##maf version=1 scoring=roast.v3.3 a score=28514.000000 s hg38.chr5_GL000208v1_random 6874 499 + 92689 tcaaaactactctatcaaaaggaagtttcaactctgtgagttgaatgcacacatcccaaggaagtttctgagaatgcttctgtcaagtttttaatgtgaagatatacccgtttccaatgaaggacaaaaagcggtcaaaatatccacttgcagattctacaaaaagagtgtttcaaaactgctctagcaaaagaaatgtttaacagtgtgagttgaatgcaaacatcacaaagtattttctgagaatgtttctgtctagtttttaggtgaagatatttcctttt-ccaccatagccctcaaagtgctccaaatgtccacttgcagattctacattaagagagtttcaaaacttctctgtcaaaagacaggt-taactctgtgagttgaatgtacacatcacaaagtagtttttgagaatgattctgtctagtttttaggtgaagatattcccgtttccaacgaaggcttcaaatcactccaattatccacttgcaggtcct s gorGor3.chr19 31568312 500 - 56181278 tcaaatgtgctcaacaaaaaggagggtttaactctgtaagttgaatgcacacatcagaaggtagtttctgagaatccttctgtctagttttta-tgtgaagatattctcgttttcaacgaagggttcaaagcacgcaaaatatccacttgcatattctacaaaaagagtgtttcaaaactgcttcttcaaaaggaaagtccaattctgtgagatgaatgcacacaacacaaaggagtttctgagaatgcttctgtcttatttttatgtggagattttccctttttccaaagaaggctgcaaaccattcaaaatatccacttgaagattctacaaaaaggcagtgtcaaaactgctccatcgaaaggaatgtgcagctctgtgagttgaatgcacacatcacaaagaactttctgagaatgcatgtggctagtttttatgtgaagatatacccgtttccaatgaagacttcaacgtactcaaattatccacttggagattct i gorGor3.chr19 N 0 C 0 a score=80303.000000 s hg38.chr5_GL000208v1_random 7373 508 + 92689 acaaaaagagtttttcaaagctgttctatcaaaagaaaggttaaattctgtgagttgtaagcacacaacactatctggtttctcagaattcttctgtctagtttttatttgaagatatttctttttcttccatagacctcaaagcgctccaaatatccaattgcagattcaactaaaagagtgtttcaaaacagctctatgaaaagaaaggtccaactctgtgagttgaatgcaaacatcacaaa-gaagtttctgagaatgcttctgtctggtatttatgtgatgatattcccttttccaatgaattcctcaaagcagtcaaaatatccacttggagattctacaaaa-atagtgtttcaaaactgctctatcaaaagaaaggttaaaatatgtgcgttgaatgcacacatcagaaactagattatgagaatgcttctttctagtttatacataaagaaatttccctttctaccagaggacttaaagggatccaaatattcacgtgtag s panPan1.JH649541 9148 507 - 20639 acaaacagagtgtttcctaactgctctatgaaaaggaaggttaaactctgtgagctgaacgcACAAATCATTAAGTTGCTTCAGAGaattattctgtctagtttt-atacgaagatatttccttttctaccattggcctcaaatcgcttgaaatctccaattgcaaaatccacaaaaagagagtttcaaatctgctctgtctaaggaaaggttcaactctgtgagctgaataaACACAACACAAAAGAAGTTACTGAAAATTCTTCTTTCtggcatt-atatgaagaaat-cccgtttccaacgaaggcctcaaagaggtccaaatatacacttgcagattttacaaaacagagtgttttcaaactgctgtatgaaaagaaaggttaaaattcGTCAGGAggatgtacacatcacaaagtagtttttgagaatgattctgtctagtttttaggtgaagatattcccgtctccaacgaaggcttcaaatcactccaattatccacttgcag i panPan1.JH649541 N 0 C 0 s gorGor3.chr19 31568812 508 - 56181278 acaaaaagagtgtttcaaaactgttctaacaaagggaaggttcaactctgtgagttgaatgcacacatcacaaggaagtttctgaaaatgcttctgtctagtttttatgtgaatatataaccatttccaacaaaggcttcagtgcactctaaatatccccttacagatactacataaatagtgtttcaaaactgctctatcaaaaggaaggttcaactctgtgagtttaatgcacacatcacaag-gaagtttctgagaatgcctctgtctagtttttatgtgaatatattcccttttccaacgaaggcttcaaagcactccaaatatccacttgcagatactacaaaa-agattgtttcaacactgctctatcaaaaagaaggttcaactctgtgagttgaatgaacacatcacaaggaagtttctgagaatgcttctgtctagttttgatgtgaagatattcccatttccaatgaaggacacaaagcgttccaaatatccaaatgcag i gorGor3.chr19 C 0 I 11 a score=684.000000 s hg38.chr5_GL000208v1_random 7881 10 + 92689 attctacaaa s panPan1.JH649541 9655 10 - 20639 gtcctacaaa i panPan1.JH649541 C 0 C 0 e gorGor3.chr19 31569320 11 - 56181278 I a score=169229.000000 s hg38.chr5_GL000208v1_random 7891 710 + 92689 aagagtgtttcaaaactgctctatcaaaaggagtgttcaactctgtgatttgaatgcaatcatcacgaagtagtttctcagaatccttctgtctactttttaagtgaagatattcccgtttccaaagaaggcttcaaagcactccaaatatccgcttgcatattctacaaaaagagtgcttcaaatctgctctatcaaaaggaaggttcatctctataagttgaatgcacacatcacaaagaagttcctgagaatgcttctgtctattttttacgtggagatattcccgtttccaatgaaggcttctctccaccagaaatatccagttgcagattctacaaaaagagtgtttcaCTGTGAAGCCAGAAACTACTAACTGGGAACGAGAATTTCCATTTATGTATAGGTCTTTTGGCTAATATCAAATGTATAGAAAATCATTCTAAATTTTAAATATTAGTTCTATTTTTCAGACATAGTTGGTAATCTATATAAATAGCTTCGGGAATGCAGCTTAAGCTGTATTAGTAGTTTAAGAAATAAGATAACCAGACATACAGGCAAAATGTTTGCAAAAGAATATTTTTGTTTGCATCATTTTTCATACTGACAAAATTTGGATACAAAGTAAAATTCAAACAAGGAGAAAATGCATGAATGTATTATGATTAATAAAATACACACAATTAAAAATATTCACAAAGAACTTA s panPan1.JH649541 9665 709 - 20639 aagagtttttcaaagctgttctatcaaaagaaaggttaaattcgGTGAGTTGTAAGCACACAACACAATCtggtttctcagaatgcttctgcctagtttttatttgaagatatttctttttcttccatagacctcaaagcgctccaaatatccaattgcagattctactaaaagagtgtttcaaaacaggtctatgaaaagaaaggtccAACTTTGTGAGTTTAATGGAaagatcacaaagaagttcctgagaatgcttctgtctattttttaggtggagatattcccgtttccaatgaaggcttcTCTCCACCAGaaatatccagttgcagattctacaaaaagagtctttCATTGTGAAGGCAGAAACTATTAACTGGGAATGAGAATTTCCATTTATGTATAGGTCTTTTGGCTAATATCAAATGTATAGAAAATCATTCTAAACTTTAAATATTAGCTCTATTTTTCAGACATAGTTGGTAATCTATATAAATAGCTTCAGGAATGCAGCTTAAGCTGTATTAGTAGTTTAAGAAATAAGATAACCAGACATACAGGCAAAATGTTTgcaaaagaatatttttgtttgcatCATTTTTCATACTGACAAAATTTGGATACAAAGTAAAATTCAAACAAGGAGAAAATGCATGAATGTGTtatgattaataaaatacatacaattaaaaatattcacaaaggactt- i panPan1.JH649541 C 0 C 0 s gorGor3.chr19 31569331 709 - 56181278 aagtttgtttcaaaactgctctatcaaaaagagcgttcaaagatatgagttaaaggcatccatcacaaagtagtttctgagaatccttctgactactttttatgtgaagatattcccgtttccaatgaaggcttcaaagcactccaaatatccgcttgcatattctgcaaaaagagtgcttcaaatctgctctatcaaaaggaaggttcaactctgtaagttgaatgcacacatcacaaagaagttcctgagaatgcttctgtctattttttacacggagatattcccgtttccaatgaaggcttctctccaccagaaatatccagttgcagattctacaaaaagagtgtttcaCTGTGAAGCCAGAAACTATTAACTGGGAACCAGAATTTCCATTTATGTATAGGTCTTTTGGCTAATATCAAATGTATAGAAAATCATTCTAAATTTTAAATATTAGCTCTATTTTTCAGACATAGTTGGTAATCTATATAAATAGCTTCAGGAATGCAGCTTAAGCTGTGTTAGTAGTTTAAGAAATAAGATAACCAGACATACAGGCAAAATGTTTGCAAAAGAATATTTTTGTTTGCATCATTTTTCATACTGACAAAATTTGGATACAAAGTAAAATTAAAACAAGGAGAAAATGCATGAATGTATTATGATTAATAAAACACATACAATTAAAAATATTCACAAAGGACTT- i gorGor3.chr19 I 11 C 0 a score=-1631.000000 s hg38.chr5_GL000208v1_random 8601 4 + 92689 ACAA-- s panPan1.JH649541 10374 1 - 20639 ---a-- i panPan1.JH649541 C 0 C 0 s gorGor3.chr19 31570040 2 - 56181278 --AA-- i gorGor3.chr19 C 0 C 0 s tarSyr2.KE949196v1 110100 4 + 1217359 --AATA i tarSyr2.KE949196v1 N 0 I 111 a score=10617.000000 s hg38.chr5_GL000208v1_random 8605 38 + 92689 ACAAATATTTATGGCAATCATTGATAAAAACAGTGTAA s panPan1.JH649541 10375 38 - 20639 acaaatatttatggcaaTCATTGATAAAAACAGTGTAA i panPan1.JH649541 C 0 C 0 s gorGor3.chr19 31570042 38 - 56181278 ACAAATATTTATGGCAATCATTGATAAAAACAGTGTAA i gorGor3.chr19 C 0 C 0 e tarSyr2.KE949196v1 110104 111 + 1217359 I a score=-265.000000 s hg38.chr5_GL000208v1_random 8643 1 + 92689 A s panPan1.JH649541 10413 1 - 20639 C i panPan1.JH649541 C 0 C 0 s gorGor3.chr19 31570080 1 - 56181278 C i gorGor3.chr19 C 0 C 0 s tupBel1.scaffold_178.1-194596 156531 1 - 194596 A i tupBel1.scaffold_178.1-194596 N 0 I 24 e tarSyr2.KE949196v1 110104 111 + 1217359 I a score=6989.000000 s hg38.chr5_GL000208v1_random 8644 26 + 92689 ATTAATAAATGCAATATGACTTTTGT s panPan1.JH649541 10414 26 - 20639 ATTAATAAATGCAATACGACTTTTGT i panPan1.JH649541 C 0 C 0 s gorGor3.chr19 31570081 26 - 56181278 ATTAATAAATGCAATATGACTTTTGT i gorGor3.chr19 C 0 C 0 e tupBel1.scaffold_178.1-194596 156532 24 - 194596 I e tarSyr2.KE949196v1 110104 111 + 1217359 I a score=5949.000000 s hg38.chr5_GL000208v1_random 8670 25 + 92689 TATGTTAACATAAACATGCATTGAA s panPan1.JH649541 10440 25 - 20639 TATGTTAGCATAAACATGCATtgaa i panPan1.JH649541 C 0 C 0 s gorGor3.chr19 31570107 24 - 56181278 TATGTTAATGTAAACATGCATT-AA i gorGor3.chr19 C 0 C 0 s tupBel1.scaffold_178.1-194596 156556 25 - 194596 AAAATTAAAAAATGTTTGCATTTAA i tupBel1.scaffold_178.1-194596 I 24 N 0 e tarSyr2.KE949196v1 110104 111 + 1217359 I a score=4422.000000 s hg38.chr5_GL000208v1_random 8695 16 + 92689 AAAATAGATTATTTGA s panPan1.JH649541 10465 16 - 20639 aaaatagattatttga i panPan1.JH649541 C 0 C 0 s gorGor3.chr19 31570131 16 - 56181278 AAAATAGATTATTTGA i gorGor3.chr19 C 0 C 0 e tarSyr2.KE949196v1 110104 111 + 1217359 I a score=546.000000 s hg38.chr5_GL000208v1_random 8711 1 + 92689 T s panPan1.JH649541 10481 1 - 20639 T i panPan1.JH649541 C 0 C 0 s gorGor3.chr19 31570147 1 - 56181278 T i gorGor3.chr19 C 0 C 0 s tarSyr2.KE949196v1 110215 1 + 1217359 T i tarSyr2.KE949196v1 I 111 N 0 a score=121229.000000 s hg38.chr5_GL000208v1_random 8712 457 + 92689 ACATTGCTAAAAACAAAAaaacagtgtttcaaaactgctctatcaaaaggaaggttcaactctgtgagttgaatgcacccatcacaaagaagtttctgagaatgcaattgtgtagtttttatttgaatatattccggtttccaatgaaggcttcaaagcactccaaatatacatttgcagatactacaaaaagagtgtttcaaatctgctctatcaaaaggaattttcaactctgtgagttgaatgcacacatcacaaggaagtttctgagaatgtttctttctagtttttatgtgaatataatcccgtttccaacgaaggcttcaaagcactccaaatatacacttgcagatacctcttaaagagtgtttcaaaactggtctaccaaaaggaaggttcaactcagtgagttgaaagcacacatcccaaggaagcctctgagaatgcctctgtccag s panPan1.JH649541 10482 457 - 20639 ACATtgctaacaacaaaaaaagagtgtttcaaaactgctctatcaaaaggaaggttcaactctgtgagttgaatgcacacatcacaaagaagtttctgagaatgcaattgtgtagtttttatttgagtatattcccgtttccaatgaaggcttcaaagcactccaaatatacatttgcagatactacaaaaagagtgtttcaaatctgctctatcaaaaggaattttcaactctgtgagttgaatgcacacatcacaaggcagtttctgagaatgtttctttctagtttttatgtgaatataatcccgtttccaacgaaggcttcaaagcactccaaatatacacttgcagatacCTCttaaagagtgtttcaaaacggctctatcaaaaggaaggttcaactctgtgagttgaaagcacacatcccaaggaggtttctgagaatgcttctgtctag i panPan1.JH649541 C 0 N 0 s gorGor3.chr19 31570148 457 - 56181278 ACATTGCAAAAAACAAAAaaagagtgtttcaaaactgctctatcaaaaggaaggttcaactctgtgacttgaatgcacacatcacaaagaagtttctgagaatgcaattgtgtagtttttatttgaatatattcccgtttccaatgaaggcttcaaagcactccaaatatacatttgcatatactacaaaaagagagtttcaaatctgctctatcaaaaggaattttcaactctgtgagttgaatgcacacatcacaaggaagtttctgagaatgtttctttctagtttttatgtgaatataatcccgtttccaacgaaggcttcaaagcactccaaatatccacttgcagatacctcttaaagagtgtttcaaaacttctctatcaaaaggaaggttcaactctgtgagttggaagcacacatcccaaggaggtttctgagaatgcttctgtctag i gorGor3.chr19 C 0 C 0 a score=39074.000000 s hg38.chr5_GL000208v1_random 9169 720 + 92689 tttttatttgaagacattcatttttccaacaaaggacaccaagcggtcaaatcatcctcttgtagatc-tacaaaaggagtgtttcaaaactgctctatgaaaagaaaggtccaactctgtgagttgaatgcaaacatcacaataaagtttctgaaaatgcttctgtctggtatttatctgacgatattcccgtttccaatgaattcctcaaagcagtcaaaatatccacttgcagattctacaaaaatagtgtttcaaaactgctctatcaaaagaaaggttaaaatctgtgcgttgagtgcacacatcagaaacaaaattctgagaatgcttctttctagtttttatataaagaaatttccttttctaccacaggcattaaagggatccaaatatccatgtgtagattctacaaaaagagtgtttcaaaactgctctatcaaagggaaggttcaactctgtgggttgaatgcacacatcacaaagtagtttctgagaatgcaactgtctagtttttatgtgaatatattcccgtttccaatgaaggcttcaaagcactccaaatatacacttgcagatactacaaaaagaa-gtttcaaaactgctctaacaaatggaaggttcaactctgtgagttgaatgcacccatcacaaggaagtttctgagaatccttctgtcagtttt-catgtgaatatattcccgtttccaacgaaggtttc s gorGor3.chr19 31570605 722 - 56181278 tttttatgtgaatatattcccgtttccaacgaaggcttcaaagcactccaaatattcaattgcagatagtacaaaaagaatgtttcaaatctgttctatcaaaaggaaggttcaactctgtgagttgaactcacatatcacaaggaagcctctgagaatgcctctgtccagtttttatgtgaagacattcacgtttccaacgaaggacaccaagcggtcaaattatcctcttgtaga-tctacaaaaggagtgtttcaaaactgctctatgaaaagaaaggtccaactctgtgagttgaatgcaaacatcacaataaagtttctgaaaatgcttctgtctggtatttatctgacgatattcccgtttccaatgaattcctcaaagcagtcaaaatatccacttgcagattctacaaaaatagtgtttcaaaactgctctatgaaaagaaaggttaaaatctgtgcgttgagtgcacacatcagaaacaagattctgagaatgcttctttctagtttttatataaagaaatttccttttctaccacaggcattaaagggatccaaatatccacgtgtagattctactaaaagagtgtttcaaaactgctctattaaaaagagtgttcaacactgtgagttgaatgcacttatcacaaagtagtttctcagaatccttctgtctacttagtatgtgaagatatgcccgtttccaaagaaggcttc i gorGor3.chr19 C 0 M 10 a score=0.000000 s hg38.chr5_GL000208v1_random 9889 59 + 92689 aaagcactccaaatatacagttgcagatactacaacaagagtatttcaaaactgctcat e gorGor3.chr19 31571327 10 - 56181278 M a score=117804.000000 s hg38.chr5_GL000208v1_random 9948 1996 + 92689 caaaaggaagtttcaactctgtgagttgaatgcacacatcacaaggatgtttctgagaatgcttctgtccagtttttttgtgaagatattcccgtttccaacgaaggacaaaaagcggtcaaaatatccacttgcagattctacaaaaacagtgtttcaaaactgctctagcaaaagaaatgtttaactctctgagttgaatgcaatcatcacaaagtagtttctgagaatgcttctgtctagtttttatgtgaagatatttccttttccaccatagccctcaaagtgctccaaatgtccacttgcagattctacgttaagagtgtttcaaaactgctctgtcaaaagttaggtt-aaccctgtgagttgaatgcacacatcacaaagtactttttgagaatgcttctgtctagtttttaggtgaagatattcccgtttccaatgaaggcttcaaagcattccaattatccacttgctgatcctacaaaaatagtgtttcaaaactgctctatcaaaacaaaggttaaattcgttgagttgtaaccacacgtcacaaactggtttctgagaatgcttctgtcaagtttttatttgaagatattactttttctacaatcggccacaaagcgctccaaatatccaattgcagattctcctaaaagagtgtttcaaaactgctctatgaaaagaaaggaccaactctgtgagttgaatgcaaacatcacaaaggagtttctgagaatgcttctgtctggtatttatgtgacgatattcccgtttccaatgaattcctcaaagcagtcaaaatatccacttgcagattctacaaaaagagtgtttcaaaactgctctatccaaagaaagtttaaaatctgtgcattgaatgcacacatcagaaactagattcggagaatgcttctttctagtttttataaaaagcaattgccttttctaccagaggacttaaagggatccaaatatcctcatgcatattctacaaaaagagtgttgcaaatctgctctatcaaaagaagatttcaactctgagagttgaatgcactcatcacaaagtagtatctcagaatctttctgtctacattttatgtgatgatattcccgtttccaatgaaggcttatctca----actagaaatatccacttgcagattctacaaaaagagtgtttccaaactgctctatcaaaaggaaggttcaactctgtgagttgaatgcacacgtcacaaggaagtttctgagaattcttctgtctagtttttatgtgaatatattcccgtttccaacgaaggcttcaaaccactccaaatatacacttgcaaatactacaaaaagaatgtttcaaaactgctctaccaaaagaaaggttcaactctgtgagttgaatacacacatcacaaggaagtttctgggaatgcttctgtctagtttttatgtgaatatattcccgtttcctacgaaggcttcaaagaactccaaatatccaaatgcagacacttcaaaaagagtgtttccaatctgctttgtcaaaaggaaggttcaaatctgtgagttgaagtcacacatcacaaggaaggttctgagaatgcttctgtccagtttttatgtgaagacatttccgtttccaacgaaggacaccaagcggtcaaaatagccacttgcagattctacaaaaagagtgtttcaaaactactctacaaaagga-aggttcaactctgtgagttgaatgcacacatcgcaaagaaatttctgagaatgcttctgtctagtttttatgtggagatatagccgtttccaaagaagacttcaaagttctacaattatctacatgcatattctacaaaaagagtgtttcaaaactgctctatccaaaggaaggttgaactcagtgagttgaatgtacacatcaaaaggaagtttctgggaatgcttcagtctagtttttatgtgaatatattcacttttccaatgaaggcttcaaagca s gorGor3.chr19 31571337 1990 - 56181278 caaaaggaaggatcagctctgtgagttgaatggacacatcacaaagaagtttctgagaatacatctgtctagtttttatgtgaagatatacccgttttcatcgaagacttcaaagtacaccaatgatccacttgcagatcctacaaaaagagtgtttcaaaactgctctatcaaaatgaagattcaactctgtgcattgaaggaacacatcacaaggaagtttctgagaatgcttctctctagtttttatgtgaatatattcccgtttccaatgaaa-gcttaaagcactccaaatatccacttgcagatactacaaaaagactctttcaaaactgctctatcaaaacgaaggttcagctctgtgagttgaatggacacatcacaacgaagtttctgataagacatctgtctagtttttatgtgaagatattcccgtttccaacgaagactgcaaattactccaattatccaagtgcagatgctacaaaaagagtgtttcagaactgctctatcaaaaggaaggttcaaccctgtgagttgaatgcacacatcagaaggaagttactgagaatgcttctgtctagtttttatttggagatattcccttttccaatgaaggcttcaaaccactacaaatatccacttgcagatactacagaaagactctttcaaaacttctctatcaaaaggaaggttcagctctctgagttgaatggacacatc-caaagaagtttctgagaatgcatctttctagtttttatgtgaagatatacccgttttcatcgaagacttcaaagcactccaattatccacatgcggattctacaaaaagagtgtttcaaaactgctctatcaaaaggaagattcaactctgtgagttgaatgcacacatcacaaagaagtttttgagaatgcttctctctagtttttatgtgaatatattcctgtttccgat-gaaagcttaaagcactccaaatatccacttgcagatactacaaaaagagtgtttcaaaactgctctaccaaaaggaaggttcaactctatggggtaaatgcacatatcaaaaagaagtttgtgagaatacttctttctagttttcatgtgaagatatacacgtgtccaacgaagact----tcaaagtactccaattatcaacttgcagattctacagaaagagtgtttcaaatctgctctaataaaaggcagtttcaactctgtgagttaaatgcacacatcacaaggaagtttctgagaatgcttctgtcttttttttatttggagatattcccgtttccatcaaaggcttgaaaccactacaagtatccacttgcagatactacaaaaagactctttcaaaactgctctatgaaaaggaaggttcagctctgttacttgaatggacacatcacagtgaagtttgtgagaatgcatctgtctagtttttatgtgaagacatacccgtttccaacgaagacttcaaagtactccaataatccacctgcagatactacaaaaggagtgtttcaaaactgatctttcaaaaggaactttcaactctgtgagttgaatgcacacatcacaaggaagtttctgagaatgcttctgtctag-ttttatgtgaatatattcccttttccaagaaaggctacaaagcgccccaaatatccaatggcagatactacaaaaagagtgtttcaaaactgttctgtaaaaagataggtttaactctgtgagatgaatacccacatcacaatgtagtttttgagaatccttcagtcaaatttttatgtgaacatattcccttctccaacgaaggcttcaaagcactccaaatatacacttgcatattctacaaaaagagtgtttcaaaactgctctatcaaaagaaaggttcaactctgtgagttgaatgcaaacagcgaaaagaagtttctga----gcttctgtctagtttatatgtggagatattcccgtttctaaggaaggtttcaaagCA i gorGor3.chr19 M 10 N 0