastHg18KG,50 chainCaePb1,547 chainCaeRem2,547 chainCb3,547 chainPriPac1,547 chainSelf,512 cons5way,1279 multiz5way,1280 netCaePb1,485 netCaeRem2,485 netCb3,485 netPriPac1,485 phastConsElements5way,445 human-mouse chainCaePb1,607 chainCaeRem2,607 chainCb3,607 chainPriPac1,607 chainSelf,547 cons5way,1333 multiz5way,1334 netCaePb1,520 netCaeRem2,520 netCb3,520 netPriPac1,520 phastConsElements5way,542 hybridizes est,468 intronEst,543 i est,718 intronEst,796 mrna,435 transcriptome,349 i.e cons5way,984 intronEst,72 multiz5way,985 tRNAs,148 ichikawa nucleosome,290 nucleosomeAdjustedCoverage,160 nucleosomeControlCoverage,179 nucleosomeDensity,129 nucleosomeStringency,102 identical chainSelf,60 identification tRNAs,480 identified blastHg18KG,28 chainSelf,423 cons5way,614 est,668 intronEst,743 multiz5way,615 refGene,303 tRNAs,6 xenoRefGene,255 identifying tRNAs,421 identity est,666 est,674 est,686 intronEst,741 intronEst,749 intronEst,761 microsat,71 mrna,382 mrna,390 mrna,402 refGene,301 refGene,309 refGene,321 xenoRefGene,253 xenoRefGene,261 xenoRefGene,273 ideogram cytoBandIdeo,3 cytoBandIdeo,4 if cons5way,564 cons5way,579 cons5way,582 cons5way,609 cons5way,706 cons5way,732 est,268 est,280 est,296 est,332 est,349 intronEst,343 intronEst,355 intronEst,371 intronEst,407 intronEst,424 mrna,214 mrna,226 mrna,242 mrna,278 mrna,295 multiz5way,565 multiz5way,580 multiz5way,583 multiz5way,610 multiz5way,707 multiz5way,733 refGene,253 xenoRefGene,205 ii215-25 augustusGene,338 images tRNAs,319 imperfect simpleRepeat,19 improve augustusGene,302 improved tRNAs,448 improving cons5way,1075 multiz5way,1076 in 25mersRepeats,13 25mersRepeats,32 25mersRepeats,48 25mersRepeats,91 augustusGene,101 blastHg18KG,29 chainCaePb1,54 chainCaePb1,76 chainCaePb1,108 chainCaePb1,116 chainCaePb1,131 chainCaePb1,150 chainCaePb1,153 chainCaePb1,193 chainCaePb1,210 chainCaePb1,239 chainCaePb1,269 chainCaePb1,281 chainCaePb1,323 chainCaePb1,418 chainCaePb1,448 chainCaePb1,543 chainCaeRem2,54 chainCaeRem2,76 chainCaeRem2,108 chainCaeRem2,116 chainCaeRem2,131 chainCaeRem2,150 chainCaeRem2,153 chainCaeRem2,193 chainCaeRem2,210 chainCaeRem2,239 chainCaeRem2,269 chainCaeRem2,281 chainCaeRem2,323 chainCaeRem2,418 chainCaeRem2,448 chainCaeRem2,543 chainCb3,54 chainCb3,76 chainCb3,108 chainCb3,116 chainCb3,131 chainCb3,150 chainCb3,153 chainCb3,193 chainCb3,210 chainCb3,239 chainCb3,269 chainCb3,281 chainCb3,323 chainCb3,418 chainCb3,448 chainCb3,543 chainPriPac1,54 chainPriPac1,76 chainPriPac1,108 chainPriPac1,116 chainPriPac1,131 chainPriPac1,150 chainPriPac1,153 chainPriPac1,193 chainPriPac1,210 chainPriPac1,239 chainPriPac1,269 chainPriPac1,281 chainPriPac1,323 chainPriPac1,418 chainPriPac1,448 chainPriPac1,543 chainSelf,44 chainSelf,116 chainSelf,123 chainSelf,137 chainSelf,160 chainSelf,165 chainSelf,205 chainSelf,222 chainSelf,251 chainSelf,281 chainSelf,293 chainSelf,394 chainSelf,508 cons5way,18 cons5way,86 cons5way,129 cons5way,138 cons5way,145 cons5way,152 cons5way,174 cons5way,201 cons5way,236 cons5way,268 cons5way,272 cons5way,290 cons5way,304 cons5way,317 cons5way,331 cons5way,346 cons5way,353 cons5way,363 cons5way,369 cons5way,383 cons5way,393 cons5way,405 cons5way,442 cons5way,465 cons5way,497 cons5way,510 cons5way,548 cons5way,569 cons5way,605 cons5way,632 cons5way,679 cons5way,698 cons5way,884 cons5way,961 cons5way,1037 cons5way,1061 cons5way,1156 cons5way,1193 cons5way,1219 cons5way,1225 cons5way,1275 est,24 est,37 est,60 est,151 est,172 est,195 est,205 est,223 est,265 est,387 est,499 est,547 est,657 gap,12 gap,48 gap,56 gc5Base,5 gc5Base,26 gc5Base,43 gold,58 gold,75 gold,114 gold,147 gold,155 intronEst,25 intronEst,48 intronEst,80 intronEst,94 intronEst,138 intronEst,226 intronEst,247 intronEst,270 intronEst,280 intronEst,298 intronEst,340 intronEst,462 intronEst,574 intronEst,622 intronEst,732 intronEst,768 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,211 mrna,373 multiz5way,19 multiz5way,87 multiz5way,130 multiz5way,139 multiz5way,146 multiz5way,153 multiz5way,175 multiz5way,202 multiz5way,237 multiz5way,269 multiz5way,273 multiz5way,291 multiz5way,305 multiz5way,318 multiz5way,332 multiz5way,347 multiz5way,354 multiz5way,364 multiz5way,370 multiz5way,384 multiz5way,394 multiz5way,406 multiz5way,443 multiz5way,466 multiz5way,498 multiz5way,511 multiz5way,549 multiz5way,570 multiz5way,606 multiz5way,633 multiz5way,680 multiz5way,699 multiz5way,885 multiz5way,962 multiz5way,1038 multiz5way,1062 multiz5way,1157 multiz5way,1194 multiz5way,1220 multiz5way,1226 multiz5way,1276 netCaePb1,51 netCaePb1,68 netCaePb1,86 netCaePb1,91 netCaePb1,100 netCaePb1,112 netCaePb1,126 netCaePb1,168 netCaePb1,185 netCaePb1,216 netCaePb1,234 netCaePb1,248 netCaePb1,275 netCaePb1,316 netCaePb1,324 netCaePb1,340 netCaePb1,373 netCaePb1,385 netCaePb1,481 netCaeRem2,51 netCaeRem2,68 netCaeRem2,86 netCaeRem2,91 netCaeRem2,100 netCaeRem2,112 netCaeRem2,126 netCaeRem2,168 netCaeRem2,185 netCaeRem2,216 netCaeRem2,234 netCaeRem2,248 netCaeRem2,275 netCaeRem2,316 netCaeRem2,324 netCaeRem2,340 netCaeRem2,373 netCaeRem2,385 netCaeRem2,481 netCb3,51 netCb3,68 netCb3,86 netCb3,91 netCb3,100 netCb3,112 netCb3,126 netCb3,168 netCb3,185 netCb3,216 netCb3,234 netCb3,248 netCb3,275 netCb3,316 netCb3,324 netCb3,340 netCb3,373 netCb3,385 netCb3,481 netPriPac1,51 netPriPac1,68 netPriPac1,86 netPriPac1,91 netPriPac1,100 netPriPac1,112 netPriPac1,126 netPriPac1,168 netPriPac1,185 netPriPac1,216 netPriPac1,234 netPriPac1,248 netPriPac1,275 netPriPac1,316 netPriPac1,324 netPriPac1,340 netPriPac1,373 netPriPac1,385 netPriPac1,481 nucleosome,30 nucleosome,189 nucleosome,212 nucleosome,239 nucleosomeAdjustedCoverage,21 nucleosomeStringency,43 nucleosomeStringency,60 phastConsElements5way,63 phastConsElements5way,212 phastConsElements5way,303 phastConsElements5way,316 phastConsElements5way,404 phastConsElements5way,441 refGene,292 rmsk,45 rmsk,63 rmsk,97 rmsk,101 rmsk,110 rmsk,179 rmsk,276 rmsk,310 sangerGene,73 sangerPseudoGene,43 sangerRnaGene,68 sibTxGraph,37 sibTxGraph,69 tRNAs,155 tRNAs,158 tRNAs,194 tRNAs,203 tRNAs,222 tRNAs,240 tRNAs,249 tRNAs,378 tRNAs,425 tRNAs,454 tRNAs,486 transcriptome,70 transcriptome,271 windowmaskerSdust,27 xenoRefGene,244 include est,133 est,327 est,351 intronEst,208 intronEst,402 intronEst,426 mrna,79 mrna,273 mrna,297 rmsk,130 rmsk,143 included augustusGene,160 blastHg18KG,115 blastHg18KG,138 windowmaskerSdust,26 includes rmsk,168 transcriptome,52 including cons5way,955 est,7 intronEst,116 multiz5way,956 rmsk,159 indefinitely cons5way,421 multiz5way,422 indels cons5way,345 microsat,74 multiz5way,346 independent cons5way,344 multiz5way,345 indicate 25mersRepeats,99 chainCaePb1,99 chainCaePb1,204 chainCaeRem2,99 chainCaeRem2,204 chainCb3,99 chainCb3,204 chainPriPac1,99 chainPriPac1,204 chainSelf,107 chainSelf,216 cons5way,158 cons5way,543 est,71 mrna,52 multiz5way,159 multiz5way,544 sibTxGraph,47 tRNAs,137 tRNAs,187 indicates cons5way,142 est,79 intronEst,144 intronEst,154 multiz5way,143 refGene,81 xenoRefGene,60 individual chainCaePb1,201 chainCaeRem2,201 chainCb3,201 chainPriPac1,201 chainSelf,213 netCaePb1,183 netCaeRem2,183 netCb3,183 netPriPac1,183 nucleosome,237 nucleosomeControlCoverage,52 nucleosomeControlCoverage,118 inferred nucleosome,96 nucleosome,156 information augustusGene,36 blastHg18KG,151 cons5way,186 cons5way,227 cons5way,1031 est,78 est,402 gc5Base,55 intronEst,153 intronEst,477 microsat,97 mrna,339 multiz5way,187 multiz5way,228 multiz5way,1032 netCaePb1,146 netCaePb1,159 netCaePb1,165 netCaePb1,341 netCaeRem2,146 netCaeRem2,159 netCaeRem2,165 netCaeRem2,341 netCb3,146 netCb3,159 netCb3,165 netCb3,341 netPriPac1,146 netPriPac1,159 netPriPac1,165 netPriPac1,341 refGene,236 rmsk,89 rmsk,283 sibTxGraph,82 simpleRepeat,58 transcriptome,143 transcriptome,148 xenoRefGene,177 infringing nucleosomeStringency,57 initial tRNAs,47 transcriptome,264 initiate rmsk,275 initio augustusGene,4 augustusGene,17 input windowmaskerSdust,61 windowmaskerSdust,70 insect cons5way,1195 multiz5way,1196 phastConsElements5way,406 inserted chainCaePb1,293 chainCaeRem2,293 chainCb3,293 chainPriPac1,293 netCaePb1,397 netCaeRem2,397 netCb3,397 netPriPac1,397 insertion chainCaePb1,115 chainCaeRem2,115 chainCb3,115 chainPriPac1,115 chainSelf,122 cons5way,299 cons5way,493 multiz5way,300 multiz5way,494 rmsk,193 inside cons5way,470 multiz5way,471 inspected tRNAs,228 instances nucleosome,248 nucleosomeStringency,41 instancescolor nucleosome,224 instead refGene,168 xenoRefGene,120 institute gap,47 gold,146 rmsk,91 sangerGene,29 sangerPseudoGene,28 sangerRnaGene,28 sibTxGraph,8 sibTxGraph,221 sibTxGraph,228 transcriptome,305 transcriptome,312 integrated tRNAs,27 interface sibTxGraph,93 transcriptome,160 international est,707 intronEst,785 mrna,424 internet rmsk,245 interspersed rmsk,26 rmsk,125 rmsk,133 intervals windowmaskerSdust,4 into chainCaePb1,329 chainCaePb1,341 chainCaePb1,359 chainCaeRem2,329 chainCaeRem2,341 chainCaeRem2,359 chainCb3,329 chainCb3,341 chainCb3,359 chainPriPac1,329 chainPriPac1,341 chainPriPac1,359 chainSelf,320 chainSelf,332 chainSelf,348 est,255 est,428 est,435 est,580 gap,32 gold,30 gold,131 intronEst,330 intronEst,503 intronEst,510 intronEst,655 mrna,201 netCaePb1,300 netCaeRem2,300 netCb3,300 netPriPac1,300 nucleosomeAdjustedCoverage,118 tRNAs,309 windowmaskerSdust,80 intron augustusGene,88 augustusGene,330 est,630 intronEst,71 intronEst,705 sangerGene,55 sibTxGraph,158 transcriptome,224 introns est,647 intronEst,722 sibTxGraph,48 inv netCaePb1,221 netCaeRem2,221 netCb3,221 netPriPac1,221 inversions chainCaePb1,72 chainCaePb1,138 chainCaeRem2,72 chainCaeRem2,138 chainCb3,72 chainCb3,138 chainPriPac1,72 chainPriPac1,138 chainSelf,148 inverted netCaePb1,359 netCaeRem2,359 netCb3,359 netPriPac1,359 involve chainCaePb1,128 chainCaeRem2,128 chainCb3,128 chainPriPac1,128 chainSelf,134 involved tRNAs,193 is 25mersRepeats,51 25mersRepeats,68 25mersRepeats,77 25mersRepeats,89 25mersRepeats,112 blastHg18KG,141 cons5way,150 cons5way,566 cons5way,577 cons5way,586 cons5way,594 cons5way,599 cons5way,603 cons5way,613 cons5way,657 cons5way,713 cons5way,722 cons5way,740 cons5way,932 cons5way,1134 est,284 est,300 est,336 est,353 est,421 est,433 est,442 est,462 est,591 est,635 gap,25 gc5Base,32 gold,124 intronEst,75 intronEst,98 intronEst,359 intronEst,375 intronEst,411 intronEst,428 intronEst,496 intronEst,508 intronEst,517 intronEst,537 intronEst,666 intronEst,710 microsat,88 mrna,230 mrna,246 mrna,282 mrna,299 multiz5way,151 multiz5way,567 multiz5way,578 multiz5way,587 multiz5way,595 multiz5way,600 multiz5way,604 multiz5way,614 multiz5way,658 multiz5way,714 multiz5way,723 multiz5way,741 multiz5way,933 multiz5way,1135 netCaePb1,35 netCaePb1,54 netCaePb1,166 netCaeRem2,35 netCaeRem2,54 netCaeRem2,166 netCb3,35 netCb3,54 netCb3,166 netPriPac1,35 netPriPac1,54 netPriPac1,166 nucleosome,260 nucleosomeAdjustedCoverage,33 nucleosomeAdjustedCoverage,116 nucleosomeAdjustedCoverage,130 nucleosomeControlCoverage,149 nucleosomeDensity,99 nucleosomeStringency,32 nucleosomeStringency,72 phastConsElements5way,24 phastConsElements5way,187 phastConsElements5way,242 phastConsElements5way,325 refGene,124 rmsk,95 rmsk,308 sibTxGraph,52 sibTxGraph,68 sibTxGraph,76 sibTxGraph,141 sibTxGraph,176 sibTxGraph,232 simpleRepeat,28 tRNAs,25 tRNAs,125 transcriptome,25 transcriptome,164 transcriptome,207 transcriptome,242 transcriptome,251 transcriptome,260 transcriptome,316 windowmaskerSdust,25 windowmaskerSdust,39 iseli sibTxGraph,213 transcriptome,297 isolated est,422 intronEst,497 sibTxGraph,134 transcriptome,200 isotype tRNAs,248 issue est,735 intronEst,813 mrna,452 refGene,397 tRNAs,388 transcriptome,366 xenoRefGene,356 xenoRefGene,390 it chainCaePb1,49 chainCaeRem2,49 chainCb3,49 chainPriPac1,49 est,93 est,107 est,484 intronEst,168 intronEst,182 intronEst,559 netCaePb1,34 netCaePb1,220 netCaePb1,232 netCaeRem2,34 netCaeRem2,220 netCaeRem2,232 netCb3,34 netCb3,220 netCb3,232 netPriPac1,34 netPriPac1,220 netPriPac1,232 sibTxGraph,231 transcriptome,315 item refGene,98 xenoRefGene,77 items est,65 est,138 est,148 est,331 intronEst,213 intronEst,223 intronEst,406 mrna,46 mrna,84 mrna,94 mrna,277 netCaePb1,184 netCaeRem2,184 netCb3,184 netPriPac1,184 nucleosome,238 refGene,152 xenoRefGene,104 its 25mersRepeats,81 phastConsElements5way,249 phastConsElements5way,257 itself chainSelf,22 chainSelf,306 j blastHg18KG,170 cons5way,1144 cons5way,1183 est,722 intronEst,800 mrna,439 multiz5way,1145 multiz5way,1184 nucleosome,291 nucleosome,295 nucleosomeAdjustedCoverage,161 nucleosomeAdjustedCoverage,165 nucleosomeControlCoverage,180 nucleosomeControlCoverage,184 nucleosomeDensity,130 nucleosomeDensity,134 nucleosomeStringency,103 nucleosomeStringency,107 phastConsElements5way,394 rmsk,99 rmsk,312 tRNAs,429 transcriptome,353 xenoRefGene,335 ja nucleosome,303 nucleosomeAdjustedCoverage,173 nucleosomeControlCoverage,192 nucleosomeDensity,142 nucleosomeStringency,115 jan chainCaePb1,6 chainCaePb1,24 chainCaePb1,584 chainCaePb1,614 chainCaeRem2,584 chainCaeRem2,614 chainCb3,6 chainCb3,24 chainCb3,584 chainCb3,614 chainPriPac1,584 chainPriPac1,614 chainSelf,554 cons5way,57 cons5way,64 cons5way,74 cons5way,1164 cons5way,1340 est,731 intronEst,809 microsat,129 mrna,448 multiz5way,58 multiz5way,65 multiz5way,75 multiz5way,1165 multiz5way,1341 netCaePb1,6 netCaePb1,57 netCaePb1,527 netCaeRem2,527 netCb3,6 netCb3,57 netCb3,527 netPriPac1,527 phastConsElements5way,549 refGene,393 simpleRepeat,89 tRNAs,385 transcriptome,362 windowmaskerSdust,108 xenoRefGene,353 xenoRefGene,386 jim blastHg18KG,183 blastHg18KG,196 chainCaePb1,480 chainCaePb1,505 chainCaeRem2,480 chainCaeRem2,505 chainCb3,480 chainCb3,505 chainPriPac1,480 chainPriPac1,505 chainSelf,445 chainSelf,470 cons5way,1112 multiz5way,1113 netCaePb1,422 netCaePb1,461 netCaeRem2,422 netCaeRem2,461 netCb3,422 netCb3,461 netPriPac1,422 netPriPac1,461 phastConsElements5way,366 joined chainCaePb1,84 chainCaeRem2,84 chainCb3,84 chainPriPac1,84 chainSelf,92 jointly gap,43 gold,142 journal rmsk,320 js cons5way,1173 multiz5way,1174 phastConsElements5way,384 jul nucleosome,328 nucleosomeAdjustedCoverage,198 nucleosomeControlCoverage,217 nucleosomeDensity,167 nucleosomeStringency,140 jun tRNAs,408 jurka rmsk,98 rmsk,311 k augustusGene,268 cons5way,1179 cons5way,1351 multiz5way,1180 multiz5way,1352 nucleosome,301 nucleosome,307 nucleosomeAdjustedCoverage,171 nucleosomeAdjustedCoverage,177 nucleosomeControlCoverage,190 nucleosomeControlCoverage,196 nucleosomeDensity,140 nucleosomeDensity,146 nucleosomeStringency,113 nucleosomeStringency,119 phastConsElements5way,390 phastConsElements5way,480 karsch-mizrachi est,717 intronEst,795 mrna,434 transcriptome,348 kd refGene,370 xenoRefGene,321 xenoRefGene,363 kd-tree chainCaePb1,365 chainCaeRem2,365 chainCb3,365 chainPriPac1,365 chainSelf,354 kd-trees chainCaePb1,383 chainCaeRem2,383 chainCb3,383 chainPriPac1,383 chainSelf,372 keeping sibTxGraph,117 transcriptome,183 kent blastHg18KG,184 blastHg18KG,197 chainCaePb1,481 chainCaePb1,506 chainCaePb1,526 chainCaePb1,593 chainCaeRem2,481 chainCaeRem2,506 chainCaeRem2,526 chainCaeRem2,593 chainCb3,481 chainCb3,506 chainCb3,526 chainCb3,593 chainPriPac1,481 chainPriPac1,506 chainPriPac1,526 chainPriPac1,593 chainSelf,446 chainSelf,471 chainSelf,491 chainSelf,533 cons5way,1113 cons5way,1258 cons5way,1319 est,741 intronEst,819 mrna,458 multiz5way,1114 multiz5way,1259 multiz5way,1320 netCaePb1,423 netCaePb1,462 netCaePb1,464 netCaePb1,506 netCaeRem2,423 netCaeRem2,462 netCaeRem2,464 netCaeRem2,506 netCb3,423 netCb3,462 netCb3,464 netCb3,506 netPriPac1,423 netPriPac1,462 netPriPac1,464 netPriPac1,506 phastConsElements5way,367 phastConsElements5way,424 phastConsElements5way,467 phastConsElements5way,528 refGene,351 xenoRefGene,303 kept est,692 mrna,408 refGene,327 sibTxGraph,177 transcriptome,243 xenoRefGene,279 kiontke cons5way,1137 cons5way,1350 multiz5way,1138 multiz5way,1351 km phastConsElements5way,476 xenoRefGene,339 known blastHg18KG,26 refGene,15 xenoRefGene,15 l phastConsElements5way,472 lab 25mersRepeats,117 25mersRepeats,121 augustusGene,252 nucleosome,265 nucleosome,269 nucleosomeAdjustedCoverage,135 nucleosomeAdjustedCoverage,139 nucleosomeControlCoverage,154 nucleosomeControlCoverage,158 nucleosomeDensity,104 nucleosomeDensity,108 nucleosomeStringency,77 nucleosomeStringency,81 tRNAs,338 label refGene,149 refGene,161 refGene,184 xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled refGene,154 xenoRefGene,106 labeling est,376 intronEst,451 labels refGene,99 xenoRefGene,78 lack cons5way,380 multiz5way,381 nucleosome,320 nucleosomeAdjustedCoverage,190 nucleosomeControlCoverage,209 nucleosomeDensity,159 nucleosomeStringency,132 landrum xenoRefGene,336 large cons5way,427 cons5way,449 multiz5way,428 multiz5way,450 largely chainCaePb1,103 chainCaeRem2,103 chainCb3,103 chainPriPac1,103 chainSelf,111 larger cons5way,472 intronEst,146 multiz5way,473 largest netCaePb1,79 netCaeRem2,79 netCb3,79 netPriPac1,79 lavtoaxt chainSelf,325 lavtopsl chainCaePb1,334 chainCaeRem2,334 chainCb3,334 chainPriPac1,334 least blastHg18KG,128 est,683 intronEst,68 intronEst,77 intronEst,758 microsat,29 microsat,78 mrna,399 refGene,318 xenoRefGene,270 left refGene,132 length augustusGene,82 est,38 est,631 intronEst,49 intronEst,81 intronEst,706 transcriptome,40 lengths cons5way,545 cons5way,957 multiz5way,546 multiz5way,958 phastConsElements5way,153 less refGene,282 xenoRefGene,234 level cons5way,519 est,675 intronEst,91 intronEst,750 mrna,391 multiz5way,520 netCaePb1,74 netCaePb1,108 netCaePb1,113 netCaePb1,120 netCaePb1,178 netCaePb1,205 netCaePb1,218 netCaePb1,250 netCaeRem2,74 netCaeRem2,108 netCaeRem2,113 netCaeRem2,120 netCaeRem2,178 netCaeRem2,205 netCaeRem2,218 netCaeRem2,250 netCb3,74 netCb3,108 netCb3,113 netCb3,120 netCb3,178 netCb3,205 netCb3,218 netCb3,250 netPriPac1,74 netPriPac1,108 netPriPac1,113 netPriPac1,120 netPriPac1,178 netPriPac1,205 netPriPac1,218 netPriPac1,250 refGene,83 refGene,310 rmsk,175 xenoRefGene,62 xenoRefGene,262 levels cons5way,160 cons5way,977 multiz5way,161 multiz5way,978 libraries est,528 intronEst,603 rmsk,224 rmsk,299 library rmsk,83 ligation nucleosome,338 nucleosomeAdjustedCoverage,208 nucleosomeControlCoverage,227 nucleosomeDensity,177 nucleosomeStringency,150 light refGene,92 xenoRefGene,71 lighter rmsk,207 lightest nucleosome,207 lightly nucleosome,22 likelihood phastConsElements5way,180 likely augustusGene,111 microsat,17 phastConsElements5way,228 tRNAs,126 tRNAs,169 line cons5way,287 cons5way,322 cons5way,542 multiz5way,288 multiz5way,323 multiz5way,543 netCaePb1,156 netCaeRem2,156 netCb3,156 netPriPac1,156 rmsk,136 line-up netCaePb1,223 netCaeRem2,223 netCb3,223 netPriPac1,223 line-ups netCaePb1,208 netCaeRem2,208 netCb3,208 netPriPac1,208 lineage-specific chainSelf,420 cons5way,298 cons5way,311 cons5way,492 multiz5way,299 multiz5way,312 multiz5way,493 lines chainCaePb1,91 chainCaePb1,98 chainCaePb1,122 chainCaeRem2,91 chainCaeRem2,98 chainCaeRem2,122 chainCb3,91 chainCb3,98 chainCb3,122 chainPriPac1,91 chainPriPac1,98 chainPriPac1,122 chainSelf,99 chainSelf,106 chainSelf,128 netCaePb1,136 netCaeRem2,136 netCb3,136 netPriPac1,136 sibTxGraph,46 link cons5way,192 gc5Base,63 multiz5way,193 refGene,142 lipman blastHg18KG,163 est,719 intronEst,797 mrna,436 transcriptome,350 list est,212 intronEst,287 mrna,158 tRNAs,48 loaded windowmaskerSdust,79 local blastHg18KG,166 chainCaePb1,71 chainCaePb1,144 chainCaeRem2,71 chainCaeRem2,144 chainCb3,71 chainCb3,144 chainPriPac1,71 chainPriPac1,144 chainSelf,154 nucleosomeControlCoverage,21 nucleosomeControlCoverage,87 located simpleRepeat,21 location chainCaePb1,209 chainCaeRem2,209 chainCb3,209 chainPriPac1,209 chainSelf,221 locations chainSelf,61 gap,3 log nucleosomeAdjustedCoverage,26 phastConsElements5way,250 phastConsElements5way,258 phastConsElements5way,293 phastConsElements5way,298 log-odds phastConsElements5way,245 phastConsElements5way,273 logic est,279 intronEst,354 mrna,225 long cons5way,1021 est,646 intronEst,721 multiz5way,1022 rmsk,132 rmsk,137 longer chainCaePb1,41 chainCaeRem2,41 chainCb3,41 chainPriPac1,41 chainSelf,30 gold,31 tRNAs,192 longest cons5way,560 multiz5way,561 netCaePb1,201 netCaeRem2,201 netCb3,201 netPriPac1,201 looking cons5way,1069 multiz5way,1070 loss tRNAs,231 louis gap,58 gold,157 low rmsk,29 rmsk,152 tRNAs,293 lowe tRNAs,337 tRNAs,368 tRNAs,440 lower netCaePb1,177 netCaeRem2,177 netCb3,177 netPriPac1,177 lower-level netCaePb1,348 netCaePb1,354 netCaeRem2,348 netCaeRem2,354 netCb3,348 netCb3,354 netPriPac1,348 netPriPac1,354 ltr rmsk,141 ludwig sibTxGraph,220 transcriptome,304 lw cons5way,1185 multiz5way,1186 phastConsElements5way,396 lysates nucleosome,85 nucleosome,145 m augustusGene,287 augustusGene,289 augustusGene,317 cons5way,1177 multiz5way,1178 phastConsElements5way,388 phastConsElements5way,466 made netCaePb1,456 netCaeRem2,456 netCb3,456 netPriPac1,456 sibTxGraph,257 transcriptome,341 maglott refGene,373 xenoRefGene,366 maintained tRNAs,334 make blastHg18KG,66 est,417 est,483 intronEst,492 intronEst,558 refGene,51 tRNAs,252 making sibTxGraph,59 tRNAs,356 malek nucleosome,302 nucleosomeAdjustedCoverage,172 nucleosomeControlCoverage,191 nucleosomeDensity,141 nucleosomeStringency,114 mammalian xenoRefGene,346 manner cons5way,274 multiz5way,275 many cons5way,1002 est,147 intronEst,106 intronEst,222 mrna,93 multiz5way,1003 netCaePb1,87 netCaeRem2,87 netCb3,87 netPriPac1,87 map chainCaePb1,237 chainCaeRem2,237 chainCb3,237 chainPriPac1,237 chainSelf,65 chainSelf,249 nucleosome,314 nucleosomeAdjustedCoverage,184 nucleosomeControlCoverage,203 nucleosomeDensity,153 nucleosomeStringency,126 mapped augustusGene,298 blastHg18KG,5 cons5way,797 cons5way,802 cons5way,807 cons5way,812 multiz5way,798 multiz5way,803 multiz5way,808 multiz5way,813 nucleosome,104 nucleosome,164 nucleosomeAdjustedCoverage,87 nucleosomeDensity,45 nucleosomeDensity,84 mapping chainSelf,71 cytoBandIdeo,7 gap,4 gc5Base,8 gold,5 monoNucleosomesAntiSense,11 monoNucleosomesSense,11 nucleosome,8 nucleosomeAdjustedCoverage,8 nucleosomeControl,4 nucleosomeControlAntisenseCoverage,11 nucleosomeControlCoverage,7 nucleosomeControlSenseCoverage,11 nucleosomeDensity,11 nucleosomeFragmentsAntisense,7 nucleosomeFragmentsSense,7 nucleosomeStringency,10 mar augustusGene,309 chainCaeRem2,6 chainCaeRem2,24 cons5way,69 multiz5way,70 netCaeRem2,6 netCaeRem2,57 tRNAs,461 march gap,37 gold,136 mario augustusGene,102 augustusGene,283 mark est,504 intronEst,579 marked 25mersRepeats,21 25mersRepeats,90 chainCaePb1,447 chainCaeRem2,447 chainCb3,447 chainPriPac1,447 tRNAs,287 markers microsat,23 marking 25mersRepeats,9 markov augustusGene,325 cons5way,35 cons5way,965 cons5way,1149 cons5way,1217 multiz5way,36 multiz5way,966 multiz5way,1150 multiz5way,1218 phastConsElements5way,44 masked rmsk,71 windowmaskerSdust,5 windowmaskerSdust,16 masker chainCaePb1,578 chainCaeRem2,578 chainCb3,578 chainPriPac1,578 windowmaskerSdust,102 masking chainCaePb1,315 chainCaeRem2,315 chainCb3,315 chainPriPac1,315 match chainCaePb1,214 chainCaeRem2,214 chainCb3,214 chainPriPac1,214 chainSelf,226 est,84 est,289 est,304 est,345 est,363 intronEst,159 intronEst,364 intronEst,379 intronEst,420 intronEst,438 mrna,235 mrna,250 mrna,291 mrna,309 netCaePb1,202 netCaePb1,240 netCaeRem2,202 netCaeRem2,240 netCb3,202 netCb3,240 netPriPac1,202 netPriPac1,240 matched blastHg18KG,126 matches est,72 mrna,53 matching chainCaePb1,217 chainCaeRem2,217 chainCb3,217 chainPriPac1,217 chainSelf,229 est,90 intronEst,165 matrix chainCaePb1,395 chainCaeRem2,395 chainCb3,395 chainPriPac1,395 tRNAs,494 mature est,474 intronEst,549 maximally chainCaePb1,387 chainCaeRem2,387 chainCb3,387 chainPriPac1,387 chainSelf,376 maximum blastHg18KG,93 est,629 intronEst,704 phastConsElements5way,179 maxtracks augustusGene,139 may chainCaePb1,135 chainCaeRem2,135 chainCb3,135 chainPriPac1,135 chainSelf,145 cons5way,486 est,143 est,261 est,369 est,479 est,481 est,493 est,495 est,515 est,640 gc5Base,40 intronEst,218 intronEst,336 intronEst,444 intronEst,554 intronEst,556 intronEst,568 intronEst,570 intronEst,590 intronEst,715 mrna,89 mrna,207 mrna,315 multiz5way,487 netCaePb1,116 netCaeRem2,116 netCb3,116 netPriPac1,116 rmsk,234 rmsk,256 rmsk,266 simpleRepeat,43 tRNAs,210 tRNAs,212 tRNAs,325 mb nucleosomeAdjustedCoverage,109 mcgarvey xenoRefGene,338 mckernan nucleosome,306 nucleosomeAdjustedCoverage,176 nucleosomeControlCoverage,195 nucleosomeDensity,145 nucleosomeStringency,118 mdash est,453 est,457 intronEst,528 intronEst,532 mean tRNAs,117 measure cons5way,14 multiz5way,15 medicine 25mersRepeats,127 nucleosome,275 nucleosomeAdjustedCoverage,145 nucleosomeControlCoverage,164 nucleosomeDensity,114 nucleosomeStringency,87 medium refGene,94 xenoRefGene,73 mellifera augustusGene,216 menu cons5way,631 cons5way,688 multiz5way,632 multiz5way,689 refGene,148 refGene,222 transcriptome,138 xenoRefGene,174 merges gold,22 methods 25mersRepeats,34 augustusGene,46 blastHg18KG,35 chainCaePb1,288 chainCaeRem2,288 chainCb3,288 chainPriPac1,288 chainSelf,300 cons5way,815 cons5way,1224 est,415 intronEst,490 microsat,45 mrna,354 multiz5way,816 multiz5way,1225 netCaePb1,252 netCaePb1,261 netCaeRem2,252 netCaeRem2,261 netCb3,252 netCb3,261 netPriPac1,252 netPriPac1,261 nucleosomeAdjustedCoverage,11 nucleosomeStringency,13 phastConsElements5way,78 refGene,265 rmsk,210 sibTxGraph,94 simpleRepeat,55 transcriptome,161 windowmaskerSdust,46 xenoRefGene,217 metric nucleosomeAdjustedCoverage,32 nucleosomeStringency,31 micro-satellites rmsk,151 micrococcal nucleosome,23 nucleosome,79 nucleosome,139 nucleosomeControlAntisenseCoverage,4 nucleosomeControlCoverage,3 nucleosomeControlCoverage,11 nucleosomeControlCoverage,25 nucleosomeControlCoverage,77 nucleosomeControlCoverage,91 nucleosomeControlSenseCoverage,4 nucleosomeDensity,35 nucleosomeDensity,74 microsatellite microsat,1 microsat,22 microsatellites microsat,2 might est,108 est,649 intronEst,183 intronEst,724 miller blastHg18KG,159 chainCaePb1,438 chainCaePb1,486 chainCaePb1,512 chainCaePb1,532 chainCaePb1,605 chainCaeRem2,438 chainCaeRem2,486 chainCaeRem2,512 chainCaeRem2,532 chainCaeRem2,605 chainCb3,438 chainCb3,486 chainCb3,512 chainCb3,532 chainCb3,605 chainPriPac1,438 chainPriPac1,486 chainPriPac1,512 chainPriPac1,532 chainPriPac1,605 chainSelf,414 chainSelf,451 chainSelf,477 chainSelf,497 chainSelf,545 cons5way,1098 cons5way,1264 cons5way,1303 cons5way,1331 multiz5way,1099 multiz5way,1265 multiz5way,1304 multiz5way,1332 netCaePb1,440 netCaePb1,470 netCaePb1,518 netCaeRem2,440 netCaeRem2,470 netCaeRem2,518 netCb3,440 netCb3,470 netCb3,518 netPriPac1,440 netPriPac1,470 netPriPac1,518 phastConsElements5way,352 phastConsElements5way,430 phastConsElements5way,512 phastConsElements5way,540 minexonintronprob augustusGene,135 minmeanexonintronprob augustusGene,137 minmei chainCaePb1,430 chainCaeRem2,430 chainCb3,430 chainPriPac1,430 chainSelf,406 netCaePb1,432 netCaeRem2,432 netCb3,432 netPriPac1,432 phastConsElements5way,346 minus phastConsElements5way,256 mirna sangerRnaGene,41 misalignment cons5way,490 multiz5way,491 mismatch rmsk,188 missing cons5way,1048 multiz5way,1049 mj xenoRefGene,337 mk_counts windowmaskerSdust,59 mnase nucleosomeControlAntisenseCoverage,2 nucleosomeControlCoverage,1 nucleosomeControlSenseCoverage,2 mode cons5way,131 cons5way,140 cons5way,148 cons5way,608 est,63 est,128 gold,77 intronEst,141 intronEst,203 mrna,44 mrna,74 multiz5way,132 multiz5way,141 multiz5way,149 multiz5way,609 netCaePb1,71 netCaeRem2,71 netCb3,71 netPriPac1,71 phastConsElements5way,324 rmsk,113 sibTxGraph,72 model augustusGene,121 augustusGene,326 cons5way,36 cons5way,872 cons5way,966 cons5way,996 cons5way,1150 cons5way,1239 multiz5way,37 multiz5way,873 multiz5way,967 multiz5way,997 multiz5way,1151 multiz5way,1240 phastConsElements5way,45 phastConsElements5way,51 phastConsElements5way,148 phastConsElements5way,255 phastConsElements5way,263 model-based tRNAs,61 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 cons5way,1218 multiz5way,1219 phastConsElements5way,34 tRNAs,403 moderately cons5way,1022 multiz5way,1023 transcriptome,27 modes chainCaePb1,199 chainCaeRem2,199 chainCb3,199 chainPriPac1,199 chainSelf,211 cons5way,91 cons5way,650 multiz5way,92 multiz5way,651 modified rmsk,57 mol blastHg18KG,171 cons5way,1160 multiz5way,1161 tRNAs,430 molecular cons5way,1226 multiz5way,1227 molecule tRNAs,147 mononucleosomal monoNucleosomesAntiSense,6 monoNucleosomesSense,6 nucleosome,74 nucleosome,134 nucleosomeDensity,17 nucleosomeDensity,29 nucleosomeDensity,56 nucleosomeDensity,68 nucleosomeFragmentsAntisense,2 nucleosomeFragmentsSense,2 mononucleosome nucleosome,12 nucleosome,68 nucleosome,70 nucleosome,130 nucleosomeAdjustedCoverage,16 nucleosomeControl,2 nucleosomeStringency,39 monotonic phastConsElements5way,287 more 25mersRepeats,74 augustusGene,35 blastHg18KG,107 blastHg18KG,150 chainCaePb1,124 chainCaePb1,185 chainCaeRem2,124 chainCaeRem2,185 chainCb3,124 chainCb3,185 chainPriPac1,124 chainPriPac1,185 chainSelf,130 chainSelf,197 cons5way,328 cons5way,1030 est,68 est,175 est,271 est,401 intronEst,250 intronEst,346 intronEst,476 microsat,96 mrna,49 mrna,121 mrna,217 mrna,338 multiz5way,329 multiz5way,1031 nucleosome,230 refGene,235 rmsk,282 simpleRepeat,57 transcriptome,142 xenoRefGene,176 morgulis chainCaePb1,456 chainCaePb1,566 chainCaeRem2,456 chainCaeRem2,566 chainCb3,456 chainCb3,566 chainPriPac1,456 chainPriPac1,566 windowmaskerSdust,90 most augustusGene,93 augustusGene,110 est,452 intronEst,527 rmsk,215 most-conserved phastConsElements5way,122 mostly tRNAs,298 motif tRNAs,38 mouse chainCaePb1,545 chainCaeRem2,545 chainCb3,545 chainPriPac1,545 chainSelf,510 cons5way,1277 multiz5way,1278 netCaePb1,483 netCaeRem2,483 netCb3,483 netPriPac1,483 nucleosome,235 phastConsElements5way,443 mrna est,9 est,475 est,491 est,574 gold,44 intronEst,10 intronEst,550 intronEst,566 intronEst,649 mrna,9 mrna,14 mrna,129 mrna,371 mrna,411 mrna,418 sibTxGraph,11 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,233 mrna,248 mrna,289 mrna,307 mrna,332 mrna,358 much netCaePb1,375 netCaePb1,392 netCaeRem2,375 netCaeRem2,392 netCb3,375 netCb3,392 netPriPac1,375 netPriPac1,392 multi-step sibTxGraph,102 transcriptome,168 multiple chainCaePb1,156 chainCaeRem2,156 chainCb3,156 chainPriPac1,156 chainSelf,168 cons5way,588 est,658 intronEst,733 mrna,374 multiz5way,589 phastConsElements5way,95 phastConsElements5way,118 phastConsElements5way,488 refGene,293 xenoRefGene,245 multiplied phastConsElements5way,163 multiply cons5way,836 multiz5way,837 multistep tRNAs,492 multiz cons5way,2 cons5way,42 cons5way,839 cons5wayViewalign,1 cons5wayViewalign,3 cons5wayViewelements,3 cons5wayViewphastcons,4 multiz5way,1 multiz5way,3 multiz5way,43 multiz5way,840 phastConsElements5way,105 phastConsElements5way,344 phastConsElements5way,464 must intronEst,63 mutation chainCaePb1,145 chainCaeRem2,145 chainCb3,145 chainPriPac1,145 chainSelf,155 myers blastHg18KG,161 n nucleosomeAdjustedCoverage,40 nucleosomeAdjustedCoverage,41 nucleosomeAdjustedCoverage,46 nucleosomeAdjustedCoverage,67 naked nucleosomeControlCoverage,31 nucleosomeControlCoverage,97 name chainCaePb1,275 chainCaeRem2,275 chainCb3,275 chainPriPac1,275 chainSelf,287 est,201 intronEst,276 mrna,147 phastConsElements5way,305 refGene,157 refGene,167 refGene,172 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names chainCaePb1,203 chainCaeRem2,203 chainCb3,203 chainPriPac1,203 chainSelf,215 refGene,179 xenoRefGene,131 native augustusGene,295 natl chainCaePb1,550 chainCaeRem2,550 chainCb3,550 chainPriPac1,550 chainSelf,515 cons5way,1282 multiz5way,1283 netCaePb1,488 netCaeRem2,488 netCb3,488 netPriPac1,488 phastConsElements5way,448 natural netCaePb1,313 netCaeRem2,313 netCb3,313 netPriPac1,313 naview tRNAs,348 nbsp chainCaePb1,398 chainCaeRem2,398 chainCb3,398 chainPriPac1,398 ncbi blastHg18KG,145 refGene,25 refGene,347 refGene,375 sibTxGraph,237 transcriptome,321 windowmaskerSdust,29 windowmaskerSdust,43 xenoRefGene,29 xenoRefGene,299 xenoRefGene,368 ncrna sangerRnaGene,44 necessary netCaePb1,297 netCaeRem2,297 netCb3,297 netPriPac1,297 nematode phastCons5way,2 phastCons5way,5 phastConsElements5way,2 phastConsElements5way,5 nematodes augustusGene,211 cons5way,6 cons5wayViewalign,7 cons5wayViewelements,7 cons5wayViewphastcons,8 multiz5way,7 nested cons5way,469 multiz5way,470 net cons5way,1257 multiz5way,1258 netCaePb1,3 netCaePb1,12 netCaeRem2,3 netCaeRem2,12 netCb3,3 netCb3,12 netPriPac1,3 netPriPac1,12 phastConsElements5way,423 netclass cons5way,1110 multiz5way,1111 netCaePb1,367 netCaePb1,410 netCaeRem2,367 netCaeRem2,410 netCb3,367 netCb3,410 netPriPac1,367 netPriPac1,410 phastConsElements5way,364 nets netCaePb1,454 netCaeRem2,454 netCb3,454 netPriPac1,454 netsyntenic cons5way,1108 multiz5way,1109 netCaePb1,335 netCaePb1,408 netCaeRem2,335 netCaeRem2,408 netCb3,335 netCb3,408 netPriPac1,335 netPriPac1,408 phastConsElements5way,362 netting cons5way,830 multiz5way,831 phastConsElements5way,93 new augustusGene,329 cons5way,1228 multiz5way,1229 tRNAs,482 newer est,526 intronEst,601 rmsk,236 next blastHg18KG,60 chainCaePb1,254 chainCaePb1,283 chainCaeRem2,254 chainCaeRem2,283 chainCb3,254 chainCb3,283 chainPriPac1,254 chainPriPac1,283 chainSelf,266 chainSelf,295 cons5way,898 multiz5way,899 phastConsElements5way,77 nielsen cons5way,1220 multiz5way,1221 nig augustusGene,270 no blastHg18KG,97 cons5way,288 cons5way,651 cons5way,709 est,95 gap,10 gold,112 intronEst,170 microsat,73 multiz5way,289 multiz5way,652 multiz5way,710 sibTxGraph,56 tRNAs,191 non-c cons5way,561 multiz5way,562 xenoRefGene,3 non-coding augustusGene,75 refGene,241 transcriptome,56 xenoRefGene,193 non-conserved cons5way,924 multiz5way,925 phastConsElements5way,139 phastConsElements5way,262 non-intronic sibTxGraph,130 transcriptome,196 non-mrna est,595 intronEst,670 non-protein-coding refGene,20 refGene,249 xenoRefGene,18 xenoRefGene,201 non-redundant refGene,381 xenoRefGene,374 noncoding transcriptome,84 nonsyn netCaePb1,238 netCaeRem2,238 netCb3,238 netPriPac1,238 nor tRNAs,265 not cons5way,216 cons5way,580 cons5way,658 cons5way,1007 est,341 est,455 est,482 est,496 intronEst,416 intronEst,530 intronEst,557 intronEst,571 mrna,287 multiz5way,217 multiz5way,581 multiz5way,659 multiz5way,1008 netCaePb1,302 netCaeRem2,302 netCb3,302 netPriPac1,302 rmsk,272 tRNAs,136 tRNAs,153 tRNAs,213 tRNAs,263 tRNAs,306 note cons5way,999 est,626 intronEst,701 multiz5way,1000 rmsk,230 tRNAs,283 novo augustusGene,304 ns cons5way,362 multiz5way,363 netCaePb1,382 netCaeRem2,382 netCb3,382 netPriPac1,382 nsome monoNucleosomesAntiSense,1 monoNucleosomesSense,1 nucleosomeAdjustedCoverage,2 nucleosomeDensity,1 nucleosomeStringency,1 nuclear rmsk,126 rmsk,134 nuclease nucleosome,80 nucleosome,140 nucleosomeControlAntisenseCoverage,5 nucleosomeControlCoverage,4 nucleosomeControlCoverage,12 nucleosomeControlCoverage,26 nucleosomeControlCoverage,78 nucleosomeControlCoverage,92 nucleosomeControlSenseCoverage,5 nucleosomeDensity,36 nucleosomeDensity,75 nuclease-digested nucleosome,24 nucleic est,727 intronEst,805 microsat,125 mrna,444 refGene,389 simpleRepeat,85 tRNAs,381 tRNAs,404 tRNAs,457 tRNAs,500 transcriptome,358 xenoRefGene,349 xenoRefGene,382 nucleosome nucleosome,1 nucleosome,2 nucleosome,312 nucleosomeAdjustedCoverage,5 nucleosomeAdjustedCoverage,63 nucleosomeAdjustedCoverage,75 nucleosomeAdjustedCoverage,182 nucleosomeControlCoverage,40 nucleosomeControlCoverage,106 nucleosomeControlCoverage,201 nucleosomeDensity,5 nucleosomeDensity,151 nucleosomeStringency,3 nucleosomeStringency,19 nucleosomeStringency,58 nucleosomeStringency,124 nucleosome-bound nucleosome,91 nucleosome,128 nucleosome,151 nucleosomeadjustedcoverage.wigascii.gz nucleosomeAdjustedCoverage,107 nucleosomes nucleosomeStringency,29 nucleotide cons5way,969 multiz5way,970 number 25mersRepeats,60 augustusGene,153 intronEst,147 nucleosome,221 nucleosome,245 nucleosomeAdjustedCoverage,73 nucleosomeStringency,55 rmsk,203 numbers cons5way,536 multiz5way,537 nucleosomeAdjustedCoverage,51 o xenoRefGene,331 obtain cons5way,1027 multiz5way,1028 tRNAs,45 tRNAs,67 obtained augustusGene,126 nucleosome,77 nucleosome,137 nucleosomeAdjustedCoverage,79 phastConsElements5way,112 occur simpleRepeat,36 occurrence cons5way,517 multiz5way,518 occurrences 25mersRepeats,62 occurs 25mersRepeats,73 oct augustusGene,334 blastHg18KG,174 odds phastConsElements5way,299 of 25mersRepeats,17 25mersRepeats,38 25mersRepeats,54 25mersRepeats,61 25mersRepeats,63 25mersRepeats,65 25mersRepeats,95 25mersRepeats,126 augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 blastHg18KG,19 blastHg18KG,110 blastHg18KG,122 blastHg18KG,130 blastHg18KG,143 chainCaePb1,20 chainCaePb1,143 chainCaePb1,163 chainCaePb1,212 chainCaePb1,266 chainCaePb1,276 chainCaePb1,367 chainCaePb1,372 chainCaePb1,390 chainCaePb1,409 chainCaePb1,474 chainCaePb1,496 chainCaeRem2,20 chainCaeRem2,143 chainCaeRem2,163 chainCaeRem2,212 chainCaeRem2,266 chainCaeRem2,276 chainCaeRem2,367 chainCaeRem2,372 chainCaeRem2,390 chainCaeRem2,409 chainCaeRem2,474 chainCaeRem2,496 chainCb3,20 chainCb3,143 chainCb3,163 chainCb3,212 chainCb3,266 chainCb3,276 chainCb3,367 chainCb3,372 chainCb3,390 chainCb3,409 chainCb3,474 chainCb3,496 chainPriPac1,20 chainPriPac1,143 chainPriPac1,163 chainPriPac1,212 chainPriPac1,266 chainPriPac1,276 chainPriPac1,367 chainPriPac1,372 chainPriPac1,390 chainPriPac1,409 chainPriPac1,474 chainPriPac1,496 chainSelf,16 chainSelf,47 chainSelf,62 chainSelf,80 chainSelf,153 chainSelf,162 chainSelf,175 chainSelf,224 chainSelf,278 chainSelf,288 chainSelf,356 chainSelf,361 chainSelf,379 chainSelf,439 chainSelf,461 cons5way,15 cons5way,44 cons5way,108 cons5way,113 cons5way,161 cons5way,177 cons5way,183 cons5way,196 cons5way,263 cons5way,375 cons5way,381 cons5way,386 cons5way,401 cons5way,429 cons5way,434 cons5way,459 cons5way,474 cons5way,494 cons5way,532 cons5way,546 cons5way,574 cons5way,589 cons5way,641 cons5way,647 cons5way,843 cons5way,870 cons5way,878 cons5way,947 cons5way,958 cons5way,967 cons5way,1013 cons5way,1055 cons5way,1064 cons5way,1074 cons5way,1078 cons5way,1099 cons5way,1158 cons5way,1243 cons5way,1357 est,43 est,73 est,82 est,100 est,102 est,137 est,176 est,202 est,213 est,249 est,307 est,473 est,489 est,507 est,524 est,586 est,594 est,598 est,678 gap,35 gc5Base,19 gc5Base,46 gc5Base,52 gc5Base,67 gc5Base,76 gold,15 gold,69 gold,104 gold,134 intronEst,33 intronEst,54 intronEst,66 intronEst,92 intronEst,104 intronEst,113 intronEst,148 intronEst,157 intronEst,175 intronEst,177 intronEst,212 intronEst,251 intronEst,277 intronEst,288 intronEst,324 intronEst,382 intronEst,548 intronEst,564 intronEst,582 intronEst,599 intronEst,661 intronEst,669 intronEst,673 intronEst,753 microsat,27 microsat,55 microsat,64 microsat,81 monoNucleosomesAntiSense,5 monoNucleosomesSense,5 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,253 mrna,394 multiz5way,5 multiz5way,16 multiz5way,45 multiz5way,109 multiz5way,114 multiz5way,162 multiz5way,178 multiz5way,184 multiz5way,197 multiz5way,264 multiz5way,376 multiz5way,382 multiz5way,387 multiz5way,402 multiz5way,430 multiz5way,435 multiz5way,460 multiz5way,475 multiz5way,495 multiz5way,533 multiz5way,547 multiz5way,575 multiz5way,590 multiz5way,642 multiz5way,648 multiz5way,844 multiz5way,871 multiz5way,879 multiz5way,948 multiz5way,959 multiz5way,968 multiz5way,1014 multiz5way,1056 multiz5way,1065 multiz5way,1075 multiz5way,1079 multiz5way,1100 multiz5way,1159 multiz5way,1244 multiz5way,1358 netCaePb1,29 netCaePb1,172 netCaePb1,192 netCaePb1,376 netCaePb1,417 netCaePb1,452 netCaeRem2,29 netCaeRem2,172 netCaeRem2,192 netCaeRem2,376 netCaeRem2,417 netCaeRem2,452 netCb3,29 netCb3,172 netCb3,192 netCb3,376 netCb3,417 netCb3,452 netPriPac1,29 netPriPac1,172 netPriPac1,192 netPriPac1,376 netPriPac1,417 netPriPac1,452 nucleosome,34 nucleosome,44 nucleosome,57 nucleosome,82 nucleosome,90 nucleosome,109 nucleosome,116 nucleosome,126 nucleosome,142 nucleosome,150 nucleosome,172 nucleosome,182 nucleosome,191 nucleosome,222 nucleosome,246 nucleosome,274 nucleosome,315 nucleosome,321 nucleosomeAdjustedCoverage,27 nucleosomeAdjustedCoverage,52 nucleosomeAdjustedCoverage,74 nucleosomeAdjustedCoverage,144 nucleosomeAdjustedCoverage,185 nucleosomeAdjustedCoverage,191 nucleosomeControlCoverage,30 nucleosomeControlCoverage,50 nucleosomeControlCoverage,71 nucleosomeControlCoverage,96 nucleosomeControlCoverage,116 nucleosomeControlCoverage,137 nucleosomeControlCoverage,163 nucleosomeControlCoverage,204 nucleosomeControlCoverage,210 nucleosomeDensity,4 nucleosomeDensity,16 nucleosomeDensity,38 nucleosomeDensity,50 nucleosomeDensity,55 nucleosomeDensity,77 nucleosomeDensity,89 nucleosomeDensity,113 nucleosomeDensity,154 nucleosomeDensity,160 nucleosomeStringency,18 nucleosomeStringency,27 nucleosomeStringency,37 nucleosomeStringency,49 nucleosomeStringency,56 nucleosomeStringency,86 nucleosomeStringency,127 nucleosomeStringency,133 phastConsElements5way,15 phastConsElements5way,26 phastConsElements5way,49 phastConsElements5way,57 phastConsElements5way,107 phastConsElements5way,154 phastConsElements5way,195 phastConsElements5way,204 phastConsElements5way,223 phastConsElements5way,237 phastConsElements5way,289 phastConsElements5way,353 refGene,84 refGene,103 refGene,117 refGene,133 refGene,169 refGene,281 refGene,313 refGene,384 rmsk,39 rmsk,59 rmsk,84 rmsk,122 rmsk,176 rmsk,186 rmsk,204 rmsk,218 rmsk,321 sangerGene,37 sangerGene,51 sangerPseudoGene,36 sangerRnaGene,36 sibTxGraph,9 sibTxGraph,146 sibTxGraph,186 sibTxGraph,229 simpleRepeat,40 tRNAs,49 tRNAs,72 tRNAs,82 tRNAs,90 tRNAs,164 tRNAs,232 tRNAs,245 tRNAs,273 tRNAs,320 tRNAs,358 tRNAs,373 tRNAs,450 tRNAs,481 tRNAs,496 transcriptome,30 transcriptome,35 transcriptome,212 transcriptome,313 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,233 xenoRefGene,265 xenoRefGene,377 off chainCaePb1,245 chainCaePb1,251 chainCaeRem2,245 chainCaeRem2,251 chainCb3,245 chainCb3,251 chainPriPac1,245 chainPriPac1,251 chainSelf,257 chainSelf,263 refGene,182 xenoRefGene,134 often chainCaePb1,174 chainCaePb1,186 chainCaeRem2,174 chainCaeRem2,186 chainCb3,174 chainCb3,186 chainPriPac1,174 chainPriPac1,186 chainSelf,186 chainSelf,198 oligo nucleosome,337 nucleosomeAdjustedCoverage,207 nucleosomeControlCoverage,226 nucleosomeDensity,176 nucleosomeStringency,149 oligo-dt est,466 intronEst,541 on augustusGene,29 augustusGene,37 augustusGene,151 blastHg18KG,152 chainCaePb1,233 chainCaePb1,259 chainCaeRem2,233 chainCaeRem2,259 chainCb3,233 chainCb3,259 chainPriPac1,233 chainPriPac1,259 chainSelf,245 chainSelf,271 cons5way,31 cons5way,247 cons5way,422 cons5way,431 cons5way,539 cons5way,742 cons5way,782 cons5way,865 cons5way,1009 cons5way,1136 est,232 est,270 gap,27 gold,126 intronEst,307 intronEst,345 mrna,178 mrna,216 multiz5way,32 multiz5way,248 multiz5way,423 multiz5way,432 multiz5way,540 multiz5way,743 multiz5way,783 multiz5way,866 multiz5way,1010 multiz5way,1137 netCaePb1,140 netCaePb1,154 netCaePb1,204 netCaePb1,209 netCaePb1,224 netCaePb1,263 netCaeRem2,140 netCaeRem2,154 netCaeRem2,204 netCaeRem2,209 netCaeRem2,224 netCaeRem2,263 netCb3,140 netCb3,154 netCb3,204 netCb3,209 netCb3,224 netCb3,263 netPriPac1,140 netPriPac1,154 netPriPac1,204 netPriPac1,209 netPriPac1,224 netPriPac1,263 nucleosomeAdjustedCoverage,24 nucleosomeDensity,46 nucleosomeDensity,85 phastConsElements5way,40 phastConsElements5way,116 phastConsElements5way,192 phastConsElements5way,311 refGene,143 rmsk,74 rmsk,243 sibTxGraph,83 sibTxGraph,89 sibTxGraph,200 sibTxGraph,234 tRNAs,269 transcriptome,17 transcriptome,149 transcriptome,156 transcriptome,284 transcriptome,318 xenoRefGene,345 once 25mersRepeats,76 one augustusGene,169 chainCaePb1,151 chainCaePb1,267 chainCaeRem2,151 chainCaeRem2,267 chainCb3,151 chainCb3,267 chainPriPac1,151 chainPriPac1,267 chainSelf,67 chainSelf,161 chainSelf,279 cons5way,326 cons5way,462 cons5way,646 cons5way,894 est,173 est,273 est,306 intronEst,69 intronEst,73 intronEst,248 intronEst,348 intronEst,381 mrna,119 mrna,219 mrna,252 multiz5way,327 multiz5way,463 multiz5way,647 multiz5way,895 netCaePb1,191 netCaePb1,290 netCaePb1,386 netCaeRem2,191 netCaeRem2,290 netCaeRem2,386 netCb3,191 netCb3,290 netCb3,386 netPriPac1,191 netPriPac1,290 netPriPac1,386 nucleosome,42 phastConsElements5way,73 sangerGene,50 transcriptome,37 transcriptome,43 transcriptome,47 only chainCaePb1,263 chainCaeRem2,263 chainCb3,263 chainPriPac1,263 chainSelf,275 cons5way,715 est,157 est,286 est,359 est,392 est,669 intronEst,232 intronEst,361 intronEst,434 intronEst,467 intronEst,744 microsat,61 mrna,103 mrna,232 mrna,305 mrna,385 multiz5way,716 refGene,258 refGene,304 sibTxGraph,118 transcriptome,184 xenoRefGene,210 xenoRefGene,256 open transcriptome,99 opposite netCaePb1,236 netCaeRem2,236 netCb3,236 netPriPac1,236 option augustusGene,167 augustusGene,187 cons5way,260 est,405 intronEst,480 mrna,342 multiz5way,261 phastConsElements5way,123 refGene,162 refGene,214 transcriptome,130 xenoRefGene,114 xenoRefGene,166 optional refGene,192 transcriptome,108 xenoRefGene,144 options cons5way,199 gc5Base,70 multiz5way,200 or blastHg18KG,198 chainCaePb1,89 chainCaePb1,113 chainCaePb1,146 chainCaeRem2,89 chainCaeRem2,113 chainCaeRem2,146 chainCb3,89 chainCb3,113 chainCb3,146 chainPriPac1,89 chainPriPac1,113 chainPriPac1,146 chainSelf,97 chainSelf,120 chainSelf,156 cons5way,132 cons5way,242 cons5way,309 cons5way,327 cons5way,343 cons5way,399 cons5way,514 est,174 est,298 est,317 est,326 est,391 est,448 est,480 est,494 intronEst,249 intronEst,373 intronEst,392 intronEst,401 intronEst,466 intronEst,523 intronEst,555 intronEst,569 mrna,120 mrna,244 mrna,263 mrna,272 multiz5way,133 multiz5way,243 multiz5way,310 multiz5way,328 multiz5way,344 multiz5way,400 multiz5way,515 netCaePb1,175 netCaePb1,358 netCaePb1,387 netCaeRem2,175 netCaeRem2,358 netCaeRem2,387 netCb3,175 netCb3,358 netCb3,387 netPriPac1,175 netPriPac1,358 netPriPac1,387 phastConsElements5way,315 phastConsElements5way,329 refGene,57 refGene,139 refGene,180 sangerGene,44 sangerGene,69 sangerRnaGene,64 sibTxGraph,157 tRNAs,183 tRNAs,211 tRNAs,235 tRNAs,300 transcriptome,46 transcriptome,223 xenoRefGene,132 order tRNAs,250 ordered gold,38 ordering cons5way,842 multiz5way,843 organ est,198 est,204 intronEst,273 intronEst,279 mrna,144 mrna,150 organism chainCaePb1,242 chainCaePb1,272 chainCaeRem2,242 chainCaeRem2,272 chainCb3,242 chainCb3,272 chainPriPac1,242 chainPriPac1,272 chainSelf,254 chainSelf,284 organism-specific blastHg18KG,92 organisms netCaePb1,403 netCaeRem2,403 netCb3,403 netPriPac1,403 rmsk,261 xenoRefGene,21 organizes chainCaePb1,344 chainCaeRem2,344 chainCb3,344 chainPriPac1,344 chainSelf,335 orientation cytoBandIdeo,6 netCaePb1,237 netCaeRem2,237 netCb3,237 netPriPac1,237 oriented gold,40 orthologous netCaePb1,39 netCaeRem2,39 netCb3,39 netPriPac1,39 ostell est,721 intronEst,799 mrna,438 transcriptome,352 other augustusGene,208 cons5way,515 cons5way,1360 multiz5way,516 multiz5way,1361 netCaePb1,102 netCaePb1,195 netCaeRem2,102 netCaeRem2,195 netCb3,102 netCb3,195 netPriPac1,102 netPriPac1,195 rmsk,165 tRNAs,243 xenoRefGene,1 xenoRefGene,22 otherwise cons5way,596 cons5way,708 cons5way,734 est,650 intronEst,725 multiz5way,597 multiz5way,709 multiz5way,735 ottonello tRNAs,478 ouml augustusGene,269 our augustusGene,43 nucleosomeAdjustedCoverage,104 sibTxGraph,242 transcriptome,326 out chainCaePb1,366 chainCaeRem2,366 chainCb3,366 chainPriPac1,366 chainSelf,52 chainSelf,78 chainSelf,313 chainSelf,355 sibTxGraph,137 transcriptome,203 output windowmaskerSdust,63 windowmaskerSdust,72 outputs rmsk,35 outside est,585 intronEst,660 over 25mersRepeats,43 25mersRepeats,80 blastHg18KG,106 blastHg18KG,120 chainCaePb1,159 chainCaePb1,381 chainCaeRem2,159 chainCaeRem2,381 chainCb3,159 chainCb3,381 chainPriPac1,159 chainPriPac1,381 chainSelf,171 chainSelf,370 cons5way,752 multiz5way,753 nucleosome,236 overall cons5way,162 multiz5way,163 overlap sibTxGraph,58 overlapping 25mersRepeats,100 chainCaePb1,74 chainCaePb1,139 chainCaeRem2,74 chainCaeRem2,139 chainCb3,74 chainCb3,139 chainPriPac1,74 chainPriPac1,139 chainSelf,149 gold,25 sibTxGraph,147 transcriptome,213 p chainPriPac1,1 chainPriPac1,4 chainPriPac1,21 chainPriPac1,56 chainPriPac1,110 chainPriPac1,296 chainPriPac1,350 cons5way,28 cons5way,77 multiz5way,29 multiz5way,78 netPriPac1,1 netPriPac1,4 netPriPac1,21 netPriPac1,47 pac chainCaePb1,519 chainCaeRem2,519 chainCb3,519 chainPriPac1,519 chainSelf,484 cons5way,1310 multiz5way,1311 phastConsElements5way,519 pacificus chainPriPac1,2 chainPriPac1,5 chainPriPac1,22 chainPriPac1,57 chainPriPac1,111 chainPriPac1,297 chainPriPac1,351 cons5way,29 cons5way,78 cons5way,814 multiz5way,30 multiz5way,79 multiz5way,815 netPriPac1,2 netPriPac1,5 netPriPac1,22 netPriPac1,48 pack chainCaePb1,195 chainCaeRem2,195 chainCb3,195 chainPriPac1,195 chainSelf,207 cons5way,89 cons5way,130 multiz5way,90 multiz5way,131 phastConsElements5way,328 package phastConsElements5way,35 page cons5way,643 est,113 est,414 intronEst,188 intronEst,489 mrna,59 mrna,353 multiz5way,644 phastConsElements5way,314 refGene,49 refGene,121 refGene,123 refGene,233 rmsk,77 xenoRefGene,100 xenoRefGene,191 pages netCaePb1,268 netCaeRem2,268 netCb3,268 netPriPac1,268 pair nucleosome,99 nucleosome,159 nucleosome,200 nucleosome,253 nucleosomeAdjustedCoverage,56 nucleosomeAdjustedCoverage,61 nucleosomeControlCoverage,44 nucleosomeControlCoverage,110 nucleosomeStringency,47 nucleosomeStringency,64 paired gold,46 paired-end nucleosome,25 nucleosome,46 pairs gold,57 nucleosome,37 nucleosome,56 nucleosome,64 nucleosome,121 nucleosome,177 nucleosomeAdjustedCoverage,86 nucleosomeDensity,33 nucleosomeDensity,72 pairwise chainCaePb1,515 chainCaeRem2,515 chainCb3,515 chainPriPac1,515 chainSelf,480 cons5way,111 cons5way,211 cons5way,270 cons5way,817 cons5way,832 cons5way,1306 multiz5way,112 multiz5way,212 multiz5way,271 multiz5way,818 multiz5way,833 multiz5way,1307 phastConsElements5way,80 phastConsElements5way,102 phastConsElements5way,515 pale cons5way,356 multiz5way,357 paralogous cons5way,506 multiz5way,507 paralogs chainCaePb1,189 chainCaeRem2,189 chainCb3,189 chainPriPac1,189 chainSelf,201 parameters windowmaskerSdust,57 part blastHg18KG,142 netCaePb1,28 netCaeRem2,28 netCb3,28 netPriPac1,28 nucleosome,125 nucleosome,181 phastConsElements5way,25 particular augustusGene,234 chainCaePb1,161 chainCaeRem2,161 chainCb3,161 chainPriPac1,161 chainSelf,173 passed 25mersRepeats,42 path gold,82 gold,90 patterns augustusGene,56 pavesi tRNAs,41 tRNAs,470 peckham nucleosome,298 nucleosomeAdjustedCoverage,168 nucleosomeControlCoverage,187 nucleosomeDensity,137 nucleosomeStringency,110 pedersen cons5way,1172 multiz5way,1173 phastConsElements5way,383 penalty blastHg18KG,99 penn cons5way,1101 multiz5way,1102 phastConsElements5way,355 pennsylvania chainCaePb1,426 chainCaeRem2,426 chainCb3,426 chainPriPac1,426 chainSelf,402 netCaePb1,428 netCaeRem2,428 netCb3,428 netPriPac1,428 people sibTxGraph,246 transcriptome,330 peptides blastHg18KG,21 per tRNAs,94 percent gc5Base,2 gc5Base,4 gc5Base,14 percentage gc5Base,18 perfect microsat,31 performed cons5way,714 multiz5way,715 perhaps est,576 intronEst,651 period microsat,65 permitted rmsk,273 persists cons5way,420 multiz5way,421 phast phastConsElements5way,28 phastcons cons5way,37 cons5way,167 cons5way,857 cons5way,859 cons5way,909 cons5way,1005 cons5way,1033 cons5way,1042 cons5way,1116 cons5wayViewphastcons,3 multiz5way,38 multiz5way,168 multiz5way,858 multiz5way,860 multiz5way,910 multiz5way,1006 multiz5way,1034 multiz5way,1043 multiz5way,1117 phastCons5way,8 phastConsElements5way,21 phastConsElements5way,23 phastConsElements5way,115 phastConsElements5way,124 phastConsElements5way,370 phastConsElements5way,378 phylo-hmm cons5way,867 cons5way,913 cons5way,949 cons5way,1142 multiz5way,868 multiz5way,914 multiz5way,950 multiz5way,1143 phastConsElements5way,46 phastConsElements5way,128 phastConsElements5way,239 phylogenetic cons5way,33 cons5way,1132 cons5way,1215 cons5way,1348 cons5way,1355 multiz5way,34 multiz5way,1133 multiz5way,1216 multiz5way,1349 multiz5way,1356 phastConsElements5way,29 phastConsElements5way,42 phastConsElements5way,147 phylogeny cons5way,954 multiz5way,955 pipeline sibTxGraph,103 sibTxGraph,209 transcriptome,169 transcriptome,293 place netCaePb1,287 netCaeRem2,287 netCb3,287 netPriPac1,287 placed netCaePb1,329 netCaeRem2,329 netCb3,329 netPriPac1,329 places est,659 intronEst,734 mrna,375 refGene,294 xenoRefGene,246 plasmid est,437 gold,47 intronEst,512 platform sibTxGraph,205 transcriptome,289 please refGene,39 tRNAs,278 tRNAs,282 tRNAs,361 plot cons5way,128 multiz5way,129 nucleosomeAdjustedCoverage,13 nucleosomeControlCoverage,19 nucleosomeControlCoverage,63 nucleosomeControlCoverage,85 nucleosomeControlCoverage,129 nucleosomeDensity,23 nucleosomeDensity,62 nucleosomeStringency,15 plotted cons5way,928 multiz5way,929 plotting cons5way,1124 multiz5way,1125 pmc chainCaePb1,564 chainCaePb1,620 chainCaeRem2,564 chainCaeRem2,620 chainCb3,564 chainCb3,620 chainPriPac1,564 chainPriPac1,620 chainSelf,529 chainSelf,560 cons5way,1209 cons5way,1254 cons5way,1296 cons5way,1346 est,739 est,757 intronEst,817 intronEst,835 microsat,136 mrna,456 mrna,474 multiz5way,1210 multiz5way,1255 multiz5way,1297 multiz5way,1347 netCaePb1,502 netCaePb1,533 netCaeRem2,502 netCaeRem2,533 netCb3,502 netCb3,533 netPriPac1,502 netPriPac1,533 nucleosome,334 nucleosomeAdjustedCoverage,204 nucleosomeControlCoverage,223 nucleosomeDensity,173 nucleosomeStringency,146 phastConsElements5way,420 phastConsElements5way,462 phastConsElements5way,505 phastConsElements5way,555 refGene,367 refGene,401 simpleRepeat,96 tRNAs,392 tRNAs,415 tRNAs,468 tRNAs,511 transcriptome,370 xenoRefGene,318 xenoRefGene,360 xenoRefGene,394 pmc1182216 cons5way,1210 multiz5way,1211 phastConsElements5way,421 pmc1206396 cons5way,1255 multiz5way,1256 pmc146525 tRNAs,469 pmc148217 microsat,137 simpleRepeat,97 pmc187518 est,758 intronEst,836 mrna,475 refGene,368 xenoRefGene,319 pmc208784 chainCaePb1,565 chainCaeRem2,565 chainCb3,565 chainPriPac1,565 chainSelf,530 cons5way,1297 multiz5way,1298 netCaePb1,503 netCaeRem2,503 netCb3,503 netPriPac1,503 phastConsElements5way,463 pmc2493394 nucleosome,335 nucleosomeAdjustedCoverage,205 nucleosomeControlCoverage,224 nucleosomeDensity,174 nucleosomeStringency,147 pmc2686519 tRNAs,393 pmc308124 tRNAs,416 pmc308779 est,740 intronEst,818 mrna,457 transcriptome,371 pmc383317 phastConsElements5way,506 pmc3965018 xenoRefGene,361 pmc430961 chainCaePb1,621 chainCaeRem2,621 chainCb3,621 chainPriPac1,621 chainSelf,561 cons5way,1347 multiz5way,1348 netCaePb1,534 netCaeRem2,534 netCb3,534 netPriPac1,534 phastConsElements5way,556 pmc523650 tRNAs,512 pmc539979 refGene,402 xenoRefGene,395 pmid augustusGene,314 augustusGene,339 chainCaePb1,524 chainCaePb1,562 chainCaePb1,589 chainCaePb1,618 chainCaeRem2,524 chainCaeRem2,562 chainCaeRem2,589 chainCaeRem2,618 chainCb3,524 chainCb3,562 chainCb3,589 chainCb3,618 chainPriPac1,524 chainPriPac1,562 chainPriPac1,589 chainPriPac1,618 chainSelf,489 chainSelf,527 chainSelf,558 cons5way,1207 cons5way,1252 cons5way,1294 cons5way,1315 cons5way,1344 cons5way,1367 est,737 est,755 intronEst,815 intronEst,833 microsat,134 mrna,454 mrna,472 multiz5way,1208 multiz5way,1253 multiz5way,1295 multiz5way,1316 multiz5way,1345 multiz5way,1368 netCaePb1,500 netCaePb1,531 netCaeRem2,500 netCaeRem2,531 netCb3,500 netCb3,531 netPriPac1,500 netPriPac1,531 nucleosome,332 nucleosomeAdjustedCoverage,202 nucleosomeControlCoverage,221 nucleosomeDensity,171 nucleosomeStringency,144 phastConsElements5way,418 phastConsElements5way,460 phastConsElements5way,503 phastConsElements5way,524 phastConsElements5way,553 refGene,365 refGene,399 simpleRepeat,94 tRNAs,390 tRNAs,413 tRNAs,438 tRNAs,466 tRNAs,509 transcriptome,368 windowmaskerSdust,113 xenoRefGene,316 xenoRefGene,358 xenoRefGene,392 point chainSelf,77 est,519 intronEst,594 poly-a augustusGene,62 est,471 est,545 intronEst,546 intronEst,620 polymorphic microsat,41 simpleRepeat,46 population microsat,44 portion nucleosome,50 nucleosome,115 nucleosome,171 portions cons5way,385 multiz5way,386 position cons5way,234 multiz5way,235 nucleosome,313 nucleosomeAdjustedCoverage,20 nucleosomeAdjustedCoverage,183 nucleosomeControlCoverage,202 nucleosomeDensity,152 nucleosomeStringency,125 positioned nucleosomeStringency,28 positioning nucleosome,324 nucleosomeAdjustedCoverage,194 nucleosomeControlCoverage,213 nucleosomeDensity,163 nucleosomeStringency,4 nucleosomeStringency,20 nucleosomeStringency,136 positions cons5way,556 multiz5way,557 positive tRNAs,88 possible cons5way,1072 gold,42 multiz5way,1073 netCaePb1,96 netCaeRem2,96 netCb3,96 netPriPac1,96 possibly cons5way,294 cons5way,335 multiz5way,295 multiz5way,336 simpleRepeat,18 posterior cons5way,934 multiz5way,935 potential tRNAs,422 pp cons5way,1232 multiz5way,1233 tRNAs,367 pre-filters tRNAs,43 predicted blastHg18KG,24 blastHg18KG,38 phastConsElements5way,218 refGene,91 sibTxGraph,32 tRNAs,19 tRNAs,322 transcriptome,61 transcriptome,151 xenoRefGene,70 prediction augustusGene,321 refGene,76 transcriptome,78 xenoRefGene,55 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 blastHg18KG,12 nucleosome,3 nucleosomeDensity,6 phastConsElements5way,14 phastConsElements5way,37 phastConsElements5way,106 refGene,8 refGene,205 refGene,228 sangerGene,9 sangerGene,18 sangerGene,81 sangerPseudoGene,9 sangerPseudoGene,17 sangerPseudoGene,51 sangerRnaGene,9 sangerRnaGene,17 sangerRnaGene,76 tRNAs,12 tRNAs,78 tRNAs,295 transcriptome,8 transcriptome,15 transcriptome,31 transcriptome,121 transcriptome,275 xenoRefGene,10 xenoRefGene,157 xenoRefGene,186 prepared gc5Base,80 present cons5way,697 multiz5way,698 rmsk,44 presentation gc5Base,75 primary tRNAs,73 tRNAs,234 primed est,463 intronEst,538 primer est,450 intronEst,525 priming est,546 intronEst,621 pripac1 chainPriPac1,10 chainPriPac1,23 chainPriPac1,28 cons5way,81 multiz5way,82 netPriPac1,10 netPriPac1,61 netPriPac1,62 probabilistic cons5way,871 multiz5way,872 phastConsElements5way,50 probability cons5way,935 multiz5way,936 phastConsElements5way,251 phastConsElements5way,259 probably tRNAs,151 tRNAs,189 proc chainCaePb1,549 chainCaeRem2,549 chainCb3,549 chainPriPac1,549 chainSelf,514 cons5way,1281 multiz5way,1282 netCaePb1,487 netCaeRem2,487 netCb3,487 netPriPac1,487 phastConsElements5way,447 procedure phastConsElements5way,186 process cons5way,877 cons5way,891 cons5way,971 cons5way,1238 multiz5way,878 multiz5way,892 multiz5way,972 multiz5way,1239 netCaePb1,311 netCaeRem2,311 netCb3,311 netPriPac1,311 phastConsElements5way,56 phastConsElements5way,70 processed chainCaePb1,177 chainCaeRem2,177 chainCb3,177 chainPriPac1,177 chainSelf,189 produce blastHg18KG,190 produced chainSelf,58 est,697 gap,42 gold,141 intronEst,775 mrna,414 nucleosome,19 phastConsElements5way,18 refGene,332 sangerGene,83 sangerPseudoGene,53 sangerRnaGene,78 sibTxGraph,199 transcriptome,283 xenoRefGene,284 producing cons5way,1056 multiz5way,1057 program augustusGene,21 augustusGene,257 blastHg18KG,55 blastHg18KG,80 chainCaePb1,335 chainCaePb1,377 chainCaePb1,468 chainCaeRem2,335 chainCaeRem2,377 chainCaeRem2,468 chainCb3,335 chainCb3,377 chainCb3,468 chainPriPac1,335 chainPriPac1,377 chainPriPac1,468 chainSelf,326 chainSelf,366 chainSelf,430 chainSelf,433 cons5way,860 microsat,100 microsat,120 mrna,367 multiz5way,861 netCaePb1,281 netCaePb1,334 netCaePb1,366 netCaeRem2,281 netCaeRem2,334 netCaeRem2,366 netCb3,281 netCb3,334 netCb3,366 netPriPac1,281 netPriPac1,334 netPriPac1,366 phastConsElements5way,22 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 tRNAs,28 tRNAs,53 tRNAs,63 tRNAs,446 programs cons5way,1004 cons5way,1091 multiz5way,1005 multiz5way,1092 netCaePb1,411 netCaeRem2,411 netCb3,411 netPriPac1,411 phastConsElements5way,341 project refGene,349 xenoRefGene,301 projects est,540 est,559 est,589 intronEst,615 intronEst,634 intronEst,664 protein blastHg18KG,113 blastHg18KG,132 cons5way,725 cons5way,750 multiz5way,726 multiz5way,751 transcriptome,274 protein-coding augustusGene,73 refGene,18 refGene,247 transcriptome,54 xenoRefGene,16 xenoRefGene,199 proteins blastHg18KG,2 blastHg18KG,4 blastHg18KG,39 refGene,388 xenoRefGene,381 provided 25mersRepeats,131 nucleosome,279 nucleosomeAdjustedCoverage,149 nucleosomeControlCoverage,168 nucleosomeDensity,118 nucleosomeStringency,91 tRNAs,318 providing augustusGene,254 rmsk,294 sangerGene,92 sangerPseudoGene,62 sangerRnaGene,87 provisional refGene,93 xenoRefGene,72 pruitt refGene,369 xenoRefGene,320 xenoRefGene,362 pseudo tRNAs,290 pseudogene sangerPseudoGene,4 sangerPseudoGene,16 sangerPseudoGene,41 pseudogenes chainCaePb1,178 chainCaePb1,192 chainCaeRem2,178 chainCaeRem2,192 chainCb3,178 chainCb3,192 chainPriPac1,178 chainPriPac1,192 chainSelf,190 chainSelf,204 sangerPseudoGene,2 tRNAs,299 psl chainCaePb1,330 chainCaeRem2,330 chainCb3,330 chainPriPac1,330 est,57 intronEst,135 mrna,38 public est,708 intronEst,786 mrna,425 publicly rmsk,241 pull-down cons5way,630 cons5way,687 multiz5way,631 multiz5way,688 refGene,221 transcriptome,137 xenoRefGene,173 purpose simpleRepeat,32 putative blastHg18KG,83 nucleosomeAdjustedCoverage,53 nucleosomeDensity,28 nucleosomeDensity,67 nucleosomeStringency,38 transcriptome,83 quality cons5way,144 est,75 mrna,56 multiz5way,145 query blastHg18KG,112 blastHg18KG,124 chainSelf,118 chainSelf,140 chainSelf,346 rmsk,47 rmsk,61 question cons5way,962 multiz5way,963 quickly mrna,330 refGene,200 transcriptome,116 xenoRefGene,152 quite simpleRepeat,45 quot chainCaePb1,63 chainCaePb1,65 chainCaePb1,250 chainCaePb1,252 chainCaeRem2,63 chainCaeRem2,65 chainCaeRem2,250 chainCaeRem2,252 chainCb3,63 chainCb3,65 chainCb3,250 chainCb3,252 chainPriPac1,63 chainPriPac1,65 chainPriPac1,250 chainPriPac1,252 chainSelf,54 chainSelf,56 chainSelf,262 chainSelf,264 cons5way,98 cons5way,100 cons5way,135 cons5way,137 cons5way,253 cons5way,258 cons5way,592 cons5way,593 cons5way,597 cons5way,598 est,241 est,243 est,281 est,283 est,297 est,299 est,333 est,335 est,350 est,352 gc5Base,58 gc5Base,62 gold,72 gold,74 intronEst,316 intronEst,318 intronEst,356 intronEst,358 intronEst,372 intronEst,374 intronEst,408 intronEst,410 intronEst,425 intronEst,427 mrna,187 mrna,189 mrna,227 mrna,229 mrna,243 mrna,245 mrna,279 mrna,281 mrna,296 mrna,298 multiz5way,99 multiz5way,101 multiz5way,136 multiz5way,138 multiz5way,254 multiz5way,259 multiz5way,593 multiz5way,594 multiz5way,598 multiz5way,599 sangerGene,41 sangerGene,43 sangerGene,45 sangerGene,47 sangerGene,54 sangerGene,56 sangerGene,57 sangerGene,59 sangerGene,60 sangerGene,62 sangerGene,63 sangerGene,65 sangerGene,66 sangerGene,68 sangerGene,70 sangerGene,72 sangerPseudoGene,40 sangerPseudoGene,42 sangerRnaGene,40 sangerRnaGene,42 sangerRnaGene,43 sangerRnaGene,45 sangerRnaGene,46 sangerRnaGene,48 sangerRnaGene,49 sangerRnaGene,51 sangerRnaGene,52 sangerRnaGene,54 sangerRnaGene,55 sangerRnaGene,57 sangerRnaGene,58 sangerRnaGene,60 sangerRnaGene,61 sangerRnaGene,63 sangerRnaGene,65 sangerRnaGene,67 tRNAs,205 tRNAs,207 tRNAs,289 tRNAs,291 windowmaskerSdust,82 windowmaskerSdust,84 r augustusGene,291 chainCaePb1,465 chainCaePb1,529 chainCaePb1,575 chainCaePb1,600 chainCaePb1,602 chainCaeRem2,465 chainCaeRem2,529 chainCaeRem2,575 chainCaeRem2,600 chainCaeRem2,602 chainCb3,465 chainCb3,529 chainCb3,575 chainCb3,600 chainCb3,602 chainPriPac1,465 chainPriPac1,529 chainPriPac1,575 chainPriPac1,600 chainPriPac1,602 chainSelf,494 chainSelf,540 chainSelf,542 cons5way,1221 cons5way,1261 cons5way,1326 multiz5way,1222 multiz5way,1262 multiz5way,1327 netCaePb1,467 netCaePb1,513 netCaePb1,515 netCaeRem2,467 netCaeRem2,513 netCaeRem2,515 netCb3,467 netCb3,513 netCb3,515 netPriPac1,467 netPriPac1,513 netPriPac1,515 phastConsElements5way,427 phastConsElements5way,478 phastConsElements5way,535 phastConsElements5way,537 tRNAs,397 windowmaskerSdust,99 ranade nucleosome,296 nucleosomeAdjustedCoverage,166 nucleosomeControlCoverage,185 nucleosomeDensity,135 nucleosomeStringency,108 random augustusGene,119 est,542 intronEst,617 random-primed est,588 intronEst,663 raney blastHg18KG,200 range nucleosome,33 tRNAs,260 ranked netCaePb1,278 netCaeRem2,278 netCb3,278 netPriPac1,278 rate cons5way,1157 multiz5way,1158 tRNAs,89 rather est,543 intronEst,618 ratio nucleosomeStringency,36 raw phastConsElements5way,297 rc cons5way,1328 multiz5way,1329 rmsk,170 read est,441 intronEst,516 nucleosome,223 nucleosome,247 reading cons5way,669 cons5way,685 cons5way,702 cons5way,728 multiz5way,670 multiz5way,686 multiz5way,703 multiz5way,729 transcriptome,100 reads gold,48 monoNucleosomesAntiSense,10 monoNucleosomesSense,10 nucleosome,73 nucleosome,133 nucleosomeAdjustedCoverage,78 nucleosomeControlAntisenseCoverage,10 nucleosomeControlCoverage,17 nucleosomeControlCoverage,54 nucleosomeControlCoverage,83 nucleosomeControlCoverage,120 nucleosomeControlSenseCoverage,10 nucleosomeDensity,21 nucleosomeDensity,43 nucleosomeDensity,60 nucleosomeDensity,82 nucleosomeFragmentsAntisense,6 nucleosomeFragmentsSense,6 rearrangement chainCaePb1,542 chainCaeRem2,542 chainCb3,542 chainPriPac1,542 chainSelf,507 cons5way,451 cons5way,1274 multiz5way,452 multiz5way,1275 netCaePb1,45 netCaePb1,182 netCaePb1,480 netCaeRem2,45 netCaeRem2,182 netCaeRem2,480 netCb3,45 netCb3,182 netCb3,480 netPriPac1,45 netPriPac1,182 netPriPac1,480 phastConsElements5way,440 reasonably est,509 est,532 intronEst,584 intronEst,607 record refGene,88 xenoRefGene,67 records refGene,63 reduced intronEst,100 reference nucleosome,111 nucleosomeAdjustedCoverage,90 nucleosomeControlCoverage,75 nucleosomeControlCoverage,141 nucleosomeDensity,52 nucleosomeDensity,91 refGene,27 refGene,46 refGene,376 xenoRefGene,31 xenoRefGene,347 xenoRefGene,369 references augustusGene,285 chainCaePb1,507 chainCaeRem2,507 chainCb3,507 chainPriPac1,507 chainSelf,472 cons5way,1141 est,714 intronEst,792 microsat,113 mrna,431 multiz5way,1142 netCaePb1,463 netCaeRem2,463 netCb3,463 netPriPac1,463 nucleosome,287 nucleosomeAdjustedCoverage,157 nucleosomeControlCoverage,176 nucleosomeDensity,126 nucleosomeStringency,99 phastConsElements5way,377 refGene,350 rmsk,103 rmsk,305 simpleRepeat,73 tRNAs,354 transcriptome,345 windowmaskerSdust,89 xenoRefGene,302 reflect cons5way,952 multiz5way,953 reflects cons5way,105 cons5way,367 multiz5way,106 multiz5way,368 rmsk,183 refseq refGene,1 refGene,3 refGene,11 refGene,30 refGene,48 refGene,62 refGene,87 refGene,266 refGene,348 refGene,378 sibTxGraph,104 sibTxGraph,238 transcriptome,20 transcriptome,44 transcriptome,170 transcriptome,322 xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,300 xenoRefGene,342 xenoRefGene,371 region chainCaePb1,162 chainCaeRem2,162 chainCb3,162 chainPriPac1,162 chainSelf,174 cons5way,334 cons5way,348 cons5way,366 cons5way,400 cons5way,428 cons5way,612 cons5way,721 cons5way,755 multiz5way,335 multiz5way,349 multiz5way,367 multiz5way,401 multiz5way,429 multiz5way,613 multiz5way,722 multiz5way,756 netCaePb1,85 netCaeRem2,85 netCb3,85 netPriPac1,85 regions augustusGene,76 chainCaePb1,96 chainCaeRem2,96 chainCb3,96 chainPriPac1,96 chainSelf,104 cons5way,919 cons5way,925 cons5way,1019 cons5way,1024 cons5way,1063 microsat,14 multiz5way,920 multiz5way,926 multiz5way,1020 multiz5way,1025 multiz5way,1064 netCaePb1,40 netCaeRem2,40 netCb3,40 netPriPac1,40 phastConsElements5way,134 phastConsElements5way,140 simpleRepeat,39 tRNAs,499 transcriptome,88 related augustusGene,242 relationship cons5way,371 est,96 intronEst,171 multiz5way,372 netCaePb1,344 netCaeRem2,344 netCb3,344 netPriPac1,344 relationships cons5way,1356 multiz5way,1357 relative cons5way,557 multiz5way,558 netCaePb1,360 netCaeRem2,360 netCb3,360 netPriPac1,360 nucleosomeAdjustedCoverage,15 relatively transcriptome,92 relevant cons5way,384 est,160 intronEst,235 mrna,106 multiz5way,385 rely cons5way,1008 multiz5way,1009 remaining blastHg18KG,186 chainCaePb1,414 chainCaeRem2,414 chainCb3,414 chainPriPac1,414 chainSelf,75 chainSelf,316 chainSelf,390 cons5way,760 multiz5way,761 remanei chainCaeRem2,2 chainCaeRem2,5 chainCaeRem2,22 chainCaeRem2,57 chainCaeRem2,111 chainCaeRem2,297 chainCaeRem2,351 cons5way,24 cons5way,68 cons5way,804 multiz5way,25 multiz5way,69 multiz5way,805 netCaeRem2,2 netCaeRem2,5 netCaeRem2,22 netCaeRem2,48 remove cons5way,217 multiz5way,218 removed chainCaePb1,302 chainCaeRem2,302 chainCb3,302 chainPriPac1,302 rendered tRNAs,346 repbase rmsk,81 rmsk,93 rmsk,306 rmsk,313 repeat 25mersRepeats,3 chainCaePb1,444 chainCaeRem2,444 chainCb3,444 chainPriPac1,444 microsat,83 rmsk,139 rmsk,146 rmsk,197 rmsk,223 rmsk,298 simpleRepeat,47 repeated 25mersRepeats,18 repeating rmsk,2 repeatmasker chainSelf,429 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,220 rmsk,251 repeats 25mersRepeats,7 chainSelf,10 chainSelf,421 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,123 rmsk,150 rmsk,154 rmsk,156 rmsk,158 rmsk,166 rmsk,262 rmsk,269 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 repetetive 25mersRepeats,11 repetitive rmsk,322 represent chainCaePb1,94 chainCaePb1,123 chainCaeRem2,94 chainCaeRem2,123 chainCb3,94 chainCb3,123 chainPriPac1,94 chainPriPac1,123 chainSelf,102 chainSelf,129 cons5way,487 est,41 intronEst,52 multiz5way,488 netCaePb1,132 netCaePb1,137 netCaeRem2,132 netCaeRem2,137 netCb3,132 netCb3,137 netPriPac1,132 netPriPac1,137 nucleosome,95 nucleosome,155 sibTxGraph,44 tRNAs,80 represented rmsk,49 transcriptome,90 representing nucleosome,51 represents cons5way,416 multiz5way,417 nucleosome,122 nucleosome,178 nucleosomeAdjustedCoverage,14 nucleosomeControlCoverage,20 nucleosomeControlCoverage,86 nucleosomeDensity,24 nucleosomeDensity,63 nucleosomeStringency,16 required tRNAs,217 requiring intronEst,88 transcriptome,32 res chainCaePb1,612 chainCaeRem2,612 chainCb3,612 chainPriPac1,612 chainSelf,552 cons5way,1201 cons5way,1338 est,729 est,749 intronEst,807 intronEst,827 microsat,127 mrna,446 mrna,466 multiz5way,1202 multiz5way,1339 netCaePb1,525 netCaeRem2,525 netCb3,525 netPriPac1,525 nucleosome,326 nucleosomeAdjustedCoverage,196 nucleosomeControlCoverage,215 nucleosomeDensity,165 nucleosomeStringency,138 phastConsElements5way,412 phastConsElements5way,497 phastConsElements5way,547 refGene,359 refGene,391 simpleRepeat,87 tRNAs,383 tRNAs,406 tRNAs,459 tRNAs,502 transcriptome,360 xenoRefGene,310 xenoRefGene,351 xenoRefGene,384 research rmsk,90 sibTxGraph,224 transcriptome,308 resolution sibTxGraph,75 result chainCaePb1,136 chainCaeRem2,136 chainCb3,136 chainPriPac1,136 chainSelf,146 resulting chainCaePb1,325 chainCaeRem2,325 chainCb3,325 chainPriPac1,325 retained phastConsElements5way,302 retrieve est,551 intronEst,626 retroposons rmsk,144 rev cons5way,994 multiz5way,995 reveals nucleosome,318 nucleosomeAdjustedCoverage,188 nucleosomeControlCoverage,207 nucleosomeDensity,157 nucleosomeStringency,130 reverse est,426 est,460 est,477 intronEst,501 intronEst,535 intronEst,552 reversible cons5way,993 multiz5way,994 review refGene,85 xenoRefGene,64 reviewed refGene,95 xenoRefGene,74 rhabditids cons5way,1361 multiz5way,1362 rho phastConsElements5way,169 phastConsElements5way,171 phastConsElements5way,172 ribosome tRNAs,157 richards cons5way,1186 multiz5way,1187 phastConsElements5way,397 riemer phastConsElements5way,469 rna est,104 est,420 intronEst,179 intronEst,495 refGene,26 refGene,290 refGene,336 rmsk,157 rmsk,160 sangerRnaGene,4 sangerRnaGene,16 sibTxGraph,24 sibTxGraph,124 sibTxGraph,170 tRNAs,4 tRNAs,375 tRNAs,398 tRNAs,452 transcriptome,41 transcriptome,45 transcriptome,190 transcriptome,236 xenoRefGene,30 xenoRefGene,242 xenoRefGene,288 rnas refGene,267 sangerRnaGene,2 sibTxGraph,107 transcriptome,173 transcriptome,265 xenoRefGene,219 robert chainCaePb1,502 chainCaeRem2,502 chainCb3,502 chainPriPac1,502 chainSelf,467 netCaePb1,458 netCaeRem2,458 netCb3,458 netPriPac1,458 rmsk,289 tRNAs,351 rolling rmsk,171 rosenbloom cons5way,1178 multiz5way,1179 phastConsElements5way,389 phastConsElements5way,479 roskin phastConsElements5way,475 ross chainCaePb1,442 chainCaeRem2,442 chainCb3,442 chainPriPac1,442 chainSelf,418 netCaePb1,444 netCaeRem2,444 netCb3,444 netPriPac1,444 rotated tRNAs,327 rough tRNAs,258 rrna rmsk,162 sangerRnaGene,47 run chainCaePb1,380 chainCaeRem2,380 chainCb3,380 chainPriPac1,380 chainSelf,369 windowmaskerSdust,53 running phastConsElements5way,114 sibTxGraph,247 transcriptome,331 runs 25mersRepeats,94 s augustusGene,104 augustusGene,221 augustusGene,319 blastHg18KG,133 chainCaePb1,537 chainCaePb1,554 chainCaePb1,592 chainCaeRem2,537 chainCaeRem2,554 chainCaeRem2,592 chainCb3,537 chainCb3,554 chainCb3,592 chainPriPac1,537 chainPriPac1,554 chainPriPac1,592 chainSelf,502 chainSelf,519 chainSelf,532 cons5way,1187 cons5way,1269 cons5way,1286 cons5way,1318 multiz5way,1188 multiz5way,1270 multiz5way,1287 multiz5way,1319 netCaePb1,475 netCaePb1,492 netCaePb1,505 netCaeRem2,475 netCaeRem2,492 netCaeRem2,505 netCb3,475 netCb3,492 netCb3,505 netPriPac1,475 netPriPac1,492 netPriPac1,505 nucleosome,297 nucleosomeAdjustedCoverage,167 nucleosomeControlCoverage,186 nucleosomeDensity,136 nucleosomeStringency,109 phastConsElements5way,322 phastConsElements5way,398 phastConsElements5way,435 phastConsElements5way,452 phastConsElements5way,527 refGene,136 refGene,146 rmsk,18 rmsk,252 tRNAs,479 saccharomyces augustusGene,223 same netCaePb1,211 netCaePb1,226 netCaeRem2,211 netCaeRem2,226 netCb3,211 netCb3,226 netPriPac1,211 netPriPac1,226 nucleosome,198 tRNAs,247 sample augustusGene,133 sampling augustusGene,129 nucleosomeControlCoverage,72 nucleosomeControlCoverage,138 sanger cons5way,791 gap,46 gold,145 multiz5way,792 sangerGene,16 sangerGene,28 sangerGene,79 sangerPseudoGene,27 sangerPseudoGene,49 sangerRnaGene,27 sangerRnaGene,74 santa chainCaePb1,477 chainCaeRem2,477 chainCb3,477 chainPriPac1,477 chainSelf,442 netCaePb1,419 netCaeRem2,419 netCb3,419 netPriPac1,419 satellite rmsk,155 scaffold cons5way,398 multiz5way,399 scale cons5way,450 multiz5way,451 nucleosome,220 nucleosomeAdjustedCoverage,29 scaling phastConsElements5way,167 sch chainCaePb1,460 chainCaePb1,570 chainCaeRem2,460 chainCaeRem2,570 chainCb3,460 chainCb3,570 chainPriPac1,460 chainPriPac1,570 windowmaskerSdust,94 school 25mersRepeats,125 nucleosome,273 nucleosomeAdjustedCoverage,143 nucleosomeControlCoverage,162 nucleosomeDensity,112 nucleosomeStringency,85 schwartz chainCaePb1,433 chainCaePb1,591 chainCaeRem2,433 chainCaeRem2,591 chainCb3,433 chainCb3,591 chainPriPac1,433 chainPriPac1,591 chainSelf,409 chainSelf,531 cons5way,1095 cons5way,1317 multiz5way,1096 multiz5way,1318 netCaePb1,435 netCaePb1,504 netCaeRem2,435 netCaeRem2,504 netCb3,435 netCb3,504 netPriPac1,435 netPriPac1,504 phastConsElements5way,349 phastConsElements5way,526 sci chainCaePb1,552 chainCaeRem2,552 chainCb3,552 chainPriPac1,552 chainSelf,517 cons5way,1284 multiz5way,1285 netCaePb1,490 netCaeRem2,490 netCb3,490 netPriPac1,490 phastConsElements5way,450 scientists est,712 intronEst,790 mrna,429 refGene,341 sibTxGraph,253 transcriptome,337 xenoRefGene,293 score cons5way,110 cons5way,222 multiz5way,111 multiz5way,223 phastConsElements5way,246 phastConsElements5way,265 tRNAs,116 tRNAs,121 tRNAs,259 scored cons5way,165 multiz5way,166 scores cons5way,93 cons5way,855 cons5way,863 cons5way,951 cons5way,1029 cons5way,1060 multiz5way,94 multiz5way,856 multiz5way,864 multiz5way,952 multiz5way,1030 multiz5way,1061 phastConsElements5way,207 phastConsElements5way,274 phastConsElements5way,282 phastConsElements5way,300 tRNAs,163 tRNAs,178 tRNAs,198 scoring chainCaePb1,37 chainCaePb1,47 chainCaePb1,388 chainCaePb1,405 chainCaePb1,514 chainCaeRem2,37 chainCaeRem2,47 chainCaeRem2,388 chainCaeRem2,405 chainCaeRem2,514 chainCb3,37 chainCb3,47 chainCb3,388 chainCb3,405 chainCb3,514 chainPriPac1,37 chainPriPac1,47 chainPriPac1,388 chainPriPac1,405 chainPriPac1,514 chainSelf,26 chainSelf,36 chainSelf,377 chainSelf,383 chainSelf,479 cons5way,1305 multiz5way,1306 phastConsElements5way,514 tRNAs,294 scott chainCaePb1,432 chainCaeRem2,432 chainCb3,432 chainPriPac1,432 chainSelf,408 cons5way,1094 multiz5way,1095 netCaePb1,434 netCaeRem2,434 netCb3,434 netPriPac1,434 phastConsElements5way,348 screens rmsk,22 scrna rmsk,164 sangerRnaGene,50 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 search blastHg18KG,168 tRNAs,62 secondary tRNAs,76 tRNAs,236 tRNAs,314 tRNAs,323 tRNAs,343 section cons5way,205 cons5way,637 multiz5way,206 multiz5way,638 rmsk,104 sections netCaePb1,301 netCaeRem2,301 netCb3,301 netPriPac1,301 see augustusGene,42 blastHg18KG,154 intronEst,118 microsat,101 nucleosome,243 refGene,257 rmsk,278 simpleRepeat,63 xenoRefGene,209 seen phastConsElements5way,310 segment cons5way,618 multiz5way,619 segments nucleosomeControlCoverage,46 nucleosomeControlCoverage,112 phastConsElements5way,222 select cons5way,623 cons5way,645 multiz5way,624 multiz5way,646 refGene,210 transcriptome,126 xenoRefGene,162 selected est,285 est,301 est,354 intronEst,360 intronEst,376 intronEst,429 mrna,231 mrna,247 mrna,300 selecting microsat,60 self chainSelf,1 chainSelf,6 semi-markov augustusGene,117 sense monoNucleosomesSense,8 nucleosome,71 nucleosome,107 nucleosomeControlCoverage,15 nucleosomeControlCoverage,45 nucleosomeControlSenseCoverage,8 nucleosomeDensity,19 nucleosomeDensity,48 nucleosomeFragmentsSense,4 sep chainCaePb1,557 chainCaeRem2,557 chainCb3,557 chainPriPac1,557 chainSelf,522 cons5way,1289 multiz5way,1290 netCaePb1,495 netCaeRem2,495 netCb3,495 netPriPac1,495 phastConsElements5way,455 rmsk,327 sequence augustusGene,32 augustusGene,70 blastHg18KG,76 chainCaePb1,130 chainCaePb1,517 chainCaeRem2,130 chainCaeRem2,517 chainCb3,130 chainCb3,517 chainPriPac1,130 chainPriPac1,517 chainSelf,48 chainSelf,136 chainSelf,482 cons5way,382 cons5way,552 cons5way,563 cons5way,1308 est,21 est,92 est,390 est,399 est,552 est,690 est,702 est,709 gap,28 gap,40 gold,32 gold,35 gold,56 gold,96 gold,127 gold,139 intronEst,22 intronEst,167 intronEst,465 intronEst,474 intronEst,627 intronEst,765 intronEst,780 intronEst,787 mrna,336 mrna,406 mrna,419 mrna,426 multiz5way,383 multiz5way,553 multiz5way,564 multiz5way,1309 netCaePb1,49 netCaeRem2,49 netCb3,49 netPriPac1,49 phastConsElements5way,517 refGene,325 refGene,337 refGene,377 refGene,382 rmsk,48 rmsk,62 tRNAs,74 tRNAs,182 tRNAs,380 tRNAs,399 tRNAs,456 transcriptome,42 windowmaskerSdust,17 xenoRefGene,277 xenoRefGene,289 xenoRefGene,370 xenoRefGene,375 sequence-dictated nucleosome,323 nucleosomeAdjustedCoverage,193 nucleosomeControlCoverage,212 nucleosomeDensity,162 nucleosomeStringency,135 sequenced chainCaePb1,580 chainCaeRem2,580 chainCb3,580 chainPriPac1,580 nucleosome,26 nucleosome,53 nucleosome,124 nucleosome,180 windowmaskerSdust,104 sequences blastHg18KG,64 cons5way,1245 est,32 est,571 est,579 intronEst,43 intronEst,646 intronEst,654 microsat,26 microsat,124 multiz5way,1246 nucleosome,194 phastConsElements5way,490 refGene,28 refGene,47 rmsk,24 rmsk,32 simpleRepeat,84 tRNAs,428 xenoRefGene,32 xenoRefGene,348 sequencing cytoBandIdeo,9 gap,6 gap,54 gc5Base,10 gold,7 gold,153 monoNucleosomesAntiSense,13 monoNucleosomesSense,13 netCaePb1,383 netCaeRem2,383 netCb3,383 netPriPac1,383 nucleosome,10 nucleosome,89 nucleosome,149 nucleosome,341 nucleosomeAdjustedCoverage,10 nucleosomeAdjustedCoverage,82 nucleosomeAdjustedCoverage,211 nucleosomeControl,6 nucleosomeControlAntisenseCoverage,13 nucleosomeControlCoverage,9 nucleosomeControlCoverage,69 nucleosomeControlCoverage,135 nucleosomeControlCoverage,230 nucleosomeControlSenseCoverage,13 nucleosomeDensity,13 nucleosomeDensity,180 nucleosomeFragmentsAntisense,9 nucleosomeFragmentsSense,9 nucleosomeStringency,12 nucleosomeStringency,153 server nucleosomeAdjustedCoverage,106 serves sibTxGraph,27 set blastHg18KG,148 phastConsElements5way,326 sibTxGraph,77 sibTxGraph,145 tRNAs,71 transcriptome,29 transcriptome,211 sets augustusGene,158 chainSelf,46 several cons5way,1071 multiz5way,1072 sf blastHg18KG,156 shade nucleosome,225 shaded est,70 mrna,51 shades nucleosome,214 shading intronEst,143 refGene,80 rmsk,178 rmsk,209 xenoRefGene,59 share phastConsElements5way,144 short cons5way,489 cons5way,1017 multiz5way,490 multiz5way,1018 rmsk,124 shorter cons5way,456 multiz5way,457 should est,321 est,604 intronEst,396 intronEst,679 mrna,267 tRNAs,226 show intronEst,31 intronEst,64 refGene,173 xenoRefGene,125 shown cons5way,151 cons5way,410 cons5way,578 cons5way,600 est,150 intronEst,225 microsat,48 mrna,96 multiz5way,152 multiz5way,411 multiz5way,579 multiz5way,601 sibTxGraph,36 shows augustusGene,15 augustusGene,108 chainCaePb1,18 chainCaeRem2,18 chainCb3,18 chainPriPac1,18 chainSelf,14 cons5way,12 cons5way,528 est,15 gc5Base,16 gold,11 intronEst,16 mrna,16 multiz5way,13 multiz5way,529 netCaePb1,18 netCaeRem2,18 netCb3,18 netPriPac1,18 phastConsElements5way,13 refGene,14 sangerGene,15 sangerGene,34 sangerPseudoGene,15 sangerPseudoGene,33 sangerRnaGene,15 sangerRnaGene,33 sibTxGraph,17 transcriptome,13 xenoRefGene,14 sib sibTxGraph,1 sibTxGraph,39 sibTxGraph,193 sibsim4 sibTxGraph,116 transcriptome,182 side cons5way,424 cons5way,433 est,567 intronEst,642 multiz5way,425 multiz5way,434 sidow 25mersRepeats,116 nucleosome,264 nucleosomeAdjustedCoverage,134 nucleosomeControlCoverage,153 nucleosomeDensity,103 nucleosomeStringency,76 siepel cons5way,38 cons5way,905 cons5way,1038 cons5way,1119 cons5way,1168 cons5way,1211 multiz5way,39 multiz5way,906 multiz5way,1039 multiz5way,1120 multiz5way,1169 multiz5way,1212 phastConsElements5way,213 phastConsElements5way,373 phastConsElements5way,379 signal augustusGene,48 augustusGene,63 signs intronEst,32 similar cons5way,275 cons5way,516 cons5way,987 multiz5way,276 multiz5way,517 multiz5way,988 simple microsat,57 microsat,85 rmsk,149 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainCaePb1,61 chainCaeRem2,61 chainCb3,61 chainPriPac1,61 chainSelf,49 since chainCaePb1,294 chainCaeRem2,294 chainCb3,294 chainPriPac1,294 sine rmsk,128 sines tRNAs,150 single blastHg18KG,101 chainCaePb1,88 chainCaePb1,97 chainCaePb1,349 chainCaePb1,355 chainCaeRem2,88 chainCaeRem2,97 chainCaeRem2,349 chainCaeRem2,355 chainCb3,88 chainCb3,97 chainCb3,349 chainCb3,355 chainPriPac1,88 chainPriPac1,97 chainPriPac1,349 chainPriPac1,355 chainSelf,96 chainSelf,105 chainSelf,340 chainSelf,345 cons5way,286 est,601 est,654 intronEst,676 intronEst,729 mrna,370 multiz5way,287 phastConsElements5way,146 refGene,289 xenoRefGene,241 single-lined chainCaePb1,171 chainCaeRem2,171 chainCb3,171 chainPriPac1,171 chainSelf,183 single-read est,31 intronEst,42 site cons5way,883 cons5way,895 cons5way,931 multiz5way,884 multiz5way,896 multiz5way,932 nucleosomeStringency,52 phastConsElements5way,62 phastConsElements5way,74 sangerGene,31 sangerPseudoGene,30 sangerRnaGene,30 sibTxGraph,165 transcriptome,231 windowmaskerSdust,45 sites augustusGene,54 augustusGene,59 cons5way,990 cons5way,1155 multiz5way,991 multiz5way,1156 size blastHg18KG,95 cons5way,107 cons5way,573 cons5way,585 cons5way,1015 multiz5way,108 multiz5way,574 multiz5way,586 multiz5way,1016 nucleosome,32 skepticism est,609 intronEst,684 sliding 25mersRepeats,36 cons5way,1011 multiz5way,1012 sm xenoRefGene,325 small refGene,128 sibTxGraph,133 transcriptome,199 smit chainCaePb1,595 chainCaeRem2,595 chainCb3,595 chainPriPac1,595 chainSelf,426 chainSelf,535 cons5way,1321 multiz5way,1322 netCaePb1,508 netCaeRem2,508 netCb3,508 netPriPac1,508 phastConsElements5way,473 phastConsElements5way,530 rmsk,17 rmsk,288 smoothness phastConsElements5way,203 snlrna sangerRnaGene,56 snorna sangerRnaGene,59 snp gold,51 snrna rmsk,163 sangerRnaGene,53 so cons5way,1016 multiz5way,1017 netCaePb1,124 netCaeRem2,124 netCb3,124 netPriPac1,124 tRNAs,277 soft-masked rmsk,264 software cons5way,1125 multiz5way,1126 rmsk,221 solely sibTxGraph,185 solid nucleosome,5 nucleosome,340 nucleosomeAdjustedCoverage,81 nucleosomeAdjustedCoverage,210 nucleosomeControlCoverage,229 nucleosomeDensity,8 nucleosomeDensity,179 nucleosomeStringency,7 nucleosomeStringency,152 some est,158 est,523 est,539 est,642 intronEst,233 intronEst,598 intronEst,614 intronEst,717 mrna,104 sometimes cons5way,1051 multiz5way,1052 simpleRepeat,50 somewhere cons5way,508 multiz5way,509 sorted netCaePb1,270 netCaeRem2,270 netCb3,270 netPriPac1,270 source nucleosomeAdjustedCoverage,95 windowmaskerSdust,33 space cons5way,568 multiz5way,569 phastConsElements5way,32 space-time cons5way,1237 multiz5way,1238 span netCaePb1,83 netCaeRem2,83 netCb3,83 netPriPac1,83 nucleosome,61 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainCaePb1,78 chainCaePb1,133 chainCaePb1,152 chainCaeRem2,78 chainCaeRem2,133 chainCaeRem2,152 chainCb3,78 chainCb3,133 chainCb3,152 chainPriPac1,78 chainPriPac1,133 chainPriPac1,152 cons5way,115 cons5way,208 cons5way,293 cons5way,320 cons5way,324 cons5way,342 cons5way,355 cons5way,360 cons5way,377 cons5way,389 cons5way,408 cons5way,445 cons5way,468 cons5way,513 cons5way,625 cons5way,668 cons5way,682 cons5way,696 cons5way,705 cons5way,718 cons5way,731 cons5way,737 cons5way,744 cons5way,761 cons5way,767 cons5way,784 cons5way,823 cons5way,845 cons5way,960 multiz5way,116 multiz5way,209 multiz5way,294 multiz5way,321 multiz5way,325 multiz5way,343 multiz5way,356 multiz5way,361 multiz5way,378 multiz5way,390 multiz5way,409 multiz5way,446 multiz5way,469 multiz5way,514 multiz5way,626 multiz5way,669 multiz5way,683 multiz5way,697 multiz5way,706 multiz5way,719 multiz5way,732 multiz5way,738 multiz5way,745 multiz5way,762 multiz5way,768 multiz5way,785 multiz5way,824 multiz5way,846 multiz5way,961 netCaePb1,389 netCaeRem2,389 netCb3,389 netPriPac1,389 phastConsElements5way,86 species-specific augustusGene,156 cons5way,757 multiz5way,758 specific cons5way,233 est,197 intronEst,272 mrna,143 multiz5way,234 simpleRepeat,53 tRNAs,70 tRNAs,233 tRNAs,270 spieth cons5way,1182 multiz5way,1183 phastConsElements5way,393 splice augustusGene,53 sibTxGraph,164 transcriptome,230 spliced intronEst,1 intronEst,9 intronEst,60 transcriptome,48 splicing augustusGene,123 intronEst,34 intronEst,89 sibTxGraph,4 sibTxGraph,34 sibTxGraph,96 sibTxGraph,139 sibTxGraph,195 transcriptome,205 transcriptome,273 split chainCaePb1,300 chainCaeRem2,300 chainCb3,300 chainPriPac1,300 springer cons5way,1230 multiz5way,1231 square cons5way,453 multiz5way,454 sr tRNAs,395 tRNAs,443 st gap,57 gold,156 stanford 25mersRepeats,124 nucleosome,272 nucleosomeAdjustedCoverage,142 nucleosomeControlCoverage,161 nucleosomeDensity,111 nucleosomeStringency,84 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start 25mersRepeats,53 augustusGene,58 est,531 intronEst,606 sibTxGraph,166 transcriptome,232 starting nucleosome,195 nucleosome,249 nucleosomeControlCoverage,47 nucleosomeControlCoverage,113 state chainCaePb1,427 chainCaeRem2,427 chainCb3,427 chainPriPac1,427 chainSelf,403 cons5way,916 cons5way,922 cons5way,946 cons5way,1102 multiz5way,917 multiz5way,923 multiz5way,947 multiz5way,1103 netCaePb1,429 netCaeRem2,429 netCb3,429 netPriPac1,429 phastConsElements5way,131 phastConsElements5way,137 phastConsElements5way,161 phastConsElements5way,236 phastConsElements5way,356 states phastConsElements5way,143 statistical augustusGene,47 cons5way,1223 multiz5way,1224 stefanie augustusGene,267 still tRNAs,142 storage chainCaePb1,495 chainCaeRem2,495 chainCb3,495 chainPriPac1,495 chainSelf,460 netCaePb1,451 netCaeRem2,451 netCb3,451 netPriPac1,451 strand chainCaePb1,207 chainCaeRem2,207 chainCb3,207 chainPriPac1,207 chainSelf,219 est,77 intronEst,152 monoNucleosomesAntiSense,9 monoNucleosomesSense,9 nucleosome,72 nucleosome,108 nucleosome,132 nucleosomeControlAntisenseCoverage,9 nucleosomeControlCoverage,16 nucleosomeControlCoverage,82 nucleosomeControlSenseCoverage,9 nucleosomeDensity,20 nucleosomeDensity,49 nucleosomeDensity,59 nucleosomeDensity,88 nucleosomeFragmentsAntisense,5 nucleosomeFragmentsSense,5 strands nucleosome,168 stringency nucleosomeStringency,2 nucleosomeStringency,5 nucleosomeStringency,17 nucleosomeStringency,30 strings sangerGene,53 structural tRNAs,184 structure augustusGene,113 tRNAs,77 tRNAs,237 tRNAs,315 structures augustusGene,164 tRNAs,324 tRNAs,344 stuart nucleosome,294 nucleosomeAdjustedCoverage,164 nucleosomeControlCoverage,183 nucleosomeDensity,133 nucleosomeStringency,106 studies tRNAs,272 studying netCaePb1,43 netCaeRem2,43 netCb3,43 netPriPac1,43 sub-tracks nucleosome,193 subject phastConsElements5way,188 submit refGene,53 submitted est,704 intronEst,782 mrna,421 submodel augustusGene,331 subsections chainCaePb1,370 chainCaeRem2,370 chainCb3,370 chainPriPac1,370 chainSelf,359 subset est,136 intronEst,211 microsat,54 mrna,82 sangerGene,36 sangerPseudoGene,35 sangerRnaGene,35 substantial chainCaePb1,129 chainCaeRem2,129 chainCb3,129 chainPriPac1,129 chainSelf,135 substitution cons5way,880 cons5way,970 cons5way,995 multiz5way,881 multiz5way,971 multiz5way,996 phastConsElements5way,59 successful est,561 intronEst,636 such netCaePb1,350 netCaeRem2,350 netCb3,350 netPriPac1,350 sibTxGraph,54 sufficient cons5way,567 multiz5way,568 suggestions refGene,52 suppl augustusGene,336 supplied 25mersRepeats,113 nucleosome,261 nucleosomeAdjustedCoverage,131 nucleosomeControlCoverage,150 nucleosomeDensity,100 nucleosomeStringency,73 support transcriptome,34 supported nucleosome,336 nucleosomeAdjustedCoverage,206 nucleosomeControlCoverage,225 nucleosomeDensity,175 nucleosomeStringency,148 swiss sibTxGraph,7 sibTxGraph,227 transcriptome,311 symbols cons5way,538 multiz5way,539 symp chainCaePb1,520 chainCaeRem2,520 chainCb3,520 chainPriPac1,520 chainSelf,485 cons5way,1311 multiz5way,1312 phastConsElements5way,520 syn netCaePb1,207 netCaeRem2,207 netCb3,207 netPriPac1,207 syntenic netCaePb1,357 netCaeRem2,357 netCb3,357 netPriPac1,357 syntenically augustusGene,297 system chainCaePb1,38 chainCaeRem2,38 chainCb3,38 chainPriPac1,38 chainSelf,27 chainSelf,39 systems chainCaePb1,48 chainCaeRem2,48 chainCb3,48 chainPriPac1,48 chainSelf,37 t nucleosome,293 nucleosomeAdjustedCoverage,163 nucleosomeControlCoverage,182 nucleosomeDensity,132 nucleosomeStringency,105 refGene,372 xenoRefGene,365 t-123-31-11491 chainCaePb1,403 chainCaeRem2,403 chainCb3,403 chainPriPac1,403 table augustusGene,225 est,222 est,225 est,244 intronEst,297 intronEst,300 intronEst,319 mrna,168 mrna,171 mrna,190 windowmaskerSdust,85 tabulated 25mersRepeats,69 tags est,22 intronEst,23 tail est,472 intronEst,547 taken est,443 intronEst,518 refGene,22 xenoRefGene,26 taking phastConsElements5way,275 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 target chainSelf,125 chainSelf,142 chainSelf,341 task est,164 intronEst,239 mrna,110 tatusova refGene,371 xenoRefGene,364 tblastn blastHg18KG,8 blastHg18KG,17 blastHg18KG,79 blastHg18KG,140 techniques est,537 intronEst,612 technology nucleosome,342 nucleosomeAdjustedCoverage,212 nucleosomeControlCoverage,231 nucleosomeDensity,181 nucleosomeStringency,154 temperature augustusGene,141 ten rmsk,119 tend microsat,37 tendency cons5way,974 multiz5way,975 term est,171 intronEst,246 mrna,117 terminal rmsk,138 terms est,215 intronEst,290 mrna,161 text est,178 est,218 est,258 intronEst,253 intronEst,293 intronEst,333 mrna,124 mrna,164 mrna,204 than 25mersRepeats,75 blastHg18KG,108 chainCaePb1,43 chainCaeRem2,43 chainCb3,43 chainPriPac1,43 chainSelf,32 est,272 est,544 intronEst,347 intronEst,619 mrna,218 netCaePb1,196 netCaeRem2,196 netCb3,196 netPriPac1,196 nucleosome,231 refGene,283 rmsk,237 tRNAs,92 xenoRefGene,23 xenoRefGene,235 thanks augustusGene,248 rmsk,285 sangerGene,86 sangerPseudoGene,56 sangerRnaGene,81 sibTxGraph,243 transcriptome,327 that 25mersRepeats,25 25mersRepeats,72 blastHg18KG,65 blastHg18KG,118 chainCaePb1,39 chainCaePb1,101 chainCaePb1,127 chainCaePb1,277 chainCaePb1,290 chainCaeRem2,39 chainCaeRem2,101 chainCaeRem2,127 chainCaeRem2,277 chainCaeRem2,290 chainCb3,39 chainCb3,101 chainCb3,127 chainCb3,277 chainCb3,290 chainPriPac1,39 chainPriPac1,101 chainPriPac1,127 chainPriPac1,277 chainPriPac1,290 chainSelf,28 chainSelf,109 chainSelf,133 chainSelf,289 cons5way,141 cons5way,419 cons5way,502 cons5way,745 cons5way,873 cons5way,936 cons5way,1000 est,39 est,66 est,120 est,227 est,251 est,288 est,303 est,320 est,344 est,362 est,379 est,394 est,627 est,648 intronEst,6 intronEst,30 intronEst,50 intronEst,74 intronEst,195 intronEst,302 intronEst,326 intronEst,363 intronEst,378 intronEst,395 intronEst,419 intronEst,437 intronEst,454 intronEst,469 intronEst,702 intronEst,723 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,234 mrna,249 mrna,266 mrna,290 mrna,308 mrna,325 multiz5way,142 multiz5way,420 multiz5way,503 multiz5way,746 multiz5way,874 multiz5way,937 multiz5way,1001 netCaePb1,82 netCaePb1,104 netCaePb1,320 netCaePb1,331 netCaeRem2,82 netCaeRem2,104 netCaeRem2,320 netCaeRem2,331 netCb3,82 netCb3,104 netCb3,320 netCb3,331 netPriPac1,82 netPriPac1,104 netPriPac1,320 netPriPac1,331 nucleosome,58 nucleosome,103 nucleosome,163 nucleosome,251 nucleosomeControlCoverage,64 nucleosomeControlCoverage,130 nucleosomeDensity,44 nucleosomeDensity,83 phastConsElements5way,52 phastConsElements5way,150 phastConsElements5way,226 refGene,196 rmsk,42 rmsk,231 rmsk,239 sibTxGraph,55 sibTxGraph,171 sibTxGraph,181 tRNAs,29 tRNAs,79 tRNAs,186 tRNAs,284 tRNAs,296 transcriptome,112 transcriptome,237 transcriptome,247 xenoRefGene,148 the 25mersRepeats,10 25mersRepeats,15 25mersRepeats,29 25mersRepeats,44 25mersRepeats,49 25mersRepeats,52 25mersRepeats,59 25mersRepeats,66 25mersRepeats,86 25mersRepeats,107 25mersRepeats,115 25mersRepeats,119 25mersRepeats,123 augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 blastHg18KG,20 blastHg18KG,23 blastHg18KG,30 blastHg18KG,37 blastHg18KG,41 blastHg18KG,49 blastHg18KG,53 blastHg18KG,61 blastHg18KG,73 blastHg18KG,78 blastHg18KG,82 blastHg18KG,100 blastHg18KG,111 blastHg18KG,123 blastHg18KG,131 blastHg18KG,144 blastHg18KG,185 chainCaePb1,30 chainCaePb1,79 chainCaePb1,92 chainCaePb1,109 chainCaePb1,117 chainCaePb1,164 chainCaePb1,168 chainCaePb1,194 chainCaePb1,200 chainCaePb1,205 chainCaePb1,213 chainCaePb1,225 chainCaePb1,240 chainCaePb1,246 chainCaePb1,249 chainCaePb1,264 chainCaePb1,270 chainCaePb1,274 chainCaePb1,295 chainCaePb1,304 chainCaePb1,306 chainCaePb1,317 chainCaePb1,324 chainCaePb1,333 chainCaePb1,336 chainCaePb1,368 chainCaePb1,373 chainCaePb1,382 chainCaePb1,386 chainCaePb1,393 chainCaePb1,413 chainCaePb1,449 chainCaePb1,466 chainCaePb1,472 chainCaePb1,490 chainCaePb1,497 chainCaePb1,544 chainCaeRem2,30 chainCaeRem2,79 chainCaeRem2,92 chainCaeRem2,109 chainCaeRem2,117 chainCaeRem2,164 chainCaeRem2,168 chainCaeRem2,194 chainCaeRem2,200 chainCaeRem2,205 chainCaeRem2,213 chainCaeRem2,225 chainCaeRem2,240 chainCaeRem2,246 chainCaeRem2,249 chainCaeRem2,264 chainCaeRem2,270 chainCaeRem2,274 chainCaeRem2,295 chainCaeRem2,304 chainCaeRem2,306 chainCaeRem2,317 chainCaeRem2,324 chainCaeRem2,333 chainCaeRem2,336 chainCaeRem2,368 chainCaeRem2,373 chainCaeRem2,382 chainCaeRem2,386 chainCaeRem2,393 chainCaeRem2,413 chainCaeRem2,449 chainCaeRem2,466 chainCaeRem2,472 chainCaeRem2,490 chainCaeRem2,497 chainCaeRem2,544 chainCb3,30 chainCb3,79 chainCb3,92 chainCb3,109 chainCb3,117 chainCb3,164 chainCb3,168 chainCb3,194 chainCb3,200 chainCb3,205 chainCb3,213 chainCb3,225 chainCb3,240 chainCb3,246 chainCb3,249 chainCb3,264 chainCb3,270 chainCb3,274 chainCb3,295 chainCb3,304 chainCb3,306 chainCb3,317 chainCb3,324 chainCb3,333 chainCb3,336 chainCb3,368 chainCb3,373 chainCb3,382 chainCb3,386 chainCb3,393 chainCb3,413 chainCb3,449 chainCb3,466 chainCb3,472 chainCb3,490 chainCb3,497 chainCb3,544 chainPriPac1,30 chainPriPac1,79 chainPriPac1,92 chainPriPac1,109 chainPriPac1,117 chainPriPac1,164 chainPriPac1,168 chainPriPac1,194 chainPriPac1,200 chainPriPac1,205 chainPriPac1,213 chainPriPac1,225 chainPriPac1,240 chainPriPac1,246 chainPriPac1,249 chainPriPac1,264 chainPriPac1,270 chainPriPac1,274 chainPriPac1,295 chainPriPac1,304 chainPriPac1,306 chainPriPac1,317 chainPriPac1,324 chainPriPac1,333 chainPriPac1,336 chainPriPac1,368 chainPriPac1,373 chainPriPac1,382 chainPriPac1,386 chainPriPac1,393 chainPriPac1,413 chainPriPac1,449 chainPriPac1,466 chainPriPac1,472 chainPriPac1,490 chainPriPac1,497 chainPriPac1,544 chainSelf,17 chainSelf,38 chainSelf,53 chainSelf,63 chainSelf,74 chainSelf,83 chainSelf,87 chainSelf,100 chainSelf,117 chainSelf,124 chainSelf,139 chainSelf,163 chainSelf,176 chainSelf,180 chainSelf,206 chainSelf,212 chainSelf,217 chainSelf,225 chainSelf,237 chainSelf,252 chainSelf,258 chainSelf,261 chainSelf,276 chainSelf,282 chainSelf,286 chainSelf,301 chainSelf,315 chainSelf,324 chainSelf,327 chainSelf,357 chainSelf,362 chainSelf,371 chainSelf,375 chainSelf,389 chainSelf,431 chainSelf,437 chainSelf,455 chainSelf,462 chainSelf,509 cons5way,45 cons5way,103 cons5way,106 cons5way,109 cons5way,117 cons5way,168 cons5way,184 cons5way,188 cons5way,197 cons5way,202 cons5way,210 cons5way,220 cons5way,229 cons5way,237 cons5way,248 cons5way,252 cons5way,269 cons5way,277 cons5way,281 cons5way,291 cons5way,301 cons5way,305 cons5way,314 cons5way,318 cons5way,332 cons5way,347 cons5way,350 cons5way,364 cons5way,370 cons5way,373 cons5way,387 cons5way,394 cons5way,402 cons5way,406 cons5way,435 cons5way,443 cons5way,466 cons5way,481 cons5way,484 cons5way,498 cons5way,511 cons5way,523 cons5way,526 cons5way,529 cons5way,535 cons5way,540 cons5way,544 cons5way,549 cons5way,559 cons5way,570 cons5way,572 cons5way,575 cons5way,583 cons5way,610 cons5way,624 cons5way,629 cons5way,633 cons5way,639 cons5way,642 cons5way,648 cons5way,654 cons5way,660 cons5way,673 cons5way,676 cons5way,680 cons5way,694 cons5way,699 cons5way,720 cons5way,753 cons5way,759 cons5way,765 cons5way,772 cons5way,777 cons5way,783 cons5way,831 cons5way,841 cons5way,844 cons5way,858 cons5way,876 cons5way,888 cons5way,897 cons5way,926 cons5way,933 cons5way,937 cons5way,944 cons5way,948 cons5way,953 cons5way,959 cons5way,968 cons5way,982 cons5way,991 cons5way,1053 cons5way,1065 cons5way,1076 cons5way,1089 cons5way,1100 cons5way,1131 cons5way,1241 cons5way,1276 cons5way,1354 est,27 est,53 est,64 est,76 est,80 est,83 est,86 est,89 est,98 est,103 est,111 est,126 est,130 est,140 est,152 est,162 est,167 est,177 est,182 est,189 est,200 est,203 est,206 est,211 est,221 est,224 est,230 est,240 est,247 est,256 est,266 est,276 est,308 est,315 est,329 est,338 est,346 est,355 est,364 est,381 est,388 est,397 est,408 est,431 est,445 est,459 est,470 est,476 est,486 est,490 est,501 est,505 est,512 est,521 est,525 est,535 est,555 est,581 est,587 est,622 est,628 est,660 est,663 est,679 est,688 est,706 est,744 gap,13 gap,19 gap,39 gap,45 gap,52 gc5Base,12 gc5Base,17 gc5Base,53 gc5Base,57 gc5Base,68 gc5Base,72 gold,12 gold,16 gold,34 gold,50 gold,59 gold,63 gold,81 gold,84 gold,88 gold,94 gold,102 gold,118 gold,138 gold,144 gold,151 intronEst,28 intronEst,38 intronEst,90 intronEst,95 intronEst,102 intronEst,119 intronEst,131 intronEst,151 intronEst,155 intronEst,158 intronEst,161 intronEst,164 intronEst,173 intronEst,178 intronEst,186 intronEst,201 intronEst,205 intronEst,215 intronEst,227 intronEst,237 intronEst,242 intronEst,252 intronEst,257 intronEst,264 intronEst,275 intronEst,278 intronEst,281 intronEst,286 intronEst,296 intronEst,299 intronEst,305 intronEst,315 intronEst,322 intronEst,331 intronEst,341 intronEst,351 intronEst,383 intronEst,390 intronEst,404 intronEst,413 intronEst,421 intronEst,430 intronEst,439 intronEst,456 intronEst,463 intronEst,472 intronEst,483 intronEst,506 intronEst,520 intronEst,534 intronEst,545 intronEst,551 intronEst,561 intronEst,565 intronEst,576 intronEst,580 intronEst,587 intronEst,596 intronEst,600 intronEst,610 intronEst,630 intronEst,656 intronEst,662 intronEst,697 intronEst,703 intronEst,735 intronEst,738 intronEst,754 intronEst,763 intronEst,784 intronEst,822 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,212 mrna,222 mrna,254 mrna,261 mrna,275 mrna,284 mrna,292 mrna,301 mrna,310 mrna,327 mrna,334 mrna,345 mrna,362 mrna,365 mrna,376 mrna,379 mrna,395 mrna,404 mrna,410 mrna,423 mrna,461 multiz5way,46 multiz5way,104 multiz5way,107 multiz5way,110 multiz5way,118 multiz5way,169 multiz5way,185 multiz5way,189 multiz5way,198 multiz5way,203 multiz5way,211 multiz5way,221 multiz5way,230 multiz5way,238 multiz5way,249 multiz5way,253 multiz5way,270 multiz5way,278 multiz5way,282 multiz5way,292 multiz5way,302 multiz5way,306 multiz5way,315 multiz5way,319 multiz5way,333 multiz5way,348 multiz5way,351 multiz5way,365 multiz5way,371 multiz5way,374 multiz5way,388 multiz5way,395 multiz5way,403 multiz5way,407 multiz5way,436 multiz5way,444 multiz5way,467 multiz5way,482 multiz5way,485 multiz5way,499 multiz5way,512 multiz5way,524 multiz5way,527 multiz5way,530 multiz5way,536 multiz5way,541 multiz5way,545 multiz5way,550 multiz5way,560 multiz5way,571 multiz5way,573 multiz5way,576 multiz5way,584 multiz5way,611 multiz5way,625 multiz5way,630 multiz5way,634 multiz5way,640 multiz5way,643 multiz5way,649 multiz5way,655 multiz5way,661 multiz5way,674 multiz5way,677 multiz5way,681 multiz5way,695 multiz5way,700 multiz5way,721 multiz5way,754 multiz5way,760 multiz5way,766 multiz5way,773 multiz5way,778 multiz5way,784 multiz5way,832 multiz5way,842 multiz5way,845 multiz5way,859 multiz5way,877 multiz5way,889 multiz5way,898 multiz5way,927 multiz5way,934 multiz5way,938 multiz5way,945 multiz5way,949 multiz5way,954 multiz5way,960 multiz5way,969 multiz5way,983 multiz5way,992 multiz5way,1054 multiz5way,1066 multiz5way,1077 multiz5way,1090 multiz5way,1101 multiz5way,1132 multiz5way,1242 multiz5way,1277 multiz5way,1355 netCaePb1,19 netCaePb1,30 netCaePb1,46 netCaePb1,56 netCaePb1,72 netCaePb1,78 netCaePb1,92 netCaePb1,110 netCaePb1,127 netCaePb1,130 netCaePb1,135 netCaePb1,148 netCaePb1,161 netCaePb1,163 netCaePb1,170 netCaePb1,173 netCaePb1,180 netCaePb1,186 netCaePb1,199 netCaePb1,210 netCaePb1,214 netCaePb1,217 netCaePb1,225 netCaePb1,229 netCaePb1,235 netCaePb1,246 netCaePb1,249 netCaePb1,260 netCaePb1,264 netCaePb1,272 netCaePb1,276 netCaePb1,280 netCaePb1,288 netCaePb1,333 netCaePb1,343 netCaePb1,362 netCaePb1,365 netCaePb1,377 netCaePb1,401 netCaePb1,406 netCaePb1,415 netCaePb1,446 netCaePb1,453 netCaePb1,482 netCaeRem2,19 netCaeRem2,30 netCaeRem2,46 netCaeRem2,56 netCaeRem2,72 netCaeRem2,78 netCaeRem2,92 netCaeRem2,110 netCaeRem2,127 netCaeRem2,130 netCaeRem2,135 netCaeRem2,148 netCaeRem2,161 netCaeRem2,163 netCaeRem2,170 netCaeRem2,173 netCaeRem2,180 netCaeRem2,186 netCaeRem2,199 netCaeRem2,210 netCaeRem2,214 netCaeRem2,217 netCaeRem2,225 netCaeRem2,229 netCaeRem2,235 netCaeRem2,246 netCaeRem2,249 netCaeRem2,260 netCaeRem2,264 netCaeRem2,272 netCaeRem2,276 netCaeRem2,280 netCaeRem2,288 netCaeRem2,333 netCaeRem2,343 netCaeRem2,362 netCaeRem2,365 netCaeRem2,377 netCaeRem2,401 netCaeRem2,406 netCaeRem2,415 netCaeRem2,446 netCaeRem2,453 netCaeRem2,482 netCb3,19 netCb3,30 netCb3,46 netCb3,56 netCb3,72 netCb3,78 netCb3,92 netCb3,110 netCb3,127 netCb3,130 netCb3,135 netCb3,148 netCb3,161 netCb3,163 netCb3,170 netCb3,173 netCb3,180 netCb3,186 netCb3,199 netCb3,210 netCb3,214 netCb3,217 netCb3,225 netCb3,229 netCb3,235 netCb3,246 netCb3,249 netCb3,260 netCb3,264 netCb3,272 netCb3,276 netCb3,280 netCb3,288 netCb3,333 netCb3,343 netCb3,362 netCb3,365 netCb3,377 netCb3,401 netCb3,406 netCb3,415 netCb3,446 netCb3,453 netCb3,482 netPriPac1,19 netPriPac1,30 netPriPac1,46 netPriPac1,56 netPriPac1,72 netPriPac1,78 netPriPac1,92 netPriPac1,110 netPriPac1,127 netPriPac1,130 netPriPac1,135 netPriPac1,148 netPriPac1,161 netPriPac1,163 netPriPac1,170 netPriPac1,173 netPriPac1,180 netPriPac1,186 netPriPac1,199 netPriPac1,210 netPriPac1,214 netPriPac1,217 netPriPac1,225 netPriPac1,229 netPriPac1,235 netPriPac1,246 netPriPac1,249 netPriPac1,260 netPriPac1,264 netPriPac1,272 netPriPac1,276 netPriPac1,280 netPriPac1,288 netPriPac1,333 netPriPac1,343 netPriPac1,362 netPriPac1,365 netPriPac1,377 netPriPac1,401 netPriPac1,406 netPriPac1,415 netPriPac1,446 netPriPac1,453 netPriPac1,482 nucleosome,15 nucleosome,21 nucleosome,31 nucleosome,45 nucleosome,52 nucleosome,106 nucleosome,110 nucleosome,113 nucleosome,123 nucleosome,127 nucleosome,166 nucleosome,169 nucleosome,179 nucleosome,183 nucleosome,192 nucleosome,197 nucleosome,206 nucleosome,209 nucleosome,217 nucleosome,244 nucleosome,255 nucleosome,263 nucleosome,267 nucleosome,271 nucleosomeAdjustedCoverage,12 nucleosomeAdjustedCoverage,22 nucleosomeAdjustedCoverage,30 nucleosomeAdjustedCoverage,50 nucleosomeAdjustedCoverage,71 nucleosomeAdjustedCoverage,89 nucleosomeAdjustedCoverage,94 nucleosomeAdjustedCoverage,119 nucleosomeAdjustedCoverage,125 nucleosomeAdjustedCoverage,133 nucleosomeAdjustedCoverage,137 nucleosomeAdjustedCoverage,141 nucleosomeControlCoverage,18 nucleosomeControlCoverage,38 nucleosomeControlCoverage,51 nucleosomeControlCoverage,74 nucleosomeControlCoverage,84 nucleosomeControlCoverage,104 nucleosomeControlCoverage,117 nucleosomeControlCoverage,140 nucleosomeControlCoverage,144 nucleosomeControlCoverage,152 nucleosomeControlCoverage,156 nucleosomeControlCoverage,160 nucleosomeDensity,22 nucleosomeDensity,25 nucleosomeDensity,47 nucleosomeDensity,51 nucleosomeDensity,61 nucleosomeDensity,64 nucleosomeDensity,86 nucleosomeDensity,90 nucleosomeDensity,94 nucleosomeDensity,102 nucleosomeDensity,106 nucleosomeDensity,110 nucleosomeStringency,14 nucleosomeStringency,22 nucleosomeStringency,54 nucleosomeStringency,67 nucleosomeStringency,75 nucleosomeStringency,79 nucleosomeStringency,83 phastConsElements5way,20 phastConsElements5way,27 phastConsElements5way,36 phastConsElements5way,55 phastConsElements5way,67 phastConsElements5way,76 phastConsElements5way,117 phastConsElements5way,121 phastConsElements5way,141 phastConsElements5way,151 phastConsElements5way,155 phastConsElements5way,159 phastConsElements5way,176 phastConsElements5way,193 phastConsElements5way,196 phastConsElements5way,202 phastConsElements5way,205 phastConsElements5way,217 phastConsElements5way,224 phastConsElements5way,234 phastConsElements5way,238 phastConsElements5way,253 phastConsElements5way,261 phastConsElements5way,264 phastConsElements5way,281 phastConsElements5way,290 phastConsElements5way,296 phastConsElements5way,304 phastConsElements5way,312 phastConsElements5way,317 phastConsElements5way,320 phastConsElements5way,339 phastConsElements5way,354 phastConsElements5way,442 phastConsElements5way,492 refGene,10 refGene,24 refGene,31 refGene,41 refGene,71 refGene,78 refGene,82 refGene,86 refGene,97 refGene,112 refGene,115 refGene,118 refGene,127 refGene,131 refGene,134 refGene,141 refGene,144 refGene,159 refGene,165 refGene,170 refGene,175 refGene,183 refGene,211 refGene,216 refGene,225 refGene,246 refGene,259 refGene,271 refGene,295 refGene,298 refGene,314 refGene,323 refGene,346 refGene,354 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,102 rmsk,174 rmsk,180 rmsk,184 rmsk,199 rmsk,201 rmsk,206 rmsk,208 rmsk,214 rmsk,219 rmsk,244 rmsk,250 rmsk,279 rmsk,295 sangerGene,11 sangerGene,20 sangerGene,27 sangerGene,35 sangerGene,74 sangerGene,78 sangerGene,88 sangerPseudoGene,11 sangerPseudoGene,19 sangerPseudoGene,26 sangerPseudoGene,34 sangerPseudoGene,44 sangerPseudoGene,48 sangerPseudoGene,58 sangerRnaGene,11 sangerRnaGene,19 sangerRnaGene,26 sangerRnaGene,34 sangerRnaGene,69 sangerRnaGene,73 sangerRnaGene,83 sibTxGraph,18 sibTxGraph,31 sibTxGraph,38 sibTxGraph,42 sibTxGraph,49 sibTxGraph,66 sibTxGraph,74 sibTxGraph,84 sibTxGraph,90 sibTxGraph,95 sibTxGraph,113 sibTxGraph,119 sibTxGraph,192 sibTxGraph,201 sibTxGraph,219 sibTxGraph,226 sibTxGraph,245 sibTxGraph,252 simpleRepeat,60 tRNAs,52 tRNAs,114 tRNAs,139 tRNAs,156 tRNAs,204 tRNAs,216 tRNAs,246 tRNAs,317 tRNAs,321 tRNAs,336 tRNAs,363 transcriptome,10 transcriptome,33 transcriptome,50 transcriptome,58 transcriptome,73 transcriptome,80 transcriptome,127 transcriptome,132 transcriptome,150 transcriptome,157 transcriptome,162 transcriptome,179 transcriptome,185 transcriptome,249 transcriptome,258 transcriptome,263 transcriptome,279 transcriptome,285 transcriptome,303 transcriptome,310 transcriptome,329 transcriptome,336 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,183 xenoRefGene,198 xenoRefGene,211 xenoRefGene,218 xenoRefGene,223 xenoRefGene,247 xenoRefGene,250 xenoRefGene,266 xenoRefGene,275 xenoRefGene,298 their 25mersRepeats,103 them cons5way,218 multiz5way,219 netCaePb1,295 netCaeRem2,295 netCb3,295 netPriPac1,295 rmsk,277 sibTxGraph,260 tRNAs,280 transcriptome,344 then chainCaePb1,320 chainCaePb1,379 chainCaeRem2,320 chainCaeRem2,379 chainCb3,320 chainCb3,379 chainPriPac1,320 chainPriPac1,379 chainSelf,368 cons5way,245 cons5way,644 cons5way,835 cons5way,852 multiz5way,246 multiz5way,645 multiz5way,836 multiz5way,853 netCaePb1,284 netCaePb1,369 netCaeRem2,284 netCaeRem2,369 netCb3,284 netCb3,369 netPriPac1,284 netPriPac1,369 phastConsElements5way,98 phastConsElements5way,111 tRNAs,54 there cons5way,565 est,590 gap,8 gold,110 intronEst,665 multiz5way,566 these augustusGene,95 augustusGene,190 chainCaePb1,62 chainCaePb1,391 chainCaeRem2,62 chainCaeRem2,391 chainCb3,62 chainCb3,391 chainPriPac1,62 chainPriPac1,391 chainSelf,380 cons5way,849 cons5way,950 est,558 intronEst,633 microsat,24 multiz5way,850 multiz5way,951 netCaePb1,97 netCaeRem2,97 netCb3,97 netPriPac1,97 phastConsElements5way,101 rmsk,205 rmsk,228 rmsk,232 sangerGene,52 sangerGene,93 sangerPseudoGene,63 sangerRnaGene,88 sibTxGraph,248 simpleRepeat,33 tRNAs,56 tRNAs,223 tRNAs,257 tRNAs,303 tRNAs,359 transcriptome,332 they chainCaePb1,236 chainCaeRem2,236 chainCb3,236 chainPriPac1,236 chainSelf,248 tRNAs,188 tRNAs,267 thibaud-nissen xenoRefGene,326 thick nucleosome,49 nucleosome,114 nucleosome,170 thicker transcriptome,103 thin transcriptome,93 this 25mersRepeats,110 augustusGene,13 augustusGene,106 augustusGene,224 blastHg18KG,14 blastHg18KG,191 chainCaePb1,16 chainCaePb1,134 chainCaePb1,419 chainCaeRem2,16 chainCaeRem2,134 chainCaeRem2,419 chainCb3,16 chainCb3,134 chainCb3,419 chainPriPac1,16 chainPriPac1,134 chainPriPac1,419 chainSelf,12 chainSelf,144 chainSelf,395 cons5way,10 cons5way,52 cons5way,214 cons5way,621 cons5way,890 cons5way,1082 est,13 est,50 est,115 est,142 est,367 est,404 est,563 est,599 est,612 est,694 gc5Base,38 gc5Base,77 gold,9 gold,20 gold,78 gold,115 intronEst,14 intronEst,128 intronEst,190 intronEst,217 intronEst,442 intronEst,479 intronEst,638 intronEst,674 intronEst,687 intronEst,769 intronEst,772 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,313 mrna,341 multiz5way,11 multiz5way,53 multiz5way,215 multiz5way,622 multiz5way,891 multiz5way,1083 netCaePb1,16 netCaePb1,52 netCaePb1,84 netCaePb1,310 netCaeRem2,16 netCaeRem2,52 netCaeRem2,84 netCaeRem2,310 netCb3,16 netCb3,52 netCb3,84 netCb3,310 netPriPac1,16 netPriPac1,52 netPriPac1,84 netPriPac1,310 nucleosome,258 nucleosomeAdjustedCoverage,98 nucleosomeAdjustedCoverage,114 nucleosomeAdjustedCoverage,128 nucleosomeControlCoverage,147 nucleosomeDensity,97 nucleosomeStringency,70 phastConsElements5way,11 phastConsElements5way,69 phastConsElements5way,185 phastConsElements5way,269 phastConsElements5way,332 refGene,34 refGene,68 refGene,106 refGene,122 refGene,188 refGene,238 refGene,263 refGene,329 rmsk,10 rmsk,51 rmsk,114 rmsk,303 sangerGene,32 sangerPseudoGene,31 sangerRnaGene,31 sibTxGraph,15 sibTxGraph,149 simpleRepeat,12 simpleRepeat,31 tRNAs,14 tRNAs,134 transcriptome,24 transcriptome,68 transcriptome,104 transcriptome,145 transcriptome,215 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,179 xenoRefGene,215 xenoRefGene,281 those cons5way,554 cons5way,717 cons5way,743 est,360 est,393 intronEst,435 intronEst,468 microsat,62 mrna,306 multiz5way,555 multiz5way,718 multiz5way,744 refGene,277 rmsk,238 tRNAs,176 transcriptome,96 xenoRefGene,229 thousands chainCaePb1,211 chainCaeRem2,211 chainCb3,211 chainPriPac1,211 chainSelf,223 threaded phastConsElements5way,493 three_prime_utr sangerGene,67 threshold chainCaePb1,408 chainCaeRem2,408 chainCb3,408 chainPriPac1,408 chainSelf,386 through gold,83 refGene,111 refGene,140 rmsk,268 xenoRefGene,90 thrown sibTxGraph,136 transcriptome,202 thus 25mersRepeats,93 time netCaePb1,293 netCaeRem2,293 netCb3,293 netPriPac1,293 phastConsElements5way,33 tissue est,207 est,242 est,257 intronEst,282 intronEst,317 intronEst,332 mrna,153 mrna,188 mrna,203 tissues est,250 intronEst,325 mrna,196 tm tRNAs,369 tRNAs,441 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 blastHg18KG,56 blastHg18KG,189 chainCaePb1,29 chainCaePb1,105 chainCaePb1,176 chainCaePb1,188 chainCaePb1,227 chainCaePb1,238 chainCaePb1,243 chainCaePb1,255 chainCaePb1,261 chainCaePb1,284 chainCaePb1,384 chainCaeRem2,29 chainCaeRem2,105 chainCaeRem2,176 chainCaeRem2,188 chainCaeRem2,227 chainCaeRem2,238 chainCaeRem2,243 chainCaeRem2,255 chainCaeRem2,261 chainCaeRem2,284 chainCaeRem2,384 chainCb3,29 chainCb3,105 chainCb3,176 chainCb3,188 chainCb3,227 chainCb3,238 chainCb3,243 chainCb3,255 chainCb3,261 chainCb3,284 chainCb3,384 chainPriPac1,29 chainPriPac1,105 chainPriPac1,176 chainPriPac1,188 chainPriPac1,227 chainPriPac1,238 chainPriPac1,243 chainPriPac1,255 chainPriPac1,261 chainPriPac1,284 chainPriPac1,384 chainSelf,66 chainSelf,72 chainSelf,113 chainSelf,188 chainSelf,200 chainSelf,239 chainSelf,250 chainSelf,255 chainSelf,267 chainSelf,273 chainSelf,296 chainSelf,305 chainSelf,373 cons5way,50 cons5way,116 cons5way,157 cons5way,179 cons5way,224 cons5way,239 cons5way,276 cons5way,296 cons5way,337 cons5way,379 cons5way,447 cons5way,504 cons5way,522 cons5way,558 cons5way,619 cons5way,683 cons5way,691 cons5way,896 cons5way,978 cons5way,985 cons5way,1152 est,97 est,124 est,161 est,165 est,180 est,187 est,191 est,209 est,229 est,236 est,324 est,373 est,383 est,407 est,416 est,485 est,550 est,610 est,705 gc5Base,48 gold,92 intronEst,57 intronEst,172 intronEst,199 intronEst,236 intronEst,240 intronEst,255 intronEst,262 intronEst,266 intronEst,284 intronEst,304 intronEst,311 intronEst,399 intronEst,448 intronEst,458 intronEst,482 intronEst,491 intronEst,560 intronEst,625 intronEst,685 intronEst,783 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,270 mrna,319 mrna,329 mrna,344 mrna,422 multiz5way,51 multiz5way,117 multiz5way,158 multiz5way,180 multiz5way,225 multiz5way,240 multiz5way,277 multiz5way,297 multiz5way,338 multiz5way,380 multiz5way,448 multiz5way,505 multiz5way,523 multiz5way,559 multiz5way,620 multiz5way,684 multiz5way,692 multiz5way,897 multiz5way,979 multiz5way,986 multiz5way,1153 netCaePb1,143 netCaePb1,157 netCaePb1,241 netCaePb1,286 netCaePb1,298 netCaePb1,338 netCaePb1,361 netCaePb1,371 netCaeRem2,143 netCaeRem2,157 netCaeRem2,241 netCaeRem2,286 netCaeRem2,298 netCaeRem2,338 netCaeRem2,361 netCaeRem2,371 netCb3,143 netCb3,157 netCb3,241 netCb3,286 netCb3,298 netCb3,338 netCb3,361 netCb3,371 netPriPac1,143 netPriPac1,157 netPriPac1,241 netPriPac1,286 netPriPac1,298 netPriPac1,338 netPriPac1,361 netPriPac1,371 nucleosome,41 nucleosome,67 nucleosome,105 nucleosome,165 nucleosome,208 nucleosome,216 nucleosome,242 nucleosomeAdjustedCoverage,36 nucleosomeAdjustedCoverage,88 nucleosomeControlCoverage,58 nucleosomeControlCoverage,124 nucleosomeStringency,53 phastConsElements5way,75 phastConsElements5way,189 phastConsElements5way,229 phastConsElements5way,248 phastConsElements5way,327 refGene,50 refGene,130 refGene,163 refGene,199 refGene,206 refGene,224 refGene,256 rmsk,118 rmsk,226 rmsk,274 rmsk,286 rmsk,301 sangerGene,87 sangerPseudoGene,57 sangerRnaGene,82 sibTxGraph,63 sibTxGraph,78 sibTxGraph,112 sibTxGraph,173 sibTxGraph,244 sibTxGraph,251 sibTxGraph,259 simpleRepeat,81 tRNAs,44 tRNAs,66 tRNAs,127 tRNAs,170 tRNAs,219 tRNAs,251 transcriptome,115 transcriptome,122 transcriptome,178 transcriptome,239 transcriptome,253 transcriptome,266 transcriptome,328 transcriptome,335 transcriptome,343 windowmaskerSdust,47 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,182 xenoRefGene,208 together blastHg18KG,89 chainCaePb1,85 chainCaeRem2,85 chainCb3,85 chainPriPac1,85 chainSelf,93 tolerate chainCaePb1,52 chainCaeRem2,52 chainCb3,52 chainPriPac1,52 chainSelf,42 tonthat nucleosome,292 nucleosomeAdjustedCoverage,162 nucleosomeControlCoverage,181 nucleosomeDensity,131 nucleosomeStringency,104 tool blastHg18KG,147 blastHg18KG,169 est,747 intronEst,825 mrna,464 refGene,357 windowmaskerSdust,24 xenoRefGene,308 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools rmsk,296 top cons5way,640 multiz5way,641 netCaePb1,198 netCaeRem2,198 netCb3,198 netPriPac1,198 refGene,116 xenoRefGene,95 top-level netCaePb1,73 netCaePb1,93 netCaeRem2,73 netCaeRem2,93 netCb3,73 netCb3,93 netPriPac1,73 netPriPac1,93 total nucleosomeAdjustedCoverage,72 track 25mersRepeats,111 25mersRepeats,128 augustusGene,14 augustusGene,107 blastHg18KG,15 blastHg18KG,34 blastHg18KG,45 blastHg18KG,192 chainCaePb1,17 chainCaePb1,81 chainCaePb1,257 chainCaePb1,420 chainCaeRem2,17 chainCaeRem2,81 chainCaeRem2,257 chainCaeRem2,420 chainCb3,17 chainCb3,81 chainCb3,257 chainCb3,420 chainPriPac1,17 chainPriPac1,81 chainPriPac1,257 chainPriPac1,420 chainSelf,13 chainSelf,89 chainSelf,269 chainSelf,396 cons5way,11 cons5way,53 cons5way,203 cons5way,279 cons5way,527 cons5way,1083 cons5way,1123 est,14 est,51 est,116 est,141 est,153 est,368 est,613 est,695 gc5Base,15 gc5Base,39 gold,10 gold,79 intronEst,15 intronEst,123 intronEst,129 intronEst,191 intronEst,216 intronEst,228 intronEst,443 intronEst,688 intronEst,770 intronEst,773 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,314 mrna,412 multiz5way,12 multiz5way,54 multiz5way,204 multiz5way,280 multiz5way,528 multiz5way,1084 multiz5way,1124 netCaePb1,17 netCaeRem2,17 netCb3,17 netPriPac1,17 nucleosome,14 nucleosome,241 nucleosome,259 nucleosome,276 nucleosomeAdjustedCoverage,99 nucleosomeAdjustedCoverage,129 nucleosomeAdjustedCoverage,146 nucleosomeControlCoverage,148 nucleosomeControlCoverage,165 nucleosomeDensity,98 nucleosomeDensity,115 nucleosomeStringency,71 nucleosomeStringency,88 phastConsElements5way,12 phastConsElements5way,270 phastConsElements5way,321 phastConsElements5way,333 refGene,13 refGene,35 refGene,69 refGene,107 refGene,119 refGene,135 refGene,145 refGene,189 refGene,218 refGene,330 rmsk,11 rmsk,52 rmsk,115 rmsk,304 sangerGene,14 sangerGene,33 sangerPseudoGene,14 sangerPseudoGene,32 sangerRnaGene,14 sangerRnaGene,32 sibTxGraph,16 sibTxGraph,41 sibTxGraph,67 sibTxGraph,197 simpleRepeat,13 tRNAs,15 transcriptome,12 transcriptome,51 transcriptome,69 transcriptome,105 transcriptome,134 transcriptome,281 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,282 tracks augustusGene,41 cons5way,775 est,59 est,413 intronEst,137 intronEst,488 mrna,40 mrna,352 multiz5way,776 netCaePb1,266 netCaeRem2,266 netCb3,266 netPriPac1,266 refGene,77 transcriptome,79 xenoRefGene,56 trackspecies cons5way,787 multiz5way,788 traditional chainCaePb1,44 chainCaeRem2,44 chainCb3,44 chainPriPac1,44 chainSelf,33 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed est,44 est,427 intronEst,55 intronEst,502 transcript est,522 intronEst,597 transcriptase est,478 intronEst,553 transcription est,101 est,461 est,508 est,530 intronEst,176 intronEst,536 intronEst,583 intronEst,605 transcriptional tRNAs,497 transcriptome sibTxGraph,91 transcriptome,1 transcriptome,3 transcriptome,11 transcriptome,158 transcriptome,163 transcriptome,280 transcripts augustusGene,124 refGene,386 sibTxGraph,25 sibTxGraph,35 transcriptome,57 transcriptome,152 transcriptome,257 xenoRefGene,379 transfer tRNAs,3 tRNAs,374 tRNAs,451 transformed phastConsElements5way,272 phastConsElements5way,284 translate cons5way,692 multiz5way,693 translated cons5way,763 multiz5way,764 translation augustusGene,57 cons5way,602 cons5way,627 cons5way,635 cons5way,653 cons5way,665 cons5way,672 cons5way,710 cons5way,712 cons5way,739 cons5way,770 cons5way,780 multiz5way,603 multiz5way,628 multiz5way,636 multiz5way,654 multiz5way,666 multiz5way,673 multiz5way,711 multiz5way,713 multiz5way,740 multiz5way,771 multiz5way,781 tRNAs,159 tRNAs,195 transposon cons5way,496 multiz5way,497 transposons chainCaePb1,289 chainCaePb1,318 chainCaeRem2,289 chainCaeRem2,318 chainCb3,289 chainCb3,318 chainPriPac1,289 chainPriPac1,318 netCaePb1,396 netCaeRem2,396 netCb3,396 netPriPac1,396 traversal transcriptome,259 traversed transcriptome,252 treat tRNAs,279 treats cons5way,1044 multiz5way,1045 tree cons5way,846 cons5way,1133 cons5way,1349 multiz5way,847 multiz5way,1134 multiz5way,1350 phastConsElements5way,156 trends rmsk,324 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 trimming netCaePb1,294 netCaeRem2,294 netCb3,294 netPriPac1,294 trivial chainSelf,55 chainSelf,309 trna rmsk,161 sangerRnaGene,62 tRNAs,1 tRNAs,17 tRNAs,50 tRNAs,98 tRNAs,109 tRNAs,132 tRNAs,140 tRNAs,146 tRNAs,173 tRNAs,275 tRNAs,285 tRNAs,313 tRNAs,342 tRNAs,423 tRNAs,484 trna-derived tRNAs,149 tRNAs,301 trnas tRNAs,84 tRNAs,161 tRNAs,196 tRNAs,225 trnascan tRNAs,31 trnascan-se tRNAs,8 tRNAs,22 tRNAs,24 tRNAs,115 tRNAs,330 tRNAs,444 trnascan-se-1.23 sangerRnaGene,66 tromer transcriptome,2 true augustusGene,132 tRNAs,83 windowmaskerSdust,60 windowmaskerSdust,69 turn chainCaePb1,244 chainCaeRem2,244 chainCb3,244 chainPriPac1,244 chainSelf,256 refGene,181 xenoRefGene,133 two netCaePb1,402 netCaeRem2,402 netCb3,402 netPriPac1,402 phastConsElements5way,142 two-column nucleosomeAdjustedCoverage,120 two-state cons5way,912 multiz5way,913 phastConsElements5way,127 type cons5way,869 est,169 est,199 gold,71 intronEst,244 intronEst,274 mrna,115 mrna,145 multiz5way,870 phastConsElements5way,48 types augustusGene,89 est,248 intronEst,323 mrna,194 netCaePb1,194 netCaeRem2,194 netCb3,194 netPriPac1,194 typical tRNAs,311 typically est,33 est,430 gc5Base,33 intronEst,44 intronEst,505 u chainCaePb1,553 chainCaeRem2,553 chainCb3,553 chainPriPac1,553 chainSelf,518 cons5way,1285 multiz5way,1286 netCaePb1,491 netCaeRem2,491 netCb3,491 netPriPac1,491 phastConsElements5way,451 ucsc 25mersRepeats,135 blastHg18KG,32 blastHg18KG,43 cons5way,1087 cons5way,1115 cons5way,1121 cons5way,1130 est,699 intronEst,777 mrna,416 multiz5way,1088 multiz5way,1116 multiz5way,1122 multiz5way,1131 nucleosome,283 nucleosomeAdjustedCoverage,153 nucleosomeControlCoverage,172 nucleosomeDensity,122 nucleosomeStringency,95 phastConsElements5way,337 phastConsElements5way,369 refGene,334 rmsk,211 tRNAs,340 xenoRefGene,286 unalignable cons5way,329 multiz5way,330 uncertainty cons5way,368 multiz5way,369 uncompressed nucleosomeAdjustedCoverage,113 under phastConsElements5way,252 phastConsElements5way,260 undergone refGene,90 xenoRefGene,69 underlying refGene,33 xenoRefGene,37 underneath netCaePb1,330 netCaeRem2,330 netCb3,330 netPriPac1,330 undesirably cons5way,1057 multiz5way,1058 ungapped netCaePb1,133 netCaeRem2,133 netCb3,133 netPriPac1,133 unique transcriptome,256 universal nucleosome,322 nucleosomeAdjustedCoverage,192 nucleosomeControlCoverage,211 nucleosomeDensity,161 nucleosomeStringency,134 university chainCaePb1,428 chainCaePb1,473 chainCaeRem2,428 chainCaeRem2,473 chainCb3,428 chainCb3,473 chainPriPac1,428 chainPriPac1,473 chainSelf,404 chainSelf,438 netCaePb1,416 netCaePb1,430 netCaeRem2,416 netCaeRem2,430 netCb3,416 netCb3,430 netPriPac1,416 netPriPac1,430 phastConsElements5way,376 unknown rmsk,173 unlike cons5way,1001 multiz5way,1002 unprocessed chainCaePb1,191 chainCaeRem2,191 chainCb3,191 chainPriPac1,191 chainSelf,203 est,573 intronEst,648 unsequenced chainCaePb1,148 chainCaeRem2,148 chainCb3,148 chainPriPac1,148 chainSelf,158 unspliced est,8 est,602 intronEst,117 intronEst,677 sibTxGraph,187 untranslated transcriptome,87 up blastHg18KG,67 rmsk,117 sibTxGraph,128 transcriptome,194 update est,726 intronEst,804 mrna,443 rmsk,82 rmsk,94 rmsk,307 rmsk,314 transcriptome,357 xenoRefGene,344 updated refGene,37 xenoRefGene,41 use cons5way,666 cons5way,701 cons5way,727 cons5way,735 est,166 gold,103 intronEst,241 mrna,112 multiz5way,667 multiz5way,702 multiz5way,728 multiz5way,736 tRNAs,357 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 blastHg18KG,188 chainCaePb1,397 chainCaeRem2,397 chainCb3,397 chainPriPac1,397 cons5way,49 cons5way,285 cons5way,659 cons5way,690 cons5way,998 est,123 est,264 est,323 est,541 gold,91 intronEst,198 intronEst,339 intronEst,398 intronEst,616 mrna,69 mrna,210 mrna,269 multiz5way,50 multiz5way,286 multiz5way,660 multiz5way,691 multiz5way,999 netCaePb1,50 netCaePb1,285 netCaePb1,337 netCaePb1,370 netCaeRem2,50 netCaeRem2,285 netCaeRem2,337 netCaeRem2,370 netCb3,50 netCb3,285 netCb3,337 netCb3,370 netPriPac1,50 netPriPac1,285 netPriPac1,337 netPriPac1,370 nucleosomeControlCoverage,57 nucleosomeControlCoverage,123 rmsk,213 rmsk,258 rmsk,300 useful microsat,20 netCaePb1,36 netCaePb1,167 netCaeRem2,36 netCaeRem2,167 netCb3,36 netCb3,167 netPriPac1,36 netPriPac1,167 user est,382 intronEst,457 mrna,328 users refGene,198 transcriptome,114 xenoRefGene,150 uses cons5way,771 cons5way,910 multiz5way,772 multiz5way,911 rmsk,79 tRNAs,30 using augustusGene,294 blastHg18KG,52 blastHg18KG,77 blastHg18KG,90 chainCaePb1,34 chainCaePb1,313 chainCaePb1,332 chainCaeRem2,34 chainCaeRem2,313 chainCaeRem2,332 chainCb3,34 chainCb3,313 chainCb3,332 chainPriPac1,34 chainPriPac1,313 chainPriPac1,332 chainSelf,23 chainSelf,307 chainSelf,323 cons5way,154 cons5way,756 cons5way,764 cons5way,824 cons5way,838 cons5way,1088 est,624 intronEst,699 microsat,90 mrna,364 multiz5way,155 multiz5way,757 multiz5way,765 multiz5way,825 multiz5way,839 multiz5way,1089 netCaePb1,259 netCaeRem2,259 netCb3,259 netPriPac1,259 nucleosomeDensity,42 nucleosomeDensity,81 phastConsElements5way,87 phastConsElements5way,104 phastConsElements5way,181 phastConsElements5way,285 phastConsElements5way,338 refGene,275 rmsk,15 rmsk,249 sibTxGraph,100 sibTxGraph,206 tRNAs,21 tRNAs,401 transcriptome,62 transcriptome,166 transcriptome,290 xenoRefGene,227 ustat windowmaskerSdust,66 usually est,40 intronEst,51 tRNAs,239 tRNAs,307 utilities blastHg18KG,187 v sangerGene,22 sangerPseudoGene,21 sangerRnaGene,21 v.1.23 tRNAs,23 v3.1 augustusGene,7 valid est,214 intronEst,289 mrna,160 validate refGene,201 transcriptome,117 xenoRefGene,153 valouev nucleosome,288 nucleosomeAdjustedCoverage,158 nucleosomeControlCoverage,177 nucleosomeDensity,127 nucleosomeStringency,100 value cons5way,927 est,274 intronEst,349 mrna,220 multiz5way,928 values cons5way,156 multiz5way,157 phastConsElements5way,276 variablestep nucleosomeAdjustedCoverage,121 variation 25mersRepeats,5 chainSelf,8 cons5way,1153 microsat,7 multiz5way,1154 rmsk,6 simpleRepeat,8 windowmaskerSdust,9 variety cons5way,176 gc5Base,45 multiz5way,177 vb chainCaePb1,511 chainCaeRem2,511 chainCb3,511 chainPriPac1,511 chainSelf,476 cons5way,1302 multiz5way,1303 phastConsElements5way,511 vector est,438 intronEst,513 version augustusGene,23 augustusGene,263 gap,29 gold,128 rmsk,58 versions augustusGene,279 rmsk,217 rmsk,233 vertebrate cons5way,1194 multiz5way,1195 phastConsElements5way,405 tRNAs,160 vertebrates augustusGene,209 vertex sibTxGraph,161 transcriptome,227 vertical cons5way,413 multiz5way,414 very est,645 intronEst,720 via refGene,126 view cons5way,225 est,210 intronEst,285 mrna,156 multiz5way,226 netCaePb1,144 netCaeRem2,144 netCb3,144 netPriPac1,144 sibTxGraph,64 viewed est,606 intronEst,681 visit refGene,40 vital-it sibTxGraph,202 transcriptome,286 w blastHg18KG,158 blastHg18KG,160 chainCaePb1,513 chainCaePb1,533 chainCaePb1,606 chainCaeRem2,513 chainCaeRem2,533 chainCaeRem2,606 chainCb3,513 chainCb3,533 chainCb3,606 chainPriPac1,513 chainPriPac1,533 chainPriPac1,606 chainSelf,478 chainSelf,498 chainSelf,546 cons5way,1265 cons5way,1304 cons5way,1332 multiz5way,1266 multiz5way,1305 multiz5way,1333 netCaePb1,471 netCaePb1,519 netCaeRem2,471 netCaeRem2,519 netCb3,471 netCb3,519 netPriPac1,471 netPriPac1,519 phastConsElements5way,431 phastConsElements5way,513 phastConsElements5way,541 waack augustusGene,318 was 25mersRepeats,41 augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 blastHg18KG,180 chainCaePb1,378 chainCaePb1,396 chainCaePb1,423 chainCaePb1,469 chainCaeRem2,378 chainCaeRem2,396 chainCaeRem2,423 chainCaeRem2,469 chainCb3,378 chainCb3,396 chainCb3,423 chainCb3,469 chainPriPac1,378 chainPriPac1,396 chainPriPac1,423 chainPriPac1,469 chainSelf,303 chainSelf,367 chainSelf,399 chainSelf,434 cons5way,941 cons5way,997 cons5way,1084 est,667 est,696 gap,41 gold,140 intronEst,742 intronEst,774 microsat,108 mrna,383 mrna,413 multiz5way,942 multiz5way,998 multiz5way,1085 netCaePb1,283 netCaePb1,328 netCaePb1,336 netCaePb1,356 netCaePb1,368 netCaePb1,393 netCaePb1,425 netCaeRem2,283 netCaeRem2,328 netCaeRem2,336 netCaeRem2,356 netCaeRem2,368 netCaeRem2,393 netCaeRem2,425 netCb3,283 netCb3,328 netCb3,336 netCb3,356 netCb3,368 netCb3,393 netCb3,425 netPriPac1,283 netPriPac1,328 netPriPac1,336 netPriPac1,356 netPriPac1,368 netPriPac1,393 netPriPac1,425 nucleosome,18 phastConsElements5way,97 phastConsElements5way,334 refGene,302 refGene,331 rmsk,12 sibTxGraph,198 simpleRepeat,68 transcriptome,282 windowmaskerSdust,52 windowmaskerSdust,78 xenoRefGene,254 xenoRefGene,283 way cons5way,889 multiz5way,890 phastConsElements5way,68 ways cons5way,178 cons5way,1073 gc5Base,47 multiz5way,179 multiz5way,1074 we chainCaePb1,446 chainCaeRem2,446 chainCb3,446 chainPriPac1,446 cons5way,1067 multiz5way,1068 web sibTxGraph,92 transcriptome,159 webb chainCaePb1,437 chainCaePb1,485 chainCaeRem2,437 chainCaeRem2,485 chainCb3,437 chainCb3,485 chainPriPac1,437 chainPriPac1,485 chainSelf,413 chainSelf,450 cons5way,1097 multiz5way,1098 netCaePb1,439 netCaeRem2,439 netCb3,439 netPriPac1,439 phastConsElements5way,351 weekly refGene,38 xenoRefGene,42 weight tRNAs,493 well augustusGene,78 est,510 est,533 intronEst,585 intronEst,608 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 blastHg18KG,46 blastHg18KG,70 blastHg18KG,87 blastHg18KG,114 blastHg18KG,136 blastHg18KG,193 chainCaePb1,301 chainCaePb1,309 chainCaePb1,319 chainCaePb1,327 chainCaePb1,339 chainCaePb1,411 chainCaePb1,499 chainCaeRem2,301 chainCaeRem2,309 chainCaeRem2,319 chainCaeRem2,327 chainCaeRem2,339 chainCaeRem2,411 chainCaeRem2,499 chainCb3,301 chainCb3,309 chainCb3,319 chainCb3,327 chainCb3,339 chainCb3,411 chainCb3,499 chainPriPac1,301 chainPriPac1,309 chainPriPac1,319 chainPriPac1,327 chainPriPac1,339 chainPriPac1,411 chainPriPac1,499 chainSelf,311 chainSelf,318 chainSelf,330 chainSelf,387 chainSelf,422 chainSelf,464 cons5way,48 cons5way,819 cons5way,834 cons5way,851 est,560 est,619 est,691 gc5Base,79 intronEst,635 intronEst,694 mrna,359 mrna,407 multiz5way,49 multiz5way,820 multiz5way,835 multiz5way,852 netCaePb1,254 netCaePb1,412 netCaePb1,455 netCaeRem2,254 netCaeRem2,412 netCaeRem2,455 netCb3,254 netCb3,412 netCb3,455 netPriPac1,254 netPriPac1,412 netPriPac1,455 nucleosome,76 nucleosome,136 nucleosome,201 phastConsElements5way,82 phastConsElements5way,110 refGene,268 refGene,285 refGene,326 sibTxGraph,98 tRNAs,345 xenoRefGene,220 xenoRefGene,237 xenoRefGene,278 what tRNAs,112 wheeler est,723 intronEst,801 mrna,440 transcriptome,354 when augustusGene,188 augustusGene,238 chainSelf,59 cons5way,520 est,146 est,156 est,652 gold,41 intronEst,35 intronEst,221 intronEst,231 intronEst,727 mrna,92 mrna,102 mrna,368 multiz5way,521 netCaePb1,95 netCaeRem2,95 netCb3,95 netPriPac1,95 phastConsElements5way,319 refGene,287 sibTxGraph,65 tRNAs,355 xenoRefGene,239 where chainCaePb1,155 chainCaeRem2,155 chainCb3,155 chainPriPac1,155 chainSelf,167 cons5way,102 cons5way,719 multiz5way,103 multiz5way,720 nucleosomeAdjustedCoverage,45 whether netCaePb1,352 netCaeRem2,352 netCb3,352 netPriPac1,352 tRNAs,138 which augustusGene,159 augustusGene,227 chainCaePb1,234 chainCaePb1,343 chainCaeRem2,234 chainCaeRem2,343 chainCb3,234 chainCb3,343 chainPriPac1,234 chainPriPac1,343 chainSelf,246 chainSelf,334 cons5way,1050 est,106 est,233 est,467 est,492 est,639 intronEst,181 intronEst,308 intronEst,542 intronEst,567 intronEst,714 mrna,179 multiz5way,1051 netCaePb1,317 netCaeRem2,317 netCb3,317 netPriPac1,317 rmsk,21 rmsk,64 rmsk,129 rmsk,142 rmsk,167 simpleRepeat,27 while chainCaePb1,179 chainCaeRem2,179 chainCb3,179 chainPriPac1,179 chainSelf,191 transcriptome,95 who sibTxGraph,255 transcriptome,339 whole netCaePb1,152 netCaeRem2,152 netCb3,152 netPriPac1,152 wiggle cons5way,99 cons5way,136 cons5way,170 cons5way,1122 multiz5way,100 multiz5way,137 multiz5way,171 multiz5way,1123 nucleosomeAdjustedCoverage,122 wildcards est,260 intronEst,335 mrna,206 will est,293 est,311 est,340 est,357 intronEst,368 intronEst,386 intronEst,415 intronEst,432 mrna,239 mrna,257 mrna,286 mrna,303 window 25mersRepeats,37 25mersRepeats,58 cons5way,1012 multiz5way,1013 nucleosomeStringency,48 nucleosomeStringency,65 window-based chainCaePb1,577 chainCaeRem2,577 chainCb3,577 chainPriPac1,577 windowmaskerSdust,101 windowmasker chainCaePb1,452 chainCaePb1,576 chainCaeRem2,452 chainCaeRem2,576 chainCb3,452 chainCb3,576 chainPriPac1,452 chainPriPac1,576 windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5Base,7 gc5Base,28 wish est,235 intronEst,310 mrna,181 refGene,255 xenoRefGene,207 with 25mersRepeats,102 augustusGene,127 augustusGene,322 blastHg18KG,48 blastHg18KG,72 chainCaePb1,170 chainCaePb1,181 chainCaePb1,311 chainCaePb1,439 chainCaePb1,451 chainCaePb1,482 chainCaePb1,609 chainCaeRem2,170 chainCaeRem2,181 chainCaeRem2,311 chainCaeRem2,439 chainCaeRem2,451 chainCaeRem2,482 chainCaeRem2,609 chainCb3,170 chainCb3,181 chainCb3,311 chainCb3,439 chainCb3,451 chainCb3,482 chainCb3,609 chainPriPac1,170 chainPriPac1,181 chainPriPac1,311 chainPriPac1,439 chainPriPac1,451 chainPriPac1,482 chainPriPac1,609 chainSelf,21 chainSelf,182 chainSelf,193 chainSelf,415 chainSelf,447 chainSelf,549 cons5way,914 cons5way,1335 est,105 est,469 est,607 est,644 est,687 gc5Base,35 intronEst,180 intronEst,544 intronEst,682 intronEst,719 intronEst,762 microsat,69 microsat,76 mrna,403 multiz5way,915 multiz5way,1336 netCaePb1,271 netCaePb1,395 netCaePb1,441 netCaePb1,522 netCaeRem2,271 netCaeRem2,395 netCaeRem2,441 netCaeRem2,522 netCb3,271 netCb3,395 netCb3,441 netCb3,522 netPriPac1,271 netPriPac1,395 netPriPac1,441 netPriPac1,522 nucleosome,48 nucleosomeAdjustedCoverage,83 nucleosomeControlCoverage,37 nucleosomeControlCoverage,103 phastConsElements5way,31 phastConsElements5way,120 phastConsElements5way,129 phastConsElements5way,158 phastConsElements5way,268 phastConsElements5way,491 phastConsElements5way,544 refGene,278 refGene,322 rmsk,195 sibTxGraph,115 sibTxGraph,132 sibTxGraph,214 simpleRepeat,52 tRNAs,7 tRNAs,58 tRNAs,85 tRNAs,119 tRNAs,162 tRNAs,177 tRNAs,197 tRNAs,242 transcriptome,181 transcriptome,198 transcriptome,298 windowmaskerSdust,54 xenoRefGene,230 xenoRefGene,274 within chainSelf,82 cons5way,483 est,139 est,520 est,676 intronEst,214 intronEst,595 intronEst,751 mrna,85 mrna,392 multiz5way,484 refGene,105 refGene,311 simpleRepeat,37 xenoRefGene,84 xenoRefGene,263 without cons5way,664 multiz5way,665 wj chainCaePb1,527 chainCaePb1,594 chainCaeRem2,527 chainCaeRem2,594 chainCb3,527 chainCb3,594 chainPriPac1,527 chainPriPac1,594 chainSelf,492 chainSelf,534 cons5way,1259 cons5way,1320 est,742 intronEst,820 mrna,459 multiz5way,1260 multiz5way,1321 netCaePb1,465 netCaePb1,507 netCaeRem2,465 netCaeRem2,507 netCb3,465 netCb3,507 netPriPac1,465 netPriPac1,507 phastConsElements5way,425 phastConsElements5way,468 phastConsElements5way,529 refGene,352 xenoRefGene,304 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 worldwide est,713 intronEst,791 mrna,430 refGene,342 sibTxGraph,254 transcriptome,338 xenoRefGene,294 worm cons5way,788 cons5way,1196 multiz5way,789 multiz5way,1197 phastConsElements5way,407 wormbase gap,33 gold,132 sangerGene,1 sangerGene,3 sangerGene,12 sangerGene,21 sangerGene,85 sangerGene,89 sangerPseudoGene,1 sangerPseudoGene,3 sangerPseudoGene,12 sangerPseudoGene,20 sangerPseudoGene,55 sangerPseudoGene,59 sangerRnaGene,1 sangerRnaGene,3 sangerRnaGene,12 sangerRnaGene,20 sangerRnaGene,80 sangerRnaGene,84 wormbook cons5way,1362 multiz5way,1363 written blastHg18KG,181 blastHg18KG,194 microsat,109 simpleRepeat,69 ws170 25mersRepeats,14 cons5way,56 cons5way,59 gap,14 gap,30 gold,60 gold,129 multiz5way,57 multiz5way,60 sangerGene,23 sangerPseudoGene,22 sangerRnaGene,22 wugsc chainCaePb1,8 chainCaePb1,26 chainCaeRem2,8 chainCaeRem2,26 chainCb3,8 chainCb3,26 chainPriPac1,8 chainPriPac1,26 netCaePb1,8 netCaePb1,59 netCaeRem2,8 netCaeRem2,59 netCb3,8 netCb3,59 netPriPac1,8 netPriPac1,59 x phastConsElements5way,294 yang cons5way,903 cons5way,1234 multiz5way,904 multiz5way,1235 yap chainCaePb1,510 chainCaeRem2,510 chainCb3,510 chainPriPac1,510 chainSelf,475 cons5way,1301 multiz5way,1302 phastConsElements5way,510 yeast cons5way,1198 multiz5way,1199 phastConsElements5way,409 yellow cons5way,357 multiz5way,358 york cons5way,1229 multiz5way,1230 you est,234 intronEst,309 mrna,180 refGene,254 xenoRefGene,206 your nucleosome,234 z chainCaePb1,598 chainCaeRem2,598 chainCb3,598 chainPriPac1,598 chainSelf,538 cons5way,1235 cons5way,1324 multiz5way,1236 multiz5way,1325 netCaePb1,511 netCaeRem2,511 netCb3,511 netPriPac1,511 phastConsElements5way,533 zebrafish augustusGene,202 augustusGene,278 zeng nucleosome,300 nucleosomeAdjustedCoverage,170 nucleosomeControlCoverage,189 nucleosomeDensity,139 nucleosomeStringency,112 zhang chainCaePb1,435 chainCaePb1,597 chainCaeRem2,435 chainCaeRem2,597 chainCb3,435 chainCb3,597 chainPriPac1,435 chainPriPac1,597 chainSelf,411 chainSelf,537 cons5way,1323 multiz5way,1324 netCaePb1,437 netCaePb1,510 netCaeRem2,437 netCaeRem2,510 netCb3,437 netCb3,510 netPriPac1,437 netPriPac1,510 phastConsElements5way,532 zheng chainCaePb1,434 chainCaeRem2,434 chainCb3,434 chainPriPac1,434 chainSelf,410 netCaePb1,436 netCaeRem2,436 netCb3,436 netPriPac1,436 zone tRNAs,208 zoom cons5way,235 multiz5way,236 zoomed-in cons5way,521 multiz5way,522