0 nestedRepeats,237 transMapEnsemblV5,672 transMapEstV5,641 transMapRefSeqV5,641 transMapRnaV5,641 transMapV5,747 uniprot,1822 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1 refSeqComposite,1274 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.5 augustusGene,138 mrna,425 transMapEnsemblV5,226 transMapEnsemblV5,361 transMapEstV5,195 transMapEstV5,330 transMapRefSeqV5,195 transMapRefSeqV5,330 transMapRnaV5,195 transMapRnaV5,330 transMapV5,301 transMapV5,436 xenoRefGene,264 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 000 transMapV5,110 1 HLTOGAannotvHg38v1,239 augustusGene,310 chainBosTau7,394 chainBosTau7,525 chainBosTau7,717 chainBosTau7,1116 chainHg19,391 chainHg19,522 chainHg19,714 chainHg19,1113 chainMm10,391 chainMm10,522 chainMm10,714 chainMm10,1113 chainMonDom5,391 chainMonDom5,522 chainMonDom5,714 chainMonDom5,1113 chainNetBosTau7,397 chainNetBosTau7,528 chainNetBosTau7,720 chainNetBosTau7,1119 chainNetHg19,394 chainNetHg19,525 chainNetHg19,717 chainNetHg19,1116 chainNetMm10,394 chainNetMm10,525 chainNetMm10,717 chainNetMm10,1116 chainNetMonDom5,394 chainNetMonDom5,525 chainNetMonDom5,717 chainNetMonDom5,1116 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 genscan,227 mrna,509 netBosTau7,394 netBosTau7,525 netBosTau7,717 netBosTau7,1116 netHg19,391 netHg19,522 netHg19,714 netHg19,1113 netMm10,391 netMm10,522 netMm10,714 netMm10,1113 netMonDom5,391 netMonDom5,522 netMonDom5,714 netMonDom5,1113 refSeqComposite,1817 transMapEnsemblV5,781 transMapEstV5,750 transMapRefSeqV5,750 transMapRnaV5,750 transMapV5,856 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 xenoRefGene,387 1.0 transMapEnsemblV5,369 transMapEstV5,338 transMapRefSeqV5,338 transMapRnaV5,338 transMapV5,444 10 uniprot,1928 100 augustusGene,134 chainBosTau7,1084 chainHg19,1081 chainMm10,1081 chainMonDom5,1081 chainNetBosTau7,1087 chainNetHg19,1084 chainNetMm10,1084 chainNetMonDom5,1084 gap,137 microsat,70 nestedRepeats,230 netBosTau7,1084 netHg19,1081 netMm10,1081 netMonDom5,1081 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000 chainBosTau7,756 chainHg19,753 chainMm10,753 chainNetBosTau7,759 chainNetHg19,756 chainNetMm10,756 nestedRepeats,238 netBosTau7,756 netHg19,753 netMm10,753 1000-2000 augustusGene,161 1000000 transMapEnsemblV5,674 transMapEstV5,643 transMapRefSeqV5,643 transMapRnaV5,643 transMapV5,749 uniprot,1824 103-7 chainBosTau7,1117 chainHg19,1114 chainMm10,1114 chainMonDom5,1114 chainNetBosTau7,1120 chainNetHg19,1117 chainNetMm10,1117 chainNetMonDom5,1117 netBosTau7,1117 netHg19,1114 netMm10,1114 netMonDom5,1114 10607616 nestedRepeats,394 rmsk,417 10973072 nestedRepeats,361 rmsk,384 11 chainBosTau7,713 chainBosTau7,720 chainHg19,710 chainHg19,717 chainMm10,710 chainMm10,717 chainMonDom5,710 chainMonDom5,717 chainNetBosTau7,716 chainNetBosTau7,723 chainNetHg19,713 chainNetHg19,720 chainNetMm10,713 chainNetMm10,720 chainNetMonDom5,713 chainNetMonDom5,720 netBosTau7,713 netBosTau7,720 netHg19,710 netHg19,717 netMm10,710 netMm10,717 netMonDom5,710 netMonDom5,717 1100 chainMonDom5,731 chainMonDom5,743 chainNetMonDom5,734 chainNetMonDom5,746 netMonDom5,731 netMonDom5,743 111 chainBosTau7,715 chainBosTau7,721 chainHg19,712 chainHg19,718 chainMm10,712 chainMm10,718 chainMonDom5,712 chainMonDom5,718 chainNetBosTau7,718 chainNetBosTau7,724 chainNetHg19,715 chainNetHg19,721 chainNetMm10,715 chainNetMm10,721 chainNetMonDom5,715 chainNetMonDom5,721 netBosTau7,715 netBosTau7,721 netHg19,712 netHg19,718 netMm10,712 netMm10,718 netMonDom5,712 netMonDom5,718 11484-9 chainBosTau7,1086 chainHg19,1083 chainMm10,1083 chainMonDom5,1083 chainNetBosTau7,1089 chainNetHg19,1086 chainNetMm10,1086 chainNetMonDom5,1086 netBosTau7,1086 netHg19,1083 netMm10,1083 netMonDom5,1083 115-26 chainBosTau7,1048 chainHg19,1045 chainMm10,1045 chainMonDom5,1045 chainNetBosTau7,1051 chainNetHg19,1048 chainNetMm10,1048 chainNetMonDom5,1048 netBosTau7,1048 netHg19,1045 netMm10,1045 netMonDom5,1045 117900 chainBosTau7,737 chainBosTau7,749 chainHg19,734 chainHg19,746 chainMm10,734 chainMm10,746 chainNetBosTau7,740 chainNetBosTau7,752 chainNetHg19,737 chainNetHg19,749 chainNetMm10,737 chainNetMm10,749 netBosTau7,737 netBosTau7,749 netHg19,734 netHg19,746 netMm10,734 netMm10,746 118300 chainBosTau7,761 chainHg19,758 chainMm10,758 chainNetBosTau7,764 chainNetHg19,761 chainNetMm10,761 netBosTau7,761 netHg19,758 netMm10,758 11928468 chainBosTau7,1050 chainHg19,1047 chainMm10,1047 chainMonDom5,1047 chainNetBosTau7,1053 chainNetHg19,1050 chainNetMm10,1050 chainNetMonDom5,1050 netBosTau7,1050 netHg19,1047 netMm10,1047 netMonDom5,1047 11932250 mrna,533 refSeqComposite,1747 xenoRefGene,317 12 mrna,529 refSeqComposite,1743 transMapEnsemblV5,751 transMapEnsemblV5,817 transMapEstV5,720 transMapEstV5,786 transMapRefSeqV5,720 transMapRefSeqV5,786 transMapRnaV5,720 transMapRnaV5,786 transMapV5,826 transMapV5,892 xenoRefGene,313 12111 chainBosTau7,723 chainHg19,720 chainMm10,720 chainMonDom5,720 chainNetBosTau7,726 chainNetHg19,723 chainNetMm10,723 chainNetMonDom5,723 netBosTau7,723 netHg19,720 netMm10,720 netMonDom5,720 12529312 chainBosTau7,1119 chainHg19,1116 chainMm10,1116 chainMonDom5,1116 chainNetBosTau7,1122 chainNetHg19,1119 chainNetMm10,1119 chainNetMonDom5,1119 netBosTau7,1119 netHg19,1116 netMm10,1116 netMonDom5,1116 127-163 genscan,206 13 chainBosTau7,1115 chainHg19,1112 chainMm10,1112 chainMonDom5,1112 chainNetBosTau7,1118 chainNetHg19,1115 chainNetMm10,1115 chainNetMonDom5,1115 netBosTau7,1115 netHg19,1112 netMm10,1112 netMonDom5,1112 1300 chainBosTau7,757 chainHg19,754 chainMm10,754 chainNetBosTau7,760 chainNetHg19,757 chainNetMm10,757 netBosTau7,757 netHg19,754 netMm10,754 134-41 windowmaskerSdust,112 1400 chainMonDom5,755 chainNetMonDom5,758 netMonDom5,755 14500911 chainBosTau7,1088 chainHg19,1085 chainMm10,1085 chainMonDom5,1085 chainNetBosTau7,1091 chainNetHg19,1088 chainNetMm10,1088 chainNetMonDom5,1088 netBosTau7,1088 netHg19,1085 netMm10,1085 netMonDom5,1085 14534192 augustusGene,340 14681350 mrna,515 15 microsat,30 microsat,79 microsat,130 refSeqComposite,1246 simpleRepeat,90 windowmaskerSdust,109 xenoRefGene,236 15108278 uniprot,2051 152111 chainBosTau7,726 chainHg19,723 chainMm10,723 chainMonDom5,723 chainNetBosTau7,729 chainNetHg19,726 chainNetMm10,726 chainNetMonDom5,726 netBosTau7,726 netHg19,723 netMm10,723 netMonDom5,723 15600 chainMonDom5,734 chainMonDom5,746 chainNetMonDom5,737 chainNetMonDom5,749 netMonDom5,734 netMonDom5,746 15608248 refSeqComposite,1823 xenoRefGene,393 16 nestedRepeats,357 rmsk,380 16000 chainMonDom5,758 chainNetMonDom5,761 netMonDom5,758 16287941 windowmaskerSdust,114 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 transMapEnsemblV5,750 transMapEstV5,719 transMapRefSeqV5,719 transMapRnaV5,719 transMapV5,825 1763-73 transMapEnsemblV5,752 transMapEstV5,721 transMapRefSeqV5,721 transMapRnaV5,721 transMapV5,827 17989246 transMapEnsemblV5,754 transMapEstV5,723 transMapRefSeqV5,723 transMapRnaV5,723 transMapV5,829 18085818 transMapEnsemblV5,820 transMapEstV5,789 transMapRefSeqV5,789 transMapRnaV5,789 transMapV5,895 18218656 augustusGene,315 transMapEnsemblV5,786 transMapEstV5,755 transMapRefSeqV5,755 transMapRnaV5,755 transMapV5,861 19 augustusGene,335 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 1996 nestedRepeats,410 rmsk,433 1996-2010 nestedRepeats,334 rmsk,357 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 nestedRepeats,388 rmsk,411 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 chainBosTau7,428 chainBosTau7,433 chainBosTau7,718 chainHg19,425 chainHg19,430 chainHg19,715 chainMm10,425 chainMm10,430 chainMm10,715 chainMonDom5,425 chainMonDom5,430 chainMonDom5,715 chainNetBosTau7,431 chainNetBosTau7,436 chainNetBosTau7,721 chainNetHg19,428 chainNetHg19,433 chainNetHg19,718 chainNetMm10,428 chainNetMm10,433 chainNetMm10,718 chainNetMonDom5,428 chainNetMonDom5,433 chainNetMonDom5,718 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 microsat,66 microsat,132 netBosTau7,428 netBosTau7,433 netBosTau7,718 netHg19,425 netHg19,430 netHg19,715 netMm10,425 netMm10,430 netMm10,715 netMonDom5,425 netMonDom5,430 netMonDom5,715 simpleRepeat,92 uniprot,1121 uniprot,1331 windowmaskerSdust,111 2-3 uniprot,1572 2.0 HLTOGAannotvHg38v1,103 20 chainBosTau7,1085 chainHg19,1082 chainMm10,1082 chainMonDom5,1082 chainNetBosTau7,1088 chainNetHg19,1085 chainNetMm10,1085 chainNetMonDom5,1085 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 netBosTau7,1085 netHg19,1082 netMm10,1082 netMonDom5,1082 transMapEnsemblV5,377 transMapEstV5,346 transMapRefSeqV5,346 transMapRnaV5,346 transMapV5,452 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 nestedRepeats,63 nestedRepeats,355 rmsk,99 rmsk,378 2002 chainBosTau7,1047 chainHg19,1044 chainMm10,1044 chainMonDom5,1044 chainNetBosTau7,1050 chainNetHg19,1047 chainNetMm10,1047 chainNetMonDom5,1047 mrna,527 netBosTau7,1047 netHg19,1044 netMm10,1044 netMonDom5,1044 refSeqComposite,1741 xenoRefGene,311 2003 augustusGene,333 chainBosTau7,1081 chainBosTau7,1113 chainHg19,1078 chainHg19,1110 chainMm10,1078 chainMm10,1110 chainMonDom5,1078 chainMonDom5,1110 chainNetBosTau7,1084 chainNetBosTau7,1116 chainNetHg19,1081 chainNetHg19,1113 chainNetMm10,1081 chainNetMm10,1113 chainNetMonDom5,1081 chainNetMonDom5,1113 netBosTau7,1081 netBosTau7,1113 netHg19,1078 netHg19,1110 netMm10,1078 netMm10,1110 netMonDom5,1078 netMonDom5,1110 2004 mrna,507 uniprot,2045 2005 refSeqComposite,1815 xenoRefGene,385 2006 chainMonDom5,5 chainMonDom5,67 chainMonDom5,307 chainNetMonDom5,6 chainNetMonDom5,70 chainNetMonDom5,310 chainNetMonDom5Viewchain,4 chainNetMonDom5Viewnet,4 netMonDom5,5 netMonDom5,67 netMonDom5,307 windowmaskerSdust,107 2007 chainBosTau7,1020 chainHg19,1017 chainMm10,1017 chainMonDom5,1017 chainNetBosTau7,1023 chainNetHg19,1020 chainNetMm10,1020 chainNetMonDom5,1020 netBosTau7,1020 netHg19,1017 netMm10,1017 netMonDom5,1017 transMapEnsemblV5,748 transMapEnsemblV5,814 transMapEstV5,717 transMapEstV5,783 transMapRefSeqV5,717 transMapRefSeqV5,783 transMapRnaV5,717 transMapRnaV5,783 transMapV5,823 transMapV5,889 2008 augustusGene,308 transMapEnsemblV5,779 transMapEstV5,748 transMapRefSeqV5,748 transMapRnaV5,748 transMapV5,854 2009 chainHg19,5 chainHg19,67 chainHg19,307 chainNetHg19,6 chainNetHg19,70 chainNetHg19,310 chainNetHg19Viewchain,4 chainNetHg19Viewnet,4 netHg19,5 netHg19,67 netHg19,307 2011 chainBosTau7,5 chainBosTau7,68 chainBosTau7,309 chainMm10,5 chainMm10,67 chainMm10,307 chainNetBosTau7,6 chainNetBosTau7,71 chainNetBosTau7,312 chainNetBosTau7Viewchain,4 chainNetBosTau7Viewnet,4 chainNetMm10,6 chainNetMm10,70 chainNetMm10,310 chainNetMm10Viewchain,4 chainNetMm10Viewnet,4 netBosTau7,5 netBosTau7,68 netBosTau7,309 netMm10,5 netMm10,67 netMm10,307 2012 gap,16 gold,18 uniprot,2000 2013 mrna,482 2014 refSeqComposite,1782 xenoRefGene,352 2022_03 uniprot,1911 2023 HLTOGAannotvHg38v1,365 uniprot,1191 2111 chainBosTau7,722 chainHg19,719 chainMm10,719 chainMonDom5,719 chainNetBosTau7,725 chainNetHg19,722 chainNetMm10,722 chainNetMonDom5,722 netBosTau7,722 netHg19,719 netMm10,719 netMonDom5,719 217900 chainBosTau7,738 chainBosTau7,750 chainHg19,735 chainHg19,747 chainMm10,735 chainMm10,747 chainNetBosTau7,741 chainNetBosTau7,753 chainNetHg19,738 chainNetHg19,750 chainNetMm10,738 chainNetMm10,750 netBosTau7,738 netBosTau7,750 netHg19,735 netHg19,747 netMm10,735 netMm10,747 218300 chainBosTau7,762 chainHg19,759 chainMm10,759 chainNetBosTau7,765 chainNetHg19,762 chainNetMm10,762 netBosTau7,762 netHg19,759 netMm10,759 22 windowmaskerSdust,110 22102590 uniprot,2007 225 transMapEnsemblV5,719 transMapEstV5,688 transMapRefSeqV5,688 transMapRnaV5,688 transMapV5,794 22900 chainBosTau7,735 chainBosTau7,747 chainHg19,732 chainHg19,744 chainMm10,732 chainMm10,744 chainNetBosTau7,738 chainNetBosTau7,750 chainNetHg19,735 chainNetHg19,747 chainNetMm10,735 chainNetMm10,747 netBosTau7,735 netBosTau7,747 netHg19,732 netHg19,744 netMm10,732 netMm10,744 23 uniprot,2047 23193287 mrna,489 23300 chainBosTau7,759 chainHg19,756 chainMm10,756 chainNetBosTau7,762 chainNetHg19,759 chainNetMm10,759 netBosTau7,759 netHg19,756 netMm10,756 24 augustusGene,311 transMapEnsemblV5,782 transMapEstV5,751 transMapRefSeqV5,751 transMapRnaV5,751 transMapV5,857 24259432 refSeqComposite,1789 xenoRefGene,359 25 genscan,225 transMapV5,113 xenoRefGene,271 252111 chainBosTau7,727 chainHg19,724 chainMm10,724 chainMonDom5,724 chainNetBosTau7,730 chainNetHg19,727 chainNetMm10,727 chainNetMonDom5,727 netBosTau7,727 netHg19,724 netMm10,724 netMonDom5,724 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 268 genscan,226 27 microsat,131 simpleRepeat,91 28 HLTOGAannotvHg38v1,367 2900 chainBosTau7,734 chainBosTau7,746 chainHg19,731 chainHg19,743 chainMm10,731 chainMm10,743 chainNetBosTau7,737 chainNetBosTau7,749 chainNetHg19,734 chainNetHg19,746 chainNetMm10,734 chainNetMm10,746 netBosTau7,734 netBosTau7,746 netHg19,731 netHg19,743 netMm10,731 netMm10,743 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 3 augustusGene,140 chainBosTau7,440 chainBosTau7,719 chainHg19,437 chainHg19,716 chainMm10,437 chainMm10,716 chainMonDom5,437 chainMonDom5,716 chainNetBosTau7,443 chainNetBosTau7,722 chainNetHg19,440 chainNetHg19,719 chainNetMm10,440 chainNetMm10,719 chainNetMonDom5,440 chainNetMonDom5,719 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 microsat,68 netBosTau7,440 netBosTau7,719 netHg19,437 netHg19,716 netMm10,437 netMm10,716 netMonDom5,437 netMonDom5,716 transMapEnsemblV5,816 transMapEstV5,785 transMapRefSeqV5,785 transMapRnaV5,785 transMapV5,891 uniprot,1123 uniprot,1194 3.1 augustusGene,24 30 chainBosTau7,1083 chainHg19,1080 chainMm10,1080 chainMonDom5,1080 chainNetBosTau7,1086 chainNetHg19,1083 chainNetMm10,1083 chainNetMonDom5,1083 netBosTau7,1083 netHg19,1080 netMm10,1080 netMonDom5,1080 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 3000 chainBosTau7,691 chainHg19,688 chainMm10,688 chainNetBosTau7,694 chainNetHg19,691 chainNetMm10,691 netBosTau7,691 netHg19,688 netMm10,688 31600 chainMonDom5,735 chainMonDom5,747 chainNetMonDom5,738 chainNetMonDom5,750 netMonDom5,735 netMonDom5,747 317900 chainBosTau7,739 chainBosTau7,751 chainHg19,736 chainHg19,748 chainMm10,736 chainMm10,748 chainNetBosTau7,742 chainNetBosTau7,754 chainNetHg19,739 chainNetHg19,751 chainNetMm10,739 chainNetMm10,751 netBosTau7,739 netBosTau7,751 netHg19,736 netHg19,748 netMm10,736 netMm10,748 318300 chainBosTau7,763 chainHg19,760 chainMm10,760 chainNetBosTau7,766 chainNetHg19,763 chainNetMm10,763 netBosTau7,763 netHg19,760 netMm10,760 32 mrna,510 32000 chainMonDom5,759 chainNetMonDom5,762 netMonDom5,759 32111 chainBosTau7,724 chainHg19,721 chainMm10,721 chainMonDom5,721 chainNetBosTau7,727 chainNetHg19,724 chainNetMm10,724 chainNetMonDom5,724 netBosTau7,724 netHg19,721 netMm10,721 netMonDom5,721 325 chainMonDom5,726 chainMonDom5,738 chainNetMonDom5,729 chainNetMonDom5,741 netMonDom5,726 netMonDom5,738 33 refSeqComposite,1818 xenoRefGene,388 3300 chainBosTau7,758 chainHg19,755 chainMm10,755 chainNetBosTau7,761 chainNetHg19,758 chainNetMm10,758 netBosTau7,758 netHg19,755 netMm10,755 34990190 refSeqComposite,1560 350 chainBosTau7,729 chainBosTau7,741 chainHg19,726 chainHg19,738 chainMm10,726 chainMm10,738 chainNetBosTau7,732 chainNetBosTau7,744 chainNetHg19,729 chainNetHg19,741 chainNetMm10,729 chainNetMm10,741 netBosTau7,729 netBosTau7,741 netHg19,726 netHg19,738 netMm10,726 netMm10,738 360 chainMonDom5,727 chainMonDom5,739 chainNetMonDom5,730 chainNetMonDom5,742 netMonDom5,727 netMonDom5,739 3600 chainMonDom5,732 chainMonDom5,744 chainNetMonDom5,735 chainNetMonDom5,747 netMonDom5,732 netMonDom5,744 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 36727467 refSeqComposite,1562 37 gap,138 37104600 HLTOGAannotvHg38v1,372 380 HLTOGAannotvHg38v1,368 4 mrna,530 refSeqComposite,1744 xenoRefGene,314 40 uniprot,2002 400 chainMonDom5,728 chainMonDom5,740 chainNetMonDom5,731 chainNetMonDom5,743 netMonDom5,728 netMonDom5,740 transMapV5,109 4000 chainMonDom5,756 chainNetMonDom5,759 netMonDom5,756 41 mrna,484 418-420 nestedRepeats,359 rmsk,382 42 refSeqComposite,1784 xenoRefGene,354 425 chainBosTau7,730 chainBosTau7,742 chainHg19,727 chainHg19,739 chainMm10,727 chainMm10,739 chainNetBosTau7,733 chainNetBosTau7,745 chainNetHg19,730 chainNetHg19,742 chainNetMm10,730 chainNetMm10,742 netBosTau7,730 netBosTau7,742 netHg19,727 netHg19,739 netMm10,727 netMm10,739 45 refSeqComposite,945 450 chainBosTau7,731 chainBosTau7,743 chainHg19,728 chainHg19,740 chainMm10,728 chainMm10,740 chainMonDom5,729 chainMonDom5,741 chainNetBosTau7,734 chainNetBosTau7,746 chainNetHg19,731 chainNetHg19,743 chainNetMm10,731 chainNetMm10,743 chainNetMonDom5,732 chainNetMonDom5,744 netBosTau7,731 netBosTau7,743 netHg19,728 netHg19,740 netMm10,728 netMm10,740 netMonDom5,729 netMonDom5,741 464-70 uniprot,2049 5 augustusGene,312 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 transMapEnsemblV5,9 transMapEnsemblV5,783 transMapEstV5,7 transMapEstV5,752 transMapRefSeqV5,8 transMapRefSeqV5,752 transMapRnaV5,8 transMapRnaV5,752 transMapV5,6 transMapV5,858 uniprot,2048 5-base gc5BaseBw,6 gc5BaseBw,27 50 HLTOGAannotvHg38v1,167 HLTOGAannotvHg38v1,214 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 nestedRepeats,229 5000 chainMonDom5,688 chainNetMonDom5,691 netMonDom5,688 54 gap,133 56600 chainMonDom5,736 chainMonDom5,748 chainNetMonDom5,739 chainNetMonDom5,751 netMonDom5,736 netMonDom5,748 57 gold,153 57000 chainMonDom5,760 chainNetMonDom5,763 netMonDom5,760 573-80 microsat,133 simpleRepeat,93 57900 chainBosTau7,736 chainBosTau7,748 chainHg19,733 chainHg19,745 chainMm10,733 chainMm10,745 chainNetBosTau7,739 chainNetBosTau7,751 chainNetHg19,736 chainNetHg19,748 chainNetMm10,736 chainNetMm10,748 netBosTau7,736 netBosTau7,748 netHg19,733 netHg19,745 netMm10,733 netMm10,745 58300 chainBosTau7,760 chainHg19,757 chainMm10,757 chainNetBosTau7,763 chainNetHg19,760 chainNetMm10,760 netBosTau7,760 netHg19,757 netMm10,757 6 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 nestedRepeats,391 nestedRepeats,412 nestedRepeats,413 rmsk,414 rmsk,435 rmsk,436 600 chainBosTau7,732 chainBosTau7,744 chainHg19,729 chainHg19,741 chainMm10,729 chainMm10,741 chainMonDom5,730 chainMonDom5,742 chainNetBosTau7,735 chainNetBosTau7,747 chainNetHg19,732 chainNetHg19,744 chainNetMm10,732 chainNetMm10,744 chainNetMonDom5,733 chainNetMonDom5,745 netBosTau7,732 netBosTau7,744 netHg19,729 netHg19,741 netMm10,729 netMm10,741 netMonDom5,730 netMonDom5,742 625 chainMonDom5,750 chainNetMonDom5,753 netMonDom5,750 637-44 augustusGene,313 transMapEnsemblV5,784 transMapEstV5,753 transMapRefSeqV5,753 transMapRnaV5,753 transMapV5,859 656-64 mrna,531 refSeqComposite,1745 xenoRefGene,315 657-63 nestedRepeats,392 rmsk,415 660 chainMonDom5,751 chainNetMonDom5,754 netMonDom5,751 6643 HLTOGAannotvHg38v1,369 7 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 700 chainMonDom5,752 chainNetMonDom5,755 netMonDom5,752 72111 chainBosTau7,725 chainHg19,722 chainMm10,722 chainMonDom5,722 chainNetBosTau7,728 chainNetHg19,725 chainNetMm10,725 chainNetMonDom5,725 netBosTau7,725 netHg19,722 netMm10,722 netMonDom5,722 737 gap,134 743-8 nestedRepeats,414 rmsk,437 750 chainBosTau7,753 chainHg19,750 chainMm10,750 chainMonDom5,753 chainNetBosTau7,756 chainNetHg19,753 chainNetMm10,753 chainNetMonDom5,756 netBosTau7,753 netHg19,750 netMm10,750 netMonDom5,753 7600 chainMonDom5,733 chainMonDom5,745 chainNetMonDom5,736 chainNetMonDom5,748 netMonDom5,733 netMonDom5,745 78-94 genscan,228 80 HLTOGAannotvHg38v1,145 HLTOGAannotvHg38v1,179 HLTOGAannotvHg38v1,226 HLTOGAannotvHg38v1,245 8000 chainMonDom5,757 chainNetMonDom5,760 netMonDom5,757 823 gold,154 825 chainBosTau7,754 chainHg19,751 chainMm10,751 chainNetBosTau7,757 chainNetHg19,754 chainNetMm10,754 netBosTau7,754 netHg19,751 netMm10,751 845 gap,139 850 chainBosTau7,755 chainHg19,752 chainMm10,752 chainNetBosTau7,758 chainNetHg19,755 chainNetMm10,755 netBosTau7,755 netHg19,752 netMm10,752 8994846 nestedRepeats,416 rmsk,439 9 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 nestedRepeats,358 nestedRepeats,390 rmsk,381 rmsk,413 900 chainBosTau7,733 chainBosTau7,745 chainHg19,730 chainHg19,742 chainMm10,730 chainMm10,742 chainMonDom5,754 chainNetBosTau7,736 chainNetBosTau7,748 chainNetHg19,733 chainNetHg19,745 chainNetMm10,733 chainNetMm10,745 chainNetMonDom5,757 netBosTau7,733 netBosTau7,745 netHg19,730 netHg19,742 netMm10,730 netMm10,742 netMonDom5,754 9149143 genscan,230 93 uniprot,1483 96 mrna,432 refSeqComposite,1281 9862982 microsat,135 simpleRepeat,95 _alt uniprot,1419 _fix uniprot,1421 a HLTOGAannotvHg38v1,25 HLTOGAannotvHg38v1,46 HLTOGAannotvHg38v1,50 HLTOGAannotvHg38v1,62 HLTOGAannotvHg38v1,74 HLTOGAannotvHg38v1,116 HLTOGAannotvHg38v1,138 HLTOGAannotvHg38v1,268 HLTOGAannotvHg38v1,291 HLTOGAannotvHg38v1,296 augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainBosTau7,78 chainBosTau7,148 chainBosTau7,201 chainBosTau7,460 chainBosTau7,470 chainBosTau7,474 chainBosTau7,541 chainBosTau7,558 chainBosTau7,561 chainBosTau7,628 chainBosTau7,633 chainBosTau7,639 chainBosTau7,643 chainBosTau7,654 chainBosTau7,686 chainBosTau7,805 chainBosTau7,819 chainBosTau7,825 chainBosTau7,831 chainBosTau7,835 chainBosTau7,838 chainBosTau7,866 chainBosTau7,1056 chainBosTau7,1080 chainBosTau7,1096 chainHg19,76 chainHg19,146 chainHg19,199 chainHg19,457 chainHg19,467 chainHg19,471 chainHg19,538 chainHg19,555 chainHg19,558 chainHg19,625 chainHg19,630 chainHg19,636 chainHg19,640 chainHg19,651 chainHg19,683 chainHg19,802 chainHg19,816 chainHg19,822 chainHg19,828 chainHg19,832 chainHg19,835 chainHg19,863 chainHg19,1053 chainHg19,1077 chainHg19,1093 chainMm10,76 chainMm10,146 chainMm10,199 chainMm10,457 chainMm10,467 chainMm10,471 chainMm10,538 chainMm10,555 chainMm10,558 chainMm10,625 chainMm10,630 chainMm10,636 chainMm10,640 chainMm10,651 chainMm10,683 chainMm10,802 chainMm10,816 chainMm10,822 chainMm10,828 chainMm10,832 chainMm10,835 chainMm10,863 chainMm10,1053 chainMm10,1077 chainMm10,1093 chainMonDom5,76 chainMonDom5,146 chainMonDom5,199 chainMonDom5,457 chainMonDom5,467 chainMonDom5,471 chainMonDom5,538 chainMonDom5,555 chainMonDom5,558 chainMonDom5,625 chainMonDom5,630 chainMonDom5,636 chainMonDom5,640 chainMonDom5,651 chainMonDom5,683 chainMonDom5,802 chainMonDom5,816 chainMonDom5,822 chainMonDom5,828 chainMonDom5,832 chainMonDom5,835 chainMonDom5,863 chainMonDom5,1053 chainMonDom5,1077 chainMonDom5,1093 chainNetBosTau7,81 chainNetBosTau7,151 chainNetBosTau7,204 chainNetBosTau7,463 chainNetBosTau7,473 chainNetBosTau7,477 chainNetBosTau7,544 chainNetBosTau7,561 chainNetBosTau7,564 chainNetBosTau7,631 chainNetBosTau7,636 chainNetBosTau7,642 chainNetBosTau7,646 chainNetBosTau7,657 chainNetBosTau7,689 chainNetBosTau7,808 chainNetBosTau7,822 chainNetBosTau7,828 chainNetBosTau7,834 chainNetBosTau7,838 chainNetBosTau7,841 chainNetBosTau7,869 chainNetBosTau7,1059 chainNetBosTau7,1083 chainNetBosTau7,1099 chainNetHg19,79 chainNetHg19,149 chainNetHg19,202 chainNetHg19,460 chainNetHg19,470 chainNetHg19,474 chainNetHg19,541 chainNetHg19,558 chainNetHg19,561 chainNetHg19,628 chainNetHg19,633 chainNetHg19,639 chainNetHg19,643 chainNetHg19,654 chainNetHg19,686 chainNetHg19,805 chainNetHg19,819 chainNetHg19,825 chainNetHg19,831 chainNetHg19,835 chainNetHg19,838 chainNetHg19,866 chainNetHg19,1056 chainNetHg19,1080 chainNetHg19,1096 chainNetMm10,79 chainNetMm10,149 chainNetMm10,202 chainNetMm10,460 chainNetMm10,470 chainNetMm10,474 chainNetMm10,541 chainNetMm10,558 chainNetMm10,561 chainNetMm10,628 chainNetMm10,633 chainNetMm10,639 chainNetMm10,643 chainNetMm10,654 chainNetMm10,686 chainNetMm10,805 chainNetMm10,819 chainNetMm10,825 chainNetMm10,831 chainNetMm10,835 chainNetMm10,838 chainNetMm10,866 chainNetMm10,1056 chainNetMm10,1080 chainNetMm10,1096 chainNetMonDom5,79 chainNetMonDom5,149 chainNetMonDom5,202 chainNetMonDom5,460 chainNetMonDom5,470 chainNetMonDom5,474 chainNetMonDom5,541 chainNetMonDom5,558 chainNetMonDom5,561 chainNetMonDom5,628 chainNetMonDom5,633 chainNetMonDom5,639 chainNetMonDom5,643 chainNetMonDom5,654 chainNetMonDom5,686 chainNetMonDom5,805 chainNetMonDom5,819 chainNetMonDom5,825 chainNetMonDom5,831 chainNetMonDom5,835 chainNetMonDom5,838 chainNetMonDom5,866 chainNetMonDom5,1056 chainNetMonDom5,1080 chainNetMonDom5,1096 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 gap,100 gap,104 gc5BaseBw,44 genscan,102 genscan,132 gold,118 gold,124 microsat,53 microsat,119 mrna,64 mrna,81 mrna,116 mrna,142 mrna,215 mrna,334 mrna,401 mrna,420 nestedRepeats,177 nestedRepeats,226 nestedRepeats,344 nestedRepeats,363 netBosTau7,78 netBosTau7,148 netBosTau7,201 netBosTau7,460 netBosTau7,470 netBosTau7,474 netBosTau7,541 netBosTau7,558 netBosTau7,561 netBosTau7,628 netBosTau7,633 netBosTau7,639 netBosTau7,643 netBosTau7,654 netBosTau7,686 netBosTau7,805 netBosTau7,819 netBosTau7,825 netBosTau7,831 netBosTau7,835 netBosTau7,838 netBosTau7,866 netBosTau7,1056 netBosTau7,1080 netBosTau7,1096 netHg19,76 netHg19,146 netHg19,199 netHg19,457 netHg19,467 netHg19,471 netHg19,538 netHg19,555 netHg19,558 netHg19,625 netHg19,630 netHg19,636 netHg19,640 netHg19,651 netHg19,683 netHg19,802 netHg19,816 netHg19,822 netHg19,828 netHg19,832 netHg19,835 netHg19,863 netHg19,1053 netHg19,1077 netHg19,1093 netMm10,76 netMm10,146 netMm10,199 netMm10,457 netMm10,467 netMm10,471 netMm10,538 netMm10,555 netMm10,558 netMm10,625 netMm10,630 netMm10,636 netMm10,640 netMm10,651 netMm10,683 netMm10,802 netMm10,816 netMm10,822 netMm10,828 netMm10,832 netMm10,835 netMm10,863 netMm10,1053 netMm10,1077 netMm10,1093 netMonDom5,76 netMonDom5,146 netMonDom5,199 netMonDom5,457 netMonDom5,467 netMonDom5,471 netMonDom5,538 netMonDom5,555 netMonDom5,558 netMonDom5,625 netMonDom5,630 netMonDom5,636 netMonDom5,640 netMonDom5,651 netMonDom5,683 netMonDom5,802 netMonDom5,816 netMonDom5,822 netMonDom5,828 netMonDom5,832 netMonDom5,835 netMonDom5,863 netMonDom5,1053 netMonDom5,1077 netMonDom5,1093 refSeqComposite,148 refSeqComposite,159 refSeqComposite,296 refSeqComposite,311 refSeqComposite,533 refSeqComposite,646 refSeqComposite,794 refSeqComposite,1056 refSeqComposite,1250 refSeqComposite,1269 refSeqComposite,1522 refSeqComposite,1541 refSeqComposite,1567 refSeqComposite,1656 refSeqComposite,1759 refSeqComposite,1802 rmsk,36 rmsk,56 rmsk,226 rmsk,240 rmsk,367 rmsk,386 simpleRepeat,79 transMapEnsemblV5,83 transMapEnsemblV5,116 transMapEnsemblV5,207 transMapEnsemblV5,320 transMapEnsemblV5,356 transMapEnsemblV5,400 transMapEnsemblV5,426 transMapEnsemblV5,479 transMapEnsemblV5,549 transMapEnsemblV5,628 transMapEnsemblV5,656 transMapEnsemblV5,715 transMapEstV5,52 transMapEstV5,85 transMapEstV5,176 transMapEstV5,289 transMapEstV5,325 transMapEstV5,369 transMapEstV5,395 transMapEstV5,448 transMapEstV5,518 transMapEstV5,597 transMapEstV5,625 transMapEstV5,684 transMapRefSeqV5,52 transMapRefSeqV5,85 transMapRefSeqV5,176 transMapRefSeqV5,289 transMapRefSeqV5,325 transMapRefSeqV5,369 transMapRefSeqV5,395 transMapRefSeqV5,448 transMapRefSeqV5,518 transMapRefSeqV5,597 transMapRefSeqV5,625 transMapRefSeqV5,684 transMapRnaV5,52 transMapRnaV5,85 transMapRnaV5,176 transMapRnaV5,289 transMapRnaV5,325 transMapRnaV5,369 transMapRnaV5,395 transMapRnaV5,448 transMapRnaV5,518 transMapRnaV5,597 transMapRnaV5,625 transMapRnaV5,684 transMapV5,53 transMapV5,191 transMapV5,282 transMapV5,395 transMapV5,431 transMapV5,475 transMapV5,501 transMapV5,554 transMapV5,624 transMapV5,703 transMapV5,731 transMapV5,790 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 windowmaskerSdust,91 xenoRefGene,240 xenoRefGene,259 xenoRefGene,329 xenoRefGene,372 a91-114-31-123 chainBosTau7,679 chainHg19,676 chainMm10,676 chainNetBosTau7,682 chainNetHg19,679 chainNetMm10,679 netBosTau7,679 netHg19,676 netMm10,676 a91-90-25-100 chainMonDom5,676 chainNetMonDom5,679 netMonDom5,676 aa unipModif,1 windowmaskerSdust,97 ab augustusGene,3 augustusGene,16 abbreviated chainBosTau7,591 chainHg19,588 chainMm10,588 chainMonDom5,588 chainNetBosTau7,594 chainNetHg19,591 chainNetMm10,591 chainNetMonDom5,591 netBosTau7,591 netHg19,588 netMm10,588 netMonDom5,588 about HLTOGAannotvHg38v1,301 chainBosTau7,466 chainBosTau7,479 chainBosTau7,855 chainHg19,463 chainHg19,476 chainHg19,852 chainMm10,463 chainMm10,476 chainMm10,852 chainMonDom5,463 chainMonDom5,476 chainMonDom5,852 chainNetBosTau7,469 chainNetBosTau7,482 chainNetBosTau7,858 chainNetHg19,466 chainNetHg19,479 chainNetHg19,855 chainNetMm10,466 chainNetMm10,479 chainNetMm10,855 chainNetMonDom5,466 chainNetMonDom5,479 chainNetMonDom5,855 gap,36 genscan,127 gold,38 microsat,98 mrna,351 netBosTau7,466 netBosTau7,479 netBosTau7,855 netHg19,463 netHg19,476 netHg19,852 netMm10,463 netMm10,476 netMm10,852 netMonDom5,463 netMonDom5,476 netMonDom5,852 refSeqComposite,96 refSeqComposite,854 refSeqComposite,1189 refSeqComposite,1385 refSeqComposite,1464 simpleRepeat,59 transMapEnsemblV5,133 transMapEstV5,102 transMapRefSeqV5,102 transMapRnaV5,102 transMapV5,208 xenoRefGene,178 above chainBosTau7,538 chainBosTau7,550 chainBosTau7,570 chainHg19,535 chainHg19,547 chainHg19,567 chainMm10,535 chainMm10,547 chainMm10,567 chainMonDom5,535 chainMonDom5,547 chainMonDom5,567 chainNetBosTau7,541 chainNetBosTau7,553 chainNetBosTau7,573 chainNetHg19,538 chainNetHg19,550 chainNetHg19,570 chainNetMm10,538 chainNetMm10,550 chainNetMm10,570 chainNetMonDom5,538 chainNetMonDom5,550 chainNetMonDom5,570 nestedRepeats,218 netBosTau7,538 netBosTau7,550 netBosTau7,570 netHg19,535 netHg19,547 netHg19,567 netMm10,535 netMm10,547 netMm10,567 netMonDom5,535 netMonDom5,547 netMonDom5,567 uniprot,1525 abundance chainBosTau7,183 chainHg19,181 chainMm10,181 chainMonDom5,181 chainNetBosTau7,186 chainNetHg19,184 chainNetMm10,184 chainNetMonDom5,184 netBosTau7,183 netHg19,181 netMm10,181 netMonDom5,181 acad chainBosTau7,1076 chainHg19,1073 chainMm10,1073 chainMonDom5,1073 chainNetBosTau7,1079 chainNetHg19,1076 chainNetMm10,1076 chainNetMonDom5,1076 netBosTau7,1076 netHg19,1073 netMm10,1073 netMonDom5,1073 acc ucscToRefSeq,2 acceptor genscan,32 access cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 refSeqComposite,1291 refSeqComposite,1355 refSeqComposite,1445 refSeqComposite,1654 transMapEnsemblV5,519 transMapEnsemblV5,578 transMapEstV5,488 transMapEstV5,547 transMapRefSeqV5,488 transMapRefSeqV5,547 transMapRnaV5,488 transMapRnaV5,547 transMapV5,594 transMapV5,653 uniprot,896 uniprot,1706 uniprot,1838 accessed refSeqComposite,1300 refSeqComposite,1323 transMapEnsemblV5,528 transMapEstV5,497 transMapRefSeqV5,497 transMapRnaV5,497 transMapV5,603 accesses refSeqComposite,1628 accessing refSeqComposite,1386 transMapEnsemblV5,571 transMapEstV5,540 transMapRefSeqV5,540 transMapRnaV5,540 transMapV5,646 accession refSeqComposite,781 refSeqComposite,806 ucscToINSDC,2 ucscToINSDC,23 ucscToRefSeq,4 ucscToRefSeq,18 xenoRefGene,118 xenoRefGene,130 accession.version-srcuniq.destuniq transMapEnsemblV5,422 transMapEstV5,391 transMapRefSeqV5,391 transMapRnaV5,391 transMapV5,497 accessions refSeqComposite,222 refSeqComposite,351 refSeqComposite,495 transMapEnsemblV5,394 transMapEstV5,363 transMapRefSeqV5,363 transMapRnaV5,363 transMapV5,469 according augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 nestedRepeats,183 accurately HLTOGAannotvHg38v1,91 acgt chainBosTau7,678 chainHg19,675 chainMm10,675 chainMonDom5,675 chainNetBosTau7,681 chainNetHg19,678 chainNetMm10,678 chainNetMonDom5,678 netBosTau7,678 netHg19,675 netMm10,675 netMonDom5,675 acid unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids microsat,126 mrna,480 mrna,505 refSeqComposite,1780 refSeqComposite,1813 simpleRepeat,86 uniprot,620 uniprot,1998 xenoRefGene,350 xenoRefGene,383 acronym uniprot,546 added chainBosTau7,601 chainHg19,598 chainMm10,598 chainMonDom5,598 chainNetBosTau7,604 chainNetHg19,601 chainNetMm10,601 chainNetMonDom5,601 nestedRepeats,147 netBosTau7,601 netHg19,598 netMm10,598 netMonDom5,598 transMapEnsemblV5,428 transMapEnsemblV5,438 transMapEstV5,397 transMapEstV5,407 transMapRefSeqV5,397 transMapRefSeqV5,407 transMapRnaV5,397 transMapRnaV5,407 transMapV5,503 transMapV5,513 uniprot,1187 additional HLTOGAannotvHg38v1,299 nestedRepeats,288 rmsk,295 additions refSeqComposite,119 adjust refSeqComposite,744 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 uniprot,1917 advice chainBosTau7,941 chainBosTau7,973 chainHg19,938 chainHg19,970 chainMm10,938 chainMm10,970 chainMonDom5,938 chainMonDom5,970 chainNetBosTau7,944 chainNetBosTau7,976 chainNetHg19,941 chainNetHg19,973 chainNetMm10,941 chainNetMm10,973 chainNetMonDom5,941 chainNetMonDom5,973 netBosTau7,941 netBosTau7,973 netHg19,938 netHg19,970 netMm10,938 netMm10,970 netMonDom5,938 netMonDom5,970 advise refSeqComposite,78 ae HLTOGAannotvHg38v1,347 af nestedRepeats,372 nestedRepeats,396 rmsk,395 rmsk,419 afa nestedRepeats,325 rmsk,348 affine chainBosTau7,88 chainHg19,86 chainMm10,86 chainMonDom5,86 chainNetBosTau7,91 chainNetHg19,89 chainNetMm10,89 chainNetMonDom5,89 netBosTau7,88 netHg19,86 netMm10,86 netMonDom5,86 after chainBosTau7,913 chainHg19,910 chainMm10,910 chainMonDom5,910 chainNetBosTau7,916 chainNetHg19,913 chainNetMm10,913 chainNetMonDom5,913 cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 netBosTau7,913 netHg19,910 netMm10,910 netMonDom5,910 uniprot,294 uniprot,1329 again transMapEnsemblV5,410 transMapEstV5,379 transMapRefSeqV5,379 transMapRnaV5,379 transMapV5,485 uniprot,629 uniprot,1500 against mrna,344 mrna,393 refSeqComposite,1232 transMapEnsemblV5,126 transMapEstV5,95 transMapRefSeqV5,95 transMapRnaV5,95 transMapV5,201 xenoRefGene,222 agarwala windowmaskerSdust,98 agp gap,50 gap,59 gap,66 gold,49 gold,58 gold,65 ahmed HLTOGAannotvHg38v1,348 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 al HLTOGAannotvHg38v1,355 cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 refSeqComposite,1771 transMapEnsemblV5,736 transMapEstV5,705 transMapRefSeqV5,705 transMapRnaV5,705 transMapV5,811 xenoRefGene,341 alejo uniprot,1966 algorithm augustusGene,130 transMapEnsemblV5,28 transMapEstV5,26 transMapRefSeqV5,26 transMapRnaV5,26 transMapV5,25 algorithms uniprot,52 align chainBosTau7,199 chainHg19,197 chainMm10,197 chainMonDom5,197 chainNetBosTau7,202 chainNetHg19,200 chainNetMm10,200 chainNetMonDom5,200 netBosTau7,199 netHg19,197 netMm10,197 netMonDom5,197 uniprot,1216 alignable chainBosTau7,23 chainBosTau7,39 chainHg19,22 chainHg19,38 chainMm10,22 chainMm10,38 chainMonDom5,22 chainMonDom5,38 chainNetBosTau7,26 chainNetBosTau7,42 chainNetHg19,25 chainNetHg19,41 chainNetMm10,25 chainNetMm10,41 chainNetMonDom5,25 chainNetMonDom5,41 netBosTau7,23 netBosTau7,39 netHg19,22 netHg19,38 netMm10,22 netMm10,38 netMonDom5,22 netMonDom5,38 aligned chainBosTau7,594 chainHg19,591 chainMm10,591 chainMonDom5,591 chainNetBosTau7,597 chainNetHg19,594 chainNetMm10,594 chainNetMonDom5,594 mrna,392 mrna,404 netBosTau7,594 netHg19,591 netMm10,591 netMonDom5,591 refSeqComposite,81 refSeqComposite,190 refSeqComposite,305 refSeqComposite,898 refSeqComposite,1061 refSeqComposite,1231 refSeqComposite,1253 transMapV5,117 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoRefGene,221 xenoRefGene,243 aligning chainBosTau7,137 chainBosTau7,338 chainBosTau7,368 chainHg19,135 chainHg19,335 chainHg19,365 chainMm10,135 chainMm10,335 chainMm10,365 chainMonDom5,135 chainMonDom5,335 chainMonDom5,365 chainNetBosTau7,140 chainNetBosTau7,341 chainNetBosTau7,371 chainNetHg19,138 chainNetHg19,338 chainNetHg19,368 chainNetMm10,138 chainNetMm10,338 chainNetMm10,368 chainNetMonDom5,138 chainNetMonDom5,338 chainNetMonDom5,368 netBosTau7,137 netBosTau7,338 netBosTau7,368 netHg19,135 netHg19,335 netHg19,365 netMm10,135 netMm10,335 netMm10,365 netMonDom5,135 netMonDom5,335 netMonDom5,365 uniprot,952 alignment HLTOGAannotvHg38v1,65 chainBosTau7,263 chainBosTau7,1023 chainHg19,261 chainHg19,1020 chainMm10,261 chainMm10,1020 chainMonDom5,261 chainMonDom5,1020 chainNetBosTau7,266 chainNetBosTau7,1026 chainNetHg19,264 chainNetHg19,1023 chainNetMm10,264 chainNetMm10,1023 chainNetMonDom5,264 chainNetMonDom5,1023 mrna,39 mrna,362 mrna,368 mrna,380 mrna,409 mrna,523 netBosTau7,9 netBosTau7,263 netBosTau7,1023 netHg19,8 netHg19,261 netHg19,1020 netMm10,8 netMm10,261 netMm10,1020 netMonDom5,8 netMonDom5,261 netMonDom5,1020 refSeqComposite,194 refSeqComposite,328 refSeqComposite,460 refSeqComposite,1150 refSeqComposite,1242 refSeqComposite,1258 refSeqComposite,1737 transMapEnsemblV5,27 transMapEnsemblV5,79 transMapEnsemblV5,104 transMapEnsemblV5,141 transMapEnsemblV5,197 transMapEnsemblV5,211 transMapEnsemblV5,390 transMapEnsemblV5,433 transMapEstV5,25 transMapEstV5,48 transMapEstV5,73 transMapEstV5,110 transMapEstV5,166 transMapEstV5,180 transMapEstV5,359 transMapEstV5,402 transMapRefSeqV5,25 transMapRefSeqV5,48 transMapRefSeqV5,73 transMapRefSeqV5,110 transMapRefSeqV5,166 transMapRefSeqV5,180 transMapRefSeqV5,359 transMapRefSeqV5,402 transMapRnaV5,25 transMapRnaV5,48 transMapRnaV5,73 transMapRnaV5,110 transMapRnaV5,166 transMapRnaV5,180 transMapRnaV5,359 transMapRnaV5,402 transMapV5,24 transMapV5,49 transMapV5,179 transMapV5,216 transMapV5,272 transMapV5,286 transMapV5,465 transMapV5,508 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoRefGene,232 xenoRefGene,248 xenoRefGene,307 alignments HLTOGAannotvHg38v1,23 HLTOGAannotvHg38v1,80 HLTOGAannotvHg38v1,313 augustusGene,300 chainBosTau7,10 chainBosTau7,64 chainBosTau7,453 chainBosTau7,606 chainBosTau7,618 chainBosTau7,626 chainBosTau7,653 chainBosTau7,771 chainBosTau7,1043 chainBosTau7,1108 chainHg19,9 chainHg19,63 chainHg19,450 chainHg19,603 chainHg19,615 chainHg19,623 chainHg19,650 chainHg19,768 chainHg19,1040 chainHg19,1105 chainMm10,9 chainMm10,63 chainMm10,450 chainMm10,603 chainMm10,615 chainMm10,623 chainMm10,650 chainMm10,768 chainMm10,1040 chainMm10,1105 chainMonDom5,9 chainMonDom5,63 chainMonDom5,450 chainMonDom5,603 chainMonDom5,615 chainMonDom5,623 chainMonDom5,650 chainMonDom5,768 chainMonDom5,1040 chainMonDom5,1105 chainNetBosTau7,13 chainNetBosTau7,67 chainNetBosTau7,456 chainNetBosTau7,609 chainNetBosTau7,621 chainNetBosTau7,629 chainNetBosTau7,656 chainNetBosTau7,774 chainNetBosTau7,1046 chainNetBosTau7,1111 chainNetBosTau7Viewchain,11 chainNetBosTau7Viewnet,11 chainNetHg19,12 chainNetHg19,66 chainNetHg19,453 chainNetHg19,606 chainNetHg19,618 chainNetHg19,626 chainNetHg19,653 chainNetHg19,771 chainNetHg19,1043 chainNetHg19,1108 chainNetHg19Viewchain,10 chainNetHg19Viewnet,10 chainNetMm10,12 chainNetMm10,66 chainNetMm10,453 chainNetMm10,606 chainNetMm10,618 chainNetMm10,626 chainNetMm10,653 chainNetMm10,771 chainNetMm10,1043 chainNetMm10,1108 chainNetMm10Viewchain,10 chainNetMm10Viewnet,10 chainNetMonDom5,12 chainNetMonDom5,66 chainNetMonDom5,453 chainNetMonDom5,606 chainNetMonDom5,618 chainNetMonDom5,626 chainNetMonDom5,653 chainNetMonDom5,771 chainNetMonDom5,1043 chainNetMonDom5,1108 chainNetMonDom5Viewchain,10 chainNetMonDom5Viewnet,10 mrna,17 mrna,418 ncbiRefSeqPsl,2 ncbiRefSeqPsl,4 netBosTau7,64 netBosTau7,453 netBosTau7,606 netBosTau7,618 netBosTau7,626 netBosTau7,653 netBosTau7,771 netBosTau7,1043 netBosTau7,1108 netHg19,63 netHg19,450 netHg19,603 netHg19,615 netHg19,623 netHg19,650 netHg19,768 netHg19,1040 netHg19,1105 netMm10,63 netMm10,450 netMm10,603 netMm10,615 netMm10,623 netMm10,650 netMm10,768 netMm10,1040 netMm10,1105 netMonDom5,63 netMonDom5,450 netMonDom5,603 netMonDom5,615 netMonDom5,623 netMonDom5,650 netMonDom5,768 netMonDom5,1040 netMonDom5,1105 refSeqComposite,268 refSeqComposite,367 refSeqComposite,434 refSeqComposite,436 refSeqComposite,1211 refSeqComposite,1267 refSeqComposite,1424 rmsk,306 transMapEnsemblV5,21 transMapEnsemblV5,72 transMapEnsemblV5,155 transMapEnsemblV5,168 transMapEnsemblV5,327 transMapEnsemblV5,340 transMapEnsemblV5,350 transMapEnsemblV5,373 transMapEnsemblV5,444 transMapEnsemblV5,456 transMapEnsemblV5,771 transMapEstV5,19 transMapEstV5,41 transMapEstV5,124 transMapEstV5,137 transMapEstV5,296 transMapEstV5,309 transMapEstV5,319 transMapEstV5,342 transMapEstV5,413 transMapEstV5,425 transMapEstV5,740 transMapRefSeqV5,19 transMapRefSeqV5,41 transMapRefSeqV5,124 transMapRefSeqV5,137 transMapRefSeqV5,296 transMapRefSeqV5,309 transMapRefSeqV5,319 transMapRefSeqV5,342 transMapRefSeqV5,413 transMapRefSeqV5,425 transMapRefSeqV5,740 transMapRnaV5,19 transMapRnaV5,41 transMapRnaV5,124 transMapRnaV5,137 transMapRnaV5,296 transMapRnaV5,309 transMapRnaV5,319 transMapRnaV5,342 transMapRnaV5,413 transMapRnaV5,425 transMapRnaV5,740 transMapV5,4 transMapV5,18 transMapV5,40 transMapV5,68 transMapV5,86 transMapV5,128 transMapV5,141 transMapV5,230 transMapV5,243 transMapV5,402 transMapV5,415 transMapV5,425 transMapV5,448 transMapV5,519 transMapV5,531 transMapV5,846 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoRefGene,257 aligns transMapV5,163 all augustusGene,207 chainBosTau7,625 chainHg19,622 chainMm10,622 chainMonDom5,622 chainNetBosTau7,628 chainNetHg19,625 chainNetMm10,625 chainNetMonDom5,625 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 mrna,138 mrna,192 mrna,247 ncbiRefSeq,2 nestedRepeats,138 nestedRepeats,170 netBosTau7,625 netHg19,622 netMm10,622 netMonDom5,622 refSeqComposite,34 refSeqComposite,85 refSeqComposite,178 refSeqComposite,183 refSeqComposite,199 refSeqComposite,201 refSeqComposite,215 refSeqComposite,345 refSeqComposite,381 refSeqComposite,589 refSeqComposite,792 refSeqComposite,1410 refSeqComposite,1574 refSeqComposite,1666 refSeqComposite,1671 rmsk,65 transMapEnsemblV5,191 transMapEstV5,160 transMapRefSeqV5,160 transMapRnaV5,160 transMapV5,266 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 allows augustusGene,168 chainBosTau7,83 chainHg19,81 chainMm10,81 chainMonDom5,81 chainNetBosTau7,86 chainNetHg19,84 chainNetMm10,84 chainNetMonDom5,84 mrna,337 netBosTau7,83 netHg19,81 netMm10,81 netMonDom5,81 refSeqComposite,825 transMapEnsemblV5,119 transMapEnsemblV5,289 transMapEstV5,88 transMapEstV5,258 transMapRefSeqV5,88 transMapRefSeqV5,258 transMapRnaV5,88 transMapRnaV5,258 transMapV5,194 transMapV5,364 xenoRefGene,149 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 along transMapEnsemblV5,182 transMapEstV5,151 transMapRefSeqV5,151 transMapRnaV5,151 transMapV5,257 alpha refSeqComposite,418 already chainBosTau7,816 chainHg19,813 chainMm10,813 chainMonDom5,813 chainNetBosTau7,819 chainNetHg19,816 chainNetMm10,816 chainNetMonDom5,816 netBosTau7,816 netHg19,813 netMm10,813 netMonDom5,813 also HLTOGAannotvHg38v1,190 chainBosTau7,94 chainHg19,92 chainMm10,92 chainMonDom5,92 chainNetBosTau7,97 chainNetHg19,95 chainNetMm10,95 chainNetMonDom5,95 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 gap,32 gold,34 mrna,219 mrna,327 mrna,371 netBosTau7,94 netHg19,92 netMm10,92 netMonDom5,92 refSeqComposite,1129 refSeqComposite,1321 refSeqComposite,1354 refSeqComposite,1586 transMapEnsemblV5,109 transMapEnsemblV5,144 transMapEnsemblV5,648 transMapEstV5,78 transMapEstV5,113 transMapEstV5,617 transMapRefSeqV5,78 transMapRefSeqV5,113 transMapRefSeqV5,617 transMapRnaV5,78 transMapRnaV5,113 transMapRnaV5,617 transMapV5,184 transMapV5,219 transMapV5,723 uniprot,666 uniprot,706 uniprot,1799 alt uniprot,850 alter mrna,75 alternating gold,90 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 alus rmsk,160 always gold,121 uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 ambiguous refSeqComposite,990 amino unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 amount rmsk,215 amsterdam genscan,201 an chainBosTau7,155 chainBosTau7,182 chainBosTau7,188 chainHg19,153 chainHg19,180 chainHg19,186 chainMm10,153 chainMm10,180 chainMm10,186 chainMonDom5,153 chainMonDom5,180 chainMonDom5,186 chainNetBosTau7,158 chainNetBosTau7,185 chainNetBosTau7,191 chainNetHg19,156 chainNetHg19,183 chainNetHg19,189 chainNetMm10,156 chainNetMm10,183 chainNetMm10,189 chainNetMonDom5,156 chainNetMonDom5,183 chainNetMonDom5,189 cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 gc5BaseBw,65 nestedRepeats,196 nestedRepeats,347 netBosTau7,155 netBosTau7,182 netBosTau7,188 netHg19,153 netHg19,180 netHg19,186 netMm10,153 netMm10,180 netMm10,186 netMonDom5,153 netMonDom5,180 netMonDom5,186 refSeqComposite,748 refSeqComposite,819 refSeqComposite,1241 refSeqComposite,1773 rmsk,370 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,143 xenoRefGene,231 xenoRefGene,343 analysis refSeqComposite,76 refSeqComposite,1459 transMapEnsemblV5,540 transMapEstV5,509 transMapRefSeqV5,509 transMapRnaV5,509 transMapV5,615 uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 and HLTOGAannotvHg38v1,12 HLTOGAannotvHg38v1,34 HLTOGAannotvHg38v1,61 HLTOGAannotvHg38v1,69 HLTOGAannotvHg38v1,83 HLTOGAannotvHg38v1,86 HLTOGAannotvHg38v1,110 HLTOGAannotvHg38v1,130 HLTOGAannotvHg38v1,153 HLTOGAannotvHg38v1,176 HLTOGAannotvHg38v1,223 HLTOGAannotvHg38v1,310 augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 chainBosTau7,100 chainBosTau7,115 chainBosTau7,231 chainBosTau7,239 chainBosTau7,253 chainBosTau7,293 chainBosTau7,316 chainBosTau7,442 chainBosTau7,597 chainBosTau7,632 chainBosTau7,641 chainBosTau7,782 chainBosTau7,860 chainBosTau7,892 chainBosTau7,903 chainBosTau7,912 chainBosTau7,937 chainBosTau7,952 chainBosTau7,977 chainBosTau7,983 chainBosTau7,989 chainBosTau7,996 chainBosTau7,1002 chainBosTau7,1066 chainBosTau7,1071 chainHg19,98 chainHg19,113 chainHg19,229 chainHg19,237 chainHg19,251 chainHg19,291 chainHg19,313 chainHg19,439 chainHg19,594 chainHg19,629 chainHg19,638 chainHg19,779 chainHg19,857 chainHg19,889 chainHg19,900 chainHg19,909 chainHg19,934 chainHg19,949 chainHg19,974 chainHg19,980 chainHg19,986 chainHg19,993 chainHg19,999 chainHg19,1063 chainHg19,1068 chainMm10,98 chainMm10,113 chainMm10,229 chainMm10,237 chainMm10,251 chainMm10,291 chainMm10,313 chainMm10,439 chainMm10,594 chainMm10,629 chainMm10,638 chainMm10,779 chainMm10,857 chainMm10,889 chainMm10,900 chainMm10,909 chainMm10,934 chainMm10,949 chainMm10,974 chainMm10,980 chainMm10,986 chainMm10,993 chainMm10,999 chainMm10,1063 chainMm10,1068 chainMonDom5,98 chainMonDom5,113 chainMonDom5,229 chainMonDom5,237 chainMonDom5,251 chainMonDom5,291 chainMonDom5,313 chainMonDom5,439 chainMonDom5,594 chainMonDom5,629 chainMonDom5,638 chainMonDom5,779 chainMonDom5,857 chainMonDom5,889 chainMonDom5,900 chainMonDom5,909 chainMonDom5,934 chainMonDom5,949 chainMonDom5,974 chainMonDom5,980 chainMonDom5,986 chainMonDom5,993 chainMonDom5,999 chainMonDom5,1063 chainMonDom5,1068 chainNetBosTau7,11 chainNetBosTau7,103 chainNetBosTau7,118 chainNetBosTau7,234 chainNetBosTau7,242 chainNetBosTau7,256 chainNetBosTau7,296 chainNetBosTau7,319 chainNetBosTau7,445 chainNetBosTau7,600 chainNetBosTau7,635 chainNetBosTau7,644 chainNetBosTau7,785 chainNetBosTau7,863 chainNetBosTau7,895 chainNetBosTau7,906 chainNetBosTau7,915 chainNetBosTau7,940 chainNetBosTau7,955 chainNetBosTau7,980 chainNetBosTau7,986 chainNetBosTau7,992 chainNetBosTau7,999 chainNetBosTau7,1005 chainNetBosTau7,1069 chainNetBosTau7,1074 chainNetBosTau7Viewchain,9 chainNetBosTau7Viewnet,9 chainNetHg19,10 chainNetHg19,101 chainNetHg19,116 chainNetHg19,232 chainNetHg19,240 chainNetHg19,254 chainNetHg19,294 chainNetHg19,316 chainNetHg19,442 chainNetHg19,597 chainNetHg19,632 chainNetHg19,641 chainNetHg19,782 chainNetHg19,860 chainNetHg19,892 chainNetHg19,903 chainNetHg19,912 chainNetHg19,937 chainNetHg19,952 chainNetHg19,977 chainNetHg19,983 chainNetHg19,989 chainNetHg19,996 chainNetHg19,1002 chainNetHg19,1066 chainNetHg19,1071 chainNetHg19Viewchain,8 chainNetHg19Viewnet,8 chainNetMm10,10 chainNetMm10,101 chainNetMm10,116 chainNetMm10,232 chainNetMm10,240 chainNetMm10,254 chainNetMm10,294 chainNetMm10,316 chainNetMm10,442 chainNetMm10,597 chainNetMm10,632 chainNetMm10,641 chainNetMm10,782 chainNetMm10,860 chainNetMm10,892 chainNetMm10,903 chainNetMm10,912 chainNetMm10,937 chainNetMm10,952 chainNetMm10,977 chainNetMm10,983 chainNetMm10,989 chainNetMm10,996 chainNetMm10,1002 chainNetMm10,1066 chainNetMm10,1071 chainNetMm10Viewchain,8 chainNetMm10Viewnet,8 chainNetMonDom5,10 chainNetMonDom5,101 chainNetMonDom5,116 chainNetMonDom5,232 chainNetMonDom5,240 chainNetMonDom5,254 chainNetMonDom5,294 chainNetMonDom5,316 chainNetMonDom5,442 chainNetMonDom5,597 chainNetMonDom5,632 chainNetMonDom5,641 chainNetMonDom5,782 chainNetMonDom5,860 chainNetMonDom5,892 chainNetMonDom5,903 chainNetMonDom5,912 chainNetMonDom5,937 chainNetMonDom5,952 chainNetMonDom5,977 chainNetMonDom5,983 chainNetMonDom5,989 chainNetMonDom5,996 chainNetMonDom5,1002 chainNetMonDom5,1066 chainNetMonDom5,1071 chainNetMonDom5Viewchain,8 chainNetMonDom5Viewnet,8 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 cytoBandIdeo,8 gap,5 gap,81 gap,103 gc5BaseBw,9 gc5BaseBw,22 gc5BaseBw,74 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,92 gold,106 gold,112 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,10 mrna,24 mrna,29 mrna,78 mrna,239 mrna,358 mrna,429 ncbiRefSeq,7 ncbiRefSeq,16 ncbiRefSeqCurated,14 ncbiRefSeqGenomicDiff,8 ncbiRefSeqGenomicDiff,13 ncbiRefSeqOther,16 ncbiRefSeqPredicted,12 ncbiRefSeqPsl,8 nestedRepeats,12 nestedRepeats,38 nestedRepeats,113 nestedRepeats,162 nestedRepeats,166 nestedRepeats,231 nestedRepeats,256 nestedRepeats,309 nestedRepeats,315 nestedRepeats,346 nestedRepeats,375 netBosTau7,100 netBosTau7,115 netBosTau7,231 netBosTau7,239 netBosTau7,253 netBosTau7,293 netBosTau7,316 netBosTau7,442 netBosTau7,597 netBosTau7,632 netBosTau7,641 netBosTau7,782 netBosTau7,860 netBosTau7,892 netBosTau7,903 netBosTau7,912 netBosTau7,937 netBosTau7,952 netBosTau7,977 netBosTau7,983 netBosTau7,989 netBosTau7,996 netBosTau7,1002 netBosTau7,1066 netBosTau7,1071 netHg19,98 netHg19,113 netHg19,229 netHg19,237 netHg19,251 netHg19,291 netHg19,313 netHg19,439 netHg19,594 netHg19,629 netHg19,638 netHg19,779 netHg19,857 netHg19,889 netHg19,900 netHg19,909 netHg19,934 netHg19,949 netHg19,974 netHg19,980 netHg19,986 netHg19,993 netHg19,999 netHg19,1063 netHg19,1068 netMm10,98 netMm10,113 netMm10,229 netMm10,237 netMm10,251 netMm10,291 netMm10,313 netMm10,439 netMm10,594 netMm10,629 netMm10,638 netMm10,779 netMm10,857 netMm10,889 netMm10,900 netMm10,909 netMm10,934 netMm10,949 netMm10,974 netMm10,980 netMm10,986 netMm10,993 netMm10,999 netMm10,1063 netMm10,1068 netMonDom5,98 netMonDom5,113 netMonDom5,229 netMonDom5,237 netMonDom5,251 netMonDom5,291 netMonDom5,313 netMonDom5,439 netMonDom5,594 netMonDom5,629 netMonDom5,638 netMonDom5,779 netMonDom5,857 netMonDom5,889 netMonDom5,900 netMonDom5,909 netMonDom5,934 netMonDom5,949 netMonDom5,974 netMonDom5,980 netMonDom5,986 netMonDom5,993 netMonDom5,999 netMonDom5,1063 netMonDom5,1068 refSeqComposite,8 refSeqComposite,22 refSeqComposite,72 refSeqComposite,110 refSeqComposite,120 refSeqComposite,143 refSeqComposite,192 refSeqComposite,203 refSeqComposite,231 refSeqComposite,257 refSeqComposite,265 refSeqComposite,273 refSeqComposite,301 refSeqComposite,365 refSeqComposite,469 refSeqComposite,493 refSeqComposite,575 refSeqComposite,594 refSeqComposite,657 refSeqComposite,667 refSeqComposite,707 refSeqComposite,719 refSeqComposite,805 refSeqComposite,830 refSeqComposite,863 refSeqComposite,883 refSeqComposite,915 refSeqComposite,957 refSeqComposite,973 refSeqComposite,996 refSeqComposite,1011 refSeqComposite,1128 refSeqComposite,1147 refSeqComposite,1173 refSeqComposite,1178 refSeqComposite,1278 refSeqComposite,1373 refSeqComposite,1475 refSeqComposite,1493 refSeqComposite,1633 refSeqComposite,1674 refSeqComposite,1724 refSeqComposite,1810 rmsk,7 rmsk,28 rmsk,137 rmsk,221 rmsk,332 rmsk,338 rmsk,369 rmsk,398 simpleRepeat,9 simpleRepeat,42 transMapEnsemblV5,5 transMapEnsemblV5,11 transMapEnsemblV5,43 transMapEnsemblV5,94 transMapEnsemblV5,174 transMapEnsemblV5,199 transMapEnsemblV5,366 transMapEnsemblV5,368 transMapEnsemblV5,392 transMapEnsemblV5,409 transMapEnsemblV5,435 transMapEnsemblV5,466 transMapEnsemblV5,482 transMapEnsemblV5,497 transMapEnsemblV5,554 transMapEnsemblV5,639 transMapEnsemblV5,688 transMapEnsemblV5,702 transMapEnsemblV5,709 transMapEnsemblV5,767 transMapEstV5,9 transMapEstV5,63 transMapEstV5,143 transMapEstV5,168 transMapEstV5,335 transMapEstV5,337 transMapEstV5,361 transMapEstV5,378 transMapEstV5,404 transMapEstV5,435 transMapEstV5,451 transMapEstV5,466 transMapEstV5,523 transMapEstV5,608 transMapEstV5,657 transMapEstV5,671 transMapEstV5,678 transMapEstV5,736 transMapRefSeqV5,10 transMapRefSeqV5,63 transMapRefSeqV5,143 transMapRefSeqV5,168 transMapRefSeqV5,335 transMapRefSeqV5,337 transMapRefSeqV5,361 transMapRefSeqV5,378 transMapRefSeqV5,404 transMapRefSeqV5,435 transMapRefSeqV5,451 transMapRefSeqV5,466 transMapRefSeqV5,523 transMapRefSeqV5,608 transMapRefSeqV5,657 transMapRefSeqV5,671 transMapRefSeqV5,678 transMapRefSeqV5,736 transMapRnaV5,10 transMapRnaV5,63 transMapRnaV5,143 transMapRnaV5,168 transMapRnaV5,335 transMapRnaV5,337 transMapRnaV5,361 transMapRnaV5,378 transMapRnaV5,404 transMapRnaV5,435 transMapRnaV5,451 transMapRnaV5,466 transMapRnaV5,523 transMapRnaV5,608 transMapRnaV5,657 transMapRnaV5,671 transMapRnaV5,678 transMapRnaV5,736 transMapV5,8 transMapV5,16 transMapV5,74 transMapV5,88 transMapV5,139 transMapV5,162 transMapV5,169 transMapV5,249 transMapV5,274 transMapV5,441 transMapV5,443 transMapV5,467 transMapV5,484 transMapV5,510 transMapV5,541 transMapV5,557 transMapV5,572 transMapV5,629 transMapV5,714 transMapV5,763 transMapV5,777 transMapV5,784 transMapV5,842 ucscToINSDC,11 ucscToRefSeq,6 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 windowmaskerSdust,10 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,187 xenoRefGene,200 xenoRefGene,268 xenoRefGene,295 xenoRefGene,380 annot unipOther,2 annotate HLTOGAannotvHg38v1,100 annotated HLTOGAannotvHg38v1,133 refSeqComposite,558 rmsk,67 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation HLTOGAannotvHg38v1,31 HLTOGAannotvHg38v1,48 HLTOGAannotvHg38v1,358 chainBosTau7,304 chainHg19,302 chainMm10,302 chainMonDom5,302 chainNetBosTau7,307 chainNetHg19,305 chainNetMm10,305 chainNetMonDom5,305 netBosTau7,304 netHg19,302 netMm10,302 netMonDom5,302 refSeqComposite,67 refSeqComposite,668 refSeqComposite,1117 refSeqComposite,1146 refSeqComposite,1192 rmsk,38 transMapEnsemblV5,609 transMapEstV5,578 transMapRefSeqV5,578 transMapRnaV5,578 transMapV5,684 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations HLTOGAannotvHg38v1,5 genscan,120 ncbiRefSeqOther,6 nestedRepeats,71 refSeqComposite,191 refSeqComposite,197 refSeqComposite,205 refSeqComposite,220 refSeqComposite,349 refSeqComposite,383 refSeqComposite,483 refSeqComposite,864 refSeqComposite,1471 refSeqComposite,1503 refSeqComposite,1539 transMapEnsemblV5,60 transMapEnsemblV5,542 transMapEnsemblV5,703 transMapEnsemblV5,711 transMapEstV5,511 transMapEstV5,672 transMapEstV5,680 transMapRefSeqV5,511 transMapRefSeqV5,672 transMapRefSeqV5,680 transMapRnaV5,511 transMapRnaV5,672 transMapRnaV5,680 transMapV5,76 transMapV5,617 transMapV5,778 transMapV5,786 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 xenoRefGene,188 another refSeqComposite,327 transMapV5,81 any mrna,262 refSeqComposite,274 refSeqComposite,1356 uniprot,660 uniprot,1146 uniprot,1250 api cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 refSeqComposite,1312 refSeqComposite,1366 transMapEnsemblV5,566 transMapEstV5,535 transMapRefSeqV5,535 transMapRnaV5,535 transMapV5,641 appending transMapEnsemblV5,399 transMapEstV5,368 transMapRefSeqV5,368 transMapRnaV5,368 transMapV5,474 apply mrna,134 approach uniprot,1531 appropriate refSeqComposite,775 xenoRefGene,112 apr HLTOGAannotvHg38v1,366 genscan,224 mrna,528 refSeqComposite,1742 xenoRefGene,312 apsects gc5BaseBw,51 arbitrary refSeqComposite,941 archive refSeqComposite,1708 uniprot,893 uniprot,1670 uniprot,1908 archives refSeqComposite,1347 refSeqComposite,1692 uniprot,1832 are HLTOGAannotvHg38v1,204 HLTOGAannotvHg38v1,277 augustusGene,27 chainBosTau7,22 chainBosTau7,41 chainBosTau7,54 chainBosTau7,144 chainBosTau7,214 chainBosTau7,225 chainBosTau7,327 chainBosTau7,396 chainBosTau7,417 chainBosTau7,424 chainBosTau7,507 chainBosTau7,698 chainHg19,21 chainHg19,40 chainHg19,53 chainHg19,142 chainHg19,212 chainHg19,223 chainHg19,324 chainHg19,393 chainHg19,414 chainHg19,421 chainHg19,504 chainHg19,695 chainMm10,21 chainMm10,40 chainMm10,53 chainMm10,142 chainMm10,212 chainMm10,223 chainMm10,324 chainMm10,393 chainMm10,414 chainMm10,421 chainMm10,504 chainMm10,695 chainMonDom5,21 chainMonDom5,40 chainMonDom5,53 chainMonDom5,142 chainMonDom5,212 chainMonDom5,223 chainMonDom5,324 chainMonDom5,393 chainMonDom5,414 chainMonDom5,421 chainMonDom5,504 chainMonDom5,695 chainNetBosTau7,25 chainNetBosTau7,44 chainNetBosTau7,57 chainNetBosTau7,147 chainNetBosTau7,217 chainNetBosTau7,228 chainNetBosTau7,330 chainNetBosTau7,399 chainNetBosTau7,420 chainNetBosTau7,427 chainNetBosTau7,510 chainNetBosTau7,701 chainNetHg19,24 chainNetHg19,43 chainNetHg19,56 chainNetHg19,145 chainNetHg19,215 chainNetHg19,226 chainNetHg19,327 chainNetHg19,396 chainNetHg19,417 chainNetHg19,424 chainNetHg19,507 chainNetHg19,698 chainNetMm10,24 chainNetMm10,43 chainNetMm10,56 chainNetMm10,145 chainNetMm10,215 chainNetMm10,226 chainNetMm10,327 chainNetMm10,396 chainNetMm10,417 chainNetMm10,424 chainNetMm10,507 chainNetMm10,698 chainNetMonDom5,24 chainNetMonDom5,43 chainNetMonDom5,56 chainNetMonDom5,145 chainNetMonDom5,215 chainNetMonDom5,226 chainNetMonDom5,327 chainNetMonDom5,396 chainNetMonDom5,417 chainNetMonDom5,424 chainNetMonDom5,507 chainNetMonDom5,698 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 gap,24 gap,69 genscan,25 genscan,160 gold,26 gold,84 gold,101 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 nestedRepeats,74 nestedRepeats,102 nestedRepeats,140 nestedRepeats,146 nestedRepeats,164 nestedRepeats,172 nestedRepeats,181 nestedRepeats,209 nestedRepeats,274 nestedRepeats,281 netBosTau7,22 netBosTau7,41 netBosTau7,54 netBosTau7,144 netBosTau7,214 netBosTau7,225 netBosTau7,327 netBosTau7,396 netBosTau7,417 netBosTau7,424 netBosTau7,507 netBosTau7,698 netHg19,21 netHg19,40 netHg19,53 netHg19,142 netHg19,212 netHg19,223 netHg19,324 netHg19,393 netHg19,414 netHg19,421 netHg19,504 netHg19,695 netMm10,21 netMm10,40 netMm10,53 netMm10,142 netMm10,212 netMm10,223 netMm10,324 netMm10,393 netMm10,414 netMm10,421 netMm10,504 netMm10,695 netMonDom5,21 netMonDom5,40 netMonDom5,53 netMonDom5,142 netMonDom5,212 netMonDom5,223 netMonDom5,324 netMonDom5,393 netMonDom5,414 netMonDom5,421 netMonDom5,504 netMonDom5,695 refSeqComposite,180 refSeqComposite,233 refSeqComposite,407 refSeqComposite,428 refSeqComposite,768 refSeqComposite,893 refSeqComposite,935 refSeqComposite,999 refSeqComposite,1026 refSeqComposite,1343 refSeqComposite,1377 refSeqComposite,1400 refSeqComposite,1478 rmsk,43 rmsk,288 rmsk,304 rmsk,312 simpleRepeat,49 transMapEnsemblV5,55 transMapEnsemblV5,73 transMapEnsemblV5,454 transMapEnsemblV5,461 transMapEnsemblV5,470 transMapEnsemblV5,504 transMapEnsemblV5,514 transMapEnsemblV5,543 transMapEnsemblV5,582 transMapEstV5,42 transMapEstV5,423 transMapEstV5,430 transMapEstV5,439 transMapEstV5,473 transMapEstV5,483 transMapEstV5,512 transMapEstV5,551 transMapRefSeqV5,42 transMapRefSeqV5,423 transMapRefSeqV5,430 transMapRefSeqV5,439 transMapRefSeqV5,473 transMapRefSeqV5,483 transMapRefSeqV5,512 transMapRefSeqV5,551 transMapRnaV5,42 transMapRnaV5,423 transMapRnaV5,430 transMapRnaV5,439 transMapRnaV5,473 transMapRnaV5,483 transMapRnaV5,512 transMapRnaV5,551 transMapV5,41 transMapV5,69 transMapV5,529 transMapV5,536 transMapV5,545 transMapV5,579 transMapV5,589 transMapV5,618 transMapV5,657 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoRefGene,40 xenoRefGene,105 xenoRefGene,203 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5BaseBw,37 arian chainBosTau7,950 chainHg19,947 chainMm10,947 chainMonDom5,947 chainNetBosTau7,953 chainNetHg19,950 chainNetMm10,950 chainNetMonDom5,950 nestedRepeats,305 netBosTau7,950 netHg19,947 netMm10,947 netMonDom5,947 rmsk,16 rmsk,328 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 arrows nestedRepeats,145 nestedRepeats,163 articles refSeqComposite,1105 as HLTOGAannotvHg38v1,9 HLTOGAannotvHg38v1,37 HLTOGAannotvHg38v1,42 HLTOGAannotvHg38v1,141 HLTOGAannotvHg38v1,199 HLTOGAannotvHg38v1,259 augustusGene,77 augustusGene,79 chainBosTau7,469 chainBosTau7,509 chainBosTau7,532 chainBosTau7,547 chainBosTau7,809 chainBosTau7,864 chainBosTau7,922 chainHg19,466 chainHg19,506 chainHg19,529 chainHg19,544 chainHg19,806 chainHg19,861 chainHg19,919 chainMm10,466 chainMm10,506 chainMm10,529 chainMm10,544 chainMm10,806 chainMm10,861 chainMm10,919 chainMonDom5,466 chainMonDom5,506 chainMonDom5,529 chainMonDom5,544 chainMonDom5,806 chainMonDom5,861 chainMonDom5,919 chainNetBosTau7,472 chainNetBosTau7,512 chainNetBosTau7,535 chainNetBosTau7,550 chainNetBosTau7,812 chainNetBosTau7,867 chainNetBosTau7,925 chainNetHg19,469 chainNetHg19,509 chainNetHg19,532 chainNetHg19,547 chainNetHg19,809 chainNetHg19,864 chainNetHg19,922 chainNetMm10,469 chainNetMm10,509 chainNetMm10,532 chainNetMm10,547 chainNetMm10,809 chainNetMm10,864 chainNetMm10,922 chainNetMonDom5,469 chainNetMonDom5,509 chainNetMonDom5,532 chainNetMonDom5,547 chainNetMonDom5,809 chainNetMonDom5,864 chainNetMonDom5,922 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 gap,71 genscan,35 genscan,37 microsat,21 nestedRepeats,125 netBosTau7,469 netBosTau7,509 netBosTau7,532 netBosTau7,547 netBosTau7,809 netBosTau7,864 netBosTau7,922 netHg19,466 netHg19,506 netHg19,529 netHg19,544 netHg19,806 netHg19,861 netHg19,919 netMm10,466 netMm10,506 netMm10,529 netMm10,544 netMm10,806 netMm10,861 netMm10,919 netMonDom5,466 netMonDom5,506 netMonDom5,529 netMonDom5,544 netMonDom5,806 netMonDom5,861 netMonDom5,919 refSeqComposite,414 refSeqComposite,506 refSeqComposite,526 refSeqComposite,539 refSeqComposite,626 refSeqComposite,894 refSeqComposite,1223 refSeqComposite,1405 refSeqComposite,1521 refSeqComposite,1641 rmsk,53 rmsk,55 transMapEnsemblV5,65 transMapEnsemblV5,188 transMapEnsemblV5,215 transMapEnsemblV5,227 transMapEnsemblV5,516 transMapEnsemblV5,627 transMapEstV5,157 transMapEstV5,184 transMapEstV5,196 transMapEstV5,485 transMapEstV5,596 transMapRefSeqV5,157 transMapRefSeqV5,184 transMapRefSeqV5,196 transMapRefSeqV5,485 transMapRefSeqV5,596 transMapRnaV5,157 transMapRnaV5,184 transMapRnaV5,196 transMapRnaV5,485 transMapRnaV5,596 transMapV5,263 transMapV5,290 transMapV5,302 transMapV5,591 transMapV5,702 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 windowmaskerSdust,18 ascii uniprot,1762 ask refSeqComposite,123 aspect refSeqComposite,709 assemblies augustusGene,196 augustusGene,237 chainBosTau7,326 chainBosTau7,589 chainHg19,323 chainHg19,586 chainMm10,323 chainMm10,586 chainMonDom5,323 chainMonDom5,586 chainNetBosTau7,329 chainNetBosTau7,592 chainNetHg19,326 chainNetHg19,589 chainNetMm10,326 chainNetMm10,589 chainNetMonDom5,326 chainNetMonDom5,589 gap,131 netBosTau7,326 netBosTau7,589 netHg19,323 netHg19,586 netMm10,323 netMm10,586 netMonDom5,323 netMonDom5,586 refSeqComposite,184 rmsk,107 transMapEnsemblV5,193 transMapEstV5,162 transMapRefSeqV5,162 transMapRnaV5,162 transMapV5,268 assembly HLTOGAannotvHg38v1,209 augustusGene,197 chainBosTau7,153 chainBosTau7,161 chainBosTau7,313 chainHg19,151 chainHg19,159 chainHg19,310 chainMm10,151 chainMm10,159 chainMm10,310 chainMonDom5,151 chainMonDom5,159 chainMonDom5,310 chainNetBosTau7,156 chainNetBosTau7,164 chainNetBosTau7,316 chainNetHg19,154 chainNetHg19,162 chainNetHg19,313 chainNetMm10,154 chainNetMm10,162 chainNetMm10,313 chainNetMonDom5,154 chainNetMonDom5,162 chainNetMonDom5,313 gap,20 gap,22 gap,29 gap,38 gap,46 gap,117 gold,1 gold,2 gold,22 gold,24 gold,31 gold,40 gold,45 netBosTau7,153 netBosTau7,161 netBosTau7,313 netHg19,151 netHg19,159 netHg19,310 netMm10,151 netMm10,159 netMm10,310 netMonDom5,151 netMonDom5,159 netMonDom5,310 refSeqComposite,371 refSeqComposite,479 transMapV5,106 transMapV5,124 transMapV5,135 ucscToINSDC,40 ucscToRefSeq,34 uniprot,445 uniprot,701 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 assessing refSeqComposite,653 assigned transMapEnsemblV5,462 transMapEstV5,431 transMapRefSeqV5,431 transMapRnaV5,431 transMapV5,537 associated cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 gc5BaseBw,34 refSeqComposite,1401 rmsk,224 simpleRepeat,51 transMapEnsemblV5,583 transMapEstV5,552 transMapRefSeqV5,552 transMapRnaV5,552 transMapV5,658 uniprot,787 associates ucscToINSDC,16 ucscToRefSeq,11 association refSeqComposite,685 astashyn refSeqComposite,1758 xenoRefGene,328 at HLTOGAannotvHg38v1,362 chainBosTau7,426 chainBosTau7,804 chainBosTau7,926 chainBosTau7,961 chainBosTau7,966 chainBosTau7,1007 chainHg19,423 chainHg19,801 chainHg19,923 chainHg19,958 chainHg19,963 chainHg19,1004 chainMm10,423 chainMm10,801 chainMm10,923 chainMm10,958 chainMm10,963 chainMm10,1004 chainMonDom5,423 chainMonDom5,801 chainMonDom5,923 chainMonDom5,958 chainMonDom5,963 chainMonDom5,1004 chainNetBosTau7,429 chainNetBosTau7,807 chainNetBosTau7,929 chainNetBosTau7,964 chainNetBosTau7,969 chainNetBosTau7,1010 chainNetHg19,426 chainNetHg19,804 chainNetHg19,926 chainNetHg19,961 chainNetHg19,966 chainNetHg19,1007 chainNetMm10,426 chainNetMm10,804 chainNetMm10,926 chainNetMm10,961 chainNetMm10,966 chainNetMm10,1007 chainNetMonDom5,426 chainNetMonDom5,804 chainNetMonDom5,926 chainNetMonDom5,961 chainNetMonDom5,966 chainNetMonDom5,1007 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 microsat,28 microsat,77 mrna,211 mrna,430 mrna,447 netBosTau7,426 netBosTau7,804 netBosTau7,926 netBosTau7,961 netBosTau7,966 netBosTau7,1007 netHg19,423 netHg19,801 netHg19,923 netHg19,958 netHg19,963 netHg19,1004 netMm10,423 netMm10,801 netMm10,923 netMm10,958 netMm10,963 netMm10,1004 netMonDom5,423 netMonDom5,801 netMonDom5,923 netMonDom5,958 netMonDom5,963 netMonDom5,1004 refSeqComposite,735 refSeqComposite,1050 refSeqComposite,1154 refSeqComposite,1279 refSeqComposite,1716 rmsk,243 rmsk,267 transMapEnsemblV5,295 transMapEnsemblV5,684 transMapEstV5,264 transMapEstV5,653 transMapRefSeqV5,264 transMapRefSeqV5,653 transMapRnaV5,264 transMapRnaV5,653 transMapV5,118 transMapV5,370 transMapV5,759 ucscToINSDC,3 uniprot,825 uniprot,1946 uniprot,1991 xenoRefGene,93 xenoRefGene,269 xenoRefGene,285 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 auml windowmaskerSdust,95 automated transMapEnsemblV5,539 transMapEstV5,508 transMapRefSeqV5,508 transMapRnaV5,508 transMapV5,614 uniprot,1468 uniprot,1727 automatically uniprot,1565 av uniprot,2015 available HLTOGAannotvHg38v1,329 augustusGene,239 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 nestedRepeats,259 nestedRepeats,276 refSeqComposite,181 refSeqComposite,277 refSeqComposite,476 refSeqComposite,569 refSeqComposite,654 refSeqComposite,1344 refSeqComposite,1596 rmsk,73 transMapEnsemblV5,189 transMapEnsemblV5,247 transMapEstV5,158 transMapEstV5,216 transMapRefSeqV5,158 transMapRefSeqV5,216 transMapRnaV5,158 transMapRnaV5,216 transMapV5,264 transMapV5,322 uniprot,881 uniprot,1660 uniprot,1981 windowmaskerSdust,40 average nestedRepeats,186 nestedRepeats,221 aw HLTOGAannotvHg38v1,349 aware uniprot,1456 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 axt chainBosTau7,610 chainBosTau7,617 chainHg19,607 chainHg19,614 chainMm10,607 chainMm10,614 chainMonDom5,607 chainMonDom5,614 chainNetBosTau7,613 chainNetBosTau7,620 chainNetHg19,610 chainNetHg19,617 chainNetMm10,610 chainNetMm10,617 chainNetMonDom5,610 chainNetMonDom5,617 netBosTau7,610 netBosTau7,617 netHg19,607 netHg19,614 netMm10,607 netMm10,614 netMonDom5,607 netMonDom5,614 axtchain chainBosTau7,622 chainBosTau7,709 chainBosTau7,957 chainHg19,619 chainHg19,706 chainHg19,954 chainMm10,619 chainMm10,706 chainMm10,954 chainMonDom5,619 chainMonDom5,706 chainMonDom5,954 chainNetBosTau7,625 chainNetBosTau7,712 chainNetBosTau7,960 chainNetHg19,622 chainNetHg19,709 chainNetHg19,957 chainNetMm10,622 chainNetMm10,709 chainNetMm10,957 chainNetMonDom5,622 chainNetMonDom5,709 chainNetMonDom5,957 netBosTau7,622 netBosTau7,709 netBosTau7,957 netHg19,619 netHg19,706 netHg19,954 netMm10,619 netMm10,706 netMm10,954 netMonDom5,619 netMonDom5,706 netMonDom5,954 b transMapEnsemblV5,720 transMapEnsemblV5,730 transMapEstV5,689 transMapEstV5,699 transMapRefSeqV5,689 transMapRefSeqV5,699 transMapRnaV5,689 transMapRnaV5,699 transMapV5,795 transMapV5,805 back chainBosTau7,602 chainHg19,599 chainMm10,599 chainMonDom5,599 chainNetBosTau7,605 chainNetHg19,602 chainNetMm10,602 chainNetMonDom5,602 netBosTau7,602 netHg19,599 netMm10,599 netMonDom5,599 baertsch augustusGene,290 chainBosTau7,995 chainBosTau7,1053 chainBosTau7,1099 chainHg19,992 chainHg19,1050 chainHg19,1096 chainMm10,992 chainMm10,1050 chainMm10,1096 chainMonDom5,992 chainMonDom5,1050 chainMonDom5,1096 chainNetBosTau7,998 chainNetBosTau7,1056 chainNetBosTau7,1102 chainNetHg19,995 chainNetHg19,1053 chainNetHg19,1099 chainNetMm10,995 chainNetMm10,1053 chainNetMm10,1099 chainNetMonDom5,995 chainNetMonDom5,1053 chainNetMonDom5,1099 netBosTau7,995 netBosTau7,1053 netBosTau7,1099 netHg19,992 netHg19,1050 netHg19,1096 netMm10,992 netMm10,1050 netMm10,1096 netMonDom5,992 netMonDom5,1050 netMonDom5,1096 transMapEnsemblV5,761 transMapEstV5,730 transMapRefSeqV5,730 transMapRnaV5,730 transMapV5,836 bairoch uniprot,2022 band cytoBandIdeo,2 base cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 mrna,359 mrna,413 mrna,421 mrna,433 refSeqComposite,1262 refSeqComposite,1270 refSeqComposite,1282 rmsk,217 rmsk,219 rmsk,222 xenoRefGene,252 xenoRefGene,260 xenoRefGene,272 base-level transMapEnsemblV5,321 transMapEstV5,290 transMapRefSeqV5,290 transMapRnaV5,290 transMapV5,396 based augustusGene,28 chainBosTau7,329 chainBosTau7,355 chainHg19,326 chainHg19,352 chainMm10,326 chainMm10,352 chainMonDom5,326 chainMonDom5,352 chainNetBosTau7,332 chainNetBosTau7,358 chainNetHg19,329 chainNetHg19,355 chainNetMm10,329 chainNetMm10,355 chainNetMonDom5,329 chainNetMonDom5,355 genscan,26 netBosTau7,329 netBosTau7,355 netHg19,326 netHg19,352 netMm10,326 netMm10,352 netMonDom5,326 netMonDom5,352 refSeqComposite,252 refSeqComposite,360 uniprot,60 uniprot,727 uniprot,1604 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 gap,140 gc5BaseBw,25 refSeqComposite,901 transMapV5,166 basis cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 uniprot,1570 baylor chainBosTau7,6 chainBosTau7,69 chainBosTau7,310 chainNetBosTau7,7 chainNetBosTau7,72 chainNetBosTau7,313 chainNetBosTau7Viewchain,5 chainNetBosTau7Viewnet,5 netBosTau7,6 netBosTau7,69 netBosTau7,310 bc149621.1 transMapEnsemblV5,459 transMapEstV5,428 transMapRefSeqV5,428 transMapRnaV5,428 transMapV5,534 bc149621.1-1 transMapEnsemblV5,465 transMapEnsemblV5,476 transMapEstV5,434 transMapEstV5,445 transMapRefSeqV5,434 transMapRefSeqV5,445 transMapRnaV5,434 transMapRnaV5,445 transMapV5,540 transMapV5,551 bc149621.1-1.1 transMapEnsemblV5,487 transMapEstV5,456 transMapRefSeqV5,456 transMapRnaV5,456 transMapV5,562 bc149621.1-2 transMapEnsemblV5,467 transMapEnsemblV5,489 transMapEstV5,436 transMapEstV5,458 transMapRefSeqV5,436 transMapRefSeqV5,458 transMapRnaV5,436 transMapRnaV5,458 transMapV5,542 transMapV5,564 bc149621.1-2.1 transMapEnsemblV5,496 transMapEstV5,465 transMapRefSeqV5,465 transMapRnaV5,465 transMapV5,571 bc149621.1-2.2 transMapEnsemblV5,498 transMapEstV5,467 transMapRefSeqV5,467 transMapRnaV5,467 transMapV5,573 be augustusGene,99 chainBosTau7,110 chainBosTau7,436 chainHg19,108 chainHg19,433 chainMm10,108 chainMm10,433 chainMonDom5,108 chainMonDom5,433 chainNetBosTau7,113 chainNetBosTau7,439 chainNetHg19,111 chainNetHg19,436 chainNetMm10,111 chainNetMm10,436 chainNetMonDom5,111 chainNetMonDom5,436 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 gc5BaseBw,41 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,220 mrna,251 mrna,269 mrna,279 mrna,328 mrna,372 nestedRepeats,269 nestedRepeats,291 netBosTau7,110 netBosTau7,436 netHg19,108 netHg19,433 netMm10,108 netMm10,433 netMonDom5,108 netMonDom5,433 refSeqComposite,304 refSeqComposite,729 refSeqComposite,939 refSeqComposite,970 refSeqComposite,1030 refSeqComposite,1107 refSeqComposite,1195 refSeqComposite,1299 refSeqComposite,1306 refSeqComposite,1322 refSeqComposite,1394 refSeqComposite,1454 refSeqComposite,1485 refSeqComposite,1505 refSeqComposite,1513 refSeqComposite,1587 refSeqComposite,1609 refSeqComposite,1679 refSeqComposite,1704 rmsk,278 rmsk,284 rmsk,298 simpleRepeat,44 transMapEnsemblV5,63 transMapEnsemblV5,110 transMapEnsemblV5,145 transMapEnsemblV5,527 transMapEnsemblV5,556 transMapEnsemblV5,611 transMapEnsemblV5,619 transMapEnsemblV5,642 transMapEnsemblV5,649 transMapEstV5,79 transMapEstV5,114 transMapEstV5,496 transMapEstV5,525 transMapEstV5,580 transMapEstV5,588 transMapEstV5,611 transMapEstV5,618 transMapRefSeqV5,79 transMapRefSeqV5,114 transMapRefSeqV5,496 transMapRefSeqV5,525 transMapRefSeqV5,580 transMapRefSeqV5,588 transMapRefSeqV5,611 transMapRefSeqV5,618 transMapRnaV5,79 transMapRnaV5,114 transMapRnaV5,496 transMapRnaV5,525 transMapRnaV5,580 transMapRnaV5,588 transMapRnaV5,611 transMapRnaV5,618 transMapV5,185 transMapV5,220 transMapV5,602 transMapV5,631 transMapV5,686 transMapV5,694 transMapV5,717 transMapV5,724 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoRefGene,88 because cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 uniprot,674 bed3 windowmaskerSdust,76 been chainBosTau7,577 chainHg19,574 chainMm10,574 chainMonDom5,574 chainNetBosTau7,580 chainNetHg19,577 chainNetMm10,577 chainNetMonDom5,577 nestedRepeats,89 netBosTau7,577 netHg19,574 netMm10,574 netMonDom5,574 refSeqComposite,639 refSeqComposite,677 refSeqComposite,687 refSeqComposite,702 rmsk,70 rmsk,109 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before chainBosTau7,911 chainHg19,908 chainMm10,908 chainMonDom5,908 chainNetBosTau7,914 chainNetHg19,911 chainNetMm10,911 chainNetMonDom5,911 netBosTau7,911 netHg19,908 netMm10,908 netMonDom5,908 uniprot,934 begin refSeqComposite,223 refSeqComposite,352 beginning refSeqComposite,1052 refSeqComposite,1650 beloow refSeqComposite,338 below chainBosTau7,685 chainHg19,682 chainMm10,682 chainMonDom5,682 chainNetBosTau7,688 chainNetHg19,685 chainNetMm10,685 chainNetMonDom5,685 genscan,154 genscan,168 nestedRepeats,68 netBosTau7,685 netHg19,682 netMm10,682 netMonDom5,682 refSeqComposite,1396 refSeqComposite,1533 rmsk,104 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benson microsat,102 microsat,112 microsat,114 mrna,464 mrna,492 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 best chainBosTau7,271 chainBosTau7,519 chainHg19,269 chainHg19,516 chainMm10,269 chainMm10,516 chainMonDom5,269 chainMonDom5,516 chainNetBosTau7,274 chainNetBosTau7,522 chainNetHg19,272 chainNetHg19,519 chainNetMm10,272 chainNetMm10,519 chainNetMonDom5,272 chainNetMonDom5,519 mrna,428 netBosTau7,271 netBosTau7,519 netHg19,269 netHg19,516 netMm10,269 netMm10,516 netMonDom5,269 netMonDom5,516 refSeqComposite,1277 transMapEnsemblV5,242 transMapEstV5,211 transMapRefSeqV5,211 transMapRnaV5,211 transMapV5,67 transMapV5,317 uniprot,1074 uniprot,1415 xenoRefGene,267 beta uniprot,364 better mrna,55 between HLTOGAannotvHg38v1,66 chainBosTau7,52 chainBosTau7,627 chainBosTau7,858 chainHg19,51 chainHg19,624 chainHg19,855 chainMm10,51 chainMm10,624 chainMm10,855 chainMonDom5,51 chainMonDom5,624 chainMonDom5,855 chainNetBosTau7,55 chainNetBosTau7,630 chainNetBosTau7,861 chainNetHg19,54 chainNetHg19,627 chainNetHg19,858 chainNetMm10,54 chainNetMm10,627 chainNetMm10,858 chainNetMonDom5,54 chainNetMonDom5,627 chainNetMonDom5,858 gap,127 gold,98 gold,103 mrna,18 ncbiRefSeqGenomicDiff,4 netBosTau7,52 netBosTau7,627 netBosTau7,858 netHg19,51 netHg19,624 netHg19,855 netMm10,51 netMm10,624 netMm10,855 netMonDom5,51 netMonDom5,624 netMonDom5,855 refSeqComposite,65 refSeqComposite,462 refSeqComposite,878 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed refSeqComposite,1380 refSeqComposite,1391 refSeqComposite,1481 uniprot,1736 bigbedtobed refSeqComposite,1510 refSeqComposite,1550 transMapEnsemblV5,616 transMapEnsemblV5,661 transMapEstV5,585 transMapEstV5,630 transMapRefSeqV5,585 transMapRefSeqV5,630 transMapRnaV5,585 transMapRnaV5,630 transMapV5,691 transMapV5,736 uniprot,1767 uniprot,1812 bigpsl transMapEnsemblV5,546 transMapEstV5,515 transMapRefSeqV5,515 transMapRnaV5,515 transMapV5,621 bin refSeqComposite,1436 refSeqComposite,1466 binaries transMapEnsemblV5,640 transMapEstV5,609 transMapRefSeqV5,609 transMapRnaV5,609 transMapV5,715 uniprot,1791 binary cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 refSeqComposite,1524 transMapEnsemblV5,630 transMapEstV5,599 transMapRefSeqV5,599 transMapRnaV5,599 transMapV5,705 uniprot,1781 biocomput chainBosTau7,1046 chainHg19,1043 chainMm10,1043 chainMonDom5,1043 chainNetBosTau7,1049 chainNetHg19,1046 chainNetMm10,1046 chainNetMonDom5,1046 netBosTau7,1046 netHg19,1043 netMm10,1043 netMonDom5,1043 bioinformatics augustusGene,307 augustusGene,332 transMapEnsemblV5,778 transMapEstV5,747 transMapRefSeqV5,747 transMapRnaV5,747 transMapV5,853 windowmaskerSdust,106 biol cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 genscan,222 transMapEnsemblV5,813 transMapEstV5,782 transMapRefSeqV5,782 transMapRnaV5,782 transMapV5,888 biological uniprot,320 biology genscan,200 birds HLTOGAannotvHg38v1,60 augustusGene,203 black gap,72 gap,111 blast uniprot,949 uniprot,1084 uniprot,1115 blast-like mrna,522 refSeqComposite,1736 xenoRefGene,306 blastz chainBosTau7,923 chainBosTau7,1110 chainHg19,920 chainHg19,1107 chainMm10,920 chainMm10,1107 chainMonDom5,920 chainMonDom5,1107 chainNetBosTau7,926 chainNetBosTau7,1113 chainNetHg19,923 chainNetHg19,1110 chainNetMm10,923 chainNetMm10,1110 chainNetMonDom5,923 chainNetMonDom5,1110 netBosTau7,923 netBosTau7,1110 netHg19,920 netHg19,1107 netMm10,920 netMm10,1107 netMonDom5,920 netMonDom5,1107 transMapEnsemblV5,78 transMapEnsemblV5,196 transMapEstV5,47 transMapEstV5,165 transMapRefSeqV5,47 transMapRefSeqV5,165 transMapRnaV5,47 transMapRnaV5,165 transMapV5,48 transMapV5,144 transMapV5,271 blat mrna,398 mrna,520 refSeqComposite,1238 refSeqComposite,1734 transMapEnsemblV5,167 transMapEstV5,136 transMapRefSeqV5,136 transMapRnaV5,136 transMapV5,126 transMapV5,150 transMapV5,157 transMapV5,242 xenoRefGene,228 blat--the xenoRefGene,305 blocks chainBosTau7,45 chainBosTau7,650 chainBosTau7,671 chainHg19,44 chainHg19,647 chainHg19,668 chainMm10,44 chainMm10,647 chainMm10,668 chainMonDom5,44 chainMonDom5,647 chainMonDom5,668 chainNetBosTau7,48 chainNetBosTau7,653 chainNetBosTau7,674 chainNetHg19,47 chainNetHg19,650 chainNetHg19,671 chainNetMm10,47 chainNetMm10,650 chainNetMm10,671 chainNetMonDom5,47 chainNetMonDom5,650 chainNetMonDom5,671 gold,108 gold,135 netBosTau7,45 netBosTau7,650 netBosTau7,671 netHg19,44 netHg19,647 netHg19,668 netMm10,44 netMm10,647 netMm10,668 netMonDom5,44 netMonDom5,647 netMonDom5,668 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 blumer HLTOGAannotvHg38v1,344 bm HLTOGAannotvHg38v1,335 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 bostau7 chainBosTau7,8 chainBosTau7,71 chainBosTau7,312 chainNetBosTau7,9 chainNetBosTau7,74 chainNetBosTau7,315 chainNetBosTau7Viewchain,7 chainNetBosTau7Viewnet,7 netBosTau7,8 netBosTau7,71 netBosTau7,312 both chainBosTau7,98 chainBosTau7,119 chainBosTau7,173 chainBosTau7,901 chainHg19,96 chainHg19,117 chainHg19,171 chainHg19,898 chainMm10,96 chainMm10,117 chainMm10,171 chainMm10,898 chainMonDom5,96 chainMonDom5,117 chainMonDom5,171 chainMonDom5,898 chainNetBosTau7,101 chainNetBosTau7,122 chainNetBosTau7,176 chainNetBosTau7,904 chainNetHg19,99 chainNetHg19,120 chainNetHg19,174 chainNetHg19,901 chainNetMm10,99 chainNetMm10,120 chainNetMm10,174 chainNetMm10,901 chainNetMonDom5,99 chainNetMonDom5,120 chainNetMonDom5,174 chainNetMonDom5,901 netBosTau7,98 netBosTau7,119 netBosTau7,173 netBosTau7,901 netHg19,96 netHg19,117 netHg19,171 netHg19,898 netMm10,96 netMm10,117 netMm10,171 netMm10,898 netMonDom5,96 netMonDom5,117 netMonDom5,171 netMonDom5,898 transMapEnsemblV5,512 transMapEstV5,481 transMapRefSeqV5,481 transMapRnaV5,481 transMapV5,587 uniprot,675 uniprot,1616 xenoRefGene,126 xenoRefGene,197 bothgap chainBosTau7,752 chainHg19,749 chainMm10,749 chainMonDom5,749 chainNetBosTau7,755 chainNetHg19,752 chainNetMm10,752 chainNetMonDom5,752 netBosTau7,752 netHg19,749 netMm10,749 netMonDom5,749 boundaries HLTOGAannotvHg38v1,111 gold,83 box chainBosTau7,379 chainBosTau7,461 chainHg19,376 chainHg19,458 chainMm10,376 chainMm10,458 chainMonDom5,376 chainMonDom5,458 chainNetBosTau7,382 chainNetBosTau7,464 chainNetHg19,379 chainNetHg19,461 chainNetMm10,379 chainNetMm10,461 chainNetMonDom5,379 chainNetMonDom5,461 gap,112 mrna,154 mrna,165 mrna,205 netBosTau7,379 netBosTau7,461 netHg19,376 netHg19,458 netMm10,376 netMm10,458 netMonDom5,376 netMonDom5,458 xenoRefGene,216 boxes chainBosTau7,125 chainBosTau7,135 chainBosTau7,450 chainHg19,123 chainHg19,133 chainHg19,447 chainMm10,123 chainMm10,133 chainMm10,447 chainMonDom5,123 chainMonDom5,133 chainMonDom5,447 chainNetBosTau7,128 chainNetBosTau7,138 chainNetBosTau7,453 chainNetHg19,126 chainNetHg19,136 chainNetHg19,450 chainNetMm10,126 chainNetMm10,136 chainNetMm10,450 chainNetMonDom5,126 chainNetMonDom5,136 chainNetMonDom5,450 gap,73 mrna,125 nestedRepeats,126 netBosTau7,125 netBosTau7,135 netBosTau7,450 netHg19,123 netHg19,133 netHg19,447 netMm10,123 netMm10,133 netMm10,447 netMonDom5,123 netMonDom5,133 netMonDom5,447 refSeqComposite,166 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 refSeqComposite,946 branch transMapEnsemblV5,220 transMapEstV5,189 transMapRefSeqV5,189 transMapRnaV5,189 transMapV5,295 branch-point augustusGene,55 brejov transMapEnsemblV5,718 transMapEstV5,687 transMapRefSeqV5,687 transMapRnaV5,687 transMapV5,793 brian uniprot,1959 bridge gold,133 bridged gap,101 briefly uniprot,778 broad chainMonDom5,6 chainMonDom5,68 chainMonDom5,308 chainNetMonDom5,7 chainNetMonDom5,71 chainNetMonDom5,311 chainNetMonDom5Viewchain,5 chainNetMonDom5Viewnet,5 netMonDom5,6 netMonDom5,68 netMonDom5,308 brown gold,93 gold,107 refSeqComposite,1752 xenoRefGene,322 browser chainBosTau7,981 chainHg19,978 chainMm10,978 chainMonDom5,978 chainNetBosTau7,984 chainNetHg19,981 chainNetMm10,981 chainNetMonDom5,981 cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 mrna,172 mrna,296 mrna,313 nestedRepeats,243 netBosTau7,981 netHg19,978 netMm10,978 netMonDom5,978 refSeqComposite,1125 refSeqComposite,1187 refSeqComposite,1314 refSeqComposite,1451 transMapEnsemblV5,37 transMapEnsemblV5,165 transMapEnsemblV5,533 transMapEstV5,35 transMapEstV5,134 transMapEstV5,502 transMapRefSeqV5,35 transMapRefSeqV5,134 transMapRefSeqV5,502 transMapRnaV5,35 transMapRnaV5,134 transMapRnaV5,502 transMapV5,34 transMapV5,240 transMapV5,608 ucscToINSDC,19 ucscToRefSeq,14 uniprot,1544 uniprot,1721 browsing uniprot,1662 btau_4.6.1 chainBosTau7,7 chainBosTau7,70 chainBosTau7,311 chainNetBosTau7,8 chainNetBosTau7,73 chainNetBosTau7,314 chainNetBosTau7Viewchain,6 chainNetBosTau7Viewnet,6 netBosTau7,7 netBosTau7,70 netBosTau7,311 build refSeqComposite,300 uniprot,1552 builds transMapEnsemblV5,54 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but HLTOGAannotvHg38v1,194 HLTOGAannotvHg38v1,249 chainBosTau7,552 chainHg19,549 chainMm10,549 chainMonDom5,549 chainNetBosTau7,555 chainNetHg19,552 chainNetMm10,552 chainNetMonDom5,552 netBosTau7,552 netHg19,549 netMm10,549 netMonDom5,549 refSeqComposite,427 refSeqComposite,899 refSeqComposite,1032 refSeqComposite,1452 rmsk,311 uniprot,638 uniprot,1047 button chainBosTau7,350 chainHg19,347 chainMm10,347 chainMonDom5,347 chainNetBosTau7,353 chainNetHg19,350 chainNetMm10,350 chainNetMonDom5,350 netBosTau7,350 netHg19,347 netMm10,347 netMonDom5,347 by HLTOGAannotvHg38v1,319 augustusGene,147 augustusGene,266 augustusGene,282 chainBosTau7,112 chainBosTau7,128 chainBosTau7,320 chainBosTau7,383 chainBosTau7,420 chainBosTau7,438 chainBosTau7,818 chainBosTau7,930 chainBosTau7,949 chainBosTau7,969 chainBosTau7,993 chainBosTau7,1014 chainHg19,110 chainHg19,126 chainHg19,317 chainHg19,380 chainHg19,417 chainHg19,435 chainHg19,815 chainHg19,927 chainHg19,946 chainHg19,966 chainHg19,990 chainHg19,1011 chainMm10,110 chainMm10,126 chainMm10,317 chainMm10,380 chainMm10,417 chainMm10,435 chainMm10,815 chainMm10,927 chainMm10,946 chainMm10,966 chainMm10,990 chainMm10,1011 chainMonDom5,110 chainMonDom5,126 chainMonDom5,317 chainMonDom5,380 chainMonDom5,417 chainMonDom5,435 chainMonDom5,815 chainMonDom5,927 chainMonDom5,946 chainMonDom5,966 chainMonDom5,990 chainMonDom5,1011 chainNetBosTau7,115 chainNetBosTau7,131 chainNetBosTau7,323 chainNetBosTau7,386 chainNetBosTau7,423 chainNetBosTau7,441 chainNetBosTau7,821 chainNetBosTau7,933 chainNetBosTau7,952 chainNetBosTau7,972 chainNetBosTau7,996 chainNetBosTau7,1017 chainNetHg19,113 chainNetHg19,129 chainNetHg19,320 chainNetHg19,383 chainNetHg19,420 chainNetHg19,438 chainNetHg19,818 chainNetHg19,930 chainNetHg19,949 chainNetHg19,969 chainNetHg19,993 chainNetHg19,1014 chainNetMm10,113 chainNetMm10,129 chainNetMm10,320 chainNetMm10,383 chainNetMm10,420 chainNetMm10,438 chainNetMm10,818 chainNetMm10,930 chainNetMm10,949 chainNetMm10,969 chainNetMm10,993 chainNetMm10,1014 chainNetMonDom5,113 chainNetMonDom5,129 chainNetMonDom5,320 chainNetMonDom5,383 chainNetMonDom5,420 chainNetMonDom5,438 chainNetMonDom5,818 chainNetMonDom5,930 chainNetMonDom5,949 chainNetMonDom5,969 chainNetMonDom5,993 chainNetMonDom5,1014 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 gap,94 gc5BaseBw,81 genscan,20 genscan,88 genscan,121 gold,86 microsat,110 mrna,214 mrna,460 nestedRepeats,8 nestedRepeats,91 nestedRepeats,129 netBosTau7,112 netBosTau7,128 netBosTau7,320 netBosTau7,383 netBosTau7,420 netBosTau7,438 netBosTau7,818 netBosTau7,930 netBosTau7,949 netBosTau7,969 netBosTau7,993 netBosTau7,1014 netHg19,110 netHg19,126 netHg19,317 netHg19,380 netHg19,417 netHg19,435 netHg19,815 netHg19,927 netHg19,946 netHg19,966 netHg19,990 netHg19,1011 netMm10,110 netMm10,126 netMm10,317 netMm10,380 netMm10,417 netMm10,435 netMm10,815 netMm10,927 netMm10,946 netMm10,966 netMm10,990 netMm10,1011 netMonDom5,110 netMonDom5,126 netMonDom5,317 netMonDom5,380 netMonDom5,417 netMonDom5,435 netMonDom5,815 netMonDom5,927 netMonDom5,946 netMonDom5,966 netMonDom5,990 netMonDom5,1011 refSeqComposite,39 refSeqComposite,50 refSeqComposite,70 refSeqComposite,207 refSeqComposite,372 refSeqComposite,385 refSeqComposite,446 refSeqComposite,559 refSeqComposite,628 refSeqComposite,641 refSeqComposite,645 refSeqComposite,689 refSeqComposite,765 refSeqComposite,770 refSeqComposite,847 refSeqComposite,865 refSeqComposite,1204 refSeqComposite,1721 refSeqComposite,1726 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 transMapEnsemblV5,23 transMapEnsemblV5,229 transMapEnsemblV5,398 transMapEnsemblV5,681 transMapEnsemblV5,699 transMapEnsemblV5,705 transMapEnsemblV5,743 transMapEstV5,21 transMapEstV5,198 transMapEstV5,367 transMapEstV5,650 transMapEstV5,668 transMapEstV5,674 transMapEstV5,712 transMapRefSeqV5,21 transMapRefSeqV5,198 transMapRefSeqV5,367 transMapRefSeqV5,650 transMapRefSeqV5,668 transMapRefSeqV5,674 transMapRefSeqV5,712 transMapRnaV5,21 transMapRnaV5,198 transMapRnaV5,367 transMapRnaV5,650 transMapRnaV5,668 transMapRnaV5,674 transMapRnaV5,712 transMapV5,20 transMapV5,304 transMapV5,473 transMapV5,756 transMapV5,774 transMapV5,780 transMapV5,818 ucscToINSDC,50 ucscToRefSeq,44 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 windowmaskerSdust,6 windowmaskerSdust,20 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,189 xenoRefGene,195 xenoRefGene,292 xenoRefGene,297 c HLTOGAannotvHg38v1,337 cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5BaseBw,23 genscan,181 genscan,208 refSeqComposite,917 refSeqComposite,958 refSeqComposite,985 refSeqComposite,1044 refSeqComposite,1071 refSeqComposite,1083 transMapEnsemblV5,728 transMapEnsemblV5,734 transMapEstV5,697 transMapEstV5,703 transMapRefSeqV5,697 transMapRefSeqV5,703 transMapRnaV5,697 transMapRnaV5,703 transMapV5,803 transMapV5,809 windowmaskerSdust,30 c-114100-125-31 chainBosTau7,680 chainHg19,677 chainMm10,677 chainNetBosTau7,683 chainNetHg19,680 chainNetMm10,680 netBosTau7,680 netHg19,677 netMm10,677 c-90100-100-25 chainMonDom5,677 chainNetMonDom5,680 netMonDom5,677 caenorhabditis augustusGene,212 calculated cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 california chainBosTau7,965 chainBosTau7,1011 chainHg19,962 chainHg19,1008 chainMm10,962 chainMm10,1008 chainMonDom5,962 chainMonDom5,1008 chainNetBosTau7,968 chainNetBosTau7,1014 chainNetHg19,965 chainNetHg19,1011 chainNetMm10,965 chainNetMm10,1011 chainNetMonDom5,965 chainNetMonDom5,1011 netBosTau7,965 netBosTau7,1011 netHg19,962 netHg19,1008 netMm10,962 netMm10,1008 netMonDom5,962 netMonDom5,1008 can augustusGene,98 chainBosTau7,93 chainBosTau7,109 chainHg19,91 chainHg19,107 chainMm10,91 chainMm10,107 chainMonDom5,91 chainMonDom5,107 chainNetBosTau7,96 chainNetBosTau7,112 chainNetHg19,94 chainNetHg19,110 chainNetMm10,94 chainNetMm10,110 chainNetMonDom5,94 chainNetMonDom5,110 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 mrna,67 mrna,198 netBosTau7,93 netBosTau7,109 netHg19,91 netHg19,107 netMm10,91 netMm10,107 netMonDom5,91 netMonDom5,107 refSeqComposite,287 refSeqComposite,728 refSeqComposite,1106 refSeqComposite,1194 refSeqComposite,1298 refSeqComposite,1305 refSeqComposite,1320 refSeqComposite,1353 refSeqComposite,1393 refSeqComposite,1453 refSeqComposite,1461 refSeqComposite,1484 refSeqComposite,1504 refSeqComposite,1512 refSeqComposite,1565 refSeqComposite,1585 refSeqComposite,1608 refSeqComposite,1678 refSeqComposite,1703 rmsk,116 simpleRepeat,35 transMapEnsemblV5,526 transMapEnsemblV5,555 transMapEnsemblV5,610 transMapEnsemblV5,618 transMapEnsemblV5,641 transMapEnsemblV5,647 transMapEstV5,495 transMapEstV5,524 transMapEstV5,579 transMapEstV5,587 transMapEstV5,610 transMapEstV5,616 transMapRefSeqV5,495 transMapRefSeqV5,524 transMapRefSeqV5,579 transMapRefSeqV5,587 transMapRefSeqV5,610 transMapRefSeqV5,616 transMapRnaV5,495 transMapRnaV5,524 transMapRnaV5,579 transMapRnaV5,587 transMapRnaV5,610 transMapRnaV5,616 transMapV5,601 transMapV5,630 transMapV5,685 transMapV5,693 transMapV5,716 transMapV5,722 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoRefGene,87 cannot uniprot,1269 cases chainBosTau7,195 chainBosTau7,407 chainHg19,193 chainHg19,404 chainMm10,193 chainMm10,404 chainMonDom5,193 chainMonDom5,404 chainNetBosTau7,198 chainNetBosTau7,410 chainNetHg19,196 chainNetHg19,407 chainNetMm10,196 chainNetMm10,407 chainNetMonDom5,196 chainNetMonDom5,407 netBosTau7,195 netBosTau7,407 netHg19,193 netHg19,404 netMm10,193 netMm10,404 netMonDom5,193 netMonDom5,404 uniprot,757 uniprot,1183 uniprot,1452 cat uniprot,1936 categorized chainBosTau7,508 chainHg19,505 chainMm10,505 chainMonDom5,505 chainNetBosTau7,511 chainNetHg19,508 chainNetMm10,508 chainNetMonDom5,508 netBosTau7,508 netHg19,505 netMm10,505 netMonDom5,505 cauldron chainBosTau7,1063 chainHg19,1060 chainMm10,1060 chainMonDom5,1060 chainNetBosTau7,1066 chainNetHg19,1063 chainNetMm10,1063 chainNetMonDom5,1063 netBosTau7,1063 netHg19,1060 netMm10,1060 netMonDom5,1060 cause chainBosTau7,490 chainHg19,487 chainMm10,487 chainMonDom5,487 chainNetBosTau7,493 chainNetHg19,490 chainNetMm10,490 chainNetMonDom5,490 netBosTau7,490 netHg19,487 netMm10,487 netMonDom5,487 caused chainBosTau7,111 chainHg19,109 chainMm10,109 chainMonDom5,109 chainNetBosTau7,114 chainNetHg19,112 chainNetMm10,112 chainNetMonDom5,112 netBosTau7,111 netHg19,109 netMm10,109 netMonDom5,109 cavanaugh mrna,466 cb transMapEnsemblV5,794 transMapEstV5,763 transMapRefSeqV5,763 transMapRnaV5,763 transMapV5,869 cdna augustusGene,299 refSeqComposite,267 refSeqComposite,363 transMapEnsemblV5,391 transMapEnsemblV5,687 transMapEnsemblV5,770 transMapEstV5,360 transMapEstV5,656 transMapEstV5,739 transMapRefSeqV5,360 transMapRefSeqV5,656 transMapRefSeqV5,739 transMapRnaV5,360 transMapRnaV5,656 transMapRnaV5,739 transMapV5,15 transMapV5,466 transMapV5,762 transMapV5,845 cdnas transMapEnsemblV5,125 transMapEstV5,94 transMapRefSeqV5,94 transMapRnaV5,94 transMapV5,200 cds HLTOGAannotvHg38v1,148 HLTOGAannotvHg38v1,170 HLTOGAannotvHg38v1,182 HLTOGAannotvHg38v1,203 HLTOGAannotvHg38v1,217 HLTOGAannotvHg38v1,229 HLTOGAannotvHg38v1,248 cell uniprot,563 cerevisiae augustusGene,222 cersim1 refSeqComposite,1554 refSeqComposite,1618 transMapEnsemblV5,205 transMapEnsemblV5,665 transMapEstV5,174 transMapEstV5,634 transMapRefSeqV5,174 transMapRefSeqV5,634 transMapRnaV5,174 transMapRnaV5,634 transMapV5,280 transMapV5,740 uniprot,1816 cersim1.ensembl.transmapv4.bigpsl transMapEnsemblV5,593 transMapEstV5,562 transMapRefSeqV5,562 transMapRnaV5,562 cersim1.ensembl.transmapv5.bigpsl transMapV5,668 cersim1.est.transmapv4.bigpsl transMapEnsemblV5,602 transMapEstV5,571 transMapRefSeqV5,571 transMapRnaV5,571 cersim1.est.transmapv5.bigpsl transMapV5,677 cersim1.fa windowmaskerSdust,62 windowmaskerSdust,71 cersim1.refseq.transmapv4.bigpsl transMapEnsemblV5,596 transMapEnsemblV5,668 transMapEstV5,565 transMapEstV5,637 transMapRefSeqV5,565 transMapRefSeqV5,637 transMapRnaV5,565 transMapRnaV5,637 cersim1.refseq.transmapv5.bigpsl transMapV5,671 transMapV5,743 cersim1.rna.transmapv4.bigpsl transMapEnsemblV5,599 transMapEstV5,568 transMapRefSeqV5,568 transMapRnaV5,568 cersim1.rna.transmapv5.bigpsl transMapV5,674 certain nestedRepeats,294 rmsk,301 cesar HLTOGAannotvHg38v1,102 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 chain chainBosTau7,2 chainBosTau7,28 chainBosTau7,58 chainBosTau7,61 chainBosTau7,122 chainBosTau7,275 chainBosTau7,318 chainBosTau7,413 chainBosTau7,468 chainBosTau7,572 chainBosTau7,778 chainBosTau7,821 chainBosTau7,832 chainBosTau7,840 chainBosTau7,845 chainBosTau7,868 chainBosTau7,877 chainHg19,2 chainHg19,27 chainHg19,57 chainHg19,60 chainHg19,120 chainHg19,273 chainHg19,315 chainHg19,410 chainHg19,465 chainHg19,569 chainHg19,775 chainHg19,818 chainHg19,829 chainHg19,837 chainHg19,842 chainHg19,865 chainHg19,874 chainMm10,2 chainMm10,27 chainMm10,57 chainMm10,60 chainMm10,120 chainMm10,273 chainMm10,315 chainMm10,410 chainMm10,465 chainMm10,569 chainMm10,775 chainMm10,818 chainMm10,829 chainMm10,837 chainMm10,842 chainMm10,865 chainMm10,874 chainMonDom5,2 chainMonDom5,27 chainMonDom5,57 chainMonDom5,60 chainMonDom5,120 chainMonDom5,273 chainMonDom5,315 chainMonDom5,410 chainMonDom5,465 chainMonDom5,569 chainMonDom5,775 chainMonDom5,818 chainMonDom5,829 chainMonDom5,837 chainMonDom5,842 chainMonDom5,865 chainMonDom5,874 chainNetBosTau7,2 chainNetBosTau7,10 chainNetBosTau7,31 chainNetBosTau7,61 chainNetBosTau7,64 chainNetBosTau7,125 chainNetBosTau7,278 chainNetBosTau7,321 chainNetBosTau7,416 chainNetBosTau7,471 chainNetBosTau7,575 chainNetBosTau7,781 chainNetBosTau7,824 chainNetBosTau7,835 chainNetBosTau7,843 chainNetBosTau7,848 chainNetBosTau7,871 chainNetBosTau7,880 chainNetBosTau7Viewchain,1 chainNetBosTau7Viewchain,8 chainNetBosTau7Viewnet,8 chainNetHg19,2 chainNetHg19,9 chainNetHg19,30 chainNetHg19,60 chainNetHg19,63 chainNetHg19,123 chainNetHg19,276 chainNetHg19,318 chainNetHg19,413 chainNetHg19,468 chainNetHg19,572 chainNetHg19,778 chainNetHg19,821 chainNetHg19,832 chainNetHg19,840 chainNetHg19,845 chainNetHg19,868 chainNetHg19,877 chainNetHg19Viewchain,1 chainNetHg19Viewchain,7 chainNetHg19Viewnet,7 chainNetMm10,2 chainNetMm10,9 chainNetMm10,30 chainNetMm10,60 chainNetMm10,63 chainNetMm10,123 chainNetMm10,276 chainNetMm10,318 chainNetMm10,413 chainNetMm10,468 chainNetMm10,572 chainNetMm10,778 chainNetMm10,821 chainNetMm10,832 chainNetMm10,840 chainNetMm10,845 chainNetMm10,868 chainNetMm10,877 chainNetMm10Viewchain,1 chainNetMm10Viewchain,7 chainNetMm10Viewnet,7 chainNetMonDom5,2 chainNetMonDom5,9 chainNetMonDom5,30 chainNetMonDom5,60 chainNetMonDom5,63 chainNetMonDom5,123 chainNetMonDom5,276 chainNetMonDom5,318 chainNetMonDom5,413 chainNetMonDom5,468 chainNetMonDom5,572 chainNetMonDom5,778 chainNetMonDom5,821 chainNetMonDom5,832 chainNetMonDom5,840 chainNetMonDom5,845 chainNetMonDom5,868 chainNetMonDom5,877 chainNetMonDom5Viewchain,1 chainNetMonDom5Viewchain,7 chainNetMonDom5Viewnet,7 netBosTau7,28 netBosTau7,58 netBosTau7,61 netBosTau7,122 netBosTau7,275 netBosTau7,318 netBosTau7,413 netBosTau7,468 netBosTau7,572 netBosTau7,778 netBosTau7,821 netBosTau7,832 netBosTau7,840 netBosTau7,845 netBosTau7,868 netBosTau7,877 netHg19,27 netHg19,57 netHg19,60 netHg19,120 netHg19,273 netHg19,315 netHg19,410 netHg19,465 netHg19,569 netHg19,775 netHg19,818 netHg19,829 netHg19,837 netHg19,842 netHg19,865 netHg19,874 netMm10,27 netMm10,57 netMm10,60 netMm10,120 netMm10,273 netMm10,315 netMm10,410 netMm10,465 netMm10,569 netMm10,775 netMm10,818 netMm10,829 netMm10,837 netMm10,842 netMm10,865 netMm10,874 netMonDom5,27 netMonDom5,57 netMonDom5,60 netMonDom5,120 netMonDom5,273 netMonDom5,315 netMonDom5,410 netMonDom5,465 netMonDom5,569 netMonDom5,775 netMonDom5,818 netMonDom5,829 netMonDom5,837 netMonDom5,842 netMonDom5,865 netMonDom5,874 transMapV5,138 uniprot,290 chained chainBosTau7,9 chainHg19,8 chainMm10,8 chainMonDom5,8 chainnet chainBosTau7,795 chainBosTau7,1000 chainHg19,792 chainHg19,997 chainMm10,792 chainMm10,997 chainMonDom5,792 chainMonDom5,997 chainNetBosTau7,798 chainNetBosTau7,1003 chainNetHg19,795 chainNetHg19,1000 chainNetMm10,795 chainNetMm10,1000 chainNetMonDom5,795 chainNetMonDom5,1000 netBosTau7,795 netBosTau7,1000 netHg19,792 netHg19,997 netMm10,792 netMm10,997 netMonDom5,792 netMonDom5,997 chains chainBosTau7,198 chainBosTau7,210 chainBosTau7,221 chainBosTau7,323 chainBosTau7,362 chainBosTau7,395 chainBosTau7,400 chainBosTau7,422 chainBosTau7,434 chainBosTau7,441 chainBosTau7,498 chainBosTau7,668 chainBosTau7,683 chainBosTau7,697 chainBosTau7,766 chainBosTau7,787 chainBosTau7,802 chainBosTau7,862 chainBosTau7,893 chainBosTau7,988 chainHg19,196 chainHg19,208 chainHg19,219 chainHg19,320 chainHg19,359 chainHg19,392 chainHg19,397 chainHg19,419 chainHg19,431 chainHg19,438 chainHg19,495 chainHg19,665 chainHg19,680 chainHg19,694 chainHg19,763 chainHg19,784 chainHg19,799 chainHg19,859 chainHg19,890 chainHg19,985 chainMm10,196 chainMm10,208 chainMm10,219 chainMm10,320 chainMm10,359 chainMm10,392 chainMm10,397 chainMm10,419 chainMm10,431 chainMm10,438 chainMm10,495 chainMm10,665 chainMm10,680 chainMm10,694 chainMm10,763 chainMm10,784 chainMm10,799 chainMm10,859 chainMm10,890 chainMm10,985 chainMonDom5,196 chainMonDom5,208 chainMonDom5,219 chainMonDom5,320 chainMonDom5,359 chainMonDom5,392 chainMonDom5,397 chainMonDom5,419 chainMonDom5,431 chainMonDom5,438 chainMonDom5,495 chainMonDom5,665 chainMonDom5,680 chainMonDom5,694 chainMonDom5,763 chainMonDom5,784 chainMonDom5,799 chainMonDom5,859 chainMonDom5,890 chainMonDom5,985 chainNetBosTau7,201 chainNetBosTau7,213 chainNetBosTau7,224 chainNetBosTau7,326 chainNetBosTau7,365 chainNetBosTau7,398 chainNetBosTau7,403 chainNetBosTau7,425 chainNetBosTau7,437 chainNetBosTau7,444 chainNetBosTau7,501 chainNetBosTau7,671 chainNetBosTau7,686 chainNetBosTau7,700 chainNetBosTau7,769 chainNetBosTau7,790 chainNetBosTau7,805 chainNetBosTau7,865 chainNetBosTau7,896 chainNetBosTau7,991 chainNetHg19,199 chainNetHg19,211 chainNetHg19,222 chainNetHg19,323 chainNetHg19,362 chainNetHg19,395 chainNetHg19,400 chainNetHg19,422 chainNetHg19,434 chainNetHg19,441 chainNetHg19,498 chainNetHg19,668 chainNetHg19,683 chainNetHg19,697 chainNetHg19,766 chainNetHg19,787 chainNetHg19,802 chainNetHg19,862 chainNetHg19,893 chainNetHg19,988 chainNetMm10,199 chainNetMm10,211 chainNetMm10,222 chainNetMm10,323 chainNetMm10,362 chainNetMm10,395 chainNetMm10,400 chainNetMm10,422 chainNetMm10,434 chainNetMm10,441 chainNetMm10,498 chainNetMm10,668 chainNetMm10,683 chainNetMm10,697 chainNetMm10,766 chainNetMm10,787 chainNetMm10,802 chainNetMm10,862 chainNetMm10,893 chainNetMm10,988 chainNetMonDom5,199 chainNetMonDom5,211 chainNetMonDom5,222 chainNetMonDom5,323 chainNetMonDom5,362 chainNetMonDom5,395 chainNetMonDom5,400 chainNetMonDom5,422 chainNetMonDom5,434 chainNetMonDom5,441 chainNetMonDom5,498 chainNetMonDom5,668 chainNetMonDom5,683 chainNetMonDom5,697 chainNetMonDom5,766 chainNetMonDom5,787 chainNetMonDom5,802 chainNetMonDom5,862 chainNetMonDom5,893 chainNetMonDom5,988 netBosTau7,198 netBosTau7,210 netBosTau7,221 netBosTau7,323 netBosTau7,362 netBosTau7,395 netBosTau7,400 netBosTau7,422 netBosTau7,434 netBosTau7,441 netBosTau7,498 netBosTau7,668 netBosTau7,683 netBosTau7,697 netBosTau7,766 netBosTau7,787 netBosTau7,802 netBosTau7,862 netBosTau7,893 netBosTau7,988 netHg19,196 netHg19,208 netHg19,219 netHg19,320 netHg19,359 netHg19,392 netHg19,397 netHg19,419 netHg19,431 netHg19,438 netHg19,495 netHg19,665 netHg19,680 netHg19,694 netHg19,763 netHg19,784 netHg19,799 netHg19,859 netHg19,890 netHg19,985 netMm10,196 netMm10,208 netMm10,219 netMm10,320 netMm10,359 netMm10,392 netMm10,397 netMm10,419 netMm10,431 netMm10,438 netMm10,495 netMm10,665 netMm10,680 netMm10,694 netMm10,763 netMm10,784 netMm10,799 netMm10,859 netMm10,890 netMm10,985 netMonDom5,196 netMonDom5,208 netMonDom5,219 netMonDom5,320 netMonDom5,359 netMonDom5,392 netMonDom5,397 netMonDom5,419 netMonDom5,431 netMonDom5,438 netMonDom5,495 netMonDom5,665 netMonDom5,680 netMonDom5,694 netMonDom5,763 netMonDom5,784 netMonDom5,799 netMonDom5,859 netMonDom5,890 netMonDom5,985 transMapEnsemblV5,80 transMapEnsemblV5,198 transMapEnsemblV5,212 transMapEnsemblV5,258 transMapEnsemblV5,283 transMapEnsemblV5,331 transMapEnsemblV5,513 transMapEstV5,49 transMapEstV5,167 transMapEstV5,181 transMapEstV5,227 transMapEstV5,252 transMapEstV5,300 transMapEstV5,482 transMapRefSeqV5,49 transMapRefSeqV5,167 transMapRefSeqV5,181 transMapRefSeqV5,227 transMapRefSeqV5,252 transMapRefSeqV5,300 transMapRefSeqV5,482 transMapRnaV5,49 transMapRnaV5,167 transMapRnaV5,181 transMapRnaV5,227 transMapRnaV5,252 transMapRnaV5,300 transMapRnaV5,482 transMapV5,50 transMapV5,87 transMapV5,273 transMapV5,287 transMapV5,333 transMapV5,358 transMapV5,406 transMapV5,588 unipChain,1 unipChain,7 uniprot,288 change cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 mrna,71 refSeqComposite,909 refSeqComposite,923 changed rmsk,285 uniprot,1382 characteristic mrna,276 check chainBosTau7,345 chainHg19,342 chainMm10,342 chainMonDom5,342 chainNetBosTau7,348 chainNetHg19,345 chainNetMm10,345 chainNetMonDom5,345 netBosTau7,345 netHg19,342 netMm10,342 netMonDom5,342 check-box refSeqComposite,733 checkbox uniprot,231 chiaromonte chainBosTau7,1033 chainHg19,1030 chainMm10,1030 chainMonDom5,1030 chainNetBosTau7,1036 chainNetHg19,1033 chainNetMm10,1033 chainNetMonDom5,1033 netBosTau7,1033 netHg19,1030 netMm10,1030 netMonDom5,1030 chicken HLTOGAannotvHg38v1,57 augustusGene,204 augustusGene,262 chmod uniprot,1921 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 mrna,232 mrna,271 uniprot,657 chosen mrna,294 refSeqComposite,538 chr16 refSeqComposite,1558 chr4 chainBosTau7,377 chainHg19,374 chainMm10,374 chainMonDom5,374 chainNetBosTau7,380 chainNetHg19,377 chainNetMm10,377 chainNetMonDom5,377 netBosTau7,377 netHg19,374 netMm10,374 netMonDom5,374 chr6 transMapEnsemblV5,670 transMapEstV5,639 transMapRefSeqV5,639 transMapRnaV5,639 transMapV5,745 uniprot,1820 chris genscan,21 genscan,172 uniprot,1954 chrm gold,159 chrom refSeqComposite,1557 transMapEnsemblV5,669 transMapEstV5,638 transMapRefSeqV5,638 transMapRnaV5,638 transMapV5,744 uniprot,1819 chromosome chainBosTau7,251 chainBosTau7,332 chainBosTau7,357 chainBosTau7,365 chainBosTau7,375 chainBosTau7,384 chainBosTau7,531 chainBosTau7,546 chainBosTau7,562 chainBosTau7,631 chainBosTau7,637 chainHg19,249 chainHg19,329 chainHg19,354 chainHg19,362 chainHg19,372 chainHg19,381 chainHg19,528 chainHg19,543 chainHg19,559 chainHg19,628 chainHg19,634 chainMm10,249 chainMm10,329 chainMm10,354 chainMm10,362 chainMm10,372 chainMm10,381 chainMm10,528 chainMm10,543 chainMm10,559 chainMm10,628 chainMm10,634 chainMonDom5,249 chainMonDom5,329 chainMonDom5,354 chainMonDom5,362 chainMonDom5,372 chainMonDom5,381 chainMonDom5,528 chainMonDom5,543 chainMonDom5,559 chainMonDom5,628 chainMonDom5,634 chainNetBosTau7,254 chainNetBosTau7,335 chainNetBosTau7,360 chainNetBosTau7,368 chainNetBosTau7,378 chainNetBosTau7,387 chainNetBosTau7,534 chainNetBosTau7,549 chainNetBosTau7,565 chainNetBosTau7,634 chainNetBosTau7,640 chainNetHg19,252 chainNetHg19,332 chainNetHg19,357 chainNetHg19,365 chainNetHg19,375 chainNetHg19,384 chainNetHg19,531 chainNetHg19,546 chainNetHg19,562 chainNetHg19,631 chainNetHg19,637 chainNetMm10,252 chainNetMm10,332 chainNetMm10,357 chainNetMm10,365 chainNetMm10,375 chainNetMm10,384 chainNetMm10,531 chainNetMm10,546 chainNetMm10,562 chainNetMm10,631 chainNetMm10,637 chainNetMonDom5,252 chainNetMonDom5,332 chainNetMonDom5,357 chainNetMonDom5,365 chainNetMonDom5,375 chainNetMonDom5,384 chainNetMonDom5,531 chainNetMonDom5,546 chainNetMonDom5,562 chainNetMonDom5,631 chainNetMonDom5,637 cytoBandIdeo,1 gap,130 netBosTau7,251 netBosTau7,332 netBosTau7,357 netBosTau7,365 netBosTau7,375 netBosTau7,384 netBosTau7,531 netBosTau7,546 netBosTau7,562 netBosTau7,631 netBosTau7,637 netHg19,249 netHg19,329 netHg19,354 netHg19,362 netHg19,372 netHg19,381 netHg19,528 netHg19,543 netHg19,559 netHg19,628 netHg19,634 netMm10,249 netMm10,329 netMm10,354 netMm10,362 netMm10,372 netMm10,381 netMm10,528 netMm10,543 netMm10,559 netMm10,628 netMm10,634 netMonDom5,249 netMonDom5,329 netMonDom5,354 netMonDom5,362 netMonDom5,372 netMonDom5,381 netMonDom5,528 netMonDom5,543 netMonDom5,559 netMonDom5,628 netMonDom5,634 ucscToINSDC,20 ucscToRefSeq,15 uniprot,1416 chromosome-based chainBosTau7,325 chainHg19,322 chainMm10,322 chainMonDom5,322 chainNetBosTau7,328 chainNetHg19,325 chainNetMm10,325 chainNetMonDom5,325 netBosTau7,325 netHg19,322 netMm10,322 netMonDom5,322 circle rmsk,202 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 cl transMapEnsemblV5,726 transMapEstV5,695 transMapRefSeqV5,695 transMapRnaV5,695 transMapV5,801 clark mrna,468 class rmsk,199 rmsk,253 classes rmsk,150 classification HLTOGAannotvHg38v1,140 HLTOGAannotvHg38v1,304 rmsk,266 rmsk,282 classify HLTOGAannotvHg38v1,256 classifying HLTOGAannotvHg38v1,35 clawson gc5BaseBw,83 ucscToINSDC,52 ucscToRefSeq,46 cleaved uniprot,249 click chainBosTau7,458 chainBosTau7,472 chainHg19,455 chainHg19,469 chainMm10,455 chainMm10,469 chainMonDom5,455 chainMonDom5,469 chainNetBosTau7,461 chainNetBosTau7,475 chainNetHg19,458 chainNetHg19,472 chainNetMm10,458 chainNetMm10,472 chainNetMonDom5,458 chainNetMonDom5,472 gc5BaseBw,56 netBosTau7,458 netBosTau7,472 netHg19,455 netHg19,469 netMm10,455 netMm10,469 netMonDom5,455 netMonDom5,469 refSeqComposite,751 refSeqComposite,773 transMapEnsemblV5,136 transMapEnsemblV5,150 transMapEstV5,105 transMapEstV5,119 transMapRefSeqV5,105 transMapRefSeqV5,119 transMapRnaV5,105 transMapRnaV5,119 transMapV5,211 transMapV5,225 uniprot,229 uniprot,481 uniprot,1673 xenoRefGene,110 xenoRefGene,214 clicking HLTOGAannotvHg38v1,294 uniprot,1633 clinical refSeqComposite,585 clipped nestedRepeats,224 closer transMapEnsemblV5,68 transMapEstV5,37 transMapRefSeqV5,37 transMapRnaV5,37 transMapV5,36 closest augustusGene,241 clusters refSeqComposite,412 cm refSeqComposite,1763 xenoRefGene,333 code refSeqComposite,1518 transMapEnsemblV5,624 transMapEnsemblV5,638 transMapEstV5,593 transMapEstV5,607 transMapRefSeqV5,593 transMapRefSeqV5,607 transMapRnaV5,593 transMapRnaV5,607 transMapV5,699 transMapV5,713 uniprot,1546 uniprot,1775 uniprot,1789 windowmaskerSdust,34 coding HLTOGAannotvHg38v1,113 HLTOGAannotvHg38v1,149 refSeqComposite,1084 simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,212 codon genscan,100 genscan,122 mrna,332 mrna,357 refSeqComposite,720 refSeqComposite,814 refSeqComposite,821 refSeqComposite,836 refSeqComposite,866 transMapEnsemblV5,114 transMapEstV5,83 transMapRefSeqV5,83 transMapRnaV5,83 transMapV5,189 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 xenoRefGene,190 codons genscan,89 genscan,93 refSeqComposite,841 refSeqComposite,848 xenoRefGene,165 xenoRefGene,172 cognate transMapEnsemblV5,180 transMapEstV5,149 transMapRefSeqV5,149 transMapRnaV5,149 transMapV5,255 coiled-coil uniprot,367 collaboration ucscToINSDC,9 ucscToINSDC,31 collaborator refSeqComposite,647 collaborators refSeqComposite,691 collapsed nestedRepeats,173 collection refSeqComposite,32 xenoRefGene,33 color chainBosTau7,353 chainHg19,350 chainMm10,350 chainMonDom5,350 chainNetBosTau7,356 chainNetHg19,353 chainNetMm10,353 chainNetMonDom5,353 genscan,86 genscan,96 mrna,77 mrna,273 netBosTau7,353 netHg19,350 netMm10,350 netMonDom5,350 refSeqComposite,607 refSeqComposite,630 refSeqComposite,845 rmsk,207 xenoRefGene,58 xenoRefGene,169 color-coded HLTOGAannotvHg38v1,139 coloration gold,94 colored chainBosTau7,328 chainHg19,325 chainMm10,325 chainMonDom5,325 chainNetBosTau7,331 chainNetHg19,328 chainNetMm10,328 chainNetMonDom5,328 mrna,373 netBosTau7,328 netHg19,325 netMm10,325 netMonDom5,325 transMapEnsemblV5,146 transMapEstV5,115 transMapRefSeqV5,115 transMapRnaV5,115 transMapV5,221 uniprot,160 uniprot,176 coloring chainBosTau7,344 chainHg19,341 chainMm10,341 chainMonDom5,341 chainNetBosTau7,347 chainNetHg19,344 chainNetMm10,344 chainNetMonDom5,344 genscan,116 mrna,333 mrna,360 netBosTau7,344 netHg19,341 netMm10,341 netMonDom5,341 refSeqComposite,815 refSeqComposite,822 refSeqComposite,860 transMapEnsemblV5,115 transMapEstV5,84 transMapRefSeqV5,84 transMapRnaV5,84 transMapV5,190 xenoRefGene,139 xenoRefGene,146 xenoRefGene,184 colors refSeqComposite,837 xenoRefGene,81 xenoRefGene,161 column nestedRepeats,107 refSeqComposite,1428 refSeqComposite,1439 columns transMapEnsemblV5,553 transMapEstV5,522 transMapRefSeqV5,522 transMapRnaV5,522 transMapV5,628 combination mrna,235 combined rmsk,232 command cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 refSeqComposite,1549 refSeqComposite,1613 transMapEnsemblV5,256 transMapEstV5,225 transMapRefSeqV5,225 transMapRnaV5,225 transMapV5,331 uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 common cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 comparative chainBosTau7,11 chainHg19,10 chainMm10,10 chainMonDom5,10 chainNetBosTau7,14 chainNetBosTau7Viewchain,12 chainNetBosTau7Viewnet,12 chainNetHg19,13 chainNetHg19Viewchain,11 chainNetHg19Viewnet,11 chainNetMm10,13 chainNetMm10Viewchain,11 chainNetMm10Viewnet,11 chainNetMonDom5,13 chainNetMonDom5Viewchain,11 chainNetMonDom5Viewnet,11 netBosTau7,11 netHg19,10 netMm10,10 netMonDom5,10 transMapEnsemblV5,744 transMapEnsemblV5,799 transMapEstV5,713 transMapEstV5,768 transMapRefSeqV5,713 transMapRefSeqV5,768 transMapRnaV5,713 transMapRnaV5,768 transMapV5,819 transMapV5,874 compare mrna,342 refSeqComposite,831 transMapEnsemblV5,124 transMapEstV5,93 transMapRefSeqV5,93 transMapRnaV5,93 transMapV5,199 xenoRefGene,155 compared transMapV5,154 comparison genscan,109 uniprot,1260 compiled refSeqComposite,1514 transMapEnsemblV5,620 transMapEstV5,589 transMapRefSeqV5,589 transMapRnaV5,589 transMapV5,695 uniprot,1771 complete genscan,213 completely refSeqComposite,813 uniprot,1464 xenoRefGene,137 complex chainBosTau7,166 chainHg19,164 chainMm10,164 chainMonDom5,164 chainNetBosTau7,169 chainNetHg19,167 chainNetMm10,167 chainNetMonDom5,167 netBosTau7,166 netHg19,164 netMm10,164 netMonDom5,164 complexity nestedRepeats,40 rmsk,30 rmsk,182 component gold,136 composed uniprot,1396 composite refSeqComposite,16 refSeqComposite,149 compositional genscan,41 uniprot,399 comput transMapEnsemblV5,812 transMapEstV5,781 transMapRefSeqV5,781 transMapRnaV5,781 transMapV5,887 computational genscan,196 uniprot,51 computed transMapEnsemblV5,228 transMapEstV5,197 transMapRefSeqV5,197 transMapRnaV5,197 transMapV5,303 comstock transMapEnsemblV5,725 transMapEstV5,694 transMapRefSeqV5,694 transMapRnaV5,694 transMapV5,800 concerning refSeqComposite,126 conditional augustusGene,118 configuration HLTOGAannotvHg38v1,131 chainBosTau7,317 chainHg19,314 chainMm10,314 chainMonDom5,314 chainNetBosTau7,320 chainNetHg19,317 chainNetMm10,317 chainNetMonDom5,317 gc5BaseBw,60 gc5BaseBw,69 genscan,64 genscan,84 mrna,30 nestedRepeats,114 netBosTau7,317 netHg19,314 netMm10,314 netMonDom5,314 refSeqComposite,144 rmsk,138 transMapEnsemblV5,95 transMapEstV5,64 transMapRefSeqV5,64 transMapRnaV5,64 transMapV5,170 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoRefGene,46 configured gc5BaseBw,42 mrna,329 refSeqComposite,730 transMapEnsemblV5,111 transMapEstV5,80 transMapRefSeqV5,80 transMapRnaV5,80 transMapV5,186 xenoRefGene,89 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 conservation transMapEnsemblV5,232 transMapEstV5,201 transMapRefSeqV5,201 transMapRnaV5,201 transMapV5,307 consistency uniprot,402 consortium uniprot,1986 constructed cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 refSeqComposite,1218 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 consult mrna,166 contact uniprot,686 uniprot,1440 contain transMapV5,14 uniprot,1163 contained chainBosTau7,894 chainHg19,891 chainMm10,891 chainMonDom5,891 chainNetBosTau7,897 chainNetHg19,894 chainNetMm10,894 chainNetMonDom5,894 netBosTau7,894 netHg19,891 netMm10,891 netMonDom5,891 refSeqComposite,1142 containing refSeqComposite,1658 transMapEnsemblV5,548 transMapEstV5,517 transMapRefSeqV5,517 transMapRnaV5,517 transMapV5,623 contains gap,118 mrna,191 refSeqComposite,152 refSeqComposite,872 transMapEnsemblV5,17 transMapEstV5,15 transMapRefSeqV5,16 transMapRnaV5,16 xenoRefGene,142 content augustusGene,71 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5BaseBw,31 contig gold,82 contigs gap,85 gold,74 gold,99 gold,116 controls cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 refSeqComposite,734 xenoRefGene,92 convenience uniprot,404 conventions HLTOGAannotvHg38v1,129 chainBosTau7,315 chainHg19,312 chainMm10,312 chainMonDom5,312 chainNetBosTau7,318 chainNetHg19,315 chainNetMm10,315 chainNetMonDom5,315 genscan,62 genscan,70 mrna,28 mrna,36 nestedRepeats,112 netBosTau7,315 netHg19,312 netMm10,312 netMonDom5,312 refSeqComposite,142 refSeqComposite,453 refSeqComposite,601 rmsk,136 transMapEnsemblV5,93 transMapEnsemblV5,101 transMapEstV5,62 transMapEstV5,70 transMapRefSeqV5,62 transMapRefSeqV5,70 transMapRnaV5,62 transMapRnaV5,70 transMapV5,168 transMapV5,176 uniprot,447 xenoRefGene,44 xenoRefGene,52 converted chainBosTau7,608 chainHg19,605 chainMm10,605 chainMonDom5,605 chainNetBosTau7,611 chainNetHg19,608 chainNetMm10,608 chainNetMonDom5,608 netBosTau7,608 netHg19,605 netMm10,605 netMonDom5,605 refSeqComposite,1174 refSeqComposite,1588 uniprot,1477 uniprot,1760 coordinates refSeqComposite,37 refSeqComposite,68 uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 correct uniprot,962 uniprot,1222 corrections refSeqComposite,121 corresponding transMapEnsemblV5,259 transMapEstV5,228 transMapRefSeqV5,228 transMapRnaV5,228 transMapV5,334 corresponds mrna,174 could refSeqComposite,969 refSeqComposite,1545 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 gap,132 counts gold,143 coverage uniprot,1485 covered chainBosTau7,817 chainHg19,814 chainMm10,814 chainMonDom5,814 chainNetBosTau7,820 chainNetHg19,817 chainNetMm10,817 chainNetMonDom5,817 gap,25 gold,27 netBosTau7,817 netHg19,814 netMm10,814 netMonDom5,814 cow chainBosTau7,1 chainBosTau7,3 chainBosTau7,66 chainBosTau7,99 chainBosTau7,152 chainBosTau7,272 chainBosTau7,299 chainBosTau7,581 chainBosTau7,630 chainNetBosTau7,1 chainNetBosTau7,4 chainNetBosTau7,69 chainNetBosTau7,102 chainNetBosTau7,155 chainNetBosTau7,275 chainNetBosTau7,302 chainNetBosTau7,584 chainNetBosTau7,633 chainNetBosTau7Viewchain,2 chainNetBosTau7Viewnet,2 netBosTau7,1 netBosTau7,3 netBosTau7,66 netBosTau7,99 netBosTau7,152 netBosTau7,272 netBosTau7,299 netBosTau7,581 netBosTau7,630 transMapEnsemblV5,451 transMapEstV5,420 transMapRefSeqV5,420 transMapRnaV5,420 transMapV5,526 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 create refSeqComposite,310 windowmaskerSdust,48 created chainBosTau7,992 chainHg19,989 chainMm10,989 chainMonDom5,989 chainNetBosTau7,995 chainNetHg19,992 chainNetMm10,992 chainNetMonDom5,992 microsat,89 netBosTau7,992 netHg19,989 netMm10,989 netMonDom5,989 refSeqComposite,102 refSeqComposite,1153 rmsk,13 transMapEnsemblV5,74 transMapEstV5,43 transMapRefSeqV5,43 transMapRnaV5,43 transMapV5,42 uniprot,824 uniprot,1942 creates chainBosTau7,642 chainHg19,639 chainMm10,639 chainMonDom5,639 chainNetBosTau7,645 chainNetHg19,642 chainNetMm10,642 chainNetMonDom5,642 netBosTau7,642 netHg19,639 netMm10,639 netMonDom5,639 credits HLTOGAannotvHg38v1,314 augustusGene,247 chainBosTau7,918 chainHg19,915 chainMm10,915 chainMonDom5,915 chainNetBosTau7,921 chainNetHg19,918 chainNetMm10,918 chainNetMonDom5,918 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 gc5BaseBw,71 genscan,169 microsat,104 mrna,441 nestedRepeats,302 netBosTau7,918 netHg19,915 netMm10,915 netMonDom5,915 refSeqComposite,1711 rmsk,325 simpleRepeat,66 transMapEnsemblV5,676 transMapEstV5,645 transMapRefSeqV5,645 transMapRnaV5,645 transMapV5,751 ucscToINSDC,42 ucscToRefSeq,36 uniprot,1938 xenoRefGene,280 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 mrna,249 mrna,267 mrna,305 mrna,323 transMapEnsemblV5,359 transMapEstV5,328 transMapRefSeqV5,328 transMapRnaV5,328 transMapV5,434 cross-species transMapEnsemblV5,26 transMapEstV5,24 transMapRefSeqV5,24 transMapRnaV5,24 transMapV5,23 cruz chainBosTau7,968 chainBosTau7,1013 chainHg19,965 chainHg19,1010 chainMm10,965 chainMm10,1010 chainMonDom5,965 chainMonDom5,1010 chainNetBosTau7,971 chainNetBosTau7,1016 chainNetHg19,968 chainNetHg19,1013 chainNetMm10,968 chainNetMm10,1013 chainNetMonDom5,968 chainNetMonDom5,1013 netBosTau7,968 netBosTau7,1013 netHg19,965 netHg19,1010 netMm10,965 netMm10,1010 netMonDom5,965 netMonDom5,1010 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 culex augustusGene,220 curated ncbiRefSeq,6 ncbiRefSeqCurated,2 ncbiRefSeqCurated,6 refSeqComposite,88 refSeqComposite,202 refSeqComposite,210 refSeqComposite,251 refSeqComposite,315 refSeqComposite,400 refSeqComposite,422 refSeqComposite,471 refSeqComposite,523 refSeqComposite,556 refSeqComposite,591 refSeqComposite,1413 refSeqComposite,1673 refSeqComposite,1725 refSeqComposite,1803 uniprot,35 uniprot,110 uniprot,142 xenoRefGene,296 xenoRefGene,373 curator rmsk,261 curr nestedRepeats,384 nestedRepeats,406 rmsk,407 rmsk,429 current mrna,109 nestedRepeats,250 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 currently gold,79 refSeqComposite,475 cutoff refSeqComposite,942 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5BaseBw,24 d HLTOGAannotvHg38v1,341 augustusGene,293 chainBosTau7,1060 chainBosTau7,1104 chainHg19,1057 chainHg19,1101 chainMm10,1057 chainMm10,1101 chainMonDom5,1057 chainMonDom5,1101 chainNetBosTau7,1063 chainNetBosTau7,1107 chainNetHg19,1060 chainNetHg19,1104 chainNetMm10,1060 chainNetMm10,1104 chainNetMonDom5,1060 chainNetMonDom5,1104 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 genscan,192 netBosTau7,1060 netBosTau7,1104 netHg19,1057 netHg19,1101 netMm10,1057 netMm10,1101 netMonDom5,1057 netMonDom5,1101 transMapEnsemblV5,764 transMapEnsemblV5,798 transMapEstV5,733 transMapEstV5,767 transMapRefSeqV5,733 transMapRefSeqV5,767 transMapRnaV5,733 transMapRnaV5,767 transMapV5,839 transMapV5,873 d23-6 mrna,513 d36-42 mrna,487 d501-4 refSeqComposite,1821 xenoRefGene,391 d71-5 uniprot,2005 d756-63 refSeqComposite,1787 xenoRefGene,357 da mrna,465 mrna,493 dark refSeqComposite,625 unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,75 darkly mrna,50 data HLTOGAannotvHg38v1,316 cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 gap,97 gc5BaseBw,73 microsat,47 mrna,452 nestedRepeats,263 nestedRepeats,280 refSeqComposite,154 refSeqComposite,656 refSeqComposite,1157 refSeqComposite,1163 refSeqComposite,1290 refSeqComposite,1294 refSeqComposite,1316 refSeqComposite,1368 refSeqComposite,1653 refSeqComposite,1719 rmsk,126 rmsk,287 transMapEnsemblV5,518 transMapEnsemblV5,522 transMapEnsemblV5,536 transMapEnsemblV5,573 transMapEnsemblV5,577 transMapEnsemblV5,691 transMapEstV5,487 transMapEstV5,491 transMapEstV5,505 transMapEstV5,542 transMapEstV5,546 transMapEstV5,660 transMapRefSeqV5,487 transMapRefSeqV5,491 transMapRefSeqV5,505 transMapRefSeqV5,542 transMapRefSeqV5,546 transMapRefSeqV5,660 transMapRnaV5,487 transMapRnaV5,491 transMapRnaV5,505 transMapRnaV5,542 transMapRnaV5,546 transMapRnaV5,660 transMapV5,593 transMapV5,597 transMapV5,611 transMapV5,648 transMapV5,652 transMapV5,766 ucscToINSDC,34 ucscToINSDC,44 ucscToRefSeq,28 ucscToRefSeq,38 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoRefGene,36 xenoRefGene,290 database chainBosTau7,984 chainHg19,981 chainMm10,981 chainMonDom5,981 chainNetBosTau7,987 chainNetHg19,984 chainNetMm10,984 chainNetMonDom5,984 mrna,485 mrna,511 nestedRepeats,345 netBosTau7,984 netHg19,981 netMm10,981 netMonDom5,981 refSeqComposite,564 refSeqComposite,1403 refSeqComposite,1785 refSeqComposite,1806 refSeqComposite,1819 rmsk,125 rmsk,368 transMapEnsemblV5,166 transMapEstV5,135 transMapRefSeqV5,135 transMapRnaV5,135 transMapV5,241 ucscToINSDC,8 ucscToINSDC,30 ucscToINSDC,41 ucscToRefSeq,25 ucscToRefSeq,35 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 xenoRefGene,355 xenoRefGene,376 xenoRefGene,389 databases mrna,459 refSeqComposite,279 refSeqComposite,426 transMapEnsemblV5,698 transMapEstV5,667 transMapRefSeqV5,667 transMapRnaV5,667 transMapV5,773 dataset refSeqComposite,532 david chainBosTau7,978 chainHg19,975 chainMm10,975 chainMonDom5,975 chainNetBosTau7,981 chainNetHg19,978 chainNetMm10,978 chainNetMonDom5,978 netBosTau7,978 netHg19,975 netMm10,975 netMonDom5,975 davis transMapEnsemblV5,727 transMapEstV5,696 transMapRefSeqV5,696 transMapRnaV5,696 transMapV5,802 de augustusGene,303 transMapEnsemblV5,774 transMapEstV5,743 transMapRefSeqV5,743 transMapRnaV5,743 transMapV5,849 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec chainMm10,4 chainMm10,66 chainMm10,306 chainNetMm10,5 chainNetMm10,69 chainNetMm10,309 chainNetMm10Viewchain,3 chainNetMm10Viewnet,3 nestedRepeats,389 nestedRepeats,411 netMm10,4 netMm10,66 netMm10,306 rmsk,412 rmsk,434 transMapEnsemblV5,749 transMapEnsemblV5,815 transMapEstV5,718 transMapEstV5,784 transMapRefSeqV5,718 transMapRefSeqV5,784 transMapRnaV5,718 transMapRnaV5,784 transMapV5,824 transMapV5,890 default chainBosTau7,321 chainHg19,318 chainMm10,318 chainMonDom5,318 chainNetBosTau7,324 chainNetHg19,321 chainNetMm10,321 chainNetMonDom5,321 cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 netBosTau7,321 netHg19,318 netMm10,318 netMonDom5,318 refSeqComposite,766 refSeqComposite,1040 refSeqComposite,1067 uniprot,225 xenoRefGene,103 xenoRefGene,196 defined refSeqComposite,627 uniprot,305 uniprot,1387 definition gap,40 gold,42 deletion chainBosTau7,149 chainBosTau7,1065 chainHg19,147 chainHg19,1062 chainMm10,147 chainMm10,1062 chainMonDom5,147 chainMonDom5,1062 chainNetBosTau7,152 chainNetBosTau7,1068 chainNetHg19,150 chainNetHg19,1065 chainNetMm10,150 chainNetMm10,1065 chainNetMonDom5,150 chainNetMonDom5,1065 mrna,382 netBosTau7,149 netBosTau7,1065 netHg19,147 netHg19,1062 netMm10,147 netMm10,1062 netMonDom5,147 netMonDom5,1062 refSeqComposite,950 refSeqComposite,1046 refSeqComposite,1073 rmsk,220 deletions chainBosTau7,117 chainBosTau7,181 chainHg19,115 chainHg19,179 chainMm10,115 chainMm10,179 chainMonDom5,115 chainMonDom5,179 chainNetBosTau7,120 chainNetBosTau7,184 chainNetHg19,118 chainNetHg19,182 chainNetMm10,118 chainNetMm10,182 chainNetMonDom5,118 chainNetMonDom5,182 netBosTau7,117 netBosTau7,181 netHg19,115 netHg19,179 netMm10,115 netMm10,179 netMonDom5,115 netMonDom5,179 delivered gap,52 gold,51 dense gold,68 mrna,42 nestedRepeats,157 nestedRepeats,168 dependencies genscan,183 depending uniprot,442 uniprot,808 depicts gold,72 windowmaskerSdust,15 deprecated uniprot,1044 derived chainBosTau7,768 chainHg19,765 chainMm10,765 chainMonDom5,765 chainNetBosTau7,771 chainNetHg19,768 chainNetMm10,768 chainNetMonDom5,768 netBosTau7,768 netHg19,765 netMm10,765 netMonDom5,765 uniprot,830 described chainBosTau7,775 chainHg19,772 chainMm10,772 chainMonDom5,772 chainNetBosTau7,778 chainNetHg19,775 chainNetMm10,775 chainNetMonDom5,775 genscan,161 nestedRepeats,60 nestedRepeats,338 netBosTau7,775 netHg19,772 netMm10,772 netMonDom5,772 refSeqComposite,1642 rmsk,96 rmsk,361 uniprot,1524 describes augustusGene,226 gap,61 gold,60 describing refSeqComposite,255 description HLTOGAannotvHg38v1,15 augustusGene,12 chainBosTau7,13 chainBosTau7,780 chainHg19,12 chainHg19,777 chainMm10,12 chainMm10,777 chainMonDom5,12 chainMonDom5,777 chainNetBosTau7,16 chainNetBosTau7,783 chainNetHg19,15 chainNetHg19,780 chainNetMm10,15 chainNetMm10,780 chainNetMonDom5,15 chainNetMonDom5,780 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 gap,7 gc5BaseBw,11 genscan,10 genscan,77 genscan,133 gold,8 microsat,10 mrna,12 mrna,58 nestedRepeats,14 netBosTau7,13 netBosTau7,780 netHg19,12 netHg19,777 netMm10,12 netMm10,777 netMonDom5,12 netMonDom5,777 refSeqComposite,11 refSeqComposite,741 rmsk,9 simpleRepeat,11 transMapEnsemblV5,14 transMapEnsemblV5,234 transMapEstV5,12 transMapEstV5,203 transMapRefSeqV5,13 transMapRefSeqV5,203 transMapRnaV5,13 transMapRnaV5,203 transMapV5,11 transMapV5,309 ucscToINSDC,13 ucscToRefSeq,8 uniprot,11 uniprot,106 windowmaskerSdust,12 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 designed refSeqComposite,1441 uniprot,1355 desired mrna,234 destination transMapEnsemblV5,417 transMapEstV5,386 transMapRefSeqV5,386 transMapRnaV5,386 transMapV5,492 destined uniprot,244 destuniq transMapEnsemblV5,436 transMapEstV5,405 transMapRefSeqV5,405 transMapRnaV5,405 transMapV5,511 detail genscan,164 detailed augustusGene,90 chainBosTau7,464 chainBosTau7,483 chainHg19,461 chainHg19,480 chainMm10,461 chainMm10,480 chainMonDom5,461 chainMonDom5,480 chainNetBosTau7,467 chainNetBosTau7,486 chainNetHg19,464 chainNetHg19,483 chainNetMm10,464 chainNetMm10,483 chainNetMonDom5,464 chainNetMonDom5,483 nestedRepeats,70 netBosTau7,464 netBosTau7,483 netHg19,461 netHg19,480 netMm10,461 netMm10,480 netMonDom5,461 netMonDom5,480 rmsk,37 uniprot,692 details refSeqComposite,95 refSeqComposite,1126 rmsk,119 transMapEnsemblV5,236 transMapEstV5,205 transMapRefSeqV5,205 transMapRnaV5,205 transMapV5,311 uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 determination transMapEnsemblV5,274 transMapEstV5,243 transMapRefSeqV5,243 transMapRnaV5,243 transMapV5,349 determine HLTOGAannotvHg38v1,107 transMapV5,91 determined windowmaskerSdust,19 determining chainBosTau7,488 chainHg19,485 chainMm10,485 chainMonDom5,485 chainNetBosTau7,491 chainNetHg19,488 chainNetMm10,488 chainNetMonDom5,488 netBosTau7,488 netHg19,485 netMm10,485 netMonDom5,485 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 nestedRepeats,387 nestedRepeats,409 rmsk,410 rmsk,432 developed chainBosTau7,925 chainBosTau7,960 chainBosTau7,1006 chainHg19,922 chainHg19,957 chainHg19,1003 chainMm10,922 chainMm10,957 chainMm10,1003 chainMonDom5,922 chainMonDom5,957 chainMonDom5,1003 chainNetBosTau7,928 chainNetBosTau7,963 chainNetBosTau7,1009 chainNetHg19,925 chainNetHg19,960 chainNetHg19,1006 chainNetMm10,925 chainNetMm10,960 chainNetMm10,1006 chainNetMonDom5,925 chainNetMonDom5,960 chainNetMonDom5,1006 cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 netBosTau7,925 netBosTau7,960 netBosTau7,1006 netHg19,922 netHg19,957 netHg19,1003 netMm10,922 netMm10,957 netMm10,1003 netMonDom5,922 netMonDom5,957 netMonDom5,1003 dfam rmsk,112 dg HLTOGAannotvHg38v1,351 di-nucleotide microsat,3 microsat,32 diagnostics refSeqComposite,586 diekhans augustusGene,288 transMapEnsemblV5,683 transMapEnsemblV5,716 transMapEnsemblV5,759 transMapEnsemblV5,791 transMapEstV5,652 transMapEstV5,685 transMapEstV5,728 transMapEstV5,760 transMapRefSeqV5,652 transMapRefSeqV5,685 transMapRefSeqV5,728 transMapRefSeqV5,760 transMapRnaV5,652 transMapRnaV5,685 transMapRnaV5,728 transMapRnaV5,760 transMapV5,758 transMapV5,791 transMapV5,834 transMapV5,866 uniprot,1540 uniprot,1957 diemand uniprot,2014 differ refSeqComposite,288 uniprot,746 uniprot,1131 difference uniprot,1251 differences ncbiRefSeqGenomicDiff,3 refSeqComposite,64 refSeqComposite,461 refSeqComposite,892 refSeqComposite,961 uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 chainBosTau7,563 chainHg19,560 chainMm10,560 chainMonDom5,560 chainNetBosTau7,566 chainNetHg19,563 chainNetMm10,563 chainNetMonDom5,563 gc5BaseBw,50 genscan,54 netBosTau7,563 netHg19,560 netMm10,560 netMonDom5,560 refSeqComposite,99 refSeqComposite,134 refSeqComposite,874 rmsk,149 uniprot,634 differing refSeqComposite,153 difficult transMapEnsemblV5,278 transMapEstV5,247 transMapRefSeqV5,247 transMapRnaV5,247 transMapV5,353 diffs ncbiRefSeqGenomicDiff,2 refSeqComposite,458 refSeqComposite,870 refSeqComposite,1200 refSeqComposite,1375 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 directly cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 uniprot,993 directory refSeqComposite,1531 refSeqComposite,1580 refSeqComposite,1600 rmsk,134 discarded chainBosTau7,694 chainHg19,691 chainMm10,691 chainMonDom5,691 chainNetBosTau7,697 chainNetHg19,694 chainNetMm10,694 chainNetMonDom5,694 netBosTau7,694 netHg19,691 netMm10,691 netMonDom5,691 refSeqComposite,1248 transMapEnsemblV5,383 transMapEstV5,352 transMapRefSeqV5,352 transMapRnaV5,352 transMapV5,458 xenoRefGene,238 discovery transMapEnsemblV5,738 transMapEstV5,707 transMapRefSeqV5,707 transMapRnaV5,707 transMapV5,813 discussion nestedRepeats,364 rmsk,387 disease uniprot,545 uniprot,616 diseases simpleRepeat,54 display HLTOGAannotvHg38v1,128 chainBosTau7,243 chainBosTau7,314 chainBosTau7,359 chainBosTau7,389 chainBosTau7,448 chainBosTau7,477 chainBosTau7,506 chainBosTau7,982 chainHg19,241 chainHg19,311 chainHg19,356 chainHg19,386 chainHg19,445 chainHg19,474 chainHg19,503 chainHg19,979 chainMm10,241 chainMm10,311 chainMm10,356 chainMm10,386 chainMm10,445 chainMm10,474 chainMm10,503 chainMm10,979 chainMonDom5,241 chainMonDom5,311 chainMonDom5,356 chainMonDom5,386 chainMonDom5,445 chainMonDom5,474 chainMonDom5,503 chainMonDom5,979 chainNetBosTau7,246 chainNetBosTau7,317 chainNetBosTau7,362 chainNetBosTau7,392 chainNetBosTau7,451 chainNetBosTau7,480 chainNetBosTau7,509 chainNetBosTau7,985 chainNetHg19,244 chainNetHg19,314 chainNetHg19,359 chainNetHg19,389 chainNetHg19,448 chainNetHg19,477 chainNetHg19,506 chainNetHg19,982 chainNetMm10,244 chainNetMm10,314 chainNetMm10,359 chainNetMm10,389 chainNetMm10,448 chainNetMm10,477 chainNetMm10,506 chainNetMm10,982 chainNetMonDom5,244 chainNetMonDom5,314 chainNetMonDom5,359 chainNetMonDom5,389 chainNetMonDom5,448 chainNetMonDom5,477 chainNetMonDom5,506 chainNetMonDom5,982 genscan,61 genscan,69 genscan,104 gold,131 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,275 mrna,299 mrna,315 mrna,331 mrna,383 nestedRepeats,111 netBosTau7,243 netBosTau7,314 netBosTau7,359 netBosTau7,389 netBosTau7,448 netBosTau7,477 netBosTau7,506 netBosTau7,982 netHg19,241 netHg19,311 netHg19,356 netHg19,386 netHg19,445 netHg19,474 netHg19,503 netHg19,979 netMm10,241 netMm10,311 netMm10,356 netMm10,386 netMm10,445 netMm10,474 netMm10,503 netMm10,979 netMonDom5,241 netMonDom5,311 netMonDom5,356 netMonDom5,386 netMonDom5,445 netMonDom5,474 netMonDom5,503 netMonDom5,979 refSeqComposite,141 refSeqComposite,452 refSeqComposite,600 refSeqComposite,721 refSeqComposite,779 refSeqComposite,835 refSeqComposite,1183 refSeqComposite,1447 rmsk,135 rmsk,141 rmsk,212 transMapEnsemblV5,92 transMapEnsemblV5,100 transMapEnsemblV5,113 transMapEstV5,61 transMapEstV5,69 transMapEstV5,82 transMapRefSeqV5,61 transMapRefSeqV5,69 transMapRefSeqV5,82 transMapRnaV5,61 transMapRnaV5,69 transMapRnaV5,82 transMapV5,167 transMapV5,175 transMapV5,188 uniprot,446 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainBosTau7,425 chainBosTau7,522 chainBosTau7,699 chainHg19,422 chainHg19,519 chainHg19,696 chainMm10,422 chainMm10,519 chainMm10,696 chainMonDom5,422 chainMonDom5,519 chainMonDom5,696 chainNetBosTau7,428 chainNetBosTau7,525 chainNetBosTau7,702 chainNetHg19,425 chainNetHg19,522 chainNetHg19,699 chainNetMm10,425 chainNetMm10,522 chainNetMm10,699 chainNetMonDom5,425 chainNetMonDom5,522 chainNetMonDom5,699 cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 gc5BaseBw,54 nestedRepeats,124 nestedRepeats,217 netBosTau7,425 netBosTau7,522 netBosTau7,699 netHg19,422 netHg19,519 netHg19,696 netMm10,422 netMm10,519 netMm10,696 netMonDom5,422 netMonDom5,519 netMonDom5,696 refSeqComposite,1119 xenoRefGene,204 displays chainBosTau7,124 chainHg19,122 chainMm10,122 chainMonDom5,122 chainNetBosTau7,127 chainNetHg19,125 chainNetMm10,125 chainNetMonDom5,125 cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 microsat,13 netBosTau7,124 netHg19,122 netMm10,122 netMonDom5,122 rmsk,145 simpleRepeat,14 dissertation augustusGene,105 distance transMapEnsemblV5,221 transMapEstV5,190 transMapRefSeqV5,190 transMapRnaV5,190 transMapV5,296 distances transMapEnsemblV5,70 transMapEstV5,39 transMapRefSeqV5,39 transMapRnaV5,39 transMapV5,38 distant transMapEnsemblV5,270 transMapEstV5,239 transMapRefSeqV5,239 transMapRnaV5,239 transMapV5,64 transMapV5,345 distinguish HLTOGAannotvHg38v1,92 cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 distinguished gold,85 distributions augustusGene,83 genscan,42 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged chainBosTau7,917 chainHg19,914 chainMm10,914 chainMonDom5,914 chainNetBosTau7,920 chainNetHg19,917 chainNetMm10,917 chainNetMonDom5,917 nestedRepeats,212 netBosTau7,917 netHg19,914 netMm10,914 netMonDom5,914 transMapV5,152 divided uniprot,56 dj mrna,473 mrna,497 dl mrna,501 dna chainBosTau7,1026 chainHg19,1023 chainMm10,1023 chainMonDom5,1023 chainNetBosTau7,1029 chainNetHg19,1026 chainNetMm10,1026 chainNetMonDom5,1026 cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 genscan,219 microsat,123 nestedRepeats,33 nestedRepeats,41 netBosTau7,1026 netHg19,1023 netMm10,1023 netMonDom5,1023 refSeqComposite,1085 rmsk,23 rmsk,31 rmsk,174 rmsk,177 rmsk,257 simpleRepeat,83 do cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 refSeqComposite,390 transMapEnsemblV5,319 transMapEstV5,288 transMapRefSeqV5,288 transMapRnaV5,288 transMapV5,394 uniprot,168 uniprot,1129 doc rmsk,132 document gap,58 gold,57 documentation gap,30 gold,32 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 donor genscan,31 double chainBosTau7,132 chainBosTau7,162 chainHg19,130 chainHg19,160 chainMm10,130 chainMm10,160 chainMonDom5,130 chainMonDom5,160 chainNetBosTau7,135 chainNetBosTau7,165 chainNetHg19,133 chainNetHg19,163 chainNetMm10,133 chainNetMm10,163 chainNetMonDom5,133 chainNetMonDom5,163 netBosTau7,132 netBosTau7,162 netHg19,130 netHg19,160 netMm10,130 netMm10,160 netMonDom5,130 netMonDom5,160 refSeqComposite,1020 double-lined chainBosTau7,223 chainHg19,221 chainMm10,221 chainMonDom5,221 chainNetBosTau7,226 chainNetHg19,224 chainNetMm10,224 chainNetMonDom5,224 netBosTau7,223 netHg19,221 netMm10,221 netMonDom5,221 double-sided chainBosTau7,106 chainHg19,104 chainMm10,104 chainMonDom5,104 chainNetBosTau7,109 chainNetHg19,107 chainNetMm10,107 chainNetMonDom5,107 netBosTau7,106 netHg19,104 netMm10,104 netMonDom5,104 download refSeqComposite,1566 refSeqComposite,1709 transMapEnsemblV5,560 transMapEstV5,529 transMapRefSeqV5,529 transMapRnaV5,529 transMapV5,635 uniprot,1744 uniprot,1983 downloaded refSeqComposite,1166 refSeqComposite,1331 refSeqComposite,1520 transMapEnsemblV5,557 transMapEnsemblV5,626 transMapEstV5,526 transMapEstV5,595 transMapRefSeqV5,526 transMapRefSeqV5,595 transMapRnaV5,526 transMapRnaV5,595 transMapV5,632 transMapV5,701 ucscToINSDC,36 ucscToRefSeq,30 uniprot,1741 uniprot,1777 downloading transMapEnsemblV5,636 transMapEstV5,605 transMapRefSeqV5,605 transMapRnaV5,605 transMapV5,711 uniprot,1787 downloads refSeqComposite,1334 refSeqComposite,1350 refSeqComposite,1489 refSeqComposite,1579 refSeqComposite,1604 refSeqComposite,1683 rmsk,76 uniprot,1698 downstream refSeqComposite,1458 dr refSeqComposite,1797 xenoRefGene,367 drawn gap,108 gold,127 draws uniprot,1532 drosophila augustusGene,213 due HLTOGAannotvHg38v1,207 chainBosTau7,146 chainBosTau7,216 chainBosTau7,228 chainHg19,144 chainHg19,214 chainHg19,226 chainMm10,144 chainMm10,214 chainMm10,226 chainMonDom5,144 chainMonDom5,214 chainMonDom5,226 chainNetBosTau7,149 chainNetBosTau7,219 chainNetBosTau7,231 chainNetHg19,147 chainNetHg19,217 chainNetHg19,229 chainNetMm10,147 chainNetMm10,217 chainNetMm10,229 chainNetMonDom5,147 chainNetMonDom5,217 chainNetMonDom5,229 netBosTau7,146 netBosTau7,216 netBosTau7,228 netHg19,144 netHg19,214 netHg19,226 netMm10,144 netMm10,214 netMm10,226 netMonDom5,144 netMonDom5,214 netMonDom5,226 refSeqComposite,979 uniprot,848 uniprot,919 uniprot,1368 duplicate uniprot,594 duplication chainBosTau7,1064 chainHg19,1061 chainMm10,1061 chainMonDom5,1061 chainNetBosTau7,1067 chainNetHg19,1064 chainNetMm10,1064 chainNetMonDom5,1064 cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 netBosTau7,1064 netHg19,1061 netMm10,1061 netMonDom5,1061 duplications transMapEnsemblV5,312 transMapEnsemblV5,510 transMapEstV5,281 transMapEstV5,479 transMapRefSeqV5,281 transMapRefSeqV5,479 transMapRnaV5,281 transMapRnaV5,479 transMapV5,387 transMapV5,585 during chainBosTau7,822 chainHg19,819 chainMm10,819 chainMonDom5,819 chainNetBosTau7,825 chainNetHg19,822 chainNetMm10,822 chainNetMonDom5,822 netBosTau7,822 netHg19,819 netMm10,819 netMonDom5,819 dynamic chainBosTau7,655 chainHg19,652 chainMm10,652 chainMonDom5,652 chainNetBosTau7,658 chainNetHg19,655 chainNetMm10,655 chainNetMonDom5,655 netBosTau7,655 netHg19,652 netMm10,652 netMonDom5,652 e HLTOGAannotvHg38v1,339 uniprot,2021 e.g chainBosTau7,376 chainHg19,373 chainMm10,373 chainMonDom5,373 chainNetBosTau7,379 chainNetHg19,376 chainNetMm10,376 chainNetMonDom5,376 netBosTau7,376 netHg19,373 netMm10,373 netMonDom5,373 refSeqComposite,1136 uniprot,398 uniprot,467 e247 transMapEnsemblV5,818 transMapEstV5,787 transMapRefSeqV5,787 transMapRnaV5,787 transMapV5,893 eabn3107 HLTOGAannotvHg38v1,370 each HLTOGAannotvHg38v1,132 chainBosTau7,261 chainHg19,259 chainMm10,259 chainMonDom5,259 chainNetBosTau7,264 chainNetHg19,262 chainNetMm10,262 chainNetMonDom5,262 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 genscan,99 mrna,163 nestedRepeats,120 netBosTau7,261 netHg19,259 netMm10,259 netMonDom5,259 refSeqComposite,542 refSeqComposite,1430 transMapEnsemblV5,389 transMapEnsemblV5,403 transMapEnsemblV5,412 transMapEnsemblV5,431 transMapEstV5,358 transMapEstV5,372 transMapEstV5,381 transMapEstV5,400 transMapRefSeqV5,358 transMapRefSeqV5,372 transMapRefSeqV5,381 transMapRefSeqV5,400 transMapRnaV5,358 transMapRnaV5,372 transMapRnaV5,381 transMapRnaV5,400 transMapV5,464 transMapV5,478 transMapV5,487 transMapV5,506 uniprot,151 echo uniprot,1925 edge uniprot,1182 uniprot,1451 editors genscan,195 either chainBosTau7,129 chainHg19,127 chainMm10,127 chainMonDom5,127 chainNetBosTau7,132 chainNetHg19,130 chainNetMm10,130 chainNetMonDom5,130 gap,87 netBosTau7,129 netHg19,127 netMm10,127 netMonDom5,127 rmsk,273 uniprot,816 uniprot,1398 electronic nestedRepeats,348 rmsk,371 element rmsk,228 elements nestedRepeats,352 nestedRepeats,380 rmsk,3 rmsk,156 rmsk,164 rmsk,169 rmsk,176 rmsk,375 rmsk,403 elsevier genscan,202 em windowmaskerSdust,93 emerged chainBosTau7,828 chainHg19,825 chainMm10,825 chainMonDom5,825 chainNetBosTau7,831 chainNetHg19,828 chainNetMm10,828 chainNetMonDom5,828 netBosTau7,828 netHg19,825 netMm10,825 netMonDom5,825 encode HLTOGAannotvHg38v1,161 HLTOGAannotvHg38v1,191 HLTOGAannotvHg38v1,267 HLTOGAannotvHg38v1,290 end refSeqComposite,1054 refSeqComposite,1561 rmsk,245 transMapEnsemblV5,673 transMapEstV5,642 transMapRefSeqV5,642 transMapRnaV5,642 transMapV5,748 uniprot,126 uniprot,210 uniprot,1823 enough HLTOGAannotvHg38v1,254 refSeqComposite,1028 ensembl transMapEnsemblV5,2 transMapEnsemblV5,4 transMapEnsemblV5,20 transMapEnsemblV5,40 transMapEnsemblV5,47 transMapEnsemblV5,58 transMapEnsemblV5,592 transMapEnsemblV5,708 transMapEstV5,561 transMapEstV5,677 transMapRefSeqV5,561 transMapRefSeqV5,677 transMapRnaV5,561 transMapRnaV5,677 transMapV5,667 transMapV5,783 uniprot,731 uniprot,834 uniprot,865 ensure transMapEnsemblV5,385 transMapEstV5,354 transMapRefSeqV5,354 transMapRnaV5,354 transMapV5,460 enter chainBosTau7,370 chainHg19,367 chainMm10,367 chainMonDom5,367 chainNetBosTau7,373 chainNetHg19,370 chainNetMm10,370 chainNetMonDom5,370 netBosTau7,370 netHg19,367 netMm10,367 netMonDom5,367 entered mrna,200 mrna,210 entire cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 windowmaskerSdust,37 entirely uniprot,1434 entries refSeqComposite,1359 ermolaeva refSeqComposite,1760 xenoRefGene,330 errors refSeqComposite,953 especially mrna,101 est mrna,11 refSeqComposite,264 refSeqComposite,364 transMapEnsemblV5,689 transMapEstV5,4 transMapEstV5,18 transMapEstV5,658 transMapRefSeqV5,658 transMapRnaV5,658 transMapV5,764 established refSeqComposite,688 ests transMapEnsemblV5,177 transMapEnsemblV5,601 transMapEstV5,2 transMapEstV5,146 transMapEstV5,570 transMapRefSeqV5,146 transMapRefSeqV5,570 transMapRnaV5,146 transMapRnaV5,570 transMapV5,252 transMapV5,676 et HLTOGAannotvHg38v1,354 cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 refSeqComposite,1770 transMapEnsemblV5,735 transMapEstV5,704 transMapRefSeqV5,704 transMapRnaV5,704 transMapV5,810 xenoRefGene,340 etc uniprot,479 evaluate uniprot,1461 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 even uniprot,136 every chainBosTau7,277 chainHg19,275 chainMm10,275 chainMonDom5,275 chainNetBosTau7,280 chainNetHg19,278 chainNetMm10,278 chainNetMonDom5,278 netBosTau7,277 netHg19,275 netMm10,275 netMonDom5,275 refSeqComposite,478 uniprot,1571 evidence HLTOGAannotvHg38v1,196 HLTOGAannotvHg38v1,250 HLTOGAannotvHg38v1,283 refSeqComposite,261 refSeqComposite,276 evolution chainBosTau7,1061 chainHg19,1058 chainMm10,1058 chainMonDom5,1058 chainNetBosTau7,1064 chainNetHg19,1061 chainNetMm10,1061 chainNetMonDom5,1061 netBosTau7,1061 netHg19,1058 netMm10,1058 netMonDom5,1058 evolutionary cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 transMapEnsemblV5,69 transMapEstV5,38 transMapRefSeqV5,38 transMapRnaV5,38 transMapV5,37 ew mrna,477 ewing transMapEnsemblV5,729 transMapEstV5,698 transMapRefSeqV5,698 transMapRnaV5,698 transMapV5,804 exact uniprot,1622 uniprot,1747 example mrna,132 mrna,185 refSeqComposite,1535 rmsk,256 transMapEnsemblV5,448 transMapEnsemblV5,660 transMapEstV5,417 transMapEstV5,629 transMapRefSeqV5,417 transMapRefSeqV5,629 transMapRnaV5,417 transMapRnaV5,629 transMapV5,97 transMapV5,523 transMapV5,735 uniprot,1450 uniprot,1811 uniprot,1901 examples refSeqComposite,406 except refSeqComposite,41 uniprot,508 exclude mrna,80 mrna,285 mrna,291 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 uniprot,1918 exhibits HLTOGAannotvHg38v1,154 HLTOGAannotvHg38v1,183 HLTOGAannotvHg38v1,230 exist chainBosTau7,409 chainHg19,406 chainMm10,406 chainMonDom5,406 chainNetBosTau7,412 chainNetHg19,409 chainNetMm10,409 chainNetMonDom5,409 cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,97 netBosTau7,409 netHg19,406 netMm10,406 netMonDom5,406 refSeqComposite,293 exists refSeqComposite,330 exon HLTOGAannotvHg38v1,312 augustusGene,86 exons HLTOGAannotvHg38v1,114 chainBosTau7,49 chainHg19,48 chainMm10,48 chainMonDom5,48 chainNetBosTau7,52 chainNetHg19,51 chainNetMm10,51 chainNetMonDom5,51 genscan,44 netBosTau7,49 netHg19,48 netMm10,48 netMonDom5,48 transMapEnsemblV5,742 transMapEstV5,711 transMapRefSeqV5,711 transMapRnaV5,711 transMapV5,817 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expanded refSeqComposite,665 expansions simpleRepeat,48 expected cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 expense transMapEnsemblV5,297 transMapEstV5,266 transMapRefSeqV5,266 transMapRnaV5,266 transMapV5,372 experimentally uniprot,304 explanation gc5BaseBw,66 explored cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 refSeqComposite,1307 uniprot,1716 expressed mrna,140 expression cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 extend rmsk,308 extra transMapEnsemblV5,552 transMapEstV5,521 transMapRefSeqV5,521 transMapRnaV5,521 transMapV5,627 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 extract refSeqComposite,1537 extracted nestedRepeats,23 f chainBosTau7,1034 chainHg19,1031 chainMm10,1031 chainMonDom5,1031 chainNetBosTau7,1037 chainNetHg19,1034 chainNetMm10,1034 chainNetMonDom5,1034 gold,155 netBosTau7,1034 netHg19,1031 netMm10,1031 netMonDom5,1031 refSeqComposite,1757 xenoRefGene,327 facilitate genscan,106 uniprot,1852 factor mrna,177 famiglietti uniprot,2018 families uniprot,1395 family rmsk,249 faq augustusGene,45 genscan,60 nestedRepeats,298 refSeqComposite,140 rmsk,321 transMapEnsemblV5,579 transMapEstV5,548 transMapRefSeqV5,548 transMapRnaV5,548 transMapV5,654 uniprot,1839 far uniprot,599 farrell refSeqComposite,1762 xenoRefGene,332 fasta refSeqComposite,1663 feature chainBosTau7,247 chainHg19,245 chainMm10,245 chainMonDom5,245 chainNetBosTau7,250 chainNetHg19,248 chainNetMm10,248 chainNetMonDom5,248 genscan,129 mrna,335 netBosTau7,247 netHg19,245 netMm10,245 netMonDom5,245 refSeqComposite,823 refSeqComposite,856 transMapEnsemblV5,117 transMapEstV5,86 transMapRefSeqV5,86 transMapRnaV5,86 transMapV5,192 uniprot,64 uniprot,524 uniprot,613 xenoRefGene,147 xenoRefGene,180 features refSeqComposite,724 transMapEnsemblV5,654 transMapEstV5,623 transMapRefSeqV5,623 transMapRnaV5,623 transMapV5,729 uniprot,694 uniprot,1805 xenoRefGene,83 feb chainHg19,4 chainHg19,66 chainHg19,306 chainNetHg19,5 chainNetHg19,69 chainNetHg19,309 chainNetHg19Viewchain,3 chainNetHg19Viewnet,3 netHg19,4 netHg19,66 netHg19,306 fed chainBosTau7,620 chainHg19,617 chainMm10,617 chainMonDom5,617 chainNetBosTau7,623 chainNetHg19,620 chainNetMm10,620 chainNetMonDom5,620 netBosTau7,620 netHg19,617 netMm10,617 netMonDom5,617 feedback refSeqComposite,107 uniprot,1445 uniprot,1961 fewer transMapV5,160 ffer windowmaskerSdust,96 field augustusGene,120 file cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 gap,51 gap,67 gold,50 gold,66 refSeqComposite,1171 refSeqComposite,1381 refSeqComposite,1392 refSeqComposite,1657 uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 windowmaskerSdust,77 filenames uniprot,1748 uniprot,1894 files refSeqComposite,1164 refSeqComposite,1482 transMapEnsemblV5,547 transMapEnsemblV5,581 transMapEstV5,516 transMapEstV5,550 transMapRefSeqV5,516 transMapRefSeqV5,550 transMapRnaV5,516 transMapRnaV5,550 transMapV5,622 transMapV5,656 uniprot,1863 fill chainBosTau7,852 chainBosTau7,885 chainHg19,849 chainHg19,882 chainMm10,849 chainMm10,882 chainMonDom5,849 chainMonDom5,882 chainNetBosTau7,855 chainNetBosTau7,888 chainNetHg19,852 chainNetHg19,885 chainNetMm10,852 chainNetMm10,885 chainNetMonDom5,852 chainNetMonDom5,885 netBosTau7,852 netBosTau7,885 netHg19,849 netHg19,882 netMm10,849 netMm10,882 netMonDom5,849 netMonDom5,882 filled chainBosTau7,418 chainBosTau7,437 chainBosTau7,834 chainBosTau7,907 chainHg19,415 chainHg19,434 chainHg19,831 chainHg19,904 chainMm10,415 chainMm10,434 chainMm10,831 chainMm10,904 chainMonDom5,415 chainMonDom5,434 chainMonDom5,831 chainMonDom5,904 chainNetBosTau7,421 chainNetBosTau7,440 chainNetBosTau7,837 chainNetBosTau7,910 chainNetHg19,418 chainNetHg19,437 chainNetHg19,834 chainNetHg19,907 chainNetMm10,418 chainNetMm10,437 chainNetMm10,834 chainNetMm10,907 chainNetMonDom5,418 chainNetMonDom5,437 chainNetMonDom5,834 chainNetMonDom5,907 netBosTau7,418 netBosTau7,437 netBosTau7,834 netBosTau7,907 netHg19,415 netHg19,434 netHg19,831 netHg19,904 netMm10,415 netMm10,434 netMm10,831 netMm10,904 netMonDom5,415 netMonDom5,434 netMonDom5,831 netMonDom5,904 filter chainBosTau7,382 chainHg19,379 chainMm10,379 chainMonDom5,379 chainNetBosTau7,385 chainNetHg19,382 chainNetMm10,382 chainNetMonDom5,382 genscan,82 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,224 mrna,248 mrna,266 mrna,304 mrna,322 netBosTau7,382 netHg19,379 netMm10,379 netMonDom5,379 uniprot,187 uniprot,664 filtered mrna,287 transMapEnsemblV5,77 transMapEnsemblV5,352 transMapEstV5,46 transMapEstV5,321 transMapRefSeqV5,46 transMapRefSeqV5,321 transMapRnaV5,46 transMapRnaV5,321 transMapV5,45 transMapV5,427 uniprot,1480 uniprot,1499 filtering mrna,226 transMapEnsemblV5,238 transMapEnsemblV5,306 transMapEstV5,207 transMapEstV5,275 transMapRefSeqV5,207 transMapRefSeqV5,275 transMapRnaV5,207 transMapRnaV5,275 transMapV5,313 transMapV5,381 uniprot,693 uniprot,912 uniprot,1154 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 uniprot,1153 find chainBosTau7,664 chainHg19,661 chainMm10,661 chainMonDom5,661 chainNetBosTau7,667 chainNetHg19,664 chainNetMm10,664 chainNetMonDom5,664 netBosTau7,664 netHg19,661 netMm10,661 netMonDom5,661 rmsk,117 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 chainBosTau7,288 chainHg19,286 chainMm10,286 chainMonDom5,286 chainNetBosTau7,291 chainNetHg19,289 chainNetMm10,289 chainNetMonDom5,289 netBosTau7,288 netHg19,286 netMm10,286 netMonDom5,286 transMapEnsemblV5,777 transMapEstV5,746 transMapRefSeqV5,746 transMapRnaV5,746 transMapV5,852 finds transMapV5,159 finger uniprot,327 finished gold,157 transMapEnsemblV5,363 transMapEstV5,332 transMapRefSeqV5,332 transMapRnaV5,332 transMapV5,438 first chainBosTau7,792 chainHg19,789 chainMm10,789 chainMonDom5,789 chainNetBosTau7,795 chainNetHg19,792 chainNetMm10,792 chainNetMonDom5,792 netBosTau7,792 netHg19,789 netMm10,789 netMonDom5,789 refSeqComposite,1427 uniprot,70 fish augustusGene,201 fit chainBosTau7,812 chainHg19,809 chainMm10,809 chainMonDom5,809 chainNetBosTau7,815 chainNetHg19,812 chainNetMm10,812 chainNetMonDom5,812 nestedRepeats,175 netBosTau7,812 netHg19,809 netMm10,809 netMonDom5,809 refSeqComposite,392 five refSeqComposite,873 refSeqComposite,889 fix uniprot,851 flag nestedRepeats,287 rmsk,294 flags nestedRepeats,289 rmsk,296 fly augustusGene,214 follow refSeqComposite,598 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 following chainBosTau7,673 chainHg19,670 chainMm10,670 chainMonDom5,670 chainNetBosTau7,676 chainNetHg19,673 chainNetMm10,673 chainNetMonDom5,673 cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 gap,120 genscan,81 netBosTau7,673 netHg19,670 netMm10,670 netMonDom5,670 refSeqComposite,450 refSeqComposite,1548 transMapEnsemblV5,589 transMapEstV5,558 transMapRefSeqV5,558 transMapRnaV5,558 transMapV5,664 windowmaskerSdust,56 follows genscan,67 mrna,33 refSeqComposite,895 refSeqComposite,1406 transMapEnsemblV5,98 transMapEnsemblV5,216 transMapEstV5,67 transMapEstV5,185 transMapRefSeqV5,67 transMapRefSeqV5,185 transMapRnaV5,67 transMapRnaV5,185 transMapV5,173 transMapV5,291 xenoRefGene,49 for HLTOGAannotvHg38v1,55 HLTOGAannotvHg38v1,59 augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 chainBosTau7,260 chainBosTau7,276 chainBosTau7,287 chainBosTau7,294 chainBosTau7,495 chainHg19,258 chainHg19,274 chainHg19,285 chainHg19,292 chainHg19,492 chainMm10,258 chainMm10,274 chainMm10,285 chainMm10,292 chainMm10,492 chainMonDom5,258 chainMonDom5,274 chainMonDom5,285 chainMonDom5,292 chainMonDom5,492 chainNetBosTau7,263 chainNetBosTau7,279 chainNetBosTau7,290 chainNetBosTau7,297 chainNetBosTau7,498 chainNetHg19,261 chainNetHg19,277 chainNetHg19,288 chainNetHg19,295 chainNetHg19,495 chainNetMm10,261 chainNetMm10,277 chainNetMm10,288 chainNetMm10,295 chainNetMm10,495 chainNetMonDom5,261 chainNetMonDom5,277 chainNetMonDom5,288 chainNetMonDom5,295 chainNetMonDom5,495 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 cytoBandIdeo,5 gc5BaseBw,64 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,348 mrna,361 mrna,374 nestedRepeats,35 nestedRepeats,239 nestedRepeats,293 nestedRepeats,299 nestedRepeats,311 nestedRepeats,362 netBosTau7,260 netBosTau7,276 netBosTau7,287 netBosTau7,294 netBosTau7,495 netHg19,258 netHg19,274 netHg19,285 netHg19,292 netHg19,492 netMm10,258 netMm10,274 netMm10,285 netMm10,292 netMm10,492 netMonDom5,258 netMonDom5,274 netMonDom5,285 netMonDom5,292 netMonDom5,492 refSeqComposite,42 refSeqComposite,74 refSeqComposite,93 refSeqComposite,108 refSeqComposite,124 refSeqComposite,129 refSeqComposite,236 refSeqComposite,245 refSeqComposite,331 refSeqComposite,395 refSeqComposite,454 refSeqComposite,477 refSeqComposite,541 refSeqComposite,602 refSeqComposite,723 refSeqComposite,747 refSeqComposite,851 refSeqComposite,1182 refSeqComposite,1295 refSeqComposite,1336 refSeqComposite,1446 refSeqComposite,1525 refSeqComposite,1534 refSeqComposite,1665 refSeqComposite,1693 rmsk,25 rmsk,120 rmsk,255 rmsk,300 rmsk,322 rmsk,334 rmsk,385 simpleRepeat,30 simpleRepeat,56 transMapEnsemblV5,41 transMapEnsemblV5,45 transMapEnsemblV5,67 transMapEnsemblV5,102 transMapEnsemblV5,130 transMapEnsemblV5,147 transMapEnsemblV5,190 transMapEnsemblV5,217 transMapEnsemblV5,235 transMapEnsemblV5,266 transMapEnsemblV5,268 transMapEnsemblV5,286 transMapEnsemblV5,290 transMapEnsemblV5,388 transMapEnsemblV5,402 transMapEnsemblV5,411 transMapEnsemblV5,447 transMapEnsemblV5,523 transMapEnsemblV5,538 transMapEnsemblV5,567 transMapEnsemblV5,631 transMapEnsemblV5,635 transMapEnsemblV5,659 transMapEnsemblV5,802 transMapEstV5,36 transMapEstV5,71 transMapEstV5,99 transMapEstV5,116 transMapEstV5,159 transMapEstV5,186 transMapEstV5,204 transMapEstV5,235 transMapEstV5,237 transMapEstV5,255 transMapEstV5,259 transMapEstV5,357 transMapEstV5,371 transMapEstV5,380 transMapEstV5,416 transMapEstV5,492 transMapEstV5,507 transMapEstV5,536 transMapEstV5,600 transMapEstV5,604 transMapEstV5,628 transMapEstV5,771 transMapRefSeqV5,36 transMapRefSeqV5,71 transMapRefSeqV5,99 transMapRefSeqV5,116 transMapRefSeqV5,159 transMapRefSeqV5,186 transMapRefSeqV5,204 transMapRefSeqV5,235 transMapRefSeqV5,237 transMapRefSeqV5,255 transMapRefSeqV5,259 transMapRefSeqV5,357 transMapRefSeqV5,371 transMapRefSeqV5,380 transMapRefSeqV5,416 transMapRefSeqV5,492 transMapRefSeqV5,507 transMapRefSeqV5,536 transMapRefSeqV5,600 transMapRefSeqV5,604 transMapRefSeqV5,628 transMapRefSeqV5,771 transMapRnaV5,36 transMapRnaV5,71 transMapRnaV5,99 transMapRnaV5,116 transMapRnaV5,159 transMapRnaV5,186 transMapRnaV5,204 transMapRnaV5,235 transMapRnaV5,237 transMapRnaV5,255 transMapRnaV5,259 transMapRnaV5,357 transMapRnaV5,371 transMapRnaV5,380 transMapRnaV5,416 transMapRnaV5,492 transMapRnaV5,507 transMapRnaV5,536 transMapRnaV5,600 transMapRnaV5,604 transMapRnaV5,628 transMapRnaV5,771 transMapV5,35 transMapV5,62 transMapV5,96 transMapV5,98 transMapV5,151 transMapV5,177 transMapV5,205 transMapV5,222 transMapV5,265 transMapV5,292 transMapV5,310 transMapV5,341 transMapV5,343 transMapV5,361 transMapV5,365 transMapV5,463 transMapV5,477 transMapV5,486 transMapV5,522 transMapV5,598 transMapV5,613 transMapV5,642 transMapV5,706 transMapV5,710 transMapV5,734 transMapV5,877 ucscToINSDC,45 ucscToRefSeq,39 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 xenoRefGene,20 xenoRefGene,53 xenoRefGene,175 form uniprot,1665 format chainBosTau7,611 chainHg19,608 chainMm10,608 chainMonDom5,608 chainNetBosTau7,614 chainNetHg19,611 chainNetMm10,611 chainNetMonDom5,611 gap,63 gold,62 netBosTau7,611 netHg19,608 netMm10,608 netMonDom5,608 refSeqComposite,1172 refSeqComposite,1362 refSeqComposite,1382 refSeqComposite,1408 refSeqComposite,1422 refSeqComposite,1569 refSeqComposite,1583 refSeqComposite,1591 refSeqComposite,1664 transMapEnsemblV5,420 transMapEstV5,389 transMapRefSeqV5,389 transMapRnaV5,389 transMapV5,495 formats refSeqComposite,1181 uniprot,885 uniprot,1865 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 forth chainBosTau7,444 chainHg19,441 chainMm10,441 chainMonDom5,441 chainNetBosTau7,447 chainNetHg19,444 chainNetMm10,444 chainNetMonDom5,444 netBosTau7,444 netHg19,441 netMm10,441 netMonDom5,441 found augustusGene,100 gold,138 mrna,416 refSeqComposite,1196 refSeqComposite,1395 refSeqComposite,1680 refSeqComposite,1705 transMapEnsemblV5,643 transMapEstV5,612 transMapRefSeqV5,612 transMapRnaV5,612 transMapV5,718 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 four chainBosTau7,512 chainHg19,509 chainMm10,509 chainMonDom5,509 chainNetBosTau7,515 chainNetHg19,512 chainNetMm10,512 chainNetMonDom5,512 netBosTau7,512 netHg19,509 netMm10,509 netMonDom5,509 fragments gold,4 nestedRepeats,3 nestedRepeats,19 nestedRepeats,82 nestedRepeats,101 nestedRepeats,127 nestedRepeats,139 nestedRepeats,191 nestedRepeats,205 nestedRepeats,208 free uniprot,1435 from HLTOGAannotvHg38v1,21 HLTOGAannotvHg38v1,94 HLTOGAannotvHg38v1,330 augustusGene,19 chainBosTau7,178 chainBosTau7,306 chainBosTau7,564 chainBosTau7,587 chainBosTau7,769 chainBosTau7,942 chainBosTau7,974 chainHg19,176 chainHg19,304 chainHg19,561 chainHg19,584 chainHg19,766 chainHg19,939 chainHg19,971 chainMm10,176 chainMm10,304 chainMm10,561 chainMm10,584 chainMm10,766 chainMm10,939 chainMm10,971 chainMonDom5,176 chainMonDom5,304 chainMonDom5,561 chainMonDom5,584 chainMonDom5,766 chainMonDom5,939 chainMonDom5,971 chainNetBosTau7,181 chainNetBosTau7,309 chainNetBosTau7,567 chainNetBosTau7,590 chainNetBosTau7,772 chainNetBosTau7,945 chainNetBosTau7,977 chainNetHg19,179 chainNetHg19,307 chainNetHg19,564 chainNetHg19,587 chainNetHg19,769 chainNetHg19,942 chainNetHg19,974 chainNetMm10,179 chainNetMm10,307 chainNetMm10,564 chainNetMm10,587 chainNetMm10,769 chainNetMm10,942 chainNetMm10,974 chainNetMonDom5,179 chainNetMonDom5,307 chainNetMonDom5,564 chainNetMonDom5,587 chainNetMonDom5,769 chainNetMonDom5,942 chainNetMonDom5,974 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 gap,48 genscan,15 gold,3 gold,47 mrna,7 mrna,449 nestedRepeats,24 nestedRepeats,50 nestedRepeats,72 netBosTau7,178 netBosTau7,306 netBosTau7,564 netBosTau7,587 netBosTau7,769 netBosTau7,942 netBosTau7,974 netHg19,176 netHg19,304 netHg19,561 netHg19,584 netHg19,766 netHg19,939 netHg19,971 netMm10,176 netMm10,304 netMm10,561 netMm10,584 netMm10,766 netMm10,939 netMm10,971 netMonDom5,176 netMonDom5,304 netMonDom5,561 netMonDom5,584 netMonDom5,766 netMonDom5,939 netMonDom5,971 refSeqComposite,5 refSeqComposite,26 refSeqComposite,289 refSeqComposite,295 refSeqComposite,423 refSeqComposite,485 refSeqComposite,843 refSeqComposite,1103 refSeqComposite,1158 refSeqComposite,1167 refSeqComposite,1332 refSeqComposite,1487 refSeqComposite,1515 refSeqComposite,1528 refSeqComposite,1576 refSeqComposite,1597 refSeqComposite,1611 refSeqComposite,1718 rmsk,86 transMapEnsemblV5,29 transMapEnsemblV5,158 transMapEnsemblV5,558 transMapEnsemblV5,621 transMapEnsemblV5,686 transMapEstV5,27 transMapEstV5,127 transMapEstV5,527 transMapEstV5,590 transMapEstV5,655 transMapRefSeqV5,27 transMapRefSeqV5,127 transMapRefSeqV5,527 transMapRefSeqV5,590 transMapRefSeqV5,655 transMapRnaV5,27 transMapRnaV5,127 transMapRnaV5,527 transMapRnaV5,590 transMapRnaV5,655 transMapV5,26 transMapV5,112 transMapV5,233 transMapV5,633 transMapV5,696 transMapV5,761 ucscToINSDC,25 ucscToINSDC,37 ucscToRefSeq,20 ucscToRefSeq,31 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 windowmaskerSdust,41 xenoRefGene,27 xenoRefGene,167 xenoRefGene,287 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 ftp windowmaskerSdust,44 full chainBosTau7,241 chainBosTau7,388 chainHg19,239 chainHg19,385 chainMm10,239 chainMm10,385 chainMonDom5,239 chainMonDom5,385 chainNetBosTau7,244 chainNetBosTau7,391 chainNetHg19,242 chainNetHg19,388 chainNetMm10,242 chainNetMm10,388 chainNetMonDom5,242 chainNetMonDom5,388 nestedRepeats,118 netBosTau7,241 netBosTau7,388 netHg19,239 netHg19,385 netMm10,239 netMm10,385 netMonDom5,239 netMonDom5,385 rmsk,140 transMapEnsemblV5,52 transMapEnsemblV5,280 transMapEstV5,249 transMapRefSeqV5,249 transMapRnaV5,249 transMapV5,355 uniprot,486 uniprot,528 uniprot,540 full-length refSeqComposite,266 functional HLTOGAannotvHg38v1,162 HLTOGAannotvHg38v1,192 HLTOGAannotvHg38v1,269 HLTOGAannotvHg38v1,292 furthermore augustusGene,64 future rmsk,272 g cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 gc5BaseBw,20 microsat,115 refSeqComposite,904 refSeqComposite,956 refSeqComposite,1080 simpleRepeat,75 g-25-100100-90 chainMonDom5,678 chainNetMonDom5,681 netMonDom5,678 g-31-125100-114 chainBosTau7,681 chainHg19,678 chainMm10,678 chainNetBosTau7,684 chainNetHg19,681 chainNetMm10,681 netBosTau7,681 netHg19,678 netMm10,678 galgal6 HLTOGAannotvHg38v1,58 gambiae augustusGene,219 gap chainBosTau7,79 chainBosTau7,89 chainBosTau7,190 chainBosTau7,481 chainBosTau7,493 chainBosTau7,516 chainBosTau7,534 chainBosTau7,549 chainBosTau7,566 chainBosTau7,705 chainBosTau7,836 chainHg19,77 chainHg19,87 chainHg19,188 chainHg19,478 chainHg19,490 chainHg19,513 chainHg19,531 chainHg19,546 chainHg19,563 chainHg19,702 chainHg19,833 chainMm10,77 chainMm10,87 chainMm10,188 chainMm10,478 chainMm10,490 chainMm10,513 chainMm10,531 chainMm10,546 chainMm10,563 chainMm10,702 chainMm10,833 chainMonDom5,77 chainMonDom5,87 chainMonDom5,188 chainMonDom5,478 chainMonDom5,490 chainMonDom5,513 chainMonDom5,531 chainMonDom5,546 chainMonDom5,563 chainMonDom5,702 chainMonDom5,833 chainNetBosTau7,82 chainNetBosTau7,92 chainNetBosTau7,193 chainNetBosTau7,484 chainNetBosTau7,496 chainNetBosTau7,519 chainNetBosTau7,537 chainNetBosTau7,552 chainNetBosTau7,569 chainNetBosTau7,708 chainNetBosTau7,839 chainNetHg19,80 chainNetHg19,90 chainNetHg19,191 chainNetHg19,481 chainNetHg19,493 chainNetHg19,516 chainNetHg19,534 chainNetHg19,549 chainNetHg19,566 chainNetHg19,705 chainNetHg19,836 chainNetMm10,80 chainNetMm10,90 chainNetMm10,191 chainNetMm10,481 chainNetMm10,493 chainNetMm10,516 chainNetMm10,534 chainNetMm10,549 chainNetMm10,566 chainNetMm10,705 chainNetMm10,836 chainNetMonDom5,80 chainNetMonDom5,90 chainNetMonDom5,191 chainNetMonDom5,481 chainNetMonDom5,493 chainNetMonDom5,516 chainNetMonDom5,534 chainNetMonDom5,549 chainNetMonDom5,566 chainNetMonDom5,705 chainNetMonDom5,836 gap,1 gap,2 gap,91 gap,102 gap,115 mrna,369 netBosTau7,79 netBosTau7,89 netBosTau7,190 netBosTau7,481 netBosTau7,493 netBosTau7,516 netBosTau7,534 netBosTau7,549 netBosTau7,566 netBosTau7,705 netBosTau7,836 netHg19,77 netHg19,87 netHg19,188 netHg19,478 netHg19,490 netHg19,513 netHg19,531 netHg19,546 netHg19,563 netHg19,702 netHg19,833 netMm10,77 netMm10,87 netMm10,188 netMm10,478 netMm10,490 netMm10,513 netMm10,531 netMm10,546 netMm10,563 netMm10,702 netMm10,833 netMonDom5,77 netMonDom5,87 netMonDom5,188 netMonDom5,478 netMonDom5,490 netMonDom5,513 netMonDom5,531 netMonDom5,546 netMonDom5,563 netMonDom5,702 netMonDom5,833 refSeqComposite,930 refSeqComposite,963 refSeqComposite,1019 refSeqComposite,1021 transMapEnsemblV5,142 transMapEstV5,111 transMapRefSeqV5,111 transMapRnaV5,111 transMapV5,217 gapless chainBosTau7,648 chainHg19,645 chainMm10,645 chainMonDom5,645 chainNetBosTau7,651 chainNetHg19,648 chainNetMm10,648 chainNetMonDom5,648 netBosTau7,648 netHg19,645 netMm10,645 netMonDom5,645 gaps HLTOGAannotvHg38v1,210 chainBosTau7,85 chainBosTau7,96 chainBosTau7,108 chainBosTau7,142 chainBosTau7,167 chainBosTau7,213 chainBosTau7,224 chainBosTau7,408 chainBosTau7,430 chainBosTau7,457 chainBosTau7,891 chainBosTau7,897 chainHg19,83 chainHg19,94 chainHg19,106 chainHg19,140 chainHg19,165 chainHg19,211 chainHg19,222 chainHg19,405 chainHg19,427 chainHg19,454 chainHg19,888 chainHg19,894 chainMm10,83 chainMm10,94 chainMm10,106 chainMm10,140 chainMm10,165 chainMm10,211 chainMm10,222 chainMm10,405 chainMm10,427 chainMm10,454 chainMm10,888 chainMm10,894 chainMonDom5,83 chainMonDom5,94 chainMonDom5,106 chainMonDom5,140 chainMonDom5,165 chainMonDom5,211 chainMonDom5,222 chainMonDom5,405 chainMonDom5,427 chainMonDom5,454 chainMonDom5,888 chainMonDom5,894 chainNetBosTau7,88 chainNetBosTau7,99 chainNetBosTau7,111 chainNetBosTau7,145 chainNetBosTau7,170 chainNetBosTau7,216 chainNetBosTau7,227 chainNetBosTau7,411 chainNetBosTau7,433 chainNetBosTau7,460 chainNetBosTau7,894 chainNetBosTau7,900 chainNetHg19,86 chainNetHg19,97 chainNetHg19,109 chainNetHg19,143 chainNetHg19,168 chainNetHg19,214 chainNetHg19,225 chainNetHg19,408 chainNetHg19,430 chainNetHg19,457 chainNetHg19,891 chainNetHg19,897 chainNetMm10,86 chainNetMm10,97 chainNetMm10,109 chainNetMm10,143 chainNetMm10,168 chainNetMm10,214 chainNetMm10,225 chainNetMm10,408 chainNetMm10,430 chainNetMm10,457 chainNetMm10,891 chainNetMm10,897 chainNetMonDom5,86 chainNetMonDom5,97 chainNetMonDom5,109 chainNetMonDom5,143 chainNetMonDom5,168 chainNetMonDom5,214 chainNetMonDom5,225 chainNetMonDom5,408 chainNetMonDom5,430 chainNetMonDom5,457 chainNetMonDom5,891 chainNetMonDom5,897 gap,12 gap,43 gap,68 gap,124 gap,126 gold,96 netBosTau7,85 netBosTau7,96 netBosTau7,108 netBosTau7,142 netBosTau7,167 netBosTau7,213 netBosTau7,224 netBosTau7,408 netBosTau7,430 netBosTau7,457 netBosTau7,891 netBosTau7,897 netHg19,83 netHg19,94 netHg19,106 netHg19,140 netHg19,165 netHg19,211 netHg19,222 netHg19,405 netHg19,427 netHg19,454 netHg19,888 netHg19,894 netMm10,83 netMm10,94 netMm10,106 netMm10,140 netMm10,165 netMm10,211 netMm10,222 netMm10,405 netMm10,427 netMm10,454 netMm10,888 netMm10,894 netMonDom5,83 netMonDom5,94 netMonDom5,106 netMonDom5,140 netMonDom5,165 netMonDom5,211 netMonDom5,222 netMonDom5,405 netMonDom5,427 netMonDom5,454 netMonDom5,888 netMonDom5,894 refSeqComposite,933 refSeqComposite,1024 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary microsat,111 simpleRepeat,71 gasteiger uniprot,2020 gattiker uniprot,2016 gbdb refSeqComposite,1553 transMapEnsemblV5,664 transMapEstV5,633 transMapRefSeqV5,633 transMapRnaV5,633 transMapV5,739 uniprot,1815 gc cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 gc5BaseBw,1 gc5BaseBw,3 gc5BaseBw,13 gc5BaseBw,30 genbank mrna,8 mrna,23 mrna,387 mrna,478 mrna,502 transMapEnsemblV5,172 transMapEnsemblV5,175 transMapEstV5,16 transMapEstV5,141 transMapEstV5,144 transMapRefSeqV5,141 transMapRefSeqV5,144 transMapRnaV5,4 transMapRnaV5,17 transMapRnaV5,141 transMapRnaV5,144 transMapV5,247 transMapV5,250 uniprot,376 gencode transMapEnsemblV5,6 transMapEnsemblV5,18 transMapEnsemblV5,38 transMapEnsemblV5,710 transMapEstV5,679 transMapRefSeqV5,679 transMapRnaV5,679 transMapV5,785 uniprot,730 gene HLTOGAannotvHg38v1,13 HLTOGAannotvHg38v1,30 HLTOGAannotvHg38v1,47 HLTOGAannotvHg38v1,357 augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 ncbiRefSeq,17 ncbiRefSeqCurated,15 ncbiRefSeqGenomicDiff,14 ncbiRefSeqOther,17 ncbiRefSeqPredicted,13 ncbiRefSeqPsl,9 refSeqComposite,9 refSeqComposite,109 refSeqComposite,135 refSeqComposite,411 refSeqComposite,544 refSeqComposite,562 refSeqComposite,603 refSeqComposite,771 refSeqComposite,789 refSeqComposite,801 refSeqComposite,832 refSeqComposite,861 transMapEnsemblV5,12 transMapEnsemblV5,53 transMapEnsemblV5,59 transMapEnsemblV5,393 transMapEnsemblV5,776 transMapEstV5,10 transMapEstV5,362 transMapEstV5,745 transMapRefSeqV5,5 transMapRefSeqV5,11 transMapRefSeqV5,18 transMapRefSeqV5,362 transMapRefSeqV5,745 transMapRnaV5,11 transMapRnaV5,362 transMapRnaV5,745 transMapV5,9 transMapV5,17 transMapV5,468 transMapV5,851 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 xenoRefGene,185 gene-inactivating HLTOGAannotvHg38v1,156 gene-rich gc5BaseBw,36 genedx uniprot,1973 genepred refSeqComposite,1177 refSeqComposite,1407 refSeqComposite,1582 genepredtogtf refSeqComposite,1594 refSeqComposite,1617 refSeqComposite,1624 generally rmsk,72 uniprot,248 generate nestedRepeats,261 nestedRepeats,320 rmsk,343 generated cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 nestedRepeats,282 refSeqComposite,484 refSeqComposite,1203 refSeqComposite,1720 rmsk,289 xenoRefGene,291 generating augustusGene,189 genes HLTOGAannotvHg38v1,11 HLTOGAannotvHg38v1,36 HLTOGAannotvHg38v1,101 augustusGene,8 augustusGene,44 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 genscan,2 genscan,6 genscan,59 ncbiRefSeq,5 ncbiRefSeq,15 ncbiRefSeqCurated,5 ncbiRefSeqCurated,13 ncbiRefSeqGenomicDiff,12 ncbiRefSeqOther,15 ncbiRefSeqPredicted,5 ncbiRefSeqPredicted,11 ncbiRefSeqPsl,7 refSeqComposite,4 refSeqComposite,7 refSeqComposite,15 refSeqComposite,24 refSeqComposite,139 refSeqComposite,238 refSeqComposite,432 refSeqComposite,510 refSeqComposite,1215 refSeqComposite,1226 simpleRepeat,41 transMapEnsemblV5,10 transMapEnsemblV5,88 transMapEnsemblV5,171 transMapEnsemblV5,185 transMapEnsemblV5,292 transMapEnsemblV5,806 transMapEstV5,8 transMapEstV5,57 transMapEstV5,140 transMapEstV5,154 transMapEstV5,261 transMapEstV5,775 transMapRefSeqV5,9 transMapRefSeqV5,57 transMapRefSeqV5,140 transMapRefSeqV5,154 transMapRefSeqV5,261 transMapRefSeqV5,775 transMapRnaV5,9 transMapRnaV5,57 transMapRnaV5,140 transMapRnaV5,154 transMapRnaV5,261 transMapRnaV5,775 transMapV5,7 transMapV5,58 transMapV5,73 transMapV5,246 transMapV5,260 transMapV5,367 transMapV5,881 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,194 xenoRefGene,202 xenoRefGene,213 genet nestedRepeats,354 nestedRepeats,386 nestedRepeats,408 rmsk,377 rmsk,409 rmsk,431 genetic nestedRepeats,52 rmsk,88 genome HLTOGAannotvHg38v1,22 HLTOGAannotvHg38v1,64 HLTOGAannotvHg38v1,71 augustusGene,31 chainBosTau7,20 chainBosTau7,76 chainBosTau7,208 chainBosTau7,283 chainBosTau7,296 chainBosTau7,790 chainBosTau7,1111 chainHg19,19 chainHg19,74 chainHg19,206 chainHg19,281 chainHg19,294 chainHg19,787 chainHg19,1108 chainMm10,19 chainMm10,74 chainMm10,206 chainMm10,281 chainMm10,294 chainMm10,787 chainMm10,1108 chainMonDom5,19 chainMonDom5,74 chainMonDom5,206 chainMonDom5,281 chainMonDom5,294 chainMonDom5,787 chainMonDom5,1108 chainNetBosTau7,23 chainNetBosTau7,79 chainNetBosTau7,211 chainNetBosTau7,286 chainNetBosTau7,299 chainNetBosTau7,793 chainNetBosTau7,1114 chainNetHg19,22 chainNetHg19,77 chainNetHg19,209 chainNetHg19,284 chainNetHg19,297 chainNetHg19,790 chainNetHg19,1111 chainNetMm10,22 chainNetMm10,77 chainNetMm10,209 chainNetMm10,284 chainNetMm10,297 chainNetMm10,790 chainNetMm10,1111 chainNetMonDom5,22 chainNetMonDom5,77 chainNetMonDom5,209 chainNetMonDom5,284 chainNetMonDom5,297 chainNetMonDom5,790 chainNetMonDom5,1111 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 gap,19 gap,21 gold,21 gold,23 gold,151 mrna,26 mrna,395 mrna,525 ncbiRefSeqGenomicDiff,11 nestedRepeats,405 netBosTau7,20 netBosTau7,76 netBosTau7,208 netBosTau7,283 netBosTau7,296 netBosTau7,790 netBosTau7,1111 netHg19,19 netHg19,74 netHg19,206 netHg19,281 netHg19,294 netHg19,787 netHg19,1108 netMm10,19 netMm10,74 netMm10,206 netMm10,281 netMm10,294 netMm10,787 netMm10,1108 netMonDom5,19 netMonDom5,74 netMonDom5,206 netMonDom5,281 netMonDom5,294 netMonDom5,787 netMonDom5,1108 refSeqComposite,57 refSeqComposite,291 refSeqComposite,299 refSeqComposite,308 refSeqComposite,326 refSeqComposite,370 refSeqComposite,444 refSeqComposite,467 refSeqComposite,500 refSeqComposite,881 refSeqComposite,928 refSeqComposite,978 refSeqComposite,1064 refSeqComposite,1077 refSeqComposite,1111 refSeqComposite,1124 refSeqComposite,1186 refSeqComposite,1236 refSeqComposite,1450 refSeqComposite,1739 rmsk,428 transMapEnsemblV5,36 transMapEnsemblV5,164 transMapEnsemblV5,181 transMapEnsemblV5,206 transMapEnsemblV5,336 transMapEnsemblV5,347 transMapEnsemblV5,408 transMapEnsemblV5,418 transMapEnsemblV5,452 transMapEnsemblV5,475 transMapEnsemblV5,608 transMapEnsemblV5,746 transMapEstV5,34 transMapEstV5,133 transMapEstV5,150 transMapEstV5,175 transMapEstV5,305 transMapEstV5,316 transMapEstV5,377 transMapEstV5,387 transMapEstV5,421 transMapEstV5,444 transMapEstV5,577 transMapEstV5,715 transMapRefSeqV5,34 transMapRefSeqV5,133 transMapRefSeqV5,150 transMapRefSeqV5,175 transMapRefSeqV5,305 transMapRefSeqV5,316 transMapRefSeqV5,377 transMapRefSeqV5,387 transMapRefSeqV5,421 transMapRefSeqV5,444 transMapRefSeqV5,577 transMapRefSeqV5,715 transMapRnaV5,34 transMapRnaV5,133 transMapRnaV5,150 transMapRnaV5,175 transMapRnaV5,305 transMapRnaV5,316 transMapRnaV5,377 transMapRnaV5,387 transMapRnaV5,421 transMapRnaV5,444 transMapRnaV5,577 transMapRnaV5,715 transMapV5,33 transMapV5,85 transMapV5,239 transMapV5,256 transMapV5,281 transMapV5,411 transMapV5,422 transMapV5,483 transMapV5,493 transMapV5,527 transMapV5,550 transMapV5,683 transMapV5,821 ucscToINSDC,18 ucscToRefSeq,13 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoRefGene,226 xenoRefGene,309 genome-wide refSeqComposite,1502 genome.bed uniprot,1935 uniprot,1937 genomes chainBosTau7,26 chainBosTau7,592 chainBosTau7,1073 chainHg19,25 chainHg19,589 chainHg19,1070 chainMm10,25 chainMm10,589 chainMm10,1070 chainMonDom5,25 chainMonDom5,589 chainMonDom5,1070 chainNetBosTau7,29 chainNetBosTau7,595 chainNetBosTau7,1076 chainNetHg19,28 chainNetHg19,592 chainNetHg19,1073 chainNetMm10,28 chainNetMm10,592 chainNetMm10,1073 chainNetMonDom5,28 chainNetMonDom5,592 chainNetMonDom5,1073 cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 nestedRepeats,369 nestedRepeats,383 netBosTau7,26 netBosTau7,592 netBosTau7,1073 netHg19,25 netHg19,589 netHg19,1070 netMm10,25 netMm10,589 netMm10,1070 netMonDom5,25 netMonDom5,589 netMonDom5,1070 refSeqComposite,573 refSeqComposite,1808 rmsk,392 rmsk,406 transMapEnsemblV5,364 transMapEnsemblV5,372 transMapEstV5,333 transMapEstV5,341 transMapRefSeqV5,333 transMapRefSeqV5,341 transMapRnaV5,333 transMapRnaV5,341 transMapV5,439 transMapV5,447 uniprot,863 uniprot,941 windowmaskerSdust,105 xenoRefGene,378 genomic HLTOGAannotvHg38v1,122 chainBosTau7,500 chainBosTau7,1025 chainBosTau7,1041 chainHg19,497 chainHg19,1022 chainHg19,1038 chainMm10,497 chainMm10,1022 chainMm10,1038 chainMonDom5,497 chainMonDom5,1022 chainMonDom5,1038 chainNetBosTau7,503 chainNetBosTau7,1028 chainNetBosTau7,1044 chainNetHg19,500 chainNetHg19,1025 chainNetHg19,1041 chainNetMm10,500 chainNetMm10,1025 chainNetMm10,1041 chainNetMonDom5,500 chainNetMonDom5,1025 chainNetMonDom5,1041 genscan,92 genscan,218 mrna,346 mrna,437 netBosTau7,500 netBosTau7,1025 netBosTau7,1041 netHg19,497 netHg19,1022 netHg19,1038 netMm10,497 netMm10,1022 netMm10,1038 netMonDom5,497 netMonDom5,1022 netMonDom5,1038 refSeqComposite,840 refSeqComposite,908 refSeqComposite,932 refSeqComposite,1023 refSeqComposite,1081 refSeqComposite,1286 transMapEnsemblV5,128 transMapEstV5,97 transMapRefSeqV5,97 transMapRnaV5,97 transMapV5,203 uniprot,28 uniprot,450 windowmaskerSdust,3 xenoRefGene,164 xenoRefGene,276 genomics chainBosTau7,12 chainHg19,11 chainMm10,11 chainMonDom5,11 chainNetBosTau7,15 chainNetBosTau7Viewchain,13 chainNetBosTau7Viewnet,13 chainNetHg19,14 chainNetHg19Viewchain,12 chainNetHg19Viewnet,12 chainNetMm10,14 chainNetMm10Viewchain,12 chainNetMm10Viewnet,12 chainNetMonDom5,14 chainNetMonDom5Viewchain,12 chainNetMonDom5Viewnet,12 netBosTau7,12 netHg19,11 netMm10,11 netMonDom5,11 transMapEnsemblV5,745 transMapEnsemblV5,800 transMapEstV5,714 transMapEstV5,769 transMapRefSeqV5,714 transMapRefSeqV5,769 transMapRnaV5,714 transMapRnaV5,769 transMapV5,820 transMapV5,875 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 gertz windowmaskerSdust,92 gff refSeqComposite,1170 giri nestedRepeats,56 nestedRepeats,310 rmsk,92 rmsk,333 github uniprot,1559 github.com HLTOGAannotvHg38v1,331 give transMapEnsemblV5,440 transMapEstV5,409 transMapRefSeqV5,409 transMapRnaV5,409 transMapV5,515 given refSeqComposite,1542 transMapEnsemblV5,484 transMapEnsemblV5,657 transMapEstV5,453 transMapEstV5,626 transMapRefSeqV5,453 transMapRefSeqV5,626 transMapRnaV5,453 transMapRnaV5,626 transMapV5,559 transMapV5,732 uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 global transMapEnsemblV5,357 transMapEstV5,326 transMapRefSeqV5,326 transMapRnaV5,326 transMapV5,432 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 gnomon refSeqComposite,375 go genscan,113 mrna,354 mrna,377 refSeqComposite,857 uniprot,1412 xenoRefGene,181 gold gold,91 gold,105 goldenpath uniprot,1907 gr refSeqComposite,1753 xenoRefGene,323 graph gc5BaseBw,59 gc5BaseBw,78 graphical chainBosTau7,447 chainHg19,444 chainMm10,444 chainMonDom5,444 chainNetBosTau7,450 chainNetHg19,447 chainNetMm10,447 chainNetMonDom5,447 gold,130 netBosTau7,447 netHg19,444 netMm10,444 netMonDom5,444 rmsk,211 grch37 chainHg19,6 chainHg19,68 chainHg19,308 chainNetHg19,7 chainNetHg19,71 chainNetHg19,311 chainNetHg19Viewchain,5 chainNetHg19Viewnet,5 netHg19,6 netHg19,68 netHg19,308 grcm38 chainMm10,6 chainMm10,68 chainMm10,308 chainNetMm10,7 chainNetMm10,71 chainNetMm10,311 chainNetMm10Viewchain,5 chainNetMm10Viewnet,5 netMm10,6 netMm10,68 netMm10,308 greater cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 nestedRepeats,328 rmsk,351 uniprot,588 uniprot,593 group augustusGene,198 augustusGene,235 chainBosTau7,640 chainHg19,637 chainMm10,637 chainMonDom5,637 chainNetBosTau7,643 chainNetHg19,640 chainNetMm10,640 chainNetMonDom5,640 netBosTau7,640 netHg19,637 netMm10,637 netMonDom5,637 refSeqComposite,388 refSeqComposite,449 uniprot,430 groups augustusGene,194 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 uniprot,907 uniprot,909 uniprot,1930 gtf refSeqComposite,1568 refSeqComposite,1578 refSeqComposite,1590 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5BaseBw,21 h uniprot,2013 had transMapEnsemblV5,195 transMapEstV5,164 transMapRefSeqV5,164 transMapRnaV5,164 transMapV5,270 haeussler uniprot,1945 handful uniprot,1180 haplotype uniprot,852 hard cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 hardison chainBosTau7,944 chainBosTau7,1101 chainHg19,941 chainHg19,1098 chainMm10,941 chainMm10,1098 chainMonDom5,941 chainMonDom5,1098 chainNetBosTau7,947 chainNetBosTau7,1104 chainNetHg19,944 chainNetHg19,1101 chainNetMm10,944 chainNetMm10,1101 chainNetMonDom5,944 chainNetMonDom5,1101 netBosTau7,944 netBosTau7,1101 netHg19,941 netHg19,1098 netMm10,941 netMm10,1098 netMonDom5,941 netMonDom5,1098 harris chainBosTau7,1018 chainHg19,1015 chainMm10,1015 chainMonDom5,1015 chainNetBosTau7,1021 chainNetHg19,1018 chainNetMm10,1018 chainNetMonDom5,1018 netBosTau7,1018 netHg19,1015 netMm10,1015 netMonDom5,1015 hart refSeqComposite,1764 xenoRefGene,334 has mrna,63 nestedRepeats,246 refSeqComposite,617 refSeqComposite,638 refSeqComposite,674 refSeqComposite,686 refSeqComposite,699 refSeqComposite,818 transMapV5,146 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoRefGene,68 haussler augustusGene,292 chainBosTau7,979 chainBosTau7,1059 chainBosTau7,1103 chainHg19,976 chainHg19,1056 chainHg19,1100 chainMm10,976 chainMm10,1056 chainMm10,1100 chainMonDom5,976 chainMonDom5,1056 chainMonDom5,1100 chainNetBosTau7,982 chainNetBosTau7,1062 chainNetBosTau7,1106 chainNetHg19,979 chainNetHg19,1059 chainNetHg19,1103 chainNetMm10,979 chainNetMm10,1059 chainNetMm10,1103 chainNetMonDom5,979 chainNetMonDom5,1059 chainNetMonDom5,1103 netBosTau7,979 netBosTau7,1059 netBosTau7,1103 netHg19,976 netHg19,1056 netHg19,1100 netMm10,976 netMm10,1056 netMm10,1100 netMonDom5,976 netMonDom5,1056 netMonDom5,1100 transMapEnsemblV5,763 transMapEnsemblV5,797 transMapEstV5,732 transMapEstV5,766 transMapRefSeqV5,732 transMapRefSeqV5,766 transMapRnaV5,732 transMapRnaV5,766 transMapV5,838 transMapV5,872 have chainBosTau7,576 chainHg19,573 chainMm10,573 chainMonDom5,573 chainNetBosTau7,579 chainNetHg19,576 chainNetMm10,576 chainNetMonDom5,576 nestedRepeats,88 netBosTau7,576 netHg19,573 netMm10,573 netMonDom5,573 rmsk,69 rmsk,108 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 mrna,410 mrna,419 refSeqComposite,1259 refSeqComposite,1268 xenoRefGene,249 xenoRefGene,258 heavily uniprot,1533 helices uniprot,366 help cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 gc5BaseBw,61 refSeqComposite,125 helpful mrna,91 helps cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 here refSeqComposite,994 refSeqComposite,1197 refSeqComposite,1469 refSeqComposite,1491 refSeqComposite,1685 rmsk,127 transMapEnsemblV5,137 transMapEnsemblV5,151 transMapEnsemblV5,644 transMapEstV5,106 transMapEstV5,120 transMapEstV5,613 transMapRefSeqV5,106 transMapRefSeqV5,120 transMapRefSeqV5,613 transMapRnaV5,106 transMapRnaV5,120 transMapRnaV5,613 transMapV5,212 transMapV5,226 transMapV5,719 uniprot,1795 hg.conf refSeqComposite,1640 hg19 chainHg19,7 chainHg19,69 chainHg19,309 chainNetHg19,8 chainNetHg19,72 chainNetHg19,312 chainNetHg19Viewchain,6 chainNetHg19Viewnet,6 netHg19,7 netHg19,69 netHg19,309 refSeqComposite,574 uniprot,847 uniprot,860 hg38 HLTOGAannotvHg38v1,3 HLTOGAannotvHg38v1,8 HLTOGAannotvHg38v1,54 refSeqComposite,518 refSeqComposite,576 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 refSeqComposite,1552 transMapEnsemblV5,663 transMapEstV5,632 transMapRefSeqV5,632 transMapRnaV5,632 transMapV5,738 uniprot,1814 uniprot,1906 uniprot,1916 hgmd refSeqComposite,550 hgvs refSeqComposite,903 refSeqComposite,916 refSeqComposite,955 refSeqComposite,984 refSeqComposite,1043 refSeqComposite,1070 refSeqComposite,1074 refSeqComposite,1094 hiatt refSeqComposite,1754 xenoRefGene,324 hidden augustusGene,324 uniprot,182 uniprot,223 hide refSeqComposite,175 uniprot,659 uniprot,667 xenoRefGene,192 hierarchy chainBosTau7,827 chainHg19,824 chainMm10,824 chainMonDom5,824 chainNetBosTau7,830 chainNetHg19,827 chainNetMm10,827 chainNetMonDom5,827 netBosTau7,827 netHg19,824 netMm10,824 netMonDom5,824 high gc5BaseBw,29 transMapV5,119 higher chainBosTau7,859 chainHg19,856 chainMm10,856 chainMonDom5,856 chainNetBosTau7,862 chainNetHg19,859 chainNetMm10,859 chainNetMonDom5,859 cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 netBosTau7,859 netHg19,856 netMm10,856 netMonDom5,856 rmsk,230 transMapV5,147 higher-level chainBosTau7,876 chainHg19,873 chainMm10,873 chainMonDom5,873 chainNetBosTau7,879 chainNetHg19,876 chainNetMm10,876 chainNetMonDom5,876 netBosTau7,876 netHg19,873 netMm10,873 netMonDom5,873 higher-scoring chainBosTau7,820 chainBosTau7,839 chainHg19,817 chainHg19,836 chainMm10,817 chainMm10,836 chainMonDom5,817 chainMonDom5,836 chainNetBosTau7,823 chainNetBosTau7,842 chainNetHg19,820 chainNetHg19,839 chainNetMm10,820 chainNetMm10,839 chainNetMonDom5,820 chainNetMonDom5,839 netBosTau7,820 netBosTau7,839 netHg19,817 netHg19,836 netMm10,817 netMm10,836 netMonDom5,817 netMonDom5,836 highest mrna,412 refSeqComposite,1261 uniprot,948 uniprot,1113 xenoRefGene,251 highest-scoring chainBosTau7,399 chainBosTau7,786 chainHg19,396 chainHg19,783 chainMm10,396 chainMm10,783 chainMonDom5,396 chainMonDom5,783 chainNetBosTau7,402 chainNetBosTau7,789 chainNetHg19,399 chainNetHg19,786 chainNetMm10,399 chainNetMm10,786 chainNetMonDom5,399 chainNetMonDom5,786 netBosTau7,399 netBosTau7,786 netHg19,396 netHg19,783 netMm10,396 netMm10,783 netMonDom5,396 netMonDom5,783 highlight gc5BaseBw,49 mrna,282 highlighted mrna,252 mrna,270 uniprot,580 highly microsat,40 hilgers HLTOGAannotvHg38v1,352 hiller HLTOGAannotvHg38v1,322 hillerlab HLTOGAannotvHg38v1,332 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 hinrichs chainBosTau7,1055 chainHg19,1052 chainMm10,1052 chainMonDom5,1052 chainNetBosTau7,1058 chainNetHg19,1055 chainNetMm10,1055 chainNetMonDom5,1055 netBosTau7,1055 netHg19,1052 netMm10,1052 netMonDom5,1052 hiram gc5BaseBw,82 ucscToINSDC,51 ucscToRefSeq,45 his chainBosTau7,953 chainHg19,950 chainMm10,950 chainMonDom5,950 chainNetBosTau7,956 chainNetHg19,953 chainNetMm10,953 chainNetMonDom5,953 netBosTau7,953 netHg19,950 netMm10,950 netMonDom5,950 homology-based HLTOGAannotvHg38v1,26 honeybee1 augustusGene,217 horizontal nestedRepeats,130 nestedRepeats,150 hou chainBosTau7,932 chainHg19,929 chainMm10,929 chainMonDom5,929 chainNetBosTau7,935 chainNetHg19,932 chainNetMm10,932 chainNetMonDom5,932 netBosTau7,932 netHg19,929 netMm10,929 netMonDom5,929 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 how chainBosTau7,887 chainBosTau7,904 chainHg19,884 chainHg19,901 chainMm10,884 chainMm10,901 chainMonDom5,884 chainMonDom5,901 chainNetBosTau7,890 chainNetBosTau7,907 chainNetHg19,887 chainNetHg19,904 chainNetMm10,887 chainNetMm10,904 chainNetMonDom5,887 chainNetMonDom5,904 netBosTau7,887 netBosTau7,904 netHg19,884 netHg19,901 netMm10,884 netMm10,901 netMonDom5,884 netMonDom5,901 refSeqComposite,97 rmsk,121 however cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 transMapEnsemblV5,488 transMapEstV5,457 transMapRefSeqV5,457 transMapRnaV5,457 transMapV5,563 hox refSeqComposite,415 http cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 nestedRepeats,332 refSeqComposite,1551 rmsk,355 transMapEnsemblV5,662 transMapEstV5,631 transMapRefSeqV5,631 transMapRnaV5,631 transMapV5,737 uniprot,1813 https uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hubley nestedRepeats,308 nestedRepeats,326 rmsk,331 rmsk,349 hum uniprot,2043 human HLTOGAannotvHg38v1,7 HLTOGAannotvHg38v1,53 augustusGene,205 augustusGene,210 augustusGene,276 chainBosTau7,1072 chainHg19,1 chainHg19,3 chainHg19,65 chainHg19,97 chainHg19,150 chainHg19,270 chainHg19,297 chainHg19,578 chainHg19,627 chainHg19,1069 chainMm10,1069 chainMonDom5,1069 chainNetBosTau7,1075 chainNetHg19,1 chainNetHg19,4 chainNetHg19,68 chainNetHg19,100 chainNetHg19,153 chainNetHg19,273 chainNetHg19,300 chainNetHg19,581 chainNetHg19,630 chainNetHg19,1072 chainNetHg19Viewchain,2 chainNetHg19Viewnet,2 chainNetMm10,1072 chainNetMonDom5,1072 genscan,217 nestedRepeats,404 netBosTau7,1072 netHg19,1 netHg19,3 netHg19,65 netHg19,97 netHg19,150 netHg19,270 netHg19,297 netHg19,578 netHg19,627 netHg19,1069 netMm10,1069 netMonDom5,1069 refSeqComposite,246 refSeqComposite,298 refSeqComposite,561 refSeqComposite,572 refSeqComposite,1076 rmsk,427 transMapEnsemblV5,42 transMapEnsemblV5,365 transMapEnsemblV5,474 transMapEnsemblV5,741 transMapEnsemblV5,809 transMapEstV5,334 transMapEstV5,443 transMapEstV5,710 transMapEstV5,778 transMapRefSeqV5,334 transMapRefSeqV5,443 transMapRefSeqV5,710 transMapRefSeqV5,778 transMapRnaV5,334 transMapRnaV5,443 transMapRnaV5,710 transMapRnaV5,778 transMapV5,105 transMapV5,134 transMapV5,440 transMapV5,549 transMapV5,816 transMapV5,884 uniprot,699 uniprot,940 uniprot,2040 human-mouse chainBosTau7,1107 chainHg19,1104 chainMm10,1104 chainMonDom5,1104 chainNetBosTau7,1110 chainNetHg19,1107 chainNetMm10,1107 chainNetMonDom5,1107 netBosTau7,1107 netHg19,1104 netMm10,1104 netMonDom5,1104 i mrna,471 mrna,495 icon refSeqComposite,754 id nestedRepeats,10 nestedRepeats,106 refSeqComposite,1133 uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical uniprot,1106 uniprot,1144 uniprot,1147 identified chainBosTau7,948 chainHg19,945 chainMm10,945 chainMonDom5,945 chainNetBosTau7,951 chainNetHg19,948 chainNetMm10,948 chainNetMonDom5,948 netBosTau7,948 netHg19,945 netMm10,945 netMonDom5,945 refSeqComposite,1265 transMapEnsemblV5,515 transMapEstV5,484 transMapRefSeqV5,484 transMapRnaV5,484 transMapV5,590 xenoRefGene,255 identifier refSeqComposite,785 refSeqComposite,804 transMapEnsemblV5,486 transMapEstV5,455 transMapRefSeqV5,455 transMapRnaV5,455 transMapV5,561 identifiers transMapEnsemblV5,387 transMapEnsemblV5,446 transMapEnsemblV5,464 transMapEstV5,356 transMapEstV5,415 transMapEstV5,433 transMapRefSeqV5,356 transMapRefSeqV5,415 transMapRefSeqV5,433 transMapRnaV5,356 transMapRnaV5,415 transMapRnaV5,433 transMapV5,462 transMapV5,521 transMapV5,539 ucscToRefSeq,19 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 identity microsat,71 mrna,414 mrna,422 mrna,434 nestedRepeats,187 nestedRepeats,222 refSeqComposite,1263 refSeqComposite,1271 refSeqComposite,1283 xenoRefGene,253 xenoRefGene,261 xenoRefGene,273 ideogram cytoBandIdeo,3 cytoBandIdeo,4 ids uniprot,1292 if gap,77 mrna,225 mrna,237 mrna,253 mrna,289 mrna,306 nestedRepeats,137 transMapEnsemblV5,246 transMapEstV5,215 transMapRefSeqV5,215 transMapRnaV5,215 transMapV5,321 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoRefGene,205 ignored refSeqComposite,1456 uniprot,1426 ii215-25 augustusGene,338 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 imperfect simpleRepeat,19 implements HLTOGAannotvHg38v1,73 important uniprot,900 improve augustusGene,302 transMapEnsemblV5,773 transMapEstV5,742 transMapRefSeqV5,742 transMapRnaV5,742 transMapV5,848 improved chainBosTau7,1021 chainHg19,1018 chainMm10,1018 chainMonDom5,1018 chainNetBosTau7,1024 chainNetHg19,1021 chainNetMm10,1021 chainNetMonDom5,1021 netBosTau7,1021 netHg19,1018 netMm10,1018 netMonDom5,1018 in HLTOGAannotvHg38v1,119 HLTOGAannotvHg38v1,124 HLTOGAannotvHg38v1,137 HLTOGAannotvHg38v1,173 HLTOGAannotvHg38v1,220 HLTOGAannotvHg38v1,242 augustusGene,101 chainBosTau7,32 chainBosTau7,97 chainBosTau7,118 chainBosTau7,150 chainBosTau7,157 chainBosTau7,172 chainBosTau7,191 chainBosTau7,194 chainBosTau7,234 chainBosTau7,255 chainBosTau7,302 chainBosTau7,336 chainBosTau7,366 chainBosTau7,378 chainBosTau7,387 chainBosTau7,405 chainBosTau7,410 chainBosTau7,419 chainBosTau7,431 chainBosTau7,445 chainBosTau7,487 chainBosTau7,504 chainBosTau7,535 chainBosTau7,553 chainBosTau7,567 chainBosTau7,603 chainBosTau7,700 chainBosTau7,788 chainBosTau7,829 chainBosTau7,837 chainBosTau7,853 chainBosTau7,886 chainBosTau7,898 chainBosTau7,1068 chainHg19,31 chainHg19,95 chainHg19,116 chainHg19,148 chainHg19,155 chainHg19,170 chainHg19,189 chainHg19,192 chainHg19,232 chainHg19,253 chainHg19,300 chainHg19,333 chainHg19,363 chainHg19,375 chainHg19,384 chainHg19,402 chainHg19,407 chainHg19,416 chainHg19,428 chainHg19,442 chainHg19,484 chainHg19,501 chainHg19,532 chainHg19,550 chainHg19,564 chainHg19,600 chainHg19,697 chainHg19,785 chainHg19,826 chainHg19,834 chainHg19,850 chainHg19,883 chainHg19,895 chainHg19,1065 chainMm10,31 chainMm10,95 chainMm10,116 chainMm10,148 chainMm10,155 chainMm10,170 chainMm10,189 chainMm10,192 chainMm10,232 chainMm10,253 chainMm10,300 chainMm10,333 chainMm10,363 chainMm10,375 chainMm10,384 chainMm10,402 chainMm10,407 chainMm10,416 chainMm10,428 chainMm10,442 chainMm10,484 chainMm10,501 chainMm10,532 chainMm10,550 chainMm10,564 chainMm10,600 chainMm10,697 chainMm10,785 chainMm10,826 chainMm10,834 chainMm10,850 chainMm10,883 chainMm10,895 chainMm10,1065 chainMonDom5,31 chainMonDom5,95 chainMonDom5,116 chainMonDom5,148 chainMonDom5,155 chainMonDom5,170 chainMonDom5,189 chainMonDom5,192 chainMonDom5,232 chainMonDom5,253 chainMonDom5,300 chainMonDom5,333 chainMonDom5,363 chainMonDom5,375 chainMonDom5,384 chainMonDom5,402 chainMonDom5,407 chainMonDom5,416 chainMonDom5,428 chainMonDom5,442 chainMonDom5,484 chainMonDom5,501 chainMonDom5,532 chainMonDom5,550 chainMonDom5,564 chainMonDom5,600 chainMonDom5,697 chainMonDom5,785 chainMonDom5,826 chainMonDom5,834 chainMonDom5,850 chainMonDom5,883 chainMonDom5,895 chainMonDom5,1065 chainNetBosTau7,35 chainNetBosTau7,100 chainNetBosTau7,121 chainNetBosTau7,153 chainNetBosTau7,160 chainNetBosTau7,175 chainNetBosTau7,194 chainNetBosTau7,197 chainNetBosTau7,237 chainNetBosTau7,258 chainNetBosTau7,305 chainNetBosTau7,339 chainNetBosTau7,369 chainNetBosTau7,381 chainNetBosTau7,390 chainNetBosTau7,408 chainNetBosTau7,413 chainNetBosTau7,422 chainNetBosTau7,434 chainNetBosTau7,448 chainNetBosTau7,490 chainNetBosTau7,507 chainNetBosTau7,538 chainNetBosTau7,556 chainNetBosTau7,570 chainNetBosTau7,606 chainNetBosTau7,703 chainNetBosTau7,791 chainNetBosTau7,832 chainNetBosTau7,840 chainNetBosTau7,856 chainNetBosTau7,889 chainNetBosTau7,901 chainNetBosTau7,1071 chainNetHg19,34 chainNetHg19,98 chainNetHg19,119 chainNetHg19,151 chainNetHg19,158 chainNetHg19,173 chainNetHg19,192 chainNetHg19,195 chainNetHg19,235 chainNetHg19,256 chainNetHg19,303 chainNetHg19,336 chainNetHg19,366 chainNetHg19,378 chainNetHg19,387 chainNetHg19,405 chainNetHg19,410 chainNetHg19,419 chainNetHg19,431 chainNetHg19,445 chainNetHg19,487 chainNetHg19,504 chainNetHg19,535 chainNetHg19,553 chainNetHg19,567 chainNetHg19,603 chainNetHg19,700 chainNetHg19,788 chainNetHg19,829 chainNetHg19,837 chainNetHg19,853 chainNetHg19,886 chainNetHg19,898 chainNetHg19,1068 chainNetMm10,34 chainNetMm10,98 chainNetMm10,119 chainNetMm10,151 chainNetMm10,158 chainNetMm10,173 chainNetMm10,192 chainNetMm10,195 chainNetMm10,235 chainNetMm10,256 chainNetMm10,303 chainNetMm10,336 chainNetMm10,366 chainNetMm10,378 chainNetMm10,387 chainNetMm10,405 chainNetMm10,410 chainNetMm10,419 chainNetMm10,431 chainNetMm10,445 chainNetMm10,487 chainNetMm10,504 chainNetMm10,535 chainNetMm10,553 chainNetMm10,567 chainNetMm10,603 chainNetMm10,700 chainNetMm10,788 chainNetMm10,829 chainNetMm10,837 chainNetMm10,853 chainNetMm10,886 chainNetMm10,898 chainNetMm10,1068 chainNetMonDom5,34 chainNetMonDom5,98 chainNetMonDom5,119 chainNetMonDom5,151 chainNetMonDom5,158 chainNetMonDom5,173 chainNetMonDom5,192 chainNetMonDom5,195 chainNetMonDom5,235 chainNetMonDom5,256 chainNetMonDom5,303 chainNetMonDom5,336 chainNetMonDom5,366 chainNetMonDom5,378 chainNetMonDom5,387 chainNetMonDom5,405 chainNetMonDom5,410 chainNetMonDom5,419 chainNetMonDom5,431 chainNetMonDom5,445 chainNetMonDom5,487 chainNetMonDom5,504 chainNetMonDom5,535 chainNetMonDom5,553 chainNetMonDom5,567 chainNetMonDom5,603 chainNetMonDom5,700 chainNetMonDom5,788 chainNetMonDom5,829 chainNetMonDom5,837 chainNetMonDom5,853 chainNetMonDom5,886 chainNetMonDom5,898 chainNetMonDom5,1068 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 gap,13 gap,26 gap,44 gap,74 gap,129 gc5BaseBw,5 gc5BaseBw,26 gc5BaseBw,43 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,15 gold,28 gold,67 gold,128 gold,139 gold,147 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,222 mrna,405 nestedRepeats,61 nestedRepeats,64 nestedRepeats,75 nestedRepeats,115 nestedRepeats,156 nestedRepeats,167 nestedRepeats,241 nestedRepeats,339 nestedRepeats,367 nestedRepeats,381 nestedRepeats,402 netBosTau7,32 netBosTau7,97 netBosTau7,118 netBosTau7,150 netBosTau7,157 netBosTau7,172 netBosTau7,191 netBosTau7,194 netBosTau7,234 netBosTau7,255 netBosTau7,302 netBosTau7,336 netBosTau7,366 netBosTau7,378 netBosTau7,387 netBosTau7,405 netBosTau7,410 netBosTau7,419 netBosTau7,431 netBosTau7,445 netBosTau7,487 netBosTau7,504 netBosTau7,535 netBosTau7,553 netBosTau7,567 netBosTau7,603 netBosTau7,700 netBosTau7,788 netBosTau7,829 netBosTau7,837 netBosTau7,853 netBosTau7,886 netBosTau7,898 netBosTau7,1068 netHg19,31 netHg19,95 netHg19,116 netHg19,148 netHg19,155 netHg19,170 netHg19,189 netHg19,192 netHg19,232 netHg19,253 netHg19,300 netHg19,333 netHg19,363 netHg19,375 netHg19,384 netHg19,402 netHg19,407 netHg19,416 netHg19,428 netHg19,442 netHg19,484 netHg19,501 netHg19,532 netHg19,550 netHg19,564 netHg19,600 netHg19,697 netHg19,785 netHg19,826 netHg19,834 netHg19,850 netHg19,883 netHg19,895 netHg19,1065 netMm10,31 netMm10,95 netMm10,116 netMm10,148 netMm10,155 netMm10,170 netMm10,189 netMm10,192 netMm10,232 netMm10,253 netMm10,300 netMm10,333 netMm10,363 netMm10,375 netMm10,384 netMm10,402 netMm10,407 netMm10,416 netMm10,428 netMm10,442 netMm10,484 netMm10,501 netMm10,532 netMm10,550 netMm10,564 netMm10,600 netMm10,697 netMm10,785 netMm10,826 netMm10,834 netMm10,850 netMm10,883 netMm10,895 netMm10,1065 netMonDom5,31 netMonDom5,95 netMonDom5,116 netMonDom5,148 netMonDom5,155 netMonDom5,170 netMonDom5,189 netMonDom5,192 netMonDom5,232 netMonDom5,253 netMonDom5,300 netMonDom5,333 netMonDom5,363 netMonDom5,375 netMonDom5,384 netMonDom5,402 netMonDom5,407 netMonDom5,416 netMonDom5,428 netMonDom5,442 netMonDom5,484 netMonDom5,501 netMonDom5,532 netMonDom5,550 netMonDom5,564 netMonDom5,600 netMonDom5,697 netMonDom5,785 netMonDom5,826 netMonDom5,834 netMonDom5,850 netMonDom5,883 netMonDom5,895 netMonDom5,1065 refSeqComposite,62 refSeqComposite,278 refSeqComposite,397 refSeqComposite,760 refSeqComposite,992 refSeqComposite,1039 refSeqComposite,1066 refSeqComposite,1143 refSeqComposite,1169 refSeqComposite,1184 refSeqComposite,1254 refSeqComposite,1301 refSeqComposite,1345 refSeqComposite,1360 refSeqComposite,1369 refSeqComposite,1379 refSeqComposite,1389 refSeqComposite,1448 refSeqComposite,1457 refSeqComposite,1472 refSeqComposite,1480 refSeqComposite,1540 refSeqComposite,1625 refSeqComposite,1662 refSeqComposite,1668 rmsk,45 rmsk,63 rmsk,97 rmsk,100 rmsk,128 rmsk,139 rmsk,209 rmsk,270 rmsk,317 rmsk,362 rmsk,390 rmsk,404 rmsk,425 transMapEnsemblV5,33 transMapEnsemblV5,82 transMapEnsemblV5,89 transMapEnsemblV5,161 transMapEnsemblV5,338 transMapEnsemblV5,362 transMapEnsemblV5,370 transMapEnsemblV5,405 transMapEnsemblV5,415 transMapEnsemblV5,449 transMapEnsemblV5,495 transMapEnsemblV5,545 transMapEnsemblV5,587 transMapEstV5,31 transMapEstV5,51 transMapEstV5,58 transMapEstV5,130 transMapEstV5,307 transMapEstV5,331 transMapEstV5,339 transMapEstV5,374 transMapEstV5,384 transMapEstV5,418 transMapEstV5,464 transMapEstV5,514 transMapEstV5,556 transMapRefSeqV5,31 transMapRefSeqV5,51 transMapRefSeqV5,58 transMapRefSeqV5,130 transMapRefSeqV5,307 transMapRefSeqV5,331 transMapRefSeqV5,339 transMapRefSeqV5,374 transMapRefSeqV5,384 transMapRefSeqV5,418 transMapRefSeqV5,464 transMapRefSeqV5,514 transMapRefSeqV5,556 transMapRnaV5,31 transMapRnaV5,51 transMapRnaV5,58 transMapRnaV5,130 transMapRnaV5,307 transMapRnaV5,331 transMapRnaV5,339 transMapRnaV5,374 transMapRnaV5,384 transMapRnaV5,418 transMapRnaV5,464 transMapRnaV5,514 transMapRnaV5,556 transMapV5,30 transMapV5,52 transMapV5,59 transMapV5,77 transMapV5,236 transMapV5,413 transMapV5,437 transMapV5,445 transMapV5,480 transMapV5,490 transMapV5,524 transMapV5,570 transMapV5,620 transMapV5,662 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 windowmaskerSdust,27 xenoRefGene,244 inactivating HLTOGAannotvHg38v1,185 HLTOGAannotvHg38v1,232 HLTOGAannotvHg38v1,240 HLTOGAannotvHg38v1,275 HLTOGAannotvHg38v1,305 include mrna,79 mrna,284 mrna,308 refSeqComposite,188 rmsk,159 rmsk,172 included augustusGene,160 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 windowmaskerSdust,26 includes refSeqComposite,217 refSeqComposite,263 refSeqComposite,347 refSeqComposite,652 rmsk,198 uniprot,1587 including refSeqComposite,799 rmsk,188 uniprot,1700 inclusion refSeqComposite,396 inconsistency refSeqComposite,877 incorporate refSeqComposite,664 incorrect uniprot,1361 indels microsat,74 independently refSeqComposite,294 indexing refSeqComposite,1467 indicate chainBosTau7,141 chainBosTau7,249 chainHg19,139 chainHg19,247 chainMm10,139 chainMm10,247 chainMonDom5,139 chainMonDom5,247 chainNetBosTau7,144 chainNetBosTau7,252 chainNetHg19,142 chainNetHg19,250 chainNetMm10,142 chainNetMm10,250 chainNetMonDom5,142 chainNetMonDom5,250 mrna,52 nestedRepeats,153 netBosTau7,141 netBosTau7,249 netHg19,139 netHg19,247 netMm10,139 netMm10,247 netMonDom5,139 netMonDom5,247 indicates refSeqComposite,609 xenoRefGene,60 individual chainBosTau7,246 chainBosTau7,502 chainHg19,244 chainHg19,499 chainMm10,244 chainMm10,499 chainMonDom5,244 chainMonDom5,499 chainNetBosTau7,249 chainNetBosTau7,505 chainNetHg19,247 chainNetHg19,502 chainNetMm10,247 chainNetMm10,502 chainNetMonDom5,247 chainNetMonDom5,502 netBosTau7,246 netBosTau7,502 netHg19,244 netHg19,499 netMm10,244 netMm10,499 netMonDom5,244 netMonDom5,499 refSeqComposite,680 refSeqComposite,705 refSeqComposite,749 refSeqComposite,1495 transMapEnsemblV5,603 transMapEstV5,572 transMapRefSeqV5,572 transMapRnaV5,572 transMapV5,678 infer HLTOGAannotvHg38v1,19 inference HLTOGAannotvHg38v1,361 inferring HLTOGAannotvHg38v1,32 information HLTOGAannotvHg38v1,300 augustusGene,36 chainBosTau7,465 chainBosTau7,478 chainBosTau7,484 chainBosTau7,854 chainHg19,462 chainHg19,475 chainHg19,481 chainHg19,851 chainMm10,462 chainMm10,475 chainMm10,481 chainMm10,851 chainMonDom5,462 chainMonDom5,475 chainMonDom5,481 chainMonDom5,851 chainNetBosTau7,468 chainNetBosTau7,481 chainNetBosTau7,487 chainNetBosTau7,857 chainNetHg19,465 chainNetHg19,478 chainNetHg19,484 chainNetHg19,854 chainNetMm10,465 chainNetMm10,478 chainNetMm10,484 chainNetMm10,854 chainNetMonDom5,465 chainNetMonDom5,478 chainNetMonDom5,484 chainNetMonDom5,854 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 gap,35 gc5BaseBw,55 genscan,51 genscan,126 gold,37 microsat,97 mrna,350 mrna,376 nestedRepeats,53 nestedRepeats,301 netBosTau7,465 netBosTau7,478 netBosTau7,484 netBosTau7,854 netHg19,462 netHg19,475 netHg19,481 netHg19,851 netMm10,462 netMm10,475 netMm10,481 netMm10,851 netMonDom5,462 netMonDom5,475 netMonDom5,481 netMonDom5,851 refSeqComposite,131 refSeqComposite,669 refSeqComposite,853 refSeqComposite,1188 refSeqComposite,1384 refSeqComposite,1388 rmsk,89 rmsk,324 simpleRepeat,58 transMapEnsemblV5,132 transMapEnsemblV5,149 transMapEnsemblV5,569 transMapEstV5,101 transMapEstV5,118 transMapEstV5,538 transMapRefSeqV5,101 transMapRefSeqV5,118 transMapRefSeqV5,538 transMapRnaV5,101 transMapRnaV5,118 transMapRnaV5,538 transMapV5,207 transMapV5,224 transMapV5,644 uniprot,678 uniprot,1842 uniprot,2038 xenoRefGene,177 initial refSeqComposite,683 initiate rmsk,316 initio augustusGene,4 augustusGene,17 input HLTOGAannotvHg38v1,43 uniprot,1952 windowmaskerSdust,61 windowmaskerSdust,70 insdc ucscToINSDC,1 ucscToINSDC,4 ucscToINSDC,32 inserted chainBosTau7,578 chainBosTau7,910 chainHg19,575 chainHg19,907 chainMm10,575 chainMm10,907 chainMonDom5,575 chainMonDom5,907 chainNetBosTau7,581 chainNetBosTau7,913 chainNetHg19,578 chainNetHg19,910 chainNetMm10,578 chainNetMm10,910 chainNetMonDom5,578 chainNetMonDom5,910 netBosTau7,578 netBosTau7,910 netHg19,575 netHg19,907 netMm10,575 netMm10,907 netMonDom5,575 netMonDom5,907 insertion chainBosTau7,156 chainHg19,154 chainMm10,154 chainMonDom5,154 chainNetBosTau7,159 chainNetHg19,157 chainNetMm10,157 chainNetMonDom5,157 mrna,381 netBosTau7,156 netHg19,154 netMm10,154 netMonDom5,154 rmsk,223 insertions nestedRepeats,86 nestedRepeats,92 refSeqComposite,949 inside uniprot,560 inspection uniprot,1653 instead refSeqComposite,786 xenoRefGene,120 institute nestedRepeats,55 rmsk,91 instructions transMapEnsemblV5,634 transMapEstV5,603 transMapRefSeqV5,603 transMapRnaV5,603 transMapV5,709 uniprot,1785 intact HLTOGAannotvHg38v1,38 HLTOGAannotvHg38v1,143 HLTOGAannotvHg38v1,166 integrates HLTOGAannotvHg38v1,29 integrating HLTOGAannotvHg38v1,356 integrator cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 refSeqComposite,1317 transMapEnsemblV5,537 transMapEstV5,506 transMapRefSeqV5,506 transMapRnaV5,506 transMapV5,612 uniprot,1725 interactions uniprot,316 interactively cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 refSeqComposite,1308 transMapEnsemblV5,529 transMapEstV5,498 transMapRefSeqV5,498 transMapRnaV5,498 transMapV5,604 uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 intergenic HLTOGAannotvHg38v1,84 genscan,47 international mrna,456 transMapEnsemblV5,695 transMapEstV5,664 transMapRefSeqV5,664 transMapRnaV5,664 transMapV5,770 ucscToINSDC,5 ucscToINSDC,27 internet nestedRepeats,279 interrupted nestedRepeats,1 nestedRepeats,5 nestedRepeats,21 nestedRepeats,90 nestedRepeats,121 interspersed nestedRepeats,36 nestedRepeats,373 nestedRepeats,400 rmsk,26 rmsk,154 rmsk,162 rmsk,396 rmsk,423 intervals windowmaskerSdust,4 into chainBosTau7,609 chainBosTau7,621 chainBosTau7,638 chainBosTau7,813 chainHg19,606 chainHg19,618 chainHg19,635 chainHg19,810 chainMm10,606 chainMm10,618 chainMm10,635 chainMm10,810 chainMonDom5,606 chainMonDom5,618 chainMonDom5,635 chainMonDom5,810 chainNetBosTau7,612 chainNetBosTau7,624 chainNetBosTau7,641 chainNetBosTau7,816 chainNetHg19,609 chainNetHg19,621 chainNetHg19,638 chainNetHg19,813 chainNetMm10,609 chainNetMm10,621 chainNetMm10,638 chainNetMm10,813 chainNetMonDom5,609 chainNetMonDom5,621 chainNetMonDom5,638 chainNetMonDom5,813 cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 mrna,201 netBosTau7,609 netBosTau7,621 netBosTau7,638 netBosTau7,813 netHg19,606 netHg19,618 netHg19,635 netHg19,810 netMm10,606 netMm10,618 netMm10,635 netMm10,810 netMonDom5,606 netMonDom5,618 netMonDom5,635 netMonDom5,810 uniprot,57 windowmaskerSdust,80 intron augustusGene,88 augustusGene,330 intronic HLTOGAannotvHg38v1,82 introns chainBosTau7,57 chainHg19,56 chainMm10,56 chainMonDom5,56 chainNetBosTau7,60 chainNetHg19,59 chainNetMm10,59 chainNetMonDom5,59 genscan,45 netBosTau7,57 netHg19,56 netMm10,56 netMonDom5,56 refSeqComposite,940 refSeqComposite,1031 inv chainBosTau7,540 chainHg19,537 chainMm10,537 chainMonDom5,537 chainNetBosTau7,543 chainNetHg19,540 chainNetMm10,540 chainNetMonDom5,540 netBosTau7,540 netHg19,537 netMm10,537 netMonDom5,537 inversions chainBosTau7,114 chainBosTau7,179 chainHg19,112 chainHg19,177 chainMm10,112 chainMm10,177 chainMonDom5,112 chainMonDom5,177 chainNetBosTau7,117 chainNetBosTau7,182 chainNetHg19,115 chainNetHg19,180 chainNetMm10,115 chainNetMm10,180 chainNetMonDom5,115 chainNetMonDom5,180 netBosTau7,114 netBosTau7,179 netHg19,112 netHg19,177 netMm10,112 netMm10,177 netMonDom5,112 netMonDom5,177 inverted chainBosTau7,872 chainHg19,869 chainMm10,869 chainMonDom5,869 chainNetBosTau7,875 chainNetHg19,872 chainNetMm10,872 chainNetMonDom5,872 netBosTau7,872 netHg19,869 netMm10,869 netMonDom5,869 invisible refSeqComposite,1038 refSeqComposite,1065 involve chainBosTau7,169 chainHg19,167 chainMm10,167 chainMonDom5,167 chainNetBosTau7,172 chainNetHg19,170 chainNetMm10,170 chainNetMonDom5,170 netBosTau7,169 netHg19,167 netMm10,167 netMonDom5,167 is HLTOGAannotvHg38v1,24 HLTOGAannotvHg38v1,104 HLTOGAannotvHg38v1,135 HLTOGAannotvHg38v1,151 HLTOGAannotvHg38v1,171 HLTOGAannotvHg38v1,197 HLTOGAannotvHg38v1,218 HLTOGAannotvHg38v1,238 HLTOGAannotvHg38v1,251 HLTOGAannotvHg38v1,281 HLTOGAannotvHg38v1,287 HLTOGAannotvHg38v1,328 chainBosTau7,285 chainBosTau7,305 chainBosTau7,485 chainHg19,283 chainHg19,303 chainHg19,482 chainMm10,283 chainMm10,303 chainMm10,482 chainMonDom5,283 chainMonDom5,303 chainMonDom5,482 chainNetBosTau7,288 chainNetBosTau7,308 chainNetBosTau7,488 chainNetHg19,286 chainNetHg19,306 chainNetHg19,485 chainNetMm10,286 chainNetMm10,306 chainNetMm10,485 chainNetMonDom5,286 chainNetMonDom5,306 chainNetMonDom5,485 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 gap,47 gap,92 gap,99 gap,107 gc5BaseBw,32 gold,46 gold,120 gold,126 microsat,88 mrna,241 mrna,257 mrna,293 mrna,310 nestedRepeats,59 nestedRepeats,123 nestedRepeats,198 nestedRepeats,219 nestedRepeats,337 netBosTau7,285 netBosTau7,305 netBosTau7,485 netHg19,283 netHg19,303 netHg19,482 netMm10,283 netMm10,303 netMm10,482 netMonDom5,283 netMonDom5,303 netMonDom5,482 refSeqComposite,147 refSeqComposite,243 refSeqComposite,317 refSeqComposite,537 refSeqComposite,567 refSeqComposite,578 refSeqComposite,714 refSeqComposite,1059 refSeqComposite,1202 refSeqComposite,1217 refSeqComposite,1434 refSeqComposite,1440 rmsk,95 rmsk,360 simpleRepeat,28 transMapEnsemblV5,39 transMapEnsemblV5,277 transMapEnsemblV5,421 transMapEnsemblV5,425 transMapEnsemblV5,437 transMapEnsemblV5,483 transMapEstV5,246 transMapEstV5,390 transMapEstV5,394 transMapEstV5,406 transMapEstV5,452 transMapRefSeqV5,246 transMapRefSeqV5,390 transMapRefSeqV5,394 transMapRefSeqV5,406 transMapRefSeqV5,452 transMapRnaV5,246 transMapRnaV5,390 transMapRnaV5,394 transMapRnaV5,406 transMapRnaV5,452 transMapV5,352 transMapV5,496 transMapV5,500 transMapV5,512 transMapV5,558 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 windowmaskerSdust,25 windowmaskerSdust,39 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 issue mrna,486 mrna,512 refSeqComposite,1786 refSeqComposite,1820 uniprot,2004 xenoRefGene,356 xenoRefGene,390 it chainBosTau7,92 chainBosTau7,284 chainBosTau7,539 chainBosTau7,551 chainHg19,90 chainHg19,282 chainHg19,536 chainHg19,548 chainMm10,90 chainMm10,282 chainMm10,536 chainMm10,548 chainMonDom5,90 chainMonDom5,282 chainMonDom5,536 chainMonDom5,548 chainNetBosTau7,95 chainNetBosTau7,287 chainNetBosTau7,542 chainNetBosTau7,554 chainNetHg19,93 chainNetHg19,285 chainNetHg19,539 chainNetHg19,551 chainNetMm10,93 chainNetMm10,285 chainNetMm10,539 chainNetMm10,551 chainNetMonDom5,93 chainNetMonDom5,285 chainNetMonDom5,539 chainNetMonDom5,551 gap,98 genscan,143 netBosTau7,92 netBosTau7,284 netBosTau7,539 netBosTau7,551 netHg19,90 netHg19,282 netHg19,536 netHg19,548 netMm10,90 netMm10,282 netMm10,536 netMm10,548 netMonDom5,90 netMonDom5,282 netMonDom5,536 netMonDom5,548 refSeqComposite,577 refSeqComposite,1304 uniprot,228 uniprot,625 uniprot,1586 item nestedRepeats,197 refSeqComposite,717 xenoRefGene,77 items chainBosTau7,503 chainHg19,500 chainMm10,500 chainMonDom5,500 chainNetBosTau7,506 chainNetHg19,503 chainNetMm10,503 chainNetMonDom5,503 mrna,46 mrna,84 mrna,94 mrna,288 nestedRepeats,171 nestedRepeats,180 netBosTau7,503 netHg19,500 netMm10,500 netMonDom5,500 refSeqComposite,767 refSeqComposite,966 refSeqComposite,1667 xenoRefGene,104 its cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 nestedRepeats,204 uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 genscan,220 mrna,475 mrna,499 nestedRepeats,341 refSeqComposite,1765 rmsk,364 transMapEnsemblV5,788 transMapEstV5,757 transMapRefSeqV5,757 transMapRnaV5,757 transMapV5,863 xenoRefGene,335 jan chainBosTau7,1114 chainHg19,1111 chainMm10,1111 chainMonDom5,1111 chainNetBosTau7,1117 chainNetHg19,1114 chainNetMm10,1114 chainNetMonDom5,1114 microsat,129 mrna,483 mrna,508 netBosTau7,1114 netHg19,1111 netMm10,1111 netMonDom5,1111 refSeqComposite,1783 refSeqComposite,1816 simpleRepeat,89 uniprot,2001 windowmaskerSdust,108 xenoRefGene,353 xenoRefGene,386 jebb HLTOGAannotvHg38v1,340 jim chainBosTau7,970 chainBosTau7,997 chainBosTau7,1015 chainHg19,967 chainHg19,994 chainHg19,1012 chainMm10,967 chainMm10,994 chainMm10,1012 chainMonDom5,967 chainMonDom5,994 chainMonDom5,1012 chainNetBosTau7,973 chainNetBosTau7,1000 chainNetBosTau7,1018 chainNetHg19,970 chainNetHg19,997 chainNetHg19,1015 chainNetMm10,970 chainNetMm10,997 chainNetMm10,1015 chainNetMonDom5,970 chainNetMonDom5,997 chainNetMonDom5,1015 netBosTau7,970 netBosTau7,997 netBosTau7,1015 netHg19,967 netHg19,994 netHg19,1012 netMm10,967 netMm10,994 netMm10,1012 netMonDom5,967 netMonDom5,994 netMonDom5,1012 joined chainBosTau7,126 chainHg19,124 chainMm10,124 chainMonDom5,124 chainNetBosTau7,129 chainNetHg19,127 chainNetMm10,127 chainNetMonDom5,127 nestedRepeats,7 nestedRepeats,18 nestedRepeats,103 nestedRepeats,128 netBosTau7,126 netHg19,124 netMm10,124 netMonDom5,124 journal nestedRepeats,349 rmsk,372 json refSeqComposite,1361 refSeqComposite,1365 jul cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 jurka nestedRepeats,62 nestedRepeats,340 rmsk,98 rmsk,363 jz transMapEnsemblV5,790 transMapEstV5,759 transMapRefSeqV5,759 transMapRnaV5,759 transMapV5,865 k augustusGene,268 mrna,469 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 karlin genscan,148 genscan,209 karsch-mizrachi mrna,470 mrna,494 kasif genscan,193 kd refSeqComposite,1751 refSeqComposite,1793 xenoRefGene,321 xenoRefGene,363 kd-tree chainBosTau7,644 chainHg19,641 chainMm10,641 chainMonDom5,641 chainNetBosTau7,647 chainNetHg19,644 chainNetMm10,644 chainNetMonDom5,644 netBosTau7,644 netHg19,641 netMm10,641 netMonDom5,641 kd-trees chainBosTau7,662 chainHg19,659 chainMm10,659 chainMonDom5,659 chainNetBosTau7,665 chainNetHg19,662 chainNetMm10,662 chainNetMonDom5,662 netBosTau7,662 netHg19,659 netMm10,659 netMonDom5,659 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 uniprot,1486 kent chainBosTau7,971 chainBosTau7,998 chainBosTau7,1016 chainBosTau7,1051 chainBosTau7,1093 chainHg19,968 chainHg19,995 chainHg19,1013 chainHg19,1048 chainHg19,1090 chainMm10,968 chainMm10,995 chainMm10,1013 chainMm10,1048 chainMm10,1090 chainMonDom5,968 chainMonDom5,995 chainMonDom5,1013 chainMonDom5,1048 chainMonDom5,1090 chainNetBosTau7,974 chainNetBosTau7,1001 chainNetBosTau7,1019 chainNetBosTau7,1054 chainNetBosTau7,1096 chainNetHg19,971 chainNetHg19,998 chainNetHg19,1016 chainNetHg19,1051 chainNetHg19,1093 chainNetMm10,971 chainNetMm10,998 chainNetMm10,1016 chainNetMm10,1051 chainNetMm10,1093 chainNetMonDom5,971 chainNetMonDom5,998 chainNetMonDom5,1016 chainNetMonDom5,1051 chainNetMonDom5,1093 mrna,518 netBosTau7,971 netBosTau7,998 netBosTau7,1016 netBosTau7,1051 netBosTau7,1093 netHg19,968 netHg19,995 netHg19,1013 netHg19,1048 netHg19,1090 netMm10,968 netMm10,995 netMm10,1013 netMm10,1048 netMm10,1090 netMonDom5,968 netMonDom5,995 netMonDom5,1013 netMonDom5,1048 netMonDom5,1090 refSeqComposite,1732 xenoRefGene,303 kept mrna,440 refSeqComposite,1289 xenoRefGene,279 kirilenko HLTOGAannotvHg38v1,334 km refSeqComposite,1769 xenoRefGene,339 known chainBosTau7,921 chainHg19,918 chainMm10,918 chainMonDom5,918 chainNetBosTau7,924 chainNetHg19,921 chainNetMm10,921 chainNetMonDom5,921 gold,122 netBosTau7,921 netHg19,918 netMm10,918 netMonDom5,918 refSeqComposite,505 xenoRefGene,15 kontopoulos HLTOGAannotvHg38v1,350 l HLTOGAannotvHg38v1,353 cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 transMapEnsemblV5,722 transMapEstV5,691 transMapRefSeqV5,691 transMapRnaV5,691 transMapV5,797 lab HLTOGAannotvHg38v1,323 augustusGene,252 label genscan,98 refSeqComposite,764 refSeqComposite,776 refSeqComposite,812 xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled nestedRepeats,132 refSeqComposite,769 uniprot,457 xenoRefGene,106 labels nestedRepeats,161 refSeqComposite,718 refSeqComposite,798 xenoRefGene,78 landrum refSeqComposite,1766 xenoRefGene,336 langton transMapEnsemblV5,721 transMapEstV5,690 transMapRefSeqV5,690 transMapRnaV5,690 transMapV5,796 largely chainBosTau7,145 chainHg19,143 chainMm10,143 chainMonDom5,143 chainNetBosTau7,148 chainNetHg19,146 chainNetMm10,146 chainNetMonDom5,146 netBosTau7,145 netHg19,143 netMm10,143 netMonDom5,143 largest chainBosTau7,398 chainHg19,395 chainMm10,395 chainMonDom5,395 chainNetBosTau7,401 chainNetHg19,398 chainNetMm10,398 chainNetMonDom5,398 netBosTau7,398 netHg19,395 netMm10,395 netMonDom5,395 lastz chainBosTau7,596 chainBosTau7,770 chainBosTau7,919 chainHg19,593 chainHg19,767 chainHg19,916 chainMm10,593 chainMm10,767 chainMm10,916 chainMonDom5,593 chainMonDom5,767 chainMonDom5,916 chainNetBosTau7,599 chainNetBosTau7,773 chainNetBosTau7,922 chainNetHg19,596 chainNetHg19,770 chainNetHg19,919 chainNetMm10,596 chainNetMm10,770 chainNetMm10,919 chainNetMonDom5,596 chainNetMonDom5,770 chainNetMonDom5,919 netBosTau7,596 netBosTau7,770 netBosTau7,919 netHg19,593 netHg19,767 netHg19,916 netMm10,593 netMm10,767 netMm10,916 netMonDom5,593 netMonDom5,767 netMonDom5,916 transMapV5,46 lau transMapEnsemblV5,733 transMapEstV5,702 transMapRefSeqV5,702 transMapRnaV5,702 transMapV5,808 lavtoaxt chainBosTau7,614 chainHg19,611 chainMm10,611 chainMonDom5,611 chainNetBosTau7,617 chainNetHg19,614 chainNetMm10,614 chainNetMonDom5,614 netBosTau7,614 netHg19,611 netMm10,611 netMonDom5,611 learning HLTOGAannotvHg38v1,89 least microsat,29 microsat,78 mrna,431 refSeqComposite,1280 xenoRefGene,270 lee uniprot,1955 left refSeqComposite,972 length augustusGene,82 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 genscan,39 less refSeqComposite,1244 transMapEnsemblV5,375 transMapEstV5,344 transMapRefSeqV5,344 transMapRnaV5,344 transMapV5,450 uniprot,680 xenoRefGene,234 level chainBosTau7,393 chainBosTau7,427 chainBosTau7,432 chainBosTau7,439 chainBosTau7,497 chainBosTau7,524 chainBosTau7,537 chainBosTau7,569 chainHg19,390 chainHg19,424 chainHg19,429 chainHg19,436 chainHg19,494 chainHg19,521 chainHg19,534 chainHg19,566 chainMm10,390 chainMm10,424 chainMm10,429 chainMm10,436 chainMm10,494 chainMm10,521 chainMm10,534 chainMm10,566 chainMonDom5,390 chainMonDom5,424 chainMonDom5,429 chainMonDom5,436 chainMonDom5,494 chainMonDom5,521 chainMonDom5,534 chainMonDom5,566 chainNetBosTau7,396 chainNetBosTau7,430 chainNetBosTau7,435 chainNetBosTau7,442 chainNetBosTau7,500 chainNetBosTau7,527 chainNetBosTau7,540 chainNetBosTau7,572 chainNetHg19,393 chainNetHg19,427 chainNetHg19,432 chainNetHg19,439 chainNetHg19,497 chainNetHg19,524 chainNetHg19,537 chainNetHg19,569 chainNetMm10,393 chainNetMm10,427 chainNetMm10,432 chainNetMm10,439 chainNetMm10,497 chainNetMm10,524 chainNetMm10,537 chainNetMm10,569 chainNetMonDom5,393 chainNetMonDom5,427 chainNetMonDom5,432 chainNetMonDom5,439 chainNetMonDom5,497 chainNetMonDom5,524 chainNetMonDom5,537 chainNetMonDom5,569 mrna,423 netBosTau7,393 netBosTau7,427 netBosTau7,432 netBosTau7,439 netBosTau7,497 netBosTau7,524 netBosTau7,537 netBosTau7,569 netHg19,390 netHg19,424 netHg19,429 netHg19,436 netHg19,494 netHg19,521 netHg19,534 netHg19,566 netMm10,390 netMm10,424 netMm10,429 netMm10,436 netMm10,494 netMm10,521 netMm10,534 netMm10,566 netMonDom5,390 netMonDom5,424 netMonDom5,429 netMonDom5,436 netMonDom5,494 netMonDom5,521 netMonDom5,534 netMonDom5,566 refSeqComposite,611 refSeqComposite,631 refSeqComposite,1272 rmsk,205 xenoRefGene,62 xenoRefGene,262 levels cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 libraries nestedRepeats,258 nestedRepeats,317 rmsk,340 library nestedRepeats,47 rmsk,83 lifted uniprot,1492 lifting uniprot,1843 liftover uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 refSeqComposite,620 unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,71 light-blue uniprot,178 lighter rmsk,237 like chainBosTau7,48 chainBosTau7,56 chainHg19,47 chainHg19,55 chainMm10,47 chainMm10,55 chainMonDom5,47 chainMonDom5,55 chainNetBosTau7,51 chainNetBosTau7,59 chainNetHg19,50 chainNetHg19,58 chainNetMm10,50 chainNetMm10,58 chainNetMonDom5,50 chainNetMonDom5,58 netBosTau7,48 netBosTau7,56 netHg19,47 netHg19,55 netMm10,47 netMm10,55 netMonDom5,47 netMonDom5,55 refSeqComposite,83 refSeqComposite,1615 uniprot,1541 likely HLTOGAannotvHg38v1,160 augustusGene,111 microsat,17 refSeqComposite,948 transMapV5,94 line chainBosTau7,475 chainHg19,472 chainMm10,472 chainMonDom5,472 chainNetBosTau7,478 chainNetHg19,475 chainNetMm10,475 chainNetMonDom5,475 gap,106 gold,125 nestedRepeats,151 netBosTau7,475 netHg19,472 netMm10,472 netMonDom5,472 refSeqComposite,1003 refSeqComposite,1014 refSeqComposite,1614 rmsk,165 uniprot,1872 uniprot,1876 line-up chainBosTau7,542 chainHg19,539 chainMm10,539 chainMonDom5,539 chainNetBosTau7,545 chainNetHg19,542 chainNetMm10,542 chainNetMonDom5,542 netBosTau7,542 netHg19,539 netMm10,539 netMonDom5,539 line-ups chainBosTau7,527 chainHg19,524 chainMm10,524 chainMonDom5,524 chainNetBosTau7,530 chainNetHg19,527 chainNetMm10,527 chainNetMonDom5,527 netBosTau7,527 netHg19,524 netMm10,524 netMonDom5,524 lineage transMapEnsemblV5,810 transMapEstV5,779 transMapRefSeqV5,779 transMapRnaV5,779 transMapV5,885 lineage-specific chainBosTau7,945 chainHg19,942 chainMm10,942 chainMonDom5,942 chainNetBosTau7,948 chainNetHg19,945 chainNetMm10,945 chainNetMonDom5,945 netBosTau7,945 netHg19,942 netMm10,942 netMonDom5,942 linear chainBosTau7,704 chainHg19,701 chainMm10,701 chainMonDom5,701 chainNetBosTau7,707 chainNetHg19,704 chainNetMm10,704 chainNetMonDom5,704 netBosTau7,704 netHg19,701 netMm10,701 netMonDom5,701 lineargap chainBosTau7,710 chainHg19,707 chainMm10,707 chainMonDom5,707 chainNetBosTau7,713 chainNetHg19,710 chainNetMm10,710 chainNetMonDom5,710 netBosTau7,710 netHg19,707 netMm10,707 netMonDom5,707 lines chainBosTau7,133 chainBosTau7,140 chainBosTau7,163 chainBosTau7,455 chainHg19,131 chainHg19,138 chainHg19,161 chainHg19,452 chainMm10,131 chainMm10,138 chainMm10,161 chainMm10,452 chainMonDom5,131 chainMonDom5,138 chainMonDom5,161 chainMonDom5,452 chainNetBosTau7,136 chainNetBosTau7,143 chainNetBosTau7,166 chainNetBosTau7,458 chainNetHg19,134 chainNetHg19,141 chainNetHg19,164 chainNetHg19,455 chainNetMm10,134 chainNetMm10,141 chainNetMm10,164 chainNetMm10,455 chainNetMonDom5,134 chainNetMonDom5,141 chainNetMonDom5,164 chainNetMonDom5,455 nestedRepeats,131 netBosTau7,133 netBosTau7,140 netBosTau7,163 netBosTau7,455 netHg19,131 netHg19,138 netHg19,161 netHg19,452 netMm10,131 netMm10,138 netMm10,161 netMm10,452 netMonDom5,131 netMonDom5,138 netMonDom5,161 netMonDom5,452 refSeqComposite,998 link gc5BaseBw,63 uniprot,491 uniprot,1675 linked refSeqComposite,1532 refSeqComposite,1647 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 uniprot,1919 lipid uniprot,346 lipman mrna,472 mrna,496 lipoification uniprot,577 list mrna,158 refSeqComposite,763 refSeqComposite,1691 uniprot,979 uniprot,1165 uniprot,1831 literature refSeqComposite,283 refSeqComposite,659 uniprot,434 lm uniprot,2019 loaded windowmaskerSdust,79 local chainBosTau7,113 chainBosTau7,185 chainHg19,111 chainHg19,183 chainMm10,111 chainMm10,183 chainMonDom5,111 chainMonDom5,183 chainNetBosTau7,116 chainNetBosTau7,188 chainNetHg19,114 chainNetHg19,186 chainNetMm10,114 chainNetMm10,186 chainNetMonDom5,114 chainNetMonDom5,186 nestedRepeats,98 netBosTau7,113 netBosTau7,185 netHg19,111 netHg19,183 netMm10,111 netMm10,183 netMonDom5,111 netMonDom5,183 refSeqComposite,1337 located simpleRepeat,21 location chainBosTau7,254 chainHg19,252 chainMm10,252 chainMonDom5,252 chainNetBosTau7,257 chainNetHg19,255 chainNetMm10,255 chainNetMonDom5,255 netBosTau7,254 netHg19,252 netMm10,252 netMonDom5,252 transMapEnsemblV5,404 transMapEnsemblV5,414 transMapEnsemblV5,481 transMapEstV5,373 transMapEstV5,383 transMapEstV5,450 transMapRefSeqV5,373 transMapRefSeqV5,383 transMapRefSeqV5,450 transMapRnaV5,373 transMapRnaV5,383 transMapRnaV5,450 transMapV5,479 transMapV5,489 transMapV5,556 uniprot,554 uniprot,767 uniprot,1417 locations gap,3 transMapEnsemblV5,493 transMapEstV5,462 transMapRefSeqV5,462 transMapRnaV5,462 transMapV5,568 uniprot,451 locus HLTOGAannotvHg38v1,123 logic mrna,236 long refSeqComposite,1027 rmsk,161 rmsk,166 long-established transMapEnsemblV5,805 transMapEstV5,774 transMapRefSeqV5,774 transMapRnaV5,774 transMapV5,880 longer chainBosTau7,84 chainHg19,82 chainMm10,82 chainMonDom5,82 chainNetBosTau7,87 chainNetHg19,85 chainNetMm10,85 chainNetMonDom5,85 netBosTau7,84 netHg19,82 netMm10,82 netMonDom5,82 longest chainBosTau7,520 chainHg19,517 chainMm10,517 chainMonDom5,517 chainNetBosTau7,523 chainNetHg19,520 chainNetMm10,520 chainNetMonDom5,520 netBosTau7,520 netHg19,517 netMm10,517 netMonDom5,517 look chainBosTau7,47 chainHg19,46 chainMm10,46 chainMonDom5,46 chainNetBosTau7,50 chainNetHg19,49 chainNetMm10,49 chainNetMonDom5,49 netBosTau7,47 netHg19,46 netMm10,46 netMonDom5,46 loose chainMonDom5,708 chainNetMonDom5,711 netMonDom5,708 loss HLTOGAannotvHg38v1,236 losses transMapEnsemblV5,803 transMapEstV5,772 transMapRefSeqV5,772 transMapRnaV5,772 transMapV5,878 lost HLTOGAannotvHg38v1,40 HLTOGAannotvHg38v1,260 HLTOGAannotvHg38v1,272 lot uniprot,1950 low nestedRepeats,39 rmsk,29 rmsk,181 lowe transMapEnsemblV5,793 transMapEstV5,762 transMapRefSeqV5,762 transMapRnaV5,762 transMapV5,868 lower chainBosTau7,496 chainHg19,493 chainMm10,493 chainMonDom5,493 chainNetBosTau7,499 chainNetHg19,496 chainNetMm10,496 chainNetMonDom5,496 netBosTau7,496 netHg19,493 netMm10,493 netMonDom5,493 lower-level chainBosTau7,861 chainBosTau7,867 chainHg19,858 chainHg19,864 chainMm10,858 chainMm10,864 chainMonDom5,858 chainMonDom5,864 chainNetBosTau7,864 chainNetBosTau7,870 chainNetHg19,861 chainNetHg19,867 chainNetMm10,861 chainNetMm10,867 chainNetMonDom5,861 chainNetMonDom5,867 netBosTau7,861 netBosTau7,867 netHg19,858 netHg19,864 netMm10,858 netMm10,864 netMonDom5,858 netMonDom5,864 ls-snp uniprot,1536 lt HLTOGAannotvHg38v1,213 refSeqComposite,944 ltr rmsk,170 m HLTOGAannotvHg38v1,345 augustusGene,287 augustusGene,289 augustusGene,317 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 mrna,467 transMapEnsemblV5,717 transMapEnsemblV5,724 transMapEnsemblV5,758 transMapEnsemblV5,760 transMapEnsemblV5,792 transMapEstV5,686 transMapEstV5,693 transMapEstV5,727 transMapEstV5,729 transMapEstV5,761 transMapRefSeqV5,686 transMapRefSeqV5,693 transMapRefSeqV5,727 transMapRefSeqV5,729 transMapRefSeqV5,761 transMapRnaV5,686 transMapRnaV5,693 transMapRnaV5,727 transMapRnaV5,729 transMapRnaV5,761 transMapV5,792 transMapV5,799 transMapV5,833 transMapV5,835 transMapV5,867 machine HLTOGAannotvHg38v1,88 made rmsk,110 transMapEnsemblV5,396 transMapEstV5,365 transMapRefSeqV5,365 transMapRnaV5,365 transMapV5,471 uniprot,931 uniprot,938 maglott refSeqComposite,1796 xenoRefGene,366 mailing refSeqComposite,1690 uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained uniprot,719 make gold,76 refSeqComposite,116 refSeqComposite,1099 rmsk,123 transMapEnsemblV5,430 transMapEstV5,399 transMapRefSeqV5,399 transMapRnaV5,399 transMapV5,505 uniprot,1406 makedb rmsk,131 making uniprot,1978 mammalian nestedRepeats,368 nestedRepeats,382 refSeqComposite,1776 rmsk,391 rmsk,405 xenoRefGene,346 mammals HLTOGAannotvHg38v1,56 manner refSeqComposite,1627 uniprot,1469 manual refSeqComposite,258 uniprot,1652 manually refSeqComposite,250 refSeqComposite,421 many chainBosTau7,406 chainHg19,403 chainMm10,403 chainMonDom5,403 chainNetBosTau7,409 chainNetHg19,406 chainNetMm10,406 chainNetMonDom5,406 mrna,93 netBosTau7,406 netHg19,403 netMm10,403 netMonDom5,403 uniprot,932 uniprot,1124 map chainBosTau7,334 chainHg19,331 chainMm10,331 chainMonDom5,331 chainNetBosTau7,337 chainNetHg19,334 chainNetMm10,334 chainNetMonDom5,334 netBosTau7,334 netHg19,331 netMm10,331 netMonDom5,331 transMapEnsemblV5,294 transMapEstV5,263 transMapRefSeqV5,263 transMapRnaV5,263 transMapV5,369 uniprot,758 uniprot,1885 mapped augustusGene,298 nestedRepeats,233 refSeqComposite,1108 transMapEnsemblV5,381 transMapEnsemblV5,413 transMapEnsemblV5,471 transMapEnsemblV5,769 transMapEstV5,350 transMapEstV5,382 transMapEstV5,440 transMapEstV5,738 transMapRefSeqV5,350 transMapRefSeqV5,382 transMapRefSeqV5,440 transMapRefSeqV5,738 transMapRnaV5,350 transMapRnaV5,382 transMapRnaV5,440 transMapRnaV5,738 transMapV5,131 transMapV5,456 transMapV5,488 transMapV5,546 transMapV5,844 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping cytoBandIdeo,7 gap,4 gc5BaseBw,8 gold,5 refSeqComposite,320 transMapEnsemblV5,267 transMapEnsemblV5,287 transMapEnsemblV5,300 transMapEstV5,236 transMapEstV5,256 transMapEstV5,269 transMapRefSeqV5,236 transMapRefSeqV5,256 transMapRefSeqV5,269 transMapRnaV5,236 transMapRnaV5,256 transMapRnaV5,269 transMapV5,342 transMapV5,362 transMapV5,375 ucscToINSDC,10 ucscToRefSeq,5 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings transMapEnsemblV5,7 transMapEnsemblV5,503 transMapEstV5,5 transMapEstV5,472 transMapRefSeqV5,6 transMapRefSeqV5,472 transMapRnaV5,6 transMapRnaV5,472 transMapV5,578 uniprot,1362 maps transMapEnsemblV5,477 transMapEnsemblV5,490 transMapEstV5,446 transMapEstV5,459 transMapRefSeqV5,446 transMapRefSeqV5,459 transMapRnaV5,446 transMapRnaV5,459 transMapV5,72 transMapV5,552 transMapV5,565 mar augustusGene,309 transMapEnsemblV5,780 transMapEstV5,749 transMapRefSeqV5,749 transMapRnaV5,749 transMapV5,855 mario augustusGene,102 augustusGene,283 mark transMapEnsemblV5,682 transMapEstV5,651 transMapRefSeqV5,651 transMapRnaV5,651 transMapV5,757 uniprot,1539 uniprot,1956 marked refSeqComposite,525 markers microsat,23 markov augustusGene,325 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 rmsk,71 windowmaskerSdust,5 windowmaskerSdust,16 masker windowmaskerSdust,102 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 match chainBosTau7,259 chainBosTau7,521 chainBosTau7,559 chainHg19,257 chainHg19,518 chainHg19,556 chainMm10,257 chainMm10,518 chainMm10,556 chainMonDom5,257 chainMonDom5,518 chainMonDom5,556 chainNetBosTau7,262 chainNetBosTau7,524 chainNetBosTau7,562 chainNetHg19,260 chainNetHg19,521 chainNetHg19,559 chainNetMm10,260 chainNetMm10,521 chainNetMm10,559 chainNetMonDom5,260 chainNetMonDom5,521 chainNetMonDom5,559 mrna,246 mrna,261 mrna,302 mrna,320 netBosTau7,259 netBosTau7,521 netBosTau7,559 netHg19,257 netHg19,518 netHg19,556 netMm10,257 netMm10,518 netMm10,556 netMonDom5,257 netMonDom5,518 netMonDom5,556 refSeqComposite,912 refSeqComposite,926 uniprot,1305 uniprot,1341 matches mrna,53 matching chainBosTau7,262 chainHg19,260 chainMm10,260 chainMonDom5,260 chainNetBosTau7,265 chainNetHg19,263 chainNetMm10,263 chainNetMonDom5,263 netBosTau7,262 netHg19,260 netMm10,260 netMonDom5,260 uniprot,1068 uniprot,1075 matrix chainBosTau7,674 chainBosTau7,706 chainHg19,671 chainHg19,703 chainMm10,671 chainMm10,703 chainMonDom5,671 chainMonDom5,703 chainNetBosTau7,677 chainNetBosTau7,709 chainNetHg19,674 chainNetHg19,706 chainNetMm10,674 chainNetMm10,706 chainNetMonDom5,674 chainNetMonDom5,706 netBosTau7,674 netBosTau7,706 netHg19,671 netHg19,703 netMm10,671 netMm10,703 netMonDom5,671 netMonDom5,703 mature unipChain,3 uniprot,251 uniprot,292 maximally chainBosTau7,666 chainHg19,663 chainMm10,663 chainMonDom5,663 chainNetBosTau7,669 chainNetHg19,666 chainNetMm10,666 chainNetMonDom5,666 cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 netBosTau7,666 netHg19,663 netMm10,663 netMonDom5,663 maximilian uniprot,1944 maxtracks augustusGene,139 may HLTOGAannotvHg38v1,189 HLTOGAannotvHg38v1,263 HLTOGAannotvHg38v1,265 chainBosTau7,176 chainBosTau7,435 chainHg19,174 chainHg19,432 chainMm10,174 chainMm10,432 chainMonDom5,174 chainMonDom5,432 chainNetBosTau7,179 chainNetBosTau7,438 chainNetHg19,177 chainNetHg19,435 chainNetMm10,177 chainNetMm10,435 chainNetMonDom5,177 chainNetMonDom5,435 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 gap,15 gc5BaseBw,40 gold,17 mrna,89 mrna,208 mrna,218 mrna,326 mrna,370 nestedRepeats,268 nestedRepeats,290 netBosTau7,176 netBosTau7,435 netHg19,174 netHg19,432 netMm10,174 netMm10,432 netMonDom5,174 netMonDom5,432 refSeqComposite,60 refSeqComposite,663 rmsk,297 rmsk,307 simpleRepeat,43 transMapEnsemblV5,108 transMapEnsemblV5,143 transMapEstV5,77 transMapEstV5,112 transMapRefSeqV5,77 transMapRefSeqV5,112 transMapRnaV5,77 transMapRnaV5,112 transMapV5,183 transMapV5,218 uniprot,2046 mcgarvey refSeqComposite,1768 xenoRefGene,338 md5 uniprot,1601 mediating uniprot,314 medium chainBosTau7,711 chainHg19,708 chainMm10,708 chainNetBosTau7,714 chainNetHg19,711 chainNetMm10,711 netBosTau7,711 netHg19,708 netMm10,708 refSeqComposite,622 xenoRefGene,73 mellifera augustusGene,216 mementos nestedRepeats,377 rmsk,400 menu refSeqComposite,850 xenoRefGene,174 method HLTOGAannotvHg38v1,27 uniprot,726 uniprot,753 uniprot,776 methods HLTOGAannotvHg38v1,41 augustusGene,46 chainBosTau7,571 chainBosTau7,774 chainHg19,568 chainHg19,771 chainMm10,568 chainMm10,771 chainMonDom5,568 chainMonDom5,771 chainNetBosTau7,574 chainNetBosTau7,777 chainNetHg19,571 chainNetHg19,774 chainNetMm10,571 chainNetMm10,774 chainNetMonDom5,571 chainNetMonDom5,774 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 genscan,130 genscan,197 microsat,45 mrna,386 nestedRepeats,244 netBosTau7,571 netBosTau7,774 netHg19,568 netHg19,771 netMm10,568 netMm10,771 netMonDom5,568 netMonDom5,771 refSeqComposite,91 refSeqComposite,1140 refSeqComposite,1222 rmsk,286 simpleRepeat,55 transMapEnsemblV5,152 transMapEstV5,121 transMapRefSeqV5,121 transMapRnaV5,121 transMapV5,227 uniprot,777 windowmaskerSdust,46 xenoRefGene,217 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 michael HLTOGAannotvHg38v1,321 micro-satellites rmsk,180 microsatellite microsat,1 microsat,22 microsatellites microsat,2 middle HLTOGAannotvHg38v1,144 HLTOGAannotvHg38v1,178 HLTOGAannotvHg38v1,225 HLTOGAannotvHg38v1,244 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 miller chainBosTau7,939 chainBosTau7,976 chainBosTau7,1037 chainBosTau7,1057 chainBosTau7,1105 chainHg19,936 chainHg19,973 chainHg19,1034 chainHg19,1054 chainHg19,1102 chainMm10,936 chainMm10,973 chainMm10,1034 chainMm10,1054 chainMm10,1102 chainMonDom5,936 chainMonDom5,973 chainMonDom5,1034 chainMonDom5,1054 chainMonDom5,1102 chainNetBosTau7,942 chainNetBosTau7,979 chainNetBosTau7,1040 chainNetBosTau7,1060 chainNetBosTau7,1108 chainNetHg19,939 chainNetHg19,976 chainNetHg19,1037 chainNetHg19,1057 chainNetHg19,1105 chainNetMm10,939 chainNetMm10,976 chainNetMm10,1037 chainNetMm10,1057 chainNetMm10,1105 chainNetMonDom5,939 chainNetMonDom5,976 chainNetMonDom5,1037 chainNetMonDom5,1057 chainNetMonDom5,1105 netBosTau7,939 netBosTau7,976 netBosTau7,1037 netBosTau7,1057 netBosTau7,1105 netHg19,936 netHg19,973 netHg19,1034 netHg19,1054 netHg19,1102 netMm10,936 netMm10,973 netMm10,1034 netMm10,1054 netMm10,1102 netMonDom5,936 netMonDom5,973 netMonDom5,1034 netMonDom5,1054 netMonDom5,1102 minexonintronprob augustusGene,135 minimum chainBosTau7,687 chainHg19,684 chainMm10,684 chainMonDom5,684 chainNetBosTau7,690 chainNetHg19,687 chainNetMm10,687 chainNetMonDom5,687 netBosTau7,687 netHg19,684 netMm10,684 netMonDom5,684 minmeanexonintronprob augustusGene,137 minmei chainBosTau7,931 chainHg19,928 chainMm10,928 chainMonDom5,928 chainNetBosTau7,934 chainNetHg19,931 chainNetMm10,931 chainNetMonDom5,931 netBosTau7,931 netHg19,928 netMm10,928 netMonDom5,928 mismatch refSeqComposite,896 rmsk,218 mismatching refSeqComposite,900 misplacements uniprot,853 missing HLTOGAannotvHg38v1,205 HLTOGAannotvHg38v1,212 mitochondrion refSeqComposite,241 mj refSeqComposite,1767 xenoRefGene,337 mk_counts windowmaskerSdust,59 mm10 chainMm10,7 chainMm10,69 chainMm10,309 chainNetMm10,8 chainNetMm10,72 chainNetMm10,312 chainNetMm10Viewchain,6 chainNetMm10Viewnet,6 netMm10,7 netMm10,69 netMm10,309 mode chainBosTau7,390 chainHg19,387 chainMm10,387 chainMonDom5,387 chainNetBosTau7,393 chainNetHg19,390 chainNetMm10,390 chainNetMonDom5,390 gold,69 mrna,44 mrna,74 nestedRepeats,119 nestedRepeats,160 nestedRepeats,169 netBosTau7,390 netHg19,387 netMm10,387 netMonDom5,387 rmsk,142 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 uniprot,733 modes chainBosTau7,244 chainHg19,242 chainMm10,242 chainMonDom5,242 chainNetBosTau7,247 chainNetHg19,245 chainNetMm10,245 chainNetMonDom5,245 netBosTau7,244 netHg19,242 netMm10,242 netMonDom5,242 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified rmsk,57 uniprot,343 modsnp uniprot,2030 moiety-binding uniprot,347 mol cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 genscan,221 molecular genscan,199 mondom5 chainMonDom5,7 chainMonDom5,69 chainMonDom5,309 chainNetMonDom5,8 chainNetMonDom5,72 chainNetMonDom5,312 chainNetMonDom5Viewchain,6 chainNetMonDom5Viewnet,6 netMonDom5,7 netMonDom5,69 netMonDom5,309 months uniprot,1573 morales HLTOGAannotvHg38v1,346 more augustusGene,35 chainBosTau7,165 chainBosTau7,226 chainHg19,163 chainHg19,224 chainMm10,163 chainMm10,224 chainMonDom5,163 chainMonDom5,224 chainNetBosTau7,168 chainNetBosTau7,229 chainNetHg19,166 chainNetHg19,227 chainNetMm10,166 chainNetMm10,227 chainNetMonDom5,166 chainNetMonDom5,227 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 genscan,50 genscan,125 genscan,163 microsat,96 mrna,49 mrna,121 mrna,228 mrna,349 mrna,375 nestedRepeats,211 nestedRepeats,300 netBosTau7,165 netBosTau7,226 netHg19,163 netHg19,224 netMm10,163 netMm10,224 netMonDom5,163 netMonDom5,224 refSeqComposite,94 refSeqComposite,130 refSeqComposite,852 refSeqComposite,1383 refSeqComposite,1463 rmsk,323 simpleRepeat,57 transMapEnsemblV5,131 transMapEnsemblV5,148 transMapEnsemblV5,224 transMapEnsemblV5,269 transMapEnsemblV5,291 transMapEnsemblV5,568 transMapEstV5,100 transMapEstV5,117 transMapEstV5,193 transMapEstV5,238 transMapEstV5,260 transMapEstV5,537 transMapRefSeqV5,100 transMapRefSeqV5,117 transMapRefSeqV5,193 transMapRefSeqV5,238 transMapRefSeqV5,260 transMapRefSeqV5,537 transMapRnaV5,100 transMapRnaV5,117 transMapRnaV5,193 transMapRnaV5,238 transMapRnaV5,260 transMapRnaV5,537 transMapV5,63 transMapV5,107 transMapV5,164 transMapV5,206 transMapV5,223 transMapV5,299 transMapV5,344 transMapV5,366 transMapV5,643 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoRefGene,176 morgulis windowmaskerSdust,90 most augustusGene,93 augustusGene,110 nestedRepeats,249 refSeqComposite,580 refSeqComposite,947 transMapV5,93 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly uniprot,1365 motifs uniprot,388 mouse chainBosTau7,1070 chainHg19,1067 chainMm10,1 chainMm10,3 chainMm10,65 chainMm10,97 chainMm10,150 chainMm10,270 chainMm10,297 chainMm10,578 chainMm10,627 chainMm10,1067 chainMonDom5,1067 chainNetBosTau7,1073 chainNetHg19,1070 chainNetMm10,1 chainNetMm10,4 chainNetMm10,68 chainNetMm10,100 chainNetMm10,153 chainNetMm10,273 chainNetMm10,300 chainNetMm10,581 chainNetMm10,630 chainNetMm10,1070 chainNetMm10Viewchain,2 chainNetMm10Viewnet,2 chainNetMonDom5,1070 netBosTau7,1070 netHg19,1067 netMm10,1 netMm10,3 netMm10,65 netMm10,97 netMm10,150 netMm10,270 netMm10,297 netMm10,578 netMm10,627 netMm10,1067 netMonDom5,1067 transMapEnsemblV5,44 transMapEnsemblV5,367 transMapEstV5,336 transMapRefSeqV5,336 transMapRnaV5,336 transMapV5,442 uniprot,521 uniprot,535 mrna mrna,9 mrna,14 mrna,129 mrna,403 mrna,443 mrna,450 transMapEnsemblV5,458 transMapEstV5,427 transMapRefSeqV5,427 transMapRnaV5,18 transMapRnaV5,427 transMapV5,100 transMapV5,533 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,244 mrna,259 mrna,300 mrna,318 mrna,343 mrna,390 transMapEnsemblV5,173 transMapEstV5,142 transMapRefSeqV5,142 transMapRnaV5,142 transMapV5,111 transMapV5,248 much chainBosTau7,888 chainBosTau7,905 chainHg19,885 chainHg19,902 chainMm10,885 chainMm10,902 chainMonDom5,885 chainMonDom5,902 chainNetBosTau7,891 chainNetBosTau7,908 chainNetHg19,888 chainNetHg19,905 chainNetMm10,888 chainNetMm10,905 chainNetMonDom5,888 chainNetMonDom5,905 nestedRepeats,210 netBosTau7,888 netBosTau7,905 netHg19,885 netHg19,902 netMm10,885 netMm10,902 netMonDom5,885 netMonDom5,902 mujica uniprot,1967 multiple chainBosTau7,197 chainHg19,195 chainMm10,195 chainMonDom5,195 chainNetBosTau7,200 chainNetHg19,198 chainNetMm10,198 chainNetMonDom5,198 mrna,206 mrna,406 netBosTau7,197 netHg19,195 netMm10,195 netMonDom5,195 refSeqComposite,1255 refSeqComposite,1302 transMapEnsemblV5,501 transMapEstV5,470 transMapRefSeqV5,470 transMapRnaV5,470 transMapV5,576 uniprot,58 uniprot,1067 uniprot,1095 xenoRefGene,245 munegowda HLTOGAannotvHg38v1,336 must refSeqComposite,303 refSeqComposite,1636 mutagenesis uniprot,353 mutat uniprot,2044 mutated uniprot,618 mutation HLTOGAannotvHg38v1,157 HLTOGAannotvHg38v1,186 HLTOGAannotvHg38v1,233 HLTOGAannotvHg38v1,241 chainBosTau7,186 chainHg19,184 chainMm10,184 chainMonDom5,184 chainNetBosTau7,189 chainNetHg19,187 chainNetMm10,187 chainNetMonDom5,187 netBosTau7,186 netHg19,184 netMm10,184 netMonDom5,184 refSeqComposite,563 mutation-related uniprot,408 mutations HLTOGAannotvHg38v1,276 HLTOGAannotvHg38v1,306 unipMut,1 unipMut,5 uniprot,352 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 refSeqComposite,1328 refSeqComposite,1631 refSeqComposite,1645 n cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 refSeqComposite,918 refSeqComposite,959 refSeqComposite,986 refSeqComposite,1045 refSeqComposite,1072 refSeqComposite,1087 name chainBosTau7,372 chainHg19,369 chainMm10,369 chainMonDom5,369 chainNetBosTau7,375 chainNetHg19,372 chainNetMm10,372 chainNetMonDom5,372 mrna,147 nestedRepeats,136 netBosTau7,372 netHg19,369 netMm10,369 netMonDom5,369 refSeqComposite,759 refSeqComposite,772 refSeqComposite,782 refSeqComposite,790 refSeqComposite,802 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names chainBosTau7,248 chainHg19,246 chainMm10,246 chainMonDom5,246 chainNetBosTau7,251 chainNetHg19,249 chainNetMm10,249 chainNetMonDom5,249 netBosTau7,248 netHg19,246 netMm10,246 netMonDom5,246 refSeqComposite,807 ucscToINSDC,21 ucscToINSDC,24 ucscToRefSeq,16 xenoRefGene,131 native augustusGene,295 transMapEnsemblV5,766 transMapEstV5,735 transMapRefSeqV5,735 transMapRnaV5,735 transMapV5,123 transMapV5,841 natl chainBosTau7,1075 chainHg19,1072 chainMm10,1072 chainMonDom5,1072 chainNetBosTau7,1078 chainNetHg19,1075 chainNetMm10,1075 chainNetMonDom5,1075 netBosTau7,1075 netHg19,1072 netMm10,1072 netMonDom5,1072 natural chainBosTau7,826 chainHg19,823 chainMm10,823 chainMonDom5,823 chainNetBosTau7,829 chainNetHg19,826 chainNetMm10,826 chainNetMonDom5,826 netBosTau7,826 netHg19,823 netMm10,823 netMonDom5,823 nbci uniprot,822 nbsp HLTOGAannotvHg38v1,142 HLTOGAannotvHg38v1,164 HLTOGAannotvHg38v1,211 HLTOGAannotvHg38v1,234 HLTOGAannotvHg38v1,271 chainBosTau7,677 chainHg19,674 chainMm10,674 chainMonDom5,674 chainNetBosTau7,680 chainNetHg19,677 chainNetMm10,677 chainNetMonDom5,677 netBosTau7,677 netHg19,674 netMm10,674 netMonDom5,674 nc_001808 gold,160 ncbi gap,28 gap,31 gap,57 gold,30 gold,33 gold,56 ncbiRefSeq,3 ncbiRefSeqCurated,3 ncbiRefSeqGenomicDiff,5 ncbiRefSeqOther,3 ncbiRefSeqPredicted,3 refSeqComposite,1 refSeqComposite,6 refSeqComposite,13 refSeqComposite,28 refSeqComposite,73 refSeqComposite,80 refSeqComposite,105 refSeqComposite,318 refSeqComposite,374 refSeqComposite,546 refSeqComposite,642 refSeqComposite,649 refSeqComposite,693 refSeqComposite,1160 refSeqComposite,1191 refSeqComposite,1207 refSeqComposite,1728 refSeqComposite,1798 ucscToINSDC,39 ucscToRefSeq,22 ucscToRefSeq,33 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 windowmaskerSdust,29 windowmaskerSdust,43 xenoRefGene,29 xenoRefGene,299 xenoRefGene,368 ncbirefseq refSeqComposite,1411 refSeqComposite,1555 refSeqComposite,1699 ncbirefseqcurated refSeqComposite,1414 ncbirefseqdiffs.bb refSeqComposite,1494 ncbirefseqother.bb refSeqComposite,1492 refSeqComposite,1556 ncbirefseqpredicted refSeqComposite,1417 refSeqComposite,1619 ncbirefseqpredicted.gtf refSeqComposite,1620 ncbirefseqpsl refSeqComposite,1425 ndash refSeqComposite,200 refSeqComposite,211 refSeqComposite,341 refSeqComposite,380 refSeqComposite,435 refSeqComposite,459 refSeqComposite,482 refSeqComposite,519 refSeqComposite,552 refSeqComposite,897 refSeqComposite,931 refSeqComposite,964 refSeqComposite,1022 refSeqComposite,1048 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 refSeqComposite,1648 near-best transMapEnsemblV5,358 transMapEstV5,327 transMapRefSeqV5,327 transMapRnaV5,327 transMapV5,433 necessary chainBosTau7,810 chainHg19,807 chainMm10,807 chainMonDom5,807 chainNetBosTau7,813 chainNetHg19,810 chainNetMm10,810 chainNetMonDom5,810 netBosTau7,810 netHg19,807 netMm10,807 netMonDom5,807 nematodes augustusGene,211 net chainBosTau7,35 chainBosTau7,264 chainBosTau7,267 chainBosTau7,385 chainBosTau7,764 chainHg19,34 chainHg19,262 chainHg19,265 chainHg19,382 chainHg19,761 chainMm10,34 chainMm10,262 chainMm10,265 chainMm10,382 chainMm10,761 chainMonDom5,34 chainMonDom5,262 chainMonDom5,265 chainMonDom5,382 chainMonDom5,761 chainNetBosTau7,3 chainNetBosTau7,12 chainNetBosTau7,38 chainNetBosTau7,267 chainNetBosTau7,270 chainNetBosTau7,388 chainNetBosTau7,767 chainNetBosTau7Viewchain,10 chainNetBosTau7Viewnet,1 chainNetBosTau7Viewnet,10 chainNetHg19,3 chainNetHg19,11 chainNetHg19,37 chainNetHg19,265 chainNetHg19,268 chainNetHg19,385 chainNetHg19,764 chainNetHg19Viewchain,9 chainNetHg19Viewnet,1 chainNetHg19Viewnet,9 chainNetMm10,3 chainNetMm10,11 chainNetMm10,37 chainNetMm10,265 chainNetMm10,268 chainNetMm10,385 chainNetMm10,764 chainNetMm10Viewchain,9 chainNetMm10Viewnet,1 chainNetMm10Viewnet,9 chainNetMonDom5,3 chainNetMonDom5,11 chainNetMonDom5,37 chainNetMonDom5,265 chainNetMonDom5,268 chainNetMonDom5,385 chainNetMonDom5,764 chainNetMonDom5Viewchain,9 chainNetMonDom5Viewnet,1 chainNetMonDom5Viewnet,9 netBosTau7,2 netBosTau7,10 netBosTau7,35 netBosTau7,264 netBosTau7,267 netBosTau7,385 netBosTau7,764 netHg19,2 netHg19,9 netHg19,34 netHg19,262 netHg19,265 netHg19,382 netHg19,761 netMm10,2 netMm10,9 netMm10,34 netMm10,262 netMm10,265 netMm10,382 netMm10,761 netMonDom5,2 netMonDom5,9 netMonDom5,34 netMonDom5,262 netMonDom5,265 netMonDom5,382 netMonDom5,761 transMapV5,140 netclass chainBosTau7,880 chainBosTau7,1003 chainHg19,877 chainHg19,1000 chainMm10,877 chainMm10,1000 chainMonDom5,877 chainMonDom5,1000 chainNetBosTau7,883 chainNetBosTau7,1006 chainNetHg19,880 chainNetHg19,1003 chainNetMm10,880 chainNetMm10,1003 chainNetMonDom5,880 chainNetMonDom5,1003 netBosTau7,880 netBosTau7,1003 netHg19,877 netHg19,1000 netMm10,877 netMm10,1000 netMonDom5,877 netMonDom5,1000 netfilter transMapEnsemblV5,254 transMapEstV5,223 transMapRefSeqV5,223 transMapRnaV5,223 transMapV5,329 nets chainBosTau7,990 chainHg19,987 chainMm10,987 chainMonDom5,987 chainNetBosTau7,993 chainNetHg19,990 chainNetMm10,990 chainNetMonDom5,990 netBosTau7,990 netHg19,987 netMm10,987 netMonDom5,987 transMapEnsemblV5,200 transMapEnsemblV5,243 transMapEnsemblV5,249 transMapEnsemblV5,263 transMapEstV5,169 transMapEstV5,212 transMapEstV5,218 transMapEstV5,232 transMapRefSeqV5,169 transMapRefSeqV5,212 transMapRefSeqV5,218 transMapRefSeqV5,232 transMapRnaV5,169 transMapRnaV5,212 transMapRnaV5,218 transMapRnaV5,232 transMapV5,89 transMapV5,275 transMapV5,318 transMapV5,324 transMapV5,338 netsyntenic chainBosTau7,848 chainBosTau7,1001 chainHg19,845 chainHg19,998 chainMm10,845 chainMm10,998 chainMonDom5,845 chainMonDom5,998 chainNetBosTau7,851 chainNetBosTau7,1004 chainNetHg19,848 chainNetHg19,1001 chainNetMm10,848 chainNetMm10,1001 chainNetMonDom5,848 chainNetMonDom5,1001 netBosTau7,848 netBosTau7,1001 netHg19,845 netHg19,998 netMm10,845 netMm10,998 netMonDom5,845 netMonDom5,998 new augustusGene,329 newer nestedRepeats,270 rmsk,106 newly cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 next chainBosTau7,351 chainBosTau7,380 chainHg19,348 chainHg19,377 chainMm10,348 chainMm10,377 chainMonDom5,348 chainMonDom5,377 chainNetBosTau7,354 chainNetBosTau7,383 chainNetHg19,351 chainNetHg19,380 chainNetMm10,351 chainNetMm10,380 chainNetMonDom5,351 chainNetMonDom5,380 netBosTau7,351 netBosTau7,380 netHg19,348 netHg19,377 netMm10,348 netMm10,377 netMonDom5,348 netMonDom5,377 refSeqComposite,167 refSeqComposite,755 nig augustusGene,270 nm refSeqComposite,225 refSeqComposite,492 nm_ ncbiRefSeq,9 ncbiRefSeqCurated,8 ncbiRefSeqOther,8 nm_012309 refSeqComposite,1139 nm_012309.4 refSeqComposite,1137 no HLTOGAannotvHg38v1,155 HLTOGAannotvHg38v1,184 HLTOGAannotvHg38v1,231 microsat,73 transMapEnsemblV5,223 transMapEstV5,192 transMapRefSeqV5,192 transMapRnaV5,192 transMapV5,298 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 non-alignable chainBosTau7,50 chainHg19,49 chainMm10,49 chainMonDom5,49 chainNetBosTau7,53 chainNetHg19,52 chainNetMm10,52 chainNetMonDom5,52 netBosTau7,50 netHg19,49 netMm10,49 netMonDom5,49 non-coding augustusGene,75 refSeqComposite,1088 xenoRefGene,193 non-protein-coding refSeqComposite,23 xenoRefGene,18 xenoRefGene,201 non-redundant refSeqComposite,1804 xenoRefGene,374 non-white xenoRefGene,3 nonsyn chainBosTau7,557 chainHg19,554 chainMm10,554 chainMonDom5,554 chainNetBosTau7,560 chainNetHg19,557 chainNetMm10,557 chainNetMonDom5,557 netBosTau7,557 netHg19,554 netMm10,554 netMonDom5,554 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not HLTOGAannotvHg38v1,252 HLTOGAannotvHg38v1,266 chainBosTau7,815 chainHg19,812 chainMm10,812 chainMonDom5,812 chainNetBosTau7,818 chainNetHg19,815 chainNetMm10,815 chainNetMonDom5,815 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 mrna,298 ncbiRefSeqOther,7 netBosTau7,815 netHg19,812 netMm10,812 netMonDom5,812 refSeqComposite,177 refSeqComposite,391 refSeqComposite,429 refSeqComposite,474 refSeqComposite,675 refSeqComposite,700 refSeqComposite,1060 refSeqComposite,1138 rmsk,113 rmsk,313 transMapEnsemblV5,62 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 note nestedRepeats,264 refSeqComposite,176 refSeqComposite,1621 transMapEnsemblV5,499 transMapEstV5,468 transMapRefSeqV5,468 transMapRnaV5,468 transMapV5,574 uniprot,695 novel HLTOGAannotvHg38v1,75 transMapEnsemblV5,740 transMapEstV5,709 transMapRefSeqV5,709 transMapRnaV5,709 transMapV5,815 novo augustusGene,304 transMapEnsemblV5,775 transMapEstV5,744 transMapRefSeqV5,744 transMapRnaV5,744 transMapV5,850 now uniprot,1680 np refSeqComposite,227 refSeqComposite,230 np_ ncbiRefSeq,13 ncbiRefSeqCurated,10 ncbiRefSeqOther,12 nr refSeqComposite,226 refSeqComposite,494 nr_ ncbiRefSeq,11 ncbiRefSeqCurated,9 ncbiRefSeqOther,9 ns chainBosTau7,895 chainHg19,892 chainMm10,892 chainMonDom5,892 chainNetBosTau7,898 chainNetHg19,895 chainNetMm10,895 chainNetMonDom5,895 netBosTau7,895 netHg19,892 netMm10,892 netMonDom5,892 nuclear rmsk,155 rmsk,163 nucleic microsat,125 mrna,479 mrna,504 refSeqComposite,1779 refSeqComposite,1812 simpleRepeat,85 uniprot,1997 xenoRefGene,349 xenoRefGene,382 nucleotide cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 ucscToINSDC,6 ucscToINSDC,28 number augustusGene,153 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 rmsk,233 transMapEnsemblV5,427 transMapEnsemblV5,550 transMapEstV5,396 transMapEstV5,519 transMapRefSeqV5,396 transMapRefSeqV5,519 transMapRnaV5,396 transMapRnaV5,519 transMapV5,502 transMapV5,625 o refSeqComposite,1761 xenoRefGene,331 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observed cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 uniprot,1114 obtain transMapEnsemblV5,652 transMapEstV5,621 transMapRefSeqV5,621 transMapRnaV5,621 transMapV5,727 uniprot,1803 obtained augustusGene,126 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 refSeqComposite,1486 refSeqComposite,1506 transMapEnsemblV5,157 transMapEnsemblV5,612 transMapEstV5,126 transMapEstV5,581 transMapRefSeqV5,126 transMapRefSeqV5,581 transMapRnaV5,126 transMapRnaV5,581 transMapV5,232 transMapV5,687 uniprot,1506 uniprot,1695 occasional refSeqComposite,63 occur simpleRepeat,36 oct augustusGene,334 chainBosTau7,4 chainBosTau7,67 chainBosTau7,308 chainMonDom5,4 chainMonDom5,66 chainMonDom5,306 chainNetBosTau7,5 chainNetBosTau7,70 chainNetBosTau7,311 chainNetBosTau7Viewchain,3 chainNetBosTau7Viewnet,3 chainNetMonDom5,5 chainNetMonDom5,69 chainNetMonDom5,309 chainNetMonDom5Viewchain,3 chainNetMonDom5Viewnet,3 netBosTau7,4 netBosTau7,67 netBosTau7,308 netMonDom5,4 netMonDom5,66 netMonDom5,306 of HLTOGAannotvHg38v1,49 HLTOGAannotvHg38v1,81 HLTOGAannotvHg38v1,112 HLTOGAannotvHg38v1,115 HLTOGAannotvHg38v1,146 HLTOGAannotvHg38v1,168 HLTOGAannotvHg38v1,180 HLTOGAannotvHg38v1,201 HLTOGAannotvHg38v1,215 HLTOGAannotvHg38v1,227 HLTOGAannotvHg38v1,246 augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 chainBosTau7,18 chainBosTau7,65 chainBosTau7,184 chainBosTau7,204 chainBosTau7,257 chainBosTau7,279 chainBosTau7,363 chainBosTau7,373 chainBosTau7,491 chainBosTau7,511 chainBosTau7,646 chainBosTau7,651 chainBosTau7,669 chainBosTau7,689 chainBosTau7,889 chainBosTau7,964 chainBosTau7,986 chainBosTau7,1010 chainBosTau7,1024 chainHg19,17 chainHg19,64 chainHg19,182 chainHg19,202 chainHg19,255 chainHg19,277 chainHg19,360 chainHg19,370 chainHg19,488 chainHg19,508 chainHg19,643 chainHg19,648 chainHg19,666 chainHg19,686 chainHg19,886 chainHg19,961 chainHg19,983 chainHg19,1007 chainHg19,1021 chainMm10,17 chainMm10,64 chainMm10,182 chainMm10,202 chainMm10,255 chainMm10,277 chainMm10,360 chainMm10,370 chainMm10,488 chainMm10,508 chainMm10,643 chainMm10,648 chainMm10,666 chainMm10,686 chainMm10,886 chainMm10,961 chainMm10,983 chainMm10,1007 chainMm10,1021 chainMonDom5,17 chainMonDom5,64 chainMonDom5,182 chainMonDom5,202 chainMonDom5,255 chainMonDom5,277 chainMonDom5,360 chainMonDom5,370 chainMonDom5,488 chainMonDom5,508 chainMonDom5,643 chainMonDom5,648 chainMonDom5,666 chainMonDom5,686 chainMonDom5,886 chainMonDom5,961 chainMonDom5,983 chainMonDom5,1007 chainMonDom5,1021 chainNetBosTau7,21 chainNetBosTau7,68 chainNetBosTau7,187 chainNetBosTau7,207 chainNetBosTau7,260 chainNetBosTau7,282 chainNetBosTau7,366 chainNetBosTau7,376 chainNetBosTau7,494 chainNetBosTau7,514 chainNetBosTau7,649 chainNetBosTau7,654 chainNetBosTau7,672 chainNetBosTau7,692 chainNetBosTau7,892 chainNetBosTau7,967 chainNetBosTau7,989 chainNetBosTau7,1013 chainNetBosTau7,1027 chainNetHg19,20 chainNetHg19,67 chainNetHg19,185 chainNetHg19,205 chainNetHg19,258 chainNetHg19,280 chainNetHg19,363 chainNetHg19,373 chainNetHg19,491 chainNetHg19,511 chainNetHg19,646 chainNetHg19,651 chainNetHg19,669 chainNetHg19,689 chainNetHg19,889 chainNetHg19,964 chainNetHg19,986 chainNetHg19,1010 chainNetHg19,1024 chainNetMm10,20 chainNetMm10,67 chainNetMm10,185 chainNetMm10,205 chainNetMm10,258 chainNetMm10,280 chainNetMm10,363 chainNetMm10,373 chainNetMm10,491 chainNetMm10,511 chainNetMm10,646 chainNetMm10,651 chainNetMm10,669 chainNetMm10,689 chainNetMm10,889 chainNetMm10,964 chainNetMm10,986 chainNetMm10,1010 chainNetMm10,1024 chainNetMonDom5,20 chainNetMonDom5,67 chainNetMonDom5,185 chainNetMonDom5,205 chainNetMonDom5,258 chainNetMonDom5,280 chainNetMonDom5,363 chainNetMonDom5,373 chainNetMonDom5,491 chainNetMonDom5,511 chainNetMonDom5,646 chainNetMonDom5,651 chainNetMonDom5,669 chainNetMonDom5,689 chainNetMonDom5,889 chainNetMonDom5,964 chainNetMonDom5,986 chainNetMonDom5,1010 chainNetMonDom5,1024 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 gap,41 gap,64 gap,83 gap,89 gap,123 gc5BaseBw,19 gc5BaseBw,46 gc5BaseBw,52 gc5BaseBw,67 gc5BaseBw,76 genscan,43 genscan,110 genscan,134 genscan,212 gold,43 gold,63 gold,89 gold,114 gold,144 microsat,27 microsat,55 microsat,64 microsat,81 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,264 mrna,367 mrna,426 ncbiRefSeqPsl,5 nestedRepeats,4 nestedRepeats,20 nestedRepeats,27 nestedRepeats,48 nestedRepeats,83 nestedRepeats,93 nestedRepeats,108 nestedRepeats,189 nestedRepeats,195 nestedRepeats,203 nestedRepeats,228 nestedRepeats,252 nestedRepeats,350 nestedRepeats,365 nestedRepeats,378 nestedRepeats,399 netBosTau7,18 netBosTau7,65 netBosTau7,184 netBosTau7,204 netBosTau7,257 netBosTau7,279 netBosTau7,363 netBosTau7,373 netBosTau7,491 netBosTau7,511 netBosTau7,646 netBosTau7,651 netBosTau7,669 netBosTau7,689 netBosTau7,889 netBosTau7,964 netBosTau7,986 netBosTau7,1010 netBosTau7,1024 netHg19,17 netHg19,64 netHg19,182 netHg19,202 netHg19,255 netHg19,277 netHg19,360 netHg19,370 netHg19,488 netHg19,508 netHg19,643 netHg19,648 netHg19,666 netHg19,686 netHg19,886 netHg19,961 netHg19,983 netHg19,1007 netHg19,1021 netMm10,17 netMm10,64 netMm10,182 netMm10,202 netMm10,255 netMm10,277 netMm10,360 netMm10,370 netMm10,488 netMm10,508 netMm10,643 netMm10,648 netMm10,666 netMm10,686 netMm10,886 netMm10,961 netMm10,983 netMm10,1007 netMm10,1021 netMonDom5,17 netMonDom5,64 netMonDom5,182 netMonDom5,202 netMonDom5,255 netMonDom5,277 netMonDom5,360 netMonDom5,370 netMonDom5,488 netMonDom5,508 netMonDom5,643 netMonDom5,648 netMonDom5,666 netMonDom5,686 netMonDom5,886 netMonDom5,961 netMonDom5,983 netMonDom5,1007 netMonDom5,1021 refSeqComposite,162 refSeqComposite,195 refSeqComposite,213 refSeqComposite,260 refSeqComposite,321 refSeqComposite,343 refSeqComposite,437 refSeqComposite,489 refSeqComposite,521 refSeqComposite,528 refSeqComposite,554 refSeqComposite,612 refSeqComposite,632 refSeqComposite,710 refSeqComposite,738 refSeqComposite,787 refSeqComposite,796 refSeqComposite,876 refSeqComposite,891 refSeqComposite,943 refSeqComposite,989 refSeqComposite,1007 refSeqComposite,1055 refSeqComposite,1243 refSeqComposite,1275 refSeqComposite,1348 refSeqComposite,1429 refSeqComposite,1431 refSeqComposite,1501 refSeqComposite,1571 refSeqComposite,1651 refSeqComposite,1697 refSeqComposite,1701 refSeqComposite,1807 rmsk,39 rmsk,59 rmsk,84 rmsk,151 rmsk,206 rmsk,216 rmsk,234 rmsk,246 rmsk,264 rmsk,373 rmsk,388 rmsk,401 rmsk,422 simpleRepeat,40 transMapEnsemblV5,85 transMapEnsemblV5,140 transMapEnsemblV5,169 transMapEnsemblV5,209 transMapEnsemblV5,275 transMapEnsemblV5,282 transMapEnsemblV5,298 transMapEnsemblV5,310 transMapEnsemblV5,323 transMapEnsemblV5,341 transMapEnsemblV5,360 transMapEnsemblV5,378 transMapEnsemblV5,457 transMapEnsemblV5,508 transMapEnsemblV5,551 transMapEnsemblV5,739 transMapEnsemblV5,804 transMapEstV5,54 transMapEstV5,109 transMapEstV5,138 transMapEstV5,178 transMapEstV5,244 transMapEstV5,251 transMapEstV5,267 transMapEstV5,279 transMapEstV5,292 transMapEstV5,310 transMapEstV5,329 transMapEstV5,347 transMapEstV5,426 transMapEstV5,477 transMapEstV5,520 transMapEstV5,708 transMapEstV5,773 transMapRefSeqV5,54 transMapRefSeqV5,109 transMapRefSeqV5,138 transMapRefSeqV5,178 transMapRefSeqV5,244 transMapRefSeqV5,251 transMapRefSeqV5,267 transMapRefSeqV5,279 transMapRefSeqV5,292 transMapRefSeqV5,310 transMapRefSeqV5,329 transMapRefSeqV5,347 transMapRefSeqV5,426 transMapRefSeqV5,477 transMapRefSeqV5,520 transMapRefSeqV5,708 transMapRefSeqV5,773 transMapRnaV5,54 transMapRnaV5,109 transMapRnaV5,138 transMapRnaV5,178 transMapRnaV5,244 transMapRnaV5,251 transMapRnaV5,267 transMapRnaV5,279 transMapRnaV5,292 transMapRnaV5,310 transMapRnaV5,329 transMapRnaV5,347 transMapRnaV5,426 transMapRnaV5,477 transMapRnaV5,520 transMapRnaV5,708 transMapRnaV5,773 transMapV5,55 transMapV5,215 transMapV5,244 transMapV5,284 transMapV5,350 transMapV5,357 transMapV5,373 transMapV5,385 transMapV5,398 transMapV5,416 transMapV5,435 transMapV5,453 transMapV5,532 transMapV5,583 transMapV5,626 transMapV5,814 transMapV5,879 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,233 xenoRefGene,265 xenoRefGene,377 off chainBosTau7,342 chainBosTau7,348 chainHg19,339 chainHg19,345 chainMm10,339 chainMm10,345 chainMonDom5,339 chainMonDom5,345 chainNetBosTau7,345 chainNetBosTau7,351 chainNetHg19,342 chainNetHg19,348 chainNetMm10,342 chainNetMm10,348 chainNetMonDom5,342 chainNetMonDom5,348 netBosTau7,342 netBosTau7,348 netHg19,339 netHg19,345 netMm10,339 netMm10,345 netMonDom5,339 netMonDom5,345 refSeqComposite,810 xenoRefGene,134 offers genscan,79 often HLTOGAannotvHg38v1,206 chainBosTau7,215 chainBosTau7,227 chainHg19,213 chainHg19,225 chainMm10,213 chainMm10,225 chainMonDom5,213 chainMonDom5,225 chainNetBosTau7,218 chainNetBosTau7,230 chainNetHg19,216 chainNetHg19,228 chainNetMm10,216 chainNetMm10,228 chainNetMonDom5,216 chainNetMonDom5,228 netBosTau7,215 netBosTau7,227 netHg19,213 netHg19,225 netMm10,213 netMm10,225 netMonDom5,213 netMonDom5,225 older uniprot,1560 uniprot,1647 omim refSeqComposite,784 refSeqComposite,803 omitted nestedRepeats,165 on HLTOGAannotvHg38v1,79 HLTOGAannotvHg38v1,295 augustusGene,29 augustusGene,37 augustusGene,151 chainBosTau7,330 chainBosTau7,356 chainBosTau7,459 chainBosTau7,473 chainBosTau7,523 chainBosTau7,528 chainBosTau7,543 chainBosTau7,776 chainHg19,327 chainHg19,353 chainHg19,456 chainHg19,470 chainHg19,520 chainHg19,525 chainHg19,540 chainHg19,773 chainMm10,327 chainMm10,353 chainMm10,456 chainMm10,470 chainMm10,520 chainMm10,525 chainMm10,540 chainMm10,773 chainMonDom5,327 chainMonDom5,353 chainMonDom5,456 chainMonDom5,470 chainMonDom5,520 chainMonDom5,525 chainMonDom5,540 chainMonDom5,773 chainNetBosTau7,333 chainNetBosTau7,359 chainNetBosTau7,462 chainNetBosTau7,476 chainNetBosTau7,526 chainNetBosTau7,531 chainNetBosTau7,546 chainNetBosTau7,779 chainNetHg19,330 chainNetHg19,356 chainNetHg19,459 chainNetHg19,473 chainNetHg19,523 chainNetHg19,528 chainNetHg19,543 chainNetHg19,776 chainNetMm10,330 chainNetMm10,356 chainNetMm10,459 chainNetMm10,473 chainNetMm10,523 chainNetMm10,528 chainNetMm10,543 chainNetMm10,776 chainNetMonDom5,330 chainNetMonDom5,356 chainNetMonDom5,459 chainNetMonDom5,473 chainNetMonDom5,523 chainNetMonDom5,528 chainNetMonDom5,543 chainNetMonDom5,776 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 gap,86 genscan,27 genscan,52 mrna,178 mrna,227 nestedRepeats,141 nestedRepeats,176 nestedRepeats,277 netBosTau7,330 netBosTau7,356 netBosTau7,459 netBosTau7,473 netBosTau7,523 netBosTau7,528 netBosTau7,543 netBosTau7,776 netHg19,327 netHg19,353 netHg19,456 netHg19,470 netHg19,520 netHg19,525 netHg19,540 netHg19,773 netMm10,327 netMm10,353 netMm10,456 netMm10,470 netMm10,520 netMm10,525 netMm10,540 netMm10,773 netMonDom5,327 netMonDom5,353 netMonDom5,456 netMonDom5,470 netMonDom5,520 netMonDom5,525 netMonDom5,540 netMonDom5,773 refSeqComposite,132 refSeqComposite,182 refSeqComposite,239 refSeqComposite,253 refSeqComposite,361 refSeqComposite,517 refSeqComposite,570 refSeqComposite,976 refSeqComposite,1120 refSeqComposite,1601 refSeqComposite,1643 refSeqComposite,1681 refSeqComposite,1706 refSeqComposite,1775 rmsk,74 transMapEnsemblV5,570 transMapEnsemblV5,807 transMapEstV5,539 transMapEstV5,776 transMapRefSeqV5,539 transMapRefSeqV5,776 transMapRnaV5,539 transMapRnaV5,776 transMapV5,103 transMapV5,645 transMapV5,882 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 xenoRefGene,345 once mrna,212 uniprot,647 one augustusGene,169 chainBosTau7,192 chainBosTau7,364 chainBosTau7,510 chainBosTau7,803 chainBosTau7,899 chainHg19,190 chainHg19,361 chainHg19,507 chainHg19,800 chainHg19,896 chainMm10,190 chainMm10,361 chainMm10,507 chainMm10,800 chainMm10,896 chainMonDom5,190 chainMonDom5,361 chainMonDom5,507 chainMonDom5,800 chainMonDom5,896 chainNetBosTau7,195 chainNetBosTau7,367 chainNetBosTau7,513 chainNetBosTau7,806 chainNetBosTau7,902 chainNetHg19,193 chainNetHg19,364 chainNetHg19,510 chainNetHg19,803 chainNetHg19,899 chainNetMm10,193 chainNetMm10,364 chainNetMm10,510 chainNetMm10,803 chainNetMm10,899 chainNetMonDom5,193 chainNetMonDom5,364 chainNetMonDom5,510 chainNetMonDom5,803 chainNetMonDom5,899 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 gold,156 mrna,119 mrna,230 mrna,263 netBosTau7,192 netBosTau7,364 netBosTau7,510 netBosTau7,803 netBosTau7,899 netHg19,190 netHg19,361 netHg19,507 netHg19,800 netHg19,896 netMm10,190 netMm10,361 netMm10,507 netMm10,800 netMm10,896 netMonDom5,190 netMonDom5,361 netMonDom5,507 netMonDom5,800 netMonDom5,896 transMapV5,78 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 ones transMapEnsemblV5,50 uniprot,1041 ongoing uniprot,1569 only chainBosTau7,360 chainHg19,357 chainMm10,357 chainMonDom5,357 chainNetBosTau7,363 chainNetHg19,360 chainNetMm10,360 chainNetMonDom5,360 cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 microsat,61 mrna,103 mrna,243 mrna,316 mrna,417 netBosTau7,360 netHg19,357 netMm10,357 netMonDom5,357 refSeqComposite,158 refSeqComposite,218 refSeqComposite,235 refSeqComposite,247 refSeqComposite,516 refSeqComposite,568 refSeqComposite,1266 refSeqComposite,1538 transMapEnsemblV5,49 transMapEnsemblV5,653 transMapEstV5,622 transMapRefSeqV5,622 transMapRnaV5,622 transMapV5,728 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoRefGene,210 xenoRefGene,256 oommen transMapEnsemblV5,731 transMapEstV5,700 transMapRefSeqV5,700 transMapRnaV5,700 transMapV5,806 open-3.0 nestedRepeats,331 rmsk,354 opin nestedRepeats,385 nestedRepeats,407 rmsk,408 rmsk,430 opossum chainMonDom5,1 chainMonDom5,3 chainMonDom5,65 chainMonDom5,97 chainMonDom5,150 chainMonDom5,270 chainMonDom5,297 chainMonDom5,578 chainMonDom5,627 chainNetMonDom5,1 chainNetMonDom5,4 chainNetMonDom5,68 chainNetMonDom5,100 chainNetMonDom5,153 chainNetMonDom5,273 chainNetMonDom5,300 chainNetMonDom5,581 chainNetMonDom5,630 chainNetMonDom5Viewchain,2 chainNetMonDom5Viewnet,2 netMonDom5,1 netMonDom5,3 netMonDom5,65 netMonDom5,97 netMonDom5,150 netMonDom5,270 netMonDom5,297 netMonDom5,578 netMonDom5,627 opposite chainBosTau7,555 chainHg19,552 chainMm10,552 chainMonDom5,552 chainNetBosTau7,558 chainNetHg19,555 chainNetMm10,555 chainNetMonDom5,555 netBosTau7,555 netHg19,552 netMm10,552 netMonDom5,552 option augustusGene,167 augustusGene,187 genscan,94 mrna,353 refSeqComposite,777 refSeqComposite,842 transMapEnsemblV5,135 transMapEstV5,104 transMapRefSeqV5,104 transMapRnaV5,104 transMapV5,210 xenoRefGene,114 xenoRefGene,166 optional refSeqComposite,820 xenoRefGene,144 options gc5BaseBw,70 genscan,85 mrna,384 or HLTOGAannotvHg38v1,39 HLTOGAannotvHg38v1,96 HLTOGAannotvHg38v1,264 chainBosTau7,31 chainBosTau7,131 chainBosTau7,154 chainBosTau7,187 chainBosTau7,494 chainBosTau7,871 chainBosTau7,900 chainHg19,30 chainHg19,129 chainHg19,152 chainHg19,185 chainHg19,491 chainHg19,868 chainHg19,897 chainMm10,30 chainMm10,129 chainMm10,152 chainMm10,185 chainMm10,491 chainMm10,868 chainMm10,897 chainMonDom5,30 chainMonDom5,129 chainMonDom5,152 chainMonDom5,185 chainMonDom5,491 chainMonDom5,868 chainMonDom5,897 chainNetBosTau7,34 chainNetBosTau7,134 chainNetBosTau7,157 chainNetBosTau7,190 chainNetBosTau7,497 chainNetBosTau7,874 chainNetBosTau7,903 chainNetHg19,33 chainNetHg19,132 chainNetHg19,155 chainNetHg19,188 chainNetHg19,494 chainNetHg19,871 chainNetHg19,900 chainNetMm10,33 chainNetMm10,132 chainNetMm10,155 chainNetMm10,188 chainNetMm10,494 chainNetMm10,871 chainNetMm10,900 chainNetMonDom5,33 chainNetMonDom5,132 chainNetMonDom5,155 chainNetMonDom5,188 chainNetMonDom5,494 chainNetMonDom5,871 chainNetMonDom5,900 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 mrna,120 mrna,255 mrna,274 mrna,283 ncbiRefSeqCurated,11 ncbiRefSeqOther,13 ncbiRefSeqPredicted,9 nestedRepeats,96 nestedRepeats,117 nestedRepeats,158 netBosTau7,31 netBosTau7,131 netBosTau7,154 netBosTau7,187 netBosTau7,494 netBosTau7,871 netBosTau7,900 netHg19,30 netHg19,129 netHg19,152 netHg19,185 netHg19,491 netHg19,868 netHg19,897 netMm10,30 netMm10,129 netMm10,152 netMm10,185 netMm10,491 netMm10,868 netMm10,897 netMonDom5,30 netMonDom5,129 netMonDom5,152 netMonDom5,185 netMonDom5,491 netMonDom5,868 netMonDom5,897 refSeqComposite,86 refSeqComposite,122 refSeqComposite,228 refSeqComposite,280 refSeqComposite,355 refSeqComposite,401 refSeqComposite,410 refSeqComposite,416 refSeqComposite,425 refSeqComposite,623 refSeqComposite,644 refSeqComposite,692 refSeqComposite,783 refSeqComposite,793 refSeqComposite,808 refSeqComposite,952 refSeqComposite,974 refSeqComposite,1053 refSeqComposite,1315 refSeqComposite,1330 refSeqComposite,1497 refSeqComposite,1519 rmsk,251 rmsk,280 transMapEnsemblV5,19 transMapEnsemblV5,534 transMapEnsemblV5,562 transMapEnsemblV5,605 transMapEnsemblV5,625 transMapEstV5,503 transMapEstV5,531 transMapEstV5,574 transMapEstV5,594 transMapRefSeqV5,503 transMapRefSeqV5,531 transMapRefSeqV5,574 transMapRefSeqV5,594 transMapRnaV5,503 transMapRnaV5,531 transMapRnaV5,574 transMapRnaV5,594 transMapV5,47 transMapV5,609 transMapV5,637 transMapV5,680 transMapV5,700 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoRefGene,132 order gap,80 gold,111 uniprot,872 organ mrna,144 mrna,150 organism chainBosTau7,339 chainBosTau7,369 chainHg19,336 chainHg19,366 chainMm10,336 chainMm10,366 chainMonDom5,336 chainMonDom5,366 chainNetBosTau7,342 chainNetBosTau7,372 chainNetHg19,339 chainNetHg19,369 chainNetMm10,339 chainNetMm10,369 chainNetMonDom5,339 chainNetMonDom5,369 netBosTau7,339 netBosTau7,369 netHg19,336 netHg19,366 netMm10,336 netMm10,366 netMonDom5,336 netMonDom5,366 organisms chainBosTau7,916 chainHg19,913 chainMm10,913 chainMonDom5,913 chainNetBosTau7,919 chainNetHg19,916 chainNetMm10,916 chainNetMonDom5,916 nestedRepeats,295 netBosTau7,916 netHg19,913 netMm10,913 netMonDom5,913 rmsk,302 transMapEnsemblV5,160 transMapEnsemblV5,218 transMapEstV5,129 transMapEstV5,187 transMapRefSeqV5,129 transMapRefSeqV5,187 transMapRnaV5,129 transMapRnaV5,187 transMapV5,65 transMapV5,153 transMapV5,235 transMapV5,293 uniprot,998 xenoRefGene,21 organized refSeqComposite,1378 organizes chainBosTau7,624 chainHg19,621 chainMm10,621 chainMonDom5,621 chainNetBosTau7,627 chainNetHg19,624 chainNetMm10,624 chainNetMonDom5,624 netBosTau7,624 netHg19,621 netMm10,621 netMonDom5,621 orientation chainBosTau7,556 chainHg19,553 chainMm10,553 chainMonDom5,553 chainNetBosTau7,559 chainNetHg19,556 chainNetMm10,556 chainNetMonDom5,556 cytoBandIdeo,6 gap,82 gold,113 netBosTau7,556 netHg19,553 netMm10,553 netMonDom5,553 origin nestedRepeats,398 rmsk,421 original nestedRepeats,84 orthologous HLTOGAannotvHg38v1,121 transMapEnsemblV5,87 transMapEstV5,56 transMapRefSeqV5,56 transMapRnaV5,56 transMapV5,57 orthologs HLTOGAannotvHg38v1,20 HLTOGAannotvHg38v1,33 HLTOGAannotvHg38v1,93 chainBosTau7,292 chainHg19,290 chainMm10,290 chainMonDom5,290 chainNetBosTau7,295 chainNetHg19,293 chainNetMm10,293 chainNetMonDom5,293 netBosTau7,292 netHg19,290 netMm10,290 netMonDom5,290 transMapV5,95 orthology HLTOGAannotvHg38v1,303 HLTOGAannotvHg38v1,360 osipova HLTOGAannotvHg38v1,338 ostell mrna,474 mrna,498 other augustusGene,208 chainBosTau7,25 chainBosTau7,421 chainBosTau7,514 chainHg19,24 chainHg19,418 chainHg19,511 chainMm10,24 chainMm10,418 chainMm10,511 chainMonDom5,24 chainMonDom5,418 chainMonDom5,511 chainNetBosTau7,28 chainNetBosTau7,424 chainNetBosTau7,517 chainNetHg19,27 chainNetHg19,421 chainNetHg19,514 chainNetMm10,27 chainNetMm10,421 chainNetMm10,514 chainNetMonDom5,27 chainNetMonDom5,421 chainNetMonDom5,514 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 ncbiRefSeqOther,2 ncbiRefSeqOther,5 nestedRepeats,376 netBosTau7,25 netBosTau7,421 netBosTau7,514 netHg19,24 netHg19,418 netHg19,511 netMm10,24 netMm10,418 netMm10,511 netMonDom5,24 netMonDom5,418 netMonDom5,511 refSeqComposite,275 refSeqComposite,379 refSeqComposite,382 refSeqComposite,1372 refSeqComposite,1398 rmsk,195 rmsk,399 transMapEnsemblV5,30 transMapEnsemblV5,46 transMapEnsemblV5,371 transMapEstV5,28 transMapEstV5,340 transMapRefSeqV5,28 transMapRefSeqV5,340 transMapRnaV5,28 transMapRnaV5,340 transMapV5,27 transMapV5,446 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoRefGene,1 xenoRefGene,22 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 nestedRepeats,214 uniprot,1312 uniprot,1344 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 transMapEnsemblV5,248 transMapEstV5,217 transMapRefSeqV5,217 transMapRnaV5,217 transMapV5,323 ouml augustusGene,269 our augustusGene,43 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 genscan,58 refSeqComposite,138 refSeqComposite,1326 refSeqComposite,1333 refSeqComposite,1349 refSeqComposite,1364 refSeqComposite,1488 refSeqComposite,1508 refSeqComposite,1629 refSeqComposite,1682 refSeqComposite,1689 refSeqComposite,1707 rmsk,124 rmsk,129 transMapEnsemblV5,559 transMapEnsemblV5,565 transMapEnsemblV5,575 transMapEnsemblV5,614 transMapEstV5,528 transMapEstV5,534 transMapEstV5,544 transMapEstV5,583 transMapRefSeqV5,528 transMapRefSeqV5,534 transMapRefSeqV5,544 transMapRefSeqV5,583 transMapRnaV5,528 transMapRnaV5,534 transMapRnaV5,544 transMapRnaV5,583 transMapV5,634 transMapV5,640 transMapV5,650 transMapV5,689 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 out chainBosTau7,645 chainHg19,642 chainMm10,642 chainMonDom5,642 chainNetBosTau7,648 chainNetHg19,645 chainNetMm10,645 chainNetMonDom5,645 netBosTau7,645 netHg19,642 netMm10,642 netMonDom5,642 output cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 nestedRepeats,26 nestedRepeats,110 windowmaskerSdust,63 windowmaskerSdust,72 outputs rmsk,35 outside refSeqComposite,690 uniprot,558 over chainBosTau7,200 chainBosTau7,660 chainHg19,198 chainHg19,657 chainMm10,198 chainMm10,657 chainMonDom5,198 chainMonDom5,657 chainNetBosTau7,203 chainNetBosTau7,663 chainNetHg19,201 chainNetHg19,660 chainNetMm10,201 chainNetMm10,660 chainNetMonDom5,201 chainNetMonDom5,660 cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 netBosTau7,200 netBosTau7,660 netHg19,198 netHg19,657 netMm10,198 netMm10,657 netMonDom5,198 netMonDom5,657 refSeqComposite,1035 uniprot,522 uniprot,536 overlapping chainBosTau7,116 chainBosTau7,180 chainHg19,114 chainHg19,178 chainMm10,114 chainMm10,178 chainMonDom5,114 chainMonDom5,178 chainNetBosTau7,119 chainNetBosTau7,183 chainNetHg19,117 chainNetHg19,181 chainNetMm10,117 chainNetMm10,181 chainNetMonDom5,117 chainNetMonDom5,181 netBosTau7,116 netBosTau7,180 netHg19,114 netHg19,178 netMm10,114 netMm10,178 netMonDom5,114 netMonDom5,178 own uniprot,724 p genscan,205 nestedRepeats,329 rmsk,352 pac chainBosTau7,1044 chainHg19,1041 chainMm10,1041 chainMonDom5,1041 chainNetBosTau7,1047 chainNetHg19,1044 chainNetMm10,1044 chainNetMonDom5,1044 netBosTau7,1044 netHg19,1041 netMm10,1041 netMonDom5,1041 pack chainBosTau7,237 chainHg19,235 chainMm10,235 chainMonDom5,235 chainNetBosTau7,240 chainNetHg19,238 chainNetMm10,238 chainNetMonDom5,238 nestedRepeats,116 netBosTau7,237 netHg19,235 netMm10,235 netMonDom5,235 page cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 genscan,78 genscan,123 mrna,59 mrna,364 mrna,385 refSeqComposite,114 refSeqComposite,742 refSeqComposite,867 refSeqComposite,1127 refSeqComposite,1646 rmsk,77 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoRefGene,100 xenoRefGene,191 pages chainBosTau7,781 chainHg19,778 chainMm10,778 chainMonDom5,778 chainNetBosTau7,784 chainNetHg19,781 chainNetMm10,781 chainNetMonDom5,781 netBosTau7,781 netHg19,778 netMm10,778 netMonDom5,778 pair gap,96 pairwise chainBosTau7,1022 chainBosTau7,1040 chainHg19,1019 chainHg19,1037 chainMm10,1019 chainMm10,1037 chainMonDom5,1019 chainMonDom5,1037 chainNetBosTau7,1025 chainNetBosTau7,1043 chainNetHg19,1022 chainNetHg19,1040 chainNetMm10,1022 chainNetMm10,1040 chainNetMonDom5,1022 chainNetMonDom5,1040 netBosTau7,1022 netBosTau7,1040 netHg19,1019 netHg19,1037 netMm10,1019 netMm10,1037 netMonDom5,1019 netMonDom5,1037 transMapEnsemblV5,339 transMapEstV5,308 transMapRefSeqV5,308 transMapRnaV5,308 transMapV5,84 transMapV5,414 paradigm HLTOGAannotvHg38v1,76 paralogous transMapEnsemblV5,302 transMapEstV5,271 transMapRefSeqV5,271 transMapRnaV5,271 transMapV5,377 paralogs HLTOGAannotvHg38v1,95 chainBosTau7,230 chainHg19,228 chainMm10,228 chainMonDom5,228 chainNetBosTau7,233 chainNetHg19,231 chainNetMm10,231 chainNetMonDom5,231 netBosTau7,230 netHg19,228 netMm10,228 netMonDom5,228 transMapV5,161 parameters windowmaskerSdust,57 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 parenthesis gold,148 part chainBosTau7,278 chainHg19,276 chainMm10,276 chainMonDom5,276 chainNetBosTau7,281 chainNetHg19,279 chainNetMm10,279 chainNetMonDom5,279 netBosTau7,278 netHg19,276 netMm10,276 netMonDom5,276 refSeqComposite,527 partially HLTOGAannotvHg38v1,165 particular augustusGene,234 chainBosTau7,202 chainHg19,200 chainMm10,200 chainMonDom5,200 chainNetBosTau7,205 chainNetHg19,203 chainNetMm10,203 chainNetMonDom5,203 netBosTau7,202 netHg19,200 netMm10,200 netMonDom5,200 refSeqComposite,297 uniprot,1019 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts HLTOGAannotvHg38v1,200 chainBosTau7,40 chainBosTau7,51 chainHg19,39 chainHg19,50 chainMm10,39 chainMm10,50 chainMonDom5,39 chainMonDom5,50 chainNetBosTau7,43 chainNetBosTau7,54 chainNetHg19,42 chainNetHg19,53 chainNetMm10,42 chainNetMm10,53 chainNetMonDom5,42 chainNetMonDom5,53 netBosTau7,40 netBosTau7,51 netHg19,39 netHg19,50 netMm10,39 netMm10,50 netMonDom5,39 netMonDom5,50 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 patterns augustusGene,56 pennsylvania chainBosTau7,927 chainBosTau7,1030 chainHg19,924 chainHg19,1027 chainMm10,924 chainMm10,1027 chainMonDom5,924 chainMonDom5,1027 chainNetBosTau7,930 chainNetBosTau7,1033 chainNetHg19,927 chainNetHg19,1030 chainNetMm10,927 chainNetMm10,1030 chainNetMonDom5,927 chainNetMonDom5,1030 netBosTau7,927 netBosTau7,1030 netHg19,924 netHg19,1027 netMm10,924 netMm10,1027 netMonDom5,924 netMonDom5,1027 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides unipLocSignal,5 uniprot,239 uniprot,512 percent gc5BaseBw,2 gc5BaseBw,4 gc5BaseBw,14 percentage cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5BaseBw,18 perfect microsat,31 performed cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 period microsat,65 permitted rmsk,314 ph.d chainBosTau7,1027 chainHg19,1024 chainMm10,1024 chainMonDom5,1024 chainNetBosTau7,1030 chainNetHg19,1027 chainNetMm10,1027 chainNetMonDom5,1027 netBosTau7,1027 netHg19,1024 netMm10,1024 netMonDom5,1024 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 phylofit transMapEnsemblV5,230 transMapEstV5,199 transMapRefSeqV5,199 transMapRnaV5,199 transMapV5,305 pia uniprot,1971 pick uniprot,1089 pipeline refSeqComposite,1193 uniprot,1537 pipelines uniprot,1850 place chainBosTau7,800 chainHg19,797 chainMm10,797 chainMonDom5,797 chainNetBosTau7,803 chainNetHg19,800 chainNetMm10,800 chainNetMonDom5,800 netBosTau7,800 netHg19,797 netMm10,797 netMonDom5,797 placed chainBosTau7,842 chainHg19,839 chainMm10,839 chainMonDom5,839 chainNetBosTau7,845 chainNetHg19,842 chainNetMm10,842 chainNetMonDom5,842 netBosTau7,842 netHg19,839 netMm10,839 netMonDom5,839 placement refSeqComposite,968 places mrna,407 refSeqComposite,1256 xenoRefGene,246 please refSeqComposite,103 refSeqComposite,1113 refSeqComposite,1686 uniprot,685 uniprot,1439 uniprot,1826 plos transMapEnsemblV5,811 transMapEstV5,780 transMapRefSeqV5,780 transMapRnaV5,780 transMapV5,886 plus refSeqComposite,902 pmc HLTOGAannotvHg38v1,373 chainBosTau7,1089 chainBosTau7,1120 chainHg19,1086 chainHg19,1117 chainMm10,1086 chainMm10,1117 chainMonDom5,1086 chainMonDom5,1117 chainNetBosTau7,1092 chainNetBosTau7,1123 chainNetHg19,1089 chainNetHg19,1120 chainNetMm10,1089 chainNetMm10,1120 chainNetMonDom5,1089 chainNetMonDom5,1120 microsat,136 mrna,490 mrna,516 mrna,534 netBosTau7,1089 netBosTau7,1120 netHg19,1086 netHg19,1117 netMm10,1086 netMm10,1117 netMonDom5,1086 netMonDom5,1117 refSeqComposite,1748 refSeqComposite,1790 refSeqComposite,1824 simpleRepeat,96 transMapEnsemblV5,755 transMapEnsemblV5,821 transMapEstV5,724 transMapEstV5,790 transMapRefSeqV5,724 transMapRefSeqV5,790 transMapRnaV5,724 transMapRnaV5,790 transMapV5,830 transMapV5,896 uniprot,2008 xenoRefGene,318 xenoRefGene,360 xenoRefGene,394 pmc10193443 HLTOGAannotvHg38v1,374 pmc148217 microsat,137 simpleRepeat,97 pmc187518 mrna,535 refSeqComposite,1749 xenoRefGene,319 pmc208784 chainBosTau7,1090 chainHg19,1087 chainMm10,1087 chainMonDom5,1087 chainNetBosTau7,1093 chainNetHg19,1090 chainNetMm10,1090 chainNetMonDom5,1090 netBosTau7,1090 netHg19,1087 netMm10,1087 netMonDom5,1087 pmc2099585 transMapEnsemblV5,756 transMapEstV5,725 transMapRefSeqV5,725 transMapRnaV5,725 transMapV5,831 pmc2134963 transMapEnsemblV5,822 transMapEstV5,791 transMapRefSeqV5,791 transMapRnaV5,791 transMapV5,897 pmc308779 mrna,517 pmc3245120 uniprot,2009 pmc3531190 mrna,491 pmc3965018 refSeqComposite,1791 xenoRefGene,361 pmc430961 chainBosTau7,1121 chainHg19,1118 chainMm10,1118 chainMonDom5,1118 chainNetBosTau7,1124 chainNetHg19,1121 chainNetMm10,1121 chainNetMonDom5,1121 netBosTau7,1121 netHg19,1118 netMm10,1118 netMonDom5,1118 pmc539979 refSeqComposite,1825 xenoRefGene,395 pmid HLTOGAannotvHg38v1,371 augustusGene,314 augustusGene,339 chainBosTau7,1049 chainBosTau7,1087 chainBosTau7,1118 chainHg19,1046 chainHg19,1084 chainHg19,1115 chainMm10,1046 chainMm10,1084 chainMm10,1115 chainMonDom5,1046 chainMonDom5,1084 chainMonDom5,1115 chainNetBosTau7,1052 chainNetBosTau7,1090 chainNetBosTau7,1121 chainNetHg19,1049 chainNetHg19,1087 chainNetHg19,1118 chainNetMm10,1049 chainNetMm10,1087 chainNetMm10,1118 chainNetMonDom5,1049 chainNetMonDom5,1087 chainNetMonDom5,1118 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 genscan,229 microsat,134 mrna,488 mrna,514 mrna,532 nestedRepeats,360 nestedRepeats,393 nestedRepeats,415 netBosTau7,1049 netBosTau7,1087 netBosTau7,1118 netHg19,1046 netHg19,1084 netHg19,1115 netMm10,1046 netMm10,1084 netMm10,1115 netMonDom5,1046 netMonDom5,1084 netMonDom5,1115 refSeqComposite,1746 refSeqComposite,1788 refSeqComposite,1822 rmsk,383 rmsk,416 rmsk,438 simpleRepeat,94 transMapEnsemblV5,753 transMapEnsemblV5,785 transMapEnsemblV5,819 transMapEstV5,722 transMapEstV5,754 transMapEstV5,788 transMapRefSeqV5,722 transMapRefSeqV5,754 transMapRefSeqV5,788 transMapRnaV5,722 transMapRnaV5,754 transMapRnaV5,788 transMapV5,828 transMapV5,860 transMapV5,894 uniprot,2006 uniprot,2050 windowmaskerSdust,113 xenoRefGene,316 xenoRefGene,358 xenoRefGene,392 point rmsk,269 poly-a augustusGene,62 polymorphic microsat,41 simpleRepeat,46 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 position chainBosTau7,716 chainHg19,713 chainMm10,713 chainMonDom5,713 chainNetBosTau7,719 chainNetHg19,716 chainNetMm10,716 chainNetMonDom5,716 netBosTau7,716 netHg19,713 netMm10,713 netMonDom5,713 refSeqComposite,987 uniprot,610 positions HLTOGAannotvHg38v1,109 uniprot,1495 possible chainBosTau7,415 chainHg19,412 chainMm10,412 chainMonDom5,412 chainNetBosTau7,418 chainNetHg19,415 chainNetMm10,415 chainNetMonDom5,415 netBosTau7,415 netHg19,412 netMm10,412 netMonDom5,412 refSeqComposite,186 uniprot,601 possibly chainBosTau7,291 chainHg19,289 chainMm10,289 chainMonDom5,289 chainNetBosTau7,294 chainNetHg19,292 chainNetMm10,292 chainNetMonDom5,292 netBosTau7,291 netHg19,289 netMm10,289 netMonDom5,289 simpleRepeat,18 post-alignment transMapEnsemblV5,305 transMapEstV5,274 transMapRefSeqV5,274 transMapRnaV5,274 transMapV5,380 post-processing uniprot,295 potential cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 pre-mrna genscan,185 precompiled refSeqComposite,1523 transMapEnsemblV5,629 transMapEstV5,598 transMapRefSeqV5,598 transMapRnaV5,598 transMapV5,704 uniprot,1780 predicted cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 ncbiRefSeq,8 ncbiRefSeqPredicted,2 ncbiRefSeqPredicted,6 refSeqComposite,204 refSeqComposite,340 refSeqComposite,359 refSeqComposite,404 refSeqComposite,593 refSeqComposite,619 refSeqComposite,695 refSeqComposite,715 refSeqComposite,1416 refSeqComposite,1676 uniprot,48 uniprot,193 xenoRefGene,70 prediction augustusGene,321 genscan,73 genscan,211 refSeqComposite,376 refSeqComposite,604 transMapEnsemblV5,84 transMapEstV5,53 transMapRefSeqV5,53 transMapRnaV5,53 transMapV5,54 xenoRefGene,55 predictions HLTOGAannotvHg38v1,14 augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 ncbiRefSeq,18 ncbiRefSeqCurated,16 ncbiRefSeqGenomicDiff,15 ncbiRefSeqOther,18 ncbiRefSeqPredicted,14 ncbiRefSeqPsl,10 refSeqComposite,10 refSeqComposite,833 refSeqComposite,862 transMapEnsemblV5,13 transMapEstV5,11 transMapRefSeqV5,12 transMapRnaV5,12 transMapV5,10 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,10 xenoRefGene,157 xenoRefGene,186 prepared HLTOGAannotvHg38v1,318 gc5BaseBw,80 ucscToINSDC,49 ucscToRefSeq,43 uniprot,712 present HLTOGAannotvHg38v1,152 HLTOGAannotvHg38v1,172 HLTOGAannotvHg38v1,219 HLTOGAannotvHg38v1,278 cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 rmsk,44 presentation gc5BaseBw,75 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 previous refSeqComposite,1224 refSeqComposite,1340 refSeqComposite,1695 uniprot,1654 previously chainBosTau7,920 chainHg19,917 chainMm10,917 chainMonDom5,917 chainNetBosTau7,923 chainNetHg19,920 chainNetMm10,920 chainNetMonDom5,920 netBosTau7,920 netHg19,917 netMm10,917 netMonDom5,917 refSeqComposite,504 primary unipStruct,4 uniprot,360 principal gap,121 pringle transMapEnsemblV5,795 transMapEstV5,764 transMapRefSeqV5,764 transMapRnaV5,764 transMapV5,870 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 problem uniprot,1359 uniprot,1389 proc chainBosTau7,1074 chainHg19,1071 chainMm10,1071 chainMonDom5,1071 chainNetBosTau7,1077 chainNetHg19,1074 chainNetMm10,1074 chainNetMonDom5,1074 netBosTau7,1074 netHg19,1071 netMm10,1071 netMonDom5,1071 procedure uniprot,990 procedures gap,23 gold,25 process chainBosTau7,824 chainHg19,821 chainMm10,821 chainMonDom5,821 chainNetBosTau7,827 chainNetHg19,824 chainNetMm10,824 chainNetMonDom5,824 netBosTau7,824 netHg19,821 netMm10,821 netMonDom5,821 refSeqComposite,651 uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed HLTOGAannotvHg38v1,97 chainBosTau7,218 chainHg19,216 chainMm10,216 chainMonDom5,216 chainNetBosTau7,221 chainNetHg19,219 chainNetMm10,219 chainNetMonDom5,219 netBosTau7,218 netHg19,216 netMm10,216 netMonDom5,216 processing refSeqComposite,1338 produced mrna,446 refSeqComposite,384 refSeqComposite,1715 transMapEnsemblV5,22 transMapEnsemblV5,680 transMapEnsemblV5,704 transMapEstV5,20 transMapEstV5,649 transMapEstV5,673 transMapRefSeqV5,20 transMapRefSeqV5,649 transMapRefSeqV5,673 transMapRnaV5,20 transMapRnaV5,649 transMapRnaV5,673 transMapV5,19 transMapV5,142 transMapV5,755 transMapV5,779 xenoRefGene,284 produces refSeqComposite,49 products unipChain,5 program augustusGene,21 augustusGene,257 chainBosTau7,615 chainBosTau7,656 chainBosTau7,794 chainBosTau7,847 chainBosTau7,879 chainBosTau7,955 chainBosTau7,958 chainHg19,612 chainHg19,653 chainHg19,791 chainHg19,844 chainHg19,876 chainHg19,952 chainHg19,955 chainMm10,612 chainMm10,653 chainMm10,791 chainMm10,844 chainMm10,876 chainMm10,952 chainMm10,955 chainMonDom5,612 chainMonDom5,653 chainMonDom5,791 chainMonDom5,844 chainMonDom5,876 chainMonDom5,952 chainMonDom5,955 chainNetBosTau7,618 chainNetBosTau7,659 chainNetBosTau7,797 chainNetBosTau7,850 chainNetBosTau7,882 chainNetBosTau7,958 chainNetBosTau7,961 chainNetHg19,615 chainNetHg19,656 chainNetHg19,794 chainNetHg19,847 chainNetHg19,879 chainNetHg19,955 chainNetHg19,958 chainNetMm10,615 chainNetMm10,656 chainNetMm10,794 chainNetMm10,847 chainNetMm10,879 chainNetMm10,955 chainNetMm10,958 chainNetMonDom5,615 chainNetMonDom5,656 chainNetMonDom5,794 chainNetMonDom5,847 chainNetMonDom5,879 chainNetMonDom5,955 chainNetMonDom5,958 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,399 nestedRepeats,30 netBosTau7,615 netBosTau7,656 netBosTau7,794 netBosTau7,847 netBosTau7,879 netBosTau7,955 netBosTau7,958 netHg19,612 netHg19,653 netHg19,791 netHg19,844 netHg19,876 netHg19,952 netHg19,955 netMm10,612 netMm10,653 netMm10,791 netMm10,844 netMm10,876 netMm10,952 netMm10,955 netMonDom5,612 netMonDom5,653 netMonDom5,791 netMonDom5,844 netMonDom5,876 netMonDom5,952 netMonDom5,955 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 transMapEnsemblV5,315 transMapEstV5,284 transMapRefSeqV5,284 transMapRnaV5,284 transMapV5,390 uniprot,1529 programmatically refSeqComposite,1324 programs chainBosTau7,1004 chainHg19,1001 chainMm10,1001 chainMonDom5,1001 chainNetBosTau7,1007 chainNetHg19,1004 chainNetMm10,1004 chainNetMonDom5,1004 netBosTau7,1004 netHg19,1001 netMm10,1001 netMonDom5,1001 uniprot,1877 project refSeqComposite,1162 refSeqComposite,1730 xenoRefGene,301 projected uniprot,800 projection transMapEnsemblV5,57 transMapEnsemblV5,322 transMapEstV5,291 transMapRefSeqV5,291 transMapRnaV5,291 transMapV5,397 projects transMapEnsemblV5,712 transMapEstV5,681 transMapRefSeqV5,681 transMapRnaV5,681 transMapV5,787 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 pronounced uniprot,1392 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 properties refSeqComposite,722 prot.bed uniprot,1931 uniprot,1933 protein HLTOGAannotvHg38v1,270 HLTOGAannotvHg38v1,293 HLTOGAannotvHg38v1,308 HLTOGAannotvHg38v1,311 refSeqComposite,269 refSeqComposite,362 unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 protein-coding augustusGene,73 refSeqComposite,21 refSeqComposite,237 refSeqComposite,543 xenoRefGene,16 xenoRefGene,199 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins HLTOGAannotvHg38v1,163 HLTOGAannotvHg38v1,193 refSeqComposite,1811 unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 xenoRefGene,381 protocadherin refSeqComposite,417 provide uniprot,1860 provided refSeqComposite,38 refSeqComposite,69 refSeqComposite,206 refSeqComposite,445 uniprot,817 provides HLTOGAannotvHg38v1,298 gap,33 gold,35 uniprot,489 providing augustusGene,254 genscan,175 nestedRepeats,312 rmsk,335 provisional refSeqComposite,621 refSeqComposite,670 xenoRefGene,72 pruitt refSeqComposite,1750 refSeqComposite,1792 xenoRefGene,320 xenoRefGene,362 pseudogenes HLTOGAannotvHg38v1,98 chainBosTau7,219 chainBosTau7,233 chainHg19,217 chainHg19,231 chainMm10,217 chainMm10,231 chainMonDom5,217 chainMonDom5,231 chainNetBosTau7,222 chainNetBosTau7,236 chainNetHg19,220 chainNetHg19,234 chainNetMm10,220 chainNetMm10,234 chainNetMonDom5,220 chainNetMonDom5,234 netBosTau7,219 netBosTau7,233 netHg19,217 netHg19,231 netMm10,217 netMm10,231 netMonDom5,217 netMonDom5,231 refSeqComposite,409 uniprot,1184 psl mrna,38 refSeqComposite,455 refSeqComposite,1179 refSeqComposite,1421 transMapEnsemblV5,103 transMapEstV5,72 transMapRefSeqV5,72 transMapRnaV5,72 transMapV5,178 uniprot,1479 pslcdnafilter transMapEnsemblV5,354 transMapEstV5,323 transMapRefSeqV5,323 transMapRnaV5,323 transMapV5,429 pslmap transMapEnsemblV5,314 transMapEstV5,283 transMapRefSeqV5,283 transMapRnaV5,283 transMapV5,389 uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 mrna,457 refSeqComposite,1327 refSeqComposite,1630 transMapEnsemblV5,696 transMapEstV5,665 transMapRefSeqV5,665 transMapRnaV5,665 transMapV5,771 uniprot,709 publications refSeqComposite,254 refSeqComposite,424 uniprot,38 publicly nestedRepeats,275 pull-down refSeqComposite,849 xenoRefGene,173 purpose simpleRepeat,32 q uniprot,1904 uniprot,1914 q99697 uniprot,1926 qgap chainBosTau7,728 chainHg19,725 chainMm10,725 chainMonDom5,725 chainNetBosTau7,731 chainNetHg19,728 chainNetMm10,728 chainNetMonDom5,728 netBosTau7,728 netHg19,725 netMm10,725 netMonDom5,725 quality mrna,56 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 transMapEnsemblV5,563 transMapEstV5,532 transMapRefSeqV5,532 transMapRnaV5,532 transMapV5,638 query HLTOGAannotvHg38v1,70 HLTOGAannotvHg38v1,126 HLTOGAannotvHg38v1,175 HLTOGAannotvHg38v1,222 rmsk,47 rmsk,61 uniprot,1484 questions refSeqComposite,1694 uniprot,1834 quickly mrna,341 refSeqComposite,828 transMapEnsemblV5,123 transMapEstV5,92 transMapRefSeqV5,92 transMapRnaV5,92 transMapV5,198 xenoRefGene,152 quite simpleRepeat,45 quot chainBosTau7,27 chainBosTau7,29 chainBosTau7,34 chainBosTau7,36 chainBosTau7,105 chainBosTau7,107 chainBosTau7,236 chainBosTau7,238 chainBosTau7,240 chainBosTau7,242 chainBosTau7,347 chainBosTau7,349 chainBosTau7,690 chainBosTau7,692 chainHg19,26 chainHg19,28 chainHg19,33 chainHg19,35 chainHg19,103 chainHg19,105 chainHg19,234 chainHg19,236 chainHg19,238 chainHg19,240 chainHg19,344 chainHg19,346 chainHg19,687 chainHg19,689 chainMm10,26 chainMm10,28 chainMm10,33 chainMm10,35 chainMm10,103 chainMm10,105 chainMm10,234 chainMm10,236 chainMm10,238 chainMm10,240 chainMm10,344 chainMm10,346 chainMm10,687 chainMm10,689 chainMonDom5,26 chainMonDom5,28 chainMonDom5,33 chainMonDom5,35 chainMonDom5,103 chainMonDom5,105 chainMonDom5,234 chainMonDom5,236 chainMonDom5,238 chainMonDom5,240 chainMonDom5,344 chainMonDom5,346 chainMonDom5,687 chainMonDom5,689 chainNetBosTau7,30 chainNetBosTau7,32 chainNetBosTau7,37 chainNetBosTau7,39 chainNetBosTau7,108 chainNetBosTau7,110 chainNetBosTau7,239 chainNetBosTau7,241 chainNetBosTau7,243 chainNetBosTau7,245 chainNetBosTau7,350 chainNetBosTau7,352 chainNetBosTau7,693 chainNetBosTau7,695 chainNetHg19,29 chainNetHg19,31 chainNetHg19,36 chainNetHg19,38 chainNetHg19,106 chainNetHg19,108 chainNetHg19,237 chainNetHg19,239 chainNetHg19,241 chainNetHg19,243 chainNetHg19,347 chainNetHg19,349 chainNetHg19,690 chainNetHg19,692 chainNetMm10,29 chainNetMm10,31 chainNetMm10,36 chainNetMm10,38 chainNetMm10,106 chainNetMm10,108 chainNetMm10,237 chainNetMm10,239 chainNetMm10,241 chainNetMm10,243 chainNetMm10,347 chainNetMm10,349 chainNetMm10,690 chainNetMm10,692 chainNetMonDom5,29 chainNetMonDom5,31 chainNetMonDom5,36 chainNetMonDom5,38 chainNetMonDom5,106 chainNetMonDom5,108 chainNetMonDom5,237 chainNetMonDom5,239 chainNetMonDom5,241 chainNetMonDom5,243 chainNetMonDom5,347 chainNetMonDom5,349 chainNetMonDom5,690 chainNetMonDom5,692 gc5BaseBw,58 gc5BaseBw,62 mrna,187 mrna,189 mrna,238 mrna,240 mrna,254 mrna,256 mrna,290 mrna,292 mrna,307 mrna,309 netBosTau7,27 netBosTau7,29 netBosTau7,34 netBosTau7,36 netBosTau7,105 netBosTau7,107 netBosTau7,236 netBosTau7,238 netBosTau7,240 netBosTau7,242 netBosTau7,347 netBosTau7,349 netBosTau7,690 netBosTau7,692 netHg19,26 netHg19,28 netHg19,33 netHg19,35 netHg19,103 netHg19,105 netHg19,234 netHg19,236 netHg19,238 netHg19,240 netHg19,344 netHg19,346 netHg19,687 netHg19,689 netMm10,26 netMm10,28 netMm10,33 netMm10,35 netMm10,103 netMm10,105 netMm10,234 netMm10,236 netMm10,238 netMm10,240 netMm10,344 netMm10,346 netMm10,687 netMm10,689 netMonDom5,26 netMonDom5,28 netMonDom5,33 netMonDom5,35 netMonDom5,103 netMonDom5,105 netMonDom5,234 netMonDom5,236 netMonDom5,238 netMonDom5,240 netMonDom5,344 netMonDom5,346 netMonDom5,687 netMonDom5,689 refSeqComposite,508 refSeqComposite,511 refSeqComposite,1435 refSeqComposite,1437 rmsk,130 rmsk,133 rmsk,241 rmsk,242 rmsk,248 rmsk,250 rmsk,252 rmsk,254 rmsk,275 rmsk,276 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 windowmaskerSdust,82 windowmaskerSdust,84 r augustusGene,291 chainBosTau7,1054 chainBosTau7,1100 chainHg19,1051 chainHg19,1097 chainMm10,1051 chainMm10,1097 chainMonDom5,1051 chainMonDom5,1097 chainNetBosTau7,1057 chainNetBosTau7,1103 chainNetHg19,1054 chainNetHg19,1100 chainNetMm10,1054 chainNetMm10,1100 chainNetMonDom5,1054 chainNetMonDom5,1100 nestedRepeats,327 netBosTau7,1054 netBosTau7,1100 netHg19,1051 netHg19,1097 netMm10,1051 netMm10,1097 netMonDom5,1051 netMonDom5,1097 rmsk,350 transMapEnsemblV5,762 transMapEstV5,731 transMapRefSeqV5,731 transMapRnaV5,731 transMapV5,837 windowmaskerSdust,99 r.s chainBosTau7,1019 chainHg19,1016 chainMm10,1016 chainMonDom5,1016 chainNetBosTau7,1022 chainNetHg19,1019 chainNetMm10,1019 chainNetMonDom5,1019 netBosTau7,1019 netHg19,1016 netMm10,1016 netMonDom5,1016 random augustusGene,119 raney uniprot,1960 range gap,136 nestedRepeats,227 nestedRepeats,236 refSeqComposite,988 transMapEnsemblV5,658 transMapEstV5,627 transMapRefSeqV5,627 transMapRnaV5,627 transMapV5,733 uniprot,1809 ranked chainBosTau7,791 chainHg19,788 chainMm10,788 chainMonDom5,788 chainNetBosTau7,794 chainNetHg19,791 chainNetMm10,791 chainNetMonDom5,791 netBosTau7,791 netHg19,788 netMm10,788 netMonDom5,788 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 ratio cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 raw refSeqComposite,1293 transMapEnsemblV5,521 transMapEstV5,490 transMapRefSeqV5,490 transMapRnaV5,490 transMapV5,596 uniprot,1708 rc chainBosTau7,1102 chainHg19,1099 chainMm10,1099 chainMonDom5,1099 chainNetBosTau7,1105 chainNetHg19,1102 chainNetMm10,1102 chainNetMonDom5,1102 netBosTau7,1102 netHg19,1099 netMm10,1099 netMonDom5,1099 rmsk,200 read gap,95 refSeqComposite,1462 realigning refSeqComposite,51 realignment refSeqComposite,59 refSeqComposite,488 rearrangement chainBosTau7,297 chainBosTau7,501 chainBosTau7,1067 chainHg19,295 chainHg19,498 chainHg19,1064 chainMm10,295 chainMm10,498 chainMm10,1064 chainMonDom5,295 chainMonDom5,498 chainMonDom5,1064 chainNetBosTau7,300 chainNetBosTau7,504 chainNetBosTau7,1070 chainNetHg19,298 chainNetHg19,501 chainNetHg19,1067 chainNetMm10,298 chainNetMm10,501 chainNetMm10,1067 chainNetMonDom5,298 chainNetMonDom5,501 chainNetMonDom5,1067 netBosTau7,297 netBosTau7,501 netBosTau7,1067 netHg19,295 netHg19,498 netHg19,1064 netMm10,295 netMm10,498 netMm10,1064 netMonDom5,295 netMonDom5,498 netMonDom5,1064 rearrangements nestedRepeats,99 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 recently uniprot,1186 reciprocal transMapEnsemblV5,241 transMapEstV5,210 transMapRefSeqV5,210 transMapRnaV5,210 transMapV5,66 transMapV5,316 record refSeqComposite,616 refSeqComposite,637 refSeqComposite,673 refSeqComposite,698 refSeqComposite,713 uniprot,496 xenoRefGene,67 records refSeqComposite,128 refSeqComposite,662 refer genscan,144 refSeqComposite,1687 uniprot,1827 reference HLTOGAannotvHg38v1,10 HLTOGAannotvHg38v1,51 HLTOGAannotvHg38v1,68 HLTOGAannotvHg38v1,117 ncbiRefSeqGenomicDiff,10 refSeqComposite,30 refSeqComposite,111 refSeqComposite,466 refSeqComposite,880 refSeqComposite,1090 refSeqComposite,1777 refSeqComposite,1799 ucscToRefSeq,23 uniprot,1378 uniprot,1422 xenoRefGene,31 xenoRefGene,347 xenoRefGene,369 references HLTOGAannotvHg38v1,324 augustusGene,285 chainBosTau7,1017 chainHg19,1014 chainMm10,1014 chainMonDom5,1014 chainNetBosTau7,1020 chainNetHg19,1017 chainNetMm10,1017 chainNetMonDom5,1017 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 genscan,152 genscan,179 microsat,113 mrna,463 nestedRepeats,66 nestedRepeats,323 netBosTau7,1017 netHg19,1014 netMm10,1014 netMonDom5,1014 refSeqComposite,1731 rmsk,102 rmsk,346 simpleRepeat,73 transMapEnsemblV5,713 transMapEstV5,682 transMapRefSeqV5,682 transMapRnaV5,682 transMapV5,788 uniprot,1984 windowmaskerSdust,89 xenoRefGene,302 refgene refSeqComposite,1420 transMapEnsemblV5,595 transMapEstV5,564 transMapRefSeqV5,2 transMapRefSeqV5,564 transMapRnaV5,564 transMapV5,670 reflects rmsk,213 refseq ncbiRefSeq,1 ncbiRefSeq,4 ncbiRefSeqCurated,1 ncbiRefSeqCurated,4 ncbiRefSeqGenomicDiff,1 ncbiRefSeqGenomicDiff,6 ncbiRefSeqOther,1 ncbiRefSeqOther,4 ncbiRefSeqPredicted,1 ncbiRefSeqPredicted,4 ncbiRefSeqPsl,1 ncbiRefSeqPsl,3 refSeqComposite,2 refSeqComposite,3 refSeqComposite,14 refSeqComposite,33 refSeqComposite,40 refSeqComposite,45 refSeqComposite,53 refSeqComposite,84 refSeqComposite,87 refSeqComposite,113 refSeqComposite,127 refSeqComposite,189 refSeqComposite,196 refSeqComposite,198 refSeqComposite,208 refSeqComposite,209 refSeqComposite,214 refSeqComposite,314 refSeqComposite,335 refSeqComposite,339 refSeqComposite,344 refSeqComposite,378 refSeqComposite,387 refSeqComposite,399 refSeqComposite,403 refSeqComposite,433 refSeqComposite,438 refSeqComposite,448 refSeqComposite,457 refSeqComposite,470 refSeqComposite,481 refSeqComposite,509 refSeqComposite,513 refSeqComposite,522 refSeqComposite,530 refSeqComposite,547 refSeqComposite,549 refSeqComposite,555 refSeqComposite,582 refSeqComposite,588 refSeqComposite,590 refSeqComposite,592 refSeqComposite,596 refSeqComposite,615 refSeqComposite,629 refSeqComposite,636 refSeqComposite,661 refSeqComposite,672 refSeqComposite,697 refSeqComposite,712 refSeqComposite,869 refSeqComposite,885 refSeqComposite,1096 refSeqComposite,1116 refSeqComposite,1131 refSeqComposite,1145 refSeqComposite,1148 refSeqComposite,1161 refSeqComposite,1168 refSeqComposite,1199 refSeqComposite,1209 refSeqComposite,1214 refSeqComposite,1225 refSeqComposite,1228 refSeqComposite,1357 refSeqComposite,1371 refSeqComposite,1374 refSeqComposite,1409 refSeqComposite,1412 refSeqComposite,1415 refSeqComposite,1419 refSeqComposite,1423 refSeqComposite,1573 refSeqComposite,1670 refSeqComposite,1672 refSeqComposite,1675 refSeqComposite,1729 refSeqComposite,1772 refSeqComposite,1801 transMapEnsemblV5,170 transMapEnsemblV5,707 transMapEstV5,139 transMapEstV5,676 transMapRefSeqV5,4 transMapRefSeqV5,17 transMapRefSeqV5,139 transMapRefSeqV5,676 transMapRnaV5,139 transMapRnaV5,676 transMapV5,245 transMapV5,782 ucscToRefSeq,1 ucscToRefSeq,3 ucscToRefSeq,26 uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,300 xenoRefGene,342 xenoRefGene,371 refseqdiffs refSeqComposite,1476 refseqother refSeqComposite,1474 regeneron uniprot,1968 region chainBosTau7,203 chainBosTau7,404 chainHg19,201 chainHg19,401 chainMm10,201 chainMm10,401 chainMonDom5,201 chainMonDom5,401 chainNetBosTau7,206 chainNetBosTau7,407 chainNetHg19,204 chainNetHg19,404 chainNetMm10,204 chainNetMm10,404 chainNetMonDom5,204 chainNetMonDom5,404 cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 netBosTau7,203 netBosTau7,404 netHg19,201 netHg19,401 netMm10,201 netMm10,401 netMonDom5,201 netMonDom5,401 refSeqComposite,991 refSeqComposite,1543 uniprot,312 regions HLTOGAannotvHg38v1,85 augustusGene,76 chainBosTau7,17 chainBosTau7,138 chainBosTau7,290 chainHg19,16 chainHg19,136 chainHg19,288 chainMm10,16 chainMm10,136 chainMm10,288 chainMonDom5,16 chainMonDom5,136 chainMonDom5,288 chainNetBosTau7,20 chainNetBosTau7,141 chainNetBosTau7,293 chainNetHg19,19 chainNetHg19,139 chainNetHg19,291 chainNetMm10,19 chainNetMm10,139 chainNetMm10,291 chainNetMonDom5,19 chainNetMonDom5,139 chainNetMonDom5,291 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 genscan,48 microsat,14 netBosTau7,17 netBosTau7,138 netBosTau7,290 netHg19,16 netHg19,136 netHg19,288 netMm10,16 netMm10,136 netMm10,288 netMonDom5,16 netMonDom5,136 netMonDom5,288 refSeqComposite,1496 simpleRepeat,39 transMapEnsemblV5,303 transMapEnsemblV5,604 transMapEstV5,272 transMapEstV5,573 transMapRefSeqV5,272 transMapRefSeqV5,573 transMapRnaV5,272 transMapRnaV5,573 transMapV5,378 transMapV5,679 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 regulation cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 related augustusGene,242 transMapV5,75 uniprot,551 relationship chainBosTau7,857 chainHg19,854 chainMm10,854 chainMonDom5,854 chainNetBosTau7,860 chainNetHg19,857 chainNetMm10,857 chainNetMonDom5,857 netBosTau7,857 netHg19,854 netMm10,854 netMonDom5,854 relative chainBosTau7,873 chainHg19,870 chainMm10,870 chainMonDom5,870 chainNetBosTau7,876 chainNetHg19,873 chainNetMm10,873 chainNetMonDom5,873 gap,79 gold,110 netBosTau7,873 netHg19,870 netMm10,870 netMonDom5,870 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 release refSeqComposite,1118 uniprot,1589 releases uniprot,1561 uniprot,1686 relevant mrna,106 uniprot,681 relies HLTOGAannotvHg38v1,78 remain uniprot,1189 remaining chainBosTau7,696 chainHg19,693 chainMm10,693 chainMonDom5,693 chainNetBosTau7,699 chainNetHg19,696 chainNetMm10,696 chainNetMonDom5,696 netBosTau7,696 netHg19,693 netMm10,693 netMonDom5,693 removed chainBosTau7,586 chainHg19,583 chainMm10,583 chainMonDom5,583 chainNetBosTau7,589 chainNetHg19,586 chainNetMm10,586 chainNetMonDom5,586 cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 netBosTau7,586 netHg19,583 netMm10,583 netMonDom5,583 rmsk,279 uniprot,597 uniprot,1150 removes transMapEnsemblV5,308 transMapEstV5,277 transMapRefSeqV5,277 transMapRnaV5,277 transMapV5,383 reorganizing uniprot,1987 repbase nestedRepeats,45 nestedRepeats,57 nestedRepeats,335 nestedRepeats,342 rmsk,81 rmsk,93 rmsk,114 rmsk,358 rmsk,365 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 microsat,83 nestedRepeats,85 nestedRepeats,122 nestedRepeats,135 nestedRepeats,257 nestedRepeats,316 rmsk,168 rmsk,175 rmsk,227 rmsk,339 simpleRepeat,47 repeated uniprot,386 uniprot,390 repeating rmsk,2 repeatmasker chainBosTau7,954 chainHg19,951 chainMm10,951 chainMonDom5,951 chainNetBosTau7,957 chainNetHg19,954 chainNetMm10,954 chainNetMonDom5,954 nestedRepeats,9 nestedRepeats,29 nestedRepeats,73 nestedRepeats,77 nestedRepeats,109 nestedRepeats,254 nestedRepeats,285 nestedRepeats,330 netBosTau7,954 netHg19,951 netMm10,951 netMonDom5,951 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,292 rmsk,353 repeats chainBosTau7,946 chainHg19,943 chainMm10,943 chainMonDom5,943 chainNetBosTau7,949 chainNetHg19,946 chainNetMm10,946 chainNetMonDom5,946 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 nestedRepeats,6 nestedRepeats,13 nestedRepeats,22 nestedRepeats,37 nestedRepeats,49 nestedRepeats,95 nestedRepeats,366 nestedRepeats,374 nestedRepeats,401 netBosTau7,946 netHg19,943 netMm10,943 netMonDom5,943 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,152 rmsk,179 rmsk,183 rmsk,185 rmsk,187 rmsk,196 rmsk,303 rmsk,310 rmsk,389 rmsk,397 rmsk,424 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 repetitive nestedRepeats,351 refSeqComposite,981 refSeqComposite,1009 rmsk,374 uniprot,1400 reporting refSeqComposite,1093 represent chainBosTau7,136 chainBosTau7,164 chainBosTau7,451 chainBosTau7,456 chainHg19,134 chainHg19,162 chainHg19,448 chainHg19,453 chainMm10,134 chainMm10,162 chainMm10,448 chainMm10,453 chainMonDom5,134 chainMonDom5,162 chainMonDom5,448 chainMonDom5,453 chainNetBosTau7,139 chainNetBosTau7,167 chainNetBosTau7,454 chainNetBosTau7,459 chainNetHg19,137 chainNetHg19,165 chainNetHg19,451 chainNetHg19,456 chainNetMm10,137 chainNetMm10,165 chainNetMm10,451 chainNetMm10,456 chainNetMonDom5,137 chainNetMonDom5,165 chainNetMonDom5,451 chainNetMonDom5,456 netBosTau7,136 netBosTau7,164 netBosTau7,451 netBosTau7,456 netHg19,134 netHg19,162 netHg19,448 netHg19,453 netMm10,134 netMm10,162 netMm10,448 netMm10,453 netMonDom5,134 netMonDom5,162 netMonDom5,448 netMonDom5,453 representative refSeqComposite,540 represented gap,70 rmsk,49 representing gap,113 reproducibility uniprot,1645 required refSeqComposite,910 refSeqComposite,924 requirements refSeqComposite,394 res chainBosTau7,1112 chainHg19,1109 chainMm10,1109 chainMonDom5,1109 chainNetBosTau7,1115 chainNetHg19,1112 chainNetMm10,1112 chainNetMonDom5,1112 microsat,127 mrna,481 mrna,506 mrna,526 netBosTau7,1112 netHg19,1109 netMm10,1109 netMonDom5,1109 refSeqComposite,1740 refSeqComposite,1781 refSeqComposite,1814 simpleRepeat,87 transMapEnsemblV5,747 transMapEstV5,716 transMapRefSeqV5,716 transMapRnaV5,716 transMapV5,822 uniprot,1999 xenoRefGene,310 xenoRefGene,351 xenoRefGene,384 research nestedRepeats,54 refSeqComposite,1104 rmsk,90 residues uniprot,344 resolve uniprot,1357 resolved uniprot,1284 resource uniprot,1995 uniprot,2033 rest cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 refSeqComposite,1311 restricted refSeqComposite,581 result chainBosTau7,177 chainHg19,175 chainMm10,175 chainMonDom5,175 chainNetBosTau7,180 chainNetHg19,178 chainNetMm10,178 chainNetMonDom5,178 cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 netBosTau7,177 netHg19,175 netMm10,175 netMonDom5,175 refSeqComposite,61 transMapEnsemblV5,507 transMapEstV5,476 transMapRefSeqV5,476 transMapRnaV5,476 transMapV5,582 uniprot,798 uniprot,1065 uniprot,1170 resulting chainBosTau7,605 chainHg19,602 chainMm10,602 chainMonDom5,602 chainNetBosTau7,608 chainNetHg19,605 chainNetMm10,605 chainNetMonDom5,605 netBosTau7,605 netHg19,602 netMm10,602 netMonDom5,602 refSeqComposite,285 transMapEnsemblV5,81 transMapEnsemblV5,337 transMapEnsemblV5,349 transMapEnsemblV5,494 transMapEstV5,50 transMapEstV5,306 transMapEstV5,318 transMapEstV5,463 transMapRefSeqV5,50 transMapRefSeqV5,306 transMapRefSeqV5,318 transMapRefSeqV5,463 transMapRnaV5,50 transMapRnaV5,306 transMapRnaV5,318 transMapRnaV5,463 transMapV5,51 transMapV5,412 transMapV5,424 transMapV5,569 uniprot,874 uniprot,1137 uniprot,1308 results refSeqComposite,1102 uniprot,1463 uniprot,1649 retained uniprot,795 retroposons rmsk,173 review refSeqComposite,613 refSeqComposite,633 refSeqComposite,650 refSeqComposite,681 refSeqComposite,706 xenoRefGene,64 reviewed refSeqComposite,624 refSeqComposite,634 refSeqComposite,640 xenoRefGene,74 reviews refSeqComposite,259 rhinoceros chainBosTau7,75 chainBosTau7,102 chainBosTau7,160 chainBosTau7,207 chainBosTau7,274 chainBosTau7,282 chainBosTau7,583 chainBosTau7,636 chainHg19,73 chainHg19,100 chainHg19,158 chainHg19,205 chainHg19,272 chainHg19,280 chainHg19,580 chainHg19,633 chainMm10,73 chainMm10,100 chainMm10,158 chainMm10,205 chainMm10,272 chainMm10,280 chainMm10,580 chainMm10,633 chainMonDom5,73 chainMonDom5,100 chainMonDom5,158 chainMonDom5,205 chainMonDom5,272 chainMonDom5,280 chainMonDom5,580 chainMonDom5,633 chainNetBosTau7,78 chainNetBosTau7,105 chainNetBosTau7,163 chainNetBosTau7,210 chainNetBosTau7,277 chainNetBosTau7,285 chainNetBosTau7,586 chainNetBosTau7,639 chainNetHg19,76 chainNetHg19,103 chainNetHg19,161 chainNetHg19,208 chainNetHg19,275 chainNetHg19,283 chainNetHg19,583 chainNetHg19,636 chainNetMm10,76 chainNetMm10,103 chainNetMm10,161 chainNetMm10,208 chainNetMm10,275 chainNetMm10,283 chainNetMm10,583 chainNetMm10,636 chainNetMonDom5,76 chainNetMonDom5,103 chainNetMonDom5,161 chainNetMonDom5,208 chainNetMonDom5,275 chainNetMonDom5,283 chainNetMonDom5,583 chainNetMonDom5,636 gap,18 gold,20 mrna,2 mrna,5 mrna,20 mrna,389 netBosTau7,75 netBosTau7,102 netBosTau7,160 netBosTau7,207 netBosTau7,274 netBosTau7,282 netBosTau7,583 netBosTau7,636 netHg19,73 netHg19,100 netHg19,158 netHg19,205 netHg19,272 netHg19,280 netHg19,580 netHg19,633 netMm10,73 netMm10,100 netMm10,158 netMm10,205 netMm10,272 netMm10,280 netMm10,580 netMm10,633 netMonDom5,73 netMonDom5,100 netMonDom5,158 netMonDom5,205 netMonDom5,272 netMonDom5,280 netMonDom5,580 netMonDom5,633 refSeqComposite,20 refSeqComposite,443 refSeqComposite,465 refSeqComposite,499 refSeqComposite,1235 transMapEnsemblV5,91 transMapEnsemblV5,204 transMapEnsemblV5,335 transMapEstV5,60 transMapEstV5,173 transMapEstV5,304 transMapRefSeqV5,60 transMapRefSeqV5,173 transMapRefSeqV5,304 transMapRnaV5,60 transMapRnaV5,173 transMapRnaV5,304 transMapV5,61 transMapV5,279 transMapV5,410 xenoRefGene,4 xenoRefGene,25 xenoRefGene,225 riestra uniprot,1972 right refSeqComposite,975 rightmost refSeqComposite,1017 rna refSeqComposite,29 refSeqComposite,1089 refSeqComposite,1149 refSeqComposite,1210 refSeqComposite,1252 refSeqComposite,1660 rmsk,186 rmsk,189 transMapEnsemblV5,598 transMapEstV5,567 transMapRefSeqV5,567 transMapRnaV5,2 transMapRnaV5,5 transMapRnaV5,567 transMapV5,673 xenoRefGene,30 xenoRefGene,242 xenoRefGene,288 rna-seq refSeqComposite,75 refSeqComposite,366 rnas ncbiRefSeqPsl,6 refSeqComposite,54 refSeqComposite,439 refSeqComposite,490 refSeqComposite,1229 xenoRefGene,219 robert chainBosTau7,994 chainHg19,991 chainMm10,991 chainMonDom5,991 chainNetBosTau7,997 chainNetHg19,994 chainNetMm10,994 chainNetMonDom5,994 nestedRepeats,307 netBosTau7,994 netHg19,991 netMm10,991 netMonDom5,991 rmsk,330 role uniprot,309 rolling rmsk,201 ross chainBosTau7,943 chainHg19,940 chainMm10,940 chainMonDom5,940 chainNetBosTau7,946 chainNetHg19,943 chainNetMm10,943 chainNetMonDom5,943 netBosTau7,943 netHg19,940 netMm10,940 netMonDom5,940 row nestedRepeats,179 rpts nestedRepeats,2 rrna rmsk,191 run chainBosTau7,659 chainHg19,656 chainMm10,656 chainMonDom5,656 chainNetBosTau7,662 chainNetHg19,659 chainNetMm10,659 chainNetMonDom5,659 netBosTau7,659 netHg19,656 netMm10,656 netMonDom5,656 refSeqComposite,1610 windowmaskerSdust,53 s augustusGene,104 augustusGene,221 augustusGene,319 chainBosTau7,1062 chainBosTau7,1079 chainBosTau7,1092 chainHg19,1059 chainHg19,1076 chainHg19,1089 chainMm10,1059 chainMm10,1076 chainMm10,1089 chainMonDom5,1059 chainMonDom5,1076 chainMonDom5,1089 chainNetBosTau7,1065 chainNetBosTau7,1082 chainNetBosTau7,1095 chainNetHg19,1062 chainNetHg19,1079 chainNetHg19,1092 chainNetMm10,1062 chainNetMm10,1079 chainNetMm10,1092 chainNetMonDom5,1062 chainNetMonDom5,1079 chainNetMonDom5,1092 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 genscan,190 genscan,194 genscan,210 nestedRepeats,286 netBosTau7,1062 netBosTau7,1079 netBosTau7,1092 netHg19,1059 netHg19,1076 netHg19,1089 netMm10,1059 netMm10,1076 netMm10,1089 netMonDom5,1059 netMonDom5,1076 netMonDom5,1089 refSeqComposite,106 refSeqComposite,319 refSeqComposite,468 refSeqComposite,487 refSeqComposite,1123 refSeqComposite,1208 rmsk,18 rmsk,293 transMapEnsemblV5,732 transMapEstV5,701 transMapRefSeqV5,701 transMapRnaV5,701 transMapV5,807 uniprot,751 uniprot,774 saccharomyces augustusGene,223 safely refSeqComposite,1455 salzberg genscan,189 same chainBosTau7,530 chainBosTau7,545 chainHg19,527 chainHg19,542 chainMm10,527 chainMm10,542 chainMonDom5,527 chainMonDom5,542 chainNetBosTau7,533 chainNetBosTau7,548 chainNetHg19,530 chainNetHg19,545 chainNetMm10,530 chainNetMm10,545 chainNetMonDom5,530 chainNetMonDom5,545 nestedRepeats,143 netBosTau7,530 netBosTau7,545 netHg19,527 netHg19,542 netMm10,527 netMm10,542 netMonDom5,527 netMonDom5,542 refSeqComposite,1221 uniprot,608 uniprot,612 uniprot,641 uniprot,1173 sample augustusGene,133 sampling augustusGene,129 sanborn transMapEnsemblV5,789 transMapEstV5,758 transMapRefSeqV5,758 transMapRnaV5,758 transMapV5,864 santa chainBosTau7,967 chainBosTau7,1012 chainHg19,964 chainHg19,1009 chainMm10,964 chainMm10,1009 chainMonDom5,964 chainMonDom5,1009 chainNetBosTau7,970 chainNetBosTau7,1015 chainNetHg19,967 chainNetHg19,1012 chainNetMm10,967 chainNetMm10,1012 chainNetMonDom5,967 chainNetMonDom5,1012 netBosTau7,967 netBosTau7,1012 netHg19,964 netHg19,1009 netMm10,964 netMm10,1009 netMonDom5,964 netMonDom5,1009 satellite rmsk,184 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 sayers mrna,476 scaffold gap,125 gold,81 gold,119 scaffolds gap,128 scale HLTOGAannotvHg38v1,363 sch windowmaskerSdust,94 scheib uniprot,2012 schwartz chainBosTau7,934 chainBosTau7,1091 chainHg19,931 chainHg19,1088 chainMm10,931 chainMm10,1088 chainMonDom5,931 chainMonDom5,1088 chainNetBosTau7,937 chainNetBosTau7,1094 chainNetHg19,934 chainNetHg19,1091 chainNetMm10,934 chainNetMm10,1091 chainNetMonDom5,934 chainNetMonDom5,1091 netBosTau7,934 netBosTau7,1091 netHg19,931 netHg19,1088 netMm10,931 netMm10,1088 netMonDom5,931 netMonDom5,1088 sci chainBosTau7,1077 chainHg19,1074 chainMm10,1074 chainMonDom5,1074 chainNetBosTau7,1080 chainNetHg19,1077 chainNetMm10,1077 chainNetMonDom5,1077 netBosTau7,1077 netHg19,1074 netMm10,1074 netMonDom5,1074 science HLTOGAannotvHg38v1,364 genscan,203 scientific refSeqComposite,282 uniprot,37 scientists mrna,461 refSeqComposite,1722 transMapEnsemblV5,700 transMapEstV5,669 transMapRefSeqV5,669 transMapRnaV5,669 transMapV5,775 xenoRefGene,293 score chainBosTau7,688 chainHg19,685 chainMm10,685 chainMonDom5,685 chainNetBosTau7,691 chainNetHg19,688 chainNetMm10,688 chainNetMonDom5,688 nestedRepeats,188 nestedRepeats,216 nestedRepeats,223 netBosTau7,688 netHg19,685 netMm10,685 netMonDom5,685 uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scores uniprot,1085 scoring chainBosTau7,80 chainBosTau7,90 chainBosTau7,667 chainBosTau7,684 chainBosTau7,1039 chainHg19,78 chainHg19,88 chainHg19,664 chainHg19,681 chainHg19,1036 chainMm10,78 chainMm10,88 chainMm10,664 chainMm10,681 chainMm10,1036 chainMonDom5,78 chainMonDom5,88 chainMonDom5,664 chainMonDom5,681 chainMonDom5,1036 chainNetBosTau7,83 chainNetBosTau7,93 chainNetBosTau7,670 chainNetBosTau7,687 chainNetBosTau7,1042 chainNetHg19,81 chainNetHg19,91 chainNetHg19,667 chainNetHg19,684 chainNetHg19,1039 chainNetMm10,81 chainNetMm10,91 chainNetMm10,667 chainNetMm10,684 chainNetMm10,1039 chainNetMonDom5,81 chainNetMonDom5,91 chainNetMonDom5,667 chainNetMonDom5,684 chainNetMonDom5,1039 cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 netBosTau7,80 netBosTau7,90 netBosTau7,667 netBosTau7,684 netBosTau7,1039 netHg19,78 netHg19,88 netHg19,664 netHg19,681 netHg19,1036 netMm10,78 netMm10,88 netMm10,664 netMm10,681 netMm10,1036 netMonDom5,78 netMonDom5,88 netMonDom5,664 netMonDom5,681 netMonDom5,1036 scott chainBosTau7,933 chainHg19,930 chainMm10,930 chainMonDom5,930 chainNetBosTau7,936 chainNetHg19,933 chainNetMm10,933 chainNetMonDom5,933 netBosTau7,933 netHg19,930 netMm10,930 netMonDom5,930 screens nestedRepeats,32 rmsk,22 script uniprot,1549 scrna rmsk,193 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 search transMapEnsemblV5,801 transMapEstV5,770 transMapRefSeqV5,770 transMapRnaV5,770 transMapV5,876 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 searls genscan,191 secondary unipStruct,5 uniprot,361 secreted uniprot,247 section genscan,153 nestedRepeats,67 refSeqComposite,92 refSeqComposite,1655 rmsk,103 uniprot,897 sections chainBosTau7,814 chainHg19,811 chainMm10,811 chainMonDom5,811 chainNetBosTau7,817 chainNetHg19,814 chainNetMm10,814 chainNetMonDom5,814 netBosTau7,814 netHg19,811 netMm10,811 netMonDom5,811 see augustusGene,42 genscan,57 microsat,101 nestedRepeats,296 nestedRepeats,370 refSeqComposite,89 refSeqComposite,137 refSeqComposite,337 refSeqComposite,545 rmsk,319 rmsk,393 simpleRepeat,63 transMapEnsemblV5,231 transMapEnsemblV5,574 transMapEstV5,200 transMapEstV5,543 transMapRefSeqV5,200 transMapRefSeqV5,543 transMapRnaV5,200 transMapRnaV5,543 transMapV5,306 transMapV5,649 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,209 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 select genscan,90 refSeqComposite,514 refSeqComposite,531 refSeqComposite,535 refSeqComposite,548 refSeqComposite,838 xenoRefGene,162 selected mrna,242 mrna,258 mrna,311 refSeqComposite,160 transMapEnsemblV5,214 transMapEnsemblV5,251 transMapEnsemblV5,262 transMapEnsemblV5,330 transMapEstV5,183 transMapEstV5,220 transMapEstV5,231 transMapEstV5,299 transMapRefSeqV5,183 transMapRefSeqV5,220 transMapRefSeqV5,231 transMapRefSeqV5,299 transMapRnaV5,183 transMapRnaV5,220 transMapRnaV5,231 transMapRnaV5,299 transMapV5,289 transMapV5,326 transMapV5,337 transMapV5,405 uniprot,986 selecting microsat,60 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 semi-markov augustusGene,117 sensitivity transMapV5,148 sep chainBosTau7,1082 chainHg19,1079 chainMm10,1079 chainMonDom5,1079 chainNetBosTau7,1085 chainNetHg19,1082 chainNetMm10,1082 chainNetMonDom5,1082 nestedRepeats,356 netBosTau7,1082 netHg19,1079 netMm10,1079 netMonDom5,1079 rmsk,379 separated mrna,213 seq unipConflict,1 sequence HLTOGAannotvHg38v1,150 HLTOGAannotvHg38v1,309 augustusGene,32 augustusGene,70 chainBosTau7,171 chainBosTau7,300 chainBosTau7,1042 chainHg19,169 chainHg19,298 chainHg19,1039 chainMm10,169 chainMm10,298 chainMm10,1039 chainMonDom5,169 chainMonDom5,298 chainMonDom5,1039 chainNetBosTau7,174 chainNetBosTau7,303 chainNetBosTau7,1045 chainNetHg19,172 chainNetHg19,301 chainNetHg19,1042 chainNetMm10,172 chainNetMm10,301 chainNetMm10,1042 chainNetMonDom5,172 chainNetMonDom5,301 chainNetMonDom5,1042 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 gap,55 gold,54 gold,158 mrna,347 mrna,438 mrna,451 mrna,458 netBosTau7,171 netBosTau7,300 netBosTau7,1042 netHg19,169 netHg19,298 netHg19,1039 netMm10,169 netMm10,298 netMm10,1039 netMonDom5,169 netMonDom5,298 netMonDom5,1039 refSeqComposite,655 refSeqComposite,666 refSeqComposite,882 refSeqComposite,982 refSeqComposite,1010 refSeqComposite,1037 refSeqComposite,1049 refSeqComposite,1082 refSeqComposite,1086 refSeqComposite,1091 refSeqComposite,1287 refSeqComposite,1800 refSeqComposite,1805 rmsk,48 rmsk,62 transMapEnsemblV5,129 transMapEnsemblV5,690 transMapEnsemblV5,697 transMapEstV5,98 transMapEstV5,659 transMapEstV5,666 transMapRefSeqV5,98 transMapRefSeqV5,659 transMapRefSeqV5,666 transMapRnaV5,98 transMapRnaV5,659 transMapRnaV5,666 transMapV5,204 transMapV5,765 transMapV5,772 ucscToINSDC,7 ucscToINSDC,29 ucscToRefSeq,24 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 windowmaskerSdust,17 xenoRefGene,277 xenoRefGene,289 xenoRefGene,370 xenoRefGene,375 sequence-to-gene refSeqComposite,684 sequenced windowmaskerSdust,104 sequences gold,13 microsat,26 microsat,124 nestedRepeats,34 nestedRepeats,42 refSeqComposite,31 refSeqComposite,112 refSeqComposite,270 refSeqComposite,286 refSeqComposite,887 refSeqComposite,1097 refSeqComposite,1661 refSeqComposite,1778 rmsk,24 rmsk,32 simpleRepeat,84 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoRefGene,32 xenoRefGene,348 sequencing chainBosTau7,896 chainHg19,893 chainMm10,893 chainMonDom5,893 chainNetBosTau7,899 chainNetHg19,896 chainNetMm10,896 chainNetMonDom5,896 cytoBandIdeo,9 gap,6 gc5BaseBw,10 gold,7 netBosTau7,896 netHg19,893 netMm10,893 netMonDom5,893 ucscToINSDC,12 ucscToRefSeq,7 server refSeqComposite,1329 refSeqComposite,1335 refSeqComposite,1351 refSeqComposite,1490 refSeqComposite,1605 refSeqComposite,1632 refSeqComposite,1684 refSeqComposite,1710 transMapEnsemblV5,561 transMapEstV5,530 transMapRefSeqV5,530 transMapRnaV5,530 transMapV5,636 uniprot,1699 uniprot,1745 servers cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 set refSeqComposite,161 refSeqComposite,1500 refSeqComposite,1637 refSeqComposite,1700 transMapEnsemblV5,281 transMapEstV5,250 transMapRefSeqV5,250 transMapRnaV5,250 transMapV5,356 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 refSeqComposite,155 setting refSeqComposite,1041 refSeqComposite,1068 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 refSeqComposite,746 several HLTOGAannotvHg38v1,274 mrna,365 transMapEnsemblV5,138 transMapEstV5,107 transMapRefSeqV5,107 transMapRnaV5,107 transMapV5,213 shade nestedRepeats,194 shaded mrna,51 nestedRepeats,182 shades nestedRepeats,202 shading nestedRepeats,240 refSeqComposite,608 rmsk,208 rmsk,239 xenoRefGene,59 sharma HLTOGAannotvHg38v1,342 shift refSeqComposite,962 shifted refSeqComposite,971 refSeqComposite,1018 short refSeqComposite,929 rmsk,153 uniprot,460 uniprot,978 shortgap refSeqComposite,965 shotgun gold,152 should mrna,278 show refSeqComposite,157 refSeqComposite,791 refSeqComposite,906 refSeqComposite,920 uniprot,80 uniprot,227 uniprot,538 xenoRefGene,125 showing refSeqComposite,960 shown HLTOGAannotvHg38v1,136 chainBosTau7,42 chainBosTau7,55 chainHg19,41 chainHg19,54 chainMm10,41 chainMm10,54 chainMonDom5,41 chainMonDom5,54 chainNetBosTau7,45 chainNetBosTau7,58 chainNetHg19,44 chainNetHg19,57 chainNetMm10,44 chainNetMm10,57 chainNetMonDom5,44 chainNetMonDom5,57 gold,102 microsat,48 mrna,96 netBosTau7,42 netBosTau7,55 netHg19,41 netHg19,54 netMm10,41 netMm10,54 netMonDom5,41 netMonDom5,54 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 shows augustusGene,15 augustusGene,108 chainBosTau7,16 chainBosTau7,63 chainBosTau7,269 chainHg19,15 chainHg19,62 chainHg19,267 chainMm10,15 chainMm10,62 chainMm10,267 chainMonDom5,15 chainMonDom5,62 chainMonDom5,267 chainNetBosTau7,19 chainNetBosTau7,66 chainNetBosTau7,272 chainNetHg19,18 chainNetHg19,65 chainNetHg19,270 chainNetMm10,18 chainNetMm10,65 chainNetMm10,270 chainNetMonDom5,18 chainNetMonDom5,65 chainNetMonDom5,270 gap,10 gc5BaseBw,16 genscan,13 gold,11 mrna,16 nestedRepeats,17 nestedRepeats,81 netBosTau7,16 netBosTau7,63 netBosTau7,269 netHg19,15 netHg19,62 netHg19,267 netMm10,15 netMm10,62 netMm10,267 netMonDom5,15 netMonDom5,62 netMonDom5,267 refSeqComposite,18 refSeqComposite,1004 refSeqComposite,1015 uniprot,14 uniprot,484 xenoRefGene,14 side gap,88 siepel transMapEnsemblV5,714 transMapEstV5,683 transMapRefSeqV5,683 transMapRnaV5,683 transMapV5,789 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signals genscan,34 genscan,187 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 signifies rmsk,258 similar nestedRepeats,199 uniprot,1403 simple microsat,57 microsat,85 rmsk,178 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainBosTau7,103 chainHg19,101 chainMm10,101 chainMonDom5,101 chainNetBosTau7,106 chainNetHg19,104 chainNetMm10,104 chainNetMonDom5,104 netBosTau7,103 netHg19,101 netMm10,101 netMonDom5,101 since chainBosTau7,579 chainHg19,576 chainMm10,576 chainMonDom5,576 chainNetBosTau7,582 chainNetHg19,579 chainNetMm10,579 chainNetMonDom5,579 netBosTau7,579 netHg19,576 netMm10,576 netMonDom5,576 uniprot,1383 sine rmsk,157 single chainBosTau7,130 chainBosTau7,139 chainBosTau7,629 chainBosTau7,634 chainHg19,128 chainHg19,137 chainHg19,626 chainHg19,631 chainMm10,128 chainMm10,137 chainMm10,626 chainMm10,631 chainMonDom5,128 chainMonDom5,137 chainMonDom5,626 chainMonDom5,631 chainNetBosTau7,133 chainNetBosTau7,142 chainNetBosTau7,632 chainNetBosTau7,637 chainNetHg19,131 chainNetHg19,140 chainNetHg19,629 chainNetHg19,634 chainNetMm10,131 chainNetMm10,140 chainNetMm10,629 chainNetMm10,634 chainNetMonDom5,131 chainNetMonDom5,140 chainNetMonDom5,629 chainNetMonDom5,634 mrna,402 nestedRepeats,178 netBosTau7,130 netBosTau7,139 netBosTau7,629 netBosTau7,634 netHg19,128 netHg19,137 netHg19,626 netHg19,631 netMm10,128 netMm10,137 netMm10,626 netMm10,631 netMonDom5,128 netMonDom5,137 netMonDom5,626 netMonDom5,631 refSeqComposite,534 refSeqComposite,1251 transMapEnsemblV5,480 transMapEstV5,449 transMapRefSeqV5,449 transMapRnaV5,449 transMapV5,555 uniprot,141 xenoRefGene,241 single-lined chainBosTau7,212 chainHg19,210 chainMm10,210 chainMonDom5,210 chainNetBosTau7,215 chainNetHg19,213 chainNetMm10,213 chainNetMonDom5,213 netBosTau7,212 netHg19,210 netMm10,210 netMonDom5,210 site genscan,157 windowmaskerSdust,45 sites augustusGene,54 augustusGene,59 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 refSeqComposite,272 uniprot,342 uniprot,354 uniprot,578 uniprot,585 size gap,135 skip refSeqComposite,1034 skipped refSeqComposite,1047 sm refSeqComposite,1755 xenoRefGene,325 small refSeqComposite,937 smallsize chainBosTau7,714 chainHg19,711 chainMm10,711 chainMonDom5,711 chainNetBosTau7,717 chainNetHg19,714 chainNetMm10,714 chainNetMonDom5,714 netBosTau7,714 netHg19,711 netMm10,711 netMonDom5,711 smit chainBosTau7,951 chainBosTau7,1095 chainHg19,948 chainHg19,1092 chainMm10,948 chainMm10,1092 chainMonDom5,948 chainMonDom5,1092 chainNetBosTau7,954 chainNetBosTau7,1098 chainNetHg19,951 chainNetHg19,1095 chainNetMm10,951 chainNetMm10,1095 chainNetMonDom5,951 chainNetMonDom5,1095 nestedRepeats,306 nestedRepeats,324 nestedRepeats,371 nestedRepeats,395 netBosTau7,951 netBosTau7,1095 netHg19,948 netHg19,1092 netMm10,948 netMm10,1092 netMonDom5,948 netMonDom5,1092 rmsk,17 rmsk,329 rmsk,347 rmsk,394 rmsk,418 snrna rmsk,192 so chainBosTau7,443 chainHg19,440 chainMm10,440 chainMonDom5,440 chainNetBosTau7,446 chainNetHg19,443 chainNetMm10,443 chainNetMonDom5,443 netBosTau7,443 netHg19,440 netMm10,440 netMonDom5,440 refSeqComposite,302 refSeqComposite,1616 uniprot,1135 uniprot,1430 society refSeqComposite,1079 soft-masked rmsk,305 software HLTOGAannotvHg38v1,327 nestedRepeats,255 refSeqComposite,377 some cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 mrna,104 nestedRepeats,207 refSeqComposite,660 refSeqComposite,708 rmsk,105 rmsk,268 transMapEnsemblV5,299 transMapEnsemblV5,309 transMapEstV5,268 transMapEstV5,278 transMapRefSeqV5,268 transMapRefSeqV5,278 transMapRnaV5,268 transMapRnaV5,278 transMapV5,374 transMapV5,384 uniprot,318 sometimes simpleRepeat,50 uniprot,983 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 sorted chainBosTau7,783 chainHg19,780 chainMm10,780 chainMonDom5,780 chainNetBosTau7,786 chainNetHg19,783 chainNetMm10,783 chainNetMonDom5,783 netBosTau7,783 netHg19,780 netMm10,780 netMonDom5,780 uniprot,556 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 refSeqComposite,1517 transMapEnsemblV5,153 transMapEnsemblV5,325 transMapEnsemblV5,343 transMapEnsemblV5,407 transMapEnsemblV5,432 transMapEnsemblV5,623 transMapEnsemblV5,637 transMapEstV5,122 transMapEstV5,294 transMapEstV5,312 transMapEstV5,376 transMapEstV5,401 transMapEstV5,592 transMapEstV5,606 transMapRefSeqV5,122 transMapRefSeqV5,294 transMapRefSeqV5,312 transMapRefSeqV5,376 transMapRefSeqV5,401 transMapRefSeqV5,592 transMapRefSeqV5,606 transMapRnaV5,122 transMapRnaV5,294 transMapRnaV5,312 transMapRnaV5,376 transMapRnaV5,401 transMapRnaV5,592 transMapRnaV5,606 transMapV5,228 transMapV5,400 transMapV5,418 transMapV5,482 transMapV5,507 transMapV5,698 transMapV5,712 uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 windowmaskerSdust,33 sources transMapEnsemblV5,48 transMapEnsemblV5,66 space mrna,216 uniprot,1990 spaces gold,100 span chainBosTau7,402 chainHg19,399 chainMm10,399 chainMonDom5,399 chainNetBosTau7,405 chainNetHg19,402 chainNetMm10,402 chainNetMonDom5,402 netBosTau7,402 netHg19,399 netMm10,399 netMonDom5,399 refSeqComposite,1006 specialized simpleRepeat,29 species HLTOGAannotvHg38v1,52 HLTOGAannotvHg38v1,127 augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainBosTau7,120 chainBosTau7,174 chainBosTau7,193 chainBosTau7,902 chainHg19,118 chainHg19,172 chainHg19,191 chainHg19,899 chainMm10,118 chainMm10,172 chainMm10,191 chainMm10,899 chainMonDom5,118 chainMonDom5,172 chainMonDom5,191 chainMonDom5,899 chainNetBosTau7,123 chainNetBosTau7,177 chainNetBosTau7,196 chainNetBosTau7,905 chainNetHg19,121 chainNetHg19,175 chainNetHg19,194 chainNetHg19,902 chainNetMm10,121 chainNetMm10,175 chainNetMm10,194 chainNetMm10,902 chainNetMonDom5,121 chainNetMonDom5,175 chainNetMonDom5,194 chainNetMonDom5,902 netBosTau7,120 netBosTau7,174 netBosTau7,193 netBosTau7,902 netHg19,118 netHg19,172 netHg19,191 netHg19,899 netMm10,118 netMm10,172 netMm10,191 netMm10,899 netMonDom5,118 netMonDom5,172 netMonDom5,191 netMonDom5,899 transMapEnsemblV5,32 transMapEnsemblV5,271 transMapEstV5,30 transMapEstV5,240 transMapRefSeqV5,30 transMapRefSeqV5,240 transMapRnaV5,30 transMapRnaV5,240 transMapV5,29 transMapV5,79 transMapV5,115 transMapV5,346 species-specific augustusGene,156 specific gap,34 gold,36 mrna,143 simpleRepeat,53 specification gap,60 gold,59 specify refSeqComposite,1114 speed refSeqComposite,1443 splice augustusGene,53 genscan,156 refSeqComposite,271 uniprot,144 spliced transMapEnsemblV5,176 transMapEstV5,17 transMapEstV5,145 transMapRefSeqV5,145 transMapRnaV5,145 transMapV5,251 splicing augustusGene,123 genscan,33 genscan,186 split chainBosTau7,584 chainHg19,581 chainMm10,581 chainMonDom5,581 chainNetBosTau7,587 chainNetHg19,584 chainNetMm10,584 chainNetMonDom5,584 netBosTau7,584 netHg19,581 netMm10,581 netMonDom5,581 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 squish nestedRepeats,159 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 srcuniq transMapEnsemblV5,424 transMapEstV5,393 transMapRefSeqV5,393 transMapRnaV5,393 transMapV5,499 srprna rmsk,194 staff refSeqComposite,643 refSeqComposite,694 uniprot,42 uniprot,1965 stage uniprot,1228 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 transMapEnsemblV5,757 transMapEstV5,726 transMapRefSeqV5,726 transMapRnaV5,726 transMapV5,832 start augustusGene,58 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 refSeqComposite,1559 transMapEnsemblV5,671 transMapEstV5,640 transMapRefSeqV5,640 transMapRnaV5,640 transMapV5,746 uniprot,125 uniprot,209 uniprot,1821 state chainBosTau7,928 chainBosTau7,1031 chainHg19,925 chainHg19,1028 chainMm10,925 chainMm10,1028 chainMonDom5,925 chainMonDom5,1028 chainNetBosTau7,931 chainNetBosTau7,1034 chainNetHg19,928 chainNetHg19,1031 chainNetMm10,928 chainNetMm10,1031 chainNetMonDom5,928 chainNetMonDom5,1031 netBosTau7,928 netBosTau7,1031 netHg19,925 netHg19,1028 netMm10,925 netMm10,1028 netMonDom5,925 netMonDom5,1028 statistical augustusGene,47 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 stdout cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 refSeqComposite,1563 transMapEnsemblV5,675 transMapEstV5,644 transMapRefSeqV5,644 transMapRnaV5,644 transMapV5,750 uniprot,1825 stefanie augustusGene,267 step transMapEnsemblV5,307 transMapEstV5,276 transMapRefSeqV5,276 transMapRnaV5,276 transMapV5,382 uniprot,901 uniprot,1155 uniprot,1330 stevens transMapEnsemblV5,723 transMapEstV5,692 transMapRefSeqV5,692 transMapRnaV5,692 transMapV5,798 storage chainBosTau7,985 chainHg19,982 chainMm10,982 chainMonDom5,982 chainNetBosTau7,988 chainNetHg19,985 chainNetMm10,985 chainNetMonDom5,985 netBosTau7,985 netHg19,982 netMm10,982 netMonDom5,982 stored refSeqComposite,1479 transMapEnsemblV5,544 transMapEstV5,513 transMapRefSeqV5,513 transMapRnaV5,513 transMapV5,619 uniprot,1733 strand chainBosTau7,252 chainHg19,250 chainMm10,250 chainMonDom5,250 chainNetBosTau7,255 chainNetHg19,253 chainNetMm10,253 chainNetMonDom5,253 cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 nestedRepeats,144 nestedRepeats,155 netBosTau7,252 netHg19,250 netMm10,250 netMonDom5,250 strands uniprot,365 strategy uniprot,1120 uniprot,1193 stringency transMapV5,120 strong HLTOGAannotvHg38v1,253 HLTOGAannotvHg38v1,282 structure augustusGene,113 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 genscan,215 studying chainBosTau7,295 chainHg19,293 chainMm10,293 chainMonDom5,293 chainNetBosTau7,298 chainNetHg19,296 chainNetMm10,296 chainNetMonDom5,296 netBosTau7,295 netHg19,293 netMm10,293 netMonDom5,293 subcellular uniprot,553 subject refSeqComposite,678 refSeqComposite,703 submit refSeqComposite,118 submitted mrna,453 transMapEnsemblV5,692 transMapEstV5,661 transMapRefSeqV5,661 transMapRnaV5,661 transMapV5,767 submodel augustusGene,331 subsections chainBosTau7,649 chainHg19,646 chainMm10,646 chainMonDom5,646 chainNetBosTau7,652 chainNetHg19,649 chainNetMm10,649 chainNetMonDom5,649 netBosTau7,649 netHg19,646 netMm10,646 netMonDom5,646 subsequent transMapEnsemblV5,442 transMapEstV5,411 transMapRefSeqV5,411 transMapRnaV5,411 transMapV5,517 subset microsat,54 mrna,82 ncbiRefSeqCurated,7 ncbiRefSeqPredicted,7 refSeqComposite,212 refSeqComposite,342 refSeqComposite,515 refSeqComposite,520 refSeqComposite,551 refSeqComposite,553 refSeqComposite,583 refSeqComposite,795 transMapEnsemblV5,208 transMapEstV5,177 transMapRefSeqV5,177 transMapRnaV5,177 transMapV5,283 substantial chainBosTau7,170 chainHg19,168 chainMm10,168 chainMonDom5,168 chainNetBosTau7,173 chainNetHg19,171 chainNetMm10,171 chainNetMonDom5,171 netBosTau7,170 netHg19,168 netMm10,168 netMonDom5,168 subtrack refSeqComposite,750 refSeqComposite,762 uniprot,411 subtracks chainBosTau7,30 chainBosTau7,37 chainHg19,29 chainHg19,36 chainMm10,29 chainMm10,36 chainMonDom5,29 chainMonDom5,36 chainNetBosTau7,33 chainNetBosTau7,40 chainNetHg19,32 chainNetHg19,39 chainNetMm10,32 chainNetMm10,39 chainNetMonDom5,32 chainNetMonDom5,39 netBosTau7,30 netBosTau7,37 netHg19,29 netHg19,36 netMm10,29 netMm10,36 netMonDom5,29 netMonDom5,36 refSeqComposite,35 refSeqComposite,163 refSeqComposite,187 refSeqComposite,1399 uniprot,59 uniprot,72 uniprot,520 uniprot,548 subtracts refSeqComposite,179 such chainBosTau7,863 chainHg19,860 chainMm10,860 chainMonDom5,860 chainNetBosTau7,866 chainNetHg19,863 chainNetMm10,863 chainNetMonDom5,863 cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 netBosTau7,863 netHg19,860 netMm10,860 netMonDom5,860 refSeqComposite,413 uniprot,306 suffix transMapEnsemblV5,401 transMapEstV5,370 transMapRefSeqV5,370 transMapRnaV5,370 transMapV5,476 uniprot,1255 suggestions refSeqComposite,117 suitable uniprot,1868 suppl augustusGene,336 supported gap,93 sure refSeqComposite,1100 uniprot,1407 swiss-prot uniprot,2025 swissprot unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 symp chainBosTau7,1045 chainHg19,1042 chainMm10,1042 chainMonDom5,1042 chainNetBosTau7,1048 chainNetHg19,1045 chainNetMm10,1045 chainNetMonDom5,1045 netBosTau7,1045 netHg19,1042 netMm10,1042 netMonDom5,1042 syn chainBosTau7,526 chainHg19,523 chainMm10,523 chainMonDom5,523 chainNetBosTau7,529 chainNetHg19,526 chainNetMm10,526 chainNetMonDom5,526 netBosTau7,526 netHg19,523 netMm10,523 netMonDom5,523 transMapEnsemblV5,255 transMapEstV5,224 transMapRefSeqV5,224 transMapRnaV5,224 transMapV5,330 syntenic chainBosTau7,289 chainBosTau7,870 chainHg19,287 chainHg19,867 chainMm10,287 chainMm10,867 chainMonDom5,287 chainMonDom5,867 chainNetBosTau7,292 chainNetBosTau7,873 chainNetHg19,290 chainNetHg19,870 chainNetMm10,290 chainNetMm10,870 chainNetMonDom5,290 chainNetMonDom5,870 netBosTau7,289 netBosTau7,870 netHg19,287 netHg19,867 netMm10,287 netMm10,867 netMonDom5,287 netMonDom5,867 transMapEnsemblV5,237 transMapEnsemblV5,517 transMapEstV5,206 transMapEstV5,486 transMapRefSeqV5,206 transMapRefSeqV5,486 transMapRnaV5,206 transMapRnaV5,486 transMapV5,312 transMapV5,592 syntenically augustusGene,297 transMapEnsemblV5,76 transMapEnsemblV5,768 transMapEstV5,45 transMapEstV5,737 transMapRefSeqV5,45 transMapRefSeqV5,737 transMapRnaV5,45 transMapRnaV5,737 transMapV5,44 transMapV5,843 synteny chainBosTau7,33 chainHg19,32 chainMm10,32 chainMonDom5,32 chainNetBosTau7,36 chainNetHg19,35 chainNetMm10,35 chainNetMonDom5,35 netBosTau7,33 netHg19,32 netMm10,32 netMonDom5,32 transMapEnsemblV5,276 transMapEstV5,245 transMapRefSeqV5,245 transMapRnaV5,245 transMapV5,351 synteny-filtered transMapV5,83 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 system chainBosTau7,81 chainHg19,79 chainMm10,79 chainMonDom5,79 chainNetBosTau7,84 chainNetHg19,82 chainNetMm10,82 chainNetMonDom5,82 netBosTau7,81 netHg19,79 netMm10,79 netMonDom5,79 refSeqComposite,1468 refSeqComposite,1527 transMapEnsemblV5,633 transMapEstV5,602 transMapRefSeqV5,602 transMapRnaV5,602 transMapV5,708 uniprot,1353 uniprot,1784 systems chainBosTau7,91 chainHg19,89 chainMm10,89 chainMonDom5,89 chainNetBosTau7,94 chainNetHg19,92 chainNetMm10,92 chainNetMonDom5,92 netBosTau7,91 netHg19,89 netMm10,89 netMonDom5,89 t cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 refSeqComposite,1795 xenoRefGene,365 t-100-25-9091 chainMonDom5,679 chainNetMonDom5,682 netMonDom5,679 t-123-31-11491 chainBosTau7,682 chainHg19,679 chainMm10,679 chainNetBosTau7,685 chainNetHg19,682 chainNetMm10,682 netBosTau7,682 netHg19,679 netMm10,679 table augustusGene,225 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 mrna,168 mrna,171 mrna,190 refSeqComposite,1180 refSeqComposite,1313 refSeqComposite,1358 refSeqComposite,1575 transMapEnsemblV5,532 transMapEstV5,501 transMapRefSeqV5,501 transMapRnaV5,501 transMapV5,607 uniprot,1720 windowmaskerSdust,85 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 refSeqComposite,82 refSeqComposite,1319 refSeqComposite,1404 refSeqComposite,1433 uniprot,1301 tablesize chainBosTau7,712 chainHg19,709 chainMm10,709 chainMonDom5,709 chainNetBosTau7,715 chainNetHg19,712 chainNetMm10,712 chainNetMonDom5,712 netBosTau7,712 netHg19,709 netMm10,709 netMonDom5,709 taken refSeqComposite,25 xenoRefGene,26 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 transMapEnsemblV5,509 transMapEstV5,478 transMapRefSeqV5,478 transMapRnaV5,478 transMapV5,584 targeted transMapEnsemblV5,737 transMapEstV5,706 transMapRefSeqV5,706 transMapRnaV5,706 transMapV5,812 targeting refSeqComposite,584 task mrna,110 tatusova refSeqComposite,1794 xenoRefGene,364 tblastn uniprot,1476 temperature augustusGene,141 ten rmsk,148 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 microsat,37 term mrna,117 terminal rmsk,167 terminology refSeqComposite,1075 terms mrna,161 mrna,207 text mrna,124 mrna,164 mrna,204 uniprot,1763 tgap chainBosTau7,740 chainHg19,737 chainMm10,737 chainMonDom5,737 chainNetBosTau7,743 chainNetHg19,740 chainNetMm10,740 chainNetMonDom5,740 netBosTau7,740 netHg19,737 netMm10,737 netMonDom5,737 th transMapEnsemblV5,796 transMapEstV5,765 transMapRefSeqV5,765 transMapRnaV5,765 transMapV5,871 than chainBosTau7,86 chainBosTau7,515 chainHg19,84 chainHg19,512 chainMm10,84 chainMm10,512 chainMonDom5,84 chainMonDom5,512 chainNetBosTau7,89 chainNetBosTau7,518 chainNetHg19,87 chainNetHg19,515 chainNetMm10,87 chainNetMm10,515 chainNetMonDom5,87 chainNetMonDom5,515 cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 mrna,229 nestedRepeats,213 nestedRepeats,271 netBosTau7,86 netBosTau7,515 netHg19,84 netHg19,512 netMm10,84 netMm10,512 netMonDom5,84 netMonDom5,512 refSeqComposite,1245 transMapEnsemblV5,225 transMapEnsemblV5,376 transMapEstV5,194 transMapEstV5,345 transMapRefSeqV5,194 transMapRefSeqV5,345 transMapRnaV5,194 transMapRnaV5,345 transMapV5,108 transMapV5,149 transMapV5,300 transMapV5,451 xenoRefGene,23 xenoRefGene,235 thanks augustusGene,248 genscan,170 nestedRepeats,303 rmsk,326 uniprot,1974 that HLTOGAannotvHg38v1,28 HLTOGAannotvHg38v1,77 HLTOGAannotvHg38v1,284 chainBosTau7,21 chainBosTau7,46 chainBosTau7,82 chainBosTau7,143 chainBosTau7,168 chainBosTau7,374 chainBosTau7,401 chainBosTau7,423 chainBosTau7,575 chainBosTau7,833 chainBosTau7,844 chainHg19,20 chainHg19,45 chainHg19,80 chainHg19,141 chainHg19,166 chainHg19,371 chainHg19,398 chainHg19,420 chainHg19,572 chainHg19,830 chainHg19,841 chainMm10,20 chainMm10,45 chainMm10,80 chainMm10,141 chainMm10,166 chainMm10,371 chainMm10,398 chainMm10,420 chainMm10,572 chainMm10,830 chainMm10,841 chainMonDom5,20 chainMonDom5,45 chainMonDom5,80 chainMonDom5,141 chainMonDom5,166 chainMonDom5,371 chainMonDom5,398 chainMonDom5,420 chainMonDom5,572 chainMonDom5,830 chainMonDom5,841 chainNetBosTau7,24 chainNetBosTau7,49 chainNetBosTau7,85 chainNetBosTau7,146 chainNetBosTau7,171 chainNetBosTau7,377 chainNetBosTau7,404 chainNetBosTau7,426 chainNetBosTau7,578 chainNetBosTau7,836 chainNetBosTau7,847 chainNetHg19,23 chainNetHg19,48 chainNetHg19,83 chainNetHg19,144 chainNetHg19,169 chainNetHg19,374 chainNetHg19,401 chainNetHg19,423 chainNetHg19,575 chainNetHg19,833 chainNetHg19,844 chainNetMm10,23 chainNetMm10,48 chainNetMm10,83 chainNetMm10,144 chainNetMm10,169 chainNetMm10,374 chainNetMm10,401 chainNetMm10,423 chainNetMm10,575 chainNetMm10,833 chainNetMm10,844 chainNetMonDom5,23 chainNetMonDom5,48 chainNetMonDom5,83 chainNetMonDom5,144 chainNetMonDom5,169 chainNetMonDom5,374 chainNetMonDom5,401 chainNetMonDom5,423 chainNetMonDom5,575 chainNetMonDom5,833 chainNetMonDom5,844 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 genscan,141 gold,75 gold,145 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,245 mrna,260 mrna,277 mrna,301 mrna,319 mrna,336 nestedRepeats,265 nestedRepeats,273 netBosTau7,21 netBosTau7,46 netBosTau7,82 netBosTau7,143 netBosTau7,168 netBosTau7,374 netBosTau7,401 netBosTau7,423 netBosTau7,575 netBosTau7,833 netBosTau7,844 netHg19,20 netHg19,45 netHg19,80 netHg19,141 netHg19,166 netHg19,371 netHg19,398 netHg19,420 netHg19,572 netHg19,830 netHg19,841 netMm10,20 netMm10,45 netMm10,80 netMm10,141 netMm10,166 netMm10,371 netMm10,398 netMm10,420 netMm10,572 netMm10,830 netMm10,841 netMonDom5,20 netMonDom5,45 netMonDom5,80 netMonDom5,141 netMonDom5,166 netMonDom5,371 netMonDom5,398 netMonDom5,420 netMonDom5,572 netMonDom5,830 netMonDom5,841 refSeqComposite,151 refSeqComposite,171 refSeqComposite,216 refSeqComposite,346 refSeqComposite,389 refSeqComposite,824 refSeqComposite,934 refSeqComposite,1025 refSeqComposite,1033 refSeqComposite,1058 refSeqComposite,1101 refSeqComposite,1622 rmsk,42 rmsk,259 transMapEnsemblV5,118 transMapEnsemblV5,194 transMapEnsemblV5,500 transMapEstV5,87 transMapEstV5,163 transMapEstV5,469 transMapRefSeqV5,87 transMapRefSeqV5,163 transMapRefSeqV5,469 transMapRnaV5,87 transMapRnaV5,163 transMapRnaV5,469 transMapV5,193 transMapV5,269 transMapV5,575 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoRefGene,148 the HLTOGAannotvHg38v1,67 HLTOGAannotvHg38v1,108 HLTOGAannotvHg38v1,120 HLTOGAannotvHg38v1,125 HLTOGAannotvHg38v1,147 HLTOGAannotvHg38v1,169 HLTOGAannotvHg38v1,174 HLTOGAannotvHg38v1,177 HLTOGAannotvHg38v1,181 HLTOGAannotvHg38v1,195 HLTOGAannotvHg38v1,202 HLTOGAannotvHg38v1,216 HLTOGAannotvHg38v1,221 HLTOGAannotvHg38v1,224 HLTOGAannotvHg38v1,228 HLTOGAannotvHg38v1,243 HLTOGAannotvHg38v1,247 HLTOGAannotvHg38v1,257 HLTOGAannotvHg38v1,285 HLTOGAannotvHg38v1,302 HLTOGAannotvHg38v1,307 HLTOGAannotvHg38v1,320 HLTOGAannotvHg38v1,325 augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 chainBosTau7,19 chainBosTau7,38 chainBosTau7,60 chainBosTau7,73 chainBosTau7,121 chainBosTau7,134 chainBosTau7,151 chainBosTau7,158 chainBosTau7,205 chainBosTau7,209 chainBosTau7,235 chainBosTau7,245 chainBosTau7,250 chainBosTau7,258 chainBosTau7,266 chainBosTau7,270 chainBosTau7,280 chainBosTau7,298 chainBosTau7,307 chainBosTau7,322 chainBosTau7,337 chainBosTau7,343 chainBosTau7,346 chainBosTau7,361 chainBosTau7,367 chainBosTau7,371 chainBosTau7,391 chainBosTau7,397 chainBosTau7,411 chainBosTau7,429 chainBosTau7,446 chainBosTau7,449 chainBosTau7,454 chainBosTau7,467 chainBosTau7,480 chainBosTau7,482 chainBosTau7,489 chainBosTau7,492 chainBosTau7,499 chainBosTau7,505 chainBosTau7,518 chainBosTau7,529 chainBosTau7,533 chainBosTau7,536 chainBosTau7,544 chainBosTau7,548 chainBosTau7,554 chainBosTau7,565 chainBosTau7,568 chainBosTau7,580 chainBosTau7,588 chainBosTau7,590 chainBosTau7,598 chainBosTau7,604 chainBosTau7,613 chainBosTau7,616 chainBosTau7,647 chainBosTau7,652 chainBosTau7,661 chainBosTau7,665 chainBosTau7,672 chainBosTau7,695 chainBosTau7,703 chainBosTau7,773 chainBosTau7,777 chainBosTau7,785 chainBosTau7,789 chainBosTau7,793 chainBosTau7,801 chainBosTau7,846 chainBosTau7,856 chainBosTau7,875 chainBosTau7,878 chainBosTau7,890 chainBosTau7,914 chainBosTau7,956 chainBosTau7,962 chainBosTau7,980 chainBosTau7,987 chainBosTau7,999 chainBosTau7,1008 chainBosTau7,1029 chainBosTau7,1069 chainHg19,18 chainHg19,37 chainHg19,59 chainHg19,71 chainHg19,119 chainHg19,132 chainHg19,149 chainHg19,156 chainHg19,203 chainHg19,207 chainHg19,233 chainHg19,243 chainHg19,248 chainHg19,256 chainHg19,264 chainHg19,268 chainHg19,278 chainHg19,296 chainHg19,305 chainHg19,319 chainHg19,334 chainHg19,340 chainHg19,343 chainHg19,358 chainHg19,364 chainHg19,368 chainHg19,388 chainHg19,394 chainHg19,408 chainHg19,426 chainHg19,443 chainHg19,446 chainHg19,451 chainHg19,464 chainHg19,477 chainHg19,479 chainHg19,486 chainHg19,489 chainHg19,496 chainHg19,502 chainHg19,515 chainHg19,526 chainHg19,530 chainHg19,533 chainHg19,541 chainHg19,545 chainHg19,551 chainHg19,562 chainHg19,565 chainHg19,577 chainHg19,585 chainHg19,587 chainHg19,595 chainHg19,601 chainHg19,610 chainHg19,613 chainHg19,644 chainHg19,649 chainHg19,658 chainHg19,662 chainHg19,669 chainHg19,692 chainHg19,700 chainHg19,770 chainHg19,774 chainHg19,782 chainHg19,786 chainHg19,790 chainHg19,798 chainHg19,843 chainHg19,853 chainHg19,872 chainHg19,875 chainHg19,887 chainHg19,911 chainHg19,953 chainHg19,959 chainHg19,977 chainHg19,984 chainHg19,996 chainHg19,1005 chainHg19,1026 chainHg19,1066 chainMm10,18 chainMm10,37 chainMm10,59 chainMm10,71 chainMm10,119 chainMm10,132 chainMm10,149 chainMm10,156 chainMm10,203 chainMm10,207 chainMm10,233 chainMm10,243 chainMm10,248 chainMm10,256 chainMm10,264 chainMm10,268 chainMm10,278 chainMm10,296 chainMm10,305 chainMm10,319 chainMm10,334 chainMm10,340 chainMm10,343 chainMm10,358 chainMm10,364 chainMm10,368 chainMm10,388 chainMm10,394 chainMm10,408 chainMm10,426 chainMm10,443 chainMm10,446 chainMm10,451 chainMm10,464 chainMm10,477 chainMm10,479 chainMm10,486 chainMm10,489 chainMm10,496 chainMm10,502 chainMm10,515 chainMm10,526 chainMm10,530 chainMm10,533 chainMm10,541 chainMm10,545 chainMm10,551 chainMm10,562 chainMm10,565 chainMm10,577 chainMm10,585 chainMm10,587 chainMm10,595 chainMm10,601 chainMm10,610 chainMm10,613 chainMm10,644 chainMm10,649 chainMm10,658 chainMm10,662 chainMm10,669 chainMm10,692 chainMm10,700 chainMm10,770 chainMm10,774 chainMm10,782 chainMm10,786 chainMm10,790 chainMm10,798 chainMm10,843 chainMm10,853 chainMm10,872 chainMm10,875 chainMm10,887 chainMm10,911 chainMm10,953 chainMm10,959 chainMm10,977 chainMm10,984 chainMm10,996 chainMm10,1005 chainMm10,1026 chainMm10,1066 chainMonDom5,18 chainMonDom5,37 chainMonDom5,59 chainMonDom5,71 chainMonDom5,119 chainMonDom5,132 chainMonDom5,149 chainMonDom5,156 chainMonDom5,203 chainMonDom5,207 chainMonDom5,233 chainMonDom5,243 chainMonDom5,248 chainMonDom5,256 chainMonDom5,264 chainMonDom5,268 chainMonDom5,278 chainMonDom5,296 chainMonDom5,305 chainMonDom5,319 chainMonDom5,334 chainMonDom5,340 chainMonDom5,343 chainMonDom5,358 chainMonDom5,364 chainMonDom5,368 chainMonDom5,388 chainMonDom5,394 chainMonDom5,408 chainMonDom5,426 chainMonDom5,443 chainMonDom5,446 chainMonDom5,451 chainMonDom5,464 chainMonDom5,477 chainMonDom5,479 chainMonDom5,486 chainMonDom5,489 chainMonDom5,496 chainMonDom5,502 chainMonDom5,515 chainMonDom5,526 chainMonDom5,530 chainMonDom5,533 chainMonDom5,541 chainMonDom5,545 chainMonDom5,551 chainMonDom5,562 chainMonDom5,565 chainMonDom5,577 chainMonDom5,585 chainMonDom5,587 chainMonDom5,595 chainMonDom5,601 chainMonDom5,610 chainMonDom5,613 chainMonDom5,644 chainMonDom5,649 chainMonDom5,658 chainMonDom5,662 chainMonDom5,669 chainMonDom5,692 chainMonDom5,700 chainMonDom5,770 chainMonDom5,774 chainMonDom5,782 chainMonDom5,786 chainMonDom5,790 chainMonDom5,798 chainMonDom5,843 chainMonDom5,853 chainMonDom5,872 chainMonDom5,875 chainMonDom5,887 chainMonDom5,911 chainMonDom5,953 chainMonDom5,959 chainMonDom5,977 chainMonDom5,984 chainMonDom5,996 chainMonDom5,1005 chainMonDom5,1026 chainMonDom5,1066 chainNetBosTau7,22 chainNetBosTau7,41 chainNetBosTau7,63 chainNetBosTau7,76 chainNetBosTau7,124 chainNetBosTau7,137 chainNetBosTau7,154 chainNetBosTau7,161 chainNetBosTau7,208 chainNetBosTau7,212 chainNetBosTau7,238 chainNetBosTau7,248 chainNetBosTau7,253 chainNetBosTau7,261 chainNetBosTau7,269 chainNetBosTau7,273 chainNetBosTau7,283 chainNetBosTau7,301 chainNetBosTau7,310 chainNetBosTau7,325 chainNetBosTau7,340 chainNetBosTau7,346 chainNetBosTau7,349 chainNetBosTau7,364 chainNetBosTau7,370 chainNetBosTau7,374 chainNetBosTau7,394 chainNetBosTau7,400 chainNetBosTau7,414 chainNetBosTau7,432 chainNetBosTau7,449 chainNetBosTau7,452 chainNetBosTau7,457 chainNetBosTau7,470 chainNetBosTau7,483 chainNetBosTau7,485 chainNetBosTau7,492 chainNetBosTau7,495 chainNetBosTau7,502 chainNetBosTau7,508 chainNetBosTau7,521 chainNetBosTau7,532 chainNetBosTau7,536 chainNetBosTau7,539 chainNetBosTau7,547 chainNetBosTau7,551 chainNetBosTau7,557 chainNetBosTau7,568 chainNetBosTau7,571 chainNetBosTau7,583 chainNetBosTau7,591 chainNetBosTau7,593 chainNetBosTau7,601 chainNetBosTau7,607 chainNetBosTau7,616 chainNetBosTau7,619 chainNetBosTau7,650 chainNetBosTau7,655 chainNetBosTau7,664 chainNetBosTau7,668 chainNetBosTau7,675 chainNetBosTau7,698 chainNetBosTau7,706 chainNetBosTau7,776 chainNetBosTau7,780 chainNetBosTau7,788 chainNetBosTau7,792 chainNetBosTau7,796 chainNetBosTau7,804 chainNetBosTau7,849 chainNetBosTau7,859 chainNetBosTau7,878 chainNetBosTau7,881 chainNetBosTau7,893 chainNetBosTau7,917 chainNetBosTau7,959 chainNetBosTau7,965 chainNetBosTau7,983 chainNetBosTau7,990 chainNetBosTau7,1002 chainNetBosTau7,1011 chainNetBosTau7,1032 chainNetBosTau7,1072 chainNetHg19,21 chainNetHg19,40 chainNetHg19,62 chainNetHg19,74 chainNetHg19,122 chainNetHg19,135 chainNetHg19,152 chainNetHg19,159 chainNetHg19,206 chainNetHg19,210 chainNetHg19,236 chainNetHg19,246 chainNetHg19,251 chainNetHg19,259 chainNetHg19,267 chainNetHg19,271 chainNetHg19,281 chainNetHg19,299 chainNetHg19,308 chainNetHg19,322 chainNetHg19,337 chainNetHg19,343 chainNetHg19,346 chainNetHg19,361 chainNetHg19,367 chainNetHg19,371 chainNetHg19,391 chainNetHg19,397 chainNetHg19,411 chainNetHg19,429 chainNetHg19,446 chainNetHg19,449 chainNetHg19,454 chainNetHg19,467 chainNetHg19,480 chainNetHg19,482 chainNetHg19,489 chainNetHg19,492 chainNetHg19,499 chainNetHg19,505 chainNetHg19,518 chainNetHg19,529 chainNetHg19,533 chainNetHg19,536 chainNetHg19,544 chainNetHg19,548 chainNetHg19,554 chainNetHg19,565 chainNetHg19,568 chainNetHg19,580 chainNetHg19,588 chainNetHg19,590 chainNetHg19,598 chainNetHg19,604 chainNetHg19,613 chainNetHg19,616 chainNetHg19,647 chainNetHg19,652 chainNetHg19,661 chainNetHg19,665 chainNetHg19,672 chainNetHg19,695 chainNetHg19,703 chainNetHg19,773 chainNetHg19,777 chainNetHg19,785 chainNetHg19,789 chainNetHg19,793 chainNetHg19,801 chainNetHg19,846 chainNetHg19,856 chainNetHg19,875 chainNetHg19,878 chainNetHg19,890 chainNetHg19,914 chainNetHg19,956 chainNetHg19,962 chainNetHg19,980 chainNetHg19,987 chainNetHg19,999 chainNetHg19,1008 chainNetHg19,1029 chainNetHg19,1069 chainNetMm10,21 chainNetMm10,40 chainNetMm10,62 chainNetMm10,74 chainNetMm10,122 chainNetMm10,135 chainNetMm10,152 chainNetMm10,159 chainNetMm10,206 chainNetMm10,210 chainNetMm10,236 chainNetMm10,246 chainNetMm10,251 chainNetMm10,259 chainNetMm10,267 chainNetMm10,271 chainNetMm10,281 chainNetMm10,299 chainNetMm10,308 chainNetMm10,322 chainNetMm10,337 chainNetMm10,343 chainNetMm10,346 chainNetMm10,361 chainNetMm10,367 chainNetMm10,371 chainNetMm10,391 chainNetMm10,397 chainNetMm10,411 chainNetMm10,429 chainNetMm10,446 chainNetMm10,449 chainNetMm10,454 chainNetMm10,467 chainNetMm10,480 chainNetMm10,482 chainNetMm10,489 chainNetMm10,492 chainNetMm10,499 chainNetMm10,505 chainNetMm10,518 chainNetMm10,529 chainNetMm10,533 chainNetMm10,536 chainNetMm10,544 chainNetMm10,548 chainNetMm10,554 chainNetMm10,565 chainNetMm10,568 chainNetMm10,580 chainNetMm10,588 chainNetMm10,590 chainNetMm10,598 chainNetMm10,604 chainNetMm10,613 chainNetMm10,616 chainNetMm10,647 chainNetMm10,652 chainNetMm10,661 chainNetMm10,665 chainNetMm10,672 chainNetMm10,695 chainNetMm10,703 chainNetMm10,773 chainNetMm10,777 chainNetMm10,785 chainNetMm10,789 chainNetMm10,793 chainNetMm10,801 chainNetMm10,846 chainNetMm10,856 chainNetMm10,875 chainNetMm10,878 chainNetMm10,890 chainNetMm10,914 chainNetMm10,956 chainNetMm10,962 chainNetMm10,980 chainNetMm10,987 chainNetMm10,999 chainNetMm10,1008 chainNetMm10,1029 chainNetMm10,1069 chainNetMonDom5,21 chainNetMonDom5,40 chainNetMonDom5,62 chainNetMonDom5,74 chainNetMonDom5,122 chainNetMonDom5,135 chainNetMonDom5,152 chainNetMonDom5,159 chainNetMonDom5,206 chainNetMonDom5,210 chainNetMonDom5,236 chainNetMonDom5,246 chainNetMonDom5,251 chainNetMonDom5,259 chainNetMonDom5,267 chainNetMonDom5,271 chainNetMonDom5,281 chainNetMonDom5,299 chainNetMonDom5,308 chainNetMonDom5,322 chainNetMonDom5,337 chainNetMonDom5,343 chainNetMonDom5,346 chainNetMonDom5,361 chainNetMonDom5,367 chainNetMonDom5,371 chainNetMonDom5,391 chainNetMonDom5,397 chainNetMonDom5,411 chainNetMonDom5,429 chainNetMonDom5,446 chainNetMonDom5,449 chainNetMonDom5,454 chainNetMonDom5,467 chainNetMonDom5,480 chainNetMonDom5,482 chainNetMonDom5,489 chainNetMonDom5,492 chainNetMonDom5,499 chainNetMonDom5,505 chainNetMonDom5,518 chainNetMonDom5,529 chainNetMonDom5,533 chainNetMonDom5,536 chainNetMonDom5,544 chainNetMonDom5,548 chainNetMonDom5,554 chainNetMonDom5,565 chainNetMonDom5,568 chainNetMonDom5,580 chainNetMonDom5,588 chainNetMonDom5,590 chainNetMonDom5,598 chainNetMonDom5,604 chainNetMonDom5,613 chainNetMonDom5,616 chainNetMonDom5,647 chainNetMonDom5,652 chainNetMonDom5,661 chainNetMonDom5,665 chainNetMonDom5,672 chainNetMonDom5,695 chainNetMonDom5,703 chainNetMonDom5,773 chainNetMonDom5,777 chainNetMonDom5,785 chainNetMonDom5,789 chainNetMonDom5,793 chainNetMonDom5,801 chainNetMonDom5,846 chainNetMonDom5,856 chainNetMonDom5,875 chainNetMonDom5,878 chainNetMonDom5,890 chainNetMonDom5,914 chainNetMonDom5,956 chainNetMonDom5,962 chainNetMonDom5,980 chainNetMonDom5,987 chainNetMonDom5,999 chainNetMonDom5,1008 chainNetMonDom5,1029 chainNetMonDom5,1069 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 gap,11 gap,14 gap,27 gap,39 gap,42 gap,49 gap,54 gap,56 gap,62 gap,65 gap,78 gap,84 gap,90 gap,110 gap,114 gap,119 gc5BaseBw,12 gc5BaseBw,17 gc5BaseBw,53 gc5BaseBw,57 gc5BaseBw,68 gc5BaseBw,72 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,29 gold,41 gold,48 gold,53 gold,55 gold,61 gold,64 gold,73 gold,78 gold,87 gold,104 gold,109 gold,115 gold,129 gold,134 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,223 mrna,233 mrna,265 mrna,272 mrna,286 mrna,295 mrna,303 mrna,312 mrna,321 mrna,338 mrna,345 mrna,356 mrna,379 mrna,394 mrna,397 mrna,408 mrna,411 mrna,427 mrna,436 mrna,442 mrna,455 mrna,521 ncbiRefSeqGenomicDiff,9 nestedRepeats,25 nestedRepeats,28 nestedRepeats,44 nestedRepeats,51 nestedRepeats,65 nestedRepeats,69 nestedRepeats,76 nestedRepeats,100 nestedRepeats,105 nestedRepeats,134 nestedRepeats,142 nestedRepeats,149 nestedRepeats,154 nestedRepeats,185 nestedRepeats,193 nestedRepeats,201 nestedRepeats,215 nestedRepeats,220 nestedRepeats,235 nestedRepeats,242 nestedRepeats,248 nestedRepeats,253 nestedRepeats,278 nestedRepeats,284 nestedRepeats,297 nestedRepeats,313 nestedRepeats,397 nestedRepeats,403 netBosTau7,19 netBosTau7,38 netBosTau7,60 netBosTau7,73 netBosTau7,121 netBosTau7,134 netBosTau7,151 netBosTau7,158 netBosTau7,205 netBosTau7,209 netBosTau7,235 netBosTau7,245 netBosTau7,250 netBosTau7,258 netBosTau7,266 netBosTau7,270 netBosTau7,280 netBosTau7,298 netBosTau7,307 netBosTau7,322 netBosTau7,337 netBosTau7,343 netBosTau7,346 netBosTau7,361 netBosTau7,367 netBosTau7,371 netBosTau7,391 netBosTau7,397 netBosTau7,411 netBosTau7,429 netBosTau7,446 netBosTau7,449 netBosTau7,454 netBosTau7,467 netBosTau7,480 netBosTau7,482 netBosTau7,489 netBosTau7,492 netBosTau7,499 netBosTau7,505 netBosTau7,518 netBosTau7,529 netBosTau7,533 netBosTau7,536 netBosTau7,544 netBosTau7,548 netBosTau7,554 netBosTau7,565 netBosTau7,568 netBosTau7,580 netBosTau7,588 netBosTau7,590 netBosTau7,598 netBosTau7,604 netBosTau7,613 netBosTau7,616 netBosTau7,647 netBosTau7,652 netBosTau7,661 netBosTau7,665 netBosTau7,672 netBosTau7,695 netBosTau7,703 netBosTau7,773 netBosTau7,777 netBosTau7,785 netBosTau7,789 netBosTau7,793 netBosTau7,801 netBosTau7,846 netBosTau7,856 netBosTau7,875 netBosTau7,878 netBosTau7,890 netBosTau7,914 netBosTau7,956 netBosTau7,962 netBosTau7,980 netBosTau7,987 netBosTau7,999 netBosTau7,1008 netBosTau7,1029 netBosTau7,1069 netHg19,18 netHg19,37 netHg19,59 netHg19,71 netHg19,119 netHg19,132 netHg19,149 netHg19,156 netHg19,203 netHg19,207 netHg19,233 netHg19,243 netHg19,248 netHg19,256 netHg19,264 netHg19,268 netHg19,278 netHg19,296 netHg19,305 netHg19,319 netHg19,334 netHg19,340 netHg19,343 netHg19,358 netHg19,364 netHg19,368 netHg19,388 netHg19,394 netHg19,408 netHg19,426 netHg19,443 netHg19,446 netHg19,451 netHg19,464 netHg19,477 netHg19,479 netHg19,486 netHg19,489 netHg19,496 netHg19,502 netHg19,515 netHg19,526 netHg19,530 netHg19,533 netHg19,541 netHg19,545 netHg19,551 netHg19,562 netHg19,565 netHg19,577 netHg19,585 netHg19,587 netHg19,595 netHg19,601 netHg19,610 netHg19,613 netHg19,644 netHg19,649 netHg19,658 netHg19,662 netHg19,669 netHg19,692 netHg19,700 netHg19,770 netHg19,774 netHg19,782 netHg19,786 netHg19,790 netHg19,798 netHg19,843 netHg19,853 netHg19,872 netHg19,875 netHg19,887 netHg19,911 netHg19,953 netHg19,959 netHg19,977 netHg19,984 netHg19,996 netHg19,1005 netHg19,1026 netHg19,1066 netMm10,18 netMm10,37 netMm10,59 netMm10,71 netMm10,119 netMm10,132 netMm10,149 netMm10,156 netMm10,203 netMm10,207 netMm10,233 netMm10,243 netMm10,248 netMm10,256 netMm10,264 netMm10,268 netMm10,278 netMm10,296 netMm10,305 netMm10,319 netMm10,334 netMm10,340 netMm10,343 netMm10,358 netMm10,364 netMm10,368 netMm10,388 netMm10,394 netMm10,408 netMm10,426 netMm10,443 netMm10,446 netMm10,451 netMm10,464 netMm10,477 netMm10,479 netMm10,486 netMm10,489 netMm10,496 netMm10,502 netMm10,515 netMm10,526 netMm10,530 netMm10,533 netMm10,541 netMm10,545 netMm10,551 netMm10,562 netMm10,565 netMm10,577 netMm10,585 netMm10,587 netMm10,595 netMm10,601 netMm10,610 netMm10,613 netMm10,644 netMm10,649 netMm10,658 netMm10,662 netMm10,669 netMm10,692 netMm10,700 netMm10,770 netMm10,774 netMm10,782 netMm10,786 netMm10,790 netMm10,798 netMm10,843 netMm10,853 netMm10,872 netMm10,875 netMm10,887 netMm10,911 netMm10,953 netMm10,959 netMm10,977 netMm10,984 netMm10,996 netMm10,1005 netMm10,1026 netMm10,1066 netMonDom5,18 netMonDom5,37 netMonDom5,59 netMonDom5,71 netMonDom5,119 netMonDom5,132 netMonDom5,149 netMonDom5,156 netMonDom5,203 netMonDom5,207 netMonDom5,233 netMonDom5,243 netMonDom5,248 netMonDom5,256 netMonDom5,264 netMonDom5,268 netMonDom5,278 netMonDom5,296 netMonDom5,305 netMonDom5,319 netMonDom5,334 netMonDom5,340 netMonDom5,343 netMonDom5,358 netMonDom5,364 netMonDom5,368 netMonDom5,388 netMonDom5,394 netMonDom5,408 netMonDom5,426 netMonDom5,443 netMonDom5,446 netMonDom5,451 netMonDom5,464 netMonDom5,477 netMonDom5,479 netMonDom5,486 netMonDom5,489 netMonDom5,496 netMonDom5,502 netMonDom5,515 netMonDom5,526 netMonDom5,530 netMonDom5,533 netMonDom5,541 netMonDom5,545 netMonDom5,551 netMonDom5,562 netMonDom5,565 netMonDom5,577 netMonDom5,585 netMonDom5,587 netMonDom5,595 netMonDom5,601 netMonDom5,610 netMonDom5,613 netMonDom5,644 netMonDom5,649 netMonDom5,658 netMonDom5,662 netMonDom5,669 netMonDom5,692 netMonDom5,700 netMonDom5,770 netMonDom5,774 netMonDom5,782 netMonDom5,786 netMonDom5,790 netMonDom5,798 netMonDom5,843 netMonDom5,853 netMonDom5,872 netMonDom5,875 netMonDom5,887 netMonDom5,911 netMonDom5,953 netMonDom5,959 netMonDom5,977 netMonDom5,984 netMonDom5,996 netMonDom5,1005 netMonDom5,1026 netMonDom5,1066 refSeqComposite,12 refSeqComposite,27 refSeqComposite,43 refSeqComposite,52 refSeqComposite,56 refSeqComposite,66 refSeqComposite,90 refSeqComposite,98 refSeqComposite,133 refSeqComposite,165 refSeqComposite,169 refSeqComposite,185 refSeqComposite,240 refSeqComposite,281 refSeqComposite,284 refSeqComposite,290 refSeqComposite,307 refSeqComposite,313 refSeqComposite,325 refSeqComposite,333 refSeqComposite,369 refSeqComposite,373 refSeqComposite,386 refSeqComposite,393 refSeqComposite,398 refSeqComposite,402 refSeqComposite,441 refSeqComposite,447 refSeqComposite,451 refSeqComposite,463 refSeqComposite,497 refSeqComposite,507 refSeqComposite,529 refSeqComposite,560 refSeqComposite,571 refSeqComposite,579 refSeqComposite,587 refSeqComposite,599 refSeqComposite,606 refSeqComposite,610 refSeqComposite,614 refSeqComposite,635 refSeqComposite,648 refSeqComposite,658 refSeqComposite,671 refSeqComposite,682 refSeqComposite,696 refSeqComposite,711 refSeqComposite,716 refSeqComposite,732 refSeqComposite,736 refSeqComposite,739 refSeqComposite,745 refSeqComposite,752 refSeqComposite,757 refSeqComposite,761 refSeqComposite,774 refSeqComposite,780 refSeqComposite,788 refSeqComposite,800 refSeqComposite,811 refSeqComposite,839 refSeqComposite,844 refSeqComposite,859 refSeqComposite,868 refSeqComposite,879 refSeqComposite,884 refSeqComposite,888 refSeqComposite,907 refSeqComposite,913 refSeqComposite,921 refSeqComposite,927 refSeqComposite,977 refSeqComposite,1001 refSeqComposite,1005 refSeqComposite,1008 refSeqComposite,1012 refSeqComposite,1016 refSeqComposite,1051 refSeqComposite,1063 refSeqComposite,1110 refSeqComposite,1115 refSeqComposite,1121 refSeqComposite,1130 refSeqComposite,1144 refSeqComposite,1159 refSeqComposite,1176 refSeqComposite,1185 refSeqComposite,1190 refSeqComposite,1198 refSeqComposite,1212 refSeqComposite,1220 refSeqComposite,1233 refSeqComposite,1257 refSeqComposite,1260 refSeqComposite,1276 refSeqComposite,1285 refSeqComposite,1292 refSeqComposite,1310 refSeqComposite,1318 refSeqComposite,1339 refSeqComposite,1346 refSeqComposite,1367 refSeqComposite,1370 refSeqComposite,1387 refSeqComposite,1397 refSeqComposite,1426 refSeqComposite,1449 refSeqComposite,1465 refSeqComposite,1470 refSeqComposite,1473 refSeqComposite,1498 refSeqComposite,1516 refSeqComposite,1529 refSeqComposite,1547 refSeqComposite,1572 refSeqComposite,1577 refSeqComposite,1581 refSeqComposite,1593 refSeqComposite,1598 refSeqComposite,1602 refSeqComposite,1606 refSeqComposite,1612 refSeqComposite,1644 refSeqComposite,1649 refSeqComposite,1652 refSeqComposite,1659 refSeqComposite,1669 refSeqComposite,1698 refSeqComposite,1727 refSeqComposite,1735 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,101 rmsk,118 rmsk,204 rmsk,210 rmsk,214 rmsk,229 rmsk,231 rmsk,236 rmsk,238 rmsk,244 rmsk,247 rmsk,260 rmsk,265 rmsk,271 rmsk,274 rmsk,281 rmsk,291 rmsk,320 rmsk,336 rmsk,420 rmsk,426 simpleRepeat,60 transMapEnsemblV5,24 transMapEnsemblV5,34 transMapEnsemblV5,71 transMapEnsemblV5,86 transMapEnsemblV5,99 transMapEnsemblV5,120 transMapEnsemblV5,127 transMapEnsemblV5,162 transMapEnsemblV5,179 transMapEnsemblV5,202 transMapEnsemblV5,210 transMapEnsemblV5,253 transMapEnsemblV5,257 transMapEnsemblV5,261 transMapEnsemblV5,273 transMapEnsemblV5,279 transMapEnsemblV5,296 transMapEnsemblV5,304 transMapEnsemblV5,311 transMapEnsemblV5,313 transMapEnsemblV5,324 transMapEnsemblV5,329 transMapEnsemblV5,333 transMapEnsemblV5,342 transMapEnsemblV5,346 transMapEnsemblV5,348 transMapEnsemblV5,379 transMapEnsemblV5,406 transMapEnsemblV5,416 transMapEnsemblV5,419 transMapEnsemblV5,441 transMapEnsemblV5,450 transMapEnsemblV5,463 transMapEnsemblV5,473 transMapEnsemblV5,485 transMapEnsemblV5,506 transMapEnsemblV5,520 transMapEnsemblV5,531 transMapEnsemblV5,535 transMapEnsemblV5,541 transMapEnsemblV5,580 transMapEnsemblV5,588 transMapEnsemblV5,606 transMapEnsemblV5,622 transMapEnsemblV5,645 transMapEnsemblV5,694 transMapEnsemblV5,706 transMapEnsemblV5,808 transMapEstV5,22 transMapEstV5,32 transMapEstV5,40 transMapEstV5,55 transMapEstV5,68 transMapEstV5,89 transMapEstV5,96 transMapEstV5,131 transMapEstV5,148 transMapEstV5,171 transMapEstV5,179 transMapEstV5,222 transMapEstV5,226 transMapEstV5,230 transMapEstV5,242 transMapEstV5,248 transMapEstV5,265 transMapEstV5,273 transMapEstV5,280 transMapEstV5,282 transMapEstV5,293 transMapEstV5,298 transMapEstV5,302 transMapEstV5,311 transMapEstV5,315 transMapEstV5,317 transMapEstV5,348 transMapEstV5,375 transMapEstV5,385 transMapEstV5,388 transMapEstV5,410 transMapEstV5,419 transMapEstV5,432 transMapEstV5,442 transMapEstV5,454 transMapEstV5,475 transMapEstV5,489 transMapEstV5,500 transMapEstV5,504 transMapEstV5,510 transMapEstV5,549 transMapEstV5,557 transMapEstV5,575 transMapEstV5,591 transMapEstV5,614 transMapEstV5,663 transMapEstV5,675 transMapEstV5,777 transMapRefSeqV5,22 transMapRefSeqV5,32 transMapRefSeqV5,40 transMapRefSeqV5,55 transMapRefSeqV5,68 transMapRefSeqV5,89 transMapRefSeqV5,96 transMapRefSeqV5,131 transMapRefSeqV5,148 transMapRefSeqV5,171 transMapRefSeqV5,179 transMapRefSeqV5,222 transMapRefSeqV5,226 transMapRefSeqV5,230 transMapRefSeqV5,242 transMapRefSeqV5,248 transMapRefSeqV5,265 transMapRefSeqV5,273 transMapRefSeqV5,280 transMapRefSeqV5,282 transMapRefSeqV5,293 transMapRefSeqV5,298 transMapRefSeqV5,302 transMapRefSeqV5,311 transMapRefSeqV5,315 transMapRefSeqV5,317 transMapRefSeqV5,348 transMapRefSeqV5,375 transMapRefSeqV5,385 transMapRefSeqV5,388 transMapRefSeqV5,410 transMapRefSeqV5,419 transMapRefSeqV5,432 transMapRefSeqV5,442 transMapRefSeqV5,454 transMapRefSeqV5,475 transMapRefSeqV5,489 transMapRefSeqV5,500 transMapRefSeqV5,504 transMapRefSeqV5,510 transMapRefSeqV5,549 transMapRefSeqV5,557 transMapRefSeqV5,575 transMapRefSeqV5,591 transMapRefSeqV5,614 transMapRefSeqV5,663 transMapRefSeqV5,675 transMapRefSeqV5,777 transMapRnaV5,22 transMapRnaV5,32 transMapRnaV5,40 transMapRnaV5,55 transMapRnaV5,68 transMapRnaV5,89 transMapRnaV5,96 transMapRnaV5,131 transMapRnaV5,148 transMapRnaV5,171 transMapRnaV5,179 transMapRnaV5,222 transMapRnaV5,226 transMapRnaV5,230 transMapRnaV5,242 transMapRnaV5,248 transMapRnaV5,265 transMapRnaV5,273 transMapRnaV5,280 transMapRnaV5,282 transMapRnaV5,293 transMapRnaV5,298 transMapRnaV5,302 transMapRnaV5,311 transMapRnaV5,315 transMapRnaV5,317 transMapRnaV5,348 transMapRnaV5,375 transMapRnaV5,385 transMapRnaV5,388 transMapRnaV5,410 transMapRnaV5,419 transMapRnaV5,432 transMapRnaV5,442 transMapRnaV5,454 transMapRnaV5,475 transMapRnaV5,489 transMapRnaV5,500 transMapRnaV5,504 transMapRnaV5,510 transMapRnaV5,549 transMapRnaV5,557 transMapRnaV5,575 transMapRnaV5,591 transMapRnaV5,614 transMapRnaV5,663 transMapRnaV5,675 transMapRnaV5,777 transMapV5,21 transMapV5,31 transMapV5,39 transMapV5,56 transMapV5,92 transMapV5,99 transMapV5,104 transMapV5,122 transMapV5,127 transMapV5,133 transMapV5,137 transMapV5,174 transMapV5,195 transMapV5,202 transMapV5,237 transMapV5,254 transMapV5,277 transMapV5,285 transMapV5,328 transMapV5,332 transMapV5,336 transMapV5,348 transMapV5,354 transMapV5,371 transMapV5,379 transMapV5,386 transMapV5,388 transMapV5,399 transMapV5,404 transMapV5,408 transMapV5,417 transMapV5,421 transMapV5,423 transMapV5,454 transMapV5,481 transMapV5,491 transMapV5,494 transMapV5,516 transMapV5,525 transMapV5,538 transMapV5,548 transMapV5,560 transMapV5,581 transMapV5,595 transMapV5,606 transMapV5,610 transMapV5,616 transMapV5,655 transMapV5,663 transMapV5,681 transMapV5,697 transMapV5,720 transMapV5,769 transMapV5,781 transMapV5,883 ucscToINSDC,26 ucscToINSDC,33 ucscToINSDC,38 ucscToINSDC,43 ucscToRefSeq,21 ucscToRefSeq,27 ucscToRefSeq,32 ucscToRefSeq,37 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,183 xenoRefGene,198 xenoRefGene,211 xenoRefGene,218 xenoRefGene,223 xenoRefGene,247 xenoRefGene,250 xenoRefGene,266 xenoRefGene,275 xenoRefGene,298 their nestedRepeats,190 uniprot,62 uniprot,723 uniprot,1101 them chainBosTau7,808 chainHg19,805 chainMm10,805 chainMonDom5,805 chainNetBosTau7,811 chainNetHg19,808 chainNetMm10,808 chainNetMonDom5,808 cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 netBosTau7,808 netHg19,805 netMm10,805 netMonDom5,805 rmsk,318 uniprot,20 uniprot,173 uniprot,483 then chainBosTau7,658 chainBosTau7,797 chainBosTau7,882 chainHg19,655 chainHg19,794 chainHg19,879 chainMm10,655 chainMm10,794 chainMm10,879 chainMonDom5,655 chainMonDom5,794 chainMonDom5,879 chainNetBosTau7,661 chainNetBosTau7,800 chainNetBosTau7,885 chainNetHg19,658 chainNetHg19,797 chainNetHg19,882 chainNetMm10,658 chainNetMm10,797 chainNetMm10,882 chainNetMonDom5,658 chainNetMonDom5,797 chainNetMonDom5,882 cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 nestedRepeats,232 netBosTau7,658 netBosTau7,797 netBosTau7,882 netHg19,655 netHg19,794 netHg19,879 netMm10,655 netMm10,794 netMm10,879 netMonDom5,655 netMonDom5,794 netMonDom5,879 transMapV5,130 uniprot,1083 uniprot,1516 there HLTOGAannotvHg38v1,237 HLTOGAannotvHg38v1,280 cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 transMapEnsemblV5,453 transMapEstV5,422 transMapRefSeqV5,422 transMapRnaV5,422 transMapV5,528 uniprot,705 uniprot,1092 therefore gold,123 refSeqComposite,1635 uniprot,968 uniprot,1145 these HLTOGAannotvHg38v1,158 HLTOGAannotvHg38v1,187 HLTOGAannotvHg38v1,261 augustusGene,95 augustusGene,190 chainBosTau7,53 chainBosTau7,104 chainBosTau7,416 chainBosTau7,670 chainHg19,52 chainHg19,102 chainHg19,413 chainHg19,667 chainMm10,52 chainMm10,102 chainMm10,413 chainMm10,667 chainMonDom5,52 chainMonDom5,102 chainMonDom5,413 chainMonDom5,667 chainNetBosTau7,56 chainNetBosTau7,107 chainNetBosTau7,419 chainNetBosTau7,673 chainNetHg19,55 chainNetHg19,105 chainNetHg19,416 chainNetHg19,670 chainNetMm10,55 chainNetMm10,105 chainNetMm10,416 chainNetMm10,670 chainNetMonDom5,55 chainNetMonDom5,105 chainNetMonDom5,416 chainNetMonDom5,670 microsat,24 nestedRepeats,262 nestedRepeats,266 netBosTau7,53 netBosTau7,104 netBosTau7,416 netBosTau7,670 netHg19,52 netHg19,102 netHg19,413 netHg19,667 netMm10,52 netMm10,102 netMm10,413 netMm10,667 netMonDom5,52 netMonDom5,102 netMonDom5,413 netMonDom5,667 refSeqComposite,322 refSeqComposite,332 refSeqComposite,797 refSeqComposite,1296 refSeqComposite,1432 rmsk,235 simpleRepeat,33 transMapEnsemblV5,460 transMapEnsemblV5,469 transMapEnsemblV5,524 transMapEnsemblV5,585 transMapEstV5,429 transMapEstV5,438 transMapEstV5,493 transMapEstV5,554 transMapRefSeqV5,429 transMapRefSeqV5,438 transMapRefSeqV5,493 transMapRefSeqV5,554 transMapRnaV5,429 transMapRnaV5,438 transMapRnaV5,493 transMapRnaV5,554 transMapV5,12 transMapV5,535 transMapV5,544 transMapV5,599 transMapV5,660 uniprot,99 uniprot,130 uniprot,1160 thesis chainBosTau7,1028 chainHg19,1025 chainMm10,1025 chainMonDom5,1025 chainNetBosTau7,1031 chainNetHg19,1028 chainNetMm10,1028 chainNetMonDom5,1028 netBosTau7,1028 netHg19,1025 netMm10,1025 netMonDom5,1025 they chainBosTau7,333 chainHg19,330 chainMm10,330 chainMonDom5,330 chainNetBosTau7,336 chainNetHg19,333 chainNetMm10,333 chainNetMonDom5,333 netBosTau7,333 netHg19,330 netMm10,330 netMonDom5,330 refSeqComposite,248 refSeqComposite,292 refSeqComposite,357 refSeqComposite,419 uniprot,179 thibaud-nissen refSeqComposite,1756 xenoRefGene,326 thick chainBosTau7,44 chainHg19,43 chainMm10,43 chainMonDom5,43 chainNetBosTau7,47 chainNetHg19,46 chainNetMm10,46 chainNetMonDom5,46 netBosTau7,44 netHg19,43 netMm10,43 netMonDom5,43 refSeqComposite,997 refSeqComposite,1013 thin refSeqComposite,995 refSeqComposite,1002 this HLTOGAannotvHg38v1,315 augustusGene,13 augustusGene,106 augustusGene,224 chainBosTau7,14 chainBosTau7,175 chainBosTau7,303 chainBosTau7,403 chainBosTau7,701 chainBosTau7,823 chainHg19,13 chainHg19,173 chainHg19,301 chainHg19,400 chainHg19,698 chainHg19,820 chainMm10,13 chainMm10,173 chainMm10,301 chainMm10,400 chainMm10,698 chainMm10,820 chainMonDom5,13 chainMonDom5,173 chainMonDom5,301 chainMonDom5,400 chainMonDom5,698 chainMonDom5,820 chainNetBosTau7,17 chainNetBosTau7,178 chainNetBosTau7,306 chainNetBosTau7,406 chainNetBosTau7,704 chainNetBosTau7,826 chainNetHg19,16 chainNetHg19,176 chainNetHg19,304 chainNetHg19,403 chainNetHg19,701 chainNetHg19,823 chainNetMm10,16 chainNetMm10,176 chainNetMm10,304 chainNetMm10,403 chainNetMm10,701 chainNetMm10,823 chainNetMonDom5,16 chainNetMonDom5,176 chainNetMonDom5,304 chainNetMonDom5,403 chainNetMonDom5,701 chainNetMonDom5,823 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 gap,8 gap,37 gap,45 gap,75 gap,116 gc5BaseBw,38 gc5BaseBw,77 genscan,11 genscan,65 genscan,128 gold,9 gold,39 gold,44 gold,70 gold,140 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,324 mrna,352 nestedRepeats,15 nestedRepeats,79 nestedRepeats,321 netBosTau7,14 netBosTau7,175 netBosTau7,303 netBosTau7,403 netBosTau7,701 netBosTau7,823 netHg19,13 netHg19,173 netHg19,301 netHg19,400 netHg19,698 netHg19,820 netMm10,13 netMm10,173 netMm10,301 netMm10,400 netMm10,698 netMm10,820 netMonDom5,13 netMonDom5,173 netMonDom5,301 netMonDom5,400 netMonDom5,698 netMonDom5,820 refSeqComposite,58 refSeqComposite,145 refSeqComposite,501 refSeqComposite,565 refSeqComposite,726 refSeqComposite,816 refSeqComposite,855 refSeqComposite,1390 refSeqComposite,1438 refSeqComposite,1626 refSeqComposite,1712 rmsk,10 rmsk,51 rmsk,143 rmsk,344 simpleRepeat,12 simpleRepeat,31 transMapEnsemblV5,15 transMapEnsemblV5,96 transMapEnsemblV5,106 transMapEnsemblV5,134 transMapEnsemblV5,288 transMapEnsemblV5,677 transMapEstV5,13 transMapEstV5,65 transMapEstV5,75 transMapEstV5,103 transMapEstV5,257 transMapEstV5,646 transMapRefSeqV5,14 transMapRefSeqV5,65 transMapRefSeqV5,75 transMapRefSeqV5,103 transMapRefSeqV5,257 transMapRefSeqV5,646 transMapRnaV5,14 transMapRnaV5,65 transMapRnaV5,75 transMapRnaV5,103 transMapRnaV5,257 transMapRnaV5,646 transMapV5,171 transMapV5,181 transMapV5,209 transMapV5,363 transMapV5,752 ucscToINSDC,14 ucscToINSDC,46 ucscToRefSeq,9 ucscToRefSeq,40 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,179 xenoRefGene,215 xenoRefGene,281 those microsat,62 mrna,317 nestedRepeats,272 refSeqComposite,219 refSeqComposite,348 refSeqComposite,1239 uniprot,729 xenoRefGene,229 thousands chainBosTau7,256 chainHg19,254 chainMm10,254 chainMonDom5,254 chainNetBosTau7,259 chainNetHg19,257 chainNetMm10,257 chainNetMonDom5,257 netBosTau7,256 netHg19,254 netMm10,254 netMonDom5,254 three uniprot,1227 three-step uniprot,989 through gap,109 nestedRepeats,97 refSeqComposite,731 refSeqComposite,1325 refSeqComposite,1363 rmsk,309 transMapEnsemblV5,530 transMapEstV5,499 transMapRefSeqV5,499 transMapRnaV5,499 transMapV5,605 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,90 thus HLTOGAannotvHg38v1,279 time chainBosTau7,806 chainHg19,803 chainMm10,803 chainMonDom5,803 chainNetBosTau7,809 chainNetHg19,806 chainNetMm10,806 chainNetMonDom5,806 cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 netBosTau7,806 netHg19,803 netMm10,803 netMonDom5,803 tissue mrna,153 mrna,188 mrna,203 tissues mrna,196 to HLTOGAannotvHg38v1,18 HLTOGAannotvHg38v1,90 HLTOGAannotvHg38v1,99 HLTOGAannotvHg38v1,106 HLTOGAannotvHg38v1,208 HLTOGAannotvHg38v1,255 HLTOGAannotvHg38v1,289 augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 chainBosTau7,24 chainBosTau7,72 chainBosTau7,147 chainBosTau7,217 chainBosTau7,229 chainBosTau7,324 chainBosTau7,335 chainBosTau7,340 chainBosTau7,352 chainBosTau7,358 chainBosTau7,381 chainBosTau7,462 chainBosTau7,476 chainBosTau7,560 chainBosTau7,663 chainBosTau7,799 chainBosTau7,811 chainBosTau7,851 chainBosTau7,874 chainBosTau7,884 chainHg19,23 chainHg19,70 chainHg19,145 chainHg19,215 chainHg19,227 chainHg19,321 chainHg19,332 chainHg19,337 chainHg19,349 chainHg19,355 chainHg19,378 chainHg19,459 chainHg19,473 chainHg19,557 chainHg19,660 chainHg19,796 chainHg19,808 chainHg19,848 chainHg19,871 chainHg19,881 chainMm10,23 chainMm10,70 chainMm10,145 chainMm10,215 chainMm10,227 chainMm10,321 chainMm10,332 chainMm10,337 chainMm10,349 chainMm10,355 chainMm10,378 chainMm10,459 chainMm10,473 chainMm10,557 chainMm10,660 chainMm10,796 chainMm10,808 chainMm10,848 chainMm10,871 chainMm10,881 chainMonDom5,23 chainMonDom5,70 chainMonDom5,145 chainMonDom5,215 chainMonDom5,227 chainMonDom5,321 chainMonDom5,332 chainMonDom5,337 chainMonDom5,349 chainMonDom5,355 chainMonDom5,378 chainMonDom5,459 chainMonDom5,473 chainMonDom5,557 chainMonDom5,660 chainMonDom5,796 chainMonDom5,808 chainMonDom5,848 chainMonDom5,871 chainMonDom5,881 chainNetBosTau7,27 chainNetBosTau7,75 chainNetBosTau7,150 chainNetBosTau7,220 chainNetBosTau7,232 chainNetBosTau7,327 chainNetBosTau7,338 chainNetBosTau7,343 chainNetBosTau7,355 chainNetBosTau7,361 chainNetBosTau7,384 chainNetBosTau7,465 chainNetBosTau7,479 chainNetBosTau7,563 chainNetBosTau7,666 chainNetBosTau7,802 chainNetBosTau7,814 chainNetBosTau7,854 chainNetBosTau7,877 chainNetBosTau7,887 chainNetHg19,26 chainNetHg19,73 chainNetHg19,148 chainNetHg19,218 chainNetHg19,230 chainNetHg19,324 chainNetHg19,335 chainNetHg19,340 chainNetHg19,352 chainNetHg19,358 chainNetHg19,381 chainNetHg19,462 chainNetHg19,476 chainNetHg19,560 chainNetHg19,663 chainNetHg19,799 chainNetHg19,811 chainNetHg19,851 chainNetHg19,874 chainNetHg19,884 chainNetMm10,26 chainNetMm10,73 chainNetMm10,148 chainNetMm10,218 chainNetMm10,230 chainNetMm10,324 chainNetMm10,335 chainNetMm10,340 chainNetMm10,352 chainNetMm10,358 chainNetMm10,381 chainNetMm10,462 chainNetMm10,476 chainNetMm10,560 chainNetMm10,663 chainNetMm10,799 chainNetMm10,811 chainNetMm10,851 chainNetMm10,874 chainNetMm10,884 chainNetMonDom5,26 chainNetMonDom5,73 chainNetMonDom5,148 chainNetMonDom5,218 chainNetMonDom5,230 chainNetMonDom5,324 chainNetMonDom5,335 chainNetMonDom5,340 chainNetMonDom5,352 chainNetMonDom5,358 chainNetMonDom5,381 chainNetMonDom5,462 chainNetMonDom5,476 chainNetMonDom5,560 chainNetMonDom5,663 chainNetMonDom5,799 chainNetMonDom5,811 chainNetMonDom5,851 chainNetMonDom5,874 chainNetMonDom5,884 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 gc5BaseBw,48 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,132 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,281 mrna,330 mrna,340 mrna,355 mrna,378 mrna,454 nestedRepeats,148 nestedRepeats,152 nestedRepeats,174 nestedRepeats,184 nestedRepeats,200 nestedRepeats,225 nestedRepeats,234 nestedRepeats,260 nestedRepeats,304 nestedRepeats,319 netBosTau7,24 netBosTau7,72 netBosTau7,147 netBosTau7,217 netBosTau7,229 netBosTau7,324 netBosTau7,335 netBosTau7,340 netBosTau7,352 netBosTau7,358 netBosTau7,381 netBosTau7,462 netBosTau7,476 netBosTau7,560 netBosTau7,663 netBosTau7,799 netBosTau7,811 netBosTau7,851 netBosTau7,874 netBosTau7,884 netHg19,23 netHg19,70 netHg19,145 netHg19,215 netHg19,227 netHg19,321 netHg19,332 netHg19,337 netHg19,349 netHg19,355 netHg19,378 netHg19,459 netHg19,473 netHg19,557 netHg19,660 netHg19,796 netHg19,808 netHg19,848 netHg19,871 netHg19,881 netMm10,23 netMm10,70 netMm10,145 netMm10,215 netMm10,227 netMm10,321 netMm10,332 netMm10,337 netMm10,349 netMm10,355 netMm10,378 netMm10,459 netMm10,473 netMm10,557 netMm10,660 netMm10,796 netMm10,808 netMm10,848 netMm10,871 netMm10,881 netMonDom5,23 netMonDom5,70 netMonDom5,145 netMonDom5,215 netMonDom5,227 netMonDom5,321 netMonDom5,332 netMonDom5,337 netMonDom5,349 netMonDom5,355 netMonDom5,378 netMonDom5,459 netMonDom5,473 netMonDom5,557 netMonDom5,660 netMonDom5,796 netMonDom5,808 netMonDom5,848 netMonDom5,871 netMonDom5,881 refSeqComposite,55 refSeqComposite,115 refSeqComposite,156 refSeqComposite,168 refSeqComposite,174 refSeqComposite,306 refSeqComposite,309 refSeqComposite,324 refSeqComposite,368 refSeqComposite,440 refSeqComposite,496 refSeqComposite,679 refSeqComposite,704 refSeqComposite,743 refSeqComposite,756 refSeqComposite,778 refSeqComposite,827 refSeqComposite,834 refSeqComposite,858 refSeqComposite,905 refSeqComposite,911 refSeqComposite,919 refSeqComposite,925 refSeqComposite,938 refSeqComposite,980 refSeqComposite,1029 refSeqComposite,1062 refSeqComposite,1098 refSeqComposite,1109 refSeqComposite,1175 refSeqComposite,1442 refSeqComposite,1536 refSeqComposite,1589 refSeqComposite,1688 rmsk,147 rmsk,315 rmsk,327 rmsk,342 simpleRepeat,81 transMapEnsemblV5,112 transMapEnsemblV5,122 transMapEnsemblV5,178 transMapEnsemblV5,201 transMapEnsemblV5,260 transMapEnsemblV5,293 transMapEnsemblV5,301 transMapEnsemblV5,318 transMapEnsemblV5,332 transMapEnsemblV5,345 transMapEnsemblV5,384 transMapEnsemblV5,429 transMapEnsemblV5,439 transMapEnsemblV5,472 transMapEnsemblV5,478 transMapEnsemblV5,491 transMapEnsemblV5,651 transMapEnsemblV5,693 transMapEnsemblV5,772 transMapEstV5,81 transMapEstV5,91 transMapEstV5,147 transMapEstV5,170 transMapEstV5,229 transMapEstV5,262 transMapEstV5,270 transMapEstV5,287 transMapEstV5,301 transMapEstV5,314 transMapEstV5,353 transMapEstV5,398 transMapEstV5,408 transMapEstV5,441 transMapEstV5,447 transMapEstV5,460 transMapEstV5,620 transMapEstV5,662 transMapEstV5,741 transMapRefSeqV5,81 transMapRefSeqV5,91 transMapRefSeqV5,147 transMapRefSeqV5,170 transMapRefSeqV5,229 transMapRefSeqV5,262 transMapRefSeqV5,270 transMapRefSeqV5,287 transMapRefSeqV5,301 transMapRefSeqV5,314 transMapRefSeqV5,353 transMapRefSeqV5,398 transMapRefSeqV5,408 transMapRefSeqV5,441 transMapRefSeqV5,447 transMapRefSeqV5,460 transMapRefSeqV5,620 transMapRefSeqV5,662 transMapRefSeqV5,741 transMapRnaV5,81 transMapRnaV5,91 transMapRnaV5,147 transMapRnaV5,170 transMapRnaV5,229 transMapRnaV5,262 transMapRnaV5,270 transMapRnaV5,287 transMapRnaV5,301 transMapRnaV5,314 transMapRnaV5,353 transMapRnaV5,398 transMapRnaV5,408 transMapRnaV5,441 transMapRnaV5,447 transMapRnaV5,460 transMapRnaV5,620 transMapRnaV5,662 transMapRnaV5,741 transMapV5,80 transMapV5,90 transMapV5,121 transMapV5,132 transMapV5,155 transMapV5,187 transMapV5,197 transMapV5,253 transMapV5,276 transMapV5,335 transMapV5,368 transMapV5,376 transMapV5,393 transMapV5,407 transMapV5,420 transMapV5,459 transMapV5,504 transMapV5,514 transMapV5,547 transMapV5,553 transMapV5,566 transMapV5,726 transMapV5,768 transMapV5,847 ucscToINSDC,22 ucscToRefSeq,17 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 windowmaskerSdust,47 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,182 xenoRefGene,208 toga HLTOGAannotvHg38v1,1 HLTOGAannotvHg38v1,4 HLTOGAannotvHg38v1,16 HLTOGAannotvHg38v1,44 HLTOGAannotvHg38v1,72 HLTOGAannotvHg38v1,326 HLTOGAannotvHg38v1,333 together chainBosTau7,127 chainHg19,125 chainMm10,125 chainMonDom5,125 chainNetBosTau7,130 chainNetHg19,128 chainNetMm10,128 chainNetMonDom5,128 netBosTau7,127 netHg19,125 netMm10,125 netMonDom5,125 tolerate chainBosTau7,95 chainHg19,93 chainMm10,93 chainMonDom5,93 chainNetBosTau7,98 chainNetHg19,96 chainNetMm10,96 chainNetMonDom5,96 netBosTau7,95 netHg19,93 netMm10,93 netMonDom5,93 tolerated uniprot,1257 too refSeqComposite,936 tool HLTOGAannotvHg38v1,17 mrna,524 refSeqComposite,1509 refSeqComposite,1738 transMapEnsemblV5,615 transMapEnsemblV5,646 transMapEstV5,584 transMapEstV5,615 transMapRefSeqV5,584 transMapRefSeqV5,615 transMapRnaV5,584 transMapRnaV5,615 transMapV5,690 transMapV5,721 uniprot,1766 uniprot,1797 windowmaskerSdust,24 xenoRefGene,308 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools nestedRepeats,314 rmsk,337 uniprot,1873 top chainBosTau7,517 chainHg19,514 chainMm10,514 chainMonDom5,514 chainNetBosTau7,520 chainNetHg19,517 chainNetMm10,517 chainNetMonDom5,517 cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 netBosTau7,517 netHg19,514 netMm10,514 netMonDom5,514 refSeqComposite,737 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,95 top-level chainBosTau7,392 chainBosTau7,412 chainHg19,389 chainHg19,409 chainMm10,389 chainMm10,409 chainMonDom5,389 chainMonDom5,409 chainNetBosTau7,395 chainNetBosTau7,415 chainNetHg19,392 chainNetHg19,412 chainNetMm10,392 chainNetMm10,412 chainNetMonDom5,392 chainNetMonDom5,412 netBosTau7,392 netBosTau7,412 netHg19,389 netHg19,409 netMm10,389 netMm10,409 netMonDom5,389 netMonDom5,409 top-scoring uniprot,792 topological uniprot,330 track augustusGene,14 augustusGene,107 chainBosTau7,15 chainBosTau7,59 chainBosTau7,62 chainBosTau7,123 chainBosTau7,265 chainBosTau7,268 chainBosTau7,319 chainBosTau7,354 chainBosTau7,386 chainBosTau7,573 chainBosTau7,702 chainBosTau7,765 chainHg19,14 chainHg19,58 chainHg19,61 chainHg19,121 chainHg19,263 chainHg19,266 chainHg19,316 chainHg19,351 chainHg19,383 chainHg19,570 chainHg19,699 chainHg19,762 chainMm10,14 chainMm10,58 chainMm10,61 chainMm10,121 chainMm10,263 chainMm10,266 chainMm10,316 chainMm10,351 chainMm10,383 chainMm10,570 chainMm10,699 chainMm10,762 chainMonDom5,14 chainMonDom5,58 chainMonDom5,61 chainMonDom5,121 chainMonDom5,263 chainMonDom5,266 chainMonDom5,316 chainMonDom5,351 chainMonDom5,383 chainMonDom5,570 chainMonDom5,699 chainMonDom5,762 chainNetBosTau7,18 chainNetBosTau7,62 chainNetBosTau7,65 chainNetBosTau7,126 chainNetBosTau7,268 chainNetBosTau7,271 chainNetBosTau7,322 chainNetBosTau7,357 chainNetBosTau7,389 chainNetBosTau7,576 chainNetBosTau7,705 chainNetBosTau7,768 chainNetHg19,17 chainNetHg19,61 chainNetHg19,64 chainNetHg19,124 chainNetHg19,266 chainNetHg19,269 chainNetHg19,319 chainNetHg19,354 chainNetHg19,386 chainNetHg19,573 chainNetHg19,702 chainNetHg19,765 chainNetMm10,17 chainNetMm10,61 chainNetMm10,64 chainNetMm10,124 chainNetMm10,266 chainNetMm10,269 chainNetMm10,319 chainNetMm10,354 chainNetMm10,386 chainNetMm10,573 chainNetMm10,702 chainNetMm10,765 chainNetMonDom5,17 chainNetMonDom5,61 chainNetMonDom5,64 chainNetMonDom5,124 chainNetMonDom5,266 chainNetMonDom5,269 chainNetMonDom5,319 chainNetMonDom5,354 chainNetMonDom5,386 chainNetMonDom5,573 chainNetMonDom5,702 chainNetMonDom5,765 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 gap,9 gap,76 gc5BaseBw,15 gc5BaseBw,39 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,71 gold,141 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,325 mrna,444 nestedRepeats,16 nestedRepeats,78 nestedRepeats,80 nestedRepeats,322 netBosTau7,15 netBosTau7,59 netBosTau7,62 netBosTau7,123 netBosTau7,265 netBosTau7,268 netBosTau7,319 netBosTau7,354 netBosTau7,386 netBosTau7,573 netBosTau7,702 netBosTau7,765 netHg19,14 netHg19,58 netHg19,61 netHg19,121 netHg19,263 netHg19,266 netHg19,316 netHg19,351 netHg19,383 netHg19,570 netHg19,699 netHg19,762 netMm10,14 netMm10,58 netMm10,61 netMm10,121 netMm10,263 netMm10,266 netMm10,316 netMm10,351 netMm10,383 netMm10,570 netMm10,699 netMm10,762 netMonDom5,14 netMonDom5,58 netMonDom5,61 netMonDom5,121 netMonDom5,263 netMonDom5,266 netMonDom5,316 netMonDom5,351 netMonDom5,383 netMonDom5,570 netMonDom5,699 netMonDom5,762 refSeqComposite,17 refSeqComposite,46 refSeqComposite,146 refSeqComposite,150 refSeqComposite,312 refSeqComposite,316 refSeqComposite,329 refSeqComposite,336 refSeqComposite,473 refSeqComposite,502 refSeqComposite,512 refSeqComposite,566 refSeqComposite,727 refSeqComposite,740 refSeqComposite,758 refSeqComposite,817 refSeqComposite,846 refSeqComposite,871 refSeqComposite,1201 refSeqComposite,1216 refSeqComposite,1341 refSeqComposite,1713 rmsk,11 rmsk,52 rmsk,144 rmsk,345 simpleRepeat,13 transMapEnsemblV5,16 transMapEnsemblV5,97 transMapEnsemblV5,107 transMapEnsemblV5,233 transMapEnsemblV5,572 transMapEnsemblV5,576 transMapEnsemblV5,678 transMapEstV5,14 transMapEstV5,66 transMapEstV5,76 transMapEstV5,202 transMapEstV5,541 transMapEstV5,545 transMapEstV5,647 transMapRefSeqV5,15 transMapRefSeqV5,66 transMapRefSeqV5,76 transMapRefSeqV5,202 transMapRefSeqV5,541 transMapRefSeqV5,545 transMapRefSeqV5,647 transMapRnaV5,15 transMapRnaV5,66 transMapRnaV5,76 transMapRnaV5,202 transMapRnaV5,541 transMapRnaV5,545 transMapRnaV5,647 transMapV5,102 transMapV5,172 transMapV5,182 transMapV5,308 transMapV5,647 transMapV5,651 transMapV5,753 ucscToINSDC,15 ucscToINSDC,47 ucscToRefSeq,10 ucscToRefSeq,41 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,282 tracks augustusGene,41 chainBosTau7,779 chainHg19,776 chainMm10,776 chainMonDom5,776 chainNetBosTau7,782 chainNetHg19,779 chainNetMm10,779 chainNetMonDom5,779 genscan,56 genscan,74 mrna,40 mrna,363 netBosTau7,779 netHg19,776 netMm10,776 netMonDom5,776 refSeqComposite,100 refSeqComposite,136 refSeqComposite,170 refSeqComposite,405 refSeqComposite,456 refSeqComposite,597 refSeqComposite,605 refSeqComposite,1141 refSeqComposite,1151 refSeqComposite,1227 refSeqComposite,1297 refSeqComposite,1376 refSeqComposite,1477 refSeqComposite,1584 refSeqComposite,1677 refSeqComposite,1702 transMapEnsemblV5,105 transMapEnsemblV5,525 transMapEnsemblV5,586 transMapEstV5,74 transMapEstV5,494 transMapEstV5,555 transMapRefSeqV5,74 transMapRefSeqV5,494 transMapRefSeqV5,555 transMapRnaV5,74 transMapRnaV5,494 transMapRnaV5,555 transMapV5,13 transMapV5,180 transMapV5,600 transMapV5,661 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoRefGene,56 traditional chainBosTau7,87 chainHg19,85 chainMm10,85 chainMonDom5,85 chainNetBosTau7,90 chainNetHg19,88 chainNetMm10,88 chainNetMonDom5,88 netBosTau7,87 netHg19,85 netMm10,85 netMonDom5,85 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed refSeqComposite,431 transcript HLTOGAannotvHg38v1,118 HLTOGAannotvHg38v1,134 HLTOGAannotvHg38v1,258 HLTOGAannotvHg38v1,286 HLTOGAannotvHg38v1,297 refSeqComposite,536 refSeqComposite,886 refSeqComposite,914 refSeqComposite,922 refSeqComposite,993 refSeqComposite,1036 refSeqComposite,1057 refSeqComposite,1122 refSeqComposite,1132 transMapEnsemblV5,154 transMapEnsemblV5,326 transMapEnsemblV5,380 transMapEstV5,123 transMapEstV5,295 transMapEstV5,349 transMapRefSeqV5,123 transMapRefSeqV5,295 transMapRefSeqV5,349 transMapRnaV5,123 transMapRnaV5,295 transMapRnaV5,349 transMapV5,229 transMapV5,401 transMapV5,455 uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcription cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 transcriptional genscan,28 transcripts HLTOGAannotvHg38v1,159 HLTOGAannotvHg38v1,188 HLTOGAannotvHg38v1,262 augustusGene,124 ncbiRefSeqGenomicDiff,7 refSeqComposite,256 refSeqComposite,323 refSeqComposite,472 refSeqComposite,524 refSeqComposite,557 refSeqComposite,1809 transMapEnsemblV5,344 transMapEstV5,313 transMapRefSeqV5,313 transMapRnaV5,313 transMapV5,419 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 xenoRefGene,379 translated transMapV5,156 translation augustusGene,57 translational genscan,29 transmap transMapEnsemblV5,1 transMapEnsemblV5,3 transMapEnsemblV5,25 transMapEnsemblV5,443 transMapEnsemblV5,502 transMapEnsemblV5,591 transMapEnsemblV5,594 transMapEnsemblV5,597 transMapEnsemblV5,600 transMapEnsemblV5,666 transMapEstV5,1 transMapEstV5,3 transMapEstV5,23 transMapEstV5,412 transMapEstV5,471 transMapEstV5,560 transMapEstV5,563 transMapEstV5,566 transMapEstV5,569 transMapEstV5,635 transMapRefSeqV5,1 transMapRefSeqV5,3 transMapRefSeqV5,23 transMapRefSeqV5,412 transMapRefSeqV5,471 transMapRefSeqV5,560 transMapRefSeqV5,563 transMapRefSeqV5,566 transMapRefSeqV5,569 transMapRefSeqV5,635 transMapRnaV5,1 transMapRnaV5,3 transMapRnaV5,23 transMapRnaV5,412 transMapRnaV5,471 transMapRnaV5,560 transMapRnaV5,563 transMapRnaV5,566 transMapRnaV5,569 transMapRnaV5,635 transMapV5,1 transMapV5,3 transMapV5,22 transMapV5,71 transMapV5,101 transMapV5,158 transMapV5,518 transMapV5,577 transMapV5,666 transMapV5,669 transMapV5,672 transMapV5,675 transMapV5,741 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposable nestedRepeats,379 rmsk,402 transposons chainBosTau7,574 chainBosTau7,599 chainBosTau7,909 chainHg19,571 chainHg19,596 chainHg19,906 chainMm10,571 chainMm10,596 chainMm10,906 chainMonDom5,571 chainMonDom5,596 chainMonDom5,906 chainNetBosTau7,577 chainNetBosTau7,602 chainNetBosTau7,912 chainNetHg19,574 chainNetHg19,599 chainNetHg19,909 chainNetMm10,574 chainNetMm10,599 chainNetMm10,909 chainNetMonDom5,574 chainNetMonDom5,599 chainNetMonDom5,909 netBosTau7,574 netBosTau7,599 netBosTau7,909 netHg19,571 netHg19,596 netHg19,906 netMm10,571 netMm10,596 netMm10,906 netMonDom5,571 netMonDom5,596 netMonDom5,906 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trends nestedRepeats,353 rmsk,376 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trimming chainBosTau7,807 chainHg19,804 chainMm10,804 chainMonDom5,804 chainNetBosTau7,810 chainNetHg19,807 chainNetMm10,807 chainNetMonDom5,807 netBosTau7,807 netHg19,804 netMm10,804 netMonDom5,804 trna rmsk,190 true augustusGene,132 windowmaskerSdust,60 windowmaskerSdust,69 ts cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 turn chainBosTau7,341 chainHg19,338 chainMm10,338 chainMonDom5,338 chainNetBosTau7,344 chainNetHg19,341 chainNetMm10,341 chainNetMonDom5,341 cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 netBosTau7,341 netHg19,338 netMm10,338 netMonDom5,338 refSeqComposite,809 xenoRefGene,133 turns uniprot,370 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 two chainBosTau7,915 chainHg19,912 chainMm10,912 chainMonDom5,912 chainNetBosTau7,918 chainNetHg19,915 chainNetMm10,915 chainNetMonDom5,915 netBosTau7,915 netHg19,912 netMm10,912 netMonDom5,912 transMapEnsemblV5,455 transMapEnsemblV5,492 transMapEstV5,424 transMapEstV5,461 transMapRefSeqV5,424 transMapRefSeqV5,461 transMapRnaV5,424 transMapRnaV5,461 transMapV5,530 transMapV5,567 uniprot,71 uniprot,630 uniprot,1641 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 type gold,146 mrna,115 mrna,145 uniprot,65 uniprot,271 uniprot,464 uniprot,614 types augustusGene,89 chainBosTau7,513 chainHg19,510 chainMm10,510 chainMonDom5,510 chainNetBosTau7,516 chainNetHg19,513 chainNetMm10,513 chainNetMonDom5,513 gap,122 gold,137 mrna,194 mrna,366 netBosTau7,513 netHg19,510 netMm10,510 netMonDom5,510 refSeqComposite,875 refSeqComposite,890 transMapEnsemblV5,139 transMapEstV5,108 transMapRefSeqV5,108 transMapRnaV5,108 transMapV5,214 uniprot,676 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 refSeqComposite,430 typically HLTOGAannotvHg38v1,273 cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 gc5BaseBw,33 u chainBosTau7,1078 chainHg19,1075 chainMm10,1075 chainMonDom5,1075 chainNetBosTau7,1081 chainNetHg19,1078 chainNetMm10,1078 chainNetMonDom5,1078 netBosTau7,1078 netHg19,1075 netMm10,1075 netMonDom5,1075 ucsc mrna,448 nestedRepeats,245 refSeqComposite,44 refSeqComposite,48 refSeqComposite,71 refSeqComposite,193 refSeqComposite,334 refSeqComposite,480 refSeqComposite,486 refSeqComposite,595 refSeqComposite,1155 refSeqComposite,1205 refSeqComposite,1213 refSeqComposite,1418 refSeqComposite,1603 refSeqComposite,1717 transMapEnsemblV5,35 transMapEnsemblV5,163 transMapEnsemblV5,184 transMapEnsemblV5,685 transMapEstV5,33 transMapEstV5,132 transMapEstV5,153 transMapEstV5,654 transMapRefSeqV5,33 transMapRefSeqV5,132 transMapRefSeqV5,153 transMapRefSeqV5,654 transMapRnaV5,33 transMapRnaV5,132 transMapRnaV5,153 transMapRnaV5,654 transMapV5,32 transMapV5,238 transMapV5,259 transMapV5,760 ucscToINSDC,17 ucscToRefSeq,12 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoRefGene,286 unambiguously refSeqComposite,1112 uncertain HLTOGAannotvHg38v1,235 uncheck refSeqComposite,164 undergone refSeqComposite,618 xenoRefGene,69 underlies genscan,142 underlying uniprot,1682 xenoRefGene,37 underneath chainBosTau7,843 chainHg19,840 chainMm10,840 chainMonDom5,840 chainNetBosTau7,846 chainNetHg19,843 chainNetMm10,843 chainNetMonDom5,843 netBosTau7,843 netHg19,840 netMm10,840 netMonDom5,840 unexpected uniprot,766 ungapped chainBosTau7,452 chainHg19,449 chainMm10,449 chainMonDom5,449 chainNetBosTau7,455 chainNetHg19,452 chainNetMm10,452 chainNetMonDom5,452 netBosTau7,452 netHg19,449 netMm10,449 netMonDom5,449 uniprot unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique transMapEnsemblV5,386 transMapEnsemblV5,397 transMapEnsemblV5,434 transMapEnsemblV5,445 transMapEstV5,355 transMapEstV5,366 transMapEstV5,403 transMapEstV5,414 transMapRefSeqV5,355 transMapRefSeqV5,366 transMapRefSeqV5,403 transMapRefSeqV5,414 transMapRnaV5,355 transMapRnaV5,366 transMapRnaV5,403 transMapRnaV5,414 transMapV5,461 transMapV5,472 transMapV5,509 transMapV5,520 uniprot,1600 universal uniprot,1993 university chainBosTau7,929 chainBosTau7,963 chainBosTau7,1009 chainBosTau7,1032 chainHg19,926 chainHg19,960 chainHg19,1006 chainHg19,1029 chainMm10,926 chainMm10,960 chainMm10,1006 chainMm10,1029 chainMonDom5,926 chainMonDom5,960 chainMonDom5,1006 chainMonDom5,1029 chainNetBosTau7,932 chainNetBosTau7,966 chainNetBosTau7,1012 chainNetBosTau7,1035 chainNetHg19,929 chainNetHg19,963 chainNetHg19,1009 chainNetHg19,1032 chainNetMm10,929 chainNetMm10,963 chainNetMm10,1009 chainNetMm10,1032 chainNetMonDom5,929 chainNetMonDom5,963 chainNetMonDom5,1009 chainNetMonDom5,1032 netBosTau7,929 netBosTau7,963 netBosTau7,1009 netBosTau7,1032 netHg19,926 netHg19,960 netHg19,1006 netHg19,1029 netMm10,926 netMm10,960 netMm10,1006 netMm10,1029 netMonDom5,926 netMonDom5,960 netMonDom5,1006 netMonDom5,1029 unknown rmsk,203 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 nestedRepeats,206 unlikely HLTOGAannotvHg38v1,288 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unprocessed chainBosTau7,232 chainHg19,230 chainMm10,230 chainMonDom5,230 chainNetBosTau7,235 chainNetHg19,233 chainNetMm10,233 chainNetMonDom5,233 netBosTau7,232 netHg19,230 netMm10,230 netMonDom5,230 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 unsequenced chainBosTau7,189 chainHg19,187 chainMm10,187 chainMonDom5,187 chainNetBosTau7,192 chainNetHg19,190 chainNetMm10,190 chainNetMonDom5,190 netBosTau7,189 netHg19,187 netMm10,187 netMonDom5,187 unsure rmsk,263 untranscribed refSeqComposite,408 up gold,77 refSeqComposite,1444 refSeqComposite,1638 rmsk,146 update mrna,503 nestedRepeats,46 nestedRepeats,58 nestedRepeats,336 nestedRepeats,343 refSeqComposite,1774 rmsk,82 rmsk,94 rmsk,359 rmsk,366 xenoRefGene,344 updated uniprot,1566 xenoRefGene,41 us uniprot,687 uniprot,1441 use gold,88 mrna,112 refSeqComposite,36 refSeqComposite,1546 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 used HLTOGAannotvHg38v1,105 augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 chainBosTau7,301 chainBosTau7,676 chainBosTau7,707 chainBosTau7,798 chainBosTau7,850 chainBosTau7,883 chainHg19,299 chainHg19,673 chainHg19,704 chainHg19,795 chainHg19,847 chainHg19,880 chainMm10,299 chainMm10,673 chainMm10,704 chainMm10,795 chainMm10,847 chainMm10,880 chainMonDom5,299 chainMonDom5,673 chainMonDom5,704 chainMonDom5,795 chainMonDom5,847 chainMonDom5,880 chainNetBosTau7,304 chainNetBosTau7,679 chainNetBosTau7,710 chainNetBosTau7,801 chainNetBosTau7,853 chainNetBosTau7,886 chainNetHg19,302 chainNetHg19,676 chainNetHg19,707 chainNetHg19,798 chainNetHg19,850 chainNetHg19,883 chainNetMm10,302 chainNetMm10,676 chainNetMm10,707 chainNetMm10,798 chainNetMm10,850 chainNetMm10,883 chainNetMonDom5,302 chainNetMonDom5,676 chainNetMonDom5,707 chainNetMonDom5,798 chainNetMonDom5,850 chainNetMonDom5,883 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 genscan,159 gold,14 mrna,69 mrna,221 mrna,280 nestedRepeats,247 nestedRepeats,292 nestedRepeats,318 netBosTau7,301 netBosTau7,676 netBosTau7,707 netBosTau7,798 netBosTau7,850 netBosTau7,883 netHg19,299 netHg19,673 netHg19,704 netHg19,795 netHg19,847 netHg19,880 netMm10,299 netMm10,673 netMm10,704 netMm10,795 netMm10,847 netMm10,880 netMonDom5,299 netMonDom5,673 netMonDom5,704 netMonDom5,795 netMonDom5,847 netMonDom5,880 refSeqComposite,234 refSeqComposite,244 refSeqComposite,1000 rmsk,299 rmsk,341 transMapEnsemblV5,56 transMapEnsemblV5,64 transMapEnsemblV5,187 transMapEnsemblV5,240 transMapEnsemblV5,245 transMapEnsemblV5,265 transMapEnsemblV5,285 transMapEnsemblV5,317 transMapEnsemblV5,650 transMapEstV5,156 transMapEstV5,209 transMapEstV5,214 transMapEstV5,234 transMapEstV5,254 transMapEstV5,286 transMapEstV5,619 transMapRefSeqV5,156 transMapRefSeqV5,209 transMapRefSeqV5,214 transMapRefSeqV5,234 transMapRefSeqV5,254 transMapRefSeqV5,286 transMapRefSeqV5,619 transMapRnaV5,156 transMapRnaV5,209 transMapRnaV5,214 transMapRnaV5,234 transMapRnaV5,254 transMapRnaV5,286 transMapRnaV5,619 transMapV5,70 transMapV5,262 transMapV5,315 transMapV5,320 transMapV5,340 transMapV5,360 transMapV5,392 transMapV5,725 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 useful chainBosTau7,286 chainBosTau7,486 chainHg19,284 chainHg19,483 chainMm10,284 chainMm10,483 chainMonDom5,284 chainMonDom5,483 chainNetBosTau7,289 chainNetBosTau7,489 chainNetHg19,287 chainNetHg19,486 chainNetMm10,287 chainNetMm10,486 chainNetMonDom5,287 chainNetMonDom5,486 microsat,20 netBosTau7,286 netBosTau7,486 netHg19,284 netHg19,483 netMm10,284 netMm10,483 netMonDom5,284 netMonDom5,483 user mrna,339 transMapEnsemblV5,121 transMapEstV5,90 transMapRefSeqV5,90 transMapRnaV5,90 transMapV5,196 users refSeqComposite,826 uniprot,406 uniprot,684 xenoRefGene,150 uses HLTOGAannotvHg38v1,45 HLTOGAannotvHg38v1,87 rmsk,79 using HLTOGAannotvHg38v1,6 augustusGene,294 chainBosTau7,77 chainBosTau7,612 chainBosTau7,772 chainHg19,75 chainHg19,609 chainHg19,769 chainMm10,75 chainMm10,609 chainMm10,769 chainMonDom5,75 chainMonDom5,609 chainMonDom5,769 chainNetBosTau7,80 chainNetBosTau7,615 chainNetBosTau7,775 chainNetHg19,78 chainNetHg19,612 chainNetHg19,772 chainNetMm10,78 chainNetMm10,612 chainNetMm10,772 chainNetMonDom5,78 chainNetMonDom5,612 chainNetMonDom5,772 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 microsat,90 mrna,396 nestedRepeats,43 nestedRepeats,104 nestedRepeats,283 netBosTau7,77 netBosTau7,612 netBosTau7,772 netHg19,75 netHg19,609 netHg19,769 netMm10,75 netMm10,609 netMm10,769 netMonDom5,75 netMonDom5,609 netMonDom5,769 refSeqComposite,79 refSeqComposite,1156 refSeqComposite,1206 refSeqComposite,1219 refSeqComposite,1237 refSeqComposite,1309 refSeqComposite,1507 refSeqComposite,1592 refSeqComposite,1623 rmsk,15 rmsk,290 transMapEnsemblV5,75 transMapEnsemblV5,564 transMapEnsemblV5,613 transMapEnsemblV5,765 transMapEstV5,44 transMapEstV5,533 transMapEstV5,582 transMapEstV5,734 transMapRefSeqV5,44 transMapRefSeqV5,533 transMapRefSeqV5,582 transMapRefSeqV5,734 transMapRnaV5,44 transMapRnaV5,533 transMapRnaV5,582 transMapRnaV5,734 transMapV5,43 transMapV5,82 transMapV5,125 transMapV5,136 transMapV5,143 transMapV5,639 transMapV5,688 transMapV5,840 uniprot,217 uniprot,722 uniprot,1526 xenoRefGene,227 ustat windowmaskerSdust,66 usually nestedRepeats,192 transMapEnsemblV5,505 transMapEstV5,474 transMapRefSeqV5,474 transMapRnaV5,474 transMapV5,580 utilities refSeqComposite,1530 refSeqComposite,1599 utility refSeqComposite,1595 refSeqComposite,1607 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 utr transMapV5,165 v HLTOGAannotvHg38v1,343 v3.1 augustusGene,7 v4 transMapEnsemblV5,667 transMapEstV5,636 transMapRefSeqV5,636 transMapRnaV5,636 v5 transMapV5,2 transMapV5,742 valid mrna,160 validate refSeqComposite,829 xenoRefGene,153 validation genscan,107 value mrna,231 variant uniprot,2026 variants refSeqComposite,951 uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation microsat,7 nestedRepeats,11 refSeqComposite,1078 rmsk,6 simpleRepeat,8 uniprot,438 windowmaskerSdust,9 variety gc5BaseBw,45 various uniprot,50 vb chainBosTau7,1036 chainHg19,1033 chainMm10,1033 chainMonDom5,1033 chainNetBosTau7,1039 chainNetHg19,1036 chainNetMm10,1036 chainNetMonDom5,1036 netBosTau7,1036 netHg19,1033 netMm10,1033 netMonDom5,1033 version augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 refSeqComposite,1135 refSeqComposite,1570 rmsk,58 transMapEnsemblV5,8 transMapEstV5,6 transMapRefSeqV5,7 transMapRnaV5,7 transMapV5,5 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 nestedRepeats,251 nestedRepeats,267 refSeqComposite,1342 refSeqComposite,1696 uniprot,1655 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 transMapEnsemblV5,31 transMapEnsemblV5,159 transMapEnsemblV5,192 transMapEstV5,29 transMapEstV5,128 transMapEstV5,161 transMapRefSeqV5,29 transMapRefSeqV5,128 transMapRefSeqV5,161 transMapRnaV5,29 transMapRnaV5,128 transMapRnaV5,161 transMapV5,28 transMapV5,114 transMapV5,234 transMapV5,267 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 very uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via transMapEnsemblV5,328 transMapEstV5,297 transMapRefSeqV5,297 transMapRnaV5,297 transMapV5,403 uniprot,1293 view chainBosTau7,463 chainHg19,460 chainMm10,460 chainMonDom5,460 chainNetBosTau7,466 chainNetHg19,463 chainNetMm10,463 chainNetMonDom5,463 cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 mrna,156 netBosTau7,463 netHg19,460 netMm10,460 netMonDom5,460 viewed gold,80 visibility cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 visible cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 uniprot,147 visit refSeqComposite,104 vs HLTOGAannotvHg38v1,2 w chainBosTau7,1038 chainBosTau7,1058 chainBosTau7,1106 chainHg19,1035 chainHg19,1055 chainHg19,1103 chainMm10,1035 chainMm10,1055 chainMm10,1103 chainMonDom5,1035 chainMonDom5,1055 chainMonDom5,1103 chainNetBosTau7,1041 chainNetBosTau7,1061 chainNetBosTau7,1109 chainNetHg19,1038 chainNetHg19,1058 chainNetHg19,1106 chainNetMm10,1038 chainNetMm10,1058 chainNetMm10,1106 chainNetMonDom5,1038 chainNetMonDom5,1058 chainNetMonDom5,1106 gold,149 netBosTau7,1038 netBosTau7,1058 netBosTau7,1106 netHg19,1035 netHg19,1055 netHg19,1103 netMm10,1035 netMm10,1055 netMm10,1103 netMonDom5,1035 netMonDom5,1055 netMonDom5,1103 waack augustusGene,318 want uniprot,690 was HLTOGAannotvHg38v1,317 augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 chainBosTau7,657 chainBosTau7,675 chainBosTau7,796 chainBosTau7,841 chainBosTau7,849 chainBosTau7,869 chainBosTau7,881 chainBosTau7,906 chainBosTau7,924 chainBosTau7,959 chainHg19,654 chainHg19,672 chainHg19,793 chainHg19,838 chainHg19,846 chainHg19,866 chainHg19,878 chainHg19,903 chainHg19,921 chainHg19,956 chainMm10,654 chainMm10,672 chainMm10,793 chainMm10,838 chainMm10,846 chainMm10,866 chainMm10,878 chainMm10,903 chainMm10,921 chainMm10,956 chainMonDom5,654 chainMonDom5,672 chainMonDom5,793 chainMonDom5,838 chainMonDom5,846 chainMonDom5,866 chainMonDom5,878 chainMonDom5,903 chainMonDom5,921 chainMonDom5,956 chainNetBosTau7,660 chainNetBosTau7,678 chainNetBosTau7,799 chainNetBosTau7,844 chainNetBosTau7,852 chainNetBosTau7,872 chainNetBosTau7,884 chainNetBosTau7,909 chainNetBosTau7,927 chainNetBosTau7,962 chainNetHg19,657 chainNetHg19,675 chainNetHg19,796 chainNetHg19,841 chainNetHg19,849 chainNetHg19,869 chainNetHg19,881 chainNetHg19,906 chainNetHg19,924 chainNetHg19,959 chainNetMm10,657 chainNetMm10,675 chainNetMm10,796 chainNetMm10,841 chainNetMm10,849 chainNetMm10,869 chainNetMm10,881 chainNetMm10,906 chainNetMm10,924 chainNetMm10,959 chainNetMonDom5,657 chainNetMonDom5,675 chainNetMonDom5,796 chainNetMonDom5,841 chainNetMonDom5,849 chainNetMonDom5,869 chainNetMonDom5,881 chainNetMonDom5,906 chainNetMonDom5,924 chainNetMonDom5,959 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 microsat,108 mrna,415 mrna,445 netBosTau7,657 netBosTau7,675 netBosTau7,796 netBosTau7,841 netBosTau7,849 netBosTau7,869 netBosTau7,881 netBosTau7,906 netBosTau7,924 netBosTau7,959 netHg19,654 netHg19,672 netHg19,793 netHg19,838 netHg19,846 netHg19,866 netHg19,878 netHg19,903 netHg19,921 netHg19,956 netMm10,654 netMm10,672 netMm10,793 netMm10,838 netMm10,846 netMm10,866 netMm10,878 netMm10,903 netMm10,921 netMm10,956 netMonDom5,654 netMonDom5,672 netMonDom5,793 netMonDom5,838 netMonDom5,846 netMonDom5,866 netMonDom5,878 netMonDom5,903 netMonDom5,921 netMonDom5,956 refSeqComposite,503 refSeqComposite,1264 refSeqComposite,1714 rmsk,12 rmsk,262 simpleRepeat,68 transMapEnsemblV5,222 transMapEnsemblV5,239 transMapEnsemblV5,284 transMapEnsemblV5,316 transMapEnsemblV5,679 transMapEstV5,191 transMapEstV5,208 transMapEstV5,253 transMapEstV5,285 transMapEstV5,648 transMapRefSeqV5,191 transMapRefSeqV5,208 transMapRefSeqV5,253 transMapRefSeqV5,285 transMapRefSeqV5,648 transMapRnaV5,191 transMapRnaV5,208 transMapRnaV5,253 transMapRnaV5,285 transMapRnaV5,648 transMapV5,297 transMapV5,314 transMapV5,359 transMapV5,391 transMapV5,754 ucscToINSDC,48 ucscToRefSeq,42 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 windowmaskerSdust,52 windowmaskerSdust,78 xenoRefGene,254 xenoRefGene,283 way transMapEnsemblV5,590 transMapEstV5,559 transMapRefSeqV5,559 transMapRnaV5,559 transMapV5,665 uniprot,1459 ways gc5BaseBw,47 refSeqComposite,1303 we refSeqComposite,77 rmsk,122 uniprot,1224 uniprot,1453 uniprot,1859 weaker HLTOGAannotvHg38v1,198 webb chainBosTau7,938 chainBosTau7,975 chainHg19,935 chainHg19,972 chainMm10,935 chainMm10,972 chainMonDom5,935 chainMonDom5,972 chainNetBosTau7,941 chainNetBosTau7,978 chainNetHg19,938 chainNetHg19,975 chainNetMm10,938 chainNetMm10,975 chainNetMonDom5,938 chainNetMonDom5,975 netBosTau7,938 netBosTau7,975 netHg19,935 netHg19,972 netMm10,935 netMm10,972 netMonDom5,935 netMonDom5,972 weekly xenoRefGene,42 well augustusGene,78 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 genscan,36 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 chainBosTau7,585 chainBosTau7,593 chainBosTau7,600 chainBosTau7,607 chainBosTau7,619 chainBosTau7,693 chainBosTau7,767 chainBosTau7,947 chainBosTau7,991 chainBosTau7,1005 chainHg19,582 chainHg19,590 chainHg19,597 chainHg19,604 chainHg19,616 chainHg19,690 chainHg19,764 chainHg19,944 chainHg19,988 chainHg19,1002 chainMm10,582 chainMm10,590 chainMm10,597 chainMm10,604 chainMm10,616 chainMm10,690 chainMm10,764 chainMm10,944 chainMm10,988 chainMm10,1002 chainMonDom5,582 chainMonDom5,590 chainMonDom5,597 chainMonDom5,604 chainMonDom5,616 chainMonDom5,690 chainMonDom5,764 chainMonDom5,944 chainMonDom5,988 chainMonDom5,1002 chainNetBosTau7,588 chainNetBosTau7,596 chainNetBosTau7,603 chainNetBosTau7,610 chainNetBosTau7,622 chainNetBosTau7,696 chainNetBosTau7,770 chainNetBosTau7,950 chainNetBosTau7,994 chainNetBosTau7,1008 chainNetHg19,585 chainNetHg19,593 chainNetHg19,600 chainNetHg19,607 chainNetHg19,619 chainNetHg19,693 chainNetHg19,767 chainNetHg19,947 chainNetHg19,991 chainNetHg19,1005 chainNetMm10,585 chainNetMm10,593 chainNetMm10,600 chainNetMm10,607 chainNetMm10,619 chainNetMm10,693 chainNetMm10,767 chainNetMm10,947 chainNetMm10,991 chainNetMm10,1005 chainNetMonDom5,585 chainNetMonDom5,593 chainNetMonDom5,600 chainNetMonDom5,607 chainNetMonDom5,619 chainNetMonDom5,693 chainNetMonDom5,767 chainNetMonDom5,947 chainNetMonDom5,991 chainNetMonDom5,1005 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 gc5BaseBw,79 mrna,391 mrna,439 netBosTau7,585 netBosTau7,593 netBosTau7,600 netBosTau7,607 netBosTau7,619 netBosTau7,693 netBosTau7,767 netBosTau7,947 netBosTau7,991 netBosTau7,1005 netHg19,582 netHg19,590 netHg19,597 netHg19,604 netHg19,616 netHg19,690 netHg19,764 netHg19,944 netHg19,988 netHg19,1002 netMm10,582 netMm10,590 netMm10,597 netMm10,604 netMm10,616 netMm10,690 netMm10,764 netMm10,944 netMm10,988 netMm10,1002 netMonDom5,582 netMonDom5,590 netMonDom5,597 netMonDom5,604 netMonDom5,616 netMonDom5,690 netMonDom5,764 netMonDom5,944 netMonDom5,988 netMonDom5,1002 refSeqComposite,101 refSeqComposite,249 refSeqComposite,358 refSeqComposite,420 refSeqComposite,1152 refSeqComposite,1165 refSeqComposite,1230 refSeqComposite,1247 refSeqComposite,1288 transMapEnsemblV5,156 transMapEnsemblV5,186 transMapEnsemblV5,213 transMapEnsemblV5,244 transMapEnsemblV5,250 transMapEnsemblV5,264 transMapEnsemblV5,351 transMapEnsemblV5,382 transMapEnsemblV5,395 transMapEstV5,125 transMapEstV5,155 transMapEstV5,182 transMapEstV5,213 transMapEstV5,219 transMapEstV5,233 transMapEstV5,320 transMapEstV5,351 transMapEstV5,364 transMapRefSeqV5,125 transMapRefSeqV5,155 transMapRefSeqV5,182 transMapRefSeqV5,213 transMapRefSeqV5,219 transMapRefSeqV5,233 transMapRefSeqV5,320 transMapRefSeqV5,351 transMapRefSeqV5,364 transMapRnaV5,125 transMapRnaV5,155 transMapRnaV5,182 transMapRnaV5,213 transMapRnaV5,219 transMapRnaV5,233 transMapRnaV5,320 transMapRnaV5,351 transMapRnaV5,364 transMapV5,116 transMapV5,129 transMapV5,231 transMapV5,261 transMapV5,288 transMapV5,319 transMapV5,325 transMapV5,339 transMapV5,426 transMapV5,457 transMapV5,470 ucscToINSDC,35 ucscToRefSeq,29 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoRefGene,220 xenoRefGene,237 xenoRefGene,278 wget uniprot,1903 uniprot,1913 wheeler mrna,500 when augustusGene,188 augustusGene,238 chainBosTau7,414 chainHg19,411 chainMm10,411 chainMonDom5,411 chainNetBosTau7,417 chainNetHg19,414 chainNetMm10,414 chainNetMonDom5,414 mrna,92 mrna,102 mrna,400 netBosTau7,414 netHg19,411 netMm10,411 netMonDom5,411 refSeqComposite,1092 refSeqComposite,1249 transMapEnsemblV5,468 transMapEstV5,437 transMapRefSeqV5,437 transMapRnaV5,437 transMapV5,543 uniprot,951 uniprot,1202 uniprot,1632 xenoRefGene,239 where chainBosTau7,196 chainHg19,194 chainMm10,194 chainMonDom5,194 chainNetBosTau7,199 chainNetHg19,197 chainNetMm10,197 chainNetMonDom5,197 cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 gold,95 netBosTau7,196 netHg19,194 netMm10,194 netMonDom5,194 transMapEnsemblV5,272 transMapEnsemblV5,374 transMapEnsemblV5,423 transMapEnsemblV5,511 transMapEstV5,241 transMapEstV5,343 transMapEstV5,392 transMapEstV5,480 transMapRefSeqV5,241 transMapRefSeqV5,343 transMapRefSeqV5,392 transMapRefSeqV5,480 transMapRnaV5,241 transMapRnaV5,343 transMapRnaV5,392 transMapRnaV5,480 transMapV5,347 transMapV5,449 transMapV5,498 transMapV5,586 uniprot,1192 whether chainBosTau7,865 chainHg19,862 chainMm10,862 chainMonDom5,862 chainNetBosTau7,868 chainNetHg19,865 chainNetMm10,865 chainNetMonDom5,865 netBosTau7,865 netHg19,862 netMm10,862 netMonDom5,862 which augustusGene,159 augustusGene,227 chainBosTau7,331 chainBosTau7,623 chainBosTau7,830 chainHg19,328 chainHg19,620 chainHg19,827 chainMm10,328 chainMm10,620 chainMm10,827 chainMonDom5,328 chainMonDom5,620 chainMonDom5,827 chainNetBosTau7,334 chainNetBosTau7,626 chainNetBosTau7,833 chainNetHg19,331 chainNetHg19,623 chainNetHg19,830 chainNetMm10,331 chainNetMm10,623 chainNetMm10,830 chainNetMonDom5,331 chainNetMonDom5,623 chainNetMonDom5,830 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 mrna,179 nestedRepeats,31 nestedRepeats,87 netBosTau7,331 netBosTau7,623 netBosTau7,830 netHg19,328 netHg19,620 netHg19,827 netMm10,328 netMm10,620 netMm10,827 netMonDom5,328 netMonDom5,620 netMonDom5,827 refSeqComposite,47 refSeqComposite,262 refSeqComposite,1483 refSeqComposite,1511 rmsk,21 rmsk,64 rmsk,158 rmsk,171 rmsk,197 simpleRepeat,27 transMapEnsemblV5,617 transMapEstV5,586 transMapRefSeqV5,586 transMapRnaV5,586 transMapV5,145 transMapV5,692 uniprot,158 uniprot,1380 uniprot,1768 while chainBosTau7,220 chainHg19,218 chainMm10,218 chainMonDom5,218 chainNetBosTau7,223 chainNetHg19,221 chainNetMm10,221 chainNetMonDom5,221 netBosTau7,220 netHg19,218 netMm10,218 netMonDom5,218 white chainBosTau7,74 chainBosTau7,101 chainBosTau7,159 chainBosTau7,206 chainBosTau7,273 chainBosTau7,281 chainBosTau7,582 chainBosTau7,635 chainHg19,72 chainHg19,99 chainHg19,157 chainHg19,204 chainHg19,271 chainHg19,279 chainHg19,579 chainHg19,632 chainMm10,72 chainMm10,99 chainMm10,157 chainMm10,204 chainMm10,271 chainMm10,279 chainMm10,579 chainMm10,632 chainMonDom5,72 chainMonDom5,99 chainMonDom5,157 chainMonDom5,204 chainMonDom5,271 chainMonDom5,279 chainMonDom5,579 chainMonDom5,632 chainNetBosTau7,77 chainNetBosTau7,104 chainNetBosTau7,162 chainNetBosTau7,209 chainNetBosTau7,276 chainNetBosTau7,284 chainNetBosTau7,585 chainNetBosTau7,638 chainNetHg19,75 chainNetHg19,102 chainNetHg19,160 chainNetHg19,207 chainNetHg19,274 chainNetHg19,282 chainNetHg19,582 chainNetHg19,635 chainNetMm10,75 chainNetMm10,102 chainNetMm10,160 chainNetMm10,207 chainNetMm10,274 chainNetMm10,282 chainNetMm10,582 chainNetMm10,635 chainNetMonDom5,75 chainNetMonDom5,102 chainNetMonDom5,160 chainNetMonDom5,207 chainNetMonDom5,274 chainNetMonDom5,282 chainNetMonDom5,582 chainNetMonDom5,635 gap,17 gap,105 gold,19 mrna,1 mrna,4 mrna,19 mrna,388 netBosTau7,74 netBosTau7,101 netBosTau7,159 netBosTau7,206 netBosTau7,273 netBosTau7,281 netBosTau7,582 netBosTau7,635 netHg19,72 netHg19,99 netHg19,157 netHg19,204 netHg19,271 netHg19,279 netHg19,579 netHg19,632 netMm10,72 netMm10,99 netMm10,157 netMm10,204 netMm10,271 netMm10,279 netMm10,579 netMm10,632 netMonDom5,72 netMonDom5,99 netMonDom5,157 netMonDom5,204 netMonDom5,271 netMonDom5,279 netMonDom5,579 netMonDom5,632 refSeqComposite,19 refSeqComposite,442 refSeqComposite,464 refSeqComposite,498 refSeqComposite,1234 transMapEnsemblV5,90 transMapEnsemblV5,203 transMapEnsemblV5,334 transMapEstV5,59 transMapEstV5,172 transMapEstV5,303 transMapRefSeqV5,59 transMapRefSeqV5,172 transMapRefSeqV5,303 transMapRnaV5,59 transMapRnaV5,172 transMapRnaV5,303 transMapV5,60 transMapV5,278 transMapV5,409 xenoRefGene,24 xenoRefGene,224 whole HLTOGAannotvHg38v1,63 chainBosTau7,471 chainHg19,468 chainMm10,468 chainMonDom5,468 chainNetBosTau7,474 chainNetHg19,471 chainNetMm10,471 chainNetMonDom5,471 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 gold,150 netBosTau7,471 netHg19,468 netMm10,468 netMonDom5,468 refSeqComposite,1499 transMapEnsemblV5,607 transMapEstV5,576 transMapRefSeqV5,576 transMapRnaV5,576 transMapV5,682 whose refSeqComposite,221 refSeqComposite,350 refSeqComposite,967 transMapEnsemblV5,219 transMapEstV5,188 transMapRefSeqV5,188 transMapRnaV5,188 transMapV5,294 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 wildcards mrna,217 will mrna,250 mrna,268 mrna,297 mrna,314 rmsk,277 rmsk,283 transMapEnsemblV5,61 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 window-based windowmaskerSdust,101 windowmasker windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5BaseBw,7 gc5BaseBw,28 wish mrna,181 refSeqComposite,173 xenoRefGene,207 with HLTOGAannotvHg38v1,359 augustusGene,127 augustusGene,322 chainBosTau7,43 chainBosTau7,211 chainBosTau7,222 chainBosTau7,595 chainBosTau7,708 chainBosTau7,784 chainBosTau7,908 chainBosTau7,940 chainBosTau7,972 chainBosTau7,1109 chainHg19,42 chainHg19,209 chainHg19,220 chainHg19,592 chainHg19,705 chainHg19,781 chainHg19,905 chainHg19,937 chainHg19,969 chainHg19,1106 chainMm10,42 chainMm10,209 chainMm10,220 chainMm10,592 chainMm10,705 chainMm10,781 chainMm10,905 chainMm10,937 chainMm10,969 chainMm10,1106 chainMonDom5,42 chainMonDom5,209 chainMonDom5,220 chainMonDom5,592 chainMonDom5,705 chainMonDom5,781 chainMonDom5,905 chainMonDom5,937 chainMonDom5,969 chainMonDom5,1106 chainNetBosTau7,46 chainNetBosTau7,214 chainNetBosTau7,225 chainNetBosTau7,598 chainNetBosTau7,711 chainNetBosTau7,787 chainNetBosTau7,911 chainNetBosTau7,943 chainNetBosTau7,975 chainNetBosTau7,1112 chainNetHg19,45 chainNetHg19,212 chainNetHg19,223 chainNetHg19,595 chainNetHg19,708 chainNetHg19,784 chainNetHg19,908 chainNetHg19,940 chainNetHg19,972 chainNetHg19,1109 chainNetMm10,45 chainNetMm10,212 chainNetMm10,223 chainNetMm10,595 chainNetMm10,708 chainNetMm10,784 chainNetMm10,908 chainNetMm10,940 chainNetMm10,972 chainNetMm10,1109 chainNetMonDom5,45 chainNetMonDom5,212 chainNetMonDom5,223 chainNetMonDom5,595 chainNetMonDom5,708 chainNetMonDom5,784 chainNetMonDom5,908 chainNetMonDom5,940 chainNetMonDom5,972 chainNetMonDom5,1109 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 gap,53 gc5BaseBw,35 gold,52 gold,142 microsat,69 microsat,76 mrna,435 nestedRepeats,133 netBosTau7,43 netBosTau7,211 netBosTau7,222 netBosTau7,595 netBosTau7,708 netBosTau7,784 netBosTau7,908 netBosTau7,940 netBosTau7,972 netBosTau7,1109 netHg19,42 netHg19,209 netHg19,220 netHg19,592 netHg19,705 netHg19,781 netHg19,905 netHg19,937 netHg19,969 netHg19,1106 netMm10,42 netMm10,209 netMm10,220 netMm10,592 netMm10,705 netMm10,781 netMm10,905 netMm10,937 netMm10,969 netMm10,1106 netMonDom5,42 netMonDom5,209 netMonDom5,220 netMonDom5,592 netMonDom5,705 netMonDom5,781 netMonDom5,905 netMonDom5,937 netMonDom5,969 netMonDom5,1106 refSeqComposite,224 refSeqComposite,353 refSeqComposite,491 refSeqComposite,954 refSeqComposite,983 refSeqComposite,1042 refSeqComposite,1069 refSeqComposite,1095 refSeqComposite,1134 refSeqComposite,1240 refSeqComposite,1284 refSeqComposite,1402 rmsk,111 rmsk,225 simpleRepeat,52 transMapEnsemblV5,51 transMapEnsemblV5,183 transMapEnsemblV5,252 transMapEnsemblV5,353 transMapEnsemblV5,355 transMapEnsemblV5,584 transMapEstV5,152 transMapEstV5,221 transMapEstV5,322 transMapEstV5,324 transMapEstV5,553 transMapRefSeqV5,152 transMapRefSeqV5,221 transMapRefSeqV5,322 transMapRefSeqV5,324 transMapRefSeqV5,553 transMapRnaV5,152 transMapRnaV5,221 transMapRnaV5,322 transMapRnaV5,324 transMapRnaV5,553 transMapV5,258 transMapV5,327 transMapV5,428 transMapV5,430 transMapV5,659 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 windowmaskerSdust,54 xenoRefGene,230 xenoRefGene,274 within gold,117 mrna,85 mrna,424 refSeqComposite,725 refSeqComposite,1273 simpleRepeat,37 transMapEnsemblV5,655 transMapEstV5,624 transMapRefSeqV5,624 transMapRnaV5,624 transMapV5,730 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoRefGene,84 xenoRefGene,263 without uniprot,139 wj chainBosTau7,1052 chainBosTau7,1094 chainHg19,1049 chainHg19,1091 chainMm10,1049 chainMm10,1091 chainMonDom5,1049 chainMonDom5,1091 chainNetBosTau7,1055 chainNetBosTau7,1097 chainNetHg19,1052 chainNetHg19,1094 chainNetMm10,1052 chainNetMm10,1094 chainNetMonDom5,1052 chainNetMonDom5,1094 mrna,519 netBosTau7,1052 netBosTau7,1094 netHg19,1049 netHg19,1091 netMm10,1049 netMm10,1091 netMonDom5,1049 netMonDom5,1091 refSeqComposite,1733 xenoRefGene,304 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 words uniprot,1201 worldwide mrna,462 refSeqComposite,1723 transMapEnsemblV5,701 transMapEstV5,670 transMapRefSeqV5,670 transMapRnaV5,670 transMapV5,776 xenoRefGene,294 would cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 wrench refSeqComposite,753 written genscan,19 microsat,109 simpleRepeat,69 www.repeatmasker.org nestedRepeats,333 rmsk,356 x uniprot,1923 xm refSeqComposite,354 xm_ ncbiRefSeq,10 ncbiRefSeqOther,10 ncbiRefSeqPredicted,8 xml uniprot,1510 xr refSeqComposite,356 xr_ ncbiRefSeq,12 ncbiRefSeqOther,11 ncbiRefSeqPredicted,10 yap chainBosTau7,1035 chainHg19,1032 chainMm10,1032 chainMonDom5,1032 chainNetBosTau7,1038 chainNetHg19,1035 chainNetMm10,1035 chainNetMonDom5,1035 netBosTau7,1035 netHg19,1032 netMm10,1032 netMonDom5,1032 years uniprot,933 yet refSeqComposite,676 refSeqComposite,701 yip uniprot,2010 yl uniprot,2011 you mrna,180 refSeqComposite,172 refSeqComposite,1352 refSeqComposite,1460 refSeqComposite,1544 refSeqComposite,1564 refSeqComposite,1634 rmsk,115 uniprot,655 uniprot,689 uniprot,1443 xenoRefGene,206 younger nestedRepeats,94 your refSeqComposite,1526 refSeqComposite,1639 transMapEnsemblV5,632 transMapEstV5,601 transMapRefSeqV5,601 transMapRnaV5,601 transMapV5,707 uniprot,1783 yp refSeqComposite,229 refSeqComposite,232 refSeqComposite,242 yp_ ncbiRefSeq,14 ncbiRefSeqCurated,12 ncbiRefSeqOther,14 z chainBosTau7,1098 chainHg19,1095 chainMm10,1095 chainMonDom5,1095 chainNetBosTau7,1101 chainNetHg19,1098 chainNetMm10,1098 chainNetMonDom5,1098 netBosTau7,1098 netHg19,1095 netMm10,1095 netMonDom5,1095 zebrafish augustusGene,202 augustusGene,278 zhang chainBosTau7,936 chainBosTau7,1097 chainHg19,933 chainHg19,1094 chainMm10,933 chainMm10,1094 chainMonDom5,933 chainMonDom5,1094 chainNetBosTau7,939 chainNetBosTau7,1100 chainNetHg19,936 chainNetHg19,1097 chainNetMm10,936 chainNetMm10,1097 chainNetMonDom5,936 chainNetMonDom5,1097 netBosTau7,936 netBosTau7,1097 netHg19,933 netHg19,1094 netMm10,933 netMm10,1094 netMonDom5,933 netMonDom5,1094 zheng chainBosTau7,935 chainHg19,932 chainMm10,932 chainMonDom5,932 chainNetBosTau7,938 chainNetHg19,935 chainNetMm10,935 chainNetMonDom5,935 netBosTau7,935 netHg19,932 netMm10,932 netMonDom5,932 zhu transMapEnsemblV5,787 transMapEstV5,756 transMapRefSeqV5,756 transMapRnaV5,756 transMapV5,862 zinc uniprot,326 zoomed-in genscan,103