##maf version=1 scoring=roast.v3.3 a score=1514767.000000 s hg38.chr9_GL383541v1_alt 0 1229 + 171286 AAACActgagggcaggaaaagatggatgtctgtgctctagcaatcaggtaagaagggccaaattcttcctttctctacatttctgttctattcaggccctcaataaattggatgatgcccacccacattggggagggcaaactgctgtcctaaattccctgattcaatgctagtttcatctgcaaacaactacacagacacaccagggaatagcgtttagttaaatatctgggcatcctgtgatcagtcaagttgacacataaaattaaccatcacaAcacattttaattatttattcatctattgataaacatctattgattccaccttttgactattgtgaataaggctgctatgaaaattgatggacaaatacctgtttgagtccttgtgttagtctgcccttacatggctaataaagacatacccgagactgggtaatttaaaaatgaaagaggtttaattgactcacagttcagcatggctggggaagcctcaggaaactcacaatcattgcagaaagggaagcaaacgtgtccttcttcacatgttggcagcaaggagaaatgcctggcaaaagggagaaaagccccatataaaaccatcagatctcatgagaactcattcacgaccatgagaacagcatgaggataactg-----------------cctcccactaggtcactcctatgacatgtgaggatgatgggaagtacaatttaagatgagattttggtggggagacagccaaaccatatcattctgcccc-ggcccttcccaaatctcatgtcctcacttatcaaaacgtaatcatacccttccaacagtcccccaaagtcttaacccattccagcatt---aactcaaaagtccgagtccaaagtctcatctgagacaaggtaagtcccttccacctatgagcctgtaaaatcaaaagcaagttagttacttccttgatacaatgggggtacaggcatcgggtaaatacacccattccaaattggagaaattggccaaaacaacagggttacaggccccatgaaagtctgaaatccaatagagcagtcattaaattttaaagttccaaaatgatct-ctttaactccaagtcttacgtgcaagacacactgatgcaagaggtgggctcccatggccttgggcagctccgcccctgtggctttgcagggtaatgcccacttccctgctgctttcatggctggcattaagtgtctgtggcttttccag s panTro4.chr9 68565661 1226 + 137840987 aaacactgagggcaggaaaagatggatgtctgtgctctagcaatcaggtaagaagggccaaattcttcctttctctacatttctgttctattcaggccctcaataaattggatgatgcccacccacattggggagggcaaactgctgtcctaaattccctgattcaatgctagtttcatctgcaaacacctacacagacacaccagggaatagcgtttagttaaatatctgggcatcctgtgatcagtcaagttgacacataaaattaaccatcacaacccattttaattatttattcatctattgataaacatctgttgattccaccttttgactattgtgaataaggctgctatgaaaattgatggacaaatacctgtttgagtccttgtgttagtctgcccttacacggctaataaagacatacccgagactgggtaatttaaaaaagaaagaggtttaattgactcacagttcagcatggctggggaagcctcaggaaactcacaatcattgcagaaagggaagcaaacgtgtccttc---aaatgttggcagcaaggagaaatgcctggcaaaagggagaaaagccccatataaaaccatcagatctcatgagaactcactcacgaccatgagaacagcatgagggtaactg-----------------cctcccactaggtcactcctatgacatctggggatgatgggaagtacaatttaagatgagattttggtggggagacagccaaaccatatcattctgcccc-ggcccttcccaaatctcatgtcctcacttatcaaagcataatcatacccttccaacagtcccccaaagtcttaactcattccagcatt---aactcaaaagtccaagtccaaagtctcatctgagacaaggtaagtcccttccacctatgagcctgtaaaatcaaaagcaagttagttacttccttgatacaatggggatacaggcattgggtaaatacacccattccaaattggagaaattggccaaaacaacagggttacaggccccatgaaagtctgaaatccaatagagcagtcattacattttaaagttccaaaatgatct-ctttaactccaagtcttacgtgcaagacacactgatgcaagaggtgggctcccatggccttgggcagctctgcccctgtggctttgcagggtaatgccctcttccctgctgctttcatggctggcattaagtgtctgtggcttttccag i panTro4.chr9 N 0 C 0 s nomLeu3.chr1a 57758374 1225 - 122973662 aaacactgagggcaggaaaagatggatgtctctgctctagcaatcaggtaagaagggccaaattcttcctttctctacatttctgttctcttcaggccctcaataaattggatgatgcccacccacattggggagggcaaactgctgtcctaaattccctgattcaatgctagtttcatctgcaaacacctacacagacacaccagggaatagtgtttagtcaaatatctgggcatcctgtgatcagtcaagttgacacataaaattaaccatcacaacacattttaattatttactcatctattgataaacatctactgattccaccttttgactattgtgaataaggctgctatgaaaattgatggacaaatacctgtttgagtccTtgtgttagtctgctctcacatggctaataaagacatacctgagactgggtaatttaaaaatgaaagaggtttaattgactcacagttcagcatggctggggaagcctcaggaaactcacaatcattgcagaaagggaagcaaatgtgtccttcttcacatggtggcagcaaggagaaatgcctggcaaaagggagaaaagccccatataaaaccatcagatctcatgagaactcactcatgaccatgagaacagcctgagggtaactg-----------------cctcccaccaggtcactcctatgacatgtggggattatgggaagcacaatttaagatgagattttggtggggacacagccaaaccatatcaTTctgc------tccttcccaaatctcatgtcctcacttatcaagacataatcatacccttccaacagtcccccaaagtcttaactcattccagcgtt---aactcaaaagtccaagtccaaagtctcatctgagacaaggtaagtcccttccacctatgagcctgtaaaatcaaaagcaagttagttacttcctctatacaatgggggtacaggcatcgggtaaatacacccattccaaattggagaaattggccaaaacagcagggttacaggccccatggaagtctgaaatccaatagagcagtcattaaattttaaagttccaaaatgatctcctttaactccaagtcttacatgcaggacacactgatacaagaggtgggctcccatggccttgggcagctccacccctgtggctttgcagggtaatgcccccttctctgctgctttcatggctggcattgagtgtctgtggcttttccag i nomLeu3.chr1a N 0 I 30 s macFas5.chr15 80771823 1242 + 112612857 aaactctgagggcaggaaaagatggatgtctctgctctagcaatcaggtaagaagggccaaattctgcatttctctatatttctgttctactcaggccctcagtaaattggatgatgcccacccacattggggagggcaaactgctgttctaaattccctgattcaatgctaatttcatctggaaacacctacacagacacaccaggcaatagtgtttagtcaaatacctgagtgtcctgtgatcagtcaagttgacacataaaattaaccatcacaacacattttaattatttattcatctattgataaacatctattgattccaccttctgactaacgtgaatagggctgctatgaaaattgatggacaaatatctgtctgagtccttgtgttagtctgttctcacactgctaacaaggacatacccaagactgggtaatttaaaaatgaaagaggtttaattgactcacagttcagcatgactggggaagcctcaggaaactcacaatcattgcagaaagggaagcaaacgtgtccttc---acatggtgtcagcaaggagaagtgcctggcaaaagggagaaaagccccatacaaaaccatcagatctcatgagaactcactcatgatcatgagaacagcatgatggtaactgcccccatgattaaattacctcccaccaggtcgctcccatgacatgtggggattgtgggaagtacaatttaagatgagattttggtggggacacagctaaacc--atCAttctgcccctggcccttcccaaatctcttatcctcacttatcaaaacacaatcatgcccattcaacagtcccccaaagtcttaactcattccagcatt---aactcaaaagtccaagtccaaagtctcatctgaaacaaggcaagt-ccttccacctatgagcctgtaaaatcaaaagcaagttaattacttccttgatacaatgggggtacagtcattgggtaaatacacccattccaaattggagaaattagccaaaacagcagggttacaggccccatgaaagtctgaaatccaatagagcagtcaacaaattttaaagttccaaaatgatctcctttaactccaagtcttacgtgcaggacacactgatgcaggaggtgggctcccatggccttgggcagctctgcccatgtggcttttcaaggtactgcccccttccctgctgctttcatggctggtattgagtgtctgtggcttttccag i macFas5.chr15 N 0 C 0 s papAnu2.chr15 76821139 1242 + 107442819 aaactctgagggcAGGAAAAGATGGATGTCTCTGCTCTAGCAATCAGGTAAGAAGGGCCAAATTCTGCCTTTCTCTATATTTCTGTTCTACTCAGGCCCTCAGTaaattggatgatgcccacccacattggggagGGCAAACTGCTGTTCTAAATTCCCTGATTCAATGCTAATTTTATCTGGAAACACCTACACAGAAACACCAGGCAATAGTGTTTAGTCAAATACCTGAGTGTCCTGTGATCAGTCAAGTTGacgcataaaattaaccatcacaacacattttaattatttattcatctattgataAACATCTATTGATTCCACCTTCTGACTAACGTGAATAGGGCTGCTATGAAAATTGATggacaaatatctgtttgagtccttgtgttagtctgttctcacactgctaacaaggacatacccaagactgggtaatttaaaaatgaaagaggtttaattgactcacagttcagcatggctggggaagcctcaggaaactcacaatcattgcagaaagggaagcaaacgtGTCCTTC---ACATGGTgtcagcaaggagaagtgccgggcaaaagggagaaaagccccatacaaaaccatcagatctcatgagaactcactcatgatcatgagaacagcatgacaataactgcccccatgattaaattacctcccaccaggtcgctcccatgacatgtggggattgtgggaagtacaatttaagatgagattttggtggggacacaactAAACC--ATCATTCTGCCACTGGCCCTTCACAAATCTCTTATCCTCACTtatcaaaacacaatcatgcccattcaacagtcccccaaagtcttaactcattccagcatt---aactcaaaagtccaagtccaaagtctcatctgaaacaaggcaagt-ccttccacctatgagcctgtaaaatcaaatgcaagttaattacttccttgatacaatgggggtacagtcattgggtaaatacacccattccaaattggagaaattagccaaaacagcagggttacaggccccatgaaagtctgaaatccaatagagcagtcaacaaattttaaagttccaaaatgatctcctttaactCCAAGTCTTACGTGCAGGACACACTGATGCaggaggtgggctcccatggccttgggcagctctgcccatGTGGCTTTTCAAGGTACTGCCCCCTTCCCTGCTGCTTTCATGGCTggtattgagtgtctgtggcttttccag i papAnu2.chr15 N 0 C 0 s calJac3.chr1 111307554 1238 - 210400635 aaacactgagtgcagaagaagatggatgtctcttctctagcaatcaggtaagtagggccaaattctttttttctctatatttctgttctattctggccctaaataaattggatgatgcccacccacattggggagggcaaactgctgtcctaaattccctgattcaatgctaatttcatctggaaacacctacacagacacactgggaaataatgtttggtcaaatatctggacatcctgtgatcagtcaagttgacacataaaattaaccattgcaATacattttattcatctattcatctagagataaacatctattgattccatcttctgactattatgaataaggttgctatgaaaattgatggacaaatatctgtttgagttcttatgttagtccgttctcacactgccagtaaagacatacctgagactgggtaatttatagaggaaaaaggtttaattgactcatacctcagcatggctggggaagcctcgggaaacttacaatcattgcagaaaggtaagcaaacatgtccttc---ccatggtggcagcaaggagaagtgcctagcaaaagggggaaaggccccatataaaatcgtcagatctcatgagaactcactcatgatcatgagaacagcatgagggtaacttcccccatgattgaattacctcccaccaggtggctcccatgacatgtggagattatgggaagtataatttacgatgagattttggtagggacacacccaaaccatatcattctgcccctggcccttcccaaatctcatgtccttacttatcaaaacacagtgatgcccttccaacaattccccaaagtcttaactcattctagcattgtggactcaaaagtccaaatccaaagtctcatctgagacaaggcaagtcccttccacctatgagcctgtaaaatgaaaagcaagttagttacctcctagataaaatatgggtacaggcattgggt----------attccaaacgagagaaattggtcaaaacagaggggttacaggcctcatgcaagtccaaaatccaatagagcagtcattaaaccttaaagttccaaaatgatcttctttaacttcatgtcttatgtgcaggacaccctgatgaaagaggtgagctcccatggccttgggcagctccatccctgtggctttgcagagtacagccccctttctggctgctttcatggctggcattgagtgtctgtggcttttccag i calJac3.chr1 N 0 C 0 a score=1910.000000 s hg38.chr9_GL383541v1_alt 1229 2 + 171286 gt s panTro4.chr9 68566887 2 + 137840987 gt i panTro4.chr9 C 0 C 0 s macFas5.chr15 80773065 2 + 112612857 gt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76822381 2 + 107442819 gt i papAnu2.chr15 C 0 C 0 s calJac3.chr1 111308792 2 - 210400635 gt i calJac3.chr1 C 0 C 0 e nomLeu3.chr1a 57759599 30 - 122973662 I a score=1299479.000000 s hg38.chr9_GL383541v1_alt 1231 1072 + 171286 acatggtacaagctgtcggtagatctaccattctggggtctggagaacagtggctctcttctcacaactcccctaggcagtgccccactggggattctgtgtgggggctctaacctcacatttcccttccacactgtcctagcagagattctccatgagggctctgaccctacagcaaacttctgcctggacgtcccagaattttcatacatcctctgaaatctaggtggaggttcccaaacctcaattcttgtcttctgcacactttcaggaccaacactacatggaagttgccaaggcttggggcttgcatcctctgaagcaacagcctgagctgtctgttggccccttttagctacacctgagatgcagagcaccaagtcccgaggttgcacagagcagcaggggggccctgggcccagcccatgaaaccatgtttccctcctaggcctcccagcctgtgacaagaggtgctgctgtgaagttctctgaaatgccctggagactttttccctattgacttggtgattaatatttggctccttattagttatgcaaatttctgcagccagcttgaatttctccccagaaaatggtttctttttttttccctattgcatcgtcaggctgcaaatttcccagacttttatgctctgcttcctcttgaatgctttgccgcttagaaatttctctccccaggtaccctaaaccatccctctcaagttcaaagttccacagatctctagggcaggggcaaaatgatgccagtctctttgaatagcaagagcgacctttactctagtttccaacaggttcctcatctccatctgagaccacttcagcctggacttcattgttcatgtcactatcagcattttggtcaaagccattcaacaagtctctgctctgggaagttccaaactttcccacatcttcctatcttctgggccctccaagtctctaggaagttccaaaccttcccacattttcctgtcttcttctgagccctccaaacagttccaacctctgcctgttaccccattccaaagtcgcttctacatttttgggtatc s panTro4.chr9 68566889 1071 + 137840987 acatggtgcaagctgttggtagatctaccattctggggtctggagaacagtggctctcttctcacaactccactaggcagtgccccagtggggattctatgtgggggctctaacctcacatttcccttccacactgtcctagcagagatcctccatgagggctctgaccctacagcaaacttctgcctggacgtcccggaattttcatacatcctctgaaatctaggtggaggttcccaaacctcaattcttgtcttctgcacacctgcaggaccaacactacatggaagttgccaaggcttggggcttgcatcctctgaagcaacagcctgagctgtctgttggccccttttagctacacctgagatgtagagcaccaagtcccgaggctgcacagagcaacaggggggccctgggcccagcccatgaaaccatgtttccctcctaggcctcccagcctgtgatgagaggtgctgctgtgaagttctctgaaatgccctggagactttttccccattgacttggtgattaatatttggctccttattacttatgcaaatttctgcagccagcttgaatttctccccagaaaatggtttctttttttt-ccctattgcattgtcaggctgcaaatttcccagacttttatgctctgcttcctcttgaatgctttgccgcttagaaatttctctccccagataccctaaatcatccctctcaagttcaaagttctacagatctctagggcaggggcaaaatgatgccagtctctttgaatagcaagagcgacctttactctagtttccaacaggttcctcatctccatctgagaccacctcagcctggacttcattgttcatgtcactatcagcattttggtcaaagccattcaacaagtctctgctctgggaagttccaaactttcccacatcttcctatcttctgggccctccaagtctctaggaagttccaaactttcccacattttcctgtcttcttctgagccctccaaatggttccaacctctgcctgttaccccattccaaagtcgcttctacatttttgggtatc i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57759629 1064 - 122973662 acacggtgcaagctgtcggtagatctaccattctggggtctggtgaacagtggctctcttctcacaactccactaggcagttccccagtggggattctgtgtgggggctctaacctcacatttcccttccacactgtcctagcagagattctccatgaaggctctgaccctacagcaaaattctgcctggacaccccagaattttcacacatcctctgaaatctaggtggaggttcccaaacctcaattcttgtcttctgcacatcttcaggaccaacactacatggaagctgccaaggcttggggcttgcaccctctgaagcaacagcctgagctgtatgttggccccttttagctacacctgagatgcagagcaccaagttccgaggctgcacagagcagcaggggggccctgggcccagcccatgaaaccatgtttccctcctaggcctcccagcctgtgatgggaggtgctgctgtgaaggtctctgaaatgccctggagactttttccccattgacttggtgattaatatttggctccttattacttatgcaaatttctgcagccagcttgaatttctccccagaaaatggtttttttttt---tccttttgcatcgtcaggctgcaaatttcccaaacttttatgctctgcttcctctcgaatgctttgccgcttagaaatttctctcaccagataccctaaatcatccctctcaagttcaaagttccacagatctctagggcaggggcaaaatgatgccagtctttttgaatagcaagagcgacctttactctagtttccaacaggttcctcatctccatctgagaccatctcagcctgggcttcattgttcatgtcattatcagcatttttgtcaaagccattcaacaagt-----ctctgggaagttccaaactttcccacatcttcctgtcttctgggccctccaagtctctaggaagtttcaaactttcccacattttcctgtcttcttctgagccctccaaatggttccaacatctgcctgttaccccattccaaagtcgcttctacatttttgggtatc i nomLeu3.chr1a I 30 C 0 s macFas5.chr15 80773067 1065 + 112612857 acatgacgcaagctgtcagtagatctaccattctagagtctgcagaacagtggctctcttctcatggctccgctaggcagtgccccagtggggattctgtgtgtgggctctaacctcacagttgccttccacactgtcctagcagagattctccatgagggctgtgtccctacagcaaacttctgcctggacatcccagcattttcataaatcctctgaaatctaggtggaggttcccaaacctcaaatcttgtcttctgtacatctgcaggaccaacaccatatggaagctgctaaggcttggggcttgcaccctctgaagcaacagcctgagctgtattttggccccttttagctacacctgagatgcagggcaccaagttccaaggctgcacagagcagcaggggggtcctgggcccaggccatgaaatcatgtttccctcctaggcctcccagcccgtgatgggagtggctgctctgaaggtctctgaaatgccctggagacattttccccattgacttggtgattaatatttggcttcttattacttatgcaaatttctgcagccagcttgaatttctccccagaaaattgttttttttttt--tcctattgcctcttcaggctgcaaatttcctaagcttttatgctctgcttcctcttgaatgctttgccacttagaaatttctctcaccggatactctaaatcatccctctcaagttcaaagttccacagatctctagggcaagggcaaaatgatgccagtctctttgaatagcaagagtgacctttactctagtttccaacaggttcctcatctctatctgagaccatctcagcctggacttcattgttcatgtcactatcagcattttggtcaaagccattcaacaagt-----ctctgggaagttctgaactttcccacatcttcctgtcttctgggccctccaagtctctaggaagttccaaactttcccacattttcctgtcttcttctgagccctccaaatggttccaacctctgcctgttaccccattccaaagttacttctacatttttgggtatc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76822383 1062 + 107442819 acatgacgcaagctgtcagtagatctaccattctggggtctgcagAACAGTGGCTCTCTTCTCATGGCTCcgctaggcagtgccccagtggggattctgtgtgggggctctaacCTCACAGTTGCCTTccacactgtcctagcagagATTTTCCATGAGGGCTGTGtccctacagcaaacttctgcctggacatcccaGCATtttcatatatcctctgaaatctaggtggaggttcccaaacctcaaatCTTGTCTTCTGTACATCTGCAGGACCAACACCATATGGAAGCTgctaaggcttggggcttgcaccctctgaagcaacagcctgagctgtattttggccccttttagctacacctgagatgcagggcaccaagttccaaggctgcacagagcagcagggggTTCCTGGGCCCAGGCCATGAAATCAtgtttccctcctaggcctcccagcCCGTGATGGGAGTGGCTGCtctgaaggtctctgaaatgccctggagacattttccccattgacttggtgattaatatttggctccttattacttatgcaaatttctgcagccagcttgaatttctccccagaaaattg---tttttttt--tcttattgcctcatcaggctgcaaatttcctaagcttttatgctctgcttcctcttgaatgctttgccacttagaaatttctctCACCGGATACTCTAAATCatccctctcaagttcaaagttccacagatctctagggcaggggcaaaatgatgCCAGTCTCTTTgaatagcaagagtgacctttactctagtttccaacaggttcctcatctccatctgaaaccatctcagcctggacttcattgttcatatcactatcagcattttggtcaaagccattcaacaagt-----gtctGGGAAGTTCtgaactttcccacatcttcctgtcttctgggccctccaagtctctaggaagttccaaactttcccacattttcctgtcttcttctgagccctccaaatggttccaacctctgcctgttaccccaTTCCAAAGTTActtctacatttttgggtatc i papAnu2.chr15 C 0 C 0 s calJac3.chr1 111308794 1047 - 210400635 gcacagtgcaagctgtcagtaaatctaccattctggggtctggaggacagtgactctcttctcacaactccactgtgcagtgccccagtgggaattctgtgtaggggctctaaccccacatttcccttccacactgtcctagcaaagattcttcatgaggacttcacccctataacaaacttctgcttggacatcccagaattttcatacatcctctgaaatctaggcagaggttcccaaacctcaa--------ttctgcatatctgcaggaccaacaccacatggaagctgccaaggcttagggcttgtgccttctgaagcaacagcctgagctgcacattggccccttttagccacacataggatgcaggggaccaagttctgaggccacacagagcagcagcagggcactgggcctagctcacgaaaccatgttgccctcctagg-ctcccagcctgtgatggttggggcttctgtgaaggtctccaatataccctggagacattttcctcattgacttgatgattaatatttggctccttattacttatgcaaatttctgcagccagcctgaatttcttcccaggaaaatggggatttttt---ttctgccgcattgtcaagctacaaattttccaaacttttatgctctacttccccttgaatgcttcgccacttagacatttctctctccaaatgccctaaatcatccctctcaagttcaaagttccacatatttctaggac-ggggcaaaatgccaccagtctctttgcatagcaagagtgacctttactctagtttccaacaagtttctcatctccatctgagaccacctcaccctggacttcattgttcatgtcactatcagcatttttgccaaagccattcaacaagt-----ctctgggaagttccaaactttcttacatctt-ctgtcttcgaggccctccaagtctctaagaagttccaaactttcccacattttcctg---tcttctgagccctccaaatggtttcaaag--ggtctgttaccacattccaaagttacttctaca-tgttgggtatc i calJac3.chr1 C 0 C 0 a score=387483.000000 s hg38.chr9_GL383541v1_alt 2303 224 + 171286 tttacagcagcgccccactatctgcagtaccaatttactgtattagtccattctcatgctgctaataaagacatacctgagac--tgggtaatttataaaggaaaggggtttaatttactcacagttcagcatggctagggaagcctcaggaaacttgcaatcatggcagaaggggaaacaaacatgtccttcttcacatggtggcagcacagagaagtgtcgagc s panTro4.chr9 68567960 224 + 137840987 tttacagcagtgccccactatctgcagtaccaatttactgtattagtccattctcatgctgctaataaagacatacctgagac--tgggtaatttataaaggaaagaggtttaatttactcacagttcagtatggctagggaagcctcaggaaacttacaatcatggcagaaggggaaacaaacatgtcctccttcacatggtggcagcacagagaagtgtcgaac i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57760693 224 - 122973662 tttacagcagcaccccactctctgcagtaccaatttactgttttagtccattctcatgctgctaataaagacacacctgagac--tgggtaatttataaaggaaagaggtttaattgactcacagttcagcatggctggggaagcctcaggaaacttacaatcatggcagaaggggaaacaaacatgtccttcttcacatggtggcagcacagagaagtgtcgagc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79693492 224 + 112192347 tttacagcagcaccccactctctgcagtaccaaTTTACtgtattagtccattctcatactgctaataaagacatacctgagac--tgggtaatttaaaaaggaaagaggtttaattgactcacagtttaggatggctagggaagcctcaggaaacttacaatcatggcagaaggggaaacaaacatgtccttcttcacatggtggcagcatggagaagtgtcaagg i rheMac3.chr15 N 0 C 0 s macFas5.chr15 80774132 224 + 112612857 tttacagcagcaccccactctctgcagtaccaatttactgtattagtccattctcatactgctaataaagacatacctgagac--tgggtaatttaaaaaggaaagaggtttaattgactcacagtttaggatggctagggaagcctcaggaaacttacaatcatggcagaaggggaaacaaacatgtccttcttcacatggtggcagcatggagaagtgtcaagg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76823445 224 + 107442819 tttacagcagcaccccactctctgcagtaccaatttactgtattagtccattctcatactgctaataaagacatatctgagac--tgggtaatttaaaaaggaaagaggtttaattgactcacagtttaggatggctagggaagcctcaggaaacttacaatcatggcagaaggggaaacaaacatgtccttcttcacatggtggcagcatgGAGAAGTGTcaagg i papAnu2.chr15 C 0 C 0 s calJac3.chr1 111309841 223 - 210400635 ttta---cagtgccccaccctctgcagtaccagtttactatattagtccattctcatgctgctaataaaaatatacctgagactgtgggtagttgataaaggaaagaagtttcattgactcacagttcagcatgactggggaagactcaggaaacttacactcaaggtagaaggggaaccaaacatgttcttcttctcatgatggcagcaaggagacttgttgagc i calJac3.chr1 C 0 C 0 a score=436329.000000 s hg38.chr9_GL383541v1_alt 2527 185 + 171286 aaaagggggaaatgccccatataaaaccatcagatctcatgaaa----actcacaatcatgagaatagcatgaaggtaaccatcctcatgattaaattacctcccaccaggtctctcgcatgacatgtggggattacgggagctacaattcaagatgagattttggtgaggacacagccaaaccatatc s panTro4.chr9 68568184 185 + 137840987 aaaagggggaaatgccccatataaaaccatcagatctcatgaga----actcacaatcatgagaatagcatgaaggtaaccatcctcatgattaaattacctcccaccaggtctctcacatgacatgtggggattacgggagctacaattcaagatgagattttggtgaggacacagccaaaccatatc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64721532 185 + 135191526 Aaaatggggaaatgccccatataaaaccatcagatttcatgaga----actcacaatcatgagaatagcatgaaggtaaccatcctcatgattaaattacctcccaccaggtctcccctgtgacatgtggggattacgggagctacaattcaagatgagattttggtgaggacacagccaaaccatatc i ponAbe2.chr9 N 0 C 0 s nomLeu3.chr1a 57760917 189 - 122973662 aaaagggggaaatgtcccatataaaaccatcagatctcatgagaactcactcacaatcacgagaatagcatgaaggtaaccatcctcatgattaaattacctcccaccaggtctgtcccatgacatgtggggattatgggagctacaattcaagatgagattttggtgaggacacagccaaaccgtatc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79693716 185 + 112192347 aaaagggggaaaagccccatataaaaccatcagatctcatgaga----actcataatcatgagaatagcatgaaggtaaccatcctcatgattaaattacctccgaccacatctctcccatgacatgtggggattatgggagctacaattcaagaggagattttggtgaggacacagccaaaccgtatc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80774356 185 + 112612857 aaaagggggaaaagccccatataaaaccatcagatctcatgaga----actcacaatcatgagaatagcatgaagataaccatcctcatgattaaattacctccgaccacatctctcccatgacatgtggggattatgggagctacaattcaagaggagattttggtgaggacacagccaaaccgtatc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76823669 185 + 107442819 aaaagggggaaaagccccatataaaaccatcagatctcatgaga----actcacaatcatgagaatagcatgaagGTAACCATcctcatgattaaattacctccgaCCACAtctctcccatgacatgtggggattatgggagctacaattcaagaggagattttggtgaggacacagccaaaccgtatc i papAnu2.chr15 C 0 C 0 s calJac3.chr1 111310064 189 - 210400635 aaaaggtggaaaatctccttataaaaccatcagatctcaagagaactcactcacaattatgagaacagcatgaaggtaaccaccctcatgattaaattacctcccatcaggtctctgtcatgacatgtggggattatgggagctataatccaagatgaaattttggtgaggatacagccaaaccatatc i calJac3.chr1 C 0 C 0 a score=244038.000000 s hg38.chr9_GL383541v1_alt 2712 87 + 171286 agtccttgttttcaa------------tgtatctagaagtgaaactgctggatcatatggtaattct--ctttaaattttgaggaacagccatactgtttt s panTro4.chr9 68568369 89 + 137840987 agtccttgttttcaa------------tatatctagaagtgaaactgctggatcatatggtaattctatgtttaaattttgaggaacagccgtactgtttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64721717 87 + 135191526 agtccttgttttcaa------------tatatctagaagtgaaactgctggatcatatggtaattct--gtttaaattttgaggaacagccatactgtttt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57761106 87 - 122973662 agtccttgttttcaa------------tatatctagaagtaaaactgctggatcatatggtaattct--atttaaattttgaggaacagccatactatttt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79693901 89 + 112192347 agtccttgttttcaa------------tatatctagaagtgaaactgctggatcatatggtaattctatgcttaaattttgaggaacagccatactgtttt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80774541 89 + 112612857 agtccttgttttcaa------------tatatctagaagtgaaactgctggatcataaggtaattctatgcttaaattttgaggaacagccatactgtttt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76823854 89 + 107442819 agtccTTGTTTTCAA------------TATATCTAGAAGTGAAactgttggatcatatggtaattctatgcttAAATTTTGAGGAACagccatgctgtttt i papAnu2.chr15 C 0 C 0 s calJac3.chr1 111310253 89 - 210400635 agtccttgttttcaa------------tatatctagaagttaaactgctggatcatatggtaattctatgtttaaattttgaggaacagccatactgtttt i calJac3.chr1 C 0 C 0 s canFam3.chr1 35212024 99 - 122678785 agtccttcctttcaactcttctgcatgtatagtttgaagtagagttgctgaaacatatggtaattct--gtttccatttagaagaactgccatactgtttc i canFam3.chr1 N 0 C 0 a score=1663975.000000 s hg38.chr9_GL383541v1_alt 2799 513 + 171286 ccacagcatctgcac-tgttttacattctcactagcaatacacaaaggctccagtttctccacattctcatcaacacttctttttgt---ttttttgataatagtgatcctaatgggtatgaaatggtTAATCAGTTCTATTTTAAGTGATAT---CCATAATAGGCTTGTGTCACATTTGCAGTGGTCCATCGTCTtctgaagagcttttctaagtatgggaaacttccatgttatactttctgcccttgcaatacagaactcagatttcaaatccccagcttccctttcagctagaataaaatcacgtggcctggactctactaatcagatgcacccctgtgagatttaaattcccaagtaacgagcaaaagatataagctcttttcactgttttcattttgtaggattgtgtgatggcaatggagtcttagttttggg-gacattaacagttgcaataggtccagtgcagtcaggttccaggtctctagggtgacagtagcatttgtttatcaagcca s panTro4.chr9 68568458 513 + 137840987 ccacagcatctgcac-tgttttacattctcatcagcaatacacaaaggctccagtttctccacattctcatcaacacttctttttgt---ttttttgataatagtgatcctaatgggtatgaaatggtTAATCAGTTCTATTTTAAGTGATAT---CCATAATAGGCTTGTGTCACATTTGCAGTGGTCCATCGTCTtctgaagagcttttctaagtatgggaaacttccatgttataatttctgcccttgcaatacagaactcagagttcaaatccccagcttccctttcagctagaataaaatcacgtggcctggactctacgaatcagatgcacccctgtgagatttaaattcccaagtaacgagcaaaagatataagctcttttcactgttttcattttgtaggattgtgtgatggcaatggagtctgagttttggg-gacattaacagttgcaataggtccagtgcagtcaggttctaggtctctagggtgacagtagcatttgtttatcaagcca i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64721804 513 + 135191526 ccacagcatctgcac-tgttttacattctcactagcaatacacaaaggctccagtttctccaccttctcatcaacacttctttttgt---ttttttgataatagttatcctaatgggtatgaaatggtTAATCAGTTCTATTTTAAGTGATAT---CCAtaataggcttttgtcacatttgcagtggtccatcatcttctgaagagcttttctgagtatgggaaacttccaggttataatttctgcccttgccatacagaactcagagttcaaatccccagcttccctttcagctagaataaaatcatgtggcctggactctactaatcagatgcacccctgtgagatttaaattcccaagtaacgaacaaaagatataagctcttttcactgttttcattttgtaggattgtgtggtggcaatgaagtctgagttttggg-gacattaacagttgcaataggtccagtgcagtcaggttccacgtctctaggttgacagtggcatttgtttatcaagcca i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57761193 513 - 122973662 ccacagcatctgcac-tgttttacattctcactagcaatacacaaaggctccagtttctccacattctcatcaacacttctttttgt---ttttttgataatagttatcctaatgggtatgaaatggtTAATCAGTTCTATTTTAAGTGATGT---CCAGAATAGGCTTGTGTCATATTTGCAGTGGTCCATCGTCTTCTGAAGAGCTTTTCTAAGTATGGGAAACTTCCATGTTATAATTTCTGCCCTTGCAATACAGAACTCAGAGTTCAAACCcccagcttccctttcagctagaataaaatcacgtggcctggactctactaatcagatacacccgtgtgagatttaaaTTCCCAAGTAACAAACAAAAGATATAAGCGCTTTTCACTGTTTTCATTTTGTAGGATTGTGTGGTGGCAATGGAGTCTGAGTTCTGGG-GACATTAACCGTTGCAATAGGTCCAGTGCAGTCAGGTTCCAGGTCTGTAGggtgacagtggcatttgtttatcaagcca i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79693990 509 + 112192347 ccacagcatctgtac-tgttttacattctcaccagcaatacacaaagtctccaatttctccacattcttatcaacacttctttttgggttttttttgatagtagttatcctaatgggtatgaaatggtTAATCAGTTCTATTTTAAACGATAT---CCATAATAGGTTTGTGTCACATTTGCAGTGGTCCATCGTCTtctgaagagcttttctaagtatgggaaacttccaaacttgcatttctgcccttgcaatacagaactcagagttcaaatccccagcctccctttcagctagaataaaatcacgtggcctggactctactaatcagatgcacccatgtgagatttaaatTTCCAAGTAATGAACAAAAGATATAAGCTATTTTCACTATTTTCGTTTTGTAGGATTGTGTGGTGGCAATGGAGTCTGAGTTTTGGA-GACATTCACAGTTGCAATAGGTCCAGTGCAG-------CCAGGTCTTTTGGGTGACAGTGGCATTTGTTTAACAAGcca i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80774630 509 + 112612857 ccatagcatctgtac-tgttttacattctcaccagcaatacacaaaggctccaatttctccacattcttatcaacacttctttttgggttttttttgatagtagttatcctaatgggtatgaaatggtTAATCAGTTCTATTTTAAACGATAT---CCATAATAGGCTTGTGTCACATTTGCAGTGGTCCATCGTCTtctgaagagcttttctaagtatgggaaacttccaaacttgcatttctgcccttgcaatacagaactcagagttcaaatccccagcctccctttcagctagaataaaatcacgtggcctggactctactaatcagatgcacccacgtgagatttaaatTTCCAAGTAATGAACAAAAGATATAAGCTATTTTCACTGTTTTTGTTTTGTAGGATTGTGTGGTGGCAATGGAGTCTGAGTTTTGGA-GACATTCACAGTTGCAATAGGTCCAGTGCGG-------CCACGTCTTTTGGGTGACAGTGGCATTTGTTTAACAAGcca i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76823943 508 + 107442819 ccacagcatCTGTAc-tgttttacattctcaccagcaatacACAAaggctccaatttctccacattctcatcaacacttcttttt-ggttttttttgatagtagttatcctaatgggtatgaaatGGTTAATCAGTTCTATTTTAAACGATAT---CCATAATAGGCTTGTGTCACATTTGCAGTGGTCCATCGTCTTCTGAAGAGCTTTTCTAAGTATGGGAAAGTTCCAAACTTGCATTTCTGCCCTTGCAATACAGAACTCAGAGTTCAAATCCCCAGCCTCCCTTTCAGCTAGAATAAAATCACGTGGCCTGGACTCTACTAATCAGATGCACCCACGTGAGATTTAAATTTCCAAGTAATGAACAAAAGATATAAGCTATTTTCACTGTTTTCATTTGGTAGGATTGTGTGGTGGCAATGGAGTCTGAGTTTTGGA-GACATTCACAGTTGCAATAGGTCCAGTGCAG-------CCAGGTCTTTTGGGTGACAGTGGCATTTGTTTAACAAGCCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81087134 506 + 108555830 ccacagcgtctgtac-tgttttacattctcaccagcaatacacaaaggctccaatttctccgcattctcatcaacacttctttttgg---ttttttgatagtagttatcctaatgggtatgaaatggttaatcagttctattttaaGCGATAT---CCATAATAGGCTTGTGTCACATTTGCAGTGGTCCATCGTCTtctgaagagcttttctaagtatgggaaacttccaaacttgcatttctgcccttgcaatacagaactcagagttcaaatcctcagcctccctttcagctagaataaaatcacatggcctggactctactaatcagatgcacccacatgagatttaaatTTCCAAGTAACGAACAAAAGATACAAGCGATTTTCACTGTTTTCATTTTGTAGGATTGTGTGGTAGCAATGGAGTCTGAGTTTTGGG-GACATTCACAGTTACAATAGGTCCAGTGCAG-------CCAGGTCTTTAGGGTGACAGTGGCATTTGTTTAACAAGcca i chlSab2.chr12 N 0 C 0 s calJac3.chr1 111310342 484 - 210400635 ccactgcatctgcac-cattttacattctcactagcaatacacaaaa-ctccaatttctccacattctcatcaaca----tttttgt---cttcttgataatcattatcctaatgggtacaaaat-gttaATCAGTTATATTTTAAGTGATAC---CCATAATAGGCTTGTGTCACATT--------------GTCTtctgaagaacttttctaagtatgggaaacttctatgttataagttctgcccttgcaatacaaaactcagagttcgaattgccagcttccctttcagctagaataaaatcatgtggcctggattctactaatcagatgcaaccatgtgagatttaaatTCCCAAGTAAAAAACAAAAGATATAAGCTATTTTGACTG--TTCATTTTGTAGAATTGTGTGGTGACAATGGAGTCTGACTTTTGGG-GACATTAACAATTGCAGTAGGTCCAGTGCAG-------TCAGGGATCTAGGGTGACAATGGCGTTTGTTTATCAAGCca i calJac3.chr1 C 0 I 530 s canFam3.chr1 35212123 510 - 122678785 tcatagtggctatactttttttttattcccaccaacaaggcacaagtgttacagtttttccacatctttgccaacacttaaaaaaaa------attcataatagccattctaataggtgtg-agtggtTAATCAATTATATTTTAAACAGTATTAGCtatggtggacatgtgttacatttgcagtgac---ttctattctgaaaagcttttctgaatatagagaatttccatgttatatgttcttcctctccattacagaactcagaactcaaatcccca-ccttcttttcaccaagaataaaatcatgtgacccagactcaactaatcagatgcatctatgcaagatttaaattcctgcaagaccaacaacagtgataagctctcttcggtgctttggttctattggcttgggtgttggcagtggaatctggctttggggaggcattaacaattgcaataggtctaatgcagtcaagttcccaatgtgtaggccgatggtggcatttcctcagcaagtca i canFam3.chr1 C 0 C 0 a score=1285480.000000 s hg38.chr9_GL383541v1_alt 3312 483 + 171286 tttctgtggcatgattttgg--actgttcctggaagcttagcatcaa---------------------------tccagtctagtttaaaacttcaattgaataactaattgaatatttgtcttcaccctgccccatgccagcagctaggcttctactctagagccttcgagtggggaaagggcattgtcttcacattcattct----tctctctttttcctgtcctcttagtttctgcagtgtaggggcagggaggatggatg-aaaaaaataaagaatattcacctaactgggtgttattgtagtccgctctcagatatcatttccct-tctgTATTTAGGCACATGTGTAAATACCAGCTCGCTGGTGGtggacttttttttaatgtatggaagtggccagaaaactgtagaatctgcacaagatatcattaaagaacagccaagggagattca-tgaaagcatgattgaaagctgtaggtgaacaaaaatcaagccagcttgcattcacacctct s panTro4.chr9 68568971 494 + 137840987 tttctgtggcatgattttgg--actgtttctggaagcttagcatcaagcctatttttccaaccAATaaagtcaatccagggtagtttaaaacttcaattgaataactaattgaatatttgtcttcaccttgccccatgccagca------------ctctagagccttcgagtggggaaagggcattgtcttcacattcactct----tctctctttttcctgtcatcttagtttctgtagtgtaggggcagggaggatggatg-aaaaaaataa----tgttcacctaactgggtgttattgtagtcctctctcagatatcattcccct-tctgTATTTAGGCACATGTGTAAATACCAGCTCGCTGGTGGtggacttttttttaatgtatggaagtggccagaaaactgtagaatctgcacaaggtatcattaaagaacagccaagggagattca-tgaaagcgtgattgaaagctgtaggtgaacaaaaatcaaaccagcttgcattcacacttct i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64722317 509 + 135191526 tttctgtggcatgattttgg--actgttactggaagcttagcatcaaacctatttttccagccAATAAAGTCAATCCAGTCTAGTTTAAAACTTCAATTGAATAACTGATTGAATATTTGTCTTCACCCTGCCCCATGCCAGCAGCTAGGCTTCTACTCTAGAGCCTTCGAGTGGGGAAAGGGCATTGTCTTCACATTCACTCT----TCTCTCTTTTTCCTCTCATCTTTGTTTCTGCAGTGTAGGGGCAGGGAGGATGGATG-AAAAAAATAAAGGATGTTCACCTAATTGGGTGTTATTGTAGTCCTCTCTCAGATATCATTCCCCT-TCTGTATTTAGGCACATGTGTAAATACCAGCTCGCTGGTGGTGGAC-TTTTTTTAATGTATGGAATTGGCCAGAAAACTGTAGAATCTGCACAAGATATCATTAAAGAACAGCCAAGGGAGATTCA-TGAAAGCATGATTGAAAGCTGTAGGTGAACAAAAATCAAACCAGCTTGCATTCACACCTCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57761706 420 - 122973662 tttctgtggcatgattttgg--actgttcctggaagcttagcatcaagcctatttttccaaccAATaaagtcagtccagtctagtttaaaacttcaactgaataactaattgaatatttgtcttcaccctgccccatgccagcagctaggcttctactcaagagccttcgagtggggaaagggcattgtcttcacattcactct----tctctctttttcc-----tctcagtttctgcagtgtaggggcagggaggatggatg-aaaaaaataaagaatgttcacctaactgagtgttatggtagtcctctctcagatatcattcccct-tctgTATTTAGGCACATGTGTAAATACCAGCTCGCTGGTGGTGGAC---------------------------------------------CAAAAT-----------------------------------------TTGAAAGCTGTAGGTGAACAAAAATCAAACCAGCTTGCACTCACACCTCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79694499 507 + 112192347 tttctgtggcatgattttgg--actgttcctggaagcttagcatcaagcctatttttccaaccAATaaagtcaatccagtctagtttaaaacttcaactgaataactaattgaatatttgtcttcaccctgccccatgccagcagctaggcttctactctagagccttcgagtggggaaagggcattgtcttcacattcactct--------tctttttcctctcatcttagtttctgcagtgtagaggcagggaggatggatgaaaaaaaataaagaatattcacctaactgggtgttatggtagtcccctctcagatatcgttcccctctctgTATTTAGGCCCATGTGTAAATACCAGCTCGCTGGTGGtggac-ttttttatatatatggaagtggccagaaaactgcagaatctgcacaaggtatcattaaagaacagccaaggaagattca-tgaaagcatggttgaaagctgtaggtgaacaaaaatcaaaccagcttgcattcccacctct i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80775139 507 + 112612857 tttctgtggcatgattttgg--actgttcctggaaacttagcatcaagcctatttttccaaccAATAAAGTcaatccagtctagtttaaaacttcaactgaataactaattgaatatttgtcttcaccctgccccatgccagcagctaggcttctactctagagcctttgagtggggaaagggcattgtcttcacattcactct--------tctttttcctctcatcttagtttctgcagtgtagaggcagggaggatggatgaaaaaaaataaagaatattcacctaactgggtgttatggtagtcccctctcagatatcgttcccctctctgTATTTAGGCCCGTGTGTAAATACCAGCTCGCTGGTGGtggac-ttttttatatatatggaagtggccagaaaactgcagaatctgcacaaggtatcattaaagaacagccaaggaagattca-tgaaagcatggttgaaagctgtaggtgaacaaaaatcaaaccagcttgcattcccacctct i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76824451 511 + 107442819 TTTCTGTGGCATGATTTTGG--ACTGTTCCTGGAAGCTTAGCATCAAGCCTATTTTTCCAACCAATAAAGTCAATCCAGTCTAGTTTAAAACTTCAACTGAATAACTAATTGAATATTTGTCTTCACCCTGCCCCATGCCAGCAGCTAGGCTTCTACTCTAGAGCCTTTGAGTGGGGAAAGGGCATTGCCTTCACAttcactct----tctctctttttcctctcatCTTAGTTTCTGCAGTGTAAGGGCAGGGAGGAtggatgaaaaaaaataaagaatattcatCTAACTAGGTGTTATGGTAGTCCCCTCTCAGATATCGTTCCCCTCTCTGTATTTAGGCCCATGTGTAAATACAAGCTCGCTGGTGGTggac-ttttttatatatatggaaGTGGCCAGAAAACTGCAGAATCTGCACAAGGTATCATTAAAGAACAGCCAAGGAAGATTCA-TGAAAGCATGATTGAAAGCTGTAGGTGAACAAAAATCAAACCAGCTTGCATTCCCACCTCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81087640 510 + 108555830 tttctgtggcatgattttgg--actgttcctggaagcttagcatcaagcctatttttccaaccAATAAAGTcaatccagtctagtttaaaacttcaattgaataactaattgaatatttgtcttcaccctgccccatgccagcagctaggcttctactctagagcctttgagtggggaaagggcattgtcttcacattcactct----tctctctttttcctctcatcttagtttctgcagagtaggggcagggaggatggatg-aaaaacataaagaatattcacctaactgggtgttatggtagtcccctctcagatatcgttcccctctctgTATTTAGGCCCATGTGTAAATACCAGCTCactggtagtggac-ttttttatatatatggaagtggccagaaaactgcagaatctgcacaagatatcattaaagaacagccaagggagattca-tgaaagcatgattgaaagctgtaggtgaacaaaaatcaaaccggcttgcattcacacctct i chlSab2.chr12 C 0 C 0 s canFam3.chr1 35212633 479 - 122678785 tttctgtggtatgattgtgggtgttgttcctggaagctcatccccaagcctatttctacaaccAAAAAGTCCCATCCAA-------------TTCAATTGCATAATT---------CTTGTGTTCA---TGCCCCATGCCACCAATGAAGCTTCTgcctgggggttttgaagtggggaaagggcatagtctacacattcactctttcttctctctttttcctctagttttagttcttgcatagcaggggcagggaagatggatg-aagaaaagaaagaatgttcacctaact-ggtaccactgtagtcttttctCAGATAGCATTCCCCTTTCTGT-----GGCACATGTCTAAATACTAGCTGTCTGGTGGtgtac---ttttctatatgtgcaagtgaccagaa-----tagaatctacataagatgtcactaaaggatagccaagggaggttcagtaaaagaatagttgaaggcagcaagtggacaaacattgaacacattcacattcatatctct i canFam3.chr1 C 0 C 0 e calJac3.chr1 111310826 530 - 210400635 I a score=676918.000000 s hg38.chr9_GL383541v1_alt 3795 304 + 171286 ctgagttcagTC----tttttttttttttttttttt-------------ttttttgagacagattctcgttctgtcggtcaggctggagtgcagtggcacaatctcggctcactgcaacctccatctcccaggctcaagtaattcttttgcctcagcctcccgagtagctgagattacaggagtgtgccaccacacctggctaatttttgtatttttagtagagatggagtttcaccatgttggtcaggctggtctcgaactcctgacctcaggtaatccacccgcctcagcctcccaaagtgctgggattacaggcttga s panTro4.chr9 68569465 298 + 137840987 ctgagttcagTG----ttttttgttttttttttttt-------------------gagacagattctcgttctgtcggtcaggctggagtgcagtggcacaatctcggctcactgcaacctccatctcccaggctcaagtaattattttgcctcagcctcccgagtagctgagattacaggagtgtgccaccacacctggctaatttttgtatttttagtagagatggagtttcaccatgttggtcaggctggtctcgaactcctgacctcaggtaatccacccgcctcagcctcccaaagtgctgggattacaggcttga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64722826 317 + 135191526 CTGAGTTCAGTC----TTTTTTTTTCtttttcgttttcttttttgttgtttttttgagacagattctcgttctgtcggtcaggctggagtgcagtggcacaatctcggctcactgcaacctccatctcccaggctcaagtaattcttttgcctcagcctcccgagtagctgagattacaggcgtgtgccaccatgcctggctaatttttgtatttttagtagagatggagtttcaccatgttggtcaggcttgtctggaactcctgacctcaggtaatccacccgcctcagcctcccaaagtgctgggattataggcttga i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57762126 298 - 122973662 TTGAGTTCAGTC----ttttttctttcttttttttt-------------------gagacagattctcattctgtcggtcaggctggagtgcagtggcacaatctcggctcactgcaaactccatctcccgggctcaagtaattcttttgcctcagcctcctgagtagctgggattacaggcgtgtgccaccacgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggtcaggctggtctcgaacttctgacctcaggtaatctgcccgcctcagcctcccaaagtgctgggattacaggcttga i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79695006 296 + 112192347 ctgagttgagTC----tttttttttttttttttttt------------------tgagacagattctcgttctggcggtcaggctggagtgcagtggcacaatctcggctcactgcaacctccatctcctgggctcaagtaatttttttgcctcagcctcctgagtagctgagattactga---gtgccaccacgcctggctaatttttgtatttttagtaaagatggggtttcaccatgtttttcagactggtctcaaactcctgacttcaggtaatccacctgcctcagcctcccaaaatgctgggattacaggcttga i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80775646 300 + 112612857 ctgagttgagTCtttttttttttttttttttttttt------------------tgagacagattctcgttctggcggtcaggctggagtacagcggcacaatctcggctcactgcaacctccatctcctgggctcaagtaatttttttgcctcagcctcctgagtagctgagattactga---gtgccaccacgcctggctaatttttgtatttttagtaaagatggggtttcaccatgtttttcagactggtctcaaactcctgacttcaggtaatccacctgcctcagcctcccaaaatgctgggattacaggcttga i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76824962 293 + 107442819 CTGAGTtgagcg----tttttttttttttttttttt------------------gtagacagattCTCGTTCTGgcggtcaggctggagtgcagtggcacaatctcggctcactgcaacctccatctcctgggctcaagtaatttttttgcctcagcttcctgagtagctgagattactga---gtgccaccacgcctggctaa-ttttgta-ttttagtaaagatggggtttcaccatg-ttttcagactggtctcaaactcctgacttcaggtaatccacctgcctcagcctcccaaaatgctgggattacaggcttga i papAnu2.chr15 C 0 I 2450 s chlSab2.chr12 81088150 298 + 108555830 ctgagttcagTC--ttttttttttttttttttcttt------------------tgagacagattctcattctggcagtcaggctggagtgcagtggcacaatctcagctcactgcaacctccatctcctgggctcaagtaagtcttttgcctcagcctcctgagtagctgagattactga---gtgccaccacgcctggctaatttttgtatttttagtagagatggggtttcaccatgtttttcagactggtctcaaactcctgacctcaggtaatccacctgcctcagcctcccaaaatgctgggattacaggcttga i chlSab2.chr12 C 0 C 0 e canFam3.chr1 35213112 0 - 122678785 C e calJac3.chr1 111310826 530 - 210400635 I a score=26448.000000 s hg38.chr9_GL383541v1_alt 4099 14 + 171286 gccactgcgcctgg s panTro4.chr9 68569763 14 + 137840987 gccactgcgcctgg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64723143 14 + 135191526 gccactgcacctgg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57762424 14 - 122973662 gccactgcgcctgg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79695302 14 + 112192347 gccactgcacctgg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80775946 14 + 112612857 gccactgcacctgg i macFas5.chr15 C 0 C 0 s chlSab2.chr12 81088448 14 + 108555830 gccactgtgcctgg i chlSab2.chr12 C 0 C 0 e canFam3.chr1 35213112 0 - 122678785 C e calJac3.chr1 111310826 530 - 210400635 I e papAnu2.chr15 76825255 2450 + 107442819 I a score=413118.000000 s hg38.chr9_GL383541v1_alt 4113 232 + 171286 cTGCATTCAGACTACTTAACATGCTAATTACTGAAGGTGCAGCCATTTGAGGGCCCTGTTCTTACATGC---------------GCGG-------GGGGC----GGGCGTGTCGGTCTTGGTTCCAGCTGTTCACAGTCACTGGACCCATCTCCTGGCTTGGGACATACACTCA-GACATGACCTTTGTCACCTCCCTCCCCCAGTTTTGTCCAGTAGTGGAATATCCCATAGCCTTCAACTACTGGAGTCTCTTACTT s panTro4.chr9 68569777 232 + 137840987 cTGCGTTCAGACTACTTAACATGCTAATTACTGAAGGTGCAGCCATTTGAGGGCCCTGTTCTTACATGC---------------GCGG-------GGGGC----GGGGGTGTCGGTCTTGGTTCCAGCTGTTCACAGTCACTGGACCCATCTCCTGGCTTGGGACATACACTCA-GACATGACCTTTGCCACCTCCCTCCCCCAGTTTTGTCCAGTAGTGGAATATCCCATAGCCTTCAACTACTGGAGTCTCTTACTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64723157 236 + 135191526 ctGCGTTCAGACTACTTAACATGCTAATTACTGAAGGTGCAGCCATTTGAGGGCCCTGTTCTTACATGC---------------GCGGGG----TGGGGC----GGGGATGTCGGTCTTGGTTCCAGCTGTTCGCAGTCACTGGACCCATCTCCTGGCTTGGGACGTACACTCATTTCATGACCTTTGCCACCTCCCTCCCCTAGTTTTGTCCAGTAGTGGAATATCCCATAGCCTTCAACTACTGGAGTCTCTTACTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57762438 233 - 122973662 cTGCATTCAGACTATTTAACATGCTAATTACTGAAGGTGCAGCCATTTGAGGGCCCTGTTCTTATATGC---------------GTGG-------GGGGT---GGGGGGTGTCGTTCTTGGTTCCAGCTGTTCACAGTCACTGGACCCATCTCCTGGCTTGGGACATACACTCA-GGCATGACCTTTGCCACCTCCCTCCCCCAGTTTTGGCCAGTAGTGGAATATCCGATAGCCTGCAACTACTGGAGTCTCTTACTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79695316 255 + 112192347 ccGAGTTCAGACTTTTTCACATGCTAATTACTGAAGGTGCAACCATTTGAGGGCCCTGCTCTTATATGCCACGGGGAGTCA---GCGGGGGTGGGGGGGCAGGGGGGTGTGTCAGTCTCCGTTCCAGCTGCTCGCAGGCACTGGACCTATCTcctggcttggaacataccctca-ggcatgaccttttccacctccctcccccagttttggccagtagtggaatatcccacagcctccagctactggagtctcttattt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80775960 258 + 112612857 ccGAGTTCAGACTTTTTAACATGCTAATTACTGAAGGTGCAACCATTTGAGGGCCCTGCTCTTATATGCCACGGGGAGTCAGCGGCGGGGGGGTGGGGGCAGGGGGGTGTGTCAGTCTCGGTTCCAGCTGCTCGCAGGCACTGGACCTATCTcctggcttggaacataccctca-ggcatgaccttttccacctccctcccccagttttggccagtagtggaatatcccacagcctccagctactggagtctcttattt i macFas5.chr15 C 0 C 0 s chlSab2.chr12 81088462 255 + 108555830 ccAAGTTCAGACTTTTTTACATGCTAATTACTGAAGGTGCAACCATTTGAGGGCCCTGCTCTTATATGTGACGGGGAGTCG---GCGGGGGTGGGGGGGAAGGGGGGTGTGTCAGTCTTGGTTCCAGCTGTTTGCAGGCACTGGACCCATCTcctgacttggaacataccctca-ggcatgacctttgccaccttcctctccaagttttggcgagtagtggaatatcccacagcctccagctactggagtctcttattt i chlSab2.chr12 C 0 I 308 s canFam3.chr1 35213112 186 - 122678785 ctgaactgaggttgtctaccatgctggttacTAAAGGTATAGCTGTTCAAGGGCCCTGTTTTTATATG---------------------------GGAGT----------------------------------------CTAGATCCATCTcctgacctgggatatccattca-tacttggcgttta----catctgccccctgctttggtccacagtgaaacaccccaaagcctcttgctgctacagtc-cttgctt i canFam3.chr1 C 0 C 0 e calJac3.chr1 111310826 530 - 210400635 I e papAnu2.chr15 76825255 2450 + 107442819 I a score=284837.000000 s hg38.chr9_GL383541v1_alt 4345 135 + 171286 GATGGGTCATACTTTTAGGTGGGGCACTAGCAAG-CAGTTTAAGCCTAGCTATTTGTGgatccacatgaaacttatgcatctttgttccaccaaatagggtaagtattgactactgcacatttgcattctctctgt s panTro4.chr9 68570009 135 + 137840987 GATGGGTCATACTTTTAGGTGGGGCACTAGCAAG-CAGTTTAAGCCTAGCTATTTGTGgatccacatgaaacttatgcatcttttttccaccaaatagggtaagtattgactgctgcacatttgcattctctctgt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64723393 135 + 135191526 GATGGGTCATACTTTTAGGTAGGGCACTAGCAAG-CAGTTCAAGCCTAGCTATTTGTGGATCCACATGAAACTTATGCATCTTTGTTCCACCAAATAGGGTAAGTATTGACTGCTACACATTTGCATTCTCTCTGT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57762671 134 - 122973662 GATGGGTCATACTTTTAGGTTGTGCACTAGCAGG--AGTTCAAACCTAGCTATTTGTGgatccacatgaaacttacgcacctttgttccaccaaatagggtaagtattgactgctacacatttgcattctctctgt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79695571 135 + 112192347 gataggtcacacttttagatggggcactagtaag-cagttcaagcctagctatttgtggatccacatgaaacttatgcatctttgttccaccaaatagggtaagtactgactactacacatttgcattatctctGC i rheMac3.chr15 C 0 I 71 s macFas5.chr15 80776218 135 + 112612857 gataggtcacacttttagacggggcactagtaag-cagttcaagcctagctatttgtggatccacatgaaacttatgcatctttgttccaccaaatagggtaagtattgactactacacatttgcattatctctgt i macFas5.chr15 C 0 I 147 s chlSab2.chr12 81089025 135 + 108555830 gataggtcacacttttagatggggcactagtaag-cagttcaagcctagctatttgtggatccacatgaaacttatgcatctttgttccaccaaatagggtaagtattgactactacacatttgcattatctctgt i chlSab2.chr12 I 308 C 0 s canFam3.chr1 35213298 126 - 122678785 gattggttaccctcttgggtggggtattagcaagtcagctcaagcctggctacatgtggactcataggcaacttacacagctttgccccaccaagtagtgagagta----------cagatctgcattctctctgc i canFam3.chr1 C 0 C 0 e calJac3.chr1 111310826 530 - 210400635 I e papAnu2.chr15 76825255 2450 + 107442819 I a score=1309106.000000 s hg38.chr9_GL383541v1_alt 4480 616 + 171286 tctgtcacttttttcccctttctttttcttctgtacataaagatacagggcacagatcagcaagggcactgtctaaacagaacccaaactaaagaataagatgtca-taagatg--ctagatctctaagagtgatagatggagccctttttacatcgggggaatttggaaaaa-ggcagttttctttttctctcccaagggaagaggtgggaaaagcCACTATTCTCATCCTTCACCAGCAACACCCAACTTGCAGGATACTTTCTTCTCTCTCTAATCTCTCCTATACAGACTGGAGA---TGGTGGAAGAAAGAGTGGTGCAGGAGCTGTAGGAATAATT-------------GGGG-----GAGCCCATTTGGCCACTTCTTTAAAATCCCTGGAAGAATTGGCTGGCCTTAATTAGTTTCACTTATCTTTAAAATCTGGGGC--ATTGCACACCTCTCTTATCCACGGGCAATAAGTCATATTACACTCAGCATTCTATTACATCCACTCCCTAGATCTTTTTTT-CTGAGTAAAAGCCCATTTATTTATAGTCTCCTTCCAAAATTCCATATCTTTGAAC--------AAGATTATTCTTGTGTCTCCAGTGTTTTATCTTTGTGGCTATAATTTTTGTGTCCAGGG s panTro4.chr9 68570144 617 + 137840987 tctgtcacttttttcccctttctttttcttctgtacataaagatacaaggcacagatcagcaagggcactgtctaaacagaacccaaactaaagaataagatgtcaataagatg--ctagatctctaagagtgatagatggagccctttttacattgggggaatttggaaaaa-ggcagttttctttttctctcccaagggaagaggtgggaaaagcCACTACTCTCATCCTTCACCAGCAACACCCAACTTGCAGGATTCTTTCTTCTCTCTCTAATCTCTCCTATACAGACTGGAGA---TGGTGGAAGAAAGAGTGGGGCAGGAGCTGTAGGAATAATT-------------GGGG-----GAGCCCATTTGGCCACTTCTTTAAAATCCCTGGAAGAATTGGCTGGCCTTAATTAGTTTCACTTATCTTTAAAATCTGGGGC--ATTGCACACCTCTCTTATCCACAGGCAATAAGTCATATTACACTCAGCATTCTATTACATCCACTCCCTAGATCTTTTTTT-CTGAGTAAAAGCCCATTTATTTATAGTCTCCTTCCAAAATTCCATATCTTTGAAC--------AAGATTATTCTTGTGTCTCCAGTGTTTTATCTTTGTGGCTATAATTTTTGTGTCCAGGG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64723528 617 + 135191526 TCTGTCACTTTTTTCCCTTTTCTTTTTCTTCTGTACATAAAGATACAGGGCACAGATCAGCAAGGGCACTGTCTAAACAGAACCCAAACTAAAGAATAAGATGTCAATAAGATG--CTAGATCTCTGAGAGTGATAGATGGAGCCCTTTTTACATTGGCGGAATTTGGAAAAA-GGCAGTTTCCTTTTTCTCTCCCAAGGGAAGAGGTGGGAAAAGCCACTACTCTCATCCTTCACCAGCAACACCCAACTTGCAGGATTCTTTCTTCTCTCTCTAATCTCTCCTATACAGACTGGAGA---TGGTGGAAGAAAGAGTGGGGCAGGAGCTATAGAAATAATT-------------GGGG-----GAGCCCACTTGGCCACTTCTTTAAAATCCCTGGAAGAATTGGCTGGCCTTAATTAGTTTCACTTATCTTTAAAATCTGGGGC--ACTTCCCACCTCTCTTATCCATGGGCAATAAGTCATATTACACTCAGCATTCTATTACATCCACTCCCTAGATCTTTTTTT-CTGAGTAAAAGCCCATTTATTTAAAGTCTCCTTCCAAAATTCCATATCTTTGAAC--------AAGACTATTCTTGTGTCTCCAGTGTTTTATCTTTGTGGCTATAATTTTTGTGTCCAGGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57762805 616 - 122973662 tctgtcacttttttcccctttctttttcttctgtacataaagatacagggcacagatcagcaagggcactgtctaaacagaacccaaactaaagaataagatgtcaataagatg--ctagatctctgagagttatagatggagccctttttacattgggggaatttggaaaaa-ggccgtttcctttttctctcccaaggggagaggtgggaaaagcCACTACTCTCATCCTTCATCAGCAACACCCAACTTGCAGGATTCTTTCTTCTCTCTCTAATCTCTCGTATACAGACTGGAGA---TGGTGGAAGAAAGAGTTGGGCAGGAGCTGTAGGAATAATT--------------GCG-----GAGCCCATTTGGCCACTTCTTTAAAATCCCTGGAAGAATTGGCTGGCCTTAATTAGTTTCACTTATCTTTAAAATCTGGGGC--ATTTCACACCTCTCTTATCCATGGGCAATAAGTCATATTACACTCAGCATTCTATTACATCCACTCCCTAGATCTTTTTTT-CTGAGTAAAAGCCCATTGATTTATAGTTTCCTTCCAAAATTCCATATCTTTGAAC--------AAGACTATTCTTGTGTCTCCAGTGTTTTATCTTTGTGGCTATAATTTTTGTGTCCAGGA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79695777 633 + 112192347 tctgtcacttttttcccctttctttttcctctgtatataaagatacagggcacagatcagcaagggcactgtctaaacagaacccaaactaaacaataagatgtcaatAAGATG--CTAGATCTCTGAGAGTGATGGATGGACCCCTTTTTACATTGGGGGAATTTGGAAAAA-GGCAGTTTCCTTTTTCTCTCCCAAGGGGAGACGTGGGAAAAGCCACCACTCTCATCCTTCACCAGCAACACCCAACTTGCAGGATTCTTTCTTCTCTCTCTAATCTCTCCTATACGGACTGGAGATGGTGGTGGAAGAAAGAGTAGGGCAGGAGCTGTAGGAATAATTGGGGGAGCTAATTGGGG-----GAGCCCATTTGGCCACTTCTTTAAAATCCCTGGAAGAATTGGCTGGCCTTAATTAGTTTTACTTATCTTTAAAATCTGGGAC--ATTTCACACCTCTCTTATCCATGGACAAAAAGTCATATTACACTCGGCATTCTATTACATCCACTCCCTGGATCTTTTTTT-CTAAGTAAAAGCCACTTTATTTATAGTTTCCTTCCAAAATTCCATATCTTTGAAC--------AAGACTATTCTTGTGTCTCCAGTGTTTTATCTCTGTGGCTGTAATTGTTGTGTCCAGGG i rheMac3.chr15 I 71 C 0 s macFas5.chr15 80776500 633 + 112612857 tCTGTCACTTTTTTCCCCTTTCTTTTTCCTCTGTATATAAAGATACAGGGCACAGATCAGCAAGGGCACTGTCTAAACAGAACCCAAACTAAACAATAAGATGTCAATAAGATG--CTAGATCTCTGAGACTGATAGATGGACCCCTTTTTACATTGGGGGAATTTGGAAAAA-GGCAGTTTCCTTTTTCTCTCCCAAGGGGAGACGTGGGAAAAGCCACCACTCTCATCCTTCACCAGCAACACCCAACTGGCAGGATTCTTTCTTCTCTCTCTAATCTCTCCTATACGGACTGGAGATGGTGGTGGAAGAAAGAGTAGGGCAGGAGCTGTAGGAATAATTGGGGTAGCTAATTGGGG-----GAGCCCATTTGGCCACTTCTTTAAAATCCCTGGAAGAATTGGCTGGCCTTAATTAGTTTTACTTATCTTTAAAATCTGGGAC--ATTTCACACCTCTCTTATCCATGGACAAAAAGTCATATTACACTCGGCATTCTATTACATCCACTCCCTGGATCTTTTTTT-CTAAGTAAAAGCCACTTTATTTATAGTTTCCTTCCAAAATTCCATATCTTTGAAC--------AAGACTATTCTTGTGTCTCCAGTGTTTTATCTCTGTGGCTGTAATTGTTGTGTCCAGGG i macFas5.chr15 I 147 C 0 s chlSab2.chr12 81089160 633 + 108555830 tctgtcacttttttcccctttctttttcctctgtgtataaagatacagggcacggatcagcaagggcagtgtctaaacagaacccaaactaaacaataagatgtcaataagatg--ctagatctctgagagtgatagatggacccctttttacattgggggaatttggaaaaa-ggcagtttcctttttctctcccaaggggagacgtgggaaaagcCACCACTCTCATCCTTCACCAGCAACACCCAACTTGCAGGATTCTTTCTTCTCTCTCTAATCTCTCCTATACGGACTGGAGATGGTGGTGGAAGAAAGAGTAGGGCAGGAGCTGTAGGAATAATTGGGGGAGCTAATTGGGG-----GAGCCCATTTGGCCACTTCTTTAAAATCCCTGGAAGAATTGGCTGGCCTTAATTAGTTTTACTTATCTTTAAAATCTGGGAC--ATTTCACACCTCTCTTATCCATGGACAAAAAGTCATATTACACTCGGCATTCTATTACATCCACTCCCTGGATCTTTTTTT-CTAAGTAAAAGCCACTTTATTTACAGTCTCCTTCCAAAATTCCATATATTTGAAC--------AAGACTATTCTTGTGTCTCCAGTGTTTTATCTCTGTGGCTGTAATTGTTGTGTCCAGGG i chlSab2.chr12 C 0 C 0 s canFam3.chr1 35213424 604 - 122678785 cctgtcatctctttcca-tttattttccccctgcacatataggaacagggcacagatcagcaagcccactgtataaacaaaa-gcaaactaaggaataaactgttgataagatgctctgaatctttgagaataatgtttggatcccatttcacattagtgagatttggaaaaacagccacatcccttttctctcccaaggaaagaagagggaaaAGTCACAATACTCATCCTTCCCCAGCAATACCCAAATTATAGGATTGTCCTTTCTCTCCCTAACC-------TGGAGACTGGACA------TGGAAGGGAGTATGGGGCAGAGGTTGAGGTGATAATA-------------GGGGTTACAGAGCTCATTCAGCTGCTTCTTAATAATTCCTGGAAGAATTCCCTGGGCCCAACTGGTTTTATTTTTCTGTAAAATCTAGGGCATATTTATCTCATCTTTTATCTCAGGGCAATAGCTCATGTTCTACTCAGCAAT----------CATTCTCTAGATATTTTTTTCCTGGGCAAAACCC---------ATAGTCTCCTTTCAGAAAGTTACATATTTGCATTTCAGCAAAAGACTCTTC-TATGTCTCCAGTGGTTTATCTTTATGGATATAATTTTTGTGTTCAGGG i canFam3.chr1 C 0 I 296 e calJac3.chr1 111310826 530 - 210400635 I e papAnu2.chr15 76825255 2450 + 107442819 I a score=449833.000000 s hg38.chr9_GL383541v1_alt 5096 251 + 171286 GGgtattagtctgttttcacactgctatcaaggcactgcttgagactgggtaatttataaagaaaagaagtttaattgactcacagttctgcatggctgtggaggcctcaggaaacttacaatcatggcagaagatgaaggagaagcaagcaccttcttcacaaggcaccaggagagagagcaaaagaacgaggacgtggcacacttaaaaccatcggctttcatgagaactccctcactgtcactagaac s panTro4.chr9 68570761 250 + 137840987 GGgtattagtctgttttcacactgctatcaaggcactgcttgagactgggtaatttataaagaaaagaagtttaattgactcacagttctgcatggctgtggaggcctcaggaaacttacaatcatggcagaagatgaag-agaagcaagcaccttcttcacaaggcaccaggagagagagcaaaagaacgaggaagtggcacacttaaaaccatcggctttcatgagaactccctcactgtcactagaac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64724145 251 + 135191526 GGgtattagtctgttttcacaccgctatcaaggcactacttgagactgggtaatttataaagaaaagaggtttaattgactcacagttctgcatggctgtggaggcctcaggaaacttacaatcatggcagaagatgaaggagaagcaaacaccttcttcacaaggcaccaggagagagagcaaaagaacgaggaagtggcacacttaaaaccatcgactttcatgagaactccctcactgtcactagaac i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57763421 251 - 122973662 GGgtattaatctgttttcacactgctatcaaggcactacttgagactgggtaatttataaagaaaagaggtttaattgactcacagttctgcatggctgtggagacctcaggaaacttacaatcatggcagaagatgaaggagaagcaagaaacttcttcacaaggcaccaggagagagagcaaaagaacgaggaagtgccacacttaaaaccatcggctttcatgagaactccctcactatcactagaac i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79696410 250 + 112192347 GAgtattcgtctattttcacaatgctatcaaggcactacttgagactgggtaatttataaagaaaagaggttcaattgactcacagttctggatggctgtggcggcgtcaggaaacttacaattatggcagaagatgaaggagaagcaagcaccttcttcacaaagcaccagaagagagagcaaaagaaagaggaagtgccacacttaaaaccatcggctttcatgag-actccctcactatcactagaac i rheMac3.chr15 C 0 I 1384 s macFas5.chr15 80777133 250 + 112612857 GGgtattcgtctattttcacaatgctatcaaggcactacttgagactgggtaatttataaagaaaagaggttcaattgactcacagttctggatggctgtggaggcctcaggaaacttacaattatggcagaagatgaaggagaagcaagcaacttcttcacaaagcaccagaagagagagcaaaagaaaaaggaagtgccacatttaaaaccatcggctttcatgag-actccctcactatcactagaac i macFas5.chr15 C 0 I 1552 s chlSab2.chr12 81089793 250 + 108555830 GGgtattagtctattttcacgttgctatcaaggcactacttgagactgggtaatttataaagaaaagaggtttaattgactcacagttctgcatggctgtggaggcctcaggaaacttacagttatggcggaagatgaaggagaagcaagcaccttcttcacaaagcaccaggagagagagcaaaagaacgaggaagcaccacacttaaaaccatcggctttcatgag-attccctcactatcactagaac i chlSab2.chr12 C 0 I 1552 e canFam3.chr1 35214028 296 - 122678785 I e calJac3.chr1 111310826 530 - 210400635 I e papAnu2.chr15 76825255 2450 + 107442819 I a score=2301840.000000 s hg38.chr9_GL383541v1_alt 5347 771 + 171286 TGggattattaggctttttcctatagagttgttcaagctccttatatattctggttattaatcccttgtcagatgggtagttcataaatattttctcccattctgtgggttgtctcttcactttgttgattgtttccttgctgtgcagaagctttttaactcagtgtgatcccatttac-----tttgctttggttgtctgtgcttgtggggtatggctcaataaattttttcccagaacaatgtcatggagattttcctcaatgttttcttgtagt---------------------------------------------agtttcatagtttgaggtcatagatttaagtctttaatccattttgatttgatttttgtatatg--gcgagagataggggtctggtttcattcttctgcatatggatatacagtttccccagcaccatttgttgaagagactgtcttttccccagtgtatgttc-ttggcacatttgtcaaaaacgaattcattgtaggtgtttggcacatatattgaaaataagttcactgtaagtgtgtggatttgtttctgggttctgtattggtctatgtgtctgtttttatgtc-ttaccatactgttttggttactacaggtctgtagcataatttgaagtcaggtaatatgattcctctagttttgttctttttgcttaggatagctttgggtattctgggtcttttgtggttccatatgaatttttggacttttt-aatatttctgtaaagaatcttattggtattttgatagagatttcattgaatctgtagattgctttgggcc s panTro4.chr9 68571011 777 + 137840987 TGggattattaggctttttcctatagagttgttcaagctccttatatattctggttattaatcccttgtcagatgggtagttcataaatattttctcccattctgtgggttgtctcttcactttgttgattgtttccttgctgtgcagaagctttttaactcagtgtgatcccatttacccatttttgctttggttgtctgtgcttgtggggtatggctcaataaattttttcccagaacaatgtcatggagattttcctcaatgttttcttgtagt---------------------------------------------agtttcatagtttgaggtcatagatttaagtctttaatccattttgatttgatttttgtatatg--gcgagagataggggtctggtttcattcttctgcatatggatatacagtttccccagcaccatttgttgaagagactgtcttttccccagtgtatgttc-ttggcacatttgtcaaaaacgaattcattgtaggtgtttggcacatatgttgaaaataagttcactgtaagtgtgtggatttgtttctgggttctgtattggtctatgtgtctgtttttatgtcagtaccatactgttttggttactacaggtctgtagcataatttgaagtcaggtaatatgattcctctagttttgttctttttgcttacgatagctttgggtattctgggtcttttgtggttccatatgaatttttggacatttt-aatatttctgtaaagaatcttattggtattttgatagagatttcattgaatctgtagattgctttgggcc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64724396 777 + 135191526 TGggattattaggcttttacctatagagttgttcaagctccttatatattctggttattaatcccttgtcagatgggtagttcataaatattttctcccattctgtgtgttgtctcttcactttgttgattgtttccttgctgtgcagaagctttttaactcagtgtgatcccatttacccatttttgctttggttgtctgtgtttgtagggtatggctcaataaatttttgcccagaacaatgtcctggagattttccccaatgtttccttgtagt---------------------------------------------agtttcatagtttgaggtcatagatttaagtctttaatccattttgatttgatttttgtatatg--gtgagagataggggtctggtttcattcttctgcatatggatatacagtttccccagcaccatttgttgaagagactgtcttttccccagtgtatgttc-ttggcacatttgtcaaaaacgaattcactgtaggtgtttggcacatttgttgaaaataagttcactgtaagtgtgtggatttgtttctgggttctgtattggtctatgtgtctgtttttatgtcagtaccatactgttttggttactacaggtctgtagcataatttgaagtcaggtaatatgattcctctagttttgttctttttgcttaggatatctttgggtattctgggtcttttgtggttccatatgaatttttggacttttt-aatatttctgtgaagaatcttattggtattttgatagagatttcattgaatctgtagattgctttgggcc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57763672 777 - 122973662 TGggattattaggctttttcctatagagttgttcaagctccttatatattctggttattaatcccttgtcagatgagtagttcataaatattttctcccattctgtgggttgtctcttcactttgttgattgtttccttgctgtgcagaagctttttaactcagtgtgatcccatttacccatttttgctttggttgtctgtgcttgtggagtattgctcaataaatttttgcccagaacaatgtcctggagattttccccaatgttttcttgtagt---------------------------------------------agtttcatagtttgaggtcatagatttaagtctttaatccatttttatttgatttttgtatatg--gcgagagataggggtctggtttcattcttctgcatatggatatacagtttccccagcaccatttgttgaagagactgtcttttccccagtgtatgttc-ttggcacatttgtcaaaaacgaattcactgtaggtgtttggcacatttgttgaaaataagttcactgcaagtgtgtggatttgtttctggggtctgtattggtctatgtgtctgtttttatgtcagtaccatactgttttggttactacaggtctgtagcataatttgaagtcaggtaatatgattcctctagttttgttctttttgcttaggatagctttgggtattctgggtcttttgtggttccatatgaatttttggacttttt-aatatttctgtaaagaatcttattggtattttaatagagatttcattgaatctgtagattgctttgggcc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79698044 765 + 112192347 tgggattattaggctttttcctatagagttgttcaagctccttatatattctggttattaatctattgtcagatgtgtagttcataaatattttctcctattctgtgggttgtct-----ctttgtttattgtttccttgctgtgcagaagctttttaactcaatgtgaccccatttgtccatttttgctttggttgtctgtgcttgtggggtatgtctcaataaatttttgcccagaacaatgtcctggagattttccccatggttttcttgtagt---------------------------------------------agtttcatagtttgaggtcatagatttaagtctttaatccattttgatttgatttttgtataag--gagagagagagaggtctggtttcattcttctgcatatggatatccagtttcctcagcaccatttgttgaagagactgtcttttctctagtgtatgttctttgacacatttgtcaaaaatgaattcactgtaggtgtttggcacatttgttgaaaatgagttcact----gtgtatggatttgtttctgggttctatgttggtctatgtgtctgtttttatgtcagtaccatactgttttggttactataggtctgtagcataatttgaagtcgggtaat---attcctctagttttgttctttttgcttaggatagctttgagtattctgggtcttttgtggttccatatgaatttttggacttttt-tatatttctgtaaagaatcttattggtattttgataga-atttcattgaatctatagattgctttgggcc i rheMac3.chr15 I 1384 C 0 s macFas5.chr15 80778935 772 + 112612857 tgggattattaggctttttcctatagagttgttcaagctccttatatattctggttattaatctattgtcagatgtgtagttcataaatattttctcctattctgtgggttgtctcttcactttgtttattgtttccttgctgtgcagaagctttttaactcaatgtgatcccatttatccatttttgctttggttgtctgtgcttgtggggtatgtctcaataaatttttgcccagaacaatgtcctggagattttccccatggttttcttgtagt---------------------------------------------agtttcatagtttgaggtcatagatttaagtctttaatccattttgatttgatttttgtataaggagagagagagagaggtctggtttcattcttctgcatatggatatccagtttccccagcaccatttgttgaagagactgtcttttctctagtgtatgttctttggcacatttgtcaaaaatgaattcactgtaggtgtttggcacatttgttgaaaatgagttcact----gtgtatggatttgtttctgggttctatgttggtctatgtgtctgtttttatgtcagtaccatactgttttggttactataggtctgtagcataatttgaagtcgggtaat---attcctctagttttgttctttttgcttaggatagctttgagtattctgggtcttttgtggttccatatgaatttttggacttttt-tatatttctgtaaagaatcttattggtattttgataga-atttcattgaatctatagattgctttgggcc i macFas5.chr15 I 1552 C 0 s papAnu2.chr15 76827705 770 + 107442819 tgggattattaggctttttcctatagagttgttcaagctccttacatattctggttattaatctcttgtcagatgtgtagttcataaatattttctcctattctgtgggttgtctcttcactttgtttattgtttccttgctgtgcagaagctttttaactcaatgtgatcccatttatctatttttgctttggttgtctgtgcttgtggggtatgtctcaataaatttttgcccagaacaatgtcctggagattttccccatggttttcttgtagt---------------------------------------------agtttcatagtttgaggtcatagatttaagtctttaatctatttttatttgatttttgtataag--gagagagagagacgtctggtttcattcttctgcatatggatatccagtttccccagcaccatttgttgaagagactgtcttttctctaGTGTATGTTCTTtggcacatttgtcaaaaatgaattcactgtaggtgtttggcacatttgttgaaaatgagttcact----gtgtatggatttgtttctgggttctatattggtctatgtgtctgtttttatgtcagtaccatactgttttggttactataggtctgtagcataatttgaagtcaggtaat---attcctctagttttgttctttttgcttaggatagctttgagtattctgggtcttttgtggttccatatgaatttttggacttttt-tacatttctgtaaagaatcttactggtattttgataga-atttcattgaatctatagattgctttgggcc i papAnu2.chr15 I 2450 C 0 s chlSab2.chr12 81091595 770 + 108555830 tgggattattaggctttttcctatagagttgttcaagctccttatatattctggttattaatcacttgtcagatgggtagttcataaatattttctcccattctgtgggttgtctcttcactttgttgattgtttccttgctgtgcagaagctttttaactcaatatgatcccatttatccatttttgctttggttgtctgtgcttgtggggtatggctctataaatttttgcccagaacaatgtcctggagattttccccgttgttttcttgtagt---------------------------------------------agtttcatagtttgaggtcatagatttaagtctttaatccatttaggtttgatttttgtatatg--gagagagataggggtctggtttcattcttctgcatatggatatccagtttccccagcaccatttgttgaacagactgtcttttctctagtgtatgttc-ttggcacatttgtcaaaaatgaattcactgtaggtgtttggcacatttgttgaaaatgagttcact----gtgtatggatttgtttctgggttctgtattggtctatgtgtctgtttttatgtcagtaccatactgttttggttactacaggtctgtagcataatttgaagttgggtaat---attcctctagttttgttctttttgcttaggatagctttgagtattctgggtcttttgtggttccatatgaatttttggacttttt-tatatttctgtaaagaatcttattggtattttgatagagatttctttgactctgtagattgctttgggcc i chlSab2.chr12 I 1552 C 0 s calJac3.chr1 111311356 811 - 210400635 tgggattattagactctt--ctataga---gttcaagctccttgtgtattctggttattaatcccttgtctgatggatagttagcaaatattttctcccattttgtggtttgtctcttcactttgttgattgcttcct-----tgcagaagctttttaacttgatgtgatcccatttatctatttttgctttggttgcctatacttgtggggtgtggctcaataaatttttgcccagaacaatgtcctggagattttacccaatgttttcttgtagtagtttcatagtttgatgtcttagatttaagtctttgacgtctttaagtttcatagtttgagatcatagatttaagtctttaatccattttgatttgatttttgtatatg--gtgagagataggggtctagtttcattcatctgcatatggatatccagtttccccagcaccatttgttgaagacagtgtcttttccccagtgtatgttc-ttggcacatttgtcaaaaatgattttactgtaggtgtttaggacatttgttgaaaatgagttcactgtaagtgtatggatttgtttctgggttctgtattggtttatgtgtgt-tttttatgtaaatattatactattttggttactacaggtctgtagtataatttgaagtcaggtaatataattcctctggttttgcactttctgcttaggatagctttgggtattctgggtcttttgtggttccatatgaactttaggattttttaaatatttccgtaaagaatgtcattggtattttgatagggattttattgaatctg-atactggtttgagcc i calJac3.chr1 I 530 C 0 e canFam3.chr1 35214028 296 - 122678785 I a score=902744.000000 s hg38.chr9_GL383541v1_alt 6118 293 + 171286 ctcatgcttttaatatagtaatagtgtaattttgcttagatcaatgatcagtgtttatattattcta------agtgtaaCTGGcttttgagtgtgactcacttt-tgctcttataaagctttta---acatctcgttc---ccattgttctgatatttcacaatgatatgccttgctatgaatctattttcattcattgttctgagaacttagtgagactttcagtctggaaattcatgtatctgaattcagaaaatttccttaaattatttcta----tttttttcttattca--------------------------------------ccttattctcttc---------------------------------------------------------------------tt s panTro4.chr9 68571788 293 + 137840987 ctcatgcttttaatatagtaatactgtaattttgcttagatcaatgatcagtgtttatattattcta------agtgtaaCTGGcttttgagtgtgactcacttt-tgctcttataaagctttta---acctctcgttc---ccattgttctgatatttcacaatgatatgccttgctatgaatgtattttcattcattgttctgagaacttaatgagcctttcagtctggaaattcatgtatttgaattcagaaaatttccttaaattatttcta----tttttttcttattca--------------------------------------ccttattctcttc---------------------------------------------------------------------tt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64725173 293 + 135191526 ctcatgcttttaatatagtaatagtgtaattttgcttagatcaatgatcaatgtttatattattcta------agtgtaaCTGGcttttgagtgtgactcacttt-tgctcttataaagctttta---agatcttgttc---ccgttgttctgatatttcacaatgatatgccttgctatgaatctattttcattcattgttctgagaacttagtgagcctttcagtctggaaattcatgtatttgaattcagaaaatttccttaaattatttcta----tttttttcttattca--------------------------------------ccttattctcttc---------------------------------------------------------------------tc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57764449 287 - 122973662 ttcatgcttttaatatagtaatagtgtaattttgcttagatcaatgatcagtgtttatattattc------------taactggcttttgagtgtgactcacttt-tgctcttataaagctttta---agatcttgttc---ccattgttctgatatttcacaatgatttgccttgctatgaatctattttcattcattgttctgagaacttagtgaggcttttggtctggaaattcatgtatttgaattcagaaaatttccttaaattatttcta----tttttttcttattca--------------------------------------ccttattctcttc---------------------------------------------------------------------tt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79698809 345 + 112192347 ctcgtggttttaatatagtaatagtgtaattttgcttagatcaatgatcaatgtttatattattctgagtatAAGTGTAACTGGcttttgagtgtgactcacttt-tgctcttacaaagctttta---agatcttgttc---ccattgttctgatatttcacaatgatatgccttgctatgaatctatttgcattcattgttctaagaacttagtgagcctttcagtctggaaattcatgtgtttgaattcagaaaatttccttaaattatttcta----ttttttt-----------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80779707 299 + 112612857 ctcgtggttttaatatagtaatagtgtaattttgcttagatcaatgatcaatgtttatattattctgagtatAAGTGTAACTGGcttttgagtgtgactcacttt-tgctcttacaaagctttta---agatcttgttc---ccattgttctgatatttcacaatgatatgccttgctatgaatctattttcattcattgttctaagaacttagtgagcctttcagtctggaaattcatgtgtttgaattcagaaaatttccttaaattatttcta----tttttttctcattca--------------------------------------ccttattctcttc---------------------------------------------------------------------tt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76828475 299 + 107442819 cTCGTGGTTTTAATATAGTAATAGTGTAATTTTGCTTAGATCAATGAtcaatgtttatattattctGAGTATAAGTGTAACTGGCTTTTGAGTGTGACTCACTTT-TGCTCTTACAAAGCTTTTA---AGATCTTGTTC---CCATTGTTCTGATATTTCACAATGATATGCCTTGCTATGAAtctattttcattcattgttCTAAGAACTTAGTGAGCCTTTCAGTCTGGAAATTCATGTGTTTGAATTCAGAAAATTTccttaaattatttcta----tttttttctcattca--------------------------------------cctTATTCTCTTC---------------------------------------------------------------------TT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81092365 298 + 108555830 ctcgtgcttttaatatagtaatagtgtaattttgcttagatcaatgatcaatgtttatattattctgagtat-AGCGTAACTGGcttttgagtgtgactcacttt-tgttcttataaagcttttg---agatcttgttc---ccattgttctgatatttcacaatgatatgccttgcaatgaatctattttcattcattgttctaagaacttagtgtgcctttcagtctggaaattcatgtatttgaattcagaaaatttccttaaattatttctc----tttttttctcattca--------------------------------------ccttgttctcttc---------------------------------------------------------------------tt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111312167 289 - 210400635 ctcatgcttttaatatagtaatagtctaattttgcttagatcaa-gatcaatgtttatattattctg------agtatAACTGGcttttgattgtgacttacttt-tggtcttagaaagctttta---agatcttgtcc---tgattgttctgatatttcacaattatatgccttgctatgaatctattttcatccattgttc-----atccattgttcctttcagtctgtaaattcatgtatttgaattcagaaaaattccttaaattatttcta--attttttttctcattca--------------------------------------ccttattctcttc---------------------------------------------------------------------tt i calJac3.chr1 C 0 C 0 s canFam3.chr1 35214324 320 - 122678785 ctcatccttttaatatagtaatagtatatttttgtttagatcaatcatcagtgtttgcattattatg----------------GGTTTTGAAtgtatgtgacttgaaacactctgaaagtgtttaatgagtttctgttctctccatagttttgatagtt--cggtgatacaccttggtgtgcatccatttttat----------gtgcatttaatgagcctttcaagctagaaactcatgtatttgagtctaggaaatttccattaattatttctttgattttttttctcattcattttctctattcttttaaaactcccattattcATGTTTTCTTATTTTCCTC---------------------------------------------------------------------TT i canFam3.chr1 I 296 I 101 a score=296222.000000 s hg38.chr9_GL383541v1_alt 6411 115 + 171286 aaatcctcataatccagacattgatcttcctagactattt-atataatgttttataaaat--aat-----gttttatattttctatataaaa---acacaaataaacatacatttata-----taactttt s panTro4.chr9 68572081 120 + 137840987 aaatcctcataatccagacattgatcttcctagactattt-atataatgttttataaaat--aatataatgttttatattttctatataaaa---acacaactaaacatacatttata-----taactttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64725466 115 + 135191526 aaatcctcataatccagacattgatcttcctagactattt------atgttttataaaat--aatgtaatgttttatattttctatataaaa---acacatataaacacacatttata-----taactttt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57764736 96 - 122973662 aaatcctcataatctagacgttgatcttcctagactgttt-atataat----------------------gttttatattttctatataaaa---acac----aaacatacatttata-----taactttt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79699154 92 + 112192347 ----------------------------cctagactgttt-atataatgttttataaaat--aat-----gttttatattttctatgtaaaa---acacaaataaacatacatttatataatataattttt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80780006 120 + 112612857 aaatcctcattatccagacattgatcttcctagactgttt-atataatgttttATAAAAT--AAT-----GTTTTATATTTTCTATGTAAAA---ACACAAATAAACATACATTTATATAATATAAttttt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76828774 120 + 107442819 AAATCCTCATTATCCAGACATTGATCTTCCTAGACtgttt-atataatgttttataaaat--aat-----gttttatattttctatgtaaaa---acacaaataaacatacatttatataatgtaattttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81092663 120 + 108555830 aaatcctcattatccagacattgatcttcctagactgttt-atgtaatgttttATAAAAT--AAT-----GTTTTATATTTTCCATATAAAA---ACACAAATAAACATACATTTATATAATAtaactttt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111312456 120 - 210400635 aaatcctcattatgcagatattggccttcctccactgtat-atataatattttataaaatacaat-----gttttatattttctatataaaa---aca--aataaatatacatttgtataatatacctttt i calJac3.chr1 C 0 C 0 s canFam3.chr1 35214745 124 - 122678785 AAACTCCCATTATTCAGATGTTGGCCTTCTTAGACTATTTGGTACAATGTTTTATGATAA--AATTTAAGCTTTTATGTTTTCCATTCaaaatatttatatataaatataaatttagg-----gcactcct i canFam3.chr1 I 101 I 117 a score=358633.000000 s hg38.chr9_GL383541v1_alt 6526 128 + 171286 ccttttatttttcttctctttgctttttgctctactttctgagaggttggttcaacctcaacttccaacttttctattgaatgtttgtgttctactatcaggtttttcttttcttttcc------------------------------------ttccttcc----t s panTro4.chr9 68572201 128 + 137840987 ccttttatttttcttctctttgctttttgctctactttctgagaggttggttcaacctcaacttccaacttttctattgaatgtttgtgttctactatcaggtttttcttttcttttcc------------------------------------ttccttcc----t i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64725581 164 + 135191526 ccttttatttttcttctctttgctttttgctctactttctgagaggttgattcaacctcaacttccaacttttctattgaatgtttgtgttctactatcaggtttttcttttcttttccttccttccttcctttcctttcctttcttcttttcttttccttcc----t i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57764832 132 - 122973662 ccttttatttttcttctctttgctttttgctctactttctgagaggttgattcaacctcaacttccaacttttctattgaatgtttgtgttc-actatcaggtttttcttttcttttcttttcc-------------------------------ttccttcc----t i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79699246 127 + 112192347 ccttttatttttcttctctttgctttttgctctactttctgagaggttgattcaacctcaacttccaacttttctattgaatgtttgtgttctaatatcaggtttttcttttcttttct------------------------------------ttcctttc----- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80780126 127 + 112612857 ccttttatttttcttctctttgctttttgctctactttctgagaggttgattcaacctcaacttccaacttttctattgaatgtttgtgttctaatatcaggtttttcttttcttttct------------------------------------ttcctttc----- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76828894 127 + 107442819 ccttttatttttcttctctttgctttttgctctactttctGAGAGGTTGATTCAACCTCAACTTCCAACTTTTCtattgaatgtttgtgttctaatatcaggtttttcttttcttttct------------------------------------ttcctttc----- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81092783 132 + 108555830 ccttttatttttcttctctttgctttttgctctactttctgagaggttgattcaaccccaacttccaacttttctattgaatgtttgtgttctactatcagatttttctttgctttgct------------------------------------tttctttcttcct i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111312576 121 - 210400635 ccttttatttttctcctgttagatttttgctctactttctgagaggctgattcaacatcaacttccaatctttctattgaatgtttgggttctactttcaggattttcttttc------------------------------------------tttctttc----- i calJac3.chr1 C 0 C 0 e canFam3.chr1 35214869 117 - 122678785 I a score=115670.000000 s hg38.chr9_GL383541v1_alt 6654 49 + 171286 ttcctttcctttcttcttttcttttccttccttcctttctctctctctc s panTro4.chr9 68572329 45 + 137840987 ttcctttcctttcttcttttcttttccttccttcct----ctctctctc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64725745 49 + 135191526 tccctttcctttcttcttttcttttccttccttcctttctctctctgtc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57764964 47 - 122973662 ttcatttcctttcttcttttcttttccttccttctttt--ctctctctc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79699373 48 + 112192347 ttcctttcctttcct-ttttgttttcCTTCCTTCCTTTCTCTGTCTCTc i rheMac3.chr15 C 0 I 26 s macFas5.chr15 80780253 48 + 112612857 ttcctttcctttcct-ttttgttttccttccttcctttctctgtctctc i macFas5.chr15 C 0 I 21 s papAnu2.chr15 76829021 48 + 107442819 ttcctttcctttcct-ttttgttttccttccttcctttctctgtctctc i papAnu2.chr15 C 0 I 33 s chlSab2.chr12 81092915 48 + 108555830 ttcctttcctttcct-ttttcttttccttccttccttcctttctctctc i chlSab2.chr12 C 0 I 2 s calJac3.chr1 111312697 40 - 210400635 ttcatttcc-------ttgtttcttcatttctttctttctctctctc-- i calJac3.chr1 C 0 C 0 s canFam3.chr1 35214986 49 - 122678785 ttctctctctcctctctctgcctctcacttcttgcaatctctctctctc i canFam3.chr1 I 117 C 0 a score=3767.000000 s hg38.chr9_GL383541v1_alt 6703 2 + 171286 tc s panTro4.chr9 68572374 2 + 137840987 tc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64725794 2 + 135191526 tc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57765011 2 - 122973662 tc i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80780322 2 + 112612857 tc i macFas5.chr15 I 21 C 0 s papAnu2.chr15 76829102 2 + 107442819 tt i papAnu2.chr15 I 33 C 0 s chlSab2.chr12 81092965 2 + 108555830 tc i chlSab2.chr12 I 2 C 0 s canFam3.chr1 35215035 2 - 122678785 tt i canFam3.chr1 C 0 I 61 e rheMac3.chr15 79699421 26 + 112192347 I e calJac3.chr1 111312737 0 - 210400635 C a score=4254.000000 s hg38.chr9_GL383541v1_alt 6705 4 + 171286 tgtc s panTro4.chr9 68572376 4 + 137840987 tgtc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64725796 4 + 135191526 tgtc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57765013 4 - 122973662 tgtc i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80780324 4 + 112612857 cctt i macFas5.chr15 C 0 I 1 s papAnu2.chr15 76829104 4 + 107442819 tctc i papAnu2.chr15 C 0 I 1 s chlSab2.chr12 81092967 4 + 108555830 tgtc i chlSab2.chr12 C 0 I 16 e canFam3.chr1 35215037 61 - 122678785 I e rheMac3.chr15 79699421 26 + 112192347 I e calJac3.chr1 111312737 0 - 210400635 C a score=102718.000000 s hg38.chr9_GL383541v1_alt 6709 54 + 171286 tctccttcctccct---tccctc------------------------ccttcctccctctctccctcccttcctcccttcc s panTro4.chr9 68572380 47 + 137840987 tctccttcctccct---tccctc------------------------ccttcctccctctctccctcccttcct------- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64725800 47 + 135191526 tctccttcctccct---tccctc------------------------ccttcctccctctctccctcccttcct------- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57765017 53 - 122973662 tctccttcctccc----tctctc------------------------ccttcctccctctctccctctcttcatcccttcc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79699447 57 + 112192347 ctcccttcctccctttctcctta------------------------ccttcctccctttctccctcccttcctcccttcc i rheMac3.chr15 I 26 C 0 s macFas5.chr15 80780329 57 + 112612857 ctcccttcctccctttctcctta------------------------ccttcctcccttcctccctcccttcctcccttcT i macFas5.chr15 I 1 C 0 s papAnu2.chr15 76829109 57 + 107442819 ctcccttcctccctttctccctc------------------------ccttcctccctttctccctcccttcctcccttcc i papAnu2.chr15 I 1 C 0 s chlSab2.chr12 81092987 81 + 108555830 cccccttcctccctttctccttctcttcctcccttcctccctcccttcctccctcccttcctccctcccttcctcccttcc i chlSab2.chr12 I 16 C 0 s calJac3.chr1 111312737 45 - 210400635 ---ccctccccaccttctttttc------------------------ttttcctttc-ctttccctcccttcc-------- i calJac3.chr1 C 0 C 0 e canFam3.chr1 35215037 61 - 122678785 I a score=481702.000000 s hg38.chr9_GL383541v1_alt 6763 193 + 171286 ttttctttatttccttctttctt--tttttttagacaggtcttactctgtcacccaggctagagtccagaggcatgatctcggctcactgcaacctccgcctcccaggctcaagcgatcctcctgcctcagcctcctgagtagctgggactacaggcacacaccactatgcccagctaatttttgtatttttggt s panTro4.chr9 68572427 192 + 137840987 -tttctttatttccttctttctt--tttttttagacaggtcttactctgtcacccaggctagagttcagaggcatgatctcggctcactgcaacctccgcctcccaggctcaagcgatcctcctgcctcagcctcctgagtagctgggactacaggcacacaccactatgcccagctaatttttgtatttttagt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64725847 191 + 135191526 -tttctttatttccttcttta-t--tttttttagacaggtcttactctgtcacccaggctagagttcagagacatgatcttggctcactgcaacctctgcctcccaggctcaagcgatcctcttgcctcagcctcctgagtagctgggactataggcacacaccgctatgcccagctaattttggtatttttagt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57765070 193 - 122973662 ttttctttatttccttctttctt--tttttttagacaggtcttactctgtcacccaggctagagttcagaggcatgatctcggctcactgcaacctccgcctcccaggctcaagcggtcctcctgcctcagcctcctgagtacctgggactacaggcacacaccactatgcccagctaatttttgtatttttagt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79699504 169 + 112192347 Gtttctttatttc---ctttctt--tttttttagacaggtcttactctgtcacccaggttagagttcagaggcatgatctcggctcactgcaacctccacctcccaggctcaagcgat-------------cctcctgagtagctgggactacaggcacacaccactatgcctga--------tgtatttttagt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80780386 169 + 112612857 Gtttctttatttc---ctttctt--tttttttagacaggtcttactctgtcacccaggttagagttcagaggcatgatctcggctcactgcaacctccacctcccaggctcaagcgat-------------cctcctgagtagctgggactacaggcacacaccactatgcctga--------tgtatttttagt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76829166 169 + 107442819 gtttctttatttc---ctttctt--tttttttagacaggtcttactctgtcacccaggttagagttcagaggcatgatctcggctcactgcaacctccacctcccaggctcaagcgat-------------cctcctgagtagctgggactacaggcacacaccactatgcctga--------tgtatttttagt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81093068 182 + 108555830 Gtttctttatttccttctttttt--tttttttagacaggtcttactctgtcacccaggttagagttcagaggcatgatctcggctcactgcaacctccacctcccaggctcaagtgatcctcctgcctcagcctcctgagtagttgggactacaggcatacaccactaaacc-----------catttctttagt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111312782 194 - 210400635 -ttcctttctttccttcttccttcatttttttagacaggtcttactctgtcacgcaggctagagttcagaggcacgatcttggctcactacaacctccacctcccaggctcaagtgatcctcctgcctcagcctcctgagtagcagggactacaggtgtacactgctatgcccagctaatttttgtgtttttagt i calJac3.chr1 C 0 C 0 s canFam3.chr1 35215098 83 - 122678785 ttttctttgctttatgctctact--ttttgggaga--------------------------------------------tcacttcacttcaacct-----------------gtaatattt---------cctattgagtgttt-----------------cagttttgct----------------------- i canFam3.chr1 I 61 C 0 a score=358717.000000 s hg38.chr9_GL383541v1_alt 6956 114 + 171286 agagatgagtttcactgtgttggccaggctggtctcaaactcctggccttaagcaatccgcctgccttggcctcccaaatgctgggattacaggtgtgagccactgtgccaggc s panTro4.chr9 68572619 114 + 137840987 agagatgagtttcactgtgttggccaggctggtctcaaactcctggccttaagcaatccgcctgccttggcctcccaaatgctgggattacaggtgtgagccactgtgccaggc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64726038 112 + 135191526 agagatgagtttcactgtgttggccaggctggtctcaaactcctggccttaagcaatccgtctgccttggcctccc--atgctgggattacaggtgtgagccactgtgccaggc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57765263 114 - 122973662 agagatgagtttcactgtgttggtcaggctggtctcaaactcctggtgttaagcaatctgcctgccttggcctcccaaatgctgggattataggtgtgagccactgtgccaggc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79699673 114 + 112192347 agagaggggtttcactatgttggccaggctggtctcaaactcctggccttaagcaatctgcctgccttggcctcccaaatgctggcattacaggtgtgaaccactgtgccaggc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80780555 114 + 112612857 agagatgggtttcactatgttggccaggctggtctcaaactcctggccttaagcaatctgcctgccttggcctcccaaatgctggcattacaggtgtgaaccactgtgccaggc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76829335 114 + 107442819 agagatgggtttcactatgttggccaggctggtctcaaactcctggccttaagcaatctgcctgccttggcctcccaaatgctggcattacaggtgtgaaccactgtgccaggc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81093250 114 + 108555830 agagatgggtttcactgtgttggccaggctggtctcaaactcctggccttaagcaatctgcctaccttggcctcccaaatgctggcattacaggtgtgaaccactgtgccaggc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111312976 114 - 210400635 agagatgggtttcactatgttggccaggctggtctcaaactcctggccttaagcagtttgcctgccttggcctccaaaatgctggaattacaggtatgagccactgtgcctggc i calJac3.chr1 C 0 C 0 e canFam3.chr1 35215181 0 - 122678785 C a score=8595.000000 s hg38.chr9_GL383541v1_alt 7070 2 + 171286 ct s panTro4.chr9 68572733 2 + 137840987 ct i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64726150 2 + 135191526 ct i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57765377 2 - 122973662 cT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79699787 2 + 112192347 ct i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80780669 2 + 112612857 ct i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76829449 2 + 107442819 ct i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81093364 2 + 108555830 ct i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111313090 2 - 210400635 ct i calJac3.chr1 C 0 C 0 s canFam3.chr1 35215181 2 - 122678785 ct i canFam3.chr1 C 0 C 0 a score=57999.000000 s hg38.chr9_GL383541v1_alt 7072 13 + 171286 caggtttttaatt s panTro4.chr9 68572735 13 + 137840987 caggtttttaatt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64726152 13 + 135191526 caggtttttaatt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57765379 13 - 122973662 CAGCTTTTTAATT i nomLeu3.chr1a C 0 I 1499 s rheMac3.chr15 79699789 13 + 112192347 caggtttttaatt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80780671 13 + 112612857 caggtttttaatt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76829451 13 + 107442819 caggtttttaatt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81093366 13 + 108555830 caggtttttaatt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111313092 13 - 210400635 caggtttctaatt i calJac3.chr1 C 0 C 0 s mm10.chr19 37966031 13 - 61431566 catgttttcaatt i mm10.chr19 N 0 C 0 s canFam3.chr1 35215183 13 - 122678785 catgtttttaatt i canFam3.chr1 C 0 C 0 a score=2136417.000000 s hg38.chr9_GL383541v1_alt 7085 595 + 171286 tctaagagctcttttatgttctctgaatgttctt---ttttaaatagcattctgacctcatccctgggattcagtgtcatagcttctctctttgaagatattaataatagttttattttgaagttttctcttcccttca------taatttccctctgagtcatt-------tttatctgtt-tgtggtttgtttgcttgatctttat-----aagttagaggcattcttcatccgtctcataa----taggtgtctgctcttgtttacttgtg------ggtgag-taaaaagctgattggaagatctgagtgagttttattggagggtgatctggctgggtcatttgttggggttaaccttaatattggtatgtgtaagtttttccttttgggctggtcaaatcccccagagatgactcttccatttt---------------------------tccaaatc------------------------accgtg-------------------gaagctcagtagatgaacaggacttagcgcaggggtcttggccttcagcgtctacatattcatttactccttctattccttctggcttcagtgtgggattcctgctcttaactcagtctttgccctcaaagtacagggtacctctgttttaccctctccagacagtaaac---atc---cttttgctagg s panTro4.chr9 68572748 600 + 137840987 tctaagagctcttttatgttctctgaatgttctt---tttaaaatagcattctgacctcatccctgggattcagtgtcatagcttctctctttgaagatattaataatagttttattttgaagttttctcttcccttca------taatttccctctgagtcatt-------tttatctgtt-tgtggtttgtttgcttgatctttatcttataagttagaggcattcttcatccgtctcataa----taggtgtctgctcttgtttacttgtg------ggtgag-taaaaagctaattggaagatctgagtgagttttattggagggtgatctggctgggtcatttgttggggtcaaccttaatattggtatgtgtaagtttttccttttgggctggtcaaatcccccagagatgactcttccatttt---------------------------tccaaatc------------------------accgtg-------------------gaagctcagtagatgaacaggacttagcgcaggggtcttggccttcagcgtctacatattcatttactccttctattccttctggcttcagtgtgggattcctgctcttaagtcagtctttgccctcaaagtacagggtatctctgttttaccctctccagatagtaaac---atc---cttttgctagg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64726165 600 + 135191526 tctaagagctcttttatgttctctgaatgttctt---ttttaaatagcattctgacctcatccctgggattcagtgtcatagcttctctctttgaagatattaataatagttttattttgaagttttctcttcccttca------taatttccctctgagtcatt-------tttatctgtt-tgtggtttgtttgcttgatctttatcttttaagttagaggtattcttcatccgtctcataa----taggtgtctgctcttgtttacttatg------ggtgag-taaaaagctgattggaagatctgagtgaattttattggagggtgatctggctgggtcatttgttggggttaaccttaatattggtatgtgtaagtttttccttttgggctggtcaaatcccccagagatgactcttccatttt---------------------------tccaaatc------------------------actgtg-------------------gaagctcagtagatgaacaggacttagagcaggggtcttcgccttcagtgtctacatattcatttattccttctattccttctggcttcagtgtgggattcctgcttttaactcagtctttgccctccaagtacagggtacctctgttttaccctctccagatagtaaac---atc---cttttgctagg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57766891 588 - 122973662 tttaagagctcttttatgttctctgaatgttctt---ttaaaaatagcattctgacctcatccctgggattcagtatcatagcttctctctttggagatattaataatacttttattttgaagttttctcttcccttca------taatttcc--ctgaatcatt-------tttatctgtt-tgtggtttgtttgcttgatctttatcttgtaagttagaggcattcttcatccctctcataa----taggtgtctgctcttgtttacttgtg------ggtgag-taaaaagctgattggaagatctgagtgagttttattggagggtgatctggctgggtcatttgttggggttaaccttaatattggtatgtgtaagt------ttttgggctggtcaaatcccttggagatgactcttccatttt---------------------------tccaaatc------------------------cctgtg-------------------aaagctgagtagatgaacaggacttagagcaggggtcttggccttcagcatctacatactcatttattccttctattccttctggcttcagtgtgggattcctgctcttaactcagtttttgccctctaatcacagggtacctctgttttaccctctcc----agtaaac---atc---cttttgctagg i nomLeu3.chr1a I 1499 C 0 s rheMac3.chr15 79699802 599 + 112192347 tctaagagctcttttatgttctctgaatgttctt---ttttaaatagcattctgacctcgtccctgggattcagtatcatagcttctctcattgaagatattaataatagttttattttgaagttttctctttccttca------taatttccctctgagtcatt-------tttatctgtt-tgtggtttgcttgcttgatctttatcttgtaagttagaggcattcttcgtctgtctcataa----caggtgtctgctcttgtttacttgtg------ggtgag-taaaaagctgattggaagatctgagtgagtgttcttggagggttatctagctgggtcatttgttggggttaaccttaatattggtatgtgtaagtttttccttttgggctggtcaaatcccccagagatgactcttccatttt---------------------------tccaaatc------------------------actgtg-------------------gaagctgagtaggtgaaca-gacttagagcaggggtcttggcctttagcgtctacatattcatttattccttctatttcttctggcttcagtgcgggattcctgctcttaactcagtctgtgccctccaagtacagggtacctctgttttaccctctccagatagtaaat---atc---cttttgctagg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80780684 599 + 112612857 tctaagagctcttttatgttctctgaatgttctt---ttttaaatagcattctgacctcgtccctgggattcagtatcatagcttctctcattgaagatattaataatagttttattttgaagttttctcttcccttca------taatttccctctgagtcatt-------tttatctgtt-tgtggtttgcttgcttgatctttatcttgtaagttagaggcattcttcgtctgtctcataa----caggtgtctgctcttgtttacttgtg------ggtgag-taaaaagctgattggaagatctgagtgagtgttcttggagggttatctagctgggtcatttgttggggttaaccttaatattggtatgtgtaagtttttccttttgggctggtcaaatcccccagagatgactcttccatttt---------------------------tccaaatc------------------------actgtg-------------------gaagctgagtaggtgaaca-gacttagagcaggggtcttggcctttagcgtctacatattcatttattccttctatttcttctggcttcagtgtgggattcctgctcttaactcagtctgtgccctccaagtacagggtacctctgttttaccctctccagatagtaaat---atc---cttttgctagg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76829464 598 + 107442819 tctaagagctCTTTTATGTTCTctgaatgttctt---ttttaaatagcattCTGACCTCGTCCCTGGGATTCAGTATCATAGCTTCTCTCATTgaagatattaataatagttttattttgaagttttctcttcccttca------tAATTTCCCTCTGAGTCATT-------TTTATCTGTT-TGTGGTTTGCTTGCTTGATCTTTATCTTGTAAGTTAGAGGCATTCTTCGTCTGTCTCATAA----CAGGTGTCTGCTC-TGTTTACTTNTG------GGTGNG-TAAAAAGCTGATTGGAAGATCTGAGTGAGTGTTCTTGGAGGGTTATCTGGCTGGGTCATTTGTTGGGGTTAACCTTAATATTGGTATGTGTAAGTTTTTCCTTTTGGGCTGGTCAAATCCCCCAGAGATGACTCTTCCATTTT---------------------------TCCAAATC------------------------ACTGTG-------------------GAAGCTGAGTAGGTGAACA-GACTTAGAGCAGGGGTCTTGGCCTTTAGCGTCtacatattcatttattccttctatttcttCTGGCTTCAGTGTGGGATTCCTGCTCTTAACTCAGTCTGTGCCCTCCAAGTACAGGGTACCTCTGTTTTACCCTCTCCAGATAGTAAAT---ATC---CTTTTGCTAGG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81093379 595 + 108555830 tctaagagctcttttatgttctctgaatgttctt---ttttaaacaacattctgaccttgtccctgggattcagtatcatagcttctctcattgaagatattaataatagttttattttgaagttttctcttcccttca------taatttccctctgagtcatt-------tttatc-----tgtggtttgcttgcttgatctttatcttgtaagttagaggcattcttcatctgtctcataa----taggtgtctgctcttgtttacttgtc------ggtgag-taaaaagctgattggaagatctgagtgagtgttattggagggtgatctggctgggtcatttgttggggttaaccttaatattggtatgtgtaagtttttccttttgggctggtcaaatcccccagagatgactcttccatttt---------------------------tccaaatc------------------------actgtg-------------------gaagctgagtaggtgaaca-gacttagagcagggatcttggccttcagcatctacatattcatttattccttctattccttctggcttcagtgtgggattcctgctctgaactcagtctgtgccctccaagtacagggtacctctgttttacccactccagataggaaat---atc---cttttgctagg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111313105 597 - 210400635 tctaagagcttttttatgttctctgaatgttatt---ttttaaacagcattctgaccttgttcctcagattcagtatc--agcttctcgctttgaagatatttataatagttttattttgaagttttctcttcccctca-tagtttaatttccctccgagtcatt-------tttctctgct-tgtggtttgtttgccttatctttatcttgtaagttagaggcattcttcatctgtatggtaatacttaggtgtctgctcttgtttacttgtg------ggtgag-taaaaagcaga-tggaagatctgagtgagttttatgggagggtgatctggctgggtgatttgttgggggtaaccttaatattggtatgtgtaagtttttccttttgggctggtcaaatctcccagagatgactcttgcatttt---------------------------tccaaatc------------------------actgtg-------------------gaagctgagcaggtaaacaggacttagagaaggggtcttggccttcggtgtctacatattcatttattc---------cctctggcttcagtgtgggattcctgctcttgactaggtctgtgtcctccaagtacagggtatctctgttatatgttctctagagagtaaat---atc---ctttggctagg i calJac3.chr1 C 0 C 0 s mm10.chr19 37966044 610 - 61431566 tctaagag-ttttttatgttctctgaatgtggct---tttgaagtaacattccaatcttgtttctgtgatttcatatcactgttcatctctttaaggacattaataataactttattttgaagttttctctgcaacaga---gtttattttccctctaaattgtttcgtttctttattttctctgtag-ttgcctggttgatctctgtccttcttgtt---tgttttcttcctctctgtcg-------tgggtgtctgatcatgtccaggtgtg------ggagaattaaaatgttgatgggaggttctgagtgagtgCCA-AGGAGAGGGGTCTGGCCGGGTCATGTGCTTTAGAGAACTT-----ACGGT---------------CTTTTGGATCCATCAGAGCCCTCAGAGATGGCTTTTCTCTCTT---------------------------TCCAGTTCTTTTGATTTTACCAGGAGAGAAAGACTCTGAATGAAACATGGAATACTAGAGGCTGAATGAGTAGACAGGACACAGAA-GCGAGTCTTACCTTCCACGGCCCTCAT---------TCCCTTCCA-------TGGATCCTGTGGTGGACACATGCGTGTAACTCAGCCTGCACCATCC-AGCCTACTGTACTTC-GTCTAGCTTTCTATGTAAAGTACATCTCATT---ATTTTGCTAGG i mm10.chr19 C 0 C 0 s canFam3.chr1 35215196 639 - 122678785 tgtaagggatcttttatgttgtctgagtgttgttctgttttaaacagtattcttaacttgtttctgggattcagaaccatggcttatctctctgaggattttaaaaattgttttattttgaagttttcttttcttttttgtagtttaattttcctccaagttgtt-------ttc-tttgtt-agtgccttatttgtttgatctttatcttgtatattaaagacattcttcagtcctctgctgatttttaggtgtctgctcatgtttaactgagcagacacatcag-taagaggccgattggaagacctgaatgagtttcattggagggtgatgtggctggcctgtatgttgggggaaactttaatatcactatgcttacatttttcctctatatctggtcagattccttggagatgacccttccattatcattctacctagagagaaaaagtttggtcataacc------------------------attctg-------------------gaagccaagttggtaaacagagcttaaaagtagggtctctgtgttcagtatttacacattcatttattt---------accctggtttcagtgtggtacattcactcttaacccagtctgtgctctttgagtccagcctacctcctttctgtcctttctagagaataagc---atccatctcttgctagg i canFam3.chr1 C 0 I 60 a score=1125399.000000 s hg38.chr9_GL383541v1_alt 7680 365 + 171286 atggggaagagaactcatgcaagagtgtggggtgttgagggaatctagaaagctggtgattctcaaacaacttttctaatcctccttattttaggccaccctcttta-ttccatttccagtgttacctggtgtcaccatttcctggagtttagattatgttagg--aaaaaaaaa----taaaactgagtcagcctagaatgtttctttgacatgttgggttagtttat-tt----acccatcttctttccggcttccagaa-------------gtcagtt--gttgtctcttctcccatttcccatattct-taaaggttcatgcatttctaaataatatatattcattgt-agttttatatgatttctggaaaagcaaaatttggatttgt s panTro4.chr9 68573348 367 + 137840987 atggggaagagaactcatgcaagagtgtggggtgttgagggactctagaaagctggtgattctcaaacaacttttctaatcctccttattttaggccgccctcttta-ttccatttccagtgttacctggtgtcaccatttcctggagtttagattatgttagg--aaaaaaaaa--attaaaactgagtcagcctagaatgtttctttgacatgttgggttagtttat-tt----acccatcttctttccagcttccagaa-------------gtcagtt--gttgtctcttctcccatttcccatattct-taaaggttcatgcatttctaaataatatatattcattgt-agttttatatgatttctggaaaagcaaaatttggatttgt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64726765 364 + 135191526 atggggaagagaactcatgcaagagtgtggggtgttgagggaatctagaaagctggtgattctcaaacaacttttctaatcctccttattttaggccaccctcttta-ttccatttccagtgttacctggtgtcaccatttcctggagtttagattatgttagg--aaaaaaaa-----taaaactgagccagcttagaatctttctttgacatgtcgggttagtttat-tt----acccatcttccttctggcttccagaa-------------gtcagtt--gttgtctcttctcccatttcccgtatcct-taaaggttcatgcatttctaaataatatatattcattgt-agttttatgtgatttctggaaaagcaaaatttggattagt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57767479 363 - 122973662 gtggggaagagaactcatccaagagtgtggggtgttgagggaatctagaaagctggtgattctcaaacaacttttctaatcctccttattttaggccaccctcttta-ttccatttccagtgttacctggtgtcaccatttcctggagtttagattatgttagg--aaaaaaa------ttaaactgagccagcttagaatctttctttgacatgtcaggttagtttat-ct----acccatcttctttttggcttccagaa-------------gtcagtt--gttgtctcttctcccatttcccatatcct-taaaggttcatgcatttctaaataatatatattcattgt-agttttatatgatttctggaaaagcaaaatttggattggt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79700401 363 + 112192347 atggggaagagaactcatccaagagtgtggggtgttgagggaatctagaaagctggtgattctcaaacaacttttctaatcctccttattttaggctaccctcttta-ttccatttccagcgttacctagtgtcaccatttcctggagttt-gatgatgttagg--aaaaaaaa-----taaaactgatccagcttagaatctttctttgacatgtcaggttagtttat-tt----acccatcatctttctggtttccagaa-------------gttcgtt--tttgtctcttcttccatttcccgtatcct-taaaggttcattcatttctaaataatatatattcattgt-agtttcctatgatttctggaaaagcaaaatttggattggt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80781283 363 + 112612857 atggggaagagaactcatccaagagtgtggggtgttgagggaatctagaaagctggtgattctcaaacaacttttctaatcctccttattttaggctaccctcttta-ttccatttccagtgttacctagtgtcaccatttcctggagttt-gatgatgttagg--aaaaaaaa-----taaaactgatccagcttagaatctttctttgacatgtcaggttagtttat-tt----acccatcatctttctggtttccagaa-------------gttcgtt--tttgtctcttcttccatttcccgtatcct-taaaggttcattcatttctaaataatatatattcattgt-agtttcctatgatttctggaaaagcaaaatttggattggt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76830062 366 + 107442819 ATGGGGAAGAGAACTCATCCAAGACTGTGGGGTGTTGAGGGAATCTAGAAAGCTGGTGATTCTCAAACAACTTTTCTAATCCTCCTTATTTTAGGCTACCCTCTTTA-TTCCATTTCCAGTGTTACCTAGTGTCACCATTTCCTGGAGTTTAGAtgatgttaggaaaaaaaaaa-----taaaactgatccAGCTTAGAATCTTTCTTTGACATGTCAGGTTAGTTTAT-TT----ACCCATCATCTTTCTGGTTTCCAGAA-------------GTTCGTT--TTTGTCTCTTCTTCCATTTCCCGTAGCCT-TAAAGGTTCattcatttctaaataatatatattcattgt-aGTTTCCTATGATTTCTGGAAAAGCAAAATTTGGATTGGT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81093974 363 + 108555830 atggggaagagaactcatccaagagtgtggggtgttgagggaatctagaaagctggtgattctcaaacaacttttctaatcctccttattttaggctaccctcttta-ttccatttccagtgttacctggtgtcaccatttcctggagtttagatgatgttagg---aaaaaaa-----taaaactgatccagcttagaatctttctttgacatgtcaggttagtttat-tt----acccatcatctttctggcttccagaa-------------gttagtt--tttgtctcttcttccatttcccatatcct-taaaggttcattcatttctaaataatatatattcattgt-agtctcctatgatttctggaaaagcaaaatttggattggt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111313702 368 - 210400635 atggggaagagaactcatccaagtatgtggggtgttgagggaatttagaaagctggtgattctcaaacaacttttctaatcctccttattttaagccaccctcttta-ttccatttccagtgttacctggtgttaccaattcctgaaatttagatgatgttagg--aaaaaaaaaaaaaaaaaactaagccagcttagaatctttctttgacctgctgggttagtttat-ttatccatccatcttctttctggcttccagaa-----------------gtt--tttgtctcttctcccactttccatatcct-gaaatgttcatgcatttct-aatactatctattcattat-agttttatatgattcctgaaaaaggaaaatttggattgat i calJac3.chr1 C 0 C 0 s mm10.chr19 37966654 366 - 61431566 GTGGGTA----GACATTACCAGGAGCAAGAAGTGAAGAAGGAATCTAGGACAGAAGTGTTTCT----CCATGGTTCTGGTCCTCCCTGATTCAAGCCATGTTCTTCACTTCCATGAATAGCTCTGTCTGATGTCTCCAGCT-CTGGATTCTTGATGATCTTTCA--ACAAAAAG-----TGAGGCAGCTTCAGGCTTGACTTTTTTTGTTGTTTACTTCATCAGTTTTTATT----GGTCAAGCTCTTTGGGGCTTCCAAGGtgtttatttgtttgtttgtttgtttgtCTTTGCTGCC---TTCCTTATTCTCTACACATTTACACATTTC-AAATAAT---TATTTATTGTGAATTTTAAATGGTT-CTGGAAAAGCAAAGTTTGGATGAAT i mm10.chr19 C 0 C 0 e canFam3.chr1 35215835 60 - 122678785 I a score=104027.000000 s hg38.chr9_GL383541v1_alt 8045 29 + 171286 g-gttcaatccaccatctttactcagaact s panTro4.chr9 68573715 29 + 137840987 g-gttcaatccaccatctttactcagaact i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64727129 29 + 135191526 g-gttcaatccaccatctttactcagaaCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57767842 29 - 122973662 g-gttcaatccaccatctttattcagaaCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79700764 29 + 112192347 g-gttcaatccaccatctttacccagaaCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80781646 29 + 112612857 g-gttcaatccaccatctttacccagaaCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76830428 29 + 107442819 G-GTTCAATCCACCATCTTTACCCAGAACT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81094337 29 + 108555830 g-attcaatccaccatctttacccagaaCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111314070 29 - 210400635 g-gttcaatccaccgtctttacccagaaCT i calJac3.chr1 C 0 C 0 s mm10.chr19 37967020 30 - 61431566 ATACTCAAGACACCATGTGcatccagaact i mm10.chr19 C 0 I 177 s canFam3.chr1 35215895 20 - 122678785 -TGTTCAACTCAC---------TCAGAACT i canFam3.chr1 I 60 C 0 a score=195503.000000 s hg38.chr9_GL383541v1_alt 8074 62 + 171286 ttaatctaaaagtctacatcaaacagaagtatcctttatgactgatgtttttaaaaagaagg s panTro4.chr9 68573744 62 + 137840987 ttaatctaaaagtctacatcaaacagaagtatcctttatgactgatgtttttaaaaagaagg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64727158 62 + 135191526 TTaatctaaaagtctacatcaaacagaagtatcctttatgactgatgtttttaaaaacaagg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57767871 56 - 122973662 TT------AAAGTCTACATCAAACAGAAGTATCCTTTATGACTGATGTTTTTaaaaacaagg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79700793 62 + 112192347 TTAATCTAAAAGTCTACATCAAACAGAAGCATCCCTTATGACTAATGTTTTcaaaaacaagc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80781675 62 + 112612857 TTAATCTAAAAGTCTACATCAAACAGAAGCATCCCTTATGACTAATGTTTTcaaaaacaagc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76830457 62 + 107442819 TTAATCTAAAAGTCTACATCAAACAGAAGCATCCCTTACGActaatgttttcaaaaacaagC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81094366 62 + 108555830 TTAATCTAAAAGTCTACATCAAACAGAAGTATCCCTTATGACTAATGTTTTcaaaaacaagc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111314099 62 - 210400635 TTAATCTAGATGTCTACATCAAACTGAAGTATCCTTTATAACTGATGTTTTCAAAAACAAGG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35215915 61 - 122678785 GTAATCCAGAAGCCTACATCCAACTTAACTAATTTTT-TGATCGATGCTTTcaaaaactggg i canFam3.chr1 C 0 C 0 e mm10.chr19 37967050 177 - 61431566 I a score=3071427.000000 s hg38.chr9_GL383541v1_alt 8136 857 + 171286 agaattgacctctcacaagtctttgctaaaaaaaaa-----gtttctaaaggatataattttaaaataaagg----aattgaaccttgaggga-aggggtggaa---tgcaagaatcagta-gACTTGGGAACCTGGCAGAGATTCCTGTGGGTGCCACCTTTGGGGGAGCTATTTTCTCTTGGAAGAATTCAGTGATATTGCTGGCCCAGTATGGAAGCTTAG-AGAGATGCAAAATGTAACCCCCCCACTGCAAGGCATTACCATGGCTAGAGTCACAGAAGTCATTGCAGTCCTATTGCCTTGTTTTGGAGTGAAGCCTACAGGTGAGGGAACAAATTTCCCCATGGAGCATCC---CCATCCCCCACCACCATGGGAGAAATTCCGAGTGCTGTGGCTTTTTAGATAGCCAGGAGTCT-ATTTGAATTTGCT---ATGGGTGGCTGAATAAATAAACCTTCCACATCCCAAAAGAGTTTTAA---AAATGTGTACGTAAAATTGTAAAATGCATAGTG-TAAAAGTAATCTTTT-CAGTTTGGGGAGGAG-TTGTAGGCACTTCCAGCTGTTCATAAAACAAGATGCTCCACTTTAAAGTT-CC-CTCT-----------CTGTTTCTTTT---------TTCAGAAGACACTTTTATTAGATACAGACAGACTTGCCCCTCAGGCTATAACCGGTGCCCAAGATAATTTCCTTTAGCCTCTAGAAAAGTAATCTTG---------------------------------------TAAGATGCCTCTTCTTAGACACCGTTCCATTTTGTTTGCTCCACCTCGAGTATTATCAAATGAAGAATTCTATTTTAATCCTAAAATTATTTTCC-CATTACTA-TTTTAATGTCCTAGTTGTTGGTATTTATAATAGTATGCATTCAATAGGTTAAATG-TTTCTTCT s panTro4.chr9 68573806 858 + 137840987 agaattgacctctcacaagtctttgctaaaaaaaaa----agtttctaaaggatataattttaaaataaagg----aattgaaccttgaggga-aggggtggaa---tgcaagaatcagta-gACTCGGGAACCTGGCAGAGATTCCTGTGGGTGCCACCTTTTGGGGAGCTATTTTCTCTTGGAAGAATTCAGTGATATTGCTGGCCCAGTATGGAAGCTTAG-AGAGATGCAAAATGTAACCCCCCCACTGCAAGGCATTACCATGGCTAGAGTCACAGAAGTCATTGCAGTCCTATTGCCTTGTTTTGGAGTGAAGCCTACAGGTGAGGGAACAAATTTCCCCATGGAGCATCC---CCATCCCCCACCACCATGGGAGAAATTCCGAGTGCTGTGGCTTTTTAGATAGCCAGGAGTCT-ATTTGAATTTGCT---ATGGGTGGCTGAATAAATAAACCTTCCACATCCCAAAAGAGTTTTAA---AAATGTGTACATAAAATTGTAAAATGGATAGTG-TAAAAGTAATCTTTT-CAGTTTGGGGAGGAG-TTGTAGGCACTTCCAGCTGTTCATAAAACAAGATGCCCCACTTTAAAGGT-CC-CTCT-----------CTGTTTCTTTT---------TTCAGAAGACACTTTTATTAGATACAGACAGACTTGCCCCTCAGGCTATAACCGGTGCCCAAGATAATTTCCTTTAGCCTCTAGAAAAATAATCTTG---------------------------------------TAAGATGCCTCTTCATAGACACCGTTCCATTTTGTTTGCTCCACCTCGAGTATTATCAAATGAAGAATTCTATTTTAATCCTAAAATTATTTTCC-CATTACTA-TTTTAATGTCCTAGTTGTTGGTATTTATAATAGTATGCATTCAATAGGTTAAATG-TTTCTTCT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64727220 861 + 135191526 agaattgacctctcacaagtctttgctaaaaaaaaaaaaaagtttctaaaggatataactttaaaataaagg----aattgaaccttgaggga-aggggtggaa---tgcaagaaTCAGTA-GACTCGGGAACCTGGCAGAGACTCCTGTGGGTGCCACCTTTGGGGGAGCTATTTTCTCTTGGAAGAATTCAGTGATATTGCTGGCCCAGTATGGAAACTTAG-AGAGATGCAAAATGTAA-CCCCCTACTGCAAGGCATTACCATGGCTAGAGTCATAGAAGTCATTGCAGTCCTATTGCCTTGTTTTGGAGTGAAGCCTACAGGTGAGGGAACAAATTTCCCCATGGAGCATCC---CCATCCCCCACCACCGTGGGAGAAATTCCGAGTGCAGTGGCTTTTTAGATAGCCAGAAGTCT-ATTTGAACGTGCT---ATGGGTGACTGAATAAATAAACCTTCCACATCCCAAAAGAGTTTTAA---AAATGTGTACATAAAATTGTAAAATGGATAGTG-TAAAAGTAATCTTTT-CAGTTTGGGGAGGAG-TTGTAGGCACTTCCAGCTGTTCATAAAACAAGATGCTCCACTTTAAAGTT-CC-CTCT-----------CTGTTTCTTTT---------TTCAGAAGACACTTTTATTAGATACAGACAGACTTGCCCCTCAGGCTATAACCAGTGCCCAAGATAATTTCCTTTAGCCTCTAGAAAAATAATCTTG---------------------------------------TAAGATGCCTCTTCATAGACACTGTTCCATTTTGTTTGCTCCACCTAGAGTATTATCAAATGAAGATTTCTATTTTAATCCTAAAATTATTTTCC-CATTACTA-TTTTAATGTCCTAGTTGTTGGTATTTATAATAGCATGCATTCAATAGGTTAAATG-TTTCTTCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57767927 860 - 122973662 agaattgacctctcacaagtctttgctaaaaaaaaaagaaagtttctaaaggatgtaattttaaaataaagg----aattgaaccttgaggga-aggggtggaa---tgcaagaatcagta-gACTCGGGAACCTGGCAGAGACTCCTGTGGGTGCCACCTTTGGGGGAGCTATTTTCTCTTGGAAGAATTCAGTGGTATTGCTGGCCCAGTATGGAAACTTAG-AGAGATGCAAAATGTAA-CCCCCCACTGCAAGGCATTACCATGGCTAGAGTCACAGAAGTCATTGCAGTCCTATTGCTTTGTTTTGGAGTGAAGCCTACAGGTGAGAGAACAAATTTCCCCATGGAGCATCC---CCATCCCCCACCACCATGGGAGAAATTCTGAGTGCCGTGGCTTTTTAGATAGCCAGAAGTCT-ATTTGAACTTGCT---ATGGGTGACTGAATAAATAAACCTTCCACATCCCAAAAGAGTTTTAA---AAATGTGTACATAAAATTGTAAAATGGATAATG-TAAAAGTAATCTTTC-CAGTTTGGGAAGGAG-TTGTAGGCACTTCCAGCTGTTCA-AAAATAAGATGCTCCACTTTAAAGTT-CC-CTCT-----------CTGTTTCTTTT---------TTCAGAAGACACTTTTATTAGATACAGACAGACTTGCCCCTCAGGCTATATCCAGTGCCCAAGATAATTTCCTTTAGCCTCTGGAAAAATAATCTTG---------------------------------------TAAGATGCCTCTTCATAGATACCATTCCATTTTGTTTGCTCCACCTTGAGTATTATCAAATGAAGATTTCTATTTTAATCCTAAAATTATTTTCC-CATTACTA-TTTTAATGTCCTAGTTGTTGGTATTTATAATAGTATGCATTCAATAGTTTAAATG-TTTCTTCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79700855 893 + 112192347 agaattgacctctcacaagtctttgctaaaaagaaa----tgtttctaaaggatgtaattttaaaataaagg----aactgaaccttgaggga-aggggtagaa---tgcaagaatcaata-gACTTGGGAACCTGGCAGAGACTCCTGTGGGTGCCACCTTTTGGGGAGCTATTTTCTCTTGGAAGAATTCAGTGATATTGCTGGCCCAGTATGGAAACTTAG-AGAAATGCAGAATGTAA-TCCCCTACTGCAAGACATTACCATGGCTAGAGTCACAGAAGCCATTGCAGTCCTATTGCCTTGTTTTGGAGTGAAGCCTACAGGTGAGGGAACAAATTTCCCCATGGAGCATCC---CCATCCCCCACCACCATGGGAGAAATTCTGAGTGCAGTGGCTTTTTAAATAGCCAGAAGTCTCATTTGAACTTGCT---ATGGGTGACTGAATAAATAAATCTTCCACGTCCCAAAAGAGTTTTTA---AAATGTGTATGTAAAATTGGAAAATGGATAATG-TAAAAGTAATCTTTT-CAATTTGGGGAGGAG-TTGAAGGCACTTCCAGCTGTTCATAAAACAAGATGCTCCACTTTAAAGTT-CC----------------CTGTTTCTTTT---------TTCAGAAGACACTTTTATTAGATACAGACAGATTTGCCCCTCAGGCTATAAGCAGCGCCCAAGATAATTTCCTTTAGCCTCTAGAAATATAATCTTGTAAGATGCCTCTTCATAGATACCGTTCCATATAATCTTGTAAGATGCCTCTTCATAGGTACCGTTCCATTTTATTTGTTCCACCTCAAATATTACCAAATGAAGATTTCTATTTTAATCCGAAAATTATTTTCC-CATTACTA-TTTTAATGTCCTAGTTGTTGGTATTTATAATAGCATACATTCCGTAGGTTAAATG-TTTCTTCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80781737 854 + 112612857 agaattgacctctcacaagtctttgctaaaaagaaa----tgtttctaaaggatgtaattttaaaataaagg----aactgaaccttgaggga-aggggtagaa---tgcaagaatcaata-gACTTGGGAACCTGGCAGAGACTCCTGTGGGTGCCACCTTTTGGGGAGCTATTTTCTCTTGGAAGAATTCAGTGATATTGCTGGCCCAGTATGGAAACTTAG-AGAAATGCAGAATGTAA-TCCCCTACTGCAAGACATTACCATGGCTAGAGTCACAGAAGCCATTGCAGTCCTATTGCCTTGTTTTGGAGTGAAGCCTACAGGTGAGGGAACAAATTTCCCCATGGAGCATCC---CCATCCCCCACCACCATGGGAGAAATTCTGAGTGCAGTGGCTTTTTAAATAGCCAGAAGTCTCATTTGAACTTGCT---ATGGGTGACTGAATAAATAAATCTTCCACGTCCCAAAAGAGTTTTTA---AAATGTGTATGTAAAATTGGAAAATGGATAATG-TAAAAGTAATCTTTT-CAATTTGGGGAGGAG-TTGAAGGCACTTCCAGCTGTTCATAAAACAAGATGCTCCACTTTAAAGTT-CC----------------CTGTTTCTTTT---------TTCAGAAGACACTTTTATTAGATACAGACAGATTTGCCCCTCAGGCTATAAGCAGCGCCCAAGATAATTTCCTTTAGCCTCTAGAAATATAATCTTG---------------------------------------TAAGATGCCTCTTCATAGGTACCGTTCCATTTTATTTGTTCCACCTCAAATATTACCAAATGAAGATTTCTATTTTAATCCGAAAATTATTTTCC-CATTACTA-TTTTAATGTCCTAGTTGTTGGTATTTATAATAGCATACATTCCGTAGGTTAAATG-TTTCTTCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76830519 854 + 107442819 AGAATTGACCTCTCACAAGTCTttgctaaaaagaaa----tgtttccaaaggatgtaattttaaaataaagg----aattgaACCTTGAGGGA-AGGGGTAGAA---TGCAAGAATCAATA-GACTTGGGAACCTGGCAGAGACTCCTGTGGGTGCCACCTTTTGGGGAGCTATTTTCTCTTGGAAGAATTCAGTCATATTGCTGGCCCAGTATGGAAACTTAG-AGAAGTGCAGAATGTAA-TCCCCTACTGCAAGACGTTACCATGGCTAGAGTCACAGAAGCCATTGCAGTCCTATTGCCTTGTTTTGGAGTGAAGCCTACAGGTGAGGGAACAAATTTCCCCATGGAGcatcc---ccatcccccaccaccaTGGGAGAAAttctgagtgcagtggctttttAAATAGCCAGAAGTCTCATTTGAACTTGCT---ATGggtgactgaataaataaacctTCCACGTCccaaaagagttttta---aaatgtgtacgtAAAATTGGAAAATGGATAATG-TAAAAGTAATCTTTT-CAATTTGGGGAGGAG-TTGAAGGCAATTCCAGCTCTTCATAAAACAAGATGCTCCACTTTAAagtt-cc----------------ctgtttctttt---------ttcagaagaCACTTTTATTAGATACAGACAGATTTGCCCCTCAGGCTATAAGCAGCGCCCAAGATAATTTCCTTTAGCCTCTAGAAATATAATCTTG---------------------------------------TAAGATGCCTCTTCATAGATACCGTTCCATTTTATTTGTTCCACCTCAAATATTACCAAATGAAGATTTCTATTTTAAtcctaaaattattttcc-cattacTA-TTTTAATGTCCTAGTTGTTGGTATTTATAATAGCATACATTCCGTAGGTTAAATG-TTTCTTCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81094428 851 + 108555830 agaattgacctctcacaagtctttgctaaaaagaaa----tgtttctaaaggatgtaattttaaaataaacg----aattgaaccttgaggga-aggggtagaa---tgcaagaatcaata-gactcaggaacctggcagaga--cctgtgggtGCCATCTTTTGGGGAGCCATTTTCTCTTGGAAGAATTCAGTGATATTGCTGGCCCAGTATGGAAACTTAG-AGACATGCAGAATGTAA-TCCCCCACTGCAAGACATTACCATGGCTAGAGTCACAGAAGCCATTGCAGTCCTATTGCCTTGTTTTGGAGTGAAGCCTACAGGTGAGGGAACAAATTTCCACATGGAGCATCC---CCAT-CCCCACCAACATGGGAGAAATTCTGAGTGCAGTGGCTTTTTAAATAGCCAGAAGTCTCATTTGAGCTTGCT---ATGGGTGACTGAATAAATAAACCTTCCACATCCCAAAAGAGTTTTTA---AAATGTGTATGTAAAATTGGAAAATGGATAATG-TAAAAGTAATCTTTT-CAATTTGGGGAGGAG-TTGAAGGCACTTCCAGCTGTTCATAAAACAAGATGCTCCACTTTAAAGTT-CC----------------CTGTTTCTTTT---------TTCAGAAGACACTTTTATTAGATACAGACAGATTTGCCCCTCAGGCTAAAACCAGCACCCAAGATAATTTCCTTTAGCCTCTAGAAATATAATCTTG---------------------------------------TAAGATGCCTCTTCATAGATACCGTTCCATTTTGTTTGCTCTACCTCAAATATTACCAAATGAAGATTTCTATTTTAATCCTGAAATTATTTTCC-CATTATTG-TTTTAATGTCCTAGTTGTTGGTATTTATAATAGCATACATTCCGTAGGTTAAATG-TTTCTTTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111314161 854 - 210400635 GGAATTGACCTGTCACAAGTCTTTGCTAAAAAAACA-AAAAGTTTCTAAAGGATGTAATTTTAAAATAAAGG----AATTGAACCTTGAGGGA-AGGGGTAGAA---TATAAGAATAAATA-GACTCGGGAACCTGGCAGAGACTCCTGTAGGTACCACCTCTAGGGGAGCTGTTTTCTCTTAGAATAATTCAGTGATATTGCTGGCCCAGTATGGAAACTTAG-A----TGAAGAATGTAA-CCCCTCACTGCAAGG-ATTACCATGGCTAGAGTCACAGAAGCCATTGTAGTCCTCTTGCCTTGTTTTAGAGTGAAGCCTACAGGTGAGAGAATCCGTTTCCCCATGTAGCATCC---CCATGCCCCACCA---TGGGAGAAATTCTGAGTGCAGTGGCTTTTTAGATAGCCAGATGTCTCCTTCAAACCTGCT---ATGGGTGACTGAATAAATCAATCTTCCACATCACAAGAGAATTTTTA---AAATGTATGCATAAAATTGTAAAATGGATAACG-TAAAAGTAATCTTTT-TGGTTTGGGGAGGAG-TTATAGGCACTTTCAGCTGTTTATAAAATAAGATGTTCCATTTGAAAGTT-CC-CTCT-----------CTGTTTCTTTT---------TTCAGAAGACACTTTTATTAGATACAGACAGACTTGCCCCTTGGGCTATAACCAACTCCCAAGACAATTTCCTTTAGCCTCTAGAAATATAATCTTG---------------------------------------TAAGATGCCTCTTCATAGATACCATTCCATTTTGTTTGCTCCTCCTTAAGTATTATCAAATGAATATTTCTATTTTAATCCTAAAATTATTTTCA-CATTACAA-TTTTAATGTCCTAGTTTTTGGTATTTATAATAGGATGCATTCAGTAGTTTAAGTGTTTTTTTCT i calJac3.chr1 C 0 C 0 s mm10.chr19 37967227 793 - 61431566 agaaccacccctacaTAGCTCTTTGCTGAAAG--------AGTTACTAAAGGATGTGTTTCTAAGATGTAAGGAAAAAATGATCCTTGGAGGA-AGAAGTGTAACAGCAAAAGTATCAGTA-GGTACAGGAGCCTGGTGAA--------TGAGTGGCACCTCCAGTGGAGGACTCTCCTTCTGAAAGATGCTGGTGCTA-------CTCAGTAGGAAAACATCG----GATGCAGAAGGCAG---CCATGATAAAAGGCATCAGTACAGCT--------AGAAGCCATTCCAGACCTATTGCCTTGCTCTTCACTGAACCTTACAGGTGAG-GAGCCAGTATCCCTAGGAAGCATATGAATCATTCTAAATCATTAAGA--------------------------TAAATATTCAGATATCT-AATTTAACTTGTT---GCAATTGACCAAATAAATGCAATTTCCATACAGCAGCATAA-------------GTATGTATAAAATTGTTAAGTGGGTAATT-TAAAACTCAACTTTTGGAGTCTAGGGAGGAATTTATAGGGGCTTTTAGTTGTTTAAAAAGCAAGATAGATCACTTAATAATTGCC-CTCC-----------CTTCTTCTTCTTTGTTTGCATTCTCAATTCA-TTTTATTGGCCATG------------CCTTGAGCTGTAATGCAAGCTCAAGGTAATTTCCTGTGGCTCCTAGAAATATAACTTTA---------------------------------------TAAAATACAGATTCATAAATGGGATCCCATTTTGCTTGAAACACCCCA--TGCCATCAAGAAAAGATTTTCATTTTAATCCTAGAGCCATTTTCCACATGACTGTTTTTACCGTCCTAGTTGTTGGTTTTTAAAATAGCATCCATTTGATAGTTGAGACC-ATTC---- i mm10.chr19 I 177 I 28 s canFam3.chr1 35215976 860 - 122678785 agaattgacctcttctagatcttagctgacaaaaag----------------atatatttcaaaaagaagga----aattgaacgttgaaggacaaaagtggaa---tgcaagaattaatagGACTCAGGAACCTGCTGAGTACCCAGTCAGATGCCACCAGTAGGGATGCTATTCCCTTCTGGAGGGATGTGGCGATGTCTTTGACCCAGTATAGAAACCTAGCAGAGACACAGAAGGCAG--CCCCCACCGTAAGACATTTCCACACCTAGAGTGGAAGAAGTCATTTCATTCCTATTGCCTGATTTTGGAAAGAAGCCTAGAAGTAAGAGAACCAGTTTCT-CATGGAACATCC---CCATCCCAC-CAAATAAGAGAAAATTTCTAAGTCCAATGAGT---TGGATATTCAGAAGTCTAATTTGAGCCTGCTTCCCCATATGAGTGAATAAACAAAGCTTCCCTATAACAAAATAAATATAGAATAAATGTGTATATGAAGTTGTAAAATGTGTAATGAGAAAAGCAACCTTTT-CAGTTT-GGGAGGGG-TTTTGGG-GCTTTCAGCAGTTTG-GAAACAAGATGTCTCATTTAAAAGTT-TCTCTCTGGGTTTTGGTGTTGTTTTTTTT---------TCCAGAAGACATTTTTATTGGACACAGACAAACCTGCCCTTCGGGCTATAACCAGGGACCAAGATAATTTCCTTTAGCCTTTAAAGACATAATCCTG---------------------------------------TAAGAAGTCTCTTCATATCTTCTACTCCATCTTGTTTGCTCCACCTCAAGTATCCTCAAATGAAGG-TTCTATTTTAATCCTGAGACTATTTTCTACATTACTATTTTTAATGTCTTTGTTGTTGGTACTTACAATGGCATCCACTCAATAGTTTAGATT-TTTCTTCT i canFam3.chr1 C 0 I 30 a score=502629.000000 s hg38.chr9_GL383541v1_alt 8993 173 + 171286 GGATgggtgtggtggctcatgcctgtaatcccagcacattgggaggccgaggtaggcagaccacttgaggtcaggagtttgagaccagccttgccaacctggtgaaaccctgtctgtact-aaaaatacaaaaattagccaggcaaggtggtgtgtgcctgtaattccagctac- s panTro4.chr9 68574664 173 + 137840987 GGATgggtgtggtggctcatgcctgtaatcccagcacattgggaggccgaggtaggcagaccacttgaggtcaggagtctgagaccagccttgccaacctggtgaaaccctgtctgtact-aaaaatacaaaaattagccaggcaaggtggtgtgtgcctgtaattccagctac- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64728081 173 + 135191526 GGATgggtgtggtggctcatgcctgtaatcccagcacattgggaggccgaggtaggcagaccacttgaggtcaggagtttgagaccagcctcgctaacatagtgaaaccctgtctgtact-aaaaatacaaaaattagccaggcatggtggtgtgtgcctttaattccagctac- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57768787 173 - 122973662 GGATgggtatggtggctcatgcctgtaatcccagcacattgggaggccgaggtaggcagatcacttgaggtcaggggtttgagaccagccttgccaacatggtgaaaccctgcctctact-aaaaatacaaaaattagccaggcatggtggcgtgtgcctgtaattccagctac- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79701748 173 + 112192347 GGATgggtgtggtggctcatgcctgtaagcccagcagattgggaggccaaggtaggcagatcacttgaggccaggagtttgagaccagccttgtcaacatggtgaaaccctgtctctact-aaaaatacaaaaattagttgggcatggtggcgtgtgcctgtaattccagctac- i rheMac3.chr15 C 0 I 20 s macFas5.chr15 80782591 173 + 112612857 GGATgggtgtggtggctcatgcctgtaatcccagcatattgggaggccaaggtaggcagatcacttgaggccaggagttcgagaccagccttgtcaacatggtgaaaccctgtctctact-aaaaatacaaaaattagttgggcatggtggcgtgtgcctgtaattccagctac- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76831373 173 + 107442819 GGataggtgtggtagctcatgcctgtaatcccagcatattgggaggccaaggtaggcagatcacttgaggccaggagttcgagaccagccttgtcaacatggtgaaaccctgcctctact-aaaaatacaaaaattagttgggcatggtggcgtgtgcctgtaattccagctac- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81095279 171 + 108555830 GGATgggtgtggtggctcatgcctgtaatcccagcatattgggaggccaagggaggcagatcacttgaggccaggagttcgagaccagcctggccaacatggtgaaaccctg--tctact-aaaaatacaaaaattagccgggcatggtggcgtgtgcctgtaattccagctac- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111315015 172 - 210400635 ggccagttgcagtggctcacacctgtaatcccagcactttgggaggccgaggcaggcagatcactt---gtcaggagttcaagaccagcctgtccaacgtggtgaaggcctgtctctactaaaaaatacaaaaattagccaggcatgatggcatgtgcctgtaatcccagctatt i calJac3.chr1 C 0 C 0 e mm10.chr19 37968020 28 - 61431566 I e canFam3.chr1 35216836 30 - 122678785 I a score=11124.000000 s hg38.chr9_GL383541v1_alt 9166 6 + 171286 tcgggg s panTro4.chr9 68574837 6 + 137840987 tcgggg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64728254 6 + 135191526 tcgggg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57768960 6 - 122973662 tcgggg i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80782764 5 + 112612857 -ctgta i macFas5.chr15 C 0 I 15 s papAnu2.chr15 76831546 6 + 107442819 tcggga i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81095450 6 + 108555830 tcgggg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111315187 6 - 210400635 tcgggg i calJac3.chr1 C 0 C 0 e mm10.chr19 37968020 28 - 61431566 I e canFam3.chr1 35216836 30 - 122678785 I e rheMac3.chr15 79701921 20 + 112192347 I a score=403648.000000 s hg38.chr9_GL383541v1_alt 9172 156 + 171286 ggctgaggcacgagaatcgctt---gaaccagggaagtggaggttgcagtgagctgggattgcaccactgcactccagcctggatcacagagcgaga--ctgtctccaagtaaata--------aaTGAATGAATGAATGAATGTTTCTTCTAATCTGATAGAACACCA s panTro4.chr9 68574843 160 + 137840987 ggctgaggcacgagaatcgctt---gaaccagggaagtggaggttgcagtgagctgggattgcaccactgcactccagcctggatcacagagcgaga--ctgtctcCAAGTAaata----aatgaatgaatgaatgaatgaatgTTTCTTCTATTCTGATAGAACACCA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64728260 156 + 135191526 ggctgaggcaggagaattgctt---gaaccagggaagtggaggttgcagtgagctgagattgcaccactgcactccagcctggatcacagagcgaga--ctgtctcTAAGTAaatg--------aatgaatgaatgaatgaatgTTTCTTCTATTCTGATAGAACATCA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57768966 169 - 122973662 ggctgaggcatgagaatcgcttcccactccagggaagtggaggttgcagtgagctgagattgcaccactgcactccagcccggatcacagagccagactctgtctcCAAGTAaatgaatgaatgaatgaatgaatgaatgaatgTTTCTTCTATTCTGATAGAACATCA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79701941 152 + 112192347 ggctaaggcacgagaatcgctt---gaaccaggaaagtggaggttgcagtgagctgagattgcaccactacactccagcctagatcacagagcaagactctgtctcCAaatgaatg--------a----atgaatgaatgaatgTTTCTTCT--TCTGATAGAACATCA i rheMac3.chr15 I 20 C 0 s macFas5.chr15 80782784 152 + 112612857 ggctaaggcacgagaatcgctt---gaaccaggaaagtggaggttgcagtgagccgagattgcaccactacactccagcctagatcacagagcaagactctgtctccaaatgaatg--------a----atgaatgaatgaatgTTTCTTCT--TCTGATAGAACATCA i macFas5.chr15 I 15 C 0 s papAnu2.chr15 76831552 156 + 107442819 ggctaaggcacgagaatcgctt---gaaccaggaaagtggaggttgcagtgagccgagattgcaccactacactccagcctagatcacagagcaagactctgtctccaaatgaatg--------aatgcatgaatgaatgaatgtttcttCT--TCTGATAGAACATCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81095456 148 + 108555830 ggctgaggcacgagaaccgctt---gaaccaggaaagtggaggttgcagtgagccaagattgcaccactgcactccagcctggatcacagagcaagactctgtctccaaaaga----------------aTGAATGAATGAATATTTCTTCT--TCTGATAGAACATCA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111315193 148 - 210400635 ggctgaggcatgagaatcactt---gaaccagggaagtggaggttgcaatgaaccaagattgcacccttgcactccagcctggatgacagagtcaaactccatctc------------------aaTCAGTGTATCAGTCAATGTTTCTTCTATTCTGATAGAACATCA i calJac3.chr1 C 0 C 0 e mm10.chr19 37968020 28 - 61431566 I e canFam3.chr1 35216836 30 - 122678785 I a score=21177.000000 s hg38.chr9_GL383541v1_alt 9328 6 + 171286 ATGCTA s panTro4.chr9 68575003 6 + 137840987 ATGCTA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64728416 6 + 135191526 ATGCTA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57769135 6 - 122973662 ATGCTA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79702093 6 + 112192347 ATGCTA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80782936 6 + 112612857 ATGCTA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76831708 6 + 107442819 ATGCTA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81095604 6 + 108555830 ATGCta i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111315341 6 - 210400635 ATGCTA i calJac3.chr1 C 0 C 0 s mm10.chr19 37968048 6 - 61431566 AGATTA i mm10.chr19 I 28 C 0 e canFam3.chr1 35216836 30 - 122678785 I a score=643732.000000 s hg38.chr9_GL383541v1_alt 9334 163 + 171286 CTAATTGTCCAATTTT--------CATTTCTAGTTTCTGTGCCTCCCACCCT---GAGGCAGGACACTA--TAGAAAAGGCTAttttggtggatagactgtgt-atcaatttcaactacaagcctggacctgtgaaaaaCTTGAGTTGTTAGAAAATtaataataaatatttatata s panTro4.chr9 68575009 165 + 137840987 CTAATTGTCCAATTTT--------CATTTCTAGTTTCTGTGCCTCCCACCCTA-AGAGGCAGGACACTA--TAGAAAAGGCTATTTTGGTGGATAGACTGTGT-ATCAATTTCAACTACAAGCCTGGACCTGTGAAAAACTTGAGTTGTTAGAAAATtaataataaatatttatata i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64728422 166 + 135191526 CTAGTTGTCCAATTTT--------CATTTCTAGTTTCTGTGCCTCCCACCCTA-AGAGGCAGGACACTA--TAGAAAAGGCTATTTTGATGAATAGACTGTGTCATCAATTTCAACTACAAGCCTGGACCTGTGAAAAACTTGAGTTGTTAGAAAATtaataataaatatttatata i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57769141 166 - 122973662 CTAATTGTCCAATTTT--------CATTTCTAGTTTCTGTGCCTCCCACCCTA-AGAGGCAGGACACTA--TAGAAAAGGCTATTTTGATGGATAGACTGTGTCATCAATTTCAACTACAAGCCTGGACCTGTGAAAAACTTGAGTTGTTAGAAAATtaataataaatatttatcta i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79702099 168 + 112192347 CTAATTGTCCAATTTT--------CATTTCTAGCTTCTGTGCCTCCCACCCTA-AGAGGCAGGACACTATTTTTAAAAGGCTATTTTGATGGATAGACTATGTCACCAATTTCAACTACAAGCCTGGACCTGTGAAAAACTTGAGTTGTTAGAAAATtaataataaatatttatata i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80782942 168 + 112612857 CTAATTGTCCAATTTT--------CATTTCTAGCTTCTGTGCCTCCCACCCTA-AGAGGCAGGACACTATTTTTAAAAGGCTAttttgatggatagactatgtcaccaatttcaactacaagcctggacctgtgaaaaaCTTGAGTTGTTAGAAAATtaataataaatatttatata i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76831714 168 + 107442819 CTAATTGTCCAATTTT--------CATTTCTAGCTTCTGTGCCTCCCACCCTA-AGAGGCAGgacactatttttaaaaggctattttGATGGATAGACTATGTCACCAATTTCAACTACAAGCCTGGACCTGTGAAAAACTTGAGTTgttagaaaattaataataaatatttatata i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81095610 168 + 108555830 ctaattgtccaatttt--------catttctagcttctgtgcctcccacccta-agaggcaggacactatttaaaaaaggctattttgatggatagactatgtcaccaatttcaactacaagcctggacctgtgaaaaaCTTGAGTTGTTAGAAAATtaataataaatattgatata i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111315347 159 - 210400635 CTAATTGTCCAATTTT--------CATTCCTAGTTTCTGTGCCTTCCACCCTA-AGAGGCAGGACACTA--TAGAAAAGCCTATTTTGATGGACAGACTATGTCATCAATTTCAACTACAAGCCTGGACCTGTGAAAAACTTGACTGGTTAGAAAATT-------AATATTTGTATA i calJac3.chr1 C 0 C 0 s mm10.chr19 37968054 172 - 61431566 TTAATTGTCCAATTTGCACACATACATTTTTAATTTCTATGGCCGCCATCCCA-A-AAGCAGGATCCCA--TATATAAGCCTATTTTGATGGGTAGATTGTCTCATAAATTTCAAGTATTAGCCTGGACCCATGAAAAGCTTGTGCTGTTAGAAAG-CAATAGCAAATGTCTGTACA i mm10.chr19 C 0 C 0 s canFam3.chr1 35216866 164 - 122678785 CTGATTGTCCAATTAA--------CATTTCTAGTTTC--TGCCTCCCACCCTGCAAAGGCAGGACAGTG--TATGAAAGGCTATTTTGATGCATAGACTCCATAATCAGTCTCAACTACAAGCCT-GACCTGAGAAAAATTTGAGTTGATAGAAAATGAATATTAAAgaagaatgta i canFam3.chr1 I 30 I 288 a score=730539.000000 s hg38.chr9_GL383541v1_alt 9497 222 + 171286 gtacttg----gcatgccagacac--------tcttttgagcactctaacaatataaactcaattagtactcatgatctccatgtgaggtagtgactattatgatttccatcttacag-atgaggaaactgaggcacagagagaccaaataacgtgccctaggttcatagatagcaagtggcagagctacaagttgaacccaggtggtcttgctccagtggccatggtctcaatg s panTro4.chr9 68575174 222 + 137840987 gtacttg----gcatgccagacac--------tcttttgagcactctaacaatataaactcaattagtactcatgatctccatgtgaggtagtgactattatgatttccatcttacag-atgaggaaactgaggcacagagagaccaaataacgtgccctaggttcatagatagcaagtggcagagctacaagttgaacccaggtggtcttgctccagtggccatggtctcaatg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64728588 222 + 135191526 gtacttg----gcatgccagacac--------tcttttgagcactctaacaatataaactcaattagtactcatgatctccatgtgaggtagttactattatgatttccatcttacag-atgaggaaactgaggcacagagagaccaaacaatgtgccctaggttcatagatagcaagtggcagagctacaagttgaacccgggtggtcttgctccagtggccgtggtctcaatg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57769307 222 - 122973662 gtacttg----gcatgccagacac--------tcttttgagcactctagcaatataaactcaattagtactcatgatctccatgtgaggtaggtactattatgatttccatcttacag-atgaggaaactgaggcacagagagaccaaataacgtgccctgggttcatagacagcaagtggcagagctacaagttgaacccaggtggtcttgctccagtggccgtggtctcaatg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79702267 219 + 112192347 gtacttg----gcatgccagatac--------tcttttgagcactctaacaatataaactcaattagtactcatgatctccatgtaaggtaggcattgttatgatttccttcttacag-atgaggaaactgaggcacagagagaccaaataatgtgccctaggttcatagatagtaagtaacagagctacaagttgaacccaggtggtcttgctccagtggccgtggtctca--- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80783110 219 + 112612857 gtacttg----gcatgccagatac--------tcttttgagcactctaacaatataaactcaattagtactcatgatctccatgtaaggtaggcattgttatgatttccttcttacag-atgaggaaactgaggcacagagagaccaaataatgtgccctaggttcatagatagtaagtaacagagctacaagttgaacccaggtggtcttgctccagtggccgtggtctca--- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76831882 219 + 107442819 gtacTTG----GCATGCCAGATAC--------TCTTTTGAGCACTCTAACAATATAAACTCAATTAGTACTCATGATCTCCATGTAAGGTAGGCATTGTTATGATTTccttcttacag-atgaggaaactgaggcacagagagaccaAATAATGTGCCCTAGGTTCATAGATAGTAAGTAACAGAGCTACAAGTTGAACCCAGGTGGTCTTGCTCCAGTGGCCGTGGTCTCA--- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81095778 219 + 108555830 gtacttg----gcatgccagatac--------tcttttaagcactctaacaatataaactcaattagtactcatgatctccatgtaaggtaggcattgttatgatttccttcttacag-atgaggaaactgaggcacagagagaccaaataatgtgccctaggttcatagatagtaagtgacagagctacaagttgaacccaggtggtcttgctccagtggccatggtctca--- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111315506 222 - 210400635 GTACGTG----GCAtgccaagcac--------tcttttgaacactctaacaatataaactcatttagtactcataatctctgtgcgaggtaggtactattatgatttctatcttacag-atgaggaaaccgaggcccagagagaccaaataatgtgccctaggttcatagatactaagtggcagaactacaatttgaacccaagtggtcttgttccagaggccatggtctcaatg i calJac3.chr1 C 0 C 0 s mm10.chr19 37968226 214 - 61431566 GTACCTGAACAGTATGCCAAGCACATGAACAGCAGTTGAAGCACTTGGACGATGCAATTCAGACAAGTATtcatgactaccctgcaaagt-ggcagtgttactatttccatttttaagtgtgaggaaagcaaggcacccagggaccagggaatgtgttctaggttcacaggcagtaagtgaca-agctataagttgaacccaatccacctggctcc------------------- i mm10.chr19 C 0 C 0 e canFam3.chr1 35217030 288 - 122678785 I a score=325538.000000 s hg38.chr9_GL383541v1_alt 9719 127 + 171286 acAAAATCATGCTCCCATTCCTGGTATAACACTTTCTCACTCTCTTTAAACAGC--TTTTTTTTCCTTCTGTTAATAGTAACAGTATTTAATTTTGTTGATGATGAAAGGATTAAGGcagtgtgttctt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- s panTro4.chr9 68575396 127 + 137840987 acAAAATCATGCTCCCATTCCTGGTATAACACTTTCTCACTCTCTTTAAACAGC--TTTTTTTTCCTTCTGTTAATAGTAACAGTATTTAATTTTGTTGATGATGAAAGGATTAAGGcagtgtgttctt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64728810 128 + 135191526 acAAAATCATGCTCCCATTCCTGGTATAACACTTTCTCACTCTCTTTAAACAGC-TTTTTTTTTCCTTCTGTTAATAGTAATAGTATTTAATTTTGTTGATGATGAAAGGATTAAAGcagtgtgttctt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57769529 129 - 122973662 acAAAATGATGCTCCCATTCCTGGTATAACACTTTCTCACTCTCTTTAAACAGCTTTTTTTTTTCCTTCTGTTAATAGTAATAGTATTTAATTTTGTTGATGATGAAAGGATTAAGGcagtgtgttctt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79702486 111 + 112192347 --------aTGCTCTCACTCTTGGTATAACACTTTCTCACTCTCTTTAAACAGC---TTTTTTTCCTTCTGTTAATAGTA-------TTAATTTCGCTGATGATGAAAGGATTAAGGCACTGTGTTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80783329 111 + 112612857 --------aTGCTCTCACTCTTGGTATAACACTTTCTCACTCTCTTTAAACAGC---TTTTTTTCCTTCTGTTAATAGTA-------TTAATTTCGCTGATGATGAAAGGATTAAGGCACTGTGTTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76832101 111 + 107442819 --------ATGCTCGCACTCTTGGTATAACACTTTCTCACTCTCTTTAAAcagc---tttttttccttctgttaataata-------ttaattttgctGATGATGAAAGGATTAAGGCAGTGTGTTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81095997 111 + 108555830 --------aTGCTCCCACTCTTGGTATAAGACTTTCTCACTCTCTTTAAACAGC---TTTTTTTCCTTCTGTTAATAGTA-------TTAATTTTGCTGATGATGAAAGGATTAAGGCAGTGTGTTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111315728 125 - 210400635 acAAAATCATGCCCCCACTCCTGGTATAACACCGTCTCACTCTCTTTAAACAGC-TTTTTTTTTTCTTCTGTTAATAGTGATAGTACTTAATTTTGT---TGATGAAAGCGTTAAGGcagtgtgttctt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- i calJac3.chr1 C 0 C 0 s mm10.chr19 37968440 118 - 61431566 ------TTCTGCTCCTACTTCTA----AATAAATGGTCCGGCTTGTTAAGTGGCCTTTTATTTCTCTCCTGTGAATTCTACTACTACTTAATTGTGTTGATGGTGAAAAGATGAA-GCTGTGTGTTCTt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- i mm10.chr19 C 0 I 866 s canFam3.chr1 35217318 309 - 122678785 aaaaaaTTACAGTCCCTGTTCTGATATAACATTTTCTTATTCTTTTCAAACAGC--------TTTAAAAAATTAACAGTAATAGTACTTACTTTTTTTGATGATGAAAATATTAAGCCAGAGCATTCTTTTTTATTTTattttatttatttattcatgagagacagagagaggcagagacacaggcagagggagaagcaggcaccatgcaggagcctgatgtgggactagatcccaggaccccaggatgacgctctgggctgaaggcaaatgctaaactgctgagccacccagggatccTCAAGCCAGAACAttctt i canFam3.chr1 I 288 C 0 a score=2379328.000000 s hg38.chr9_GL383541v1_alt 9846 725 + 171286 aatcccagctcagtagaatcaccttcaagagacttaaagaaataccaatactttgcttctatcccagaaattattatctgatGAGT---------GCCAGTCTTTGTATTAAAAAGAAACAATTCCTCAGATGGTAGACAGAGCTCATGGACAGCTGGAGCTGTGATTTACTGGATTAGGTCATTGAGGCATCCCGCAACGTCTGGTA-GTAG--AGTTTCTTCATTATCACCAATTGTTTGGGCCTTGCGTACTGGGAAAATTGGAAAGAATTAGTGTCATTTGACATCTTTTAAGTCTCCAGTGTTCTACCTGTTTGCATTTCAGGCCTCCAGATTTAGCAGTAAGCCTGTGACTCAGCTTCTCAATGCTATTGTGTCTTTGCACACCA----------------------------TGCACACACCCCACACACCTGTTCAGAGCTGACATTCACTATCTGTCATCCTCCCAGTTGGTGTCCATTCTGTCTCTCAGTGCCAAGGCCTTTATTATGAATATCACCCCATCCGTGTTCATGTCAATCAAATCACTGTGTGTGGATCCCCACTCTAACGGATGAAT-ATGTCAGAGATTATGAATCAGAAGCTAAGCTGGGGTTTCATTGCTGTTCTT-GGAAATGTTTTTGGCTACAGAATGCTTTATTTTTCCTGTTT------CCATGCCAAAGCACTCAAACAAAACTTGTAAAGGAGAAAGCATACCACCTGGGTTTAGCCTAAATTGCTCATG-GGCCTCCC-----------------------------------------------------------------------------------TAGTCT s panTro4.chr9 68575523 725 + 137840987 aatcccagctcagtagaatcaccttcaagagacttaaagaaataccaatactttgcttctatcccagaaattattatctgatGAGT---------GCCAGTCTTTGTATTAAAAAGAAACAATTCCTCAGATGGTAGACAGTGCTCATGGACAGCTGGAGCTGTGATTTGCTGGATTAGGTCATTGAGGCATCCCGCAACGTCTGGTA-GTAG--AGTTTCTTCATTATCACCAATTGTTTGGGCCTTGCGTACTGGGAAAATTGGAAAGAATTAGTGTCATTTGACATCTTTTAAGTCTCCAGTGTTCTACCTGTTTGCATTTCA-GCCTCCAGATTTAGCAGTAACCCTGTGACTCAGCTTCTCAATGCTATTGTGTCTTTGCACACCA----------------------------TGCACACATCCCACACACCTGTTCAGAGCTGACATTCACTATCTGTCATCCTCCCAGTTGGTGTCCATTCTGTCTCTCAGTGCCAAGGCCTTTATTATGAATATCACCCCATTCGTGTTCATGTCAATCAAATCACTGTGTGTGGATCCCCACTCTAACGGATGAATAATGTCAGAGATTATGAATCAGAAGCTAAGCTGGGGTTTCATTGCTGTTCTT-GGAAATGTTTTTGGCTACAGAATGCTTTATTTTTCCTGTTT------CCATGCCAAAGCACTCAAACAAAAGTTGTAAAGGAGAAAGCATACCACCTGGGTTTAGCCTAAATTGCTCATG-GGCCTCCC-----------------------------------------------------------------------------------TAGTCT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64728938 723 + 135191526 aatcccagctcagtagaatcaccttcaagagacttaaagaaataccaa-actttgcttctatcccagaaattattatctgatgagt---------ACCAACCTTTGTATTAAAAAGAAACAATTCCTCAGATGGTAGACAGTGCTCATGGA-AGCTGGAGCTGTGATTTGCTGGATTAGGTCATTGAGGCATCTTGCAACATCTGGTA-GTAG--AGTTTCTTCATTATCACCAATTGTTTGGGCCTTGGGTACTGGGAAAATTGGAAAGGATTAGTGTCATTTGACATC-TTTAAGTCTCCAGTGTTCTACCTGTTTGCATTTCAGGCCTCCAGATTTAGCAGTAACCCTATGACTCAGCTTCTCAATGCTATTGTGTCTTTGCACACCA----------------------------TTCACACACCCCACACACCTGTTCAGAGCTGACGTTCACTATCTGTCATCCTCCCAGTTGGTGTCCATTCTGTCTCTCAGTGCCGAGGCCTTTATTATGAATATCACCCCATCCGTGTTCATGTCAATCAAATCACTGTGTGTGGATCCCCACTCTAACAGATGAATAATGTCAGAGATTATGAATCAGAAGCTAAGCTGGGGTTTCATTGCTGTTCTT-GGAAATGTTTTTGGTTACAGAATGCTTTATTTTTCCTGTTT------CCATGCCAAAGCACTCAAACAAAACTTGTAAAGGAGAAAGCATACCACCTGGGTTTAGCCTAAATTGCTCATG-GGCCTCCC-----------------------------------------------------------------------------------TAGTCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57769658 721 - 122973662 aatcccagctcagtagaatcaccttcaagagacttaagaaaataccaatactttgcttctatcccagaaattattatctgatGAGT---------GCCAACCTTTATATTAAAAAGAAACAATTCCTCAGATGGTAGACAGTGCTCATAGACAGCTGGAGCTGTGATTTGCTGGATTAGGTCATTGAGGCATCTCGCAATGTCTGGTA-GTAG--AGTTTCTTCATTATCACCAATTGTTTGGGCCTTGGGTACTGGGAAAATCGGAAAGAATTAGTGTCATTTGACATG-TTTAAGTCTCCAGTGTTCTACCTGTTTGCATTTCAGGCCTCCAGATTTAGCAGTAACCCTGTAACTCAGCTTCTCAATGCTAATGTGTCTTTGCACACCA----------------------------TGCACACATCCCACACACCTGTTCAGAGCTGACATTCACTATCTGTCATCCTTCCAATTGGTGTCCATTCTGTCTCTCAGTGCTGAGCCCTTTATT----GTATCACCCCATCCGTGTTCATGTCAATCAAATCACAGTGTGTGTATCCCCACTCTAACAGATGAATAATGTCAGAGATTATGAATCAGAAGCTAAGCTGGGGTTTCATTGCTGTTCTT-GGAAATGTTTTTGGCTACAGAATGCTTTATTTTTCCTGTTT------CCATGCCAAAGCACTCAAACAAAACTTGTAAAGGAGAAAGCACACCACCTGGGTTCAGCCTACATTGCTCATG-GGCCTCCC-----------------------------------------------------------------------------------TAGTCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79702597 701 + 112192347 AATCCCAGCTCAGTAGAATCACCTTCAAGAGACTTAAGCAAATACCAATCATTTGCTTCTATCCCAGAAATTATTATCTGATGAGT---------GCCAACCTTTATATTAAAAAGAAACAATTCCTCAGATGGTAGATGGTGCTCATGGACAGCTGGAGCTGTGATTTGCTGGATTAGGTCATTGAGACATCTCGCAACGTCTGGTA-GTAG--AGTTTCTTCATTATCACCAATTGTTTGGGCCTTGGGTACTGGGAAAATTGGAAAGAATTAGTGTCATTTGACATC-------------------------TTTGAATTTCAGGCCTCCAGATTTAGTAGTAACCCTGTGACTCAGCTTCTCAATGCTAATGTGTCTTTGCACACCG----------------------------TGCACACACCCCACACACCTGTTCAGAGCTGACATTCACTATCTGTCATCCTCCCAGTTGGTGTCCGTTCTGTCTCTCGGTGCTGAGGCCTTTATTGTGAATATCACCCCATCCATGTTCATGTCAATCAAACCACAGTGTATGGATCCCCACTCTAACAGATGAATAATGTCAGAGATTATCAATCAGAAGCTAAGCTGGGGTTTCATTGCTGTTCTT-GGAAATGTTTTTGGCTACAGAAAGCTTTATTTTTCCTGTTT------CCATGCCAAAGCATTCAAACAAAACTTATAAAGGAGAAAGCACACCACCTGGGTTTAGCCTAAGTTGCTCATG-GGCCTCCC-----------------------------------------------------------------------------------TAGTCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80783440 701 + 112612857 AATCCCAGCTCAGTAGAATCACCTTCAAGAGACTTAAGCAAATACCAATCATTTGCTTCTATCTCAGAAATTATTATCTGATGAGT---------GCCAACCTTTGTATTAAAAAGAAACAATTCCTCAGATGGTAGATGGTGCTCATGGACAGCTGGAGCTGTGATTTGCTGGATTAGGTCATTGAGACATCTCGCAACGTCTGGTA-GTAG--AGTTTCTTCATTATCACCAATTGTTTGGGCCTTGGGTACTGGGAAAATTGGAAAGAATTAGTGTCATTTGACATC-------------------------TTTGAATTTCAGGCCTCCAGATTTAGTAGTAACCCTGTGACTCAGCTTCTCAATGCTAATGTGTCTTTGCACACCG----------------------------TGCACACACCCCACACACCTGTTCAGAGCTGACATTCACTATCTGTCATCCTCCCAGTTGGTGTCCGTTCTGTCTCTCGGTGCCGAGGCCTTTATTGTGAATATCACCCCATCCATGTTCATGTCAATCAAACCACAGTGTATGGATCCCCACTCTAACAGATGAATAATGTCAGAGATTATGAATCAGAAGCTAAGCTGGGGTTTCATTGCTGTTCTT-GGAAATGTTTTTGGCTACAGAAAGCTTTATTTTTCCTGTTT------CCATGCCAAAGCATTCAAACAAAACTTATAAAGGAGAAAGCACACCACCTGGGTTTAGCCTAAGTTGCTCATG-GGCCTCCC-----------------------------------------------------------------------------------TAGTCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76832212 701 + 107442819 AATCCCAGCTCAGTAGAATCACCTTCAAGAGACTTAAGCAAATACCAATCATTTGCTTCTATCCCAGAAATTATTATCTGATGAGT---------GCCAACCtttgtattaaaaagaaacaattcctCAGATGGTAGATGGTGCTCATGGACAGCTGGAGCTGTGATTTGCTGGATTAGGTCATTGAGACATCTCGCAACGTCTGGTA-GTAG--AGTTTCTTCATTATCACCAATTGTTTGGGCCTtgggtactgggaaaattggaaaGAATTAGTGTCATTTGACATC-------------------------TTTGAATTTCAGGCCTCCAGATTTAGTAGTAACCCTGTGACTCAGCTTCTCAATGCTAATGTGTCTTTGCACACCg----------------------------tgcacacaccccacacacctgTTCAGAGCTGACATTCACTATCTGTCATCCTCCCAGTTGGTGTCCGTTCTGTCTCTCGGTGCCGAGGCCTTTATTGTGAATATCACCCCATCCGTGTTCATGTCAATCAAACCACAGTGTATGGATCCCCACTCTAACAGATGAATAATGTCAGAGATTATGAATCAGAAGCTAAGCTGGGGTTTCATTGCTGTTCTT-GGAAATGTTTTTGGCTACAGAAagctttatttttcctgttt------ccatACCAAAGCACTCAAACAAAACTTATAAAGGAGAAAGCACACCACCTGGGTTTAGCCTAAGTAGCTCATG-GGCCTCCC-----------------------------------------------------------------------------------TAGTCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81096108 701 + 108555830 AATCCCAGCTCAGTAGAATCACCTTCAAGAGACTTAAGCAAATACCAATCCTTTGCTTCTATCCCAGAAATTATTATCTGATGAGT---------GCCAACCTTTGTATTAAAAAGAAACAATTCCTCAGATGGTAGATGGTGCTCATGGACAGCTGGAGCTGTGATTTGCTGGATTAGGTCATTGAGGCATCTCACAACGTCTGGTA-GTAG--AGTTTCTTCATTATCACCAATTGTTTGGGCCTTGGGTACTGGGAAAACTGGAAAGAATTAGTGTCATTTGACATC-------------------------TTTGAATTTCAGGCCTCCAGATTTAGCAGTAACCCTGTGACTCAACTTCTCAATGCTAATGTGTCTTTGCACACCG----------------------------TGCACACACCCCACACACCTGTTCAGAGCTGACATTCACTGTCTGTCATCCTCCCAGTTGGTGTCCGTTCTGTCTCTCGATGCCGAGGCCTTTATTGTGAATATCACCCCATCCGTGTTCATGTCAATCAAATCACAGTGTATGGATCCCCACTCTAACAGATGAATAATGTCAGAGATTATGAGTCAGAAGCTAAGCTGGGGTTTCATTGCTGTTCTT-GGAAATGCTTTTGGCTACAGAAAACTTTATTTTTCCTGTTT------CCATGCCAAAACACTCAAACAAAACTTATAAAGGAGAAAGCACACCACCTGGGTTTAGCCTAAGTTGCTCATG-GGCCTCCC-----------------------------------------------------------------------------------TAGTCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111315853 720 - 210400635 agtctcagctcagtagaatcaccttcaagagttttgaggaaataccagtactttgcttctatcccagaaattatgatttGGTGAGT---------GCCAACCTTTGCATTAAAAAGAAACAACTGCCCAGATTGCAGACAGTGCTCATGGACAGCTGGAGCTGCGATTTACTGGATTAGGTCACCAAGGCATCTTGCAATGTCTGGTAGGTAGACATTATCTTCATTATCACCAATTATTTGGGTCTTGGGTACTGGGAAAATTGGAAAGAA-CAGTGTTATTTGACATC-CTTAAATCCCCAGTGTTTTACCTGTTTGTATTTTAGGTTTCCAGATTTAGCAGTAACCCTGTGACTCAGCTTCTCAGTGCAAACGGGTCTTTGCACACCA----------------------------TGCACACACCC--CACACCTGTTCAGAGCTGACATTTACTCTCTATCATCCTCCCAGTTGGTGTCCATTCCGTCTCTCAGTTCTGAGGCCTTTGTTGTGAATATCACCCTGTCCCTGTTCAGTTCAATCAAATCACAGTGTGTGGATCTTCACTCTAACAGATGAATAATGTCAGAGAATATGAATCAGAAGCTAAGCTGGGGTTTCATTGCTGTTCTT-GGAAATGATTTTGGCTACAGAACACTTTATTCTTCCTGTTT------TCATGCCAAAGCACTCAAAC-----TTGTAAAGGAGAAATCATACCACCTGGGTTTAGCCTAAGCTGCTCATG-GACCTCCC-----------------------------------------------------------------------------------TAGTCT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35217627 808 - 122678785 aaccatggcttagtagaatcaccttggagagctttaaggaagtaccagtgatttggtcctatcccagaaataatgatttgatcagtctgctgggatccaacctttgtattaaaaagagcaaactccccaggtgttgg-------taatatacagaaggAATCATG-TTGGTTGGATTGGTTCATGGAGGCATCTTGCAATGCCTCAGG-GTAG--AGTTTCTTCATTATCACCAGTCACCCAGGCCTTGGGCACTTTGAAAATCTGAAGGAATTGGTGTCATTTACCATC-TTTAAATAGCCA---------------GAATTTCAGGCTTTCAGA-TTAGTGGTGATGGTGTAGCTTGATGTCTCATCAGTAATGGCTCTTTGCACACCACATACATGTACAAGCATGCACACCCCCCCACACACACCTCATTCGCCTGTTCAGAGCTGATATTTGTCATCTGTCCCCCTCCCAGATGGTGTCCATTCTGCCTCTGAGTA-----------GTT----GTATCACTCCCTCTGT-TCCGTTTAGATCAAATCACAGAGTGTAGATCCTCAATCTAACACATTAATAAGGTCAGAGACTGTAAATCAGAAGCTAAGCCCGGGTTTCATGGCTCTTTTTGGGGAATGTTTTAGGCTGCAAAATTCTTTATTCTTCCTTTTTTCCAGGCCTTGCTAAGG-----AAACAGAACTTGAAGAGGGAGAAGCATACTATTTGGGTTTAGCCTAAGTTGTACAAACGGCTTCCCAgggatccctgggtggcgcagcggtttagcgcctgcctttggtccagggcgctctcctggagacccgagatcgaatcccacgttagtct i canFam3.chr1 C 0 I 137 e mm10.chr19 37968558 866 - 61431566 I a score=178564.000000 s hg38.chr9_GL383541v1_alt 10571 53 + 171286 CTGGAGCCACCATTAGCTAGAA-TATGTCAAATTCTGGTGT-GCTCTTCCTCACT s panTro4.chr9 68576248 53 + 137840987 CTGGAGCCACCATTAGCTAGAA-TATGTCAAATTCTGGTGT-GCTCTTCCTCACT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64729661 53 + 135191526 CTGGAGCCACCATTAGCTAAAA-TATGTCAAATTCTGGTGT-GCTCTGCCTCACT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57770379 53 - 122973662 CTGGAGCCACCATTAGCTAGAA-TATGTCAAATTCTGGTGT-GCTCTGCCTCACT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79703298 53 + 112192347 CTGGAGCCACTGTTAGCTAGAA-TATGTCAAATTCTGGCGT-GCTCTGCCTCACT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80784141 53 + 112612857 CTGGAGCCACTGTTAGCTAGAA-TATGTCAAATTCCGGCGT-GCTCTGCCTCACT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76832913 53 + 107442819 CTGGAGCCACTGTTAGCTAGAA-TATGTCAAATTCCGGCGT-GCTCTGCCTCACT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81096809 53 + 108555830 CTGGAGCCACTGTTAGCTAGAA-TATGTCAAATTCTGGTGT-GCTCTGCCTCACT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111316573 53 - 210400635 CTGGAGTCATCACTAGCTAAAA-TATGTTAAATTCCAGTGT-CCTCTGCCTCACT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35218572 55 - 122678785 CTGGAGCCGCCATTAACTGTAATTATGTTGAATTCCAATGTCCCTTCAGCTCACT i canFam3.chr1 I 137 C 0 e mm10.chr19 37968558 866 - 61431566 I a score=2673571.000000 s hg38.chr9_GL383541v1_alt 10624 763 + 171286 CTTAACCCTAATAGGCAACACAGAGTGTTAGCGCCTGGGATCTGGGGGG-TGTCCTAGGGGTGAACATGTGTGCACACAAACCAGCCTGTA-----------CCTCTGACACAGCCACGATGCTGCCCATTCTCACTGCAATGAcctctgaaatgc---caaagtcatggttgttggtagcaaagcggggcatggcactgctgctcacctgc-tttcattttaatactgtcacaatccttattaatg-caggttgtagagccatttgtggcccagtgtttttttagagatttagggaaacagatttttctggctttcccaacagcctggcgttactcttggactcagataggagaccatggagctgggctgggacagactcaggtggcagga-tccaagctgtttcatagtctctatttccctccaacatccaaggcctggcacttccttccagaggttaagttct-ctctctgtggcctca----tctgcctctcaggaaagtggatttttgagagtctgcct--------tt---ctcc------ggtttgccaaatgtgcTGCCCTGACCCCCGCAAGCCTGCTTTTACTCCCTGTTCAGTCTGTTGCTCCTCTTCAGATTGGCTCTGTGCTCCCAGAACACACCTGTG-----ATTTCATTTTTATACATA------------------------------------------TTCCCCTGGGT-------AATTTAAATGTAGTTCTTTTTCTTCTACTCATAGGACTGCAGCTTAGGCTGGTTCTTGGGCCATGTGGACCAATGAGGATATGCTATTCCTTAGACTttccttcaacaaacatcttttgagc s panTro4.chr9 68576301 763 + 137840987 CTTAACCCTAATAGGCAACACAGAGTGTTAGCGCCTGGGATCTGGGGGG-TGTCCTAGGGGTGAACATGTGTGCACACAAACCAGCCTGTA-----------CCTCTGACACAGCCACGATGCTGCCCATTCTCACTGCAATgaactctgaaatgc---caaagtcatggttgttggtagcaaagcggggcatggcactgctgctcacctgc-tttcattttaatactgtcacaatccttattaatg-caggttgtagagccatttgtggcccagtgtttttttagagatttagggaaacagatttttctggctttcccaacagcctggtgttactcttggactcagataggagaccatggagctgggctgggacagactcaggtggcagga-tccaagctgtttcatagtctccatttccctccaacatccaaggcctggcacttccttccagaggttaagttct-ctctctgtggcctca----tctgcctctcatgaaagtggatttttgagagtctgcct--------tt---ctcc------ggtttgccaaatgtgcTGCCCTGACCCCCGCAAGCCTGCTTTTACTCCCTGTTCAGTCTGTTGCTCCTCTTCAGATTGGCTCTGTGCTCCCAGAACACACCTGTG-----ATTTCATTTTTATACATA------------------------------------------TTCCCCTGGGT-------AATTTAAATGTAGTTCTTTTTCTTCTACTCATAGGACTGCAGCTTAGGCTGGTTCTTGGGCCATGTGGACCAATGAGGATATGCTATTCCTTAGACTTTCCTTCAACAAACATCTTTTGAGC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64729714 760 + 135191526 CTTAACCCTAATAGGCAACACAGAGTGTTTGCGCCTGGGATCTGGGGGGATGTCCTAGGGGTGAACATGTGTGCGCACAAACCAGCCTGTA-----------CCTCTGGCACAGCCATGATGCTGCCCATTCTCACTGCAATGAACTCTGAAATGC---CAAAGTCATGGTTGTTGGTAGCAAAGCGGGGCATGGCACTGCTGCTCACCTGC-TCTCATTTTAATACTGTCACAATCCTTATTAATG-CAGATTgtagagccatctgtggcccagtgtttttttagagatttagggaaacagatttttctggctttcccaacagcctggccttactcttggactcagataggagaccatggagctgggctgggatagactcaggtggcagga-tccaagctgtttcatagtctctatttccctccaacatctaaggcctggcacttccttccagaggttaagt-----tctctgtggcctca----tctgactctcatgaaagtggatttttgagagtctgcct--------tt---ctct------ggtttgccaaatgtgcTGCCCTGACTCCCTCAAGCCTGCTTTTACTCCCTGTTCAGTCTGTTGCTCCTCTTCAGATTGGCTCTGTGCTCCCAGAACACATCTGTG-----ATTTCATCTTTATACACA------------------------------------------TCCCCCTGGGT-------AATTTAAATGTAGTTCTCTTTCTTCTACTCACAGGACTGCAGCTTAGGCTGATTCTTGGGCCATGTGGACCAATGAGGATATGCTATTCCTTAGACTttccttcaacaaacatcttttgagc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57770432 764 - 122973662 CTTAACCCTAATAGGCAACACAGAGTGTTAGCTCCTGGGATCTGGGGGGATGTCCTAGGAGTGAACATGTGTGCACACAAACCAGCCTGTA-----------CCTCTGGCATAGCCACGATGCTGCCCATTCTCACTGCAATGAACCCTGAAATGC---CAAAGGCATGGTTGTTGGTAGCAAAGCTGGGCATGGCACTGCTGCTCACCTGC-TCTCATTTTAATACTGTCACAATCCTTATTAATG-CAGGTCATagagccatttgtggcccagtgtttttttagagatttagggaaacagatttttctggctttcccaacagcctggccttactcctggactcagataggagaccatggagctgggctgggacagactcaggtggcagga-tccaagctgtttcatagtctctatttccctccaacatccaaggcctggaacttccttccagaggttaagttct-ctctctgtggcctca----tctgcctcttatgaaagtggacttttgagagtctgcct--------tt---ctcc------ggtttgccaaatgtgcTGCCCTGACCCCTGCAAGCCTGCTTTTACTCCCTGTTTAGTCTGTTGCTCCTCTTCAGATTGGCTCTGTGCTCCCAGAACACATCTGTG-----ATTTCATTTTTATACATA------------------------------------------TCCCCCTGGGT-------AATTTAAATGTAGTTCTTTTTCTTCTACTCATAGGACTGCAGCTTAGGCTGGTTCTTGGGCCGTGTGGACCAGTGAGGATAGGCTATTCCTTAGACTttccttcaacaaacatcttttgagc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79703351 758 + 112192347 CTTAACCCTGATAGACAACACAGAGTGTTAGCTCCTGGGATCTGGGGGGATGTCCTAGGGGTGAACATGTGTGCACACAAACCAGCCTGCA-----------CCTCTGGCACAGCCACGATACTGCCCATTCTCACTGCAATgaaccctgaaatgc---caaaggcatggttgttggtagcaaagcggggcatggcactgctgctcacc------tcatgtgaataccgtcacaatccttattaatg-caggtcatagaaccatttgtggtccagtgtttttttagagatttagggaaacagatttttctggctttcctaacagcctggccttactcctggactcagataggaaaccatggagctgggct-gaacagactcatgtggcagga-tccaagctgtttcatagtctgtatttccctccaacacccaaggcctGGCACTTCCTTCCAGAGGTTAATTTCT-CTCTCTGTGGCCTCA----TCTGCCTCTCATGAAAGTGGACTTTTGAGAGTCTGCCT--------TT---CTCC------GGTTTGCCACCTGTGCTGCCCTGACCCCCACAAGCCTGCTTTTACTCCCCGTTCAGTCTGTTGCTCCTCTTCAGATTGGCTCTGTGCGCCAAGAACACATCTGTG-----ATTTCATTTTTATACATA------------------------------------------TCCCCCTGGGT-------AATTTAAATACAGTTCTTTTCCTTCTACCCATAGGACTGCAGCTTAGGCTGGTTCTTGCGCCGTGTGGAGTAGTGAGGATATGCTATTCCTCAGCCTttctttcaacaaacatcttttgagc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80784194 758 + 112612857 CTTAACCCTGATAGACAACACAGAGTGTTAGCTCCTGGGATCTGGGGGGATGTCCTAGGGGTGAACATGTGTGCACACAAACCAGCCTGCA-----------CCTCTGGCACAGCCACGATACTGCCCATTCTCACTGCAATGAACCCTGAAATGC---CAAAGGCATGGTTGTTGGTAGCAAAGCGGGGCATGGCACTGCTGCTCACC------TCATGTGAATACCGTCACAATCCTTATTAATG-CAGGTCATAGAACCATTTGTGGTCCAGTGTTTTTTTAGAGATTTAGGGAAACAGATTTTTCTGGCTTTCCTAACAGCCTGGCCTTACTCCTGGACTCAGATAGGAAACCATGGAGCTGGGCT-GAACAGACTCATGTGGCAGGA-TCCAAGCTGTTTCATAGTCTGTATTTCCCTCCAACACCCAAGGCCTGGCACTTCCTTCCAGAGGTTAATTTCT-CTCTCTGTGGCCTCA----TCTGCCTCTCATGAAAGTGGACTTTTGAGAGTCTGCCT--------TT---CTCC------GGTTTGCCACCTGTGCTGCCCTGACCCCCACAAGCCTGCTTTTACTCCCCGTTCAGTCTGTTGCTCCTCTTCAGATTGGCTCTGTGCGCCAAGAACACATCTGTG-----ATTTCATTTTTATACATA------------------------------------------TCCCCCTGGGT-------AATTTAAATACAGTTCTTTTCCTTCTACCCATAGGACTGCAGCTTAGGCTGGTTCTTGGGCCGTGTGGAGTAGTGAGGATATGCTATTCCTCAGCCTttctttcaacaaacatcttttgagc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76832966 758 + 107442819 CTTAACCCTGATAGACAACACAGAGTGTTAGCTCCTGGGATCTGGGGGGATGTCCTAGGGGTGAACATGTGTGCACACAAACCAGCCTGCA-----------CCTCTGGCACAGCCACGATACTGCCCATTCTCACTGCAATGAACCCTGAAATGC---CAAAGGCATGGTTGTTGGTAGCAAAGCGGGGCATGGCACTGCTGCTCACC------TCATGTTAATACCGTCACAATCCTTATTAATG-CAGGTCATAGAACCATTTGTGGTCCAGTGtttttttAGAGATTTAGGGAAACAGATTTTTCTGGCTTTCCTAACAGCCTGGCCTTACTCCTGGACTCAGATAGGAAACCATGGAGCTGGGCT-GAACAGACTCATGTGGCAGGA-TCCAAGCTGTTTCATAGTCTGTATTTCCCTCCAACACCCAAGGCCTGGCACTTCCTTCCAGAGGTTAAGTTCT-CTCTCTGTGGCCTCA----TCTGCCTCTCATGAAAGTGGACTTTTGAGAGTCTGCCT--------TT---CTCC------GGTTTGCCACCTGTGCTGCCCTGACCCCCGCAAGCCTGCTTTTACTCCCTGTTCAGTCTGTTGCTCCTCTTCAGATTGGCTCTGTGCGCCAAGAACACAtctgtg-----atttcatttttatacata------------------------------------------TCCCCCTGGGT-------AATTTAAATGTAGTTCTTTTCCTTCTACCCATAGGACTGCAGCTTAGGCTGGTTCTTGGGCCGTGTGGAGTAGTGAGGATATGGTATTCCTCAGCCTTTCTTTCAACAAACATCTTTTGAGC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81096862 758 + 108555830 CTTAACCCTGATAGACAACACAGAGTGTTAGCTCCTGGGATCTGGGGGGATGTCCTAGGGGTGAACATGTGTGCACATAAACCAGCCTGCA-----------CCTCTGGCACAGCCACGATACTGCCCATTCTCACTGCAATgaaccctgaaatgc---caaaggcatggttattggtagcaaaacggggcatggcactgctgctcacc------tcatgttaatactgtcacaatccttattaatg-caggtcatagaaccatttgtggtccagtgtttttttagagatttagggaaacagatttttctggctttcctaacagcctggccttactcctggactcagataggagaccatggagctgggct-gaacagacttatgtggcagga-tctaagctgtttcatcgtctgtatttccctccaacatccaaggcctggcacttccttccagaggttaagttct-ctctctgtggcctca----tctgcctctcatgaaagtggacttttgagcgtctacct--------tt---ctcc------ggtttgccaCCTGTGCTGCCCTGACCCCCGCAAGCCTGCTTTTACTCCCTGTTCAGTCTGTTGCTCCTCTTCAGATTGGCTCTGTGCTCCAAGAACACATCTGTG-----ATTTCATTTTTATACATA------------------------------------------TCCTCCTGGGT-------AATTTAAATGTAGCTCTTTTCCTTCTACCCATAGGACTGCAGCTTAGGCTGGTTCTTGGGCCGTGTGGAATAGTGAGGATATGCTATTCCTTAGCCTttctttcaacaaacatcttttgagc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111316626 796 - 210400635 CTTAACCCTGATAGGCAATACAGAGCATTAGCTCCTGGGATCTGGTACGATGTCCT-GGGGTGAACCTGTGTGCACACAAACCATCCTGTA-----------CCTCTAGCACAGCCATGCTGCTGCCCATTCTCACTGCAGTGAACCCTGAAATGC---CAAAGGCATGGTTGTCAATAGCAAAGCAGAGCATGGCATGGTTGCTCACCCGC-TGTCTTTTTAATACTACCACAGTCCTTATTAATG-CAGGTCATagagccatttgtggcccagtg-ttttgtagagatttaggggaacagatttttctggcttttccaacagcccagccttactcctggtctcagataggagaccatggagctgggctggaacagactcgggcggcagga-tgcaagctgtgtcatagtgtc--tttccctccaacatccaaggcctGGCACTTCCTTCCGGAGG--AGGTTCT-CTCTCTGTGGCCTCA----TCTGCCTCTCATGAAAGTGGGCTTTTGAGAGTCTGCCT--------TT---CTCT------GGTTTGCCAAATGTGCTGCCCTGACCCCCACAAGCCTGCTTTTACTCCCTGTTAG----GTTGCTCCTCTTAAGATTGGCTCTATGTTCCCAGAGCACATCTGTG-----ATTTCATTTTTGTAAATAATATATTCTCCTTGaaatatatattattttataaataataatttCCCCTGGGT-------AATTCAGATGTAGTTCTTTTTCTTCTAATCATAGGACTGCAGCTTAGGCTGGTTCTTTGGCCATGTGGACCAGTGAGGATGTGCTATTTCTTAGCcattccttcaacaagcatcttttgagt i calJac3.chr1 C 0 C 0 s mm10.chr19 37969424 748 - 61431566 CTTGATCCCAAGCGGTAGCATATAACCTTAGCTCCCAGGGCTTAAGAGGCCACTCAA-----GAACAGAAGTGTTCATGAAGCAGCTCATG-----------AAGGCAGGACAACAGCCATGCTGCACCTTCCCACAGT-GTGAAACTTGAAGTGC---CAACAGGGTGGTGATCTGCGAGGGAAGAGGACA--------CTATCTACCTGTGTCTCTTCTTACCTCTGTCACAGTTGGCATTAACACCAAGGCATAGAGCTGCTGCAAGATCAGCA-TTCTATGGAACTTTCAGGGGAGAGATTAGTCCAGCTTTTCTAATTGCTCAGCCTTTCTCCTCAACCCATAGAGGAGTCCA---ATCTGGGTC-----AGTCTCAGACAGCAGGACCCCAAGCTGCCTTGTAATCTG--TTTCCCTTTAGCACACAAGCCTAGA------CTTCTAATAGTCAAGTTCTCCTCCACCTTGCCCTGTTATTCTGCCTCTCATAACTGTGGACTTGTTAAAGCTAGCCT--------CTCCCCTCT------GGTTTATAAAATATTCTTCTCTCATCCCAGAGAG-ATCCCTTTACAACCAGTTGAGATTATTGCTTCTCTTTAGATTGGTTCTGTGAACCCAGGGCACATCTGGGCAGCTGACTCATCTCCACAACTG------------------------------------------TCTCTCTGGGG-------ACCAGAATTTCAGTCCCCTTTCTACTAATCAAAGAATTGCAGCTTTGGCAAACAACAGGGTCAGGTGTACCAACAAGGATATGCAATTCCTCAGTCTTTACCTCAGCATGCATTTCCTGAGC i mm10.chr19 I 866 I 2233 s canFam3.chr1 35218627 755 - 122678785 CTTAGCCCCAGCAGGTGACACAGAGCCTTAACTCCCAGGATTGGAGGGGATGTCCT-GGGGAGAACATGCATGTGCACAAGCCAGCCTACATACCCACCCACCCTGCCGCACAGCCAC-ATGCTGCCAATTCTCCCTGCAGTTAACTTTGAAATGCCCGCAAAG---------TCTGCAGCAAGGTAAGACAAGATA---CTGCTCACCTGC---TCTTCTTAATACTGCTCCA--------------GGGGTCATGGAGATGTTTGCAGCCCCATGT-------GAGATTTATGGGAATAGACTTTTCTGGGTTCCCGGA-AGCCCCGCCTTTCTCCTGGACCCAGACAGGAATCCACAGGGCTGGGCTGGGACAGGCTCAGATGGCAGAA-TGTGGGTGGTTTCATGATCTCTGTCTTCCTCCAACCCCCAAGACCTGGTGCCTTCATCCAGTGGCAGAGTCCT-CTCCCTGCGGCCCCC----TA-GCCTTTCTTG-CAGTGGG-TCCTGAGAGCCTCCCTCACCTTTCCT---CTCCTCACAGAGTGTATTGGGTATGCTGCTCTG--CCCAGAAAACCCACACTT-----CTGCTCAGACTACTGCTCCTCTTCATATTGGCTCTGGGCTCTCCAAGCACATCTGTGCAGTTAATTTGTTTCCATAAATA------------------------------------------CCTTCCTGGGTGACCTAGAGCTTAGATTCAGTTATTTCCCTTCTAATGGTAGGGCTGCAGCTGAGGCAGGCCTCTGGACAGTGTATACCAGTGAGGATGTGCCATCCCGTAGCCTGTCCTTCAG--aacatgtattgagt i canFam3.chr1 C 0 C 0 a score=301228.000000 s hg38.chr9_GL383541v1_alt 11387 89 + 171286 gactacaattagccatgtatagagatagcacaggagcagatacaaagataaaacacacttgctctgctttctacccttgaaac-tcagtc s panTro4.chr9 68577064 89 + 137840987 GACTACAATTAGCCATGTATAGAGATAGCACAGGAGCAGACACAAAGATAAAACACACTTGCTCTGCTTTCTACCCTTGAAAC-TCAGTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64730474 89 + 135191526 gactacaattagccgtgtatagagatagcacaggagcagatacaaagataaaacacacttactctgctttccacccttgaaac-tcagcc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57771196 89 - 122973662 gactacaattagccatgtatagagatagcacaggagcagatacaaagataaaacacacttgctctgctttctacccttgaaac-tcagcc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79704109 89 + 112192347 gactacaattagccacgtctagagataGCACAGGAGCAGATACAAAGATAAAACACACTTGCTCTGCTTTCTACCCTTGAAAC-TCAGCC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80784952 89 + 112612857 gactacaattagccacgtatagagatagcacaggagcagatacaaagataaaacacacttgctctgctttctacccttgaaac-tcagcc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76833724 89 + 107442819 GACTACAATTAGCCACGTATAGAGATAGCACAGGAGCAGATACAAAGATAAAACACACTTGCTCTGCTTTCTACCCTTGAAAG-TCAGCC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81097620 89 + 108555830 gactacaattagccatgtatagagagagcaccagagcagatacaaagataaaacacacttgctctgctttctacccgtgaaac-tcagcc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111317422 89 - 210400635 aactactattagccatgtatggagataGCACAGGAGCAGATCCAAAGATGAAACACACTTGCTCTGCTTTCTACCCTTGAAAC-TGAGCC i calJac3.chr1 C 0 C 0 s canFam3.chr1 35219382 82 - 122678785 gcctacaattagccaggcacacagatgacaggggagcagaaatgagagtgaagcagac-tgctcag-------cccttgaagtatcagct i canFam3.chr1 C 0 C 0 e mm10.chr19 37970172 2233 - 61431566 I a score=164257.000000 s hg38.chr9_GL383541v1_alt 11476 46 + 171286 tctatcgcagaacacagagacatagacaaagtcattgtcatacaGC s panTro4.chr9 68577153 46 + 137840987 TCTATCGCAGAACACAGAGACACAGACAAAGTCATTGTCATACAGC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64730563 46 + 135191526 tctatcgcagaacacagagacacagacaaagtcattgtcatacaGC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57771285 45 - 122973662 tctatcgaagaacacagagacataG-CAAAGTCATTGTCATACAGC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79704198 46 + 112192347 TGTATCGCAGAACACAGAGGCATAGACAAAGTCATTGTCATACAGC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80785041 46 + 112612857 tctatcacagaacacagagacatagacaaagtcattgtcatacaGC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76833813 46 + 107442819 TCTATCGCAGAACACAGAGACATAGACAAAGTCATTGTCATACAGC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81097709 46 + 108555830 tctgtcgcagaacacagagacatagacaaaGTCATTGTCCTGCACC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111317511 46 - 210400635 TCCATAGCAGAACACAAAGACATAGACAGAGTCGTTGTAATGCAGC i calJac3.chr1 C 0 C 0 s mm10.chr19 37972405 46 - 61431566 TCTATTGTAAACACCAGAGGCAGAGACAATGTGATTGCACCACAGC i mm10.chr19 I 2233 C 0 s canFam3.chr1 35219464 44 - 122678785 tcccttgcagataacaga--cataaacaaagttaccataatacagc i canFam3.chr1 C 0 I 1454 a score=1653685.000000 s hg38.chr9_GL383541v1_alt 11522 527 + 171286 GTTctgtggcatgaatgtt-tatgt-------------------ctgccc--------------------caaattcatatgctggaatcctcacc---catgaaacgat--ggcattagaagtgg-ggacctttgggaggtgattaggtcatgcgggcagagccatcataaataggatttagcacccttataaaagaggcccaagagagaccc-ttgcctcttctgccatgtgaggatacagtgaggaaata-gttatc-tgtgaagaatcaggcccttacccaacacccagccaccagaat--tgagaaatacattttggctgttg-----ataagccacccagtgtatgatacgttgttatagcagcctgcacagcctaggacaCAGCATCATACATGCTGCAGCACAGGCACACCAACAACATAGGAGAGGGGCCATTTGAACTGGGTCTTGAGAAATGAATAGAAAtatat--tagtttgtagtaactaagtaccacaaaccagatggcttaaacaacagaaatttttattatctcactgttttggaggccagaagaccaaga-------tcagtggcactggtgtc s panTro4.chr9 68577199 527 + 137840987 GTTctgtggcatgaatgtt-tatgt-------------------ctgccc--------------------caaattcatacgctggaatcctcacc---catgaaacgat--ggcattagaagtgg-ggacctttgggaggtgattaggtcatgcaggcagagccatcataaataggatttagcacccttataaaagaggcccaagagagaccc-ttgcctcttctgccatgtgaggatacagtgaggaaatc-gttatc-tgtgaagaatcaggcccttacccaacacccagccaccagaat--tgagaaatacattttggctgttg-----ataagccacccagtgtatgatacgttgttatagcagcctgcacagcctaggacaCAGCATCATACATGCTGCAGCACAGGCACACCAACAACATAGGAGAGGGGCGATTTGAACTGGGTCTTGAGAAATGAATAGAAAtatat--tagtttgtagtaactaagtaccacaaaccagatggcttaaacaacagaaatttttattatctcactgttttggaggccagaaggccaaga-------tcagtggcactggtgtc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64730609 527 + 135191526 GTTctgtggcatgaatgtt-tatgt-------------------ctgccc--------------------caaattcatatgctggaatcctcacc---cacgaaacgat--ggcattagaagtgg-gggcctttgggaggtgattaggtcatgggtgcagagccatcataaataggatttagcacccttataaaagaggcccaagagagaccc-ttgcctcttctgccatgcgaggatacagtcaggaaatc-gttatc-tgtgaagaagcaggcccttacccaacacccagccaccagaac--tgagaaatacattttggttgatc-----ataagccacccagtgtatgatactttgttatagcagcctgcaaagcctaggacaCAGCATCATACATGCTGCAGCACAGGCACACCACCAACATAGGAGAGGGGCCATTGGAACTGGGTCTTGAGAAATGAATAGAAAtatat--tagttcgtagtaactaagtaccacaaaccagatggcttaaacaacagaaatttttattatctcactgttttggaggccagaagaccaaga-------ttagtggcactggtgtc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57771330 526 - 122973662 GTTctgtggcatgaatgtt-tatgt-------------------ctgccc--------------------caaattcatatgctggaatcctcacc---catgaaaagat--ggcattagaagtgg-gggcctttgggaggtgattaggtcataggggcagagccatcataaataggatttagcacccttataaaaggggcccaacagagaccc-ttgcctcttctgccatgtgaggatacagtgaggaaatc-gttatcttgtgaagaagcaggccc-tacccaacagccagccaccagaac--tgagaaatacattttggttgttg-----ataagccacccagtgtatgatactttgttatagaagcctgcacag-ctaggacaCAGCATCATACACGCTGCAGCACAGGCACACCAACAACATAGGAGAGGGGCCATTTGAACTGGGTCTTGAGAAATGAATAGAAAtatat--tagttcgtagtaactaagtaccacaaaccagatggcttaaacaacagaaatttttattatctcactgttttggaggccagaagaccaaga-------tctgtggcactggtgtc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79704244 524 + 112192347 GTTctgtggcatgaatgtt-tatgt-------------------ctgccc--------------------caaactcatatgctggaatcctcacc---cacaaaacaat--ggcattagaagtgg-gggcctttgggaggtaattaggtcttgggagcagagccatcataaataggatttagcacccttatagaagaggcccaagagagatcc-ttgcctcttctgccatgtgaggatacagtgaggaaatc-gttatt-tgtgaagaagcagacccttacccaacacccagccaccagaac--tgagaaatatattttggctgttg-----ataagccacccagtgt---acactttgttatagcagcctgcacagcctaggacaCAGCATCATACACGCTGCGGCACAGACACACCAACGACATAGGAGAGGGGCCCTTTGAACTGGGTCTTGAGAAATGAATAGAAAtatat--tagttcgtagtaactaagtaccacaaaccagatggcttaaacaacagaaaaagttattgtctcactgttttggaggccagaagaccaaga-------tcactggcactgctatc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80785087 524 + 112612857 GTTctgtggcatgaatgtt-tatgt-------------------ctgccc--------------------caaactcatatgctggagtcctcacc---cacaaaacaat--ggcattagaagtgg-gggcctttgggaggtgattaggtcttgggagcagagccatcataaataggatttagcacccttatagaagaggcccaagagagatcc-ttgcctcttctgccatgtgaggatacagtgaggaaatc-gttatt-tgtgaagaagcagacccttacccaacacccagccaccagaac--tgagaaatatattttggctgttg-----ataagccacccagtgt---acactttgttatagcagcctgcacagcctaggacaCAGCATCATACACGCTGCAGCACAGACACACCAACAACATAGGAGAGGGGCCCTTTGAACTGGGTCTTGAGAAATGAATAGAAATATAT--TAGTTCGTAgtaactaagtaccacaaaccagatggcttaaacaacagaaaaagttattgtctcactgttttggaggccagaagaccaaga-------tcactggcactgctatc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76833859 524 + 107442819 GTTCTGTGGCATGAATGTT-TATGT-------------------Ctgccc--------------------caaattcatatgctggaATCCTCACC---CACAAAACAAT--GGCATTAGAAGTGg-gggcttttgggaggtgattaggtcttgGGAGCAGAGCTATCATAAATAGGATTTAGCACCCTTATAGAAGAGGCCCAAGAGAGATCC-TtgcctcttctgccatgtgaggatacagtgaggAAATC-GTTATT-TGTGAAGAAGCAGACCCTTACCCAACACCCAGCCACCAgaac--tgagaaatatattttggctgttg-----ataagccacccagtgt---acactttgttatagcagcctgcaCAGCCTAGGACACAGCATCATACACGCTGCAGCACAGACACACCAACAACATAGGAGAGGGGCCCTTTGAACTGGGTCTTgagaaatgaatagaaatataT--TAGTTCGTAGTAACTAAGTACCACAAACcagatggcttaaacaacagaaaaagttATTGTCTCActgttttggaggccagaagaccAAGA-------TCACTGGCACTGCTATC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81097755 524 + 108555830 GTTctgtggcatgaatgtt-tatgt-------------------ctgccc--------------------caaattcatatgctggaatcctcacc---cacaaaacaat--ggcattagaagtgg-gggcctttgggaggtgattaggtcttgggagcagagccatcataaataggatttagcacccttatagaagaggcccaagagagatcc-ttgcctcttctgccatgtgaggatacagtgaggaaatc-gttatc-tgtgaagaagcaggcccttacccaacacccagccaccagaac--tgagaaatacattttggctgttg-----ataagccacccagtgt---acactttgttatagcagcctgcacagcctaggacaCAGCATCATACACGCTGCAGCACAGGCACACCAACAACATAGGAGAGGGGCCATTTGAACTGGGTCTTGAGAAATGAATAGAAATATAT--TAGTTCGTAgtaactaagtaccacaaaccagatggcttaaacaacagaaaatgttattgtctcactgttttggaggccagaagaccaaga-------tcactggcactgctatc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111317557 525 - 210400635 Atgctatggcatgaacgtt-tatgt-------------------ttg-cc--------------------caaattcatatgctggaattctcacc---cacaaaatgat--ggcattagaagggtcaggcctttgagaggtgattaggtcaggggggcggagccatcataaatgggatttagcacacttataaaagaggcccaagagagaccc-ttgccccttctaccatgtgaggatacggtgaggaaatcaattatc-tgtggagaagcaggcccttacccaacacacagccatcagaac--tgagaaatacattttggctattg-----ataagccacccagtatatgatactttgttatagcagcctgaatagcttaggacaCAGGATTATATACTCTGCAGCACAGGCAGAC---AGACATAGAAGAAGGGCCATTTGAACTGGATCTTGAGAAATGAATGGGAAtatat--tagtttgtagtaactaagtaccacaaactggatggcttaaacaacagaaatttttattgtctaactattttggaggccagaagaccaaga-------ttattgacacttgtgtc i calJac3.chr1 C 0 C 0 s mm10.chr19 37972451 537 - 61431566 AAGCTGTGGTATCACTATCATGTGTCACCACCACCTTCCCCCAGCTGCCCACACATACAGGACATGCTGTTAAGTTCAAATGCTAGA-TTCTCATCTATTATTAGAAGATTAggtattaggaggta-aaacttttggaaaatgggtgagttgcgggatcagagtccttgtagatggga-ttaacatccttataaaa-agtccccagagagaccctttatccctcatgacatgtgaaggccaagtgagagcatg-actaac---tgaagacacaagccctcactggacag-cagcctccagagccattcgaggtaaacttagtctgctgtttacataa---aacctgcctgagacatttagttgtggcagcctgaacagcctgagacaCGGCTT----------------AAGGGACAGCAGAAACA--------------TTTGGCCTGGGTCTTGAGACAAGAACAAGAATgtttgctaggctgc--taa--aagtattgcacactgggtggcttaacca---------catattgcttctcagggctagaagccagaagttggagatgaaggctcagtggtgttgattcc i mm10.chr19 C 0 I 258 e canFam3.chr1 35219508 1454 - 122678785 I a score=178061.000000 s hg38.chr9_GL383541v1_alt 12049 63 + 171286 --ggggattgttccttttgagggctgtgggtgaatctgtttgacgcccctctccaagcccctggt s panTro4.chr9 68577726 65 + 137840987 agggggattgttccttttgagggctgtgggtgaatctgtttgacgcccctctccaagcccctggt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64731136 65 + 135191526 agggggattgttccttttgagggctgtgggtgaatctgtttgatgcccctctccaagcccctggt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57771856 65 - 122973662 agggggattgttccttttgagggctgtgggtgaacctgtttgacacccctctccaagcccctagC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79704768 65 + 112192347 agagggattgttccttttgagggctgtgggtgaatctgtttgatgcccctctccaagcccctggt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80785611 65 + 112612857 agagggattgttccttttgagggctgtgggtgaatctgtttgatgcccctctccaagcccctggt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76834383 65 + 107442819 AGAGGGATTGTTCCTTTTGAGGGCTGTGGGTGAATCTGTTTGATGCCCCTCTCCAAGCGCCTGGT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81098279 65 + 108555830 agagggattgttccttttgagggctgtgggtgaatctgtttgatgcccctctctaaggccctggt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111318082 38 - 210400635 ---------------------------gggtgaatctgtttgatggccctctccaagctcctgga i calJac3.chr1 C 0 C 0 e mm10.chr19 37972988 258 - 61431566 I e canFam3.chr1 35219508 1454 - 122678785 I a score=18379.000000 s hg38.chr9_GL383541v1_alt 12112 6 + 171286 cttcct s panTro4.chr9 68577791 6 + 137840987 cttcct i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64731201 6 + 135191526 cttcct i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57771921 6 - 122973662 CTTCCC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79704833 6 + 112192347 cttcct i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80785676 6 + 112612857 cttcct i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76834448 6 + 107442819 CTTATT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81098344 6 + 108555830 cttcct i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111318120 6 - 210400635 tttcct i calJac3.chr1 C 0 C 0 s canFam3.chr1 35220962 6 - 122678785 CCTCTT i canFam3.chr1 I 1454 C 0 e mm10.chr19 37972988 258 - 61431566 I a score=2948058.000000 s hg38.chr9_GL383541v1_alt 12118 819 + 171286 ggcCTCAG-----CACTGCCTGTGG---GTAGAGGTAGGAGGCCGGGGA-CCTGGGAACCAGACATTTCAAAGT-TC-TGCTCACACCTTCCCTGTGTTGGGTGGATGGCATTGAGGTTATAAGGGCTTTGGTAGgagct--tgagc-tggctcccgccccagccctgtacttttgagcaagtcacatcaaatctctgagcctagtttcttcctccatgaaTTTACCATGAAACCACCTGGCACATCACAGACACTTAACAAAACATGGTAGTATTATCACTGTGACTGGTCAGCCCAGAAAACCTCAATTT-AAAAAAAATTAGAAGGTTGCATTCAAGCTGTAATGAAGGA---TGTCTGACTCCCAGCTAGGATCCGGAGTAAGCTGATGAAGAAAAGATTAATGAT----AGAAAGCATCTATTGAAGTATCTATTTCCTTTAAAATGCTCACTCTAGAAGATGTACCTACTTTATGGGTTCA-GTCATTTGACTGTGGCAGTTTGAACAGTGGGCTATATA--TTTTGTAATAAAAGGAGATTTG-TAAGGACTGATTGTCCCTTGGGTCTTGGTGCAT--CATGGGAGATGATTCAAATCCGTAGCAGGCACATGACTGCTCTTTGGGAGTAAGAGGCCAACAGTGCTGGACAGTAACCAAGGACCATC----GCTGGCCTCGGGGCAGAGCCTTCAGT---TACCTCCTGCTGGAATGCAACTACGGAGGTCACTGGCAGGACAAGCC-CAGAGCCTGGAATGATTTTGCCATCTCGTTT-T-AGCCTGATTGTGTGTAATGAGTGGGGGCCTGTTGG-----GTGTATGCAGAGAGAGAGAGAC-GACATGGAAG s panTro4.chr9 68577797 819 + 137840987 ggcCTCAG-----CACTGCCTGTGT---GTAGAGGTAGGAGGCCGGGGA-CCTGGGAACCAGACATTTCAAAGT-TC-TGCTCACACCTTCCCTGTGTTGGGTGGATGGCATTGAGGTTATAAGGGCTTTGGTAGgagct--tgagc-tggctcccgccccagccctgtacttttgagcaagtcacatcaaatctctgagcctagtttcttcctccatgaattgaccatgaaaccacctggcacatcacagACACTCAACAAAACGTGGTAGTATTATCACTGTGACTGGTCAGCCCAGAAAACCTCAATTA-AAAAAAAATTAGAAGGTTGCATTCAAGCTGTAATGAAGGA---TGTCTGACTCCCAGCTAGGATCCGGAGTAAGCTGATGAAGAAAAGATTAATGAT----AGAAAGCATCTATTGAAGTATCTATTTCCTTTAAAATGGTCACTCTAGAAGATGTACCTACTTTATGGGTTCA-GTCATTTGACTGTGGCAGTTTGAACAGTGGGCTATATA--TTTTGTAATAAAAGGAGATTTG-TAAGGACTGATTGTCCCTTGGGTCTTGGTGCAT--CATGGGAGATGATTCAAATCCGTAGCAGGCACATGACTGCTCTTTGGGAGTAAGAGGCCAACAGTGCTGGACAGTAACCAAGGACCATC----GCTGGCCTCGGGGCAGAGCCTTCAGT---TACCTCCTGCTGGAATGCAACTACGGAGGTCACTGGCAGGACAAGCC-CAGAGCCTGGAATGATTTTGCCAGCTCGTTT-T-AGCCTGATTGTGTGTAATGAGTGGGGGCCTGTTGG-----GTGTATGCAGAGAGAGAGAGAC-GACATGGAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64731207 817 + 135191526 ggcCTCAG-----CACTGCCTGTGG---GTAGAGGTAGGAGGCTGGGGA-CCTGGGAACCGGACATTTCAAAGT-TC-TGCTCAAACCTTCCCTGTGTTGGGTGGATGGCATTGAGGTTATAAGGGCTTTGGTAGgagct--tgagc-tggctcccaccccagccctgtacttttgagcaagtcacatcaaatctctgagcctagtttcttcctccatgaattgaccatgaaaccacctggcacatcacaggCACTCAACAAAACGTGGTAGTATTATCACTGTGACTGGTCAGCCCAGAAAACCTCAATTT-AAAAAAAACTAGAAGGTTGCATTCAAGCTGTAATGAAGGA---TGTCTGACTCACAGCTAGGATCCGGAGTAAGCTGATGAAGAAAAGATTAATGAT----AGAAAGCATTTTTTGAAGTATCTATTTCCTTTAAAATGCTCACTCTAGAAGATGTACCTACTTTATGGGTTCA-GTCATTTGACTGTGGCAGTTTGAACAATGGGCTATATA--TTTTGTAATAAAAGGAGATTGG-TAAGGACTGACTGTCCCTTGGGCCTTGGTGCAT--CATGGGAGATGATTCAAATCCCTAGCAGGCACATGACTGCTCTTTGGGAGTAAGAGGCCAACAGTGCTGGACAGTAACCAAGGACCATC----GCTGGCCTGGAGGCAGAGCCTTCAGA---TACCTCCTGCTGGAATGCAACTACGGAGGTCACTGGCAGGACAAGCC-CAGAGCCTGGAATGATTTTGCCAGCTCGTTT-T-AGCCTGATTGTGTGTAATGAGTGGGGGCCTATTGG-----GTGTTTGC--AGAGAGACAGAC-GACATGGAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57771927 810 - 122973662 GGCCTCAG-----CACTGCCTGTGG---GTAGAGGTAGGAGGCCAGGGA-CCTGGTAACCTGACATTTCAAAGT-TG-TGCTCAAACCTTCCCTGTGTTGGGTGGATGGCATTGAGGTTATAAGGGCTCTGGTAGgagct--tgagc-tggctcccaccccagccctgtacttttgagcaagtcacatcaaatctctgagcctagtttcttcctccatgaattgACCATTAAACCACCTGGCACATCACAGACACTCAA-AAAATATGGTAGTATTATCACTGTGGCTGGTCAGCCCAGAAAACCTCAATTT-AAAAAAAATTAGAAGGTTGCATTCAAGCTGTAATGAAGGA---TGTCTGACTCCCAGCTAGGATCCAGAGTAAGCTGATGAAGAAAAGATTAATGAT--------AGCATCAATTGAAGTATCTATTTCCTTTAAAATGCTCACTCTAGAAGACGTACCTACTTTATGGGTTCA-GTCATTCGAGTGTGGCAGTTTGAACAGTAGGCTATATA--TTTTGTAATAAAAGGAGATTTG-TAAGAACTGACTGTCCCTTGAGCCTTGGTGCAT--CATGGGAGATGATTCAAATCCGTAGCAGGCATATGACTGCTCTTTGGGAGGAAGAGGCCAACAGTGCTGGACAGTAACCAAGGAGCATC----GCTGGCCTCGGGGCAGAGCCTTCAGA---TACCTCCTGCTGGAATGCAACTATGGAGGTCACTGGCAGGACAAGCC-CGGAGCCTGGAATGATTTTGCCAGCTCGTTT-T-AGCCTGATTGTGTGTAATGAGTGGGGGCCTGTTGA-----GTGTATGC----AGAGAGAGAC-GACATGGAAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79704839 820 + 112192347 ggcCTCAG-----CACTGCCTGTGG---GTAGAGGTAGGAGGCCAGGGA-CCTGGGAACTGGACATTTCAAATT-TC-TGCTC--AACTTTCCCGTGTTGGGTGGATGGCATCAAGGTTATAAGGGCTTTGTTAGGAGCT--AGAGC-TGGCTCCTACCCCAGCCCtgtactttcgagcaagtcacatcaagtctctgagcctagtttcttcctccacgaattgaCCATGGAACCACCTGGCACATTACAGACACTCAACAAAACATGGTAGTATTATCACTGTGACTGGTCAGCCCAGAAAACCTCAATTTAAAAAAAAATTGGAAGATTGCATTCAAGCTGTAATGAAGGA---TGTCTGACTCCCAGCTAGGATCCGGAGTAATCTGATGAAGAAAAGATTAATGGTAGAGAGAAAGCATCCACTGAAGTATCTATTTCCTTTAAAATGCTCACTCTAGAAGATGTACCTACTTTATGGGTTCA-GTCATTTGAGTGTGGCAATTTGAACAGTGGGCTATATA--TTTTGTAATAAAAGGAGATTTG-TAAGGACTGACTACCCCTTGGGCCTTGGTGCCT--CATGGGAGATGATCCAAATCTGTAGCAGGCACATGACTACTCTTTGGGAGTAAGAGGCCAACAGGGCTGGACAGTAACCAAGGACCATC----GCTGGCCTCGGGGCAAAGCCTTCAGA---TATGTCCTGCTGGAATACAACTACGGAGGTCACTGGCAGGACAAGCC-CAGAGCCTGGAATGATTTTACCAGCTCGTTT-T-AGCCTGATTGTGTGTAATGAGTGGGGGCCTGTTGG-----GTGTATGC--AGAGAGAGAGAT-GACACAGAAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80785682 819 + 112612857 ggcCTCAG-----CACTGCCTGTGG---GTAGAGGTAGGAGGCCAGGGA-CCTGGGAACTGGACATTTCAAATT-TC-TGCTC--AACTTTCCCGTGTTGGGTGGATGGCATCAAGGTTGTAAGGGCTTTGGTAGGAGCT--AGAGc-tggctcctaccccagccctgtacttttgagcaagtcacatcaagtctctgagcctagtttcttcctccacgaattgaCCATGGAACCACCTGGCACATTACAGACACTCAACAAAACATGGTAGTATTATCACTGTGACTGGTCAGCCCAGAAAACCTCAATTT-AAAAAAAATTGGAAGATTGCATTCAAGCTGTAATGAAGGA---TGTCTCACTCCCAGCTAGGATCCGGAGTGATCTGATGAAGAAAAGATTAATGGTAGAGAGAAAGCATCCACTGAAGTATCTATTTCCTTTAAAATGCTCACTCTAGAAGATGTACCTACTTTATGGGTTCA-GTCATTTGAGTGTGGCAATTTGAACAGTGGGCTATATA--TTTTGTAATAAAAGGAGATTTG-TAAGGACTGACTACCCCTTGGGCCTTGGTGCCT--CATGGGAGATGATCCAAATCTGTAGCAGGCACATGACTACTCTTTGGGAGTAAGAGGCCAACAGGGCTGGACAGTAACCAAGGACCATC----GCTGGCCTCGGGGCAAAGCCTTCAGA---TATGTCCTGCTGGAATACAACTACGGAGGTCACTGGCAGGACAAGCC-CAGAGCCTGGAATGATTTTACCAGCTCGTTT-T-TGCCTGATTGTGTGTAATGAGTGGGGGCCTGTTGG-----GTGTATGC--AGAGAGAGAGAT-GACACAGAAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76834454 818 + 107442819 GGCCTCAG-----CACTGCCTGTGG---GTAGAGGTAGGAGGCCAGGGA-CCTGGGAACTGGACATTTCAAATT-TC-TGCTC--AACTTTCCCGTGTTGGGT-GATGGCATCAAGGTTATAAGGGCTTTGGTAGGAGCT--AGAGC-TGGCTCCTACCCCAGCCCTGTACTTTTGAGCAAGTCACATCAAGTCTCTGAGCCTAGTTTCTTCCTCCACGAATTGACCATGGAACCACCTGGCACATTACAGACACTCAACAAAACATGGTAGTATTATCACTGTGACTGGTCAGCCCAGaaaacctcaatttaaaaaaaaattggaagattGCATTCAAGCTGTAATGAAGGA---TGTCTGACTCCCAGCTAGGATCCGGAGTAATCTGATGAAGAAAAGATTAATGGTAGAGAGAAAGCATCCACTGAGGTAtctatttcctttaaaatgctCACTCTAGAAGATGTACCTACTTTATGGGTTCA-GTCATTTGAGTGTGGCAATTTGAACAGTGGgctatata--ttttgtaataaaaggAGATTTG-TAAGGACTGACTACCCCTTGGGCCTTGGTGCCT--CATGGGAGATGATCCAAATCTGTAGCAGGCACATGACTACTCTTTGGGAGTAAGAGGCCAACAGGGCTGGACAGTAACCAA-GACCATC----GCTGGCCTCGGGGCAAAGCCTTCAGA---TATATCCTGCTGGAATACAACTACGGAGGTCACTGGCAGGACAAGCC-CAGAGCCTGGAATGATTTTACCAGCTCGTTT-T-AGCCTGATTGTGTGTAATGAGTGGGGGCCTGTTGG-----GTATatgc--agagagagagat-gacACAGAAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81098350 819 + 108555830 ggcCTCAG-----CACTGCCTGTGC---GTAGAAGTAGGAGGCCAGGGA-CCTGGGAACTGGACATTTCAAATT-TC-TGCTCA-AACTTTCCCTTGTTGGGT-GATGGCATCAAGGTTATAAGGGCTTTGGTAGGAGct--agagc-tggctcccaccccagccctgtacttttgagcaagtcacatcaagtctctgagtctagtttcttcctccacgaattgaCCATGGAACCACCTGGCACATTACAGACACTCAACAAAACGTGGTAGTATTATCACTGTGACTGGTCAGCCCAGGAAACCTCAATTT-AAAAAAAATTGGAAGGTCGCATTCAAGCTGTAATGAAGGA---TGTCTGACTCCCAGCTAGGATCCGGAGTAATCTGATGACGAAAAGATTAATGGTAGAGAGAAAGCATCCATTGAACTATCTATTTCCTTTAAAATGCTAACTCTAGAAGATGTATCTACTTTATGGGTTCA-GTCATTTGAGTGTGGCAATTTGAACAGTGGGCTATATA--TTTTGTAATAAAAGGAGATTTC-TAAGGACTGACTGCCCCTTGGGCCTTGGTGCGT--CATGGGAGATGATTCAAATCCGTAGCAGGCACATGACTGCTCTTTGGGAGTAAGAGGCCAACAGGGCTGGACAGTACCCAAGGACCATC----ACTGGCCTCGGGGCAAAGCCTTCAGA---TACGTCTTGCTGGAATACAACTACGGAGGTCACTGGCAGGACAAGCC-CAGAGCCTGGAATGATTTTACCAGCTCATTT-T-AGCCTGATTGTGTGTAATGAGTGGGGGCCTGTTGG-----GCGTATGC--AGAGAGAGAGAT-GACATGGAAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111318126 817 - 210400635 ggcCTCAG-----CACTGCCTGTGG---ATAGAGGTAGGAGGCTGGGCA-TCTGGGAACCGGACCTTTCAAAGTGTC-TGCTCAGAGCTTCCCTGTGTTGGGTGGATGGCATCGAGGTTATGAGGGTGTTGGTAGGAGCT--AGAGc-tggctcccatcccagccctgtactttagagcaagtcacatgaattctctaagcctagtttcttcctccatgaattgaccacaaaaccacctggcacatcacagACACTCAACAGAATATGGTAGTATTATCACTGTGACTGGTCAGCTCAGAAAACCTCAATTT-AAAAAAAATCAGAAGGTTGCACTGAAGCTGTAATGAAAGC---TATCTGATTCCC----AGGATCCGGAGTAAGCCGATGAAGAAAAGATTAATGTTAGAGAGCGAGCATCCATTTAAGTGTCTATTTCTTTTAAAATGCTCACTCTAGAAGACGTACCTACTTTATGGTTTCA-GTCGTTGGTGTGTGGCAATTTGAACAGTGGGTTATATA--TTTTGTAATAAAAGGAGATTTG-TAAGGACTGACTGCCCCTTGGGCCTCAGTGCAT--CATGGGAGATGATTCAGTTCTGTAGCAGGCACATGACTTCTCTTTGGGAGTGAAAGGCCAACAGTGCTGGACAGTAACCAAGGACCATC----TCTGGCCTC-AGGCAGAGTCTTCAGA---TACCTCCTGCTGGAATGCAACAATGGAGGTCACTGGCAGGACAAGCC-CAGAGCCTGAATGATTTTTACCAACTTGTTT-T-AGCCTGATTGTGTGTAATGAGTGGGTGTCTGTTGG-----GTGTATGC--AGAGAGAGAGAT-GGCATGGAAG i calJac3.chr1 C 0 C 0 s mm10.chr19 37973246 809 - 61431566 ggactcaggtctccactaggtgtaacttgtggagaAAGGA--CTGGAGAGTCTGAGAAGGTGGCATGTCAAAGT-TCATGTTCA-AGCCTGCCTGGGGTTAGAGGATGGCTTGGAGGGGGT--GGACTTTGGTGGTAGCTGATGAGA--AGTTCACGTCCCAGTCTTGTGCTTTTAGGCAAGTCAT-TCAATTCATGGAACTGAGTTTGTACCTCTATTAATTGATCTT---ATTGCCTGGCCTGCTACCCAGTCCCTAGAAAA---GGCAGTGTTTTCACTTTGACCTATTAGCCAGG--------AGTTT-AGATTAAACAAACAAAAAGCAGTCA-----TAATGAAGGATGTTGTCTGGTGACAAGCTGGAATCTGGAGTAAGCTGACAGAGAAAAGATGAGTGGCAAGAGTGGAGCATCTGTT-AAGGATCGGTTTCCTTT-AAATGTTCCCT-TAGTAGAAACTTCTACTTCGAGCATCCAGGTCCTGTGAATGGGGCAGCTTGGACAGTGGACTATATATGTTCTGTAATAAGAGGATATTTG-TAAGAACTGACTGGCC--TGGGTCTCCTTCCCTGCAATGATTCATGATTCAGACCTGCAGCAGGCACATGTTAGCCC--CGGGGGTGAGAGGAAGCTGGAACTGGGCAGTAACCAAGAGACACT----GCTGGCCCCAGGGCAGAGCCCACAGACGGCACCTCCTGCTGGAATGCAAC---AGAGGTCGCTGGCAGGACAAACC-AGGAGCTTGGAATTGTTTT--CAGCACATTTCC-AACCTGACAGTGTGTAATGAGTGGAGGGAC-TTGG-----ATGCATGTGCCAAGagacagacagacagacaga i mm10.chr19 I 258 C 0 s canFam3.chr1 35220968 778 - 122678785 GGCCTTGG-----GCCAGCCTAGGG---GTATGGGAAAGAGGTGTGGGG-TCTGAGAACAGGACATGGCACAGTGGT-TGCCCAAACCT--------------GGAC-------AAGTCAAGAGAGCTTTGGTGGTAGCT--AGAGCAGGGTTCACAGCCCTGCCCCGT----------AGGTCACTTAAACTCTTTGGGTCTAGTTTCTTCCCCTA--AATTGACCATGAAACCACCTGGCATATCACAAACACTAAATAAAAAGTGGTAGTGTTTTCACTGTGATGACTCAGCCCTGCAAACTTCGACTT-AAAAAAATTCAAAAGATTGCCATCAAACCATAGTGAAGGA---TATCTGACTCCAAGCTATGGTTCAGAGTAAACTGATGGAACAAAGATTAATGTT------------CCCTATGA----TCTATTCCCTTTTAAATGCCCACTGTAAAGGAAATGTCTACTTTACCAGTTCA-----TTTGAGTGTGGCAATTTGAATAGCAGGGCATAGA--TTTTGTAACAGCAGGAGATCTGTTAAGAACTGGTTAACC-TTGGGCCTTGGGCCCT--CACGGTGGATGAGTCAGACTTGCAGCAGGCACGTGACTGTCCCCAAGGGGTAAGAGGCAGCTGGTGCTGGTCAGGAACCAAGGGACACTGCCAGCCAGCCTTGGGGCAGAGCCCCCAGA---CACCTCCTGCAGGAATGCAAT---GAAGGTCACTGACAGGATAAGCCATAGAGCCTGGAATTGTTTTACCAGCTCATTT-TCAACCTGAGAGCATGCAGTGAGTGGGGGCACATCGAAGTCTATGTGTGg--agagacaaagag-agcatgaaag i canFam3.chr1 C 0 C 0 a score=35928.000000 s hg38.chr9_GL383541v1_alt 12937 10 + 171286 CAACACAGAC s panTro4.chr9 68578616 10 + 137840987 CAACACAGAC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64732024 10 + 135191526 CAACACAGAC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57772737 10 - 122973662 CAACACAGAC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79705659 10 + 112192347 CAACACAGAC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80786501 10 + 112612857 CAACACAGAC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76835272 10 + 107442819 CAACACAGAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81099169 10 + 108555830 CAACACAGAC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111318943 10 - 210400635 CAACACAGAT i calJac3.chr1 C 0 C 0 s mm10.chr19 37974055 9 - 61431566 cag-acagac i mm10.chr19 C 0 I 379 e canFam3.chr1 35221746 0 - 122678785 C a score=210697.000000 s hg38.chr9_GL383541v1_alt 12947 70 + 171286 CACTGACTGCAGGAGTGCATATTTGGTCTTTT----CTTCTGAATAAAATTAGAATAAAGTTGGTAAAATTCAC s panTro4.chr9 68578626 70 + 137840987 CACTGACTGCAGGAGTGCATATTTGGTCTTTT----CTTCTGAATAAAATTAGAATAAAGTTGGTAAAATTCAC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64732034 70 + 135191526 CACTGACTGCAGGAGTGCATATTCGGTCTTTT----CTTCTGAATAAAATTAGAATAAAGTTGGTAAAATTCAC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57772747 70 - 122973662 CACTGACTGCAGGAGTGCATATTTGGTCTTTT----CTTCTGAATAAAATTAGAATAAAGTTGGTAAAATTCAC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79705669 70 + 112192347 CACTGACTGTCGAAGTGCATATTTGGTCTTTT----CTTCTGAATAAAATTAGAATAAAGTTTGTAAAATTCAC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80786511 70 + 112612857 CACTGACTGTCGGAGTGCATATTTCGTCTTTT----CTTCTGAATAAAATTAGAATAAAGTTTGTAAAATTCAC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76835282 70 + 107442819 CACTGACTGTCGGAATGCATATTTGGTCTTTT----CTTctgaataaaattagaataaagtTTGTAAAATTCAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81099179 70 + 108555830 CACTGACCGTCGGAGTGCATATTTGGTCTTTT----CTTCTGAATAAAATTAGAATAAAGTTCATAAAATTCAC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111318953 74 - 210400635 CACTGACTGTAGAATTGCATATTTGGTCTTTTCCTGCTTCTGAATAAAATTAGAATAAAGTCTGTAAAATTCAC i calJac3.chr1 C 0 C 0 e mm10.chr19 37974064 379 - 61431566 I e canFam3.chr1 35221746 0 - 122678785 C a score=357747.000000 s hg38.chr9_GL383541v1_alt 13017 110 + 171286 ATGA-------------AGATATTTTTAAAAGTTTACTGGAAAACACAAAAATTTATATCAATGGACCAAGGTAAATATATCAATCTTTATAAATCAATGTACACATTTAATGTAATTCCAAT s panTro4.chr9 68578696 109 + 137840987 ATGA-------------AGAT-TTTTTTAAAGTTTACTGGAAAACACAAAAATTTATATCAATGGACCAAGGTAAATATATCAATCTTTATAAATCAATGTACACATTTAATGTAATTCCAAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64732104 110 + 135191526 ATGA-------------AGATATGTTTAAAAGTTTACTGGAAAACACAAAAATTTATATCAATGGACCAAGGTAAATATATCAATCTTCATAAATCAATGTACATATTTAATGTAATTCCAAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57772817 110 - 122973662 ATGA-------------AGGTATGTTTAAGAGTTTACTGGGAAACACAAAAATTTATATCAATGGACCAAGGTAAATATATCAATCTTTATAAATCAATGTATATATTTAATGTAATTCCAAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79705739 107 + 112192347 ---A-------------AGATATGTTTAAAAGTTTACTGGAAAACACAAAAATTTATATCAATGGGCCAAGGTAAATATATCAATATTTATAAATCAATGTACACATTTAATGTAATTCCAAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80786581 107 + 112612857 ---A-------------AGATATGTTTAAAAGTTTACTGGAAAACACAAAAATTTATATCAATGGGCCAAGGTAAATATATCAATATTTATAAATCAATGTACACATTTAATGTAATTCCAAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76835352 107 + 107442819 ---A-------------AGATATGTTTAAAAGTTTactggaaaacacaaaaatttatatCAATGGGCCAAggtaaatatatcaatatttataaatcaatgtacacatttaatgtaattccaAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81099249 107 + 108555830 ---A-------------AGATATGTTTAAAAGTTTACTGGAAAACACAAAAATTTATATCAATGGGCCAAGGTAAATATATCAATATTTATAAATCAATGTACACATTTAATGTAATTCCAAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111319027 123 - 210400635 ATGAATTTTAAACATGTAGATATGTTTAAAAGTTTACTGGAAAACACAAAAATTTATATCAATGGACCAAGATAAATATATCAATCTTTATAAATCAATGAATACATTTAATGTAATTCCAAT i calJac3.chr1 C 0 C 0 s mm10.chr19 37974443 105 - 61431566 ataa-------------aGTATTTTTTTAAAGTT--CTGGAAATCATGAAAATGTA---CACTGGACCAAAGTGAATGCGCCACTCCTTGTCAGTTAGGGTAAAGATTTCCTGTAATTCTAAT i mm10.chr19 I 379 I 2780 e canFam3.chr1 35221746 0 - 122678785 C a score=59074.000000 s hg38.chr9_GL383541v1_alt 13127 21 + 171286 AAACATGTCAAAGATTTTTTT s panTro4.chr9 68578805 21 + 137840987 AAACATGTCAAAGACTTTTTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64732214 21 + 135191526 AAACATGTCAAAGATTTTTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57772927 21 - 122973662 AAACATGTCAAAGATTTTTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79705846 21 + 112192347 AAACAGGTCAAAGATTTTTTA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80786688 21 + 112612857 AAACAGGTCAAAGATTTTTTA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76835459 21 + 107442819 AAACAggtcaaagattttttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81099356 21 + 108555830 AAACAGGTCAAAGATTTTTTT i chlSab2.chr12 C 0 I 7 s calJac3.chr1 111319150 21 - 210400635 AAATATGTCAAAGGTTTTCTT i calJac3.chr1 C 0 C 0 e mm10.chr19 37974548 2780 - 61431566 I e canFam3.chr1 35221746 0 - 122678785 C a score=10519.000000 s hg38.chr9_GL383541v1_alt 13148 5 + 171286 AAAAA s panTro4.chr9 68578826 5 + 137840987 AAAAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64732235 5 + 135191526 AAAAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57772948 5 - 122973662 AAAAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79705867 5 + 112192347 AAAAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80786709 5 + 112612857 AAAAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76835480 5 + 107442819 aagaa i papAnu2.chr15 C 0 C 0 s calJac3.chr1 111319171 5 - 210400635 AATAA i calJac3.chr1 C 0 C 0 e mm10.chr19 37974548 2780 - 61431566 I e chlSab2.chr12 81099377 7 + 108555830 I e canFam3.chr1 35221746 0 - 122678785 C a score=8523.000000 s hg38.chr9_GL383541v1_alt 13153 5 + 171286 CACTG s panTro4.chr9 68578831 5 + 137840987 CACTG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64732240 5 + 135191526 CACTG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57772953 5 - 122973662 CACTG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79705872 5 + 112192347 TACTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80786714 5 + 112612857 TACTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76835485 5 + 107442819 taCTG i papAnu2.chr15 C 0 C 0 e mm10.chr19 37974548 2780 - 61431566 I e chlSab2.chr12 81099377 7 + 108555830 I e canFam3.chr1 35221746 0 - 122678785 C e calJac3.chr1 111319176 0 - 210400635 C a score=131597.000000 s hg38.chr9_GL383541v1_alt 13158 312 + 171286 AGTGTAggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgcatcacgatgtcaggagatcaagaccacagtgaaaccccgtctctactaaaactac-------aaaaaaaaaaaaaaaaaaaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctccgcgggaggctcaggcaggagaacggcggcgtcaacctgggaggcggagcttacagtgagcggagattgtgccaccgcactccagtctgggcgacagagcgagactccgtctcaaaaacaaaaacaaaa s panTro4.chr9 68578836 319 + 137840987 AGTGTAggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgcagcacgatgtcaggagatcaagaccacagtgaaaccccgtctctactaaaactacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctccgcgggaggctgaggcaggagaacggcggcctcaacccgggaggtggagcttacagtgagcggagattgtgccaccgcactccagtctgggcgacagagcgagactccgtctcaaaaacaaaaacaaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64732245 279 + 135191526 AGTGTAggccaggcgctgtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgcatcacaaggtcaggagatcaagaccacagtgaaaccccgtctctactaaaaat--------------------aaaaataaaaaaattagctgggcgcggtggcgggcgcctgtagtcccagctacgcgaga------------------atggcgtcaacccgggaggcggagcttgcagtgagcggagattgcgccaccgcactccagtctaggcgacagagcgagactccgtctcaaaa--aaaaaaaaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57772958 287 - 122973662 AGTGTAggccaggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacaaggtcaggggatcaagaccacagtgaaactccatctctactaaaaatac---------------acacacacaaaaaaaattagctgggcgcggtggcaggcgcctttagtcccagctaggcaggaggctgaggcaggaga---atggcatgaacctgggaggtggagcttgcagtgagcggagattgcgccaccgcactccactctgggcgacaga------------ctcaaaa--aaaaaaaaaa i nomLeu3.chr1a C 0 C 0 e mm10.chr19 37974548 2780 - 61431566 I e chlSab2.chr12 81099377 7 + 108555830 I e canFam3.chr1 35221746 0 - 122678785 C e rheMac3.chr15 79705877 0 + 112192347 C e calJac3.chr1 111319176 0 - 210400635 C e papAnu2.chr15 76835490 0 + 107442819 C e macFas5.chr15 80786719 0 + 112612857 C a score=506.000000 s hg38.chr9_GL383541v1_alt 13470 12 + 171286 caaaaaaaaaaC s panTro4.chr9 68579155 12 + 137840987 caaaaaaaaaaC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64732524 12 + 135191526 CACACACACACA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57773245 5 - 122973662 caaaa------- i nomLeu3.chr1a C 0 C 0 s canFam3.chr1 35221746 12 - 122678785 caagagagaaaa i canFam3.chr1 C 0 C 0 e mm10.chr19 37974548 2780 - 61431566 I e chlSab2.chr12 81099377 7 + 108555830 I e rheMac3.chr15 79705877 0 + 112192347 C e calJac3.chr1 111319176 0 - 210400635 C e papAnu2.chr15 76835490 0 + 107442819 C e macFas5.chr15 80786719 0 + 112612857 C a score=2228.000000 s hg38.chr9_GL383541v1_alt 13482 5 + 171286 CACTC s panTro4.chr9 68579167 5 + 137840987 CACTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64732536 5 + 135191526 CACAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57773250 5 - 122973662 CACTG i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 111319176 5 - 210400635 CACAC i calJac3.chr1 C 0 C 0 s canFam3.chr1 35221758 5 - 122678785 tgctg i canFam3.chr1 C 0 C 0 e mm10.chr19 37974548 2780 - 61431566 I e chlSab2.chr12 81099377 7 + 108555830 I e rheMac3.chr15 79705877 0 + 112192347 C e papAnu2.chr15 76835490 0 + 107442819 C e macFas5.chr15 80786719 0 + 112612857 C a score=169499.000000 s hg38.chr9_GL383541v1_alt 13487 54 + 171286 AGTGTAGAGTGACAGAGATAGAGGTGAGCCCATACAAAGTACAT----------------------------CAGACAGTGA s panTro4.chr9 68579172 54 + 137840987 AGTGTAGAGTGACAGAGATAGAGGTGAGCCCATACAAAGTACAT----------------------------TAGACAGTGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64732541 54 + 135191526 AGTGTAGagtgacagagatagaggtgagcccatacaaagtacat----------------------------cagacagtga i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57773255 54 - 122973662 AGTGTAGAGTGACAGAGATAGAGGTGAGCTCATGCAAAGTACAT----------------------------Cagacagtga i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79705877 54 + 112192347 AGTGTAGAGTGACAGAGATAGAGGTGAGCCCATATAAAGTACAT----------------------------Cagacagaga i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80786719 54 + 112612857 AGTGTAGagtgacagagatagaggtgagcccatataaagtacat----------------------------cagacagaga i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76835490 54 + 107442819 AGTGTAGAGTGACAGAGATAGAGGTGAGCCCATATAAAGTACat----------------------------cagacagaga i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81099384 54 + 108555830 AGTGTAGAGTGACAGAGATAGAGGTGAGCCCACACAAAGTACAT----------------------------CAGACagaga i chlSab2.chr12 I 7 C 0 s calJac3.chr1 111319181 54 - 210400635 AGTGTAGATTGACAGATAAAGAGGTGAACCCATACAAAGTGCAT----------------------------CAGACAGTGA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35221763 70 - 122678785 agta---------agaggcagaggggagccc---cagagggcatcacagagatccagagagagacacacagacagacaggga i canFam3.chr1 C 0 C 0 e mm10.chr19 37974548 2780 - 61431566 I a score=1228770.000000 s hg38.chr9_GL383541v1_alt 13541 383 + 171286 GAGAGAAAGGCAGA-------------------A-------ACAAAGACAAAAATC-----CAGAGACAATGACTTGGCATAGATTAAAGGAGACCCAGGTATTAAGA--------AA---------AACAGATTATATATATG-------AGATAAATG------------------------AGAATGCAA-------CAAGGTATAATAACTACAAAAGATGTTACTAATTTTATTATTAATTACCTTACATCTGTGCAAGACCTAGAATATACAAAGTCCTTTCCATGTTTCCAAATACTGGCCAACTAGGAGGTGAGATAATTAATGGCTTCTCATCCCACCACTG--CCCTAGAGACATACAGCCTTGGTTAAAAGTCACCTAGACTTTTTCTGCCTCCATTTGCTCTACTGTAGAATGGCATTGCTCCCGTGTGCCTGGCTACCTCCTCTGGAGGAGTGAGGAG s panTro4.chr9 68579226 383 + 137840987 GAGAGAAAGGCAGA-------------------A-------ACAAAGACAAAAATC-----CAGAGACAATGACTTGGCATAGATTAAAGGAGACCCAGGTATTAAGA--------AA---------AACAGATTATATATATG-------AGATAAATG------------------------AGAATGCAA-------CAAGGTATAATAACTACAAAAGATGTTACTAATTTTATTATTAATTACCTTACATCTGTGCAAGACCTAGAATATACAAAGTCCTTTCCATGTTTCCAAATGTTGGCCAACTAGGAGGTGAGATAATTAATGGCTTCTCATCCCACCACTG--CCCTAGAGACATACAGCCTTGGTTAAAAGTCACCTAGACTTTTTCTGCCTCCATTTGCTCTACTGTAGAATGGCATTGCTCCCGTGTGCCTGGCTACCTCCTCTGGAGGAGTGAGGAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64732595 381 + 135191526 gagacaaaggcaga-------------------a-------acaaagacaaaaatc-----cagagacaATGGCTTGGCATTGATTAAAGGAGACCCAGGTATTAAGA--------AA---------AACAGATTATATATATG-------AGATAAATG------------------------AGAATGCAA-------CAAGGTATAATAACTACAAAAGATGTTACTAATTTTATTATTAATTACCTTACATCTGTGCAAGACCTAGAATATACGAAGTTCTTTCCATGTTTCCAAATACTGGCCAACTAGGAGGTGAGATAATTAAtggcttctcatcccaccactg--ccctagagacatacagccttggtt--aagtcacctagactttttctgcctccgttttctctactgtagaatggCACTGCTCCCGTGTGCCTGGCTACCTCCTCTGGAGGAGTGAGCAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57773309 387 - 122973662 gagagaaaggcagaaacaaag------------a-------acaaagacaaaaaTC-----CAGAGACAATGGCTTGGCATAGATTAAAGGAGACCCAGGTATTAAGA--------AA---------AACAGATTATACATATG-------AGATAAATG------------------------AGAATGCAA-------CAAGGTATAATAACTACAAAAGATGTTACTAATTTTATTATTAATTACCTTACATCTGTGCAAAACCTAGAATATACAAAGTCCTTTCCATGTTTCCAAATACTGGCCAACT---AGGTGAGATAATTAATGACTTCTCATCCCACCCCTG--CCCTAGAGACATACAGCCTTGGTTAAAAGTCACCTAGACTTTTTCTGCCTCCATTTTCTCTACTGTAGAATGGCACTGCTCCCGTGTGCCTGGCTACCTCCTCTGGAGGAGTGAGCAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79705931 399 + 112192347 cagagagagagagagaaagagagaggg------agaAACACACAAAGACAAAAATC-----CAGAGACAATGGCTTGGCATAGATTAAAGGAGACCCAGGTATGAAGA--------AA---------AACAGATTACATATATG-------AGATAAATG------------------------AGAACGCAG-------CAAGATATAATAACTACAAAAGATGTTACCAATTGTATTATTAA-----TTACATCTGTGCAAGACCTAGAACATGTGAAGTCCTTTCCGTGTTTCCAAATACTGGCCAACTAGGAGGTGAGCTAATTAAtggcttctcatcccatccctgacacttagagacatacagccttggttaaaagtcacctagacctttt-tgcctccattttctctactgtagaatgggactgctcctgtgtgcctggctacctcCTCTGGAGGAGTGAGCAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80786773 399 + 112612857 cagagagagagagagaaagagagaggg------agaaacacacaaagacaaaaatc-----cagagacaATGGCTTGGCATAGATTAAAGGAGACCCAGGTATGAAGA--------AA---------AACAGGTTACATATATG-------AGATAAATG------------------------AGAACGCAA-------CAAGATATAATAACTACAAAAGATGTTACCAATTGTATTATTAA-----TTACATCTGTGCAAGACCTAGAACATGTGAAGTCCTTTCCATGTTTCCAAATACTGGCCAACTAGGAGGTGAGCTAATTAAtggcttctcatcccatccctgacacttagagacatacagccttggttaaaagtcacctagacctttt-tgcctccattttctctactgtagaatgggactgctcctgtgtgcctggctacctcCTCTGGAGGAGTGAGCAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76835544 399 + 107442819 cagagagagagagagaaagagagaggg------agaaacacacaaagacaaaaatc-----cagagacaATGGCTTGGCATAGATTAAAGGAGACCCAGGTATGAAGA--------AA---------AACAGATTACGTATATG-------AGATAAATG------------------------AGAACGCAA-------CAAGATATAATAACTACAAAAGATGTTACCAATTGTATTATTAA-----TTACATCTGTGCAAGACCTAGAACCTATGAAGTCCTTTCCATGTTTCCAAATACTGGCCAACTAGGAGGTGAGCTAATTAATGGCTTCTCATCCCATCCCTGACACTTAGAGACATACAGCCTTGGTTAAAAGTCACCTAGACCTTTT-TGCCTCCATTTTCTCTACTGTAGAATGGGACTGCTCCTGTGTGCCTGGCTACCTCCTCTGGAGGAGTGAGCAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81099438 410 + 108555830 gagagagagagagagagagagagagagagagGCAGAAACACACAAAGACAAAAATC-----CAGAGACAATGGCTTGGCATAGATTAAAGGAGACCCAGGTATGAAGA--------AA---------AACAGATTACATATATG-------AGATAAATG------------------------AGAACGCAA-------CAAGATATAACAACTACAAAAGATGTTACCAATTGTATTATTAATTACCTTACATCTGTGCCAGACCTAGAACACATGAAGTCCTTTCCATGTTTCCAAATACTGGCCAACTAGGAGGTGAGCTAATTAAtggcttctcatcccatccctgacacttagagacatacagccttggttaaaagtcacctagacttttt-tgcctccattttctctactgtagaatgggactgctgctgtgtgcctggctatctcCTCTGGAGGAGTGAGCAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111319235 381 - 210400635 GAGAAAGAGAGGC--------------------AGAAACATGCAAAGACAAAAAGC-----CAGAGACAATGACTTAGCATAGATTA---GAGATCCAGGTATGAAGA--------AA---------AACAGATTATACATATG-------AGATATGTG------------------------AGAATATAA-------CAAGGTAT---AACTACAATTGATATTACTAATTTTATTATTTA----CTTACATCTGTGTAAGACCTAGAATATACAAAGTCCTTTCCATGTTTCCAAATACTGGCCAACTAGGAGGTGAGCTAATTAATGGCTTCTCATCCCATCCCTGCCACTTAGAGACATGCAGCCCTGGTTAAAAGTCGCCTAGATCTTTTCTGTCTCCATTTTCTATACTGTAGAATGGAAGTCCTCCTGTGTGCCCGACTACCTCCTCTGGATGAGTGAGCAG i calJac3.chr1 C 0 C 0 s mm10.chr19 37977328 349 - 61431566 GAGAGATGAATAGAAAC----------------GGAAATGATGAGAGATGAAACTC-----CAAACACAATGTCTTGACATATATCAAAGGAGACCTAGGAGAGAAAATGTATATCAA---------TATTTTTCAAAAATACT-------TAACACAAG------------------------AGAATGCAAT------TAATGCATGATGAGCACTGTGTGTCTGACTGCTGTAGTTGTTAG-----------------------------------AGTCCTTTCTGCATATCCAGTTACTGGCTAGGTAGGAGGCAACC----CAATAGCTTCTTGTC-----------ACTTGAAGGAATGTGTTTTTGG-GAGAAGTTATA-AGACTCTCTTTGCTTCAACTTTCTCTACTATGGA--GGGACTGACCATGTATG-CTGGCTACATACTCAAGCAGGGTGAGCAG i mm10.chr19 I 2780 I 1411 s canFam3.chr1 35221833 423 - 122678785 caaagaaagatggaa------------------ataagcagaaagagacaaaactccagagcagagacaATGTCTTGGTGTAGATCAGAGGGGACCCAGGAAGCAAGA--------AAGGGAGAAAGAAAAAAatatatatatatacatacatatatatgtatatatataATTTTAAAACATATAGTATGTAATAGAAAGCAAAGTATAATTACTATGAAGGATATTATGAATAGCCTTATT-----------ATTTGCCCAAGACCTAAAGCATACAAAGTCCTGTCTGTGGACCCAAATCCTGGCCAGTGAGGAAGTGAGC----TTATGACTTCCCAtcttgtccctaccacttagagacatgtgaccttggagaaaggtcagttagactctttttttctctattttctcta-----gactgggactggttacctgtgtctggccaccccttctggaagggtggtg-- i canFam3.chr1 C 0 C 0 a score=433908.000000 s hg38.chr9_GL383541v1_alt 13924 131 + 171286 -GGAGTCACCCTACTCTCTGTCTCCGTGGTTCTATCATAATGCTGCAAACTTCAGCTCAAGAATTGA-------ATTTAACCT---CCCAATAGATTTTGTTCTAC-CCCATGGGGATTTGAGTATAT--TGTTTTAATTTCTtg s panTro4.chr9 68579609 131 + 137840987 -GGAGTCACCCTACTCTCTGTCTCCGTGGTTCTATCATAATGCTGCAAACTTCAGCTCAAGAATTGA-------ATTTAACCT---CCCAATAGATTTTGTTCTAC-CCCATGGGGATTTGAGTATAT--TGTTTTAATTTCTtg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64732976 122 + 135191526 -TGAGGCACCCTA----CTGTCTC-----TACTATCATAATGCTgcaaacttcagctcaagaattga-------atttaacct---cccaacagattttgttctac-cccatggggatttgagtatat--tgttttaatttcttg i ponAbe2.chr9 C 0 I 1 s nomLeu3.chr1a 57773696 130 - 122973662 -TGAG-CACCCTACTCTCTGTCTCCGTGGTTCTATCATAAGGCTGCAAACTTCAGCTCAAGAATTGA-------ATTTAACCT---CCCAACAGAttttgttctac-cacatggggatttgagtatat--tgttttaatttcttg i nomLeu3.chr1a C 0 I 1 s rheMac3.chr15 79706330 131 + 112192347 -TGAGGCACCCTACTCTCTGTCTCCATGGTTCTATCATAATGCTgcaaacttcagctcaagaattga-------atttaacct---cccaacaggttttgttctac-cccacagagatttgagtatat--tgttttagtttcttg i rheMac3.chr15 C 0 I 1 s macFas5.chr15 80787172 131 + 112612857 -TGAGGCACCCTACTCTCTGTCTCCATGGTTCTATCATAATGCTGCAAACTTCAGCTCAAGAATTGA-------ATTTAACCT---CCCAACAGGTTTTGTTCTAC-CCCACAGAGATTTGAGTATAT--TGTTTTAGTTTCTTG i macFas5.chr15 C 0 I 1 s papAnu2.chr15 76835943 131 + 107442819 -TGAGGCAccctactctctgtctccatggttCTATCATAATGCTGCAAACTTCAGCTCAAGAATTGA-------ATTTAACCT---CCCAACAGGTTTTGTTCTAC-CCCACAGAGATTTGagtatat--tgttttaatttcttg i papAnu2.chr15 C 0 I 1 s chlSab2.chr12 81099848 131 + 108555830 -TGAGGCACCCTACTCTCTGTCTCCATGGTTCTATCATAATGCTGCAAACTTCAGCTCAAGAATTGA-------ATTTAACCT---CCCAACAGGTTTTGTTCTAC-CCCACAGGGATTTGAGTATAT--TGTTTTAATTTCTTG i chlSab2.chr12 C 0 I 1 s calJac3.chr1 111319616 130 - 210400635 -TGAGGCACTC-ACTCTCTGTCTCCATGGTTCTATCATAGTGCTGCAAATTTCAGCTCAATAATTGA-------ATTTAACAT---CCCAACAGATTTTGTTCTAC-CCCACAGAGATTTAAGTATAT--GGTTTTAATTTCTTG i calJac3.chr1 C 0 I 1 s canFam3.chr1 35222256 144 - 122678785 gtgag-catcCCATTCTCTGTCTCCGTGGTTCTATCTTGGTGCTATAAATGGCAGTTCAAGAATTGATTATAGGTTTTAGTCTACGCCCCTCAGgttttagtctatgcccacagagatttaaatatgttctgttttaattcattg i canFam3.chr1 C 0 I 3 e mm10.chr19 37977677 1411 - 61431566 I a score=10286.000000 s hg38.chr9_GL383541v1_alt 14055 125 + 171286 gaatggaatggaattgaatggaatgcaatagaatggaatggaatcaactc-----gagtggaatggaatggaatggaatggaatggaatggaatggaatggaatggaatgcaagagaatggaatggaatc s panTro4.chr9 68579740 130 + 137840987 gaatggaatggaattgaatggaatgcaagagaatggaatggaatcaactctagtggaatggaatggaatggaatggaatggaatggaatggaatggaatggaatggaatgcaatagaatggcatggaatg i panTro4.chr9 C 0 C 0 e mm10.chr19 37977677 1411 - 61431566 I e chlSab2.chr12 81099979 1 + 108555830 I e canFam3.chr1 35222400 3 - 122678785 I e ponAbe2.chr9 64733098 1 + 135191526 I e rheMac3.chr15 79706461 1 + 112192347 I e calJac3.chr1 111319746 1 - 210400635 I e papAnu2.chr15 76836074 1 + 107442819 I e macFas5.chr15 80787303 1 + 112612857 I e nomLeu3.chr1a 57773826 1 - 122973662 I a score=0.000000 s hg38.chr9_GL383541v1_alt 14180 160 + 171286 aactctagtggcatggaatggaatggaatggaatggaatggaatggaatggaatggaatggaatggaatggaatgcaatagaatggaatggaatcaactcgagaggaatggaatggaatggaatggaatggaatggaatggaatggaatggaatggaatg e mm10.chr19 37977677 1411 - 61431566 I e chlSab2.chr12 81099979 1 + 108555830 I e canFam3.chr1 35222400 3 - 122678785 I e ponAbe2.chr9 64733098 1 + 135191526 I e rheMac3.chr15 79706461 1 + 112192347 I e calJac3.chr1 111319746 1 - 210400635 I e papAnu2.chr15 76836074 1 + 107442819 I e macFas5.chr15 80787303 1 + 112612857 I e nomLeu3.chr1a 57773826 1 - 122973662 I e panTro4.chr9 68579870 0 + 137840987 C a score=14657.000000 s hg38.chr9_GL383541v1_alt 14340 183 + 171286 gaatggagtggaaaggaatggaatgcatttaaactgaatggatccgaaaagaatggattggaatggaatggaatgaagtggccttgaatgcaatagaatggaatggaatcaacatgagtggattggaatggaaaggaatggaatggaatgcaacggaatggaatggaatggaatggaatggaa s panTro4.chr9 68579870 168 + 137840987 gaatggagtggaaaggaatggaatgcatttaaactgaatggatctgaaaagaatggattggaatggaatggaatgaagtggccttgaatgcaatagaatggaatggaatcaacatgagtggattggaatggaaaggaatggaatggagtg---------------gagtggaatggaatggaa i panTro4.chr9 C 0 C 0 e mm10.chr19 37977677 1411 - 61431566 I e chlSab2.chr12 81099979 1 + 108555830 I e canFam3.chr1 35222400 3 - 122678785 I e ponAbe2.chr9 64733098 1 + 135191526 I e rheMac3.chr15 79706461 1 + 112192347 I e calJac3.chr1 111319746 1 - 210400635 I e papAnu2.chr15 76836074 1 + 107442819 I e macFas5.chr15 80787303 1 + 112612857 I e nomLeu3.chr1a 57773826 1 - 122973662 I a score=6876.000000 s hg38.chr9_GL383541v1_alt 14523 2 + 171286 tg s panTro4.chr9 68580038 2 + 137840987 tg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64733099 2 + 135191526 tg i ponAbe2.chr9 I 1 C 0 s nomLeu3.chr1a 57773827 2 - 122973662 tg i nomLeu3.chr1a I 1 C 0 s rheMac3.chr15 79706462 2 + 112192347 tg i rheMac3.chr15 I 1 C 0 s macFas5.chr15 80787304 2 + 112612857 TG i macFas5.chr15 I 1 C 0 s papAnu2.chr15 76836075 2 + 107442819 tg i papAnu2.chr15 I 1 C 0 s chlSab2.chr12 81099980 2 + 108555830 TG i chlSab2.chr12 I 1 C 0 s calJac3.chr1 111319747 2 - 210400635 TG i calJac3.chr1 I 1 C 0 e mm10.chr19 37977677 1411 - 61431566 I e canFam3.chr1 35222400 3 - 122678785 I a score=1380356.000000 s hg38.chr9_GL383541v1_alt 14525 422 + 171286 gcatctgaaaatcaggagttgttatatacatatctgaatattgggcttcttttg--aaacatgagcagTTGGGGTAGAGATGG-------------TTTCTGTAATGccctttagttggacttacttactccagttaaccacagtctccatccctccctatttcttccgtgttaccagatcactccattcatttacgtgacttccttggcctctAGACTTTTTATATTTGCAGCCTTAATTCTATCTCATCCACATATTTTATTGAAATTATTGTCTCATGGGTCAGTCTCCTGTCTCAGCAGCAGAggatgtgtcttcttgacccctggatttccagcccctagcatagtgtctggctcacagtaggtgctcaggaaatgtttgctgaGCTTATCATGGCATGACACTGCGTGAGACTAAC----AAGGAGAGAAAGAAA s panTro4.chr9 68580040 422 + 137840987 gcatctgaaaatcaggagctgttatatacatatctgaatattgggcttcttttg--aaacatgagcagTTGGGGTAGAGATGG-------------TTTCTGTAATGccctttagttgggcttacttactccagttaaccacagtctccatccctccctatttcttccgtgttaccagatcactccattcatttacgtgacttccttggcctctAGACTTTTTATATTTGCAGCCTTTATTCTATCTCATCTACATATTTTATTGAAATTATTGTCTCATGGGTCAGTCTCCTGTCTCAGCAGCAGAggatgtgtcttcttgacccctggatttccagcccctagcatagtgtctggctcacagtaggtgctcaggaaatgtttgctgaGCTTATCATGGCATGACACTGCGTGAGACTAAC----AAGGAGAGAAAGAAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64733101 422 + 135191526 gcatctgaaaatcaggagctgttatatacatatctgaatactgggcttcttttg--aaacatgagCGGTTGGGGTAGAGATGG-------------TTTCTGTAATGccctttagttgggctggcttactccatttcaccacagtctccatccctccctatttcttccgtgttaccagatcactccattcatttacgtgacttccttggcctctAGACTTTTTATATTTGCAGCCTTTCTTCTCTCTCATCCACATATTTTATTGAAATTATTGTCTCACGGGTCAGTCTCCTGTCTCAGCAGCAGAggatgtgtcttcttaacccctggatttccagcccctagcataatgtctggctcacagtaggtgctcaggaaatgtttgctgagtTTATCATGGCATGACACTGCATGAGACTAAC----AAGGAGAGAAAGAAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57773829 420 - 122973662 gcatctgaaagtcaggagctgttatatacatatctgaatattgggcttcttttg--aaacatgagcagTTGGGGT--AGATGG-------------TTTCTGTAATGccctttagttgggcttacttactccagttaaccagagtctccatccctccctatttcttccgtgttaccagatcacaccattcatttatgtgacttccttggcctctAGACTTTTTATATTTACAGGCTTTATTCTATCTCATCCACGTATTTTATTGAAATTATTGTCTCACGGGTCAGTCTCATGTCTCAGCAGCAGAggatgtgtcttcttgacccctggatttccagcccctagcatagtgcctggctcacagtaggtactcaggaaatgtttgctgaGCTTATCATGGCATGACACTGCGTGAGACTAAC----AAGGAGAGAAAGAAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79706464 426 + 112192347 gcatctgagactcaggagctgttatagacatatctgaatattgggctgcttttg--aaacatgagcagatGGGGTAGAGATGG-------------TTTCTGTAATAccctttagttgggcttacttaccccagttaaccacagtctccatccctccctatttcttccctgtaaccagatcactccattcatttatgtgacttccttggcctctAGACTTTTTATATTTACAGTCTTTATTCTATCTCATCCACATATTTTATTGAAATTATTGTCCCATGGGTCAGTCTCCTGTCTCAGCAGCAGAGGACGtgtcttcttgacctctggatttccagcccctagcatagtgcctggctcacagtaggtgctcaggaaatatttgctgaGCTTATCATAGCATGACACTGTGTGAGAATAACAAGTAAGGAGAGAGAGCAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80787306 426 + 112612857 GCATCTGAGACTCAGGAGCTGTTATAGACATATCTGAATATTGGGCTGCTTTTG--AAACATGAGCAGATGGGGTAGAGATGG-------------TTTCTGTAATAccctttagttgggcttacttaccccagttaaccacagtctccatccctccctatttcttccctgtaaccagatcattccattcatttatgtgacttccttggcctctAGACTTTTTATATTTACAGTCTTTATTCTATCTCATCCACATATTTTATTGAAATTATTGTCCCATGGGTCAGTCTCCTGTCTCAGCAgcagaggacgtgtcttcttgacctctggatttccagcccctagcatagtgcctggctcacagtaggtgctcaggaaatatttgctgaGCTTATCATAGCATGACACTGTGTGAGAATAACAAGTAAGGAGAGAGAGCAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76836077 426 + 107442819 gCGTCTGAGACTCAGGAGCTGTTATAGACATATCTGAATATTGGGCTTCTTTTG--AAACATGAGCAGATGGGGTAGAGATGG-------------TTTCTGTAATACCCTTTAGTTGGGCTTACTTACCCTAGTTAACCACAGTCTCCATCCCTCCCTATTTCTTCCCTGTAACCAGATCACTCCATTCATTTATGTGACTTCCTTGGCCTCTAGACTTTTTATATTTACAGTCTTTATTCTATCTCATCcacatattttattgaaattattgtCCCATGGGtcagtctcctgtctcagcagcAGAGGATGTGTCTTCTTGACCTCTGGATTTCCAGcccctagcatagtgcctggctcacagtaggtgctcaggaaatatttgcTGAGCTTATCATAGCATGACACTGTGTGAGAATAACAAGTAAGGAGAGAGAGCAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81099982 426 + 108555830 GCGTCTGAAACTCAGGAGCTGTTATAGACATATCTGAATATTGGGCTTCTTTTG--AAACATGAGTAGATGGGGTAGAGGTGG-------------TTTCTGTAATAccctttagttgggcttacttactccagttaaccacagtctccatccctccctatttcttccctgttaccagatcattccattcatttatgtgacttccttgacctctAGACTTTTTATATTTGCAGCCTTTATTCTATCTCATCCACATATTTTATTGAAATTATTGTCCCATGGGTCAGTCTCCTGTCTCAGCAGCAGAggatgtgtcttcttgacccccggatttccagcccttagcatagtgcctggctcacagtaggtgctcaggaaatatttgctgaGCTTATCATGGCATGACACTGTGTGAGAATAACAAGTAAGGAGAGAGAGCAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111319749 416 - 210400635 GCACCTGAAAATCAGGAGCTATTAAATACATATCTGAATA-TGGGCTCCTTTGG--AAacatgagcaaatgggttagagatgg-------------tttctgcaatgccctttcattgggcttgctcactc-----aactacaatctccatccctccctattgcttccctgttaccagatcactacattcatttctgttactttcctggcccctagacttttaatatttgcagcctttgTTCTATCATATCCACATATTTTATTGACAATTTTATCCGATGGGTCAGTCTCCTGTCTCAGCAGCacaggatgtgtcttcttgacccctggatttccagcccctagcatagtgcctggctcacagtaggtgctcaggaaatgtttactgaGCTTATCATAGTGTCACACTGCATGAGAGTAAC----AAGGAGAGAGATCAA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35222403 421 - 122678785 gtatttgaaaat-acgggctattacatctgtatctggacattgggcttcttttgaaaaaccTGGGCAAAATAGGCAGGGCTAGAGCCCTGTGCCACCATCAGTGATGCCCTGTGGTTGGGCATGCTCAC--------ACCACA------ATCCCTCCGTAAGTC-CCCCTACTTCCGGCTCAGTTCATTCATGTATGTTACTCTCTAGGCC-CTGGAATTTC--TGTTTGCTGTCTTTGCTCTACTTCACCAGCATATTTTATTGAAATGGTCTTTTTGTGGGTCAGTCCGCTGtctgtgaagtcaagattgtatcttgttcagccctgggtctccagtcctgagcactgtgcctggaacatagtaggtgctcaggagttgtttgtggaaGTGACCATTACATGGCACCACATGTGAACTCCAAGAAGGGAGAGAGGCAA- i canFam3.chr1 I 3 C 0 e mm10.chr19 37977677 1411 - 61431566 I a score=2265017.000000 s hg38.chr9_GL383541v1_alt 14947 672 + 171286 ACAGAAGGGAAAGTGGGCAGTAAAGACAGACTCTGAGATTGG-CTAACCTCTGTAGTGCAGTCAAAGGTGCAATCATAAATGCTGGCTTTCTTGCTTTCTTCCCACAGATTTGCTCACACCCCCC-AATGCCTCACCTGGCTATGTGG-GAAGACACTGGATA---------------GAGAGGAGCAGCAATGCTTCATCTTCCTCACCTTGACCCAGAAAATTAGAAGCAAGAACTTGGT-GATCTCCAGGCTAGAAGTGGTACAACAAGGAGCAGAGCCCCTGGTGAAAGGTACCTGGAGGGCGCAAGGAACAGATTGGCAAAGAGCAGAGAGGATGGGCAGG-CTCTGTGAGAGGTGAGCATCATACAGGAACCC--ACAG-------AGAGAGCAGGGCATAGTGTCTGTGTGTGGTGTAG--------GCAGCCCTCATTAGGAGAGACAGGCCTGTGTAAGGAGGAAGCAT-TTaggggcagcatagt-ggatagccaggagaagtgggcatctgggatcaaatccttgctgcatgctggctggacgtgtgactttgagcaggttaattgaccccctctggtcc----tgtctcctagtctataaaatggggacaataatgatattcacctcatagggatattgcatggattaaatgagataatgcatgttaagtgcctggcatgtgtttACTTAATGCA------CTCtatat s panTro4.chr9 68580462 672 + 137840987 ACAGAAGGGAAAGTGGGCAGTAAAGACAGACTCTGAGATTGG-CTAACCTCTGTAGTGCAGTCAAAGGTGCAATCATAAATGCTGGCTTTCTTGCTTTCTTCCCACAGATTTGCTCACACCCCCC-AATGCCTCACCTGGCTATGTGG-GAAGACACTGGATA---------------GAGAGGAGCAGCAATGCTTCATCTTCCTCACCTTGACCCAGAAAGTTAGAAGCAAGAACTTGGT-GATCTCCAGGCTAGAAGTGGTACAACAAGGAGCAGAGCCCCTGGTGAAAGGTACCTGGAGGGCGCAAGGAACAGATTGGCAAAGAGCAGAGAGGATGGGCAGG-TTCTGTGAGAGGTGAGCATCATACAGGAACCC--ACAG-------GGAGAGCAGGGCATAGTGTCTGTGTGTGGTGTAG--------GCAGCCCTCATTAGGAGAGACAGGCCTGTGTAAGGAGGAAGCAT-TTaggggcagcatagt-ggatagccaggagaggtgggcatctgggatcaaatccttgctgcatgctggctggacatgtgactttgagcaggttaattgaccccctctggtcc----tgtctcctagtctgtaaaatggggacaataatgatattcacctcatagggatattgcatggattaaatgagataatgcatgttaagtgcctggcatgtgtttACTTAATGCA------CCCtatat i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64733523 672 + 135191526 ACAGAAGGGAAAGTGGGCAGTAAAGACAGACTCTGAGATTGG-CTAACCTCTGTAGTGCAGTCAAAGGTGCAATCATAAACGCTGGCTTTCTTGCTTTCTTCCTACAGATTTGCTCACACCCTCC-AATGCCTCACCTGGCTATGTGG-AAAGACACTGGATA---------------GAGAGGAGCAGCAATGCTTCATCTTCCTCACCTTGACCCAGAAAGTTAGAAGCAAGAAATTGGT-GATCTCCAGGCTAGAAGTGGTACAACAAGGAGCAGAGCCCCTGGTGAAAAGTACCTGGAGGGAGCCAGGAACAGATTGGCAAAGAGCAGAGAGGATGGGTAGG-CTCTGTGAGAGGTGAGCATCATGCAGGAACCC--ACAG-------AGATAGCAGGGCATAGTGTCTGTGTGTGGTGTAG--------GCAGCCCTCATTAGGAGAGACAGGCCTGTGTAAGGAGGAAGCGT-TTaggggcagcgtagt-ggatagccaggagaggtgggcatctgggatcaaatccttgctgcatgctggctggatgtgtgactttgagcaggttaattgaccccctctggtcc----tgtctcctagtctataaaatggggacaataatgatattcacctcatagggatattgcatggattaaatgagataatgcatgttaagtgcctggcatgtgtttACTTAATGCA------CTCtatat i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57774249 674 - 122973662 ACAGAAGGGAAAGTGGGCAGTAAAGACAGCCTCTGAGATTGG-CTAACCTCTGTAGTGCAGGCAAAGGTGCAATCATAAACGCTGGCTTTCTTGCTTTCTTCCTACAGATTTGCTCACATCCTCC-AACGCCTCACCTGGCTATGTGG-GAAGACACTGGATA---------------GAGAGGAGCAGCAATGCTTCATCTTCCTCACCTTGACTCAGAAAGCTAGAAGCAAGAACTTGGT-GATCTCCAGGCTAGAAGTGGTACAACAAGGAGCAGAGCCCCTGGTGAAAGGTACCTGGAGGAAGCCAGGAGCAGATTGGCAAAGAGCAGAGAGGATGGGCAGG-CTCTGTGAGAGGTGAGCATCATGCAGGAACCCAGAGAG-------AGAGAGCAGGGCATGGTGTCTGTGAGTGGTGTAG--------GCAGCCCTCATTAGGAGAGACAGGCCTGTGTAAGGAGGAAGCAT-TTaggggcagcatagt-ggatagctaggaaaggcgggcatctgggatcaaatccttgctgcatgctggctggacgtgtgactttgagcaggttaattgaccccctctggtcc----tgtttcctagtctataaaatggggacaataatgatattcacctcatagggatattgcatggattaaatgagataatgcatgttaagtgcctggcatgtgtttACTTAATGCA------CTCtatat i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79706890 673 + 112192347 ACAGAAGGGAAAGTGGGCAGTAAAGACAGCCTCTGAGATTGGCCTAACCTCTGTAGTGCAGGCAAAGGTACAATCATAAACGCTGGTTTTCTTGCTTTCTTCCTACAGATTTGCTCACTCCCTCC-AATGCCTCACCTGGCTATGTGG-GAAGACACTGGATA---------------GAGAGGAGCAGCAATACTTCATCTTCCTCAGCTTGACCCAGAAAGTTAGAAGCAAGAACTTGGT-GATCTCCAGGCTAGAAGTGGTACAACAAGGAGCAAAGTCCCTGGTGAAAGTTACCTGGAAGGAGGCAGGAGCAGATTGGCAAAGAGCAGAGAGGATGGGCAGG-CTCTGCGAGAGGTGAGCATCATGCAGGAACCC--ATAG-------AGAAAGCATGGCGTGGTGCCTGTGTGTGGTGTAG--------GCAGCCCTCATTAGGAGAGACAGGCCTGTGTAAGGAGGAAGCAT-TTaggggcagcatagt-ggataaccaggaggggtaggcatctgggatcaaatccttgctgcatgctggctggatgtgtgactttgagcaggttaaatgaccccctctggtcc----tgtttcctagtctataaaatggggagagtaatgatattcacctcttagggatattgcatgtattaaatgagataatgcatattaggtgcctggcacgtgtttACTTAGTGCA------TTCtatat i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80787732 673 + 112612857 ACAGAAGGGAAAGTGGGCAGTAAAGACAGCCTCTGAGATTGGCCTAACCTCTGTAGTGCAGGCAAAGGTACAATCATAAACGCTGGTTTTCTTGCTTTCTTCCTACAGATTTGCTCACTCCCTCC-AATGCCTCACCTGGCTATGTGG-GAAGACACTGGATA---------------GAGAGGAGCAGCAATACTTCATCTTCCTCAGCTTGACCCAGAAAGTTAGAAGCAAGAACTTGGT-GATCTCCAGGCTAGAAGTGGTACAACAAGGAGCAAAGTCCCTGGTGAAAGTTACCTGGAAGGAGGCAGGAGCAGATTGGCAAAGAGCAGAGAGGATGGGCAGG-CTCTGCGAGAGGTGAGCATCATGCAGGAACCC--ATAG-------AGAAAGCATGGCGTGGTGCCTGTGTGTGGTGTAG--------GCAGCCCTCATTAGGAGAGACAGGCCTGTGTAAGGAGGAAGCAT-TTaggggcagcatagt-ggataaccaggaggggtaggcatctgggatcaaatccttgctgcatgctggctggatgtgtgactttgagcaggttaaatgaccccctctggtcc----tgtttcctagtctataaaatggggagaataatgatattcacctcttagggatattgcatgtattaaatgagataatgcatattaggtgcctggcacgtgtttACTTAGTGCA------TTCtatat i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76836503 673 + 107442819 ACAGAAGGGAAAGTGGGCAGTAAAGACAGCCTCTGAGATTGGCCTAACCTCTGTAGTGCAGGCAAAGGTACAATCATAAACGCtggttttcttgctttcttcctaCAGATTTGCTCACTCCCTCC-AATGCCTCAGCTGGCTATGTGG-GAAGACACTGGATA---------------GAGAGGAGCAGCAATACTTCATCTTCCTCAGCTTGACCCAGAAAGTTAGAAGCAAGAACTTGGT-GATCTCCAGGCTAGAAGTGGTATAACAAGGAGCAAAGTCCCTGGTGAAAGTTACCTGGAAGGAGGCAGGAGCAGATTGGCAAAGAGCAGAGAGGATGGGCAGG-CTCTGCGAAAGGTGAGCATCATGCAGGAACCC--ATAG-------AGAAAGCATGGCGTGGTGCCTGTGTGTGGTATAG--------GCAGCCCTCATTAGGAGAGACAGGCCTGTGTAAGGAGGAAGCAT-TTAGGGGCAGCATAGT-GGATAACCCGGAGGGGTAGGCATCTGGGATCAAATCCTTGCTGCATGCTGGCTGGatgtgtgactttgagcaggtTAAATGACCCCCTCTGGTCC----TGTTTCCtagtctataaaatggggagaataatgATATTCACCTCTTAGGGATATTGcatgtattaaatgagataatgcatattaGGTGCCTGGCACGTGTTTACTTAGTGCA------ttctatat i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81100408 673 + 108555830 ACAGAAGGGAAAGTGGGCAGTAAAGACAGCCTCTGAGATTGGCCTAACTTCTGTAGTGCAGGCAAAGGTGCAATCATAAACGCTGGCTTTCTTGCTTTCTTCCTACAGATTTGCTCACTCCCTCC-AATGCCTCACCTGGCTATGTGG-GAAGACACTGGACA---------------GAGAGGAGCAGCAATGCTTCATCTTCCTCAGCTTGACCCAGAAAGTTAGAAGCAAGAACTTGGT-GATCTCCAGGCTAGAAGTGGTACAACAAGGAGCAAAGTCCCTGGTGAAAGGTACCTGGAGGGAGGCAGGAGCAGATTGGCAAAGAACAGAGAGGATGGGCAGG-CTCTGCGAGAGGTGAGCATCATGCAGGAACCC--ATAG-------AGAAAGCATGGTGTGGTGCCTGTGTGTGGTGTAG--------GCAGCCCTCATTAGGAGAGACAGGCCTGTGTAAGGAGGAAGCAT-TTaggggcagcgtagt-ggataaccaggaggggtaggcatctgggatcaaatccttgctgcatgctggctggatgtgtgactttgagcaggttaattgaccccctctggtcc----tgtttcctagtctataaaatggggacaataatgatattcacctcttagggatattgcatggattaaatgagataatgcatgctaggtgcctggcacgtgtttACTTAGTGCA------TTCtatat i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111320165 672 - 210400635 ACAGAAGGGAAAGTGGGCAGTGAAGACAGCCTATGAGATCGGCCTAACCTCTGTAGTACAGGCAAGGGTGCAATCATAAACGCTGACTTTCTTACTTTCTTCCTACAGATTTGCTCACTCCCTCC-AATGCCTCACCTGGCTATGTGG-GAAGACACTAGAGA---------------GAGAGGAGCAGCAATGCTTCATCTTCCATACTTTTACCCAGAAAGTTAGAAGCAACAACTTGGT-GATTTCCAGGCTAGAAGTGGTGCAATGAGGAGCAGAGACCCTGGTAAAGGGTACCTGGAGGGAGCCAGAAGCAGACTGGCAAAGAGCAGAGAGAATGGGCAGG-CTCTGGGAGAGGTGAGCATCATGCAGGAACCG--ACAC-------AGAGAGCAGGGTGTGGTGCTTGTATGTGGTGTAG--------GCAGCCCTCATTAGGAGAGACATGACTGTGTAAGGAGGAAGCAT-TTaggggcagcgtagtgggatagccaggagaggtgggcatctgggatcaaatccttgatacatgctggctggatgagtgactttgagcaggttaattgaccccctttggtcc----tgtttcctagtctgtaaaatggggacaataatgatattcacctcattgggatattgcatgaattaaatgagataatgcatgttaagtgcctgacatgtgtttACTTAATGCA------CTC--tat i calJac3.chr1 C 0 C 0 s mm10.chr19 37979088 605 - 61431566 ACAGAAAGGAATGTGGGTGCTCCAAACAGCTTCTGTGTGGGG------CAGCACAGTGCATGT---GGTACAAGTGTGAACCCTGGCTTACTTTCTTCTTCCCCAGG-----GTCAACTCCTTCC-TGAGCCTTCTCCAGCTATGGGGAGAAGACAGCAAACAGCTACAGAAACTCCTGCAAGGAACATCAGGGTTTCACTTGGCTCTCTTAT-------------GAAACCTGAATTTAGA-AACCTCCAGGATG-----------------------------------------CTAGAAAAAGCACAGAACA---TGATTAATAACACTAGGGTTAGCCCGGTCCCAGTGAGAGGCCAATACTATGGGTTGACAC--ATAGCAGACACAGAGCACAGGTCATTTCCCCAGCATATGCTGCAG--------GGAGCTTCTATTAAAAGGAAGTGTGCCTTATAGAGTG-------------------------CAAAAACCATCAGAGTCTGACTTctggggtcaaatcctggtggcttattggccagaagtgtaaacttgaataagtcaattgaccactcttggtctgttgtgcttttta-tttgaaaaatgaatacaataataacatctactttacagagatgttgcatgaattaaatgggg-aaagcatatgaagtgtctggcacctctctctctctctct------ctctctct i mm10.chr19 I 1411 I 87 s canFam3.chr1 35222824 596 - 122678785 AGGGAAGGGAAGGTGCGTGGCGAAG--AGCCTCCCCATCTGGCTCTGCATCAGTGGTGCACACAGGGGTGC-ATCATAAGCACTCA-TTTCTTTCTTTCCTCCCGCAGATGAGCCTCTTCCCTCCTGATGCCTCA---------GTGG--------CTGGGCA---------------GAGGGTGA-----------CACCCTCTTCTGTTGTGCCCAGAAAACTGGCCACAAGACCAAGCTAGGTCTTCAGCCCAAGAGTGACATAGCAAAAAGCCAATCCCTGGTTGTGGCCCCCCCGGGGGGAGCAGGGAGCAAAGCAGCCAAGGGCACAAGCATATGCCAGC-TTCTGTGAGAGGGC----TCGTGTGTG---CT--CCAG-------AGATAGCAGGCCCCTTTCCCTGCATGTGGTGTCGGCATGTCAGCAACCCTTGCCTGGGGAGACAGGCCTCTGTAAAGAGGAAATTTCTTAGGGGTGGTGTAGC-----------------------------------------------------TTGACCtgtgacacagaacaagttacttgacc-cttctgggcc----tgttttcccgcctgtgagatggagataacaa--gtctccatctcacagggatgcagca-ggattgaaggagatgactcatggaaagtgcctggcccatgtttgCTGGATGCTTAACACTTCtgtgt i canFam3.chr1 C 0 C 0 a score=221648.000000 s hg38.chr9_GL383541v1_alt 15619 64 + 171286 tagttttctatggttgccagaacaaattactacaaaccgggtggcttaaaagaacagaaagcta s panTro4.chr9 68581134 64 + 137840987 tagttttctatgattgccagaacaaattactacaaaccaggtggcttaaaagaacagaaagcta i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64734195 64 + 135191526 tagttttctatggttgccagaacaaattactacaaactgggtggcttaaaagaacagaaagctg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57774923 64 - 122973662 tagttttctatggttgccagaacaaattaccacaaactgggtggcttaaaagaacagaaaacta i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79707563 64 + 112192347 tagttttctatggttgccagaacaaattaccgcaaactgggtggcttaaaagaacagaaagctt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80788405 64 + 112612857 tagttttctatggttgccagaacaaattaccacaaactgggtggcttaaaagaacagaaagctt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76837176 64 + 107442819 tagttttctatggtTGCCAGAACAAATTACcgcaaactgggtggcttaaaagaacagaaagctT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81101081 64 + 108555830 tagttttctatggttgccagaacaaattaccgcaaactgggtggcttaaaagaacagaaagctt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111320837 64 - 210400635 tagttttctacagttgccagaacaaattaccacaaactgggtggcttaaaagaacagaaagcta i calJac3.chr1 C 0 C 0 s canFam3.chr1 35223420 54 - 122678785 tagtgtcctgcagctgccagga----------caaaccaggggacttaaaacaacggaaagttc i canFam3.chr1 C 0 C 0 e mm10.chr19 37979693 87 - 61431566 I a score=2129414.000000 s hg38.chr9_GL383541v1_alt 15683 644 + 171286 ttcactcacagtttcagaggccagaagccccaaatcaaggtgtctgcagaa-------tacagtcttct-ggggctcta--------ggggagaatttgtt------------------attccttg---gctt----ggggct----gcatcactccaatctctttacatg-ccatctccatctttacgtgaccatttcctacatgtgtctgtgccttttcttctgactcttataagga-tacttgccattgatttagggcccacctggtaatacaggatgatctcatcccaagatccctaacttaattaaattagc--aaagtccctttttccaaatgaggtcacatttgcagattctgggatacggatgtatctttt-----gagccaccat----tcaacctattacaATACCTAAG---TACTGAGTGCTTT--CTGTAAGCCAGAACTTGATATGTGTTATTTGATCAGTTGCTTAAGCTAAATCTTGGAG---AATAGCATTCTGGG------TTCCTTGGGACCTGATCCTGTTTTCCCAAGTAATAAGA-----------GGGTACCATGTGGGTGCTATGATTAGTGACCAAAGGAAGTTGGTTGACGT----AGTTTCTAGATTCTCTGGC--TTCCCTCCTCAGTCTTTTTCCCTGCATCCTGACTTAGGCCACATACAATATTTTTTCCTTTCTCTGCAAAACGTCtgtggtaggcattt s panTro4.chr9 68581198 644 + 137840987 ttctctcacagtttcagaggccagaagccccaaatcaaggtgtctgcagaa-------tacagtcttct-ggggctcta--------ggggagaatttgtt------------------attccttg---gctt----ggggct----gcatcactccaatctctttacatg-ccatctccatctttacatgaccatttcctacatgtgtctgtgccttttcttctgactcttataagga-tacttgccattgatttagggcccacctggtaatacaggatgatctcatcccaagatccctaactttattaaattagc--aaagtccctttttccaaatgaggtcacatttgcagattctgggatacggatgtatctttt-----gagccaccat----tcaacctattacaATACCTAAG---TACTGAGTGCTTT--CTGTAAGCCAGAACTTGATATGTGTTATTTGATCAGTTGCTTAAGCTAAATCTTGGAG---AATAGCATTCTGGG------TTCCTTGGGACCTGATCCTGTTTTCCCAAGTAATAAGA-----------GGGTACCATGTGGGTGCTATGATTAGTGACCAAAGGAAGTTGGTTGACGT----AGTTTCTAGATTCTCTGGC--TTCCCTCCTCAGTCTTTTTCCCTGCATCCTGACTTAGGCCACATACAATATCTTTTCCTTTCTCTGCAAAACGTCtgtggtaggcattt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64734259 642 + 135191526 ttctctcacagtttcagaggccagaagccccaaatcaaggtgtctgcagag-------tacagtcttct-ggggctcta--------ggggagaatttgct------------------attccttg---gctt----ggggct----gcatcactcccatctgtttacatgaccatctccatctttatgtgaccatttcctacatgtgtctgtgccttttcttctgtctcttataagga-tacttgccattgatttagggcccacctggtaatgcaggatgaactcatcccaagatccctaacttaattaaattagc--aaagtccctttttccaaatgaggtcacatttgcagattctgggatacagatgtatctttt-----gagccaccat----tcaacctattacaATACGTAAG---TACTGAGTGCTTT--CTGTAAGCCAGAACTTGATATGTGTTATTTGATCAGTTGCTTAAGCTAAATCTTGGAG---AATAGCGTTCTGGG------TTCCTTGGGACCTGATCCTGTTTTCCCAAGTAATAAGA-----------GGGTACCATGTGGGTGCTATGATTAGTGACCAAAGGAAGTAGGTTGACAT----AATTTCTAGATTCTCTGGA--TTCCCTCCTCAGTCTTTTTCCCTGCATCCTGACTTAGGCCACATAC---ATCTTTTCCTTTCTCTGCAAAACGTCtgtggtaggcattg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57774987 632 - 122973662 ttctctcacagtttcagaggccagaagccccaaatcaaggtgtctgcagag-------tacagactcct-ggggctcta--------ggggagaatt---t------------------attccttg---gctt----ggggct----gcatcactccaatctctttacatg--------------------atcatctcctacatgtgtctgtgccttttcttctgtctcttgtaagga-tacttgccattgatttagggcccacctggtaatgcaggatgatctcatcccaagatccctaacttaattaaattagc--aaagtccctttttccaaaagaggtcacatttgcagattctgggatacagatatatctttt-----gagccaccat----tcaatctattacaATACCTAAG---TACTGAGTGCTTT--CTATAAGCCAGAACTTGATATGTGTTATTTGATCAGTTGCTAAAGCTAAATCTTGAAG---AATAGCGTTCTGGG------TTCCTTGGGGCCTGAT-CTGTTTTCCCAAGTAATAAGAGGGTACCAGGTGGGTACCATGTGGGTGCTATGATTAGTGACCAAAGGAAGTAGGTTGACGT----AATTTCTAGATTCTCTGGA--TTCCCTCCTCAGTCTTTTTCCCTGCATCCTGACTTAGGCCACATACAATATCTTTTCCTTTCTCTGCAAAATGTCtgtggtaggcattg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79707627 651 + 112192347 ttctctctccgtttcagaggccag-agccccaaatcaaggtgtctgcagag-------tacagtcttct-ggggctcta--------ggggagaatttgttgtc---------------attccttg---gctt----ggggct----gcatcactccaatct----------ccgactccatctttacatgaccacctcctacatgtttctgtgccttttcttctgtctcttataagga-cacttgtcattgatttagagcccacctggtaatgcaggatgatttcctcccaagatccctaacttaattaattttgc--atagtccctttttccaaatgaggtcacatttgcaggttctgggatacagacgtatctttt-----gagccaccat----tcaacctattacaATACCTAAG---TACTGAGTGCTTT--CTGTAAGCCAGAACTTGACATGCGTTATTTGATCGGTTGCTTAAGCTAAATCTTGGAGAATAATAGAGTTCTGGG------TTCCTTGGGGCCTGATCCTGTTTTCCCAAGTAATAAGAGGATACCAGGTGGGTACCATGTGGGTGCTATGATTAGTGACCAAAGGAAGTAGGTTGACGT----AATTTCTAGATTCCCTGGA--TTCCCTCCTCAGTCCTTTCCCCTGCATCCTGACTTAGGCCACATACAGTATCATTTCCTTTCTCTGCAAAACGTCtgtggtaggcatgg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80788469 651 + 112612857 ttctctctccgtttcagaggccag-agccccaaatcaaggtgtctgcagag-------tacagtcttct-ggggctcta--------ggggagaatttgttgtc---------------attccttg---gctt----ggggct----gcatcactccaatct----------ccgactccatctttacatgaccacctcctacatgtgtctgtgccttttcttctgtctcttataagga-cacttgtcattgatttagagcccacctggtaatgcaggatgatttcctcccaagatccctaacttaattaattttgc--atagtccctttttccaaatgaggtcacatttgcaggttctgggatacagatgtatctttt-----gagccaccat----tcaacctattacaATACCTAAG---TACTGAGTGCTTT--CTGTAAGCCAGAACTTGACATGCGTTATTTGATCGGTTGCTTAAGCTAAATCTTGGAGAATAATAGAGTTCTGGG------TTCCTTGGGGCCTGATCCTGTTTTCCCAAGTAATAAGAGGATACCAGGTGGGTACCATGTGGGTGCTATGATTAGTGACCAAAGGAAGTAGGTTGACGT----AATTTCTAGATTCCCTGGA--TTCCCTCCTCAGTCCTTTCCCCTGCATCCTGACTTAGGCCACATACAGTATCATTTCCTTTCTCTGCAAAACGTCtgtggtaggcatgg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76837240 651 + 107442819 TTCTCTCTCAGTTTCAGAGGCCAG-AGCCccaaatcaaggtgtctgcagag-------TACAGTCTTCT-ggggctcta--------ggggagaatttgTTGTC---------------ATTCCTTG---GCTT----ggggct----gcatcactccaatct----------ccgACTCCATCTTTACATGACCACCTCCTACATGTGTCTGtgccttttcttctgtctcttataagga-cacttgtcattgatTTAGAGCCCACCTGGTAATGCAGGGTGATTTCCTCCCAAGATCCCTAACTTAATTAATTTTGC--ATAGTCCCtttttccaaatgaggtcacatttgCAGGTTCTGGGATACAGATGTATCTTTT-----GAGCCACCAT----TCAACCTATTACAATACCTAAG---TACTGAGTGCTTT--CTGTAAGCCAGAACTTGACATGCATTATTTGATCGGTTGCTTAAGCTAAATCTTGGAGAATAATAGAGTTCTGGG------TTCCTTGGGGCCTGATCCTGTTTTCCCAAGTAATAAGAGGATACCAGGTGGGTACCATGTGGGTGCTATGATTAGTGACCAAAGGAAGTAGGTTGACGT----AATTTCTAGATTCCCTGGA--TTCCCTCCTCAGTCCTTTCCCCTGCATCCTGACTTAGGCCACATACAgtatcatttcctttctctgcaAAACGTCTGTGGTAGGCATGG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81101145 644 + 108555830 tcctctctcagtttcggaggccag-agccccaaatcaaggtgtctgcagag-------cacagtcttct-ggggctcta--------ggggagaatttgttgtc---------------attccttg---gctt----ggggct----gcatcactccaatct----------ccgactccatctttacatgaccacctcccacatgtgtctgtgccttttcttctgtctcttagaagga-cacttgtcactgatttagggcccacctggtaatgcaggatgatttcatcccaagatccctaacttaattaattttgc--atagtccctttttccaaatgaggtcacatttgcaggttctgggatacagatgtatctttt-----gagccaccat----tcaacctattacaATACCTAAG---TACTGAATGCTTT--CTGTAAGCCAGAACTTGACATGCGTTATTTGATCGGTTGCTTAAGCTAAATCTTGGAGAATAATAGAGTTCTGGG------TTCCTTGGGGCCTGATCCTGTTTTCCCAAGTAATAAGAG-------GGTGGGTACCATATGGGTGCTATGATTAGTGACCAAAGGAAGTAGGTTGACAT----AATTTCTAGATTCCCTGGA--TTCCCTCCTCAGTCCTTTCCCCTGCATCCTGACTTAGGCCATATACAGTATCATTTCCTTTCTCTGCAAAACGTCtgtggtaggcatgg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111320901 643 - 210400635 ttctct--cagtttcagaggctggaagtccaaaatcaaggtgtctgcagag-------tacagtcttct-gggtctcca--------gggggaaatttgttatc---------------attctttt---gctt----ggggct----gcctcactctactct----------ct--ctctgtattcacatgaccatctcttacatgtgtctgtaacttttcttctgactcttataagga-cacttgccattgatttagggtccagctggtaatgcaggatgatctcatcctaagatccctaacttaattaaattagc--atagtccctttttccaaatgaggtcacattcacaggttctggaacacagaggtatctttt-----gagccaccat----tcaacctattacaATACCTAAG---TACTGAGTGCTTT--CTGTAAGCCAGAACTT-ATATGCATTATTTGATTTGTTGCTTAAGCTAAATCTTGGAG---AATAGAGTTCTGGG------TTCCTTGCAGCCTAATCCAG-TTTCCCAAGTAATAAGAGAGTACCAGGTGGGTACCATGTGGGTGCTATGATTAGTGACCACAGGAAGTAGGTTCACAT----AATTTCTAGATTCTCTGGA--TTCCTCCCTCAGTCCTTTTCCCTGCACCTTGACTTAGGCCACATACAGTATCTTTTCCTTTCTCTGCAAAACTTCtgtagtacgccttg i calJac3.chr1 C 0 C 0 s mm10.chr19 37979780 658 - 61431566 CCCTTTTGCAGTGTTAGA-GCCAGAAGTTCAAAGTCAAGAGATCTGCAAAG-------CTTGCTCCTCG-AGGACTCTGCGATGGGTGGTGTGTATTTTTCACCTCTTCCAGTTTCAAAGTTCCATACATTCCT----GGGGCT----GC-Ccagcccagtt-----------ccctttccatctttatgtg---atctgctgtacgtgtctg--acttcccttctgtctcttacaacacttatttaccattgactcagggcccatctgttaatccagggtgacctcatctcaacatccctaattttattgcttaagcatatagcctctctgtccaaataaggtcacattcgtgggcttaaggatatatgcatatctcct-----tagggaggatactgttaccctacctTAGTTCCTAAA---T-CTGTGTGCTCTTATTTTCAGCTGGAGCTTTATATATATTA-TTGATCTTTTGACTAAGCTAAGTCTTGAGG---GATAGATTTCTGGG-------TCCCTGAACTCTGGGTCTTCCTTCCTAAATGATAAGATATTAC-----TGCAGCTGTGCGGGCTCCCTGTTCAGTGACCAAAGAACAAAGACTGATGTACGGAACACCTAGATTCTCTAGAGTTTTTTTCTGCAACCCTCTGCCTGGCTTC---------------TGCAGTACCTCTTCCTTCCTGTACAAAG-GTCTGTGATGGGCACTT i mm10.chr19 I 87 I 3 s canFam3.chr1 35223474 576 - 122678785 ttctcccatcaatctggaggccagaagtctgaaatcaaggagtctgaggggccagggccacgctcctctgggggctgtg--------ggactggacctgct--c---------------atc---tg---gccttctaggggctccaggcatctcttcctcct--------------------------------------tacctgtgtctgttactggcc-tctgtctcatggaaggg-cacttggccttgatgtggggtcc------------------atttca-------atccctgatttaactacatctgc--a-aggcgccttttctaaacaaggtcatattcatag---------------cctatcttttttggggggctaccat----tcaacccaccacaATACCTCATGTCTATTAGGTGCTTT--CTCTAAATCAGAACTTTACCTGTGTTATTTAATCATTCCATTACACTAAATCTTAGAG---GAGAGAGTCCTGGGTAGTCCTCCCCTGGGGAG-----GCGCTTTTCCAGGGGTTGAGGCAGTGCACGG------CCACA-GGGCTCTAAGGTCAGTGACTGGAGGAAGTGGGTTGATGTGCATAAGTTCTAGATGTTCTGGA--TTTCCTCCTTGGCTCTCT--------------------CCATGTGCAATATTCCTTCCCTTCTCTGCAAAATGTCtgtggtggacacca i canFam3.chr1 C 0 C 0 a score=1369188.000000 s hg38.chr9_GL383541v1_alt 16327 435 + 171286 ttatgctgtccagatcccccttcaagaaatgacttt-tagtcccagcggcttggagtattgtcat----cggccttcaacttctgatcctccccagtgcagagagctgcctc--actggagatcacttctgtcccagcataggccacaaccagtgacagatggagacagcagtacaaatgccct-ttcatttcagcctaacatgagacaagttagataggccattttaactccatagttccttg-ggggattgaaagaagctttgtgggatttgcattgcaactccaattctccctccaccctttcctgcttcct-------------------------------ctccctc----------------ccttccatg-gcactgatcccaaggtactcctgattaaacaccctgcacattaaacttcaaatcagagtctgcttcccagacattctaacttgtgccaATGTCTAAGGATCATATATTCTTGG s panTro4.chr9 68581842 435 + 137840987 ttatgctgtccagatcccccttcaagaaatgacttt-tagtcccagcggcttggagtattgtcat----cggccttcaacttctgatcctccccagtgcagagagctgcctc--actggagatcacttctgtcccagcataggccacaaccagtgacagatggagacagcagtacaaatgccct-ttcatttcagcctaacatgagacaagttagataggccattttaactccatagttccttg-ggggattgaaagaagctttgtgggatttgcattgcaactccaattctccctccaccctttcctgcttcct-------------------------------ctccctc----------------ccttccatg-gcactgatcccaaggtactcctgattaaacaccctgcacattaaactccaaatcagagtctgcttcccagacattctaacttgtgccaATGTCTAAGGATCATATATTCTTGG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64734901 436 + 135191526 ttgtgctgtccagatcccccttcaagaaatgacttt-tagtcccagcggcttggagtattgccat----cggccttcaacttctgatcctcgccagtgcagagagctgcctc--actggagatcacttctgtcccgacgtaggccacaaccagtgacagatggagacagcagtacaaatgccct-ttcatttcagcctaacatgagacaagttagataggacattttaaccccatagttccttgagggggttgaaagcagctttgtgggatttgcattgcaactccaattctccctccaccctttcctgcttcct-------------------------------ctccctc----------------ccttccgtg-gcactgatcccaaggtgctcctgattaaacaccctgcacattaaactcccaatcagagtctgcttcccagacattctaacttgtgccaGTGTCTAAGGATCATATATTCTTGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57775619 425 - 122973662 ttgtgctgtccatattccccttcaagaag-gacttt-tagtcccagcggct-----tattgtcat----cggccttcaaattctgatctcccccagtgcagagagctgcctc--actggagatcagttctgtcccagcgtaggccacaaccactgacagatggagacagcagtacaaatgccct-ttcatttcagcccaacatgagacaagt----taggccattttaactccatagttccttg-gggggttgaaagaagctttgtgggatttgcattgcaactccaattctccctccaccctttcctgcttcct-------------------------------ctccctc----------------ccttccatg-gcactgatcccaaggtactcctgattaaacaccctgcacattaaactccaaatcagagtctgcttcccagacattctaacttgtgccaGTGTCTAAGGATCATATATTCTTGG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79708278 434 + 112192347 ttgtgctgtcaagatcccccttcaagaaaggacttt-tagtcccagcggctgggagtattgtcat----ccgccttcaacttctgatcctccccagtgcagagagctgcctc--actggagatcacttctgtcccaaggtaggccaccgccagtgacagatgaagacagcactacaaatgccct-ttcatttcagcctaacatgagacaagttggataggctgttttaactccatagttccctg-gagggttgatataagctttgtgggatttgcattgcaactttaattctccctccacccattcctgcttcc--------------------------------ctccctc----------------ccttccatg-acactgatcccaaggtactcctgattaaataccctgcacattaaactccaaatcagagtctgcttcccagacgttctaacttgtgccaATGTCTAAGGGTTGTATATTCTTGG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80789120 434 + 112612857 ttgtgctgtcaagatcccccttcaagaaaggacttt-tagtcccagcggctgggagtattgtcat----ccgccttcaacttctgatcctccccagtgcagagagctgcctc--actggagatcacttctgtcccaaggtaggccaccgccagtgacagatgaagacagcactacaaatgccct-ttcatttcagcctaacatgagacaagttggataggctgttttaactccatagttccctg-gagggttgatataagctttgtgggatttgcattgcaactttaattctccctccacccattcctgcttcc--------------------------------ctccctc----------------ccttccatg-acactgatcccaaggtactcctgattaaataccctgcacattaaactccaaatcagagtctgcttcccagacgttctaacttgtgccaATGTCTAAGGGTTGTATATTCTTGG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76837891 434 + 107442819 TTGTGCTGTCAAGATCCCCCTTCAAGAAAGGACTTT-TAGTCCCAGCGGCTGGGAGTATTGTCAT----CCGCCTTCAACTTCTGATCCTCCCCAGTGCAGAGAGCTGCCTC--ACTGGAGACCACTTCTGTCCCAAAGTAGGCCACCTCCAGTGTCAGATGAAGACAGCACTACAAATGCCCT-TTCATTTCAGCCTAACATGAGACAAGTTGGATAGGCTGTTTTAACTCCATAGTTCCCTG-GAGGGTTGATATAAGCTTTGTGGGATTTGCATTGCAACTTTAATTCTCCCTCCACCCattcctgcttcc--------------------------------ctccctc----------------ccttccatg-aCACTGATCCCAAGGTACTCCTGATTAAATACCCTGCACATTAAACTCCAAATCAGAGTCTGCTTCCCAGACGTTCTAACTTGTGCCAATGTCTAAGGGTTGTATATTCTTGG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81101789 434 + 108555830 ctgtgctgtcaagatcccccttcaagaaaggacttt-tagtcccagcggctgggagtattgtcat----cggccttcaacttctgatcctccccagtgcagagagctgcctc--actggagatcacttctgtcccaaggtaggccacctccagtgacagatgaagacagcactacaaatgccct-ttcattgcagcctaacatgagacaagttggataggccattttaactccatagttccctg-gggggttgatagaagctttgtgggatttgcattgcaactttaattctccctccacccattcctgcttcc--------------------------------ctccctc----------------ccttccatg-acactgatcccaaggtactcctgattaaataccctgcacattaaactccaaatcagagtctgcttcccagacgttctaacttgtgtcaGTATCTAAGGATCGTATATTCTTGG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111321544 468 - 210400635 ttgtgctgtccagatcccccttcaagaaaggacttt-tggtcccagtggctgggagtattgtcat----aagccttcaacttctgatcctccccagtgc--agagttgcctc--actggagatcacttctgtctcaaggtaggctacatccagtgacagatggagacagcagtacaaaggccct-tttatttcagcctcacatgagacaagttggatagggcattttaactc-------------atagggagaaagcagctttgtgggatatgcattgcaacttcaattctccctctacccattcctccttcctctccatatcctctccaggatatgcattgcaacttcctctctgtctgtctattctccttccatg-gcactgatcccaagatattcctgattaaacactctgcacattaaactccaaattagagtctgctgctcagaaattctaacttatgccaATGTCTAAGGATTATATATTCTTGG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35224050 411 - 122678785 gtgtgctgcccagatcctccttctgggaagaactctgtcatctcagctggtgagattgttgtcaccagacagccttcagccatcagcccccttgggt--------cggcctcttgttggggatcact--catccttgtgtggaccacatccgctgtggcatggaaggagcaatacaaggaacctggccatatctgcctcatatgggataaactgcgtgggccattttaactccagagtagccag-tggggtcaggagatgctttgcagggcttgcattgcaatgtcacctctccctcagcccgggtctgtctcct-------------------------------tctcctc----------------ccttccacacgtgcagagcccaag---------------cacctcac--------ctccaaatcagagtctgcttcccagagaagccatcctacACCAGTGTCCAAGGATCATCTGTTCTTCA i canFam3.chr1 C 0 C 0 e mm10.chr19 37980438 3 - 61431566 I a score=2027320.000000 s hg38.chr9_GL383541v1_alt 16762 593 + 171286 GATCAAACAATTATATGCAAAATAGAAAATTTGGT---C----TGAGTTTGTACTTATGTAT---GATTCTG-TT-CCCATAGGTGGCAATAC----------------------------------------------------------------------ACAATGTCACGTTAAGGTTGTAAATCATATTTTAAATTTTGGAAG-GATCTCTTTAGGGCTTTGAAGTTTTTCATTTT------------CCTATG--ACTT---AGAACATACGACATGAATCTAAGGCAATTCTAAAACTTTGAAATACTCCTTAAGTATCTGGAAAAAGGAGCACCAGTTTGATTGTTGCTGAAAA----------CTTCTTTAGTTGAAAATAATGTTTTGAGGTTTCGACTGAATGTATAACTGTCTTTGAATTTTTAGTTAAGTAGTGTGATGAAATTCATCAGATATTTAGCACCATCTGTGATCAAGAAGTCAAAAAAAAAAA-GAATATAAGACCCAAGTGAGAGAAG-TCCTGTACTGGTTGagaaaataggcttttggaataaagcagatctgggtttgagttttgtctct-actgtccacagtcactgaactctgtgcctcagtttccccatctattaaat-ggggataatgaacatatttatcctgtagagattttgtgaagcttaaatgagattatctac s panTro4.chr9 68582277 594 + 137840987 GATCAAACAATTATATGCAAAATAGAAAATTTGGT---C----TGAGTTTGTACTTATGTAT---GATTCTG-TT-CCCATAGGTGGCAATAC----------------------------------------------------------------------ACAATGTCACGTTAAGGTTGTAAATCATATTTTAAATTTTGGAAG-GATCTCTTTAGTGCTTTGAAGTTTTTCATTTT------------CCTATG--ACTT---AGAACATACGACATGAATCTAAGGCAATTCTAAAACTTTGAAATACTCCATAAGTATCTGGAAAAAGGAGCACCAGTTTGATTGTTGCTGAAAA----------CTTCTTTAGTTGAAAATAATGTTTTGAGGTTTCGACTGGATGTATAACTGTCTTTGAATTTTTAGTTAAGTAATGTGATGAAATTCATCAGATATTTAGCACCATCTGTGATCAAGAAGTCAAAAAAAAAAAAGAATATAAGACCCAAGTGAGAGAAG-TCCTGTACTGGTTGagaaaataggcttttggaataaagcagatctgggtttgagttttgtctct-actgtccatagtcactgaactctgtgcctcagtttccccatctattaaat-ggggataatgaacatatttatcctgtagagattttgtgaagcttaaatgagattatctac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64735337 589 + 135191526 GATCAAACAATTATATGCAAAATAGAAAATTTACT---C----TGAGTTTGTATTTATGTAT---GATTCTG-TT-CCCATAGGTGGCAATAC----------------------------------------------------------------------ACAATGTCACGTTAAGGTTGTAAATCATATTTTAAATTTTGGAAG-GATCTCTTTAGGGCTTTGAAGTTTTTCATGTT------------CCTATG--ACTT---AGAACATACGACATGAATCTAAGGCAATTCTAACACTTTGAAATACTCCATAAGTAACTGGAAAAAGGAGCACTAGTTTGATTGTTGCTGAAAA----------CTTCTTTAGTTGAAAATAATGTTTTGAGGTTTCGACTGGATGTGTAACTGTCTTTGAATTTTTAGTTAAGTAATGTGATGAAATTCATCAGATATTTAGCACCATCTGTGATCAAGAAGTCAAAAAAAA----GAATATAAGACCCAAGTGAGAGAGGCTCCTGTACTGGTTGagaaaataggcttttggaataaagcagatctgggtttgagttttgtctct-actgtccacagtcactgaactctgcgcctcagcttccccatctattaaat-ggggataataaac--atttatcctatagagattttgtgaagcttaaatgagattatctac i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57776044 571 - 122973662 GATCAAACAATTATATGCAAAATAGAAAATTTACT---C----TGAGTTTGTACTTATGTAT----ATTCTG-TT-CCCATAGGTGGCAATAC----------------------------------------------------------------------ACAATGTCACCTTAAGGTTGTAAATCATATTTTAAATTTTGGAAG-GATCTCTTTAGGGCTTTGAAGTTTTTTATTTT------------CCTATG--ACTT---AGAACATAAGACATGAATCTAAGGCAATTCTAAAACTTTGAAATACTCCATAAGTATCTGGAAAAAAGAGCACCAGTTTGATTGTTGCTGAAAA----------CTTGTTTGGTTGAAAATAA--------------------ATGTATAACTGTCTTTGAATTTTTAGTTAAGTAATGTGATGAAATTCATCAGGTATTTAGCACCATCTGTGATCAAGAAGTCAAAAAAAAA---GAATACAAGACCCAAGTGAGAGAGGCTTCTATACTGGTTGagaaaataggcttttggaataaagcagatctgggtttgagttttgtctct-actgtccacagtcacggaactctgcacctcagcttcccaatctattaaat-ggggataataaacatgtttatcttatagagattttgtgaagcttaaatgagattatctac i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79708712 591 + 112192347 GATCAAACAATTATATGCAAAATAGAAAATTTACT---C----TGAGTTTTTACTTAAGTATAGTGATTCTG-TT-CCCATAGGTGGCAATAC----------------------------------------------------------------------ACAATGTCACCTTAAGGTTGTAAATCATATTTTAAATTTTGAGGG-GATCTCTTTAGGGTTTTGAGGTTTTGTATTTT------------CCTATG--ACTT---AGAACATATGACATGAATCGAAGGCAATTCTAAAACTTTGAAATACTCCATAAGTATCTGGAAAAAGGAGCACCAGTTTGATTGTTGCTGAAAA----------CTTGTTTGGTTGAAAATAGTGTTTTGAGGTTTCAACTGGATATATAACTGTC--TGAATTTTTAGTTAAGTAATGTGATGGAATGCATCAGATATTTAACACCATCTGTGATCAAGAAGTCAAAAAAA-----GAATATAAGACCCAAGTGagaggggctcctgtactagttgagaaaataggcttttggaatgaagcagatctgggtttgagtgttgtctct-actgtccactgtcactgaactctgcgcctcagcttccccatctattaaat-ggggataataaacatatttatcctatagagattttgtgaagcttaagtgagattatctac i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80789554 591 + 112612857 GATCAAACAATTATATGCAAAATAGAAAATTTACT---C----TGAGTTTTTACTTAAGTATAGTGATTCTG-TT-CCCATAGGTGGCAATAC----------------------------------------------------------------------ACAATGTCACCTTAAGGTTGTAAATCATATTTTAAATTTTGAGGG-GATCTCTTTAGGGTTTTGAGGTTTTGTATTTT------------CCTATG--ACTT---AGAACATATGACATGAATCGAAGGCAATTCTAAAACTTTGAAATACTCCATAAGTATCTGGAAAAAGGAGCACCAGTTTGATTGTTGCTGAAAA----------CTTGTTTGGTTGAAAATAGTGTTTTGAGGTTTCAACTGGATATATAACTGTC--TGAATTTTTAGTTAAGTAATGTGATGGAATGCATCAGATATTTAACACCATCTGTGATCAAGAAGTCAAAAAAA-----GAATATAAGACCCAAGTGagaggggctcctgtactagttgagaaaataggcttttggaatgaagcagatctgggtttgagtgttgtctct-actgtccactgtcactgaactctgcgcctcagcttccccatctattaaat-ggggataataaacatatttatcctatagagattttgtgaagcttaagtgagattatctac i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76838325 594 + 107442819 GATCAAACAATTATatgcaaaatagaaaatttact---C----TGAGTTTGTACTTAAGTATAGTGATTCTG-TT-CCCATAGGTGGCAATAC----------------------------------------------------------------------ACAATGTCACCTTAAGGttgtaaatcatattttaaattttgaggg-GATCTCTTTAGGGTTTTGAGGTTTTGTATTTT------------CCTATG--ACTT---AGAACATATGACATGAATCGAAGGCAATTCTAAAACTTTGAAATACTCCATAAGTATCTGGAAAAAGGAGCACCAGTTTGATTGTTGCTGAAAA----------CTTGTTTGGTTGAAAATAGTGTTTTGAGGTTTCAACTGGATATATAACTGTCTTTGAATTTTTAGTTAAGTAATGTGATGAAATGCATCAGATATTTAACACCATCTGTGATCAAGAAgtcaaaaaaa-----gaatataagacCCAAGTGAGAGGGGCTCCTGTACTAGTTGAGAAAATAGGCTTTTGGAATGAAGCAGATCTGGGTTTGAGTGTTGTCTCT-ACTGTCCACTGTCACTGAACTCTgcgcctcagcttccccatctatTAAATGGGggataataaacatatttatccTATAGAGATTTTGTGAAGCTTAAGTGAGATTATctac i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81102223 593 + 108555830 GATCAAACAATTATATGCAAAATAGAAAATTTACT---C----TGAGTTTGTACTTAAGTATAGTGATTCCG-TT-CCCATAGGTGGCAATAC----------------------------------------------------------------------ACAATGTCACCTTAAGGTTGTAAATCATATTTTAAATTCTGAGGG-GATCTCTTTAGGGTTTTGAGGTTTTGTATTTT------------CCTATG--ACTT---AGAACATATGACATGAATCAAAGGCAATTCTAAAACTTTGAAATACTCCATAAGTATCTGGAAAAAGGAGCACCAGTTTGATTGTTGCTGAAAA----------CTTGTTTGGTTGAAAATAGTGTTTTGAGGTTTCAACTGGATGTATAACTGTCTTTGAATTTTTAGTTAAGTAATGTGATGAAATGCATCAGATATTTAACACCATCTGTGATCAAGAAGTCAAAAAAA-----GAATATAAGACCCAAGTGagaggggctcctgtgctggttgagaaaataggcttttggaatgaagcagatctgggtttgagtgttgtctct-actgtccacagtcactgaactctgcgcctcagcttccccatctattaaat-gcggataataaacatatttatcctatagagattttgtgaagcttaagtgagattatctac i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111322012 654 - 210400635 GATCACACAATTATATGCAAAATAGAAAATTCA-----C----TGAGTTTGTAGTTACATATAATGATTCTG-TT-CCCATAGGTGGCAATACTTTAAACAATGTCACCTTAAGGTTGTAAATCATATTTTAAATTTTGTTCCCATAGGTGGCAATACTTTAAACAATGTCACCTTAAGGTTGTAAATCATATTTTAAATTTTGGGGGTAATCTCTTTAGGGCTTTGAAGTTTTTCATGTT------------CCTATGGAACTTCAAAGAACAAACAACATGAATCTAAGACAATTCTAAAACTCTGAAATACTCCATAAGTACCTGGAAAAAGGAGCACCAGT----TTGTTGCTGAAAA----------CTCGTTTGGGTGAAAATAGTG-TTTGAGGTTTCAACTGGATGTGTAACTGTCTTTGAATTTTTAGTTAAATAATGTGATGAAATTCATCAGATATTTAGCACCATCTGTGATCAAGGAGTCAAA---------CAATATAACACACAagggagaaagtgtcctgtactggatgaaaaaataggctttgggaataaagcagatctgggttggactattgtctct-actgcccagggtcacggaactctgcacctcagcttccccatctattaaat-ggggataataaaca----tatcctctagagattttgtgaagcttaaatgagatgatctac i calJac3.chr1 C 0 C 0 s mm10.chr19 37980441 529 - 61431566 GACCATAAAATTATATACTGGGAGGAAATTTGACTTCCC----CAAGTTTGTGCTAGTGACTAATGATACTGTTT-TCCATAG--------------------------------------------------------------------------------GTAGTGTGGCCTTAAGGTTTTAAATCATGTTTTAATTATTTGGCT--ATCTTCCCAGGGCTTTTGGCATTTTTTTTTTGAAATTTACTTCCTTACA--GCTT---GTGACACACGAGATGAATTGA--------CTA----TTTCAAATATTTTACAAGTACTTGAGCAAAGCAGCACCAGTTTGATAGTAGCTTGTGATTGACAGTGGCTTGTGAAGCTGAAAGCAGT--CTTGAAG-TTCAAATGGATTCACAGCTGTCTCTGAATGTCT-----------------GTATCCATCAGA----GGGTGTCATCTCTGAGCAAGAAGCCAAAGTG------GAAGGTAAG------GTGAAGGAGGCACCTCAGCTGG--------------------------------CTGGGTT--AGTCTTGTCTCC-TCCACCTGTTGTCACTGGACTTTTTACCTCAGTTTCTCCATCCATTAAAC-GGGGCTTATTGCACTAgtcaacttgc--tgttgttgcaacaaatacctgagatgatcaac i mm10.chr19 I 3 I 669 s canFam3.chr1 35224461 588 - 122678785 GATCATGCAATTATATGTGAAATCGAAATTTTACT---CCCATTAACTCTGTGCATATGTGTAAGGATTCAG-TTGCCCATAGGTGGCAATAA----------------------------------------------------------------------ATGATGTTGCCTGAAAGTTTTAACTCGTCTTTAAAACCTTTGAAT--ATCTCTTTATGGCTCAGAAGTTTTTCATTTT------------CTTAAG--ACTT---GGAACATGCAA-ATGAATCTAAGGCAATCCTGAAAC--TGAAATATTCTGCAGGTACCTGGAGAAGGGAGCCCCAGTTTGAGAGTTGCTGGAAG----------CTTGCTTGGCTAGAAATAGTGATTTGAAGTTTCAAGTGGATTCATATCTGTCTTTGAATTTTTAATTGAGTAATTGGATGAAATTCATCAGATATTTAGTTCCATCCATGAACAAGAAATAAAAAAAA-----GAATATAAAACAAAGGAGACAGA-------TTACCATTTGagagaatagacttttagaagaaagcagatgtagttttaagtcttctctctgactcttgctattcactggactctgcacctcagtctccccatatattaagt-gggaacaattatgatattgacctcatagagtccttgtgaaaattgaataagattttcgat i canFam3.chr1 C 0 C 0 a score=1251316.000000 s hg38.chr9_GL383541v1_alt 17355 423 + 171286 ataaaacatttataatggtaaacacaataaatgtt----ATTATTAGCTACTACCTGAGGCAAAGCATATAAATAAAAAAAGATACATATACACCAAATAGCAC----------ACACTAATGAATAAATTTTTGACCATTTGAATCATTGTTTACAGAAAACACATGAAAATTTGTTCCTACCT-TT-AAAAAAGGATTCCAGATATATTTTCCTTATTAGGGAGAAGGTTACTA-ATTTTCTAATACTgaaagtgacatctgagtgaagacctcattaggcggtg----------------agttgtgtggctctttgtggaagagcattttgagcagaaagaacagccagtgcaaaattctgaaaggatagctggactgtgtttgaggatcagccaagaggtctgtgtggctagagaagagtaagcagggtgattgaagtcagagaaataaga s panTro4.chr9 68582871 422 + 137840987 ataaaacatttataatggtaaacacaataaatgtt----ATTATTAGCTACTACCTGAGGCAAAGCATATAAATTAAAAAAAA-ACATATACACCAAATAGCAC----------ACACTAATGAATAAACTTTTGACCATTTGAATCACTGTTTACAGAAAACACATGAAAATTTGTTCCTACCT-TT-AAAAAAGGATTCCAGACATATTTTCCTTATTAGGGAGAAGGTTACTA-ATTTTCTAATACTgaaagtgacatctgagtgaagacctcattaggcagtg----------------agttgtgtggctctttgtggaagagcattttgagcagaaagaacagccagtgcgaaattctgaaaggatagctggactgtgtttgaggaccagccaagaggtctgtgtggctagagaagagtaagcagggtgattgaagtcagagaaataaga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64735926 423 + 135191526 ataaaacatttataatggtaaacacaataaatgtt----ATTATTAGCTACTACCTGAGGCAAAGCATATAAATAAAAAAAAT-ACATATACACCAAATAGCAC----------ACACTAATGAATAAATTTTCGACCATTTGAATCATTGTTTACAGAAAACACATGAAAATTTGTTCCTACCT-TT-AAAAAAGGATTCCAGACATATTTTCCTTATTAGGGAGAAGGTTACTACATTTTCTAATACTgaaagtgacatctgagtgaagacctcattcagcagtg----------------agttgtgtggctctttgtggaagagcattttgagcagaaggaacagccagtgcgaaattctgaaaggatagctggactgtgtttgaggaccagccaagaggtctgtgtggctagagaagagtaagcagggtgattgaagtcagagaaataaga i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57776615 429 - 122973662 ataaaatatttaTAATGGTAAACAC----AATGTT----ATTATTAGCTACTACCTGAGGCAAAGCATATAAATAAAAAAAAT-ACATATACACCAAATAGCATGAATACATGAATACTAATGAATACATTTTCGACCATTTGAATCATTGTTTACAGAAAACACATGAAAATTTGTTCCTACCT-TT-AAAAAAGAATTCCAGACATATTTACCTTATTAGGGAGAAGGTTACTACATTTTCTAATACTgaaagtgacatctgaatgaagacctcattaggcagtg----------------agttgtgtggctcttggtggaagagcattttgagcagaaggaacagccagcatgaaattctgaaaggatacctggactgtgtttgaggaccagccgagaggtctgtgtggctagagaagagtaagcagggtggttgaagtcagagaaataaga i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79709303 382 + 112192347 ataaaacatttataatggcaaacacaataaatgtt----ATCATTA-CTACTACCTGAGGC-----------------------AC----------------------------ACATTAATGAAAAAATTTTAGATCATTTGAATCATTGTTTACAGAAGACACATGAAAATTTGCTCCTACCT-TT-AAAAAAGGATTCCAGACATATTTTGCTTATTAGGGAGAAGGTTACTAAATTTTCTGATACTgaaagtgacatctgagtgaagacctcattaggcagtg----------------agctgtgtggctctttgtggaagagcattttgagcagaaggaacagccagtgcgaaattctgaaaggatagctggactgtgtttgaggacaagccaagaggtccgtgtggctagagaggaataagcagggtggttgaagtcagagaaataaga i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80790145 382 + 112612857 ataaaacatttataatggcaaacacaataaatgtt----ATCATTA-CTACTACCTGAGGC-----------------------AC----------------------------ACATTAATGAAAAAATTTTAGATCATTTGAATCATTGTTTACAGAAAACACATGAAAATTTGCTCCTACCT-TT-AAAAAAGGATTCCAGACATATTTTGCTTATTAGGGAGAAGGTTACTAAATTTTCTGATACTgaaagtgacatctgagtgaagacctcattaggcagtg----------------agctgtgtggctctttgtggaagagcattttgagcagaaggaacagccagtgcgaaattctgaaaggatagctggactgtgtttgaggacaagccaagaggtccgtgtggctagagaggaataagcagggtggttgaagtcagagaaataaga i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76838919 382 + 107442819 ataaaacatttataatggCAAACACAATAAATGTT----ATCATTA-CTACTAACTGAGGC-----------------------AC----------------------------ACACTAATGAAAAAATTTTAGATCATTTGAATCATTGTTTacagaaaacacatgaaaatttgcTCCTACCT-TT-AAAAAAGGATTCCAGACATATTTTGCTTATTAGGGAGAAGGTTACTAAATTTTCTGATACTGAAAGTGACATCTGAGTGAAGATCTCATTAGGCAGTG----------------AGTTGTGTGGCTCTTTGTGGAAGAGCATTTTGAGCAGAAGGAACAGCCAGTGTGAAATTCTGAAAGGATAGCTGGACTGTGTTTGAGGACAAGCCAAGAGGTCCGTGTGGCTAGAGAGGAATAAGCAGGGTGGTTGAAGTCAGAGAAATAAGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81102816 383 + 108555830 ataaaacatttataatggcaaacacaataaatgtt----GTCATTAGCTACTACCTGAGGC-----------------------AC----------------------------ACACTAATGAAAAAAATTTAGACCATTTGAATCATTGTTTGCAGAAAACACATGAAAATTTGCTCCTACCT-TT-AAAAAAGGATTCCAGACATATTTTGCTTATTAGGGAGAAGGTTACTAAATTTTCTGATACTgaaagtgacatttgagtgaagacctcattaggtagtg----------------agctgtgtggctctttgtggaagagcattttgagcagaaggaacaaccagtgcgaaattctgaaaggatagctggactgtgtttgaggacaaaccaagaggtccgtgtagctagagaggaataagcagggtggttgaagtcagagaaataaga i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111322666 410 - 210400635 ataaaacatttaTAATAATAAATGCAACAAATGCT----ATTAT---CTACTACCTGAGGCaaaatataaattttaa-------aaatatGTACCAAATACCAT----------ACACTAAT----AAAATTTAGGTCATTTGAATCACTGTTTACAGAAAATGCATGAAAATTTGTTCTAACCT-TTAAAAAAAGGATTCCAGAC-TATTTTCCTTTTTGGGGAAAAGATTATTAAATTTTCTGATACTCaaagtgacctgtgagtgaagacctcattaggcagtg----------------agttgtgtggctctttgtggaagaccattttgagcggaaggaacagccagtgcaaaattctgaatggatagctggactgtgtttgaggaccagccaagaggtccacgtggctagagaggagtaagcaggatggttgaagtcagagaagtaaga i calJac3.chr1 C 0 C 0 s canFam3.chr1 35225049 414 - 122678785 ataaaatatttaTGATCTTAAGCACGATAAATGTTCTTCATTATCAGATACCACCTGAGGCAAAGCATATAAACAC--------AC----------------------------ACACGACTAAACAAATTTTAGTACCTTTGGGTTATTCCTACCAGAAAACTCATGAGAATTTGTCCAAGCTTATT-TTAAAAGGATCCGGGG--TTTTTTTCTTATTAGAAAGAAGGCTAGTGGA-TTTCTAATACTgaaggtgacaagggaataatgacatga--aggtagtgtgggtgggtgggtggaagtcatgtggatctccaaggaagaggatttcaagctgagggaatggccagtgcaaagttctggaaagacaggtaccttgtatctgaggatcagccaagaggtcgatgtggctggagaggtgtaagcagggcaaatgaggtcagagatgtaagg i canFam3.chr1 C 0 C 0 e mm10.chr19 37980970 669 - 61431566 I a score=38772.000000 s hg38.chr9_GL383541v1_alt 17778 14 + 171286 -gggtggggctgggt s panTro4.chr9 68583293 14 + 137840987 -gggtggggctgggt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64736349 14 + 135191526 -gggtggggctgggt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57777044 14 - 122973662 -gggtggggctgggt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79709685 14 + 112192347 -gggtggggccaggt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80790527 14 + 112612857 -gggtggggccgggt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76839301 14 + 107442819 -Gggtggggccgggt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81103199 14 + 108555830 -gggtggggctgggt i chlSab2.chr12 C 0 C 0 s canFam3.chr1 35225463 14 - 122678785 ggggtggggcaggt- i canFam3.chr1 C 0 I 213 e mm10.chr19 37980970 669 - 61431566 I e calJac3.chr1 111323076 0 - 210400635 C a score=635000.000000 s hg38.chr9_GL383541v1_alt 17792 262 + 171286 gcagtggctcacgcctgtaatcgcagcacttcgggagtccgaggcaggtggatcatgatgtcaagagattgaaaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtgtcacacgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggtggactttgcagtgaacagagatc--------gcactccagcctggtgacagggtgggattctgtct s panTro4.chr9 68583307 262 + 137840987 gcagtggctcacgcctgtaatcgcagcacttcgggagtccgaggcaggtggatcatgaggtcaagagattgaaaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggcacacgcctgtaatcccagctacttgggaggctgaggcaggagacttgcttgaacctgggaggtggactttgcagtgaacagagatc--------gcactccagcctggtgacagagtgggattctgtct i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64736363 270 + 135191526 gcagtggctcacgcctgtaatcccagcactttcggaggccgaggcaggtggatcccgaggtcaagagattgaaaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggcacacgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggtggacgttgcagtgaacagagatcgcaccactgcactccagcctggtgacagagtgggattctgtct i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57777058 270 - 122973662 gccatggctcacacctgtaatcccagcactttgggaggccgaggcaggtggatcacaaggtcaagagattgaaaccatcctggccaacatggtgaaaccctatctctactaaaaatacaaaaattagctgggcgtggtggcacatgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggtggacattgcagtgaacggagattgcaccactgcactccagcctggtgacagagtaagattctgtct i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79709699 270 + 112192347 gcagtgactcacacctgtaatcccagcactttgggaagccaaggcgggtggatcacaaggtcaagagattgaaaccatcctggccaacatggtgaaaccctgtcactactaaaaatacaaaaattagctgggcatggtggcacgcacctgtaatcccagctacctgggaagctgaggcaggagaattgcttgaacctgggagatggacgttgcagtgagtggagatcgcgccactgcactccagcctggtcacagagtgagactctgtct i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80790541 270 + 112612857 gcagtgactcacacctgtaatcccagcactttgggaagccaaggcgggtggatcacgaggtcaagagattgaaaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcatggtggcacgcacctgtaatcccagctacttgggaagctgaggcaggagaattgcttgaacctgggagatggacgttgcagtgagtggagatcgcgccactgcactccagcctggtgacagagtgagactctgtct i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76839315 270 + 107442819 gcagtgactcacacctgtaatcccagcactttgggaagccaaggcgggtggatcacgaggtcaagagattgaaaccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggcacgcacctgtaatcccagctacttgggaagctgaggcaggagaattgcttgaacctgggagatggacgttgcagtgagtggaggtcgcgccactgcactccagcctggtgacagagtgagactctgtct i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81103213 270 + 108555830 gcagtggctcacacctgtaatcccagcactttgggaagccaaggtgggtgaatcacgaggtcaagagattgaaaccatcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcatggtggcacgtgcctgtaatcccagctacttgggaagctgaggcaggagaattgcttgaacctggcagatggacgttgcagtgagcggagatcgcaccactgcacaccagcctggtgacagagtgagactctgcct i chlSab2.chr12 C 0 C 0 e mm10.chr19 37980970 669 - 61431566 I e canFam3.chr1 35225477 213 - 122678785 I e calJac3.chr1 111323076 0 - 210400635 C a score=79780.000000 s hg38.chr9_GL383541v1_alt 18054 40 + 171286 caaaaaaagaa--------aaagaaggaaagcaagaaaag-----aaagaaaa s panTro4.chr9 68583569 40 + 137840987 caaaaaaagaa--------aaagaaggaaagcaagaaaag-----aaagaaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64736633 40 + 135191526 caaaaaaagaa--------aaagaaggaaagcaagaaaag-----aaagaaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57777328 44 - 122973662 caaaaaaagaaaaag----aaagaaggaaagcaagaaaag-----aaagaata i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79709969 47 + 112192347 caaaaaaagaaaa------agagaaggaaagcaagaaaagaaaacaaagaaga i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80790811 47 + 112612857 caaaaaaagaaaa------agagaaggaaagcaagaaaagaaaacaaagaaga i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76839585 47 + 107442819 caaaaaaagaaaa------agagaaggaaagcaagaaaagaaaacaaagaaga i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81103483 47 + 108555830 caaaaaaacaaaa------agagaaggaaagcaagaaaagaaaacaaagaaga i chlSab2.chr12 C 0 C 0 s mm10.chr19 37981639 44 - 61431566 cagaaacaaaccaagtgttgagggctgacaacgaggagat------aaga--- i mm10.chr19 I 669 C 0 e canFam3.chr1 35225477 213 - 122678785 I e calJac3.chr1 111323076 0 - 210400635 C a score=44375.000000 s hg38.chr9_GL383541v1_alt 18094 13 + 171286 gggtggagcaggt s panTro4.chr9 68583609 13 + 137840987 gggtggagcaggt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64736673 13 + 135191526 gggtggagcaggt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57777372 13 - 122973662 gagtggagcaggt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79710016 13 + 112192347 gggtggagcaggt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80790858 13 + 112612857 gggtggagcaggt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76839632 13 + 107442819 gggTGGAGCAGGT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81103530 13 + 108555830 gggtggagcaggt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111323076 13 - 210400635 gggtggagcaggt i calJac3.chr1 C 0 C 0 s mm10.chr19 37981683 3 - 61431566 ----------ggt i mm10.chr19 C 0 C 0 e canFam3.chr1 35225477 213 - 122678785 I a score=1758928.000000 s hg38.chr9_GL383541v1_alt 18107 517 + 171286 cctatagggcctggttggtcatcgtgaagactttggactttactaaatgacttgggaacttgttg--ggtcttgagctaaggag-tg-------acatggcccaatttctgtattaaaaggataaccctgactagtgtgttcagaatagagta-g-ggtgggcagggcagaaaatgaagggag-accgtggtcaggaggccactgcggtatcccaggttgatggcaagggcagcttggaccaaccaaggcatcaccaccatgggcacagagcatggtcagcatctgctgtgttttgaatcctgagctgatagaaattggcaatgtct-gacaggaacggatgagct---gaagatgcctccaag---------ttttctctcctgaacaactggaggaaaatagttctttt-actgagat-gaggaagaca-caggggacgggcaggtttggcaagaaatatgcagccttcatgttgggacctgttaagtatgaaatagctctgaagcatccgattgga-aatgttgaggtggcaatgagatcgaag s panTro4.chr9 68583622 517 + 137840987 cctatagggcctggttggtcatcgtgaagactttggactttactaaatgacttgggaacttgttg--ggtcttgagctaaggag-tg-------acatggcccaatttctgtattaaaaggataaccctgactagtgtgttcagaatagagta-g-ggtgggcagggcagaaaatgaagggag-accgtggtcaggaggccactgcggtatcccaggctgatggcaagggcagcttggaccaaccaaggcatcaccaccatgggcacagagcatggtcagcatctgctgtgttttgaatcctgagctgatagaaattggcaatgtct-gacaggaacggatgagct---gaagatgcctccaag---------ttttctctcctgaacaactggaggaaaatagttctttt-actgagat-gaggaagaca-caggggaggggcaggtttgggaagaaatatgcagccttcatgttgggacctgttaagtatgaaatagctctgaagcatccgattgga-aatgttgaggtggcaatgagatcgaag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64736686 519 + 135191526 cttatagggcctggttggtcattgtgaagactttggactttgctaaatgacttgggaacttgttg--ggtcttgagctaaggag-tg-------acatggcccaatttctgtattaaaaggataaccctgactagtgtgttcacaatagagta-g-ggtgggcagggcagaaaatgaagggag-accatggtcaggaggccactgtggtatcccaggctgatggcaagggcagcttggaccaaccaaggcatcaccaccacgggcacggagcatggtcagcatctgctgtgttttgaatcctgaactgatagaaattggcaatgtct-gacaggaacagatgagct---gaagatgcctccaag---------ttttctctcccgaacaactggaggaaaatagttcttttaactgagat-gaggaagacgccagaggaggggcaggtttgggaagaaatatgcagccttcatgttgggacctgttaagtatgaaacagctctgaagcatccagttgga-aatgttgaggtggcaatgagatcgaag i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57777385 518 - 122973662 cttatagggcctggttggccattgtgaagactttggactttactaaatgacttgggaactcgttg--ggtcttgagctaaggag-ta-------acatggcccaatttctgtattaaaaggataactctgactagtgtgttcagaatagagta-c-ggtgggcaggacagaaaatgaagggag-accgtggtcaggaggccactgcagtatcccaggctgatggtgagggcagcttggaccaaccaaggcatcaccaccacaggcacggagcatggtcagcatctgctgtgttttgaatcctgaactgatagaaattggcaatgtct-gacaggaacagatgagct---gaagatgcctccaag---------ttttctctcctgaacaactggaggaaaatagttcttttaactgagat-ggggaagacg-caggggaggggcagttttgggaagaaatatgcagccttcgtattgggacctgttaagtatgaaatagctctgaagcatccaattgga-aatgttgaggtggcaatgagatcgaag i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79710029 519 + 112192347 cttatagggcctggttggtcatcatgaggactttggactttactaaatgacttgcgaacttgttg--ggccttgagctaaagag-tg-------acgtggcccaatttctgtattaaaaggataaccctgactagtgtgttcagaatagagta-g-ggtgagcagggtagaaaatgaagggag-accgtggtcaggaggccactgcagtgtcccaggctgatggtgagggtatcttggaccaaccaagacatcaccaccacgggcgcggagcatggtcagcatctgctgtgtttcgaatcctgaactgatagaaattggcaatgtct-gacaggaacagatgagct---ggagatggctccaag---------ttttctctcctgagcaactggaagaaaatagttcttttaactcagatgggggaagacg-caggggaaggacgggtttgggaagaaacatgcagccttcatgttgggacccgttaagtatgaaatagctctgaagcatccaattgga-aatgttgaggtggcaatgagatcgaag i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80790871 519 + 112612857 cttatagggcctggttggtcatcatgaggactttggactttactaaatgacttgcgaacttgttg--ggccttgagctaaagag-tg-------acgtggcccaatttctgtattaaaaggataaccctgactagtgtgttcagaatggagta-g-ggtgagcagggtagaaaatgaagggag-accgtggtcaggaggccactgcagtgtcccaggctgatggtgagggtatcttggaccaaccaagacatcaccaccacgggcgcggagcatggtcagcatctgctgtgtttcgaatcctgaactgatagaaattggcaatgtct-gacaggaacagatgagct---ggagatggctccaag---------ttttctctcctgagcaactggaagaaaatagttcttttaactcagatgggggaagacg-caggggaaggacgggtttgggaagaaacatgcagccttcatgttgggacccgttaagtatgaaatagctctgaagcatccaattgga-aatgttgaggtggcaatgagatcgaag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76839645 518 + 107442819 CTTATAGGGCCTGGTTGGTCATCATGAGGACTTTGGACTTTACTAAATGACTTGCGAACTTGTTG--GGCCTTGAGCTAAAGAG-TG-------ACGTGGCCCAATTTCTGTATTAAAAGGATAACCCTGACTAGTGTGTTCAGAATAGAATA-G-GGTGAGCAGGGTAGAAAATGAAGGGAG-ACCGTGGTCAGGAGGCCACTGCAGTGTCCCAGGCTGATGGTGAGGGTATCTTGGACCAACCAAGACATCACCACCACGGGCGTGGAGCATGGTCAGCATCTGCTGTGTTTCGAATCCTGAACTGATAGAAATTGGCAATGTCT-GAGAGGAACAGATGAGCT---GGAGATGGCTCCAAG---------TTTTCtctcctgagcaactggaagaaaATAGTTCTTTTAACTCAGAT-GGGGAAGACG-CAGGGGAAGGACGGGTTTGGGAAGAAATATGCAGCCTTCATGTTGGGACCCGTTAAGTATGAAATAGCTCTGAAGCATCCAATTGGA-AATGTTGAGGTGGCAATGAGATCGAAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81103543 519 + 108555830 cttatagggcttggttggtcatcatgaagactttggactttactaaatgacttgggaacttgttg--ggccttgagctaaagag-tg-------acatgacccaatttctgtattaaaaggataaccctgactagtgtgttcagaatagagta-g-ggtgagcagggtagcaaatgaagggagaaccatggtcaggagaccactgcagtgtcccaggctgatggtgagggtatcttggaccaaccaagacatcaccaccacgggtgcggagcgtggtcagcatctgctgtgtttcgaatcctgaactgatagaaattggcaacgtct-gacaggaacagatgagct---ggagatgcctccaag---------ttttctctcctgagcaactggaagaaaatagttcttttaactcagat-ggggaagacg-caggggaaggatgggtttgggaagaaatacgcaggcttcatgttgggacctgttaagtatgaaatagctctgaagcatccaattgga-aatattgaggtggcaatgagatcgaag i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111323089 519 - 210400635 cttataggacctagtttgtcattgtgaagactttggactttgctaaatgactttggaacttgttg--ggtcttgagccaaggaacca-------acgtggcccaatttctgtattaaaaggataaccctgactagtgtgttaagaatggagtagg-ggcaagcaaggcacaaaatgaaggaag-actgtggtcaggagggcactgcagtatcccaggctgatggtgagggcaatgtgcaccaaccaaggcatcaccaccatgggtacggagcatggtcggcatctactgtgttttgaattctgaactgatagaaattggcaatgtct-gaaaagaacagataagct---gaggatgcctccacg---------ttttctctcctgagcaactggaggaaagtagttcttttaactgagat-ggggaagatg-caggggaagggcaggtttgggaagaaatatgcagccttcatgttggaacctgttaagtatgaaatagctctgaagcatcc-cttgaa-aatgttgaggtggcaatgagattgaag i calJac3.chr1 C 0 C 0 s mm10.chr19 37981686 493 - 61431566 TTGGCTAGATGTGACAGGTCCTTGTGAAGAATTTGGATTTCGGTAAATGATATGGGAACTTGTGG--CTTCTTGGGAAAAGGCT--------------------ATTTTTGTATTGAGGGGA-AGCCCTTACAACTCTAGTTAGAAGGCAGTG-T-GGTAGGCAAGGCTTAAGAAGGGAAAAG-AGCAGGATGATGAGGCCACTGTGGTATCCCAGGGCAGTAAACATGCCAGCAGCGACCAATCAGGGCCT---GAATATGAACATGGAGCA-GGTGGGTACCTGGTGTGATGTCAGTCCGGAACAGGCAAGATTTGGCATTGTCT---TGGGAAGAGGAGAGCTTTCGGGCCTGACTCTAAATTCTCAAGTTTTTCTGTCATCAGCAATTG---GAAAACAACGCTGTTAACTAAGGT-GGAAAAGAGG-------------AAGTTTGAC----ATTGTGAACCATTCTCCTTGAGACCTGTTAAGTCCAAGACAACTTGCAAGCATCCACTCGGATAATGGTCAGGTGATAGTGAGACAGAAG i mm10.chr19 C 0 I 31 s canFam3.chr1 35225690 476 - 122678785 cccactgagccacccaggtgcccccaaagac-tgggttttgatttgctggtttgagagtctgttgcaaatctgaagctaagcaa-tgacctgccacatggcctgacttctgtcctaaacggat-gtcctgatggctgcattaggaatggagtg-gaggtgggcaaagcaggagaggcagggac-actgcccttcggaggtc-ctgtagtctcccc--ctgccaacaa------tttag----atcagggca--gccactgggggcacagagcatgctcagcatctgctgtgttttga--ccggaatggacagaattgggtactgtcttgagagaaagagaagagtc---agggatacctcgatgtgatg----ttttttttcctgagcaagcgggggagaaaggttcctttaactgagat----aaaaatg-caagaggagg-caggcttgggagggactcccagg--ttcatgttgcgacctgt--------------------------------ga-aatg-tgaggtggcagtgagggagagg i canFam3.chr1 I 213 C 0 a score=165945.000000 s hg38.chr9_GL383541v1_alt 18624 45 + 171286 agtctggcgttagtgagtagtctgggttagaaatataaatgtggg s panTro4.chr9 68584139 45 + 137840987 agtctggcgttagtgagtagtctgggttagaaatataaatgtggg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64737205 45 + 135191526 agtctggcgttagtgagcagtctgggctagaaatataaatgtggg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57777903 45 - 122973662 agtctggcattagtgagcagtctgggctagaaatataaatgtgag i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79710548 45 + 112192347 agtctggcgttagtgagcagtctgcgctagaaatataaatgtggg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80791390 45 + 112612857 agtctggcgttagtgagcagtctgggctagaaatataaatgtggg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76840163 45 + 107442819 AGTCTGGCGTTAGTGAGCAGTCTGGGCTAGAAATATAAATGTGGG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81104062 45 + 108555830 agtctggcgttagtgagcagtctgggctagaaatataaatgtggg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111323608 45 - 210400635 agtctggcgttcgtgagctgtctggactagaaatagaaatgcagg i calJac3.chr1 C 0 C 0 s canFam3.chr1 35226166 45 - 122678785 agcctggagtcagtaagcagtctgggctagaaatgtaaattcggg i canFam3.chr1 C 0 C 0 e mm10.chr19 37982179 31 - 61431566 I a score=1577055.000000 s hg38.chr9_GL383541v1_alt 18669 496 + 171286 agttatcaggc--tatcat--------tggtatcta-----aaactatgagacttgagg-acagcattgaggggctggatagagaaagaaacaggag-tgacagggaagaacttggaggcactctcatgttaaggggttac---agaggtaac-gcaaag-aggccga--gaagcggcggccaatgaaagacca-------ggaaacccagc--ggtctggaagccagg-tgaagGCATGGGAGCAGGTTGAACTGATGGCTCAACTGGAGTTTGTTAGGCcagtggtcctcaaagtattgttccaaac------ccgctgcggcagcagcagcctctggaaacttattagggac----gtgcagcctc-tcagg--cccactccagagctactggatcggaaacg--gagggtgaggcccttcagcaga-ttctgatgcaccctcaggttttaaaacca---ctgCCCTCCTCACAAAATTGCCTGCACAAAATTATAA--ATGGGAGAAaggaggaggaggaggaggaagaggagg----ggaggaagaagaA s panTro4.chr9 68584184 497 + 137840987 agttatcaggc--tatcat--------tggtatcta-----aaactatgggacttgagg-acagcattgaggggctggatagagaaagaaacaggag-tgacagggaagaacttggaggcactctcatgttaaggggttac---agaggtaacagcaaag-aggccga--gaagcggcggccaatgaaagacca-------ggaaacccagc--ggtctggaagccagg-tgaagGCATGGGAGCAGGTTGAACTGATGGCTCAACGGGAGTTTGTTAGGCcagtggtcctcaaagtattgtcccaaac------ccgctgcggcagcagcagcctctggaaacttattagggac----gtgcagcctc-tcagg--cccactccagagctactggatcggaaacg--gagggtgaggcccttcagcaga-ttctgatgcaccctcgggttttaaaacca---ctgCCCTCCTCACAAAATTGCCTGCACAAAATTATAA--ATGGGAGAAaggaggaggagaaggaggaaaaggagg----ggaggaagaagaA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64737250 488 + 135191526 agttatcaggc--tatcat--------tggtatcta-----aaactatgagacttgagg-acagcattgaggggctggatagagaaagaaacaagag-tgatagggaagaacttggaggcactctcgtgttaaggggttac---agaggtaacagcaaag-aggccga--gaagcgcgggccaatgaaagacca-------ggaaacccagc--catctggaagccagg-tgaagGCATGAGGGCAGGTTGAACTGATGGCTCAACAGGAGTTTGTTAGGTcagtggtcctcaaagtattgtcccaaac------ccgctgcagcagcagcagcctctggaaacttattagggac----gtgcagcctc-tcagg--cccactccagagctactggatcggaaacg--gagggtgaggcccttcagcaga-ttctgatgcaccctcaggttttaaaacca---ctgCCCTCCTCACAAAATTGCCTGCACAAAATTATAA--ATGGGAGAAAGG---------AGGAGGAAGGGGAGG----GGAGGAAGAAGAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57777948 487 - 122973662 agttatcaggc--tatcat--------tgctatcta-----aaactatgagactggagg-aaagcattgagggtctggatagagaaagaaacaggag-tgatagggcagaacttggaggcactctagtgttaaggggttac---agaggtaacagcaaaa-aggccga--gaagaagcggctaatgaaagacca-------ggaaacccagc--gatctggaagccagg-tgaagGCATGGGAGCAGGCTGAACTGATGACTCATCAGGAGTTTGTTAGGCcagtggtcctcagagtattgacccaaac------ccgctgcagcagcagcagcctctggaaacttattagggac----gtgcagcctc-tcatg--cccactccagagctactggatcggaaatg--gaaggtgaggcccttcagcaga-ttctgatgcaccctcaggttttaaaacca---ctgCCCTCCTCACAAAATTGCCTGCACAAAATTATAA--ATGGgagaaaggagg------aagaggaagaggag--------ggaagaagaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79710593 493 + 112192347 agttatcaggc--tatcat--------tggtatcta-----aaactatgagactggaag-aaagcattgaggggctggatagtgaaagaaataggag-tgatagggtagaacttggaggcactctcgtcctaaggcgttac---agaggtaacagcaaag-aggctga--gaagaagcggccaa-gaaagaca--------ggaaacccagc--ggtctggaagccagg-tgaagGCATGGGAGCAGGTTGAAATGATGGCTCAACAGGGGTTTGTTAGGCcagtggtcctgaaagtattgtcccagac------cagctgcagcagcagcagcctctggaaacttattagggac----gtgcagcctc-tcaga--cccactccagagctactggatcagaaacg--gaaggtgaggctcttcagcaga-ttctgatg--cagtcaggttttaaaacca---ctgCCCTCCTCACAAAATTGCCTGCACAAAATCATAA--ATGGGAGAAaggaggaggaggaggaagaagaggagg----ggaggaagaagaA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80791435 499 + 112612857 agttatcaggc--tatcat--------tggtatcta-----aaactatgagactgg--g-aaagcattgaggggctggatagtgaaagaaataggag-tgatagggtagaacttggaggtactctcgtgttaaggcgttac---agaggtaacagcaaag-aggctga--gaagaagcggccaa-gaaagaccagcggtctggaaacccagc--ggtctggaagccagg-tgaagGCATGGGAGCAGGTTGAAATGATGGCTCAACAGGGGTTTGTTAGGCcagtggtcctgaaagtattgtcccagac------cagctgcagcagcagcagcctctggaaacttattagggac----gtgcagcctc-tcaga--cccactccagagctactggatcagaaacg--gaaggtgaggctcttcagcaga-ttctgatg--cagtcaggttttaaaacca---ctgCCCTCCTCACAAAATTGCCTGCACAAAATCATAA--ATGGGAGAAagggggaggaggaggaagaagaggagg----ggaggaagaagaA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76840208 493 + 107442819 AGTTATCAGGC--TATCAT--------TGGTATCTA-----AAACTATGAGACTGGAAG-AAAGCATTGAGGGGCTGGATAGTGAAAGAAATAGGAG-TGATAGGGTAGAACTTGGAGGCACTCTCGTGTTAAGGAGTTAC---AGAGGTAACAGCAAAG-AGGCTGA--GAAGAAGCGGCCAA-GAAAGACA--------GGAAACCCAGC--GGTCTGGAAGCCAGG-TGAAGGCATGGGAGCAGGTTGAAATGATGGCTCAACAGGGGTTTGTTAGGCCAGTGGTCCTGAAAGTATTGTCCCAAac------cagctgcagcagcagcagcctctgGAAACTTATTAGGGAC----GTGCAGCCTC-TCAGA--CCCACTCCAGAGCTACTGGATCAGAAACG--GAAGGTGAGGCTCTTCAGCAGA-TTCTGATG--CAGTCAGGTTTTAAAACCA---CTGCCCTCCTCACAAAATTGCCTGCACAAAATCATAA--atgggagaaaggaggaggaggaggaagaagaggagg----ggaggaagaagaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81104107 490 + 108555830 aattatccggc--tatcat--------tggtatcta-----aaactctgagactggagg-aaagcattaaggggctggatagtgaaagaaacaggag-tgatagggaagaacttggaggcactcccgtgttaaggagttac---agaggtaacagc--ag-aggctga--gaagaagtggccaa-gaaagaca--------ggaaacccagc--ggtctggaagccagg-tgaagGCATGGGAGCAGGTTGAAATGATGGCTCAACAGGGGTTTGTTAGGCcagtggtcctgaaagtattgtcccaaac------cagctgcagcagcagcagcctctggacacttactagggac----gtgcagcctc-tcaga--cccactccagagctactggatcagaaacg--gaaggtgaggcccttcagcaga-ttctgatgcacagtccggttttaaaacta---ctgCCCTCTTCACAAAATTGCCTGCACAAAATTATAA--ATGGGAGAAa---ggaggaggaggaagacgaggagg----ggaggaagaagaA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111323653 490 - 210400635 agttatcgggc--tatcgt--------tggtattta-----aaactatgagagtggagg-aaagcattgaggggctgaatagagaaagaaataggagatgacaggg-agaacttggaggcactcttatcttaaggggttgc---agagataacagcaaaa-aggccga--gaagaagctgccaatgaaagacca-------ggaaaaccagc--attctggaagccagg-tgaagGCATGGGAGCAGGTAGAACTGATGTCTCAACAGGAGTTAGTTAGGCTaatggtcctcaaagtgttgtcccaaaccagctgcagctgcagcagcagccgcctctggaaacttatcaccaccacaggtgcagcctc-ttagg--cccactccagaactacaggatcagaaatg--gaaggtgaggcccttcagcaga-ttctgatgcaccctcaggttttaaaaccc---ctgCCCTCCTCACAAAATT--------------ATAA--aggggagaaaggaggaggaggagatggaagaggatg----ggag---gaagaA i calJac3.chr1 C 0 C 0 s mm10.chr19 37982210 445 - 61431566 AGTCATCAGCC--TCTGATATATGCGGTGATGTCTA-----AA--TGTGAGGGACGAGGTAAAGCGCCCAGGGAGTGGTCAGAAAAGGCAGCAAGAG--ATTAAGGACGAGCTT-CAGTCAATCCAGTGTCAAGG-GCCAG---GGAGA-AAGGGCATCC-AGGCCCAACAAGACAGCTGCTGT-GGAAGGTAG-------GAAAAACAAGC----TTGAGAGGTCAAACTGAAGACA-GTGAGCAGA--GCTTTGACAGCTGAACAGGAGTGTTTTAGACcagcggtcctcagaaagtgggtccgggc------caacctcag------------ctggaaactgattagaaat----gtacagaatcaggagt--cccaccacagaaatactggatgagggactc-AAACATGGGCCTCTTTAGGGGA---------------------TTAAAAATAAGCCTACTCTAGACACAGAAATGCCTGCACAAGCATACAA--AGGGGATTAAGAAGCAG-----------------------------AAAAAAA i mm10.chr19 I 31 C 0 s canFam3.chr1 35226211 505 - 122678785 agtcatcaggctatatagt--------tggtaggtagttccaaactaggaagctggatg-aaattactgagg---------------gagggaggagataaaaggccagagcttggaagcactccagtgtttagggggtagacaaaaagagaaagcagagtatatgga--gaaggagctgccagtgaagggcca-------ggaaagccaggagaggccagaaactagg-tgaagGTACATGAACAGG--GCTTTGACGGTTGAACAGGAGTTTCTTAGGCcagggctcctccaagtgtggtcccagac------tagcagcatcagcaacagcatccagaaacctgataagaat----gtgcataatc-tttggaccccaacccagatctaccagagcagaaactctgatggcagggccctccgggggggttcagaagcatcctcaagttccagaacca---ctgTCCTAGGCACAAAACTGCCTGCACAAAATTATAAAGATGGTgaagaagaagaggaagaggaagaagaagaagaagaagaggaagaagaa i canFam3.chr1 C 0 I 115 a score=7422161.000000 s hg38.chr9_GL383541v1_alt 19165 2004 + 171286 CTCTTTACAAGAAAAGAATATTGTTGGAGACCCACTTAGTGCCCAAAGCAAACAGC-TTCCTCA-GAAGTAACTCCCT-CCCCAACAACCCCCTCCCAGTGTAAAGCCTCCCATTAATCAATCTATCATGGCTCTTTGGAGAGAAGGAATG-------CCCCCATTTCACCGGACGGAGGGAATGCTGAGCACCAGGCATGCCAGACATTCCACCGGCT-AAAAAAAGT----------------GGGGGTGGTATTCCAGGGTTAGCATTGCTGGACCGTAAACGCTGAAACTCCTTAGATATAAAGCTTATTCCAC-CCAACCGTTTCCAAATTTTCCTCCAGGCTGTCCTTGGAGAATTCCACCCTCTTTCATTCTGGGGAGAAGAAGTTAAAATTAGGGCCAGCCCTGC--------------------------------------------------------------GGGACTGACATGCCAGATGCAGGG-AAGCTGTCCCCAGAAATAAGCGAGTTCCCACCGCGGCTGGGCGGGGCGG-GAGCCTCGGGTCCCAACCCAGCGGAGGGACTCCTGGAAGGCCTGCCCCTTCCAAGTGTCTGCAAGGGCTCTGGTCCCAAGCTTTAAAATCCTGAGCGAAGGCACTGCGGGCCGACCTCTCCTCTCCCAGCCAGTCGTGGCTGGCCTTTC-AAA-GTGTGCAGTTGTCTCCTCCCTGTCCAGCCCCATCGTCGCCCA-------------------GGA-CCAGCT------GGGCCGCGGTCTGACCTGAGGCTGCTGCTCAGCGCCGGGGCGCTGGCGCTCTCCATTCGAGCACCTTC-------------------------------CAGCATACCGCTCGGCTCCGGGAGCCGCTCTGCAAAGTTGGGCAGCTCAGAGCGCAAGCTTTGCCTCTCGACTTCTCCCTCCTTGGGTCCCC---------GGCGCCCCCGCCTCCCACGATCCCTTTCACTAGGAGCAGCCAGTCCCAGCGGGCTGGCAACTTGCACCCCTTCCTAGTCATCCTCCCT----GAAACGCGACCATGCTGTTAAGGGGCGTCCTCCTGGCGTTGCAAGGTAAGGCC-TGGACCCCGGGACAACCCC-----GGGGGCGCTCTGACGACTCGCCCCCGCTCCTGCTGCCCCCGGGGGTCCGGCTCACCGTGCTGG-----GCTGGGCCATCCGAGGGCGCCTCCTGATCCTCCGCAGCCGCTAA-CTCCC----TCCCCTGGCCAAGCCTGGGGTGGGGGTGGGGGTGGGCGTGGGGTCGCTCAGTGGAGGCGCCCGGGGATGCTGGGGGACAGGTACTGCATCC------CTCTCCCGCCCCCTCCCGCTCGTCTTTCCCCCACTTTCACCAGGTAGT-CCCCCTGGGGCTCCCCGAGTTGGTGCAAAGGCTCCT---GGGTGGAGCTCGAACTGAAACTCGCTTTGTGCCCGCAGCCCTGCAGCTCGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTGAAGAGAGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAAATGAGGAAGGTAAGGAGGCTC------------GGTGGAGAGGGG--------CGCGAAGTGAACTTTCTTCCTTGA--TGGCTTGCTTTTTTT---TCCCACATGGG-TAATGTTATCTTGGAGTTAATTCTCCGCGGCAAGAAAA--GTGTGAGTCATGGATCCTCCTTCAAGCCCTCAGCTGTGCTGCAAGGGATGGCCGAGGCAGGAAC-GGGG---CGGGCG--GGAGGCCGCCCTTTGTTTACCTGGCCTATGGGTAGAAGCTTAAAATTTGCGTCTCACCCCAGCACTCCTTAATGGAAGGGAGAAACGGAGCACAGCTAATGATTGTTCTCCGCTGTGGGCCTCTGCAGGCACACCAGCTGTGTG-CCTCTGCAGGCCAGCAACCTTTCTGGTCCTCAGGAGACATGTCTGTGAGTTGGGAAAAGTTG--CAT-GGGACTAGTTCTCCTTCAGCTTTGCAGAAATGGTTCCACAATTCTGTGATGGGACGTCAGTGCTAAGACATCACGTCTGCCTTGACC-------------------CTGACAGTGTT-----------TTTTGCTGCATGATTTCATCCTCACA-----CTCCTGTTTGTA--ATCCTGCCCTGGAC--AAAAGAAACCATGTACACTGCCAAATGCCTGGGGTCCCT- s panTro4.chr9 68584681 1997 + 137840987 CTCTTTACAAGAAAAGAATATTGT-GGAGACCCACTTAGTGCCCAAAGCAAACAGG-TTCCTCA-GAAGTAACTCCCT-CCCCAACAACCCCCTCCCAGTGTAAAGCCTCCCATTAATCAATCTATCATGGCTCTTTGGAGAGAAGGAATG-------CCCCCATTTCACCGGACGGAGGGAATGCTGAGCACCAGGCATGCCAGACATTCCACCGGCT-AAAAAAAGT----------------GGGGGTGGTATTCCAGGGTTAGCATTGCTGGACCGTAAACGCTGAAACTCCTTAGATATAAAGCTTATTCCAC-CCAACCGTTTCCAAATTTTCCTCCAGGCTGTCCTTGGAGAATTCCACCCTCTTTCTTTCTGGGGAGAAGAAGTTAAAATTAGGGCCAGCCCTGC--------------------------------------------------------------GGGACTGACATGCCAGATGCAGGG-AAGCTGTCCCCAGAAATAAGCGAGTTCCCACCGCGGCTGGGCGGGGCGG-GCGCCTCCGGTCCCAACCCAGCGGAGGGACTCCTGGAAGGCCTGCCCCTTCCAAGTGTCTGCAAGGGCTCTGGTTCCAAGCTTTAAAATCCTGAGCGAAGGCACTGCGGGCCGACCTCTCCTCTCCCAGCCAGTCGTGGCTGGCCTTTC-AAA-GTGTGCAGTTGTCTCCTCCCTGTCCAGCCCCATCGTCGCCCA-------------------GGA-CCAGCT------GGGCCGCGGTCTGACCTGAGGCTGCTGCTCAGCGCCGGGGCGCTGGCGCTCTCCATTCGGGCACCTTC-------------------------------CAGCATACCGCTCGGCTCCGGGAGCCGCTCTGCAAACTTGGGCAGCTCAGAGCGCAAGCTTTGCCTCTCGACTTCTCCCTCCTTGGGTCCCC---------GGCGCCCCCGCCTCCCACGATCCCTTTCACTAGGAGCAGCCTGTCCCAGCGGGCTGGCAACTTGCACCCCTTCCTAGTCATCCTCCCT----GAAACGCGACCATGCTGTTAAGGGGCGTCCTCCTGGCGTTGCAAGGTAAGGCC-TGGACCCCAGGACAACCCC-----GGGGGCGCTCTGACGACTCGCCCCCGCTCCTGCTGCCCCCGGGGGTCCGGCTCACCGTGCTGG-----GCTGGGCCATCCGAGGGCGCCTCCTGATCCTCCGCAGCCGCTAA-CTCCC----TCCCCTGGCCAAGCCTGGGGTGGGGGTGGG------CGTGGGGTCGCTCAGTGGAGGCGCCCGGGGATGCTGGGGGACAGGTACTGCATCC------CTCTCCCGCCCCCTCCCGCTCGTCTTTCCCCCACTTTCACCAGGTAGT-CCCCCTGGGGCTCCCCGAGTTGGTGCAAACCCTCCT---GGGTGGAGCTCGAACTGAAACTCGCTTTGTGCCCGCAGCCCTGCAGCTCGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTGAAGAGAGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAAATGAGGAAGGTAAGGAGGCTC------------GGTGGAGAGGGG--------CGCGAGGTGAACTTTCTTCCTTGA--TGGCTTGCTTTTTTT---TCCCACATGGG-TAATGTTATCTTGGAGTTAATTCTCCGCGGCAAGAAAA--GTGTGAGTCATGGATCCTCCTTCAAGCCCTCAGCTGTGCTGCAAGGGATGGCCGAGGCAGGCAC-GGGG---CGGGCG--GGAGGCCGCCCTTTGTTTACCTGGCCTATGGGTAGAAGCTTAAAATTTGCGTCTCACCCCAGCACTCCTTAATGGAAGGGAGAAACGGAGCACAGCTAATGATTGTTCTCCGCTGTGGGCCTCTGCAGGCACACCAGCTGTGTG-CCTCTGCAGGCCAGCAATCTTTCTGGTCCTCAGGAGACATGTCTGTGAGTTGGGAAAAGTTG--GAT-GGGACTAGTTCTCCTTCAGCTTTGCAGAAATGGTTCCACAATTCTGTGATGGGACGTCAGTGCTAAGACATCACTTCTGCCTTGACC-------------------CTGACAGTGTT-----------TTTTGCTGCATGATTTCATCCTCACA-----CTCCTGTTTATA--ATCCTGCCCTGGAC--AAAAGAAACCATGTACACTGCCAAATGCCTGGGGTCCCT- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64737738 1997 + 135191526 CTCTTTACAAGAAGAGAATATTGTTGGAGACCCACTTAGTGCCCAAAGCAAACAGC-TTCCTCA-GAAGTAACTACCT-CCCCAACAACCCCCTCCCAGTTTAAAGCCTCCCATTAATCAATCTATCATGGCTCTTTGGAGAGAAGGAATG-------CCCCCATTTCACCGGACGGAGGGAATGCTGAGCACCAGGCATGCCAGACATTCCACCGGCT-AAAAAAAGT----------------GGGGGTGGTATTCCAGGGTTAGCATTGCTGGACCGTAAACGCTGAAACTCCTTAGATATAAAGCTTATTCCAC-CCAACCGTTTCCAAATTTTCCTCCAGGCTGTCCTTGGAGAATTCCACCCTCTTTCATTCTGGGGAGAAGAAGTTAAAATTAGGGCCAGCCCTGC--------------------------------------------------------------GGGACTGACATGCCAGATGCAGGG-AAGCTGTCCCCAGAAATAAGCGAGTTCCCACCGTGGCTGGGCGGGGCGG-GCGCCTCCGGTCCCAACCCAGCGGAGGGACTCCTGGAAGGCCTGCCCCTTCCAAGTGTCTGCAAGGGCTCTGGTCCCAAGCTTTAAAATCCTGAGCGAAGGCACTGCGGGCCGACCTCTCCTATCCCAGCCAGTCGTGGCTGGCCTTTC-AAA-GTGTGCAGTTGTCTCCTCCCTGTCCAGCCCCATCGTCGCCCA-------------------GGA-CCAGCT------GGGCCGCGGTCTGACCTGAGGCTGTTGCTCAGCGCCGGGGCGCTGGCACTCTCCATTCGGGCACCTTC-------------------------------CAGCGTACCGCTAGGCTCCGGGAGCCGCTCTGCAAAGTTGGGCAGCTCAGAGCGCAAGCTTTGCCTCTCGACTTCTCCCTCCCCGGGTCCCC---------GGCGCCCCCGCCTCCCACGATCCCTTTCACTAGGAGCAGCCTGTCCCAGCGGGCTGGCAACTTGCACCCCTTCCTAGTCATCCTCCCT----GAAACGCGACCATGCTGTTAAGGGGCGTCCTCCTGGCGTTGCAAGGTAAGGCC-TGGACCCCGGGACAACCCC-----GGGGGCGCTCTGACGACTCGCCCCCGCTCCTGCTGCCCCCGGAGGTCCGGCTCATCGTGCTGG-----GCTGGGCCATCCGAGGGCGCCTTCTGATCCTCCGCAGCCGCTAA-CTCCC----TCCCCTGGCCAAGCCTGGGGTGGGGGTGGG------CGTGGGGTCGCTCAGTGGAGGCGCCCGGGGATGCTGGGGGGCAGGTACTGCATCC------CTCTCCCACCCCCTCCCGCTCGTCTTTCCCCCACTTTCACCAGGTAGT-CCCCCTGGGGCTCCCCGAGTTGGTGCAAACGCTCCT---GGGTGGAGCTCGAACTGAAACTCGCTTTGTGTCCGCAGCCCTGCAGCTCGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTGAAGAGAGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAAATGAGGAAGGTAAGGAGGCTC------------GGTGGAGAGGGG--------CGCGAGGTGAACTTTCTTCCTTGA--TGGCTTGC-TTTTTT---TCCCACATGGG-TAATGTTATCTTGGAGTTAATTCTCCGCGGCAAGAAAA--GTGTGAGTCATGGATCCTCCTTCAAGCCCTCAGCTGTGCTGCAAGGGATGGCCGAGGCAGGCAC-GGGG---CGGGCG--GGAGGCCGCCCTTTGTTTACCTGGCCTATGGGTAGAAGCTTAAAATGTGCGTCTCACCCCAGCATTCCTTAATGGAAGGGAGAAACGGAGCACAGCTAATGATTGTTCCCCGCTCTGGGCCTCTGCAGGTACACCATCTGTGTG-CCTCTGCAGGCCAGCAACCTTTCTGGTCCTCAGGAGACATGTCTGTGAGTTGGGAAAAGTTG--GAT-GGGACTAGTTCTCCTTCAGCTTTGCAGAAATGGTTCCACAATTCTTTGATGGGACCTCGGTGCTAAGACATCAAGTCTGCCTTGATC-------------------CTGACAGTGTT-----------TTTTGCTGCATGATTTCATCCTCACG-----CTCCTGTTTATA--ATCCTGCCCTGGAC--AAAAGAAACCATGTACACTGCCAAACGCCTGGGGTCCCT- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57778435 1977 - 122973662 CTCTTTACAAGAAGAGAATATTGTTGGAGACCCACTTAGTGCCCAAAGCAAACAGG-TTCCTCA-GAAGTAACTCCCTCCCCCAACAACCCCCTCCCAGTTTAAAGCCTCCCATTAATCAATCTATCATGGCTCTTTGGAGAGAAGGAATG-------CCCCCATTTCACCGGACGGAGGGAATGCTGAGCACCAGGCATGCCAGACATTCCACCGGCT-AAAAAAAGT----------------GGGGGTGGTATTCCAGGGTTAGCATTGCTGGACCGTAAACGCTGAAACTCCTTAGATATAAAGCTTATTCCAC-CCAACCGTTTCCAAATTTTCCTCCAGGCTGTCCTTGGAGAATTCCACCCTCTTTCATTCTGGGGAGAAGAAGTTAAAATTAGGGCCAGCCCTGC--------------------------------------------------------------GGGACTGACATGCCAGATGCAGGG-AAGCTGTCCCCAGAAATAAGCGAGTTCCCACCGCCGCTGGGCGGGGCGG-GCGCCTCCGGTCCCAACCCAGCGGAGGGACTCCTGGAAGGCCTGCCCCTTCCAAGTGTCTGCAAGGGCTCTGATCCCAAGCTTTAAAATCCTGAGCGAAGGCACTGCGGGCCGATCTCTCCTCTCCCAGCCAGTCGTGGCTGGCCTTTC-AAA-GTGTGCAGTTGTCTCTTCCCTGCCCAGCCCCATCGTCGCCCA-------------------GGA-CCAGCT------GGGCCGCGGTCTGACCTGAGGCTGCTGCTCAGCCCTGCGGCGCTGGCGCTCTCCATTCGGGCACCTTC-------------------------------CAGCGTACCGCTCGGCTCCGGGAGCCACTCTGCAAAGTTGGGCAGCTCAGAGCGCAAGCTTTGCCTCTCGACTTCTCCCTCCCCGGGTTCCC---------GGCGCCCCCGCCTCCCACGATCCCTTTCACTAGGAGCAGCCTGTCCCAGCGTGCTGGCAACTTGCACCCCTTCCTAGTCGTCCTCCCC----GAAACGCGACCATGCTGTTAATGGGCGTCCTCCTGGCGTTGCAAGGTAAGGCC-TGGACCCCGGGACAACCAC-----GGGGGCGCTCTGACGACTCGCCCTCGCTCCTGCTGCCCCCGGGGGCCCGGCTCACCGTGCTGG-----GCTGGGCCATCCGAGGGCGCCTCCTGATCCTCCGCAGCCGCTAA-CTCCC----TCCCCTGGCCAAGCCTGGGGTGGGGGTGGG------CGTGGGGTCGCTCAGTGGAGGCGCCCGGGGATGCTGGGGGACAGGTACTACATCC------CTCCCCCGCCTCCTCCCGCTAGTCTTTCCCCCACTTTCACCAGGTAGT-CCCCCTGGGGCTCCCCGAGTTGGTGCAAACGCTCCTTGGGGGGGGAGCTCGAACTGAAACTCGCTTTGTGCCCGCAGCCTTGCAGCTCTCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTGAAGAGAGCACTTGCGGTTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAAATGAGGAAGGTAAGAAGGCTC------------GGTAGAGAGGGG--------CGCGAGGTGAACTTTCTTCCTTAA--TGGCTTGCTTTTTTT---ACCCACATGGG-TAATGTTATCTTGGAGTTAATTCCCCGCGGCAAGAAAA--GTGTGAGTCATGGATCCTCCTTCAAGCCCTCAGCTGTGCTGCAAGGGATGGCCGAGGCAGGCAC-GGGG---TGGGCG--GGAGGCCGCCCTTTGCTTACCTGGCCTGTGGGTAGAAGCTTAAAATTTGCGTCTCACCCCAGCACTCCTTAATGGAAGGGAGAAAGGGAGCACAACTAATGATTGTCCTCC-------------------------CCTGTGTG-CCTCTGTAGGCCAGCAACCTTTCTGGTCCTCAGGAGACATGTCTGTGAGTTGGGAAAAGTTG--GAT-GGGACTAGTTCTCCTTCAGCTTTGCAGAAATGGTTCCACAGTTCTGTGATGGGACCTCAGTGCTAAGACATCACGTCTGCCTTGACC-------------------CTGACAGTGTT-----------TTTTGCTGCATGATTTCATCCTCACA-----CTCCTGTTTATA--ATCCTGCCCTGGAC--AAAAGAAACCAAGTACACTGCCAAATGCCTGGGATCCCT- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79711086 1975 + 112192347 CTCTTTACAGGAAGAGAATATTGTTGGAGACCCACTTAGTGCCCAAAGCAAACAGG-TTCCTCA-GAATTAACTGCCT---CCAACAACCCCCTCCCAGTTTAAAGCCTCCCACTAATCAATCTATCATGGCTCTTTGGAGAGAAGGAATG-------CCCCCATTTCACCGGACGGAGGGAATGCTGAGCACCAGGCATGCCAGACATTCCACCGGCT-AAAAAAAGT----------------GGGGGTGGTATTCCAGGGTTAGCTTTGCTGGACCGTAAATGCCGAAACTCCTTAGATATAAAGCTTATTCCAC-CCAACCGTTTCCAAATTTTCCTCCAGGCTGTCCTAGGAGAATTCCACCCTCCTTCATTCTGGGGAGAAGAAGTTAAAATTAGGGCCAGCCCTGC--------------------------------------------------------------GGGACTGACATGCCAGATGCAGGG-AAGCTGTCCCCAGAAATAAGCGAGTTCCCACCGCGGCTGGGCGGGGCGG-GCGCCTCCGGTCCCAACCCAGCGGAGGGACTCCTGGAAGGCCTGCCCCTTCCAAGTGTCTGCAAGGGCTCTGGTCCCAAGCTTTAAAATCCTGAGCGAAGGCACTGCTGGCCGACCTCTCCTCTCCCAGCCAGTCGTGGCTGGCCTTTC-AAA-GTGTGCAGTTGTCTCCTCCCTGTCCAGCCCCACCGTCGCCCA-------------------GGA-CCAGCT------GGGCCGCGGTCTGACCTGAGGCTGCTGCTCAGCGCCGGGGCGCTGGCGCTCTCCATTCGGGCACCTTC-------------------------------CAGCAAACCACTCAGCTCCGGGAGCCGCTCTGCAAAGTTGGGCAGCTCAGAGCACAAGCTTTACCTCTCGACTTCTCCCTTCCCGGGTCCCC---------GGCGCCCCCGCCTCCCAGGGTCCCTTTCACTAGGAGCAGCCTGTCCCAGGGGGCTGGCAACTTGCACCTCTTCCTAGTCATCCTCCCT----GAAACGCGACCATGCTGTTAAGGGGCGTCCTCCTGGCGTTGCAAGGTAAGGCC-GGGACCCCGGGACAACCCC-----GGAGACGCTCTGACTACTCGCCTCCGCTTCTGCTGCCCCCGGGGGCCCGGCTCATCGTGCTGG-----GCTGGGCCATCCGAGGGCGGTTCCCGATCTTCCGCAGCCGCTAA-CTCCC----TCCGCTGGCCAAGCGTGGGGTGGGGGTGGG------CGTGGGGTCGCTCAGCGGAGGGGCCCGGGGATGCTGGGGGACAGGTACTGCATCC------CTCTCCCACCCCCTCCCGCTCGTCTTTCCCCCACTTTCACCAGGTAGT-CCCCCTGGGGTCCCCCGAGTTGGTTCAAACGCTCCT---GGGGGGAGCTCGAACTGAAACTCGCTTTGTGCCCGCAGCCCTGCAGCTCGCCGGTGCCCTCGACCTGCCCGCTGGATCCTGCGCCTTTGAAGAGAGCACTTGCAGCTTTGACTCCGTGTTGGCCTTTCTGCCGTGGATTTTAAATGAGGAAGGTAAGGGGGCTC------------AGTGGAGAGGGG--------CGCGAGGTGAACTTTCTTCCTTGA--TGGCTTGC-TTTTTT---CCCCACATTGG-TACTGTTATCTTGGAGTTAATTCCCCGCGGCAAGAAAA--GTGTGAGTCATGGATCCTCCTTCAGGCCCTCAGCTGTGCTGCAAGGGATGGCCGAAGCAGGCAC-GGGG---CGGGCG--GGAGGCAGCCCTTTGTTTACCTGGCCTATGGGCAGAAGCTTAAAATTTGCGTCTCACCCCAGCACTCCTTAATGGAAGGGAGAAACGGAGCACAGCTAATGATTGTTTCCC---------------------ACCAGCTATGTGCCCTCTGCAGGCCAGCAACCTTTCTGGTCCTCAGGAGACATGTCTGTGAGTTGGGAAAAGTTG--GAT-GGGACTAGCTCTCCTTCAGCTTTGCAGAAAAGGTTCCACAATTCTGTGATGGGACCTCAGTGCTAAGACATCAGGTCTGCCTTAATC-------------------CTGACAGCGTT-----------TTTTGCTGCATGATTTCATCCTCACA-----CTCGTGTTTATA--ATCCTGCCCTGGAC--AAAAGAAACCATGTACACTGCCAAATGCCTGGGGTCCCT- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80791934 1975 + 112612857 CTCTTTACAGGAAGAGAATATTGTTGGAGACCCACTTAGTGCCCAAAGCAAACAGG-TTCCTCA-GAATTAACTGCCT---CCAACAACCCCCTCCCAGTTTAAAGCCTCCCACTAATCAATCTATCATGGCTCTTTGGAGAGAAGGAATG-------CCCCCGTTTCACCGGACGGAGGGAATGCTGAGCACCAGGCATGCCAGACATTCCACCGGCT-AAAAAAAGT----------------GGGGGTGGTATTCCAGGGTTAGCTTTGCTGGACCGTAAATGCCGAAACTCCTTAGATATAAAGCTTATTCCAC-CCAACCGTTTCCAAATTTTCCTCCAGGCTGTCCTAGGAGAATTCCACCCTCCTTCATTCTGGGGAGAAGAAGTTAAAATTAGGGCCAGCCCTGC--------------------------------------------------------------GGGACTGACATGCCAGATGCAGGG-AAGCTGTCCCCAGAAATAAGCGAGTTCCCACCGCGGCTGGGCGGGGCGG-GCGCCTCCGGTCCCAACCCAGCGGAGGGACTCCTGGAAGGCCTGCCCCTTCCAAGTGTCTGCAAGGGCTCTGGTCCCAAGCTTTAAAATCCTGAGCGAAGGCACTGCTGGCCGACCTCTCCTCTCCCAGCCAGTCGTGGCTGGCCTTTC-GAA-GTGTGCAGTTGTCTCCTCCCTGTCCAGCCCCACCGTCGCCCA-------------------GGA-CCAGCT------GGGCCGCGGTCTGACCTGAGGCTGCTGCTCAGCGCCGGGGCGCTGGCGCTCTCCATTCGGGCACCTTC-------------------------------CAGCAAACCACTCAGCTCCGGGAGCCGCTCTGCAAAGTTGGGCAGCTCAGAGCACAAGCTTTACCTCTCGACTTCTCCCTTCCCGGGTCCCC---------GGCGCCCCCGCCTCCCACGATCCCTTTCACTAGGAGCAGCCTGTCCCAGGGGGCTGGCAACTTGCACCTCTTCCTAGTCATCCTCCCT----GAAACGCGACCATGCTGTTAAGGGGTGTCCTCCTGGCGTTGCAAGGTAAGGCC-GGGACCCCGGGACAACCCC-----GGAGACGCTCTGACTACTCGCCTCCGCTTTTGCTGCCCCCGGGGGCCCGGCTCATCGTGCTGG-----GCTGGGCCATCCGAGGGCGCCTCCCGATCCTCCGCAGCCGCTAA-CTCCC----TCCGCTGGCCAAGCGTGGGGTGGGGGTGGG------CGTGGGGTCGCTCAGCGGAGGGGCCCGGGGATGCTGGGGGACAGGTACTGCATCC------CTCTCCCACCCCCTCCCGCTCGTCTTTCCCCCACTTTCACCAGGTAGT-CCCCCTGGGGTCCCCCGAGTTGGTTCAAACGCTCCT---GGGGGGAGCTCGAACTGAAACTCGCTTTGTGCCCGCAGCCCTGCAGCTCGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGCGCCTTTGAAGAGAGCACTTGCAGCTTTGACTCCGTGTTGGCCTTTCTGCCGTGGATTTTAAATGAGGAAGGTAAGGGGGCCC------------AGTGGAGAGGGG--------CGCGAGGTGAACTTTCTTCCTTGA--TGGCTTGC-TTTTTT---TCCCACATTGG-TACTGTTATCTTGGAGTTAATTCCCCGCGGCAAGAAAA--GTGTGAGTCATGGATCCTCCTTCAGGCCCTCAGCTGTGCTGCAAGGGATGGCCGAAGCAGGCAC-GGGG---CGGGCG--GGAGGCAGCCCTTTGTTTACCTGGCCTATGGGTAGAAGCTTAAAATTTGCGTCTCACCCCAGCACTCCTTAATGGAAGGGAGAAACGGAGCACAGCTAATGATTGTTCCCC---------------------ACCAGCTATGTGCCCTCTGCAGGCCAGCAACCTTTCTGGTCCTCAGGAGACATGTCTGTGAGTTGGGAAAAGTTG--GAT-GGGACTAGCTCTCCTTCAGCTTTGCAGAAAAGGTTCCACAATTCTGTGATGGGACCTCAGTGCTAAGACATCAGGTCTGCCTTAATC-------------------CTGACAGCGTT-----------TTTTGCTGCATGATTTCATCCTCACA-----CTCGTGTTTATA--ATCCTGTCCTGGAC--AAAAGAAACCATGTACACTGCCAAATGCCTGGGGTCCCT- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76840701 1976 + 107442819 ctctttacaggaagagaaTATTGTTGGAGACCCACTTAGTGCCCAAAGCAAACAGGTTTCCTCA-GAATTAACTGCCT---CCAACAACCCCCTCCCAGTTTAAAGCCTCCCACTAATCAATCTATCATGGCTCTTTGGAGAGAAGGAATG-------CCCCCATTTCACCGGACGGAGGGAATGCTGAGCACCAGGCATGCCAGACATTCCACCGGCT-aaaaaaaGT----------------GGGGGTGGTATTCCACGGTTAGCTTTGCTGGACCGTAAATGCCGAAACTCCTTAGATATAAAGCTTATTCCAC-CCAACTGTTTCCAAATTTTCCTCCAGGCTGTCCTAGGAGAATTCCACCCTCCTTCATTCTGGGGAGAAGAAGTTAAAATTAGGGCCAGCCCTGC--------------------------------------------------------------GGGACTGACATGCCAGATGCAGGG-AAGCTGTCCCCAGAAATAAGCGAGTTCCCACCGCGGCTGGGCGGGGCGG-GCGCCTCCGGTCCCAACCCAGCGGAGGGACTCCTGGAAGGCCTGCCCCTTCCAAGTGTCTGCAAGGGCTCTGGTCCCAAGCTTTAAAATCCTGAGCGAAGGCACTGCTGGCCGACCTCTCCTCTCCCAGCCAGTCGTGGCTGGCCTTTC-AAA-GTGTGCAGTTGTCTCCTCCCTGTCCAGCCCCACCGTCGCCCA-------------------GGA-CCAGCT------GGGCCGCGGTCTGACCTGAGGCTGCTGCTCAGCGCCGAGGCGCTGGCGCTCTCCATTCGGGCACCTTC-------------------------------CAGCAAACCACTCAGCTCCGGGAGCCGCTCTGCAAAGTTGGGCAGCTCAGAGCACAAGCTTTACCTCTCGACTTCTCCCTTCCCGGGTCCCC---------GGCGCCCCCGCCTCCCACGATCCCTTTCACTAGGAGCAGCCTGTCCCAGGGGGCTGGCAACTTGCACCTCTTCCTAGTCATCCTCCCT----GAAACGCAACCATGCTGTTAAGGGGCGTCCTCCTGGCGTTTCAAGGTAAGGCC-GGGACCCCGGGACAACCCC-----GGAGACGCTCTGACTACTCGCCTCCGCTTCTGCTGCCCCCGGGGGCCCGGCTCATCGTGCTGG-----GCTGGGACATCCGAGGGCACCTCCCGATCCTCCGCAGCCGCTAA-CTCCC----TCCGCTGGCCAAgcgtggggtgggggtggg------cgtggggtcgctcagcggaggggcccggggatgctgggggACAGGTACTGCATCC------GTCTCCCACCCCCTCCCGCTCGTCTTTCCCCCACTTTCACCAGGTAGT-CCCCCTGGGGCTCCCCGAGTTGGTTCAAACGCTCCT---GGGGGGAGCTCGAACTGAAACTCGCTTTGTACCCGCAGCCCTGCAGCTCGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGCGCCTTTGAAGAGAGCACTTGCAGCTTTGACTCCGTGTTGGCCTTTCTGCCGTGGATTTTAAATGAGGAAGGTAAGGGGGCTC------------AGTGGAGAGGGG--------CGCGAGGTGAACTTTCTTCCTTGA--TGGCTTGC-tttttt---tCCCACATTGG-TAATGTTATCTTGGAGTTAATTCCCCGCGGCAAGAAAA--GTGTGAGTCATGGATCCTCCTTCAGGCCCTCAGCTGTGCTGCAAGGGATGGCCGAAGCAGGCAC-GGGG---CGGGCG--GGAGGCAGCCCTTTGTTTACCTGGCCTATGGGTAGAAGCTTAAAATTTGCGTCTCACCCCAGCACTCCTTAATGGAAGGGAGAAACGGAGCACAGCTAATGATTGTTCCCC---------------------ACCAGCTATGTGCCCTCTGCAGGCCAGCAACCTTTCTGGTCCTCAGGAGACATGTCTGTGAGTTGGGAAAAGTTG--GAT-GGGACTAGCTCTCCTTCAGCTTTGCAGAAAAGGTTCCACAATTCTGTGATGGGACCTCAGTGCTAAGACATCAGGTCTGCCTTAATC-------------------CTGACAGCGTT-----------TTTTGCTGCATGATTTCATCCTCACA-----CTCGTGTTTATA--ATCCTGCCCTGGAC--AAAAGAAACCATGTACACTGCCAAATGCCTGGGGTCCCT- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81104597 1979 + 108555830 CTCTTTATAGGAAGAGAATATTGTTGGAGACCCACTTAGTGCCCAAAGCAAACAGG-TTCCTCA-GAATTAACTGCCT---CCAACAACCCCCTCCCATTTTAAAGCCTCCCACTAATCAATCTATCATGGCTCTTTGGAGAGAAGGAATG-------CCCCCATTTCACCGGACGGAGGGAATGCTGAGCACCAGGCATGCCAGACATTCCACCGGCTAAAAAAAAGT----------------GGGGGTGGTATTCCAGGGTTAGCTTTGCTGGACCGTAAATGCTGAAACTCCTTAGATATAAAGCTTATTCCAC-CCAACCGTTTCCAAATTTTCCTCCAGGCTGTCCTAGGAGAATTCCACCCTCTTTCATTCTGGGGAGAAGAAGTTAAAATTAGGGCCAGCCCTGC--------------------------------------------------------------GGGACTGACATGCCAGATGCAGGG-AAGCTGTCCCCAGAAATAAGCGAGTTCCCACCGCGGCTGGGCGGGGCGG-GCGCCTCCGGTCCCAACCCAGCGGAGGGACTCCTGGAAGGCCTGCCCCTTCCAAGTGTCTGCAAGGGCTCTGGTCCCAAGCTTTAAAATCCTGAGCGAAGGCACTGCTGGCCGACCTCTCCTCTCCCAGCCAGTCGTGGCTGGCCTTTC-AAA-GTGTGCAGTTGTCTCCTCCCTGTCCAGCCCCACCGTCGCCCA-------------------GGA-CCAGCT------GGGCCGCGGTCTGACCTGAGGCTGCTGCTCAGCGCCGGGGCGCTGGCACTCTCCATTCGGGCACCTTC-------------------------------CAGCAAACCACTCGGCTCCGGGAGCCGCTCTGCAAAGTTGGGCAGCTCAGAGCGCAAGCTTTACCTCTCGACTTCTCCCTTCCCGGGTCCCC---------GGCGCCCCTGCCTCCCACGATCCCTTTCACTAGGAGCAGCCTGTCCCAGGGGACTGGCAACTTGCACCTCTTCCTAGTCATCCTCCCT----GAAACGCGACTATGCTGTTAAGGGGCGTCCTCCTGGCGTTGCAAGGTAAGGCCTTGGACCCCGGGACAACCCC-----GGAGACGCTCTGACTACTCGCCTCCGCTCCTGCTGCCCCCGCGGGCCCGGCTCATCGTGCTGG-----GCTGGGCTATCCGAGGGCGCCTCCCGATCCTCCGCAGCCGCTAA-CTCCC----TCCCCTGGCCAAGCGTGGGGTGGGGGTGGG------CGTGGGGTCGCTCAGCGGAGGGGCCCGGGGATGCTGGGGGACAGGTACTGCATCC------CTCTCCCACCCCCTCCCGCTCGTCTTTCCTCCACTTTCACCAGGTAGTCCCCCCTGGGGCTCCCCGAGTTGGTGCAAACGCTCCT---GGGGGGAGCTCGAACTGAAACTCGCTTTGTGCCCGCAGCCCTGCAGTTCGCGGGTGCCCTCGACCTGCCCGCTGGGTCCTGCGCCTTTGAAGAGAGCACTTGCAGCTTTGACTCCGTGTTGGCCTTTCTGCCCTGGATTTTAAATGAGGAAGGTAAGGGGGCTT------------GGTGGAGAGGGG--------CTCGAGGTGAACTTTCTTCCTTGA--TGGCTTGC-TTTTTT---TCCCACATTGGTTAATGTTATCTTGGAGTTAATTCCCCGCGGCAAGAAAA--GTGTGAGTCATGGATCCTCCTTCAGGCCCTCAGCTGTGCTGCAAGGGATGGCCGAAGCAGGCAC-GGGG---CGGGCG--GGAGGCAGCCCTTTGTTTACCTGGCCTATGGGTAGAAGCTTAAAATTTGCGTCTCTCCCCAGCACTCCTTAATGGAAGGGAGAAACGGAGCACAGCTAATGATTGTTCCCC---------------------ACCAGCTATGTGCCCTCTGCAGGCCAGCAACCTTTCTGGTCCTCAGGAGACATGTCTGTGAGTTGGGAAAAGTTG--GAT-GGGACTAGCTCTCCTTCAGCTTTGCAGAAAAGGTTCCACAATTCTGTGATGGGACCTCAGTGCTAAGACATCAGGTCTGCCTCAATC-------------------CTGACAGTGTT-----------TTTTGCTGCATGATTTCATCCTTACA-----CTCGTGTTTATA--ATCCTGCCCTGGAC--AAAAGAAACCATGTACACTGCCAAATGCCTGGGGTCCCT- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111324143 1963 - 210400635 CTCTTTAGAGGAAGAGAATATT---GGAGACCCACTTAGTGTCCAAAGCAAACAGG-TTCCTCA-GAAGTAACCCCCTCCCCCAACAACCCCCCTCCCAGTTAAAGGCTCCCACTAATCAATCTATCATGGCTCTTTGGAGACAAGGAATG-------CCCCCATTTCATCGGAAGGAGGGAATGCTGAGCACCAGGCATGCCAGACATTCCACCGG---CAAAAAAGT----------------GGGGGTGGTATTCCAGGGTTAGCACTGCTGGACCGTAAACGCTGAAACTCCTTAGATATGAAGCTTATTCCAC-CCAACCGTTTCCAAATTTTCCTCCAGGCTGTCCTAGGAGAATTCCACCCTCTTTAATTCTGGGG---AGAAGTTAAAATTAGGGCCAGCCCTGC--------------------------------------------------------------GGGACTGACATGCCAGATGCAGGG-AAGCTGTCCCCAGAAATAAGCTAGTTCCCACCGCGGCTGGGCGGGGCGC-GCGCCTCCGGTCCCAACCCAGCGGAGGGACTCCTGGAAGGCCTGCCCCTTCCAAGTGTCTGCAAGGGCTCTGGTCCCAAGCTTTAAAATCCTGAGAGAAGGCACTGCAGGCCGACCTCTCCTCTCCCAGCCAGTCGTGGCTGGCCTTTC-AAA-GTGTGCAGCTGTCTCCTGCCTGCCCAGCCGCATCGTCGCCCA-------------------GGA-CCAGCT------GGGCCGCGGTCTGACCCGAGGTTGCTGCTCAGCGCCACGGTGCTGGCGCTCTCCATTCTGGCACCTTC-------------------------------CAGCATACCGCTCGGCTCTAAAAGCCGCTCTGCAAAGTTGGGCAGCTCAGAGCGCAAGCTTTGCCTCTCGACTTCTCGGTCCCCGGGTCCCCGGCGACCCTGGCGACCCTGCTTCCCACGATCCCTTTCACTAGGAGCAGCCTGTCCCAGCGGGCTGGCAGCGTGCACCCCTTTCCGGTCCTCCTCCCT----GAATCGCGACCATGCTGTTAAGGGGCGTCCTCCTGGCGTTGCAAGGTAAGGCC-TGGACCCCGGGATAACCCC-----TGGGGCGCTCTGACGCCGCGTCCCCGCTCCTGCTGTCCCGGGTGGCCCGGCTCACCGTGCTGG-----GCTGGGCTATCCGAGGGTGCCTCCCGATCCTCCGCAGCTGCTAA-CTCCC----TCCCCTGGCCAAGCCTGGGGT-GGGGTGGG------CCTGGGGTCTCTCAGT------------GGATGCTGGGGGACAGGTACTGCATCT-------TCTCCCGCCCCCTCCCGCTCCTGGTTCCCCTGCTCTCACCAGATAGT-CTCCCT-GGGCGCCCCAAGTTGGTGCAAACGCTCCT---GAGGGGAGCTCGAACTGAAACTCGCTTTGTGTCCTCAGCCCTGCAGCTCGCTGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTGAAGAGAGCACTTGCGGCTTTGACTCCGTGTTGGCCTTTCTGCCGTGGATTTTAAATGAGGAAGGTAAGGGGGCTC------------GGTGGAGAGGGG--------CGCGAGGTGAACTTTCTTCCTTGATTTGGCTTT--TTTCCC---CCCCACATGGG-TAGTGTTATCTTGGCGTTAATTCCCTTCGGCAAGAAAA--GTGTGAGTCATAGATCCTCCTTAAAGCCCTCAGCTGTGCTGCAAGGGATGGCCTAGGCAAACACGGGGG---CAGGCG--GGAGGCCGCCCTTTGTTTACCTGGCCTGTGGGTAGAAGCTTAAAATTTGCGTCTCACCGCAGCACTCCTTAATAGAGGGGGGAATCAGAGCAGAGCTCGTTATTGTCCCCT---------------------ACCAGCTGTGTGCCCTCTGCAGGCCAGCAACCTTTCTGGTCCTCAAGAGACATGTCTGTGAGTTGGGAAAAGTTG--GAT-GGGATTAATT---CTTCAGCTTTGCAGAAATGGTTCCAGAATTCTGTGATAGGACCTTAGTGCTAAGACATCACGTCTGCCTTGTGC-------------------CCGACAGTATT-----------TTTTGCTGCATGATTTCATCCTCACA-----CTCCTGTTTATA--ATCCTCCCCTGGAC--AAAAGAAACCATGTCCACTGCCAAATGCCTGGGGTCCCT- i calJac3.chr1 C 0 I 12 s mm10.chr19 37982655 1869 - 61431566 CT------------AATATACTTTT----AACTATTTGAT----------ATCAGG---------GAAATGACCCTCT-CCCCAAC---------------------CTTCCATTAG---------AATGGCTGTTTGCAGAAGAGGACTGCCCCCCCCCCCCATTTCACTGGAC-CAGGGAACGCTGAACATCAAGCATGCCAGACATTCTTCTGCCC-AAAAGGAGTGTGTGTGTGTGTGTGGGGGGGTACTATTCCAGGGTTAGCAACACTGGGTCG--AACGCT-------CTGAGAATTAAAATTTATCCCACGCCCACCATATCCAAAATTTCCTCTAGAAAGCCCTAAGAGAATTCCATTCCTTTCCATTCTAAAGAAAGGTGGTTAAAATTAGGGacacacacacacacacacacacacacacacacacacacgagagagagagagagagagagagagagagagagagaTAGTTACAAGCTACATGCAGGGAAAGCTGTCCCCTGAAATAAGCTGTTTCCCACCGTGGATGGGCGGGGCAG-GAGTCTCTGGTCTCAACCCAGCAGAGGGA------------CTGCCCCTTCTAAGTGTATGCAAGAGGTCTGGTCCCCAGCTTTAAAATTCTGGACGAAGGCACCACTTGCTGACCTCTCCTCTCCCC-CAAGTGGTGGCTGGCCCTTCTCAA-GTGTGCAGTTGTCTCCTCCCTGTCCAGTCCGGCAGTCGCCCG-------------------GGGCCCAACC------GGGCTACGAG-TGGCCGGACGCTACAGCCTTGCGC---------AGCGCGCTCTGCTC---------------------------------------------------CTCAG-----------ACTCTTCGAATTTGAGCAGCCTGTGGCA---------------------TCCCCCAGCAGGTCCCC---------CAGCTCCTTGCCTAGCACCCTCCCTTCC-CTAGGAGCAGCGGGCCACAGTGAGCCAGCAG-------CCCTCGCGGGTCCTCCTGCCT----GAAGTTCAACTATGCTACTAGAAGGGGTCCTGCTGGTAGTGCAAGGTAAGAAC-----CAACAGGAGACCCCCCCGGGGAGGGCGTCCTGGAAACTCGCTCCCTCTTGGGCTGTCAGGGTGGG-----------GTTCTGGTGTCCGCTCCGCCATCCAACAGCTCTTCTGGACAATTCTCAGCCACTAAGCTCCCGGCTCTCCCTGGTCAAGCACGGGATGGGGGTGGG------TATGGAGTTGCGCAGAGGAGGGTCCCAGGAGTGTTGAGGG--AGGTCAGACATCC------TTCTCTCTTTCCTTCCCACAAGAC--TCCCCGAACTTCACCAGGTAGT-C-----------CCCAGGGCTAGTGCAATACTACCA---GGCAGAAACCCAAACTGAAAGTCCCTTTGTGCCCGCAGCCTTGCAGCTTGCCAATGCCCTAGACCTGCCCGCTGGCTCCTGCGCCTTTGAAGAAGACACGTGTGGCTTTGACTCCGTGTTTGCGTTTCTGCCTTGGATACTAAATGAGGAAGGTAAGGGGACTT------------CGTAGAAAGATG--------CTCGAGGTGAACTTTCTTC----A--CGTCTTGT-TCCTCCCAACCCCCCGGAAG-TAAAGATATCTTGGAGTTACTTCCCTTTGGGAGGAAAAGTGTGTGAGTCATGAAACCTCCTTCCAACTCTCC----TGCAGCAAAGAGTGGCCAGGGAAACCAC-GGGA---AAGGGGGCGGAGGGGAACAGCTGTGTACCTGGCT------------CTGAGCATGCGCTCCTACCCCCAGCACACCCTATTGAAAGGGACAAAGGGGATTCTGCTAATGATTGTTGCCC----------------------CTAGCCGTGTGCCCCCTGCAGGCTGATAGCCTTGCTAGT-CTCAGTGGCTACTTGCCCGAGCTGAGA----TTGTCAAA-CGGACTAGCTCACAGGAAGCTTTGCAGAAAT-TTTCCACACGGTTGTGA-GCGTCCTCTGTGCTAAGCTCTC----CCACTTTGGTCC-----------------ACCCACAGCAGT-----------TTTACCTG--TGA-TTCATCCTTTC------CCATTGTATCTA--ATTCAGCACTGGAC--AAAAG-AGTTAACTCCACCACGGAGTCCCTGAAGCCACT- i mm10.chr19 C 0 I 6 s canFam3.chr1 35226831 1948 - 122678785 TTCTTTCTCAGAAGAGAATATTTTTAAAGACCCACTTAATGCTCAAAGCACTCACA-CCCTTCCTGACATCAGCACCC---CCACCCCTCACATGCCAATTTAGAA------AACTACTAATTTATCATGGCTCTTTGGAGAGGAGGAATG-------CCCCCATTTTACCGGACAGAGGGAATGCCGAGCACCAGGCATGCCAGACATTCCACTG-CT-AAAAAAAGG----------------GGGGGTGGTATTCTAGGCTCAGCGTTACTGGGCCCCGAACAC-ACAGCTCCTGAGACACAAAGCTTGTGTCAC-CAAGCAGTTTCCAAGTTCTCCTCTAGGTTTTCCACGGAGAATTCCACCCTTTTCCATTCTGGGGAGAAGAAGTTAAAATTAGGGCCAGCCCTGC--------------------------------------------------------------AGTACTGGTGTGCCAGATGCGGGG-AAGCTGTCCCCAGAAATAAGCTGGTTCCCACCGCGGATGGGCGGGGCGGCGCGCCTCCAGTCCCGGCCCAGCGGAGGGGCTGCAGGAAGGCCGGCCCCCTCCGAGTGTCTGCAAGGGGTCCGGTCCCAAGCTTTAAAGCCGTGAGCCGAGGCGCTGCATCCCGCCCTCTCCTCTGCCGGCCGGTCCTAGCTGCCCTTGC-AAACGTGTGCCG-TGTCTCCTTCCCGCCCGGCGCAGTCCTCGCCCGCCCGGGACCGCTGCGCGCCGGG-CCGGCCTCCCTGGGGACGCGGTCCGCCCCGCGGCTGCAACCCGGCG-------AGCGGCGCTCTGCACcccagcagccccgcagcccagcaccccagcagcccagcaCCCTCAGCTTTCCGCTCAGCTCCCCGAGCCGCTCCGCAAAGTTGGGCAGCCCCAAGCGCACGCTCAGCCGCTCGGCTTCTCCCTCCCCGGGTCCCC---------GGCGGCC-------------------------------------CCCAGCGGGCC-----------CCCCTTTCCGGTCGGCCTCCCTCCCCGAAGCGCGACCATGCTGCTAAGGGGCGTCCTCCTGGCCGTGCTGGGTAAGTGC-Agggccccgggggaccccc----ggggggcgccctcgggac------ccgctcccgcagcccccgg------------ccgTCCCGA-----GCCCGGCCATCCGCGGGGGCCTCCGGGTCCTTCCCCG--GCCAT-TCCCC----CTCCCCAGCCTGGGGCGCGATGCGGGAGGG------CGGAGGGCTGTGCCTGGGAAGCG-CTGGGGGCGGGGAGGGTGTCCTAGTGCATCCCGCTTGCTCTCCCGTCGTTTCCCCCTAGCTCCCCGCCC---------------C-CACCCCGGGGCGCCCCAAGTTGGTGCAGACGCTCCC---AGCCCTCGCCCGAACCGAAATTCGTTTTGTGCCCGCAGCCCCGCAGCTCGCGGGTGCCCTGGACCTGCCCGCCGGCTCCTGCGCCTTTGAGGAAAACACCTGTGGCTTTGACTCGGTGTTCACGTACCTGCCCTGGATTTTAAACGAGGAAGGTAAGGGGGCTCCAGAGCTCGGGGGGTGGGGTGGGGGGGGAGGCTGCGAAGTGAACTCCCCCCCTTGC--TGGTTGGC-CTTTTC---T----CAAGGG-CAATGTTATCTTGGAGTTAAATCTCCTTGGGAGGAAAA--GTGTGAGTCATGGATCATC---------CTCAGCTCCGCTGCACGCAGAGCCCCGGGAAGACAT-GGGGGGCGGGGGG--AGGGGGCGTCCTTTGTTTACCTGGCCT-----------------------GCCTCTCCCCAGGCT-------TGCAAGG-----------------TCATGACGGTCGCCC---------------------ACCGGCTGCGTGCCCTCTGCAGGTCTTCAGCCCCTCTGGGCCTCAGTAGACACCTTTATGAGCTGGGA-AAGTCG--CATGGGGGCTAGTTCTCTCCCCATACTGCAGAAGGGGTTCCCTGATTCTGTGGAGCCGCCTGAGCGCTAAGCCCTCGTGTTTATGTTGTGCCTCGTGTGTATGTGTTGGGCTGGGAGCGTCTGCACCAAGTGTGCTGTTGTATGACTTTATCCTCCTACTTCCCTCCTATCTGTAATATCCAGCACTTGGCAGAAAGGACACCAAGTCCATGACTGTGTGCCTGAGGTCACCG i canFam3.chr1 I 115 C 0 a score=16327.000000 s hg38.chr9_GL383541v1_alt 21169 8 + 171286 GTCTCACT s panTro4.chr9 68586678 8 + 137840987 GTCTCACT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64739735 8 + 135191526 GTCTCACT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57780412 8 - 122973662 GTTTCACT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79713061 8 + 112192347 GTCTCACT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80793909 8 + 112612857 GTCTCACT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76842677 8 + 107442819 GTCTCACT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81106576 8 + 108555830 GTCTCACT i chlSab2.chr12 C 0 C 0 s mm10.chr19 37984530 6 - 61431566 GGGCCA-- i mm10.chr19 I 6 C 0 s canFam3.chr1 35228779 8 - 122678785 GGCTGGCG i canFam3.chr1 C 0 C 0 e calJac3.chr1 111326106 12 - 210400635 I a score=314851.000000 s hg38.chr9_GL383541v1_alt 21177 88 + 171286 ---GGTGGTCATTGTCTTACTACTCTATACTGTTTGGGTCCCAAGGACAAAGTTTAAATG---TGGGGTCTTCTGAAGTGTCATCTTGCCTTTA s panTro4.chr9 68586686 88 + 137840987 ---GGTGGTCATTGTCTTACTACTCTATACTGTTTGGGTCCCAAGGACAAAGTTTAAATG---TGGGGTCTTCTGAAGTGTCATCTTGCCTTTA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64739743 88 + 135191526 ---GGTGGTCATTGTCTTACTACTCTATACTGTTTGGGTCCCAAGGACAAAGTTTAAATG---TGGGGTCTTCTGAAGTGTCATCTTGGCTTTA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57780420 88 - 122973662 ---GGTGGTCATTGTCTTACTACTCTACACTGTTTGGGTCCCAAGGACACAGTTTAAATG---TGGGGTCTTCTGAAGTGTCGTCTTGCCTTTA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79713069 86 + 112192347 ---GGTGGGCATTGTCTTACTACTCTATACTGTTTGGGTCCC--GGACAAAGTTGAAATG---TGGGGTCTTCTGAAGTGTCTTCTTGCCTTCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80793917 86 + 112612857 ---GGTGGGCATTGTCTTACTACTCTATACTGTTTGGGTCCC--GGACAAAGTTGAAATG---TGGGGTCTTCTGAAGTGTCTTCTTGCCTTCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76842685 86 + 107442819 ---GGTGGGCATTGTCTTACTACTCTATACTGTTTGGGTCCC--GGACAAAGTTGAAATG---TGGGGTCTTCTGAATTGTCTTCTTGCCTTTa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81106584 88 + 108555830 ---GGTGGGCATTGTCTTACTACTCTATACTGTTTGGGTCCCAAGGACAAAGTTGAAATG---TGTGGTCTTCTGAAGTGTCTTCTTGCCTTTA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111326118 88 - 210400635 ---GGTGGTCATTGTCTCACTACTCTATACTGTTTGGGTCCCAGGGACAGAGTTTAAATG---TGGGGTCTTCTGAAGTGTCTTCTTGCCTTCA i calJac3.chr1 I 12 C 0 s mm10.chr19 37984536 88 - 61431566 ---ATTGATCA--GTCACATTACTCTGCACCGCTGGGGTTCCGGTGACAACGTTTAAGTGAAAAGGAGTCTG-TGATGTGTTTTCTTACCCTTC i mm10.chr19 C 0 I 39 s canFam3.chr1 35228787 84 - 122678785 GGCGTTGGTCACTGTCTCACCACTACATACTGTTTGGGTTCTGGTGACA--GTTTAAATG---TG-GGTCTTCAGATGTTTCTTCTTACC---- i canFam3.chr1 C 0 C 0 a score=83741.000000 s hg38.chr9_GL383541v1_alt 21265 56 + 171286 TATAGTTTTTT---------TTGTTTTTTGTTTTA------------------AAGTGTGGTTCTCAGTACCCAATGGCAGGC s panTro4.chr9 68586774 56 + 137840987 TATAGTTTTTT---------TTGTTTTTTTTTTTT------------------AAGTGTGGTTCTCAGTACCCAATGGCAGGC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64739831 52 + 135191526 TATAGTTGTT-------------TTTTTTTTTTTA------------------AAGTGTGGTTCTCAGTACCCGATGGCAGGC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57780508 45 - 122973662 TATGGCTTTT--------------------TTTTT------------------AAGTGTGTTTCTCAGGACCCAATGGCAGGC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79713155 54 + 112192347 TATAGGTTTTT---------TTTTTTTTTTTTT--------------------AAGTGTGGTTCTCAGTACCCAATAGCAGGC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80794003 58 + 112612857 TATAGGttttt---------ttttttttttttttttA----------------AAGTGTGGTTCTCAGTACCCAATAGCAGGC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76842771 73 + 107442819 tataggttttg---------tttgtttgtttgttttgttttgttttgttttt-aagtgtggTTCTCAGTACCCAATAGCAGGC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81106672 83 + 108555830 TATAGGttttttttttttggttttttttttttttttgtttttttttttttttAAAGTGTGGTTCTCAGTACCCAATAGCAGGT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111326206 44 - 210400635 TTCATATATAT---------ATA------------------------------AAGAGTGGTTCTCAGTACCCAGTGGCAGGC i calJac3.chr1 C 0 C 0 s canFam3.chr1 35228871 47 - 122678785 -------------------------CTTCATTATATGGTCAAAAA--------ACAAGTAGTTCTCAGCGCCCAGCAGCA--- i canFam3.chr1 C 0 C 0 e mm10.chr19 37984624 39 - 61431566 I a score=4841341.000000 s hg38.chr9_GL383541v1_alt 21321 1396 + 171286 GGCACTGGGTGTCCCTT---CTTTCCTTT-----------CTCTCTCT----TTTGTCACCACCA--GTGAAGCCTGATGCCC---ACAGACTATTTGGATTGGAAAATAGCCTTCTTTAAAAAACATGGTAC--CCTAGATGAAACCAGCTCACCTCCTTCCCCACTCAATTGTCCTCAGGCCGCAGATCCTCCCACCTCGCTCCCTGGG-GGAGGATGGAGCCCGGAACCCCTGGTTAGATGTATGAACTGTCACCACAgctcactctg-ccccaggcttctactcagggttctgcatacatt-agcttctctgaccctcacaggtaggtgatgttggacccgttttacagaggaaggaatctcagccatagaatattcaaatggctagtccatatcac--agtgtcactgagtggcTAACTC-TG--AGT--------------GTCTAGTTA---GGAAGAAACAGGAAGGAACTGGTTCAGTAGTAATCTCCATCTTTATCCAACAATTGCCAAGTCTTGACTACTACAGTCTACTTAGGG-GTGGCT-GGGAAAAAGCAATTCTTGATTTATTATTCGAGGGATTCCTATCTTGCTGATGGCTTTAGGAAAGTCTCTGTAATCTTGCCA-CTCACCCT------TTCCCTATACTGGCTGTA-TGGAAGCATTGCGGGAGATGGCCTTAGAAATGCCACGAGACTGGCTTTGGAGAGCACACTCCTCCA-GCACGGGGCttctcaaacctcagct-----------gcatcagaatcacctggtgggctt-gtaagacacagattgctgggccccacttcctgagtgtct-----------gattcag-----------ggggcctgaga------at-----------------------------ttctaacaagttcccagg---------tgatgctgatgatgctggtctcgggactacactttgagaacTGCCGACTTCCACAGTCTGTGTACACACACACACA--------------------------------ACCTGTGC-----------------TGTTGTTGGCTCTGAGTAGGTCTGGCACTAGGGTGAAGGAGCTacttgcagga-cccgagagtgaacagctacttaagtcttgttccctaagcacttggcttgcctcatcctagtgctggccctgAGAAAAGGAAATCAACATCATTCCTT----------------------------------------------------------------------------------------------AAGCCAGGAGCCTTAGTTAGTCTCTGAGTTCCTGC-------CTCCGGCCCTCTGTCAGGAT--GGGGGCCCCC-TCACAGCCTGCCTCT-GGTCAGTGGGCATGCCACAGCCTGCTGAACACAACTGCCTCCCAGACCCACAGGAAGTCTCTCTGCTGAGTTGGCACCTCTGCCCCAGGACAGCAGTTAAACCATCCCCCTTCAGGGAAAACAGGAAGATGCTTATAGAAAAAGGTGATTACAGTTTAATAGTATAACGAAGGCACTGTGGCTTTGCTTTCTGC-ATTCT-----TTCTAAC-AACCACTGCTTTCTGGCTCAGGACTGGGACTACTGGGTTGGCTGGCGGAAGTTAATTCATTCTCCTCTGAGCACT s panTro4.chr9 68586830 1398 + 137840987 GGCACTGGGTGTCCCTT---CTTTCCTTT-----------CTCTCTCTCTCTTTTGTCACCACCA--GTGAAGCCTGATGCCC---ACAGACTATTTGGATTGGAAAATAGCCTTCTTTAAAAAACATGGTAC--CCTAGATGAAACCAGCTCACCTCCTTCCCCACTCAATTGTCCTCAGGCCGCAGATCCTCCCACCTGGCTCCCTGGG-GGAGGATGGAGCCCAGAATCCCTGGTTAGATGTATGAACTGTCACCACAgctcactctg-ccccaggcttctactcagggttctgcatacatt-agcttctctgaccctcacaggtaggtgatgttggacccattttacagaggaaggaatctcagccatagcatattcaaatggctagtccaTATCA----GTGTCACTGAGTGGCTAACTC-TG--AGT--------------GTCTAGTTA---GGAAGAAACAGGAAGGAACTGGTTCAGTAGTAATCTCCATCTTTATCCAACAATTGCCAAGTCTTGACTACTACAGTTTACTTAGGG-GTGGCT-GGGAAAAAGCAATTCCTGATTTATTATTCGAGGGATTCCTATCTTGCTGATGGCTTTAGGAAAGTCTCTGTAATCTTGCCA-CTCACCCT------TTCCCTATACTGGCTGTA-TGGAAGCATTGTGGGAGATGGCCTTAGAAATGCCACGAGACTGGCTTTGGAGAGCACTCTCCTCCA-GCACGGGGCttctcaaacctcagct-----------gcatcagaatcacctggtgggctt-gtaagacacagattgctgggccccactccctgagtgtct-----------gattcag-----------ggggtctgaga------at-----------------------------ttctaacaagttcccagg---------tgatgctgatgatgctggtctcgggactacactttgagaacTGCCGACTTCCACAGTTCGTGTACACACACACACA--------------------------------ACCTGTGC-----------------TGTTGTTGGCTCTGAGTAGGTCTGGCACTAGGGTGAAGGAGCTacttgcagga-cccgagagtgaacagctacttaagtcttgttccctaagcacttggcttgcctcatcgtagtgctggccctgAGAAAAGGAAATCAACATCATTCCTT----------------------------------------------------------------------------------------------AAGCCAGGAGCCTTAGTTAGTCTCTGAGTTCCTGC-------CTCCGGCCCTCTGTCAGGAT--GGGGGCCCCC-TCACAGCCTGCCTCT-GGTCAGTGGGCATGCCACAGCGTGCTGAACACAACTGCCTCCCAGACCCACAGGAAGTCTCTCTGCTGAGTTGGCACCTCTGCCCCAGGACAGCAGTTAAACCGTCCCCCTTCAGGGAAAACAGGAAGATGCTTATAGAAAAAGGTGATTACAGTTTAATAGTATAACGAAGGCACTGTGGCTTTGCTTTCTGC-ATTCT-----TTCTAAC-AGCCACTGCTTTCTGGCTCAGGACTGGGACTACTGGGTTGGCTGGGGGAAGTTAATTCATTCTCCTCTGAGCACT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64739883 1398 + 135191526 AGCACTGGGTGTCCCTTCTCCTTTCCTTT-----------CTCTCTCT--CTTTTGTGACCACCA--GTGAAGCCTGATGCCC---ACAGACTATTTGGATTGGAAAATAGCCTTCTTTAAAAAACATGGTAC--CCTAGATGAAACCAGCTCCCCTCCTTCCCCACTCAGTTGTCCTCAGGCCCCAGATCCTCCCACCTG--TCCCTAGG-GGAGGATGGAGCCCAGAACCCCTGGTTAGATGTATGAACTGTCACCACAgctcactctg-ctccaggcttttactcagggttctgcatacatt-agcttctctgaccctcacaggtaggtgatgttggacccgttttacagaggaaggaatctcagccatagaatattcaaatggctagtccatatcac--agtgtcactgagtggcTAACTCTTG--AGT--------------GTCTAGTTA---GGAAGAAACAGGAAGGAACTGGTTCAGTAGTAATCTCCATCTTTATCCAACAATTGCCAAGTCTTGACTACTACAGTTTACTTAGGGAATGGCT-GGGAAAAAGCAATTCCTGATTTATTATTCGAGGGATTCCTATCTTGCTGATAGCTTTAGGAAAGTCTCTGTAATCTCGCCA-CTCACTCT------TTCCCTATACTGGCTGTA-TGGAAGCATTGTGGGAGATGGCCTTAGAAATGCCACGAGACTGGCTTTGGAGAGCACTCTCCTCCA-GCACGGGGCttctcaaacgtcagct-----------gcatcagaatcacctggtgggctt-gtaagacacagattgctgggccccactccctgagtgtct-----------gattcag-----------ggggcctgaga------at-----------------------------ttctaacaagttcccagg---------tgatgctgatgatgctggtctcgggactacactttgagaacTGCCGACTTCCACAGTCCGTGCACACACACACACA--------------------------------ACCTGTGC-----------------TGTTGTTGGCTCTGAGTAGGTCTGGCACTAGGGTGAAGGAGCTacttgcagga-cccaagagtgaacagctccttaagtcttgttccctaagcacttggcttgcctcatcctagtgctggccctgAGAAAAGGAAATCAACATCATTCCTT----------------------------------------------------------------------------------------------AAGCCAGGATCCTAAGTTAGTCTCTGAGTTCCTGC-------CTCCGGCCCTCTGTCAGGAT--GGGGGCCCCC-TCACAGCCTGCCTCT-GGTCAGTGGGCATGCCACAGCGTGCTGAACACAACTGCCTCCCAGACCCACAGGAAGTCTCTCTGCTGAGTTGGCACCTCTGCCCCGGGACAGCAGTTAAACCGTCCCCCTTCAGGGAAAACAGGAAGATGCTTATAGAAAAAGGTGATTACAGTTTAATAGTATAATGAAGGCACTGTGGCTTTGCTTTCTGC-ATTCT-----TTCTAAC-AGCCACTGCTTTCTGGCTCAGGACTGGGACTACTGGGTTGACTGGGGGAAGTTAATTCATT---CTCTGAGCACT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57780553 1385 - 122973662 AGCACTGGGTGTCCCTT---CTTTCCTTT-----------CTCTCTCT----TTTGTCACCACCA--ATGAAGCCTGATGCTC---ACAGACTATTTGGATTGGAAAATAGCCTTCTTTAAAAAACATAGTAC--CCTAGATGAAACCAGCTCACCTCCTTCCCCACTCAATTGTCCTCAGGCCCCAGATCCTCCCACCTGGCTCCCTGGG-GAAGGATGGAGCCCAGAACCCCTGGTTAGATGTATGAAGTGTCACCACAgctcaccctg-ccccaggcttccactcagggttctgcatacatt-agcttctctgactctcacaggtaggtgatgttggacccattttacagaggaaggaatctcagccatagaatattcaaatggctagtccatatcac--agtgtcactgagtggc-------tg--agT--------------GTCTAGTTA---GGAAGAAACAGGAAGGAACTGGTTCAGTAGTAATCTCCATCTTTATCCAACAATTGCCAAGTCTTGACTACTACAATTTACTTAGGG-GTGGCT-GGGAAAAAGCAATTCCTGGTTTATTATTTGAGGGATTCCTATCTTGCTGATGGCTTTAGGAAAGTCTCTGTAATCTCGCCA-CTCACCCT------TTCCCTGTACTGGCTGTA-TGGAAGCGTTGTGGGAGATGGCCTTAGAAATGCCGCAAGACTGGCTTTGGAGAGCACTCTTCTCCA-GCACGGGGCttctcaaacctcagct-----------gcatcagaatcacctggtgggctt-gtaagacacagattgctgggccccactccctgagtgtct-----------gattcag-----------gggtcctgaga------at-----------------------------ttccaacaagttcccagg---------tgatgctgatgatgctggtctcgggactacactgtgagaactgctgACTTCCACAGTCCATGTACACACACACACA--------------------------------ACCTGTGC-----------------TGTTGTTGGCTCTGAATAGGGCTGGCACTAGGGTGAAGGAGCTacttgcagga-cccgagagtgaacagctccttaagtcttgttccctaagcacttggcttgcctcatcctagtgctggccctgAGAAAAGGAAATCAACATCATTCCTT----------------------------------------------------------------------------------------------AAGCCAAGAGCC----TTAGTCTCTGAGTCCCTGC-------CTCTGGCCCTCTCTCAGGAT--GGGGGCCCCC-TCACAGCCTGCCTCT-GGTCAGTGGGCATGCCACAGCGTGCTGAACACAACTGCTTCCCAGACCCACAGGAAGTCTCTCTGCTGAGTTGGCACCTCTGCCCCAGCACAGCAGTT-AACCGTCCCCCTTCAGGGAAAACAGGAAGATGCTTATAGAAAAAGGTGATTACAGTTTAATAGTATAATGAAGGCACTGTGGCTTTGCTTTCTGC-ATTCT-----TTCTAAC-AGCCACTGTTTTCTGGCTCAGGACTGGGGCTACTGGGTTGGCTGGGGGAAGTTAATTCATTCTCCTCTGAGCACT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79713209 1413 + 112192347 GGCACTGGGTATCCCTTCTCCTTTCCTTT-----------CTCTCTCTCTCTTTTGTGACCACCA--GTGAAACCTGCTGCCC---ACAGACTATTTGGATTGGAAAATAGCCTTCTTTAAAAAACATAGTAC--CCTAGATGAAACCAGCTCACCTCCTTCCCCACTCAATTGCCCTCAGGTCCCAGATCCTCCCACCTGGCTGCCTGGG-GGAGGATGGAGTCCAGAACCCCTGGTTAGATGTATGAACTGTCACCACAgcttactctg-ccccaggcctttactcagggttctgcatacatt-agctcctctgaccctcacaggtaggtgatgttggacccattttacagaggaaggaatctcagccatagaatattcaaatggctagtccacatcac--agtgtcactgagtggcTAACTC-TA--AGT--------------GTCTAGTTA---GGAAGAAACAGGAAGGAACTGGTTCAGTAGTAATCTCCATCTTT--------ATTGCCAAGTCTTGACTACTACAGTCTACTTAGGA-GTGGCT-GGGAAAAAGCAATTCCTGATTTATTATTCGAGGGATTCCTGTCTTGCTGATGGCTTTAGGAAAGTCTCTGTAATCTCACCA-CTCACCCT------TTCCCTATACTGGCTGTA-TGGAAGCATTATGGGAGATGGCCTTAGAAATGCCACGAGACTGGCTTTGGAGAACACTCTTCTCCA-GCACGGGGCttctcagacctcagct-----------gcatcagagtcacctggtgggctt-gtaagacacagattgctgggccccactccccgagtgtct-----------gattcag-----------ggggactgaga------atttctaacaagttcccggtgatgctgatgattctaacaagttcccagg---------tgatgctgatgaggctggtctcgggaccacactttgagaacTGCCGACTTCCACAGTACATGTACACACACACACA--------------------------------ACCTGTGC-----------------TGTTGTTGACTCTGAGTA------------GGGCGAAGGAGCTacttgcagga-cccacgagtgaacagctccttaagtcttgttccctaagcacttggcttgcctcatcctagtgctggccctgAGAAAAGGAAATCAACATCATTCCTT----------------------------------------------------------------------------------------------AAGCCAGGAGCCTTAGTTAGTCTCTGAGCCCCTGC-------CTCTGGCCCTCTGTCAGGAT-GGGGGGCCCCC-TCACAGCCTGCCTCT-GGTCAGTGGGCATGCCACAGCATGCTTAACACAACTGCCTCCCAGACCCACAGGAAGTCTCTCTGCTGAGTTGGCACCTCTGCCCTAGCACGGCAGTTAAACCATCCCCCTTCAGGGAAAACAGGAAGACGCTTATAGAAAAAGGTGATTACAGTTTAATAGTATAATGAAGGCACTGTGGCTTTGCTTTCTGC-ATTCT-----TTCTAAC-AGCTACTGCTTTCCAGCTCAGGACTGGGACTACTGGGTTGGCTGGGGGAAGTTAATTTATTCTCCTCTGAGCACT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80794061 1383 + 112612857 GGCACTGGGTATCCCTTCTCCTTTCCTTT-----------CTCTCTCTCTCTTTTGTGACCACCA--GTGAAACCTGCTGCCC---ACAGACTATTTGGATTGGAAAATAGCCTTCTTTAAAAAACATAGTAC--CCTAGATGAAACCAGCTCACCTCCTTCCCCACTCAATTGCCCTCAGGTCCCAGATCCTCCCACCTGGCTGCCTGGG-GGAGGATGGAGTCCAGAACCCCTGGTTAGATGTATGAACTGTCACCACAgcttactctg-ccccaggcctttactcagggttctgcatacatt-agctcctctgaccctcacaggtaggtgatgttggacccattttacagaggaaggaatctcagccatagaatattcaaatggctagtccacatcac--agtgtcactgagtggcTAACTC-TA--AGT--------------GTCTAGTTA---GGAAGAAACAGGAAGGAACTGGTTCAGTAGTAATCTCCATCTTT--------ATTGCCAAGTCTTGACTACTACAGTCTACTTAGGA-GTGGCT--GGAAAAAGCAATTCCTGATTTATTATTCGAGGGATTCCTGTCTTGCTGATGGCTTTAGGAAAGTCTCTGTAATCTCACCA-CTCACCCT------TTCCCTATACTGGCTGTA-TGGAAGCATTGTGGGAGATGGCCTTAGAAATGCCACGAGACTGGCTTTGGAGAACACTCTTCTCCA-GCACGGGGCttctcagacctcagct-----------gcatcagagtcacctggtgggctt-gtaagacacagattgctgggccccactccccgagtgtct-----------gattcag-----------ggggactgaga------at-----------------------------ttctaacaagttcccagg---------tgatgctgatgatgctggtctcgggaccacactttgagaacTGCCGACTTCCACAGTACATGTACACACACACACA--------------------------------ACCTGTGC-----------------TGTTGTTGACTCTGAGTA------------GGGCGAAGGAGCTacttgcagga-cccgagagtgaacagctccttaagtcttgttccctaagcacttggcttgcctcatcctagtgctggccctgAGAAAAGGAAATCAACATCATTCCTT----------------------------------------------------------------------------------------------AAGCCAGGAGCCTTAGTTAGTCTCTGAGCCCCTGC-------CTCTGGCCCTCTGTCAGGAT-GGGGGGCCCCC-TCACAGCCTGCCTCT-GGTCAGTGGGCATGCCACAGCATGCTTAACACAACTGCCTCCCAGACCCACAGGAAGTCTCTCTGCTGAGTTGGCACCTCTGCCCTAGCACGGCAGTTAAACCATCCCCCTTCAGGGAAAACAGGAAGACGCTTATAGAAAAAGGTGATTACAGTTTAATAGTATAATGAAGGCACTGTGGCTTTGCTTTCTGC-ATTCT-----TTCTAAC-AGCTACTGCTTTCCAGCTCTGGACTGGGACTACTGGGTTGGCTGGGGGAAGTTAATTTATTCTCCTCTGAGCACT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76842844 1397 + 107442819 GGCACTGGGtatcccttctcctttccttt-----------ctctctctctcttttgtgaCCACCA--GTGAAACCTGCTGCCC---ACAGACTATTTGGATTGGAAAATAgccttctttaaaaaacatagtaC--CCTAGATGAAACCAGCTCACCTCCTTCCCCACTCAATTGCCCTCAGGTCCCAGATCCTCCCACCTGGCTGCCTGGG-GGAGGATGGAGTCCAGAACCCCTGGTTCGATGTATGAATTGTCACTACAGCTTACTCTG-CCCCAGGCCCTTACTCAGGGTTCTGCGTACATT-AGCTTCTCTGACCCTCACAGGTAGGTGATGTtggacccattttacagaggaaggaaTCTCAGCCATAGAATATTCAAATGACTAGTCCACATCAC--AGTGTCACTGAGTGGCTAACTC-TG--AGT--------------GTCTAGTTA---GGAAGAAACAGGAAGGAACTGGTTCAGTAGTAATCTCCATCTTT--------ATTGCCAAGTCTTGACTACTACAGTTTACTTAGGG-GTGGCTGGGAAAAAAGCAATTCCTGATTTATTATTCGAGGGATTCCTATCTTGCTGATGGCTTTAGGAAAGTCTCTGTAATCTCACCA-CTCACCCT------TTCCCTATGCTGGCTGTA-TGGAAGCATTGTGGGAGATGGCCTTAGAAATGCCATGAGGCTGGCTTTGGAGAACACTCTTCTCCA-GCATGGGGCTTCTCAGACCTCAGCT-----------GCATCA-AGTCACCTGGTGGGCTT-GTAagacacagattgctgggccccactccCCGAGTGTCT-----------GATTCAG-----------GGGGACtaagc------at-----------------------------ttctaacaagttcccagg---------tgatgctgatgatgctggtctcgggaccacactttgagaactgccGACTTCCACagtacatgtacacacacacaca--------------------------------acctgtgC-----------------TGTTGTTGACTCTGAGTAGGGCTGGCACTGGGGCGAAGGAGCTACTTGCAGGA-CCTGAGAGTGAACAGCTCCTTAAGTCTTGTTCCCTAAGCACTTGGCTTGCCTCATCCTAGTGCTGGCCCTgagaaaaggaaatcaacatCATTCCTT----------------------------------------------------------------------------------------------AAGCCAGGAGCCTTAGTTAGTCTCTGAGCCCCTGC-------CTCTGGCCCTCCGTCAGGATgggggggCCCCC-TCACAGCCTGCCTCT-GGTCAGTGGGCATGCCACAGCATGCTTAACACAACTGCCTCCCAGACCCACAGGAAGTCTCTCTGCTGAGTTGGCACCTCTGCCCTAGCACGGCAGTTAAACCATCCCCCTTCAGGGAAAACAGGAAGACGCTTATAGAAAAAGGTGATTACCGTTTAATAGTATAATGAAGGCACTGTGGCTTTGCTTTCTGC-ATTCT-----TTCTAAC-AGCTACTGCTTTCTAGCTCAGGACTGGGACTACTGGGTTGGCTGGGGGAAGTTAATTTATTCTCCTCTGAGCACT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81106755 1382 + 108555830 GGCACTGGATATCCCTTCTCCTTTCCTTT-----------CTCTCTCTCTCTTTTGTGACCACCA--GTGAAACCTGCTGCCC---ACAGACTATTTGGATTGGAAAATAGCCTTCTTTTAAAAACATAGTAC--CCTAGATGAAACCAGCTCACCTCCTTCCCCACTCAATTGCCCTCAGGTCCCAGATCCTCCCACCTGGCTGCCTGGG-GGAGGATGGAGTCCAGAATCCCTGGTTAGATGTATGAACTGTCACCACAgcttactctg-ccccaggcctttactcagggttctgcgtacatt-agcttctctgaccctcacaggtaggtgatgttggacccattttacagaggaaggaatctcagccatagaatattcaaatggctagtccatatcac--agtgtcactgagtggcTAACTC-TG--AGT--------------GTCTAGTTA---GGAAGAAACAGGAAGGAACTGGTTCAGTAGTAATCTCCATCTTT--------ATTGCCAAGTCTTGACTACTACAGTTTACTTAGGG-GTGGCT-GGGAAAAAGCAATTCCTGATTTATTATTCGAGGGATTCCTATCTTGCTGATGGCTTTAGGAAAGTCTCTGTAATCTCACCA-CTCACCCT------TTCCCTATGCTGGCTGTA-TGGAAGCATTGTGGGAGACGGCCTTAGAAATGCCACGAGACTGGC-CTGGAGAACACTCTTCTCCA-GCACGGGGCttctcagacctcagct-----------gcatca-agtcacctggtgggttt-gtaagacacagattgctgggccccgctccccgagtgtct-----------gattcag-----------ggggactaaga------at-----------------------------ttctaacaagttcccagg---------tgatgctgatgatgctggtctcgggaccacactttgagaacTGCCGACTTCCAAAGTACATGTACACACACACACA--------------------------------ACCTGTGC-----------------TGTTGTTGACTCTGAGTA------------GGGCGAACGAGCTacttgcagga-cccgagagtgaacagctccttaagtcttgttccctgagcacttggcttgcctcatcctagtgctggccctgAGAAAAGGAAATCAACATCATTCCTT----------------------------------------------------------------------------------------------AAGCCAGGAGCCTTAGTTAGTCTCTGAGCCCCTGC-------CTCTGGCCCTCTGTCAGGAT-GGGGGGCCCCC-TCACAGCCTGCCTCT-GGTCAGTGGGCATGCCACAGCATGCTTAACACAACTGCCTCCCAGACCCACAGGAAGTCTCTCTGCTGAGTTGGCACCTCTGCCCCAGCACGGCAGTTAAACCATCCCCCTTCAGGGAAAACAGGAAGACGCTTATAGAAAAAGGTGATTACAGTTTAATAGTATAATGAAGGCACTGTGGCTTTGCTTTCTGC-ATTCT-----TTCTAAC-AGCTACTGCTTTCTAGCTCAGGACTGGGACTACTGGGTTGGCTGGGGGAAGTTAATTTATTCTCCTCTGAGCACT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111326250 1373 - 210400635 TGTACTGGGTGTCCCTTCTCCTTTCCTTT-----------CTCT--------TCTGTCACCACCA--ATGAAGCTTAATGCCC---ATAGACTGTTTGGATTGGAAAATAGCCTTCTTTAAAAAGCAT-GCAC--CCTAGATGAAACCAGCTTACCTCCTTCCCCACTCAGTTGTCTTCAGGCACCAGAT----CCACCTGGCTCCCTGGGAGGAGAATGGAGCCCAGAACCCCTGGTTAGATGTGTGAACTGTCTCCATAgctcactctg-ccccaggtttcttctcagggttctacgtacatt-aacttctctgactctcacagctaggtgatgttggacccattttacagaggaaggaatctcagccacagaatattcaaatagctagtctacatcac--aGTGTCACGCAATGGC-------TG--AGT--------------GTCTAGTT-------------AGGAAGGAATGGGTTCTGTAGTAATCTCCATCTTTATCCAACAATTGCCAAGTCTTAAGTACTATACTTTACTTAGGG-GTGTCC-AGGAAAAAGCAATTCCTGGTTTATTATTCAAGGGATTCCTACCTTGCTGATGGCTTCAGGAAG---TCTGTACTCTCACCA-CTCTCCCT------TTCCCTATTCTGGCTGTA-TGGAAGCATTTTGGGAGATGGTCTTAGAAATGCCATGAGACTGGCTTTGGAGAGCACTCTTCTCCA-GCAcagggcttctcaaacctcaacc-----------gcatcagaagcacctggtgggctt-gtaag--acagattgctgggccccacctgctgagtgtct-----------gattcat-----------gggacctaaga------at-----------------------------ctctaacaagttcccagg---------tgat---------gctggtctcgggaccacgcgttgagaacTGCCGATTTCCACAGTGTGTacacacacacacacacacacacacacacaca---------------cacCTGTGC-----------------TGTTGCTGGCTCTGAGTAGGGCTGGCACTAGGGTGAAAGAGCTacttgcagga-ccggagagtgaacagctcctt--gtcttgttccctaagcacttggcttgcctcaccctagtgctggccctCAGAAAAGGAAATCAACATCAATCCTT----------------------------------------------------------------------------------------------AAGCCAGGAGCC----TTAGTCTCTGAGCCCCCGC-------CTCCGACCCTCTGTCGGGAT--GGGGGCCCCTGTCACAGCCTGCCTCTGGGTCAGTGGGAATGCCACAGTGTGCTGAACACAACTGCCTCCCAGACCCACAGGAAGTCTCTCTGCTGAGTTGGCACCTCTGCCCCAGAA-GGCAGTTAAACAGTCCCCCTTCAGGGAAAACAGGAAGACTCTCACAGAAAAAGGTGATTACAGTTTAACAGTATAATGAACGTACTGTGGCTTTGCTTTCTGC-ATTCT-----TTCTAACAAACCACTGCTTTCTGGTTCAGGACTGGGACTACTGGGTTGGCTGG-GGAAGTTAATTCATTCTCCTCTGAGTGCT i calJac3.chr1 C 0 I 323 s mm10.chr19 37984663 1487 - 61431566 AGCACTGG-TGTCCCTC-TCCTTTCCTTT-----------CT-----TCGCTCTTATCACCATCATTTTGAAACGTGTTACTTTGGACCATTTATTTGGACT-TAGAGTAGACTCCCTTAGAAGACATGCTGCTGTATAAAGGAAGGCCGCTGAGCATTCTCCCAGCTCAGGCAACCTTGGAGTTCAAGTCATCCAGCCTGGCTCCCTGGA-ACTGGACG------------CTTGCTTAGGACGGAGAGCTGTGACCACAGTCCTTCCTG-CCCATGTGACTT--TGGGAGCCTTGCCTGTGTG-AGCTTCCCTGACCCGCACAGGTGGCTGATAATAG---CATT---CATATGA--GAATCTGAGCCTTCAACTAGTCACATGGTTG-------------------ACTGAGTGGCCAATAC-TG--AACCACAGCTGGGGGCGGGGTGGGGT---GGGGGACACA-GAAGATACTAAGTCAATAGTCATCTC---TTGTCTCCAACACTTGCCAGGTCTTAAG---TGTGGTTTATTTAGGT-TTATGT-GAGAAAGA----------------TGTTTAAGGGGTCCCTGTCTTGCTGGTGGTTTCAAGAGAAGAGTT-TAAGCTTGTCA-CCCCCTTCGTTATATTCCCTGTTCTGATTGGGTTTGAAACATTTTGAATGATGACTCTACCTATGCTATGGCAGTGACTTT-GAAAGCATTATTCTCAGTTTATAAGGCTTCTCAAATGCCTTCTGGTTTGAGAAGGTCtcaggatgacctggcaggcat-gttcca-gcagtttccta----tcccttcttgagagtct-----------gattcagtggtctggactggggcctgaga------at-----------------------------ttct--cacgttccaagatactgggactgctgctgtttctactgatctgggaaccacactttgagaatcCTAGACTACCACAGTATAGacacacacacacacacacacacacacacacacacacacacacacacCACCTATACCCATACCTAAGTCATTATGTCACTAGCCCCAAGTAAGACCAGGATCA----AAATGAGCCCCTC-----A-CCTGAGAGCAAACATTGCCCTAAG-----------------TTCACTTGTCTCAAGCTGCTGTGGGCCTAGGAAAAGAGAAAtctctctctccctctctccctctccctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacaaacacacaGCCAGGA------------CTCTGAGTCCTTGCATGTTCACTATGGCCTCCTGTCA-GAT--CAAACTTGCT-TCCCATCCAAAATCC---TGGGCGAGCATGCTGCTGCCTGCTGAGTGCTAGGGCCTCCCAGACTGGCAGGAAGT-GCTGCACAGCACTGGCATCTCTACACCAGTGTGACCGTTAAACAG-CCCCCTCCAGGGAAAACAGGAAGACGCTTATAGGAAAAGGTGATTAGAGTTTAATCACATAATAAATGCACTGTGGCTCT-CTCCCT----TTCT-----TTCATGT-AGCCAGTGCTTTCTGGCTGGAGGCTAGGACCTCTGGCTTGGCTAGGGGACATTAATTCATCCTGTCCTGAGGACT i mm10.chr19 I 39 C 0 s canFam3.chr1 35228918 1387 - 122678785 GGCCCTGGGTGACCCTTCTCTTTTCCCCTACTCTGCAAGCCTGCTTTTTTTTTTTTTTTCTTTTA----GAAGCTTGGTGCCC----CAGGTCATTTGGACTAGGGCATAGCCTCCTTTTAAAAACGCTGCAG--TGTAAAGGAGCTCAGTTAACTTCCTTCCCCTCTAAGCTGCCCTCAGGG-------CATCCCAGCTGGCTCCCTGGA-GGAGGGTGGAGCCCAGAACCCAGG------------------------------CTCTGCCCCCACGCTTCTGCT--GGGCTGCATATGCATTAAGTTTCTCAGACCTTCACAGGGGGGTGATGG-GAGCCCCCTTTACAAAGGAGGGCATCACAGTCTCAGGAGATTCAATTGGCTGACTCCTGACACAAAGCGTCACTCAGCAGCTGGCCC-TGCTGCT--------------GCGTGATTAAGGGGAAGAAACAGAACCGGACTAGCTCAGTAGCAATCTTTATTTATTGCCAACAGTTGCCAGGTCTTGTCTACTACAGTTTACTTGGGG-ATAGCTGGGGGAAAGGCAGTTCCTGATTCATTATCGGAGGGAT-CCTCCCCTGCCAATGGCCTTGGGAAGGTCTCTGTCCTCTCGTCACCCCACCTT------TTCTCTGCTCCTTCTGTGGCTGAAGCATTTTGAGAAACCACCTGCCATGGACCATATGACGGGCTTTGGAGAGCATTATCCTCTG-GCACTgtgcttctcagacttgagct-----------gctcgggagttatctgatgtgtgcaataagacacaaatc-ctgggtcccaccatctgagtttcccaagttcccggaactggt-----------ggggcctgagagttcacat-----------------------------ttcagacaagttcccagg---------tgttgct------gctggtctggagaccatgctttgagagccgctgA---CCAAAGTGAGTTTACACACACATATGCACACATACAGTCACACACA------------TCCCCCAG-----------------TGCTAGCGGCCCTGAGCAGTGTAGGGATTGGGAAGAAAGGGCcacttgcatgatcctgagagtgaaaacctccttacatcttgtgccctaaccatctctcctgtctcaccccagtcttggaccCAAGGAAAGGAAATCAGCCTCACCCCTT----------------------------------------------------------------------------------------------AATCGAGGAGCC----TCAGAGTCTGAGCTCCCAC-------TCCCAGC-----------AT--GGGGGCCTC--TCTCAGCTGCTCTGG-GGTCAGTGGACATGCCACAGCTTGCTGAGTTCCTCCACCTTCCAGACCCACAGGAAGC------GCTGGGCTGGCACCTCTGCACCAAAGTGGCCGTTAAACAGTGCCCCTTCTGGGAAAACAGGAAGATGATTATAGGAAAAGGTGATTTTGGTTTAATAGTATAATGGAAGCACTGTTGCTTTCTTTTTTGCTACTTTTGAGCTTCTAAC-GGCCACTGCTTTCTGGCATAGGATCAGGACTACTGGCTTGGCTGGGGAAAGTTCATTCATTCTCTTC-------- i canFam3.chr1 C 0 C 0 a score=1330732.000000 s hg38.chr9_GL383541v1_alt 22717 362 + 171286 CCAGGGTGGAGCAGGCAG-GTTA-GGCTCCAGTTGTTCCAGCTTCA-GTTTGTCAAAGGCCAGAACTTGGACGTAAC--AGTGTACTGCAGGCTCCAGGGCAGTGAGGTAGGTGTGTGGCAGTTGCTGTGGTTGC---CTAAGAAGACATCGCTAagaatttcccttataagcccatttctaggttggtaaattaaagataataaaattcttccaggctgaaatttggcaAGCTGTTCACAAGCTTCTCTGCAAATGCACT---TCTTCCTGCAGAAACCCTTTGAAACTGGTTCCATGG-TTCCATTCACCTTCATGTACTGGATCCACC----ATGGAAAGTAGTGGGTTTCAGAGACTTTTGCCCACATGCAC-tt s panTro4.chr9 68588228 359 + 137840987 CCAGGGTGGAGCAGGCAG-GTTG-GGCTCCAGTTGTTCCAGCTTCA-GTTTGTCAAAGGTCAGAACTTGGACGTAAC--AGTGTACTCCAGGCTCCAGGGCAGTGAGGTAGGTGTGTGGCAATTGCTGTGGTTGC---CTAAGA---CATCACTAAGAATTTCCCTTATAAGCCCATTTCTAGGTTGGTAAATTAAAGATAATAAAATTCTTCCAGGCTGAAATTTGGCAAGCTGTTCACAAGCTTCTCTGCAAATGCACT---TCTTCCTGCAGAAACCCTTTGAAACTGGTTCCATGG-TTCCATTCACCTTCATGTACTGGATCCACC----ATGGAAAGTAGTGGGTTTCAGAGACTTTTGCCCACATGCAC-tt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64741281 365 + 135191526 CCAGGGTACAGCAGGCGG-GTTA-GGCTCCAGTTGTTCCAGCTTCA-GTTTTTCAAAGGCCAGAACTTGGACGTAAC--AGTGTACTCCAGGCTCCAGGGCAGTGAGGTAGGTGTGTGGCAGTTGCTGTGGTTGCCTGCTAAGAAGACATCACTAAGAATTTCCCTTATAAGCCCATTTCTAGGTTGGTAAATTAAAGATAATAAAATTCTTCCAGGCTGAAATTTGGCAAGCTGTTCACGAGCTTCTCTGCAAATGCACT---TCTTCCTGCAGAAACCCTTTGAAACTGGTTCCATGG-TTCCATTCACCTTCATGTACTAGATCCACC----ATGGAAAGTAGTGGGTTTCAGAGACTTTTGCCCAGATGCAC-tt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57781938 357 - 122973662 CCAGGGTGGAGCAGGCAG-GTTA-GGCTCCAGTTATTCCAGCTTCA-GTTTTTCAAAGGCCAGAACTTGGACGTAAC--AGTGTACTGCAGGCTCCAGGGCAGTGAGGTAGGTGTGTGGCAGTTGCTGTGGTTGCCCGCTAAGAAGACATCACTAAGAAtttcccttataagcccatttctaggttggtaaattaaaggtaataaaattcttccaggctgaaatttggcaGGCTGTTCACAAGCTTCTCTGCAAATGCACT---TCTTGCTGCAGAAACCCTTTGTAAC--------TGC-TTCCATTCACCTGCATGCACTGGATCCACC----ATGGAAAGTAGTGGGTTTCAGAGACTTTTGCCCAGATGCAC-tt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79714622 357 + 112192347 CCAGGGTGGAGCAGGCAG-GTTA-CGCTCCAGTTGTTTCAGCTTCA-GTTTTTCAAAGGCCAGAACTTGGACGTAAC--GATGTACTCCAGGCTCCAGGGCAGTGAGGTAGGTGTGTGGCAGTTGCTACGGTTGCCTGCTAAGAAGACATCACTAAGAATTTCCCTTATAAGCCCATTTCTAGGTTGGTAAATTAAAGATAATAAAATTCTTCCAGGCTGAAATTTGGCAAGCTGTTCACAAACTTCTCTGCAAATGCACT---TCTTGCTGCAGAAACCCTTTGAAAC--------TGG-TTCCATTCACCTTCATGTACTGGTTCCACC----ATAGAAAGTAGTGGGTTTCAGAGACTTTTGCCCAGATGAAC-tt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80795444 357 + 112612857 CCAGGGTGGAGCAGGCAG-GTTA-CGCTCCAGTTGTTTCAGCTTCA-GTTTTTCAAAGGCCAGAACTTGGACGTAAC--GATGTACTCCAGGCTCCAGGGCAGTGAGGTAGGTGTGTGGCAGTTGCTACGGTTGCCTGCTAAGAAGACATCACTAagaatttcccttataagcccatttctaggttggtaaattaaagataataaaattcttccaggctgaaatttggcaAGCTGTTCACAAACTTCTCTGCAAATGCACT---TCTTGCTGCAGAAACCCTTTGAAAC--------TGG-TTCCATTCACCTTCATGTACTGGTTCCACC----ATAGAAAGTAGTGGGTTTCAGAGACTTTTGCCCAGATGAAC-tt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76844241 356 + 107442819 CCAGGGTGGAGCAGGCAG-GTTA-CGCTCCAGTTGTTTCAGCTTCA-GTTTTTCAAAGGCCAGAACTTGGACGTAAC--GGTGTACTCCAGGCTCCAGGGCAGCGAGGTAGGTGTGTGGCAGTTGCTACGGTTGCCTGCTAAGAAGACATCACTAAGAATTTCCCTTATAAGCCCATTTCTAGGTTGGTaaatcaaagataataaaattcttCCAGGCTGAAATTTGGCAAGCTGTTCACAAACTTCTCTGCAAATGCACT---TCTTGCTGCAGAAACCC-TTGAAAC--------TGG-TTCCATTCACCTTCATGTACCGGTTCCACC----ATAGAAAGTAGTGGGTTTCAGAGACTTTTGCCcagatgaac-tt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81108137 358 + 108555830 CCAGGGTGGAGCAGGCAG-GTTA-CGCTCCAGTTGTTTCAGCTTCA-GTTTTTCAAAGGCCAGAACTTGGACGTAAC--GGTGTACTCCAGGCTCCAGGGCAGTGAGGTAGGTGTGTGGCCGTTGCTACGGTTGCCTGCTAAGAAGACATCACTAagaatttcccttataagcccatttctaggttggtaaattaaagataataaaattcttccaggctgaaatttggcaAGCTGTTCACAAACTTCTCTGCAAATGCACT---TCTTGCTGCAGAAACCCTTTGAAAC--------TGG-TTCCATTCACCTTCATGTACCGGTTCCACC----ATAGAAAGTAGTGGGTTTCAGAGACTTTTGCCCAGATGAACttt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111327946 358 - 210400635 CCAGGGGGGAGCAGGCAGAGTTAGGGCTCCAGTTGTTCCAGATTCA-GTTTTTCAAAGGCCAAAACTTGGACATAGC--AGTCTA-TCCAGGCTCCAGGGCGGTGAGGTAGGTGTGTGGCAGTTGCTATGGTTGCCTGCTAAAAAGACATCACTAAGAATTTCCCTTATAAGCCCATTTTTAGGTTGGTAAATTAAAGATAATAAAATTCTTCCAAGCTGAAATTTGGCAAGCTGTTCACAAGCCTCTCTGCAAATGCACT---TCTTGCTGCAGAAACCCTTTGAAAC--------TGA-TTCCATTCACCTCCGTGCACTTGATCCACC----GTAGAGTGTGGTGGGTTTCAGAGACTTTTATCCAGATGCAC-tt i calJac3.chr1 I 323 C 0 s mm10.chr19 37986150 332 - 61431566 CCAGGGCAGAGCAGACAA-GTTG-AGCTTCTATT-CTACAGATCCA-AGTC-TCAACGGCTGAAATTTGGACACAAC--TGCCCTTTGCACACTCCGAGGCTGCAAGGCAGATGTGTGCCAGCTGCTGTACTTGCTGGTGACACAGTGATCACTGAGAATTCCCCTTA---------CTCTAGATTGGGAAATTAAA-ATGATAAAATTGCCCCGGGTTAAAATTTGGGAAGCTATTTGAAAACC----------TGCGCT-----TTATTGCAGAAACCCTTTGAAAC--------AGA-GTCCAGACACTTCTGTGGGCTGCATTCACC----ACA-AAAGCTGTGAATGTCACAGACTTTTACCCACAAGTCC-TT i mm10.chr19 C 0 I 14 s canFam3.chr1 35230305 357 - 122678785 ---AGGCAGAAGAGGCAG-GGTA-GGTCTCCGTCCTTCTAGGGCAATGTTTTTCAAAGGCCAGAACTTGGACATAACCAAGTGCACTCCAGA----GGGGCAGTGATG----TGTGTGCCAGCTCCGATAGCTGCTTACTGAGAGGGCAACACTAAGAAGTTCTGTGATAAGCCCATTTCTAGGTCGGTAAATTAAGGATGGTAAAATTGTCGCAGGTGGCATTTTGGCAAGCTGTTCCCAAGCCTCTCTACAAATGTACTCCATCTTGCGGCAGAAACCTTCAGAAAC--------TGGTTTCCATCAACCTCTGTGCGTCTGAGCCACCCTAGATAGAAAGTTATAGGTTTCAGAGACTTTTGCCCGCAGGTAT-TT i canFam3.chr1 C 0 I 16 a score=1382582.000000 s hg38.chr9_GL383541v1_alt 23079 484 + 171286 c-tttttttttttttctttaagttctgggatacatgtgcagaatgtgcaggtttgttacacaggtataaatgtga-atggtggtttgctgcacctatcatcccgtcatctaggttttaagccccgcatgctttaggtatttgtcctaatactctccctccccttgcgccccacccccaacaggccccggtgtgtgaagttcccctccttgtgtccgtgtgttctcattgttcaactcccacttatgagtgagaacatgaggtgtttggttttctgttcctgtgttagtttgctgagaatgatggcttccagcttcatccatgtccctgcaaaggacataaactcactctttggtattgctgcatagtattccatgctgtatatgtgctacattttctttatccagtctatcactgatgggcatttgggttggttccatgtctttgctattgtaaatagtgctgcaataaacatatgtgCCAGATGC s panTro4.chr9 68588587 484 + 137840987 c-tttttttttttttctttaagttctgggatacatgtgcagaatgtgcaggtttgttacacaggtataaatgtga-atggtggtttgctgcacctatcatcccgtcatctaggttttaagccccgcatgctttaggtatttgtcctaatactctccctccccttgcgccccacccccaacaggccccggtgtgtgaagttcccctccctgtgtccgtgtgttctcattgttcaactcccacttatgagtgagaacacgaggtgtttggttttctgttcctgtgttagtttgctgagaatgatggcttccagcttcatccatgtccctgcaaaggacataaactcactctttagtattgctgcatagtattccatggtgtatatgtgctacattttctttatccagtctatcactgatgggcatttgggttggttccatgtctttgttattgtaaatagtgctgcaataaacatatgtgCCAGATGC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64741646 479 + 135191526 c--ttttttttttttctttaagttctgggatacatgtgcagaatgtgcaggtttgttacacaggtataaatgtgacatggtggtttgctgcacctatcaacccgtcatctaggttttaagcctcgcatgctttaggtatttgtcctaatactctccctctccttgcgccccacccccaacaggccctggtgtgtgaagttcccctccctgtgtccatgtgttctcattgttcaactcccacttatgagtgagaacatgaggtgtttggttttctgttcctgtgttagtttgctgagaatgatggcttccagcttcatccatgttcctgcaaagaacataaactcactctttggtattgctgcatagtattccatggtgtgtatgtgctacattttctttatccagtctatcattgatgggcatttgggtta-----aagtgtttgctattgtaaatagtgctgcaataaacatatgtgCCAGATGC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57782295 486 - 122973662 cttttccttttttttctgtaagttctgggatacatatgcagaacgtgcaggtttgttacacaggtataaatgtgacatggtggtttgctgcacctatcaacccgtcatctaggttttaaaccccgcatgctttaggtatttgtcctaatatgctccctccccttgcgccccaccctcgacaggtcccggtgtgtaaagttcccctccctgtgtccatgtgttctcattgttcaactcccacttatgagtgagaacatgaggtgtttggttttctgttcctgtgttagtttgctgagaatgatggcttctagcttcatccatgtccctgcaaaggatataaactcactcttttgtattgctgcatagtattccatggtgtatatgtgctacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtaaatagtgctgcaataaacatatgtgCCAGATGC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79714979 476 + 112192347 t--------ttttttctttaagttatgggatacatgcgcagaatgtgcaggtttgttacaccactatatatgtgacatggtggtttgctccacctatcaacccattatctaggttttaa-ccccacatgctttgggcatttgtcctaatgctctccctccccttatcccccgcccgcgacagaccctggtgtgtgaagctccccttgc-gtgtccatgtgttctcactgttcaactcccacttatgagtgagaacatgaggtatttggttttctgttcgtgtgttagtttgctgagaatgatggcttccagcttcatccatgtccctgcaaaggacgtaaactcactcttgtttgttgctgcatagtattccatggtgtatatgtgctacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctgttgtaaatagtgctgcaataaacatatgtgCCGGATGC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80795801 476 + 112612857 t--------ttttttctttaagttatgggatacatgcgcagaacgtgcaggtttgttacaccactatatatgtgacatggtggtttgctccacctatcaacccatcatctaggttttaa-ccccacatgctttgggcatttgtcctaatgctctccctccccttatcccccacccccaacagaccctggtgtgtgaagttccccttgc-gtgtccatgtgttctcactgttcaactcccacttatgagtgagaacatgaggtatttggttttctgttcctgtgttagtttgctgagaatgatggcttccagcttcatccatgtccctgcaaaggacgtaaactcactcttttgtgttgctgcatagtattccatggtgtatatgtgctacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctgttgtaaatagtgctgcaataaacataTCTGCCGGATGC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76844597 476 + 107442819 t--------ttttttctttaagttatgGGTTACATgcgcagaacgtgcaggtttgttacacggcTATATatgtgacatggtggtttgctccacctatcaacccatcatctaggttttaa-ccCCACATGCTTTGggcatttgtcctaatgctctccctccccttgccccccacccccgacaggccctggtgtgtgaagttcccctccc-gtgtccttgtgttctcactgttcaactcccacttatgagtgagaacatgaggtatttggttttctgttcctgtgttagtttgctgagaatgatggcttccagcttcatccatgtccctgcaaaggacataaactcactCTTTtgtattgctgcatagtattccatggtatatatgtgctatattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctgttgtaaatagtgctgcaataaacatatgtgccggatgc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81108495 476 + 108555830 t--------ttttttctttaagttatgggatacatgcgcagaacgtgcaggtttgttacacggctatatatgtgacatggtggtttgctccacctatcaacccatcatctaggttttaa-ccccacatgctttgggcatttgttctaatgttctccctccccttgccccccacccccgacaggccctggtgtgtgaagttcccctccc-gtgtccatgtgttctcactgttcaactcccacttattagtgagaacatgaagtatttggttttctgtttctgtgttagtttactgagaatgatggcttccagcttcatccatgtccctgcaaaggacataaactcactcttttgtattgctgcatagtattctatggtatatatgtgctacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctgttgtaaatagtgctgcaataaacatatgtgccggatgc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111328304 478 - 210400635 t-----tttttttttttttaagttctgggatacatgtgcagaatgtgcagatttgttacataggtatacatgttccatgggggtttgctgcagccatcaaccc---atctaggttttaagtcccatgtgcattaggtatttgtcctaatgctctccctccccttggcccccacccctgacaggccccagtgtgtgattttcccctccctgtgtccatgtgttctcattgtccaagtcccacttatgagtgagaatatgcagtatttggttttctgctcctgtgttaatttgctgagaatgatggcctccagctttatccacgtccctgcaaagagcatgaactcgttcttttttatggctgcatggtaatccatggtgtatatgtgccacattttctttatgcagtctgtcattaatgggcatttgggttggttctaagtctttgctattgtaaatagtgttgcaataaatattcatgCCAGATGC i calJac3.chr1 C 0 C 0 e mm10.chr19 37986482 14 - 61431566 I e canFam3.chr1 35230662 16 - 122678785 I a score=4095.000000 s hg38.chr9_GL383541v1_alt 23563 1 + 171286 A s panTro4.chr9 68589071 1 + 137840987 A i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64742125 1 + 135191526 A i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57782781 1 - 122973662 A i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79715455 1 + 112192347 A i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80796277 1 + 112612857 A i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76845073 1 + 107442819 a i papAnu2.chr15 C 0 I 306 s chlSab2.chr12 81108971 1 + 108555830 a i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111328782 1 - 210400635 A i calJac3.chr1 C 0 C 0 s mm10.chr19 37986496 1 - 61431566 A i mm10.chr19 I 14 C 0 e canFam3.chr1 35230662 16 - 122678785 I a score=3321.000000 s hg38.chr9_GL383541v1_alt 23564 1 + 171286 C s panTro4.chr9 68589072 1 + 137840987 C i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64742126 1 + 135191526 C i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57782782 1 - 122973662 C i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79715456 1 + 112192347 C i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80796278 1 + 112612857 C i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76845380 1 + 107442819 c i papAnu2.chr15 I 306 C 0 s chlSab2.chr12 81108972 1 + 108555830 c i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111328783 1 - 210400635 T i calJac3.chr1 C 0 C 0 s mm10.chr19 37986497 1 - 61431566 C i mm10.chr19 C 0 C 0 e canFam3.chr1 35230662 16 - 122678785 I a score=1129051.000000 s hg38.chr9_GL383541v1_alt 23565 315 + 171286 TTCTTATATGTCCATGGTCCGTAGGTTAATTTATTGTGGAGAGAACAATGCAAAAGGCCAGAGAAGGAAGGTAAGTTGGGACACAAATCTGCGAACTGGGGTTTCATCACAGGAGAATCAAatctggaggtagttggaaaagtctccttgtctctaaatatcccctttgctgcctgaaatagtttctgaggttcatgcctttga----ttta---cagtattaagtccctagatgtccctgattacagttcgagtgtctctATTTCATGGCCACTTTAAA---ATATGCTTTATCTCCACTGGACACAG-AATAGGTAAGTTTTGA s panTro4.chr9 68589073 315 + 137840987 TTCTTATATGTCCATGGTCAGTAGGTTAATTTATTGTGGAGAGAACAATGCAAAAGGCCAGAGAAGGAAGGTAAGTTGGGACACAAATCTGCAAATTGGGGTTTCATCACAGGAGAATCAAatctggaggtagttggaaaagtctccttgtctctaaatatcccctttgctgcctgaaatagtttctgaggtttatgcctttga----ttta---gagtattaagtccctagatgtccctgattacagttcgagtgtctctATTTCATGGCCACTTTAAA---ATATGCTTTATCTCCACTGGACACAG-AATAGGTAAGTTTTGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64742127 315 + 135191526 TTCTTATATGTCCATGGTCAGTAGGTTAATTTATTGTGGAGAGAACAATGCAAAAGGCCAGAGAAGGAAGGTAAGTTGGGACACAAATCTGCAAATTGGGATTTCATCACAGGAGAATCAAATCTGGAGGTAGTTGGAAAAGTCTCCTTGTCTCTAAATATCCCCTTTGCTGCCTGAAATAGTATCTGAGGTTCATGCCTTTGA----TTTA---CAGTATTAAGTCCCTAGATGTCCCTGATTACAGTTCCAGTGTCTCTATTTCATGGCCACTTTAAA---ATATGCTTTATCTCCACTGGACACAG-AATAGGTAAGTTTTGA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57782783 315 - 122973662 TTCTTATATGTCCATGGTCAGTAGGTTAATTTATTGTGGAGAGAACAATGCAAAAGGCCAGAGAAGGAAGGTAAGTTGGGACACAAATCTGCAAATTGGGGTTTCATCACAGGAGAATCAAatctggaggtagttggaaaagtctccttgtctctaaatatcccctttgctgcctgaaatagtatctgaggttcatgcctttga----ttta---gagtattaaatccctagatgtccctgattacagttccagtgtctctATTTCATGGCCACTTT-AA---ATATGCTTTATCTCCACTGGACACAGAAATAGGTAAGTTTTGA i nomLeu3.chr1a C 0 I 105 s rheMac3.chr15 79715457 315 + 112192347 TTCTTATATGTCCATGGTCAGTAGGTTAGTTTATAGTGGAGAGAACAATGCAAGAGGCCAGAGAAGGGAGGTTAGTTGGGACACAAATCTGCAAATTAGGATTTCATCACAGGAGAATCAAatctggaggtagttggaaaagtcgccttgtctctaaatatctcgtttgctgcctgaaatagtatctgaggttcacgcctttga----tttg---gagtattaagtccctagatatccctgattacagttccagtgtctctATTTCATGGCCACTTTAAA---ATATGCTTTAACTCCACTGGGCACAG-AATAGGTAAGTTTTGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80796279 315 + 112612857 TTCTTATATGTCCATAGTCAGTAGGTTAGTTTATAGTGGAGAGAACAATGCAAGAGGCCAGAGAAGGGAGGTTAGTTGGGACACAAATCTGCAAATTAGGATTTCATCACAGGAGAATCAGATCTGGAGGTAGTTGGAAAAGTCGCCTTGTCTCTAAATATCTCGTTTGCTGCCTGAAATAGTATCTGAGGTTCACGCCTTTGA----TTTG---GAGTATTAAGTCCCTAGATATCCCTGATTACAGTTCCAGTGTCTCTATTTCATGGCCACTTTAAA---ATATGCTTTATCTCCACTGGGCACAG-AATAGGTAAGTTTTGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76845381 315 + 107442819 ttcttaTGTGTCCATGGTCAGTAGGTTAATTTATAGTGGAGAGAACAATGCAAGAGGCCAGAGAAGGGAGGTTAGTTGGGACACAAATCTGCAAATTAGGATTTCATCACAGGAGAATCAAATCTGGAGGTAGTTGGAAAAGTCGCCTTGTCTCTAAATATCTCCTTTGCTGCCTGAAATAGTATCTGAGGTTCACGACTTTGA----TTTG---GAGTATTAAGTCCCTAGATAACCCTGATTACAGTTCCAGTGTCTCTATTTCATGGCcactttaaa---atatgctttatcTCCACTGGGCACAG-AATAGGTAAGTTTTGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81108973 315 + 108555830 ttcttatgtgtccatggtcagtaggttaatttataatGGAGAGAACAATGCAAGAGGCCAGAGAAGGGAGGTTAGTTGGGACACAAATCTGCAAATTAGGATTTCATCACAGGAGAATCAAATCTGGAGGTAGTTGGAAAAGTCGCCTTGTCTCTAAATATCTCCTTTGCTGCCTGAAATAGTATCTGAGGTTCATGCCTTTGA----TTTG---TAATATTAAGTCCCTAGATAACCCTGATTACAGTTCCAGTGTCTCTATTTCATGGCCACTTTAAA---ATATGCTTTATCTCCACTGGGCACAG-AATAGGTAAGTTTTGA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111328784 314 - 210400635 TTTTTACATGTCCATGGTCAGTAGCTTAATTTATTGTGGAGAGAACAATGCAAAAGGCCAAAGAAGGGAGGTAAGTGGGGAAACAAATCTGCAAATTAGAGTTTCAGCACAGGAGAATCAAATCTGGGGGTAGTTGGAAAAGTTTCCTTGTCTCTAAATCTCTACTTTGCTGCCTGAAATAGTAATTGAGGTTCACGGCTTTGA----TTTA---TAGTATTAAGTCCCCAGATATCCCTGATGGCAGTTCCAGTGTCTCTATTTCATGGCCAC-TTAAA---ATATACTTTATCTCCACTGGGCACAG-AATAGGTAAGTTTTGA i calJac3.chr1 C 0 C 0 s mm10.chr19 37986498 241 - 61431566 TTCCTATATGTCCTTGGTCAGTAGGTTAACCTACAGTGGAGTGAGCAATGTCAATGCCCAGTGAAGAGTG--AATTCCAGAAATCAATTTGTAAATTAGGATCTCCT-AAAGGAG-----GGTCTGGGAATAATTAACAAAAACTCTAAGCCACAGGATCACTCCCCTGCTGTGGGAAAC--TATGTGAGGCCCATTTCTTC-A----TTTATCTGAGTACTAGGTTTCTA------------CACATTTTTAGACCACCTAGTTCAT---------------------------------------------------------- i mm10.chr19 C 0 C 0 s canFam3.chr1 35230678 314 - 122678785 TTTCTATATGTCCTTGGTCAGTAGGTTAACACACTGTGGAGAGAACTACGCTAAGGCCCAGTGCAGGGAATTATGTAGGGAAACAAATCTGCAAATTAGAATTTCATCACAGGAAAATCAGATCTGGGGGTAATTGCATAAGTCCTCT--TCTTGAAATGTCTCCTCAGCTGCCCCAAATTGTATTTGAGGTCCACCCTTTTGATTTCTTTA---GAGCATTAGGTCTCTAAGAGTCTCTGATTGCAATTCCACTGTCTCTAGTTTGTAGCCATCTTGTAGCCATATACTTGATCTCCGCTGGGCACGC-------TGAGTTTCAC i canFam3.chr1 I 16 C 0 a score=44248.000000 s hg38.chr9_GL383541v1_alt 23880 14 + 171286 CCAGGCATTGTGTT s panTro4.chr9 68589388 14 + 137840987 CCAGGCATTGTGTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64742442 14 + 135191526 CCAGGCATTGTGTT i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79715772 14 + 112192347 CCAGGCATTGTGTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80796594 14 + 112612857 CCAGGCATTGTGTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76845696 14 + 107442819 CCAGGCATTGTGTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81109288 14 + 108555830 CCAGGCATTGTGTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111329098 14 - 210400635 CCAGGCATTGTGTC i calJac3.chr1 C 0 C 0 s mm10.chr19 37986739 12 - 61431566 --AGTCATTGTGTT i mm10.chr19 C 0 I 57 s canFam3.chr1 35230992 11 - 122678785 CTAG---TGGTGTC i canFam3.chr1 C 0 C 0 e nomLeu3.chr1a 57783098 105 - 122973662 I a score=373195.000000 s hg38.chr9_GL383541v1_alt 23894 151 + 171286 GGCTTGGGTTATTTATCCCAATGGCAGTTTCCCCCAGGGAATGCCAGGTGCACCA-TACAGGGCATCGGGCACTGAAACCCAGTTTTGTCTACTTTCTCATTTTGCCCATGGTTGTCCTGCTTTCTTGATCTCCCTCTATTCTTTTTGTAGA s panTro4.chr9 68589402 152 + 137840987 GGCTTGGGTTATTTATCCCAATGGCAGTTTCCCCCAGGGAATGCCAGGTGCACCAGTACAGGGGATCGGGCACTGAAACCCAGTTTTGTCTACTTTCTCATTTTGCCCATGGTTGTCCTGCTTTCTTGATCTCCCTCTATTCTTTTTGTAGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64742456 152 + 135191526 GGCCTCGGTTATTTATCCCAATGGCAGGTTCCCCCAGGGAACGCCAGGTGCACCAGTACAGGGGATCGGGCACTGAAACCCAGTTTTGTCTACTTTTTCATTTTGCCCATGGTTGTCCTGCTTTCTTGATCTCCCTCTATTCTTTTTGTAGA i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79715786 152 + 112192347 GGCTTGGGTTATTTATTTCAATGGCAGGTTCCCCCAGGGAACGCCAGGTGCACTAGTACAGGGAATCGGGCACTGAAACCCGGTTTTGTCTACTTTCTCATTTTGCCAATGGTTGTCCTGTTTTCTTGATCTCCCTCTATTCTTTCTGTAGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80796608 152 + 112612857 GGCTTGGGTTATTTATTTCAATGGCAGGTTCCCCCAGGGAACGCCAGGTGCACTAGTACAGGGGATCGGGCACTGAAACCCGGTTTTGTCTACTTTCTCATTTTGCCAATGGTTGTCCTGTTTTCTTGATCTCCCTCTATTCTTTTTGTAGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76845710 152 + 107442819 GGCTTGGGTTATTTATTCCAATGGCAGGTTCCCCCAGGGAACGCCAGGTGCACTAATACAGGGGATCAGGCACTGAAACCCGGTTTTGTCTACTTTCTCATTTTGCCAATGGTTGTCCCGTTTTCTTGATCTCCCTCTATTCTTTTtgtaca i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81109302 152 + 108555830 GGCTTGGGTTATTTATTCCAATGGCAGGTTCCCCCAGGGAACGCCAGGTGCACTAGTACAGGGGATCAGGCACTGAAACCTGGTTTTGTCTACTTTCTCATTTTGCCAATGGTTGTCCCGTTTTCTTGATCTCCCTCTATTCTTTTTGTACA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111329112 152 - 210400635 AGCTTGGGTTGCTTATCCTAATAATGGGTTCCCCCAGGGAATGGCAAGTGTACCAGTTCAGGGGATTGAGCACTGAAACCCAGCTTTGTCTACTTTCTCATTTTGCCAGTGGTTACCTTGTTTTCTTGATCTCCCTCTATTCTTTTTGCAGA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35231003 124 - 122678785 TGCTTGGGTTGTGTACCACAGTGGAAGGTGCCCCCAGAAACAGGGGGTGGCACCTGTGCAGGTGACTGGGTGCAGCAGCCCAGCCTCTTCTACTTTCTAGATTTGCCAACAGTGGCTCGA-----TTGA----------------------- i canFam3.chr1 C 0 C 0 e mm10.chr19 37986751 57 - 61431566 I e nomLeu3.chr1a 57783098 105 - 122973662 I a score=322956.000000 s hg38.chr9_GL383541v1_alt 24045 106 + 171286 ATATTTTAATTTTCCCTAACTTGTCAAGGGAAGTGATACTATGTCAGAC-TCAAATTTGAACTCACTTCTAAATCTTAAGTTTGAATTGAAT-CCGGCAAAGAAGGGA s panTro4.chr9 68589554 106 + 137840987 ATATTTTAATTTTCCCTAACTTGTCAAGGGAAGTGATACTATGTCAGAC-TCAAATTTGAACTCACTTCTAAATCTTAAGTTTGAATTGAAT-CCGGCAAAGAAGGGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64742608 107 + 135191526 ATATTTTAATTTTCCCTAACTTGTCAAGGGAAGTGATACTATGTCAGACTTCAAATTTGAACTCACTTCTAAATCTTCAGTTTGAATTGAAT-CCAGCAAAGAAGGGG i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79715938 104 + 112192347 ATATTTTAATTTTCCCTAACTTGTCAAGGGAAGTGATATTA--TCAGAC-TCAAATTAGAACTCACTTCTAAATCTTAAGTTTGAACTGAAT-CCAACAAAGAAGTGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80796760 104 + 112612857 ATATTTTAATTTTCCCTAACTTGTCAAGGGAAGTGATATTA--TCAGAC-TCAAATTAGAACTCACTTCTAAATCTGAAGTTTGAACTGAAT-CCAGCAAAGAAGTGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76845862 104 + 107442819 atattttaattttccctaACTTGTCAAGGGAAGTGATATTA--TCAGAC-TCAAATTAGAACTCACTTCTAAATCTTAAGTTTGAACTGAAT-CCAGCAAAGAAGTga i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81109454 104 + 108555830 ATATTTTAATTTTCCCTAACTTGTCAAGGGAAGTGATATTA--TCAGAC-TCAAATTAGAACTCACTTCTAAATCTTAAGTTTGAACTGAAT-CCAGCAAAGAAGTGA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111329264 106 - 210400635 ATATTTTAGTTTTCCCTAACTTGTCAAGGGAAGTGATATTATGTCAGAC-TCAAATTTGAACTCACTTCTAAATCTTAACTTTGAATTAAAT-CCAGGAAACAAGGGA i calJac3.chr1 C 0 C 0 s mm10.chr19 37986808 105 - 61431566 atatataaatTTTCCT--ACTTATCGAAGTAGGTGACATTATGTCAAAC-TCAAACTGGAACTTGCTCCGAAATCTTAGGTTTGAATTCGGTATTACCAAATAAGAGA i mm10.chr19 I 57 C 0 s canFam3.chr1 35231127 106 - 122678785 ATGTTTTTATTTCCTCCTATTTTTCAAGGGGGGTGAGATTATGTTAGAC-TTGAATTTGAATTTGCTTCTCAATTTTAGGTTTGAATTAAAT-CCAAGAAATAAGAGA i canFam3.chr1 C 0 C 0 e nomLeu3.chr1a 57783098 105 - 122973662 I a score=22104.000000 s hg38.chr9_GL383541v1_alt 24151 11 + 171286 TCTGttt-ttgt s panTro4.chr9 68589660 11 + 137840987 TCTGttt-ttgt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64742715 11 + 135191526 TCTGttt-ttgt i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79716042 11 + 112192347 TCTGGTT-TTGT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80796864 11 + 112612857 TCTGGtt-ttgt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76845966 11 + 107442819 tctggtt-ttgt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81109558 11 + 108555830 TCTGGtt-ttct i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111329370 12 - 210400635 TCTGTTTGTTGT i calJac3.chr1 C 0 C 0 s mm10.chr19 37986913 11 - 61431566 CACATTT-TTAT i mm10.chr19 C 0 I 34 e canFam3.chr1 35231233 0 - 122678785 C e nomLeu3.chr1a 57783098 105 - 122973662 I a score=629391.000000 s hg38.chr9_GL383541v1_alt 24162 329 + 171286 tt------------------------------------------tttgttttgtctctttcagaaggagtctcactctgttgcccaggctggagtccaatggcgtgacctcgggtcactgcaaacttcgcctctcgggttcaagtgattctcctgcctcagcctctggagtaactggggcatgcacctgtagtaccatctactcaggaggcatgtgctaccaccccaggctaatttttgtatttttagtagagatgggatttcaccatgtt----------------------------------------------------ggccaggctggtcttgaactcctgaccttgagtgatccacccgcttcgac--------------------ctcccaaagtactgggattacaggcatgagccaccgcgcccagccAGGGT s panTro4.chr9 68589671 333 + 137840987 ttg--------------------------------------ttttttgttttgtctctttgagaaggagtctcactctgttgcccaggctggagtccaatggcgtgacctcgggtcactgcaaacttcgcctctcgggttcaagtgattctcctgcctcagcctctggagtaacaggggcatgcacctgtagtcccacctactcaggaggcatgtgctaccaccccaggctaatttttgtatttttagtagagatgggatttcaccatgtt----------------------------------------------------ggccaggctggtcttgaactcctgaccttgagtgatccaaccgcttcgac--------------------ctcccaaagtactgggattacaggcatgagccacagcgcccagccAGGGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64742726 333 + 135191526 ttg--------------------------------------ttttttgttttgtctttttgagaaggagtctcactctgttgcccaggctgaagtccaatggcatgacctcggggcactgcaaacttcgcctctcaggttcaagcgattctcctgcctcagcctctggagtagctggggcatgcacctgtagtcccacctactcaggaggcatgtgctaccatctcaggctaatttttgtatttttagtagagttggggtttcaccatgtt----------------------------------------------------ggccaggctggtcttgaactcctgaccttgagtgatccacccgcttcggc--------------------ctcccaaagtactgggatttcaggcatgagccaccgtgcccagccAGGGA i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79716053 323 + 112192347 TTG--------------------------------------ttttttgttttgtttttttgagaaggagtctcactctgttgcccaggctggagtccaatggcgtgacctcgggtcactgcaaacttcacctctcaggttcaagtgattctcttgcctcagcctctcgagtagctggggcatgcacctgtagtcccacctactcaggaggcatgtgccaccatcccaggctaatttt--------------------------------ttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--------------------------------------------------nnnnnnnnnnnnnnnnnnnnctcccaaagtactgggattacaggtgtgagccactatgcccagcTAGGGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80796875 333 + 112612857 ttg--------------------------------------ttttttgttttgtttttttgagaaggagtctcactctgttgcccaggctggagtccaatggcgtgacctcgggtcactgcaaacttcacctctcaggttcaagtgattctcttgcctcagcccctcaagtagctggggcatgcacctgtagtcccacctactcaggaggcatgtgccaccatcccaggctaatttttgtatttttagtagagatggcgtttcaccatgtt----------------------------------------------------ggccaggctggtcttgaattcctgaccgcaggtgatccacccgcctcggc--------------------ctcccaaagtgctgggattacaggtgtgagccactgtgcccagcTAGGGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76845977 333 + 107442819 ttg--------------------------------------ttttttgttttgtttttttgagaaggagtctcactctgttgcccaggctggagtccaatggcgtgacctcgggtcactgcaaacttcacctctcaggttcaagcgattctcttgcctcagcctctcgagtagctggggcatgcacctgtagtcccacctactcaggaggcatgtgccaccatcccaggctaatttttgtatttttagtagagatggcatttcaccacgtt----------------------------------------------------ggccaggctggtcttgaattcctgacctcaggtgatccacccacctcggc--------------------ctcccaaagtactgggattacaggtgtgagccactgtgcccaaccagggA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81109569 333 + 108555830 ttg--------------------------------------ttttttgttttgtttttttgagaaggagtctcactctgttgcccaggctggagtccaatggcgtgacctcgggtcactgcaaacttcacctctcaggttcaagcgattctcctgcctcagcctctcgagtagctggggcatgcacctgtagtcccacctactcaggaggcatgtgccaccatcccaggctaatttttgtatttttagtagagatggcgtttcaccatgtt----------------------------------------------------ggccaggctggtcttgagttcctgacctcaggtgatccatccgcctcggc--------------------ctcccaaagtactgggattacaggtgtgagccactgtgcccagccAGGGA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111329382 346 - 210400635 TTGTTTTGTGTGTGTGTGTGGtttttttttttttttttttttttttttttttgcttttttgaaaaagaatcttgctcctttg-ccaagctggagtgcaatggcctgaccttgggtcattgcaaccttcacctcccaagttcaagtgattctcccacttcagccttctgagtagctggga-------------------ctac-----aggtgtgaaccactactcctagctaatttttgtatttttaatagagatggagtttcgccatgtt----------------------------------------------------ggcctggctggtctcaaactcctgacctcaggcgatctgcctgcctcagt--------------------ctcccaccttactgggattacaggcatgaaccactgtgcctgaccAGGGA i calJac3.chr1 C 0 C 0 e mm10.chr19 37986924 34 - 61431566 I e canFam3.chr1 35231233 0 - 122678785 C e nomLeu3.chr1a 57783098 105 - 122973662 I a score=8656.000000 s hg38.chr9_GL383541v1_alt 24491 4 + 171286 TCTG s panTro4.chr9 68590004 4 + 137840987 TCTG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64743059 4 + 135191526 TCTG i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79716376 4 + 112192347 TCCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80797208 4 + 112612857 TCCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76846310 4 + 107442819 TCCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81109902 4 + 108555830 TCCA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111329728 4 - 210400635 TCTG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35231233 4 - 122678785 TCTA i canFam3.chr1 C 0 C 0 e mm10.chr19 37986924 34 - 61431566 I e nomLeu3.chr1a 57783098 105 - 122973662 I a score=42546.000000 s hg38.chr9_GL383541v1_alt 24495 12 + 171286 TTTTATCCTGTG s panTro4.chr9 68590008 12 + 137840987 TTTTATCCTGTG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64743063 12 + 135191526 TTCTATCCTGTG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57783203 12 - 122973662 TTTTATCCTGTG i nomLeu3.chr1a I 105 C 0 s rheMac3.chr15 79716380 12 + 112192347 TTTTATCCTGTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80797212 12 + 112612857 TTTTATCCTGTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76846314 12 + 107442819 TTTTATCCTGTG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81109906 12 + 108555830 TTTTATCCTGTG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111329732 12 - 210400635 TTTTATCCTGTG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35231237 12 - 122678785 TCGAATCCTATA i canFam3.chr1 C 0 C 0 e mm10.chr19 37986924 34 - 61431566 I a score=2312117.000000 s hg38.chr9_GL383541v1_alt 24507 662 + 171286 AAAATCTTTCT---CCATTCATTTATCCTAT--AAAAAAA-------------ATCATCTTTATTCA----CAGCTCAGAGGATCTGGAAACCCCTTTGAGCAGCAGTCCTCAGCTGA-AATCGGGGCTGCTTATTCCATTTTCCTGATGCCAGCTGTGGGGGCAGAGGTCCTTTGCCCTGAGGATTCTTGGAGACCATGCGGTTGGCCTTGCATCCAAACAGGCACAATTCAAAAGAATCATTGAGTGGATATTGGCTTCATTCTCATTTTTGGACATTGTGGCTTAGCACCT---------TTAACTGAACTCTGTGAGGAAGCCACTTGAGGAGCTGAGGCAGGG--------TAAAGCCAAGTCTAGGTGTTGCCCCTTAATTAGGAGTTTGGAACACTCAGCTACCTGGAAGAGGAAGGCAGCTGCAGAAATGTCTCAGGTGAACAGGAAGTAAAAAGAGAAATTGAAAGCACTTGTTGCAGAGAAGACCTACATTGTTTTT---CCATGGTAGGAGTCAGGGTTTGAGAAATCGCCTAATACAGAAAAAGGTTGGATGGCTTTTGTACCCAGGAGTGAGTGATAGCATCTGAGGCAGGCAGGTGGGCTACAGGGTTGGGCATCATGAAGGGGTGGGGTGGGGG-CATGGT----AGAATGTCCCGAAATCACG-TGTAAATACATGTGTG-------------TTTGTCTCTCTGATA s panTro4.chr9 68590020 660 + 137840987 AAAATCTTTCT---CCATTCATTTATCCTAT--AAAAAAA---------------CATCTTTATTCA----CAGCTCAGAGGATCTGGAAACCCCTTTGAGCAGTGGTCCTCAGCTGA-AATCGGGGCTGCTTATTCCATTTTCCTGATGCCAGCTGTGGGGGCAGAGGTCCTTTGCCCTGAGGATTCTTGGAGACCATGCAGTTGGCCTTGCATCCAAACAGGCACAATTCAAAAGAATCATTGAGTGGATATTGGCTTCATTCTCATTTTTTGACATTGTGGCTTAGCACTT---------TTAACTGAACTCTGTGAGGAAGCCACTCGAGGAGCTGAGGCAGGG--------TAAAGCCAAATCTAGGTGTTGCCCCTTAATTAGGAGTTTGGAACACTCAGCTACCTGGAAGAGGAAGGCAGCTGCAGAAATGTCTCAGGTGAAGAGGAGGTAAAAAGAGAAATTGAAAGCACTTGTTGCAGAGAAGAACTACATTGTTTTT---CCACGGTAGGAGTCAGGGTTTGAGAAATCGCCTAATACAGAAAAAGGTTGGATGGCTTTTGTACCCAGGAGTGAGTAATAGCATCTGAGGCAGGCAGGTGGGCTACAGGGTTGGGCATCATGAAGGGGTGGGGTGGGGG-CATGGT----AGAATGTCCCGAAATCACG-TGTAAATACATGTGTG-------------TTTGTCTCTCTGATA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64743075 659 + 135191526 AAAATCTTTCT---CCATTCATTTATCCTAT--AAAAAAT---------------CATCTTTATTCA----CAGCTCAGAGGATCTGGGAACCCCTTTGAGCAGTGGTCCTCAGCTGA-AATCGGGGCTGCTTATTCCATTTTCCTGATGCCAGCTGTGGGGACAGAGGTCCTTTGCCCTGAGGATTCTTGGAGACCATGCAATTGGCCTCACATCCAAACAGGCACAATTCAAAAGAACCATTGAGTGGATTTTGGCTTCATTCTCATTTTTGGACATTGTGGCTTAGCACCT---------TTAACTGAACTCTGTGAGGAAGCCACTCGAGGAGCTGAGGCAGGG--------TAAAGCCAAGTCTAGGTGTTGTCCCTTAATTAGGAG-TTGGAACACTCAGCTACCTGGAAGAAGAAGGCAGCTGCAGAAATGTCTCAGGTGAAGAGGAGGTAAAAAGAGAAATTGAAAGCACTTGTTGTAGAGAAGCCCTACATTGTTTTT---CCACGGTAGGAGTCAGCATTTGAGAAATCACCTAATACAGAGAAAGGCTGGATGGCTTTTGTACCCGGGAGTGAGTGATAGCATCGGAGGCAGGCAGGTGGGCTACAGGGCTGGGCATCACAAACGGGTGGGGTGGGGA-CACGGT----AGAATGTCCCGAAATCACG-TGTAAACGCATGTGTG-------------TTTGTCTCTCTCATA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57783215 660 - 122973662 -AAATCTTTCT---CCATTCATTTATCCTAT--AAAAAAA--------------TCATCTTTATTCA----CAGCTCAGAGGATCTGGGAACCCCTTTGAGCAGTGTTCCCCAGCTGA-AATCAGGGCTGCTTATTCCATTTTCCTGAAGCCAGCTGTGGGGGCAGAGGTCCTTTGCCCTGAGGATTCTTGGAGACCATGCAGTTGGCCTCGCATCCAAACAGGCACGATTCAAAGGAATCATTGAGTGGATTTTGGCTTCATTCTCATTTTTGGACATTGTGGCTTAGCACCT---------TTAACTGAACTCTGTGAGGAAGTCACTCGAGGAGCTGAGGCAGGG--------TAAAGCCAAGTCTAGGTGTTGCCGCTTAATTAGGAGTTTGGAACACTCAGCTACCTGGAAGAGGAAGGCAGCTGCAGAAATGTCTCAGGTGAAGAGGAGGTAAAAAGAGAAATTGAAAGCACTTGTTGTAGAGAAGACCTACATTGTTTTT---CCACAGTAGGAGTCAGGGTTTGAGAAATCGCCTAATACAGAAAAATGTTGGATGGCTTTTGTACCCAGGAGTGAGTGATAGCATCTGAGGCAGGCAGGTGGGCTACAGGGTTGGGCATCACGAAGAGGTGGGGTGGGGG-CATGGT----AGAATGTTCCAAAATCATG-TGTAAATACATGTGTG-------------TTTGTCTCTCTAACA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79716392 662 + 112192347 AAAATCTTTCT---CCATTCAGTTATCCTGT--AAAAAAA-------------ATCATCTTTATTCA----CAGCTCAGAGGATCTGGGAACCCCTTTGAGCAGTGGTCCTCAGCTGA-AATCCAGGCTGCTTATTCCATTTTCCTGATGCCAGCTGCGGGGGCAGAGGCCCTTTGCCCTGAGGATTCTTGGAGACCATGCAGTTGGCCTCGCATCCAAACAGGCACAATTCAGAAGAATCATTGAGTGGATTTTGGCTTCATTCTCATTTTTGGACATCGTGGCTTAGCACCT---------TTAACTGAACTCTGTGAGGAAGCCTCTCGAGGAGCTGAGGCAGGG--------GGAAGCCAAGTCTAGGTGTTACCCCTTAATTGGGAGTTTGGAACACTCAGCTACCTGGAAGAAGAAAGTAGCTGCAGAGATGTCTCAGGTGAAGAGGAGGTAAAAAGAGAAAATGAAAGTATTTGTTATAGAGAAGACCTACATTGTTTTT---CCACAGTAGGAGTCAGGGCTTGAGAAATCGCCTAATACAGAAAAAGGCTGGATGGCTTTTGTATCCAGGAGTGAGTGATAGCATCTGAGGCAGGCAAGTGGGCTACAGGGTTGGGCATCACAAAGAGGTGGGGTGGGGG-CACGGT----AGAATGTCCCGAAATCACG-TGTAAATACATGTGTG-------------TTTCTCTCTCTGATA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80797224 658 + 112612857 AAAA----TCT---CCATTCAGTTATCCTGT--AAAAAAA-------------ATCATCTTTATTCA----CAGCTCAGAGGATCTGGGAACCCCTTTGAGCAGTGGTCCTCAGCTGA-AATCCAGGCTGCTTATTCCATTTTCCTGATGCCAGCTGCGGGGGCAGAGGCCCTTTGCCCTGAGGATTCTTGGAGACCATGCAGTTGGCCTCGCATCCAAACAGGCACAATTCAGAAGAATCATTGAGTGGATTTTGGCTTCATTCTCATTTTTGGACATCGTGGCTTAGCACCT---------TTAACTGAACTCTGTGAGGAAGCCTCTCGAGGAGCTGAGGCAGGG--------GGAAGCCAAGTCTAGGTGTTACCCCTTAATTAGGAGTTTGGAACACTCAGCTACCTGGAAGAAGAAAGTAGCTGCAGAGATGTCTCAGGTGAAGAGGAGGTAAAAAGAGAAAATGAAAGTATTTGTTATAGAGAAGACCTACATTGTTTTT---CCATAGTAGGAGTCAGGGCTTGAGAAATCGCCTAATACAGAAAAAGGCTGGATGGCTTTTGTATCCAGGAGTGAGTGATAGCATCTGAGGCAGGCAAGTGGGCTACAGGGTTGGGCATCACAAAGGGGTGGGGTGGGGG-CACGGT----AGAATGTCCCGAAATCACG-TGTAAATACATGTGTG-------------TTTCTCTCTCTGATA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76846326 662 + 107442819 AAAATCTTTCT---CCATTCAGTTATCCTAT--Taaaaaa-------------aTCGTCTTTATTCA----CAGCTCAGAGGATCTGGGAACCCCTTTGAGCAGTGGTCCTCAGCTGA-AATCCGGGCTGCTTATTCCATTTTCCTGATGCCAGCTGCAGGGGCAGAGGCCCTTTGCCCTGAGGATTCTTGGAGACCATGCAGTTGGCCTCGCATCCAAACAGGCACAATTCAGAAGAATCATTGAGTGGATTTTGGCTTCATTCTCATTTTTGGACATCGTGGCTTAGCACCT---------TTAACTGAACTCTGTGAGGAAGCCTCTCgaggagctgaggcaggg--------gaaagcCAAGTCTAGGTGTTGCCCCTTAATTAGGAGTTTGGAACACTCAGCTACCTGGAAGAAGAAAGTAGCTGCAGAAATGTCTCAGGTGAAGGGgaggtaaaaagagaaaatgaaagcatttgtTATAGAGAAGACCTACATTGTTTTT---CCACAGTAGGAGTCAGGGCTTGAGAAATTGCCTAATACAGAAAAAGGTTGGATGGCTTTTGTATCCAGGAGTGAGTGATAGCATCTGAGGCAGGCAAGTGGGCTACAGGGTTGGGCATCAcaaaggggtggggtggggg-catggT----AGAATGTCCCGAAATCACG-TGTAAATACATGTATG-------------TTTCTCTCTCTGATA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81109918 664 + 108555830 AAAATCTTTCT---CCATTCAGTTATCCTATAAAAAAAAA-------------ATCATCTTTATTCA----CAGCTCAGAGGATCTGGGAACCCCTTTGAGCAGTGGTCCTCAGCTGA-AATTTGGGCTGTTTATTCCATTTTCCTGATGCCAGCTGCGGGGGCAGAGGCCCTTTGCCCCGAGGATTCTTGGAAACCATGCAGTTGGCCTCGCATCCAAACAGGCACAATTCAGAAGAATCATTGAGTGGATTTTGGCTTCATTCTCATTTTTGGACATCGTGGCTTAGCACCT---------TTAACTGAACTCTGTGAGGAAGCCTCTCGAGGAGCTGAGGCAGGG--------GAAAGCCAAGTCTAGGTGTTGCCCCTTAATTAGGAGTTTGGAACACTCAGCTACCTGGAAGAAGAAAATAGCTGCAGAAATGTCTCAGGTGAAGAGGAGGTAAAAAGAGAAAATGAAAGCATTTGTTATAGAGAAGACCTACATTGTTTTT---CCACAGTAGGGGTCAGGGCTTGAGAAATCGCCTAATACAGAACAAGGTTGGATGGCTTTTGTATCCAGGAGTGAGTGATAGCATCTGAGGCAGGCAAGTGGGCTACAGAGTTGGGCATCACAAAGGGGTGGGGTGGGGG-CATGGT----AGAATGTCCTGAAATCACA-TGTAAATACATGCGTG-------------TTTCTCTCTCTGATA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111329744 653 - 210400635 AAAATCTTTCT---TCATTAATTTATCCTAT-TTTAAAAA-------------GTCATCTTTATTCA----CAGCTCAGAGGATCTGGGAACCCCTTTGAGCAGTGGCCCTCAGCTGA-AATCAAGGCTCCTTATTCTATTTTCCTGATGCCAGCTGTAGGTGTAAAGGCCCGTTGCCCTGAGGATTCTTGTAGACCATGCAGTTGGTCTTGCATCCAAAAAGGCACAATTTGAAAGAATCATTGAGTGGATTTTGGCTTCATTCTCATTTTTGGATGTTGTGGCTTAGCACGT---------TGAACTGAACTCTGTGAGAAAGCCGCTCGAGAAGCAGAGGCCGGG--------TAAAGCCAAGCCTAGGTGCTGCCCTTTAATTAGGAGTTTGGAATACTCAGCTACCTGGAAGAGGAAGGTAGACGGAGAAATGTCTCAGGTGAAGAGGAGGTAAAAAGAGAAA----------TTTTTATAGAGAAGACCTGCATTGTTCTT---CCACAGTAGGAGTCAGGGTTTGAGAAATTGCCTAATACAGAAAAAGTGTGGATGGCTTTTGTACCCAGGGGTGAGTGATAGCATCTGAGGCAGGCAGGTGGGCTACAGGGTTGGGCATCATGAAGGAGTGGGGTGGGGT-CATGGT----AGAATGTCCTGAAATCACG-TGTAAATGCATGTGTG-------------TGTCTCTCTCTGATA i calJac3.chr1 C 0 C 0 s mm10.chr19 37986958 555 - 61431566 AGAATCACCTT---TTATTCATTCATC-----------------------------------ATTCA----CAGACTACCGGAT-------CCCTTTTGAGCAACAATCCTCAGAAAAGAATTGAGATTGCCCCTTCCACTTTCCCCCTGACAGCTGTCAGAGCAGAAGGAGTTGGGCC-GAGGGTCCTTAGAGACCAGACAGTTGGCCTCAT-----------CAAAATTCATATTAGTAACTGAGTGGGCTTTGCTCTCAGTTTTGGTTT--GGTATCTTAACCTTCCATCTAAAAAGCCACTATCTGAACTCTGGGAGGAA----------------------GA--------ACAAACTAAACTTAGGTACTGTTCTC------------------------CTACTTAGGAGAAGAAGGTACATGTGAGGATTATTCTGTTAA-----AGGTAAAGA-AGAAACTCA--------TTTATGAGGAAGAGCTACTTTGTGCGT---CTTTGATAGTGTTCAAGGAGATAGAAGTTTCCCAATACAAGAAACAGATGTGTGCCTTTTGTTCCCCAGCATGCACTACAATAT--------GGAAGCTGGG---AAAGAATAACCATT-------GGCAGGGTGGGGA-CATGGTA---AGGGTGTACTATTATCTCATTGCAATGATATGCATA-------------CATCGCTTTCTAGCA i mm10.chr19 I 34 C 0 s canFam3.chr1 35231249 693 - 122678785 AAAATCTCCCTTAGTCCTTCATTCATCCTCA--AAAAAAACCCCAAACCACACAACACATTTATTCATTCGCAGTTCAGAGACTATTGGAAGCTCTTAGGACGGTGGTCCTCGGGTAA-AATCGAGACAGTTGATTCCATTTCCCTAATGCCAGCTGTGGGGGCAGAAGCCCTTCGG-CTGAGGATTCTTGGAGCCCATTACGTAGGCTTCACATTGGAAGAGTCACAA-TCAAATGAGTCATCGGGTGAATTTTGGCTCCACTCT-------GGACACCTTGGCTTAGCACCT---------TTAACCTAGCTCAATAAGGAAGCCGTTGGAGGAACTGAGGAAGGGAGAGAGGTAAAAACCTGACCCAGGTACTGCTCCTTAATTGGAAGCTTGGCACACTAAGCCACCTAGAAGAGGAAGGTAAATACAGAAATGTGTCAGGTGAATGGGCGGTCAACAAGGCATTTCAAAGCTCTTGTTGTAGGGAA--------TGGTTTTTGTACCACAGTGGGGGCTGGGGTTTGAGATATTGCCTAATACAGAAGA-GTTCAGATGGTATTTGTACCTCGGAGCAAGTGATGCTATCTGGGGCAGGAAGGCTGGCTATGAGGTTTGGCACAACCAGGAGGTGACATGGGGGACATGGTAGATAGAGTGCACTGAAATCACA-TGTGTATATCTTTCTGACACCCGCTTTCTTTtttttttttaata i canFam3.chr1 C 0 I 180 a score=3884220.000000 s hg38.chr9_GL383541v1_alt 25169 1116 + 171286 CCCT-TTCCTTCACCCAAACTTGTCCCTTCTCTTTTAAGGACACTCTCAGCTCCTTGGCCATCTGCGTTTCAGTTCTGCACTCAGTCATGTGCCAGTTATTATTAACAGTGATGAATCCTGCCTGCTATTTCTTGAGGCTCAGCTAGAGCCAC-AAATCTGGCAAGGATCCCAGG-----TTCCTGGGAGAGGAGAACCAGTCTT---CTTCCTGCAGACTACAGCTCCTTTCCTGATTTTGGAGGGCTGATTCAGCATCCCACCCTGGCATCACAAAGTTCATAAGG-CCAGGGACGAGTTATGCTCATCTGCATGGGGCTACTTGGTCCTGCATTATGTCTGCAGGTTGTTCT--TAGAGCTCTCTAAGCAGAAG-----------TACAATCCCCACATTGTATGGGGGCTGGAAATCGGCACAAGTCAGGGATGTTCCTTGACACCCTCTGGGAGAGATGGTCGACCCCAGAAATGTGACCTAGTTACACTTGCAGTATCACATGCCATTTCCCGCtgctgccctggctgtgactgctctcaggttgagcatggctgtgctgtgctgtgcCTGAGGGCAGCCTTGCTTCTGCCTTG--CTTCCTGGGAACCCAGATCCTAGAGCTGGGCCTTGGAGGTCATCCAGTGCTG-------CCTCCTCCTA---------------------------------------------CACAGAC---------------CAAGT--CAG-GCAGCCCTTGGACATTGCCTCAGCTCCTTGGCTCTCCACCAGTTCTTTTTCCTCCAGCATTG--------GAGGAAACATCCCTGTCTCCACT--CTGGGTTCTAAACTCTGAAACTTTGTTG--------------TGTTGGAAACTCTTCATCAGAGAGCTAATTATATTTCAGACATGTGGAAGAACTCAGATTCCAAAGATGCAGTGTTTGGGGCCAAACAAAGCCACAAAACACTACATTTTATGCCATACC---------------ATGTA-----------------ACATGTATTCACTCTTTCAGATGTATAGGG-------------------------ATCCC--------------ACCCGTctgtgatcttcagcgtgtagaaaagagcctggcacatagcaggtgctcgatatatatttgttgaatgaaagaaCCTGTTGAATGACT-------GTATTAGATCACAAACATATCCTTAAGTGTTTTCCTACGTGCTCCTGGTTCATTCTGCCCCTTCAAAGGTAGTTCCTTATCATGAAGAACGGCTTAa s panTro4.chr9 68590680 1116 + 137840987 CCTT-TTCCTTCACCCAAACTTGTCCCTTCTCTTTTAAGGACACTCTCAGCTCCTTGGCCATCTGCGTTTCAGTTCTGCACTCAGTCATGTGCCAGTTATTATTAACAGTGATGAATCCTGCCTGCTATTTCTTGAGGCTCAGCTAGAGCCAC-AAATCTGGCAAGGATCCCAGG-----TTCCTGGGAGAGGAGAACCAGTCTT---CTTCCTGCAGACTACAGCTCCTTTCCTGATTTTGGAGGGCTGATTCAGCATCCCACCCTGGCATCACAAAGTTCATAAGG-CCAGGGATGAGTTATGCTCATCTGCATGGGGCTACCTGGTCCTGCATTATATCTGCAGGTTGTTCT--TAGAGCTCTCTAAGCAGAAG-----------TACAATCCCCACATTGTATGGGGGCTGGAAATCGGCACAAGTCAGGGATGTTCCTTGACACCCTCTGGGAGAGATGGTCGACCCCAGAAATGTGACCTAGTTACACTTGCAGTATCACATGCCATTTCCCGCTGCTGCCCTGGCTGTGACTGCTCTCAGGTTGAGCATGGCTGTGCTGTGCTGTGCCTGAGGGCAGCCTTGCTTCTGCCTTG--CTTCCTGGGAACCCAGATCCTAGAGCTGGGCCTTGGAGGTCATCCAGTGCTG-------CCTTCTCATA---------------------------------------------CACAGAC---------------CAAGT--CAG-GCAGCCCTTGGACAGGGCCTCAGCTCCTTGGCTCTCCACCAGTTCTTTTTCCTCCAGCATTG--------GAGGAAACATCCCTGTCTCCACT--CTGGGTTCTAAACTCTGAAACTTTGTTG--------------TGTTGGAAACTCTTCATCAGAGAGCTAATTATATTTCAGACATGTGGAAGAACTCAGATTCCAAAGATGCAGTGTTTGGGGCCAAACAAAGCCACAAAACACTACATGTTATGCCATACC---------------TTGTA-----------------ACATGTATTCACTCTTTCAGATGTATAGGG-------------------------ATCCC--------------ACCCGTCTGCAatcttcagcgtgtagaaaagagcctggcacatagcaggtgctcgatgtatatttgttgaatgaaagaaCCTGTTGAATGACT-------GTATTAGATCACGAACATATCCTTAAGTGTTTTCCTATGTGCTCCTGGTTCATTCTGCCCCTTCAAAGGTAGTTCCTTATCATGAAGAACGGCTTAa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64743734 1115 + 135191526 CCCT-TTCCTTCACCCAAACTTGTCCCTTCTCTTTTAAGGACACTCTCAGCTCCTTAGCCATCTGCGTTTCAGTTCTGCACTCAGTCATGTGCCAGTTATTATTAACAGTGATGAATCCTGCCTGCTATTTCTTGAGGCTCAGCTAGAGCCAC-AAATCTGGCAAGGATCCCAGG-----TTCCTGGGAGAGGAGAGCCAGTCTT---CTTCCTGCAGACTACAGCTCCTTTCCTGATTTTGGAGGGCTGATTCAGCATCCCACCCTGGCATCACAAAGTTCATAAGG-CCAGGGACGAGTTGTGCTCATCTGCATGGGGCTACTTGGTCCTGCATTATGTCTGCAGGTTGTTCT--TAGAGCTCTCTAAGCAGAAG-----------TACAATCCCCACATTGTATGGGGGCTGGAAATCGGCACAAGTCAGGGATGTTCCTTGACACCCTCTGGGAGAGATGGTCGACCCCAGAAATGTGACCTAGTTACACTTGCAGTATCACATGCCGTTTCCCGCTGCTGCCCTGGCTGTGACTGCTCTCAGGTTGAGCATGGCTGTGCTGTGCTGTGCCTGAGGGCAGCCTTGCTTCTGCCTTG--CTTCCTGGGAACCCAGATCCTAGAGCTGGGCCTTGGAGGTCATCCAGTGCTG-------CCTCCTCATA---------------------------------------------CACAGAC---------------CAAGT--CAG-GCAGCCCTTGGACAGGGCCTCAGCTCCTTGGCTCTCCACCAGTTCTTTTTCCTCCAACATTG--------GAGGAAACATCCCTGTCTCCACT--CTGGGTTCTAAACTCTGAAACTTCGTTG--------------TGTTGGAAACTCTTCATCAGAGAGCTAATTATATTTCAGACATGTGGAAGAACTCAGATTCCAAAGATGCAGTGTTTGGGGCCAACCAAAGCCACAAAACACTACATTTTATGCCATACC---------------ATGTA-----------------ACATGTATTCACT-TTTCAGATGCATAGGG-------------------------ATCCC--------------ACCTGTCTGCAatcttcagcatgtagaaaagggcctggcacatagcaggtgctggatatgtatttgttgaatgaaagaaCCTGTTGAATGAAT-------GTATTAGATCACGAACATATCCTTAAGTGTTTTCCTATGTGCTCCTGGTTCATTCTGCCCCTTCAAAGGTAGTTCCTTATCATGAAGAACGGCTTAa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57783875 1119 - 122973662 CCCT-TT-CTTGTCCCAAACTTGTCCCTTCTCTTTTAAGGACACTCTCAGCTCCTTGGCCATCTGCGTTTCAGTTCTGCACTCAGTCATGTGCCAGTTATTATTAACAGTGATGAATCCTGCCTGCTATTTCTTGAGGCTCAGCTAGAGCCAC-AAATCTGGCAAGGATCCCAGG-----TTCCTGGGAGAGGAGAGCCAGTCTTCTCCTTCCTGCAGACTACATCTCCTTTCCTGATTTTGGAGGGCTGATTCAGCATCCCACCCTCGCATCACGAAGTTTATAAGGCCCGGGGACGAGTTATGCTCATCTGCATGGGGCTACTTGGTCCTGCATTATGTCTGCAGGTTGTTCT--TAGAGCTCTCTAAGCAGAAG-----------TACAATCCGCATATTGTATGGGGGATGGAAATTGGCACAAGTCGGGGATGTTCCTTGACACCCTCTGGGAGAGATGGTTGACCCCAGAAATGTAACCTAGTTATACTTGCAGTATCACATGCCATTTCctgctgctgccctggctgtgactgctctcaggttgagcatggctgtgctgtgctgtgcCTGAGGGCAGCCTAGCTTCTGCCTTG--CTTCCTGGGAACCCAGATCCTCGAGCTGGGCCTTGGAGGTCATCCAGTGCAG-------CCTCCTCATA---------------------------------------------CACAGAC---------------CAAGT--CAG-GGAGCCCTTGGACAGGGCCTCATCTCCGTGGCTCTCCACCAGTTCTTTTTCCTCCAGCACTG--------GAGGAAACATCCCTGTCTCCACT--CTGGGTTCTAAACTCTGAAACTTTTTTG--------------TGTTGGAAACTCTTCATCAGAGAGCTAATTATATTTCAGACATGTGGAAGAACTCAGATTCCAAAGATGCAGTATTTGGGGCCTACCAAAGCCACAAAACACTACATTTTATGCCATACC---------------ATGTA-----------------ACATGTATTCACTCTTTCAGATGTATAAGG-------------------------ATCCC--------------ACCTGTCTGCAatcttcagcatgtagaaaagggcctggcacatagcaggtgctcaatatatatttgttgaatgaaagaaCCTGTTGAATGAAT-------GTATTAGATCCTGAACATATCCTTAAGCATTTTCCTATGTGTTCCTGGTTCATTCTGCCCCTTCAAAGGTAGTTCCTTATCATGAAGAACGGCTTAa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79717054 1105 + 112192347 CCTTCTTCCTTCACCCAAACTTGTCCCTTCTCTTTTAAGGACACTCTTGGCTCCTTGGCCATCTGCGTTTCAGTTCTGCACTCAGTCATGTGCCAGTTATTATTAACAGTGATGAATCCTGCCTGATATTTCTTGGG-----GCTGGAGCCAC-AAATCTGGCAAGGATCTCAAG-----TTCCTGGGAGAGGACAGCCAGTCTTCTCCTTCCTGCAGA------CTCCTTTCCTGACTTCGGAGGGCTGATTCAGCATCCCACCCTGACATCACAAAGTTCAGAAGG-CCAGGGACGAGTTATGCTCATCTGCGTGGGGCTACTTGGTCCTGCATTATGTCTGCAGGTTGTTCT--TAGAGCTCTCTAAGCAGAAG-----------TACAATCCTCACATTGTATGGGGGCTGGAAATCGGCACGAATCAGGGCTGTTCCTTGACACCCTCTGGAAGAGATGGTCGACTCCAGAAATGTGACCTAGTTACCCTGGCAGTATCACATGCCATTTCCTGCTGCTGCCCTGGCTGTGACCGCTGTCAGGTTGAGCATGGCTGTGCTGTGCTGTGTCTGAGGGCAGCCTTGCTTCTGCCTTG--CTTCCTGGGAACCCAGATCCTAGAGCTGGGCCTTGGAGGTCGTCCAGTGCAG-------CCTCCTCATA---------------------------------------------CACGGAC---------------CAAGT--CAG-GCAGCCCTTGGACAGGGCCTCAGCTCCTTGGCTCTCCACCAGTTCTTTTTCCTCCAGCATTG--------GAGGAAAAATCCCTGTCTCCACT--TTGGGTTCTAAACTCTGAAACTTTGTTG--------------TGTTGGAAACTCTTCATCAGAGAGCTAATTATATTTCAGACATGTGGAAGAACTCAGATTCCAAAGATGCAGTGTTTGGAGCCTACCAAAGCCAC-AAACACTACATTTTATGCCATACC---------------ATGTA-----------------ACATGTATTCACTCTTTCAGATGTATAGGG-------------------------ATCCC--------------ACCTGTCTGCGatcttcagcctgtagaaaggggcctggcacataccaggtgctccatagatatttgttgaatgaaagaaCCTGTTAAATGAAT-------GTATTAGATCACGAACATATCCTTAAGCATTTTCCTATGTGCTCCTGGTTCATTCTGCTCCTTTAAAGGTAGTTCCTT---ATGAAGAATGGCTTAa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80797882 1114 + 112612857 CCTTCTTCCTTCACCCAAACTTGTCCCTTCTCTTTTAAGGACACTCTTGGCTCCTTGGCCATCTGCGTTTCAGTTCTGCACTCAGTCATGTGCCAGTTATTATTAACAGTGATGAATCCTGCCTGATATTTCTTGGG-----GCTGGAGCCAC-AAATCTGGCAAGGATCCCAAG-----TTCCTGGGAGAGGACAGCCAGTCTTCTCCTTCCTGCAGACTACAGCTCCTTTCCTGACTTCGGAGGGCTGATTCAGCATCCCACCCTGACATCACAAAGTTCAGAAGG-CCAGGGACGAGTTATGCTCATCTGCGTGGGGCTACTTGGTCCTGCGTTATGTCTGCAGGTTGTTCT--TAGAGCTCTCTAAGCAGAAG-----------TACAATCCTCACATTGTATGGGGGCTGGAAATCGGCACGAATCAGGGCTGTTCCTTGACACCCTCTGGGAGAGATGGTCGACTCCAGAAATGTGACCTAGTTACCCTGGCAGTATCACATGCCATTTCctgctgctgccctggctgtgaccgctgtcaggttgagcatggctgtgctgtgctgtgtctgAGGGCAGCCTTGCTTCTGCCTTG--CTTCCTGGGAACCCAGATCCTAGAGCTGGGCGTTGGAGGTCGTCCAGTGCAG-------CCTCCTCATA---------------------------------------------CACGGAC---------------CAAGT--CAG-GCAGCCCTTGGACAGGGCCTCAGCTCCTTGGCTCTCCACCAGTTCTTTTTCCTCCAGCATTG--------GAGGAAAAATCCCTGTCTCCACT--TTGGGTTCTAAACTCTGAAACTTTGTTG--------------TGTTGGAAACTCTTCATCAGAGAGCTAATTATATTTCAGACATGTGGAAGAACTCAGATTCCAAAGATGCAGTGTTTGGAGCCTACCAAAGCCAC-AAACACTACATTTTATGCCATACC---------------ATGTA-----------------ACATGTATTCACTCTTTCAGATGTATAGGG-------------------------ATCCC--------------ACCTGTCTGCGatcttcagcctgtagaaaggggcctggcacataccaggtgctccatagatatttgttgaatgaaagaaCCTGTTAAATGAAT-------GTATTAGATCACGAACATATCCTTAAGCATTTTCCTATGTGCTCCTGGTTCATTCTGCCCCTTTAAAGGTAGTTCCTTATCATGAAGAATGGCTTAa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76846988 1114 + 107442819 CCTTCTTCCTTCACCCAAACTTGTCCCTTCTCTTTTAAGGACACTCTCGGCTCCTTGGCCATCTGCGTTTCAGTTCTGCACTCAGTCATGTGCCAGTTATTATTAACAGTGATGAATCCTGCCTGATATTTCTTGGG-----GCTGGAGCCAC-AAATCTGGCAAGGATCCCAAG-----TTCCTGGGAGCGGACAGCCAGTCTTCTCCTTCCTGCAGACTACAGCTCCTTTCCTGACTTGGGAGGGCTGATTCAGCATCCCACCCTGACATCACAAAGTTCATAAGG-CCAGGGACGAGTTATGCTCATCTGCGTGGGGCTACTTGGTCCTGAGTTATGGTTGCAGGTTGTTCT--TAGAGCTTTCTAAGCAGAAG-----------TACAATCCTCACATTGTATGGGGGCTGGAAATCGGCATGAGTCGGGGCTGTTCCTTAACACCCTCTGGGAGAGATGGTCGACCCCAGAAATGTGACCTAGTTACCCTTGCAGTATCACATGCCGTTTCCTGCTGCTGCCCTGGCTGTGACCGCTGTCAGGTTGAGCAtggctgtgctgtgctgtgtctGAGGGCAGCCTTGCTTCTGCCTTG--CTTCCTGGGAACCCAGATCCTAGAGCTGGGCCTTGGAGGTCATCCAGTGCAG-------CCTCCTCATA---------------------------------------------CACGGAC---------------CAAGT--CAG-GCAGCCCTTGGACAGGGCCTCAGCTCCTTGGCTCTCCACCAGTTCTTTTTCCTCCAGCACTA--------GAGGAAAAATCCCTGTCTCCACT--TTGGGTTCTAAACTCTGAAACTTTGTTG--------------TGTTGGAAACTCTTCATCAGAGAGCTAATTATATTTCAGACATGTGGAAGAACTCAGATTCCAAAGATGCAGTGTTTGGAGCCTACCAAAGCCAC-AAACACTACATTTTATGCCATACC---------------ACGTA-----------------ACATGTATTCACTCTTTCAGATGTATAGGG-------------------------ATCCC--------------ACCTGTCTGCGATCTTCAGCCTGTAGAAAGGGGCCTGACACATACCAGGTGCTccatagatatttgttgaatgaaagaaccTGTTGAATGAAT-------GTATTAGATCACGAGCATATCCTTAAGCATTTTCCTATGTGCTCCTGGTTCATTCTGCCCCTTTAAAGGTAGTTCCTTATCATGAAGAATGGCTTAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81110582 1114 + 108555830 CCTTCTTCCATCACCCAAACTTGTCCCTTCTCTTTTAAGGACACTCTCGGCTCCTTGGCCATCTGCGTTTCAGTTCTGCACTCAGTCATGTGCCAGTTATTATTAACAGTGATGAATCCTGCCTGATATTTCTTGGG-----GCTGGAGCCAC-AAATCTGGCAAGGATCCCAAG-----TTCCTGGGAGAGGACAGCCAGTCTTCTCCTTCCTGCAGACTACAGCTCCTTTCCTGACTTTGGAGGGCTGATTCAGCATCCCACCCTGACATCACAAAGTTCATAAGG-CCAGGGACGAGTTACGCTCATCTGCGTGGGGTTACTTGGTCCTGCGTTATGTCTGCAGGTTGTTCT--TAGAGCTCTCTAAGCAGAAG-----------TACAATCCTCACATTGTATGGGGGCTGGAAATCGGCATGAGTCGGGGCTGTTCCTTAACACCCTCTGGGAGAGATGGTCAACCCCAGAAATGTGACCTAGTTACCCTGGCAGTATCACATGCCGTTTCCTGCTGCTGCCCGGGCTGTGACCGCTGTCAGGTTGGGCATGGCTGTGCTGTGCTGTGTCTGAGGGCAGCCTTGCTTCTGCCTTG--CTTCCTGGGAACCCAGATCCTAGAGCTGGGCCTTGGAGGTCATCCAGTGCAG-------CCTCCTCATA---------------------------------------------CACGGAC---------------CAAGT--CAG-GCAGCCCTTGGACAGGGCCCCAGCTCCTTGGCTCTCCACCAGTTCTTTTTCCTCCAGCATTG--------GAGGAAAAATCCCTGTCTCCACT--TTGGGTTCTAAACTCTGAAACTTTGTTG--------------TATTGGAAACTCTTCATCAGAGAGCTAATTATATTTCAGACATGTGGAAGAACTCAGATTCCAAAGATACAGTGTTTGGAGCCTACCAAAGCCAC-AAACACTACATTTTATGCCATACC---------------ATGTA-----------------ACATGTATTCACTCTTTCAGATGTATAGGG-------------------------ATCCC--------------ACCTGTCTGCGatcttcagcctatagaaaggggcctggcacataccaggtgctccatagatatttgttgaatgaaagaaCCTGTTGAATGAAT-------GTATTCGATCACGAACATATCCTTAAGCATTTTCCTAGGTGCTCCTGGTTCATTCTGCCTCTTCAAAGGTAGTTCCTTATCATGAAGAACGGCTTAa i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111330397 1102 - 210400635 CCCTCTTCCTTCCCCCAAACGTGTCCCTTCTCTTTTAAGGACACTCTCAGCTCCCTGGCCATCTGCGTTTCAGTTCTGCACTCAGTCATGTGCCAGTTATTATTAACAGTGATGAATCCTGCCTGATATTTCTTAGG-CTCAGCTAGAGCCAA-AAATCTGGCAAGGATCCCAAG-----TTCCTGAGTGAGGAGAGCCAGTCTTCTCCTTCCTGCAGATTACAATTCCTTTCCTGATTTTGGAGGGTTGATTCAGCATCCTACCCTGGCA-----------------------GATGAGTTACGCCCTTCTGCATGGGGCTACTTGCTCCTGCATTATGTCTGCAGATTGTTCT--TAGAGCTCTCTAAGCAGAAG-----------CACAATCCCCACAGTGTATGAAAGCTGGAAATCAGCCTAAGTCTGGGATGTTCCTTGACACCCTCTGGGAGAGATGGATGACCCCAGAAATGTGGTATGGTTATCCTTGAAGTATCGCATGCTGTTTCTTGCTGCTGCCCTGGCTGTGACTACTCTCAGGTTGAGCAC-----CGTTGTCCTGTACCTGAGGACAGCCTTGCTTCTGCCTTG--CTTCCTGGGAACCCAGATTCCAGAGCTAGGCCTTGGAGGTCATCCAGTGCAG-------CCTCCTCATA---------------------------------------------CACAGAC---------------CAAGTCACAG-GCAGCCCTGGGACAGGGCCTCAGCTCCTTGGCTGTCCACCAGTTCCTTTTCCTCCAACATTGCTGCCTGCCTGAAAACATTCATATCTCCACT--CTGGGTTCTAAACTCTGAAACTTCATTG--------------TGTTGGAAACTCTTCAACAGAGAGCTAATTATATTTCAGACTTGTGGAAGAACTCGGATTCCAAAGATGCAGTGTTTGGGGCCTAGCAAAGCCACAAAACACTACATTTTATGCCACACC---------------ATATA-----------------ACATGTATTCACTCTTTCAGATGTATAGGG-------------------------ATCCC--------------ACCTGTCTGCAatcttcagcgtgtggaaaagggcctggcatataacaggtgcttgataaatatttgtggactgaaagaaCCTATTGAATGAAT-------GTCTTAGATCACAAACATGTCCTTAAGCATTTTCCTATGTGCTCTTGCTTCATTCTGCCCCTTCAAAGGTAGTTCCTTATTATGAAGAACAGCTTAC i calJac3.chr1 C 0 C 0 s mm10.chr19 37987513 1119 - 61431566 CCCCTTTTCAAAACCAAAACTCTGTCCTTATCTCTTTAGGATATGC----CCCATTGGCCATCTGAGTTTCAGTTCATAA--TAATCATGTGCCAATTATTATTAATAGTGATAAATCCTGCCTGATTCTTCTTGGG------------TCACGAAGTCTGGCAAGGATC----G-----TTAT--GGATGAGAAAGTCACTCTC-----TCCT-----------TTACTATGCCAACCTTGGAAGGCCACTGGAACCTCTGACCCAGACATCACCAGCTTGTTAAGG--------------AAGCTCTTGTCC------CCAC-TGGTCCTGGGTTACCTCTGCTCACTGTTTT-GTGGAGCTTTCCCAGAAGAAGCTCCACTCACCCACAATCCT---GCTGGATAGAGGCTGAAACCCAGAACAAGTCTAGAATGTTCCTTAGGTGCCTCTCAAAGAGATA---------------CTGGCTAAGTTGTTCCTGCTGCATCAGCTGCAGCTCTTTGAAGTTACCCTGA-TGTACCTGCTGCCTGTCTAAGTGTGACTGTG-GGCTCTGGGCCTGAG--CAGCTTGGGCCCTGCTCAG--TCTCT---GCATACA-ACGTAAGAGCTGGACCTCAGAGG---TCCAATGTAGGCTATCTGCTTTTCACATTGTAG---------------------------------------CACTGACACTCATAGTTGGGTACAAGTTCCCT-GGGAACCTGGGGCGGGAACCTGTCTCGCCTACTCAATACCA-----TTTTTCTCTA-CATAG--------CTGGTAAA----CTGCCTCTATTTGTTGAGCCCTGACTTCC-AGGCCTCACAC--------------TGTTAGTAACACTTCATCAGAGATCCAGTTGTATATTTAGCATGTGGAAATTCACAGATTCCCAA-AGGTAGTATTTGAGGcctctcagacccacagagaactagatttgatgccatgtctatatgtatgtatgtatgtatatatgtgtgtgtgtgtgtgtgtatgtatatgtgtatAGGTATAAGGTATAGGTATAGATAGATAAAGATATATTCTCTCCAGTTTGTAAGACCTGCGTGCCATCTTCAG--TAGAGGAAAGATCTTGGCTCATAGTTGGAACTCAATACATA---GCTGAATGGATAAA----TTGA-------------GTACCTGACCATGAAAATGGCATTGTGCCTTTTTTCATGTACTACTGTTTT-TCCTTCACCTTCAAAGTCAGTTCCTTATCATAAGAAACAGCTTGA i mm10.chr19 C 0 C 0 s canFam3.chr1 35232122 1124 - 122678785 -CCCCTTTTTTTATCCATACCCCTCCCTTCTCTCTTGAAAAAACTTTCAGTTACTGGGCCCCCTGAGTTTTGATTCTATGCTCTGTCATG-----------------------AAA------CTGATATTTCA---------GCTAGAGCCAA-AAGTCTGGCTAGGATCCCAAGTGGCCTTCCTGGAAGAGGGGGAACAGTCCT----CCCTTGTGAATTACAGCTCTGTTCCTGACTCTAGAAGATCGACACAGCACCCCACCCTGACATCAC-AACTTCATAAGG-C--------AGTT---CCCAACCCCACGGGCCTGCTTAG-ACTACATTGCCTCTGCGTATTGGTCTCCTGGTGCTCTGTAAGGAGAAA-----------CAT-ACCCCCATGTTATGTAGAGACTGGAGAGCAG-ACAAGTCTGGGGTGTTCCTTGGATGTCTCTTGAAGAGACGCTCAACCCCAGCAAATGGCTTGGGATACTCCTGCAGCATCTCATGCCACTCCTGGGGGCTGCCCTGGCTGCTGCTGCTGTCAGGTTAATCATGGTTATCATGCGTTGTGCCCGAGCCCAGTTTGGCTTGGCCCTGGCCCTGCCTGGGATCCTATATCCTAAAACTgggctttagaagtcatccagtgcaa-------cctcctcattttccagaggagcacactggagtgcagacaggCTAGCAGTCATGGTCATGAAC---------------CAGGG--AAGTGCAACCTGGGGGCAGGGCCTT-GTTTCTTGGCTCTCCACTTACTCTTGCTGCCCCTCTCCTA--------------ACAGCCCTGTCTCC-----AGGAGTCCTGGACCTTGAAGCTTTGGTGTATTGATAATAGAATGTTGGAAAGTCTTCATCAAAGAATTAATTATATTTCATACATATGGAAGAATATGAGTTCCAAAGGTACAGTGCTTCGGGCCCACCAAACCCATAAACCACTATGTTTTATGCCATACT---------------GCATA-----------------ATG---ATTCACTCTTTTAGATGGGTAGAT-------------------------CTCCC--------------ACCTGCCTGCAatcttcagcgtataggaaagggtcttgcacatagtagatgctcaataaatatttgttgaatggatgaatTTGCTGTATGAATAAACCCAGTATTGGATAATTAAAAAGTCCTTAGGCATTTTCATGTGTGTTCCTGTTTCATTATGCCCCTTCAAAGGTAATTATCTGTC-TGATTGATGGCATAA i canFam3.chr1 I 180 I 52 a score=225092.000000 s hg38.chr9_GL383541v1_alt 26285 68 + 171286 gcctcgtggttagtataagctctggagctgggtgacttggattagaatccaggctctgctctttcaag s panTro4.chr9 68591796 68 + 137840987 gcctcgtggttagtataagctctggagctgggtgacttggattagaatccaggctctgctctttcaag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64744849 68 + 135191526 gcctcgtggttagtataagctctggagctgggtaacttggattagaatccaggctctgctctttcaag i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57784994 68 - 122973662 gcctcatggttagtataagctctggagctgggtaacttggattagaatccaggctctgttctttcaag i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79718159 68 + 112192347 gcctcgtggttaatataagctctgaagctgggtaacttggattagaatccaggctctgccctttcaag i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80798996 68 + 112612857 gcctcgtggttaatataagctctgaagctgggtaacttggattagaatccaggctctgccctttcaag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76848102 68 + 107442819 GCCTCGTGGTTAATATAAGCTCTGGAGCTGGGTAACTTGGATTAGAATCCAGGCTCTGCCCTTTcaag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81111696 68 + 108555830 gcctcgtggttaatataagctctggagctgggtaacttggattagaatccaggctctgccctttcaag i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111331499 68 - 210400635 GTTTCATTgttaatagaaactctggagctagataacttggattagaatccaggctctgccctttcaag i calJac3.chr1 C 0 C 0 s mm10.chr19 37988632 60 - 61431566 ACA----GGTTGTTAGGAG-TCTAGA--TGGTCAGCTTGTATTAGAA-CTAGGCACTGTTCCTTCAAG i mm10.chr19 C 0 I 698 e canFam3.chr1 35233246 52 - 122678785 I a score=160200.000000 s hg38.chr9_GL383541v1_alt 26353 54 + 171286 ctgtgtgggcttgggaaagtcatttatcctctctatgtctcagtttccttggct s panTro4.chr9 68591864 54 + 137840987 ctgtgtgggcttgggaaagttatttatcctctctatgtctcagtttccttggct i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64744917 54 + 135191526 ctgtgtgggcttgggaaagttatttatcctctctatgtctcagtttccttggct i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57785062 54 - 122973662 ttgtgtgggcttgggaaagttatttaacctctctatgtctcagtttccttggct i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79718227 54 + 112192347 ctgtgtggtcttgggaaagttatttatcctctctatatctcagtttccttgggt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80799064 54 + 112612857 ctgtgtggtcttgggaaagttatttatcctctctatgtctcagtttccttgggt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76848170 54 + 107442819 ctgtgtggtcttgggaaagttatttatcctctctatgtctcagtttccttgggT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81111764 54 + 108555830 ctgtgtggtcttgggaaagttatttatcctctctatgtctcagtttccttgggt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111331567 50 - 210400635 ctgtgtggacttgggaa----atgtatcctctctatgtctcagtttcctggggt i calJac3.chr1 C 0 C 0 e mm10.chr19 37988692 698 - 61431566 I e canFam3.chr1 35233246 52 - 122678785 I a score=1734827.000000 s hg38.chr9_GL383541v1_alt 26407 543 + 171286 ataaaattgagatagtaaaagtacctatcacatgagattgttgtgaagactatatacattaatacgtttaaCACAGAGTG--------AGCACT---TTATACATGTAACCTGATGTTATTCTTACTATTACTTGATG------TGTCTTTTATCAACATCATAAACTTTATAAATAAACATTAGTTTT-TCTAACTCAGACAGCTTTCCAAAACAGCTTTTGGGGA--------CCTAAGGAGAGTGTGGTTTTCTTTTGCTTATAGTTATGCCATCTACTCTTCATTCCAACCAGAGAAAGAACCTTACTTTTC---TTATTTGGCTCTAGTTTAAGCACTGGTAAGCCTTATCTCACTTTTGTGTGGCTGAACA----AGGTGTGGATATAAAGTAATAACACTGAGTTTCATACTTAGTGTGTAGTCTATCCCAGCAGATGATACATTTTT--CTCTATAAATTATTGGTTGTTGTCAAGAATGCTTTGCTTTCTGCTTCATTATTCTCCCACCCCAGCCT-------------------------GCTAGTGCCTCAGCATCAATTGGCTCCATTAG-TGATGGTGCTGGTGCCTTCTA------------------- s panTro4.chr9 68591918 543 + 137840987 ataaaattgagatagtaaaagtacctatcacatgagattgttgtgaagactatatacattaatacgtttaaCACAGAGTG--------AGCACT---TTATACATGTAACCTGATGTTATTCTTACTATTACTTGATG------TGTCTTTTATCAACATCATAAACTTTATAAATAAACATTAGTTTT-TCTAACTCAGACAGCTTTCCAAAACAGCTTTTGAGGA--------GCTAAGGAGAGTGTGGTTTTCTTTTGCTTATAGTTATGCCATCTACTCTTCATTCCAACCAGAGAAAGAACCTTACTTTTC---TTATTTGGCTCTAGTTTAAGCACTGGTAAGCCTCATCTCACTTTCGTGTGGCTGAACA----AGGTGTGGATATAAAGTAATAACACTGAGTTTCATACTTAATGTGTAGTCTATCCCAGCAGATGATACATTTTT--CTCTATAAATTATTGGTTGTTGTCAAGAATGCTTTGCTTGCTGCTTCATTATTCTCCCACCCCAGCCT-------------------------GCTAGTGCCTCAGCATCAGATGGCTCCATTAG-TGATGGTGCTGGTGCCTTCTA------------------- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64744971 543 + 135191526 ataaaattgagatagtaaaagtacctatcacatgagattgttgtgaagactatatacattaatacaATTAACACAGAGTG--------AGCACT---TTATACATGTAACCTGATGTTATTCTTACTATTACTTGATG------TGTCTTTTGTCAACATCATAAACTTTATAAATAAACATTAGTTTT-TCTAACTCAGACAGCTTTCCAAAACAGCTTTTGGGGA--------GCTAAGGAGAGTGTGGTTTTCTTTTGCTTATAGTTATGCCATCTACTCTTCATTCCAACCAGAGAAAGAACCTTATTTTTC---TTATTTGGCTCTAGTTTAAGCACTGGTAAGCCTCATCTCACTTTTGTGTGGCTGAACA----AGGTGTGGATATAAAGTAATAACACTGAGTTTCATACTTAGTATGTAGTCTCTCCCAGCAGATGACACATTTTT--CTCTATAAATTATTGGTTGTTGTCAAGAATGCTTTGCTTCCTGCTTCATTATTCTCCCACCCCAGCCT-------------------------GCTAGTGCCTCAGCATCAATTGGCTCCATTAG-TGATGGTGCTGGTGCCTTCTA------------------- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57785116 539 - 122973662 ataaaattgagatagtaaaagtacatatcacatgagattgttgtgaagactatatacgttaatacatttaacacagagtg--------agcact---ttatacatgtaaactgATGTTATTCTTACTATTACTTGATG------TGTCTTTAATCAACATCATAAACTTTATAAATAAACATTAGTTTT-TCTAACT----CAGCTTTCCAAAACAGCTTTTGGGGA--------GCTAAGGAGAGTGTAGTTTTCTTTTGCTTATAGTTATGCCATCTACTCTTCATTCCAACCAGAGAAAGAACCTTATTTTTC---TTATTTGGCTCTAGTTTAAGCACTGATAAGCCTCATCTCACTTTTGTGTGGCTGAGCA----AGGTGTGGATATAAAGTAATAACACTGAGTTTCATACTTAGTATGTAGTCTCTCCCAGCAGATGACACATTTTT--CTCTATAAATTATTGGTTGTTGTCAAGAATGCTTTCCTTCCTGCTTCACTATTCTCCCACCCCAGCCT-------------------------GCTAGTGCCTCAGCATCAATTGGCTCCATTAG-TGATGGTGCTGGTGCCTTCTA------------------- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79718281 544 + 112192347 ataaaattgagacagtaaaagtacctatcacatgacattgttgtgaagactatatacattaatacatttaaCACAGAGTG--------AGCACT---TTATACATGTAACCTGATGTTATTCTTACTCTTACTTGATA------TGTCTTTTATCAACATCATAAACTTTATAAAGAAACATTAGTTTT-TCTAATTCAGACAGCTTTCCAAAAGAGCTTTTGGGGA--------GCTAAGGAGAGTGTAGTTTTCTTTTGCTTATAGTTATGCCATCTACTCTTCATTCCAACCAGAGAAAGAACCTTATTTTTCATATCATTTGGCTCTAGTTTAAGCACTGG--AGCCTCATCTCACTTTTGTGTGGCTGAACA----AGGTGTGGATATAAAGTAATAACACTGAGTTTCACACTTAGTATATAGTCTCTCCCAGCAGATGACACGTTTTT--CTCTATAAATTGTGGGTTGTTGCCAAGAATGCTTTGCTTCCTGCTTCATTATTCTCCCATCCCAGCCT-------------------------GCTAGTGCCTCAGCATCAAACAGCTCCATTAG-TGATGGCGCTGGTGCCTTCTG------------------- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80799118 544 + 112612857 ataaaattgagacagtaaaagtacctatcacatgacattgttgtggagactatatacattaatacatttaacacagagtg--------agcact---ttatacatgtaaCCTGATGTTATTCTTACTCTTACTTGATA------TGTCTTTTATCAACATCATAAACTTTATAAAGAAACATTAGTTTT-TCTAATTCAAACAGCTTTCCAAAAGAGCTTTTGGGGA--------GCTAAGGAGAGTGTAGTTTTCTTTTGCTTATAGTTATGCCATCTACTCTTCATTCCAACCAGAGAAAGAACCTTATTTTTCATATCATTTGGCTCTAGTTTAAGCACTGG--AGCCTCATCTCACTTTTGTGTGGCTGAACA----AGGTGTGGATATAAAGTAATAACACTGAGTTTCACACTTAGTATATAGTCTCTCCCAGCAGATGACACGTTTTT--CTCTATAAATTGTTGGTTGTTGCCAAGAATGCTTTGCTTCCTGCTTCATTATTCTCCCATCCCAGCCT-------------------------GCTAGTGCCTCAGCATCAAACAGCTCCATTAG-TGATGGCGCTGGTGCCTTCTG------------------- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76848224 544 + 107442819 ATAAAATTGAGACAGTAAAAGTACCTATCACATGACATTGTTGTGAAGACTATATACATTAATACATTTAACACAGAGTG--------AGCACT---TTATACATGCAACCTGATGTTATTCTTACTCTTACTTGATA------TGTCTTTTATCAACATCATAAACTTTATAAAGAAacaatagtttt-tctaattcagACAGCTTTCCAAAAGAGCTTTTGGGGG--------GCTAAGGAGagtgtagttttcttttgcttatagTTATGCCATCTACTCTTCATTCCAACCAGAGAAAGAACCTTATTTTTCATATCATTTGGCTCTAGTTTAAGCACTGG--AGCCTCATCTCACTTTTGTGTGGCTGAACA----AGGTGTGGATATAAAGTAATAACACTGAGTTTCACACTTAGTATATAGTCTCTCCCAGCAGATGAcacattttt--ctctataaattgtTGGTTGTTGCCAAGAATGCTTTGCTTCCTGCTTCATTATTCTCCCATCCCAGCCT-------------------------GCTAGTGCCTCAGCATCAAACAGCTCCATTAG-TGATGGCGCTGGTGCCTTCTG------------------- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81111818 544 + 108555830 ataaaattgagatagtaaaagtacctatcacatgacattgttgtgaagactatatacattaatgcatttaacacagagtg--------agcact---ttatacatgtaaCCTGATGTTATTCTTACTCTTACTTGATA------TGTCTTTTATCAACATCATAAACTTTATAAAGAAACATTAGTTTT-TCTAATTCAGACAGCTTTCCAAAAGAGCTTTTGGGGA--------GCTAAGGAGAGTGTAGTTTTATTTTGCTTATAGTTATGCCATCTACTCTTCATTCCAACCAGAGAAAGAACCTTGTTTTTCATATCATTTGGCTCTAGTTTAAGCACTGG--AGCCTCATCTCACTTTTGTGTGGCTGAACA----AGGTGTGGATATAAAGTAATAACGCTGAGTTTCACACTTAGTATATAGTCTCTCCCAGCAGATAACACGTTTTT--CTCTATAAATTGTTGGTTGTTGCCAAGAATGCTTTGCTTCCTGCTTCATTATTCTCCCATCCCAGCCT-------------------------GCTAGTGCCTCAGCATCAAACAGCTCCATTAG-TGATGGCGCTGGTGCCTTCTG------------------- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111331617 571 - 210400635 ataaaatggatgtagtaaaagtacctatcacgtaagattgttgtgaagactatatacattaatacatttaaCACAGAGTGAGGACTTTAGGACT---TTATACATGTAACCTGATG---TTCTTACTATTACTTGATG------TGTCTTTTATCAACATCATAAACTTTATAAATATACATTAGTTTTCTCTAATTCAGACAGCTTTCCAACACAGCTTCTGGGGA--------GCTAA--AGAGTATAATTTTCTTTTGCTTATAGTTATACCATCTACTCTTCATTCCAACCAGAGAAATAACCTGATTTTTCTTATCATTTGGCTCTAGTTTAAGTACTGGCAAGCCTCATCTCACTTTTGTATGGCTGAACG----AGGCATGGATATAAAGTAATAAGACTGAATTTCACACTTAGCATATAGTCTCTCCCAGCAGATGACACTTTTTTTCCTCCATATATTATTAGTTGTTGTCAAGAATGCTTTGCTTCCTGATTTATTATTCTCCCACCCCAGCCT-------------------------GCTAGTACTTCAGCATCAACCAACTCCCCTGG-TGATGGTGCTGGTGTTTTCTGTGAGACCCCCAAGCCTGAC i calJac3.chr1 C 0 C 0 s mm10.chr19 37989390 553 - 61431566 AtaaagtaggagtagtaaaaatacctgccttgtaagatttttgtgaagattaTTCACACTGACGCA-CTAACACATAGGG--------ACAACTGAATGATACACATAACCTAA-----TCCTCAC----ACTAAATACCATATTTTATCTTAGCAAGATTATACACATTATAGATAAACATTCTTTCT-TCTGGCT----TAGCCTTCTGATACAGCTGCTGGGTATGGGGGATGTGAAGGACACTGTAACTGTGTTTTGCTTTTAGCTTTGTCATTTGCTTTTTGTTACAGCCAGAGGG------TTAACTTTCTTATCATTT-CTTCTATGTTAACCTTCAA-GAGCTTCATCTATCATTCGTGTGCCTGGAAGATACATACATGTGTGTAATGAAATGGGGTGATGTCTTACACTTAGCCTGTAGTCTCATTCAGCAGCTCACAGGGTTTT--TTCATTACATCATT------------------TTCTCTCCATCCTTCTTTCTCCCCCAACTCCAGCCTGTTCTCCGTGTATCTGTCTCACAGAGCTGGGGCCTCAGCCTCAACTGCTTCCTGTAACTGGTGGTGCGGATACCTCCTT------------------- i mm10.chr19 I 698 C 0 e canFam3.chr1 35233246 52 - 122678785 I a score=1231494.000000 s hg38.chr9_GL383541v1_alt 26950 342 + 171286 TGATCTCTCA--TCTCCTAAGTTCTTGGACAAGATCCTAACCCTTGGCCTTC---CTGTCAATCAGTCTGGG-TGCTTGAGTTCTCTTGCCTGACCCCTCCACTTGAGATTTAACCCAACTGGGGTGGTAATATCTGCCTGCTAA-----GCCTCTACTGGCTTCTGTGGATGTAAGCTGT--GTCTGGGCAGCCTCCTCCTTATGAAGGCCAACACCCCATCTGGTTTCCTCCCT-----------------------------------ACTCAAATTAGAGTTGCTGAATGGGAAGTGGCTACCCAAATCCTGGCCTGATCCCTAATAAGACACCTAGGGATTTTTAGGATGTTTCCCATACCATAATTGCAGAAGTCAGC--------TA--------ATAT s panTro4.chr9 68592461 342 + 137840987 TGATCTCTCA--TCTCCTAAGTTCTTGGACAAGATCCTAACCCTTGGCCTTC---CTGTCAATCAGTCTGGG-TGCTTGAGTTCTCTTGCCTGACCCCTCCACTTGAGATTTAACCCACCTGGGGTGGTAATATCTGCCTGCTAA-----GCCTCTACTGGCTTCTGTGGATGTAAGCTGT--GTCTGGGCAGCCTCCTCCTTATGAAGGCCAACACCCCATCTGGTTTACTCCCT-----------------------------------ACTCAAATTAGAGTTGCTGAATGGGAAGTGGCTACCCAAATCCTGGCCTGATCCCTAATAAGACAACTGGGGATTTTTAGGATGTTTCCCATCCCATAATTGCAGAAGTCAGC--------TA--------ATAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64745514 342 + 135191526 TGACCTCTCA--TCTCCTAAGTTCTTGGACAAGATCCTAACCCTTGGCCTTC---CTGTCAATCAGTCTGGG-TGCTTGAGTTCTCTTGCCTGACCCCTCCACTTGAGATTTAACCCACCTGGGGTGGTAATATCTGCCTGCTAA-----GCCTCTACTGGCTTCTGTGGATGTAAGCTGT--GTCTGGGCAGCCTCCTCCTTATGAAGGCCAACACCCCATCTGGTTTCCTCCCT-----------------------------------ACTCAAATTAGAGTTGCTGAATGGGAAGTGGCTACCCAAATCCTGGCCTGATCCCTAATAAGACACCTGGGGATTTTTAGGATGTTTCCCTTCCCATAATTGCAGAAGTCAGC--------TA--------ATAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57785655 376 - 122973662 TGATCTCTCA--ACTCCTAAGTTCTTGGACAAGATCCTAACCCTTGGCCTTC---CTGTCAATCAGTCTGGG-TGCTTGAGTTCTCTTGCCTGACCCCTCCACTTGAGATTTAACCCACCAGGGGTGGTAATATCTGCCTGCTAA-----GCCTCTACTGGCTTAC-TGGATATAAGCTGT--GTCTGGGCAGCCTCCTCCTTATGAAGGCCAACACCCCATCTTGTTTCCTCCCTACTCAATTAGGGATTCCTAATTGAGTTTCCTTCCAACTCAAATTAGAGTTGCTGAATGGAAAGTGGCTACCCAAATCCTGGCCTGATCCCTAATAGGACAGCTGGGGATTTTTAGGATGTTTCCCTTCCCATAATTGCAGAAGTCAGC--------TA--------ATAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79718825 346 + 112192347 TGATCTCTC---TCTCCTAGGTTCTTGGACAAGATCCTAACCCTTGGCCTTC---CTGTCAATCAGTCTGGG-TTCTTGAGTTCCCTTGCCTGACCCCTCCACTTGAGATTTAACTCACCTGGGGTGGTAATATCTGCCTGCTAATCCCTGCCTCTACTGGCTTCTGCGGATGTAAGCTGT--GTTTGGGCAGTCTCCTCCTTATGAAGACCAACACCCCATCTGGTTTTCTCCCT-----------------------------------ACTCAAATTAGAGTTGCTGAATGGGAAGTGGCTACCCAAATCCTGGCCTGATCCCTAATAAGACACCTGGGAATTTTTAGGATGTTTCCCTTCCCATAATCGCAGAAGTCAGC--------TA--------ATAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80799662 346 + 112612857 TGATCTCTC---TCTCCTAGGTTCTTGGACAAGATCCTAACCCTTGGCCTTC---CTGTCAATCAGTCTGGG-TTCTTGAGTTCCCTTGCCTGACCCCTCCACTTGAGATTTAACTCACCTGGGGTGGTAATATCTGCCTGCTAATCCCTGCCTCTACTGGCTTCTGCGGATGTAAGCTGT--GTTTGGGCAGTCTCCTCCTTATGAAGACCAACACCCCATCTGGTTTCCTCCCT-----------------------------------ACTCAAATTAGAGTTGCTGAATGGGAAGTGGCTACCCAAATCCTGGCCTGATCCCTAATAAGACACCTGGGAATTTTTAGGATGTTTCCCTTCCCATAATTGCAGAAGTCAGC--------TA--------ATAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76848768 346 + 107442819 TGATCTCTC---TCTCCTAGGTTCTTGAACAAGATCCTAACCCTTGGCCTTC---CTGTCAATCAGTCTGGG-TTCTTGAGTTCCCTTGCCTGACCCCTCCACTTGAGATTTAACTCACCTGGGGTGGTAATATCTGCCTGCTAATCCCTGCCTCTACTGGCTTCTGTGGATGTAAGCTAT--GTTTGGGCAGCCTCCTCCTTATGAAGACCAACACCCCATCTGGTTTCCTCCCT-----------------------------------ACTCAAATTAGAGTTGCTGAATGGGAAGTGGCTACCCAAATCCTGGCCTGATCCCTAATAAGACACCTGGGAATTTTTAGGATGTTTCCCTTCCCATAATTGCAGAAGTCAGC--------TA--------ATat i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81112362 346 + 108555830 TGATCTCTC---TCTCCTAGGTTCTTGGACAAGATCCTAACCCTTGGGCTTC---CTGTCAATCAGTCTGGG-TTCTTGAGTTCCCTTGCCTGACCCCTCCACTTGAGATTTAACTCACCTGGGGTGGTAATATCTGCCTGCTAATCCCTGCCTCTACTGGCTTCTGTGGATGTAAGCTGT--GTTTGGGCAGCCTCCTCCTTATGAAGACCAACACCCCATCTGGTTTTCTCCCT-----------------------------------ACTCAAATTAGAGTTGCTGAATGGGAAGTAGCTACCCAAATCCTGGCCTGATCCCTAATAAGACACCTGGGAATTTTTAGGATGTTTCCCTTCCCATAATTGCAGAAGTCAGC--------TA--------ATAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111332188 354 - 210400635 TGATCTCTCA--TCCCCTAAATTCTTGAGCGAGATCCTAACCCTTGGCCTTG---CTGTCAATCACTCTGAG-TCCTTGAGTTCTCTTACCTGACCCCTCCACTTGAGGTTTAACCCACCT-GGGTGGTAGTATCTGCCTGCTAATCCCTGCTTCAACTGACATCCATAGATAGAAGCTCT--GCCTGGCCAGCCTCTTTCTTATGAAGGTCAGCACCCCATCTGACTTCCTCCCT-----------------------------------ACTCAAATTAGAGTTGCTGAATGGGAAGTGGCTACCCAAATCCTGGTCTGATCCCTGGTAAGACACCTGGAGATTTTTAGGATATTTCCCTTCCCATAATTGCAGAAGTCAGCTAAGGTCATA--------ATAT i calJac3.chr1 C 0 C 0 s mm10.chr19 37989943 297 - 61431566 GAGACTCCCAGCTCTGCT--------------GATGCTCACCCCTTAGCTCCAGGCAGGCCACCAACCTTGGCCTTTTGAGATGTCCTGAT-----------CTTGGGATTTAGCTT--------TGATAGCATCTGCATG---------------GCTGGCTTATG-GGATAGACGCTGTCAGTATGGCCAACCTCTCTCC-----AGGCCAATGTCCTGGCTGAGTTCTTCCCC-------------------------------------TTAGATTAGAA-TGTTGACTAGGGAGCTCTTCTCTGGATCCAAGACCTTTCCCCCAGAA-ATGTCTTGGGATGTTTAGGATATTTTCCTTCTCCTAATTACAGAAGTCAGC--------CA--------AGGT i mm10.chr19 C 0 I 39 s canFam3.chr1 35233298 340 - 122678785 TAATCTCTCT--TACCCTAAGCTCTTGGGCAGAGCCCTATCCCTTGGCCTCC---CTGCCAATCAGTCTGGG-TTCTTGGGTTCTCTTAACTGGCCCCGCCACTTGGGATTTAACCTGCCTGGACTGGTTATATCCAACTGCTCCTCCCTCCCTTGATTGACTTCTTTGGACATAGGCT----GTCTGGCCAACCCCCTTCTTTTCAAGGCCAATACCCCATCTGGGTTTTTCTCT-----------------------------------TCTCAAATTAGAGTTACCCGATGGGAAGTAGCTACCCAGCTCCC-------------ACAAGACACCTAAGGAGTTTTAGGATGCTTCCCTTCTTATAATTGTACAAGTCAGC--------TGTGGTCACCATAT i canFam3.chr1 I 52 C 0 a score=75002.000000 s hg38.chr9_GL383541v1_alt 27292 23 + 171286 GTGGGGAGG-AAAAAAATAATTTT s panTro4.chr9 68592803 23 + 137840987 GTGGGGAGG-AAAAAAATAATTTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64745856 23 + 135191526 GTGGGGAGG-AAAAAAATAATTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57786031 23 - 122973662 GTGGGGAGG-AAAAAAATAATTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79719171 23 + 112192347 GTGGGGAGG-AAAAAAATAATTTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80800008 23 + 112612857 GTGGGGAGG-AAAAAAATAATTTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76849114 24 + 107442819 gtggggaggaaaaaaaataatttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81112708 23 + 108555830 GTGGGGAGG-AAAAAAATAATTTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111332542 24 - 210400635 ATGAGGAGGAAAAAAAATTTTTTT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35233638 22 - 122678785 GTTGGCAG--AAAAAAATAATTCT i canFam3.chr1 C 0 C 0 e mm10.chr19 37990240 39 - 61431566 I a score=400050.000000 s hg38.chr9_GL383541v1_alt 27315 107 + 171286 TGTCAGAGGACTTTATGCTTTTGTTGCCATCTTCAAATCTTTTAGCCTATAGTTACCATGTTTTGGTAACTTGT--------ATCTTGGGGTGTAATATTCATTTAAATATTTTG s panTro4.chr9 68592826 107 + 137840987 TGTCAGAGGACTTTATGCTTTTGTTGCCATCTTCAAATCTTTTAGCCTATAGTTACCATGTTTTGGTAACTTGT--------ATCTTGGGGTGTAATATTCATTTAAAAATTTTG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64745879 107 + 135191526 TGTCAGAGGACTTTATGCTTTTGTTGCCATCTTCAAATCTTTTAGCCTATAGTTACCATGTTTTGGTAACTTGT--------ATCTTGGGGTGTAATACTCATTTAAAATTTTTG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57786054 106 - 122973662 TTTCAGAGGACTTTATGCTTTTGTTGCCATCTTCAAATCTTTTAGCCTATAGTTACCATGTTTTGGTAACTTGT--------ATCTTGGGGTGTAATATTCATTTAAAAA-TTTG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79719194 107 + 112192347 TGTCAGAGGACTTTATGCTTTTGTTGCCATCTTCAAATCTTTTAGCCTATAATTACCATGTTTTGGTAACTTGT--------ATCTTGGAGTGTAATATTCATTTAAAAATTTTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80800031 107 + 112612857 TGTCAGAGGACTTTATGCTTTTGTTGCCATCTTCAAATCTTTTAGCCTATAATTACCATGTTTTGGTAACTTGT--------ATCTTGGAGTGTAATATTCATTTAAAAATTTTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76849138 107 + 107442819 tgtcagaGGACTTTATGCTTTTGTTGCCATCTTCAAATCTTTTAGCCTATAATTACCACGTTTTGGTAACTTGT--------ATCTTGGAGtgtaataatcatttaaaaattttg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81112731 107 + 108555830 CATCAGAGGACTTTATGCTTTTGTTGCCCTCTTCAAATCTTTTAGCCTATAATTACCATGTTTTGGTAACTTGT--------ATCTTGGAGTGTAATATTCATTTAAAAATTTTG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111332566 107 - 210400635 TGTCACAAGACTTTATGCTTTTGTTGCCATCTTCAAATCTTTTAGCCTACAGTTACCATGTTTTAGTAACTTGT--------ATCTTAGGGCATAATATTCATTTAAAAATTCTG i calJac3.chr1 C 0 C 0 s mm10.chr19 37990279 114 - 61431566 TGTCATGGGACTTTATGCCTGGTTTGCCATCCTCAACTTTATTAACCTACAGTGACTGTGTTTTGTCACTGTGCGTTACAAAATTTAACGATACAATATTTA-ACAAAAGTTCTG i mm10.chr19 I 39 I 421 s canFam3.chr1 35233660 100 - 122678785 -----TAGGACTTTCTGCTTTCATTGCCACCTTCAAATCCCCTGGCATACGGTTAGCATGTTTTG-TGACTTGC--------ATCTTGCTGTATAATATTTATAAAATACTCTT- i canFam3.chr1 C 0 C 0 a score=821243.000000 s hg38.chr9_GL383541v1_alt 27422 232 + 171286 GTTCTTAAAATAACAGAACCTC-TTTGGTAGATCAC--CCCAGCATCAGTCT-TACTTCTATATCTTTT--CAAAC--TA-----TTAGGTTTTGAAGAAGTTGAGTGAAATCCATTTATGTTAGTAGAGGTGATGGGTATCCCAATAAGTAGAGCTAGCAGGTAGTTAAACTTGTCTTGGGTATCCTTGTTGGTCAACCCTGATTTTTGTGTCTAACAACTATCCCAGCACTCTCCTTCAATTT s panTro4.chr9 68592933 234 + 137840987 GTTCTTAAAATAACAGAATCTC-TTTGGTAGATCAC--CCCAGCATCAGTCT-TACTTCTATGTCTTAT--CAAACAATA-----TTAGGTTTTGAAGAAGTTGAGTGAAATCCATTTATGTTAGTAGAGGTGATGGGTATCCCAATAAGTGGAGCTAGCAGGTAGTTAAACTTGTCTTGAGTATCCTTGTTGGTCAACCCTGATTTTCATGTCTAACAACTATCCCAGCACTCTCCTTCAATTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64745986 230 + 135191526 GTTCTTAAAATAACAGAACCTC-TTTTGTAGATCAC--TCCAGCATCAGT-----CTTCTATCTCTTAT--CAAACAATA-----TTAGGTTTTGAACAAGTTGAGTGAAATCCATTTATGTTAGTAGAGGTGATGGGTATCCCAATAAGTAGAGCTAGCAGGTAGTTAAACTTGTCTTGGGTATATTTGTTGGTCAACCCTGATTTTCATGTCTAACAACTATCCCAGCACTCTCCTTCAATTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57786160 229 - 122973662 GTTCTTAAAATAAC-----CTC-TTTGGTAGATCAC--CCCAGCATCAGTCT-TACTTCTATCTCTTAT--CAAACAATA-----TTAGGTTTTGAAGAAGTTGAGTGAAATCCATTTATGTTAGTAGAGGTGATGGGTATCCCAATAAGTAGAGCTAACAAGTAGTTAAACTTGTCTTGGGCATCCTTGTTGGTCAACCCTGATTTTCATGTCTAACAACTATCCAAGCACTCTCCTTCAATTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79719301 234 + 112192347 GTTCTTAAAATAACAGAACCTC-TTTGGTAGATCAC--CCCAGCATCAGTCT-TACTTCTGTCTCTTAT--CAAACAATA-----TTAGGTTTTGAAGAAGTTGAGTGAAATCCATTTATGTTAGTAGAGGTGATGGGTATCCCAATAAGTGGAGCTAGAAGGTAGTTAAACTTGTCTTGGACGTCCTTGTTGGTCAACCCTGATTTTCATGTCTAACAACTATCCCAGCACTCTCCTTCAATTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80800138 234 + 112612857 GTTCTTAAAATAACAGAACCTC-TTTGGTAGATCAC--CCCAGCATCAGTCT-TACTTCTGTCTCTTAT--CAAACAATA-----TTAGGTTTTGAAGAAGTTGAGTGAAATCCATTTATGTTAGTAGAGGTGATGGGTATCCCAATAAGTGGAGCTAGAAGGTAGTTAAACTTGTCTTGGACGTCCTTGTTGGTCAACCCTGATTTTCATGTCTAACAACTATCCCAGCACTCTCCTTCAATTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76849245 234 + 107442819 gttcTTAAAATAACAGAACCTC-TTTGGTAGATCAC--CCCAGCATCAGTCT-TACTTCTGTCTCTTAT--CAAACAATA-----TTAGGTTTTGAAGAAGTTGAGTGAAATCCATTTATGTTAGTAGAGGTGATGGGTATCCCAATAAGTGGAGCTAGAAGGTAGTTAAACTTGTCTTGGACGTCCTTGTTGGTCAACCCTGATTTTCATGTCTAACAACTATCCCAGCACTCTCCTTCaattt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81112838 234 + 108555830 GTTCTTAAAATAACAGAACCTC-TTTGGTAGATCAC--CCCAGCATCAGTCT-TACTTCTGTCTCTTAT--CAAACAATA-----TTAGGTTTTGAAGAAGTTGAGTTAAATCCATTTATGTTAGTAGAGGTGATGGGTATCCCAATAAGTGGAGCTAGAAGGTAGTTAAACTTGTCTTGGACGTCCTTGTTGGTCAACCCTGATTTTCATGTCTAACTACTATCCCAGCACTCTCCTTCAATTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111332673 233 - 210400635 GCACTTAAAATAACAGAACCTCTTTTGGTAGATCAC--CCCAGCATCAGTAT-CACTTCTGTCTCTTAT--CAAACAATA-----TTAGGTTTTGAAGAAGTTGAGTGAAATCAGTT--TGTTAGTAGAGGTGATGGATGTCTCAAGAAGTAGATCCAACAGGTAGTTGAACTTGTATTAGGCATCCTTGTTGGTCAATCCTGATTTTCACGTCTAACCACTATCCCAGCGGTCTCTTTCAATTT i calJac3.chr1 C 0 I 2713 s mm10.chr19 37990814 229 - 61431566 ATTCTTAAAATATCAGTATTTCTTTTACTAGGTTACCACCCAAGGTCTGCTTCTATTTCTACCTTGTGTAGCAAAC----------TTGATGATCAAGAGTTTGAGTGAGATTCAGCTATGCTAATAGAGGTT-TGGGCATTTCAATAAGTAGAAACAGCTGGTAA-TGAATCCGTCTTG---ATTCAAGATGAATGACCCTGATTTTCACACCTGTCAACT-TTCAAATACTCTTCCTTAATTT i mm10.chr19 I 421 I 3 s canFam3.chr1 35233760 212 - 122678785 GTTCTTAAAGTAGCAGAAACTC-CTTGCTAGGTCAC--CCCAGCAGTAGACC-TACTTCTATCTCttat--taaataatatttttttttatttttatgaatttaaatGAAACTCCATTATGTCGATATAAGTGAT----ACCTTGATAAATAAGGCCACTAGGGAGTTATATATGTCTTG-GCATCTTGGTTGGTCAACCCTGATTTTCACATCT----------------------TCCAATTT i canFam3.chr1 C 0 C 0 a score=290561.000000 s hg38.chr9_GL383541v1_alt 27654 89 + 171286 TTCTTATGCTTTTC-----TTAACCAACTAAATCATATAAATGTAGTTATGCATTCAGGTCTA---------------------GGTTCTTGGAGTGTTTGATTACATATCCATC s panTro4.chr9 68593167 89 + 137840987 TTCTTATGCTTTTC-----TTAACCAACTAAATCATATAAATGTAGTTATGCATTCAGGTCTA---------------------GGTTCTTGGTGTGTTTGATTACATATCCATC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64746216 89 + 135191526 TTCTTATGCTTTTC-----TTAACCAACTAAATCACATAAATGTAGTTATGCATTCAGGTCTA---------------------GGTTCTTGTGGTGTTTGATTACATATCCATC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57786389 89 - 122973662 TTCTTATGCTTTTC-----TTAACCAACTAAATCATATAAATGTAGTTATGCATTCAGGTCTA---------------------GGTTCTTGGAGTGTTTGATTACAtatccatc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79719535 89 + 112192347 TTCTTATGTTTTTC-----TTAACTAACTAAATCATATAAATGTAGTTATGCATTCAGGTCTA---------------------GGTTCTTGGAGTGTTTGATTACATATCCATC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80800372 89 + 112612857 TTCTTATGTTTTTC-----TTAACTAACTAAATCATATAAATGTAGTTATGCATTCAGGTCTA---------------------GGTTCTTGGAGTGTTTGATTACATATCCATC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76849479 89 + 107442819 ttcttatgcttttc-----tTAACTAACTAAATCATATAAATGTAGTTATGCATTCATGTCTA---------------------GGTTCTTGGAGTGTTTGATTACATATCCAtc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81113072 89 + 108555830 TTCTTATGCTTTTC-----TTAAATAACCAAATCATATAAATGTAGTTATGCATTCATGTCTA---------------------GGTTCTTGGAGTGTTTGATTACATATCCATC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111335619 89 - 210400635 TTCTTATGCTTTTC-----TTAATCAACTAAATCATATAAATGTAGTTACGCATTCAGGTCTA---------------------GGTTCTTGGCGTGCTTGATtatgtatccatc i calJac3.chr1 I 2713 C 0 s mm10.chr19 37991046 90 - 61431566 TTCATATGCTTTCCCAAAATAAATCAAGTATATCACAAAAGTGTATTT----ATTCCAGTCAG---------------------GAGACTTGGTGTGTTTGGCTGTCTGTCTATC i mm10.chr19 I 3 I 123 s canFam3.chr1 35233972 103 - 122678785 ----tatatatatg-----tatacatatcaaatgtcaaatatatatctatata-tcatatctgtatatatatCTTTTTTCAGATAGATCTGTATATATTATATCATATATATG-- i canFam3.chr1 C 0 C 0 a score=-7689.000000 s hg38.chr9_GL383541v1_alt 27743 89 + 171286 TATT-----TATATCTATTTACCTATCtagatagata---------gagatagataga-----------tagatagatagatagat-----agatagatagacagac---------------------------------aga-----------------------------tagatagat s panTro4.chr9 68593256 77 + 137840987 TATT-----TATATCTATTTACCTATCtagatagata--------------------------------tagatagatagatagat-----agatagatagatagac---------------------------------aga-----------------------------tagatagat i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64746305 102 + 135191526 TATTTAATCTATATCTATCTACCTATCtagatagatagat-agatagatatagataga-----------tacatagatagatagat-----agatagatagatagat---------------------------------aga-----------------------------tagatagat i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57786478 90 - 122973662 tatttaatctatatctatttacctatctagatagata-------------tagataga-----------tagataggtagataggt-----agatagatagatagat---------------------------------aga-----------------------------cagatagat i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79719624 36 + 112192347 TATTT----AATGTATATTTACCTATCTAGATAGATA---------------------------------------------------------------------------------------------------------------------------------------------GAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80800461 36 + 112612857 TATTT----AATGTATATTTACCTATCTAGATAGATA---------------------------------------------------------------------------------------------------------------------------------------------GAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76849568 36 + 107442819 tattt----aatgtatatttacctatctagatagata---------------------------------------------------------------------------------------------------------------------------------------------gat i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81113161 36 + 108555830 TATTT----AATGTATATTTACCTATCTAGATAGATA---------------------------------------------------------------------------------------------------------------------------------------------GAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111335708 63 - 210400635 tacct----agtctctatctatcta--tagatctgta----------------------------------------------gat-----ctatctgtAGATAACCT--------------------------------AGA-----------------------------TAGGTAGAT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35234075 173 - 122678785 -----AACATATCAATAATTACCAAT---GATATATATATGAAATACCTATAGGAAGAAGATAGTGCTTAACACAGATGAACATATTACTGTGATAAATGAAGAAGTTATTTAAAAGCAAGGAACTTTGCATAATATATCAGAAATTTCTGGTGTACCCATCGGGCTGTACCTAGTTAAAC i canFam3.chr1 C 0 C 0 e mm10.chr19 37991136 123 - 61431566 I a score=1574588.000000 s hg38.chr9_GL383541v1_alt 27832 487 + 171286 --aTAGTTTCACCTACA-----------------------------------------------------------------Gaatggttctcagccctggctggaaattaaaa--caggt-aaaaaaaaattttttt-----aa---a---gctatatccaggtcttactccaagaggttctgatttatttgtccagaaatgggaccagacttggcatcattaaa---------------aaaca-a---------cacacactaacagactccctaggtgattgtgatatgtgtccatggttgaggaATGTGTATTGGAATGGCTTTCAACTCCCCAGCTTCTCCAGATGTAAGAAAGAAGAAATGCCCTCGTCTTAAGTATCTTTTGA-------------TGATTAGC-AATTACCCACAGGC-----TAATGTGC--AAAATG--------------------------------------------------CCTTGT--TTGGCATTCAAGGCCCTTCACAGTT---TGCTCCAAATTACATTTCTCCTCT-TCCTTC--CCATTAATCTCTAATG-TGCTGTTCATTCAACATGCCCT--TTACTTA---------------------------------CTTGCTTCTTGTTTT------------------------ATTTGCAAAGTTCT--------------------------------------CTTTACCTGT--------------------------ATAATGCTGCTTTTCTATTCT s panTro4.chr9 68593333 486 + 137840987 --aTAGTTTCACCAACA-----------------------------------------------------------------caatggttctcagccctggctggaaattaaaa--caggt-aaaaaaaaattttttttt---aa---a---gctatatccaggtcttactccaagaggttctgatttatttgtccagaaatgggaccagacttggaatcattaaa------------------ca-a---------cacacactaacagactccctaggtgattgtgatatgtgtccatggttgaggaATGTGTATTGGAATGGCTTTCAACTCCCCAGCTTCTCCAGATGTAAGAAAGAAGAAATGCCCTCGTCTTAAGTATCTTTTGA-------------TGATTAGC-AATTACCCACAGGC-----TAATGTGC--AAAATG--------------------------------------------------CCTTGT--TTGGCATTCAAGGCCCTTCACAGTT---TGCTCCAAATTACATTTCTCCTCT-TCCTTC--CCATTAATCTCTAATG-TGCTGTTCATTCAACATGCCCT--TTACTTA---------------------------------CTTGCTTCTTGTTCT------------------------ATTTGCAAAGTTCT--------------------------------------CTTTACCTGT--------------------------ATAATGCTGCTTTTCTATTCT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64746407 487 + 135191526 --aTAGTTTCACCTATG-----------------------------------------------------------------caatggttctcagccctggctggaaattaaaa--caggt-aaaacaaatttttttt-----aa---a---gctatatccaggtcttactccaagagattctgatttatttgtccagaaatgggaccagacttggcatcgttaaa---------------aaaca-a---------cacacactaaaagactctctaggtgattgtgatatgtgtccatggttgaggaATGTGTATTGGAATGGCTTTCAACTCCCTAGCTTCTCCAGATGTAAGAAAGAAGAAATGCCCTCGTCTTAAGTATCTTTTGA-------------TGATTAGC-AATTACCCATAGGC-----TAATGTGC--AAAATG--------------------------------------------------CCTTGT--TTGGCATTCAAGGCTCTTCACAGTT---TGCTCCAAATTATATTTCTCCTCT-TCCTTC--CCATTAATCTCTAATG-TGCTGTTCATTCAACATGCCCT--TTACTTA---------------------------------CTTGCTTCTTGTTCT------------------------ATTTGCAAAGTTCT--------------------------------------CTTTACCTGT--------------------------ATAATGCTGCTTTTCTATTCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57786568 482 - 122973662 --aTAGTTTCACCTATG-----------------------------------------------------------------caatggttctcagccctggctggaaattaaaa--caggt-aaaaaaaaaatttt-------ta---a---actatatccaggtcttactccaaaagattctgatttatttgtccagaaatgggaccagacttggcatcattaaa---------------aaaca-a---------cacacactaacagactccctacgtgattctgatatgtgtccatgg-tgaggaaTGTGTATTGGAATGGCTTTCAACTCCCCAGTTTCTCCAGATGTAAGATAGAAGACATGCCCTCGTCTTAAGTATCTTTGGA-------------TGATTAGC-AATTACCCACAGGC-----TAATGTGC--AAAATG--------------------------------------------------TCTTGT--TTGGCATTCAAGGCCCTT--CAGTT---TGCTCCAAATTATATTTCTCTTCT-TCCTTC--CCATTAATCTCTAATG-TGCTGTTCATTCAACATGCCCT--TTACTTA---------------------------------CTTGCTTCTTGTTCT------------------------ATTTGCAAAGTTCT--------------------------------------CTTTACCTGT--------------------------ATAATGCTGCTTTTCTATTCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79719660 486 + 112192347 --ATAGTTTCACCTATG-----------------------------------------------------------------caatgattctcagccctggctggaaattaaaa--caggt-aaaaaaaaaatatttt-----aa---a---gctatatccaggtcttactccaagagattctgatttatttgtccataaatgggaccagacttggcattgttaaa----------------aaca-a---------cacacactgacagactccccaggtgattctgatgtgtgtacatggttgagaaATGTGTATTGGAATGGCTTTCAACTCCCCAGCTTCTCCAGATGTAAGAAAGAAGAAATGCTCTCATCTTAAGAATCTTTTGA-------------TGATTAGC-AATTACCCACAGGC-----TAATGTGC--AAAATG--------------------------------------------------CCTTGT--TTGGCATTCAGGGCCCTTCACAGTT---TGCTCCAAATTATGTTTCTCCTCT-TCCCTC--CCATTAATCTCTAATG-TGCTGTTCATTCAACACGCCCT--TTACTCA---------------------------------CTTGCTTCTTGTTCT------------------------ATTTGCAAAGTTCT--------------------------------------CTTTAACTGT--------------------------ATAATGCTGCTTTTCTATTCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80800497 487 + 112612857 --ATAGTTTCACCTATA-----------------------------------------------------------------caatggttctcagccctggctggaaattaaaa--caggtaaaaaaaaaaatatttt-----aa---a---gctatatccaggtcttactccaagagattctgatttctttgtccataaatgggaccagacttggcattgttaaa----------------aaca-a---------cacacactgacagactccccaggtgattctgatgtgtgtacatggttgagaaATGTGTATTGGAATGGCTTTCAACTCCCCAGCTTCTCCAGATGTAAGAAAGAAGAAATGCTCTCATCTTAAGAATCTTTTGA-------------TGATTAGC-AATTACCCACAGGC-----TAATGTGC--AAAATG--------------------------------------------------CCTTGT--TTGGCATTCAGGGCCCTTCACAGTT---TGCTCCAAATTATGTTTCTCCTCT-TCCCTC--CCATTAATCTCTAATG-TGCTGTTCATTCAACACGCCCT--TTACTCA---------------------------------CTTGCTTCTTGTTCT------------------------ATTTGCAAAGTTCT--------------------------------------CTTTAACTGT--------------------------ATAATGCTGCTTTTCTATTCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76849604 485 + 107442819 --atagttTCACCTATG-----------------------------------------------------------------CAAtggttctcagccctggctggaaattaaaa--caggt--aaaaaaaaatatttt-----aa---a---gctatatCCAGGTCTTACTCCAAGAGATTCTGATTTCTTTGTCCATAAATGGGACCAGACTTGGTATTgttaaa----------------aaca-a---------cacacactgacagactccccaagtgattctgatgtgtgTACATGGTTGAGAAATGTGTATTGGAATGGCTTTCAACTCCCCAGCTTCTCCAGatgtaagaaagaagaaatgccCTCATCTTAAGAATCTTTTGA-------------TGATTAGC-AATTGCCCACAGGC-----TAATGTGC--AAAATG--------------------------------------------------CCTTGT--TTGGCCTTCAGGGCCCTTCACAGTT---TGCTCCAAATTatgtttctcctct-tccctc--ccattAATCTCTAATG-TGCTGTTCATTCAACATGCCCT--TTACTCA---------------------------------CTTGCTGCTTGTTCT------------------------ATTTGCGAAGTTCT--------------------------------------CTTTACCTGT--------------------------ATAATGCTGCTTttctattct i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81113197 481 + 108555830 --ATAGTTTCACCTATG-----------------------------------------------------------------caatggttctcagccctggctggaaattaaaa--gaggt---aaaaaaaatatttt-----aa---a---gctatatccaggtcttactccaagagattctgatttctttgtccataaatgggaccagacttggcattgttaaa----------------atca-a---------cacacactgacagactccccaggtgattctgatgtgtgtacatggttgagaaATGTGTATTGGAATGG--TTCAACTCCCCAGCTTCTCCAGATGTAAGAAAGAAGAAATGCCCTCATCTTAAGAATCTTTTGA-------------TGATTAGC-AATTGCCTACAGGC-----TAATGTGC--AAAATG--------------------------------------------------CCTTGT--TTGGCATTCAGGGCCCTTCACAGTT---TG-GCAAAATTATGTTTCTCCTCT-TCCCTC--CCATTAATCTCTAATG-TGCTGTTCATTCAACACGCCCT--TTACTCA---------------------------------CTTGCTTCTTGTTCT------------------------ATTTGCAAAGTTCT--------------------------------------CTTTACCTGT--------------------------ATAATGCTGCTTTTCTATTCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111335771 491 - 210400635 --ATACTTTCACCTATG-----------------------------------------------------------------cagtggttctcagccctggctagacattaaaaatcaggt----aaaaagttttttttcaaaaa---a---gttatatccagttcctactctaagagattctgacttatttgtccagaagtgggaccagacttggcatcattaaa---------------acacaca---------gacacactaacagactccctaggtgattctgatatgtgtccatgattgaggaATGTGTATTGGAATTGCTTTCAACTCCCCGGCTCCTCCAAATGTAAGAAAGAAGAAATGCCCTCGTCTTGAGAATCTTTTGA-------------TGATTAGC-AATTACCCACAGGC-----TAAAGTGC--AAAATG--------------------------------------------------CCTTGT--TTGGCATTCAAGGCCCTTCACAGTT---TGCCCCAAATTATATTTCTCATCT-TCCCTC--CCATTAATCTCTAATG-TGCTGTTC-TTCAACATGCCCT--TTACTTA---------------------------------CTTGCTTCTTGTTCT------------------------ATTTGTAAAGTTAC--------------------------------------CTTTACCTGT--------------------------ATAATACTGCTTTTCTATTCT i calJac3.chr1 C 0 C 0 s mm10.chr19 37991259 685 - 61431566 --ACTGGTTCACCTAGA-----------------------------------------------------------------CATTCACTCTCAACGCTGGTTGGA----------CAGCC-CCTGAACATTTCCTTT-----CAAGTA---GTCACATCTGGATCCTACTCTCGAGGAGTCTGATTTATTTGGCCAGAAACAAGACCAGGCTTCACATGGTTCAATAAGCTGCCTGGCTGGATCACA---------GACAGAGTGACAGAATC--------------GTGTGCATCTGTGGTTTAGAATGGAACATGAGAATGACTGCCATC-CCACAGTCCCTGCAGGTACCGTAAACAGGAGACCCCATCTCTTTAGAAAACCATTGACAGCTCCCTAAGCTGCCTAGCTCGGCACTCACAGTCCCTCATGATCTGCTTCAAATGATAGTTCTATCCTTTCCTTCCTACTGATCCCTAATATACTGTTAACCCATCCTTATTCTCTTTGTCTATGTCTCTCTCCTATTCTCTGCACCTAACTTTCTCTCCTCTTT-TCCTACGTCCGCCTACCTTAAATGCTGCTGTAGCTTGATGATGGCTTAATTACTTAATTATGCCAACTGaagggtctatgtgttaaaggcttggcccctagtatatagaactgggggagtgctacagaatatgggaagttcttagatgctggggacatgtcctaggaaaggactctaggaccctacctgtcctttctcttactGTGTCAGTTTCAGATATGACTGTTTTGCTACTGT i mm10.chr19 I 123 I 178 s canFam3.chr1 35234248 554 - 122678785 ATAATGCCTTACCTATGTGGGCAAAGCATTCCCAACAAAAACTAAGAATTTATAGAGAAATTCTCATACCTATGTATTAGGCTagtggttctcaaccctggctggatgttaaaat-cacct----aaaaatctctttt-----ga---aattgtcatgtcaaagtc-taccccaagagattctgatttatttggccaaaaatagggccagagttggcattgttaaT---------------AAATA-AATGAATGCTAACAAATGAACaaactccctaggtgaatgtcatatgtggccagggttgaggacAATGTATTGGAATTACTGCCAACTGCTCACCCCTTCCAGATGTAAGAAAGAAGAAAGACCCTCTTGTTAAGAATCCTTTGA-------------TTATGAGT----TGCC--CAGGA-----GAAAGTAC--AGACTG--------------------------------------------------CCCAGT--GTGGCACTCAAAGCCCCTCATGATT---TGCTCCAAATTATAAATCTGCTCTAACCCTC--CTGTCGCTCCCCAATG-TGCTGTTCA-TCAACGTGCCTT--TTACTTT---------------------------------CTTGCCTTTTGCTCT------------------------ATTTGCACTGTTCT--------------------------------------GCACATCTGT--------------------------ATTCTGC----TTTTTATTCC i canFam3.chr1 C 0 C 0 a score=107205.000000 s hg38.chr9_GL383541v1_alt 28319 33 + 171286 CCTGTCCCATGCTCATCTATTTAGGTTCCACCT s panTro4.chr9 68593819 33 + 137840987 CCTGTCCCATGCTCATCTATTTAGGTCCCACCT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64746894 33 + 135191526 CCTGTCCCATGCTCATCTGTTTAGGTCCCACCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57787050 33 - 122973662 CCTGTCCCATGCTCATCTATTTAGGTCCCACTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79720146 33 + 112192347 CCCATCTCATGCTCATCTATTTAGGTCCCACCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80800984 33 + 112612857 CCCATCTCATGCTCATCTATTTAGGTCCCACCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76850089 33 + 107442819 cctgtctcatgcTCATCTATTTAGGTCCCACCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81113678 33 + 108555830 CCCGTCTCATGCTCATCTATTTAGGTCCCACTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111336262 33 - 210400635 CCTGTCCCCTCCTCACCTATTTAAGTCCCACCT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35234802 33 - 122678785 TTTGCTCCATTCTGGCCTATTGAAATCCTACCC i canFam3.chr1 C 0 I 21 e mm10.chr19 37991944 178 - 61431566 I a score=316026.000000 s hg38.chr9_GL383541v1_alt 28352 87 + 171286 ATGCTTTAAGGTCCAGCTTTTTCTTAAAACATTCCATAACTTTTC----CAGATGAA----AACCCTCC--------CTTCCCATGGCT--CTCTGCACTTTCCA s panTro4.chr9 68593852 87 + 137840987 ATGCTTTAAGGTCCAGCTTTTTCTTAGAACATTCCATAACTTTTC----CAGATGAA----AACCCTCC--------CTTCCCATGGCT--CTCTGCACTTTCCA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64746927 87 + 135191526 ATGCTTTAAGGTCCATCTTTTTCTTAAAACATTCCATAACTTTTC----CAGATGAA----AACCCTCC--------CTTCCCATGGCT--CTCTGCACTTTCCA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57787083 87 - 122973662 ATGCTTTAAGGTCCAGCTTTTTCTTAAAACATTCCACAACTTTTC----CAGATGAA----AACCCTCC--------CTTCCCATGGCT--CTCTGCACTTTCCA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79720179 87 + 112192347 ATGCTTTAAGGTCCAGCTGTTTCTTAAAACATGCCATAACTTTTC----CGGATGGA----AACCCTCC--------CTTCCCATGGCT--CTCTTCACTTTCCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80801017 87 + 112612857 ATGCTTTAAGGTCCAGCTGTTTCTTAAAACATGCCATAACTTTTC----CGGATGGA----AACCCTCC--------CTTCCCATGGCT--CTCTTCACTTTCCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76850122 87 + 107442819 ATGCTTTAAGGTCCAGCTGTTTCTTAAAACATGCCATAACTTTTC----CGGATGGA----AACCCTCC--------CTTCCCATGGCT--CTCTTCACTTTCCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81113711 87 + 108555830 ATGCTTTAAGGTCCAGCTGTTTCTTAAAACATGCCATAACTTTTC----TGGATGAA----AACCCTCC--------CTTCCCATGGCT--CTCTTCACTTTCCA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111336295 87 - 210400635 ATGCTTTAAAGTCCAGCTGTTTCTTAAAACATTCCATGACTTTTC----CAAGTAAA----AACCCTCC--------CTTCCCGTGGCT--CTCTTTACTTTCCA i calJac3.chr1 C 0 I 297 s mm10.chr19 37992122 92 - 61431566 ATGCTTTAGATCCCAGTTA-CTCATAAAACATTCCACAAGCCTCC----CAGACGAATGGGACATTTCC--------CTTCCCTCTGTTTACACAGAGCTCTCCA i mm10.chr19 I 178 C 0 s canFam3.chr1 35234856 99 - 122678785 ACGCCAGGGGTTCCAGCTCTTTCTTGAAGCATTCCCTGAGTTTCCTTGGTAGATGAA----CATCTCCCTCCCCTTGCTTCCCTTGGCC--CTCTTCACTTTCTA i canFam3.chr1 I 21 C 0 a score=5855631.000000 s hg38.chr9_GL383541v1_alt 28439 1617 + 171286 CTGTGTAAGTC-------TTCTTATTGGCATCTCCTGATAAGAGTCCCCACCCTGTCAC---CTCA-----TCAGACTGTTATGTCTCTGAGAACAGGAATCACATCCTC-----------------CTTACAATGCCTG----AT----AATATGTGGCATCAACAAACACTTTGAATTTAACCAATCTGTAAAGCCATTGTTGAGATTGATGGAAAAAAAA------TAAAAAATCCTTAACATTTTTTTCCTGTAGTAAAAGA------GGTTGTGTTTAGTAATCCTTCCTACCATGGGACTTCAAAGAG-TTTGAAGGCTTATGCTGTAATTTCCAAATATAACAGCAAAGCAGTATTACAGCTTGTCTCACCAGTACATGGCCTGTTTCATCCCTAATTTGCCAATGGACAAAAAGCTCTTGGATTATTTACCCATCAGGGATGCCTAAGTCCCTTGACTCTCTGCCATCACAAACAACCACAATGCAACCTTGAGAGT-GGCACTGCTGGGGCTGGAAAGTATTTTTTGGCAAGGGATGACCAGACTTTGAACTAGCTATGGAGAGC-GGGTGTTTCTGAGGTACTCAGGTGTGAGATGTCCATAGCACCCACCTTGATGGTTAAAAGCACATAAGGATATTTGTCTGCTCTGGGAAGAAGTTCTTATATATGGTTATGACAAATGGAGAAAGCAGAGGATCAGGTTTGCAAGTC----AGATCTTCCAGGATATTTGCTTTCTCTACTTTGTGAGAAATTTGCATGTGTTTTATGGGATTCTGAGGCTAAGAATAAGATAATAAAA-----CAAGTGGTATCATTACCATAATTTCATTGCATCATGAATAAATAATATGTTTTACAGAAAACCCTACTGCAGACTattcatactgtgaacaagcatctaagtgtctactatccatcatgttctatgttagtagttggaggacatagtacat-gagtacacactccatagggttcacagtcatggtccctgcccttggtggcggccctaggccaata-g-aggacacaaaAACCC-AC-AATT-GTGGTAGA-AGGTAAAAGGAATTGTGTGCTAGTCAAGGCTTTTCATT-------------------TGATC----AAGCAGTGAAGGAGG-----TATTGGAAGGTTGTCAGTTAGCTCTCAGAATCAACAGGAAGTATAGAGAGCAATATTTGGGCAAGAGTAATACAGAGATGCAAGGTGTAGGCAAGATACTTCTGGAA-GAGGCATTTGTGTGACTTTATCA--------CTGGACATTTGTTACTTC--------------ACTGCTG-GACCTGCCTGTtcattcaggagctgtgaggagg----ctcaatttgagggagatagaattgccaatggggaggctaattaggaggctacccatgtatctaaggaag-agattatgagggcctgaattagggcaggggtgttaggtgtgaaaggcaagcagtaaataaagcaacttaaaggggattaagttggtagggcttgagtac------tgat-tgataggagtaatgagtcagaggaagagtgactctgaaatttctagtttgggcagctgtttggttgatggtgccaacagttgggagagttccaagaggaacttcatgcttagggtagaaaaagatatgatcagttctgagctgcctgggacacatccaagtggagacttcgagcagggcattgatgtaagaatctaaag s panTro4.chr9 68593939 1619 + 137840987 CTGTGTAAGTC-------TTCTTATTGGCATCTCCTGATAAGAGTCCCCACCCTGTCAC---CTCA-----TCAGAATGTTATGTCTCTGAGAACAGGAATCACATCCTC-----------------CTTACAATGCCTG----AT----AATATGTGGCATCAACAAACACTTTGAATTTAACCAATCTCTAAAGCCATTGTTGAGATTGATGGAAAAAAAA-----ATAAAAAATCCTTAACATTTTTTTCCTGTAGTAAAAGA------GGTTGTGTTTAGTAATCCTTCCTACCATGGGACTTCAAAGAG-TTTGAAGGCTTATGCTGTAATTTCCAAATATAATGGCAAAGCAGTATTACAGCTTGTCTCACCAGTACATGGCCTGTTTCATCCCTAACTTGCCAATGGACAAAAAGCTCTTGGATTATTTACCCATCAGGGATGCCTAAGTCCCTTGACTCTCTGCCATCACAAACAACCACAATGCAACCTTGAGAGTTGGCACTGCTGGGGCTGGAAAGTATTTTTTGGCAACAGATGACCAGACTTTGAACTAGCTATGGAGAGT-GGGTGTTTCTGAGGTACTCAGGTGTGAGATGTCCATAGCACCTACCTTGATGGTTAAAAGCACATAAGGATATTTGTCTGCTCTGGGAAGAAGTTCTTATATATGGTTATGACAAATGGAGAAAGCAGAGGATCAGGTTTGCAAGTC----AGATCTTCCAGGATATTTGCTTTCTCTACTTTGTGAGAAATTTGCATGTGTTTTATGGGATTCTGAGGCTAAGAATAAGATAATAAAA-----CAAGTGGTATCATTACCATAATTTCATTGCATCATGAATAAATAATATGTTTTACAGAAAAACCTACTGCAGACTattcatactgtgaacaagcatctaagtgtctactatccatcatgttctatgttagtagttggaggacatagtacat-gagtacacagtccatagggttcacagtcatggtccctgcccttggtggcggccctaggccaata-g-aggacacaaaAACCC-AC-AATT-GTGGTAGA-AGGTAAAAGGAATTGTGTGCTAGTCAAGGCTTTTCATT-------------------TGATC----AAGCAGTGAAGGAGG-----TATTGGAAGGTTATCAGTTAGCTCTCAGAATCAACAGGAAGTATAGAGAGCAATATTTGGGCAAGAGTAATACAGAGATGCAAGGCGTAGGCAAGATACTTCTGGAA-GAGGCATTTGTGTGACTTTATCA--------CTGAACATTTGTTACTTC--------------ACTGCTG-GACCTGCCTGTtcattcagtagctgtgaggagg----ctcaatttgagggagatagaattgccaatggggaggctaattaggaggctactcatgtatctaaggaag-agattatgagggcctgaattagggcaggggtgttaggtgtgaaaggcaagcagtaaataaagcaacttaaaggggtttaagttggcagggcttgagtac------tgat-tgataggagtaatgagtcagaggaagagtgactctgaaatttctagtttgagcagctgtttggttgatggtgccaacagttgggagagttccaagaggaacttcatgcttagggtagaaaaagatatgatcagttctgagctgcctgggacacatccaagtggagacttcgagcagggcattgatgtaagaatctaaag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64747014 1619 + 135191526 CTGTGTAAGTC-------TTCTTATTGGCATCTCCTGATAAGTGTCCCCACCCTGTCAC---CTCA-----TCAGACTGTTATGTCTCTGAGAACAGGAATCACATCCTC-----------------CTTACAATGCCTG----AT----AATATGTGGCATCAACAAACACTTTGAATTTAACCAATCTCTAAAGCCATTGTTGAGATTGATAGAAAAAAAA----AATAAAAAATCCTTAACATTTTTTTCCTGTAGTAAAAGA------GGTTGTGTTTAGTAATCCTTCCTACCATGGGACTTCAAACAG-TTTGAAGGCTTATGCTGTAATTTCCAAATATAACAGCAAAGCAGTATTACAGCTTGTCTCACCAGTACATGGCCTGTTTCATCCCTAATTTGCCAATGGACAAAAAGCTCTTAGATTATTTACCCATCAGGGATGCCTAAGTCCCTTGACTCTCTGCCATCACAAACAACCACAATGCAACCTTGAGAGT-GGCACTTCTGGGGCTGGAAAGTATTTTTTGGCAAAGGATGACCAGACTTTGAACTAGCTATGGAGAGC-AGGTGTTTCTGAGGCACTCAGGTGTGAGATGTCCATAGCACCCACCTTGATGGTTAAAAGCACATAAGGACATTTGTCTGCTCTGGGAAGAAGTTCTTATATATGGTTATGACAAATGGAGAAAGCAGAGGATCAGGTTTGCAAGTC----AGATCTTCCAGGATATTTGCTTTCTCTACTTTGTGAGAAATTTGCATGTGTTTTATGGGATTCTGAGGCTAAGAATAAGATAATAAAA-----CAAGTGGTATTATTACCATAATTTCATTGCATCATGAATAAATAATATGTTTTACAGAAAAACCTACTGCAGACTattcatactgtgaacaagcatctaagtgtctactatccatcaggttctatgttagtagttggaggacatagtacct-gagtacacagtccatagggttcacagtcatggtccctgccctttgtggcggccctaggccaata-g-aggaaacaaaAACCC-AT-AATT-GTGGTAGA-AGGTAAAAGGAATTGTGTGCTAGTCAAGGCTTTTCATT-------------------TGATC----AAGCAGTGAAGGAGG-----TATTGGAAAGTTATCAGTTAGCTCTCAGAATCAACAGGAAGTATAGAGAGCAATATTTGGGCAAGAGTAATACAGAGATGCAAGGTGTAGGCAAGATACTTCTGGAA-GAGGCATTTGTGTGACTTTATCA--------CTGGACATTTATTACTTC--------------ACTGCTG-GACCTGCCTGTtcattcagtagctgtgaggagg----ctcaatttgagggagatagaattgctaatggggaggctaattaggaggctacccatgtatctaaggaag-agattatgagagcctgaattagggcaggggggttaggtgtgaaaggcaagcagtaaataaagcaacttaaaggggattaagttggcagggcttgagtac------tgat-ggataggagtaatgagtcagaggaagagtgactctgaaatttctagtttgggcagctgtttggttgatggtgccaacagttgggagagttccaagaggaacttcatgcttagggtagaaagagatatgatcagttctgagctgcctgggacacatccaagtggagatttcgagcagggcattgatgtaagaatctaaag i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57787170 1612 - 122973662 CTGTGTAAGTC-------TTCTTATTGGCATCTCCTGATAAGAGTCCCCACCCTGTCAC---CTCA-----TCAGACTGTTATGTCTCTGAGAACAGGAATCACATCCTC-----------------CTTACAATGCCTG----AT----AATATGTGGCATCAACAAACACTTTGCATTTCACCAATCTCTAAAGCCATTGTTGAGATTGATAGAAAAAAAA-----------AATCCTTAACATTTTTTTCCTGTAGTAAAAGA------GGTTGTATTTAGTAATCCTTCCTACCATGGGACTTCAAAGAG-TTTGAAGGCTTATGTTGTAATTTCCAAATATAACAGCAAAGCAGTATTACAGCTTGTCTCACCAGTACGTGGCCTGTTTCATCCCTAATTTGCCAATGGACAAAAAGCTCTTAGATTATTTACCCATCAGGGCTGCCTAAGTCCCTTGACCCTCTGCCATCACAAACATCCACAATGCAACCTTGAGAGT-GGCGCTGCTGGGGCTGAAAAGTATTTTTTGGCAAAGGATGACCAGACTTTGAACTAGCTATGGAGAGC-GGGTGTTTCTGAGGCACTCAGGTGTGAGATGTCCACAGTACCCACCTTGATGGTTAAAAGCACATAAGGATATTTGTCTGCTCTGGGAAGAAGTTCTTATATATGGTTATGACAAATGGAGAAAGCAGAGGATCAGGTTTGCAAGTC----AGATCTTCCAGAATATTTGCTTTCTCTACTTTGTGAGAAATTTGCATGTGTTTTATGGGATTCTGAGGCTAAGAATAAGATAATAAAA-----CAAGTGGTATCATTACCATAATTTCATTGCATCATGAATAAATAATATGTTTTACAGAAAAACCTACTGCAGACTattcatactgtgaacaagcatctaagtgtctactatccatcaggttctatgttagtagttggaggacatagtacat-gagtacacagtccatagggttcacaatcatggtccctgcccttggtggcggccctaggccaata-g-aggaaacaaaAACCC-AT-AATT-GTGGTAGA-AGGTAAAAGGAATTGTGTGCTAGTTAAGGCTTTTCATT-------------------TGATC----AAGCAGTGAAGGAGG-----TATTGGAAGTTTATCAGTTAGCTCTCAGAATCAACAGGAAGTATAGAGAGCAATATTTGGGCAAGAGTGACACAGAGATGCAAGTTGTAGGCAAGATACTTCTGGAA-GAGGCATTTGTGTGCCTTTATCA--------CTGAACATTTGTTACTTC--------------ACTGCTG-GACCTGCCTGTtcattcagtagctgtgaggagg----ctcaatttgagggagagacagttgccaatggggaggctaattaagaggctacccatgtatccaaggaag-agattatgagggcctgaattagggcaggggtgttaggtgtgaaaggcaagcagtaaataaagcaacttaaaggggattaagttggcagggcttgagtac------tgat-ggataggagtaacgagtcagaggaagagtgactctgaaatttctagtttgggcagctgtttggttgatggtgccaacagttgggagagttccaagaggaacttcatgcttagggtagaaaaagatatgatcagttctgagctgcctggggcacatccaagtggagatttcgagcaggacattgatgtaagaatccaaag i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79720266 1630 + 112192347 CTGTGTAAGTC-------TTCTTATTGGCATCTCCTGATAAGAGTCTCCACCCTGTCAC---CTCA-----TCAGACTGTTATGTCTCTGAGAACAGGAATTACATCCTC-----------------CTTACAATGCCTG----AC----AATGTGTGGCATCAACAAACACTTTGAATTTAACCAATCTCTAAAGTCATTGTTGAGATTGATAGAAAAAAAA-------TTAAAACGCTTAACATTTTTTTCCTGTAGTAAAAGA------GGTTGTGTTTAATAATCCTTCCTACCATGAGACTTCAAAGAG-TTTGAAGGCTTGTGTTGTAAATTCCAAATATAACAGCAAAGCAGTATTACAGCTTGTCTCACCAGTACATGGCCTGTTTCATCCCTAACTTGCCAATGGACAAAAAGCTCTTGGATTATTTACCCATCAGAGCTGCCTAAGTCCCTTGACTCTCTGCCATCACAAACAATCACAATGCAACCTTGAGAGT-GGCGCTGCTGGGTCTGGAAAGTATTTTTTGGCAAAGGATGACCAGACTTTGAACTAGCAATGGAGAGT-GGGTGTTTCTGAGGCACTCGGTTATGAGATGTCCATAGTACCCACCTTGATGTTTAAAAGCACATAAGGATATTTGTCTGCTCTGGGAAGAAGTTCTCATATATGGTTATGACAAATGGAGAAAGCAGAGGATCAGGTTTGCAAGTCAGTGAGATCTTCCAGAATATTTGCTTTCTCTACTTTGTGAGAAATTTGCATGTGTTTTATGGGATTCTGAGGCTAAGAATAAGATAATAAAA-----CAAGTGGCATCATTACCATAATTTCATTGCATCATGAATAAATAATATGTTTTACAGAAAAAGCTACTGCAGACTATTCACACTGTGaacaagcatctaagtgtctactatccatcaggttctatgttagtagttggaggacatagtacat-gagtacatggtccatagggttcacagtcatggtccctgcccttggtggtggccctaggccaata-g-aggaaacaaaAACCC-AT-AATT-GTGGTAGA-AAGTAAAAGGAATTGTGTGCTAGTCAAGGCTTTTCATT-------------------TGATC----AAGGAGTGAAGGAGG-----TATTGGAAGGTTATCAGTTAGCTCTCACAATCAACAGGAAGAATAGAGAGCAACATTTGGGCAAGAGTAATACAGAGATGCAAGGTGTAGGCAAGGTACTTCTGGAA-GAGGCATTTGTGTGACTTTATCA--------CTGGACATTTGTTACTTC--------------ACTGCTG-GACCTGCCTGTTCATTCAGTAGCTGTGAGGAGGCTCCCTCAATTTGaggcagacagaattgccaatggggaggctaattaggaggctacccatagatctaaggaag-agattacgagggcctgaattagggcagaggtgttaggcatgaaaggcaaggggtaaataaagcaacttaaaggggattaagttggtagggcttgagtactgataatgat-ggataggagtaatgagtcagaggaagagtgactctgaaatttctagtttgggcagctgtttggttgatggtgccaacagttgggagagtttcaagaggaacttcatgcttaggatagaaaaagatatgatcagttctgagctgcctgggacacatccaagtggagatttcgagcagggcattcatgtaagaatctaaag i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80801104 1630 + 112612857 CTGTGTAAGTC-------TTCTTATTGGCATCTCCTGATAAGAGTCTCCACCCTGTCAC---CTCA-----TCAGACTGTTATGTCTCTGAGAACAGGAATTACATCCTC-----------------CTTACAATGCCTG----AC----AATGTGTGGCATCAACAAACACTTTGAATTTAACCAATCTCTAAAGTCATTGTTGAGATTGATAGAAAAAAAA-------TTAAAATGCTTAACATTTTTTTCCTGTAGTAAAAGA------GGTTGTGTTTAATAATCCTTCCTACCATGAGACTTCAAAGAG-TTTGAAGGCTTGTGTTGTAAATTCCAAATATAACAGCAAAGCAGTATTACAGCTTGTCTCACCAGTACATGGCCTGTTTCATCCCTAACTTGCCAATGGACAAAAAGCTATTGGATTATTTACCCATCAGAGCTGCCTAAGTCCCTTGACTCTCTGCCATCACAAACAATCACAATGCAACCTTGAGAGT-GGCGCTGCTGGGTCTGGAAAGTATTTTTTGGCAAAGGATGACCAGACTTTGAACTAGCAATGGAGAGT-GGGTGTTTCTGAGGCACTCGGTTATGAGATGTCCATAGTACCCACCTTGATGTTTAAAAGCACATAAGGATATTTGTCTGCTCTGGGAAGAAGTTCTCATATATGGTTATGACAAATGGAGAAAGCAGAGGATCAGGTTTGCAAGTCAGTGAGATCTTCCAGAATATTTGCTTTCTCTACTTTGTGAGAAATTTGCATGTGTTTTATGGGATTCTGAGGCTAAGAATAAGATAATAAAA-----CAAGTGGCATCATTACCATAATTTCACTGCATCATGAATAAATAATATGTTTTACAGAAAAAGCTACTGCAGACTATTCACACTGTGAACAAGCATCTAAGTGTCTACTATCCATCAGGTTCTATGTTAGTAGTTGGAGGACATAGTACAT-GAGTACATGGTCCATAGGGTTCACAGTCATGGTCCCTGCCCTTGGTGGTGGCCCTAGGCCAATA-G-AGGAAACAAAAACCC-AT-AATT-GTGGTAGA-AAGTAAAAGGAATTGTGTGCTAGTCAAGGCTTTTCATT-------------------TGATC----AAGGAGTGAAGGAGG-----TATTGGAAGGTTATCAGTTAGCTCTCACAATCAACAGGAAGAATAGAGAGCAACATTTGGGCAAGAGTAATACAGAGATGCAAGGTGTAGGCAAGGTACTTCTGGAA-GAGGCATTTGTGTGACTTTATCA--------CTGGACATTTGTTACTTC--------------ACTGCTG-GACCTGCCTGTTCATTCAGTAGCTGTGAGGAGGCTCCCTCAATTTGaggcagacagaattgccaatggggaggctaattaggaggctacccatagatctaaggaag-agattacgagggcctgaattagggcagaggtgttaggcatgaaaggcaaggggtaaataaagcaacttaaaggggattaagttggtagggcttgagtactgataatgat-ggataggagtaatgagtcagaggaagagtgactctgaaatttctagtttgggcagctgtttggttgatggtgccaacagttgggagagtttcaagaggaacttcatgcttaggatagaaaaagatatgatcagttctgagctgcctgggacacatccaagtggagatttcgagcagggcattcatgtaagaatctaaag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76850209 1630 + 107442819 CTGTGTAAGTT-------TTCTTATTGGCATCTCCTGATAAGAGTCTCCACCCTGTCAC---CTCA-----TCAGACTGTTATGTCTCTGAGAACAGGAATTACATCCTC-----------------CTTACAATGCCTG----AC----AATGTGTGGCATCAACAAACACTTTGAATTTAACCAATCTCTAAAGTCATTGTTGAgattgatagaaaaaaaa-------ttaaaacgcttaacatttttttcctgtagtaAAAGA------GGTTGTGTTTAATAATCCTTCCTACCATGAGACTTCAAAGAG-TTTGAAGGCTTGTGTTGTAATTTCCAAATATAACAGCAAAGCAGTATTACAGCTTGTCTCACCAGTACATGGCCTGTTTCATCCCTAACTTGCCAATGGACAAAAAGCTCTTGGATTATTTACCCATCAGAGCTGCCTAAGTCCCTTGACTCTCTGCCATCACAAACAATCACAGTGCAACCTTGAGAGT-GGCGCTGCTGGGTCTGGAAAGTATTTTTTGGCAAAGGATGACCAGAATTTGAACTAGCAATGGAGAGA-GGGTGTTTCTGAGGCACTCGGTTATAAGATGTCCATAGTACCCACCTTGATGTTTAAAAGCACATAAGGATATTTGTCTGCTCTGGGAAGAAGTTCTCATATATGGTTATGACAAATGGAGAAAGCAGAGGATCAGGTTTGCAAGTCAGTGAGATCTTCCAGAATATTTGCTTTCTCTACTTTGTGAGAAATTTGCATGTGTTTTATGGGATTCTGAGGCTAAGAATAAGATAATAAAA-----CAAGTGGCATCATTACCATAATTTCACTGCATcatgaataaataatatgttttacaGAAAAAGCTACTGCAGACTATTCACACTGTGAACAAGCATCTAAGTGTCTACTATCCATCAGGTTCTATGTTAGTAGTTGGAGGACCTAATACAT-GAGTACATGGTCCATAGGGTTCACAGTCATGGTCCCTGCCCTTGGTGATGGCCCTAGGCCAATA-G-AGGAAATAAAAACCC-AT-AATT-GTGGTAGA-AAGTAAAAGGAATTGTGTGCTAGTCAAGGCTTTTCATT-------------------TGATC----AAGGAGTGAAGGAGG-----TATTGGAAGGTTATCAGTTAGCTCTCACAATCAACAGGAAGAATAGAGAGCAACATTTGGGCAAGAGTAATACAGAGATGTAAGGTGTAGGCAAGGTACTTCTGGAA-GAGGCATTTGTGTGACTTTATCA--------CTGGACATTTGTTACTTC--------------ACTGCTG-GACCTGCCTGTTCATTCAGTAGCTGTGAGGAGGCTCCCTCAATTTGAGGCAGACAGAATTGCCAATGGGGAGGCTAATTAGGAGGCTACCCATAGATCTAAGGAAG-AGATTACGAGGGCCTGAATTAGGGCAGAGGTGTTAGGCATGAAAGGCAAGGGGTAAATAAAGCAACTTAAAGGGGATTAAGTTGGTAGGGCTTGAGTACTGATAATGAT-GGATAGGAGTAATGAGTCAGAGGAAGAGTGACTCTGAAATTTCTAGTTTGGGCAGCTGTTTGGTTGATGGTGCCAACAGTTGGGAGAGTTTCAAGAGGAACTTCATGCttaggatagaaaaagatatgatCAGTTCTGAGCTGCCTGGGACACATCCAAGTGGAGATTTCGAGCAGGGCATTCATGTAAGAATCTAAAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81113798 1630 + 108555830 CTGTATAAGTC-------TTCTTATTGGCATCTCCTGATAAGAGTCTCCACCCTGTCAC---CTCA-----TCAGACTGTTATGTCTCTGAGAACAGGAATTACATCCTC-----------------CTTACAATGCCTG----AC----AATGTGTGGCATCAACAAACACTTTGAATTTAACCAATCTCTAAAATCATTTTTGAGATTGATAGAAAAAAAA-------TTAAAACGCTTAACATTTTTTTCCTGTGGTAAAAGA------GGTTGTGTTTAATAATCCTTCCTACCATGAGACTTCAAAGAG-TTTGAAGGCTTGTGTTGTAATTTCCAAATATAACAGCAAAGCAGTATTACAGCTTGTCTCACCAGTACATGACCTGTTTCATCCCTAACTTGCCAATGGACAAAAAGCTCTTGGATTATTTACCCATCAGAGCTGCCTAAGTCCCTTGACTCTCTGCCACCACAAACAATCACAATGCAACCTTGAGAGT-GGCGCTGCTGGGTCTGGAAAGTATTTTTTGGCAAAGGATGACCAGACTTTGAACTAGCAATGGAGAGT-GGGTGTTTCTGAGGCACTCGGTTATAAGATGTCCATAGTACCCACCTTGATGTTTAAAAGCACATGAGGATATTTGTCTGCTCTGGGAAGAAGTTCTCATATATGGTTATGACAAATGGAGAAAGCAGAGGATCAGGTTTGCAAGTCAGTGAGATCTTCCAGAATATTTGCTTTCTCTACTTTGTGAGAAATTTGCATGCGTTTTATGGGATTCTGAGGCTAAGAATAAGATAATAAAA-----CAAGTGGCATCATTACCATAATTTCCCTGCATCATGAATAAATAATATGTTTTACAGAAAAAGCTACTGCAGACTATTCACACTGTGAACAAGCATCTAAGTGTCTACTACCCATCAGGTTCTATGTTAGTAGTTGGAGGACATAGTACAT-GAGTACATGGTCCATAGGGTTCACAGTCATGGTCCCTGCCCTTGGTGGTGGCCCTAGGCCAATA-G-AGGAAACAAAAACCC-AT-AATT-GTGGTAGA-AAGTAAAAGGAATTGTGTGCTAGTCAAGGCTTTTCATT-------------------TGATC----AAGGAGTGAAGGAGG-----TATTGGAAGGTTATCAGTTAGCTCTCACAATCAACAGGAAGAATAGAGAGCAACATTTGGGCAAGAGTAATACAGAGATGCAAGGTGTAGGCAAGGTACTTCTGGAA-GAGGCATTTGTGTGACTTTATCA--------CTGGACATTTGTTACTTC--------------ACTGCTG-GACCTGCCTGTTCATTCAGTAGCTGTGAGGAGGCTCCCTCAatttgaggcagacagaattgccaatggggaggctaattaggaggctacctatagatctaaagaag-agattacgagggcctgaattagggcaggggtgttaggcatgacaggcaaggggtaaataaagcaacttaaaggggattaagttggtagggcttgagtactgataatgat-ggataggagtaatgagtcagaggaagagtgactctgaaatttctagtttgggcagctgtttggttgatggtgccaacagttgggagagtttcaagaggaacttcatgcttagggtagaaaaagatatgatcagttctgagctgcctgggacacatccaagtggagatttcgagcagggcattgatgtaagaatctaaag i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111336679 1574 - 210400635 CTGTGTAAATC-------TTTTGATTAGCATCTCCTCCTAAGAGTCTCCACCCTGTCAC---CTCA-----TCGGACTGT------TCTGAGAACAAGAATCACATCCTC--------------------ACAGTGCCTGACAAAC----AATATGTGGTGTCAACAAACACGTTGAATTTAATTAATCTCTAAAGCCATTGTTGAGAT--------AAAAAT-------AGAAAATCCTTAACTTTTTTTTCCTGTTGTAAAAGA------GATTGTCTTTAGAAATCCTTCCTACCATGGGACTTCAAAGAC-TTTGAAGGCTTATGTTGTAATTTCCAAATATAACAGTGAAGCAGTATTACAGCTTGTTTCACCAGTACATGGCCTGTTTCATTACTGACTTGCCAATGAACAAAAAACTCTTGGATTATTTACCCATCAGGGCTGCCTAAGTCCCTTGATTCTCTGCCATCACAAACAATCACAATGCAACCTTGAGA---GACACTGCTGGATCTG-AAAGTATTTTTTGGCCAAAGATGACCAGACTTTTAACTAGCAATGGAGAGT-GGGTGTTTCTGAGGCACTCAGATGTGAGGTGTCCATAGTACCCAACTCGATGGTTTAAAGCACGTAAGAATATTTGTCTGCTCTGGGAAGAAGTTCTCATATATGACTATGACAAATGGAGAAAGCAGAGGATCAGGTCTGCAAGTCAGTGAGATCTTCCAGAATATTTTCTTTCTCTACTTTGTGAGAAATTTGCATGTGTTTTATGGGATTCTGAGGCTAAGAATAAGATAATAAAA-----CAAGTGACATCAT--------------TGCATCATGAATAAATAATATGTTTTACAGAAAAAGCTACTGAAGACTATTCAta--------------ctaagtgtctactatccgtcaggtactacgttagtagttggaggacatagtacct-gagtacacggtccttaaagtttacagttatggtccctgcccttagtcgtggccctagaccaata-g-aggaagcaaaAACCCTGC-AATT-ATGATAGA-AAATAAAAGGAATTGTGTACTAGTCAATGCCTTTCATT-------------------AGATC----AAGCAGTAAAGGAGG-----TATTGGAAGGTTATCAATTAGCTCTCAGAATCAATAGGGAGTATAGAGAGCAATATTT-GGCAAGAGTAATACAGAGATGCAAGGTGTAGGCAAGATACTTCTGGAAGGAGGCATTTGTGTGACTTTATCA--------CTGGCCATTTATTACTTT--------------ACTGCTG-GACCTGCCTCTtcattcagtagctgtga-gagg----ctcaatttgagggagatagaattggcaatggggaggctaattaggaggctacccatggatctaaaggggaaaatgatgagggcctgaattagggcaggggtgttaggtatggaaggcaaggagtagataaagcaccataaaggggattaagttggcagggcttgaggac------tgat-ggaaaggagtgatgagtcagagtaagagtga--ctgaaatttctagtttgggcagctgttaggttgatggtgccaacagttgggagagtttcaaaaggaacttcatgtttagggtagaaa-agatatgatcatttctgagctgcctgggaaatatccaagtggatatttctaggagggcattgatgtaggaatgtaaag i calJac3.chr1 I 297 C 0 s mm10.chr19 37992214 1509 - 61431566 --CTGTATGTCCTGTAAATTCTTATTAGTGTCTCCT-ATTGGAGCCTCCGCCCCTTCAC---CTCA-----TCAGA----------------------------------------------------------GGCCTG----ATGAGGAGTATTTGGCATCAGCAAACACCCTGAACCTAATCAATCCCTAATGTCCTTCTGAAAGT----AGAAAGAAAA-------ATAAAAGCCTTCACTAGTTTTCCTTGTAGTGAAAGAGGTTTTGGTTGTGTTTAGTAGCCTTTCCTAC---------TGGATGAC-TTTAGAGGCTCACATTGTAATTTACAGATGTAACGGTGTAATAGCATC-CAGCTTAACTCACCGATGCCTG----------TCTGTGGTGCATCAGTGGACAAATAGCTCTTGGGTTATTC-TCCATCAATGCTGCCTAAATGCCTTGACCCTCTACCAACATAAATAACCACAGTGAGGGCTTGAGAGC-ACTCCTGCTGGCTCTGGGAAGTAGCTTTTGGCCAAAGA------------GGATTAGCTGTTGAAAAT--GGCATTTCTAAGGACTTCAAGTATGAGGTGTCAGTAGTGCTCATTTTTATAGGGGTAAGTAGAGATGGATACTCGTCTATCTATGAAGGGAATCCATATGAAGGAAGGTGACAACTGGGAAAACCAGAAAATGAGGACAGC-AGTCAGTAAGATCTGCTGGGATGTCTGATTCTCCTGCTTCATGAGAAAGTGAAGTGTG-TTTGGGGGACTCTGAGACTAAGAATGAGATAATGAAA-TAACCAAGCGGTGTAATGA-CAGAAGTCCAAAGTACTGTGAACGGATCCTA-GTCTATAGGAAAGGGCTGTTAAAGAATATTTATCCTATCAGCAAGCTTTTTAATGCTTGCTA------GGGAGCTATGTTGGTAGGTGGGGGACACATTGCATAGGGTACA-AGTGTATAGAGTTTGTAGACATAGGTTCTGTCCTTGGTGGCAGTCAAAGACTAACAGG-ATTAGAGAAGTATCT-AT-AATTCATGGGAGA-GAATAAAAAGAACTGTGTA-TAGTCACAGATCATAATTGCAAATGACAAAAG-----TGGTCATTTAAGTAAGACAGAAGGGAACTTGTTTGAAGGGAATCTGTTAGCTCCCGACATCAATATGCTTTTTAGAGGG----GTTTGAATGGGAATAA---AGAGAT-----------GCAAGATATTTCT---A-GAGCTATTTCTATGACCTTCCCA--------TTAGATATTGGTTACTCC--------------ACACCTG-GACCTG--TGTT--TTCAGTAGCTATGAGG-------CT--ACTCTGGGTAGGAGGAGT-----------ACACTACCTGAG-GACTGTTCAGTGATCTGAG--AG-GTGATACAAGGA---AGATTGGAGCTGGGGAGTTGTGTATGAGGGG-GAGAAATGAGTACTATACTACAAAGGGGAGTCACATAGCCTG--CTAAATGT------CCTT-GGATC-CAGTAATGAGTCA-AGGAAG-GTGGCTGTCAGATGTCTAGTCTGGGAA-----------GGTGCCACTAAGATTTGAAACAAATTCAAGAAGAATATCATATCTAAGATAGGAAAGGACATTATATCTCCTAGGCTGCTTGGGAGAGATCCAAGTGCGGGTCTCTGGTAGGTGTTTGATGTAAATATCTAAAG i mm10.chr19 C 0 I 1609 s canFam3.chr1 35234955 1626 - 122678785 -----------------------CCAGGTGTCT--------AGATCCCCACCCCTTCACCGGCCCAGAGGCCCAGAGCGTTACATCTTTGAGAACAGGGATCACATCCTCCACCGCACCCCCCCACCCCCGCAACACCCAACAAAC----AGCATGTGGTATCAGCAAACTCTTCAAAATTAATCAGTCTGTAAAGCC-CTATTGAGATTGATAGGAAAAAAAGGGGGGGAGGGAATCCTTGACA-TCTCCCCTTATAGTAAGAGA------AGTTGTGTTAAATAATCCTTCCTACTATAGGACTTCAAGGACTTTTGGAAGCTAGTGTTGTAATTTCCAAGTATAACAGGGAAGCAGTGTCTCAGCTTGTCTGACCCACAGGTGGTCTATTCTGTCTATGACATACCAAGGGACTAATAGCCCTTGGTTTATTGACTCATCAAGGCTACCTGAGTCCCTTGATCCTCTGCCATCACAAACAATCACAATGCAACATTGAGAGT-GACACTGCTTGGTCTATAAAGTA-TTTTTAGCCAAAGATTATCAGACATTGAGCTAGCTTTTGAGAGCTGTTTTTTTCTAAGGGG---AAGTGTAAGACAGCAGCAGTAGCCAC--TGATGGATTAAAGCAGTTA--GATATTTGTCTGCTCTTGGAAGAAGCCCTTGCATATGGGTATGGCTATTGAGAAAACCTAAGGATTGGGTTCGTGATTCAGTGACATGTGTCAGAATATTTGCCTTCCCTACTTTGTGAGAAAGTCATTTGTGTTTTGGAGGATTCTGAGGCTAAGAATAAGATAATAAAACCAAACAAATG-------TACCATAACTTCATAGTATCATGAATGAATCATACATTTCACAGAAAAAGCATCTA-AGAATattcattctaccaatgtgcatttgagtgcctactctccatcaggcattatattcatagttggagtacata-------gaggtcagggagtata---tacatggtcatggtccctgcccttgg---cagccatagaccaata-gaaggagacacaaatct-aGAAATT-ATGGTACAGAAGCAAATGGAATTGTACACTagtcaaggatcttcattgtaaacagcataagttggctattt----aagcaggaaaatgag---tttattagaaaggca----tgagcttttagaatcaacaaagagtctagagagctatgtttggGCAAGAATAA---AGAGATACAAAGTGTAGGTAAGACTCTTTTGGAG-GAACCATTTGTGTGACTTTGTTACTGTCCTGCTGGACATGTAATTTTCCTTGAGACTGTGAGTATTGATGTGGCCTGCTATCcagtctagtagctgtgaggagg----gtcgatttgagggagataagcctggcaatggggaagctagttagggagcaatccattggtccagctgag-agatgatgagagcttgaagtgggacaggggtaataggagtgaaagg----aagtaaataaaacaccaaaaaggagacgaaattggcagggcttgatgat------tgatggggtgggaatgatgagtcagagggagaatgactccctggattctagt-tggacagctgtttgg----cagtgcctacagttgaggga-tttcaagagcagcctcctggtaagggtggaagagg---tgtgccattctgagttgcgtgggaaacaaacaagtggaggcct-----------ttgatgcaagaattggaag i canFam3.chr1 C 0 C 0 a score=68624.000000 s hg38.chr9_GL383541v1_alt 30056 18 + 171286 atcaggtatagtctgggc s panTro4.chr9 68595558 18 + 137840987 atcaggtatagtctgggc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64748633 18 + 135191526 gtcaggtatagtctgggc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57788782 18 - 122973662 gtcaggtatagtctgggc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79721896 18 + 112192347 gtcaggtatagtctgggc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80802734 18 + 112612857 gtcaggtatagtctgggc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76851839 18 + 107442819 GTCAGATATAGTCTGGGC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81115428 18 + 108555830 gtcaggtatagtctgggt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111338253 18 - 210400635 atcagtcatagtctgggc i calJac3.chr1 C 0 C 0 s canFam3.chr1 35236581 18 - 122678785 gtcaggtacagtctgggc i canFam3.chr1 C 0 C 0 e mm10.chr19 37993723 1609 - 61431566 I a score=1616367.000000 s hg38.chr9_GL383541v1_alt 30074 494 + 171286 aggagta------tgggaacctttagc-----agaaaggtagtagttaaaa---ttacgagcagaga--------------tgatatcacccaaggagaatggataaagtaa-taacagcaggaggctaagaaaagatgccttgagctcacatttaaggattaggtataggaaggagatggggacatgaaagaaacaggaagaaccgggcatgtatgagaagaattaggaaagtggaagattgtagaagc-aaaggagttaggattttc-aaaagga-----------------------------------------ggacgtgatc----------------------aGTGGGGCCC---------------------------------------------------------CATGCAGTAGGGTG-----------------------GAA----CAAATGGGAAATGTCAATAGTTGGTAAAGACTTCT-------------------------------CAGCAAAAAAAG------------------------TTTA--------------------------------------GATGTGAGA--------AGAAAGGG-----GTTCAACCATACCTA--------CAAAGAAAC----TTTGAGATGAAAGtttt-at-----tttttt----------------tttcgttttgttttgttttAGGAAGGGGGGACTTGAGCTTGTTTCTATAGTAAGG-GGAAGGGACCAGCAAAGAAAGAAGAT--TGAAAAGAGGGGG- s panTro4.chr9 68595576 495 + 137840987 aggagta------tgggaacctttagc-----agaaaggtagtagataaaa---ttacgagcagaga--------------tgatatcacccaaggagaatggataaagtaa-taacagcaggaggctaagaaaagatgccttgagctcacatttaaggattaggtataggaaggagatggggacatgaaagaaacagaaagaaccaggcatgtatgagaagaattaggaaagtggaagattgtagaagc-aaaggagttaggagtttc-aaaagga-----------------------------------------ggacgtgatc----------------------aGTGGGGCCC---------------------------------------------------------CATGCAGTAGGGTG-----------------------GAA----CAAATGGGAAATGTCAATAGTTGGTAAAGACTTCT-------------------------------CAGCAAAAAAAG------------------------TTTA--------------------------------------GATGTGAGA--------AGAAAGGG-----GTTCAACCATACCTA--------CAAAGAAAC----TTTGAGATGAAAGTTTTTAT-----TTTTGT----------------TTTCGTTTTGTTTTGTTTTAGGAAGGGGGGACTTGAGCTTGTTTCTATAGTAAGG-GGAAGGGACCAGCAAAGAAAGAAGAT--TGAAAAGAGGGGG- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64748651 495 + 135191526 aggagta------tgggaacctttagc-----agaaaggtagtggttaaaa---ttacgagcagaga--------------tgatatcacccaaggagaatagataaagtaa-taacagcaggaggctaagaaaagatgccttgagctcacattgaacgattaggtataggaaggagatggggacatgaaagaaacagaaagaaccaggcatgtatgaggagaattaggaaagtggaagattgtagaagc-aaaggagttaggagtttc-aaaagga-----------------------------------------ggatgtgatc----------------------aGTGGGGCCC---------------------------------------------------------CATGCAGTAGGGTG-----------------------GAA----CAAATGGGAAATGCCAATAGTTGGTAAAGACTTCT-------------------------------CAGCAAAAAAAG------------------------TTTA--------------------------------------GATGTGAGA--------AGAAAGGG-----GTTCAACCATACCTA--------CAAACAAAC----TTTGAGATGAAAGTTTTTAT-----TTTTGT----------------TTTCATTTTGTTTTGTTTTAGGAAGGGGGGACTTGAGCTTGTTTCTATAGTAAGG-GGAAGGGACCAGCAAAGAAAGAAGAT--TGAAAAGACGGGG- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57788800 494 - 122973662 aggagta------tgggaaccttcagc-----agaaagatagtggttaaaa---ttacgagcagaga--------------tgatatcacccaaggagaatggataaagtaa-taacagtaggaggctaag-aaagatgccttgagctcacatttaagaattaggtataggaaggagatggggacatgaaagaaacagaaagaaccaggcatgtatgaggagaattaggaaagtggaagattgtagaagc-aaaggagttaggagtttc-aaaagga-----------------------------------------ggatgtgatc----------------------aGTGGGGCCC---------------------------------------------------------CATGCAGTAGGGTG-----------------------GAA----CAAATGGGAAATGTCAATAGTTGGTAAAGACTTCT-------------------------------CAGCAAAAAAAG------------------------TTTA--------------------------------------GATGTGAGA--------AGAAAGGG-----GTTCAACCATACCTA--------CAAAGAAGC----TTTGAGATGAAAgtttttat-----ttttgt----------------tttcgttttgttttgttttAGGAAGGGGGGACTTGAGCTTGTTTCTATAGTAAGG-GGAAGGGACCAGCAAAGAAAGAAGAT--TGAAAAGAGGGGG- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79721914 501 + 112192347 aggacta------tggtaaccttcagc-----agaaaggcagtggttaaaa---ttatgagcagaga--------------cgatatcatccaaggagaatgaataaagtaa-taacagcaggagactaag-aaagatgccttgagctcacatttaaggattaggtgtaggaaggagatggggacatgaaagaaacagaaggaactgggtatgtatgaggagaattaggaaagtaaaagattgtagaagc-aaaggagttaggaatttc-aaaagga-----------------------------------------ggatgtgatc----------------------agtggcgccc---------------------------------------------------------catgcAGTAGGGTG--------------------GAAGAA----CAAATGGGAAATGTCAATAGTTGGTAAAGACTTCT-------------------------------CAGCAAAAAAAG------------------------TTTA--------------------------------------GATGTGAGA--------AGAAAGGG-----CTTCAACCATACCTA--------CAAAGAAAC----TTTGAGATGAAAGTTTTTATttttgttttg-----------------ttttgttttgttttgttttAGGAAGGGGAGACTTGAGCTTGTTTCTATAGTGAGG-GGAAGGGACCAGCAAAGAAAGAAGAT--TGAAAAGAGGGGG- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80802752 496 + 112612857 aggacta------tggtaaccttcagc-----agaaaggcagtggttaaaa---ttatgagcagaga--------------cgatatcacccaaggagaatgaataaagtaa-taacagcaggagactaag-aaagatgccttgagctcacatttaaggattaggtgtaggaaggagatggggacatgaaagaaacagaaggaactgggtatgtatgaggagaattaggaaagtgaaagattgtagaagc-aaaggagttaggaatttc-aaaagga-----------------------------------------ggatgtgatc----------------------agtggcgccc---------------------------------------------------------catgcAGTAGGGTG--------------------GAAGAA----CAAATGGGAAATGTCAATAGTTGGTAGAGACTTCT-------------------------------CAGCAAAAAAAG------------------------TTTA--------------------------------------GATGTGAGA--------AGAAAGGG-----CTTCAACCGTACCTA--------CAAAGAAAC----TTTGAGATGAAAGTTTTTAT-----TTTTG-----------------TTTTGCTTTGTTTTGTTTTAGGAAGGGGAGACTTGAGCTTGTTTCTATAGTGAGG-GGAAGGGACCAGCAAAGAAAGAAGAT--TGAAAAGAGGGGG- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76851857 497 + 107442819 AGGACTA------TGGTAACCTTCAGC-----AGAAAGGCAGTGGTTAAAA---TTATGAGCAGAGA--------------TGATATCACCCAAGGAGAGTGAATAAAGTAA-TAACAGCAGGAGACTAAG-AAAGATGCCTTGAGCTCACATTTAAGGATTAGGTGTAGGAAGGAGATGGGGAcatgaaagaaacagaaggaactGGGTATGTATGAGGAGAATTAGGAAAGTGAAAGATTGTAGAAGC-AAAGGAGTTAGGAATTTC-AAAAGGA-----------------------------------------GGATGTGATC----------------------AGTGGGGCCC---------------------------------------------------------CATGCAGTAGGGTG--------------------GAAGAA----CAAATGGGAAATGTCAATAGTTGGTAGAGACTTCT-------------------------------CAGCaaaaaaaG------------------------TTTA--------------------------------------GATGTGAGA--------AGAAAGGG-----CTTCAACCGTACCTT--------CAAAGAAAC----TTTGagatgaaagtttttat-----ttttgt----------------ttttgtttcgttttgttttaggAAGGGGAGACTTGAGCTTGTTTCTGTAGTAAGG-GGAAGAGACCAGCAAAGAAAGAAGAT--TGAAAAGAGGGGG- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81115446 496 + 108555830 aggacta------tggtaaccttcagc-----agaaaggcagtggttaaaa---ttatgagcagaga--------------tgatatcacccaaggagaatgaataaagtaa-taacagcaggaggctaag-aaagatgccttgagctcacatttcaggattaggtgtaggaaggagatggggacatgaaagaaacagaaggaactgggcatgtatgagga-aattagggaagtgaaagattgtagaagc-aaaggagttaggaatttc-aaaagga-----------------------------------------ggatgtgatc----------------------aGTAGGGCCC---------------------------------------------------------CATGCAGTAGGGTG--------------------GAAGAA----CAAATGGGAAATGTCAATAGTTGGTAGAGACTTCT-------------------------------CAGCAAAAAAAG------------------------TTTA--------------------------------------GATGTGAGA--------AGAAAGGG-----GTTCAACCATACCTA--------CAAAGAAAC----TTTGAGATGAAAgtttttat-----ttttgt----------------ttttgttttgttttgttttAGGAAGGGGAAACTTGAGCTTGTTTCTATAGTGAGG-GGAAGGGACCAGCAAAGAAAGAAGAT--TGAAAAGAGGGGG- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111338271 491 - 210400635 aggacta------ttggaaccttcaac-----agaaaggtagtggttaaaa---ttacgagcagaga--------------tggtatcacccaaagagaatggataaggtaa-taatagcaggaggctaag-aaacatgccttgagctcatatttaa-------gtatagg-aggggatagggacatgaaagaaatggaaggaaccaggcatgtatgaagggaattaggaaagtgaaagattgtagaagcaaaaggaattcaaaatttcaaaaagga-----------------------------------------ggatgtgatc----------------------aGTGGGGCCC---------------------------------------------------------CATGAAATAGGGCG--------------------GAAGAA----AGAATGGGAAATGTCAGTGGTTGGTAGAGACTTCT-------------------------------CAGCAAGAAAAG------------------------TTTA--------------------------------------GATGTTGGA--------AGAAAGGG-----GTTCAACCGTACCTA--------CAAAGAAAC----TTTGAGATGGAAGTTTTTAT-----TTTCGT----------------TTTTGTCTTGTTTTGTTTTATGAAGAGGAGACTTGAGCTTGTTTCTGTAGTGAGA-GGAAGAGACCAGCAAAGAAAGAAGAT--TCAAAAGAGGGGG- i calJac3.chr1 C 0 C 0 s mm10.chr19 37995332 702 - 61431566 AAGAGTC------TGGAAATCGTTTGCATCTTAGACAGACAGTGGCTGCAGAGTCTCCAAGCAGACAAAGAGCCAAAAAATCGATCCCAGATGATGGAGACGCTTTAGGTGA-TAACAGCAGGAGGCCAAG-AATGGAGCTTTATGCTCA------------GTGTATAGGAAGGAGATAAAGGCGTGAGAGAAGCAGAAGGAATGAGGAGTGCATGCAGGGAACTGGGAAAGAGAAAGG-TGCAGCAGCCAACGGGGTGGGGCCTGCC-AATGAGAACAGCCAATGGGGTGGGACCTGCCAATGAGAGCAGCCAATGGGGTGGGACCTGCCAATGAGCGCAGCCAAAGGGGTGGGGCCT---------------------------------------GCCAATGAGAG-------CAGCCAATGGGGTG-----------------------GGACCTGCCAATGAGAGCAGCCAATGG--GGTGGGGCCTGCCAATGAGAGCATTCAATCAACCTCACCCTGGGCAGCACAGAGAGGGTCATACAGCTTGGTCACTAGGCTTGATCATCCATAGTGCACAGCAGGTGCGTTCTCAGTGGAATGATGACAGC--------AGAAGAGGAACATATTGAATGGGACCTATTGTTTGGCGGAAAAAT----TCTCAGCAAAAAGATTTGAA-----CATTAGAGGAGAGATTCAGCTATTTTCTTTTGTACTG-TTTAGGAAGTGGAGCCCGGACCTTGCTTGCAGATTAGGGAGGAAGGATCTAGCGAAGAAAGAGGAT--TCAGCAGAAAGAG- i mm10.chr19 I 1609 I 11 s canFam3.chr1 35236599 581 - 122678785 aggactacgtccgtgggaatcctcagt-----gtgaagacagtggttgaaa---tcttgagcaggga--------------taagattccccggggagaaaatacaaagtggttaagagcaggaggctgag-ggcagagcctagag-tcac-tGTGCAGACTAGACATGGTAAGGGGGTGGTGGAGTGAGAGGCCCAGGAGGAACCAGGCACATTTGAAGAGAATTAGGGAAGTG-CAGGTCACAAAGGCCAAAGCAGTTCGGAGTTTC-AGAAAGG-----------------------------------------GCATGTGACC----------------------AACAGGGCCCAGGGCAGGGCAACCTCTGCAACAGCCTTGTCTGTTGATTGACAATTGGTGCAGTTTCCATGGAATGAGGAGGACAGACCAGAACCTCCAGGGAACAA----TGAAGGGAAAATGCAGAGAG----CAGAGAAATCT-------------------------------CAGCAAGAAA--------------------------CTTG--------------------------------------GGTGTTCTCCCTTTCTTACAGGGAG-----GTTCAGCCAGATTTA--------CCAAGAAACATGATTTGA----AAGGTTTTTGT-----TTTTA-----------------TTTTGTCTCACTTTGTATT-TTAAGCGAGACCTTGAGTTTGTTTATGGAGTGAGG-GGAAAGGACCAGT-AAGAAAGGAGTTTCTGGAGAGAGGGGGA i canFam3.chr1 C 0 C 0 a score=871194.000000 s hg38.chr9_GL383541v1_alt 30568 251 + 171286 GCTTCCTTGCTAGCTCTGGATTAGATCCAAGTTCCACTTTGATGATTCAGAAACCCTAAGAGCCTGGGAATTCCTTTGTACCCGTATAATTCCAAGTACCCTCCACTGAGTGGCTTGTGGGCACTGGAGTGTCGACTTC-AAATGTGTGAAATTTTATTTCTACTGTAAATACAGGGGAGGTGGGAGCTTGGGCTGAATCTGTGGTAATTATGATGTGCCCTGGAACTTACTCATTGAAAAACAAAAACAAg s panTro4.chr9 68596071 251 + 137840987 GCTTCCTTGCTAGCTCTGGATTAGATCCAAGTTCCACTTTGATGATTCAGAAACCCTAAGAGCCTGGGAATTCCTTTGTACCCATATAATTCCAAGTACCCTCCACTGAGTGGCTTGTGGGCACTGGAGTGTCGACTTC-AAATGTGCGAAATTTTATTTCTACTGTAAATACAGGGGAGGTAGGAGCTTGGGCTGAATCTGTGGTAATTATGATGTGCCCTGGAACTTACTCATTGAAAAACAAAAACAAg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64749146 250 + 135191526 GCTTCCTTGCTAGCTCTGGATTAGATCCAAGTTCCACTTTGATGATTCAGAAACCCTAAGAGCCTGGGAATTCCTTTGT-CCCATATAATTCCAAGTACCCTCCACTGAGTGGCTTGTGGGCACTGGAGTGTCGACTTC-AAATGTGTGAAATGTTATTTCTACTGTAAATACAGGGGAGGTAGGAGCTTGGGCTGAATCTGTGGTAATTATGATGTGCCCTGGAACTTACTCATTGAAAAACAAAAACAAg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57789294 250 - 122973662 GCTTCCTTGCTACCTCTGGATTAGATCCAAGTTCCACTTTGATGATTCAGAAACCCTAAGAGCCTGGGAATTCCTTTGT-CCCATATAATTACAAGTACCCTCCACTGAGTGGCTTTTGGGCACTGGAGTGTCGACTTC-AAATGTGTGAAATTTTATTTCTACTGTAAATACAGGGGAGGTAGGAGCTTGGGCTGAATCTGTGGTAATTATGATGTGCCCTGGAACTTACTCATTGAAAAACAAAAACAAg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79722415 250 + 112192347 GCTTCTTTGCTAGCTCTGGATTAGATCCAAGTTCCACTTTGATGGTTCAGAAACCCTAAGAGCCTAGGAATTCCTTTGT-CCCATGTAATTCCAAGTACCCTCCACTGAGTGGCTCGTGGGCACTGGAGTGTCAGCTTC-AAATGTGTGAAATTTTATTTCTACTGTAAATACAAGGGAAGTAGGAGCTTGGGCTGAATCTGTGGTAATTATGATGTGCCCTGGAACTTACTCATTAAAAAACAAAACCAAg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80803248 250 + 112612857 GCTTCTTTGCTAGCTCTGGATTAGATCCAAGTTCCACTTTGATGGTTCAGAAACCCTAAGAGCCTAGGAATTCCTTTGT-CCCATGTAATTCCAAGTACCCTCCACTGAGTGGCTCGTGGGCACTGGAGTGTCAGCTTC-AAATGTGTGAAATTTTATTTCTACTGTAAATACAAGGGAAGTAGGAGCTTGGGCTGAATCTGTGGTAATTATGATGTGCCCTGGAACTTACTCATTAAAAAACAAAACCAAg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76852354 250 + 107442819 GCTTCTTTGCTAGCTCTGGATTAGATCCAAGTTCCACTTTGATGGTTCAGAAACCCTAAGAGCCTAGGAATTCCTTTGT-CCCATGTAATTCCAAGTACCCTCCACTGAGTGGCTCGTAGGCACTGGAGTGTCAGCTTC-AAAtgtgtgaaattttatttctactgtAAATACAAGGGAAGTAGGAGCTTGGGCTGAATCTGTGGTAATTATGATGTGCCCTGGAACTtactcattaaaaaacaaaaccaag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81115942 250 + 108555830 GCTTCCTTGCTAGCTCTAGATTAGATCCAAGTTCCACTTTGATGGTTCAGAAACCCTAAGAGCCTAGGAATTCCTTTGT-CCCATGTAATTCCAAGTACCCTCCACTGAGTGGCTCGTGGACACTGGAGTGTCAGCTTC-AAATGTGTGAAATTTTATTTCTACTATAAATACAAGGGAGGTAGGAGCTTGGGCTGAATCTGTGGTAATTATCATGTGCCCTGGAACTTACTCATTAAAAAACAAAAACAAg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111338762 249 - 210400635 ACTTCCTCACTAGCTCTGGATTAGATCCAAGTTCCACTTTGACAATTCAGACACCCCAAGAGCCTGTGGATTCCGTTGG-TCCATGTAATTCCAGGTGCCCTCTACCGAATGGCTCGTGGGCACTGGAGTGTCGACTTC-AAATGTGTGAAATTTCATTTCTACTGTAAATATA-GGGAGATAGAAGCTTGGGCTGAATCTGTGGTAATTAAGATGTGCCCTGGAATTTACTCATTAAAAAACAAAAACAAg i calJac3.chr1 C 0 C 0 s canFam3.chr1 35237180 248 - 122678785 GCAGCCTCACAAGTTACAAATTAGACCCAGTTCCAACTTCGACAATTCAGAAATGTCAAGAACGTCCAGAT--CTCAGA-CCCATGCAGCT-CAAGAGCCCTCCACCCAATGGATCAGTAACACTTGAGTGTCAACTTCAAAATATGTGAAATTTTATTCCTACTGTAAATGCAGAGGATATAGGAGATTGGGCTGAATCTGTGGGGCTTATGAGGCATCCTGGAATCTACTTCTTAAAAAACAAAAGCAAA i canFam3.chr1 C 0 C 0 e mm10.chr19 37996034 11 - 61431566 I a score=413595.000000 s hg38.chr9_GL383541v1_alt 30819 148 + 171286 gccaggcatagtagctcatccctgtaatcccagcattttgggaggctgaggtgggcgactatcaccttaaggccaggagttcaagaccactcctggagacttagcgagaccctgtctcttt-aaaaaaacaaaaCAACACA-AAAACAAG s panTro4.chr9 68596322 148 + 137840987 gccaggcatagtagctcatccctgtaatcccagcattttgggaggctgaggtgggcgactatcactttaaggccaggagttcaagaccactcctggagacttagcgagaccctgtctcttt-aaaaaaacaaaaCAACACA-AAAACAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64749396 149 + 135191526 gccaggcatagtagctcatccctgtaatcccagcattttgggaggctgagttgggggactatcactttgaggccaggagttcaagagcactcctggaaacttagcgagaccctgtctctttaaaaaaaaCCAAACAACACA-AAAACAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57789544 148 - 122973662 gccaggcatagtagctcatccctgtaatcccagcattttgggaggctgaggtgggggactatcactttaaggccaggagttcaagaccactcctggagacttagctagacgctgtctcttt-aaaaaaacaaaacaaCACA-AAAACAAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79722665 148 + 112192347 gccaggcatagtagctcatccctgtaatcctagtactttgggaggatgaggtggaggactgtcactctaagttcaggagttcaagaccactcctggagacttagcgagaccctgtctcttt-aaaaaaacaaaaCAACACA-AAAAAAAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80803498 149 + 112612857 gccaggcatagtagctcatccctgtaatcctagtactttgggaggatgaggtggaggactgtcactctaaggtcaggagttcaagaccactcctggagacttagcgagaccctgtctcttt-aaaaaaacaaaaCAACACACAAAAAAAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76852604 147 + 107442819 gccaggcatagtagctcatccctgtaatcctagtactttgggaggatgaggtggaggACTGTCActctaagatcaggagttcaagaccactcctGGAGActtagcgagaccctgtctcttt-aaaaaaacaaaacaacac--aaacaaag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81116192 149 + 108555830 gccaggcatagtagctcatccctgtaatcctagtactttgggaggatgaggtggaggactgtcactctaaggtcaggagttcaagaccattcctggagacttagcgagaccctgtctcttt-aaaaaaacaaaaCAACACAAAAAAAAAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111339011 139 - 210400635 gccaggcataggagctcatcattggaatcccagcactttgggaggctgaggtgg--tacgatcactttaaggccaggagttcaagaccactcctggagccttggtgagtccctaactcttt-aa-------aagcaaaaca-aaaacaag i calJac3.chr1 C 0 C 0 e mm10.chr19 37996034 11 - 61431566 I e canFam3.chr1 35237428 0 - 122678785 C a score=33391.000000 s hg38.chr9_GL383541v1_alt 30967 9 + 171286 TCTTTTATA s panTro4.chr9 68596470 9 + 137840987 TCTTTTATA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64749545 9 + 135191526 TCTTTTATA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57789692 9 - 122973662 TCTTTTATA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79722813 9 + 112192347 TCTTTTATA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80803647 9 + 112612857 TCTTTTATA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76852751 9 + 107442819 tCTTTTATA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81116341 9 + 108555830 TCTTTTATA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111339150 9 - 210400635 ccTTTTATA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35237428 9 - 122678785 CCTTTTAAA i canFam3.chr1 C 0 C 0 e mm10.chr19 37996034 11 - 61431566 I a score=1513874.000000 s hg38.chr9_GL383541v1_alt 30976 467 + 171286 AGCTGCAGGAGAATGTTTTAGGTCTATGGGAATGTTACTG-TATAATATATTCTATTTCTGTTATAGAAGTAGTTCCGAGTGAGAAGTACACAGTGAAACTTAATGAGATAGTTATGCAATAGCTTCCTATGCAGCCCAGGTCTGTGATCTATAG---Gtagcatttaatagtgcctgacaagcacatttactttcatcatctttaactttcacaacaatcttgaaggtggttattatcagt---------attttacagatgagaaactgtga--gacacagagagattaggataacgtgcccaaagcaactcagttggaga----gtgggagagtggggatgtcaagccaagctcacctggc---------ttgaacttcaagtggtccta-attcactTGGAGTTG-GATGATGCTTTTGTTATTCCAGAGGTCAACACCAAGGAAGTCAGACTTGCAAGTTGTACGCTTCTCTGCAGAAGGTGGGGAACCTCT s panTro4.chr9 68596479 467 + 137840987 AGCTGCAGGAGAATGTTTTAGGTCTATGGGAATGTTACTG-TATAATATATTCTGTTTCTGTTATAGAAGTAGTTCCCAGTGAGAAGTGCACAGTGAAACTTAATGAGATAGTCATGCAATAGCTTCCTATGCAGCCCAGGTCTGTGATCTATAG---GTAGCATTTAATAGTGCCTGACaagcacatatactttcatcatctttaactttcacaacaatcttgaaggtggttattatcagt---------attttacagatgagaaagtgtga--gacacagagagattaggataacgtgcccaaagcaactcagttggaga----gtgggagagtggggatatcaagccaagctcacctggc---------ttgaacttcacgtggtccta-attcactTGCAGTTG-GATGATGCTTTTGTTATTCCAGAGGTCAACACCAAGGAAGTCAGACTTGCAAGTTGTACGCTTCTCTGCAGAAGGTGGGGAACCTCT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64749554 467 + 135191526 AGCTGCAGGAGAATGTTTTAGGTCTATGGGAATGTTACTG-TATAATATATTCTATTTCTGTTATAGAAGTAGTTCCCAGTGAGAAGTGCACAGTGAAACTTAATGAGATAGTCATGCAGTAGCTTCCTATGCAGCCCGGGTCTGTGATCTATAG---GTagcatttaatagtgcctgacaagcacatttactttcatcatctttaactttcacaacattcttcaaggtggctattatcagt---------attttacagatgagaaagtgtga--gacacagagagattagtataacatgcccaaagcaactcagttggaga----gtgagagagtggggatatcaagccaagctcacctggc---------ttgaacttcatgtggtccta-attcactTGGAGTTG-GATGATGCTTTTGTTATTCCAGAGGTCAACACCAAGGAAGTCAGACTTGCAAGTTGTACGCTTCTCTGCAGAAGGTGGGGAACCTCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57789701 467 - 122973662 AGCTGCAGGAGAATGTTTTAGGTCTATGGGAATGTTACTG-TATAATATATTCTATTTCTGTTATAGAAGTAGTTCCCAGTGAGAAGTGCACAGTGAAACTTAATGAGATAGTCATGCAATAGCTTCCTATGCAGCCCGGGTCTGTGATCTATAG---GTAGCATTTAATAGTGCCTGACaagcacatttactttcatcatctttaactttcacaacaatcttgaaggtggttattatcagt---------attttacagatgagaaagtgtga--gacacagagagattaggataacgtgcccaaagcaactcagttggaga----gtgggagagtggggatatcaagccaagctcacctggc---------ttgaacttcacgtggtccta-attcactTGGAGTTG-GATGATGCTTTTGTTCTTCCAGAGGTCAACACCAAGGAAGTCAGACTTGCAAGTTTTACGGTTCTCTGCAGAAGGTGGGGAACCTCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79722822 459 + 112192347 AGCTGCAGGAGAATGTTTCAGTTCTATGCAAATATTACTG-TATAATATGTTCTATTTC-------AAAGTAGTTCCCAGTGAGACGTGCTCAGTGAAACTTAATGAGATAGTCATGCAATAGCTTCCTATGCAGCCCGGGTCTGTGATCTATAG---Ggagcatttaatagtgcctgccaagcagatttactttcatcatctttaactttcacaacaatcttgaaggtggttattatcagt---------attttacagatgagaaagtgtga--gacacagacagattaggataatgtgcccaaagcaactcagttggag-----gtgggagagtggggatatcaagccaaactcacctggc---------ttgaacttcatgtggtccta-attcactTGGAGTTG-GATGATGCCTTTGTTCTTCCAGAGGTCAACACCAAGAAAGTCAGACTTGCAACCCATATGCTTCTCTACAGAAGATGGGGAACCTCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80803656 459 + 112612857 AGCTGCAGGAGAATGTTTTAGTTCTATGCAAATATTACTG-TATAATATGTTCTATTTC-------AAAGTAGTTGCCAGTGAGACGTGCTCAGTGAAACTTAATGAGATAGTCATGCAATAGCTTCCTATGCAGCCCGGGTCTGTGATCTATGG---GGagcatttaatagtgcctgccaagcagatttactttcatcatctttaactttcacaacaatcttgaaggtggttattatcagt---------attttacagatgagaaagtgtga--gacacagacagattaggataatgtgcccaaagcaactcagttggag-----gtgggagagtggggatatcaagccaaactcacctggc---------ttgaacttcatgtggtccta-attcactTGGAGTTG-GATGATGCCTTTGTTCTTCCAGAGGTCAACACCAAGAAAGTCAGACTTGCAACCCATATGCTTCTCTACAGAAGATGGGGAACCTCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76852760 459 + 107442819 AGCTGCAGGAGAATGTTTTAGGTCTATGCAAATATTACTG-TATAATATATTCTATTTC-------AAAGTAGTTCCCAGTGAGAAGTGCTCAGTGAAACTTAATGAGATAGTCATGCAATAGCTTCCTATGCAGCCCGGGTCTGTGATCTATAG---GGAGCATTTAATAGTGCTTGCCAAGCAGATTTACTTTCATCATCTTTAACTTTCACAACAATCTTGAAGGTGTTTATTATcagt---------attttacagatgagaaagtgtGA--GACACAGACAGATTAGGATAATGTGCCCAAAGCAACTCAGTTGGAG-----GTGGGAGAGTGGGGATATCAAGCCAAACTCACCTGGC---------TTGAACTTCATGTGGTCCTA-ATTCACTTGGAGTTG-GATGATGCCTTTGTTCTTCCAGAGGTCAACACCAAGGAAGTCAGACTTGCAACACATATGCTTCTCTACAGAAGATGGGGAACCTCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81116350 457 + 108555830 AGCTGCAGGAGAATGTTTTAGGTCTATGCAAATATTACTG-TGTAATATATTCTATTTC-------AAAGTAGTTCCCAGTGAGAAGTGCTCAGTGAAACTTAATGAGATAGTCATGCAATAGCTTCCTATGCAGCCCGGGTCTGTGATCTATAG---Ggagcatttaatagtgcctgccaagcagatttacgttcat--tctctaactttcacaacaatcttaaaggtggttattatcagt---------attttacagatgagaaagtgtga--gacacagacagattaggataatgtgcccaaagtaactcagttggag-----gtgggagagtggggatatcaagccaaactcacttggc---------ttgaacttcatgtggtccta-attcactTGGAGTTG-GATGATCCCTTTGTTCTTCCAGAGGTCAACACCAAGGAAGTCAGACTTGCAACCCATATGCTTCTCTACAGAAGGTGGGGAACCTCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111339159 433 - 210400635 AGTTGCAGGGAGATGTTTTAAGTCTATGGGAATTTTAATG-CATAATGTATTCTATTTCTGTTATGGAACTAGTTCCCAGTGACAAGTGCGAAGTGAAACGTAATGAGATAGTCATGCAATAGCTTCCTATTCAGCCTGGG--TGTGAGCTATAG---GAAGCTTTTAATAGTGCCtgccaagcacatttac--tcatcatctttaactttcacaacaatcttgaagatggttattatcagt---------attttatagatgagaaagtgtga--gaaacagaaagatgaagataacatgcccaaagcaactcgga----------gagggagagtgggactctcaagcctagctcacctggc---------ttgagcttcatgtggtccta-aTTCATTTAGAATTG-GAAG------------------------ACATCAAGGAAGACAGACTTGCAAGGTATATGCTTCTCTAGAGAAGGTTGGAAACCTCT i calJac3.chr1 C 0 C 0 s mm10.chr19 37996045 379 - 61431566 AGATGCCAGGGGACAACTTGGGCCTAAGGGAACTCTAGTGACAGAAAATAGTCTAGTTC------------------CCGAGGGACGTGGAAAGGGAACCGT-ATGGCACAGTCACACAATGGTT------------AGGGTCTGTGACATAGAGCTAGCAGTACTGAATTGTGCCCAGTCAGCGCTGCTATTGCCCTTATCTCTGACCTTCACAACCAT----GGAGTG---------------------ATTTTACAGTAATTAAAATAAAACCAACACAGAGAG----TGTTGCCAGCCTCAAAG-------GCTGGAGCTTCTGTG---GAGTCTGGA-------CCACACCCCCCTAGT---------ATG------------------------------TAG-GATGGCACCTGTACACTTGCAGAGATCAGCACC-AGGAAGACGGATGGGCAGACTTTGTGCCAATCTAGTGAACATAGAGAGCCTGt i mm10.chr19 I 11 I 44 s canFam3.chr1 35237437 478 - 122678785 AGTGATAGGGGAAT-CTTTGGGTATCAGGGGATTTTAATGGCATCACGTATTCAACTTCTGTTGTAAGAGTGGTTCCCAGTGAGTAGTGTGGAGTGAAACCTAATGGGATAGTTACACAGTGGCTTTCCACGTAGCCCTGCTCTGTGATCTGCAG---GTAGCATTTCACGGCGCCtgccaagtacatttgttggccttatctctaacctctgcaataatcctg-gggtagttatgatccgttattaccacattttgcagatgagaaagaggga--ggaacagaaaaatgaaggtaacagacccagggcaacata------------gttagagagttaggatattgaccccagcccacctagctccaaagAGTTGAGCTTCACTTGGCCCTAGACTCCCTCCTAATGGTGGTGATGCCTTTGTACTTGCAGAGGTCAATGCCAAGGAGGACAGACCTTCAAGATGTATGCTTTTCTAGAGATAGTAGAAAACCTCT i canFam3.chr1 C 0 C 0 a score=101963.000000 s hg38.chr9_GL383541v1_alt 31443 32 + 171286 GCCTCCATCATCAGTGTTGATGATGTCCCAAC s panTro4.chr9 68596946 32 + 137840987 GCCTCCATCATCAGTGTTGATGATGTCCCAAC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64750021 32 + 135191526 GCCCCCATCATCAGTGTTGATGATGTCCCAAC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57790168 32 - 122973662 GCCCCCATCATCAGTGTTGATGATGTCCCAAC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79723281 32 + 112192347 GCCCCCATCATCAATGTTGATGATGTCCCAAC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80804115 32 + 112612857 GCCCCCATCATCAATGTTGATGATGTCCCAAC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76853219 32 + 107442819 GCCCCCATCATCAATGTTGATGATGTCCCAAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81116807 31 + 108555830 G-CCCCATCGTCAATGTTGATGATGTCCCAAC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111339592 32 - 210400635 GCCCACATCTTCAGTGTTGATGATGTCCCAAC i calJac3.chr1 C 0 C 0 s canFam3.chr1 35237915 24 - 122678785 ----GCA----AAATAGTGACAATGTCCCAAC i canFam3.chr1 C 0 C 0 e mm10.chr19 37996424 44 - 61431566 I a score=2473448.000000 s hg38.chr9_GL383541v1_alt 31475 628 + 171286 ATTACAACTCCTTCCCTGAGTTC-TAGGCCCCACCTACAACTAGTGTGTCTCCCGGGCAGTGGTGAGCCTTT-----GGA-------AGGCATCAAGTAGAGACAGAGAAATGTAGTT-------------------TTTACTAA-TTTCTTTTCCATAACAGATTAGAGTTTGCTCTTGGAACCATTTGAAGGATTCTCTTCTCAATCCTCAGCATAATCTTGGAAGAGAACTTCAGGGAAATTTTATAGCTTGACCTAAAATACTTTGGCAGTCTTAAGGAGTATTCCTAAACTTCAAGTTCATCTATTCCTACTGTGAAAGAATTAAAAGAGTACACAAATAAATGTGCTTTTGCAAGCTGGTTGCCCTTCTAGATA-AGAATTTTGGTACTTCTTCATTCTATTACTCTTAATAGAATGGCAATGTTTCTATACAGTCCTGTGATA---TATAACTTTGCTAGATGCTTAGAGAAATTTCCATTCCTTATTTGAAAAACTTTTGCCTCACTGCCAAGGAGAGCTGAAGTGTTATTTGGGGCTATGCTTATAAAGAGGATGACTTTAATATGCTTTTGCTTCAGTGAGGAGCTGACTCCTTCGTTTACC--------AATATTTTATGACCAAAACAATCT-ATCCAAAACTACAACTCAGGAAGTTTTCT----- s panTro4.chr9 68596978 628 + 137840987 ATTACAACTCCTTCCCTGAGTTC-TAGGCCCCACCTACAACTAGTGTGTCTCCTGGGCAGTGGTGAGCCTTT-----GGA-------AGGCATCAAGTAGAGACAGAGAAATGTAGTT-------------------TCTACTAA-TTTCTTTTCCATAACAGATTAGAGTTTGCTCTTGGAACCATTTGAAGGATTCTCTTCTCAATCCTCAGCATAATCTTGGAAGAGAACTTCAGGGAAATTTTATAGCTTGACCTAAAATACTTTGGCAGTCTTAAGGAGTATTCCTAAACTTCAAGTTCATCTATTCCTACTGTGAAAGAATTAAAAGAGTACACAAATAAATGTGCTTTTGCAAGCTGGTTGCCCTTCTAGATA-AGAATTTTGGTACTTCTTCATTCTATTACTCTTAATAGAATGGCAATGTTTCTATACAGTCCTGTGATA---TATAACTTTGCTAGATGCTTAGAGAAATTTCCATTCCTTATTTGAAAAACTTTTGCCTCACTGCCAAGGAGAGCTGAAGTGTTATTTGGGGCTATGCTTATAAAGAGGATGACTTTAATATGCTTTTACTTCAGTGAGGAGCTGACTCCTTCGTTTACC--------AATATTTTATGACCAAAACAATCT-ATCCAAAACTACAACTCAGGAAGTTTTCT----- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64750053 628 + 135191526 ATTACAGCTCCTTCCCTGAGTTC-TAGGCCCCACCTACAACTAGTGTGTCTCCCAGGCAGTGGTGAGCCTTT-----GGA-------AGGCATCAAGTAGAGACAGAGAAATGTAGTT-------------------TTTACTAA-TTTCTTTTCCATAACAGATTAGAGTTTGCTCTTGGAACCATTTGAAGGATTCTCTTCTCAGTCCTCTGCATAATCTTGGAAGAGAACTTCGGGGAAATTTTATAGCGTGACCTAAAATACTTTGGCAGTCTTAAGGAGTATTCCTAAACTTCAAGTTCATCTATTCCTACTGTGAAAGAGTTAAAAGAGTACACAAATAAATGTGCTTTTGCAAGCTGGTTGCCCTTCTAGATA-AGAATTTTGGTACTTCTTCATTCTATTACTCTTAATAGAATGGCAATGTTTCTATACAGTCCTGTGATA---TGTAACTTTGCTAGATGCTTAAAGAAATTTCCATTCCTTATTTGAGAAACTTTTGCCTCACTGCCAAGGAGAGCTGAAGTGTTATTTGGGGCTATGCTTATAAAGA-GATGACTTTAATATGCTTTTGCTTCAGTGAGGAGCTGACTCCTTCGTTTACC--------AATATTTTATGACCAAAACAATCTAATCCAAAACTACAACTCAGCAAGTTTTCT----- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57790200 629 - 122973662 ATTACAACTCCTTCCCTGAGTTC-TAGGCCCCAGCTACAACTAGTGTGTATCCCCGGCAGTGGTGAGCCTTT-----GGA-------AGGCATCAAGCAGAGATAGGGAAATGTAGTT-------------------TTTACTAA-TTGCTTTTCCATAACAGATTAGAGTTTGCTCTTGGAACCATTTGAAGGATTCTCTTCTCAATCCTCAGCATAATCTTGGAAGAGAACTTCAGGGAAATTTTACAGCTTGACCTAAAATACTTTGGCAGTCTTAAGGAGTATTCCTAAACTTCAAGTTCATCTATTCCTACTGTGAAAGAATTAAAAGAGTACACAAATAAATGTGCTTTTGCAAGCTGGTTGCCCTTATAGGTA-AGAATTTTGGTACTTCTTCATTCTATTACTCTTAACAGAATGGCAATATTTCTATACAGTCCTGTGATA---TGTAACTTTGCTAGATGCTTAGAGAAATTTCCATTCCTTATTTGAAAAACTTTTGCCTCACTGCCAAGGAGAGCTGAAGTGTTATTTGGGGCTATGCTTATAAAGAGGATGACTTTAAAATGCTTTTGCTTCAGTGAGTAGCTGACTCCTTCGTTTACC--------AATATTTTATGACCAAAACAATCTAATCCCAAACTACAACTCAGCAAGTTTTCT----- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79723313 629 + 112192347 ATTACAACTCCTTCCCTGAGTTC-TAGGCCCCAGCTACAACTAGTGCATCTCCCGGGCAGTGGTGAGCCTTT-----GTA-------AGACATCAAGTAGAGACAGGGAACTGTGGTT-------------------TTTACTAA-TTTCTTTTCCATAACAGATTAGAGTTTGCTCTTGGAACCATTTGAAGGATTCTCCTCTCAGTCCTCAGCATAATCTTGGAAGAGAACTTCAGGGAAATTTTATAGCTTGACCTAAAATACTTTGGCAGTCTTAAGGAGTATTCCTAAACTTTAAGTTCATCTATTCCTACTGTGAAAGAATTGAAAGAGTACAcaaataaatgtgcttttgcaagctggttgcccttctagaca-agaaTTTTGGTACTTCTTCATTCTATTACTCTTAACAGAATGGCAATGTTTCTATACAGTCCTGTGATA---TATAACTTTGCTAGACACTTAGAGAAATTTCCATTCCTTATTTGAAAAACTTTTGCCTCACTGCCAAGGAGAGCTGAAGTGTTATTTGGGGCTATGCTTATAAAGAGGATGACTTTAATATGCTTTTGCTTCGGTGAGGAGCTGACTCCTTCATTTACC--------AATATTTTATAACCAAAACAATCTAATCCAAAACTGTAACTCAGCAAGTTTTCT----- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80804147 629 + 112612857 ATTACAACTCCTTCCCTGAGTTC-TAGGCCCCAGCTACAACTAGTGCATCTCCCGGGCAGTGGTGAGCCTTT-----GTA-------AGACATCAAGTAGAGACAGGGAACTGTGGTT-------------------TTTACTAA-TTTCTTTTCCATAACAGATTAGAGTTTGCTCTTGGAACCATTTGAAGGATTCTCCTCTCAGTCCTCAGCATAATCTTGGAAGAGAACTTCAGGGAAATTTTATAGCTTGACCTAAAATACTTTGGCAGTCTTAAGGAGTATTCCTAAACTTTAAGTTCATCTATTCCTACTGTGAAAGAATTGAAAGAGTACACAAATAAATGTGCTTTTGCAAGCTGGTTGCCCTTCTAGACA-AGAATTTTGGTACTTCTTCATTCTATTACTCTTAACAGAATGGCAATGTTTCTATACAGTCCTGTGATA---TATAACTTTGCTAGACACTTAGAGAAATTTCCATTCCTTATTTGAAAAACTTTTGCCTCACTGCCAAGGAGAGCTGAAGTGTTATTTGGGGCTATGCTTATAAAGAGGATGACTTTAATATGCTTTTGCTTCGGTGAGGAGCTGACTCCTTCATTTACC--------AATATTTTATAACCAAAACAATCTAATCCAAAACTGTAACTCAGCAAGTTTTCT----- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76853251 629 + 107442819 ATTACAACTCCTTCCCTGAGTTC-TAGGCCCCAGCTACAACTAGTGCATCTCCCGGGCAGTGGTGAGCCTTT-----GTA-------AGGCATCAAGTAGAGACAGGGAAATGTGGTT-------------------TTTACTAA-TTTCTTTTCCATAACAGATTAGAGTTTGCTCTTGGAACCATTTGAAGGATTCTCCTCTCAGTCCTCAGCATAATCTTGGAAGAGAACTTCAGGGAAATTTTATAGCTTGACCTAAAATACTTTGGCAGTCTTAAGGAGTATTCCTAAACTTTAAGTTCATCTATTCCTACTGTGAAAGAATTGAAAGAGTACACAAATAAATGTGCTTTTGCAAGCTGGTTGCCCTTCTAGACA-AGAATTTTGGTACTTCTTCATTCTATTACTCTTAACAGAATGGCAATGTTTCTATACAGTCCTGTGATA---TATAACTTTGCTAGACACTTAGAGAAATTTCCATTCCTTATTTGAAAAACTTTTGCCTCACTGCCAAGGAGAGCTGAAGTGTTATTTGGGGCTATGCTTATAAAGAGGATGACTTTAATATGCTTTTGCTTCGGTGAGGAGCTGACTCCTTCATTTACC--------AATATTTTATAACCAAAACAATCTAATCCAAAACTATAACTCAGCAAGTTTTCT----- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81116838 629 + 108555830 ATTACAACTCCTTCCCTGAGTTC-TAGGCCCCAGCTACGACTAGTGCATCTCCCGGGCAGTGGTGAGCCTTT-----GTA-------AGGCATCAAGTAGAGACAGGGAAATGTAGTT-------------------TTTACTAA-TTTCTTTTCCATAACACATTAGAGTTTGCTCTTGGAACCATCTGAAGGATTCTCCTCTCAGTCCTCAGCATAATCTTGGAAGAGAACTTCAGGGAAATTTTATAGCTTGACCTAAAATACTTTGGCAGTCTTAAGGAGTATTCCTAAACTTCAAGTTCATCTATTCCTGCTGTGAAAGAATTGAAAGAGTAGGcaaataaatgtgcttttgcaagctggttgcccttctagaca-agaaTTTTGGTACTTCTTCATTCTATTACTCTTAACAGAATGGCAATGTTTCTATACAGTCCTGTGATA---TATAACTTTGCTAGACGCTTAGAGAAATTTCCATTCCTTATTTGAAAAAGTTTTGCCTCACTGCCAAGGAGAGCTGAAGTGTTATTTGGGGCTATGCTTATAAAGAGGATGACTTTAATATGCTTTTGCTTCAGTGAGGAGCTGACTCCTTCGTTTACC--------AATATTGTATGACCAAAACAATCTAATCCAAAACTATAACTCAGCAAGTTTTCT----- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111339624 632 - 210400635 ATTACAACTCCTTCCCTTAGTTC-TAGGCCCCAGCTACAAC-AGTGTATCTCCTGGGCAACGGTGAGCCTTT-----GGA-------AACCATCAGATAGAGACAGAGAAATGTCATT-------------------TTTACTAATTTTCTTCTCCATAACAGATTAGAGTTTCCTTTTGGAACTATTTGAAGAATTCTCTTCTCACTCCCCAGTATAATCATGGAAGAGAGCTTCAGGGAAATTTTACAGCTTGACCTAAAATACTTTCACAGTCTTAAAGAATATTCCTAAACTTCAAGTTCATTTATTCCTACTGTGAAAGAATTAAAAGAGTACACAAATACATGTGCTTTTGCAGGCTCGTTGCCCTTCTAGACA-AGTATTTGGGTACTTCTTTATTCTATTACTCTTATCAGAATGGTAATGTTTCTATACAGTCCTGTGATATATTATAACTTCGCTAGATGCTTAGAGAAGTTTCCATTCCTTATTTGAAAAACTTTTGCCTCACTGCCAAGGAGAGCTGAAGTGTTATTTGGGGCTGTGCTTATAATGAGGATGACTTTAATATGCTTTTGCTTCAGTGAGGAGCTGACTCCTTCGTTTACC--------AATATTTTATGACCAAAACCATCTAATCCAAAACTATAACTCAGGAAGTTTTCT----- i calJac3.chr1 C 0 C 0 s mm10.chr19 37996468 640 - 61431566 ATCCCAACT-CTGCCCGCAGTT------TCTCAGTTACAGCTAATGTGTGTACTGTGCAGTCACAAGCCCTTGGGAAGGA-------AGCCATCA-GCAGGAGGAGGCAAATGTACTCAGtgttttttgtttgtttgtttgtttt-tttgtttTCCATAACGGATTAAAGTTTGCTCTCAGAGCCATGTGGAGGATTCACTGCTGAGGCCTCAGCGTAATCTTGGAAGAAAACGCCAGGG-AACTTCACGGCCCAGCCTACCATACTTTGGCAGTTTTAAGGGATACCCCCGAACTTCAGTCTCATCGCATCTAACTGCAAAAGAATTGAAAGTACCCTCAGCTCAGTGTGC--TTGCAAGCTGGCTATCCTCCGAGACACACGGGGCCAGAGCTTATTC-------CACTCCTCGTAGATCGGCAATGCTGCTGTGCAGCAGGGTGATC---TATAACTTAGCAAGATGCTTAGAGAAATTTCCATGCCTTATTTGAAACTGTTCTGCCTTGCTGCCAAGGAGAGCTGAAGTGTTGTTTGGGGCTGTGCTTATGATGA-GATGACTTTAATACTCCGCGCACTTCCCAACAAGCCGTCCCGTGTGCTTGCCCGTGTCTTGGTGTTTTAGGATTGA----TTCTAATTTACTATTACAATCCAGGAGCTTTTCT----- i mm10.chr19 I 44 I 824 s canFam3.chr1 35237939 630 - 122678785 ------ATTCCAGCCCTGGGGGCGCAGGCCCCAGCTATATCTTGTGCACCTGCCATGCAGTGGTGAGCCTTT-----GGAATCAAGGAGGCATCAGGCGAAGATAGGAAAATGTGAT--------------------TTTACT---TCTTTTTTCCATAACAGATGAAAGTTTACTTTGGGAACCATTTTAAGGATTTTCTACTCAGTCCTCAGCGTAATCTTGGCAGAGAACTTCAGGAAAAATTTATAGCTTGACCTAAAATACTTTGGCCATCATAAGGAGTACTCCTAAACTTTGGATTCATCCATTCCTAGAGTGAGAA---TCAAATTGTACACAGATAAATGTGTTTTTGTAAGCCAGTTGCCCTGCTGGACA-AGCAGTTTGGTACGTATTTGCTCTGTTACTCGTAACAGAATCGCAGTGTTGCTCTATAGCAGTGCAACA---GAGAACTTAGCTCTATGCTTCGAAAAATTTCCATTCCTTATTTGAAAAACTTTTGCTTCACTGCCAAGCAGAAGTAAAGTGTTATTTGGGGCCATGCTTATAATGAAGATGACTTTAATATGCTTTAACTTCACCGAGAAGGTACCTTCTTTGCTTACT--------AATATTTTATGACTAAGATCCTCTTGTCTGAAACTATAACTTAAGCAGATTTCTTTTTT i canFam3.chr1 C 0 C 0 a score=945640.000000 s hg38.chr9_GL383541v1_alt 32103 265 + 171286 AAGTGTCTACAGATTTCTTCTATTTCTTTGACTTTATTAAAAGTGAATAATAGGGTAGACTGTTGGAGAATTTTCTCGTGAAGTATGTTTTGATCCTATATTAGCCAACTTTAAAGTATAAGCTTTATGGAAAGAAACTCTGGTTTTCCATTACAAATCCTGAAAATTGGCAACAGCCATCTGAAATCCCACTGTTGTTTCTAAAAATC-TTTTTTCTTTTTCATAAATTCTGGTGAGGAAAATGTGAGTTAAACTTTAGTATCTT s panTro4.chr9 68597606 265 + 137840987 AAGTGTCTACAGATTTCTTCTATTTCTTTGACTTTATTAAAAGTGAATAATAGGGTAGACTGTTGGAGAATTTTCTTTTGAAGTATGTTTTGATCCTATATTAGCCAACTTTAAAGTATAAGCTTTATGGAAAGAAACTCTGGTTTTCCATTACAAATCCTGAAAATTGGCAACAGCCATCTGAAATCCCACTGTTGTTTCTAAAAATC-TTTTTTCTTTTTCATAAATTCTGGTGAGGAAAATGTGAGTTAAACTTTAGTATCTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64750681 263 + 135191526 AAGTGTCTACAGATTTCTTCTATTTCTTTGACTTTATTAAAAGTGAATAATAGGGTAGACTGTTTGAGAATTTTCTTTTGAAGTATGTTTTGATCCTATATTAGCCAACTTTAAAGTATAAGCTTTATGGAAAGAAA--CTGGTTTTCCATTACAAATCCTGAAAATTGGCAACAGCCATCTGAAATCCCACTGTTGTTTCTAAAAATC-TTTTTTCTTTTTCATAAATTCTGGTGAGGAAAATGTGAGTTAAACTTTAGTATCTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57790829 265 - 122973662 AAGTGTCTGCAGATTTCTTCTATTTCTTTGACTTTATTAAAAGGGAATAATAGGGTAGACTGTTGGAGAATTTTCTTTTGAAGTATGTTTTGATCCTATATTAGCCAACTTTAAAGTATAAGCTTTATGGAAAGAAACTCTGGTTTTCCATTACAAATCCTGAAAATTGGCAACAGCCATCTGAAATCCCACTGTTGTTTCTAAAAATC-TTTTTTCTTTTTCATAAATTCTGGTGAGAAAAATGTGAGTTAATCTTTAATATCTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79723942 265 + 112192347 AAATGTCTACAGATTTCTTCTATTTCTGTGACTTTATTAAAAGTGAATAATAGGGTAGACTGTTGGAGAATTTTCTTTTGAAGTATATTTTGATCCTATATTAGCTAACTTTAAAGTACAAGCTCTATGGAAAGAAACTCTGGTTTTCCATTACAAATCCTGAAAATTGGCAACAGCCATCTGAAATCCCACTGTTGTTTCTAAAAATC-TTTTTTCTTTTTCATAAATTCTGATGAGGAAAATGTGAGTTAAACTTTAGTATCTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80804776 265 + 112612857 AAATGTCTACAGATTTCTTCTATTTCTGTGACTTTATTAAAAGTGAATAATAGGGTAGACTGTTGGAGAATTTTCTTTTGAAGTATATTTTGATCCTATATTAGCTAACTTTAAAGTATAAGCTCTATGGAAAGAAACTCTGGTTTTCCATTATAAATCCTGAAAATTGGCAACAGCCATCTGAAATCCCACTGTTGTTTCTAAAAATC-TTTTTTCTTTTTCATAAATTCTGATGAGGAAAATGTGAGTTAAACTTTAGTATCTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76853880 265 + 107442819 AAATGTCTACagatttcttctatttctgtgactTTATTAAAAGTGAATAATAGGGTAGACTGTTGGAGAATTTTCTTTTGAAGTATGTTTTGATCCTATATTAGCCAACTTTAAAGTATAAGCTCTATGGAAAGAAACTCTGGTTTTCCATTACAAATCCTGAAAATTGGCAACAGCCATCTGAAATCCCACTGTTGtttctaaaaatc-ttttttctttttcataaattctGATGAGGAAAATGTGAGTTAAACTTTAGTATCTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81117467 265 + 108555830 AAATGTCTACAGATTTCTTCTATTTCTGTGACTTTATTAAAAGTGAATAATAGGGTAGACTATTGGAGAATTTTCTTTTGAAGTATGTTTTGATCCTATATTAGCCAACTTTAAAGTATAAGCTTTATGGAAAGAAACTCTGGTTTTCCATTACAAATCCTGAAAATTGGCAACAGCCATCTGAAATCCCACTGTTGTTTCTAAAAATC-TTTTTTCTTTTTCATAAATTCTGGTGAGGAAAATGTGAGTTAAACTTTAGTATCTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111340256 266 - 210400635 GAGTGTCTACAAATTTCTTCTATTTCTGTGACTTTATTGAAAGTGAATAATAGGGTAGACTGTTGGAGAATTTTCTTTTGAAGTCTGTTTTGATCCTATATTAGCCAACTTTAAAGTATAAGCTTTATGGAAAGAAACTCTGGTTTTCCATTACAAATCCTGAAAACTGGCAAGAGGCATCTCAGATCACACTGTTGTTTCTAAAAATCTTTTTTTCTCTTTCACAAATTTTGATGAGGAACATGTGAGTTAAACTTTAGTATCTT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35238569 240 - 122678785 AAGGTTCTACAGGTTTCCCCTATATTTGTGGCTTTATTAAAAATGGATAATAGACCA--------GAGAATTTTCTTTCGAAGGGTGTTATGACCATGCATTAGTCCATTTTAAAATATAAGCTTCACAGAA--ACCCTTTGTTTTTCCATTACAAATCCTGA---------------ATTTGAAATCACACTGTTGTCCCTGAAGACG-GTTTCTCTTTTCCACAAATTCTGATGAGGACAATCTGAATTAAACATTATTGTCTT i canFam3.chr1 C 0 C 0 e mm10.chr19 37997108 824 - 61431566 I a score=43286.000000 s hg38.chr9_GL383541v1_alt 32368 13 + 171286 TGTTGTCAACTTA s panTro4.chr9 68597871 13 + 137840987 TGTTGTCAACTTA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64750944 13 + 135191526 TGTTGTCAACTTA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57791094 13 - 122973662 TATTGTCAACTTA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79724207 13 + 112192347 TGTTGTCAACTTA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80805041 13 + 112612857 TGTTGTCAACTTA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76854145 13 + 107442819 TGTTGTCAACTTA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81117732 13 + 108555830 TGTTGTCAACTTA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111340522 10 - 210400635 TGTTGTCAAC--- i calJac3.chr1 C 0 C 0 s mm10.chr19 37997932 13 - 61431566 TATTTTCATCTTG i mm10.chr19 I 824 C 0 s canFam3.chr1 35238809 13 - 122678785 TTTTCTTAATATA i canFam3.chr1 C 0 I 504 a score=588453.000000 s hg38.chr9_GL383541v1_alt 32381 158 + 171286 TGTTGTCAATATA--AAATATTTAAACTACTTATACATGGTTCTGTACTGAATATTGTATAATACAAGATAAGTGATGTTGGGGATAACACATCTGAAGATGCATTGTATTGGCACGCGGCGTGATTCATTTT-C--TCTTGGGCTTGTGGACTAGGACTTAT s panTro4.chr9 68597884 158 + 137840987 TGTTGTCAATATA--AAATATTTAAACTACTTATACATGGTTCTGTACTGAATATTGTATAATACAAGATAAGTGATGTTGGGGATAACACATCTGAAGATGCATTGTATTGGCACGTGGTGTGATTCATTTT-C--TCTTGGGCTTGTGGACTAGGACTTAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64750957 158 + 135191526 TGTTGTCAATATA--AAATATTTAAACTACTTATACATGGTTCTGTACTGAATATTGTATAATATAAGATAAGTGATGTTGGGGATAACACATCTGAAGATGCATTGTATTGGCACGAGGTGTGATTCATTTT-C--TCTTGGGCTTGTGGACTAGGACTTAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57791107 158 - 122973662 TGTTGTCAATATA--AAATAGTTAAACTACTTATACATGGTTCTGTACTGAATATTGTATAATACAAGATAAGTGATGTTGGGGACAACACATCTGAAAATGCATTGTATTGGCACGAGGTGTGATTCATTTT-C--TCTTGGGCTTGTGGACTAGGACTTAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79724220 158 + 112192347 TGTTGTCAATATA--AAATAGTTAAACTACTTATACATAGTTCTATACTGAATATTGCATAATACAGGATAAGTGATATTGGGGATAACACATCTGAAGATGCATTGTATTGGCACAAGGTGTGATTCATTTT-C--TCTTGGGCTTGTGGACTAGGACTTAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80805054 158 + 112612857 TGTTGTCAATATA--AAATAGTTAAACTACTTATACATAGTTCTATACTGAATATTGCATAATACAGGATAAGTGATATTGGGGATAACACATCTGAAGATGCATTGTATTGGCACAAGGTGTGATTCATTTT-C--TCTTGGGCTTGTGGACTAGGACTTAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76854158 158 + 107442819 TGTTGTCAATATA--AAATAGTTAAACTACTTATACATAGTTCTATACTGAATATTGCATAATACAGGATAAGTGATATTGGGGATAACACATCTGAAGATGCATTGTATTGGCACAAGGTGTGATTCATTTT-C--TCTTGGGCTTGTGGACTAGGACTTAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81117745 158 + 108555830 TGTTGTCAATATA--AAATAGTTAAACTACTTATACATGGTTCTACACTGAATATTGTGTAATACAAGATAAGTGATATTGGGGATAACACATCTGAAGATGCATTGTATTGGCACAAGGTGTGATTCATTTT-C--TCTTGGGCTTGTGGACTAGGACTTAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111340532 143 - 210400635 ----------ATA--AAATAGTTAAACTACTTGCACATGGTTCTGTACTGAATA-----TAATACAAAATGAGTGATGTTGGGGATAACATATCTAAGGATGCATTGTATTGGCACAAGATGTGATTCATTTT-C--TCTTGGGCCTGTGGACTAGGACTTAT i calJac3.chr1 C 0 C 0 s mm10.chr19 37997945 150 - 61431566 -GTTGTTGACATA--AACTATAGAACCTACCCATA-----GTCTGTCCTGAATACTGAATAGCACAGGAAAGATGAGGCTGGAGAT---GCAGCCGAAGAGGAACTGGACAGCCGTGCAGTATGACTCACTCCAA--ACTTGGGCTCATAAACAAGGGCTTAT i mm10.chr19 C 0 I 16 s canFam3.chr1 35239326 162 - 122678785 TGTTGTCAACATAAGAAGTCCACAAACTGCTTAGACATCGTTCTCTACTGAATGCTATATAATAAAAGAGAAATGATGTTGGAGATAACCTATTTAAAGATGTATAGTATTGACGTGAAGTATGATTCAGTTT-TAGTCTTGCGCTTGTGGACTAGGACTTCT i canFam3.chr1 I 504 C 0 a score=50457.000000 s hg38.chr9_GL383541v1_alt 32539 16 + 171286 AGTACTTGCTTTAAAG s panTro4.chr9 68598042 16 + 137840987 AGTACTTGCTTTAAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64751115 16 + 135191526 AGTACTTGCTTTAAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57791265 16 - 122973662 AGTACTTGCTTTAAAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79724378 16 + 112192347 AGTACTTGCTTTACAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80805212 16 + 112612857 AGTACTTGCTTTACAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76854316 16 + 107442819 AGTACTTGCTTTACAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81117903 16 + 108555830 TGTACTTGCTTTACAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111340675 16 - 210400635 ACTACTTGCTTTAAAG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35239488 15 - 122678785 -TTTCTTTCTATAAAG i canFam3.chr1 C 0 C 0 e mm10.chr19 37998095 16 - 61431566 I a score=763058.000000 s hg38.chr9_GL383541v1_alt 32555 281 + 171286 caggggtc---------------ccaacccccaggccacagatcggtaccggtctactagaagcccagccacacagcagga-ttgagcagcaggcaggcaagcgaggcttcatctgtatttacagccactccccatcacttgcattac----------------ctcctgagctccacctcctaccagatcagcagcggcattagattctcataggaatgggaaccctacgtaatttgcacatgtaaaggatctaggttgcgtgctccttatg------agaatctaatgcctgatgatctgtcactgcctcccatcgc s panTro4.chr9 68598058 281 + 137840987 caggggtc---------------ccaacccccaggccacagatcggtaccagtctactagaagcccagccacacagcagga-gtgagcagcaggcaggcaagcaaggcttcatctgtatttacagccactccccatcacttgcattac----------------ctcctgagcttcacctcctaccagatcagcagcggcattagattctcataggaatgggaaccctacgtaatttgaacatgtaaaggatctaggttgcgtgctccttatg------agaatctaatgcctgataatctgtcactgcctcccatcgc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64751131 282 + 135191526 caggggtc---------------ccaacccccaggccacagatcggtaccggtctactagaagcccagtcacacagcaggaggtgagcagcaggcaggcaagcgaggcttcatctgtgtttacagccactccccatcacttgcattac----------------ctcctgagctccacctcctaccagatcagcagcggtgttagattctcataggaaggggaaccctatgtaatttgcgcatgtaagggatctaggttgcatgctccttatg------agactctaatgcctgatgatctgtcactgcctcccatcgc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57791281 298 - 122973662 caggggtc---------------ccaacccccaggccacagatcggtaccagtctactagaagcccagccacacagcaggaggtgagcagcaggcaggcaagcgaggcttcatctgtatttacagccactccccatcacttgcattactgagcatccacttgcattactgagctccacctcctactagatcagcagcagcattagatgctcataggaatggggaccctacgtaatttgtgcatgtaagggatctaggttgcgtgctccttatg------agaatctaatgcctgatgatctgtcactgcctcccatcgc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79724394 294 + 112192347 CAGGGGGT-------CCCAACccccaacccccaggccacagatcagttccag-ataccaggagcccagccacacagcaggaggtgagcagtgggcaagcaagtgaggcttcatctgtatttgctgccactccccatcactcgcattac----------------ctcctgagctccacctcctaccagatcagcagcagcattagattctcataggaatgggaaccctaagtaaattgcgcaggtaagggatctaggttgc-tgctccttatgagaatcagaatctaatgcctggtgatctgtcactgcctcccatcac i rheMac3.chr15 C 0 I 335 s macFas5.chr15 80805228 301 + 112612857 CAGGGGGTcccaacccccaacccccaacccccaggccacagatcagttccag-ataccaggagcccagccacacagcaggaggtgagcagtgggcaagcaagtgaggcttcatctgtatttgcagccactccccatcacttgcattac----------------ctcctgagctccacctcctaccagatcagcagcggcattagattctcataggaatgggaaccctaagtaaattgcgcaggtaagggatctaggttgc-tgctccttatgagaatcagaatctaatgcctggtgatctgtcactgcctcccatcac i macFas5.chr15 C 0 I 348 s papAnu2.chr15 76854332 294 + 107442819 CAGGGGGt-------cccaacccccaacccccaggccacagatCAGTTCCAG-ATACCAGGAGCccagccacacagcaggaggtgagcagtgggcaagcaAGTGAGGCTTCATCTGTATttgcagccactccccatcactcgcattac----------------ctcctgagctccacctcctaccagatcagcagcggcattagattctcataggaatggGAACCCTAAGTAAATTGCGCAggtaagggatctaggttgc-tgctccttatgagaatcagaatctaatgcctggtgatctgtcactgcctcccatcac i papAnu2.chr15 C 0 I 351 s chlSab2.chr12 81117919 286 + 108555830 caggggtc---------------ccaacccccaggccacagatcagttccag-ataccaggagcccagccacacagcaggaggtgagcagcgggcaagcaagtgaggcttcatctgtatttgcatccactccccataactcgcattgc----------------ctcctgagctccacctcctaccagattagcagcggcattagattctcataggaatgggaaccctaagtaaattgcgcaggtaagggatctaggttgc-tgctacttacgagaatcagaatctaatgcctggtgatctgtcactgcctcccatcat i chlSab2.chr12 C 0 I 333 s calJac3.chr1 111340691 269 - 210400635 cagaagtc---------------ccaacctccaggtcatagacaggtaccagtctactagaaacccagccacacagcaggaggtgagcagctgacaagcaagcgaggcttcagctgtatttacagccactccctatcactcacattgc----------------cgcctgagctccacctcctacaagatcagcagtggca----gctctcataggagtgtgactgctacataaactg--catgcaag-------ggttgcatgctccttatg------agaatctaacacctgatgatctgtcagtgcctcccatcac i calJac3.chr1 C 0 C 0 e mm10.chr19 37998095 16 - 61431566 I e canFam3.chr1 35239503 0 - 122678785 C a score=710912.000000 s hg38.chr9_GL383541v1_alt 32836 234 + 171286 ccctagatgcaactttctagttgcag--aaaaacaagctcagggcacccactgattctacattatggtgaattgtataatcattacattatgtattgcaatgaataatagtagaaataaagtgcacaataaatgtaatgtggttgaatcatcctgaaagcatcttcccaccccctggtttgtgggaaaattgtctcccac-aaaccagtccctggtgccaaaaagtttggggactgt s panTro4.chr9 68598339 234 + 137840987 ccctagatgcaactttctagttgcag--aaaaacaagctcagggcacccactgattctacattatggtgaattgtataatcattacattatatattgcaatgaataatagtagaaataaagtgcacaataaatgtaatgtggttgaatcatcctgaaagcatcctcccaccccctggtttgtgggaaaattgtctcccac-aaaccagtccctggtgccaaaaagtttggggactgt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64751413 232 + 135191526 ccctagatgcaactttctagttgcag--aaaaacaggctcagggcacccactgattctacattatggtgaattgtataatcattacattatatattgcaatgaataataat--aaataaagtgcacaataaatgtaatgtggttgaatcatcctgaaagcatcctcccaccccctggtttgtgggaaaattttctcccac-aaaccagtccctggtgccaaaaagtttggggactgt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57791579 234 - 122973662 ccctagatgcaactttctagttgcag--aaaaacaagctcagggcacccactgattctacattatggtgaattgtataatcattatattatatattgcaatgaataataatcgaaataaagtgcacagtaaatgtaatgtgcttgaatcatcctaaaagcatcctcccaccccctggtttgtgggaaaattgtctcccac-aaaccagtccctggtgccaaaaagtttggggactgt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79725023 234 + 112192347 ccctagatgcaactttctagttgcag--gaaaacaagctcagggaacccactgattccacgttatggtgaattatataatcattacattatatattacaatgaataataatagaaataaagtgcacaataaatgtaatgtgcttgaatcattctgaaagcatcctcccaccccctggtttgtgggaaaattgtcttccac-aaaccagtccctggtgccaagaagtttggggactgt i rheMac3.chr15 I 335 C 0 s macFas5.chr15 80805877 234 + 112612857 ccctagatgcaactttctagttgcag--gaaaacaagctcagggaacccactgattccatgttatggtgaattatataatcattacattatatattacaatgaataataatagaaataaagtgcacaataaatgtaatgtgcttgaatcattctgaaagcatcctcccaccccctggtttgtgggaaaattgtcttccac-aaaccagtccctggtgccaagaagtttggggactgt i macFas5.chr15 I 348 C 0 s papAnu2.chr15 76854977 234 + 107442819 ccctagaTGCAACtttctagttgcag--gaaaacaagctcagggaaCCCACTGATTCCATGTTATGGTGAATTATATAatcattacattatatattacaatgaataataatagaaataaagtgcacaataaatgtaatgtgcttgaatcattcTGAAAGCATCCTCCCACCCCCTGGTTTGTGGgaaaattgttttccac-aaaccagtccctggtgccaagaaGTTTGGGGACTGT i papAnu2.chr15 I 351 C 0 s chlSab2.chr12 81118538 234 + 108555830 ccctagatgcaactttctagttgcag--gaaaacaagctcagggcacccactgattccatgttatggtgaattatataatcattaccttatatattacaatgaataataatagaaataaagtgcacaataaatgtaatgtgcttgaatcattctgaaagcatcctcccaccccctggcttgtgggaaaattgtcttccac-aaaccattccctggtgccaaaaagtttggggactgt i chlSab2.chr12 I 333 C 0 s calJac3.chr1 111340960 236 - 210400635 -cctagctgcaactttctagttgcagaaaaaaaaaagctcagggctcccactggttctacattatggtgaattgtataatcatttcactatatattggaatgaataataatggaaataaagtacacaataaatacaatgtgcttgagtcatcctgaaaccgtcctcccaccccctggtttgttgaaaaatcatcttccacaaaaccagtccctggtgccaaaaaggttggagactgt i calJac3.chr1 C 0 C 0 e mm10.chr19 37998095 16 - 61431566 I e canFam3.chr1 35239503 0 - 122678785 C a score=41391.000000 s hg38.chr9_GL383541v1_alt 33070 11 + 171286 tgCTTTAAAGA s panTro4.chr9 68598573 11 + 137840987 tgCTTTAAAGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64751645 11 + 135191526 tgCTTTAAAGA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57791813 11 - 122973662 tgCTTTAAAGA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79725257 11 + 112192347 tgCTTTAAAGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80806111 11 + 112612857 tgCTTTAAAGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76855211 11 + 107442819 TGCTTTAAAGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81118772 11 + 108555830 tgCTTTAAAGA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111341196 11 - 210400635 tgCTTTAAAGT i calJac3.chr1 C 0 C 0 s mm10.chr19 37998111 11 - 61431566 TGCTTTGCAGA i mm10.chr19 I 16 C 0 e canFam3.chr1 35239503 0 - 122678785 C a score=3105307.000000 s hg38.chr9_GL383541v1_alt 33081 854 + 171286 GTATTGAATTCAAAAGAAAATTCTGCTAACTGTTAGAAATCAATCCCAGGTTTTT--A---CACCATCCCCTATTAAAGAACATATCAATAATTACCAATGATGT-CTTAATTTCTGTCATGATCAAGTTTGATCCAAGTGGCCCTCTTGCCTATCAAGTACGCTATTATGCAGCTTTTGAGAGAGGATGAGGGTGACCTATGTGTGTAACAGCTTAAAGCAGACAGCTCAG-TTG-------------------CCTCAGAATATTCCT---------CAAGCTT-CTTGTCTCTCCACAAACTCAGCTACTCACAATAAAA-ACTGCTAGAAGATGAAA-AGGGTGCAAAATGGTTTATATTTTTAATTAACCCCTTTAATTTGTCAAGATGGTTATTAGGAAGTCATTCGTACTTTGGGGAGCATATTCCTGTCATAAAA--TAAGTTTGGACACATTTATGAGCGATCTCTTGCTGAGCACAATATTAGCCTAGTAGTCTAAGAATTCTTAGAAAATTAATTGGTCTTGGAGAAATAGATAA---TATTTGCCATTATTTCCATCCTAATGTGCAGTGAATCATAGTCATGCACAAAAGGCACCGGATTTTAGACTCAAG-TGATTTAAAGACTTTTCCTTGGAGACG-TTGACAAAGGAAAAAGCCTGGAGAGAGACCATCTGAGATT-T--CATTTCATTCTCC-TTTAAG--TTTCCATCACAAACCACCAGGTGTGCTGCAGAAGGACTTGCC-ATCCAGG---TGCCCTCAGCTGGGAGCTAAGGGTGATGCCTGGAATGTTTTATTTCAGTATTTGAA-AGTAGATACCTTGATAATCGTTTAAAAATTTTTATCCTTAGATTTCATTT--GAGTTGCTAAAAATAAG------------------------CTCAAAGACCAAAG s panTro4.chr9 68598584 851 + 137840987 GTATTGAATTCAAAAGAAAATTCTG----CTGTTAGAAATCAATCCCAGGTTTTTACA---CACCATCCCCTATTAAAGAACATATCAATAATTACCAATGATGT-CTTAATTTCTGTCATGATCAAATTTGATCCAAGTGGCCCTCTTGCCTATCAAGTACGCTATTATGCAGCTTTTGAGAGAGGATGAGGGTGACCTATGTGTGTAACAGCTTAAAGCAGACAGCTCAG-TTG-------------------CCTCAGAATATTCCT---------CAAGCTT-CTTGTCTCTCCACAAACTCAGCTGCTCACAATAAAA-ACTGCTAGAAGATGAAA-AGGGTGC-AAATGGTTTATATTTTTAATTAACCCCTTTAATTTGTCAAGATGGTTATTAGGAAGTCATTTGTACTTTGGGGAGCATATTCCTGTCATAAAA--TAAGTTTGGACACATTTATGAGCAATCTCTTGCTGAGCACAATATTAGCCTAGTAGTCTAAGAATTCTTAGAAAATTAATTGGTCTTGGAGAAATAGATGA---TATTTGCCATTATTTCCATCCTAATGTGCAGTGAATCACAGTCATGCACAAAAGGCACCGGATTTTAGACTCAAG-TGATTCAAAGACTTTTCCTTGGAGACG-TTGACAAAGGAAAAAGCATGGAGAGAGACCATCTGAGATT-T--CATTTCATTCTCC-TTTAAG--TTTCCATCACAAACCACCAGGTGTGCTGCAGAAGGACTTGCC-ATCCAGG---TACCCTCAGCTGGGAGCTAAGGGTGATGCCTGGCATGTTTTATTTCAGTATTTGAA-AGTAGATACCTTGATAATCATTTAAAAATTTTTATCCTTAGATTTCATTT--GAGTTGCTAAAAATAAG------------------------CTCAAAGACCAAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64751656 853 + 135191526 GTATTGAATTCAAAAGAAAATTCTGCTAACTGTTAGAAATCAATCCCAGGTTTTT--A---CACCATCCTCTATTAAAGAACATATCAATAATTACCAATGATAT-CTTAATTTCTGTCATGATCAAGTTTGATCCAAGTGGCCCTCTTGCCTATCAAGTACGCTATTATGCAGCTTTTGAGAGAGGATGAGGGTGACCTATGTGTGTAACAGCTGAAAGCAGACAGCTCAG-TTG-------------------CCTCAGAATATTCCT---------CAAGCCT-CTTGTCTCTCCACAAACTCAGCTACTCACAATAAAA-ACTGCTAGAAGGTGAAA-AGGGTGCAAAATGGTTTATATTTTTAATTAACCCCTTTAATTTGTCAAGCTGGTTATTAGGAAGTCATTTGTACTTTGGGGAGCATATTCCTGTCATAAAA--TAAGTTTGGACACATTTATGAGCGATCTCTTGCTGAGCACAATATTAGCCTAGTAGTCTAAG-ATTCTTAGAAAATTAATTGGTCTTGGAAAAATAGATAA---TATTTGCCGTTATTTCCATCCTAATGTGCAGTGAATCACAGTCATGCACAAAAGGCACCGGATTTTAGACTCAAG-TGATTTAAAGACTTTTCCTTGGAGACA-CTGACAGAGGAAAAAGCCTGGGGAGAGACCATCTGAGATT-T--CATTTCATTCTCC-TTTAAG--TTTCCATCACAAACCACCAGGTGTGCTGCAGAAGGACTTGCC-ATCCAGG---TACCCTCAGCTGGGAGCTAAGGGTGATGCCTGGCATGTTTTATTTCAGTATTTGAA-AGTAGATACCTTGATAATCATTTAAAAATTTTTATCCTTAGATTTCGTTT--GAGTTGCTAAAAATAAG------------------------CTCAAAGACCAAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57791824 854 - 122973662 GTATTGAATTCAAAAGAAAATTCTGCTAACTGTCAGAAATCAATCGCAGGTTTTT--A---CACCATCCCCTATTAAAGAACATATCAATAATTACCAATGATGT-CTTAATTTCTGTCATGATCAAGTTTGATCCAAGTAGCCCTCTTGCCTACCAAGTATGTTATTATGCAGCTTTTGAGAGAGGATGAGGGTGACCTGTGTGTGTAACAGCTGAAAGCAGACAGCTCAG-TTG-------------------CCTCAGAATATTCCT---------CAAGCCT-CTTGTCTCTCCACAAACTCAGCTACTCACAATAAAA-ACTGCTAGAAGATGAAA-AGGGTGCAAAATGGTTTATATTTTTAATTAACCTCTTTAATTTGTCAAGATGGTTATTAGGAAGTCATTTGTGCTTTGGGGACCATATTCCTGTCATAAAA--TAAGTTTGGACACATTTATGAGCAATCTCTTGCTGAGCACAATATTAGCCTAGTAGTCTAAGAATTCTTAGAAAATTAATTGGTCTTGGAAAAATAGATAA---TATTTGCCATTATTTCCCTCCTAATGTGCAGTGAATCACAGACATGCACAAAAGGCATGGGATTTTAGACTCAAG-TGATTTAAAGACTTTTCCTTGGAGACA-TTGACAAAGGAAAAAGCCTGGAGAGAGACCTTCTGAGATT-T--CATTTCATTCTCC-TTTAAG--TTTCCATCACAAACCACCAGGTGTGCTGCAGAAGGACTTGCC-ATCCTGG---TACCCTCAGCTGGGAGCTAAGGGTGATGCCTGGCATGTTTTATTTCAATATTTGAA-AGTAGATACCTTGATAATCATTTAAAAATTTTTATCCTTAGATTTCATTT--GAGTTGCTAAAAATAAG------------------------CTCAAAGACCAAAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79725268 850 + 112192347 GTATTGAATTCAAAAGAAAATTCTG----CTGTCAGAAATCAATCCCAGGTTTTT--A---CACCATCCCCTATTAAAGAACATATCAATAATTACCAACGATGT-CTTAGTTTCTGTCATGATCAAGTTTGATCCAAGTGGCCCTCTTGCCTATCAAGTATGCTATTACGCAGCTTTTGAGAGAGGATGAGGGTGACCTATGTGTGTAACAGCTGAAAGCAGACAGCCCAG-TTG-------------------CCTTAGAATATTCCT---------CAAGCCT-CTTGTCTCTCCACAAACTCAGCTACTCACAATAAAA-ACTGCTGGAAGACGAAA-AGGGTGCAAAATTGTTTATATTTTTAATTAACCCCTTTAATTTGTCAAGATGGTTATTAGGAAGTCATTTGTACTTTTGGAAGCATATTCCTGTCATAAAA--TAAGTTTGGACACATTTATGAGCGATCTCTTGCTGAGCACAATATTAGCCTAGTAGTCTAAGAATTCTTAGAAAATTAATTGGTCTTGGAAAAATAGATAA---TATTTGCCATTATTTCCATCCTAATGTGCAGTGTATCACAGTCATGCACAAAAGGCACAGGGTTTTAGACTCAAG-TGATTTAAAGACTTTTCCCTAGAGACA-TTGACAAAGGAAAAAGCCTGGAGAGAGACCATCTGAGATT-T--CGTTTCATTCTCC-TTTAAG--TTTCCATCACAAACCACCAGGTGTGCTGCAGAAGGACTTGCC-ATCCA-G---TACCCTCAGCTGGGAGCTAAGGATGATGCCTGGGATGTTTTATTTAAATATTTGAA-AGTGGATACCTTGATAATCATTTAAAAA-TTTTATCCTCAGATTTCATTTCAGAGTTGCTGAAAATAAG------------------------CTCAAAGACCAAAG i rheMac3.chr15 C 0 I 14 s macFas5.chr15 80806122 850 + 112612857 GTATTGAATTCAAAAGAAAATTCTG----CTGTCAGAAATCAATCCCAGGTTTTT--A---CACCATCCCCTATTAAAGAACATATCAATAATTACCAACGATGT-CTTAGTTTCTGTCATGATCAAGTTTGATCCAAGTGGCCCTCTTGCCTATCAAGTATGCTATTACGCAGCTTTTGAGAGAGGATGAGGGTGACCTATATGTGTAACAGCTGAAAGCAGACAGCCCAG-TTG-------------------CCTTAGAATATTCCT---------CAAGCCT-CTTGTCTCTCCACAAACTCAGCTACTCACAATAAAA-ACTGCTGGAAGACGAAA-AGGGTGCAAAATTGTTTATATTTTTAATTAACCCCTTTAATTTGTCAAGATGGTTATTAGGAAGTCATTTGTACTTTTGGAAGCATATTCCTGTCATTAAA--TAAGTTTGGACACATTTATGAGCGATCTCTTGCTGAGCACAATATTAGCCTAGTAGTCTAAGAATTCTTAGAAAATTAATTGGTCTTGGAAAAATAGATAA---TATTTGCCATTATTTCCATCCTAATGTGCAGTGTATCACAGTCATGCACAAAAGGCACAGGGTTTTAGACTCAAG-TGATTTAAAGACTTTTCCCTAGAGACA-TTGACAAAGGAAAAAGCCTAGAGAGAGACCATCTGAGATT-T--CGTTTCATTCTCC-TTTAAG--TTTCCATCACAAACCACCAGGTGTGCTGCAGAAGGACTTGCC-ATCCA-G---TACCCTCAGCTGGGATCTAAGGATGATGCCTGGGATGTTTTATTTAAATATTTGAA-AGTGGATACCTTGATAATCATTTAAAAA-TTTTATCCTCAGATTTCATTTCAGAGTTGCTGAAAATAAG------------------------CTCAAAGACCAAAG i macFas5.chr15 C 0 I 7 s papAnu2.chr15 76855222 847 + 107442819 GTAttgaattcaaaagaaaattcTG----CTGTCAGAAATCAATCCCAGGTTTTT--A---CACCATCCTCTATTAAagaacatatcaataattaccaACGATGT-CTTAGTTTCTGTCATGATCAAGTTTGATCCAAGTGGCCCTCTTGCCTATCAAGTATGCTATTACGCAGCTTTTGAGAGAGGATGAGGGTGACCTATATGTGTAACAGCTGAAAGCAGACAGCCCAG-TTG-------------------CCTTAGAATATTCCT---------CAAGCCT-CTTGTCTCTCCACAAACTCAGCTACTCACAATAAAA-ACTGCTAGAAGACGAAA-AGGGTgcaaaattgtttatatttttaattaacccCTTTAATTTGTCAAGATGGTTATTAGGAAGTCATTTGTACTTTTGGAAGCATATTCCTGTCATAAAA--TAAGTTTGGACACATTTATGAGCGATCTCTTGCTGAGCACAATATTAGCCTAGTAGTCTAAGAATTCTTAGAAAATTAATTGGTCTTGGAAAAATAG---A---TATTTGCCATTATTTCCATCCTAATGTGCAGTGTATCACAGTCATGCACAAAAGGCACAGGGTTTTAGACTCAAG-TGATTTAAAGACTTTTCCCTAGAGACA-TTGACAAAGGAAAAAGCCTGGAGAGAGACCATCTGAGATT-T--CGTTTCATTCTCC-TTTAAG--TTTCCATCACAAACCACCAGGTGTGCTGCAGAAGGACTTGCC-ATCCA-G---TACCCTCAGCTGGGAGCTAAGGATGATGCCTGggatgttttatttaaatatttgaa-agtggATACCttgataatcatttaaaaa-ttttatcctcAGATTTCATTTCAGAGTTGCTAAAAATAAG------------------------CTCAAAGACCAAAG i papAnu2.chr15 C 0 I 7 s chlSab2.chr12 81118783 851 + 108555830 GTATTGAATTCAAAAGAAAATTCTG----CTGTCAGAAATCAATCCCAGGTTTTT--A---CACCATCCCCTATTAAAGAACATATCAATAATTACCAACGATGT-CTTAGTTTCTGTCATGATCAAGTTTGATCCAAGTGGCCCTCTTGCCTATCAAGTATGCTATTATGCAGCTTTTGAGAGAGGATGAGGGTGACCTATGTGTGTAACAGCTGAAAGCAGACAGCCCAG-TTG-------------------CCTTAGAATATTCCT---------CAAGCCT-CTTGTCTCTCCACAAACTCAGCTACTCACAATAAAA-ACTGCTAGAAGATGAAA-AGGGTACAAAATGGTTTATATATTTAATTAACCCCTTTAATTTGTCAAGATGGTTATTAGGAAGTCATTTGTACTTTTGGAAGCATATTCCCGTCATAAAA--TAAGTTTGGACACATTTATGAGTGATCTCTTGCTGAGTACAATATTAGCCTAGGAGTCTAAGAATTCTTAGAAAATTAATTGGTCTTGGAAAAATAGATAA---TATTTGCCATTATTTCCATCCTAATGTGCAGTGTATCACAGTCATGCCCAAAAGGCACGGGGTTTTAGATTCAAG-TGATTTAAAGACTTTTCCCTAGAGACA-TTGACAAAGGAAAAAGCCTGGAGAGAGACCATCTGAGATT-T--CGTTTCATTCTCC-TTTAAG--TTTCCATCACAAACCACCAGGTGTGCTGCAGAACGACTTGCCAATCCA-G---TACCCTCAGCTGGGAGCTAAGGATGATGCCTGGGATGTTTTATTTAAATATTTGAA-AGTGGATACCTTGATAATCATTTAAAAA-TGTTATCCTCAGATTTCATTTCAGAGTTGCTAAAAATAAG------------------------CTCAAAGACCAAAG i chlSab2.chr12 C 0 I 14 s calJac3.chr1 111341207 843 - 210400635 ATATTGAATTCAAAAGAAAATTCTGCTAACTGTCAAAAGTCAATGCCAGGTTTTT--A---GACCATCCTCTATTAAAGGACATATCGATAATTACCAATCATGT-----ATTTCTGTT---ATCAAGTTTGATCCAAATGGCCCTCTTGCTTATCAAGTATGCTCTTATGCAGCTTTTGAGAGAGGATGAGGGTGATCTATTTGTGTAACAGCTGAAAGCAGACAGCTCAG-TTG-------------------CCTCCAAATATTCCT---------CAAGCCTCCTCTTCTCTCCACAAACTCAGCTACTTACAATAAAA-ACTGCTAGAAGATGAAA-AGGGTGCAAAATGGTTTATATTTTTAATTAACCCCTTTAATTTGTCACAGTGGTTATTAGGAAGTCATTTGTA-TTTGGGGATCATATTCCTGTCATAAAA--TAAGTTTGGACACATTTATGAGCGATCTCTTGCTGAATACAGTATTAGCCTACTCGTCTAAGAATTCTTAGAAAATTAATTCGTCTTGGAAAAATAG---A---TATTTGCC---ATTTCCATCCTAATGTGCAGTGAATTACAGTTATGCACAAAAGGCTTGGGATTTTAGACTTAAG-TGATTAAAGGACTTTTCCTTGGAGACA-TTGACAAAGGAAAAAGCCTGGAGAGTGAGCATCTGGGATT-C--AGTTTTATTCTCCTTTTAAG--TTTCCATCACCAACCACCAGGTGTGCTGCAGAAGGACTTGCC-ATCAAGG---TACCCTCAGCTGGGAGC-AAGGATGATGCCTTGGATGTTTTATTTAAATATTTGAA-AGTGAGTACCTTGATAATCACTTGAAAATTTTTATCCTTAGATTTTATTTCAGAGTTGCTAAAGATAAG------------------------CTCAGAGACCAAAG i calJac3.chr1 C 0 C 0 s mm10.chr19 37998122 756 - 61431566 GTGTTAATTTTAACAGGAAATTATGATAGCTTTAAAACATAAATCCCAAGTTTCT--G----ACCA-CTGCAATTAGAGACCATGTCAATAATTGCCAGGGATGTCCTTAACTTCTGTCATGCTCAAAT------------GCCCCTTCGTCTATCA---ATGCCGTTTAGCTGCATTTGGGAGAGGATGAAACCTGTATATTCATGTAAGGGCTGGGAGTGGGTGGCTCTGAATG-------------------TTTCCCATCACTCCTAAGAGCTCCCCAGCTC-CTTGTCTTTCCACAGAGGCAGCGACACATAATAAAATGCCACCAGAAGAGGAAA-CAGGACAAAACTAGTTTACATTTTTAATTAACCCCTCTCATTTGTCATTTTGGTTGTCAGGAAGCTATCTGTACTTTTGTGACTGTGTTCCTGCCATAAAA--TAAGTTTGGACACATTTACAAGCCATCAAGTGCTGAGCATAATATTGGCCTGATAACTGAACAAAATTaaacaaacaaac-----------aaacaaacaaacCTATCCTCCATTA-CTCCATTGCAA-GTGCAGTTAACAGCAGTTATGCCCAAGATAGTCTTAGTTCCAGACTCAGGACAATCTCAGAGCCTCTTCTTGGAGACATTTGATCGTTGAGTGAGGCTGGAGAGTGAGCAGTAGGAATCAG--AGGGTCAGGCTCC-ATTTGG--TCTCTG-------------------------------TTACC-A---------------------GGAAC-----------------ATGTTGTAGT---ATGTTCGCA-CGC-TACACTTTAA---------------GTTTGCCCTTACATCTCATTTCAGAGTTTCT--AAACAAA------------------------CTCTAAAGCCAAA- i mm10.chr19 C 0 C 0 s canFam3.chr1 35239503 885 - 122678785 GTGGTAAATTTAA-AGGAAACTCTGGCAGTTGTAGAGCATAAACCCCAGGCTTTT--AGAGCACCACCCCCATTTAAAGAGAATATCAATAATTACCAACAACGT-------------CATGTTCAGCTTTGAGCCAAGTGGCCCTCTTGTCTGTCAAGTACACAGTTAAGCATCTTTTGAGACAGGATGAAGGTGACCTCTTTGTGTAACAGCTGAGAGTAGACAGCACAG-TTGCTAAGAAAGTTTCTCTGTCCCTTTGAATATCCAT---------CAAGCCT-CT-GCCTTTCCTGAAGCTCAGCTACTTACTATAAAA-ATTGCTGGAAGATGGAACAGGGTGTAAAATGGTTTATATTTTTAATTGACTCCATTCATTTGTTGTTTTGGTTATCAGGAAGTCATTCATAATTCTGTGACTATGTCCCTGTCATAAAATTTAAGTTTGGACACATTTATGAGAGATCTCTTGCTGAGCATAATATGAGCCTAGGAGTCTAAGAATTCTTGGAAAATTAATGGGTCTTGGAAAAATAGACAA---TATCCACTGTCA-TTCTGTTGAAGTGTGCAGTGAATCATAGTCATGCAAAAAAGACACTGCATTTGAGCTTCAAA-TGATTTAGGAACTTTTCCTTGGAGACATTTGACAAAGGAAAAGG-CTGAAGAGTGAACTGCAAGGATT-CAGAGTTCCAATCTCC-TTTGAGTCTCTCCATCATCAGCTCCTGGGTGCATTCCAGAATGACTTGCC-ATCAAGGTACTACCCTTAGCTGGGAGC------------CTGCCACATTTTATTTAAATATTTGGAGAATGGACACCTCAGTGATCATATTTTAG-GATTATCCTTAGATCTCATTTCAGAATTGTTaaaaaaaaaacaaaaacaaaaacaaaaacaaaCCTGAAAGACCAAAG i canFam3.chr1 C 0 C 0 a score=9126.000000 s hg38.chr9_GL383541v1_alt 33935 7 + 171286 TGACATT s panTro4.chr9 68599435 7 + 137840987 TGACATT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64752509 7 + 135191526 TGACATT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57792678 7 - 122973662 TGACATT i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80806979 2 + 112612857 -----TT i macFas5.chr15 I 7 I 5 s papAnu2.chr15 76856076 2 + 107442819 -----TT i papAnu2.chr15 I 7 I 5 s calJac3.chr1 111342050 7 - 210400635 TGACATT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35240388 7 - 122678785 TGGTATT i canFam3.chr1 C 0 C 0 e mm10.chr19 37998878 0 - 61431566 C e chlSab2.chr12 81119634 14 + 108555830 I e rheMac3.chr15 79726118 14 + 112192347 I a score=4890463.000000 s hg38.chr9_GL383541v1_alt 33942 1379 + 171286 TGCAAGCATTTGTAGAGCACTGAGTGGGCATGTTGGCATTGAACTTGAAGATTC-AATAGGAATATGAATAATGACAATTATTTT-ATTGaacaattattgagca--------------------------------------attatca----ccaaacactgtgctgagtgcaggacatgcatcatcttatttaattcttataatccccctatgaagaaaatgt-tctttacagatgaagaaattgggatttagaa-------------ttttt-ttaacattcccaaaatcatagagcaagttattggtggagcctggattttaacctaggtttatctccgaagactaagaacataaccattctgctTTGTCACCTCTCTGTTTACATCCTCTCTTGACATGG-GGTCTCAAAGGGTCCTTGTGATAGAAATAATAATAGTTATAAAaatagataacccatat-ggagtggtttcttttgggtatatattgttctccgtgttttttattattaattagtttaac-------------cctcccaagggcctggtgagggtgggtcat-tttttatccccattttacggttgagacaggtgaggcagacagaag--------cctgcaggtcttcaagatcctaggcagcagggctatattttgt---a--acagatttcctggctccTGCCTGCCTTCTGTGAGGGATACAGCAATT------------GCAACGTTCATTT-------------------------------------------ATTTTCTGCTGCACTTTGAG-------GCAAGAAACTTTTCTACTTGAGTTCT--------GATGTGA---------------------------GTGACTAAGAGAAGC--ATGTAGAAACATTAGTTCTTCTAGGTTCTCCCATACACAGGGAGAATTGAATTCGTATTTGAGGAAATGAGTTCTAACTTGGGAAAATTTGAAATCCATCATTTTCTTTAG--------AAA-----------------TGGCACAGTGCCCTGGAACA--ACAAGAATTTTCTGCCTGGTTCCAAGTTCCAAATGAGATTAACTTGAGAACTCCTGTGAGAGTCTCACACTCAGAGGATCCCCACGACTGACCTACATTCTCTGGACAAATTCCAGTAGAA-CTATGTTTCTTGATCATCTTGATGGACTTGTTTTGAAAATGAGTGAAGTAT-CCTTATACAAAGA-----------------------AAAATGA-AAATGTAATATTTGCCTGCTTGGGTTTTGCAAAAAGGCATATGA-ACTCAAACGGGTAGCGAGGTGAAGCAGGAAACACC----ACAGAAGCCTGAGAAGAGGGAAAATCCTTCAACCGTGGGATAAAGGCAGAGGAGTGAGATCAGTCT-----TCTGTCTTTCCATCC----TGTAGTGGGCAATGTCTCTTGACCCATGGCATACGAGcatgcgtctctcatttaattcttac---aacccagtgacgaaggta------------ccccttacaaatgaagaaactagggtttagatagtttGTTTTAACATTTCCAAAGTTCATGCTATGGGACATGAACATGTGCATTAG-GAAGCCACAGGAG s panTro4.chr9 68599442 1379 + 137840987 TGCAAGCATTTGTAGAGCACTGAGTGGGCATGTTGGCATTGAACTTGAAGATTC-AATAGGAATATGAATAATGACAATTATTTT-ATTGaacaattattgagca--------------------------------------attatca----ccaaacactgtgctgagtgcaggacatgcatcatcttatttaattcttataatccccctatgaagaagatgt-tctttacagatgaagaaattgggatttagaa-------------ttttt-ttaacattcccaaagtcgtagagcaagttattggtggagcctggattttaacctaggtttatctccgaagactaagaacataaccattctgctTTGTCACCTCTCTGTTTACATCCTTTCTTGACATGG-GGTCTCAAAGGGTCCTTGTGATAGAAATAATAATAGTTATAAAaatagataacccatat-ggagtgatttcttttgggtatatattgttctccgtgttttatattattaattagtttaac-------------cctcccaagggcctggtgagggtgggtcgt-tttttatccccattttacggttgagacaggtgaggcagacagaag--------CCTGCAGGTCTTCAAGATCCAAGGCAGCAGGGCTATATTTTGT---A--ACAGATTTCCTGGCTCCTGCCTGCCTTCTGTGAGGGATACAGCAATT------------GCAACGTTCATTT-------------------------------------------ATTTTCTGCTGCACTTTGAG-------GTAAGAAACTTTTCTACTTGAGTTCT--------GATGTGA---------------------------GTGACTAAGAGAAGC--ATGTAGAAACATTAGTTCTTCTAGGTTCTCCCATACACAGGGAGAATTGAATTCGTCTTTGAGGAAATGAGTTCTAACTTGGGAAAATTTGAAATCCATCATTTTCTTTAG--------AAA-----------------TGGCACAGTGCCCTGGAACA--ACAAGAATTTTCTGCTTGGTTCCAAGTTCCAAATGAGATTAACTTGAGAACTCCTGTGAGAGTCTCACACTCAGAGGATCCCCACGACTGACCTACATTCTCTGGACAAATTCCAGTAGAA-CTATGTTTCTTGATCATCTTGATGGACTTGTTTTGAAAATGAGTGAAGTAT-CCTTATACAAAGA-----------------------AAAATGA-AAATGTAATATTTGCCTGCTTGGGTTATGCAAAAAGGCATATGA-ACTCAAACGGGTAGCGAGGTGAAGCAGGAAACACC----ACAGAAGCCTGAGAAGAGGGAAAATCCTTCAACCGTGGGATAAAGGCAGAGGAGTGAGATCAGTCT-----TCTGTCTTTCCATCC----TGTAGTGGGCAATGTCTCTTGACCCATGGCATACGAGcatgcgtctctcatttaattcttac---aacccagtgaggaaggta------------ccccttacaaatgaagaaactagggtttagatagtttGTTTTAACATTTCCAAAGTTCATGCTATGGGACATGAACATGTGCATTAG-GAAGCCACAGGAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64752516 1391 + 135191526 TGCAAGCATTTATAGAGCACTGAGTGGGCATGTTGGCATTGAACTTGAAGATTC-AATAGGAATATGAATCATGACAATTATTTT-ATTGaacagttattgagca--------------------------------------attatca----ccaaacactgtgctgagtgcaggacatgcatcatctcatttaattcttataatccccccatgaagaagatgc-tctttacagatgaagaaattgggatttagaa-------------ttttt-ttaacattcccaaagtcatagagcgagttattggtggagcctggattttaacctaggtttatctccgaagactaagaacataaccattctgctTTTCCACCTCTCTGTTTACATCCTCTCTTGACATGG-GGCCTCAAAGGGTCCTTGTGATAGAAATAATAATAGTTATAAAAGTAGATAACCCATAT-GGAGTGATTTCATTTGGGTATATattgttctcagtgttttatattattaattagtttaac-------------cctctcaagggcttggtgagggtgggtcct-tttttatccccattttatggttgagacaggtgaggcagacagaag--------cctgcaggtcttcaagatcctaggcagcagggctatattttgt---a--acagatttcctggctccTGCCTGCCTTCTGTGAGGGATACAGCAATT------------GCAACATTCATTT-------------------------------------------ATTTTCTGCTGCACTTTGAG-------GCAAGAAACTTTTCTGCTTGGGTTCT--------GATGTGA---------------------------GTGACTAAGAGAAGC--ATGTAAAAACATTAGTTCTCCTAGCTTCTCCCATACACAGGGAGAATTGAATTTGTATTTAAGGAAATGAATTCTAACTTGGGAAAATTTGAAATCCATCATTTTCTTTAG--------AAA-----------------TGGCACAGGGCCCTGGAACA--ACAAGAATTTTCTGCTTGGTTCCAAGTTCCAAATGAGATTAACTTGAGAACTCCTATGAGAGTCTCACACTCAGAGGATCCCCATGACTGACCTACATTCTCTGGACAAATTCCAGTAGAA-CTGTGTTTCTTGATCATCTTGATGGGCTTGTTTTGAAAATGAGTGAAGTAT-CCTTATACAAAGA-----------------------AAAATGA-AAATATAATATTTGCCTGCTTGGGTTATGCAAAAAGGCATATGA-ACTCAAATGGGTAGGGAGGTGAAGTAGGAAACACC----ACAGAAGCCTGAGAAGAGGGAAAATCCTTCAACCATGGGATAAAGGCAGAGGGGTGAGATCAGTCT-----TCTGTCTTTCCATCC----TGTAGTGGGCAATGTCTCTTGACCCATGGCATACGAGcatgcgtctctcatttagttcttac---aacccagtgaggaaggcaaagaaacccagtttctttacagatgaagaaactagggtttagatagtttGTTTTAACATTTCCAGAGTTCATTCTATGGGACATGAACATGTGCATTAG-GAAGCCATAGGAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57792685 1379 - 122973662 TGCAAGCATTTACAGAGCACTGAGTGGGCATGTTGGCATTGAACTTGAAGATTC-AATAGGAATATGAATAATGACAATTATTTT-ATTGaacaattattgagca--------------------------------------attatca----ccaaacaccgtgctgagtgcatgacatgcatcatctcacttaattcttataatccccccatgaagaagatgc-tctttacagatgaagaaattgggatttagaa-------------tttttcttaacattcccaaagtcatagagcaagtcattggtggagcctggattgtaacctaggtttatctccgaagactaagaacataaccattctgctTTGCCACCTCTTTGATTACATCCTCTCTTGACATGG-GGTCTCAAAGCGTCCTTATGATAGAAATAATAATAGTTATAAAaatagataacccatat-ggagtgatttcttttgggtatatattgttctcagtattttatattattaattagtttaac-------------tgtcccaagggcctggtgagggtgggtcct-tttttatccccattttatggttgagacaggtgaggcagacagaag--------cgtgcaggtcttcaagatcctaggcagcagggctatattttgt---a--acagatttcctggcttctgcctgccttctttGAGGGATACAGCAATT------------GCAACATTCATTT-------------------------------------------ATTTTCTGCTGCACTTTGAG-------GCAAGAAACTTTTCTACTTGAGTTCT--------GATGTGA---------------------------GTGACTAAGAGAAGC--ATGTAAAAACATTAGTTCTCCTAGATTCTTCCATACACAGGGAGAATTGAATTTGTATTTGAGGAAATGAATTCTAACTTGGGAAAATTTGAAATCCATCATTTTCTTTAG--------AAA-----------------TGGCACAGGGCCCTGGAACA--ACAAGAGTTTTCTGCTTGGTTCCAAGTTCCAAATGAGATTAACTTGAGAACTCCTATGAGAGTCTCACACTCAGAGGATCCCCATGACTGACCTACATTCTCTGGACAAATTCCAGTAGAA-CTATGTTTCTTGATCATCTTGATGGGCTTGTTTTGAAAATGAGTGAAGTAT-CCTTACACAAAG------------------------AAAATGA-AAATGTAATATTTGCCTGCTTGGGTTATGCAAAAAGGCATATGA-ACTCAAACGGGTAGGGAGGTGAAGCAGGAAACACC----ACAGAAGCCTGAGAAGAGGGAAAATCCTTCAGCCGTGGGATAAAGGCAGAGGGGTGAGATCAGTCT-----TCTGTCTTTCCATCC----TGTAGTGGGCAATGTCTCTTGACCCATGGCATACGAGcatgcatctctcatttaattcttac---aacccagtgaggaaggta------------ctctttacagatgaagaaactagggtttagatagtttGTTTTAACATTTCCAAAGTTCATTCTATGGGACATGAACATGTGCATTAG-GAAGCCATAGGAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79726132 1386 + 112192347 TGCAAGCATTTATAGGGCACTGCGTAGGCATGTTGGTATTGAACTTGAAGATTC-AATAGGAATATGAATAATGACAATTATTTT-ATTGaacaattattgagca--------------------------------------attatca----ccaaacactgtgctaagtgcatgatatgcatcatctcatttaattcttataatcccccaatgaagaagatgc-tcttcacagatgaagaaattgggatttagaa-------------ttttt-ttaacattcccaaagtcatagagcaagttattggtggagcctggaatttaacctaggtttatgtctgaagactgagaacataaccattctgctTTGTCGCCTCTCTGTTTACATCCTGTCTTGACATGG-GGTCTCAAAGCGTCCTTGTGATAGAAATAATAATAGTTATAAAAGTAG-------Atat-ggagtgatttcttttgggtatatattattctcagtgttttatattattaattagtttaatgaataatatatcacctcccaagggcctggtgagggtgggtcctatttttatacccattttatggttgagacaggtgagacagactgaag--------cctgcaggtcttcaagatcctaggcagcatggctatattttgt---a--acagataccctggctccTGCCTGCTTTCTGTGAGGGATACAGCAATT------------TCAACATTCATTT-------------------------------------------CTTTTCTGCTGCACTTTGAG-------GCAAGAAACTTTTCTACTTGAGTTCT--------GATGTGA---------------------------GTGACTAACAGAAGC--ATGTAAAAACATTAGTTCTCCTAGATTCTCCCATACACAGGGAGAATTGAATTTGTATTTGAGGAAATGAATTCTAACTTGGGAAAATTTGAAATCCATCATTTTCTTTAG--------AAA-----------------TGGCACAGGGCCCTGGAACA--ACAAGAATTTTCTGCTTGGTTCCAAGTTCCAAATGAGATTAACTTGAGAACTCCTATGAGAGCCTCACACTCAGAGGATCCCCACGACTGCCCTATGTTCTCTGGACAAATTCCAGTAGAA-CTATGTTTCTTGATCATCTTGATGGGCTTGTTTTGAAAATGAGTGAAGTAT-CCTTATACAAAGA-----------------------AAAATGA-AAATGTAATATTTGCCTGCTTGGGTTATGCAAAAAGTCGTATGA-ACTCAAACAGATAGGGATGTGAAGCGGGAAACACC----ACAGAAGCCTGAGAACAGGGAAAATCCTTCAACCGTGGGATAAAGGCAGAGAGGTGAGATCAGTCT-----TCTGTCTTTCCATCC----TGTAGTGGGCAACGTCTTTTGACCCCTGGCACACGAGcatgtgtctctcatttaattcttac---aacccagtgaggaaggta------------ctctttacagatgaagaaactagggtttagagagtttgttttaacatttccaaagtTCATTCTATGGGACATGAACATGTGCATTAG-GAAGCCATAGGAG i rheMac3.chr15 I 14 C 0 s macFas5.chr15 80806986 1386 + 112612857 TGCAAGCATTTATAGGGCACTGTGTAGGCATGTTGGCATTGAACTTGAAGATTC-AATAGGAATATGAATAATGACAATTATTTT-ATTGAAcaattattgagca--------------------------------------attatca----ccaaacactgtgctaagtgcatgatatgcatcatctcatttaattcttataatcccccaatgaagaagatgc-tcttcacagatgaagaaattgggatttagaa-------------ttttt-ttaacattcccaaagtcatagagcaagttattggtggagcctggaatttaacctaggtttatgtctgaAGACTGAGAACATAAGCATTCTGCTTTGTCGCCTCTCTGTTTACATCCTGTCTTGACATGG-GGTCTCAAAGCGTCCTTGTGATAGAAATAATAATAGTTATAAAAATAG-------Atat-ggagtgatttcttttgggtatatattattctcagtgttttatattattaattagtttaattaataatatatcacctcccaagggcctggtgagggtgggtcctatttttatacccattttatggttgagacaggtgagacaGACTGAAG--------CCTGCAGGTCTTCAAGATCCTAGGCAGCATGGCTATATTTTGT---A--ACAGATACCCTGGCTCCTGCCTGCTTTCTGTGAGGGATACAGCAATT------------TCAACATTCATTT-------------------------------------------CTTTTCTGCTGCACTTTGAG-------GCAAGAAACTTTTCTACTTGAGTTCT--------GATGTGA---------------------------GTGACTAACAGAAGC--ATGTAAAAACATTAGTTCTCCTAGATTCTCCCATACACAGGGAGAATTGAATTTGTATTTGAGGAAATGAATTCTAACTTGGGAAAATTTGAAATCCATCATTTTCTTTAG--------AAA-----------------TGGCACAGGGCCCTGGAACA--ACAAGAATTTTCTGCTTGGTTCCAAGTTCCAAATGAGATTAACTTGAGAACTCCTGTGAGAGCCTCACACTCAGAGGATCCCCACGACTGCCCTACATTCTCTGGACAAATTCCAGTAGAA-CTATGTTTCTTGATCATCTTGATGGGCTTGTTTTGAAAATGAGTGAAGTAT-CCTTATACAAAGA-----------------------AAAATGA-AAATGTAATATTTGCCTGCTTGGGTTATGCAAAAAGTCGTATGA-ACTCAAACAGATAGGGATGTGAAGCGGGAAACACC----ACAGAAGCCTGAGAACAGGGAAAATCCTTCAACCGTGGGATAAAGGCAGAGAGGTGAGATCAGTCT-----TCTGTCTTTCCATCC----TGTAGTGGGCAACGTCTTTTGACCCCTGGCACACGAGcatgtgtctctcatttaattcttac---aacccagtgaggaaggta------------ctctttacagatgaagaaactagggtttagagagtttGTTTTAACATTTCCAAAGTTCATTCTATGGGACGTGAACATGTGCATTAG-GAAGCCATAGGAG i macFas5.chr15 I 5 C 0 s papAnu2.chr15 76856083 1386 + 107442819 TGCAAGCATTTATAGGGCACTGCTTAGGCATGTTGGCATTGAACTTGAAGATTC-AATAGGAATATGAATAATGACAATTATTTT-ATTGAACAATTATTGAGCA--------------------------------------TTTATCA----ccaaacactgtgctaagtgcatGATATGCATCATCTCGTTTAATTCTTATAATCCCCCAATGAAGAAGATGc-tcttcacagatgaagaaattgggatttagaa-------------ttttt-ttaacattCCCAAAGTCATAGAGCAAGTTATTGGTGGAGCCTGGAATTTAACCTAGGTTTATGTCTGAAGACTGAGAACATAACCATTCTGCTTTGTCGCCTCTCTGTTTACATCCTGTCTTGACATGG-GGTCTCAAAGCGTCCTTgtgatagaaataataatagttataaaaatag-------atat-ggagtgatttcttttggttatatgTTATTCTCagtgttttatattattaattagtTTAATTAATAATATATCACCTCCCAAGGGCCTGGTGAGGGTGGGTcctatttttatacccattttatGGTTGAGACCGGTGAGACAGACTGAAG--------CCTGCAGGTCTTCAAGATCCTAGGCAGCATGGCTATATATTGT---A--ACAGATATCCTGGCTCCTGCCTGCTTTCTGTGAGGGATACAGCAATT------------Tcaacattcattt-------------------------------------------cttttctgctgcACTTTGAG-------GCAAGAAACTTTTCTACTTGAGTTCT--------GATGTGA---------------------------GTGACTAACAGAAGC--ATGTAAAAACATTAGTTCTCCTAGATTCTCCCATACACAGGGAGAATTGAATTTGTATTTGAGGAAATGAATTCTAACTTGGGAAAATTTGAAATCCAtcattttctttag--------aaa-----------------tggCACAGGGCCCTGGAACA--ACAAGAATTTTCTGCTTGGTTCCAAGTTCCAAATGAGATTAACTTGAGAACTCCTATGAGAGCCTCACACTCAGAGGATCCCCACGACTGCCCTACATTCTCTGGACAAATTCCAGTAGAA-CTATGTTTCTTGATCATCTTGATGGGCTTGTTTTGAAAATGAGTGAAGTAT-Ccttatacaaaga-----------------------aaaatga-aaatgtaatatttgcCTGCTTGGGTTATGCAAAAAGTCGTATGA-ACTCAAACAGATAGGGATGTGAAGCGGGAAACACC----ACAGAAGCCTGGGAACAGGGAAAATCCTTCAACCGTGGGATAAAGGCAGAGGGGTGAGATCAGTCT-----TCTGTCTTTCCATCC----TGTAGTGGGCAACGTCTTTTGACCCCTGGCACACGAGCATCCgtctctcatttaattcttac---aacccAGTGAGGAAGGTa------------ctctttacagatgaagaaactagggTTTAGAGAGTTTGTTTTAACATTTCCAAAGTTCATTCTATGGGATGTGAACATGTGCATTAG-GAAGCCATAGGAG i papAnu2.chr15 I 5 C 0 s chlSab2.chr12 81119648 1377 + 108555830 TGCAAGCATTTATAGGGCACTGCGTAGGCATGTTGGCATTGAACTTGAAGATTC-AACAGGAATATGAATAATGACAACTATTTC-ATTGaacaattattgagca--------------------------------------attatca----ccaaacactgtgctaagtgcatgatatgcatcatctcatttaattcttataatcccccaatgaagaagatgc-tcttcacagatgaagaaattgggatttagaa-------------ttttt-ttaacattcccaaagtcatagagcaagttattggtggagcctggaatttaacctaggtttatgtctgaagactgagaacataaccattctgctTTGTCGCCTCTCTGTTTACATCCTGTCTTGACATGG-GGTCTCAAAGCGTCCTTGTGATAGAAATAATAATAGTTATAAAAATAGATAACCCATAT-GGAGTGATTTCTTTTGGGTATATATTATTCTCAGTGTTTTATATTATTAATTAGTTTAATTAATAATATATCACCTCCCAAGGGCCTGGTGAGGGTGGGTCCTAT-----------TTTTATGGTTGAGACCGGTGAGACAGATTGAAG--------CCTGCAGGTCTTCAAGATCCTAGGTAGCATGGCTATATTTTGT---A--ACAGATATCCTGGCTCCTGCCTGCCTTCTGTGAGGGATACAGCAATT------------TCAACATTCATTT-------------------------------------------CTTTTCTGCTGCACTTTGAG-------GCAAGAAACTTTTCTACTTGAGTTCT--------GATGTGA---------------------------GTGACTAACAGAAGC--ATGTAAAAACATTAGTTCTCCTAGATTCTCCCATACACAGTGAGAATTGAATTTGTATTTGAGGAAATGAATTCTAACTTGGGAAAATTTGAAATCCATCATTTTCTTTAG--------AAA-----------------TGGCACAGGGCCCTGGAACA--ACAAGAATTTTCTGCTTGGTTCCAAGTTCCAAATGAGATTAACTTGAGAACTCCTATGAGAGCCTCACACTCAGAGGATCCCCACGACTGCCCTACATTCTCTGGACAAATTCCAGTAGAA-CTATGTTTCTTGATCATCTTGATGGACTTGTTTTGAAAATGAGTGAAGTAT-CCTTATACAAAGA-----------------------AAAATGA-AAATGTAATATTTGCCTCCTTGGGTTATGCAAAAAGGCATATGA-ACTCAAACAGATAGGGATGTGAAGCGGGAAACACC----ACAGAAGCCTGAGAACAGGGAAAATCCTTCAACCGTGGGATCAAGGCAGAGGGGTGAGATCAGTCT-----TCTGTCTTTCCATCC----TGTAGTGGGCAACGTCTTTTGACCCATGGCACATGAGCATAAGTCtctcatttaattcttac---aacccagtgaggaaggta------------ctctttacagatgaagaaactagggtttagagag-----tttaacatttccaaagtTCATTCTATGGGATGTGAACATGTGCATTAG-GAAGCCATAGGAG i chlSab2.chr12 I 14 C 0 s calJac3.chr1 111342057 1362 - 210400635 TGCAGGCATTTACAGAGCAGTGAGTGGGCATGTTGGCATTGAACTTGAAGATTC-AATAGGAATATGaataatgacaattatttt-attgaacat---ttgagca--------------------------------------gttatca----ccaaaccatgtgctaagtacatgacatgcatcatctcatttaattcttataatcccccaatgaggaagatgc-tctttacatatgaaaaaactgggatttaaat-------------ttttt-ttaacattcccaaagttatagagccagttattaatgcagcctggattttaacctaggtttatctccaaagactaagaacataactattctgctttgttgCTTCTCTGTTTACATTCTCTCTTGACATGG-A--CTTAAAAGGTCCTTGTGATAGACATAATAGTAGTTATATAA-TGGCTAACCCATAT-GAAGTGATATCTTTTGGGTATA---tgttctcagcgttttatattactaattagtttgac-------------cctcccaagggcctggtgagggtgagtcctatttttatccctattttatggttgagtaaaatgaggcagacagaAA--------ACTGCAGGTCTTTAAGATCC---------GGGCTGTATTTTGT---A--ACAGATTCCTTGGCTCCTGCCTGCCTTCTGTGAGGGACACAGGAATT------------GCAACATTCATTT-------------------------------------------CTTTTCCACTGCACTTTGAG-------GCAACAAACTTTTCTACTTGAGTTCT--------GATGTGT---------------------------GTGACTAAGGGAAGC--ATGTAAAAACATTACTTCTCCTAGATTCTCCCATACACAGGGAGAATTGAATTCATATTTGAGGAAATTAATTCTAACTTGAGAAAATTTGAAATCAATCATTTTCTTTAG--------ATA-----------------TGGCACAGAGCCCTGGAGCA--ACAAGAATTTTCTGCTTGTTTCCAAGTTCCAAATGAGATTAGCTTGAGAACTCCTGTGAGAGTCTCACACTCAGAGAATCCCCATGACTGCCCTACATTCTCTGGACAAATTCCAGTAGAG-CTATGTTTCTTGATCATCTTGATGGGCTTGTTTTGAAAATGAGTAAAGTAT-CCTTATGCAAAGA-----------------------AAAATGAGAAATGTAATATTTGCCTGCTTGGGTTATACAAGAAGGCGTATGA-ACTCAAGCTGGTAGGAATGTTAAGCAGGAAACACC----ACAGAAGCCTGAAAACAATGAAAATCCTTCAACTTTGGAATAAAGGTAGAGGCGTGAGATCAGTCT-----TCCGTCTTTCCATCC----TGTAGTGGGCAATGCCTCTTGACTCATGGCATACAAGcatgcatctctcttttaattcttac---aacccagtgaggaaggta------------ctctttaca-acgaagaaactagggttcagaaagtttGTTTTAACATTTCCAGAGTTCCTTCTATGGGACATGAACATGTGCATTAG-GAAACCATAGGAG i calJac3.chr1 C 0 C 0 s mm10.chr19 37998878 1416 - 61431566 -GCAGGCATTTCC-----------TGAGTGTGTTGATATTGA---TGAAGACCC-CACAGGAAGGTGAATGGTGATCAGCATCAT-CTAAAACACttattatatattattattattattattattattattattattattattattattatATGCTGGACACTGCACTGAG----------GCTTCAGCTCACTGGCTTCTTGCAGCGACCCAGTAAGGAAGACGC-TCCTTACCGATGGCGAAGTTAGAGATGAGAGGT-------TTCTTTTTT-TTAATATTTCCAAAG-------------AACTAATGGGTCCTGGATTTTATCCTAGATCTGTTCTCAAAGATGAAGA--ATCACCG----GGCTTGTTGTCTCTCTGGTCTCCCTGTTGCTTGGCATGG-GTTCCCAACCAG-CTTAGTGATAGAAATAATAGTAGTTAGGAAGACAGCTACAGTTTATGGGAGCGATTCCTCCTATCTGAGCCTTTGCCTGCATGTTTTATGG---TGAGTAATTTGAA-------------CTTCGGAGCAGCCTGGAGA-TCTGGGTCTC-GCTTTAGC--------ACTGTCGAAAACAATG---TATGCTGAAA------------CAGGCCACAGAGACCCAAGGAAACACACCCATATTTTTT---ATTATAGATTTCT--GTTCTAATCTGAATTCTATGAAGAAAATGGCATTTTATTTTACTCACTTAATATTTTTTTTCAATTCTGGGGCTTGACTCCAGACTCCTCAGCAAGTGTTATAACTCTAAACTACACTCCCAGCCCAGGAGATAGAAATTTTATTATTTACGTTTTCTCTGCACTGTGTGATGGCAGGTCTTCTCCACGATTTCTGGTGTAGCTAACAAAACCATATATAAAAACTTTATTTCTTCTAGACATTTCTGTGCATA---------GAACCCCCACC--ACCAAATAAAGTCTAATTTGAGAAGAATTTATGCCAATCTTTTCTTTTAG--------AAA-----------------TAGCACAGGGGCCTGGGATAGGAGAAGAATTTTCTGCTCAGTTCCAAGTTC--AATGAGATTAAGTTGAAAACTTGTGTGAGAGTCTCCCACACACAGAGTCCCCACGAGTGCCTTGTGTTGCCTGGACAGAGTCCAGT---G-TCATGTTT-TTGATACTCTTGATGGCCTTATTTTGAAAAGGAGTCAGAGATATTTTATGAAAAAG-----------------------AAGGTAG-AAATGTAATATCTGCTTGCCT-----------------------------------TAGGGATGTG-AGCAAGACATGCCTTATAAACAAACCTAAGGACTAC-AAAATGTTTTAACTTCAGAATAAAGGCAAGGGGTTGAG-TTAGTCTCTCTGTGTGTCTTTATACTCTCTGTGTACTAAGC-GTGTCTTTTGATTCATAG-ATA-GACCCTGGATTTCTT-TTTAATCCTTAC---AGCTCTATGTGAATGATA------------GTTTTTATTTA-AAAAAAACTGGGAATCATAAAG---AATTAAACATTTGCACTGTT--TTTCGTAAGACATGAATATACgctggagagaaggctcagggg i mm10.chr19 C 0 I 2056 s canFam3.chr1 35240395 1427 - 122678785 TGCAAGCATTTACTGAGCACTGAGTGATTATGTTGG--------TCAAAAATTCTAGTAGAAAAATGAATATTAACAATTATTTTCATGtaacatttattgaaca--------------------------------------atcactatatgccaagcactgtgcttgatgccttgcatgtataatctcactgaatttttacaatgacccaatgaggaagacaagtcattacagatgaagaaagtgggatttgtaggtttgtttgttgttgttt-ttaacattctcaaagtcatggaacaagtaattggtggaatctggatgttaacctccatttgtctccaaagactaagaaaataaccactcagctatTTTACTTTTCTTTTCCCATTCTCCCTTAGCATGATGTTCTTAAAGGATCTTTGAGATAAAAATAATAGTAGTTATagtaataactaatgcttat-ggaataatctctctcgtttatttactgttctgtatgtttgatgttattcactgatttaat-------------tctctcaacacct--gtga-gttgagccttatcttcatcctcattttagggttgaggagagctaggcacacggaagtaacataacttgcaagttgcagagttcctgggtggcagggctgttttttttttaa--acaggttttctggttcctatctatgttttGTGAAGAAGACAGCAGTT------------ATAATATTCCTTT-------------------------------------------GTTTTCT-CTACACTTTGAG-------GCAAGGAACTTTTCCACTTGAGTTCT--------GATATAA---------------------------ATGATGAAGAGAACC--AAGTAAGAGCATTATTTCTTCTAGATTCTTCCATACACCAGGG---------CCCTACC--ACCAAATAAATTCTAATTTGAGGAAATACAAAATTAATCTTTTCCTTTAGCACAGGGAAAAGATTTAGCACTTTCCCTTGGCACAGGACCCTGGTACA--ACAGAA--TTCCTGCCCGGTTCCAAGTTCTAAATGAGAATACTTTGGGAACTCCTATGAGAGTCTCACATTTGCAGCAACCCCACGACTGCCCTGCATTCTCTGGACAGATTCCAGCAGAATTTGTGTTTCTTGATAACCTTATTGGTCTTATTTTGAAAACGAGTCAAATAT--CTCATGCAAAAAGAAAAAAAAGAGAGAGAGAGAAGAAAAGAA-AAACGTAGTATTTGCCTGCTTGGGGTATGGAAAAAGACCTTAGAGAGCCATACTGGTAGAGATAT-AAGCAGGAGATACC----ATATAAGCTGAAGGACAATGAAAC--------CCATGGGATAAAGGCAGATG-GTGAACTCA-TCTCTC--TCTGTCTTTTCCTTC----CATAATGGGTGATGTCTGCTGACCCAAGGGATGTGAACATGC----CTCATTTATTTCCAACCATGACCCAATGGTGAAGATA------------CCCTTAGCAGGTGAAGACACTGTGGGTCAGAGAGTTTGTTTTAACCTTTCAAAAGTCTATTCTGTGGGATGTGAACATGTGTTTTAA-GGCACAATGGGAT i canFam3.chr1 C 0 C 0 a score=81330.000000 s hg38.chr9_GL383541v1_alt 35321 24 + 171286 AATAATGACCTGTGTTCTATTA-TC s panTro4.chr9 68600821 24 + 137840987 AATAATGACCTGTGTTCTATTA-TC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64753907 24 + 135191526 AATAATGACCTGTGTTCTATTA-TC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57794064 24 - 122973662 AATAATGGCCTGTGTTCTATTA-TC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79727518 24 + 112192347 AATAAGGGCCTGTGTTCTATTA-TC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80808372 24 + 112612857 AATAAGGGCCTGTGTTCTATTA-TC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76857469 24 + 107442819 AATAAGGGCCTGTGTTCTATTA-TC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81121025 24 + 108555830 AATAAGGGCCTGTGTTCTATTA-TC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111343419 25 - 210400635 AATAAGGGCCTGTGTTCTATTACTC i calJac3.chr1 C 0 C 0 s canFam3.chr1 35241822 24 - 122678785 AATGAGAGTCTGTGGCTTATTA-TT i canFam3.chr1 C 0 I 1295 e mm10.chr19 38000294 2056 - 61431566 I a score=4887733.000000 s hg38.chr9_GL383541v1_alt 35345 1476 + 171286 CTTCGTGTTAAGCTCTTCTTTCATGACCCCCTCCCCTCTTTCCTCCTCCCGCTGGCTCTTGGTTCTTTATGACTTGCTTTCCCAAGCCTAGAACAAGTTCTTTCCTCATTCATTCAGGTAATCTAGTGCCATTATCACAAAACCAACGCCATGTTCCACAGTTCAAAGACAGTTTCAATAAAGTACAGGTAGAGAGAAAGCTTCTGCTACAACATTCAGTTCTTTTTGGCCTCAATCCTTGAA-AATAGATTTCTTCATCG--TTTTTTCCAGAGACAGTGTAATGGCTGATGGCTATGTTAGGATCTATTAG--AGGCTAA-GGGGCTGAGATCAAAGGCTATGTTCTTGTGAAGCCTACACTGCCACACCCAAATACCCAATTCATGAGCTCCCTTGACTGGAGGCTCAGTACA--CTTGATTCACTGATGAATTAAATAGGTAAGGGTGtgcactagtgtcatttcctatgcatgtctggaaccctcttccttcagaccttcacacaacattctgtgtctcttcattcaagccttggttgaaatgttagcttctctcctgagctaagatcgaccttaagttcaaccttcctcacagtca-----------cctgattgtaattctttcactaggacattggctctctgatatttttcttgtggatttaattatttgttcattgtctatcaaccctgctgaactctaagctttgtgtttattgtctatcaaccctgttaaactcgaagcaaagaatccctctcacttgtgtca--ccagattctcctgtgcccaacacagtgtttggcactggagagacactcagaatatgtttgacaaatggatgaatGAATCTTAGTCCCTGTGGCAATTCAGCCTTAGCAATCTATGAAGGCTGACACCTTGTCAGGCTTTTTT-AAATAAAAAGAAATAACAGATGAGCTCGAGCATCATGGAGACTTCCTGCCTAAGTGATGTGCTTCCCTCAGGGATGTATCTAGGCAGAAGCAGTGAATAGAAAAAATGAATTTTT-CAGTTATGCTTTCATCCTGCTGTTATGGCACCCCCAACTGTCC--TTGTCTGCTGGTTCGAATGAGTGTTCCACTGGGAAAAC--AGATTTAT-TTCCCAGAAACAGGATAGCATTTTCTTCTTTTGACAAATCTAGAAAGCAATTCCTGCAGCAAAGAAAAGATATATAACATGCAGATACTAAATTCCAAGACACTGCCCAGTCATGAGTAAGAAG--------gtgtgtgtgtgtgtctg--------------tctgtctgtctgtG-TC----------------agagagagagaga----------------aagagagagagacagagagaAATCCTTAACTAATCTGTGGCTAGGTCTTCCCAGTCCCAGATGTTGAATTGG--TTGAATGAATTGTTTAAA--CAAT--TGTCTTAATTCTCTTCCCTTCCCCTAAGAGAAGCCA--CTGATACCTGGAACCCATCATGGTACTCAAACTTCAGGTAACATGGAAAACACTCTCTCTCATCATCATGGA-TT s panTro4.chr9 68600845 1480 + 137840987 CTTCGTGTTAAGCTCTTCTTTCATGACCCCCTCCCCTGTTTCCTCCTCCCGCTGGCTCTTGGTTCTTTATGACTTGCTTTCCCAAGCCTAGAACAAGTTCTTTCCTCATTCATTCAGGTAATCTAGTGCCATTATCACAAAACCAACACCATGTTCCACAGTTCAAAGACAGTTTCAATAAAGTACAGGTAGAGAGAAAGCTTCTGCTACAACATTCAGTTCTTTTTGGCCTCAATCCTTGAA-AATAGATTTCTTCATCA--TTTTTTCCAGAGACAGTGTAATGGCTGATGGCTATGTTAGGATCTATTAG--AGGCTAA-GGGGCTGAGATCAAAGGCTATGTTCTTGTGAAGCCTACACTGCCACACCCAAATACCCAATTCATGAGCTCCCTTGACTGAAGGCTCAGTACA--CTTGATTCACTGATGAATTAAATAGGTAAGGGTGtgcactagtgccatttcctatgcatgtctggaaccctcttccttcagaccttcacacaacattctgtgtctcttcattcaagccttggttgaaatgttagcttctctcctgagctaagatcgaccttaagttcaatcttcctcacagtca-----------cctgattgtaattctttcactaggacattggctctctgatatttttcttgtggatttaattatttgttcattgtctatcaaccctgctgaactctaagctttgtgtttattgtctatcaaccctgttaaactcgaagcaaagaatccctctcacttgtgtca--ccagattctcctgtgcccaacacagtgtttggcactagagagacactcagaatatgtttgacaaatggatgaatGAATCTTAGTCCCTGTGGCAATTCAGCCTTAGCAATCTATGAAGGCTGACACCTTGTCAGGCTTTTTT-AAATAAAAAGAAATAACAGATGAGCTCGAGCATCATGGAGACTTCCTGCATAAGCGATGTGCTTCCCTCAGGGATGTATCTAGGCAGAAGCAGTGAATAGAAAAAATGAATTTTT-CAGTTATGCTTTCATCCTGCTGTTATGGCACCCCCAACTGTCC--TTGTCTGCTGGTTCGAATGAGTGTTCCACTGGGAAAAC--AGATTTAT-TTCCCAGAAACAGGATAGCATTTTCTTCTTTTGACAAATCTAGAAAGCAATTCCTGCAGCAAAGAAAAGATATATAACATGCAGATACTAAATTCCAAGACACTGCCCAGTCATGAGTAAGAAG----gtgtgtgtgtgtgtgtgtgtg--------------tctgtctgtctgtg-tC----------------agagagagagaga----------------aagagagagagacagagagaAATCCTTAACTAATCTGTGGCTAGGTCTTCCCAGTCCCAGATGTTGAATTGG--TTGAATGAATTGTTTAAA--CAAT--TGTCTTAATTCTCTTCCCTTCCCCTAAGATAAGCCA--CTGATACCTGGAACCCATCATGGTACTCAAACTTCAGGTAACATGGAAAACACTCTCTCTCATCATCATGGA-TT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64753931 1453 + 135191526 CTTCTTGTTAAGCTCTTCTTTCATGACCCCCTCCCCTCTTTCCTCCTCCCACTGGCTCTTGGTTCTTTATGACTTGCTTTCCCAAGCCTAGAACAAGTTCTTTCCTCATTCATTCAGGTAATCTAGTGCCATTATCACAAAACCAACGCCATGTTCCACAGTTTAAAGACAGTTTCAATACAGTACAGGTAGAGAGAAAGCTTCTGCTACAACATTCAGTTCTTTTTGGCCTCAATCCTTGAA-AATAGATTTCTTCATCA--TTTTTTCCAGAGACAGTGTAATGGCTGATGGCTATGTTAGGATCTATTAG--AGGCTAA-GGGGCTGAGATCAAAGGCTATGTTCTTGTGAAGCCTACACTGCCACACCCAAATACCCAATTCATGAGCTTCCTTGACTGGAGGCTCAGTACA--CTTGATTCACTGATGAATTAAATAGGTAAGGGTGtgcactagtgccatttcctatgcatgtctggaaccctcttccttcagaccttcacacaacattctctgtctcttcattcaagcgttggttgaaatgttagcttctctcctgagctaagattgaccttaagttcaacctttctcacagtca-----------cctgattgtaattctctcactagcacattggctctctgatatttttcttgtggatttaattatttgttcattgtctatcaaccctgctgaactctaagctttgtgtttattgtttatcaaccctgttaaactctaagcaaagaatccgtctcacttgtgtca--ccagattctcctgtgcccaacacagtgtttggcactgcagagacactcaga--atgtttgacaaatggatgaatGAATCTTAGTCCCTGTGGCAATTCAGCCTTAGCAATCTATGAAGGCTGACACCTTGTCAGGCTTTTTT-AAATAAAAAGAAATACCAGATGAGCTCCAGCATCATGGAGACTTCCTGCATAAATGATGTGCTTCCCTCAGGGATGTATCTCGGCAGAAGCAGTGAATAGAAAAGATGAATTTTT-CAGTTATGCTTTCATCCTGCTGTTATGGCACCCCCAACTGTCC--TTGTCTGCTGGTTCGAATGAGTGTTCCACTGGGAAAAC--AGATTTAT-TTCCCAGAAACAGGATAGCATTTTCTTCTTTTGACAAATCTAGAAAGCAATTCCTGCAGCAAAGAAAAGATATATAACATGCAGATACTAAATTCCAAGACACTGCCCAGTCATGAGTAAGAAG--------gtgtgtgtgtgtgtgtg----------------tgtctgtctgtg-tC----------------AGAGAG------------------------------------AGAGAGAAATCCTTAACTAATCTGTGGCTAGGTCTTCCCAGTCCCAGATGCTGAATTGG--TTGAATGAATTGTTTAAA--CAAT--TGTCTTAATTCTCTTCCCTTCCCCTAAGATAAGCCA--CTGATACCTGGAACCCATCATGGTACTCAAACTCCAGGTAACATGGAAAACACTCTCTCTTATCATCATGGATTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57794088 1484 - 122973662 CTTCTTGTTAAGCTCTTCTTTCATGACCCCCTCCCCTCTTTCCTCCTCCTGCTGGCTCTTGGTTCTGTATGACTTGCTTTCCCAAGCCTAGAACAAGTTCTTTCCTCATTCATTCAGGTAATCTAGTGCCATTATCACAAAACCAATGCCATGTTCCACAGTTCAAAGACAGTTTCAATAAAGTACAGGTAGAGAGAAAGCTTCTGCCACAACATTCAGTTCTTTTTGGCCTCAATCCTTGAA-AATAGATTTCTTCATCG--TTTTTTCCAGAGACAGTGTAATGGCTGATGGCTATGTTAGGATCTATTAG--AGGCTAA-GGGGCTGAGATCAAAGGCTATGTTCTTGTGAAGCCTACACTGCCACACCCAAATACCCAATTCATGAGCTCCCTTGACTGGAGGCTCAGTACA--GTTGATTCACTGATGAATTAAGTAGGTAAGGGTGtgcactagtgccatttcctatgcatgtctggaaccctcttccttcagaccttcacacaacattctctgtctcttcattcgagccttggttgaaatgttagcttctttcctgagctaagatcaaccttaagttcaaccttcctcacagtca-----------cctgattgtaattctctcactagcacattggctgtctgatatttttcttgtggatttaattatttgttcattgtctatcAA--CTGCTGAACTCTAAGCTTTGTGTTTATTGTCTATCAGCCCTGTTAAATTCTAAGCAAAGAATCCCTCTCActtgtgtca--ccagattctcctgtgcccaacacagtgtttggcactggagagacactcagaaaatgtttgacaaatggatgaatGAATCTTAGTCCCTGTGGCAATTCAGCCTTAGCAATCTATGAAGGCTGGCACCTTGTCAGGCTTTTTT-AAATGAAAAGAAATACCAGATGAGCTCGAGCATCATGGAGACTTCCTGCATAAGTGATGTGCTTCCCTCAGGGATGTTTCTAGGCAGAAGCAGTCAATAGAAAAGATGAATTTTT-CAGTTATGCTTTCATCCTGCTGTTGTGGCACCCCCAACTGTCC--TTGCCTGCTGGTTCAAATGAGTGTTCCACTGGGAAAAC--AGATTTAT-TTCCCAGAAACAGGATAGCATTTTCTTCTTTTGACAAATCTAGAAAGCAATTCCTGCAGCAAAGAAAAGATATATAACATGCAGATACTAAATTCCAAGACACTGCCCAGTCATGACTAAGAGG----GGGTGTGTGTGTATGTGTGtg--tctgtctgtctgtctgtctgtctgtG-TC----------------agagagagagaga----------------gagagag------agagagaAATCCTTAACTTTTCTGTGGCTAGGTCTTCCCAGTCCCAGATGTTGAATTGG--TTGAATGAATTGTTTAAA--CAAT--TGTCTTAATTCTCTTCCCTTCTCCTAAGATAAGCCA--CTGATACCTGGAACCCATCATGGTACTCAGACTCCAGGTAACATGGAAAACACTCTCTCTCATCATCATGGA-TT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79727542 1475 + 112192347 CTTCTTGTTAAGCTCATCTTTCATGACCCCCTCCCCTCTTTCCTCCTCCTGCTGGCTTTTGGTTCTTTATGACTTGCTTTCCCAAGCCTAGAACAAGTTATTTCCTCATTCATTCAGGTAACCTAGTGCCATTATCACAAAACCAACACCATGTTCCACAGTTCGAAGACAGTTTCAATAAAGTACAGGTAGACAGAAAGCTTCTGCCACAACATTCAGTTCTTTTTGGCCTCAATCCTTGAA-AATAGATTTATTCATTG---ATTTTCCAGAGACAGTGTAATGGCTGATGGCTGTATTAGGATCTATTAG--AGGCTAA-GAGACTGAGATCAAAGGCTATG--CTTGTGAAGCCTACACTGCCACACCCAAATACCCAATTCATTAGCTCCCTTGACTAGA-GCTCAGTACA--CTTGATTCACTAATGAATTAAATAAGTAAAGGTGtgcactagtgccatttcctacgcatgtctggaaccctcttccttcagaccttcacacagcattctctgtctcttcattcaagccttggttgaaatgttagcttctctcttgagctaagatcgaccttaatttcaaccttcctcacagtca-----------cctgattgtaattctctcactagcacattgactctctgatatctttcttgtggatttaattatttgttcattgtctatcaatgctgctaaactctaagctttgtgTTTATTGCCTACCAACCCTGTTAAACTCTAAGCAAAGAATCCCTCTCActtgtgtca--ccagattctcctgtgcccaacacagtgtttggcactggagaaacactcagaaaatgtatgacaaatggatgaatGAATCTTAGTCCCTGTGGCAATTCAGACTTAGCAATATATGAAGGCTGGCACCTTGTCAGGCTTTTTTAAAATGAAAAGAAATACCAGATGAGCTTGAGCATCATGGAGGCTTCCTGCATAAGTGATGTGTTTCCCTCAGGGATGTATCTAGGCAGAAGCAGTGAATAGAATAGATGAATTTTT-CAGTTATGCTTTCATCCCGCTGTTGTGGCACCCCCAACTGTCC--TTGTCTGCTGGTTTGAATGAGTGTTCCACTGGGAAAAT--AGATTTAT-TTCCCAGGAACAGGATAGCATTTTCTTCTTTTGACAAATCTAGAAAGCAATTCCTGCAGCAAAGAAAAGATACGTAACACGTAGATACTAAATTCCAAGACACTGCCCAGTCATGAGTAAGAAGAGAGGGgtgtgtgtgtgtctgtgtg--------------tctgtgtgtctgtg-tC----------------------agagaga----------------gagagagagagagagagGTAAATCCTTAACTAATCTGTGGCTAGGTCTTTCCAGGCCCAGATGCTGAATTGG--TTGAATGAATTGTTTAAA--CAAT--TGTCTTAATTATCTTCCCTTCCCCTAAGATAAGCCA--CTGATACTTGGAACCCATTATGTTACTCAAACTCCAGGTAACATGGAAAACACTCTCTCTCATCACCATGGA-tt i rheMac3.chr15 C 0 I 307 s macFas5.chr15 80808396 1485 + 112612857 CTTCTTGTTAAGCTCATCTTTCATGACCCCCTCCCCTCTTTCCTCCTCCTGCTGGCTCTTGGTTCTTTATGACTTGCTTTCCCAAGCCTAGAACAAGTTATTTCCTCATTCATTCAGGTAACCTAGTGCCATTATCACAAAACCAACACCATGTTCCACAGTTCGAAGACAGTTTCAATAAAGTACAGGTAGACAGAAAGCTTCTGCCACAACATTCAGTTCTTTTTGGCCTCAATCCTTGAA-AATAGATTTATTCATTG---ATTTTCCAGAGACAGTGTAATGGCTGATGGCTGTATTAGGATCTATTAG--AGGCTAA-GAGACTGAGATCAAAGGCTATG--CTTGTGAAGCCTACACTGCCACACCCAAATACCCAATTCATTAGCTCCCTTGACTAGA-GCTCAGTACA--CTTGATTCACTAATGAATTAAATAAGTAAAGGTGtgcactagtgccatttcctacacatgtctggaaccctcttccttcagaccttcacacagcattctctgtctcttcattcaagccttggttgaaatgttagcttctctcttgagctaagatcgaccttaatttcaaccttcctcacagtca-----------cctgattgtaattctctcactagcacattgactctctgatatctttcttgtggatttaattatttgttcattgtctatcaatgctgctaaactctaagctttgtgTTTATTGTCTACCAACCCTGTTAAACTCTAAGCAAAGAATCCCTCTCActtgtgtca--ccagattctcctgtgcccaacacagtgtttggcactggagagacactcagaaaatgtttgacaaatggatgaatGAATCTTAGTCCCTGTGGCAATTCAGACTTAGCAATATATGAAGGCTGGCACCTTGTCAGGCTTTTTTAAAATGAAAAGAAATACCAGATGAGCTTGAGCATCATGGAGGCTTCCTGCATAAGTGATGTGTTTCCCTCAGGGATGTATCTAGGCAGAAGCAGTGAATAGAATAGATGAATTTTT-CAGTTATGCTTTCATCCCGCTGTTGTGGCACCCCCAACTGTCC--TTGTCTGCTGGTTTGAATGAGTGTTCCACTGGGAAAAT--AGATTTAT-TTCCCAGGAACAGGATAGCATTTTCTTCTTTTGACAAATCTAGAAAGCAATTCCTGCAGCAAAGATAAGATACGTAACATGTAGATACTAAATTCCAAGACACTGCTCAGTCATGAGTAAGAAGAGAGGGgtgtgtgtgtgtctgtgta--------------tctgtgtgtctgtg-tC------------agagagagagagagaga----------------gagagagagagagagagGTAAATCCTTAACTAATCTGTGGCTAGGTCTTTCCAGGCCCAGATGCTGAATTGG--TTGAATGAATTGTTTAAA--CAAT--TGTCTTAATTATCTTCCCTTCCCCTAAGATAAGCCA--CTGATACTTGGAACCCATCATGTTACTCAAACTCCAGGTAACATGGAAAACACTCTCTCTCATCACCATGGA-tt i macFas5.chr15 C 0 I 307 s papAnu2.chr15 76857493 1480 + 107442819 TTTCTTGTTAAGTTCATCTTTCATGACCCCCtcccctctttcctcctcctgctgGCTCTTGGTTCTTTATGACTTGCTTTCCCAAACCTAGAACAAGttctttcctcattcattcaggTAACCTAGTGCCATTACCACAAAACCAACACCATGTTCCACAGTTCGAAGACAGTTTCAATAAAGTACAGGTAGACAGAAAGCTTCTGCCACAACATTCAGTTCTTTTTGGCCTCAATCCTTGAA-AATagatttattcattg---attttccAGAGACAGTGTAATGGCTGATGGCTGTATTAGGATCTATTAG--AGGCTAA-GAGACTGAGATCAAAGGCTATG--CTTGTGAAGCCTACACTGCCACACCCAAATACCCAATTCATTAGCTCCCTTGACTAGA-GCTCAGTACA--CTTGATTCACTAATGAATTAAATAAGTAAAGGTGTGCACTAGTGCCATGTCCTACGCATGTCTGGAACCCTCTTCCTTCAGACCTTCACACAGCATTCTCTGTCTCTTCATTCAAGCCTTGGTTGAAATGTTAGCTTCTCTCTTGAGCTAAGATCGACCTTAATTTCAACCTTCCTCACAGTCA-----------CCTGATTGTAATTCTCTCACTAGCACATTGACtctctgatatttttcttgtggatttaattatttgttcattGTCTATCAATGCTGCTAAACTCTAAGCTTTGTGTTTATTGTCTACCAACCCTGTTAAACTCTAAGCAAAGAATCCCTCTCACTTGTGTCA--CCAGATTCTCCTGTGCCCAACACAGTGTTTGGCACTGGAGAGACACTCAGAAAATGTTtgacaaatggatgaatgaatctTAGTCCCTGTGGCAATTCAGACTTAGCAATATATGAAGGCTGGCACCTTGTCaggcttttttaaaatgaaaaaaaataccaGATGAGCTTGAGCATCATGGAGGCTTCCTGCATAAGTGATGTGTTTCCCTCAGGGATGTATCTAGGCAGAAGCAGTGAATAGAATAGATGAATTTTT-CAGTTATGCTTTCATCCCGCTGTTGTGGCACCCCCAACTGTCC--TTGTCTGCTGGTTTGAATGAGTGTTCCACTGGGAAAAT--AGATTTAT-TTCCCAGGAACAGgatagcattttcttcttttgacaaaTCTAGAAAGCAATTCCTGCAGCAAAGAAAAGATACGTAACATGTAGATACTAAATTCCAAGACACTGCCCAGTCATGAGTAAgaagagaggggtgtgtgtgtgtctgtgta--------------tctgtgtgtctgtg-tc----------------agagagagagaga----------------gagagagagagagagaggtaaatCCTTAACTAATCTGTGGCTAGGTCTTTCCAGGCCCAGATGCTGAATTGG--TTGAATGAATTGTTTAAA--CAAT--TGTCTTAATTATCTTCCCTT-CCCTAAGATAAGCCA--CTGATACTTAGAACTCATCATGTTACTCAAACTCCAGGTAACATGGAAAACACTCTCTCTCATCAccatgga-tt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81121049 1497 + 108555830 CTTCTTGTTAAGCTCATCTTTCATGACCCCCTCCCCTCTTTCCTCCTCCTGCTGGCTCTTGGTTCTTTATGACTTGCTTTCCCAAGCCTAGAACAAGTTCTTTCCTCATTCATTCAGGTAACCTAGTGCCATTATCACAAAACCAACACCATGTTCCACAGTTCAAAGACAGTTTCAATGAAGTACAGGTAGACAGAAAGCTTCTG-CACAACATTCAGTTCTTTTTGGCCTCAATCCTTGAA-AATAGATTTCTTCATTG---ATTTTCCAGAGACAGTGTAATGGCTGATGGCTGTATTAGGATCTATTAG--AGGCTAA-GAGACTGAGATCAAAGGCTATGTTCTTGTGAAGCCTACACTGCCACACCCAAATACCCAATTCATGAGCTCCCTTGACTAGA-GCTCAGTACA--CCTGATTCACTAATGAATTAAATAAGTAAAGGTGtgcactagtgccatttcctacgcatgtctggaaccctcttccttcagaccttcacacagcattctctgtctcttcattcaagccttggttgaaatgttagcttctctcttgagctaagatcgaccttaatttcaatcttcctcacagtca-----------cctgattgtaattctctcactagcacattgactctctgatattcttcttgtggatttaattatttgttcattgtctatcaatgctgctaaactctaagctttgtgtttattgtctaccaaccctgttaaactctaagcaaagaatccctctcacttgtgtca--ccagattctcctgtgcccaacacagtgtttggcactggagagacactcagaaaatgtttgacaaatggatgaatAAATCTTAGTCCCTGTGGCAATTCAGACTTAGCAATATATGAAGGCTGGCACCTTGTCAGGCTTTTTTAAAATGAAAAGAAATACCAGATGAGCTTGAGCATCATGGAGGCTTCCTGCATAAGTGATGTGTTTCCCTCAGGGATGTATCTAGGCAGAAGCAGTGAATAGAATAGATGAATTTTT-CAGTTATGCTTTCATCCCGCTATTGTGGCACCCCCAACTGTCC--TTGTCTGCTGGTTTGAATGAGTGTTCCACTGGGAAAAC--AGATTTAT-TTCCCAGGAACAGGATAGCATTTTCTTCTTTTGACAAATCTAGAAAGCAATTCCTGCAGCAAAGAAAAGATACATAACATGTAGATACTAAATTCCAAGACACTGGCCAGTCATGAGTAAGAAGAGTGGGgtgtatgtgtgtctgtgtg--------------tctgtgtgtctgtg-tCAAagagagagagagagagagagagagaga----------------gagagagagagagagagGTAAATCCTTAACTAATCTGTGGCTAGGTCATTCCAGGCCCAGATGCTGAATTGG--TTGAATGAATTGTTTAAATTCATTCATGTCTTAATTATCTTCCCTTCCCC-----TAAGCCA--CTGATACTTGGAACCCATCATGTTACTCAAACTGCAGGTAACATGGAAAATACTCTCTCTCATCACCATGGA-TT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111343444 1508 - 210400635 CTTCTTGTTAAGCTCGTCTTTCATGACCCCCTCCCCTCTTTCCTCCTCCCGTTGGCTCTTGGTTCTTTATGACTTGCTCTCCTAAGCCTAGAACAAGTTCTTTCCTCACTCATTCGGGTAACCTAGTGCCATTATCACAAAACCAATTACCTGTTCCACACTTCAAAGACAGTTTCAGTCAAGTACACGTTGAGAGAAAGGTTCT---ACAACATTCAGTTCTTTTTGGCCTCAATCCTTGAAGAATAGATTTCTTCATAGTTTTTTTTCGATAGATAGTGTAATGGCTGATGGCTGTGTGAGGATCTAGTAG--AGGCTAA-GGGGCCGAGATGAAAGGATATGTTCTTGTGAAACCAACACTGCCACACCCAAATACTCAATTCATGAGCTCCCTTGGCTGGA-GCTCAGTGCA--CTTGATTCACTGATGAATGAAACAGGTAAGGGTGtgcactagtgccgtttcctatgcatgtctggaaccctcttcctttagaccttcacacagcattctctgtctcttcatttaagcctcggttgaaacgttgacttctctcctgagcttagatagatcttcaattcagccttcttcacagtca-----------cctgattgtaattctctcactagcacattggcactctgatatttttcttgtggatttaattacttgttcattgtctatcaatcctattaaactctaagctttatATTTATTGCCTATGAACTCTGTTAAACTCTAAGCAAAGAATCTCTCTCAGTTGTGTCA--CCAGATtctcctgtgcccaacacagtgtctggcactggagagataagcagaatatgtttgatgaatggatgaatGAATCTTAGTCCCTATGGCAGTTCAGCCCTAGAAATCTACGAAGGCTGGCACCTTGTCAGGCTTTTTT-AAATGAAAAGAAATACCAGATGAGCCTGAGCATCATGGAGACTTCCTCCATAAGTGATAGGCTTCCCTGAGGGATGTATCTAGGCAGAAGCAGTGAATAGAAAAGATGAATTTTTCCAGTTATGCTTTCATTCTGTTGTTGTGACACCCCCAACTGCCT--TTGTCTGCTGGTTTGAGTGAGTGTTCCACTGAGAAAATGGAGATTTAT-TTCCCAGAAAGAGGATAGCATTTTCTCATTTTGACAAATCTAGAAAGCAATTCCTGCAGCAAGGAAAAGATATATAACATGTAGACGCTAAATTCTAAGACATTGCTCAGTCATGAGTAAGAAC----GGgtgtgtgtgtatgtgtgtgtgtctgtctgtctgtctgtctgtgtgtg-tC----------------agagagagagagagacggagggaggcggggagagagaaagagagagagaAATCTTTAACTAGTCTGTGGCTAGGTCTTCTCAGTTCCAGATATTGAATTAG--TTGAATGAATTATGCAAA--CAAT--TGTCTTAATTCACTTCCCTTCCCCTAAGATAAGCCA--CTAATACCTGGAACCCATCAAGGTTCTCAAACTCCAGATGACATGGAAAA----CCCTCTTATCAACATGAA-TT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35243141 1384 - 122678785 CTTCCTGTTTAGCTCATCCTACATG--CCATCCCCTTCTTTCCTTTTCATGCAGGTTCTCAGTCCTCCACGACTTGCTTTTCCAAGTCTG-----------TTCCTCATTCATTCAGGGAACTGAGTGCCATTATAACAAAACTGATGCTGTGTCTCAC-TTCCTAAGCCAGCTTCCATAAAGTAGAAATGAAGAGAGAGCTT--------ATATTCAGTTCCTTAGGTCCTCGAAACTTAAAGGATAGA-TTCTTCATTC---------CAGGAACTATGTGATGGTTCACAGCTCCATT---ATCTGGAAGACATGCTAATGAGGCTAAGATC-AAGGCCATGTCCCCGTGAAGCCTGCACCGCCCCACCT-GGTACCCAGCTCTCAAGATGCATTTACTGGA-GCTCAGTACATGCTTGATTCACTGGTAAATGAAGTAGGTGAGGATGTGTGGTAGCgtcgtgtcct----gtgtctggggccctctcccct-agaccttcatgtagctgtctctttcttgtcctctcagcctcagcgggaatgttgcctccttccctgagc---accctatctcaagtgtgacc-tcctcacagtcactaccacatcgcccgattttaatgagcattagagcacagtagctctctgatatttttcacgttgattttgttgcatatatattgcctgccaactctgctgaactgcccactttgtgg---------------------------agagcgaggaacctgtctcatatgtgtccctctgggttctcccatgctcagcacagtgtctgccacctgaaagacactcgataaatatttgacgagtggatgaaCAAATCCTAGTCACTGTGAAGATGCTGCCTTAGAAATGTATGAAGAA-----------------TTGGT-AAGTGGAAAGAAATACCAGATGAGGCCAAGCATCACAGAGACGTTCTCCATAAGTGATGTGTTTTCCTCAAGGATGTGTTTAGACAGGCACATCAGACAGAAAAGGTGAATTTTT-CAGTTACGCTTTGGTTCTGCTGTGATGGTGCCACTGGCTCTCCCTTTGTCTGCTGCTTTGAGTGAGTG-TCTACTGGGAGAAC--AGAGATGTATTACCAGACACAGGATAGTATTTTCTTCTTTGGACAAATGTAGAAAGCAGTTCCTGCAACAAAGAAAAGATAGAGAACATTTAGAAACGAAATTCTAAGATGCTGCCCAAACATGAGTAAGAAG------GTATGAGTGTGTGTGTGTG--AAGCATAAATCATTCATTAGTCTGTGATC--------------------CGAGAGCGA----------------------------------------TTTTTCTGAAAACTGACTAGTTCCTCCCACT------------ATTGGTTTTGTGTGGTTTATTCAAA--CACT--TGTCTCAATCTTCTTCTCTTTCCCTAAGATAAGCCAAGCTGATACCTGAAATCCATCATGGTGCTCATACTCCAGATCACATGGAAAATATTCTCCCTTCTCAC---AGA-TT i canFam3.chr1 I 1295 C 0 e mm10.chr19 38000294 2056 - 61431566 I a score=4095.000000 s hg38.chr9_GL383541v1_alt 36821 1 + 171286 T s panTro4.chr9 68602325 1 + 137840987 T i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64755384 1 + 135191526 T i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57795572 1 - 122973662 T i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79729324 1 + 112192347 T i rheMac3.chr15 I 307 C 0 s macFas5.chr15 80810188 1 + 112612857 T i macFas5.chr15 I 307 C 0 s papAnu2.chr15 76858973 1 + 107442819 t i papAnu2.chr15 C 0 I 318 s chlSab2.chr12 81122546 1 + 108555830 T i chlSab2.chr12 C 0 I 313 s calJac3.chr1 111344952 1 - 210400635 T i calJac3.chr1 C 0 C 0 s canFam3.chr1 35244525 1 - 122678785 T i canFam3.chr1 C 0 C 0 e mm10.chr19 38000294 2056 - 61431566 I a score=201079.000000 s hg38.chr9_GL383541v1_alt 36822 56 + 171286 TTCTTTTAGGATCCCAAATAACACAGAACTCAGTGTGGAGCTCCCAAAGCAGTTGG s panTro4.chr9 68602326 56 + 137840987 TTCTTTTAGGATCCCAAATAACACAGAACTCAGTGTGCAGCTCCCAAAGCAGTTTG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64755385 56 + 135191526 TTTTTTTAGGATCCCAAATAACACAGAACTCAGTGTGGAGCTCCCAAAGCAGTTTG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57795573 56 - 122973662 TTCTTTTAGGATCCCAAATGACACAGAACTCAGTGTGGAGCTCCCAAAGCAGTTTG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79729325 56 + 112192347 TTCTTTTAGGATCCCAAATGACACAGAACTCAGTGTAGAGCTCCCAAAGCAGTTTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80810189 56 + 112612857 TTCTTTTAGGATCCCAAATGACACAGAACTCAGTGTAGAGCTCCCAAAGCAGTTTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76859292 56 + 107442819 ttcttttagGATCCCAAGTGACACAGAACTCAGTGTAGAGCTCCCaaagcagtttg i papAnu2.chr15 I 318 C 0 s chlSab2.chr12 81122860 56 + 108555830 TTCTTTTAGGATCCCAAATGACACAGAACTCAGTGTAGAGCTCCCAAAGCAGTTTG i chlSab2.chr12 I 313 C 0 s calJac3.chr1 111344953 56 - 210400635 TTCTTTTAGGATCCCAAATGACACAGAACTCAGTGTGGCACTACCAAATCCAGTGG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35244526 55 - 122678785 TTCTTTTATGATGCCAA-TGACACAGAACCCAGTGTGGAGCTCTTGAAGCAGTTTG i canFam3.chr1 C 0 I 227 e mm10.chr19 38000294 2056 - 61431566 I a score=2049644.000000 s hg38.chr9_GL383541v1_alt 36878 600 + 171286 GAAAAAGAAA--GCCAATGAATGGATGTGAGTGGCTGGCCCTAATTTTCATGCATCCTTATGCAAA--TGCACAGTGTGTTGCATTTCTATACCTGCCTCTCTATGGAGGTGTGGGATAGCCAGTATTACAACCAAGAGTTTACATCTGTGTTCTCCAGGCCCACTTAAATAGAACCACAGCTACCAATCACTGCCATTTATCATGGGCCCCTACAATTtttgcacactttaccttggtt---cacacaaccaccctctgaggtgagtgacatcccttctagttcacaaatgaggaagcagaagtttctgttggttaaatggtgtctgcctgacatcacacagctagaagtggcagggctgggGCAGGAAGTCTTGTCAT-GGTGTCTATCCTGCCTCCC-------AAAGCACTGTCATTATTTTCAGATCCCTCTTAAAGTACTT-ATCACTCTTTCACTGTATTGGTATTCTTTCAGAACATATCTTTCCCCTCCTATTAGGC------TCTAGAGGTTGGCATCCATATCTCTTCCTTCTCTTCATCCCCTGTAGGGTCTTAGTGAAATGCTCTGCACATAACAAACcaggaact-ggactaaggtgaggaaaatgagg s panTro4.chr9 68602382 600 + 137840987 GAAAAAGAAA--GCCAATGAATGGATGTGAGTGGCTGGCCCTAATTTTCATGCATCCTTATGCAAA--TGCACAGTGTGTTGCATTTCTATACCTGCCTCTCTATGGAGATGTGGGATAGCCAGTATTACAACCAAGAGTTTAGATCTGTGTTCCCCAGGCCCACTTAAATAGAACCACAGCTACCAATTACTGCCATTTATCATGGGCCCCTACAATTtttgcacactttaccttggtt---cacacaaccaccctccgaggtgagtgacattccttctagttcacaaatgaggacgcagaagtttctggtggttaaatggtgtctgcctgacatcacacagctagaagtggcagggctgggGCAGGAAGTCTTGTCAT-GGTGTCTATCCTGCCTCCC-------AAAGCACTGTGATTATTTTCAGATCCCTCTTAAAGTACTT-ATCACTCTTTCACTGTATTGGTATTCTTTCAGAACATATCTTTCCCCTCCTATTAGGC------TCTAGAGGTTGGCATCCATATCTCTTCCTTCTCTTCATCCCCTGTAGGGTCTTAGTGAAGTGCTCTGCACATAACAAACcaggaact-ggactaaggtgaggaaaatgagg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64755441 598 + 135191526 GAAAAAGAAA--GCCAATGAATGGATGTCAGTGGCTGGCCCTAATTTTCATTCATCCTTATGCAAA--TACACAGTGTTTTGCATTTCTATACCTGC--CTCTATGGAGGTGTGGGATAGCCAGTATTACAACCAAGAGTTTAGATCTGTGTTCCCCAGGCCCACTTAAATAGAACCACAGCTACCAATTACTGCCATTTATCATGGGCCCCTACAATTtttgcacactttaccttggtt---cacacaaccaccctctgaggtgagtgacattccttctagttcacaaatgaggaagcagaagtctctggtagttaaatgatgtctgcctgacatcacacagctagaagtggcagggctgggGCAGGAAGTCTTGTCAT-GGTGTCTATCCTGCCTCCC-------AAAGCACTGTCATTATTTTCAGATCCCTTTTAAAGTACTT-ATCACTCTTTCACTGTATTGGTATTCTTTCAGAACATATCTTTCCCCTCCTATTAGGC------TCTAGAGGTTGGCATCCATATCTCTTCCTTCTCTTCATCCCCTGTAGGGTCTTAGTGAAATGCTCTGCATGTAACAAGCcaggaatt-ggactaaggtgaggaaaatgagg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57795629 600 - 122973662 GAAAAAGAAA--GCCAATGAATGGATGTGAGTGGCTGGCCCTAATTTTCATGCATCCTTATGCAAA--TGCACAGTGTATTGCATTTCTATACCTGCCTCTCTATGAAGGTGTGGGATAGCCAGTATTACAACCAACAATTTAGATCTGTGTTCCCCAGGCCCACTTAAATAGAACCACAGCTACCAATTACTGCCATTTATCAAGGGCCCCTACGTTttttgtacactttaccttggtt---cacacaaccaccctctgaggtgagtgacattccttctagttcacaaatgaggaagcattagtctctggtggttaaatggtgtctgcctgacatcacacaactagaagtggcagggctggggcAGGAAGTCTTGTCATAAGTGTCTATCCTGCCTCCC-------AAAGCGCTGTCATTATTTTCAGATCCCTCTTAAAGTACTT-ATCACTCTTTCACTGTATTGGTATTCTTTCAAAACATATCTTTCCCCTCCTATTAGGC------TCTAGAGGTTGGCATCAATATCTCTTCCTTCTCTTCATCCCCTGTAGGGTCTTAGTGAA-TGCTCTGCACATAAAAAGCcaggaact-ggactaaggtggggaaaatgagg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79729381 600 + 112192347 GAAAAAGAAA--GCCAACGAATAGATGTGAGTGGCTGGTGCTAGTTTTCATGCATCCTTATGCAAA--TGCACAGTGTGTTTCACTTCTATACCTGCCGCTCGATGGAGGTGTGGGGTAGCCAGTATTACAACCAAGAGTTTAGATCTGTGTTCCCCAAGCCCACGTAAATAGAACCACagctaccaattactgccgtttatcatgggcccctacaatttttgcacactctaccttggtt---cacacaaccaccctctgaggtgagtgacgttccttctagttcacaaatgaagaagcagaagtctctggtggttaaatggtgtctgcctgacatcacacagctagaagtggcagggctgggatgggaagtcttgtcat-ggtgtctatcctgcctccc-------aaagcactgtcattattttcaGATCCCTCTTAAAGTACTT-ATCACTCTTTCGCTGTATTGGTATTCTTTCAGAACATATCTTTCCCCTCCTATTAGGC------TCTAGAGGTTGGCATCCATATCTCTTCCTTCTCTTCATCCCCTGTAGGGTCTTAGTGAAATGCTCTGCTCAAAACAAGGcaggaact-ggactaaggtgaggaaaatgagg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80810245 600 + 112612857 GAAAAAGAAA--GCCAACGAATAGATGTGAGTGGCTGGTGCTAGTTTTCATGCATCCTTATGCAAA--TGCACAGTGTGTTTCACTTCTATACCTGCCGCTCGATGGAGGTGTGGGGTAGCCAGTATTACAACCAAGAGTTTAGATCTGTGTTCCCCAAGCCCACGTAAATAGAACCACAGCTACCAATAACTGCCGTTTATCATGGGCCCCTACAATTTTTGCACACTCTACCttggtt---cacacaaccaccctctgaggtgagtgacgttccttctagttcacaaatgaagaagcagaagtctctggtggtttaatggtgtctgcctgacatcacacagctagaagtggcagggctgggatGGGAAGTCTTGTCAT-GGTGTCTATCCTGCCTCCC-------AAAGCACTGTCATTATTTTCAGATCCCTCTTAAAGTACTT-ATCACTCTTTCGCTGTATTGGTATTCCTTCAGAACATATCTTTCCCCTCCTATTAGGC------TCTAGAGGTTGGCATCCATATCTCTTCCTTCTCTTCATCCCCTGTAGGGTCTTAGTGAAATGCTCTGCTCAAAACAAGGcaggaact-ggactaaggcgaggaaaacgagg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76859348 600 + 107442819 gaaaaataAA--GCCAACGAATGGGTGTGAGTGACTGGCGCTAGTTTTCATGCATCCTTATGCAAA--TGCACAGTGTGTTGCACTTCTATACCTGCCGCTCAATGGAGGTGTGGGGTAGCCAGTATTACAACCAAGAGTTTAGATCTGTGTTCCCCAAGCCCACGTAAATAGAACCACAGCTACCAATTACTGCCGTTTATCATGGGCCCCTACAATTTTTGCACACTCTACCTTGGTT---CACACAACCACCCTCTGAGGTGAGTGACATTCCTTCTAGTTCACAAATGAAGAAGCAGAAGTGTCTGGTGGTTAAATGGTGTCTGCCTGACATCACACAGCTagaagtggcagggctgggatggGAAGTCTTGTCAT-GGTGTCTatcctgcctccc-------aaagcactgtcATTATTTTCAGATCCCTCTTAAAGTACTT-ATCACTCTTTCGCTGTATTGGTATTCTTTCAGAACATATCTTTCCCCTCCTATTAGGC------TCTAGAGGTTGGCATCCatatctcttccttctcttcatccCCTGTAGGGTCTTAGCGAAATGCTCTGCACAAAACAAGCCAGGAACT-GGACTaaggtgaggaaaatgagg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81122916 600 + 108555830 GAAAAAGAAA--GCCAACGAATGGATGTGAGTGACTGGTGCTAGTTTTCATGCATCCTTATGCAAA--TGCACAGTGTGTTGCACTTCTATACCTGCCACTCAATGGAGGTGTGAGGTAGCCAGTATTACAACTAAGAGTTTAGATCTGTGTTCCCCAAGCCCACGTAAATAGAACCACagctaccaattactgccgtttatcatgggcccctacaatttttgcacactctaccttggtt---cacacaaccaccctctgaggtgagtgacattccttctagttcacaaatgaagaagcagaagtctctggtggttaaatggtgtctgcctgacatcacacagctagaagtggcagggctgggatgggaagtcttgtcat-ggtgtctatcctgcctccc-------aaagcactgtcattattttcaGATCCCTCTTAAAGTACTT-ATCACTCTTTTGCTGTATTAGTATTCTTTCAGAACATATCTTTCCCCTCCTATTAGGC------TCTAGAGGTTGGCATCCATATCTCTTCCTTCTCTTCATCCCCTGTAGGGTCTTAGTGAAATGCTCTGCACAAAACAAGCcaggaact-ggactaaggtgaggaaaatgagg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111345009 599 - 210400635 GAAAAAGAAA--GCCAATGAACAGATGTGAGTGGCTGGCCCTATTTTCCATGCATCCTTAAGCAAA--TGCACAGTATCTTGCATTCCCATACCTGCCTCTCTCTGGAGGTGTGGGATAGCCAGTATCACAACCAAGGGTTTAGATCTGTGTTCCCCAGGCCCACTTAAATAGAACCATGGCTACCAATGACTGCcacttatcatgggactctacaatttttgcacattttaccttggtt---cacagaaccaccctctgaggtgagtgacattcctcctagttcacaaatgaggaagcagaaatctctggtgtttaagtggtgtctacctgatgttacacagctagaagtggcaaggctggTGTGGGAAGTCTTGTCAT-GGT-TCTATTCTGCCTCCT-------GAAGCACTGACATTATTTTCAGATCCCTCTTAAAGTATTTAACCACTCTTTCACTGTATTAGTATTCTTTCAGAACACATCTTTCCCCTTCTATTAGGC------TCTAGAGGTTGGCATCCATACCTCTTCCTTCTCTTCATCCCCTGTA-GGTCTTAGTGAAATGCTCTGCACATAACAAGCcaggaact-ggactaaggtgtggaaaatgagg i calJac3.chr1 C 0 C 0 s canFam3.chr1 35244808 599 - 122678785 AAAAAAGAAATGGCCAAATAGTGGATGGGGATGTCTGGCTATAGTCCTCATGCATTCTTGGGAAAATGTGCATAACTTGTTGCATTTCTGTTGCCTTCTCCCTAGGGAGCTATGTGATGGCCAGTGTCATGACTGAGACTTTAAATCTGTGTTCCCCAGGCCTGCTTAGGC-------------CCCACCGCTGTCATTTATTTTGAGTCCATCTG--TGttacacacattactttgtcttaccacacaatcaccttctgaggtggg-gacgttctctccaggtcacggatgaggagatggtagtctctcatggtcaagtg--gtctgcctggtgttacccagctggaagtggcaaagcgaggGCAAGAGG-CTTAGCGT-GGTGTCTGTCCTGCCTCACTACTCTTGAAGTGCTGTCATTATTTTGGAACTTCTCTTAAAACATTT-ATTGCTCTTTTGCTTTATTGGCCTTATTCTAGAACATG--TTTTCCCTCCTATTATGCTATGATTCTAGATGTTAGCATCCACCTTTCTTCCTTCTCTGAATCCACTATA-TGCCTTTGCACAATGCTCTGCGCATAATCAACGagggcctgggaccaggctgaggcatgcaagg i canFam3.chr1 I 227 C 0 e mm10.chr19 38000294 2056 - 61431566 I a score=215741.000000 s hg38.chr9_GL383541v1_alt 37478 65 + 171286 cattctc-----cttgggtgcaaaatttaagatggtgcc--aaaaa----tcaaatgatcaagataaataatattt s panTro4.chr9 68602982 65 + 137840987 cattctc-----cttgggtgcaaaatttaagatggtgcc--aaaaa----tcaaatgatcaagataaataatattt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64756039 65 + 135191526 cgttctc-----cttgggtgcaaaatttaagatgatgcc--aaaaa----tcaaatgatcaagataaataatattt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57796229 65 - 122973662 cattctc-----tttgggtgcaaaatttaagatggtgcc--aaaaa----tcaaatgatcaagataaataatattt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79729981 65 + 112192347 cattctc-----cttgggtgcaaaatttaagagggtgcc--aaaaa----tcaaaggaacaagaaaaataatattt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80810845 65 + 112612857 cattctc-----cttgggtgcaaaatttaagagggtgcc--aaaaa----tcaaaggaacaagataaataatattt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76859948 65 + 107442819 cattCTC-----CTTGGGTGCAAAATTTAAGATGGTGCC--AAAAA----TCAAAGGaacaagataaataatattt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81123516 65 + 108555830 cattctc-----cttgggtgcaaaatttaagatggtccc--aaaaa----tcaaatgaacaagataaataatattt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111345608 60 - 210400635 cattctc-----cttagatgcaaattttaagatggtgcc--gaaaa----tctagt-----agtcaaacaatattt i calJac3.chr1 C 0 C 0 s mm10.chr19 38002350 74 - 61431566 CATTCTCGTTCTcttgggtgtgatgtagaaagcgctgtc--aaaaaaaatctcagtgcccaaaatcagtaatgttt i mm10.chr19 I 2056 C 0 s canFam3.chr1 35245407 67 - 122678785 ccttcat-----cttgtgtgcacaagtaaagaagacaccgtaaaaa----gccactcatcaagatacataatattt i canFam3.chr1 C 0 I 1013 a score=25599.000000 s hg38.chr9_GL383541v1_alt 37543 7 + 171286 taataca s panTro4.chr9 68603047 7 + 137840987 taataca i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64756104 7 + 135191526 taatgca i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57796294 7 - 122973662 taatgca i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79730046 7 + 112192347 taatgca i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80810910 7 + 112612857 taatgca i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76860013 7 + 107442819 taatgca i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81123581 7 + 108555830 taatgca i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111345668 7 - 210400635 taacaca i calJac3.chr1 C 0 C 0 s mm10.chr19 38002424 7 - 61431566 taatgca i mm10.chr19 C 0 C 0 e canFam3.chr1 35245474 1013 - 122678785 I a score=852346.000000 s hg38.chr9_GL383541v1_alt 37550 233 + 171286 ct-attt---aaaaactcaaaattaatgcaaaaattccatgatgagcaaaatgacaaaattttaaatgaaaacagAGATGGCTTCTGATCCTGCAGTTGG------------------------------------CTCACCCTAGTCCCAGTCCTGTAAAAAGCACTGAAAACTTGTTGAATGTATAGGTTGTAGAATTGGTGTTTGGCTCTCGTGAGCTAAACATGTGATTAAGTATCCAGTGAAATGCTGCCATTCA-----GAACTCATGGATG s panTro4.chr9 68603054 233 + 137840987 ct-attt---aaaaactcaaaattaatgcaaaaattccatgatgagcaaaatgacagaattttaaatgaagacagAGATGGCTTCTGATCCTGCAGTTGG------------------------------------CTCACCCTAGTCCCAGTCCTGTAAAAAGCACTGAAAACTTGTCGAATGTATAGGTTGTAGAATTGGTGTTTGGCTCTCATGAGCTAAACATGTGATTAAGTATCCAGTGAAATGCTGCCATTCA-----GAACTCATGGATG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64756111 233 + 135191526 ct-attt---aaaaactcaaaaataatgcaaaaattccatgatgagcaaaatgacaaaattttaaatgaagacagAGATGGCTTCTGATCCTGCAGTTGG------------------------------------CTCACCCTAGTCCCAGTCCTGTAAAAAGCACTGAAAACTTGTCGAATGTATAGGTTGTAGAATTGGTGTTTGGCTGTTGTGAGCTAAACATATGATTAAGTATCCGGTGAAATGCTGCCATTCA-----GAACTCATGGATG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57796301 231 - 122973662 ct-attt---aaagactcaaaattcatgcaaaaattccatgatgagcaaaataacaaaattttaaatgaagacagAGATGGCTTCTGATCCTGCAGTTGG------------------------------------CTCACCCCAGTCCCAGTCCTGTAAGAAGCTCTGAAAACTTGTCGAATGTATAGGTTGTAGAATTGGTGTTTGGCTCTCGTGAGCTAAACA--TGATTAAGTATCCAGTGAAATGCTGCCATTCA-----GAACTCATGGATG i nomLeu3.chr1a C 0 I 1 s rheMac3.chr15 79730053 233 + 112192347 ct-attt---aaaaactcaaaattaatgcaaacattccatgatgagcaaaataacaaacttttaaatgaagacagAGATGGCTTCTGACCCTGCAGTTGG------------------------------------CCCACCCTAGTCCCAGTCCTGTAAGAAGCACTGAAAACTTGTCGAATGTATAGGTTGTAGAATTGGTGTTTGGCTCTCGTGAGCAGAACATATGAGTAAGTATCCAGTGAAATGCTGCCATTCA-----GAACTCATGGATG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80810917 233 + 112612857 ct-attt---aaaaactcaaaattaatgcaaacattccatgatgagcaaaataacaaacttttaaatgaagacagAGATGGCTTCTGACCCTGCAGTTGG------------------------------------CCCACCCTAGTCCCAGTCCTGTAAGAAGCACTGAAAACTTGTCGAATGTATAGGTTGTAGAATTGGTGTTTGGCTCTCGTGAGCAGAACATATGAGTAAGTATCCAGTGAAATGCTGCCATTCA-----GAACTCATGGATG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76860020 233 + 107442819 ct-attt---aaaaactcaaaattaatGCAAACATTCCATGATGAGCAAAATAACAAACTTTTAAATGAAGACAGAGATGGCTTCTGACCCTGCAGTTGG------------------------------------CCCACCCTAGTCCCAGTCCTATAAGAAGCACTGAAAACTTGTCGAATGTATAGGTTGTAGAATTGGTGTTTGGCTCTCGTGAGCAGAACATATGAGTAGGTATCCAGTGAAATGCTGCCATTCA-----GAACTCATGGATG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81123588 233 + 108555830 ct-attt---aaaaactcaaaattaatgcaaacattccatgatgagcaaaataacaaacttttaaatgaaggcagAGATGGCTTCTGACCCTGCAGTTGG------------------------------------CCCACCCTAGTCCCAGTCCTGTAAGAAGCACTGAAAACTTGTCGAATGTATAGGTTGTAGAATTGGTGTTTGGCTCTCGTGAGCAGAACATATGAGTAAGTATCCTGTGAAATGCTGCCATTCA-----GAACTCATGGATG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111345675 232 - 210400635 ct-attt---aaaaacgcaaaattaatgtaaaaattccataatgagcaaaatagcaaaattttaaatgaagacagAGATAGTTTCTGATCCTGCAGCTGG------------------------------------TTCACCTTAGTCCCAGTTCTGTAAGAAGCACTGAAAACTTGTTGAATGTATAGGTTGTAGAATTGGTGTTTCGCTCTTGTAAGCTAAACATATGATTAAGTATCCAGTAAAATGCTG-CATTCA-----GAACCCGCAGATG i calJac3.chr1 C 0 C 0 s mm10.chr19 38002431 264 - 61431566 ctaattt---aaaaactcaaatttagtgcaaaatt----aggtcaacaaggaatcagaatttcaaatgaacacC------ATTTCTAACCCAACACGTGGTGGTGCATACCCCTGCCTTCCCCCTCCCTCCCTTCTCTCATCCCAGCCCTAACCCTGCGAAGAGGATTTACAACTAATTGAATGAATGGG-CATAAAATCAGCGTTTGGCTCATGTGAGCTAAATTCAGGATTAACGATCTAATGAAATGTATTTAGTCAGAACTGAACTCACTGATG i mm10.chr19 C 0 C 0 s canFam3.chr1 35246487 233 - 122678785 ct-atttaACAaaaatataaaagtaatgcaaaaattccactatggataaaatactaaaattttaaataaagaTGG-------TCTTCACTCTGCACTTGG-------------------------------CCTTTCTTGCCTGGTCCCCAGCCCTATAGGAA-CACTTAAAACATGCTGAACAAATGGATTGTAGAGTTGGTGTCTGGCTCATGTGAGCTAAATCTGCCATTAACAATCCAGTGAAACATTACCATTCA-----AAGCTCATTGATG i canFam3.chr1 I 1013 I 194 a score=1123850.000000 s hg38.chr9_GL383541v1_alt 37783 333 + 171286 AATCAGGTGGACTAAAACCCTTGGCCTTTCCTGTTGTCCATCTGACCATGAAGATGTTGATTCAGCTGTAATGGGATTCAGCTGTAATGGGATTCAGCTGTAATGGTCA----CACCCAAGCCTTGAAGAATGGCCAG-AGTCC------AGCTTCCCTACCAGCCTGAGCAGCAGTCTACCCAATAGGGAGAGTTTTCTTAACAG---AAGTTTAAATTAA-------AAACTGCCATTGGTTGTCTAAGATTTTGAAATTTCTATGCTTGC---TGTTTCATTTTGTCA---TTTTTCC--------TCTTTTCTGAT-TTTTTTTAATTT------------------CAAAAAATCAGAGTA------------GT---------------------------------TGTTTT------------------------GGAAGGATAC---ACT-- s panTro4.chr9 68603287 333 + 137840987 AATCAGGTGGACTAAAACCCTTGGCCTTTCCTGTTGTCCATCTGACCATGAAGATGTTGATTCAGCTGTAATGGGATTCAGCTGTAATGGGATTCAGCTGTAATGGTCA----CACTCAAGCCTTGAAGAACGGCCAG-AGTCC------AGCTTCCCTACCAGCCTGAGCAGCAGTCTACCCAATAGGGAGAGTTTTCTTAACAG---AAGTTTAAATTAA-------AAACTGCCATTGGTTGTCTAAGATTTTGGAATTTCTATGCTTGC---TGTTTCATTTTGTCA--TTTTTTCC--------TCTTTTCTGA--TTTTTTTAATTT------------------CAAAAAATTAGAGTA------------GT---------------------------------TGTTTT------------------------GGAAGGATAC---ACT-- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64756344 316 + 135191526 AATCAGGTGGACTAAAACCCTTGGCCTTTCCTGTTGTCCATCTGACCATGAAGATGTT----------------GATTCAGCTGTAATGGGATTCAGCTGTGATGGTCA----CGCCCAAGCCTTGAAGAATGGCCAG-AGTCC------AGCTTCCCTACCAGCCTTAGCAGCAGTCTACCCAATAGGGAGAGTTTTCTTAACAG---AAGTTTAAATTAA-------AAACTGCCATTGGTTGTCTAAGATTTTGAAATTTCTATGCTTGC---TGTTTCATTTTGTCA---TTTTTCC--------TCTTTTCTGA--TTTTTTTAATTT------------------CAAAAAATCAGAGTA------------GT---------------------------------TGTTTT------------------------GGAAGGATAC---ACT-- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57796533 332 - 122973662 AATCAGGTGGACTAAAACCCTTGGCCTTTCCTGTTGGCCATCTTACCATGAAGATGTTGATTCAGCTGTAATGGGATTCAGCTGTAATGGGATTCAGCTGTAATGGTCA----TGCCCAAGCCTTGAAGAATGGCCAG-AGTCC------AGCTTCCCTACGAGCCTTAGCAGCAGTCTACCCAATAGGGAGAGTTTTCTTAACGG---AAGTTTAAATTAA-------AAACTGCCATTGGTTGTCTAAGATTTTGAAATTTCTATGCTTGC---TGTTTCATTTTGTCA---TTTTTCC--------TCTTTTCTGA--TTTTTTTAATTT------------------CAAAAAATCAGAGTA------------GT---------------------------------TGTTTT------------------------GGAAGGATAC---ACT-- i nomLeu3.chr1a I 1 C 0 s rheMac3.chr15 79730286 357 + 112192347 AATCAGGTGGACTAAAACCCTTGGCCTTTCCTGTTGTCCATCTGACCATGAAGATGTTGATTCAGCTGTAATGGGATTCAGCTGTAATAGGATTCAGCTGTAATGGTCA----CGCCCAAGCCTTGAAGAATGGCCAG-AGTCC------AGCTTCCCTACCAGCCTTAGCAGCAGTCTACCCAATAGGGAGAGTTTTCTTAACAG---AAGTTTAAATTAA-------AAACTGCCATTGGTAGTCTAAGATTTTGAAATTTCTATGCTTGC---TGTTTCATTTTGTCA--TTTTTTCC--------CCTTTCCTGA--TTTTTTTAATTT------------------CAAAAAATCAGAGTA------------GTTGTTTTGGAAGGATACACTGATATATACGTATGTGTTTT------------------------GGAA-------------- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80811150 324 + 112612857 AATCAGGTGGACTAAAACCCTTGGCCTTTCCTGTTGTCCATCTGACCATGAAGATGTTGATTCAGCTGTAATGGGATTCAGCTGTAATAGGATTCAGCTGTAATGGTCA----CGCCCAAGCCTTGAAGAATGGCCAG-AGTCC------AGCTTCCCTACCAGCCTTAGCAGCAGTCTACCCAATAGGGAGAGTTTTCTTAACAG---AAGTTTAAATTAA-------AAACTGCCATTGGTAGTCTAAGATTTTGAAATTTCTATGTTTGC---TGTTTCATTTTGTCA--TTTTTTCC--------CCTTTCCTGA--TTTTTTTAATTT------------------CAAAAAATCAGAGTA------------GT---------------------------------TGTTTT------------------------GGAA-------------- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76860253 332 + 107442819 AATCAGGTGGACTAAAACCCTTGGCCTTTCCTGTTGTCCATCTGACCATGAAGATGTTGATTCAGCTGTAATGGGATTCAGCTGTAATGGGATTCAGCTGTAATGGTCA----CGCCCAAGCCTTGAAGAATGGCCAG-AGTCC------AGCTTCCCTACCAGCCTTAGCAGCAGTCTACCCAATAGGGAGAGTTTTCTTAACAg---aagtttaaattaa-------aaactgcCATTGGTAGTCTAAGATTTTGAAATTTCTATGCTTGC---tgtttcattttgtca--tttttttcttttttgtcatttcctga--tttttttaattt------------------caaaaaatcagagta------------gT---------------------------------TGTTTT------------------------GGAA-------------- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81123821 333 + 108555830 AATCAGGTGGACTAAAACCCTTGGCCTTTCCTGTTGTCCATCTGACCATGAAGATGTTGATTCAGCTGTAATGGGATTCAGCTGTAATGGGATTCAGCTGTAATGGTCA----CGCCCAAGCCTTGAAGAATGGCCAG-AGTCC------AGCTTCCCTACCAGCCTTAGCAGCAGTCTACCCAATAGGGAGAGTTTTCTTAACAG---AAGTTTAAATTAA-------AAACTGCCATTGGTAGTCTAAGATTTTGAAATTTCTATGCTTGC---TGTTTCATTTTGTCA--TTTTTTCC--------CCTTTCCTGA--TTTTTTTAATTT------------------CAAAAAATCAGAGTA------------GT---------------------------------TGTTTT------------------------GGAAGGATAC---ACT-- i chlSab2.chr12 C 0 I 28 s calJac3.chr1 111345907 326 - 210400635 AATCAGGTGGACTGAAGTCCTTGGCCTTTCCCGCTGTCCATCTGACCACAAAGATGTTGATTCAGCTCTAATGGAATCCAGCTGTAATGGGATGCAGCTGTAATGGTCA----TGCCCAAGCCTTGAAAAATGGCCAG-AGTCC------AGCTTCCCTACCAGCCTTAGCAGCAGTCTACCCAATAGGGGGAGTTAACTTAACAG---AAGTTTAAATTAA-------AAACTGCCATTGGTTGTCTAAGATTTTGAAATTTCTATGTTTGT---GTTTTCATTTTGTTA--TTTTTCCT--------CCTTTCTTGATATATTTTTACTTT------------------CAAGAAATCCGAGTA------------GT---------------------------------TGTTTT------------------------GGAA-------------- i calJac3.chr1 C 0 C 0 s mm10.chr19 38002695 352 - 61431566 GAGCCAGTGGATGGA--------TTCTTTCCTGCTGCTACTCTGTCCACGA--ATGTC--------------------------------GACTCAGCTGTAACAGTCG----TGTGGAAGCCTAGAAGAGTGGCCAGCAGCCCGTGGCTAGCTTTCCTAT-GGCCTGTACAGCACAC-----------GGGGCTTTTCTTAACAG---CTGCTTAA--TAAGAGGGGGAAAATGGTGTTGGATGTTT-CTACTATGAAGCATCTGTGGTTGCttttgttttgttttgttttgttttCTTC--------CTTTTCATGA--TTTTGTATATATTCCCCCACACGCACAACCTAAGAAATTATAATATAGCTATCCTTTGG---------------------------------TGTTTTCAAGGAGTTTGGTTCTAGAACCCAGAGAGGATGCCAAACT-- i mm10.chr19 C 0 I 29 s canFam3.chr1 35246914 310 - 122678785 AATCAGATGGACTAAAGTTCTTGTCCTTTCTTGCTGTCAGTCTGTCCATGAAGATGTT--------------------------------GGTTCAGCTGTGCTGGTCACTCCCACCCAAGCCTGGAAGGGCCACCAG-AGTCC------AGCTTCCCTTCTAGCCTTAGCAGCGGTCGACCCACCAGGGAGAGTTTTCTTAGAAGCTCAGCTCTAAATTAA-------AAACTGCCTTTGGTTGTCTAAGAGTCTGAAGTTCCTGAAATTGC---TCTTTCATTTTGTTA--TTTTCTCT--------CCCTCCCTTA--GTCTTGTTATTT------------------CCAGAAATCAGAATA------------GT---------------------------------TGTTTT------------------------GAAAGGACAG---ACTAT i canFam3.chr1 I 194 C 0 a score=64063.000000 s hg38.chr9_GL383541v1_alt 38116 24 + 171286 TGGATACACTGATATATACATATG s panTro4.chr9 68603620 24 + 137840987 TGGATACACTGATATATACATATG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64756660 24 + 135191526 TGGATACACTGATATATACATATG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57796865 24 - 122973662 TGGATACACTGATATATACATATG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79730643 23 + 112192347 -GGATACACTGATATATACATATG i rheMac3.chr15 C 0 I 12 s macFas5.chr15 80811474 23 + 112612857 -GGATACACTGATATATACATATG i macFas5.chr15 C 0 I 8 s papAnu2.chr15 76860585 23 + 107442819 -GGATACActgatatatacatatg i papAnu2.chr15 C 0 I 12 s calJac3.chr1 111346233 23 - 210400635 -GGATAGACTGATAGACGCATATG i calJac3.chr1 C 0 C 0 s mm10.chr19 38003076 24 - 61431566 tgcatgtactgctgggtgcattaa i mm10.chr19 I 29 I 3 s canFam3.chr1 35247224 24 - 122678785 GAGATATATAAATACTTGCATTTG i canFam3.chr1 C 0 C 0 e chlSab2.chr12 81124154 28 + 108555830 I a score=44179.000000 s hg38.chr9_GL383541v1_alt 38140 37 + 171286 AGATGTATa----------cac-------------acacacacacaca---------------------------------------------------------cacTATCTCTTT s panTro4.chr9 68603644 33 + 137840987 ATATGTAT---------------------------ACACACACACACA---------------------------------------------------------CACTATCTCTTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64756684 49 + 135191526 ATATGTaca----------cac-------------acacacacacaca------------------------------------------cacacaca---cactcacTATCTCTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57796889 51 - 122973662 ATATGTATa----------cac-------------acacacacacaca----------------------------------------cacacacaca---cacacacaATCTCTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79730678 37 + 112192347 acacacaca----------cac-------------acacaaacacaca---------------------------------------------------------cacTATCTCTTT i rheMac3.chr15 I 12 C 0 s macFas5.chr15 80811505 37 + 112612857 acacacaca----------cac-------------acacaaacacaca---------------------------------------------------------cacTATCTCTTT i macFas5.chr15 I 8 C 0 s papAnu2.chr15 76860620 37 + 107442819 acacacaca----------cac-------------acacaaacacaca---------------------------------------------------------cactatcTCTTT i papAnu2.chr15 I 12 C 0 s chlSab2.chr12 81124182 37 + 108555830 acacacaca----------cac-------------acacaaacacaca---------------------------------------------------------cacTATCTCTTT i chlSab2.chr12 I 28 C 0 s calJac3.chr1 111346256 31 - 210400635 ------ATG----------TAC-------------ATACACACACATA---------------------------------------------------------TACTATTTCTTT i calJac3.chr1 C 0 C 0 s mm10.chr19 38003103 117 - 61431566 acgtgtagatggctcacagcacttagcatggtgtgacacctgcagacaggctgtattgtttagggagtagtgacgaggaacagatttgaacacgtttagtccagtcacaatttgttt i mm10.chr19 I 3 I 108 s canFam3.chr1 35247248 32 - 122678785 ---TGTata----------gat-------------agataggtagata----------------------------------------------------------gataTCTCTT- i canFam3.chr1 C 0 C 0 a score=1078387.000000 s hg38.chr9_GL383541v1_alt 38177 304 + 171286 ATATATTTATCTATGTCTCC--------------TCTACCATTCCCAGCCCTCTACCAG---------GGCAAT-AGGAGCTCAGTAAATATTTTTGAGT-TATTAATTGAAGGATCGTAAGAGATGAGCTATAGGAAAAAGA-A-AG-----TTT--TTTAGGTTTGAGCATACTAAATCTATATCT-AAGTCACCACCATAATTTATAGCTAAC-----AAAAAGCTTTATACC----AAACAAAAAGATCAGATCAGCAGGTCTAATTTGCTTCCATT-----TAAACCCATTTTTCCATGCTGTTTTCATTGTTTGTATTTGGGAC----ACT----ACTTAGCCAGATGAGGGAAT s panTro4.chr9 68603677 313 + 137840987 ATATATTTATCTATGTCTCC--------------TCTACCAttcccagccctctaccagggctagggaggcaat-aggagctcagtaaatatttttgagt-TATTAATTGAAGGATTGTAAGAGATGAGCTATAGGAAAAAGA-A-AG-----TTT--TTTAGGTTTGAGCATACTAAATCTATATCT-AAGTCACCACCATAATTTATAGCTAAC-----AAAAAGCTTTATACC----AAACAAAAAGATCAGATCAGCAGGTCTAATTTGCTTCCATT-----TAAACCCATTTTTCCATGCTGTTTTCATTGTTTGTATTTGGGAC----ACT----ACTTAGCCAGATGAGGGAAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64756733 314 + 135191526 ATATATTTATCTATGTCTCC--------------TCTACCAttcccagccctctaccagggctagggaggaaat-aggagctcagtaaatatttttgagt-TATTAATTGAAGGATTGTAAGAGATGAGCTATAGGAAAAAGA-ATAG-----TTT--TTTAGGTTTGAGCATACTAAATCTATATTT-AAGTCATCACCATAATTTATAGCTAAC-----AAAAAGCTTTATACC----AAACAAAAAGATCAGATCAGCAGGTCTAATTTGCTTCCATT-----TAAACCCATTTTTCCATGCTGTTTTCATTGTTTGTATTTGGGAC----ACT----ACTTAGCCAGATGAGGGAAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57796940 314 - 122973662 ATATAtttatctatgtttcc--------------tctaccattcccagccctctaccagggctagggagacaat-aggagctcagtaaatatttttgagt-TATTAATTGAAGGGTTGTAAGAGATGAGCTATAGGAAAAAGA-ATCG-----TTT--TTTAGGTTTGAGCATACTAAATCTATATCT-AAGTCACCACCATAATTTATAGCTAAC-----AAAAAGCTTTATGCC----AAACAAAAAGATCAGATCAGCAGGTCTAATTTGCTTCCATT-----TAAACCCATTTTTCCATGCTGTTTTCATGGTTTGTATTTGGGAC----ACT----ACTTAGCCAGATGAGGGAAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79730715 313 + 112192347 ATACATTTATCTGtgtctcc--------------tctaccattcccagccctctaccagggctagggagacaat-aggagctcagtaaatatttttgagt-TATTAATTGAAGGATTGTAAGAGATGAGCTATAGGAAAAAGA-ATAG-----TTT--TTTAGGTTTGAGCATACTAAATCTATATCT-AAGTCACCACCATAATTTATAGCTGAC-----AAAAAGCTTTATACC----AAAC-AAAAGATCAGATCGTCAGGTCTAATTTGCTTCCATT-----TAAACCCATTTTTCCGTGCTGTTTTCATTGTTTGTATTTGGTAC----ACT----ACTTAGCCAGATGAGGGAAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80811542 313 + 112612857 ATacatttatctgtgtctcc--------------tctaccattcccagccctctaccagggctagggagacaat-aggagctcagtaaatatttttgagt-TATTAATTGAAGGATTGTAAGAGATGAGCTATAGGAAAAAGA-ATAG-----TTT--TTTAGGTTTGAGCGTACTAAATCTATATCT-AAGTCACCACCATAATTTATAGCTGAC-----AAAAAGCTTTATACC----AAAC-CAAAGATCAGATCGTCAGGTCTAATTTGCTTCCATT-----TAAACCCATTTTTCCGTGCTGTTTTCATTGTTTGTATTTGGTAC----ACT----ACTTAGCCAGATGAGGGAAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76860657 314 + 107442819 ATACATTTATCTGTGTCTCT--------------TCTACCATTCCCAGCCCTCTACCAGGGCTAGGGAGACAAt-aggagctcagtaaatatttttgagt-tattAATTGAAGGATTGTAAGAGATGAGCTATAGGAAAAGGA-ATAG----tttt--tttAGGTTTGAGCATACTAAATCTATATCT-AAGTCACCACCATAATTTATAGCTGAC-----AAAAAGCTTTATACC----AAAC-AAAAGATCAGATCGGCAGGTCTAATTTGCTTCCATT-----TAAACCCAtttttccatgctgttttcattgttTGTATTTGGTAC----ACT----ACTTAGCCAGATGAGGGAAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81124219 313 + 108555830 ATacatttatctgtatctcc--------------tctaccattcccagccctctaccagggctagggagacaat-aggagctcagtaaatatttttgagt-TATTAATTGAAGGATTGTAAGAGATGAGCTATAGGAAAAAGA-ATAG-----TTT--TTTAGGTTTGAGCGTACTAAATCTACATCT-AAGTCACCACCATAATTTATAGCTGAC-----AAAAAGCTTTATACC----AAAC-AAAAGATCAGATCAACAGGTCTAATTTGCTTCCATT-----TAAACCCATTTTTCCGTGCTGTTTTCATTGTTTGTATTTGGTAC----ACT----ACTTAGCTAGATGAGGGAAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111346287 308 - 210400635 CTATGTTTATCCATGTCTCC--------------TCTACCATTCCTGGCCTTCCACCAGAGCTGGAGAGACAAT-AGTAACTC----AATATTTTTGACT-TATTAATTGAAGGATTGTAGGAGATGAGCCATAGGAAAAAGA-ATAGTATTTTTT--TCTAAGTTTGAGCGTATTAAATCTCTATCT-AAGT---TACTATGCTTTAGAGCTAAC-----AAAAAGGTTTATAAC----AAAC----AGATTACATCGGCAGGTCTAATTTGCTTTCATT-----TAAACCCATTTTTCCACGCTGTTTTCATTGTTTGTATGTGGGAC----ATT----ACTCAGCCAGATGAGGGAAT i calJac3.chr1 C 0 C 0 s mm10.chr19 38003328 320 - 61431566 AAATATATATGTACATCTTCATAGACTATGACTTCCTACCATATGCACCCCACCACCAGGGGCAGGAAG----T-ATAAGCTTAGTAAA-ATTT------------------GGACTGTTGGAGATAGAAGGTAGGAAAAAAACATGG-----TTTAGTTTAATTCGGATTAAATTAAATCTG------AAGTCACCACTATGTTTTATAGTCAACTTTTTAATAGTCCTCTTGCCTTGTAGAC--AAAGAGAAGGACAGCATGCCTAATTTGCTTTCATTTAAGCTAAGCCCATTTTTGCATGCTGTTCTCATTGTTAGTGTTCGGTACTCAAAAG----ACCTAGACAAATGTGGGAAT i mm10.chr19 I 108 I 4882 s canFam3.chr1 35247280 290 - 122678785 ------------------------------------GGCTGTTCCCACCCCTCCACCAGGGTGAGGTAGATAACAAGAAGCAGAGTAAATATTTGTGAATCTATTATTT---GGATCCTAGGAGATGGACTGTAGGAGAAAGA-AGGG----------TTTGATTTTGAGCATACTATGTTTATATCTGAAGTCACTGTTATGTGTCACAGCCAGC-----AAAAAGCTTTATACC----CAACAAAAAGATCAGCAGGTCAGATTTACTTTCATTTCATT-----TCAGCCTGTTTCTCCATGCTGTTTTCACTCTCTG--TTTGGGAC----ATTGAAGACTTAGCCAAATGAGGAAT- i canFam3.chr1 C 0 C 0 a score=45771.000000 s hg38.chr9_GL383541v1_alt 38481 21 + 171286 CTGTA-----------------------AGTGAAATGG------------------------------------------------------------------------------ACTTGC s panTro4.chr9 68603990 21 + 137840987 CTGCA-----------------------AGTGAAATGG------------------------------------------------------------------------------ACTTGC i panTro4.chr9 C 0 I 213 s ponAbe2.chr9 64757047 21 + 135191526 CTGTA-----------------------AGTGAAATGG------------------------------------------------------------------------------ACTTGC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57797254 21 - 122973662 CTGTA-----------------------AGTGAAATGG------------------------------------------------------------------------------ACTTGC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79731028 21 + 112192347 CTGTA-----------------------AGTGAAATGG------------------------------------------------------------------------------ACTTGC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80811855 21 + 112612857 CTGTA-----------------------AGTGAAATGG------------------------------------------------------------------------------ACTTGC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76860971 21 + 107442819 CTGTA-----------------------AGTGAAATGG------------------------------------------------------------------------------ACTTGC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81124532 21 + 108555830 CTGTA-----------------------AGTGAAATGG------------------------------------------------------------------------------ACTTGC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111346595 21 - 210400635 CTGTA-----------------------AGTGGAATGG------------------------------------------------------------------------------ACTCAC i calJac3.chr1 C 0 C 0 s canFam3.chr1 35247570 122 - 122678785 CTGCAGTCATACTGTTGTCCATACTAACAATGAGATGGGAGTTCAGGGTCTAAGTGCACACTGAGCAGCTTCTTCTCTCAGCTGACAGGCTCAATTAAGTGACCACTTCCATGGGAACTTTC i canFam3.chr1 C 0 C 0 e mm10.chr19 38003648 4882 - 61431566 I a score=4032.000000 s hg38.chr9_GL383541v1_alt 38502 3 + 171286 -ACT s ponAbe2.chr9 64757068 3 + 135191526 -ACT i ponAbe2.chr9 C 0 I 216 s nomLeu3.chr1a 57797275 3 - 122973662 -ACT i nomLeu3.chr1a C 0 I 212 s rheMac3.chr15 79731049 3 + 112192347 -ACT i rheMac3.chr15 C 0 I 216 s macFas5.chr15 80811876 3 + 112612857 -ACT i macFas5.chr15 C 0 I 212 s papAnu2.chr15 76860992 3 + 107442819 -ACT i papAnu2.chr15 C 0 I 212 s chlSab2.chr12 81124553 3 + 108555830 -ACT i chlSab2.chr12 C 0 I 216 s calJac3.chr1 111346616 3 - 210400635 -ACT i calJac3.chr1 C 0 I 215 s canFam3.chr1 35247692 3 - 122678785 GTC- i canFam3.chr1 C 0 C 0 e mm10.chr19 38003648 4882 - 61431566 I e panTro4.chr9 68604011 213 + 137840987 I a score=91.000000 s hg38.chr9_GL383541v1_alt 38505 1 + 171286 T s canFam3.chr1 35247695 1 - 122678785 T i canFam3.chr1 C 0 C 0 e mm10.chr19 38003648 4882 - 61431566 I e chlSab2.chr12 81124556 216 + 108555830 I e ponAbe2.chr9 64757071 216 + 135191526 I e rheMac3.chr15 79731052 216 + 112192347 I e calJac3.chr1 111346619 215 - 210400635 I e papAnu2.chr15 76860995 212 + 107442819 I e macFas5.chr15 80811879 212 + 112612857 I e nomLeu3.chr1a 57797278 212 - 122973662 I e panTro4.chr9 68604011 213 + 137840987 I a score=-4764.000000 s hg38.chr9_GL383541v1_alt 38506 4 + 171286 -------------------------------------------CTGC---- s nomLeu3.chr1a 57797490 4 - 122973662 -------------------------------------------CTGA---- i nomLeu3.chr1a I 212 C 0 s macFas5.chr15 80812091 4 + 112612857 -------------------------------------------CTGA---- i macFas5.chr15 I 212 C 0 s papAnu2.chr15 76861207 4 + 107442819 -------------------------------------------CTGA---- i papAnu2.chr15 I 212 C 0 s canFam3.chr1 35247696 51 - 122678785 CTCCTCAAAGACATGTCTCCCCAAAGTCAACAGAATCACAATGTTGAAAAC i canFam3.chr1 C 0 C 0 e mm10.chr19 38003648 4882 - 61431566 I e chlSab2.chr12 81124556 216 + 108555830 I e ponAbe2.chr9 64757071 216 + 135191526 I e rheMac3.chr15 79731052 216 + 112192347 I e calJac3.chr1 111346619 215 - 210400635 I e panTro4.chr9 68604011 213 + 137840987 I a score=2300.000000 s hg38.chr9_GL383541v1_alt 38510 1 + 171286 A s panTro4.chr9 68604224 1 + 137840987 A i panTro4.chr9 I 213 C 0 s ponAbe2.chr9 64757287 1 + 135191526 A i ponAbe2.chr9 I 216 C 0 s nomLeu3.chr1a 57797494 1 - 122973662 A i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79731268 1 + 112192347 A i rheMac3.chr15 I 216 C 0 s macFas5.chr15 80812095 1 + 112612857 A i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76861211 1 + 107442819 A i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81124772 1 + 108555830 A i chlSab2.chr12 I 216 C 0 s canFam3.chr1 35247747 1 - 122678785 G i canFam3.chr1 C 0 C 0 e mm10.chr19 38003648 4882 - 61431566 I e calJac3.chr1 111346619 215 - 210400635 I a score=275607.000000 s hg38.chr9_GL383541v1_alt 38511 88 + 171286 AGTT--------------------------------------AGAGACAAGAAAAGCCCTCA-GTGGTGTAACAGCCAGGAACTGGGCACAA-CAGTTTTTCTTCTTTCCTGTAAATGTGG---CCTTCTT s panTro4.chr9 68604225 88 + 137840987 AGTT--------------------------------------AGAGACAAGAAAAGCCCTCA-GTGGTGTAACAGCCAGGAACTGGGCAGAA-CAGTTTTTCTTCTTTCCTGTAAATGTGG---CCTTCTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64757288 88 + 135191526 AGTT--------------------------------------AGAGACAAGAAAAGCCCTCA-GTGGTGTAATAGCCAGGAACTGGGCAGAA-CAGTTTTTCTTCTTTCCTGTAAATGTGG---CCTTCTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57797495 88 - 122973662 AGTT--------------------------------------AGAGACAAGAAAAGCCCTCA-GTGGTGTAACAGCCAGGAACTGGGCAGAA-GAGTTTTTCTTCTTTCCTGTAAATGTGG---CCTTCTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79731269 85 + 112192347 AGTT--------------------------------------AGAGGCAAGAAAAGCCCTCA-GTGGTGTAACAGCCAGGAACTGGGCAGAA-CAGTTTTTCTTCTTTCCTGTAAATGTGG------TCTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80812096 85 + 112612857 AGTT--------------------------------------AGAGACAAGAAAAGCCCTCA-GTGGTGTAACAGCCGGGAACTGGGCAGAA-CAGTTTTTCTTCTTTCCTGTAAATGTGG------TCTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76861212 85 + 107442819 AGTT--------------------------------------AGAGACAAGAAAAGTCCTCA-GTGGTGTAACAGCCGGGAACTGGGCAgaa-cagtttttcttctttcctgtaaATGTGG------TCTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81124773 85 + 108555830 AGTT--------------------------------------AGAGACAAGAAAAGCCCTCA-GTGGTGTAACAGCCAGGAACTGGGCAGAA-CAGTTTTTCTTCTTTCCTGTAAATGTGG------TCTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111346834 88 - 210400635 AGTT--------------------------------------AGAGACAAGAGAAGCCCTCA--TGGTATAACAGCCAGGAACTGGGCAGAAGCGTTTTTTCTTCTTTCCTGTAAGTGTGG---CCTCCTT i calJac3.chr1 I 215 C 0 s canFam3.chr1 35247748 130 - 122678785 AGTTTCGGGTCCACAAATGGTCAGACTAGAAACTGAACCTTCAGAGGACAGGAATGCCCTTAGGTGCCATGCCAGTGAGGGATTGGGGAGAA-GAGTCCCTCTTCTTTCCTATCAGCATGGCTGCcttctt i canFam3.chr1 C 0 I 211 e mm10.chr19 38003648 4882 - 61431566 I a score=929251.000000 s hg38.chr9_GL383541v1_alt 38599 281 + 171286 AACTGGATCACCAGGGTTGGAGCTCTGGGTCTG-GCTGTTGAAGAGAAGGAGCTATTTCCATCAGAATAAATTCTTCTACTGCCTAGGTGTACTCTATATAAACAGGCACAATCTACAAAAACTTAGCAGTTTTCAGCAAAAACGGATTTTtttattcattcaacaagtatctactgagcatcttcagatgccaggtgatgggaactcaacagagagcaaaataataacatctgtctcacatggagcatcggttatggtgaggggaacttaaaataaatgac s panTro4.chr9 68604313 278 + 137840987 AACTGGAGCACCAGGGTTGGAGCTCTGGGTCTG-GCTGTTGAAGAGAAGGAGCTATTTCCATCAGAATAAATTCT---ACTGCCTAGGTGTACTCTATGTAAACAGGCACAATCTACAAAAACTTAGCAGTTTTCAGCAAAAACGGATTTTtttattcattcaacaagtatctaccgagcatcttcagatgccaggtgatgggaactcaacagagagcaaaataataacatctgtctcactgggagcatgggttatggtgaggggaacttaaaataaatgac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64757376 268 + 135191526 AACTGGTGTACCAGGGTTGGGGCTCTGGGTCTG-GCTGTTGAAGAGAAGGAGCTATTTCCATCAGAATAAATTCT-------------TCTACTCTATGTAAACAGGCACAATCTACAAAAACTTAGCAGTTTTCAGCAAAAACGGATTTTtttattcattcaacaaatatatactgagcatcttcaaatgccaggtgatgggaactcaacagagagcaaaataataacatctgtctcacatggagcatgggttatggtgaggggaacttaaaataaatgac i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57797583 281 - 122973662 AACTGGAGTACCAGGGTTGGAGCTCTGGGTCTG-GCTGTTGAAGAGACGGAGCTATTTCCATCAGAATAAATTCTTCTCCTGTCTAGGTGTACTCTATGTAAACAGGCACAATCTACAAAATCTTAGCAGTTTTCAGCAAAAATGGATTTTtttattcattcaacaaatatctgctgagcatcttcagatgccaggtgatgggaactcaacagagagcaaaataataatatctgtctcacatggagcacgggttatggtgaggggaacttaagataaatgac i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79731354 281 + 112192347 AACTGGAGCACCAGGGTGGGAGCTCTGGGCCTG-GCTGTTGAAGAGAAGGAGCTATTTCCATCAGAATGAATTCTTCTACTGCCTAGGTGTACTCTATGTAAACAGGCGCAATCTAGAAAAACTTAGCACTTTTCAGCAAAACCGAATTTTtttattcatttgacaaatatttactgagcatcttcagatgccaggtgctgggaactcaacagagagtaaaataataatatccgtctcacatggagcatgggttgtggtgaggggaacttaagataaatgac i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80812181 281 + 112612857 AACTGGAGCACCAGGGTTGGAGCTCTGGGCCTG-GCTGTTGAAGAGAAGGAGCTATTTCCATCAGAATGAATTCTTCTACTGCCTAGGTGTACTCTATGTAAACAGGCGCAATCTAGAAAAACTTAGCACTTTTCAGCAAAACCGAATTTTtttattcatttgacaaatatttactgagcatcttcagatgccaggtgctgggaactcaacagagagtaaaataataatatccgtctcacatggagcatgggttgtggtgaggggaacttaagataaatgac i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76861297 281 + 107442819 AACTGGAGCACCAGGGTTGGAGCTCTGGGCCTG-GCTGTTGAAGAGGAGGAGCTATTTCCATCAGAATGAATTCTTCTACTGCCTAGGTGTACTCTATGTAAACAGGCGCAATCTAGAAAAACTTAGCAGTTTTCAGCAAAACcgaatttttttattcattcgacaaatatttactgagcatcttcaGATGCCAGGTGCTGGGAACTCAACAgagagtaaaataataatatctgtcTCACATGGAACATGGGTTATGGTGAGGGGAACTTAAGATAAATGAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81124858 281 + 108555830 AACTGGAGCACCAGGGTTGGTGCTCTGGGTCTG-GCTGTTGAAGAGAAGGAGCTATTTCCATCAGAATGAATTCTTCTACTGCCTAGGTGTACTCTATGTAAACAGGTGTAATCTAGAAAAACTTAGCACTTTTCAGCAAAACCGAATTTTTGTattcatttgacaaatatttactgagcatcttcagatgccaggtgctgggaactcgacagagagtaaaataataatatccgtctcacatggagcatgggttatgatgaggggaacttaagataaatgac i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111346922 281 - 210400635 AACTGGAGCAGCAGAGTTGGAGCTCTGGGTCTG-GCTGTTGAAGAGAAGGAGCTATTTCCATCAGAATAAATTATTCTACTGCCTAAGCATACTCTTCCTAAATAGGCACAATCTAGAAAAACTTAGCAGTTTTGAACAAAACCAGATTTTtttattcattcgacaaatatctactgagcatcttcagatgccaggcactgggaactcaacagagagcaaaatgatagtatctgtctcacatggagcctgggttatggtgaggggaacttaagataaatgaa i calJac3.chr1 C 0 C 0 s canFam3.chr1 35248089 279 - 122678785 AACTAGAGCACAGAAATTGCTGCTCTGGACCTGTACTTTCGAAAAGAAGGAGCAATTTCCATCAGAACAAACCTTCCCACTGCTTGCATATAATCAACACAGACAGGCATGACTTAGAAAGACTTAGGAGTTTTCAGCAAGATTGGAGTTtt-cattaattcgacaagaatctactgaggacctatatccaccatgtcctggagattcagcagtgagcagaagcat--tgtctatctcacctggaacctataatctggtagggggagctggagataaatggc i canFam3.chr1 I 211 I 2537 e mm10.chr19 38003648 4882 - 61431566 I a score=1994151.000000 s hg38.chr9_GL383541v1_alt 38880 686 + 171286 taggcgtaattctagcattttgggaggctgaggtgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaa-ccccg-tctgtactatacatacaaaaagcagccaggcgtgatggcaggcacctgtagtcccggctacttgggagactgagacaggagaatcacttgaacctgggaggtggaggctgcagagccgagatcacgccactgcacttcagcctgggcaacagagtgagactct------------------------------------------gtctcaaaagaaaaaaaa------taaataggcaaacaacagtaagatgagccaagtggtataaggttcgtggagatggagagaaatatgacagcaaaa-ggtagctgttttggctcaggtgggcaggaaaagattctctaaagaggaaagtgctgagcagaggcctgaatgagagatggagtgagcATAGTTCGTGATGTGcgtgtccttgttcatctttgtagtgcctcatccaatactgggcgcatagtagatgcttgggaaatatgtatttaataagtaaatAAAAGAAAAATATAAGAACGTTATTTACTACTCTATTTCAGAACTAAGTATTTAGATAGACATCTTTTGAAAATAATGTT-AATTTATCTTATAACTTAATGTCTCTTCATTTACCATTAGATGTTAAAAGATAAAACAAGAAAGTGATAATA s panTro4.chr9 68604591 688 + 137840987 taggcgtaattctagcattttgggaggctgaggtgggcggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccg-tctgtactatacatacaaaaagcagccaggcgtgatggcaggcacctgtagtcccggctacttgggagactgagacaggagaatcacttgaacctgggaggtggaggctgcagagctgagatcacgccactgcacttcagcctgggcaacagagtgagactct------------------------------------------gtctcaaaagaaaaaaaa-----ataaataggcaaacaacagtaagatgagccaagtggtataaggtttgtggagatggagagaaatatgacagcaaaa-ggtagctgttttggctcaggtgggcaggaaaagactctctaaagaggaaagtgctgagcagaggcctgaatgagagatggagtgagcATAGTTCGTGATGTGTgtgtccttgttcatctttgtagtgcctcatccaatactgggcgcatagtagatgcttgggaaatatgtatttaataagtaaatAAAAGAAAAATATAAGAACGTTATTTACTACTGTATTTCAGAACTAAGTATTTAGATAGACATCTTTTGAAAATAATGTT-AATTTATCTTATAACTTAATGTCTCTTCATTTACCATTAGATGTTAAAAGATAAAACAAGAAAGTGATAATA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64757644 686 + 135191526 taggcgtaattccagcactttgggaggctgaggtgggcggatcacctgaggtcaggagtttgagaccagcctggccaacacggtgaaaccccg-tctgtactatacatacaaaaagcagccaggcgtgatggcaggcgcctgtagtcccggctacttgggagactgagacaggagaatcacttgaacctgggaggtggaggctgcagagccgagatcatgccactgcacttcagcctgagcaacagagtgagactct------------------------------------------gtctcaaaagaaaaaaaa-------aaataggcaaacaacagtaagatgagccaagtggtataagtttcatggagatggagagaaatatgacagcaaaa-ggtagctgttttcgctcaggtgggcaggaaaagactctctaaagaggaaagtgctgagcagaggcctgaatgagagatggagtgagcGTAGTTTGTGATGTccatgtccttgttcatctttgaagtgcctcatccaatactgggcacatagtagatgcttgggaaatatatatttaataagtaaatAAAAGAAAAATATAAGAACATTATTTACTACTGTATTTCAGAACTAAGTATTTAGATAGCCATCTTTTGAAAATAATGTT-AATTTATCTTATAACTTAATGTCTCTTCATTTACCATTAGATGTTAAAAGATAAAACAAGAAAGTGATAATA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57797864 684 - 122973662 taggcataattccagcactttgggaggctgaggtgggcagatcacttgaggtcaggagtttgagaccagcctggccaacatggagaaacccca-tctgtactataaatacaaaaagcagccagctgtgatggcaggcgcctgtagtcccggctacttgggagactgagacaggagaatcacttgagcctgggaggtggaggctgcagagcagagatcacgccactgcacttcagcctgggcaacagagtgagactct------------------------------------------gtctcaaaagaaaaaaaa-----ataaataggcaaacaacagtatgatgtgcccagtggtataagttttgtagaggtggagagaaatatgacagcaaaagggtagctgttttggctcaggtgggcaggaaaagactctctaaagaggaaagtgctgagcagaggcctgaatgagagacggagtgagcATAGTTCGTGATGTGCTTGTCcttgttcatctttgtagtgcctcatccaatactgggcgcatagtagatgcttgggaaatatgtatttaataagtaaatAAAAGAAAAATATAAGAACGTTATTTACTACTGTATTTCAGAACTGAGTATTTAGATAGCCATCTTTTGAAAATAATGTT-AAT-----TTATAATTTAATATATCTTCATTTACCATTAGATGTTAAAAGATAAAACAAGAAAGTGACAATA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79731635 733 + 112192347 taggcataactccagcactttgggaggccgaggtgggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaacccca-tctgtactataaatacaaagaacagccaggcgtgatggcaggcgcctgtagtcccggctactcgggaggctgagacaggagaatcacttgaacctgggaggtggaggctgcagagccgagatcataccactgcacttcagcctgggctacagagagagactctgtctcaaaagaaaaataataataataatcaggcaaccaacaggtctcaaaagaaaaaaaataataataatcaggcaaccaacaatatgatgtgctgggttgtataagtttcatggagatggagagaaatatgacagcaaaagggtagctgttttggctcaagtgggtgggaaaagactctctaaagaggaaagtgctgagcagaggcctcagtgagagacggagtgagcatagttcgtgATGTGcatgtccttgttcatctttgtagtgcctcatccaatactgggcgcatagtagatgcttgggaaatatgtatttaataagta---aaAAGAAAAATATAAGAACGTTCTTTACTACTGTATTTCAGAACTAAGTATTTAGATAGCCACCTTTTGAAAATAATGTT-AATTTCTCTTATAACTTAATGTCTCTTCATTTACCATTAGATGTTAAAAGATAAAACAAGAAAGTGATAATA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80812462 691 + 112612857 taggcataactccagcactttgggaggccgaggtgggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaacccca-tctgtactataaatacaaaaaacagccaggcatgatggcaggcgcctgtagtcccggctactcgggaggctgagacaggagaatcacttgaacctgggaggtggaggctgcagagccgagatcataccactgcacttcagcctgggcaacagagtgagactct------------------------------------------gtctcaaaagaaaaaaaataataataatcagacaaccaacagtatgatgtgctgggttgtataagtttcatggagatggagagaaatatgacagcaaaagggtagctgttttggctcaggtgggtgggaaaagactctctaaagaggaaagtgctgagcagaggcctcagtgagagacggagtgagcATAGTTCGTGATGTGcatgtccttgttcatctttgtagtgcctcatccaatactgggcgcatagtagatgcttgggaaatacgtatttaataagta---aaAAGAAAAATATAAGAACGTTCTTTACTACTGTATTTCAGAACTAAGTATTTAGATAGCCACCTTTTGAAAATAATGTT-AATTTCTCTTATAACTTAATGTCTCTTCATTTACCATTAGATGTTAAAAGATAAAACAAGAAAGTGATAATA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76861578 690 + 107442819 TAGGcataactccagcactttgggaggccaaggtgggcggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccg-tctgtactataaatacaaaaagcagccaggcatgatggcaggtgcctgtagtcccggctacttgggaggctgagacaggagaatcacttgaacctgggaggtggaggctgcagagccgagatcacaccactgcacttcagcctgggcaacagagtgagactct------------------------------------------gtctcaaaag-aaaaaaataataataatcaggcAAACAACAGTATGATGTGCTGGGTTGTATAAGTttcatggagatggagagaaatatGACAGCAAAAGGGTAGCTGTTTTGGCTCAGGTTGGCAGGAAAAGACTCTCTAAAGAGGAAAGTGCTGAGCAGAGGCCTCAATGAGAGACGGAGTGAGCATAGTTCGTGATGTGCATGTCCTTGTTCATCTTTGTAGTGCCTCATCCAATACTGGGCACATAGGAGATGCTTGGGAAATACGTATTtcataagta---aaaagaaaaatataagaacattCTTTACTACTGTATTTCAGAACTAAGTATTTAGATAGCCAccttttgaaaataatgtt-aatttcTCTTATAACTTAATGTCTCTTCATTTACCATTAGatgttaaaagataaaacaagaaagTGATAATA i papAnu2.chr15 C 0 I 1 s chlSab2.chr12 81125139 691 + 108555830 taggcataactccagcactttgggaggccgaggtggatggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaacccca-tctgtactataaatacaaaaagcagccaggcatgatggcaggcgcctgtagtcccagctactcgggaggctgagacaggagaatcacttgaacctgggaggtggaggctgcagagctgagatcacaccactacacttcagcctgggcaacagagtgagactct------------------------------------------gtctcaaaagaaaaaaaataataataatcaggcaaccaacagtatgatgtgctgggttgtataagtttcatggagatggagagaaatatgacagcaaaagggtagctgttttggctcaggtgggcgggaaaagactctctaaagaggaaagtgctgagcagaggcctcagtgagagacggagtgagcATAGTTCGTGATGTGcatgtccttgttcatctttgtagtgcctcatccaatactgggcgcatagtagatgcttgggaaatatgtatttaataagta---aCAAGAAAAATATAAGAACATTCTTTACTACTGTATTTCAGAACTAAGTATTTAGATAGCCACCTTTTGAAAATAATATT-AATTTCTCTTATAACTTAATGTCTCTTCATTTACCATTAGATGTTAAAAGATAAAACAAGAAAGTGATAATA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111347203 675 - 210400635 taGGtgtaattctagcactttgggaagccaaggtaggtagatcacctgaggtcaggagttcaagagcaccctgaccaacgtggtgaaatgttgatctataccgaaaatataaaaagcacccaggtgtggtggcaggtgcctgtagtccaagctattcaggag-ctgaggcag------cacttgaacttgggaggcagaggctgcagtga---------gccactgtactccagcctggccaacagaatgagattct------------------------------------------gtctcaaaagaaaaaaaa-aaaaaTGACTAGGCAAACAACAGTAGGATGTGCCAGGTGGTACAAGTTTCATGAAGATGGAGAGAAATACGACAGCAAAAGGATAGCTGTTTTGACTCAGGTGGGCAGAAAAAGA--CTCTAAAGAGCAAAGTGTTGAGCAGAGGCCTGAATGAGAGATGGAGTACACATAGCTCATGATGTAcatgtcctcatttatctttgtagtgcctcatccaatactgggtgcatagt-gatgcttgggaaatatgtattgaataagtaaatAAAA-AAATATATAAGAAAGGTCTTTACTACTATATTTCAGAACTAAGTATTTACATAGCCATCTTTTGAAAATAATGTTAAATTTACCTTATAACTTAATGTCTCTTCATTTACCATTAGATGTTAAAAGATAAAACAAGAAAGTGATAATA i calJac3.chr1 C 0 C 0 e mm10.chr19 38003648 4882 - 61431566 I e canFam3.chr1 35248368 2537 - 122678785 I a score=2800.000000 s hg38.chr9_GL383541v1_alt 39566 1 + 171286 G s panTro4.chr9 68605279 1 + 137840987 G i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64758330 1 + 135191526 G i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57798548 1 - 122973662 G i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79732368 1 + 112192347 G i rheMac3.chr15 C 0 I 10 s macFas5.chr15 80813153 1 + 112612857 g i macFas5.chr15 C 0 I 10 s chlSab2.chr12 81125830 1 + 108555830 g i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111347878 1 - 210400635 G i calJac3.chr1 C 0 C 0 e mm10.chr19 38003648 4882 - 61431566 I e canFam3.chr1 35248368 2537 - 122678785 I e papAnu2.chr15 76862268 1 + 107442819 I a score=42468.000000 s hg38.chr9_GL383541v1_alt 39567 47 + 171286 TATTATTAagagttatcactggaacctactttgtgccatacacttgc s panTro4.chr9 68605280 47 + 137840987 TATTATTAagagttatcactggaacctactttgtgccatatacttgc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64758331 47 + 135191526 TATTATTAagagttatcactggaacctactttgtgccatacacttgc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57798549 47 - 122973662 TATTATTAagagttatcactggaacctactttgtgccatacacttgc i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 111347879 47 - 210400635 TATTCTTAagagttatcactggagcctactttgtgccatacacttgc i calJac3.chr1 C 0 I 473 e mm10.chr19 38003648 4882 - 61431566 I e chlSab2.chr12 81125831 0 + 108555830 C e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e papAnu2.chr15 76862268 1 + 107442819 I e macFas5.chr15 80813154 10 + 112612857 I a score=63153.000000 s hg38.chr9_GL383541v1_alt 39614 80 + 171286 taggcactttattctaattatttataatctgttgaacagattacaagcctgtaattaggtatcattattatcattcccat s panTro4.chr9 68605327 80 + 137840987 taggcactttattctaattatttataatctgttgaacagattacaagcctgtaattaggtatcattattatcattcccat i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64758378 76 + 135191526 taggcactttattttaa----ttataatctgttgaacagattacaagcctgtaattaggtatcattattatcattcccat i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57798596 80 - 122973662 taggcactttattttaattatttataatctgttgcacagattacaagcctgtaattaggtatcattattatcattcccat i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 111348399 80 - 210400635 taggcactttattttaattacttctaatttgtcaaacagattataagcctgtaacttggtattattattatagttcccat i calJac3.chr1 I 473 C 0 e mm10.chr19 38003648 4882 - 61431566 I e chlSab2.chr12 81125831 0 + 108555830 C e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e papAnu2.chr15 76862268 1 + 107442819 I e macFas5.chr15 80813154 10 + 112612857 I a score=322868.000000 s hg38.chr9_GL383541v1_alt 39694 341 + 171286 tttacagataagaaaattggggctcaaataagctgcctgaagtgtatgtttttaaatattgcatctggcatttgtacccaagtgggcttcattccaaagcctgttctcttttagatgtgccacaccacTGATTAAATGGAAGCCACCTGAAAAAATAAAATTTTACTGAAAAAGATCTTTATTGATTTTTGCTGAATTACAAAGGGATAAGCATTCTTTA-TTTTTTTAAAAAAAGAAGTGTATGAAGAATAAATCAAATGTGATTCTCACATCTCTACTGACAATAAGAAAACCTTTTCTTTATAAAAATGATGTATATATATATA----ATA-ATTTTAAAACAA s panTro4.chr9 68605407 345 + 137840987 tttacagataagaaaattggggctcaaataagctgcctgaagtgtatgtttttaaatattgcatctggcatttgtacccaagtgggcttcattccaaagcctgttctcttttagatgtgccacaccacTGATTAAATGGAAGCCACCTGAAAAAATAAAATTTTACTGAAAAAGATCTTTATTGATTTTTGCTGAATTACAAAGGGATAAGCATTCTTTA-TTTTTTTAAAAAAAGAAGTGTATGAAGAATAAATCAAATGTGAGTCTCACATCTCTATTGACAATAAGAAAACCTTTTCtttataaaaatgatgtatatatatatatataata-attttaaaacaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64758454 335 + 135191526 tttacagataagaaaattggggctcaaataagctgcctgaagtgtatgtttttaaatattgcatctggcatttgtacccaagtgggcttcattccaaagcctgttctctttttgatgtg-----ccacTGATTAAATGGAAGCCATCTGAAAAAATAAAATTTTACTGAAAAAGATCTTTATTGATTTTTGCTGAATTACAAAGGGATAAGCGTTCTTTATTTTTTTTTAAAAAAGAAGTGTATGAAGAATAAATCAAATGTGATTCTCACATCTCTATTGACAATAAGAAAACCTTTTCtttataaaaatgatgtatatatata------ata-attttaaaacaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57798676 334 - 122973662 tttacagattagaaaattagggctcaaataagctgcatgaagtgtatgtttttaaatattgcatctggcatttgtacccaagtgggcttcattccaaagcctgttctcttttcgatgtg-----ccacTGATTAAATGGAAGCCACCTGAAAAAATAAAAGTTTACTGAAAAAGATCTTTATTGATTTTTGCTCAATTACAAACGAATAAGCGTTCTTTT-TTTTTTTAAAAAAAGAAGTGTATGAAGAATAAATCAAATGTGATTCTCACATCTCTATTGACAATAAGAAAACCTTTTCTTTATAAAAATGATGTATATATATA------ATA-ATTTTAAAACAA i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 111348479 324 - 210400635 tttacggataagaaaattgaggcttaaatcagctgcctgaagtgtatgtttttaaatattgcatctggcatttgtattcaagtgggcttcatttcaaagcctgctatcttgtcagtgtg-----ccacTGATTAAAGGGAAGCCACCTGAAAAAATAAAAA--TGCTGAGAAAGATCTTTATTGATTTTTGCTGAGTTACAAAGGGATAAGCATTCTTTA---------AGAAAGTAAGTATATGAAGGACAAATCAAATATGCTTCTCACATCACTACTGACAATAAGAAAACCTTTTCCTTATAAAAATGATGCatatatata------ata-attttaaaaCAA i calJac3.chr1 C 0 C 0 s mm10.chr19 38008530 318 - 61431566 tttttagataagaaaaatgaagcttaggtaagctgtctgaaatacaggctttcaaatattaagtctgggatttgtaacccagtaacgttcactccaaagcccatgttccttgccacatg-----ccaGCGACTAAATGGAAACCTACAAAAGTAATAGGATTTCACTCTG-AAGGCCTTTATTG------GCTGAGCTATATAGGAATCAGTATT-TTTA----TCTTAAAAAATAAAGTGTATTAAGTTCAAATAAAATGTGCTTCTCACAACATTGTTGGCATTAAAAA---CCAGTGTTAGTAAAAATGAC---TATGCATA------AGACATTTTAGAATAA i mm10.chr19 I 4882 I 27 e chlSab2.chr12 81125831 0 + 108555830 C e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e papAnu2.chr15 76862268 1 + 107442819 I e macFas5.chr15 80813154 10 + 112612857 I a score=125942.000000 s hg38.chr9_GL383541v1_alt 40035 178 + 171286 TATAAGGACATATG----AATTTTTTTAAAA-ttttttttccataggttattggggaacaggtggtgtttggttacatgagtaggttctttggtggtgatttatgagatctttgtgccccatcacccgagcagtgtacactgaaccccatttgtggtcttttatcccttaccccctttccacc s panTro4.chr9 68605752 179 + 137840987 tataaGGACATAAG----AATTTAAAAAAAAAttttttttccataggttattggggaacaggtggtgtttggttacatgagtaggttctttggtggtgatttatgagatttttgtgccccatcacccgagcagtgtacactgaacccaatttgtggtcttttatccctcaccccctttccacc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64758789 177 + 135191526 tataaGGACATACG----AATTTTTTAAAA--ttttttttccataggttattgggcaacagatggtgtttggttacatgagtaggttctttagtggtgatttatgagattttggtgccccatcacctgagcagtgtacactgcacccaatttgtggtcttttatccctcaccccctttccacc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57799010 178 - 122973662 TATAAGGACATATG----AATTTTTTTAAAt-ttttttttccataggttattgggaaacagatggtgtttggttacatgagtaagttctttactggtgatttatgagattttggtgccccatcacccaagcagtgtacactgtacccaatttgtggtcttttatccctcaccccctttccacc i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 111348803 168 - 210400635 CATAAGGATATATGAAGTAATTttt-------ttttatttccataggttactgggg-acaggtggtaactggttgcaagactaagttctttagtggtgatttgtgaaattttggt-----atcacctgagcagtatacactggacctaatttgtggtcttttattcctca--ccctttccacc i calJac3.chr1 C 0 I 17 e mm10.chr19 38008848 27 - 61431566 I e chlSab2.chr12 81125831 0 + 108555830 C e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e papAnu2.chr15 76862268 1 + 107442819 I e macFas5.chr15 80813154 10 + 112612857 I a score=59356.000000 s hg38.chr9_GL383541v1_alt 40213 113 + 171286 tgagtccccaaagtccattgtatcactcttatgcctgtgcgtccttatagcttagctcccccatatgaatgagaatatacaatgttcagttttccattcttTCACCGGATATA s panTro4.chr9 68605931 113 + 137840987 tgagtccccaaagtccattgtatcactcttatgcctgtgcgtccttatagcttagctcccccatatgaatgagaatatacaatgttcagttttccattcctTCACCGGACATA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64758966 113 + 135191526 tgagtccccaaagtccattgtatcattcttaagcctgtgcatccttatagcttagctcccccatatgagtgagaatatacaatgtttagttttccattcctTCACCGGACATA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57799188 113 - 122973662 tgagtccccaaagtccattgtatcattcttatgcctgtgcatccttatagcttagctcccacatataagtgagaatatacaatgtttagttttccattcctTCACCAGACATA i nomLeu3.chr1a C 0 C 0 e mm10.chr19 38008848 27 - 61431566 I e chlSab2.chr12 81125831 0 + 108555830 C e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e calJac3.chr1 111348971 17 - 210400635 I e papAnu2.chr15 76862268 1 + 107442819 I e macFas5.chr15 80813154 10 + 112612857 I a score=88747.000000 s hg38.chr9_GL383541v1_alt 40326 139 + 171286 TGAATTAAAATTTTAAAACTCCCTTCTTTTCCTCCAAATCCCAATCCCACTGTCTGTAAGGAACCACTACAACCAATTTCTTGTGTAATTTCTGAAACTGCGTTTGCACTTGGAGACAAAGAGAAGGGgtgtgtgtgtg s panTro4.chr9 68606044 139 + 137840987 TGAATTAAAATTTTAAAACTCCCTTCTTTTCCTCCAAATCCCAATCCCACTGTCTATAAGGAACCACTACAAGCAATTTCTTGTGTAATTTCTGAAACTGCGTTTGCACTTGGAGACAAAGAGAAGGGgtgtgtgtgtg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64759079 133 + 135191526 TGAATTAAAATTTTAAAACTCCCTTCTTTTCCTCCAAATCCCAATCCCACTGTCTATAAGGAACCACTACAACCAATTTCTTGAGTAATTTCTGAAACTGCATTTGCACTTGGAGACAAAGAGAAGGGGTGTG------ i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57799301 139 - 122973662 TGAATTAAAATTTTAAAACTCCCTTCTTTTCCTCCAAATCCCAATCCCACTCTCTATAAGGAACCACTACAACCGATTTCTTGTGTAATTTCTGAAACTGTGTTTGCACTTGGAGACAAAGAGAAGgtgtgtgtgtgtg i nomLeu3.chr1a C 0 I 640 s mm10.chr19 38008875 113 - 61431566 TAAATTAAAAGT-----------TTCCTTTCTCCCTTACCCCA--------TCCTGTAAGTAACCGCTACAACCAATTTCTTATGTATGTTCTGAAATTGTACTTGCATTTATAAGCAAAA-------GTGTGTGTGTG i mm10.chr19 I 27 C 0 e chlSab2.chr12 81125831 0 + 108555830 C e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e calJac3.chr1 111348971 17 - 210400635 I e papAnu2.chr15 76862268 1 + 107442819 I e macFas5.chr15 80813154 10 + 112612857 I a score=2200.000000 s hg38.chr9_GL383541v1_alt 40465 8 + 171286 agtctgtg s panTro4.chr9 68606183 8 + 137840987 agtgtgtg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64759212 4 + 135191526 ----TGTG i ponAbe2.chr9 C 0 C 0 s mm10.chr19 38008988 8 - 61431566 TGTGTGTg i mm10.chr19 C 0 C 0 e chlSab2.chr12 81125831 0 + 108555830 C e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e calJac3.chr1 111348971 17 - 210400635 I e papAnu2.chr15 76862268 1 + 107442819 I e macFas5.chr15 80813154 10 + 112612857 I e nomLeu3.chr1a 57799440 640 - 122973662 I a score=4548.000000 s hg38.chr9_GL383541v1_alt 40473 8 + 171286 tgagtgtg s panTro4.chr9 68606191 8 + 137840987 tgagtgtg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64759216 8 + 135191526 TGAGTGTA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57800080 8 - 122973662 tgagtgtg i nomLeu3.chr1a I 640 C 0 s mm10.chr19 38008996 8 - 61431566 agagagag i mm10.chr19 C 0 C 0 e chlSab2.chr12 81125831 0 + 108555830 C e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e calJac3.chr1 111348971 17 - 210400635 I e papAnu2.chr15 76862268 1 + 107442819 I e macFas5.chr15 80813154 10 + 112612857 I a score=824261.000000 s hg38.chr9_GL383541v1_alt 40481 940 + 171286 --tgtgagtgtttgtAATCCATCTTTAGGAAACAGCTTTTACAGATAATTTTCTGTTTCCATCCATGCCATGTG---CCTCCAACTTCCTAAATGGCAAAAATTTTACTGCATAACACATGTAAA-TGAGgaactacagaatgtgtatgctggaaggta------ctccaaaggcc----tctgagcagaaccctctagttgtctaatgaggaaactgaggtcccagagagtcaaatgacttgtgtaaggtaacacaatcagtccagagagcagCCAGC-------AGCCAGTCAGTAAGAAACCTGGGTTAGTAGTTTGTCTATATAACCTCGTGCTacaa-aacaaaacaaagcaaaataaaatcaaGAATATGCCAAGCCATTGTAACTTGAGTGGAATCAACAT-TCAAGAGCTTCAT-----GTGAATTAATATTTAGGGAAAATACTTAATCTTAGCTCCATCTGTCTATATGAAATATAATGAAAGAATCAATCAGTAAAACCTCCCTCTGTCAAAATCACACAGGAAACATACTAGAGAAACGACTAACAGGGATTACGAGCTACTTATCCAAAAACCATGTGTATCGGTTTTCTAAATCTTGAAGGCAAGTGTAAAATAGAACCTTATTATTGAAAACTCATTTTTGCCTTTGAAAAGGTGTTTTGTGGTGAACATTCTAGTACATTCAACTTCTCCATATTGATAAGATTTGCTATTTA-----------------TGTTGCACAAAATGTCACGGATTAAAATAAAATATATTCCAGCTTAAGAATCCCTCTTTCTGTCCAGAAAATCAAGAGTTTTGATGACTACTAATCTATCCATATGTAAATAT-----------------------------------------TTGG---------------------GTAG-TTTAAA---------------ATAG-----------------------TATTTTAGTCTATTTTAAATGGCTTTGCTTTAGGAG-------ATGCCTAAAGCACATTTCTATTCTGGTGGCTTTGAAAAATCCTAATTGGAAAAATGATGTAATTTTCATCTAAG s panTro4.chr9 68606199 940 + 137840987 --tgtgagtgtttgtAATCCATCTTTAGGAAACAGCTTTTACAGATAATTTTCTGTTTCCACCCATGCCATGTG---CCTCCAACTTCCTAAATGGCAAAAATTTTACTGCATAACACATGTAAA-TGAGgaactacagaatgtgtatgctggaaggta------ctccaaaggcc----tctgggcagaaccctctagttgtctaatgaggaaactgaggtcccagagagtcaaatgacttgtgtaaggtaacacaatcagtCCAGAGAGCAGCCAGC-------AGCCAGTCAGTAAGAAACCTGGGTTAGTAGTTTGTCTATATAACCTCATGCTGcaa-aacaaaacaaagcaaaataaaaTCAAGAATATGCCAAGCCATTGTAACTTGAGTGGAAACAACAT-TCAAGAGCTTCAT-----GTGAATTAATATTTAGGGAAAATACTTAATCTTAGCTCCATCTGTCTATATGAAATATAATGAAAGAATCAATCAGTAAAACCTCCCTCTGTCAAAATCACACAGGAAACATTCTAGAGAAACGACTAACAGGGATTACGAGCTACTTATCCAAAAACCATGTGTATCGGTTTTCTAAATCTTGAAGGCAAGTGTAAAATAGAACCTTATTATTGAAAACTCATTTTTGCCTTTGAAAAGGTGTTTTGTGGTGAACATTCTAGTACATTCAACTTCTCCATATTGATAGGATTTGCTATTTA-----------------TGTTGCACAAAATGTCACGGATTAAAATAAAACATATTCCAGCTTAAGAATCCCTCTTTCTGTCCAGAAAATCAAGAGTTTTGATGACTACTAATCTATCCATATGTAAATAT-----------------------------------------TTGG---------------------GTAG-TTTAAA---------------ATAG-----------------------TATTTTAGTCTATTTTAAATGGCTTTGCTTTAGGAG-------ATGCCTAAAGCACATTTCTATTCTGGTGGCTTTGAAAAATCCTAATTGGAAAAATGATGTAATTTTCATCTAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64759224 940 + 135191526 --TGTGAGTGTTTGCAATCCATCTTTAGAAAACAGCTTTTACAGATAATTTTCTGTTTCCTTCCATGCCAGGTG---CCTCCAACTTCCTAAATAGCAAAAATTTTACTGCATAACACATCTAAA-TGAGgaactaaagaatgtgtatgctggaaggta------ctccaaaggcc----tctgggcagaaccctctagttgtctaatgaggaaactgaggtcccagagagtcaaatgacttgtgtaaggtaacacaatcagtCCAGAGAGCAGCCAGC-------AGCCAGTCAGTAAGAAACCTGGGTTAGTAGTTTGTCTATATAACCTCATGCTGCAA-AACAAAACAAAGCAGAATAAAATCAAGAATATTCCAAGTCATTGTAACTTGAGTGGAAACAACAT-TCAAGAGCTTCAT-----GTGAATTAATATTTAGGGAAAATACTTAATCTTAGCTCCATCTGTCTATATGAAATATAATGAAAGAATCAATCAGTAAAACCTCCCTCTGTCAAAATCACACAGGAAACATACTAGAGAAACGACTAACAGGGATTACGAGCTACTTATCCAAAAAGCATGTGTATCGGTTTTCTAAATCTTGAAGGCAAGTGTAAAATAGAACCTTATTATTGAAAACTCATTTTTGCCTTTGAAAAGGTGTTTTGTGATGAACATTCTAGTACATTCAACTTCTCCATATTGATAGGATTTGCTACTTA-----------------TGTTGCACAAAATGTCACGGATTAAGATAAAATATATCCCAGCTTAAGAATCCCTCTTTCTGTCCAGAAAATCAAGTGTTTTGATGACTACTAATCTATCCATATGTAAATAT-----------------------------------------TTGG---------------------GTAG-TTTAAA---------------ATAG-----------------------TGTTTTAGTCTATTTTAAATGGCTTTGCTTTAGGAG-------ATGCCTAAAGCACATTTCTATTCTGGTGGCTTTGAAAAATCCTAATTGGAAAAATGATGTAATTTTCATCTAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57800088 928 - 122973662 --tgtgagtgtttgtAATCCATCTTTAGGAAACAGCTTTTACAGTTAATTTTCTGTTTCCATCCATACCACGTG---CCTCAAACTTCCTAAATAGCAAAAATTTTACTGCATAACACATCCAAA-TGAGgaactaaagaatgtgtatgctggaaggta------ctccaaaggcc----tctgggcagaaccctccagttgtctaatgaggaaactgaggtcacagagagtcaaatgacttgtgtaaggtaacacaatcagtCCAGAGAGCAGCCAGC-------AGCCAGTCAGTAAGAAATCTGGGTTAGTAGTTTGTCTATATAACCTCATGCTGcaa-agcaaaacaaagcaaaataaaatcaaGAATATGCCAAGCCATTGTAACTTGAGTGGAAACAACAT-TCAAGAGCTTCAT-----GTGAATTAATATTTAGGGGAAA----TAATCTTAGCTCCATCTGTCTATATGAAATATAATGAAAG----AATCAGTAAAACCTCCCTCTGTCAAAATCACACAGGAAACATACTAGAGAAACAACTAACAGGGATTACGAGCTACTTATCCAAAAACCATGTGTATTGGTTTTCTAAATCTTGAAGGCAAGTGTAAAATAGAACCTTATTATTGAAAACTCA-TTTTGCCTTTGAAAACGTGTTTTGTG--GAACATTCTAGTACATTCAACTTCTCCATATTGATAGGATTTACTATTTA-----------------TGTTGCACAAAATGTCACGGATTAAAATAAAATATATTCCAGCTTAAGAATCCCTCTTTCTGTCCAGAAAATCAAGAG-TTTGATGACTACTAATCTATCCATATGTAAATAT-----------------------------------------TTGG---------------------GTAG-TTTAAA---------------ATAG-----------------------TATTTTAGTCTGTTTTAAATGGCTTTGCTTTAGGAG-------ATGCCTAAAGCACATTTCTATTCCGGTGGCTTTGAAAAATCCTAATTAGAAAAATGATGTAATTTTCATCTAAG i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 111348988 891 - 210400635 --TGTGAGCATGTATAATCCATCTTTAGGAAACAGCTTTTACAAGCAATTTTCTGTTTCTATCCATGCCAGGTG---CCTCCAACTTCCTAAATAGCAATAATTTTGCTGCATAACACATCTAAA-TGAagaactatagaatgtttatgctggaaggta------ctccaaaggcc----tctgggcag-actctccagttgtctaatgaggaaactgagatcccagagagtcaaatgacttgtgtaaggtaaca----cagtccagagagcaatcagc-------agccactcagcaagaaacctgggtcagtag--tgtctatataacctcatgctacaA-AACAAAACAAAGCAAAGTGAAATCAAGAAAATGCTGAGCCATTGTAACCTAAGTGAAAACAACAT-TCAGGAGCTTCAT-----GTGAATTAATATGTAGGGTAAATACTTA----TGGCTGCATCTGTCTATATGAAATACAATGAATA----AATCAGCAAAATTTCCCTCTATTAAAATCACA-----------CTGGAGAAATGATTAACAGGGATTATGAGCTACTTATCCAAAAACCATGTGTATCAGCTTTCTAAATCCCGAGGGCAAGTGTGAAAGAGAATCTTATTACTGAGAACTCA-TTTTGTCTTTGAAAAGGTGTTTTGTGGTGAACATTCTAATACATTCGATTTATCCATACTTACAGGATTTGCTATTTA-----------------TGTTGCACAAAATGTCAAGTAT-----TAAAATATATTTCAG-------------TGTCCTGTCCAGAAAATCAAGAGTTTTGATGACTACTAATCTATCTTTCTGTAAATAT-----------------------------------------TTGG------------------------G-TTTAAA---------------ATAG-----------------------TATTGTAGTCTATTTTAAATGGCTTTCCTTTAGGGA-------ATGGAAAAAGCACATTACTATTCTGGT-GCTTTGAAAAATCCTAATTGGCAAAATGATGTAATTTTCATCTAAG i calJac3.chr1 I 17 I 2389 s mm10.chr19 38009004 994 - 61431566 agagagagag-----------------agagaaagTTGGGGTGTCTGATGTGCTA--TCTATCCATCTCAGGTGTCTTCTTCAACTTCCTAAGCAACAAACATTTCATTGCATAACTCTTCTAAGTTTAAGAAGCATAAAACATTTATGCTGGGGGTTGGGGTGTCTCCAAAGACCCTCTTCTGGGCAGATCCC-------------------------------------TCAAATGAC-TGTGTAAGGCCATACATTCAGT--AGAAGAAGGCAAGCTTAGGTTTGCTATCTAGGAAGAAACTCAGTCTGGTA---------------CCCATATTGTAACAACAAAACAAAGCAAAAGGCAAACA--------CTGAGC---TGTAATAGAACGGAGAACAACTCATTAAGAGCTTAACTGTCGGGGAGTTAAT-CCTGAGGCAAGTGACCAATTATGTTTCCATCTGTCCATGTGAAGTATAA--GAAGGATACATTAAGAAAGCATCCCTCCTTC-AAACCACAGAGGAGACATACCTGCGAAATGAGTAACAGTGAATACAGCATGCTCAG-CAAAGCCTGTGGGTATCAGCTTTCCAAAGCCGGACAGCGGGTCTGACATAAGAGGCTGTAGTTGCAGATGCATTTGTATCCCTGAAAAGGTGTGTCGCAGTGAGCATTCTAGTACATCAGCTTTC-----ATTGAT-GGCTTTTCTATTTGTTTTTTTTTTTTTTTTTTGCTCTGCCAGATGTCCAGAGTTGAAAGCAAATGTGTTTCATCCTAAGAGTCCTGACATTTGTGCAAAAGATAAATACTTTTGTTGACCACTAGTCTGGCCATGTGTAAATATGATTGTCACTAATCTAGCCATAGGTAATATCTAAGGCTCCATTGGTGATCACTAATCTATCCACAGGTAGATTTGAAGACCGGTATCTAGCCATAGTGCACATCTGAGACTAAGAGCTCTATTAGAATCTGCTTTAAACCACTGAACTCTAAGAGGCTGGTAGTTCCCAAAGCACACTTCTCTTCTGGTCTCTCT---ACATCCTAAGTGGAAAAGCAATTCAATCTTTATCAG-- i mm10.chr19 C 0 C 0 e chlSab2.chr12 81125831 0 + 108555830 C e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e papAnu2.chr15 76862268 1 + 107442819 I e macFas5.chr15 80813154 10 + 112612857 I a score=313651.000000 s hg38.chr9_GL383541v1_alt 41421 348 + 171286 AGAATAAACTGTGTCTCAT------CCAAGCAGGAGTCAAAACCCCACGTCCttttttttttttttt----------ttAATACATGGAGGCCCCTGAAAGTTAGAATAAGGCAGAAAAACCATGTAAAATTATGATGTTGCATTTTGATAGAAAACGTGTACT--TCACTCCAATCCCTGGCCTGGTCATTGGGTTGAGACATTGAGTGGAGTACACTGTGTTTCTACCAAAATTATTTCACAATTTCACTTGTTATTTTTGTAACAATTACCAAAGCTCATGATTCTTAC----ATTGCATAGCCCTAATGAACATTTTCCCATTGTTTTTTCCACCCTCCTATTCCTTGCATGTTTGCAGAAGTTTT s panTro4.chr9 68607139 345 + 137840987 AGAATAAACTGTGTCTCAT------CCAAGCAGGAGTCAAAGCCCCACCTCCTTTTTTTTTTTTTTT------------AATACATGGAGGCCCCTGAAAGTTAGAATAAGGCAGAAAAACCATGTAAAATTATGATGTTGCATTTTGGTAGAAAACGTGTACT--TCACTCCAATCCCTGGCCTGGTCATTGGGTTGAGACATTGAGTGGAGTACACTGTGTTTCTACCAAAATTATTTCACAATTTCACTTGTTATTTTTGTAACAATTACCAAAGCTCATGATTCTTAC----ATTGCATAGCCCTAATGAACATTTTCCCATTGTTTTTTC-ACCCTCCTATTCCTTGCATGTTTGCAGAAGTTTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64760164 351 + 135191526 AGAATAAAC--TATCTCAT------CCAAGCAGGAGTCAAAGCCCCACCTCCttttttttttttttt----ttttttttAATACATGGAGGCCCCTGAAAGTTAGAATAAGGCAGAAAAACCATGTAAAATTATGATGTTGCATTTTGGTAGAAAACGTGTACT--TCACTCCAATCCCTGGCCTGGTCATTGGGTTGAGACATTGAGTGGAGTACACTGTGTTTCTACCAAAATTATTTCACAATTTCACTTGTTATTTTTGTAACAATTACCAAAGCTCATGATTCTTAT----ATTACATAGCCCCAACGAACATTTTCCCATTGTTTTTTC-ACCCTCCTAATCCTTGCATGTTTGCAGAAGTTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57801016 341 - 122973662 AGAATAAACTGTGTCTCAT------CCAAGCAGGAGTCAAAGCCCCACCTCCTTTTTTTTTTT----------------AATACATGGAGGCCCCTGAAAGTTAGAATAAGGCAGAAAAACCATGTAAAATTATGATGTTGCATTTTGGTAGAAAACGTGTACT--TCACTCCAATCCCTGGCCTGGTCATTGGGTTGAGACATTGAGTGGAGTACACTGTGTTTCTACCAAAACTATTTCACAATTTCACTTGTTATTTTTGTAATAATTACCAAAGCTCATGATTCTTAC----ATTACATAGCCCTAATGAACATTTTCCCATTGTGTTTTC-ACCCTCCTATTCCTTGCATGTTTGCAGAAGTTTT i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 111352268 352 - 210400635 AGAATAAAC--TGTCTCAT------TCAAGCATGAGTCAGAGCCCCACCACCtttttttgtttgtttgtttgtttgtttAATACATGGAGGCCCCTTAAAGTTAAGATAAGGCAG--AAACTATGTAAAATTATGAAGTTGCATTTTGGTAGAAAACGTGT-------ACTCCAATCCCTAGCCTGGTCATTGGGTTGAGATACTGAGTGGTATACACTGTGTTTCTAGCAAAATTATTTCACAATTTCATTCATTACTTTTGTAATAATTTCCAGAGCTCATGATTCTTACATTAATTACATAGCCCTAATGAGCATTTTCCCATTGTTTTTTT-ACCCTCCTATTCCTTGTATGTTTGCAGAAGTGTT i calJac3.chr1 I 2389 C 0 s mm10.chr19 38009998 334 - 61431566 AGAATGGACTGGGCCTCATCCTGAGCCAGGCAGGAGTCCAAGCCTTTCCTGGTTCCTCCTTT-------------------------GAGGCCCCTCAAATTTAGAATAGGTCAAAGAGTCC-CACAGGGTTAGGATGTCCCATTTTG-CAATGAACATGTGCTGGTCACT-CAGCCCCTTGCCTAGCCAGTGCTCTCAAACACAGAGTGGAGCGCACTGCTTCTTTATCAGAGTCACTTCTCAGCCTTATGGTCTGTTTCCACAGGACTTTCCAGGACCCAGGATTCTCAC----AGTACAGAATCT--AGGAAGCTCCTCCCTGCATTTCCTC-ACCATCCTGCTCC-TATGTGCTTTCGAGGATTTT i mm10.chr19 C 0 I 1225 e chlSab2.chr12 81125831 0 + 108555830 C e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e papAnu2.chr15 76862268 1 + 107442819 I e macFas5.chr15 80813154 10 + 112612857 I a score=183911.000000 s hg38.chr9_GL383541v1_alt 41769 221 + 171286 AGTGGATGCCAAATGTTGTTCTTGAGCAAGTTTGTTTATTTAGTCatttttcctttcaagagaatctattgatacccacagtatttcaaatcataatgtagggcctgggatatagtagtgaatgaaacaaagttccgactctcctgaaacttatattctggtaaggggaaacatgacattcacaaacacataaataatcatatatggtatcgtgtcctatg- s panTro4.chr9 68607484 221 + 137840987 AGTGGATGCCAAATGTTGTTCTTGAGCAAGTTTGTTTATTTAGTCatttttcctttcaagagaatctattgatacccacagtatttcaaatcataatgtagggcctgggatatagtagtgaatgaaacaaagttccgactctcctgaaacttatattctggtaaggggaaacatgacattcacaaacacataaataatcatatacggtatcgtgtcctatg- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64760515 221 + 135191526 AGTGGATGCCAAATGTTGTTCTTGAGCAAGTTTGTTTATTTAGTCatttttcctttcaagacaatctattgatacccacagtatttcagatcataatgtagggcctgggatatagtagtgaatgaaacaaagttctgactctcatgaaacttatattctggtaaggggaaacatgacattcacaaacacataaataatcatatacgatatcatgtcctatg- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57801357 220 - 122973662 AGTGGGTGCCAAATGTTGTTCTTGAGCAAGTTTGTTTA-TTAGGCatttttcctttcaagagaatctattgatacccacagtatttcagatcataatgtagggcctgggatatagtagtgaatgaaacaaagttctgactctcatgaaacttatattctggtaaggggaaacatgacattcacaaacacataaataatcatatatggtatcgtgtcctatg- i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 111352620 218 - 210400635 AGTGGAAGTCAAATGTTGTTCTTGAGCAAGTTTGCTTATTTAGTCATTTTTCCTTTCCAGAGAatctattgataaccacagtatttcaggccacaatgtagggactgggatatagtagtgaatgaaacaaagttctgactctcatggaacttgcattctggtaaggcgaaacatgacattcataaacac----ataatcatacacggtatcatgtcctgtga i calJac3.chr1 C 0 C 0 e mm10.chr19 38010332 1225 - 61431566 I e chlSab2.chr12 81125831 0 + 108555830 C e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e papAnu2.chr15 76862268 1 + 107442819 I e macFas5.chr15 80813154 10 + 112612857 I a score=72430.000000 s hg38.chr9_GL383541v1_alt 41990 74 + 171286 aaaaattagggtaagaggataggtatgaaggaagattggggcagttcagaaagacctctgtcacagctcagcag s panTro4.chr9 68607705 74 + 137840987 aaaaattagggtaagaggataggtatgaaggaagattagggcagttcagaaagacctctgtcacagctcagcag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64760736 74 + 135191526 aaaaattagggtaagatgataggtatgaaggaagattggggcagttcagaaagatctctgtcacagctcaacag i ponAbe2.chr9 C 0 I 2637 s nomLeu3.chr1a 57801577 74 - 122973662 aaaaattagggtaagacgataggtatgaaagaagattggggcagttcagaaagacctctgtcacagctcagcag i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 111352838 74 - 210400635 aaaaattagggtaagcagatgggcgtaatggaagattggggcagttcagaaagacctctgtcacagctcagcag i calJac3.chr1 C 0 C 0 s mm10.chr19 38011557 66 - 61431566 aaaaGTCACAATAGGAGACCAGATAGTGAGGA--------GCCATCTTggaagacctctctcacagctgagcag i mm10.chr19 I 1225 C 0 e chlSab2.chr12 81125831 0 + 108555830 C e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e papAnu2.chr15 76862268 1 + 107442819 I e macFas5.chr15 80813154 10 + 112612857 I a score=638300.000000 s hg38.chr9_GL383541v1_alt 42064 674 + 171286 --agacccaagggaa-tggggcagccagacatgcgactctccaggttccaagtgctccaggcagaggggaaagcaagggcaaaatccctgaggaaagggggtgcttggtgaatatgaagaactgtcaagaagccagtgtgcctggaacagagtgaataggagcaagacagagtagtagaaaatgaagcaagaggtagccaggccagagcacttaggaactaacaggatttacctgaataagtgggaactgggtgactttgagaagaggaaggtcacgtctcttttccttttagaagaatctcgcaggctggtg-taggtagtatactgtgcaagggcgaaggggaggtaggggggcagctagaggttacagttcagacaagagatcatagtggcttaggaagggtt-actgcagggccatggtgtatgatggtacaggttgttcgctacccaaaggcatctggcTTTTCTCATCAAGCCAGGGGTTGTGCCAG-----------CCAAAAGGAAAAGCTATCTTTTTCTAATTGGCATCCCAGAGTGGGGGTTTTTCTACAATTCATCTGTCTTTTGCTAAATTGCATGCTGGTGCTAAAAGTATGTAC-TAGCAATGGTGCTGATGggtcacagtagagataagtgggaagtggtcttattaaggatatatttgaagaataaagccaatg s panTro4.chr9 68607779 675 + 137840987 --agacccaagggaaatggggcagccagacatgcgactctccaggatccaagtgctccaggcagaggggaaagcaagggcaaagtccctgaggaaagggggtgcttggtgaatatgaagaactgtcaagaagccagtgtgcctggaacagagtgaataggagcaagacagagtagtagaaaatgaagcaagaggtagccaggccagagcacttaggaactaacaggatttacctgaataagtgggaactgggtgactttgagaagaggaaggtcacgtctcttttccttttagaagaatctcgcaggctggtg-taggtagtatactgtgcaagggcgaaggggaggtaggggggcagctagaggttacagttcagacaagagatcatagtggcttaggaagggtT-ACTGcagggccatggtgtatgatggtacaggttgttcactacccaaaggcatctggcTTTACTCATCAAGCCAGGGGTTGTGCCAG-----------CCAAAAGGAAAAGCTATCTTTTTCTAATTGGCATCCCAGAGTGGGGGTTTTTCTACAATTCATCTGTCTTTTGCAAAATTGCATGCTGGTGCTAAAAGTATGTAC-TAGCAATGGTGCTGGTGggtcacagtagagataagtgggaagtggtcttattaaggatatatttgaagaataaagtcaatg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64763447 675 + 135191526 --agacccaagggaaatggggcagccagacatgtgactctccagtatccaagtgctccaggcagaggggaaagcaagggcaaaatccctgaggaaagggggtgcttggtgaatatgaagaaccgtcaagaagccagtgtgcctggaatagagtgaatgggagcaagacagagtggtagaaaatgaagcaagaggtagccaggccagagcacttagggactaacaggatttacctgaataagtgggaactgggtgactttgagaagaggaaggtcacgtctcttttccttttagaagaatctcgcaggctggtg-taggtagtatactgtgcatgggcgaaggggaagtagggaggcagctagaggttacagttcagacaagagatcatagtggcttaggaagggtT-ACTGcagggccatggtgtatgatggtacaggttgttcactacccaaaggcatctggcTTTTCTCATCAAGCCAGGGGTTGCGCCAG-----------CCAAAAGGAAAAGCTATCTTTTTATAATTGGCATCCCAGAGTGGGGGTTTTTCTACAATTCATCTGTCTTTTGCTAAATTGCATGCTGGTGCTAAAAGTATGTAC-TAGCAATGGTGCTGGTGggtcacagtagaggtaagtgggaagtggtcttattaaggatatatttgaagaataacgccaatg i ponAbe2.chr9 I 2637 C 0 s nomLeu3.chr1a 57801651 675 - 122973662 --agacccaagggaaatggggcagccagccatgcaactctccaggatccaagtgctccaggcagaggggaaagcaagggcaaaatccctgaggacagggggtgcttggtgaatatgaagaactgtcaagaagccagtgtgcctggaacagagtgaatgggagcaagacagagtggtagaaaatgaagcaagaggtagccaggccagagcacttagggactaacaggatttacctgaataagtgggaactgggtgactttgagaagaggaaggtcatgtctcttttccttttggaagaatctcgcaggctggtg-taggtagtatactgtgcatgggcgaaggggaagtaggagggcagctagaggttacagttcagacaagagatcatagtggcttaggaagggtt-actgcagggccatggtgtatgatggtacaggttgttcactacccaaaggcatctgacTTTTCTCATCAAGCCAGGGGTTGTGCCAG-----------CCAAAAGGAAAAGCTATCTTTTTCTAATTGGCATCCCAGAGTGGGGGTTTTTCTACAATTCATCTGTCTTTTGCTAAATTGCATGCTGGTGCTAAAAGTATGTAC-TAGCAATGGTGCTGGTGggtcacagtagagacaagtgggaaatggtcttattaagggcatatttgaagaataaatccaatg i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 111352912 683 - 210400635 --agccccaagggaaatggggcaacaagccatgatactctcctcgaacaaagtgctccaggcaaaggggaaagcaagggcaaaatccctgaggaaagagggtgcttgatgaatatgaagaaccatcaagaagccagtgtgcctggaacaaagtgaacgggagcgggacagagtggtagaaaatgaagcaagaggtagctgggccagagcacttagggactaacaggatttacctgaataagtgggaatgggatgactttgagaagaaggcagccatatctctcttccttttagaagaatcacgcaggctgatg-taggtagtatactgtgcatgggtaagggagaagtagg-gggcagctagaggttacagttcagaca--agatcatggtggcttaggaatggtt-actgcagggccatggtgTTTGATGGTACAGGTTGTTCGCTACCCAAAGGCAGCTGGCTTTTCTCATCAAGCCAGGGGTCGTGCCAGGaaaaaaaaaaaaaaaaaaaaaaGTTGTCTTTTTCTAATTGGTATCCCAGAGTGGGGATTTTTCTACAATTCGTCTGTCTTTTGCTAAATTGCATGCTGGTGCTGAAAGTATGTAC-TAGCAATGGTGCTACTGggtcacagtagagataaatgggaagtggtctcattagggatatatttaaagaataaagccaatg i calJac3.chr1 C 0 C 0 s mm10.chr19 38011623 549 - 61431566 agagaccccaggacataagagatgct--ctatgtctctttctggggttcaagtgctacaagcaaagtgtgaatgaaactcaaagtccctggggataaagcatgcttggagtgtatgaagaCATATTTAGAA----------------------GAACATGAGTA--------------AAAATGAGGTGAGAAGCAGCCAGTTTACAGCACTTACACACTGACA-------------------------AGGTggctttgagcagaggaaggacatgacctgtttccttacaagggtag---ggtggctggtactggggaatacactat-----------aagtaagccagggaacaactaagggacataatt-gcacaagaggtcatgatggcttagGAAGAACTGGCTACACAGCCTTTGTGTTTGATTGTTAAAATT-TTCAATGTTCAAGAGCATCTGGGTTTCCTCATCAGTCCA------GTTCCTG-----------------------------------------------------GGTAGCTTTCCCACAGGCCATGTGTCATTGTCTAAACTGTATGCTGGTGCTGAAAATCAACACTTAGCAATAGCTCTGGTAG----CTGCAAAGATGAGAAGAAAATTGTCTTATGGAGGATATAGTTCAAGGATAAAACTGTTG i mm10.chr19 C 0 I 656 e chlSab2.chr12 81125831 0 + 108555830 C e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e papAnu2.chr15 76862268 1 + 107442819 I e macFas5.chr15 80813154 10 + 112612857 I a score=84609.000000 s hg38.chr9_GL383541v1_alt 42738 104 + 171286 ggatttgccgataaaGTAACACATAAACAACTCaattaataaattaatgaattaagttcatcaatATCTGGGACCTCTGTCACTCCTCCTtgttgcaggtgggt s panTro4.chr9 68608454 104 + 137840987 agatttgccgataaaGTAACACATAAACAACTCAATTAATAAATTAATGAATTAAGTTCATCAATATCTGGGATCTCTGTCACTCCTCCTtgttgcaggtgggt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64764122 104 + 135191526 agatttgccgataaaGTAACACATAAACAACTCAATTAATAAATTAATGAATTAAGTTCATCAATATCTGGGATCTCTGTCACTCCTCCTtgttgcaggtgggt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57802326 104 - 122973662 agatttgccaataaagtgACACATAAACAACTCAACTAATAAATTAATGAATTAAGTTCATCAATATCTGGGATCTCTGTCACTCCTCCTtgttgcaggtgggt i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 111353595 99 - 210400635 agatttgctgatAAGGTGACACATAA-----CCAATTAATAAAGTATTGAATTAAGTTCATCAATATCTGGCATCTCTGTCACTCCTCATCAttgcaggtaggt i calJac3.chr1 C 0 C 0 e mm10.chr19 38012172 656 - 61431566 I e chlSab2.chr12 81125831 0 + 108555830 C e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e papAnu2.chr15 76862268 1 + 107442819 I e macFas5.chr15 80813154 10 + 112612857 I a score=107055.000000 s hg38.chr9_GL383541v1_alt 42842 110 + 171286 tccctagaagcaaaccccaaggagattagcaagtaggaagtttatgagagggtgctcctgggatcaacacctgaggaagagaaagggaagaatcaggactggacagaggt s panTro4.chr9 68608558 110 + 137840987 tccctagaagcaaaccccaaggagattagcaagtaggaagtttatgagagggtgctcctgggatcaacacctgaggaagagaaagggaagaatcaggactggacagaggg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64764226 110 + 135191526 tccctagaagcaaaccccaaggagattagcaagtaggaagtttatgagaggatgctcctgggatcaacacctgaggaagagaaagggaagaatcaggactggacagaggg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57802430 110 - 122973662 tccctagaagcaagccccaaggagattagcaagcaggaagtttatgagagggtgctcctgggatcaacacctgaggaagagaaagggaagaatcaggactggacagaggg i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 111353694 110 - 210400635 tccctagaagcagagcccaaggagattagcatgcaggaagttgatgagagggtgctcctgggatcaacacccgaggaagagaaaggatggaatcaggagtggacagaggg i calJac3.chr1 C 0 C 0 s mm10.chr19 38012828 109 - 61431566 tccctgggtgtaaaccctaggaggttcactgtacaggaaacttagaagagcattcttgagggtccatctccaggaaatgggtgaaggaggaaacagaatttggtaagga- i mm10.chr19 I 656 C 0 e chlSab2.chr12 81125831 0 + 108555830 C e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e papAnu2.chr15 76862268 1 + 107442819 I e macFas5.chr15 80813154 10 + 112612857 I a score=19764.000000 s hg38.chr9_GL383541v1_alt 42952 12 + 171286 agaaattgtgtg s panTro4.chr9 68608668 12 + 137840987 agaaattgtgtg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64764336 12 + 135191526 agaaattgtgtg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57802540 12 - 122973662 agaaattgtgtg i nomLeu3.chr1a C 0 C 0 s papAnu2.chr15 76862269 12 + 107442819 AGAAACTGTGCT i papAnu2.chr15 I 1 C 0 s chlSab2.chr12 81125831 12 + 108555830 agaaactgtgct i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111353804 12 - 210400635 agaaattgtgct i calJac3.chr1 C 0 C 0 s mm10.chr19 38012937 12 - 61431566 aaacgctgggct i mm10.chr19 C 0 C 0 e canFam3.chr1 35248368 2537 - 122678785 I e rheMac3.chr15 79732369 10 + 112192347 I e macFas5.chr15 80813154 10 + 112612857 I a score=841376.000000 s hg38.chr9_GL383541v1_alt 42964 281 + 171286 gcaatgcaacctcagtgaaggcctcagcctacttcatggatgttctagctccgggatgacacttttgtgtttttccaagtcggggaaagagggttaaac---------cctgtgtctagtatccagaa--------aaaggcatgtgatcttggatgtgccagctattttcactgaaggcattccccagagagggctgaccaggggagg-c---tgctttccagtggctgtcccaccatctggagtaataagcccttcagtcctgaagagggatctgcagcacagcatctcca-caTCCCATG---- s panTro4.chr9 68608680 282 + 137840987 gcaatgcaacctcagtgaaggccccagcctacttcatggatgttctagctccgggatgacccttttgtgtttttccaagtcggggaaagagggttaaac---------cctgtgtctagtatccagaa--------aaaggcatgtgatcttggatgtgccagctattttcactgaagccattccccagagagggctgaccaggggagggc---tgctttccagtggctgtcccaccatctggagtaataagcccttcagtcctgaagagggatctgcagcacagcatctcca-caTCCCATG---- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64764348 282 + 135191526 gcaatgcaacctcagtgaaggccccagcctacttcgtggatgttctggctctgggatgacccttttgtgtttttccaagtcggggaaagagggttaaac---------cctgtgtctagtatccagaa--------aaaggcatgtgatcttggatgtgccagctattttcactgaaggcattccccagagagggctgaccaggggagggc---tgctttccagtggctgtcccaccatctggagtaataagcccttcagtcctgaagagggatctgcagcacagcatctcca-cGTCCCATG---- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57802552 290 - 122973662 gcaatgcaacctcagtgaaggccccagcctacttcatggatgttctggctgtgggatgactcttctgtgtttttccaagtaggggaaagagggttaaac---------cctgtatctagtatccagaaaaaggcgtaaaggcgtgtgatcttggttgtaccagctattttcactgaaggcattccccagagagggctgtccaggggagggc---tgctttccagtggctgtcccaccatctggagtaataaacccttcagtcctgaagagggatctgcagcacagcatcTCCA-TGTCCCATG---- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79732379 272 + 112192347 GCAATGCAACCTCAGTGAAGGCCCCAGCCTACTTCATGAATGTTCTGGCTCTCGGATGACCCTTTTGTGTTTTTCCAAGTCGGGGAAAGAGGGTTAAAC---------CCTATGTCTAGTATccagaa--------aaaggcatgtgatcttggatgtgccagctattttcactga-------------agaggtctgaccaggggctttccagtgctttccagtggctgtcccaccatctggggtaataagcccgtcagtcctgaagagggatctgcagtgcagcaTCTCCA-TGTCCCATG---- i rheMac3.chr15 I 10 C 0 s macFas5.chr15 80813164 272 + 112612857 gcaatgcaacctcagtgaaggccccagcctacttcatgaatgttctggctctcagatgacccttttgtgtttttccaagtcggggaaagagggttaaac---------cctatgtctagtatccagaa--------aaaggcatgtgatcttggatgtgccagctattttcactga-------------agaggtctgaccaggggctttccagtgctttccagtggctgtcccaccatctggggtaataagcccgtcagtcctgaagagggatctgcagtgcagcaTCTCCA-TGTCCCATG---- i macFas5.chr15 I 10 C 0 s papAnu2.chr15 76862281 272 + 107442819 GCAATGCAACCTCAGTGAAGGCCCCAGCCTACTTCATGAATGTTCTGGCTCTCGGATGACCCTTTTGTGTTTCTCCAAGTCGAGGAAAGAGGGTTAAAC---------CCTATGTCTAGTATCCAGAA--------AAAGGCATGTGATCTTGGATGTGCCAGCTATTTTCACTGA-------------AGAGGTCTGACCGGGGGCTTTCCAGTGCTTTCCAGTGGCTGTCCCACCATCTGGGGTAATAAGCCCTTCAGTCCTGAAGAGGGATCTGCAGTGCAGCATCTCCA-TGTCCCATG---- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81125843 272 + 108555830 gcaatgcaacctcagtgaaggccccagcctgcttcattaatgttctggctctcggatgacccttttgtgtttctccaagtcggggaaagagggttaaac---------cctatgtctagtatccagaa--------aaaggcatgtgatcttggatgtgccagctattttcactga-------------agaggtctgaccaggggctttccagtgctttccagtggctgtcccaccatctggggtaataagcccatcagtcctgaagagggatctgcagtgcagcatctcca-tgtccCATG---- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111353816 289 - 210400635 gcaatgtaacctcagtgaaggccccagcctacttcatggatgttctggcactgggaggatactt-tgtgtttttccaagtcaggagaaaagggtcaaacctttatatacctgtgtctagtatccagaa--------aagggc-tgtgatcttggatatgccagctgttttcactgaaggcattccccagagagggctgaccagaggaggac---tgctttccagtggctgtcccaccacctggggtaataagctcttcagtcctgaagagggatctgcagcacagcatcTCCA-TGTCCCATG---- i calJac3.chr1 C 0 C 0 s mm10.chr19 38012949 283 - 61431566 gagatgcaaactcaatgaaggctaaaacttacttcatgaacattgaggcactgggaaggccctt-taccttgttccaagctgggacaagggaatcaagcctttaaatccATTTCTTTTACACCCAGGA--------AAA-GCATGGGGTCTCAGGTGTGCCAGCTCCCTTCACCAAAGACACTCACC--ATCAAACTATCCAGCTGGTT-C---TGCCTTCCAGCAACTCTCTGATGGGTTGGAG---GAGGGTCTCCCATTCTGCAGGA-----CGCATGTCAATGTCTTCAGCATTCTGTGACCT i mm10.chr19 C 0 C 0 e canFam3.chr1 35248368 2537 - 122678785 I a score=1077883.000000 s hg38.chr9_GL383541v1_alt 43245 325 + 171286 GAGGGACACTCCCTGTCCCTCATCTGTGGCATAGATATTGTCAGGATACTCTTTTCTGCT-----------------------------------------------------------------TGCTCAGATACAGCTTCCAGTAGATTTCCGGGCAGCTACCAACAATCCCATCAAATGGCTCTGCAGTGGAAC---TCATTTACCTTACACATTTTAGG-----AAAAAGGTTGCCCATATCCCTACCTTCAGCAAAGTTATCAAGTACAGGA-CAAAAAGTGTACAGTGAGCAA-AA-AGTAATTGATTCCAAGCTCTTTC-ATCTGAAAAGGAGCTCAGGTGATCCTAGGGGCCAGTCATTGGCTGGTATGATCT-T-ACATGTGTTTATTATCTAAG s panTro4.chr9 68608962 325 + 137840987 GAGGGACACTCCCTGTCCCTCATCTGTGGCATAGATATTGTCAGGGTACTCTTTTCTGCT-----------------------------------------------------------------TGCTCAGATACAGCTTCCAGTAGATTTCCGGGCAGCTACCAACAATCCCATCAAATGGCTCTGCAGTGGAAC---TCATTTACCTTACACATTTTAGG-----AAAAAGGTTGCCTATATCCCTACCTTCAGCAAAGTTATCAAGTACAGGA-CAAAAAGTGTACAGTGAGCAA-AA-AGTAATCGATTCCAAGCTCTTTC-ATCTGAAAAGGAGCTCAGGTGATCCTAGGGGCCAGTCATTGGCTGGTATGATCT-T-ACATGTGTTTATTATCTAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64764630 325 + 135191526 GAGGAGCACTCCCTGTCCCTCATCTGTGGCATAGATATTGTCAGGATACTCTTTTCTGCT-----------------------------------------------------------------TGCTCAGATGCAGCTTCCAGTAGATTTCCGAGCACCTACCGACAATCCCATCAAATGGCTGTGCAGTAGAAC---TCATTTGCGTTACACATTTTAGG-----AAAAAGGTTGCCCATATCCTTACCTTCAGCAAACTTATCAAGTACAGGA-CAAAAAGTGTATAGTGAGCAA-AA-AGTAATCGATTCCAAGCTCTTTC-ATCTGAAAAGGAGCTCAGGTGATCCTAGGGGCCAGTCATTGGCTGGTATGATCT-T-ACATGTGTTTATTATCTAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57802842 325 - 122973662 GAGGGACACTCCCTGTCCCTCAACTGTGGCATAGATATTGTCAGGATACTCTTTTCTGCT-----------------------------------------------------------------TGCTCGGATACAGCTTCCAGTAGATTTCCAGGCAGCTACCAACAATCCCATCAAATGGCTGTGCAGTGGAAC---TCATTTGCCTTACACATTTTAGG-----AAAAAGGTTGCCCATATCCCTACCTTCAGCAAACTTATCAAGTACAGGA-CAAAAAGTGTACAGTGAGCAA-AA-AGTAATCGATTCCAAGCTCTTTC-ATCTGAAAAGGAGCTCAGGTGATCCTAGGGGCCAGTCATTGGCTGGTATGATCT-T-ACATGAGTTTATAATCTATG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79732651 390 + 112192347 GTGGGACACTCCCTGTCCCTCATCTGTGGCATAGATATTGTCAGGATACTCTTTTCTGCTTGCTCAGATACAGCTTCCAGTAGACTTCTGGGCAGTTACCATCAGTCCTAGCAAATGGCTGTGCGTGCTCAGATACAGCTTCCAGTAGACTTCCGGGCAGTTACCATCAATCCTATCAAATGGCTGCGCAGTGGAAC---TCATTTGCTTTACACATTTTAGG-----AAAAAGGTTACCCATATCCCTACCTTCAGCAAACTTATCAAGTACAAGA-CAAAAAGTGTACAGTGAGCAA-AA-AGTAATCGATTCCAAGCTCTTTC-ATCTGAAAAGGAGATCAGGTGATCCTAGGGGCCAGTCATTGGCTGGTATGATCT-T-ACATGAGTTTATTACCTAAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80813436 325 + 112612857 GTGGGACACTCCCTGTCCCTCATCTGTGGCATAGATATTGTCGGGATACTCTTTTCTGCT-----------------------------------------------------------------TGCTCAGATACAGCTTCCAGTAGACTTCCGGGCAGTTACCATCAATCCTAGCAAATGGCTGTGCAGTGGAAC---TCATTTGCTTTACACATTTTAGG-----AAAAAGGTTGCCCACATCCCTACCTTCAGCAAACTTATCAAGTACAAGA-CAAAAAGTGTACAGTGAGCAA-AA-AGTAATCGATTCCAAGCTCTTTC-ATCTGAAAAGGAGATCAGGTGATCCTAGGGGCCAGTCATTGGCTGATATGATCT-T-ACATGAGTTTATTACCTAAC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76862553 324 + 107442819 GAGGGACGCT-CCTGTCCCTCATCTGTGGCATAGATATTGTCGGGATACTCTTTTCTGCT-----------------------------------------------------------------TGCTCAGATACAGCTTCCAGTAGATTTCCGGGCAGCTACCATCAATCCTATCAAATGGCTGTGCAGTGGAAC---TCATTTGCTTTACACATTTTAGG-----AAAAAGGTTGCCCATATGCCTACCTTCAGCAAACTTATCAAGTACAAGA-CAAAAAGTGTACAGTGAGCAA-AA-AGTAATCGATTCCAAGCTCTTTC-ATCTGAAAAGGAGATCAGGTGATCCTAGGGGCCAGTCATTGGCTGGTATGATCT-T-ACATGAGTTTATTACCTAAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81126115 325 + 108555830 GAGGGACACTCCCTGTCCCTCATCTGTGGCATAGATATTGTCGGGATACTCTTTTCTGCT-----------------------------------------------------------------TGCTCAGGTACAGCTTCCAGTAGATTTCCAGGCAGCTACCATCAATCCTATCAAATGGCTGTGCAGTGGAAC---TCATTTGCTTTACACATTTTAGG-----AAAAAGGTTGCCCATATCCCTACCTTCAGCAAACTCATCAAGTACAAGA-CAAAAAGTATACAGTGAGCAA-AA-AGTAATCGATTCCAAGCTCTTTC-ATCTGAAAAGGAGATCAGGTGATCCTAGGGGCCAGTCATTGGCTGGTATGATCT-T-ACATGAGTTTATTACCTAAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111354105 325 - 210400635 GAGGGACACTTCCTGTCCCTCATCTGTGACATAGATATTGTCATGCTACTCTTTTCTGCC-----------------------------------------------------------------TGATTAGATACAGCTT-CAGTAGATTTCCAGGCAGCTACCAATGGTCCCATCAAATGGCTGTGCAGTGAAAT---CCATTTGCCTTACACATTTTAGG-----AAAAAGATTACCCATATGCCGACCTTCAGCAAACTTGGAGTGTATGGGG-CAAAAACTGTACAGCAAGCAA-AA-AGTAATCACTTCCAAGCTCTTTC-ATCTGAAAAGGAGCTCAGGTGATCCTAGGGACCAGTCATTAACTGGTATGGTCTCT-AGGTGAGTTTATTGTCTAAG i calJac3.chr1 C 0 C 0 s mm10.chr19 38013232 300 - 61431566 AGAATATAATCCATGTCCCT-GTCTATGGCACATATACAGTCATATTATTTTTTCCTGCA-----------------------------------------------------------------TATCCAGATACAGTCATCAGCAACTTTCTGGTCAGTTGTCA-------------------GTGAAATAAAACATAATATTCTCTTTGTGGGGTTTACGATAATAATAAAAGTATCCATGATCATACCCTTAATAAGTTTTCAGTGTTCAAGA-GCAAAACTGCACACACAGCAAGAA-AATTACTAGACTCAGGCTGATCT-GGCT---------------TGCACCTTCCAGTCTGTTTTTGGCTAATACAGTCT-TAACATGAGTTTTGCACCTGAG i mm10.chr19 C 0 C 0 s canFam3.chr1 35250905 288 - 122678785 GAAAAACACTCCATGCCCTGCGTCTATGGCATA---------AGACCAC----------------------------------------------------------------------------TGT-------------------GGCTTCCAGGCAGCTGCCAACACTCACTGC-CATGACTGTGCAATGAAAC---CTATTTGCTTTATGTACTTGAGG-----ATGAAG-TTGTCCATGCCCCTAGCCTGAGCAAGTTTAGAGGGCACAAGAGCAAAAACTGTACATAAAGCAA-AAGACTAGTAGATTCAGAGGTGTTTTGATCTGACAAGGTGCTCAGGTGGCCCTAAGGGCCAGTCATTGGCTGGTATGGTCTTT-ATATGAGTTTATTATCTAAT i canFam3.chr1 I 2537 I 507 a score=1672847.000000 s hg38.chr9_GL383541v1_alt 43570 475 + 171286 GATAGGATCTTTCAGTTCGGTGATGT-----------------AAGTGGGAGATGCAGCTCATTTGGATAATTTAAGAAAATCACATTGTTTATGAGGAAAACATCTCTTAGACACTCTTTCTAGGTGCAATAGGCCTGCCTGCCAGTATGGCCC-ACCAGTGTGGTGTTGCCATGACAAAAACTCCTCATTGAGTCACTAGATCAGAGAAGCAGACCTCAGTGTGCCACCTTGGGCAGCCCCATGCAGGTCTGAATGTGCTGagc-----catgtgatcttataca---agga-----cttgt--ctacattttattttcaacatctttaaaatgaagagaatccctaatctgtgtatcccataaagagtc--------ctgtgtggctcaaatgaACTCGTCTGAGCTGATACAAATTACAAACTTTAAAGCATGCTACCATCGTGAGCTGGTATAGGACTTATAAAGAGAATCCAGAGAAGAGTTAAGCTTGATGGTTTTGACATCTCAAAAG s panTro4.chr9 68609287 475 + 137840987 GATAGGATCTTTCAGTTTGGCGATGT-----------------AAGTGGGAGATGCAGCTCATTTGGATAATTTAAGAAAATCACATTGTTTATGAGGAAAACATCTCTTAGACACTCTTTCTAGGTGCAATAGGCCTGCCTGCCAGTATGGCCC-ACCAGTGTGGTGTTGCCATGACAAAAACTCCTCATTGAGTCACTAGATCAGAGAAGCAGACCTCAGTGTGCCACCTTGGGCAGCCCCATGCAGGTCTGAATGTGCTGagc-----catgtgatcttataca---agga-----cttgt--ctacattttattttcaacatctttaaaatgaagagaatccctaatctgtgtatcccataaagagtc--------ctgtgtggctcaaatgaactcatttgagctgatacaaattacaaactttaaagcatgctaCCATTGTGAGCTGGTATAGGACTTATAAAGAGAATCCAGAGAAGAGTTAAGCTTGACAGTTTTGACATCTCAAAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64764955 481 + 135191526 GATAGGATCTTTCAGTTTGGTGATGT-----------------AAGTGGGAGATGCAGCTCTTTTGGATAATTTAAGAAAATCACATTGTTTATGAGGAAAACATCTCTTAGACACTCTTTCTAGGTGCAATAGGCCTGCCTGCCAGTATGGCCCAACCAGTGTGGTGTTGCCATGACAAAAACTCTTCATTGAGTCACTAGATCAGAGAAGCAGACCTCAGTGTGCCACCTTGGGCAGCCCCATGCAGGTCTGAATGTGCTGagc-----catgtgatcttataca---aggacttatcttgt--ctacattttattttcaacatctttaaaatgaagagaatccctaatctgtgtatcccataaagagtc--------ctgtgtggctcaaatgaACTCGTTTGAGCTGATATAAATTACAAACTTTAAAGCATGCTACCATTGTGAGCTGGTATAGGACTTATAAAAAGAATCCAGAGAAGAGTTAAGCTTGACAGTTTTGACATCTCAAAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57803167 480 - 122973662 GATAGGATCTTTCAGTTTGGTGATAT-----------------AAGTGGGAGATGCAGCTCTTTTGGATAATTTAAGAAAATCACACTGTTTATGAGGAAAACATCTCTTAGACACTCTTTCTAGGTGCAATAGGCCTGCCTGCCAGTATGGCCC-ACCAGTGTGGTGTTGCCATGACAAAAACTCCTCACTGAGTCACTAGATCAGACAAGCAGACCTCAGTGTGCCACCTTGGGCAGCCCCATGAAGGTCTGAATGTGCTGagc-----catgtgatcttataca---aggatttatcttgt--ctacattttattttcaacatctttaaaatgaagagaatctctaatctgtatatcccataaagagtc--------ctgtgtggctcaaatgaactcgtttgagctgatacaaattataaactttaaagcatgctaCCATTGTGAGCTAGTATAGGACTTATAAAGAGAATCCAGAGAAGAGTTAACCTTGACAGTTTTGACATCTCAAAAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79733041 474 + 112192347 GAAAGGATCTTTCAGTTTGGTGATGT-----------------AAGTGGGAGATGCAGCTCTTTTGGATAATTTAAGAAAATCACATTGCTGATGAGGAAAACATCTCTTAGACACTCTTTCTAGCTGCAATAAGCCCGCCTGCCAGTATGGCCC-ACCACTGTGGTGTTGCCATGACGAAAACTCATCACTGAGACACTAGATCAGAGAAGCAGACCTTAGTGTGCCACCTTGGGCAGCCCCATGCAGGTCTGAATGTGCTGagc-----catgtgatcttataca---agga-----cttgt--ctacatttcattttcaacatcattaaaatgaagagaatccccaatctgtgtatcccataaagagtc--------ccgtgtggctcaaatgaactagttcgagctgatacaaattacaaactttaaagcatgctaCCGT-ATGAGCTGGTGTAAGACTTATAAAGAGAATCCAGAGAAGAGTTAAGCTTGACAGTTTTGACATCTCAAAAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80813761 474 + 112612857 GAAAGGATCTTTCAGTTTGGTGATGT-----------------AAGTGGGAGATGCAGCTCTTTTGGATAATTTAAGAAAATCACATTGCTGATGAGGAAAACATCTCTTAGACACTCTTTCTAGCTGCAATAAGCCCGCCTGCCAGTATGGCCC-ACCACTGTGGTGTTGCCATGATGAAAACTCATCACTGAGACACTAGATCAGAGAAGCAGACCTTAGTGTGCCACCTTGGGCAGCCCCATGCAGGTCTGAATGTGCTGAGC-----CATGTGATCTTATACA---AGGA-----CTTGT--CTACATTTCATTTTCAACATCATTAAAATGAAGAGAATCCCCAATCTGTGTATCCCATAAAGAGTC--------CCGTGTGGCTCAAATGAACTAGTTCGAGCTGATACAAATTACAAACTTTAAAGCATGCTACCGT-ATGAGCTGGTGTAAGACTTATAAAGAGAATCCAGAGAAGAGTTAAGCTTGACAGTTTTGACATCTCAAAAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76862877 474 + 107442819 GAAAGGATCTTTCAGTCTGGTGATGT-----------------AAGTGGGAGATGCAGCTCTTTTggataatttaagaaaatcacaTTGCTTATGAGGAAAACATCTCTTAGACACTCTTTCTAGCTGCAATAAGCCCGCCTGCTAGTATGGCCC-ACCATTGTGGTGTTACCATGACAAAAACTCATCACTGAGACATTAGATCAGAGAAGCAGACCTTAGTGTGCCACCTTGGGCAGCCCCATGCAGGTCTGAATGTGCTGAGC-----CATGTGATCTTATACA---AGGA-----Cttgt--ctacattttattttcaacatcattaaaatgaagAGAATCCCCAATCTGTGTATCCCATAAAGAGTC--------CCGTGTGGCTCAAATGAACTAGTTCGAGCTGATACAAATTACAAACTTTAAAGCATGCTACCGT-GTGAGCTGGTGTAAGACTTATAAAGAGAATCCAGAGAAGAGTTAAGCTTGACAGTTTTGACATCTCAAAAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81126440 474 + 108555830 GAAAGGATCTTTCAGTTTGGTGATGT-----------------AAGTGGGAGATGCAGCTCTTTTGGATAATTTAAGAAAATCACATTGCTTATGAGGAAAACATCTCTTAGACACTCTTTCTAGCTGTAATAAGCCCGCCTGCCAGTATGGCCC-ACCACTGTGGTGTTGCCATGACAAACACTCATCACTGAGACACTAGATCAGAGAAGCAGACCTTAGTGTGCCACCTTGGGCAGCCCCATGCAGGTCTGAATGTGCTGAGC-----CATGTGATCTTATACA---AGGA-----CTTGT--CTACATTTTATTTTCAACATCATTAAAATGAAGAGAATCCCCAATCTGTGTATCCCATAAAGAGTC--------CTGTGTGGCTCAAATGAACTAGTTCGAGCTGATACAAATTATACACTTTAAAGCATGCTACCGT-GTGAGCTGGTGTAAGACTTATAAAGAGAATCCAGAGAAGAGTTAAGCTTGACAGTTTTGACATCTCAAAAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111354430 477 - 210400635 GATAGGATCTTTCAGTTTGATGATGT-----------------AAGTGGGAGATGCAGCTCTTTTGGATAATTTAAGAAAATCACTTTGTTTATGAGGAAAGCATCTCTTACACACTATTTCAAGCTGCAATAGGTCTGCCTACTGGTGTGGCCC-ACCAGTGTGGTGTCGCCATGAC---AGCTCCTCATTGAGACACTAGATCAGAGAAGCAGACCTCAGTGTACCACCTTGGGCAGCCCCATGCAGGTCTGAATGTGCTGagc-----tgtgtggtcttataca---aggacttatcctgt--ctacattttattttcaacatctttaaaatgaagagaatccctaatctgtgtatctcataaagaatc--------ctgtgtggcacaaatgaagtcatttgagctgatacaaattataaactttaaaacatgctataATTGTGAGCTGGTATAAGACTTATACAGAGAATCCAGAGACAAGTTAAGCTGGACAGTTTTGACATCTCAAAAG i calJac3.chr1 C 0 C 0 s mm10.chr19 38013532 439 - 61431566 GCT-GGGTCTTGGTATTTGCTGACATGGGC-----GGAAAGTAAAGTGGGAGATGCAGCTCTTCAGGATAACTTAATAAAATCAC----------------------TTCAGACTCCCATT-------------GTTTGAC------TATAGCCT-CATAGTATAGTGTTGCCATGGTTACAGTTCCTCATTGAGAGGCTAGGTCAGAGAATCAGATTGGAGTCCACAATTATATAT-GTTCCATCCAGGCCTACATGTGCTGAGT-----GGGGTGGTGCTGTGTGTGTGGCA-----CTTA---CTCTGCCTGAGTTCCAGTGTCTGTAACATAAAGAGAG-CCATGCTCTGTGTATCCCATGAAGAACAAAGCATAGTTGTATGGCTCAG------------GAGCAAATGCAGGTTATAAACTGTAAAGCACAGTGCAC--AGAGGATGTTATAGAACTTAAAGATAGAATCCAGAGCAGAGTCAAGCTTGACAGAGTTGACATCCTAAAAG i mm10.chr19 C 0 C 0 s canFam3.chr1 35251700 440 - 122678785 GATAGGATCTTTCAGTTTGGTGACAAAAGAAAGTGGGAAAGTCAAATGGGAGATGCAGCTGTTTCAGATAGCTTAAGAAAATCACTTTGCTCACAG--------------------------TGGCTGTAATAGGCCTGCATGGCCATATGGCTC-ACTGGTGTGGTGTCACCGTAGCCACAGCTCCTTGCCAAGGAGCCGGATCAGAGAACCAGATCTCAACTTATCA-------CACACCCAGAC---TCTGCATGTGCTGAGCAGACACAAGTGGTC-TATACA---AGAC-----ATTGTTCCTAAATCTTATTTTAAACTTCTTCAAAATGAGGAAAA--------------GTCCTGTAAAGAACA--------Ctgtgaagttcacatgagctggttgg-----gtgtgcattataaactgtaaagcactatacgat--tgtGCTATTAGAACACTTACAAAGAGAATCAAGAGCCAAGTTGAGCCTGACAGC-TTGCAATCTTAAAAA i canFam3.chr1 I 507 I 499 a score=1077268.000000 s hg38.chr9_GL383541v1_alt 44045 280 + 171286 TATGAGAGACTATAAAAA---------TATTTATTTTGGTTAGCTTGTGAAATAGGCAAAGGGCTATTTTATGAGTATTCTGGGCACAGATGCTACTTCTTAAAAGGCACGATAATCACTCTGCATCTAGAGTAGCCTGTAT---------TT-GAG-GCACAGCCTGGAGTTGGGGAT-CAAGTGCAACAGCATTTATTGAGCACCTCCTCTGTGGGGGTAGGGAGCACTGGGCTGGATAGGATTCAATGACAGTGGAGGCAGGGACCTTTTCTTCAAAAGACTAAAAGCCAATAGGGgg s panTro4.chr9 68609762 290 + 137840987 TATGAGAGACTATAAAAAAGGGAAAAATATTTATTTTGGTTAACTTGTGAAATAGGCAAAGGGCTATTTTATGAGTATTCTGGGCACAGATGCTACTTCTTAAAAGGCACGATAATGACTCTGCATCTAGAGTAGCCTGTAT---------TTTGAG-GCACAGCCTGGAGTTGGGGAT-CAAGTGCAACAGCATTTATTGAGCACCTCCTCTGTGGGGGTAGGGAGCACTGGATTGGATAGGATTCAATGACAGCGGAGGCAGGGACCTTTTCTTCAAAAGACTAAAAGCCAATAGGGgg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64765436 289 + 135191526 TATGAAAGACTATAAAAATGGGAAAAATATTTATTTTAGTTAACTTGTGAAATAGGCAAAGGGCTATTTTATGAGTATTCTGGGCACAGATGCTACTTCTTAAAAGGCACGATAATGACTCTGCATCTAGAGTAGCCTATAT---------TT-GAG-GCACAGCCTGGAGTTGGGGAT-CAAGTGCAACAGCATTTATTGAGCACCTCCTCTGTGGGTGTAGGGAGCACTGGGCTGGATAGGATTCAATGACAGTGGAGGCAGGGACCTTTTCTTCAAAAGACTAAAAGTCAATAGGGgg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57803647 289 - 122973662 TATGAGAGACTATAAAAATGGGAAAAATATTTATTTTAGTTAACTTGTGAAATAGGTAAAGGGCTATTTTATGAGTATCCTGGGCACAGATGCTACTTCTCAAAAGGCACGATAATGACTCTGCATCTAGACTAGCCTGCAT---------TT-GAG-GCACAGCCTGGAGTTGGGGAT-CAAGTGCAACAGCATTTATTGACCACCTCCTCTGTGGGGGTAGGGAGCACTGGGCTGGATAGGATTCAATGACAGTGGAGGCAGGGACCTTTTCTTCAAAGGACTAAAAGCCAATAGGGgg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79733515 288 + 112192347 TATGAGAGACGATAAAAATGGGGAAAATATTTATTTTAGTTAACTTGTGAAATAGGCAAAGGGCTCTTTTATGAGTATTCTGGGCACAGATGTTACTTCTTAAAAGGCATGATAATGACTCTGCATCTAGAATAGCCTGTGT---------TT-GAG-GCACAGCCTGGAGTTGGGGAT-CAAGTGCAACAGCATTTACTAAGCACCTCCTCTGTGGGGGT-GGGAGCACTGCGCTGGGTAGGATTCAATGACAGTGGAGGCAGGGACCTTTTCTTCAAAAGACTAAAAGCCAATAGGGgg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80814235 288 + 112612857 TATGAGAGACGATAAAAATGGGGAAAATATTTATTTTAGTTAACTTGTGAAATAGGCAAAGGGCTCTTTTATGAGTATTCTGGGCACAGATGTTACTTCTTAAAAGGCATGATAATGACTCTGCATCTAGAATAGCCTGTGT---------TT-GAG-GCACAGCCTGGAGTTGGGGAT-CAAGTGCAACAGCATTTACTGAGCACCTCCTCTGTGGGGGT-GGGAGCACTGCGCTAGGTAGGATTCAATGACAGTGGAGGCAGGGACCTTTTCTTCAAAAGACTAAAAGCCAATAGGGgg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76863351 288 + 107442819 TATGAGAGACgataaaaatagggaaaatatttattttagttaacTTGTGAAATAGGCAAAGGGCTCTTTTATGAGTATTCTGGGCACAGATGCTACTTCTTAAAAGGCATGATAATGACTCTGCATCTAGAATAGCCTGTAT---------TT-GAG-GCACAGCCTGGAGTTGGGGAT-CAAGTGCaacagcatttactgagcacctcctctgtgggggt-gggagcaCTGGGCTGGATAGGATTCAATGACAGTGGAGGCAGGGACCTTTTCTTCAAAAGACTAAAAGCCAATaggggg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81126914 288 + 108555830 TATGAGAGACGATAAAAATGGGGAAAATATTTATTTTAGTTAACATGTGAAATAGGCAAAGGGCTCTTTTATGAGTATTCTGGGCACAGATGCTACTTCTTAAAAGGCATGATAATGACTCTGCATCTAGAATAGCCTGTAT---------TT-GAG-GCACAGCCTGGAGTTGGGGAT-CAAGTGCAACAGCATTTACTGAGCACCTCCTCTGTGGGGGT-GGGAGCACTGGGCTGGATAGGATTCAATGACAGTGGAGGCAGGGACCTTTTCTTCAAAAGACTAAAAGCCAATAGGGgg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111354907 289 - 210400635 CATGAGAGACTGTAAAAATAGGGAAAATATTTATTTTAGTTAACTTGTGAAATAGGCAAAGGGGTATTTTGTGAGTATTCTGGGCACACATGCTACTTCTTAAAAGGCACAATAATGACTCTGGATCTAGGGCAACTTGTAT---------TT-GAG-GCATAACCTAGAGCTGGGGat-tcagtgcaacagcatttactgagcacctcctctatgggtgtagggagcactgggctggataggattcagtgacagtggaggcatggaccttttcttcaaaagattaaaagccagtagatga i calJac3.chr1 C 0 C 0 s mm10.chr19 38013971 285 - 61431566 TATGCACGACTATACAAGTAAGGAAGATACTTATGTTACTTAAGCTGGGAACGAGGCAAAGGTTATTTTTGTGATTATTTTGTATATGCACACCACTT---AAAAGGCAGGATAGGAACTGTAGATCTAGGGCATTTAGTGC---------TTAGAGAGCACAGCCTGGAACT-GGCAT-CAGGTGAAACAGCTTTTGTTGGACATCTTTTCTATAGGGCT-GGGAGCATTGGTTTGG-CAGTATTGTGTGACAATGAAGGCATTGATCCTTCTCTCCAAAGATAAAAAGTCAGGAGAGCA i mm10.chr19 C 0 C 0 s canFam3.chr1 35252639 298 - 122678785 tatGAGAGACTATAAATGTAAGGAAAATACTTATTTTAGTTAACTTGTGAATTAGGCAAAGGACTGTTTTATGAATAGTCAAGGCACACATCCTACTTCCAAAAAGGCACAATAATGAGTCTGCGTCTAGAGCACTGTGTATGCCAAGGCCTT-GTG-GTGGTAGTGGGGGGTGGGGATAAAAAAAAAACAGGATTTATTGTGAATCTCTGTTATGAGAGT-GCAGGAGATGGGCCAGATAGAGTTCAGCCATGATGAAGACAAGATCCTATCTCTCAAAAGACTACAAACCAATAGGAAG i canFam3.chr1 I 499 C 0 a score=10112.000000 s hg38.chr9_GL383541v1_alt 44325 3 + 171286 cca s panTro4.chr9 68610052 3 + 137840987 cta i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64765725 3 + 135191526 cca i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57803936 3 - 122973662 cca i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79733803 3 + 112192347 cca i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80814523 3 + 112612857 cca i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76863639 3 + 107442819 cca i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81127202 3 + 108555830 cca i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111355196 3 - 210400635 cca i calJac3.chr1 C 0 C 0 s mm10.chr19 38014256 3 - 61431566 CAA i mm10.chr19 C 0 C 0 e canFam3.chr1 35252937 0 - 122678785 C a score=126073.000000 s hg38.chr9_GL383541v1_alt 44328 41 + 171286 ggtacagtggctcatgcctgtaatcccaggactttgggagg s panTro4.chr9 68610055 41 + 137840987 ggtacagtggctcatgcctgtaatcccaggactttgggagg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64765728 41 + 135191526 ggtacagtggctcatgcctgtaatgcaaggactttgggagg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57803939 41 - 122973662 ggtacagtggctcatgcctgtaatcccaggactttgggagg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79733806 41 + 112192347 ggtacagtggctcatgcctgtaatcccagcactttgggagg i rheMac3.chr15 C 0 I 172 s macFas5.chr15 80814526 41 + 112612857 ggtacagtggctcatgcctgtaaccccagcactttgggagg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76863642 41 + 107442819 ggtacagtggctcatgcctgtaaccccagcactttgggagg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81127205 41 + 108555830 ggtacagtggctcatgcctgtaaccccagcactttgggagg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111355199 40 - 210400635 ggtacagtggctcatgcctgtaa-cccagcaatttgggagg i calJac3.chr1 C 0 C 0 e mm10.chr19 38014259 0 - 61431566 C e canFam3.chr1 35252937 0 - 122678785 C a score=555547.000000 s hg38.chr9_GL383541v1_alt 44369 244 + 171286 ccatggtgggtagatcacttgaggt-aggagtttgagaccagcctggccaacacagtgaaaccccatctctactaaaaatacaacaacaacaacaaattagccgggcgtggtggcaggcacctgtaatcctagctactcgggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgagatcgcaccactgcattccagcctggttgacagagtgagactccctccatcac s panTro4.chr9 68610096 244 + 137840987 ccatggtgggtagatcacttgaggt-aggagtttgagaccagcctggccaacacagtgaaaccccgtctctactaaaaatacaacaacaacaacaaattagccgggcgtggtggcaggcacctgtaatcctagctacttgggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgagattgcgccactgcattccagcctgggtgacagagtgagactccctccatcac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64765769 244 + 135191526 ccatggtgggtagatcacttgaggt-aggagtttgagaccagcctggccaacacagtgaaaccccatctctactaaaaatacaacaacaacaacaaattagccgggcatggtggcaggcaccagcaatcctagctacttgggaggctgaggcaggagaattgcttgaacccgggaggcggagtttgcagtgagatcgcgccattgcattccagcctgggtgacagagtgagactccctccatccc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57803980 241 - 122973662 ccatggtgggtagatcacttgaggt-aggagtttgagaccagcctggccaacacagtgaaaccccatctctactaaaaat---acaacaacaacaaattagctgggtgtggtggcaggcacctgtaatcctagctactggggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagatcgtgccactgcgttccagcctgggtgacagagtgagactccgtcCATCAC i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80814567 244 + 112612857 ccatggtgggtggatcacttgaggt-aggagtttgagaccagcctggccaacacagtgaaaccccatccctacgaaaaataccacaacgacaaaaaattagccgggcgtggtggcaggcacctgtaatcccagctacttggaaggccgaggcaggagaattgcttgaacctgggaggcggaggtaggagtgagatcgcgccactgcattccagcctgggtgacagaatgagactctctccatctc i macFas5.chr15 C 0 I 19 s papAnu2.chr15 76863683 244 + 107442819 ccatggtgggtagatcacttgaggt-aggagtttgagaccagcctggccaacacagtgaaaccccatccctacgaaaaatacaacaacaacaaaaaattagccaggcgtggtggcaggcacctgtaatcccagctacttgggaggccgaggcaggagaattgcttgaacctgggaggcggaggtaggagtgagatcgcgccactgcattccagcctgggtgacagaatgagactctctccatctc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81127246 244 + 108555830 ccatggtgggtagatcacttgaggt-aggagtttgagaccagcctggccaacacagtgaaaccccatccctacgaaaaatacaacaacaacaaaaaattagccgggcatggtggcaggcacctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggcggaggtaggagtgagatcgcaccactgcattccagcctgggcgacaaaatgagactctctccatctc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111355239 244 - 210400635 ccatatggtgtggatcacttgaggtcaggagtttgagaccagcctggccaacacagcgaaacctagtctc-actaaaaatgcaacaccaccaccacattcgctgggcatggtagcaggcacctgtaatcccaggtacttgggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgagatcacaccactgcattccagcctgagtgacagagtgaggatctgtcccaaac i calJac3.chr1 C 0 C 0 e mm10.chr19 38014259 0 - 61431566 C e canFam3.chr1 35252937 0 - 122678785 C e rheMac3.chr15 79733847 172 + 112192347 I a score=48156.000000 s hg38.chr9_GL383541v1_alt 44613 31 + 171286 -aaaaaaaaaaaaaaaaaaa---------GGCAATAGGGAA s panTro4.chr9 68610340 40 + 137840987 -aaaaaaaaaaaaaaaaaaaaaaaaaaaaGGCAATAGGGAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64766013 27 + 135191526 -agaaaaaaaaaaaaa-------------GGCAATAGAGAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57804221 25 - 122973662 -ACACGCAAAAAAA---------------GGCAATAGGGAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79734019 31 + 112192347 -aaaaaaaaaaaaaaaaaaa---------GACGATAGGGAA i rheMac3.chr15 I 172 C 0 s macFas5.chr15 80814830 31 + 112612857 -aaaaaaaaaaaaaaaaaaa---------GACGATAGGGAA i macFas5.chr15 I 19 C 0 s papAnu2.chr15 76863927 22 + 107442819 ----------aaaaaaaaaa---------gacaatagggAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81127490 28 + 108555830 ----aaaaaaaaaaaaaaaa---------GGCAATAGGGAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111355483 32 - 210400635 aaacaaacaaacaaacaaat---------gccaatagggaa i calJac3.chr1 C 0 C 0 e mm10.chr19 38014259 0 - 61431566 C e canFam3.chr1 35252937 0 - 122678785 C a score=10476.000000 s hg38.chr9_GL383541v1_alt 44644 3 + 171286 CAG s panTro4.chr9 68610380 3 + 137840987 CAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64766040 3 + 135191526 CAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57804246 3 - 122973662 CAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79734050 3 + 112192347 CAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80814861 3 + 112612857 CAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76863949 3 + 107442819 CAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81127518 3 + 108555830 CAG i chlSab2.chr12 C 0 C 0 s canFam3.chr1 35252937 3 - 122678785 CAG i canFam3.chr1 C 0 C 0 e mm10.chr19 38014259 0 - 61431566 C e calJac3.chr1 111355515 0 - 210400635 C a score=469345.000000 s hg38.chr9_GL383541v1_alt 44647 123 + 171286 GAAACAAACATCTAAATTCCAGGACA-AA-TGTGATATGTGCAACAGGACAGATACAAGCATGTCTCCAGGTCCAAAGAACGGAAGAGTTTTATTAGGGGACAGAGGACAGCAG-AAAAGTTTTCT s panTro4.chr9 68610383 123 + 137840987 GAAACAAACATCTAAATTCCAGGACA-AA-TGTGATATGTGCAACAGGACAGATACAAGCATGTCTCAAGGTCCAAAGAACGGAAGAGTTTTATTAGGGGACAGAGGACAGCAG-AAAAGTTTTCT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64766043 123 + 135191526 GAAACAAACATCTAAATTCCAGGACA-AA-TGTGATATGTGCAACAGGACAGATACAAGCATGTCTCAAGGTCCAAAGAACGGAAGAGTTTTATTAGGGGACAGAGGACAGCAG-AAAAGTTTTCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57804249 123 - 122973662 GAAACAAACATCTAAATTCCAAGACA-AA-CGTGATATGTGCAACAGGACAGATACAAGCATGTCTCAAGGTCCAAAGAATGGGAGAGTTTTATTAGGGAACAGAGGACAGCAG-AGAAGTTTTCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79734053 123 + 112192347 GAGACAAACATCTAAATTCCAGGACA-AA-TGTAATATGTGCAACAGGACAGATACAAGCATGTCTCAAGGTCCAAAGAATGGAGGAATTTTATTAGGGGACAGAGGACAGCAG-AAAAATTTTCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80814864 123 + 112612857 GAGACAAACATCTAAATTCCAGGACA-AA-TGTAATATGTGCAACAGGACAGATACAAGCATGTCTCAAGGTCCAAAGAATGGAGGAATTTTATTAGGGGACAGAGGACAGCAG-AAAAATTTTCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76863952 123 + 107442819 GAGACAAACATCTAAATTCCAGGACA-AA-TGTAATATGTGCAACAGGACAGATACAAGCATGTCTCAAGGTCCAAAGAATGGAGGAATTTTATTAGGGGACAGAGGACAGCAG-AAAGATTTTCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81127521 123 + 108555830 GAGACAAACATCTAAATTCCAGGACA-AA-TGTAATATGTGCAACAGGACAGATACAAGCATGTCTCAAGGTCCAAAGAATGGAGGAATTTGATTAGGGGACAGAGGACAGCAG-AAAAAATTTCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111355515 120 - 210400635 ---acagacatctaaATTCCAGGACG-AA-TGTGATATGTGCAACAGGACAGATACAATCATGTCTCAAGGTCCAAAGAATGGAGAAGTTT-ATTAGGGGACAGAGGACAGCAGAAAAAAATTATT i calJac3.chr1 C 0 C 0 s mm10.chr19 38014259 122 - 61431566 GAGGTAGACATGTGACTCCCTGGACC-AACTCCAATGTGTGTAAAATGA-AAACACAACATCCCTTCATGGTCCAAAGAATGGAAGACTTTTGCTAAGAAAGGGAGGGCAGCAG-AAAAATCTT-T i mm10.chr19 C 0 C 0 s canFam3.chr1 35252940 124 - 122678785 GAGGCAAACATCCAAATCCCAGGACAGAA-TGTGATGTTTGTAATAGGAGAAATACAAAGATCTTGTAAAGTCCAAAGAATAGGGGAGTTTTGTTTGGGAACGGAAGGTAATAG-AAAAGGTTTCT i canFam3.chr1 C 0 I 184 a score=515248.000000 s hg38.chr9_GL383541v1_alt 44770 150 + 171286 TAAAGAGGTAGACATT----------ACAA--TGCTGTAATGAATGGGTATG-ATTTAAAAGTTAGGTAAAGCAAG--GCAGATATAAGGCAAAGCCTCAAAAATAGGT--AACAAAATTTATTCCAATGAAAGAATGGTTCAATGTGATTG---CAGCAAACAACAGTG s panTro4.chr9 68610506 150 + 137840987 TAAAGAGGTAGACATT----------ACAA--TGCTGTAATGAATGGGTATG-ATTTAAAAGTTAGGTAAAGCAAG--GCAGATATAAGGCAAAGCCTCAAAAATAGGT--AACAAAATTTATTCCAATAAAAGAATGGTTCAATGTGATTG---CAGCAAACAACAGTG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64766166 150 + 135191526 TAAAGAGGTAGACATT----------ACAA--TGCTGTAATGAATGGGTATG-ATTTAAAAGTTAGGTAAAGCAAG--ACAGATATAAGGCAAAGCCTCAAAAATAGGT--AACAAAATTTATTCCAATAAAAGAATGGTTCAATGTGATTG---CAGCAAACAACAGTG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57804372 150 - 122973662 TAAAGAAGTAGACATT----------ACAA--TGCTGTAATGAATGGGTACG-ATTTAAAAGTTAGGTAAAGCAAG--ACAGATATAAGGCAAAGCCTCAAAAATAGGT--AACAAAATTTATTCCAATAAAAGAATGGTTCAGTGTGATTG---CAGCAAACAACAGTG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79734176 146 + 112192347 TAAAGAGGTAGATATT----------ACAA--TGCTGTAATGAATGGGTAAG-ATTTAAA----AGGTAAAGCAAG--ACAGATACAAGGCAAAGCCTCAAAAATAGGT--AACAAAATTTATTCCAATAAAAGAGTGGCTCAATGTGATTG---CAGCAAACAACAGTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80814987 146 + 112612857 TAAAGAGGTAGATATT----------ACAA--TGCTGTAATGAATGGGTAAG-ATTTAAA----AGGTAAAGCAAG--ACAGATACAAGGCAAAGCCTCAAAAATAGGT--AACAAAATTTATTCCAATAAAAGAGTGGCTCAATGTGATTG---CAGCAAACAACAGTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76864075 146 + 107442819 TAAAGAGGTAGATATT----------ACAA--TGCTGTAATGAATGGGTAAG-ATTTAAA----AGGTAAAGCAAG--ATAGATACAAGGCAAAGCCTCAAAAATAGGT--AACAAAATTTATTCCAATAAAAGAGTGGTTCAATGTGATTG---CAGCAAACAACAGTG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81127644 150 + 108555830 TAAAGAGGTAGATATT----------ACGA--TGCTGTAATGAATGGGTAAG-ATTTAAAAGTTAGGTAAAGCAAG--ACAGATATAAGGCAAAGCCTCAAAAATAGGT--AACAAAATTTATTCCAATAAAAGAGTGGTTCAATGTGATTG---CAGCAAGCAACAGTG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111355635 148 - 210400635 TAAAGAGGTAGAAGTT----------GCAA--TGCTGTAATGAATGGGTAAG-ATTTGAG--TTAGGTAAAGCAAG--ACAGATATAATGCAAAGACTCAAAAATAGGT--AACAAAATTTATTCCAGTAAAAGAATGGTTCAATGTGATCA---CAGCAAACAACAATG i calJac3.chr1 C 0 C 0 s mm10.chr19 38014381 152 - 61431566 TAAAGAAACAGAAATTGGCATTATACACAA--TTGTGC----ACAGGGTAGG-ACTCTGAGTTTTGAGTAAGCAAG--CCAG-CATAAGGCAGAGGCACAAAGAAGGGT---ACAAAACTCATTTCTG-----GAGTGGCTCCCTGTGACTGGAACAACGACTAACAATG i mm10.chr19 C 0 I 1128 s canFam3.chr1 35253248 155 - 122678785 TAAAGAAGCAGAATTT----------ACAATTTGCTGCAGTCGATAGGTAGGAATCTGAAAGTGGGGTAAGACAAGCCCCAGGTGCAAGGCAAAGGTGCAAAGGTAGGTTAGGTCTAGTTTGTTCCTGTAA--GAGTGGTCCTGTGTTATTG---GAGCAAAGGTCAACT i canFam3.chr1 I 184 C 0 a score=17190.000000 s hg38.chr9_GL383541v1_alt 44920 4 + 171286 TGGA s panTro4.chr9 68610656 4 + 137840987 TGGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64766316 4 + 135191526 TGGA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57804522 4 - 122973662 TGGA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79734322 4 + 112192347 TGGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80815133 4 + 112612857 TGGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76864221 4 + 107442819 TGGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81127794 4 + 108555830 TGGA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111355783 4 - 210400635 TGGA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35253403 4 - 122678785 TGGA i canFam3.chr1 C 0 C 0 e mm10.chr19 38014533 1128 - 61431566 I a score=14290.000000 s hg38.chr9_GL383541v1_alt 44924 3 + 171286 AGA s panTro4.chr9 68610660 3 + 137840987 AGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64766320 3 + 135191526 AGA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57804526 3 - 122973662 AGA i nomLeu3.chr1a C 0 I 514 s rheMac3.chr15 79734326 3 + 112192347 AGA i rheMac3.chr15 C 0 I 529 s macFas5.chr15 80815137 3 + 112612857 AGA i macFas5.chr15 C 0 I 529 s papAnu2.chr15 76864225 3 + 107442819 AGA i papAnu2.chr15 C 0 I 529 s chlSab2.chr12 81127798 3 + 108555830 AGA i chlSab2.chr12 C 0 I 511 s calJac3.chr1 111355787 3 - 210400635 AGA i calJac3.chr1 C 0 I 499 s mm10.chr19 38015661 3 - 61431566 AGG i mm10.chr19 I 1128 C 0 s canFam3.chr1 35253407 3 - 122678785 AGA i canFam3.chr1 C 0 C 0 a score=10010.000000 s hg38.chr9_GL383541v1_alt 44927 2 + 171286 AT s panTro4.chr9 68610663 2 + 137840987 AT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64766323 2 + 135191526 AT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57805043 2 - 122973662 AT i nomLeu3.chr1a I 514 C 0 s rheMac3.chr15 79734858 2 + 112192347 AT i rheMac3.chr15 I 529 C 0 s macFas5.chr15 80815669 2 + 112612857 AT i macFas5.chr15 I 529 C 0 s papAnu2.chr15 76864757 2 + 107442819 AT i papAnu2.chr15 I 529 C 0 s chlSab2.chr12 81128312 2 + 108555830 AT i chlSab2.chr12 I 511 C 0 s calJac3.chr1 111356289 2 - 210400635 AT i calJac3.chr1 I 499 C 0 s mm10.chr19 38015664 2 - 61431566 AT i mm10.chr19 C 0 C 0 s canFam3.chr1 35253410 2 - 122678785 AT i canFam3.chr1 C 0 I 1452 a score=19260.000000 s hg38.chr9_GL383541v1_alt 44929 5 + 171286 TTGCT s panTro4.chr9 68610665 5 + 137840987 TTGCT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64766325 5 + 135191526 TTGCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57805045 5 - 122973662 TTGCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79734860 5 + 112192347 TTGCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80815671 5 + 112612857 TTGCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76864759 5 + 107442819 TTGCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81128314 5 + 108555830 TTGCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111356291 5 - 210400635 TTGCT i calJac3.chr1 C 0 C 0 s mm10.chr19 38015666 5 - 61431566 TTCCT i mm10.chr19 C 0 C 0 e canFam3.chr1 35253412 1452 - 122678785 I a score=657509.000000 s hg38.chr9_GL383541v1_alt 44934 202 + 171286 ATTGCTTGGAAGGGGCAGAACCCG--GTAGAAGGATTGTGTGTG-CACAAGAGAGGAATAAGCTGAGG-AAACCCGAGATTCAGCCTTGGCTTATGAATCCCCTGGACAGTACCTTCTCTTTCTGTCACAGATTTTTCATCTCATGTGTGCCATTTCAGTTGCATG------------------------------CACACCAAAAGAGTTATTATTCTTGTTGTTCCTG-T---------TTTGT s panTro4.chr9 68610670 201 + 137840987 ATTGCTTGGAAGGGGCAGAACCCA--GTAAAAGGATTGTGTGTG-CACAAGAGAGGAATAAGCTGAGG-AAACCCGAGATTCAGCCTTGGCTTATGAATCCCCTGGATAGTACCTTCTCTTTCTGTCACAGATTTTTCATCTCATGTGTGCCATT-CAGTTGCATG------------------------------CACACCAAAAGAGTTATTATTCTTGTTGTTCCTG-T---------TTTGT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64766330 203 + 135191526 ATTGCTTGGAAGGGGCAGAACCCA--GTAGAAGGATTGTGTGTG-CACAAGAGAGGAATAAGCTGAGG-AAACCCGAGATTCAGCCTTGGCTTATGAATCCCCTGGACAGTAGCTTCTCTTTCTGTCACAGATTTTTCATCTCATGTGTGGCATTTCAGTTGCATG------------------------------CACACCAAAAGAGTTATTATTCTTGTTGTTCCTGTT---------TTTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57805050 201 - 122973662 ATTGCTTGGAAGGGGCAGAACCCA--GTAGAAGGATTGTGTGTG-CACAAGAGAGGAATAAGCTGAGG-AAACCCGAGATTCA-TCTTGGCTTATGAATCCCCTGGATAGTACCTTCTCTTTCTGTCACAGATTTTTCATCTCATGTGTGGCAATTCAGTTCCATG------------------------------TACACCAAAAGAGTTATTATTCTTGTAGTTCCTG-T---------TTTGT i nomLeu3.chr1a C 0 I 147 s rheMac3.chr15 79734865 201 + 112192347 ATTGCTTGGAAGGAGCAGAACCCA--GTAGAAGGATTGTGTGTG-CACAAGAGAGGAATAATCTGAGG-AAACCCGAGATTCAGCCTTGGCTT-TGAATCCCCTGGACAGTACCTTCTCTTTCTGTCACAGATTTTTCATCTCATGTGTGGCATTTCATTTCCATG------------------------------CACACCAAAAGAGTTATTATTCTTGTTGTTCCTG-T---------TTTGC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80815676 201 + 112612857 ATTGCTTGGAAGGAGCAGAACCCA--GTAGAAGGATTGTGTGTG-CACAAGAGAGGAATAATCTGAGG-AAACCCGAGATTCAGCCTTGGCTT-TGAATCCCCTGGACAGTACCTTCTCTTTCTGTCACAGATTTTTCATCTCATGTGTGGCATTTCATTTCCATG------------------------------CACACCAAAAGAGTTATTATTCTTGTTGTTCCTG-T---------TTTGC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76864764 202 + 107442819 ATTGCTTGGAAGGAGCAGAACCCA--GTAGAAGGATTGTGTGTG-CACAAGAGAGGAATAATCTGAGG-AAACCCGAGATTCAGCCTTGGCTTGTGAATCCCCTGGACAGTACCTTCTCTTTCTGTCACAGATTTTTCATCTCATGTGTGGCATTTCATTTCCATG------------------------------CACACCAAAAGAgttattattcttgtttttcctg-t---------tttgc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81128319 190 + 108555830 ATTGCTTGGAAGGAGCAGAACCCA--GTAGAAGGATTGTGTGTG-CACAAGAGAGGAATAATCTGAGG-AAACCCGAGATTCAGCCTTGGCTTATGAATCCCCTGGACAGTACCTTCTCTTTCTGTCGCAGATTTTTCATCTCATGTGTGGCATTTCATTTCCATG------------------------------CACACTAAAATAGTTATTATCCTTCTTG---------------------- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111356296 200 - 210400635 ATTGCTTGGAAGGGGCAGAACCCA--GCAGAAGGATTGTGCGTG-CACAAGAGAGGAATAAGCTGAGG-AATCCCTAGATTCGGCCTTGCCTTACAAATCCCCCGGACAGTACCTTCTGTTCCTGTCACAGATTTGTCATCTC--GTGAGGCGTTTCAGTTTTATG------------------------------TACACCAGAAGAGTTCTTATTATTGTTGTTCCTA-T---------TTTGT i calJac3.chr1 C 0 C 0 s mm10.chr19 38015671 198 - 61431566 ATTGCCTG--AGGGGCAGGACCTG--CAAGAAAAGCTGTAAATGAAACAAGAGGAAGCTGACCTGAA--------------------------------CCCATGAGTAATAGCTCCAGATTATCTCCCGGATATTCCAGCTCACATGTGGCATTCCATTTCCATGGCCTCTTTCCCATGCCATTTCATTCCCAATCATACCAGGAGA--TTTTATTCTTCTGGTTCCTG-T---------TTTGT i mm10.chr19 C 0 C 0 s canFam3.chr1 35254864 205 - 122678785 ATTGTTTGGAAGGGACAAGGCACATGATAGAAAGATTGTGTGTG-AGAAAGAGAG--ACAAGCTGAAGTAAACCTTAGGTCTAGCCTTTGGTT-TTTGTCTCCTGGATATGGCTTTCTCTTTTT-TCACAGATGTTCCATCTCCTGCCTGGCAGTTCATTTCCACA-----------------------------------CTGAAGAACCTTTATTCTTGTTGTTCCTC-TGTGCATGTGTGTGT i canFam3.chr1 I 1452 C 0 a score=6552.000000 s hg38.chr9_GL383541v1_alt 45136 2 + 171286 TT s panTro4.chr9 68610871 2 + 137840987 TT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64766533 2 + 135191526 TT i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79735066 2 + 112192347 TT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80815877 2 + 112612857 TT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76864966 2 + 107442819 tt i papAnu2.chr15 C 0 C 0 s calJac3.chr1 111356496 2 - 210400635 TT i calJac3.chr1 C 0 I 4 s mm10.chr19 38015869 2 - 61431566 TT i mm10.chr19 C 0 C 0 s canFam3.chr1 35255069 2 - 122678785 TT i canFam3.chr1 C 0 C 0 e chlSab2.chr12 81128509 0 + 108555830 C e nomLeu3.chr1a 57805251 147 - 122973662 I a score=938539.000000 s hg38.chr9_GL383541v1_alt 45138 269 + 171286 -------TTCTGTTAACATAGTTATTACTTTCCTGGTC---------AAGTGTAAAGAGCCACATGATTATTAATAGTAATTATATTTATTATAGCCACAGGTA-TTTTAAGTGTTTCTCAAATTATAGCACAACTTTCTTATGCAGCTG-TTATCTCCACCTGCTTTGTTGGCTAACGTAATGTTAACATA---AGCCTCAGGAGCCTCAAAGTTTTTGTGTATCAAACAGCCAAGGCTTGTCATTGTAAACACTTTATAGACGATAGGGTCAAAAG----------------------CAAATTTTTAAA s panTro4.chr9 68610873 269 + 137840987 -------TTCTGTTAACATAGTTATTACTTTCCTGGTC---------AAGTGTAAAGAGCCACATGattattaatagtaattatatttattataGCCACAGGTA-TTTTAAGTGTTTCTCGAATTATAGCACAACTTTCTTATGCAGCTG-TTATCTCCACCTGCTTTGTTGGCTAACGTAATGTTAACATA---AGCCTCAGGAGCCTCAAAGTTTTTGTGTATCAAATAGCCAAGGCTTGTCATTGTAAACACTTTATAGATGATAGGGTCAAAAG----------------------CAAATTTTTGAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64766535 269 + 135191526 -------TTCTGTTAACATAGTTATTACTTTCCTGGTC---------AAGTGTAAAGAGCCACATGattattaatagtaattatatttattataaCCACAGGTA-TTTTAAGTGTTTCTTGAATTATAGTACAACTTTCTCATGCAGCTG-TTATCTCCACCTGCTTTCTTGGCTAACATAATGTTAACATA---AGCCTCAGGAGCCTCAAAGTTTTTGTGTATCAAATAGCCAAGGCTTGTCATTGTAAACACTTTATAGATGATAGGGTCAAAAG----------------------CAAATTTTTGAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57805398 267 - 122973662 -------TTCTGTTACCATAGTTATTCCTTTCCTGGTC----------AGTGTAAAGAGCCACATGA-TATTAATAGTAATTATATTTATTATAGCCACAGGTA-TTTTAAGTGTTTCTCGAATTATAGCACAACTTTCTTATGCAGCGG-TTATCTCCACCTGCTTTCTTGGCTAACGTAATGTTAACATA---AGCCTCAGGAGCCTCAAAGTTTTTGTCCATCAAATAGCCAAGGCTTGTCATTGTAAACACTTTATAGATGATAGGGTCAAAAG----------------------CAAATTTTTGAG i nomLeu3.chr1a I 147 C 0 s rheMac3.chr15 79735068 270 + 112192347 -------TTCTGTTACCGTAGTTATTACTTTCCTGGTC---------AAGTGTAAGGAGCCACATGATTATTAATAGTAATTATATTTATTACAGCCATAGGTA-TTTTAAGTGTTTCTTGAATTATAGCACAACTTTCTTATGCAGCTGTTTATCTCCACCTGCTCTCTTGGCTAACGTAATGTTAACATA---AGCCTCAGGAGCCTCAAAGTTTTTGTGGATCCAATAGCCAAGGCTTGTCGTTGTAAACACTTTATAGATGATAGGGTCAAAAG----------------------CACATTTTTTAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80815879 270 + 112612857 -------TTCTGTTACCGTAGTTATTACTTTCCTGGTC---------AAGTGTAAGGAGCCACATGATTATTAATAGTAATTATATTTATTACAGCCATAGGTA-TTTTAAGTGTTTCTTGAATTATAGCACAACTTTCTTATGCAGCTGTTTATCTCCACCTGCTCTCTTGGCTAACGTAATGTTAACATA---AGCCTCAGGAGCCTCAAAGTTTTTGTGGATCCAATAGCCAAGGCTTGTCGTTGTAAACACTTTATAGATGATAGGGTCAAAAG----------------------CACATTTTTGAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76864968 270 + 107442819 -------ttctgttacTGTAGTTATTACTTTCCTGGTC---------AAGTGTAAGGAGCCACATGATTATTAatagtaattatatttattacagcCATAGGTA-TTTTAAGTGTTTCTTGAATTATAGCACAGCTTTCTTATGCAGCTGTTTATCTCCACCTGCTCTCTTGGCTAACGTAATGTTAACATA---AGCCTCAGGAGCCTCAAAGTTTTTGTGGATCCAATAGCCAAGTCTTGTCATTGTAAACACTTTATAGATGATAGGGTCAAAAG----------------------CACATTTTTGAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81128509 269 + 108555830 -------TTCTGTTACCGTAGTTATTACTTTCCTGGTC---------AAGCGTAAGGTGCCACATGATTATTAATAGTAATTATATTTATTACAGCCATAGGTA-TTTTAAGGGTTTCTCGAATTATAGCACAACTTTCTTATGCAGCTA-TTATCTCCACCTGCTCTCTTGGCTAACGTAATGTTAACATA---AGCCTCAGGAGCCTCAAAGTTTTTGTGGATCCAATAGCCAAGGCTTGTCATTGTAAACACTTTATAGATGATAGGGTCAAAAG----------------------CACATTTTTGAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111356502 269 - 210400635 -------TTCTGTTACTCTCGTTGTAACCTGCCTGGTC---------AAGTGTGAAGAGCCACATGATTATTAATAGTCATTATATTTATGATAGCCACAGGTA-TTTTAAGTGTTTCCTGAATTATAGCATAACTTTCTTGTGCAGCTG-TTGTCTCTGCCTGCTTTCTTGGCTAACAAAATATTAATATA---ACCCTCAGGAGCCTCAAAGTTTTTGTGGATCAAATAGCAAAGGCTTGTCATTATAAATACTTTACAGATGATAGGGTCAATAG----------------------CAAATTTTTGAA i calJac3.chr1 I 4 C 0 s mm10.chr19 38015871 243 - 61431566 -------------ACTTGTAGTTATTGTTTTATGGGTTTATTAAAAAAAAGTTAAAGAGACAAA----TATTAATACTGGATACATTTATGACAACTCTAGGTGTTTTTTACTGTTTTTCCAATTTTAGCACAACCT----ATATGGCTC-CTGCCCCCACATGCCTTCTCTGATA--------------------------------------TCCTTGT---------AGCTGGGATTTATCATTATAAACATTTCATAGACAATAGTGTCAGCAGTGAAATGTGAGAGTGTACCTGACAAGTTTTTAAA i mm10.chr19 C 0 I 189 s canFam3.chr1 35255071 275 - 122678785 TTCTTCCCCCTGTTACTGCCGTTGTGATTTTATTGGTC---------AAGT-TAAAGACCCATATAATTACTGGAAGTAATTATATTTATTATGCCCACAGGCA-TTTTCAATGTTTTTCCAATCACAGCACAACTTTCTTGTGCAGCTA-TTACCCTGGCCTGTTTTCTTGGCTCATGTAG-GCTAAGATCCTTAGCCT-AGGATCCTTAATACTCTTGTGGATCAAATAGCCAGGGCTTGTCCTTGTAAACATTTCATAGATGACGAGGTCAGAAG----------------------CAAATTGTGAA- i canFam3.chr1 C 0 C 0 a score=213716.000000 s hg38.chr9_GL383541v1_alt 45407 63 + 171286 TATGCATAGTCTTTGGATAATTTATTTAGAATAGGATACCTGATAAGTTTTAACATTGAAAGC s panTro4.chr9 68611142 63 + 137840987 TATGGACAGTCTTTGGATAATTTATTTAGAATGGGATACCTGATAAGTTTTAACATTGAAAGC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64766804 63 + 135191526 TATGAATAGTCTTTGGATAATTTATTTAGAATAGGATACCCAATAAGTTTTAACATTGAAAGC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57805665 63 - 122973662 TATGAATAGTCTTTGGATAATTCACTTAAAATAGGATACCTGATAAGTTTTAACACTGAAAGC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79735338 63 + 112192347 TATGCATAGTCTTTGGATAATTTATTTAGAGTAGAATACCTGATAAGTTTTAACATTGAAAGT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80816149 63 + 112612857 TATGCATAGTCTTTGGATAATTTATTTAGAGTAGAATACCTGATAAGTTTTAACATTGAAAGT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76865238 63 + 107442819 TATGCATAGTCTTTGGATAATTTATTTAGAGTAGAATACCTGGTAAGTTTTAACATTGAAAGT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81128778 63 + 108555830 TATGCATAGTCTTTGGATAATTTATTTAGAGTAGAATACCTGATAACTTTTAACATTGAAAGT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111356771 63 - 210400635 CATGCATAGTGTTTGGATAATTTATTTAGAATAGGATACCTGATAAGATTTACCATTGAAAGC i calJac3.chr1 C 0 C 0 s canFam3.chr1 35255346 62 - 122678785 TTTACACAGCCTCT-GATAATTCGTTTAGAATAGGACGCCTGACAAGTTTTAAAATTGAAAGC i canFam3.chr1 C 0 C 0 e mm10.chr19 38016114 189 - 61431566 I a score=1401556.000000 s hg38.chr9_GL383541v1_alt 45470 345 + 171286 TACTTTGTTCCTTAATGGCTAGTAGAGGCTAAAAATA-GTCCAAAGT-T-TGTTTCAAAATAGAAAAGGGAAAAGG-TTCCAAC----------TCCT-GAGAT-------------GGAGAACTTTTTGAAGATGATTGTCAATATTTAGCATTGGTCCCTATCCACACTTTAGCACCTGG-GAGGGAAT----GGCTTTGCTTTCTGGAATTTCTTGCTCCTGAAGAGTTACAGGAAGAGTTGGAGAAGAATTTCAGCCAGAAACATTTGTTCTTTTGGTTGTTCTCGCCTTGTTTCCTAGGACATCGTTTTCATGTCAGCATGATCTTGGCTGAAGAAGAATTTATTCCTCTTGACATATTCCTCAACTAAGAAT s panTro4.chr9 68611205 345 + 137840987 TACTTTGTTCCTTAATGGCTAGTAGAGGCTAAAAATA-GTCCAAAGT-T-TGTTTCAAAATAGAAAAGGGAAAAGG-TTCCAAC----------TCCT-GAGAT-------------GGAGAACTTTTTGAAGATGATTGTCAATATTTAGCATTGGTCCCTATCCACACTTTAGCCCCTGG-GAGGGAAT----GGCTTTGCTTTCTGGAATTTCTTGCTCCTGAAGAGTTACAGGAAGAGTTGGAGAAGAATTTCAGCCAGAAACATTTGTTCTTTTGGTTGTTCTCGCCTTGTTTCCTAGGACATCGTTTTCATGTCAGCATGATCTTGGCTGAAGAAGAATTTATTCCTCTTGACATATTCCTCAACTAAGAAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64766867 345 + 135191526 TACTTTGTCCCTTAATGGCTAGTAGAGGCTAAAAATA-GTCCAAAGT-T-TGTTTCAAAATAGAAAAGGGAAAAGA-TTCCAAC----------TCCT-GCGAT-------------GGAGAACTTTTTGAAGATGATTGTCAATATTTAGCATTGGTCCCTATCCACACTTTAGCACCTGG-GAGGGAAT----GGCTTTGCTTTCTGGAATTTCTTGCTCCTGAAGAGTTACAGGAAGAGTTGAAGAAGAATTTCAGCCAGAAACATTTGTTCTTTTGGTTGTTCTCGCCTTGTTTCCTAGGACATCGTTTTCATGTCAGCATGATCTTGGCTGAAGAAGAATTTATTCCTCTTGACATATTCCTCAACTAAGAAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57805728 345 - 122973662 TACTTTGTTCCTTAATGGCTAGTAGAGGCTAAAAATA-GTCCAAAGT-T-TGTTTCAAAATAGAAAAGGGAAAACG-TTCCAAC----------TCCT-GAGAT-------------GGAGAACTTTTTGAAGATGATTGTCAATATTTATCATTGGTCCCTATCCACACTTTAGCACCTGG-GAGGGAAT----GGCTTTGCTTTCTGGAATTTCTTCCTCCTGAAGAGTTACAGGAAGAGTTGGAGAAGAATTTCAGCCAGAAACATTTGTTCTTTTGGTTGTTCTCGCCTTGTTTCCTAGGACATCGTTTTCATGTCAGCATGATCTTGGCTGAAGAAGAATTTATTCCTCTTGACATATTCCTCAACTAAGAAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79735401 345 + 112192347 TACTTTGTTCCTTAATGGCTAGTAGAGGTGAAAAATA-GTCCAAAGT-T-TGTTTCAGAATAGAAAAGGGGAAAGG-TTCCAAC----------TCCT-GAGAT-------------GGAGAACTTTTTGAAGATGACTGTCAATGTTTAGCATTGGTCCCTATCCACACTGTAGCACCTGG-GAGGGAAT----GGCTTTGCTTTCTGGAATTTCTTGCTCCAGAAGAGTTACAGGAAGAGTTGAAGAAGAATTTCAGCCAGAAACGTTTGTTCTTTTGGTTGTTCTCGCCTTGTTTCCTAGGACATCGTTTTCATGTCAGCATGATCTTGGCTGAAGAAGAATTTATTCCTCTTGACATATTCCTCAACTAAGAAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80816212 345 + 112612857 TACTTTGTTCCTTAATGGCTAGTAGAGGTGAAAAATA-GTCCAAAGT-T-TGTTTCAGAATAGAAAAGGGGAAAGG-TTCCAAC----------TCCT-GAGAT-------------GGAGAACTTTTTGAAGATGACTGTCAATGTTTAGCATTGGTCCCTATCCACACTGTAGCACCTGG-GAGGGAAT----GGCTTTGCTTTCTGGAATTTCTTGCTCTGGAAGAGTTACAGGAAGAGTTGGAGAAGAATTTCAGCCAGAAACGTTTGTTCTTTTGGTTGTTCTCGCCTTGTTTCCTAGGACATCGTTTTCATGTCAGCATGATCTTGGCTGAAGAAGAATTTATTCCTCTTGACATATTCCTCAACTAAGAAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76865301 345 + 107442819 TACTTTGTTCCTTAATGGCTAGTAGAGGTGAAAAATA-GTCCAAAGT-T-TGTTTCAGAATAGAAAAGGGGAAAGG-TTCCAAC----------TCCT-GAGAT-------------GGAGAACTTTTTGAAGATGATTGCCAATATTTAGCATTGGTCCCTATCCACACTGTAGCACCTGG-GAGGGAAT----GGCTTTGCTTTCTGGAATTTCTTGCTCCGGAAGAGTTACAGGAAGAGTTGGAGAAGAATTTCAGCCAGAAACGTTTGTTCTTTTGGTTGTTCTCGCCTTGTTTCCTAGGACATCGTTTTCATgtcagcatgatcttggctgaagAAGAATTTATTCCTCTTGACATATTCCTCAACTAAGAAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81128841 345 + 108555830 TACTTTGTTCCTTAATGGCTAGTAGAGGTGAAAAATA-GTCCAAAGT-T-TGTTTCAGAATAGAAAAGGAGAAAGG-TTCCAAC----------TCCT-GAGAT-------------GGAGAACTTTTTGAAGATGATTGTCAATATTTAACATTGGTCCCTATCCACACTGTAGCACCTGG-GAGGGAAT----GGCTTTGCTTTCTGGAATTTCTTGCTCCTGAAGAGTTACAGGAAGATTTGGAGAAGAATTTCAGCCAGAAACGTTTGTTCTTTTGGTTGTTCTCGCCTTGTTTCCTAGGACATCGTTTTCATGTCAGCATGATCTTGGCTGAAGAAGAATTTATTCCTCTTGACATATTCCTCAACTAAGAAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111356834 349 - 210400635 TACTTTGTTCCTTAATGGTAGGTAGAGGCTAAAAATA-GTACAAA-T-T-TGTTTCAAAATAGAAAAGGGAAAAGG-TTCCAACTTCTTCTCCATCCT-GAGAT-------------GGAGAACTTTTTGAAGATGATTATCAATATTTAGCATTGGTCCCTATCCACACTTTAACACCTGG-GAGGGAAT----GGCT----TTTCTGGAACTTCTTGCTC-TGAAGAGTTACAGGAAGAGTTGGAGAAGAATGTCAGGCAGAAACATTTGTTCTTTTGGTTGTTTTTGCCTTGTTTCCTAGGACATCGTTTTCATGTCAGCATGATCTTGGCTGAAGAAGAATTTATTCCTCTTGACATTTTCCTCAACTAAGAAT i calJac3.chr1 C 0 C 0 s mm10.chr19 38016303 350 - 61431566 TCCTTTATTCCTTACTGGATAGCACAGGCTACAAACA-CTCCAAAGTAT-TATTTTAAGAAAGAAATTTGCAAATATTTTCAAC----------TTCT-AATGTCAAAAAAAAAAAAAAAAAACCCT---AAGGTGATCCTGA---------ATTGGCCTTGAACCACCCTTGTGTACCTGGAGAGACAGTTCG-TGCTCTGATTTCTGGAACCTCATGACTTTGAGGAGTTCCAGGAAAATTTGGA-AACAATTTCAACCAGAAACATTTGTTCTTTCAGTTGTGCTCCCTCTGGTTTCTAGGACACCACTTTCATGTCAGCCTGATCTTGGCT-AAGTAGAATGTATCCTTCTTGACATTTTCCTCCACTCAGAGG i mm10.chr19 I 189 C 0 s canFam3.chr1 35255408 353 - 122678785 TACTTTGCTCCTTGGTGGCTAACAGAGGCTAAAAATACATCCAAAGC-TGTGTTTCAAGCGAGAAAATTGTGATGGTTTCCAAC----------TCCCAGAGAT-------------GGAGAGTTTTTTAAAGATGATCATGAGTATTTAGCATTAACCCTGCTTCACACTGTGGCACCTGG-AAGGGAGCTAGCTGCTTTGCTTTCTGGAACTTCTTGTTCCTGAACGATTACAGGAAAAGTTGGAGGAGAATTTCAGCCAGAAACATTTGTTCTTTTGGTTGCTCTCCCCTTCTTTCCTAGGTCACCGTTTTCATGTCAGCATGATCTTGGCTGAAGGCAAATTTATCCCTCTTCACATTTTCCTCAACTAAGAAC i canFam3.chr1 C 0 I 197 a score=1368496.000000 s hg38.chr9_GL383541v1_alt 45815 359 + 171286 AACAGTCTCAATGTGT--CTTTTTGCAACCCTGCCTGAAACTGCTCCAAGAT--CCCACTCAGGGGGAGGT-GTTTGCAAAAGGGATGAGCTGAACTTTGGAAATAG-CGTAGGGTGAGTG-----------------AGG------------TTGTATTTTCACTGTGCATTGTTAGAAACCAACATACTATGTGGGAGATTCACTAATACCTAAATCCTTCCTTGGCCAGTAACTCTGTGATTTCTTGAGCTTCCTAAGAAAT----ATCCAGGCACAAAATGGGCATGGGCCTGACTGCTCCTTGGGAGGAGAAAAAGCAAGGTCTATCTTTATCCTATGGAAGACTGGTCCTGGACC-TT-TTCACTCCAGGCATGTGGAAAGAGAAAGAGAAAAA s panTro4.chr9 68611550 359 + 137840987 AACAGTCTCAATGTGT--CTTTTTGCAACCCTGCCTGAGACTACTCCAAGAT--CCCACTCAGGGGGAGGT-GTTTGCAAAAGGGATGAGCTGAACTTTGGAAATAG-TGTAGGGTGAGTG-----------------AGG------------TTGTATTTTCACTGTGCATTGTTAGAAACCAACATACTATGTGGGAGATTCACTAATACCTAAATCCTTCCTCGGCCAGTAACTCTGTGATTTCTTGAGCTTCCTAAGAAAT----ATCCAGGCACAAAATGGGCATGGGCCTGACTGCTCCTTGGGAGGAGAAAAAGCAAGGTCTATCTTTATCCTATGGAAGACTGGTCCTGGACC-TT-TTCACTCCAGGCATGTGGAAAGAGAAAGAGAAAAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64767212 359 + 135191526 AACAGTCTCAATGTGT--CTTTTTGCAACCCTGCCTGAGACTGCTCCAAGAT--CCCACTCAGGGGGAGGT-GTTTGCAAAAGGGATGAGCTGAACTTTGGAAATAG-TGTAGGGTGAGTG-----------------AGG------------TTGTATTTTCATTGTGCATTGTTAGAAACCAACATACTATGTGGGAAATTCACTAATACCTAAATCCTTCCTTGGCCAGTAACTCCGTGATTTCTTGAGCTTCCTAAGAAAT----ATTCAGGCACAAAATGGGCATGGGCCTGGCTGCTCCTTGGGAGGAGAAAAAGCAAGGTCTATCTTTATCCTATGGAAGAGTGGTCCTGGACC-TT-TTCACTCCAGGCATGTGGAAAGAGAAAGAGAAAAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57806073 359 - 122973662 AACAGTCTCAATGTGT--CTTTTTGCAACCCTGCCTGAGACTGCTCCAAGAT--CCCTCTCAGGGGGAGGT-GTTTGCAAAAGGGATGAGCTGAACTTTGGAAATAG-TGTAGGGTGAGTG-----------------AGG------------TTGTATTTTCATTGTGCATTGTTAGAAACCAACATACTATGTGGGAGATTCACTAATACCTATATCCTTCCTTGGCCAGTAACTCCATGATTTCTTGAGCTTCCTAAGAAAT----ATCCACGCACAAAATGGGCATGGGCCTGGCTGCTCCTTGGGAGGAGAAAAAGCAAGGTCTGTCTTCATCCTATGGAAGAGTGGTCCTGGACC-TT-TTCACTCCAGGCATGTGGAAAGAGAAAGAGAAAAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79735746 359 + 112192347 AACAGTCTCAATGTGT--CTTTTTGCAACCCTGCCTGAGACTGCTCCAAGAT--CCCTCTCAGGGGGAGGT-GTTTGCAAAAGGGATGAGCTGAACTTTGGAAATAG-TGTAGGGTGAGTG-----------------AGG------------TTGTATTTTCATTGTGCATTGTTAGAAACCAACATACTATGTGGGAGATTCACTAATACCTAAATCCTTCCTTGGCCAGTAACTCCATGATTTCTTGAGCTTCCTAAGAAAT----ATCCACGCACAAGATGGACATAGGCCTGGCTGCTCCTTGGGAGGAGAAAAAGCAAGGTCTATCTTCATCCTATGGAAGAGTGGTCCTGGACC-TT-TTCACTCCAGGCGTGTGGAAAGACAAAGAGAAAAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80816557 359 + 112612857 AACAGTCTCAATGTGT--CTTTTTGCAACCCTGCCTGAGACTGCTCCAAGAT--CCCTCTCAGGGGGAGGT-GTTTGCAAAAGGGATGAGCTGAACTTTGGAAATAG-TGTAGGGTGAGTG-----------------AGG------------TTGTATTTTCATTGTGCATTGTTAGAAACCAACATACTATGTGGGAGATTCACTAATACCTAAATCCTTCCTTGGCCAGTAACTCCATGATTTCTTGAGCTTCCTAAGAAAT----ATCCACGCACAAGATGGACATAGGCCTGACTGCTCCTTGGGAGGAGAAAAAGCAAGGTCTATCTTCATCCTATGGAAGAGTGGTCCTGGACC-TT-TTCACTCCAGGCGTGTGGAAAGACAAAGAGAAAAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76865646 359 + 107442819 AACAGTCTCAATGTGT--CTTTTTGCAACCCTGCCTGAGACTGCTCCAAGAT--CCCTCTCAGGGGGAGGT-GTTTGCAAAAGGGATGAGCTGAACTTTGGAAATAG-TGTAGGGTGAGTG-----------------AGG------------TTGTATTTTCATTGTACATTGTTAGAAACCAACATCCTATGTGGGAGATTCACTAATACCTAAATCCTTCCTTGGCCAGTAACTCCATGATTTCTTGAGCTTCCTAAGAAAT----ATCCATGCACAAGATGGACATGGGCCTGGCTGCTCCTTGGGAGGAGAAAAAGCAAGGTCTATCTTCATCCTATGGAAGAGTGGTCCTGGACC-TT-TTCACTCCAGGCgtgtggaaagagaaagagaaaac i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81129186 359 + 108555830 AACAGTCTCAATGTGT--CTTTTTGCAACCCTGCCTGAGACTGCTCCAAGAT--CCCTCTCAGGGGGAGGT-GTTTGCAAAAGGGATGAGCTGAACTTTTGAAATAG-TATAGGGTGAGTG-----------------AGG------------TTGTATTTTCATTGTACATTGTTAGAAACCAACATACTATGTGGGAGATTCACTAATACCTAAATCCTTCCTTGGCTAGTAACTCCATGATTTCTTGAGCTTCCTAAGAAAT----ATCCATGCATAAAATGGACATGGGCCTGGCTGCTCCTTGGGAGGAGAAAAAGCAAGGTCTATCCTTATCCTATGGAAGAGTGGTCCTGGACC-TT-TTCACTCCAGGCTTGTGGAAAGAGAAAGAGAAAAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111357183 350 - 210400635 AACAGTCTCAATGTGT--CTCTTTGCAACCCTGCCTGAGACTGCTCCAAGAT--CCCTCTCAGAGGGAGGT-GTTTGCAAAAGGGATGAGCTGAACTTTGGAAATAG-TGTGGGGTGAGTG-----------------AGG------------TTGTATTTTCACTATGCATTGTTAGAAACCAACATACCATGCAGGAGATTCACTAGTACCCAAATCCTTCCTTGGCCAGTAACT--GTGATTTCTGGAGCTTCCTAAGAAAT----AGCCACACACAAAATGGGCATGGGCCTGGCTGCTCCTTGGGAGGAGACAAAG------CTATCTTCATCCTATGGAAGAGTGG-CCTAGACC-TT-TTCACTCCAGGCATGTGGAAAGAGAAAAAGAAAAG i calJac3.chr1 C 0 C 0 s mm10.chr19 38016653 379 - 61431566 AACTGCCTTAAT-TGC--CTTTTTGCAACCCTGCCC--AGTTGCTCTGACCTCGCCATCTCTGGAAAAGAT-GATTGCAAAAGTCACGGGCAGCACTTTAGAAACTG-TGTGGAGTGGGTGCATGAGGACTGGTGGGCAGA------------GCACATTTTCATGATGCATTATTAAAACCCAGCACATCATGTGAGACATT-ACCAATAGCTAAATCCTTCCCTGGCCAGTGGCACCTGGATTTATTGCACTTACTAAGAAATAAAAATTCACACACAAAATGAGTATTGGACTGGCTGCTCTTTGGAAAGAGGGATAGCAAGGTTTAAGCTCATACTCTGGAGAACTGGAGCTAGACT-TTAACCACCTAGAGCAGATAATAAAAATAAaaacaaaa i mm10.chr19 C 0 I 913 s canFam3.chr1 35255958 359 - 122678785 GACATTCTTAATGTGTGCCTTTTGGAAGCCTTGTCC--AACTGCTCTGGTAC--CCCTCCCTGGGAGAGGTGGATTTCAAAAGA------------TTTGGAAAGAGTTGTAGGGTGTGTG-----------------AGGGCTGCTGGCAGCTTGTATTTTCATTATGCATCGCTAGAGAAAGGGATTCTATTTACGAGATCCACCAACACCCAAATCCTTTCCTGATGGGTGAGCCCTCAGTTTCTTGATGTTCCTGAGAAGT----GTACATGCCCAAAGTGGGCACGGGGAGGGCTGCTTCTGGGGATGAGAGAAACCAACATCTAGTCTCATCCTATGGAAGAGGGGGCCTGGACCATT-ACCGCTACAGGCACATCAAGAAAGGGAAGAAA--- i canFam3.chr1 I 197 C 0 a score=139626.000000 s hg38.chr9_GL383541v1_alt 46174 43 + 171286 GGCTAACTCCATGTGGCCTTATAGACTTTTTAGCTCCACTGCT s panTro4.chr9 68611909 42 + 137840987 GGCTAACTCCATATGGCCTTATAGACTTTTCA-CTCCACTGCT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64767571 43 + 135191526 GGCTAACTCCATATGGCCTCATAGACTTTTTAGCTCCACTGCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57806432 43 - 122973662 GGCTAACTCCATATGGCCTTATAGACTTTTTAGCTCCACTGCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79736105 43 + 112192347 GGCTAACCCCATATGGCCTTATAGACTTTTTAGCTCCACTGCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80816916 43 + 112612857 GGCTAACCCCATATGGCCTTATAGACTTTTTAGCTCCACTGCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76866005 43 + 107442819 ggCTAACCCCATATGGCCTTATAGACTTTTTAGCTCCACtgct i papAnu2.chr15 C 0 I 317 s chlSab2.chr12 81129545 43 + 108555830 GGCTAACCCCATATGGCCTTATAGACTTTTTAGCTCCACTGCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111357533 43 - 210400635 GGCTAACTTCAGATGGCCTTACATACTTTTTAGCTTCACTGCT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35256317 30 - 122678785 GACTAACCCCATATGGGCTTATGGACTGTG------------- i canFam3.chr1 C 0 C 0 e mm10.chr19 38017032 913 - 61431566 I a score=291256.000000 s hg38.chr9_GL383541v1_alt 46217 83 + 171286 AAGAAAAGAAAATTTGGCTCAGTCCTTATCAACAGTTTGAGGAATCACC-------CTCTTTTTTGGAGAGCGGAGTTTCCTTATCTTAA s panTro4.chr9 68611951 83 + 137840987 AAGAAAAGAAAATTTGGCTCAGTCCTTATCAACAGTTTGAGGAATCACC-------CTCTTTTTTGGAGAGCGGAGTTTCCTTATCTTAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64767614 83 + 135191526 AAGAAAAGAAAATTTGGCTCAGTCCTTATCAACAGTTTGAGGAATTGCC-------CTCTTTTTTGGAGAGCGGAGTTTCCTTATCTTAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57806475 83 - 122973662 AAGAAAAGAAAATGTGGCTCAGTCCTTATCAACAGTTTGAGGAATCACC-------CTCTTTTTTGGAGAATGGAGTTTCCTTATCTTAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79736148 83 + 112192347 AAGAAAAGAAAATGTGGCTCAGTTCTTATCAACAGTTTGAGGAATCACC-------CTCTTTTTTTGAGAGTGGAGTTTCCTTATCTTAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80816959 83 + 112612857 AAGAAAAGAAAATGTGGCTCAGTTCTTATCAACAGTTTGAGGAATCACC-------CTCTTTTTTTGAGAGTGGAGTTTCCTTATCTTAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76866365 83 + 107442819 aagaaaagaaaatgtggctcagTTCTTATCAACAGTTTGAGGAATCACC-------CTCtttttttGAGAGTGGAGTTTCCTTATCTTAA i papAnu2.chr15 I 317 C 0 s chlSab2.chr12 81129588 83 + 108555830 AAGAAAAGAAAATGTGGATCAGTTCTTATCAACAGTTTGGGGAATCACC-------CTCTTTTTTGGAGAGTGGAGTTTCCTTATCTTAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111357576 83 - 210400635 AAGAAAAGAAAATGTGGCTCAGTTCTTATCATCAGTTTGAGGAATGACC-------CTCTTTTTGGGAGAGTGGAGTTTCCTTATCTTAA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35256347 90 - 122678785 AAAAATAAAAGGTGTGGCCCAGTCATTATTATCCATTTGAGGAGTTGCCTACTTTTTTTTTTTTTTAAGAGTAGAGTTTTTCTCTCTTAA i canFam3.chr1 C 0 C 0 e mm10.chr19 38017032 913 - 61431566 I a score=2328210.000000 s hg38.chr9_GL383541v1_alt 46300 686 + 171286 TCTGAGCCTATTGTTTTAAAG--AAGTAAGGTAAAAGGTAGGGAGTTTGAGCCATCAGCTCT------------------------------ACAAAACCCCACTCACTGC-AATGTAGTATAAATATCTGTAGGTGTTGAGCAACATCCAGAGATTTGCATCATTGAATATGcatggc-------------------------------------taagcacatagtaggtgttcagtaacttcctactaattgaatgTTTGATTGATTAGAGAGACAAGAAGATCTTATAACAATATATTTCATCTATGATATAGTCTTGTGGCCTGCAAGTTGAGTACTGAATTATATTCAAACTTCAGTCTATTTTGGGTCCATCTTTATAGGTATTGATTTGTCATAGATCCTTGCCTACTGTACTTACTGTCTTATCCCATTTCTTATTTGCCTATTTTCCTACA-------TATATTCTATAGCAGAATAT---------ATTTTTC---------TGCCATTTCTACAGTCAATTTTTTCCTCCCTC--CTTTTTAAGGTAAATATTCTGAGATATAAATATATAACATCACT-AAAAAGTATTTCGATAAATAGTGTTGCTATTTGCAAGGCCTTCAA---AAAATCATGATCAATTAAATATTTGCATATCAATGGTCATTTATTTATACTAACCTTTTAATG----CCAAATATCCACCGTCCAGAACTCTATAAA---CAGGAAATGAAAAAGGACCTAGTGGAATTCCTCCACAGACAG---TTTTCAGAAGG--------------T s panTro4.chr9 68612034 686 + 137840987 TCTGAGCTTATTGTTTTAAAG--AAGTAAGGTAAAAGGTAGGGAGTTTGAGCCATCAGCTCT------------------------------ACAAAACCCCACTCACTGC-AGTGTAGTATAAATATCTGTAGGTGTTGAGCAACATCCAGAGATTTGCATCATTGAATATGcatggc-------------------------------------tgagcacatagtaggtgttcagtaacttcctactaattgaatgTTTGATTGATTAGAGAGACAAGAAGATCTTATAACAATATATTTCATCTATGATATAGTCTTGTGGCCTGCAAGTTGAGTACTGAATTATATTCAAACTTCAGTCCATTTTGGGTCCATCTTTATAGGTATTGATTTGTCATAGATCCTTGCCTACTGTACTTACTGTCTTATCCCATTTCTTATTTGCCTATTTTCCTATA-------TATATTCTATAGCAGAATAT---------ATTTTTC---------TGCCATTTCTACAGTCAATTTTTTCCTCCCTC--CTTTTTAAGGTAAATATTCTGAGATATAAATATATAACGTCACT-AAAAAGTATTTCGATAAATAGTGTTGCTATTTGCAAGGCCTTCAA---AAAATCATGATCAATTAAATATTTGCATATCAATGGTCATTTATTTATACTAACCTTTTAATG----CCAAATATCCACCGTCCAGAACTCTATAAA---CGGGAAATGAAAAAGGACCTAGTGGAATTCCTCCACAGACAG---TTTTCAGAAGG--------------T i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64767697 687 + 135191526 TCTGAGCTTATTGTTTTAAAG--AAGTAAGGTAAAAGGTAGGGAGTTTGAGCCATCAGCTCT------------------------------ACAAAACCCCACTCACTGC-AGTGTAGTATAAATATCTGTAGGTGTTGAGCAACATCCAGAGATTTGCATCATTGAATATGcatggc-------------------------------------tgagcacatagtaggtgttcagtaacttcctactaattgaatgTTTGATTGATTAGAGAGACAAGAAGATCTTACAACAAAATATTTCATCTATGATGTAGTCTTGTGGCTTGCGAGTTGAGTACTGAATTATATTCAAACTTCAGTCCATTTTGGGTCCATCTTTATAGGTATTGATTTGTCATAGATCCTTGCCTACTGTACTTACTGTCTTATCCCATTTCTTATTTGCCTATTTTCCTATA-------TATATTCTATAGCAGAATAT---------ATTTTTC---------TGCTATTTCTACAGTCAATTTTTTCCTCCATC--CTTTTTAAGGTTAAAATTCTGAGATTTAAATATATAATGTCACTAAAAAAGTATTTTGATGAATAGTGTTGTTATTTGCAAGGCCTTCAA---AAAATCATGATCAATTAAATATTTGCATATCAATGGTCATTTATTTATATTAACCTTTTAATG----CCAAATATCCACCGTCCAGAACTCTATAAA---CAGGAAATGAAAAAGGACCTAGTGGAATTCCTCCACAGACAG---TTTTCAGAAGT--------------T i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57806558 687 - 122973662 TCTGAGCTTATTGTTTGACAG--AAGTAAGATAAGAGGTAGGGAGTTTGAGCCATCAGATCT------------------------------ACAAAACCCCACTCACTGC-AGTGTAGTATAAATATCTGTAGGTGTTGAGCAACATCCAGAGATTTGCATCATTGAATATGcatggc-------------------------------------tgagcatatagtaggtgttcagtaacttcctactaattgaatgTTTGATTGATTAGAGAGACAAGAAGACCTTATAACAATATATTTCATCTATGATGTAGTCTTGTGGTCTGCGAGTTGAGTAGTGAATTATATTCAAACTTCAGTCCATTTTGGGTCCATCTTTATAGGTATTGATTTATCATAGATCCTTGCCTACTGTACTTACTGTCTTATCCCATTTCTTATTTGCCTATTTTCCTATA-------TATATTCTATAGCAGAATAT---------ATTTTTC---------TGCTATTTCTACAGTCAATTTTTTCCTCCCTC--CTTTTTAAGGTAAATATTCTGAGATTTAAATATATAATGTCACTAAAAATGTATTTCGATAAATAGTGTTGCTATTTGCAAGGCCTTCAA---AAATTCATGATCAATTAAATATTTGCATATCAATGGTCATTTATTTATACTAACCTTTTAATG----CCAAATATCCACTGTCCAGAACTCTATAAA---CAGGAAATGAAAAAGGACCTAGTGGAATTGCTCCACAGACAG---TTTTCAGAAGG--------------T i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79736231 680 + 112192347 TCTGAGCTTATTGTTTGAAAG--AAGTACAGTAAGAGGTAGGGAGTTTGAGCCATCAGCTTT-------------------------------------CCCATTCACTGC-AGTGTAGTATAAATACCTGTAGGTGTTGAGCAGCATCCAGGGATTTGCATCATTGAATGTGCATGAC-------------------------------------TGAGCACATAGTAGGTGTTCAGTTACTTCCTACTAATTGAGTGTTTGATTGATTACAGAGGCAAGAAGATCTTATAATAATATATTTCATCTATAATGTGGTCTTGTGGCCTGCGAGTTGAGTACTGAATTATATTCAAACTTTAGTCTATTTTGGGTCCATCTTTATGGGTATTGATTTGTCATAGATCCTTGCCTACTGTACTTACTCTCTTATCCCATTTCTTATTTGCCTATTTTCCTATA-------TATATTCTATAGTGGAATAT---------ATTTTTC---------TGCTATTTCTATACTCAATTTGTTTCTCCCTC--CTTTTTAAGGTAAATATTCTGAGACGTAAATATATAACGTCACTAAAAAGGTATTTTGATAAATAGTGTTGCTATTTGCAAGGCCTTCAA---AAAATCATGATCAATTAAATATTTGTATAGCAATGGTCATTTATTTATACTTACCTGTTAATG----CCAAATGTCCACTGTCCAGAACTCTATAAA---CAGCAAATGGAAAAGGACCTAGTGGAATTCCTCAACAGACAG---TTTTCAGAAGG--------------T i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80817042 680 + 112612857 TCTGAGCTTATTGTTTGAAAG--AAGTACAGTAAGAGGTAGGGAGTTTGAGCCATCAGCTCT-------------------------------------CCCATTCACTGC-AGTGTAGTATAAATACCTGTAGGTGTTGAGCAGCATCCAGGGATTTGCATCATTGAATGTGCATGAC-------------------------------------TGAGCACATAGTAGGTGTTCAGTTACTTCCTACTAATTGAGTGTTTGATTGATTACAGAGGCAAGAAGATCTTATAATAATATATTTCATCTATAATGTGGTCTTGTGGCCTGCGAGTTGAGTACTGAATTATATTCAAACTTTAGTCCATTTTGGGTCCATCTTTATGGGTATTGATTTGTCATAGATCCTTGCCTACTGTACTTACTCTCTTATCCCATTTCTTATTTGCCTATTTTCCTATA-------TATATTCTATAGTGGAATAT---------ATTTTTC---------TGCTATTTCTATACTCAATTTGTTTCTCCCTC--CTTTTTAAGGTAAATATTCTGAGATGTAAATATATAACGTCACTAAAAAGGTATTTTGATAAATAGTGTTGCTATTTGCAAGGCCTTCAA---AAAATCATGATCAATTAAATATTTGTATAGCACTGGTCATTTATTTATACTTACCTTTTAATG----CCAAATGTCCACTGTCCAGAACTCTATAAA---CAGCAAATGAAAAAGGACCTAGTGGAATTCCTCAACAGACAG---TTTTCAGAAAG--------------T i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76866448 680 + 107442819 TCTGAGCTTATTGTTTGAAAG--AAGTACAGTAAGAGATAGGGAGTTTGAGCCATCAGCTCT-------------------------------------CCCATTCACTGC-AGTGTAGTATAAATACCTGTAGGTGTTGAGCAGCATCCAGGGATTTGCATCATTGAATGTGCATGAc-------------------------------------tgagcacatagtaggtgttcagttaCTTCCTACTAATTGAGTGTTTGATTGATTAGAGAGGCAAGAAGATCttataacaatatatttcatCTATAATGTGGTCTTGTGGCCTGCGAGTTGAGTACTGAATTATATTCAAACTTCAGTCCATTTTGGGTCTATCTTTATGGGTATTGATTTGTCATAGATCCTTGCCTACTGTACTTACTGTCTTACCCCATTTCTTGTTTGCctattttcctata-------tatattctatagtagaatat---------atttttc---------tgctatttctatactcaatttttttctccctc--ctttttaaGGTAAATATTCTGAGATGTAAATATATAACGTCACTAAAAAGGTATTTTGATAAATAGTGTTGCTATTTGCAAGGCCTTCAA---AAAATCATGAtcaattaaatatttgtataGCAATGGTCATTTATTTATACTTACCTTTTAATG----CCAAATGTCCACTGTCCAGAACTCTATAAA---CAGCAAATGAAAAAGGACCTAGTGGAATTCCTCAACAGACAG---TTTTCAGAAAG--------------T i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81129671 679 + 108555830 TCTGAGCTTATTGTTTGAAAG--AAGTACAGTAAGAGGTAGGGAGTTTGAGCCATCAGCTCT-------------------------------------CCCATTCACTGC-AGTGTAGTATAAATACCTCTAGGTGTTGAGCAGCATCCAGAGATTTGCATCATTGAATGTGCATGAC-------------------------------------TGAGCACATAGTAGGTGTTCAGTGACTTCCTACTAATTGCATGTTTGATTGATTAGAGAGACAAGAAGATCTTATAACAATATATTTCATCTATGATGTGGTCTTGTGGCCTGCGAGTTGAGTACTGAATTATATTCAAACTTCAGTCCATTTTGGGTCTATCTTTATGGGTATTGATTTGTCATAGATCCTTGCCTACTGTACTTACTGTCTTATCCCATTTCTTATTTGCCTATTTTCCTATA-------TATATTCTATAGTAGAATAT---------ATTTTTC---------TGCTATTTCTATACTCAATTT-TTTCTCCCTC--CTTTTTAAGGTAAATATTCTGAGATTTAAATATATAACATCACTAAAAAGGTATTTTGATAAATAGTGTTGCCATTTGCAAGGCCTTCAA---AAAATCATGATCAATTAAATATTTGTATAGCAGTGGTCATTTATTTATACTTACCTTTTAATG----CCAAACGTCCACTGTCCAGAACTCTATAAA---CAGCAAATGAAAAAGGACCTAGTGGAATTTCTCAACAGACAG---TTTTCAGAAAG--------------T i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111357659 729 - 210400635 TCTGAGCTTATTCTTTGAAAGAAAAGTAAAGTAAGAGGTAGAAAGTTTGAGCCATCAGCTCT------------------------------ACAAAACCCCACTCATTGC-AGTGAAGTATAAATATCCATAGGTGTCGAGCAGCATCCAGAAATTTGCATCATTGAAAGTGCATGGCACAAAAAAAAAAAAATAAAGTGCGTGGCTGAGCATATAGAGCATGTAGTAGGTGCTTGGTAACTTCCTACTGATTAAATGTTTGATTGATTAGAGAGACAAGAAGATCTTATAACAATATATTTTATCTATAATGTGGTCTTGTGGCCTGCGAATTGAGTACTGAATTATATTCAAACTTCAGTCCATTTTTGGTCCATCTTTATAGGTATTGATTTGTTATAGATCCTTGCCTACTGTACTTAGTGTCTTATCCCATTTCTTATTTGCCTACTTTCCTATA-------TATGTTCTATAGCAGAATAT---------ATTTTTC---------TGCTATTTCTTTACTCAATTGTTTCCTCTCTC--C-ttttaaagtaaatattt-------taaatata-aaaatCACTAAAAA--TATTTCGATAAATAGTGTTGCTATTTGCAAGGCCTTCAA---AAAATCATGATCAATTAAATATTTGCATATAAATGGTCATTTATTTATACTAACATTTTAATG----CCAAATATCCACTACTCAACAGTCTGTAAA---CAGGAAATGACAAAGGATCTAGTGGAATTCCTGAACAGACAG---TTTTCAGAAGGAGATTACTGGTCTAC i calJac3.chr1 C 0 C 0 s mm10.chr19 38017945 693 - 61431566 tctgagcaggtc-ttTGGAAA--AGGAAGGGTAAGAGGCAGGTAG-TTGTGCCATCAGTTCT------------------------------TTTAAAAATAAAACATTGA-CATTTAGTATA---ACTTGCAAGTACTAAGAGACATCCAAAAACTTGAGTCCCTGGAAGTAGAAAAC-------------------------------------TGAGCAAATA--AACTGTTTAGTAACTTCTTATAGGTTGATTATTTGAATGATTTGAAAGAC---TAGGTCTTATAGTGACATAATTTTCTTATAATGTGATCT----GACTTTTGACTACATAGTAAACTATATTCAAGCATTAGAACATTTCTTGACCTTATT-----ATATGTATTTGCTATGGATCCTTGACTAATGT--------CCCTATTCCATTTGTTATTTTCCTATTTTAAAATACTGCATTTGGGTTTTGTTCTTGGATTTGTTTGTTTGATTTTTCATTTTTGCTTGATATTTCTATACCTATTTGTTTTCTCCCCCAACTTTCTTAAGTCAATATTGTGAGGGTTAAATATATAAGGTTTAT-TGAAATCGTTCCAATAAATA-TGTTGTTATGTGGCTGGCTTTAAAAACAAAAATGTGACCAGTCAAATAATTTAAAATTAATAGCCTCTTAATTGTAGTAGCCTTATAATGATACTAAAAAGTCCAAAATATAGAGTTCTATAGA---CAAAAATTTAAAA--GGCCAAAACTAATTCCTCAACCAATAGTGCTTTTCAGAAGG--------------T i mm10.chr19 I 913 C 0 s canFam3.chr1 35256437 588 - 122678785 TTTTAATTCACTCTTTATAAT--AAGTAAGGTAAGAG-TAGGGAGGTTGAGCCTTCAGCTCTaaaaaaaaaaaaacaaaaaacaaaaaaaacaaaaaaaacCTCACACAGCTAGTGTTGTATGAATAGCTCTACATGTTGAGCAATATCCAG-GACTTGAGTCACTGGAAGTACAGGGC-------------------------------------TGATCATGTCATAGATGCTCAGCAACTTCCTAGTGACTGAACGTCTGGCTGATTTGAGAAAC---AAGGTCTTATAACAACATATTTCACATACGATGTGGTCTTCTGGCCCCGAACTTGAGTAGTAAATTATATTCAAACTCTGGACTA--------------------------------------------------GTGCTT----------------------------------------------GACACTCT---------------------ATTGTCC---------------------------------CCTCCCTA--CTTTTCATGGTAAATATTCTGTGATTT-AATGTATCAGGTTGATGAAAAAATATTTCAATAAACAGAGTTGCTATTTGCAAGGCATTCAA---AAAATCATGACGAATTAAATATGTGAATATCAATGGTC----ATTCCTATTAGCCTTTTAACA----CCAAATATCTCGAATCCAGAACTCTGTAAACTGCAGGAAAT-AAAAAGAAACTAGTGAAATTCTTCAATAAACAGTACTTCTCAGAGGA--------------T i canFam3.chr1 C 0 I 210 a score=1017100.000000 s hg38.chr9_GL383541v1_alt 46986 277 + 171286 CAGAATGAGAGGCCTTT-TTGGTACTGGTTTTGATAGAGTTA---ACTTGGATTGTGTTG----------GGTTAATAGTG-TGTGCTTTACCATATGTTTTAAGTATCTATTCCTTGTAAGGAAGACCAACCGTGAGATGAAGGAAAACTCGAGAGTAGTACTTGATTTACGTAAGATGTCATAGTTTCCTTTCACAAATCAGAAAATTCCCTGATTGAAGAGTCTGTGCTACAGCCCAGGGGTTCCAGAATTCAGAATTTACTCTA-TTTTTTTT-CCATGCAAGTAGAAAT s panTro4.chr9 68612720 277 + 137840987 CAGAATGAGAGGCCTTT-TTGGTACTGGTTTTGATAGAGTTA---ACTTGGATTGTGTTG----------GGTTAATAGTG-TGTGCTTTACCATACGTTTTAAGTATCTATTCCTTGTAAGGAAGACCAACCGTGAGATGAAGGAAAACTCGAGAGTAGTACTAGATTTACGTAAGATGTCATAGTTTCCTTTCACAAATCAGAAAATTCCCTGATTGAAGAGTCTGTGCTACAGCCCAGGGGTTCCAGAATTCAGAAGTTACTCTA-TTTTTTTT-CCATGCAAGTAGAAAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64768384 277 + 135191526 CAGAATGAGAGGCCTTT-TTGGTGCTGGTTTTGATAGAGTTA---ACTTGGATTGTGTTG----------GGTTAATAGTG-TGTGCTTTACCATACGTTTTGAGTATCTATTCCTTGTAAGGAAGACCAACCGTGAGATGAAGGAAAACTCGAGAGTGGTACTTGATTTACGTAAGATGTCATAGTTTCCTTTCACAAACCAGAAAATTCCCTGATTGAAGAGTCTGTGCTACAGCCCAGGGGTTCCAGAATTCAGAAGTTACTCTA-TTTTTTTT-CCATGCAAGTAGAAAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57807245 278 - 122973662 CAGAATGAGAGGCCTTT-TTGGTGCTGGTTTTGATAGAGTTA---ACTTGGGTTGTGTTG----------GGTTAATAGTG-TGTGCTTTACCATACGTTTTGACTATCTATTCCTTGTAAGGAAGACCAACCGTGAGATGAAGGAAAACTTGAGAGCGGTACTTGATTTACGTAAGATGTCATAGTTTCCTTTCACAAACAAGAAAATTCCCTGATTGAAGAGTCTGTGCTACAGCCCAGGGGTTCCAGAATTCAGAAGTTACTCTATTTTTTTTT-CCATGCAAGTAGAAAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79736911 275 + 112192347 CAGAATGAGAGGCCTTT-TTGGTGCTGGTTTTGATAAAGTTA---ACTTGGGTTGTGTTG----------GGTTAATAATG-TGTGCTTTACCATACGTTTTGACTATCTATTCCTTGTAAGGAAGACCAACCATGAGATGAAGGAAAACTTGAGAGCGTTACTTGATTTACATAAGATGTCATAGTTTCCTTTCACAAACCAGAAAATT--CTGATTGAAGAGTCTGTCCTACAGCCCAGGGGTTCCAGAATTCAGAAGTTACTCTA-TTTTTTTT-CCATGCAAGTAGAAAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80817722 275 + 112612857 CAGAATGAGAGGCCTTT-TTGGTGCTGGTTTTGATAAAGTTA---ACTTGGGTTGTGTTG----------GGTTAATAATG-TGTGCTTTACCATACGTTTTGACTATCTATTCCTTGTAAGGAAGACCAACCATGAGATGAAGGAAAACTTGAGAGCGTTACTTGATTTACATAAGATGTCATAGTTTCCTTTCACAAACCAGAAAATT--CTGATTGAAGAGTCTGTCCTACAGCCCAGGGGTTCCAGAATTCAGAAGTTACTCTA-TTTTTTTT-CCATGCAAGTAGAAAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76867128 275 + 107442819 CAGAATGAGAGGCCTTT-TTGGTGCTGGTTTTGATAGAGTTA---ACTTGGGTTGTGTTG----------GGTTAATAATG-TGTGCTTTACCATACGTTTTGACTATCTATTCCTTGTAAGGAAGACCAACCATGAGATGAAGGAAAACTTGAGAGCGTTACTTGATTTACATAAGATGTCATAGTTTCCTTTCACAAACCAGAAAATT--CTGATTGAAGAGTCTGTCCTACAGCCCAGGGGTTCCAGAATTCAGAAGttactcta-tttttttt-ccatgcaAGTAGAAAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81130350 275 + 108555830 CAGAATGAGAGGCCTTT-TTGATGCTGGTTTTGATAGAGTTA---ACTTGGGTTGTGTCG----------GGTTAATAATG-TGTGCTTTACCATACGTTTTGACGATCTATTCCTTGTAAGGAAGACCAACCATGAGATGAAGGAAAACTTGAGAGCGTTACTTGATTTACATAAGATGTCATAGTTTCCTTTCACAAACCAGAAAATT--CTGATTGAAGAGTCTGTCCTACAGCCCAGGGGTTCCAGAATTCAGAAGTTACTCTA-TTTTTTTT-CCATGTAAGTAGAACT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111358388 276 - 210400635 CAGAATGAGAGGCCTTT-TTG-TGCTGGTTTTGATAGAGTTA---ACTTGGGTTGTTTTG----------GGTTAGTAGTG-TGTGCTTTACCATACGTTTTGACTATCTATTTCTTGTAAGGAAGACCAACTGTGAGATGATGGAAAACTTGAGAGCGGTACTATGTTTACTTAAGATGTCATCGTTTCCTTTCACGAACTAGAAAATTCCCTGATTGAAGAGTCC-TGCTACCGCCCAAGGCTTCCAGAATTCAGAATTTACTCTG-TTTTTTTTCCCATGCAATTAGAAAT i calJac3.chr1 C 0 C 0 s mm10.chr19 38018638 251 - 61431566 CCAGAGGAGAG-----------TACTGGTCTACCTGGAGGCACTTATTAGAGTTGGTTTGCTAGAACTAAGGTTGGTAATGCTGGGCTATA-----------------CTCTCTTTAGTAACAGAGACAAACAGTAAGATCCAGGA---------GGCAGCACTGGATTGAACTAAGCTGTCATGATTTCAACTCATGAGTCTGAAATTTTTCTGATTGGCA---CCATCCTACATCCAAGGGCTCCCAGAACAAAGCAACTACCCTG--TTTTTTT-CCATCCAAGTGGAAAT i mm10.chr19 C 0 I 146 s canFam3.chr1 35257235 274 - 122678785 CAGAGTGGGAGGCCCTTATTGGCACTAGTTTTGAGAGAATTA---ACTTGGGTTATGTAG----------GGTTAATAGCA-TGTGTTTTACTGAACACTTTGACCCATTTTTCCTTGCAAAGGAGACCAACTGTGAGACAAAAGAAAACTTGAAAGCAGTGCTTGATTTACCTCAGATGTCATCGTTTATCTTCATGAACCAGAAAATTCCTTGAT----GGGGCTGTGCCACATCCCAGGGGTTCCAGAATTAAGAGACTACTCTA-ATTTTCTT-TCATCCAAGTAGAAAT i canFam3.chr1 I 210 C 0 a score=2947055.000000 s hg38.chr9_GL383541v1_alt 47263 859 + 171286 AATTAGCTAAGGAACCAAGCATGAAT----CATAAGTCTA-G-GGTTTTGGTGAAAATA-TTTTTATGATCTTCT-------AATTTCGTAGGATTGAAATGACTGCTTATTTAACTTCTCTGAGCTGA---ATTGTCATAtgccttac----ttatttccctggattgtggtgaggttaatgaaggcggtggagacacaaagtgttttgtgaaccttaatattctatacatacgtgagg---tgttatttttatt----CTTA-TCAGTAAGATAAAGCCAAAGAAAGAGTTTGCATCATACAGCCTTTGGGTAATTTTTTACT-TCTGCAGTGGTTGAAAGCATTTCCATTTGGGGA---GTTGATG-------AGAAAGAGTATCAACAG-CCAGCAATTCTGGAGAGAATGCACACAGAC------AATATT-------------TAAAAAAAAT--TAATA-----------------------AGTTG-G-------------------------------------------------GGGGCAGAG----------------------GGAGAGCACGTGAGCTTGGA--------------------------------------GAATATTACTTATGAATAGATGAACAAAGGCTGAAGGAAGGGACCAAAAATGAAATTGGCGTTTCTCTTTAATTTACCTAAAAGTTTCTGGAAGCATATTAC-AAGTACATTACAAAATACAATATGAAGGAGGTAACTTGAGAGGCTGAATTTTAAAATTCAAATGTAAAATGTTTAAAAGAGCCCTCGTTTAGACTATTTGAGGTACTGCTCAGTATTAAAACCTTATCGAGTTT--------ATTAAAGATCAGCTGTCAATTAAGTAGATGTTATCAAT---ATGACTGACAATAATAATTTCAGATTTATTTATTATTAGAAAGTCTTTAGTGTTTTGGTAATTTGGGGA--AGGTAGAAGATACT-GACCCTCACCTAGTTT----------ATTTTGTTT-----TA----AATTCTGATGTAAAGTACAATGTATCATGTTTTCCT s panTro4.chr9 68612997 860 + 137840987 AATTAGCTAAGGAACCAAGCATGAAT----CATAAGTCTA-G-GGTTTTGGTGAAAATA-TTTTTATGATCTTCT-------AATTTCATAGGATTGAAATGACTGCTTATTTAACTTCTCTGAGCTGA---ATTGTCATAtgccttac----ttatttccctggattgtggtgaggttaatgaaggcagtggagacacaaagtgttttgtgaaccttaatattctatacatacgtgagg---tgttatttttatt----CTTA-TCAGTAAGATAAAGCCAAAGAAAGAGTTTGCATCATACAGCCTTTGGGTAATTTTTTACT-TCTGCAGTGGTTGAAAGCATTTCCATTTGGGGA---GTTGATG-------GGAAAGAGTATCAACAG-CCAGCAATTCTGGAGAGAATGCACACAGAC------aatatt-------------taaaaaaaaa-ataata-----------------------aGTTG-G-------------------------------------------------GGGGCAGAG----------------------GGAGAGCACGTGAGCTTGGA--------------------------------------GAATATTACTTATGAATAGATGAACAAAGGCTGAAGGAAGGGACCAAAAATGAAATTGGCGTTTCTCTTTAATTTACCTAAAAGTTTCTGGAAGCATATTAC-AAGTACATTACAAAATACAATATGAAGGAGGTAACTTGAGAGGCTGAATTTTAAAATTCAAATGTAAAATGTTTAAAAGAGCCCTCGTTTAGACTATTTGAGGTACTGCTCAGTATTAAAACCTTATTGAGTTT--------ATTAAAGATCAGCTGTCAATTAAGTAGATGCTATCAAT---ATGACTGACAATAATAATTTCAGATTTATTTATTATTAGAAAGTCTTTAGTGTTTTGGTAATTTGGGGA--AGGTAGAAGATACT-GACCCTCACCTAGTTT----------ATTTTGTTT-----TA----AATTCTGATGTAAAGAACAATGTATCATGTTTTCCT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64768661 863 + 135191526 AATTAGCTAGGGAACCAAGCATGAAT----CATAAGTCTA-G-GGTTTTGGTGAAAATA-TTTTTATGATCTTCC-------AATTTCATAAGATTGAAATGACTGCTTATTTAACTTCTCTGAGCTGA---ATTGTCATAtgccttac----tgatttccctggattgtggtgaggttaatgaaggcagtggagacacaaagtgttttgtgaaccttaatattctatacatacgtgagg---tgttatttttatt----CTTA-TCAGTAAGATAAAGCCAAAGAAAGAGTTTGCATCATACAGCCTTTGGGTAATTTTTTACT-TCTGCACTGGTTGAAAGCATTTCCATTGGGGGA---GTTGATG-------GGAAAGAGTATCAAGAG-CCAGCAATTCTGGAGAGAAAGCACACAGAC------aatatt-------------taaaaaaaaa-ttaata-----------------------aGTTG-G-------------------------------------------------GGGGCAGAG----------------------GGAGAGCACGTGAGCTTGGA--------------------------------------GAATATCACTTATGAATAGATGAACAAAGGCTGAAGGAAGGGACCAAAAATGAAATTGGCGTTTCTCTTTAATTTACCTAAAAGTTCCTGGAAGCATATTAC-AAATACATTACAAAATACAATATGAAAGAAGTAACTTGGGAGGCTGAATTTTAAAATTCAAATGTAAAATGTTTAAAAGAGCCCTCGTTTAGACTATTTGAGGTACTGCTCAGTATTAAAACCTCATTGAGTTT--------ATTAAAGATCAGCTGTCAATTAAGTAGATGCTATCAATATGATGATTGACAATAATAATTTCAGATTTATTTATTATTAGAAAGTCTTTAGTGTTTTGGTAATTTGGGGA--AGGTAGAAGATATT-GACCCTCACCTAGTTT----------ATCTTGTTT-----TA----AATTCTGATGTAAAGAACAATGTATCATGTTTTCCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57807523 851 - 122973662 AATTAGCTAAGGAACCAAGCATGAAT----CATAAGTCTA-G-GATTTTGGTGAAAATA-TTTTTGTGATCTTCC-------AATTTCATAAGATTGAAATGACTGCTTATTTAACTCCTCTAAGCCAA---ATTGTCATATGCCTTAC----TTATCTCCCTGGATTGTGGTGAGGTTAATGAAGGCAGTGGAGACACAAAGTGTTTTGTGAACCTTAATATTCTATACATACATGAGG---TGTTATTTTTATT----CTTA-TCAGTAAGATAAAGCCAAAGAAAGAGTTTGCATCATACAGCCTTTGGGTAATTTTTCACT-TCTGCACTGGTTGAAAACATTTCCATTTGGGGA---GTTGATA-------GGAAAGTGTATCAAGAG-CCAGCAATTCTGGAGAGAAAGCACACAGAC------AATATT-------------TTTAAAAAAC--TAA----------------------------TG-G-------------------------------------------------GGGGAAGGG----------------------GGAGAGCACGTGAGCTTGGA--------------------------------------GAATATTACTTATGAATAGATTAACAAAGGCTGAAGGAAGGGACCAAAAATGAAATTGGCGTTTCTCTTTAATTTACCTAAAAGTTCCTGGAAGCATAT-------TACATTACAAAATACAATATGGAGGAGGCAACTTGGGAGGCTGAATTTTAAAATTCAAATGTAAAATGTTTAAAAGAGCCCTTGTTTAGACTATTTGAGGTACTGCTCAGTATTAAAACCTCATCGAGTTT--------ATTAGAGATCAGCTGTCAATTAAGTAGATGCTATCAATATGATGACTGACAATAATAATTTCAGATTTATTTATTATTAGAAAGTCTTTAGTGTTTTGGTAATTTGGGAG--AGGTAGAAGATACT-GACCCTCACCTAGTTT----------ATCTTGTTT-----TA----AATTCTGATGTAAAGAACAACGTGTCATGTTTTCCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79737186 862 + 112192347 AATTAGCTAAGGAACCAAGCATGAAT----CATAAGTCTA-G-GGTTTTGGTGAAAATA-TTTTTATGATCTTCC-------AATTTCATAAGATGGAAATGACTGCTTATTTAACTTCTCTGAGCTGA---ACTGTCATAtgccttac----ttatctccctggattgtggtgaggttaatgaagacagtggagacacaaagtgttttgtgaaccttaatattctatacatacatgagg---tgttgtttttatt----CTTA-TCAGTAAGATAAAGCCAAAGAAAGAGTTTGCATCATACAGCCTTTGGGTAATTTTTTACT-TCTGCACTGGTTGAAAGCATTTCCACTTGGGGA---GTTGATA-------GGAAAGAGTATCAGGAG-TCAGTAATTCCGGAGCAAAAGCACACAGAC------AATATT-------------TTTAAAAAAC--TAATA-----------------------AGTTG-G-------------------------------------------------GGGGCAGAG----------------------GGAGAGCACCTGAGCTTGGA--------------------------------------GAATATTATTTATGAATAGATGAACAAAAGCTGAAGGAAGGGACCAAAAATGAAATTGGCATTTCTCTTTAATTTACTTAAAAGTTCCTGGAAGCATATTAC-AAGTACATTACAAAATACAATATGAAGGAGGTAACTTGAGAGGCTGAATTTTAAAATTCAAGTGTAAAATGTTTAAAAGAGCCCTTGTTTAGACTATTTGAGGGACTGCTCAATATTAAAACCTCATCAAGTTT--------ATTAAAGGTTAGCTGTCAGTTAAGTAGGTGCCATCAATATGATGACTGACAATAATAATTTCAGATTTATTTATTATTAGAAAGTCTTTAGTGTTTTGGTAATTTGGGGA--AGGTAAAAGATACT-GACCCTCACCTAGTTT----------GTCTTGTTT-----TA----AATTCTGATGTAAAGAACAACGTATCATGTTTTCCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80817997 862 + 112612857 AATTAGCTAAGGAACCAAGCATGAAT----CATAAGTCTA-G-GGTTTTGGTGAAAATA-TTTTTATGATCTTCC-------AATTTCATAAGATGGAAATGACTGCTTATTTAACTTCTCTGAGCTGA---ACTGTCATAtgccttac----ttatctccctggattgtggtgaggttaatgaagacagtggagacacaaagtgttttgtgaaccttaatattctatacatacatgagg---tgttgtttttatt----CTTA-TCAGTAAGATAAAGCCAAAGAAAGAGTTTGCATCATACAGCCTTTGGGTAATTTTTTACT-TCTGCACTGGTTGAAAGCATTTCCACTTGGGGA---GTTGATA-------GGAAAGAGTATCAGGAG-TCAGTAATTCCGGAGCAAAAGCACACAGAC------AATATT-------------TTTAAAAAAC--TAATA-----------------------AGTTG-G-------------------------------------------------GGGGCAGAG----------------------GGAGAGCACCTGAGCTTGGA--------------------------------------GAATATTATTTATGAATAGATGAACAAAAGCTGAAGGAAGGGACCAAAAATGAAATTGGCATTTCTCTTTAATTTACTTAAAAGTTCCTGGAAGCATATTAC-AAGTACATTACAAAATACAATATGAAGGAGGTAACTTGAGAGGCTGAATTTTAAAATTCAAGTGTAAAATGTTTAAAAGAGCCCTTGTTTAGACTATTTGAGGGACTGCTCAATATTAAAACCTCATCAAGTTT--------ATTAAAGGTTAGCTGTCAATTAAGTAGGTGCCATCAATATGATGACTGACAATAATAATTTCAGATTTATTTATTATTAGAAAGTCTTTAGTGTTTTGGTAATTTGGGGA--AGGTAAAAGATACT-GACCCTCACCTAGTTT----------GTCTTGTTT-----TA----AATTCTGATGTAAAGAACAACGTATCATGTTTTCCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76867403 859 + 107442819 AATTAGCTAAGGAACCAAGCATGAAT----CATAAGTCTA-G-GGTtttggtgaaaata-tttttatgatcttCC-------AATTTCATAAGATGGAAATGACTgcttatttaacttctctgagctga---ACTGTCATATGCCTTAC----TTATCTCCCTAGATTGTGGTGAGGTTAATGAAGACAGTGGAGACACAAAGTGTTTTGTGAACCTTAATATTCTATACATACATGAGG---TGTTGTTTGTATT----CTTA-TCAGTAAGATAAAGCCAAAGAAAGAGTTTGCATCATACAGCCTTTGGGTAATTTTTTACT-TCTGCACTGGTTGAAAGCATTTCCACTTGGGGA---GTTGATA-------GGAAAGAGTATCAGGAG-TCAGTAATTCCGGAGCAAAAGCACacagac------aatatt-------------tttaaaaaac--taata-----------------------agtTG-G-------------------------------------------------GGGGCAGAG----------------------GGAGAGCACCTGAGCTTGGA--------------------------------------GAATATTATTTATGAATAGATGAACAAAGGCTGAAGGAAGGGACCAAAAATGAAATTGGCATTTCTCTTTAATTTACTTAAAAGTTCCTGGAAGCATATTAC-AAGTACATTACAAAATACAATATGAAGGAGGTAACTTGAGaggctgaattttaaaattcaagtgtaaaatgtttaaaagagcCCTTGTTTAGACTATTTGAGGGACTGCTCAATATTAAAACCTCATCAAGTTT--------ATTAAAGGTTAGCTGTCAATTAAGTAGATGCCATCAATATGATGACTGAC---aataatttcagatttatttattattagaaaGTCTTTAGTGTTTTGGTAATTTGGGGA--AGGTAGAAGATACT-GACCCTCACCTAGTTT----------GTcttgttt-----ta----aattctgatgTAAAGAACAACGTATCATGTTTTCCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81130625 865 + 108555830 AATTAGCTAAGGAACCAAGCATGAAT----CATAAGTCTA-G-GGTTTTGGTGAAAATG-TTTTTATGATCTTCC-------AATTTCATAAGATGGAAATGACTGCTTATTTAACTTCTCTGAGCTGA---ACTGTCATAtgccttac----ttatctccctggattgtggtgaggttaatgaagatagtggagacacaaagtgttttgtgaaccttaatattctgtacatacatgagg---tgttgtttttatt----CTTA-TCAGTAAGGTAAAGCCAAAGAAAGAGTTTGCATCATACAGCCTTTGGGTAATTTTTTACT-TCTGCACTGGTTGAAAGCATTTCCACCTGGGGA---GTTGATA-------GGAAAGAGTATCAGGAG-TCAGTAATTCTGGAGCAAAAG--CACAGAC------AATATT-------------TTAAAAAAAC--TAATA-----------------------AGTTG-G-------------------------------------------------GGGGCAGAG----------------------GGAGAGCACCTGAACTTGGA--------------------------------------GAATATTACTTATGAATAGATGAACAACGGCTGAAGGAAGGGGCTAAAAATGAAATTGGCATTTCTCTTTAATTTACTTAAAAGTTCCTGGAAGCATATTAC-AAGTACATTACAAAATACAATATGAAGGAGGTAACTTGACAGGCTGAATTTTAAAATTCAAGTGTAAAATGTTTAAAAGAGCCCTCGTTTAGACTATTTGAGGGACTGCTCAGTATTAAAACCTCATCAAGTTTAGCTGTCAATTAAAGATTAGCTGTCAATTAAGTAGATGCCATCAAT---ATGACTGACAATAATAATTTCAGATTTATTTATTACTAGAAAGTCTTTAGTGTTTTGGTAATTGGGGGA--AGGTAGAAGATACT-GACCCTCACCTAGTTT----------GTCTTGTTT-----TA----AGTTCTGATGTAAAGAACAACATATCATGTTTTCCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111358664 852 - 210400635 AATTAGCTAAGAAATCAAGCATGAAT----CATAACTCTA-G-GGTTTTGGCAAAAATATTTTTTATGATCTTCA-------GATTTCATAAGCTCGAAATGCCTGCTTATTTAACTTCTCTGCGCTGA---ATTGTCGTGTGCCTTAC----TTATCTGTCTGGACTGTTGCGAGGTTAATGGAGTCAGTGGAGACACAAAGAGTTTTGTGAACCTTAATGTTCAATGCATACATTAGG---TGTTATTTTGATTCTTACTTA-TCAATAAGATAAAGCCAAAGACAGAATTTGCATCATACAGCCTTTGGGTAATTTTTTGCT-TTTGCACTGGTTGAAAGCATTT-CATTTGGAGA---GTTGATG-------GGAGAGAGTATCAAGAG-TCAGCAATTCCAGAGAGAAAGCACAAAGAC------AATTTT-------------TTTTAAAAAAGATAGTA-----------------------AGTTGCA-------------------------------------------------GGGGCAGAG----------------------GGAGAGCACCCAAGCTTGGA--------------------------------------GAAGATTAGTTATGAATAGATGAACAAAGGCTGAAGGAAGGGACCAACAATGAAATTGGTGTTTCTCTTTAATTTA---AAAAGATTCTGGAAGCATATTAC-AAGTACATTACAAAATGCAATATGAATGAGGTACCTTGGGAGGCTGAATTTTCAAATTCAAATGTACAGTG--TAAAAGCACCCTCGTTTACACTATTTGAGGAACTGCTCAGTATTTAAACCTCATCGAATTT--------ACTAATGATCAGCTGCCAGCTAAATAGATGCCATCAATATGATGACTGACAATAATAATTTCAGATTTATTTGTTATTAGAAAGTCTTTAGTGTTTTGGTAATCTGGTGA--AGGTAGAAGATTCT-GACCCTCACCTAGTTT----------ATCT---------------------AGGTGTAAAGAACACCGTATCATGTTTTCCT i calJac3.chr1 C 0 C 0 s mm10.chr19 38019035 840 - 61431566 ACTTAATCAAGCAGCAAAGCATGAGTTATATATAAGTCTACA-GGCTATTCT--------TTTTCATATTCTTTCTCACATTAATGTCGTGACATCAGAGCGACTGCTGA-GTAACTTATCTGAGCTGAGCTGCTGCTGTTTGCCTCACTATGTCATCCCCCAGGATTTCTGTGCAATTAACAGAGAT--TGAAGCTGGGCCATGTTTTATAAA-CGTAATGGTCCCTATACAAGTGAGC---TATAGCTTTTATTGTGACTTA-TTAATAACATAAAACCATGGAAAGAATTTGCATTATATAGCCTTTAGGTAACTTTTTTTTGTCAGCTCTGGTGGAAAGCGTTTCCATTTATGAATTTGTGGATA-------GGGGA-AGTATCAAAGGCTCAGCAGTTCCAGAAAGAAACCAAAGTGAT------AATTT--------------------AAAA--CAATA-----------------------AGGAG-G-------------------------------------------------AGGGGAGG--------------------------------CTGGGCTCAGA--------------------------------------CAGGATCTGATATCAATAGAC--AGAGAAGCCGAGGGAAGAGAA-AAACATGAAATTGACATTTTTCT-----------AAAAGTTCCTTCAAGCATATTTC-AGAGTGAATGC---ATGCACTCTAAAGCAGGGATGCTGGGCCACTGAATTTAGGAATGCAAATGTCATATGTTCTAAAGAAGCCTCATTCCCACTATTTTAGGGGCTGCTCAAGAGTAAAACATA-----------------ATGGAAGGTTTGCTGCCAATTTAGTGGATGCCATCAATATTATCATTACTGAAAAGACAAGCAG---TGTATGCT---------TCTCTTATGTGGTGG-AACCTgagggtctggtagaaggaattggagcctagcctgggttactcagtaagaccctgtctcaaaaca----aaacCAGACACAGAAAATAAAGTATCTTTTTTTTTT i mm10.chr19 I 146 I 110 s canFam3.chr1 35257509 1020 - 122678785 AATTAGCTGAGGCACCTAACATGAGTC---CATAGGTCTA-GAGGTTTTGGTGAAAGTG-T--------TCTTTC---------TTTCATGAGATCAAAATATCTGCTTATTTAATTTCTCTGAGCTGA---ATTGTCatctacccttc----ctatcttccaggattattgtgaggtcaatggagacggtggaaatataaaacgttttataaaccttaatattctacgcacacttaaggtattgttatttttAAT----CTTACTGAATAAGATGAAGCCAAAGATAGAATAGGCAACATGCAGTTGTTGGGTAATCTATTGCT-TCAGGGCTGGTTGAAAGCATTTCCATTTGGGGA---GGTGCTGCAGATGCGGGGAGAGAATCAAGAG-TCAGGAGGAGCAGAGGCGGAGCACCTGGGCTTACAGAAGATTGGTTCTAAGCTGATGAAGAAAGA--GAATGAAGGAggagtgcctggatggctcagttg-gttaagcatctgactcttgatttcagctcaggtcatgttctcagggtcctgggatagagcccctgtcaggttccacgctcagcagaaaatcttggcttgagattctcctcccctcCTGACTACAAGCACACTCTCAAATAAATAAACCTTAAAAagagagagagagagagagagagagagagaCTGAACTGAGATCTCTGTCTTTCTTTAATTTACCAAAAAGTTCCTGGGAACACATTCCAAAGTTGAGCTTATGCAACTGAAAGAGGTAGGTACACGGGGTGGCTGAATAGAACAAAATTAATGTGGAATATTTAAAAGAGCCCTTGTTTTGACTATTTTAGGAACTGTTCAGGATTAAAACCTCCTGGTGTTT--------ATTAAAGGTTGGCTGCCCGTTAGCTAGGTGCCACCAGTATTATGACTGATAATAATAATTTAACAATCATTTATTTTTAGGAAGTGTTTAGTATTATAGCAAGTTGGGGA--GAGCAGAAAATGCA-GA-CCTCATCTAGTTG----------ATTTTATTT-----CATTTTAATTCTTTTGAAAAGAACAAGGTATCCACTTTTTCT i canFam3.chr1 C 0 C 0 a score=82910.000000 s hg38.chr9_GL383541v1_alt 48122 25 + 171286 GACCATCAGTGTCACCTCAGCATAA s panTro4.chr9 68613857 25 + 137840987 GACCATCAGTGTCACCTCAGCATAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64769524 25 + 135191526 GACCATCAGTGTCACCTCAGCATAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57808374 25 - 122973662 GACCATCAGTGTCACCTCAGCACAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79738048 25 + 112192347 GCCCAGCAGTGTCACTTCAGCATAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80818859 25 + 112612857 GCCCAGCAGTGTCACCTCAGCATAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76868262 25 + 107442819 GCCCAGCAGTGTCACCTCAGCATAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81131490 25 + 108555830 GCCCAGCAGTGTCACCTCAGCATAA i chlSab2.chr12 C 0 I 9 s calJac3.chr1 111359516 25 - 210400635 GCCCAGCAGAGTCACCTCAGCATAA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35258529 25 - 122678785 GCCCAGCAGCAACATCCCCATATAA i canFam3.chr1 C 0 C 0 e mm10.chr19 38019875 110 - 61431566 I a score=1723.000000 s hg38.chr9_GL383541v1_alt 48147 13 + 171286 CCCGGGAGGTGCT s panTro4.chr9 68613882 13 + 137840987 CCCGGGAGGTGCT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64769549 13 + 135191526 CCCGGAAGGTGCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57808399 8 - 122973662 ACC-----CTTCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79738073 8 + 112192347 -----AACCTTCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80818884 8 + 112612857 -----AACCTTCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76868287 8 + 107442819 -----AACCTTCT i papAnu2.chr15 C 0 C 0 s calJac3.chr1 111359541 8 - 210400635 -----AACCTTCT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35258554 9 - 122678785 ----AACCAGTCT i canFam3.chr1 C 0 C 0 e mm10.chr19 38019875 110 - 61431566 I e chlSab2.chr12 81131515 9 + 108555830 I a score=11930.000000 s hg38.chr9_GL383541v1_alt 48160 5 + 171286 -CAAAT s panTro4.chr9 68613895 5 + 137840987 -CAAAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64769562 5 + 135191526 -CAAAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57808407 5 - 122973662 -CAAAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79738081 5 + 112192347 -CAAAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80818892 5 + 112612857 -CAAAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76868295 5 + 107442819 -CAAAT i papAnu2.chr15 C 0 C 0 s calJac3.chr1 111359549 5 - 210400635 -CATAT i calJac3.chr1 C 0 C 0 s mm10.chr19 38019985 5 - 61431566 -CAAAT i mm10.chr19 I 110 I 23 s canFam3.chr1 35258563 5 - 122678785 CCAGG- i canFam3.chr1 C 0 C 0 e chlSab2.chr12 81131515 9 + 108555830 I a score=1784729.000000 s hg38.chr9_GL383541v1_alt 48165 562 + 171286 AAATGTGGTTCACCATGATCACCAGTCCCACTGTGGGGTGACTGATCTGCCTAAAGCCCAAGTTTCCAATGAGTACATTCCTGAGTCTGGCTGAGGCTTC---TTTCCTCAAGGTAAGAACTCAAGAATTCATCCTGAATTCTAGTCC-TTTCCAACATAGATTACAAATGCTCTTAATTTTAGA---ATGGTGATACTGTATCTAATAGAATAATAGtagtagctttatacttatc-aatgttttctat-ataccagccataattcattgaatcctcacaacaaatctatgagctggacattggtattattattatccccac--cgatagatgaggaaatggtggcacggtgaaaaaagttaagtaacttgcccaggCTATATTGAGTTGAATT----TGAATCTAGGGAGTGTGGA-TTCTTCACCATGAGACTGTATTGTCTCTTTGAGC--------------------------------------TAAATAATTGTGTCTATCTCTGCCAT-TTAAGAAAAG----------AAAAGGTTAAGACAAAAAAAAGTACACTAAAAATTAAAGGCAAAAAAAGCAAATTTTTT-TTAAAAAAAGATGAAAACACATTTTCATTC s panTro4.chr9 68613900 561 + 137840987 AAATGTGGTTCACCATGATCACCAGTCCCACTGTGGGGTGACTGATCTGCCTAAAGCCCAAGTTTCCAATGACTACATTCCTGAATCTGGCTGAGGCTTC---TTTCCTCAAGGTAAGAACTCAAGAATTCACCCTGAATTCTAGTCC-TTTCCAACATAGATTACAAATGCTCTTAATTTTAGA---ATGGTGATACTGTATCTAATAGAATAATAGtagtagctttatacttatc-aatgttttctat-ataccagccataattcattgaatcctcacaacaaatctatgagctggacattggtattattattatccccac--tgatagatgaggaaatggtggcacggtgaaaaaagttaagtaacttgcccaggctatattgagttgaatt----tgaatctagggagtgtgga-ttcTTCACCATGAGACTGTATTGTCTGTTTGAGC--------------------------------------TAAATAATTGTGTCTATCTCTGCCAT-TTAAGAAAAG----------AAAAGGTTAAGACAAAAAAAAGTACACTAAAAATTAAAGGCAAAAAAAGCAAATTTTTT-A-AAAAAACGATGAAAACACATTTTCATTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64769567 557 + 135191526 AAATGTGGTTCAACGTGATCACCAGTCCCACTATGGGGTGACTGATCTGCCTAAAGCCCAAGTTTCCAATGAGTACATTCCTGAGTCTGGCTGAGGCTTC---TTTCCTCAAGGTAAGAACTCAAGAATTCACCCTGAATTCTAGTCC-TTTCCAACACAGATTACAAATGCTCTTAACTTTAGA---ATGGTGATACTGTATCTAATAGAATAATAGtagtagctttatacttatc-aatgttttctat-ataccagccataattcattgaatcctcacaacaaatctatgagctggacgttggtattattattatccccac--tgatagatgaggaaatggtggcacggtgaaaaaagttaagtaactttcccaggCTATATTGAATTGAATT----TGAATCTAGGGAGTGTGGA-TTCTTCACCATGAGACTGTATTGTCTCTTTGAGC--------------------------------------TAAATAATTGTGTCTATCTCTGCCAT-TTAAGAAAAG----------AAAAGGTTAAGACAAAAAAAAGTACACTAAAAATTAAAGGCAAAAA----AAATTTTTT-T-CAAAAAAGATGAAGATACAtttttattc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57808412 559 - 122973662 AAATGTGGTTCACCATGATCACCAGTTCCACTATGGGGTGACTGATCTGCCTAAAGCCCAAGTTTCCAATGAGTACATTCCTGAGTCTGGCTGAGGCTTC---TTTCCTCAAGATAAGAACTCAAGAATTCACCCTGAATTCTAGTCC-TTTCCAACACAGACTACAAATGCTCTTAATTTTAGA---ATGGTGATACTGTATCTAATAGAATAATAGtagtagctttatacttatc-aacgttttctat-ataccagccataactcattgaatcctcacaacaaatctatgagctagacgttggtattattattatccccac--tgatagatgaggaaatgctgacatggtgaaaaaagttaagtaacttgcccaggctatattgagttgaatt----tgaatctagggagtgtgga-ttcttcagCATGAGACTGTATTGTCTCTTTGAGC--------------------------------------TAAATAATTGTGTCTATCTCTGCCAT-TTAAGAAAAG----------AAAAGGCTAAGAC--AAAAAAGTGCACTAAAAATTAAAGGCAAAAAAAGCACTTTTTTA-A-AAAAAAAGATGAAAACACAtttttattc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79738086 568 + 112192347 AAATGTGGTTCACCATGATCACCAGTCCCACTGTGGGGTGACTGATCTGCCTAAAGCCCAAGTTTTCAATGAGTACATTCCTGAGTCTGGCTGAGGCTTC---TTTCCTCAAGGCAAGAACTCGAGAATTCACCCTGAATTCTAGTCC-TTTCCAATGTAGATTACAAATGTTCTTAATTTTAGA---ATGGTGACACTATATCTAATAGAATAATAGtagtagctttatacttatc-aacattttctat-ataccagccataactcattgaatcctcacaacaaacctatgagctggacattggtgttattattatccccac--tgagagatgaggaaatggtggcacagtgaaaaaagttaagtaacttgcccaggCTATATTGAGTTGAGTTTGAATGAATCTAGAGAGTGTAGA-TTCTTCACCATGAGAC-GTAGTGTCTCTTTGAGC--------------------------------------TAAATAATTGTGTCTGTCTCTGCCAT-TTAAGAAAAG-----AAAAAAAAAGGCTAAGAC-AAAAAAGGTGCACTAAAAATTAAAGGTGAGAAAAGCACATTTAAG-A-AAAAAAAGATGAAAACACAtttttattc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80818897 573 + 112612857 AAATGTGGTTCACCATGATCACCAGTCCCACTGTGGGGTGACTGATCTGCCTAAAGCCCAAGTTTTCAATGAGTACATTCCTGAGTCTGGCTGAGGCTTC---TTTCCTCAAGGCAAGAACTCGAGAATTCACCCTGAATTCTAGTCC-TTTCCAATGTAGATTACAAATGTTCTTAATTTTAGA---ATGGTGACACTATATCTAATAGAATAATAGTAGTAGCTTTATACTTATC-AACATTTTCTAT-ATACCAGCCAtaactcattgaatcctcacaacaaacctatgagctggacattggtgttattattatccccac--tgagagatgaggaaatggtggcacagtgaaaaaagttaagtaacttgcccaggCTATATTGAGTTGAGTTTGAATGAATCTAGAGAGTGTAGA-TTCTTCACCATGAGAC-GTAGTGTCTCTTTGAGC--------------------------------------TAAATAATTGTGTCTGTCTCTGCCAT-TTaagaaaagaaaaaaaaaaaaaaggctaagac-aaaaaaaGTGCACTAAAAATTAAAGGTGAGAAAAGCACATTTAAG-A-AAAAAAAGATGAAAACACACttttattc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76868300 573 + 107442819 AAATGTGGTTCACCATGATCACCAGTCCCACTGTGGGGTGACTGATCTGCCTAAAGCCCAAGTTTTCAATGAGTACATTCCTGAGTCTGGCTGAGGCTTC---TTTCCTCAAGGCAAGAACTCGAGAATTCACCCTGAATTCTAGTCC-TTTCCAATGTAGAttacaaatgttcttaattttaGA---ATGGTGACACTATATCTAATAGAATAATAGTAGTGGCTTTATACTTATC-AACATTTTCTAT-ATACCAGCCAtaactcattgaatcctcacaacaaatcTATGAGCTGGACATTGgtgttattattatccccac--tgaGAGATGAGGAAATGGTGGCACAGTgaaaaaagttaagtaacttgcccaggctATATTGAGTTGAGTTTGAATGAATCTAGAGAGTGTAGA-TTCTTCACCGTGAGAC-GTAGTGTCTCTTTGAGC--------------------------------------TAAATAATTGTGTCTGTCTCTgccat-ttaagaaaag--aaaaaaaaaaaaggctaagacaaaaaaaagtgcactaaaaattaaaggtgagaaaagcacatttaagaa-aaaaaaagatgaaaacacatttttattc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81131524 565 + 108555830 AAATGTGGTTCACCATGATCACCAGTCCCACTGTGGGGTGACTGATCTGCCTAAAGCCCAAGTTTCCAATGAGTACATTCCTGAGTCTGGCTGAGGCTTC---TTTCCTCAAGGCAAGAACTCGAGAATTCACCCTGAATTCTAGTCCTTTTCCAATGTAGATTACAAATGCTCTTAATTTTAGA---ATGGTGATACTATGTCTAATAGAATAATAGTAGTAGCTTCATACTTATC-AACATTTTCTAT-ATACCAGCCAtaactcattgaatcctcacaacagacatatgagctggacactggtgttattattgtccccac--tgagagatgaggaaatggtggcacagtgaaaaaagttaaataacttgcccaggCTATATTGAGTTGAGTTTGAATGAATCTAGAGAGTGTAGA-TTCTTCACCATGAGACTGTAGTGTCTCTTTGAGC--------------------------------------TAAATAATTGTGTCTGTCTCTGCCAT-TTAAGAAAAG----------AAAAGGCTAAGAC-AAAAAAAGTGCACTAAAAATTAAAGGTGAGAAAAGCACATTTAAG-A-AAAAAAAGATGAAAACACAtttttattc i chlSab2.chr12 I 9 C 0 s calJac3.chr1 111359554 542 - 210400635 AAATGTGGTCCACCATGACCGCCAGTCTCACTGTGAGCTGACTTATCTGCCTAAAGCCCAAGTTTCCAATGAATACACTTGTAGGTCTGGCTGAGGC-CC---CCTCCTCAAGGTAAGAACTCAAGAAGCCATACTGAATTCTAGTTC-TTTCCAGTGTAGATTACAAATGCTCTTAATTTTAGA---ATGGTGATACTG------------CAATGGTAGTAGCTTTATGCTTGTC-AACATTTTCTGT-ATACCAGCCAtaactcattgaatcctcacaacaaatctgtgagctggacaatggtattcatgttatccccac--tgacagatgaggaattggagacacggtg-aaaaagttaagtaacttgcccaggctatactgagttgaatc----tgaatctagggagtatgga-ttcTTCACCATGAGGTTGTATTGTCTCTTTGAGC--------------------------------------TAAGTAATTGTGTCTGTCACTACCAT-TTAAGAAAAG----------AAAAGCCTAA-AC--AAAAACTTGCAC-AAAAATTAAAGGCAAGAAAAGCACATTTTA--A-AAGAAAAGATGAAAACACGtttttcttc i calJac3.chr1 C 0 C 0 s mm10.chr19 38020013 428 - 61431566 GAATTTGGTTCTCAGTGATCCCAGGTTCTATCACTGTATGAAGTTTCTGAC-AGGACCTAACTTTCCAAGGATCAAATTTCCCATTCTGGCCAGGGTCTT---TCTCTTC------AGGATTCATGG--TTATCTTAAATTCCAGTTC-CTTGC-----------TCAGTTGTCTCAATCT----------ATGATTTTGCTTACGCTTGACCAATAGTGGCATCTTCGTGCTTCTCAAACATGTTCTACAATAGCAACCGGGGCTCATCTGGCCCTAACTGCAAATCTCTGGGC--------GGTAGCACTGATATTCACAC--TT---------------------TAGTTGAAACTGTC------TTTGTTCTGGTAAAGCTTCCCTGGGTT----TGCATCTAGCCAATGTGGGCTTTCCCCCCACCAGGCCATGTTGTATTTCTAATC--------------------------------------TCAATAGCTGCATTCC-------------------------------CAAAGTCTTGAAT-----------------------------------------------C-AACAGCAGATTACCACGCAT-------- i mm10.chr19 I 23 C 0 s canFam3.chr1 35258568 574 - 122678785 AAATTTGATTCACAGTTA-CACTGGCCCCATCACTGTGTGACTAGTCTGCTGGA----CTAGTTCCCAGGGGGTAAATGTCTGGGTTTAGCTGAAGCCCCCCTTTTCCTTGGGACCAGTACTCAATACATGACCTTGAATTCTAGTTC-CTTCCAGAGTAGACTATAAATTTTCTCAATTTTAGAAATATGATGATGCTGTGTATGCAAGAATAATAGAGGCAGCCTCATACTTCTCAAATATTTTCTAC-CTAGCAGCCATAG-TAatttaatcttcacaaaaaatctgtgagctggatgctggtgctactattatccccacgtttataggtgaggaaatt------cagtgaaga------agtaacttggcccgatgatcctgaattggatt----tgaatctaggcaatctggg-ttcTT------------ATATTGTCTCTCTAAATACTTGCATTCCCAAACTTCTGAAATATTGGAAGATCAATAGCTATTTGTCTCTATCTCTGCCATATTAAAAAAAG----------AAAAGTCTGAGAT--AAAAGAGTCCACAAAAAATTAAAGGTGAGAGAGGTACATTTGA--A-GAGGAAAGATGTAAACGTGTTTTTTT-- i canFam3.chr1 C 0 C 0 a score=41267.000000 s hg38.chr9_GL383541v1_alt 48727 18 + 171286 --TAtttttttttctta-ttt s panTro4.chr9 68614461 18 + 137840987 --TAtttttttttctta-ttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64770124 18 + 135191526 --tatttttttttctta-ctt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57808971 19 - 122973662 --tattttttttttctgtttt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79738654 18 + 112192347 --tattttttttttctt-ttt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80819470 18 + 112612857 --tattttttttttctt-ttt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76868873 20 + 107442819 ttttttttttttttctt-ttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81132089 18 + 108555830 --tattttttttttctt-ttt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111360096 18 - 210400635 --tttttttttttcttc-ttt i calJac3.chr1 C 0 M 422 e mm10.chr19 38020441 0 - 61431566 C e canFam3.chr1 35259142 0 - 122678785 C a score=172781.000000 s hg38.chr9_GL383541v1_alt 48745 79 + 171286 ggagacagagtctcgctctgtcc---------actggagtgcagtggtgcaatctcggct-cactgcaacctccgcctgccaggttcaa s panTro4.chr9 68614479 79 + 137840987 ggagacagagtctcgctctatcc---------actggagtgcagtggtgcaatctcggct-cactgcaacctccgcctgccaggttcaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64770142 88 + 135191526 ggagacagagtctcgctctatcccccagccaggctggagtgcagtggtgcaatctcagct-cactgcaacctccgcctgccaggttcaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57808990 88 - 122973662 ggagacagaatctcgctttatcccccagccgggctggagtgcagtggtgcaatctcggct-cactgcaacccccgccttccaggttcaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79738672 88 + 112192347 ggagacagagtctcactgtatcccccaaccaggctggagttcagtggcatgatctcagct-cactgcaacctctgcctcccaggttcaa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80819488 88 + 112612857 ggagacagagtctcactgtatcccccaaccaggctggagttcagtggcatgatctcagct-cactgcaacctctgcctcccaggttcaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76868893 88 + 107442819 ggagacagagtctcactgtatcccccaaccaggctggagttcagtggcatgatctcagct-cactgcaacctctgcctctcaggttcaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81132107 86 + 108555830 ggagac--agtctcactgtatcccccaaccaggctggagttcagtggtgtgatctcagct-cactgcaacctctgcctcctaggttcaa i chlSab2.chr12 C 0 C 0 s mm10.chr19 38020441 35 - 61431566 -------------------------------------------GTGTTCCCATCTCAGCCACACTAAAACCTAAGCCT----------- i mm10.chr19 C 0 C 0 e canFam3.chr1 35259142 0 - 122678785 C e calJac3.chr1 111360114 422 - 210400635 M a score=234917.000000 s hg38.chr9_GL383541v1_alt 48824 83 + 171286 gcgattctcctgcttcagcctcccgagtagctgggattacaggcatgtgccaccacac-cagctaatttttgta-tttttagtag s panTro4.chr9 68614558 83 + 137840987 gcgattctcctgcctcagcctcccgagtagctgggattacaggcatatgccaccacac-cagctaatttttgta-tttttagtag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64770230 83 + 135191526 gtgattctcctgcctcagccccccgagtagctgggattacaggcatgtgccaccacac-cagctaatttttgta-tttttagtag i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57809078 83 - 122973662 gcgattctcctgcctcagcctcccgagtagctgggattacaggcatgtgccaccacac-cagctaatttttgta-tttttagtag i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79738760 84 + 112192347 gcgattctcctgcctcagcctctggagtagctgggattacagacatgcaccaccacacccggctaatttttgta-tttttagtag i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80819576 84 + 112612857 gcgattctcctgcctcagcctctggagtagctgggattacagacatgcaccaccacacccggctaatttttgta-tttttagtag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76868981 84 + 107442819 gtgattctcctgcctcagcctctggagtagctgggattacagacatgcaccaccacacccggctaatttttgta-tttttagtag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81132193 84 + 108555830 gcgattctcctgcctcagcctctggagtagctgggattacagacatgcaccaccacacacggctaatttttgta-tttttagtag i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111360540 85 - 210400635 gtgattctcctgcctcagcctcctgaatggctgggattataggtatgtgccaccacacttggctaatttttgtattttttagtag i calJac3.chr1 M 422 C 0 s mm10.chr19 38020476 40 - 61431566 ---------------------------TAG--------AAAGGCATAGCCCAAAATGA-AAAC--------ATA-TTTTTATTAG i mm10.chr19 C 0 C 0 e canFam3.chr1 35259142 0 - 122678785 C a score=326499.000000 s hg38.chr9_GL383541v1_alt 48907 114 + 171286 agatggagtttcaccatgttggccaggctagtcgcaaattcctgacctcaagtgatcc-cccaccttggcctcccaaagtgctgggattacaggtgtgagccactgaatccagcc s panTro4.chr9 68614641 114 + 137840987 agagggagtttcaccatgttggccaggctagttgcaaattcctgacctcaagtgatcc-cccaccttggcctcccaaagtgctgggattacaggtatgagccactgaatccagcc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64770313 115 + 135191526 agatggagtttcaccatgttggccaggctagtcgcgaattcctgacctcaagtgatccacccaccttggcctcccaaagtgctgggattacaggtgtgagccgctgaatccagcc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57809161 115 - 122973662 agatggagtttcaccatgttggccaggctagtcgcgaattcctgacctcaagtgatctacccaccttggcctcccaaagtgctggcattacaggtgtgagccactgaatccagcc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79738844 115 + 112192347 agacagagtttctccatgttggccaggctggtctcaaactcttgacctcaagtgatccgcccacctcagcttcccaaagtgctgggattacaggtgtgagccactgaacccaacc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80819660 115 + 112612857 agacagagtttctccatgttggccaggctggtctcaaactcttgacctcaagtgatccacccacctcagcttcccaaagtgctgggattacaggtgtgagccactgaacccaacc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76869065 115 + 107442819 agacagagtttctccatgttggccaggctagtctcaaactcttgacctcaagtgatccacccacctcagcttcccaaagtgctgggattacaggtgtgagccactgaacccaacC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81132277 115 + 108555830 agacagagtttctccatgttggccaggctaatctcaaactctcgacctcaagtgatccacccacctcagcttcccaaagtgctgggattacaggtgtgagccactgaacccaacc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111360625 113 - 210400635 agataggg-ttcaccgtgttggccaggctggtctc-aacccctgacctcaagtgatccacccacctcagcctcccaaagtgctgggattagaagtgtgaaccacTAAACACAGCC i calJac3.chr1 C 0 C 0 e mm10.chr19 38020516 0 - 61431566 C e canFam3.chr1 35259142 0 - 122678785 C a score=11258.000000 s hg38.chr9_GL383541v1_alt 49021 5 + 171286 TATTA s panTro4.chr9 68614755 5 + 137840987 TATTA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64770428 5 + 135191526 TATTA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57809276 5 - 122973662 TATTA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79738959 5 + 112192347 TACTA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80819775 5 + 112612857 TACTA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76869180 5 + 107442819 TACTA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81132392 5 + 108555830 TACTA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111360738 2 - 210400635 TA--- i calJac3.chr1 C 0 C 0 s canFam3.chr1 35259142 5 - 122678785 TACTA i canFam3.chr1 C 0 C 0 e mm10.chr19 38020516 0 - 61431566 C a score=263698.000000 s hg38.chr9_GL383541v1_alt 49026 69 + 171286 TTTCTATTTAAGATGCAACAGAGATTTGTGTAAGGAAATG-ACAAATAGGCAGT--GCAAGTAAAGCTTACA s panTro4.chr9 68614760 69 + 137840987 TTTCTATGTAAGATGCAACAGAGATTTGTGTAAGGAAATG-ACAAATAGGCAGT--GCAAGTAAAGCTTACA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64770433 69 + 135191526 TTTCTATTTAAGATGCAACAGAGATTTGTGTAAGGAAATG-ACAAATAGGCAGT--GCAAGTAAAGCTTACA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57809281 69 - 122973662 TTTCTATTTAAGATGCAACAGAGATTTGTTTAAGGAAATG-ACAAATAGGCAGT--GCAAGTAAAGCTTACA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79738964 68 + 112192347 CTTCTATTT-AGATGCAACACAGATCTGTGTAAGGAAATG-ACAAATAGGCAGT--GCAAGTAAAGCTTACA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80819780 68 + 112612857 CTTCTATTT-AGATGCAACACAGATCTGTGTAAGGAAATG-ACAAATAGGCAGT--GCAAGTAAAGCTTACA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76869185 68 + 107442819 CTTCTATTT-AGATGCAACACAGATCTGTGTAAGGAAATG-ACAAATAGGCAGT--GCAAGTAAAGCTTACA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81132397 68 + 108555830 CTTCTATTT-AGATGCAACACAGATCTGTGTAAGGAAATG-ACAAATAGGCAGT--GCAAGTAAAGCTTACA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111360740 68 - 210400635 -TTCTATTTAAGACGCAACAGAGATTTGTGTAAGGAAATG-ACAAATAGGCAGT--GCGAGTAAAGCTTACA i calJac3.chr1 C 0 C 0 s mm10.chr19 38020516 69 - 61431566 CTTCTATTTAAGATGCAACAGAGCCCTGCG--AGGAAATG-AGAAATGGACTGTCAGTGAGTTCAGCTCTCA i mm10.chr19 C 0 C 0 s canFam3.chr1 35259147 72 - 122678785 CTTCTATTTAAGATGCCACAGAGATTTCTGTAAGGAAATGAACAAATTGTCTGCAGAAGAGTAAAGCTTTCA i canFam3.chr1 C 0 I 248 a score=38228.000000 s hg38.chr9_GL383541v1_alt 49095 15 + 171286 TATCTGCAAATGTCT s panTro4.chr9 68614829 15 + 137840987 TATCTGCAAATGTCT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64770502 15 + 135191526 TATCTGCAAATGTCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57809350 13 - 122973662 TATCTACAAATG--T i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79739032 15 + 112192347 TATCTGCAAATGTGT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80819848 15 + 112612857 TATCTGCAAATGTGT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76869253 15 + 107442819 TATCTGCAAATGTGT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81132465 15 + 108555830 TATCTGCAAATGTGT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111360808 15 - 210400635 TATCTGCAAATGTGT i calJac3.chr1 C 0 C 0 s mm10.chr19 38020585 1 - 61431566 --------------T i mm10.chr19 C 0 C 0 e canFam3.chr1 35259219 248 - 122678785 I a score=1689504.000000 s hg38.chr9_GL383541v1_alt 49110 460 + 171286 TGCCAAGCTTAAATATCTGAAAATACGTGGTTTAAAAGGAAGAAGGCTTTCACTTCTGATAAGCCAAGTTTGTTTTAATTTGTGGTACTTGTACATCTTGTACCTGAAGAGCACTGAATATTTATAAT-----AAAGGTTCCTAGTTGTTTTA-AAACCAAAACAAAAATAAG-AGCTG-GTG----------------TAGGGGCTGATTCATCC--------CAAG-----------------------AGGAAATTCTTGT--GGAGTGGACT-CTCACTTTATCTTGTCCAGATTCCTGAATGGTCACTTCAAATGTCAATGTGATCTCTGCAGCTTGGATACCTCTCCTTAAGCTAC-TAAAGGGTCTCATGAACTCTGGGTTTTGGCCGAGGACATTGAAAAGACTAGTTGGAAAAAA-------CTACCATTCTGCAGTGATTCATAGGCAGTATGCTAGCAGCTTTCAAATAATGTGAATTATATACAGGATCCTAGCAATTTTCAAATAGTGATCAA s panTro4.chr9 68614844 460 + 137840987 TGCCAAGCTTAAGTATCTGAAAATATGTGGTTTAAAAGGAAGAAGGCTTTCACTTCTGATAAGCCAAGTTTGTTTTAATTTGTGGTACTTGTACATCTTGTACCTGAAGAGCACTGAATATTTATAAT-----AAAGGTTCCTAGTTGTTTTA-AAACCAAAACAAAAATAAG-AGCTG-GTG----------------TAGGGGCTGATTCATCC--------CAAG-----------------------AGGAAATTCCTGT--GGAGTGGACT-CTCACTTTATCTTGTCCAGATTCCTGAATGGTCACTTCAAATGTCAATGTGATCTCTGCAGCTTGGATACCTCTCCTTAAGCTAC-TAAAGGGTCTCATGAACTCTGGGTTTTGGCCAAGGACATTGAAAAGACTAGTTGGAAAAAA-------CTACTATTCTGCAGTGATTTATAGGCAGTATGCTAGCAGCTTTCAAATAATGTGAATTATATACAGGATCCTAGCAATTTTCAAATAGTGATCAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64770517 457 + 135191526 TGCCAAGCTTAAGTATCTGAAAATATGTGGTTTAAAAGGAAGAAGGCTTTCACTTCTGATAAGCCAAGTTTGTTTTAATTTGTGGTACTTGTACATCTTGTACCTGAAGAGCACTGAATATTTATAAT-----AAAGGTTCCTAGTTGTTT----AATAAAACCAAAAATAAG-AGCTG-GTG----------------TAGGGGCTGATTCATCC--------CAAG-----------------------AGGAAATTCTTAT--GGAGTGGACT-CTTACTTTATCTTGTCCAGATTCCTGAATGGTCACTTCAAATGTCAATGTGATCTCTGCAGCTTGGATACCTCTCCTTAAGCTAC-TAAAGGGTCTCATGAACTCTGGGTTTTGGCCAAGGACATTGAAAAGACTAGTTGGAAAAAA-------CTACTATTCTGCAGTGATTTGTAGGTAGTATGCTAGCAGCTTTCAAATAATGTGAATTATATACAGGATCCTAGCAACTTTCAAATAGTGATCAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57809363 460 - 122973662 TGCCAAGCTTAAGTATCTGAAAACATGTGGTTTAAAAGGAAGAAGGCTTTCACTTCTGATAAGCCAACTTTGTTTTAATTTGTGGTACTTGTACATCTTGTACCTGAAGAGCACTGAGTATTTATAAT-----AAAGTTTCCTAGTTGTTTTA-AAACCAAAACAAAAATAAG-AGCTG-GTG----------------TAGGGGCTGATTCATCC--------CAAG-----------------------AGTAAATTCTTGT--GGAGTGGACT-CTCACTTTATCTTGTCCAGATTCCCGAATGGTCACTTCAAATGTCAATGTGATCTCTGCAGCTTGGATACCTCTCCTTAAGCTAC-TAAAGGGACTCATTAACTCTGGGTTTTGGCCAAGGACATTGAAAAGACTAGTTGGAAAAAA-------CTACTATTCTGCAGTGATTTGTAGGCAGTATGCTAGCAGCTTTCAGATAATGTGAATTATATACAGGATCCTAGCAACTTTCAAATAGTGATCAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79739047 461 + 112192347 TTCCAAGCTTAAGTATCTGAAAATATGTGGTTTAAAAGGAAGAAGGCTTTGACTTCTGATAAGCCAAGTTTGTTTTAATTTGTGGTTCTTGAACATTTTGTACCTGAAGAGCACTGAATTTTTATAAT-----AAAGGTTCCTAGTTGTTTTA-AAACCAAAACAAAAATAAG-AGCTG-GTA----------------TAGGGGCTGATTCATCC--------CAAA-----------------------AGGAAATTCTTGT-GGGAGTAGAGT-CTCTCTTTATCTTGTCCAGATTCCCGGATGGTCACTTCAAATGTCAATGTGATCTCTGCAACTTGGATACCTCTCCTTAAGCTAC-TAAAGGGATTCATGAACTCTGGCTTTTGGCCAAGGACATTGAAAAGACTAGTTGGAAAAAA-------CTACTATTCTGCAGTGATTTCTAGGCAGTGTGCTAGCAGCTTTCAAATAATGAGAATTATATACAGGATCCTAGCAACTTTCAAATAGTGATCAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80819863 461 + 112612857 TTCCAAGCTTAAGTATCTGAAAATATGTGGTTTAAAAGGAAGAAGGCTTTGACTTCTGATAAGCCAAGTTTGTTTTAATTTGTGGTTCTTGAACATTTTGTACCTGAAGAGCACTGAATTTTTATAAT-----AAAGGTTCCTAGTTGTTTTA-AAACCAAAACAAAAATAAG-AGCTG-GTA----------------TAGGGGCTGATTCATCC--------CAAA-----------------------AGGAAATTCTTGT-GGGAGTAGAGT-CTCTCTTTATCTTGTCCAGATTCCCGGATGGTCACTTCAAATGTCAATGTGATCTCTGCAACTTGGATACCTCTCCTTAAGCTAC-TAAAGGGATTCATGAACTCTGGCTTTTGGCCAAGGACATTGAAAAGACTAGTTGGAAAAAA-------CTACTATTCTGCAGTGATTTCTAGGCAGTGTGCTAGCAGCTTTCAAATAATGAGAATTATATACAGGATCCTAGCAACTTTCAAATAGTGATCAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76869268 461 + 107442819 TTCCAAGCTTAAGTATCTGAAAATATGTAGTTTAAAAGGAAGAAGGCTTTCACTTCTGATAAGCcaagtttgttttaatttgtggTTCTTGAACATTTTGTACCTGAAGAGCActgaatatttataat-----aaaggTTCCTAGTTgtttta-aaaccaaaacaaaaataag-agttG-GTA----------------TAGGGGCTGATTCATCC--------CAAA-----------------------AGGAAATTCTTGT-GGGAGTGGAGT-CTCTCTTTATCTTGTCCAGATTCCCGGATGGTCACTTCAAATGTCAATGTGATCTCTGCAACTTGGATACCTCTCCTTAAGCTAC-TAAAGGGATTCATGAACTCTGGCTTTTGGCCAAGGACATTGGAAAGACTAGTTGGAAAAAA-------CTACTATTCTGCAGTGATTTGTAGGCAGTGTGCTAGCAGCTTTCAAATAATGAGAATTATATACAGGATCCTAGCAACTTTCAAATAGTGATCAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81132480 461 + 108555830 TTCCAAGCTTAAGTATCTGAAAATATGTGGTTTAAAAGGAAGAAGGCTTTCACTTCTGATAAGCCAAGTTTGTTTTAATTTGTGGTACTTGTACATCTTGTACCTGAAGAGCACTGAATATTTATAAT-----AAAGGTTCCTAGTTGTTTTA-AAACCAAAACAAAAGTAAG-AGCTG-GTA----------------TAAGGACTGATTCATCC--------CAAA-----------------------AGGAAATTCTTGT-GGGAGTGGAAT-CTCTCTTTATCTTGTCCAGATTCCCGGATGGTCACTTCAAATGTCAATGTGATCTCTGCAACTTGGATACCTCTCCTTAAGCTAC-TAAAGGGATTCATGAACTCTGGCTTTTGGCCAAGGACATTGAAAAGACTAGTTGGAAAAAA-------CTACTATTCTGCGGTGATTTGTAGGCAGTGTGCTAGCAGCTTTCAAATAATGAGAATTATATACAGGATCCTAGCAACTTTCAAATAGTGATCAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111360823 454 - 210400635 TTCCAAGATTAAGGATCTGAAAGTACGTGGTTTAAAAGGAAGAAAGC-------TCTAATAAGCCAAGTTTGTTTTAATTTGTGGTACTTGTACATCTTGTACCTGAAGAGCACTGAATGTTTATTTTTTTTAAAAGGTTCCTAGTTGTTTTA-AAAACAAAACAAAGCCAAG-GGCTG-TTG----------------TAGTGGCTAATTCATCC--------CAAA-----------------------AGTAAATTCTTGT-GGGAGTGAA---CTCACTTTATCTTGTCCAGATTCCTGGATGGTCACTTCAAATGTCAATATGATCTCTGCAGCTTGGATATTTCTCCTTAAGCTAC-TAAAGGGATTCATGAACTCTGGCTTTTGGCCAAGGACATTGAAAAGACTAGTTGGAAAAAA---------ACTATTCTGCAGTGATTTATAGGCAGTGTGCTAGCAGCTTTCAAATAATGTGAATCATATACA-GATCCTAGCAACTTTCAAATAGTGAGGAA i calJac3.chr1 C 0 C 0 s mm10.chr19 38020586 472 - 61431566 TTCCTAGGTTAAGTGTTTACAAATATGTGGTTTTAAA-GAAGGCGGTTTTGCCTTCTGACAAGCCAAGTGTGTTTGAATTTGTGGTGCTTGTACATCTTGTACCTGAGAAGCACTGAATATTTGCAAT-----AAAG---------TGTTGTACGAAATAAAACAATAACAAGAAACCC-GCAAAATAAAACAAACCCCTATGGGAAGACTCCCCTGATCTGGGCAAG-----------------------ATGAAATTCTCTC-CAGAGTGGAA---------TAACTTGTCCAGGTACTGACAGGGGTGCTTC-ACCATCAGTGTGATCTTTGCAGCTGGAAAACATCTTCTTGGACTGCTTGATGGGGTTATTGAACTTTGGCCTTTCTCCAAAGACATTGGAGGAACCCATTGGAAAAAAACAAAACCCACTCTTCTGCAGTGATTTATAAACAGTCTGTTAGCAGCTTTCAAATAATGTGAATTATGTGCAAGACGCAAGCAGCTTTCAGA----GATCAA i mm10.chr19 C 0 I 454 s canFam3.chr1 35259467 430 - 122678785 TTCCAAGCTTAAGTAACTGCAAAAATATGGT-------------------CACTTCTGACAAGCCAAGTTTGTTTCAATTTGTAGTACTTGTACATCTTGTACCTGAGGAGTGCTGCATATTTGTAAC-----AAAGTGTTCTAGTTGGTTTA-GACCCAAAATAACACCAAG-AGAGGTGTA----------------AGAGGGCTGATTCCTCT--------CAAAGGGAAGAGTTCCATCCAGGCAACAGAAAGTTCTTGCGGGGCGTGGATGACTGAGTTGGTCTTGTCCAGATGCTTGC-TGGCAACTCCAAG-GTCAGTGTGC--------------AGATCCTTCTTAAAGGTAC-TA-------------------TCCTTCAGCCAAGGATACTGAGAAGACTAGTTGGAAAGAA-------CCACTACTTTATAGTGATTTATAGACGTTATGC-AGCAGCTTTCAAATA--GTGAATTATAGACAGAGCCCTAGCACCTCTCAAATCATGACCAA i canFam3.chr1 I 248 C 0 a score=22003.000000 s hg38.chr9_GL383541v1_alt 49570 7 + 171286 GTAAAAG s panTro4.chr9 68615304 7 + 137840987 GTCAAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64770974 7 + 135191526 GTGGAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57809823 7 - 122973662 GTGGAAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79739508 7 + 112192347 GTGGAAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80820324 7 + 112612857 GTGGAAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76869729 7 + 107442819 GTGGAAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81132941 7 + 108555830 GTGGAAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111361277 7 - 210400635 GTGGAAG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35259897 7 - 122678785 GTCTAAG i canFam3.chr1 C 0 C 0 e mm10.chr19 38021058 454 - 61431566 I a score=1697262.000000 s hg38.chr9_GL383541v1_alt 49577 479 + 171286 TTGTTGATGGTTCTGGTATAAACCATGAATCTCATCTCACCAAGACGAGTGCTGGGAAGGAAGGGGTTAG-AGTTTCTCTCCTGGCCTGG-CCACAAGCCCCTTCTCTCATCATTCCAGTCCTGATGGTGTCTTATCCATGTTT--GTCTCTTCTACATCTTACATTGGTCTTAACAGTGCCTGTGATTACTTCAACATGTAAACAGCCAAAGAGAACTCTGTCTGCAGCTGTTCAAAGCTCTGTCCTC-CAGCCAtgtttcttaaactcttggggtcatgagcccttttgagaatctgat------gaaagccatggattctctcc---ccagaaaaacagacatgtaatagtttgtgtatgatgtcatgaacctctggaatcaaatcctctaccccagggtaagaacccTGCCCTTAATAGCTTTAAATGAAAGGATGCTGTTTGACatccaggctccttct------aact-catgcttagccattcctaagtgtgg s panTro4.chr9 68615311 479 + 137840987 TTGTTGATGGTTCTGGTATAAACCATGAATCTCATCTCACCAAGATGAGTGCTGGGAAGGAAGGGGTTAG-AGTTTCTCTCCTGGCCTGG-CCACAAGCCTCTTCTCTCATCATTCCAGTCCTGATGGTGTCTTATCCATGTTT--GTCTCTTCTACATCTTACATTGATCTTAACAGTGCCTGTGATTACTTCAACATGTAAACAGCCAAAGAGAATTCTGTCTGCAGCTGTTCAAAGCTCTGTCCTC-CAGCCAtgtttcttaaactcctggggtcatgagcccttttgagaatctgat------gaaagccatggattctctcc---ccagaaaaacagacatgtaatagtttgtgtatgatgtcatgaacctctggaatcaaatcctcgaccccagggtaagaacccTGCCCTTAATAGCTTTAAATGAAAGGATGCTGTTTGACatccaggctccttct------aact-catgcttagccattcctaagtgtgg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64770981 479 + 135191526 TTGTTGATGGTTCTGGTATAAACCATGAATCTCATCTCACCAAGACGAGTGCTGGGAAGGAAGGGGTTAG-AGTTTCTCTCCTGGCCTGG-CCACAAGCCCCTTCTCTCATCATTCCAGTCCTGATGGTGTCTTATCCATGTTG--GTCTCTTCTACATCTTACATTGGTCTTAACAGTGCCTGTGATTACTTCAACATGTAAACAGCCAAAAAGATCTCTGTCTGCAGCTGTTCAAAGCTCTGTCCTG-CAGCCAtgtttcttaaactcttggggtcatgagcccttttgagaatctgat------gaaagccatggattctctcc---ccagaaaaacagacatgtaatagtttgtgtatgatgtcatgaacctctggaatcaaatcctcgaccccagggtaagaacccTGGCCTTAATAGCTTTAAATGAAAGGATGCTGTTTGACatccaggctccttct------aact-catgcttagccattcctaagtgtgg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57809830 476 - 122973662 TTGTTGATGGTTCTGGTATAAACCATGAATCTCATCTCACCAAAATGAGTGCTGGGAAGGAAGGGGTTAG-AGTTTCTCTCCTGGCCTGG-CCACAAGCCCCTTCTC---TCATTCCAGTCCTGATGGTGTCTTATCCATGTTG--GTCTCTTCTACATCTTACATTGGTCTTAACAGAGCCTATGATTACTTCAACATGTAAACAGCCAAAGAGAACTCTGTCTGCAGCTGTTCAAAGCTCTGTCCTC-CAGCTAtgtttcttaaactcttggggtcatgagcccttttgagaatctgat------gaaagccatggattctctcc---ccagaaaaacagacatgtaatagtttgtgtatgatgtcgtgaaactccggaatcaaatcctcgaccccagggtaaaaacccTGGCCTTAATAGCTTTAAGTGAAAGGATGCTGTTTGACATCCCGTCTCCTTCT------AACT-CAAGCCTAGCCATTCCTAAGTGTGG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79739515 480 + 112192347 TTGCTGATGATTCTGGTATAAACCATGAATCTCATCTCACCAAGACCAGTGCTGGGAAGGGAAGGGTTAG-AGTTTCTCTCCTGGCCTGG-CCACAAGCCTCTTCTCTCATCATTCCAGCCCTGATGGTATCTTATTCATGTTG--GTCTCTTCTACATTTTACATTGATCTTAACAGTGCCTGTGATTACTTCAACATGTAAACAGCCAAAGAGAACTCTGTCTGCAGCTGTTCAAAGCTCTGTCCTC-CAGCCAtgtttcttaaactcttggggtcatgaacccttttgagaatctgat------gaaagccatgaattctctcc---ccaggaaaacagacatgtaatagtttgtatatgatgtcatgaacgtctggaatcaaatcctcgaccccagggtaggaacccTGGCCTTAATAGCTTTAAATGAAAGGATGCCGTTTGACatccaggctccttct-----aaact-catgcttagccattcctaagtgtga i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80820331 480 + 112612857 TTGCTGATGATTCTGGTATAAACCATGAATCTCATCTCACCAAGACCAGTGCTGGGAAGGGAAGGGTTAG-AGTTTCTCTCCTGGCCTGG-CCACAAGCCTCTTCTCTCATCATTCCAGCCCTGATGGTATCTTATCCATGTTG--GTCTCTTCTACATTTTACATTGATCTTAACAGTGCCTGTGATTACTTCAACATGTAAACAGCCAAAGAGAACTCTGTCTGCAGCTGTTCAAAGCTCTGTCCTC-CAGCCAtgtttcttaaactcttggggtcatgaacccttttgagaatctgat------gaaagccatgaattctctcc---ccaggaaaacagacatgtaatagtttgtatatgatgtcatgaacgtctggaatcaaatcctcgaccccagggtaggaacccTGGCCTTAATAGCTTTAAATGAAAGGATGCCGTTTGACATCCAGGCTCCTTCT-----AAACT-CATGCTTAGCCATTCCTAAGTGTGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76869736 480 + 107442819 TTGCTGATGATTCTGGTATAAACCATGAATCTCATCTCACCAAGAccagtgctgggaagggaagggttAG-AGTTTCTCTCCTGGCCTGG-CCACAAGCCTCTTCTCTCATCATTCCAGCCCTGATGGTATCTTATCCATGTTG--GTCTCTTCTACATTTTACATTGATCTTAACAGTGCCTGTGATTACTTCAACATATAAACAGGCAAAGAGAACTCTGTCTGCAGCTGTTCAAAGCTCTGTCCTC-CAGCCATGTTTCTTAAACTCTTGGGGTCATGAACacttttgagaatctgat------gaaagccaTGAATTCTCTCC---CCAGGAAAACAGACATGTAATAGTTTGTATATGATGTCATGAACGTCTGGAATCAAATCCTCGACCCCAGGGTAAGAACCCCGGCCTTAATAGCTTTAAATGAAAGGATGCCGTTTGACATCCAGGCTCCTTCT-----AAACT-CATGCTTAGCCATTCCTAAGTGTGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81132948 480 + 108555830 TTGCTGATGATTCTGGTATAAACCATGAATCTCATCTCACCAAGACCAGTGCTGGGAAGGGAAGGGTTAG-AGTTTCTCTCCTGGCCTGG-CCACAAGCCTCTTCCCTCATCATTCCAGCCCTGATGGTATCTTATCCATGTTG--GTCTCTTCCACATTTTACATTGATCTTAACAGTGCCTGTGATTACTTCAACATGTAAACAGCCAAAGAGAACTCTGTCTGCAGCTGTTCAAAGCTCTGTCCTC-CAGCCAtgtttcttaaactcttggggtcatgaacccttttgagaatctgat------gaaagccatgaattctctcc---ccaggaaaacagacatgtaatagtttgtatatgatgtcatgaatgtctggaatcaaatccttgaccccagggtaagaacccTGGCCTTAATAGCTTTAAATGAAAGGATACCGTTTGACATCCAGGCTCCTTCT-----AAACT-CGTGCTTAGCCATTCCTAAGTGTGA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111361284 479 - 210400635 TGGTGGATGGTGCTGGTATAAACCATGAATCTCATCTCACCAAGACCAGTGCTGTGAAGGAAGGGATTAG-AATTTCTCTCCTGGCCTGG-CCACAAGCCTCTTCTCTCATCATTTCAGTCCTGATGGTGTCTTAGCCATGTTG--TTCTCTTCTACATCTTACATTGATCTTAGCAGTGCCTGTGATTACTTCAACATGTAAACAGCCAAAGAGAACTCTGTCTGCAGCTGTTCAAAGCTCTGTCCTCACAGCCATATttcttaaactcttggggtcatggg-acttttgagaatctgat------gaaaggcatagattctctcc---gcagaaaaacagacacttaatagtttttgtatgatgtcatgaacctctggaatcaaaccctagaccccagggtaagaacccTAGCCTTAGTAGCTTTAAAAGAAAGGATGCTGTTTggcatccaggctccttct------aact-catacttagccattcctaagtgtgt i calJac3.chr1 C 0 C 0 s mm10.chr19 38021512 463 - 61431566 TCATTTATGACTCTGGT-TTAGTTGTGACTCTTATCTCACCAAGATGA-CACTGGAAATGGAAGGGCTCT--GTTTTTCT-CTGGTCTGTCCCACAATCTCCATCTT---CCAGTCCAGTCCTG-CAGCATCTCATCTGTGTTG--TTCTGCTCTGTGCCCTACATTCAT-TGACTAGGGACCTTTACTACGTCAATGTG-----AGCC-AAGAGAACATTG--AGCAGACATTGAAAGCTCAGTCCTTATCGCTGTGTT------ACTCTTGTGATCTTAGGGACTTTGGAGAATCTGATTGAAAAGCAAGCAAATAGTGCTCCCCTA-CAAAGCATTCAGATGTCTGAAAGCTTATG---------GTGAACCTTGAAAATCAACACCTGGGTACCAGAGTAAGAAGTCTGGACTTATTACCCTTACAT-CAGTTATATCATTTGGAATGGAGGCTCCTTCTTATATAAACTGaaggcatgaccactccaaggtacag i mm10.chr19 I 454 I 2817 s canFam3.chr1 35259904 449 - 122678785 TCCTTTCTATTTCTGGTATAAAACATGAATCTCATCTCATGAGA--CAGTGCTGAAAGTGAGGGGGTTAAAAATCTCTTTCCTGGCCAGG-CCACCATCCCTGCGATTAATGGCTCTAGTTCTGTCGGTGTCTTACCCGTGTGGCACACACTTCTATATCTTCTATTGCTCTGGTTA-TGCCTATGATTAC------ATGTAAACAACAAAAGAGAA---TATCTGCAGTTGCTCAAAGCTTGGTCCTT---------------AAACTATTAGGGTGGTGGGCCCTTTAAAAATCCACAC------TGAAAGCGTGGATGCTCTCCTAGCGAAATATTCAGACATATATTGGTTTGTCTACA--GTCATGAACTTTTGAAGCCATCTCC-----CCCAAGGTACGAACCCTGGTCCCAACAGCTTTACATCAAAGGCTGTTGTTTgggatctagtgtctttct------ggtt-ca--ctttgcca-tcccatgtgtgg i canFam3.chr1 C 0 C 0 a score=554869.000000 s hg38.chr9_GL383541v1_alt 50056 163 + 171286 cccttatcctcatggtctcaggcagtggcaaattctccatctattatgaatgtatttcaggcaagaagatggaaagtaaagat-aatttttaagggcatttcctacaagatgcacttaaaactta--------tgcAACTTTTAAGGTTCCATGGGCATGTGACTGCTGCAG s panTro4.chr9 68615790 162 + 137840987 cccttatcctcatggtctcaggcagtggcaaattctccatctattatgaatgtatttcaggca-gaagatggaaggtaaagat-aatttttaagggcatttcctacaagatgcacataaaactta--------tgcAACTTTTAAGCTTCCATGGGCATGTGACTGCTGCAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64771460 163 + 135191526 cccttatcctcatggtctcaggcagtggcaaattctccatctattatgaatgtatttcaggcaggaagatggaaggtaaagat-agtttttaagggcatttcctacaagatgcacgtaaaactta--------tgcAACTTTTAAGGTTCCATGGGCATGTGACTGCTGCAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57810306 163 - 122973662 CCATTATCCTCATGGTCTCAGGCAGTGGCAAATTCTCCATCTCTTATGAATGTATTTCAGGCAGGAAGATGGAAGGTAAAGAT-AATTTTTAAGGGCATTTCCTACAAGATGCACATAAAACTTA--------TGCAACTTCTAAGGTTCCATGGGCATGTGACTGCTGCAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79739995 163 + 112192347 cccttatcctcatggtctcaggcagtggcaaattctccatctattatggatgtatttcaggcagaaagatggaaggtaaagat-aatttttaagggcatttcctacaagttgcacataaaactta--------tgcAACTTTTAAGGTTCCATGGGCATGTGACTGCTGCAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80820811 163 + 112612857 CCCTTATCCTCATGGTCTCAGGCAGTGGCAAATTCTCCATCTATTATGGATGTATTTCAGGCAGAAAGATGGAAGGTAAAGAT-AATTTTTAAGGGCATTTCCTACAAGTTGCACATAAAACTTA--------TGCAACTTTTAAGGTTCCATGGGCATGTGACTGCTGCAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76870216 163 + 107442819 CCCTTATCCTCATGGTCTCAGGCAGTGGCAAATTCTCCATCTATTATGGATGTATTTCAGGCAGAAAGATGGAaggtaaagat-aatttttaagggCATTTCCTACAAGTTGCACATAAAACTTA--------TGCAACTTTTAAGGTTCCATGGGCATGTGACTGCTGCAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81133428 163 + 108555830 CCCTTATCCTCATGGTCTCAGGCAGTGGCAAATTCTCCATCTATTATGGATGTATTTCAGGCAGAAAGATGGAAGGTAAAGAT-AATTTTTAAGGGCATTTCCTACAAGTTGCACATAAAACTTA--------TGCAACTTTTAAGGTTCCATGGGCATGTGACTGCTGCAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111361763 158 - 210400635 cctttatcctcatggtctcaggcagtggcaaattctccatctattatgaatgtacttcaggcaggaagctggaaggtaaagat-aatttttaagggcacttcctaaaagttgcacataaaactta--------tgcAACCTTTAAGTTTCCATGGGCATGTGACTGC----- i calJac3.chr1 C 0 C 0 s canFam3.chr1 35260353 160 - 122678785 ------ccctcatggtctcagac---ggctcatgttccacccattttaaatgcatttcaagcaggatagtgtgatgaaaagatcattttttaagggtgtctcccaaaagttgcaTGAAAAACTTACACTTAAGTGCAGGATT---GATCACACAGGCTTGAGACCAATATGG i canFam3.chr1 C 0 I 41 e mm10.chr19 38021975 2817 - 61431566 I a score=53737.000000 s hg38.chr9_GL383541v1_alt 50219 18 + 171286 TGAAAAGCAGACAGTTAA s panTro4.chr9 68615952 18 + 137840987 TGAAAAGCAGACAGTTAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64771623 18 + 135191526 TGAAAAGCAGATACTTAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57810469 18 - 122973662 TGAAAAGCAGATAGTTAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79740158 18 + 112192347 TGAAAAGCAGATAGTTAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80820974 18 + 112612857 TGAAAAGCAGATAGTTAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76870379 18 + 107442819 TGAAAAGCAGATAGTTAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81133591 18 + 108555830 TGAAAAGCAGATAGTTAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111361921 18 - 210400635 TTAAAAGCAGATAGTGAA i calJac3.chr1 C 0 C 0 e mm10.chr19 38021975 2817 - 61431566 I e canFam3.chr1 35260513 41 - 122678785 I a score=253732.000000 s hg38.chr9_GL383541v1_alt 50237 78 + 171286 Accattttgaaattcttaagagatgtatgtttgagtctgttctgtaactgaaatccaaggggacaatggggcatgtgc s panTro4.chr9 68615970 78 + 137840987 Accattttgaaattcttaagagatgtatgttcgagtctgttctgtaactgaaatccaaggggacaatggggcatgtgc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64771641 78 + 135191526 Accattttgaaattcttaagagatgtatgtttgagtctgttctgtaactgaaatccaaggggacaatggggcatgtgc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57810487 74 - 122973662 Accattttgaaattctta----atgtatgtttgagtctgttctgtaactgaaatccaaggggacaatggggcatgtgc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79740176 78 + 112192347 Accattttgaaattcttaataaatgtatgtttgagtcagttctgtaagtgaaatccaaggggacaatgcggcatgtac i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80820992 78 + 112612857 Accattttgaaattcttaataaatgtatgtttgagtcagttctgtaagtgaaatccaaggggacaatgcggcatgtac i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76870397 78 + 107442819 accattttgaaattcttaataaatgtatgtttgaGTCAGTTCTGTAAGTGAAATCCAAGGGGACAATGCGGCATGTAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81133609 78 + 108555830 Actgttttgaaattcttaataaatgtatgtttgagtcagttctgtaagtgaaatccaaggggacaatggggcatgtac i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111361939 78 - 210400635 gctattttgaaattcttaataaatgtgtgcttgggtctgttctgtaagtgaaatccaaggggataatggggcatgtgc i calJac3.chr1 C 0 C 0 s canFam3.chr1 35260554 67 - 122678785 accatcttaaaattcttaacaaattcctgttgga-----------aagtgaagtttaatggaacagtggagaatgtgc i canFam3.chr1 I 41 I 153 e mm10.chr19 38021975 2817 - 61431566 I a score=140782.000000 s hg38.chr9_GL383541v1_alt 50315 43 + 171286 AAACAAAGTGGGCAATACCCTGAGGGTAAGTGGCTCTCTCACC--- s panTro4.chr9 68616048 43 + 137840987 AAACAAAgtgggcaacaccctgagggtaagtggctctctcacc--- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64771719 43 + 135191526 AAACAAAGTGGGCAACACCCTGAGGGTAAGTGGCTCTCTCACC--- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57810561 43 - 122973662 AAACAAAGTGGGCAACACCCTGAGGGTAAGTGGCTGTTTCACC--- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79740254 43 + 112192347 AAACAAAGTGGGCAACACCCTGAGGGTAAGTGGCTCTCTCACC--- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80821070 43 + 112612857 AAACAAAGTGGGCAACACCCTGAGGGTAAGTGGCTCTCTCACC--- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76870475 43 + 107442819 AAACAAAGTGGGCAACACCCTGAGGGTAAGTGGCTCTCACACC--- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81133687 43 + 108555830 AAACAAAGTGGGCAACACCCTGAGGGTAAGTGGCTCTCACACC--- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111362017 41 - 210400635 AAACAAAgtgggcaacaccgtgagggtaagtgactct--cacc--- i calJac3.chr1 C 0 C 0 s canFam3.chr1 35260774 46 - 122678785 acacaaagcaggcaacacagtcggagcaagcaactcaccttcaata i canFam3.chr1 I 153 C 0 e mm10.chr19 38021975 2817 - 61431566 I a score=2349531.000000 s hg38.chr9_GL383541v1_alt 50358 685 + 171286 TGGATGCCTCACCTGTCCCAGTGTGcagaggctgcagtacccttaaaggtcact-gtctgcagggggttgggacagcaagacggtaggcagaggagatgcctggcttgctttcccagccgccaccaaggcactgaatacagagctggcatgtggcaggatg----gggaacccagaagaaaaccccagaggctgtgtttcactgagtcgccaaagtgaggg-actcctcttgcctgacaagtgtctgtgcgcttgaggga--------------gcaacataacatggcaaataaaaatcatcatgacaggtcaagaga--gagatcctggaagtaatgaaaaagctttatatttaatactgttaacagcacccttttcctactttttcagc-aaagagccctgcattttctttttgcatggatccct-tgaattatgtagcctgtcttgCTCTCTCTCACTGGCCAgccacaaagagctgcaaagaatgctg-aaaaatacagtgtttattct-agtggatgtgcccagccaa----aa-tcaggagttctgttaccatggaagatggggaaaa-ttgatattgaggttgatagctagcagtttctaccacaTAAGAAGA-----------------------------------------------------------------AACCACCcattattgaaagtgtttacaacgtttagctcactgaatcctaaaagcaataatactattagccctagtt----------tacagacaaaacaacagcac s panTro4.chr9 68616091 683 + 137840987 tggatgcctcacctgtcccagtgtgcagaggctgcagtacccttaaaggtcact-gtctgcagggggttgggacagcaagacagtaggcagaggagatgcctggcttgctttcccagccgccaccaaggcactgaatacagagctggcatgtggtaggatg----gggaacccagaagaaaaccccagaggctgtgttttactgagtcgccaaagtgaggg-actcctcttgcctgacaagtgtctgtgcgcttgaggga--------------gcaacataaaatggcaaataaaaatcatcatgacaggtcaagaga--gagatcctggaagaaatgaaaaagctttatatttaatactgttaacagcacccttttcctactttttcagc-aaagagccctgcattttctttttgcatggatccct-tgaattatgtagcctgtcttgCTCTCTCtcactggccagcctcaaagagctgcaaagaatgctg-aaaaata--gtgtttattct-agtggatgtgcccagccaa----aa-tcaggagttctgttaccatggaagatggggaaaa-ttgatactgaggttgatagctagcagtttctaccataTAAGAAGA-----------------------------------------------------------------AAccacccattattgaaagtgtttacaacgtttagctcactgaatcctaaaagcaataatactattagccctagtt----------tacagacaaaacaacagcac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64771762 685 + 135191526 TGGATGCCTCACCTGTCCCAGTGTGcagaggctgcaatacccttaaaggtcact-gtctgcagggggttggggcagcaagacagtaggaagaggagatgcctggcttgatttcccagccgccaccaaggcactgaatacagggctggcaagtggcaggatg----gagaacccagaagaaaatcccagaggctgtgtttcactgagtcgccaaagtgaggg-actcctcttgcctgacaagtatctgtgcgcttgaggga--------------gcaacataaaatggcaaataaaaatcatcatgacaggtcaagaga--gagatcctggaagaaatgaaaaagctttatatttaataccgttaacagcacccttttcctactttttcagc-aaagagccctgcattttctttttgcatggacccct-tgaattatgtagcctgtcttgCTCTCTCTCACTGGCCAgccacaaagagctgcaaagaatgctg-aaaaatacaatgtttatttt-ggtggatgtgcccagccaa----aa-tcaggagttctgttaccatggaagatggggaaaa-ttgatattgaggttgatagctagcagtttctaccataTAAGAAGA-----------------------------------------------------------------AACCACCCATTATTGAaagtgtttacaacatttacctcactgaatcctaaaagcaataataccattagccctagtt----------tacagaccaaacaacagcac i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57810604 685 - 122973662 TGGATGCCTCACCTGTCCCAGTGTGcagaggctgcagtacccttaaaggtcact-gtctgcagggggttggggcagcaagacagtaggaagaggagatacctggcttgatttcccagctgccaccaaggcactgaatacagggctggcatgtggcaggatg----gggaacccagaagaaaaccccagaggctgtgtttcactgagtcgccaaagtgaggg-actcctcttgcctgacaagtgtctgtgcatttgaggga--------------gcaacataaaatggcaaataaaaatcatcatgacaggtcaagaga--gagatcctggaagaaatgaaaaagctttatatttaataccgttaacagcacccttttcctactttttcatc-aaagagccctgcattttctttttgcatggacccct-tgaattatgtagcctgtcttgCTCTCTCTCACTGACCAgccacaaagagctgcaaagaatgctg-aaaaatacagtgtttattct-agtggatgtgcccagccaa----aa-tcaggagttctgtttccatggaagatggggaaaa-ttgatattgaggttgatagctagcagtttctATGATATAAGAAGA-----------------------------------------------------------------AAccacccattattgaaagtgtttacaacatttagctcactgaatcctaaaagcaataatactattagccctagtt----------tacagacaaaacaacagcac i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79740297 684 + 112192347 TGGACGCCTCACCTGTCCCAGTGTGcagaggctgcagtacccttaaaggccact-gtctgcagggggttggaacagcaagacagtaggaaaaggagacgcctggcttgatttcccagccaccaccagggcactgaatacagggctggcatgtggcaggatg----gggaacccagaagaa---cccagaggctgtgtttcactgagtcaccaaagtgaggg-actcctcttgcctgacaagtgtctgtgtgcttgaggga--------------gcaacataaaagggcaaatcaaaatcatcatgacaggtcaagaga--gagatcctggaagaaatgaaaaagttttacatttaataccgttaacagcacccttttcctgctttttcagc-aaagagccctgcattttcttcttgtatggacccct-tgaattatgtagcctgtcttgCTCTCtctcattggccagtcacaaagagctgcaaagaatgctggaaaaatacagtgtttattct-ggtggatgtgcccagccaa----aaatcaggagttctgttactatggaagatggggagaa-ttgatattgaggttgatagctagcagtttctaccaTGTAAGAAGA-----------------------------------------------------------------AACCACCCATTATTGAaagcgtttacaacatttagcttactgaatcctaaaagcaataatactatttgccctagtt----------cacagacaaaacgacagcac i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80821113 684 + 112612857 TGGACGCCTCACCTGTCCCAGTGTGcagaggctgcagtacccttaaaggccact-gtctgcagggggttggaacagcaagacagtaggaaaaggagatgcctggcttgatttcccagccaccaccagggcactgaatacagggctggcatgtggcaggatg----gggaacccagaagaa---cccagaggctgtgtttcactgagtcaccaaagtgaggg-actcctcttgcctgacaagtgtctgtgtgcttgaggga--------------gcaacataaaagggcaaatcaaaatcatcatgacaggtcaagaga--gagatcctggaagaaatgaaaaagttttacatttaataccgttaacagcacccttttcctgctttttcagc-aaagagccctgcattttcttcttgtatggacccct-tgaattatgtagcctgtcttgCTCTCtctcattggccagtcacaaagagctgcaaagaatgctggaaaaatacagtgtttattct-ggtggatgtgcccagccaa----aaatcaggagttctgttactatggaagatggggagaa-ttgatattgaggttgatagctagcagtttctaccaTGCAAGAAGA-----------------------------------------------------------------AACCACCCATTATTGAaagcgtttacaacatttagcttactgaatcctaaaagcaataatactatttgccctagtt----------cacagacaaaacgacagcac i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76870518 674 + 107442819 TGGACGCCTCACCTGTCCCAGTGTGCAGAGGCTGCGGTACCCTTAAAGGTCACT-ATCTGCAGGGGTTTGGGGCAGCAAGACAGTAGGAAAAGGAGACACCTGGCTTGATTTCCCAGCCACCACCAGGGCACTGAATACAGGGCTGGCATGTGGCAGGATG----GGGAACCCAGAAGAA--CCCCAGAGGCTGTGTTTCACTGAGTCACCAAAGTGAGGG-ACTCCTCTTGCCTGACAAGTGTCTGTGTGCTTGAGTGA--------------GCAACATAAAAGGGCAAATCAAAATCATCATGACAGGTCAAGAGA--GAGATcctggaagaaatgaaaaagttttacatttaataCTGTTAA------------CCTGCTTTTTCAGC-AAAGAGCTCTGCATTTTCTTCTTGTATGGACCCCT-TGAATTATGTAGCCTGTCTTGCTCTCTCTCATTGGCCAGTCACAAAGAGCTGCAAAGAATGCTGAAAAAATACAGTGTTTATTCT-GGTGGATGTGCCCAGCCAA----AAGTCAGGAGTTCTGTTACTATGGAAGATGGGGAGAATTTGATATTGAGGTTGATAGCTAGCAGTTTCTACCATATAAGAAGA-----------------------------------------------------------------AACCACTCATTATTGAAAGTGTTTACAACATTTAGCTTACTGAATCCTAAAAGCAATAATACTATTTGCCCTAGTT----------CACAGACAAAACGACAGCAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81133730 685 + 108555830 TGGACGCCTCACCTGTCCCAGTGTGcagaggctgcggtacccttaaaggtcact-atctgcagggggttggggcagcaagacagtaggaaaaggagacgcctggtttgatttcccagccaccaccagggcactgaatatagggctgacaagtggcaggatg----gggaacccagaagaa--ccccagaggctgtgtttcactgagtcaccaaagtgaggg-actcctcttgcctgacaagtgtctgtgtgcttgaggga--------------gcaacatcaaagggcaaataaaaatcatcatgactggtcaagaga--gagatcctggaagaaatgaaaaagctttacatttaataccgttaacagcacccttttcctgctttttcagc-aaagagcccgacattttcttcttgtatggacctct-tgaattatgtagcctgtcttgCTCTCtctcattggccagtcacaaagagctgcaaagaatgctgaaaaaatacagtgtttattct-ggtggatgtgcccagccaa----aaatcaggagttctgttaccatggaagatggggagaa-ttgatattgaggttgatagctagcagtttctaccataTAAGAAGA-----------------------------------------------------------------AACCACCCATTATTGAaagtgtttacaacatttagcttactgaatcctaaaagcaataatactatttgccctagtt----------tacagacaaaacaacagcac i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111362058 736 - 210400635 tggacgcctcacgtgtcccagtgtgcagaggctgcagcaccattaaaggttgct-gtccgcagggggctggggcagcaacacagtaggaagaggagatgccgggcttgacttcccgccttccaccagggcactgaatacggggctggcatgtagcagggca----gggaac------------tccagaggctgtgtttcactgagtcaccagaatgagcg-actccaattgcctgacaagtgtctgtgcacctaaggga--------------gcaacataaaatagcaaataaaaataatcacgacaggtcaagaga---agattctggaagaaacgaaaaagctttatatttaataccattaacagaaccgttttcctgctttttcagc-aaagagctctgcattttctttttgcacggaccctt-tgaattatgtagcctgtcttgCTCTCTCTCACTGGCCAgccacaaagagctgcaaagaacgctg-aaaaacagagtgtttattct-gttggatgtgcccagccaa----aaatcaggagttctgtttccatggaagttggggaaaa-tggatattgaggttcatagctagcagtttccaccataTAAGAAAACACTTTAAAAATAATT--ACCAAGTTCAAACTGCCTTGAAGAATGTAAAAAAAATAAttaccaaggaccacccattattgaaagtatttacaacgtttagctcactgaatcctaaaaggattaatactgttagccctggtt----------tgcagacaaaaaaccagcaa i calJac3.chr1 C 0 C 0 s mm10.chr19 38024792 621 - 61431566 tagctgcctggcacgttcctgttcagggatgtttcagtagccgcaaacatcactgggctgca-gggcttgaggatgcctgatggtagggtgagttggtgtc-agcctgatttcct-ctcaccactgagttacaaa-------------------caggatgacccaacaatcctgtaga------cagttgccttgatcta------caccaacctaagggaactttacctgcctgat--gcacatgtgtgcatgacggatgaaagggggatatatagcacaaa----cagagaggaaccatcatgacaaatcaagagagagagatcccagaagaaatgcaaatgccttataattagtaacttgagcaacatcttttccctactctttcaaagagggagctctgcgtttttcttttgaactgaatccc-caaattatacatcccatcctgCTGTGTCTTACAGGCCAgccacac--cgttacaaaggaagcag-agagaaatagtctttattttaggtACTGGTGGCCAC-----------ACAGGACTTCTGATGCTATGTAAAAT------AA-T-------------------------------------------------------------------------------------------------------------TACCAGGCATGGTTGACAGTGTTTATAACCTGTAGTTGATTTAATTCTACAATCAACAGTCTTACTGTCTccagttactcaagaggctgaggcaagagaattgcag i mm10.chr19 I 2817 I 260 s canFam3.chr1 35260820 691 - 122678785 tagacacctagactgtcctagcatgcggatgtggccatacccctggggtttgcccatctgcagtggattgaggcagtgggactggggaaagaggagctgcctggcttgactgcccagcccccggaggggcactgcacacagatctgatatttggcagaagg----ggATGCTCAGTAG----CCCCACTGGCTggcctc----------ctagtgcttgtg-tccccactca-ctctcgagtatctgtgtccccaaggga--------------gcacctgcaaacagcaaataaacatcatcgagacaggtcaagaga--gaaatcctggatgaaatgaaaaagctttatatttaatacctctaatagcaccttttccctgctttttcaat-aagaggctctgcattctcattttgtgccaaaccctacaaattatgtacttggtcctTTTGTGTCTCCCTGGCCAgccacaaacagctgcaaaagactttt-----------tttttttcctgggtggctatgcccagccagccccatgttgggatttctcttaccatggaagatggggacaa-tggaaatcaggatagataactagcagGGCCTAGCATATATGATGACAATTTAAAAATAATTTGCTCAAA-----------------------------------------GACTAAACGTTATTGAAAATGttcacagcttttagctcatttagtcctaaaaacagtagtactgttcgccccagct----------tacaga-aaaacagcagcac i canFam3.chr1 C 0 C 0 a score=593979.000000 s hg38.chr9_GL383541v1_alt 51043 186 + 171286 acagagatgaagtaacttgccccagagcacacatctagcaagcaatgaagccatggttcaaacctgggcag---tatggatttcaaatccaggaccctaacccctGCAACAG----CACCACCTTTGCAGCTCAGCCTGCA-AAACCCACAGCTGTGATTCGGCAGGGATGTTCTAGCC-TCTGAATCCCTTATA s panTro4.chr9 68616774 186 + 137840987 acagagatgaagtaacttgccccagagcacacatctagcaagcaatgaagccatggttcaaacctgggcag---tatggatttcaaatccagaaccctaacccctGCAACAG----CACCACCTTTGCAGCTCAGCCTGCA-AAACCCACATCTGTGATTCGGCAGGGATGTTCTAGCC-TCTGAATCCCTTATA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64772447 185 + 135191526 acagagatgaagtaactggccctagagcacacatctagcaagcaatgaagccagggttcaaacctaagcag---tgtggatttcaaatccaggaccctaacccctgc-acag----caccgcctttGCAGCTCAGCCTGCA-AAACCCACATCTGTGATTCAGCAGGAATGTTCTAGCC-TCTGAATCCCTTATA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57811289 184 - 122973662 acagagatgaagtaacttgccctagagcacacatctagcaagcaatgaagcca-ggttcaaacctgggcag---tgtggatttcaaatccaggaccctaacccctGC-ATAG----CACCGCCTTTGCAGCTCAGCTTGCA-AAACCCACATCTGTGATTCGGCAGGGATGTTCTAGCC-TCTGAATCCCTTATA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79740981 188 + 112192347 acagagacgaagtaccttgccctagagcacacatctagcaagcaacgaagccagggttcaaacctgggcaaacctgtggatttcagatccaggaccctaacccctgc-acag----cactgcctttGCAGCTCAGTCTGTA-AAACCCACATCTGTGATTCGGCAGGGATGTTCTAGCC-TCTGAATGCCTTATA i rheMac3.chr15 C 0 I 951 s macFas5.chr15 80821797 188 + 112612857 acagagacgaagtaccttgccctagagcacacatctagcaagcaacgaagccagggttcaaacctgggcaaacctgtggatttcagatccaggaccctaacccctgc-acag----cactgcctttGCAGCTCAGTCTGTA-AAACCCACATCTGTGATTCGGCAGGGATGTTCTAGCC-TCTGAATGCCTTATA i macFas5.chr15 C 0 I 326 s papAnu2.chr15 76871192 188 + 107442819 ACAgagatgaagtaacttgcccTAGAGCACACATCTAGCAAGCAATGAAGCCAGGGTTCAAACCTGGGCAAACCTGTGGATTTCAGATCCAGGACCCTAACCCCTGC-ACAG----CACTGCCTTTGCAGCTCAGCCTGTA-AAACCCACATCTGTGATTCGGCAGGGATGTTCTAGCC-TCTGAATGCCTTATA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81134415 184 + 108555830 acagagatgaagtaacttgccctggagcacacctctagcaagcaatgaagccagggttcaaacctgggcag---tgtggatttcaaatccaggaccctaacccctgc-acag----cactgcctttGCAGCTCAGCCTGTA-AAACCCACATCTGTGATTCGGCAGGGATGTTCTAGCC-TCTGAATGCCTTAT- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111362794 186 - 210400635 agagagatgaagtaacttgccctaaagcagacatctagcaagcaatgcagccagggttcaaacctgggcag---tgaggatttcaaatccaagactctaacccctgc-acag----cactgcctTTACAGCTCAGCCTGCA-AAACCCACATCTGTGATATGCCAGGGATGTTCTAGCCTTCTGAATGTCTTATA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35261511 178 - 122678785 --acatgtgaaatcacctggccccga--acacatctgtcaagggaggaagccaggactctaacctgggcag---tctggATTTTAAGTGCAAGGTC---ATCCCTGC-CTGGGGCTCAGCACCTTTGCAGCTCAACCTGCATAAACCTGCATCTGTGCCT---CAGAGATGTGCTGGTT-CTCTAAGGCAGCA-- i canFam3.chr1 C 0 C 0 e mm10.chr19 38025413 260 - 61431566 I a score=215714.000000 s hg38.chr9_GL383541v1_alt 51229 61 + 171286 AAAACATtggtcatgaaatcacctgcaccagaatcgctacaatatttgtttaaaatgcagt s panTro4.chr9 68616960 61 + 137840987 AAAACATtggtcatgaaatcacctgcaccagaatcgctacaatatttgtttaaaatgcagt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64772632 61 + 135191526 AAAACATtggtcatgaaatcacctgcaccaaaatcgctacaatgtttgtttaaaatgcagt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57811473 61 - 122973662 AAAACATtggtcatgaaatcacctgcaccagaattgctacaatatttgtttaaaatgcagt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79742120 61 + 112192347 AAAACATTGGTCATGAAATTACCTGCACCAGAATCGCTACAATATAtgtttaaaatgcagt i rheMac3.chr15 I 951 C 0 s macFas5.chr15 80822311 61 + 112612857 AAAACATtggtcatgaaattacctgcaccagaatcgctacaatatatgtttaaaatgcagt i macFas5.chr15 I 326 C 0 s papAnu2.chr15 76871380 61 + 107442819 GAAACATTGGTCATGAAATTACCTGCACCAGAATCGCtacaatatatgtttaaaatgcagt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81134599 61 + 108555830 AAAACATtggtcatgaaatcacctgcaccagaatcgctacaatatatgtttaaaatgcagt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111362980 61 - 210400635 AAAACATtggtcataaaatcacctgcaccagaatcgctacaatatttgtttaaaatgcagt i calJac3.chr1 C 0 C 0 s canFam3.chr1 35261689 61 - 122678785 AAAAGTTAGGTCACAGGTTTACCTGTTTGGGAATTGCTACAggatttgtttgaaaggtagc i canFam3.chr1 C 0 C 0 e mm10.chr19 38025413 260 - 61431566 I a score=261159.000000 s hg38.chr9_GL383541v1_alt 51290 67 + 171286 ttcccaggctttaagccaggctaccagatcagaatatctgcaggtggattataa-------ggatcttcatttt s panTro4.chr9 68617021 67 + 137840987 ttcctaggctttaagccaggctaccagatcagaatatctgcaggtggattataa-------ggatcttcatttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64772693 67 + 135191526 ttcctaggctttaagctaggctactggatcagaatatctgcaggtggattataa-------gaatcttcatttt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57811534 67 - 122973662 ttcctaggctctaagccaggctaccagatcagaatatctgcgggtggattataa-------ggatcttcatttt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79742181 67 + 112192347 ttcctaagctctaagccaggctaccggatcagaatatctgcaggtggattataa-------ggatcttcatttt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80822372 67 + 112612857 ttcctaagctctaagccaggctaccggatcagaatatctgcaggtggattataa-------ggatcttcatttt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76871441 67 + 107442819 ttcctAGGCTCTAAGCCAGGCTACCGGATCAGAATATCTGCAGGTGGATTATAA-------GGATCTTCATTTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81134660 67 + 108555830 ttcctaggctctaagccaggctaccagatcagaatatctgcaggtggattataa-------ggatcttcatttt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111363041 67 - 210400635 ttcctgggctctaagccagaccaccagatcagaatatctgcgggtggattataa-------gaatcttcatttt i calJac3.chr1 C 0 M 1850 s mm10.chr19 38025673 73 - 61431566 TTCCCAGCCCCCAAGTCAAAC-AGTGAGTTAAAATGTATATGGGCAGATCACCAGTCCCTGGAATTTTTATTTT i mm10.chr19 I 260 C 0 s canFam3.chr1 35261750 67 - 122678785 ttccaaagctctaagccaacccactgaatcagaatatccgagagtgaatcacaa-------gaatctttgtctt i canFam3.chr1 C 0 C 0 a score=532386.000000 s hg38.chr9_GL383541v1_alt 51357 180 + 171286 aaacaaactccctctggtgatttttagacacTTTAGGAAATATTACTTAAAAGTTTTAAGGTACAATAAACTTCCTGGGTTGAGGATTGTGTGGgaagccgtgaggaaacagacatttatatta--gcacattgatggcaagaaagcaaca---gtttacaacccaatgagggggaacgtggcaa s panTro4.chr9 68617088 180 + 137840987 aaacaaactccctctggtgatttttagacacTTTAGGAAATGTTACTTAAAAGTTTTAAGGTACAGTAAACTTCCTGGGTTGAGGattgtgtgggaagccgtgaggaaatagacatttatatta--gcacattgatggcaagaaagcaaca---gtttacaacccaatgagggggaacgtggcaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64772760 180 + 135191526 aaacaaactccgtctggtgatttttagacacTTTAGGAAATATTACTTAAAAGTTTTAAGGTACAATAAACTTCCTGGGTTGAAGATTGTGTGGgaagccgtgaggaaatagacattcatatta--atacattgatggcaagaaagcaaca---gtttacaacccaatgaggcggagcgtggcaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57811601 180 - 122973662 aaacaaactccctctggtgatttttagacacTTTAGGAAATATTACTTAAAAGTTTTAAGGTACAATAAACTTCCTGGGTTGAGGattgtgtgggaagctgtgaggaaacagacattcatatta--atacatcgacggcaagaaagcaaca---gtttgcaacccaatgagggggaacgtggcaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79742248 180 + 112192347 aaacaaactccacctggtgattcttagacacTTTAGGAAATGTTACTTAAAAGTTTTAAGGTACAATAAACTTCCTGGGTTGAGGATTGTGtggggagccgtgaggaaatagacattcatatta--atacatcgatggcaagaaagcaaca---gtttacagcccaatgagtgggaacatggcaa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80822439 180 + 112612857 aaacaaacttcacctggtgattcttagacacTTTAGGAAATGTTACTTAAAAGTTTTAAGGTACAATAAACTTCCTGGGTTGAGGATTGTGTGGgaagccgtgaggaaatagatattcatatta--atacatcgatggcaagaaagcaaca---gtttacagcccaatgagggggaacatggcaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76871508 180 + 107442819 AAACAAACGCCACCTGGTGATTCTTAGACACTTTAGGAAATGTTACTTAAAAGTTTTAAGGTACAATAAACTTCCTGGGTTGAGGATTGTGTGGGAAGCCGTGAGGAAATAGACATTCATATTA--ATACATCGATGGCAAGAAAGCAACA---GTTTACAGCCCAATGAGGGGGAACGTGGCAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81134727 180 + 108555830 aaacaaactccacctggtgattcttagacacTTTAGGAAATGTTACTTAAAAGTTTTAAGGTACAATAAACTTCCTGGGTTGAGGATTGTGTGGgaagccgtgagaaaatagacattcatatta--atacatcgatggcaagaaagcaaca---gtttacagcccaatgaggggcaatgtggcaa i chlSab2.chr12 C 0 C 0 s mm10.chr19 38025746 160 - 61431566 TAACAAACCCCCAAAGGTGATTTTTATA---------AAATATTGCTGTAGAGCATGAGGATACAATGAAGTTCCTGGGATGAGTGTTATCTTCAAGGTTGTAAAGAA---------CGTACTG--GAGC-----TGGAGAAACAGTAACACATGCTCATAGCCTGCTGGTGGCCAACAGTGCAA i mm10.chr19 C 0 I 128 s canFam3.chr1 35261817 182 - 122678785 acacaaattgcttcaggtgattctTAGGAACTTTAAGAAATGTTGCTCAGAAGTTTTGGAGTACCATTAACTCCCTGAGATGAGTGTTGTGTGACaagttgcaaggaaggagatactcataatatgatgccttggttgcgggaaggcacaa---ggttacagcccagtgaaggggaatttgacag i canFam3.chr1 C 0 C 0 e calJac3.chr1 111363108 1850 - 210400635 M a score=822362.000000 s hg38.chr9_GL383541v1_alt 51537 332 + 171286 tgtctaccaagattacagatgcattggccctgggatgcagcagtcccacttccagaaatctagcctacaactacaattacatgtgtatgaa-------atgtacaaagttactcatagtggcattattgacaccagcaaaatattgtaagcaccccaagtgtctagcaaaggagaccaggatgagcccatccatgtagtggcacactgtgctgc-tgtctggaagaatgcaggcaatcactaagtactgatggagggaaatcttcagcacatgttgcaaaggg-aaaatataagatatg-taacagtgtCCCT-GGACATGCAGGCAAGAGAATTCCCTCTCA s panTro4.chr9 68617268 332 + 137840987 tgtctaccaagattacagatgcattggccctgggatgcagcagtcccacttccagaaatctagcctacaactacaattacatgtgtatgaa-------atgtacaaagttactcatagtggcattattgacaccagcaaaatattgtaagcaccccaagtgtccagcaaaggagaccaggatgagcccatccatgtagtggcacactgtgctgc-tgtctggaagaatgcaggcaatcactaagtactgatggagggaaatcttcagcacatgttgcaaaggg-aaaatataagatatg-taacagtgtCCCT-GGACATGCAGGCAAGAGAATTCCCTCTCA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64772940 332 + 135191526 tatctaccaagattacagatgcactggccctgggatgcagcagtcccacttccagaaatccagcctacaactacacttacatgtgtatgaa-------atgtacaaagttactcatagtggcattattgacaccagcaaaatattgtaagcaccccaagtgtccagcaaaggagaccaggatgagtccatccatgcagtggcacactgtgctgc-TGTCTGGAAGAATGCAGGCGATCACTAAGTACTGATGGAGGGAAATCTTTAGCACATGTTGCAAAGGG-AAAATACAAGATATG-TAACAGTGTCCCT-GGACATGCAGGCAAGAGAATCCCCTCTCA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57811781 334 - 122973662 tatctaccaagattacagatgcattggccctgggatgcagcagtcccacttccagaaatctagcctacaactacacatacatttgtatgaa-------atgtacagagttactcatagtcgcattattgacaccagcaaaatattgtaagcaccccaggtgtccagcaaaggagaccaggatgagtccatccatgcagtggcacactgtgctgc-tgtctggaagaatgcaggtgatcactaagtactgatggagggaaatcttcagcacatgttgcaaagggaaaaaaatgagatatgttaacagtgtCCCT-GGACATGCAGGCAAGAACATCCCCTCTCA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79742428 335 + 112192347 tatctaccaagattacagatgcattggtcct-ggatgcagcagtcccacttccagaaatttagcctgcaactacacctataagtgtatgaaatgacacatgttcaaggtta---ataatggcattattgacaccagcaaaatattttaagcaccccaaatgtccagcaaaggagaccaggatgagtccatccatgcagtggcacac--tgctac-cgtctggaagaaagcaggcgctcactaagtactgatggagggaaatcttcagcacatgttgcaaagggaaaaaaagaagatatg-taacagtCTCCCCAGGACATGCAGGCAAGAGAATCCCCTCTCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80822619 335 + 112612857 tatctaccaagattacagatgcattggtcct-ggatgcagcagtcccacttccagaaatttagcctgcaactacacctataagtgtatgaaatgacacatgttcaaggtta---ataatggcattattgacaccagcaaaatattttaagcaccccaaatgtccagcaaaggagaccaggatgagtccatccatgcagtggcacac--tgctac-cgtctggaagaaagcaggcgctcactaagtactgatggagggaaatcttcagcacatgttgcaaagggaaaaaaagaagatatg-taacagtCTCCCCAGGACATGCAGGCAAGAGAATCCCCTCTCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76871688 335 + 107442819 TAGCTACCAAGATTACAGATACATTGGTCCT-GGATGCAGCAGTCCCACTTCCAGAAATTTAGCCTACAACTACACCTACAAGTGTATGAAATGACACATGTTCAAGGTTA---ATAATGGCATTATTGAcaccagaaaaatattttaagcacctCAAATGTCCAGCAAAGGAGACCAGGATGAGTCCATCCATGCAGTGGCACAC--TGCTAC-CGTCTGGAAGAAAGCAGGCGCTCACTAAGTACTGATGGAGGGAAATCTTCAGCACATgttgcaaagggaaaaaaagaagatatg-taACAGTCTCCCCAGGACATGCAGGCAAGAGAATCCCCTCTCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81134907 335 + 108555830 tatctaccaagattacagatgcattggtcct-cgatgcagcagtcccacttccagaaatctagcctacaactacacctacaagtgtatgaaatgacacatgttcaaggtta---ataatggcattattgacaccagcaaaatattttaagcaccccaaatgtccagcaaaggagaccaggatgagtccatccatgcagtggcgcac--tgctac-cgtctggaagaaagcaggcgctcgctcagtactgatggagggaaatcttcagcacatgttgcaaagggaaaaaaagaagatatg-taacagtCTCCCCAGGACATGCAGGCAAGAGAATCCCCTGTCA i chlSab2.chr12 C 0 C 0 s canFam3.chr1 35261999 306 - 122678785 tatctatcaggattacagatgcattggccctgtgatgcagagatc------tcggaaatttatcctacagatagacctgcacatgggtgaaatggcacacataccagatcattcacagcggcattgttgatactagcaaaatgttggaagtgacccaggcatccagctgtgggg----------------------aatggcacactatgctgtgtgtccagaagaacaaagcagatcacta-------atgtagagaaatctccaggacatgttgggaggtg-aagaaagcacagcgc-taaccatgtgcatagtaGAGGCAGGCGTGAGAAAGACCTCTCA i canFam3.chr1 C 0 C 0 e mm10.chr19 38025906 128 - 61431566 I e calJac3.chr1 111363108 1850 - 210400635 M a score=381539.000000 s hg38.chr9_GL383541v1_alt 51869 130 + 171286 CCAGGAACAGTGTGCTCCCGAAAATGTCCAGTGACGTTACAAAGGCTGAGTCTCAGGGCTGCGATGGCAGGTGGGGGCAGTTGAGTCAGCTCTGGCCCCTTTTCCTAAGCCCTGAGCTGTTGAAGGCTCC s panTro4.chr9 68617600 130 + 137840987 CCAGGAACAGTGTGCTCCCCAAAATGCCCAGTGACATTACAAAGGCTGAGTCTCAGGGCTGTGATGGCAGGTGGGGGCAGTTGAGTCAGCTCTGGCCCCTTTTCCTAAGCCCTGAGCTGTTGAAGGCTCC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64773272 130 + 135191526 CCAGGAACAGTGTGCTCCCCAAAATGCCCAGTGACGTTACAAAGGCTGAGTCTCAGGGCTGCAATGGCAGGTGGGGGCAGTTGAGTCAGCTCTGGCCCCTTTTCCTAAGCCCTGAGTTGTTGAAAGCTCC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57812115 130 - 122973662 CCAGGAACAGTGTGCTCCCCAAAATGCCCAGTGACGTTACACAGGCTGAGTCTCAGGGCTGCGATGGCAGGTGGGGGCAGTTGAGTCAGCTCTGGCCCCTTTTCCTAAGCCCTGAGTTGTTGAAGGCTCC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79742763 130 + 112192347 CCAGGAACAGTGTGCTCCCCAAAATGCCCAGTGACATTACAAAGGCTGAGTCTCAGGGCTGTGATGGCAGGTAGGGGCAGTTGAGTCAGCTCTGGCCCCTTTTCCTAAGCTGTGGGTTGTTGAAGGCTCC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80822954 130 + 112612857 CCAGGAACAGTGTGCTCCCCAAAATGCCCAGTGACATTACAAAGGCTGAGTCTCAGGGCTGTGATGGCAGGTAGGGGCAGTTGAGTCAGCTCTGGCCCCTTTTCCTAAGCTGTGGGTTGTTGAAGGCTCC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76872023 130 + 107442819 CCAGGAACAGTGTGCTCCCCAAAATGCCCAGTGACATTACAAAGGCTGAGTCTCAGGGCTGTGATGGCAGGTAGGGGCAGTTGAGTCAGCTCTGGCCCCTTTTCCTAAGCTGTGGGTTGTTGAAGGCTCC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81135242 130 + 108555830 CCAGGGACAGTGTGCTCCCCAAAATGCCCAGTGACATTACAAAGGCTGAGTCTCAGGGCTGTGATGGCAGGTAGGGGCAGTTGAGTCAGCTCTGGCCCCTTTTCCTAAGCTGTGGGTTGTTGAAGGCTCC i chlSab2.chr12 C 0 C 0 s mm10.chr19 38026034 108 - 61431566 CTAGAGACAACATGCTGCCCTTGATCTCCACTGA-----------------CTTGGGGCTG-GATATCAGCT-GGGGCAGCAGAGGCAGCCCTGG-CCCTCTTTGGAAACCCTGTGCTGGGGAAGGCT-- i mm10.chr19 I 128 C 0 s canFam3.chr1 35262305 111 - 122678785 CTAGGAATAGCGTGTTCCCCTGAACTTGTACT-------------------CTCAGGGCTGGCCTGGTGGGAGGGAGCAGCAGAGTCAGCTCTGGCTCTTTGCCATGCACCCTAGGTTGTTGCAGACTCC i canFam3.chr1 C 0 C 0 e calJac3.chr1 111363108 1850 - 210400635 M a score=159518.000000 s hg38.chr9_GL383541v1_alt 51999 80 + 171286 CTGATAGCTGTCTTTAAAATTAATGGAGGggctgggtgtggtggctcacgcctgtaatcccagcactttgggaggctgag s panTro4.chr9 68617730 80 + 137840987 CTGATAGCTGTCTTTAAAATTAATGGAGGggctgggtgtggtggctcacgcctgtaatcccagcactttgggaggctgag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64773402 80 + 135191526 CTGACAGCTGTCTTTAAAATTAATGGAGGggctgggtgtggtggctcacgcctgtaatcccagcacttttggaggctgag i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57812245 80 - 122973662 CTGACAGCTGTCTTTAAAATTAATGGAGGggctgggtatggtgcctcatgcctgtaatcccagcactttgggaggctgag i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79742893 67 + 112192347 CTGACAGCTGTCTTTAAAATTAATGGAGGGGCCAGGTGTG-------------gtaatcccagcactttgggaggctggg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80823084 67 + 112612857 CTGACAGCTGTCTTTAAAATTAATGGAGGGGCCAGGTGTG-------------gtaatcccagcactttgggaggctgag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76872153 67 + 107442819 CTGACAGCTGTCTTTAAAATTAAtggaggggccaggtgtg-------------gtaatctcagcactttgggaggctgag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81135372 67 + 108555830 CTGACAGCTGTCTTTAAAATTAATGGAGGGGCCAGGTGTG-------------gtaatcccagcactttgggaggctgag i chlSab2.chr12 C 0 C 0 s mm10.chr19 38026142 41 - 61431566 ------GTGATCCTGATCACCAAT---------------------------------TCCAATTGCCCTGCAAGGCTGAG i mm10.chr19 C 0 I 333 e canFam3.chr1 35262416 0 - 122678785 C e calJac3.chr1 111363108 1850 - 210400635 M a score=58777.000000 s hg38.chr9_GL383541v1_alt 52079 27 + 171286 gcgggcagatcacgaggtcag--------gagttc s panTro4.chr9 68617810 27 + 137840987 gcgggcagatcacgaggtcag--------gagttc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64773482 27 + 135191526 gcgggcagatcacgagatcag--------gagttc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57812325 27 - 122973662 gtgggcagatcacgaggtcag--------gagttc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79742960 35 + 112192347 gtgggctgatcatgagatcaggagttcaagagttc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80823151 35 + 112612857 gtgggcagatcacgaggtcaggagttcaagagttc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76872220 35 + 107442819 atgggcagatcacgaggtcaggagttcaagagttc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81135439 27 + 108555830 gtgggcagatcacgaggtcag--------gagttc i chlSab2.chr12 C 0 C 0 e mm10.chr19 38026183 333 - 61431566 I e canFam3.chr1 35262416 0 - 122678785 C e calJac3.chr1 111363108 1850 - 210400635 M a score=92240.000000 s hg38.chr9_GL383541v1_alt 52106 38 + 171286 aagaccagactagccaacatagcaaaaccccgtcttta s panTro4.chr9 68617837 38 + 137840987 aagaccagactagccaacatagcaaaaccccgtcttta i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64773509 38 + 135191526 aagaccagactagccaacatagcaaaaccccatcttta i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57812352 38 - 122973662 aagaccagactagccaacagagcaaaaccccatcttta i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79742995 38 + 112192347 aagaccagcctagccaacatagcaaaaccccatctcta i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80823186 38 + 112612857 aagaccagcctagccaacatagcaaaaccccatctcta i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76872255 38 + 107442819 aagaccagcctagccaacatagcaaaaccccatctcta i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81135466 38 + 108555830 aagaccagcctagccaacatagcaaaaccccatctcta i chlSab2.chr12 C 0 C 0 s canFam3.chr1 35262416 16 - 122678785 AAGACCG----------------------CTGTCTTCA i canFam3.chr1 C 0 C 0 e mm10.chr19 38026183 333 - 61431566 I e calJac3.chr1 111363108 1850 - 210400635 M a score=417825.000000 s hg38.chr9_GL383541v1_alt 52144 176 + 171286 ctaaaaatacaaaatttagccgagtgtggtggcaggcacctgtagtttcagctactcaggagactgaggcaggagaattgctggaataggggtggcagaggttgcagtgagccaaggtcacactagtgcacttcaacctgggcaatagcatgagactctgcctcaaaaa----aaaaaaa s panTro4.chr9 68617875 176 + 137840987 ctaaaaatacaaaatttagtcgagtgtggtggcaggcacctgtagtctcagctactcaggagactgaggcaggagaattgctggaataggggtggcagaggttgcagtgagccaaggtcacactagtgcacttcaacctgggcaatagcatgagactctgcctcaaaaa----aaaaaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64773547 176 + 135191526 ctaaaaatacaaaacttagccgggtgtggtggtgggcgcctgtagtctcagctactcaggagactgaggcaggagaattgcttgaacaggggtggcagaggttgcagtgagccaagatcacactagtgcacttcaacctgggcaatagcatgagactctgcctcaaaaa----aaaaaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57812390 176 - 122973662 ctaaaaatataaaacttagccgggtgtggtggtgggcgcctgtagtcttagctactcaggagactgaggcaggagaattgcttgaacaggggtggcagaggttgcagtgagccaagatcacactagtgcacttcaacctgggcaatagcatgagactctgcctcaaaaa----aaaaaaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79743033 180 + 112192347 ctaaaaatacaaaaattagctggatgtggtggcgggtacctgtagtctcagctaatcaggagactgaggcaggagtattgcttaaacaggggcggcagaggttgcagtgagccgaggtcacaccagtgcacttcaacctgggcaacggcatgagactctgcctcaaaaaaaacaaacaaa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80823224 176 + 112612857 ctaaaaatacaaaaattagctggatgtggtggcgggtacctgtagtctcagctaatcaggagactgaggcaggagtattgcttaaacaggggcggcagaggttgcagtgagccgaggtcacaccagtgcacttcaacctgggcaacagcatgagactctgcctcaaaaa----aaaaaaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76872293 176 + 107442819 ctaaaaatacaaaaattagctggatgtggtggcgggtacctgtagtctcagctaatcaggagactgaggcaagagaattgcttaaacagGGGcgtcaaaggttgcagtgagccgagatcacaccagtgcacttcaacctgggcaacagcatgagactctgcctcaaaaa----aaaaaaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81135504 176 + 108555830 ctaaaaatacaaaaattagctggatgtggtggcgggtacctgtagtctcagctaatcaggagactgaggcaggagaattgcttaaacaggggcggcagaggttgcagtgagctgagatcacaccagtgcacttcaacctgggcaacagcatgagactctgcctcaaaaa----aaaaaaa i chlSab2.chr12 C 0 C 0 e mm10.chr19 38026183 333 - 61431566 I e canFam3.chr1 35262432 0 - 122678785 C e calJac3.chr1 111363108 1850 - 210400635 M a score=116808.000000 s hg38.chr9_GL383541v1_alt 52320 49 + 171286 aaa--------------TTAATGGCGGTACTTAGGGCCTCTCTTCCCTAGGCAATGGATCCTG s panTro4.chr9 68618051 52 + 137840987 aaa-----------aaaTTAATGGCGGTACTTAGGGCCTCTCTTCCCTAGGCAATGGATCCTG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64773723 54 + 135191526 aaa---------aaaaaTTAATGGCGGTACTTATGGCCTCTCTTCCCTAGGCAATGGATCCTG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57812566 63 - 122973662 agaaaaagaaaaaaaaaaTAATGGCGATACTTAGGGCCTTTCTTCCCTAGGCAATGGATCCTG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79743213 55 + 112192347 caa--------aaaaaaTTAATGGCGGTACTTAGGGCCTCTCTTCCCTAGGCAATGGATCCTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80823400 55 + 112612857 aaa--------aaaaaaTTAATGGCGGTACTTAGGGCCTCTCTTCCCTAGGCAATGGATCCTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76872469 51 + 107442819 aaa--------aaaa----aatggcggTACTTAGGGCCTCTCTTCCCTAGGCAATGGATCCTG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81135680 48 + 108555830 aaa--------a-------aaTTGCGGTACTTAGGGCCTCTCTTCCCTAGGCAATGGATCCTG i chlSab2.chr12 C 0 C 0 s canFam3.chr1 35262432 48 - 122678785 --------------GAATTAATGGAGGTACTTAGCGCCCCT-GCACCTCGGCTTTGGGTCCTA i canFam3.chr1 C 0 C 0 e mm10.chr19 38026183 333 - 61431566 I e calJac3.chr1 111363108 1850 - 210400635 M a score=1297216.000000 s hg38.chr9_GL383541v1_alt 52369 425 + 171286 TTCACCAATTTGGTGGCAAAGAAAAACGT-CTTATTCCATCCCTTTAGAGATGGTAAACCTAGATTTGGAGT---GTAGAATGATTCTGAGATGGCACTGACTTCTTCATCCTTTTCAATTGGAAAACATGCTGCCTCAGTCCTAGACTGGATTGTTTTGGGGAACAAACTTT----------TTTTAAAGTG-TTTTGGAGGATTG-GTGCTCTTCTTCCGACTCTGTATGATGCCTCTCTCCTCTTGAATTTGGATCACT-----------TGCTTGTGGTAGAATGTTTTATTTTGTACTCTAGAGAATGCTT-------ATACTCTTGAGTGGAAACATGAGGGAG--TTTCAATAACAGATTGTTCTCTAAAAATAGTCCCTTCAGCCTTTCCTATTAAACTAGGTGTCAAGGCTCAGGGTTAGCAAAGCAGTTTGTTAGAGCAAAAGCAGCACAG s panTro4.chr9 68618103 425 + 137840987 TTCACCAATTTGGTGGCAAAGAAAAACGT-CTTATTCCATCCCTTTAGAGATGGTAAACCTAGATTTGGAGT---GTAGAATGATTCTGAGATGGCACTGACTTCTTCATCCTTTTCAATTGGAAAACATGCTGCCTCAGTCCTAGACTGGATTGTTTTGGGGAACAAACTTT----------TTTTTAAGTG-TTTTGGAGGATTG-GTGCTCTTCTTCCGACTCTGTATGATGCCTCTCTCCTCTTGAATTTGGATCACT-----------TGCTTGTGGTAGAATGTTTTATTTTGTACTCTAGAGAATGCTT-------ATACTCTTGAGTGGAAACATGAGGGAG--TTTCAATATCAGATTGTTCTCTAAAAATAGTCCCTTCAGCCTTTCCTATTAAACTAGGTGTCAAGGCTCAGGGTTAGCAAAGCAGTTTGTTAGAGCAAAAGCAGCACAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64773777 428 + 135191526 TTCACCAATTTTGTGGCAAAGAAAAAAGT-CTTATTCCATCCCTTTAGAGATGGTAAACCTAGATTTGGAGTGTAGTAGAATGATTCTGAGATGACACTGCCTTCTTCATCCTTTTCAATTGGAAAATATGCTGCCTCAGTCCTAGACTGGATTGTTTTGGGGAACAAACTTT----------TTTAAAATGC-TTTTGGAGGATTG-GTGCTCTTCTTCCAGCTCTGTATGATGCCTCTCTCCTCTTGAATTTGGATCACT-----------TGCTTGTGGTAGAATGTTTTATTTTGTACTCTAGAGAATGCTT-------ATACTCTTGAGTGGAAACATGAGGGAG--TTTCAATAACAGATTGTTCTCTAAAAATAGTCCCTTCAGCCTTTCCTATTAAACTAGGTGTCAAGGCTCAGGGTTAGCAAAGCAGTCTGTTAGAGCAAAAGCAGCACAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57812629 426 - 122973662 TTCACCAATTTTGTGGCAAAGAAAAACGT-CTTATTCCATCCCTTTAGAGATGGTAAACCTAGATTTGGAGT---GTAGAATGATTCTGAGATGGCACTGACTTCTTCATCCTTTTCAATTGGAAAATATGCTGCCCCAGTCCTAGACTGGATTGTTTTGGGGAACAAACTTT----------TTTTTAAGTGCTTTTGGAGGATTG-GTGCTCTTCTTCCAGCTCTGTATGATGCCTCTCTCCTCTTGAATTTGGATCACT-----------TGCTTGTGGTAGAATGTTTTATTTTGTACTCTAGAGAATGCTT-------ATACTCTTGAGTGGAAACATGAGGGAG--TTTCAATAACAGATTGTTCTCTAAAAATAGTCCCTTCAGCCTTTCCTATTAAACTAGGTGTCAAGGCTCAGGGTTAGCAAAGCAGTTTGTTAGAGCAAAAGCAGCACAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79743268 422 + 112192347 TTCACCAATTTTGTGGCAAAGAAAAACGT-CTTATTCCATCCCTTTAGAGATGGTAAACCTAGATTTGGAGT---GTATAATGATTCTGAGATGGCATTGACTTCTTCATCCTTTTCAATTGGAAAAGAGGCTGCCTCAGTCCTAGACTGGATTGTTTT-GGGAACAAACTTT----------TTTTTAAGTGCTTTTGGAGGAATG-GTGC---TCTTCCAGCTCTATATGATGCCTCTCTCCTCTTGAATTCGGATCACT-----------TGCTTGTGGTAGAATGTCTTATTTTGTACTCTAGAGAATGCTT-------ATACTCTTGAGTGGAAACATGAGGGAG--TTTCAATAACAGATTGTTCTCTAAAAATAGTCCCTTCAGCCTTTCCTATTAAACTAGGTGTCAAGGCTCAGGGTTAGCAAAGCAGTTGGTTAGAGCAAAAGCAGCACAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80823455 422 + 112612857 TTCACCAATTTTGTGGCAAAGAAAAACGT-CTTATTCCATCCCTTTAGAGATGGTAAACCTAGATTTGGAGT---GTATAATGATTCTGAGATGGCATTGACTTCTTCATCCTTTTCAATTGGAAAAGAGGCTGCCTCAGTCCTAGACTGCATTGTTTT-GGGAACAAACTTT----------TTTTTAAGTGCTTTTGGAGGAATG-GTGC---TCTTCCAGCTCTATATGATGCCTCTCTCCTCTTGAATTCGGATCACT-----------TGCTTGTGGTAGAATGTCTTATTTTGTACTCTAGAGAATGCTT-------ATACTCTTGAGTGGAAACATGAGGGAG--TTTCAATAACAGATTGTTCTCTAAAAATAGTCCCTTCAGCCTTTCCTATTAAACTAGGTGTCAAGGCTCAGGGTTAGCAAAGCAGTTGGTTAGAGCAAAAGCAGCACAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76872520 425 + 107442819 TTCACCAATTTTGTGGCAAAGAAAAATGT-CTTATTCCATTCCTTTAGAGATGGTAAACCTAGATTTGGAGT---GTATAATGATTCTGAGATGGCATTGACTTCTTCATCCTTTTCAATTGGAAAAGAGGCTGCCTCAGTCCTAGACTGGATTGTTTT-Gggaacaaacttt----------tttttaagtgcttttgGAGGAATG-GTGCTCTTCTTCCAGCTCTGTATGATGCCTCTCTCCTCTTGAATTCGGATCACT-----------TGCTTGTGGTAGAATGTCTTATTTTGTACTCTAGAGAATGCTT-------ATACTCTTGAGTGGAAACATGAGGGAG--TTTCAATAACAGATTGTTCTCTAAAAATAGTCCCTTCAGCCTTTCCTATTAAACTAGGTGTCAAGGCTCAGGGTTAGCAAAGCAGTTGGTTAGAGCAAAAGCAGCACAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81135728 425 + 108555830 TTCACCAATTTTGTGGCAAAGAAAAATGT-CTTATTCCATTCCTCTAGAGATGGTAAACCTAGATTTGGAGT---GTATAATGATTCTGAGATGGCATTGACTTCTTCATCCTTTTCAATTGGAAAAGAGGCTGCCTCAGTCCTAGACTGGATTGTTTT-GGGAACAAACTTT----------TTTTTAAGTGCTTTTGGAGGAATG-GTGCTCTTCTTCCAGCTCTGTATGATGCCTCTCTCCTCTTGAATTCAGATCACT-----------TGCTTGTGGTAGAATGTTTTATTTTGTACTCTAGAGAATGCTT-------ATACTCCTGAGTGGAAACATGAGGGAG--TTTCAATAACAGATTGTTCTCTAAAAATAGTCCCTTCAGCCTTTCCTATTAAACTAGGTGTCAAGGCTCAGGGTTAGCAAAGCAGTTGGTTAGAGCAAAAGCAGCACAG i chlSab2.chr12 C 0 C 0 s mm10.chr19 38026516 404 - 61431566 ctcccccacatCATGGCAAAGGGAAACAC-GTCAATATGTCTC---------------------TTTGGGGG---ATCCTATGTTTCTGAGATTGTATTAGCTTTTTCG-CCTCCCTGACTGGAAAGGCT-CCATCCAAATCCTGGAGT-----------GAAGACAGGCTTTCCA-------TCCTTTAGTGCAGTGTGATAAGGGTGTGTCCCTCTTCCTGATACCTATGATATTCCTCTCCTGTTGAATTCAGATGACTCTCAGCCAGCATGCTCATCCTGACAGGGTGTTTTCTGTGCTTGGAAGAATGCTGACTTATAATACCCTTGAGTGGGCACATGACAGAGTCTCTCCATAACAGATTGTTCTCTCAAAATAGTCCTCTTAGCCTTTCCTGTCAAGTCAGGTCTCAAGGCACAGAGTCCG---------TTGCTAAAACAGAATGGGTA--- i mm10.chr19 I 333 C 0 s canFam3.chr1 35262480 419 - 122678785 -------------TGGCAAAAGAAAACTTCCTTATAACATCTCTTTGGAAACGGTAAACCTGGCTCTCAAAT---GTAGGATCATGGTGAGAT-GCATTCATTTTCTCAGCATTTCCAGGTGAAAAGCCCGCTGCCTCAGTCCTGGGCTAGA----TTTGGGGGGCGAATTTTATGTATTTATATTTTAAGTGCATTTGGATAATTG-CTGCCCAGCTTCCAGCTCCATATGATACCTCTCTCCTCTTGAATTTGGATGGCC-----------CACTCCTGGTAGGATGCTTTCTTTCATACCTAAGGGAATGCTT-------ACACTCTTGAGTGGAAACATGAGGGAA--TTTCAGAAACAGATTGTTCTCTAAAAATAGTCCCTTCAGCCTTTTGCATTAAACTAGGTGTCAAGGCTCAGAGTTAGCAGGGCAGTTTGTTAGAGCAAAAGCAGCACAG i canFam3.chr1 C 0 C 0 e calJac3.chr1 111363108 1850 - 210400635 M a score=1185483.000000 s hg38.chr9_GL383541v1_alt 52794 327 + 171286 AGCGTTCCCTTGGAGATTGTCATATATGGCTGTGAAACTCCAGGA--------AGGCAGACCTTAGAATTCTTCACAAGTTAGAGGAGAGAAACCCAAATGCCAGGTCACTCTTTTT--CTTTACTTAAATAATATG------------TCAGCATCAGGAAGTAGT--TTAAATAATAGA--------------------------CGATCTGTTAGCA-----CAATGAAAACCCTGTCATCTTCCTGTGTTTGGGGCCTGGATTAATTTATTCTAGGTTCTCTTATGGTTAGTAGTGGCTCCAGAATG-----TG----GCGAGGGcttgaggctatgttttcacagactttt-tgtaagactgaaaaagtataaattgatcacgtcaa s panTro4.chr9 68618528 327 + 137840987 AGCGTTCCCTTGGAGATTGTCATATATGGCTGTGAAACTCCAGGA--------AGGCAGACCTTAGAATTCTTCATAAGTTAGAGGAGAGAAACCCAAATGCCAGGTCACTCTTTTT--CTTTACTTAAATAATATG------------TCAGCATCAGGAAGTAGT--TTAAATAATAGA--------------------------TGATCTGTTAGCA-----CAATGAAAACCCTGTCATCTTCCTGTGTTTGGGGCCTGGATTAATTTATTCTAGGTTCTCTTATGGTTAGTAGTGGCTCCAGAATG-----TG----GCGAGGGcttgaggctatgttttcacagacttct-tgtaagactgaaaaagtataaattgatcacgtcaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64774205 327 + 135191526 AGCGTTCCCTTGGAGATTGTCATATATGGCTGTGAAACCCCAGGA--------AGGCAGACCTTAGAATTCTTCACAAGCTAGAGGAGAGAAACCCAAATTCCAGGTCACTCTTTTT--CTTTACTTAAATAATATG------------CCAGCATCAGGAAGTAGT--TTAAATAATAGA--------------------------TGATCTGTTAGCA-----CAATAAAAACCCTGTCATCTTCCTGTGTTTGGGGCCTGGATTAATTTATCCTAGGTTCTCTCATGGTTAGTAGTGGCTCCAGAATG-----TG----GGGAGGGcttgaggctatgttttcacagactttt-tgtaagactgaaaaagtacaaattgataacgtcaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57813055 327 - 122973662 AGCGTTCCCTTGGAGATTGTCATATATGGCTGTGAAACCCCAGGA--------AGGCAGAACTTAGAATTCTTCACAAGTTAGAGGAGAGAAACCCAAATGCCAGGTCACTCTTTTT--CTTTACTTAAATAATACG------------CCAGCATCAGGAAGTAGT--TCAAATAATAGA--------------------------CGATCTGTTAGCA-----CAATAAAAACCCTGTCATCTTCCTGTGTTTGGGGCCTGGATTAATTTATCCCAGGTTCTCTCATGGTTAGTAGTGGCTCCAGAATG-----TG----GGGAGGGctcgaggctatgttttcacagactttt-tgtaagactgaaaaggtataaattgatcacgtcaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79743690 322 + 112192347 AGCGTTCCCTTGGAGATTGTCATATATGGCTGTGAAATCCCAGGA--------AGGCAGACCTTAGAATTCTTCACAAGTTAGAGGAGAGAAACCCAAATGCCAGGTCACTCTTTTT-------CTTGAATAATATG------------CCAGCATCAGGAAGTAGT--TTAAATAATAGANNNNNNNNNNNNNNNNNNNNNNNNNN-------------------------------GTCATCTTCCTGTGTTTGGGTCCTGGATTAATTTATGCCAGGTTCTCTCATGGTTAGCTGTGGCTCCAGAATG-----TG----GGGAGAGcttgaggctatgttttcacagactttt-tgtaagactgaaaaagtataaattgatcacgtcaa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80823877 322 + 112612857 AGCGTTCCCTTGGAGATTGTCATATATGGCTGTGAAACCCCAGGA--------AGGCAGACCTTAGAATTCTTCACAAGTTAGAGGAGAGAAACCCAAATGCCAGGTCACTCTTTTT-------CTTGAATAATATG------------CCAGCATCAGGAAGTAGT--TTAAATAATAGA--------------------------CGATCTGTTAGCA-----CAATAAAAACCCTGTCATCTTCCTGTGTTTGGGTCCTGGATTAATTTATGCCAGGTTCTCTCATGGTTAGCCGTGGCTCCAGAATG-----TG----GAGAGAGcttgaggctatgttttcacagactttt-tgtaagactgaaaaagtataaattgatcacgtcaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76872945 322 + 107442819 AGCGTTCCCTTGGAGATTGTCATATATGGCTGTGAAACCCCAGGA--------AGGCAGACCTTAGAATTCTTTACAAGTTAGAGGAGAGAAACCCAAATGCCAGGTCACTCTTTTT-------CTTGAATAATATG------------CCAGCATCAGGAAGTAGT--TTAAATAATAGA--------------------------TGATCTGTTAGCA-----CAATAAAAACCCTGTCATCTTCCTGTGTTTGGGTCCTGGATTAATTTATGCCAGGTTCTCTCATGGTTAGCCGTGGCTCCAGAATG-----TG----GGGAGAGCTTGAGGCTATGTTTTCACAGACTTtt-tgtaagactgaaaaagtatAAATTGATCACGTCAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81136153 322 + 108555830 AGCGTTCTCTTGGAGATTGTCATATATGGCTGTGAAACCCCAGGA--------AGGCAGACCTTAGAATTCTTCACAAGTTAGAGGAGAGAAACCCAAATGCCAGGTCACTCTTTTT-------CTTAAATAATATG------------CCAGCATCAGGAAGTAGT--TTAAATAATAGA--------------------------TGATCTGTTAACA-----CAATAAAAACCCTGTCATCTTCCTGTGTTTGGGTCCTGGATTAATTTATGCTAGGTTCTCTCATGGCTAGTAGTGGCTCCAGAATG-----TG----GGGAGAGcttgaggctatgttttcacagactttt-tgtaagactgaaaaagtataaattgatcacgtcaa i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111365002 326 - 210400635 AGCGTTCCCTTGGACATTGTCATATATGTTTTCCTGACCCCAGGA--------AGGCAGACCTTAGAATTCTTCACAAGTTAGAGGAGAGAAACCCAAATGCCAGGTCATGCTTTTT--CTTTGCTTGAGAGATACT------------CTGCCATCAGGAAGTAGT--TTAAATAATAGA--------------------------TGATCTGTTAGCA-----CAATAAAAACCCTATCATCTTCCTGTGTTTGGGGCCTGGATTAATTT-TCCTAGGTTTTCTCATGGTTAATAGTGGCTCCAGAATG-----TG----GGGAGGGcttgaggctgtgttttcacagactttt-tgtaagactgaaaaagtataatttgatcatgtcaa i calJac3.chr1 M 1850 C 0 s mm10.chr19 38026920 310 - 61431566 --CTTTCCATTGCAGATTGTCCTTTAGGGCTGTGAAGGCCCAGGAGGCTCAGGGGACATACCTCAA---CCATCACCAGCTAGA-GAGAAGAGCTGAAATTTTAGGTCAATTTTTCT----TTACTTAAA------------------------------AAGCAATAACTAAAAACTAAA--------------------------TAAACTGTTTACA-----TGGTGAAAG----ATTGTTGTTCTGACTGAGGGACCTCAGTTAATTTATTCTAGGTT-TCTTCTGTCTA-TAGTAGCTCCAAAATGAGAGCTA----AGGAGGTCCTGAGGCTGTGTTTTTATAGCCCTCT-CATAGAAGTAAAGAGATATAAATTGGCCGTGTCAA i mm10.chr19 C 0 I 434 s canFam3.chr1 35262899 350 - 122678785 ACTGTTCCCTTGGAGATTGTCTTATATGGCTGTGAAAGCCCAGGA--------AGGCAGACTTTGGAATTCTTCATGAGTTGGAGGAGAGAAACCCAAATGCCAGGTCAATTTGTTTTGCTTTAGTGAAAAAATAAGGATTAAAAAAATACAGTATCAGGAAGTAGA--TTAAATAATAGA--------------------------TGATCCATTAGCACAGTCCAGTCAAAATTCCATCAT-TTCCTGTGGTCTGGGCCTCGATTAATTTATTCTGGGTTCTGTCTTGGTCAATGGTGGTTCTAGAATG-----TGGGGTGGGAGGGCTTGAAGCTGCATCTCCATGACCTTTTGTGTAAGATTGAAGAGGTATAAATGGATTGTGTCAA i canFam3.chr1 C 0 C 0 a score=2412495.000000 s hg38.chr9_GL383541v1_alt 53121 665 + 171286 agaatgaaggagtagctgatACGCAACAGAGGTGAAACCCTCCTTCTTCCT----CCCTTCCTC----------TTGACACTTTAATTGTTCTAACTTGGTGGATGATTCTCATCATAAAGGCCCAAGGTTATATCCAAGGTTA--------AAC---TGGACcagcgatgtccaatagagctttctgtgataatagaaatgttgggtacctgggctgttctgtactatagctgcttgcccaatggggctattgagcagtagagatgtggctggtatgactgagaaacaaaatgtttaattttatttcctttcagttagtttaaatgtaaatagccacatttaaatggc-tagtggctgacatttagacagcATGGCTCCATGATGCATGGAATAGGCA-TCAGGAATTATAATTTCTGAACTCTACCTTCATGAGAAATTGAGATGATGGTAGTGTCATGTTAGTGCTGTATGCATCACATGCCCATCTTAGAGAATAGTTATCATTGACCCTTGCTT--CCTCTTTGGATGTTCTGAGGGGTGCAGGCCATTTGGAC-------TTTCTTATTGGTTTTCATGAACCAGAGATGTCAATGCCAAG----CCTTTC-TTGACTGTGT---TGGTCCATTTGCAAGAAACAAAGCAGGGATTCAGTCC-------AGGAGAGGCAAGCTAGTATGAAAGC--CCAGCCCAAACAACAA s panTro4.chr9 68618855 665 + 137840987 agaatgaaggagtagctgatACGCAACAGAGGTGAAACCCTCCTTCTTCCT----CCCTTCCTC----------TTGACACTTTAATTGTTCTAACTTGGTGGATGATTCTCATCATAAAGGCCCAAGGTTATATCCAAGGTTA--------AAC---TGGACcagcgatgtccaatagaactttctgtgataatagaaatgttgggtacctgggctgttctgtactatagctgcttgcccaatggggctattgagcagtagagatgtggctggtatgactgagaaacaaaatgtttaattttatttcctttcagttagtttaaatgtaaatagccatatttaaatggc-tagtggctgacatttagacagcATGGCTCCGTGATGCATGGAATAGGCA-TCAGGAATTATAATTTCTGAACTCTACCTTCATGAGAAATTGAGATGATGGTAGTGTCATGTTAGTGCTGTATGCATCACATGCCCATCTTAGAGAATAGTTATCATTGACCCTTGCTT--CCTCTTTGGATGTTCTGAGAGGTGCAGGCCATTTGGAC-------TTTCGTATTGGTTTTCATGAACCAGAGATGTCAATGCCAAG----CCTTTC-TTGACTGTGT---TGGTCCATTTGCAAGAAACAAAGCCGGGATTCAGTCC-------AGGAGAGGCAAGCTAGTATGAAAGC--CCAGCCCAAACAACAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64774532 666 + 135191526 agaatgaaggagtagctgatACGCAACAGAGGTGAAACCCTCCTTCTTCCT----CCCTTCCTC----------TTGACACTTTAATTGTTCTAACTTGGTGGATGATTCTCATCATAAAGGCCCAAGGTTATATCCAAGGTTA--------ATC---TGGACcagcgatgtccaatagaacttcctgtgataatagaaatgttgggtacctgggctgttctgtacgatagctgctggcccaatggggctgttgagcagtagagatgtggctggtatgactgagaaatgaaatgtttaattttatttcctttcagttagtttaaatgtaaatagccacatttaaatggcttagtggctgacatttagacagcATGGCTCCCTGATGCATGGAATGGGCA-TCAGGAATTATGATTTCTGAACTCTGTCTTCATGAGAAATTGAGATGATGGTAGTGTCATGTTAGTGCTGTATGCATCACATGCCCATTTTAGAGAATAGTTATCATTGACCCTTGCTT--CCTCTTTGGATGTTCTGAGAGGTGCAGGCCATTTGGAC-------TTTCTTATTGGTTTTCATGAACCAGAGATGTCAATGCCAAG----CCATTC-TTGACTGTGT---TGGTCCATTTGCAAGAAACAAAGCAGGGATTCAGTCC-------AGGAGAGGCAAGCTAGTATGAAAGC--CCAGCCCAGACAACAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57813382 667 - 122973662 agaatgaaggagtagctgatACGCAACAGAGGTGAAACCCTCCTTCTTCCT----CCCTTCCTC----------TTGACACTTTAATTGTTCTAACTTGGTAGATGATTCTTATCATAAAGGCCCAAGGTTATATCCAAGGTTA--------ATC---TGGACcagcaatgtccagtagaactttctgtgataatagaaatgttgggtacctgggctgttctgtactatagctgctggcccaatggggctattgagcagtagagatgtggctggtatgactgagaaacaaaatgtttaattttatttcttttcagttagtttaaatgtaaatagccacatttaaatggc-tagtggctgacatttagacagcATGGCTCCCTGATGCATGGAATGGGCA-TCAGGGATTATGATTTCTGAACTCTGTCTTCATGAGAAATTGAGATAATGGTAGTGTCACGTGAGTGCTGTATGCATCACATGCCCATCTTAGAGAATAGTTATCACTGACCCTTGCTT--CCTCTTTGGATGTTCTGAGAGGTACAGGCCATTTAGAC-------TTTCTTATTGGTTTTCATGAACCAGAGATGTCAATGCCAAG----CCATTC-TTGACTGTATTGGTGGTCCATTTGCAAG-AACAAAGCAGGGATTCAGTCC-------AGGAGAGGCAAGCTAGTATGAAAGC--CCAGCCCAAACAACAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79744012 665 + 112192347 agaatgaaggagtagctgatgCGCAACAGAGGTGAAACCCTCCTTCTTCCT----GCCTTCCTC----------TTGATACTTTAATTGTTCTAACTTGGTGGATGATTCTCATCATAAAGGCCTAAGGTTATATCCAAGGTTA--------ATC---TGGACTagcgatgtccaatagaactttctgtgataatagaaatgttgggtacctgggctgttctgtactatagctgctgacccaatgtggctattgagcagtagaaatgtggctggtgtgactgagaaatgaaatgtttaattttatttcctttcagttagtttaaatgtaaatagccacatttaaatgac-tagtggctgacatttagatagcATGGCTCCCCGATGCATGGAATGAGCA-TCAGGAATTATGATTTCTGAACTCTGTCTTCACGCAAAATTGAGATGATGGTAGTGTCATGTTAGTGCTGTATGTGTCACATGCCCATCTTAGAGAATAGTTATCATTGACCCTTGCTT--CCTCTTTGGATGTTCTGAGAGGTGCAGGCCATTTGGAC-------TTTCTTATTGGGTTCCATGAACCAGAGATGTCAATGCTAAG----CCATTC-TTGACTGTGC---TGGTCCATTCGCAAGAAACAAAGCAGGGATTCATTCC-------AGGAGAGGCAAGCTAGTTTGAAAGC--CCAGCCCAAACAACAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80824199 665 + 112612857 agaatgaaggagtagctgatgCGCAACAGAGGTGAAACCCTCCTTCTTCCT----GCCTTCCTC----------TTGATACTTTAATTGTTCTAACTTGGTGGATGATTCTCATCATAAAGGCCTAAGGTTATATCCAAGGTTA--------ATC---TGGACTagcgatgtccaatagaactttctgtgataatagaaatgttgggtacctgggctgttctgtactatagctgctgacccaatgtggctattgagcagtagaaatgtggctggtgtgactgagaaatgaaatgtttaattttatttcctttcagttagtttaaatgtaaatagccacatttaaatgac-tagtggctgacatttagacagcATGGCTCCCCGATGCATGGAATGAGCA-TCAGGAATTATGATTTCTGAACTCTGTCTTCACGCAAAATTGAGATGATGGTAGTGTCATGTTAGTGCTGTATGTGTCACATGCCCATCTTAGAGAATAGTTATCATTGACCCTTGCTT--CCTCTTTGGATGTTCTGAGAGGTGCAGGCCATTTGGAC-------TTTCTTATTGGGTTCCATGAACCAGAGATGTCAATGCTAAG----CCATTC-TTGACTGTGT---TGGTCCATTCGCAAGAAACAAAGCAGGGATTCATTCC-------AGGAGAGGCAAGCTAGTTTGAAGGC--CCAGCCCAAACAACAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76873267 665 + 107442819 AGAATGAGGGAGTAGCTGATGCGCAACAGAGGTGAAACCctccttcttcct----gccttcctc----------ttgATACTTTAATTGTTCTAACTTGGTGGATGATTCTCATCATAAAGGCCTAAGGTTATATCCAAGGTTA--------ATC---TGGACTAGCgatgtccaatagaactttctgtgataatAGAAATGTTGGGTACCTGGGCTGTTCTGTACTATAGCTGCTGACCCAATGTGGCTATTGAGCAGTAGAAATGTGGCTGGTGTGACTGAGaaatgaaatgtttaattttatttcctttcagttagtttaaatgtaaatagccacaTTTAAATGAC-TAGTGGCTGACATTTAGACAGCATGGCTCCCCGATGCATGGAATGAGCA-TCAGGAATTATGATTTCTGAACTCTGTCTTCACACAAAATTGAGATGATGGTAGTGTCATGTTAGTGCTGTATGTGTCATATGCCCATCTTAGAGAATAGTTATCATTGACCCTTGCTT--CCTCTTTGGATGTTCTGAGAGGTGCAGGCCATTTGGAC-------TTTCTTATTGGGTTCCATGAACCAGAGATGTCAATGCTAAG----CCATTC-TTGACTGTGT---TGGTCCATTCGCAAGAAACAAAGCAGGGATTCATTCC-------AGGAGAGGCAAGCTAGTTTGAAAGC--CCAGCCCAAACAACAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81136475 665 + 108555830 agaatgaaggagtagctgatgCGCAACAGAGGTGAAACCCTCCTTCTTCCT----GCCTTCCTC----------TTGATACTTTAATTGTTCTAACTTGGTGGATGATTCTCATCATAAAGGCCTAAGGTTATATCCAAGGTTA--------ATC---TGGACTagtgatgtccaatagaactttctgtgataatagaaatgttgggtacctgggctgttccgtactgtagctgctggcccaatgtggctattgagcagtagaaatgtggctgatgtgactgagaaatgaaatgtttaattttatttcctttcagttagtttaaatgtaaatagccacatttaaatggc-tagtggctgacatttagacagcATGGCTCCCCGATGCATGGAATGGGCA-TCAGGAAGTATGATTTCTGAACTCTATCTTCACGCGAAATTGAGATGATGGTAATGTCATGTTAGTGCTGTGTGTGTCACATGCCCATCTTAGAGAATAGTTATCATTGACCCTTGCTT--CCTCTTTGGATGTTCTGAGAGGTGCAGGCCATTTGGAC-------TTTCTTACTGGGTTCCATGAACCAGAGATGTCAATGCTAAG----CCATTC-TTGACTGTGT---TGGTCCATTCGCAAGAAACAAAGCAGGGATTCATTCC-------AGGAGAGGCAAGCTAGTTTGAAAGC--CCAGCCCAAACAACAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111365328 675 - 210400635 agaataaaggagtagctgatgCATAACAGAGATGAAATCTTCCTTCTCCATGGTACTTTAGTTG----------TTGGCACTTTAATTGTTTTATCTTGGTGGATGATTCTCATCATAAAGGcccaaggttatacccaaggttatatccaagATCTATTGGACcagtgatgtccaatagaactttttgtaataatagaaatgttggatacctgggctattctataaaatagccactggcccaatgtggctcttgagcagtagaaacatggctgacgtgactgagaaatgaaatgtttaattttacttcctttcagttagtttccatgtaaatagccacatttagatggc-tagtgactgacgtttagacagcatagCTCCCTTATGCATGGAATGGGCATTTAGGAATGATGATTTCTGAACTCTGCCTTCATGCAAAATTGAGATGATGGTAGTGTCGTGTTAGTACTGTATGTGTCACATGTCCATCTTAGAGAATAG-GATCATTGACCTTTGCTT--CCTCTTTGGTTGTTCTGAAAAGTGCAGGCCATTAGGAC-------TCTCTTA-----GCCAATGAACCAGAAATGTCAATGCTAAG----TCATTC-TTGACTGTGT---TGGTCTATTTGCAAGAAACAATGCAGGAATTCAGTCC-------AGGAGAGGGAGGCTGGTATGAAAGC--CCAGCCCAAACAGCAA i calJac3.chr1 C 0 C 0 s mm10.chr19 38027664 601 - 61431566 aaaaCAAAAAAAAACCTAATGGATAATAGAGTTTAAAGCTCCCTTCTCTAC----CCCTCCCCCAGGCCTCAAACTGCTATTTTAACTGCTCTGACT----------------TCATGAAGGCTCAAAGTTATGTCTAAGATAT--------ATC---TATTTTGGAGA----------AAtcttctatgatggcaaca--ggtatatacct-ggctgtcctctatagtaacca-----------tgacaactgcataactgaaatgtggttatcatggctggggaagtaaatgcttactcatatgttatttgaaatagtt------taagtagccacatttagatggc-cattgtctactattcagacagcatagCTCCTCGATGCTTAGAATGGGTG-CCAGGAATTATGATTTCTGAGTTCTGTCTTCATGTCCAATTAAGATGCTA----------------------------ATGTGTTCATTTTCCA-------TATGATTGACTCTCACTCTGCTGCTTTGGACAGTCTGAGAGGTATGGGCCACTTAGATATCCTTGCTCCTTACTGGACTTCATGGAACAGAGATGTGATTGTCAAGAGTTCCTTGT-CTGGTTGTTT---TGTTTTGTTTGCCAAAAAGCAAATGTTGAT---------------GGAAAAACAAGACAAAAAAAAAGCAAAAAACCaaaaccacaa i mm10.chr19 I 434 I 294 s canFam3.chr1 35263249 646 - 122678785 AGAATAAAGGGATAGTTGACAGACAGTAGAGCT----TCTCCACCCCCTCG----GGCCTCATC----------TTGGTGCTTTAATTGCTCTCACTTCGTAGATGACTCTTGTCACAAAGGCCCAAGGCTGTATCCAAGGTTA--------ATC---TGGACcagtgatgtccaacagaactctctgtaatgatggaaatgatgtgtgcctgtact--------taacagccactggccagatatggctgttaagcagttgaaatatagctag--tgattgaggagctacatttttaatgt------atttcaagtggtttaattttaagtagtcacatttaaatggc-tgtcagctgccatttggacagcacagCTCCACA----CTTGAATGGAAG-TCAAG-ATTATAATTCATGAACTCTGTCTTTATGTCAAATGAAGATGATGGTAATGTCATGTTAATGCTGTTTGCATTAAAGGTCCACCTTCTACAACAGATAGAATGGGCCCAGGCCT--CCCCTTTGGGTATTCTGAGAGGTATGGGCCATCCAGAC-------TTCCTTACTAGATTCCATGAGCCAGAGATGTCAGTGCCAAG----CTATTCTTTGACTCTAT---TGGTCCATTTACAAGATCCAAACCAGGGATTCAATCCTGAATAGAATAGAGGCAGAATAACATGGAG----TCTGCTCAGATAGCAA i canFam3.chr1 C 0 C 0 a score=117941.000000 s hg38.chr9_GL383541v1_alt 53786 39 + 171286 AAGGTGTGAAGTTACAACACTGCACTGCATGTGATATTC s panTro4.chr9 68619520 34 + 137840987 AAGGTGTGAAGTTACAACACTGCA-----TGTAATATTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64775198 34 + 135191526 AAGGTGTGAAGTTACAACACTGCA-----CGTGATATTC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57814049 34 - 122973662 AAGGCGTGACATTACAACACTGCA-----CATGATATTC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79744677 34 + 112192347 AAGGTGTGAAGTTACAACACTGCA-----CCTGATATTC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80824864 34 + 112612857 AAGGTGTGAAGTTACAACACTGCA-----CCTGATATTC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76873932 34 + 107442819 AAGGTGTGAAGTTACAACACTGCA-----CCTGATATTC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81137140 34 + 108555830 AAGGTGTGAAGTTACAACACTGCA-----CCTGATATTC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111366003 34 - 210400635 AAGGTGTGAAGTTACAGCACTGCA-----TCTGACATTC i calJac3.chr1 C 0 C 0 s canFam3.chr1 35263895 34 - 122678785 AAGTTGTGAATTCACAACACTGTA-----CCTGATATTC i canFam3.chr1 C 0 C 0 e mm10.chr19 38028265 294 - 61431566 I a score=270996.000000 s hg38.chr9_GL383541v1_alt 53825 82 + 171286 ACAGGTAAGAAAATTTCATTTGTATGTATGTGTCCCTTGAAACTCAGAATCAATTAATTAATTTCAGAGACTTCACTCTACC s panTro4.chr9 68619554 82 + 137840987 ACAGGTGAGAAAACTTCATTTGTATGTATGTGTCCCTTGAAACTCAGAATCAATTAACTAATTTCAGAGACCTCACTCTACC i panTro4.chr9 C 0 I 6 s ponAbe2.chr9 64775232 80 + 135191526 ACAGGTGAGAAAACTTCATTTGTATGTATGTGTCCCTTGAAACTCAGAATCAATTAATTAATTTCAGAGACTTCACTCTA-- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57814083 80 - 122973662 ACAGGTGAGAAAACTTCATTTGTATGTATGTGTCCCTTGAAACTCAGAATCAATTCATTAATTTCAGAGACTTGACTTTA-- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79744711 82 + 112192347 ACAGGTGAGAAAACTTCATTTGTATGTATGTGTCCCTTGAAACTCGGAATCAATTCATTAATTTCAGAGACTTCACTTTACC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80824898 82 + 112612857 ACAGGTGAGAAAACTTCATTTGTATGTATGTGTCCCTTGAAACTCGGAATCAATTCATTAATTTCAGAGACTTCACTTTACC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76873966 82 + 107442819 ACAGGCGAGAAAACttcatttgtatgtatgtgtccCTTGAAACTCGGAATCAATTCATTAATTTCAGAAACTTCACTTTACC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81137174 82 + 108555830 ATAGGTGAGAAAACTTCATTTGTGTGTATGTGTCCCTTGAAACTCGGAATCAATTCATTAATTTCAGAGACTTCACTTTACC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111366037 82 - 210400635 ACAGGTGAGAAAACTTCATTTGTGTGTATGTGTCCCTTGAAACTCAGAATCAATTCATTAATTTCAGAGATTTCACTTTACC i calJac3.chr1 C 0 C 0 s mm10.chr19 38028559 63 - 61431566 ACAGCTGAG-AAGCCTCATTTGCATGCATATCTTTCTTGAGATTGAGACTCAATTCTTTCATTT------------------ i mm10.chr19 I 294 C 0 s canFam3.chr1 35263929 59 - 122678785 ACAACTGAGGAAACTTTATTTGTGTCTATTTCTTT------ACTCACAGACAACCCA------------ACTCCACA----- i canFam3.chr1 C 0 C 0 a score=-8389.000000 s hg38.chr9_GL383541v1_alt 53907 24 + 171286 ATTCCTACTTATAATTTTTATTAG----------- s ponAbe2.chr9 64775312 8 + 135191526 ---CCCACTCA------------------------ i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57814163 8 - 122973662 ---CCCACTCA------------------------ i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79744793 6 + 112192347 -----CACTTA------------------------ i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80824980 6 + 112612857 -----CACTCA------------------------ i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76874048 6 + 107442819 -----CACTCA------------------------ i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81137256 6 + 108555830 -----CACTCA------------------------ i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111366119 6 - 210400635 -----CACTCA------------------------ i calJac3.chr1 C 0 C 0 s mm10.chr19 38028622 11 - 61431566 GCTTTGACTTT------------------------ i mm10.chr19 C 0 I 1 s canFam3.chr1 35263988 16 - 122678785 ------ATTCT-------------TGattttatat i canFam3.chr1 C 0 C 0 e panTro4.chr9 68619636 6 + 137840987 I a score=789018.000000 s hg38.chr9_GL383541v1_alt 53931 244 + 171286 GAAGTCAATTCCAC-CATTCCTACTTATAATTTTTATTAGGAAATAGAAAAAA---AACTGCTATAGTGCACAATGTGTGAGATCATG--ACAATTAGGGGTTCATTTGCTTTTGCAAAATCATCTTGAATGCAGGATGGATATCCAAGGTGACTCTGTAAGAGCACACACCATTTAATCTGTGTATCTTAC-TAACCTTAAATCAATCTGATAACTCCCTCTTACCCC---GTTTCTCTCCTTCAGAATGTTC s panTro4.chr9 68619642 247 + 137840987 AAAGTCAACTCCACTCATTCCTACTTATAATTTTTATTAGGAAATAGAAAAAA---AACTGCTATAGTGCACAGTGTGTGAGATCATG--ACAATTAGGGGTTCATTTGCTTTTGCAAAATCATCTTGAATGCAGGATGGATATCCAAGGTGACTCTGTAAGAGCACACACCATTTAATCTGTGTATCTTCC-TAACCTTAAATCAATCTGATAACTCCCTCTTACCCC-CTGTTTCTCTCCTTCAGAATGTTC i panTro4.chr9 I 6 C 0 s ponAbe2.chr9 64775320 248 + 135191526 AAAGTCAACTCCACTCATTCCTGCTTATAATTTTTATTAGGAAATAGAAAAAA---AACTGCTATAGTGCACAGTGTGTGAGATCATG--ACAATTAGGGGTTCATTTGCTTTTGCAAAATCATCTTGAATGCAGGATGGATATCTAAGGTGACTCTGTAAGAGCACACACCATTTAATCTGTGTATCTTAC-TAACCTTAAATCAATCTGATAACTCACTCTTACCCCCCTGTTTCTCTCCTTCAGAATGTTC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57814171 246 - 122973662 AAAGTTAACTCCACTCATTCCTGCTTATAATTTTTATTAGGAAATAG-AAAAA---AACTGCTATAGTGCACAGTGTGTGAGATCATG--ACAATTAGGGGTTCATTTGCTTTTGCAAAATCATCTTGAATGCAGGATGGATATCCAAGGTGAATCTGTAAGAGCACACACCATTTAATGTGTGTATCTTAC-TAACCTTAAATCAATCTGATAACTCCCTCTTACCCC-CTGTTTCTCTCCTTCAGAATGTTC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79744799 245 + 112192347 AAAGTCAGCTCCACTCATTCCTGCTTATAAGTTTTATTAGGAAATAGAAAAAAA-TAACTGCTATAATGCACAGTGTGTGAGATCATG--ACAATTAGGGGTTCATCTGCTTTTGCAAAATCATCTTGAATGCAGGATTGATATCCAAGGTGACTCTGTAAGAGCACACACCATTTAATCTGTGTATCTT-----ACCCTAAATCAAACTGATACCTCCCTCTTACCCC-CTGTTTCTCCCCTTCAGAATGTTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80824986 245 + 112612857 AAAGTCAGCTCCACTCATTCCTGCTTATAATTTTTATTAGGAAATAGAAAAAAA-TAACTGCTATAATGCACAGTGTGTGAGATCATG--ACAATTAGGGGTTCATCTGCTTTTGCAAAATCATCTTGAATGCAGGATTGATATCCAAGGTGACTCTGTAAGAGCACACACCATTTAATCTGTGTATCTT-----ACCCTAAATCAAACTGATAACTCCCTCTTACCCC-CTGTTTCTCCCCTTCAGAATGTTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76874054 245 + 107442819 AAAGTCAACTCCACTCATTCctgcttataatttttattaggaaatagaaaaaaa-taactgctaTAATGCAAAGTGTGTGAGATCATG--ACAATTAGAGGTTCATCTGCTTTTGCAAAATCATCTTGAATGCAGGATTGATATCCAAGGTGACTCTGTAAGAGCACACACCATTTAATCTGTGTATCTT-----ACCCTAAATCAAACTGATAACTCCCTCTTACCCC-CTGTTTCTCCCCTTCAGAATGTTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81137262 243 + 108555830 AAAGTCAACTCCACTCATTCCTGCTTATAACTTTTATTAGGAAATAGAAAAAAA-TAACTGCTATAATGCACAGTGTGTGAGATCATG--ACAATTAGGGGTTCATCTGCTTTTGCAAAATCATCTTGAATGCAGGATTGATATCCAAGGTGACTCTGTAAGAGCACACACCATTTAATCTGTGTATCTT-----ACCCTAAATCAGTCTGATAACTACCTCTTACCCC---GTTTCTCCCCTTCAGAATGTTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111366125 243 - 210400635 --AGTCAACTGTACTCATTCCAGCTTATAATTTTTATTAGGAAATGGAAAAAAA-TAACTGTTATAGTACACAGTGTGTGAGATCATG--ACAATTAGGCATTCATTTGCTTTTGCAAAATCATCTTGAATGCAGGACAGACATCCAAGGTGACTCTGTAAGAGCACACACCATTTAATCTGAATATCTT-----CCCCTAAATAAGTCTGATAACTCTCTCTTACTCC-CTGTTTCTCCCCTTTAGAGTGTTC i calJac3.chr1 C 0 C 0 s mm10.chr19 38028634 232 - 61431566 -------ATTCTACTCGTTCTTGCTTTGAATCTTTATCTGAACATAGAAAGCGT-TTATTACTGCAGTGC--CATTTGTGGAACTATAGTACCATTGTAAAAACAG-TATTATTACAAAA-CATC------ACAGTCCAGAGAACCATGATGGCATCTGAAGATCAAATGCCATTTAATATG-GAGTCTTACTTAGCCCTATATTAGACGGATACTTG--TCCTACATC-TGGTTTCTTCTCTTGGAAATGTTC i mm10.chr19 I 1 I 31 s canFam3.chr1 35264004 232 - 122678785 ----atatatatatatatttttttttttaa-----aCCAGAAAATAGAAAAGAACTAGTTGCTGT-------ACTTTGTGGGTTTGTG--ACAACCAGGGGATAAT-TAATATTAAGAAACAGCCTCATGTACAGTATAAATATCCAAGATGGCTTTGTAGGAGCAAACAGTGTTTGACCCATGTATCTTGC-TAACCTCAAATCAGTCTGATAACCCTCCCCTACTTC-CTGTTTCTGT-CTCCAGAGTGTTT i canFam3.chr1 C 0 C 0 a score=200081.000000 s hg38.chr9_GL383541v1_alt 54175 58 + 171286 ATGTTTTACCTTAGGCCCCTTCAGTGGTATTTTTCAAAGTGCCC---ACATAATG--TTTTAT s panTro4.chr9 68619889 58 + 137840987 ATGTTTTACCTTAGGCCCCTTCAGTGGTATTTTTCAAAGTGCCC---ACATAATG--TTTTAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64775568 58 + 135191526 ATGTTTTACCTTAGGCCCCTTCAGTGGTATTTCTCAAAGTGCCC---ACATAATG--TTTTAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57814417 58 - 122973662 ATGTTTTACCTTAGGCCCCTTCAGTGGTATTTTTCAAAGTGCCC---ACATAATG--TTTTAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79745044 58 + 112192347 ATGTTTTACCTTAGGCCCCTTCAGTGGTATTTTTCAAAGTGCCC---ACATGCTG--TTTTAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80825231 58 + 112612857 ATGTTTTACCTTAGGCCCCTTCAGTGGTATTTTTCAAAGTGCCC---ACATGCTG--TTTTAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76874299 58 + 107442819 ATGTTTTACCTTAGGCCCCTTCAGTGGTATTTTTCAAAGTGCCC---ACATGCTG--TTTTAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81137505 58 + 108555830 ATGTTTTACCTTAGGCCCCTTCAGTGGTATTTTTCAAAGTGCCC---ACATGCTG--TTTTAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111366368 58 - 210400635 GTGTTTTACATTAGGCCCCTTCAGTTGTAGTTTTCAATGTGCCC---ATATACTG--TTTTAT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35264236 62 - 122678785 ATGTTTTAACTTA-GTCCTTTCGGTGGTATTTTTCAAATCACCCCCTACCTAATAATTTTCAT i canFam3.chr1 C 0 C 0 e mm10.chr19 38028866 31 - 61431566 I a score=1291746.000000 s hg38.chr9_GL383541v1_alt 54233 445 + 171286 GCTACGTCAACCTAAAG--TGAAGAGGCtgaggcacaaaatataattt-aaacgtttcacaagccaagtgaggacagctgcccagaagactcagactcaagcaaccttgggtatgagctccattgacctttgttataagcaagtttttaaaggtgaagaaaggggacacggagtgaactaacacaaa-------gttaggaattcttattggtttacaaaaacaatgttgattagtgattggctatatacattgttaaggtatagggtgtgggttgtagtaccctgtgtagcatgattaggttaatttatagctatctgggcaatagcaagcagtttcaagacatgaaaacatagctcaaagccgggagtaggatgtaattgctacctccttttaatatctctctggacctgaaaattttaaaggatttgcgttcctccaatgaaaattcttttc s panTro4.chr9 68619947 447 + 137840987 GCTACGTCAACCTAAAAAATGAAGAGGCtgaggcacaaaatataattt-aaacgtttcacaagccaagtgaggacagctgcccagaagactcagactcaagcaaccttggatatgagctccattgacctttgttataagcaagtttttgaaggtgaagaaaggggacacggagtgagctaacacaaa-------gttaggaattcttattggtttacagaaataatgttgattagtgattggctatatacattgttaaggtatagggtgtgggttgtagtaccctgtgtagcatgattaggttaatttatagctacctgggcaatagcaagcagtttcaagacatgaaaacatagctcaaagccgggagtaggatgtaattgctacctccttttaatatctctctggacctgaaaattttaaaggatttgcattcctccgatgaaaattcttttc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64775626 443 + 135191526 GCTACGTCAACCTAAAG--TGAAGAGGCtgaggcacaaaatataattt-aaacggttcacaagccaagcgaggacagctgcccagaagactcagactcaagtaaccttggatatgagctccgttgacctttgttataagcaagtttttaaaggtgaagaaaggggacatggagtgagctaacacaaa-------gttaggaattcttattggtttacagatataatgttgattagtgattggctatatacattgttaaggtatagggtgtgggttgtagtaccctgtgtagcatgattaggttaatttatagctacctgagcaataccaagcagtttcaagacatgaaaac--agctcaaagctgggagtaggatgtaattgctacctccttttaatgtctttctggtcctgaaaatgttaaaggacttgcgttcctccaatgaaaattcttttc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57814475 445 - 122973662 GCTACGTCAACCTAAAG--TGAAGAGGCtgaggcacaaaatataatgt-atacggttcacaagccaagtgaggacagctgcccagaagactcagactcaagcaaccttggatatgagctctgttgacctttgttataagcaagtttttaaaggcaaagaaaggggacacggagtaagctaatacaaa-------gttaggaattcttattagtttacagaaataatgttgattagtgattggctatatacattgttaaggtatagggtgtgagttatagtaccctgtgtagcatgattaggttaatttatagctacctgggcaatagcaagcagtttcaagacatgaaaacgtagctcaaagctgggagtaggatgtgattgctacctccttttaatgtctctctgggcctgaaaattttaaagggcttgcattcctccaatgaaaattcttttc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79745102 452 + 112192347 GTGACATCAACCTAAAA--TGAAGAGGCtgagacacaaaatataattt-aaacggttcacaagccaagtgaggacagctgcccagaagcctcagatccaggcaaccttggatatgagctccgttgacctttgttataagcaagtttttaaaggcgaagaaaggggacaggcagtgagctaatacaaagttgtttgttaggaattctcattggtttatagaaataacgttgattaatgattggctatatacatgcttaaggtgtagggtgtgggttatagtaccctgtgtagcatgattaggttgatttatagctacctgggcaatagcaagcagtttcaagacatgaaaacatagctcaaagctgggagtaggatgtgattgctacctcattttaatgtctctctgggcctgaaaattttaaaggacttgcattcctccgatgaaaattcttttc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80825289 452 + 112612857 GTGACATCAACCTAAAA--TGAAGAGGCtgaggcacaaaatataattt-aaacggttcacaagccaagtgaggacagctgcccagaagcctcagatccaggcaaccttggatatgagctccgttgacctttgttataagcaagtttttaaaggcgaagaaaggggacaggcagtgagctaatacaaagttgtttgttaggaattctcattggtttatagaaataacgttgattaatgattggctatatacatgcttaaggtgtagggtgtgggttatagtaccctgtgtagcatgattaggttgatttatagctacctgggcaatagcaagcagtttcaagacatgaaaacatagctcaaagctgggagtaggatgtgattgctacctcattttaatgtctctctgggcctgaaaattttaaaggacttgcattcctccgatgaaaattcttttc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76874357 452 + 107442819 GCGACATCAACCTAaaa--tgaagaggctgaggcacaaaatataattt-aaacgGTTCACAAGCCAAGTGAGGACAGCTGCCCAGAAGCCTCAGATCCAGGCAACCTTGGATATGAGCTCCATTGACCTTTGTCATAAGCAAGTTTTTAAAGGCGAAGAAAGGGGACAGGCAGTGAGCTAATACAAAGTTGTTTGttaggaattctcattggtttataGAAATAATGTTGATTAATGATTGGCTATATACATGCTTAAGGTGTAGGGTGTGGGTTATAGTACTCTGTGTAGCATGATTGGGTTGATTTATAGTTACCTGGGCAATTACAAGCAGTTTCAAGACATGAAAACATAGCTCAAAGCTGGGAGTAGGATGTGATTGCCACCTCATTTTAATGTCTCTCTGGGCCTGAAAATTTTAAAGGACTTGCATTCCTCcgatgaaaattcttttc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81137563 441 + 108555830 GCGACAtcaacctaaaa--tgaagaggctgaggcacaaaatataattt-aaacggttcacaagccaagtgaggac-----------agcctcagatccaggcaaccttggatatgagctccgttgacctttgttataagcaagtttttaaaggcgaagaaaggggacaggcagtgagctaatacaaagttgtttgttaggaattctcattggtttatagaaataacgttgattaatgattggctatatacatgcttaaggtgtagggtgtgggttatagtaccctgtgtagcatgattaggttgatttatagctacctgggcaatagcaagcagtttcaagacatgaaaacatagctcaaaactgggagtacgatgtgattgctgcctcattttaatgtctctctgggcctgaaaattttaaaggacttgcattcctccgatgaaaattcttttc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111366426 443 - 210400635 GCTACGTCAAGCTAAAA--TGAAGAGGCtgaggcacaaaatataatttaaaactgttcatgagccaagtgaggacagctacccagaaaagtcagaccgaagtaaccttggatatgagctcagttgacctt----ataaacaagtttttaaaggtgaagaaagtggacagggagtgggctgatacaaagttgtttgttggaaattctcactgatttacagaaataacattgattggtgattggctatatacattgttgagatatacggtgtgggttttagtatcctgtgcagcatgatttggctaatttatagctacctgagtaataacaagcagtttcaagacatgaaaacatagctcaaagctgggattaggttgtgact-ctatctcattttaatgtcagtctgggcctgaaaattttaaaggacttgcattcttccaatgaaaa-----ttc i calJac3.chr1 C 0 C 0 e mm10.chr19 38028866 31 - 61431566 I e canFam3.chr1 35264298 0 - 122678785 C a score=28521.000000 s hg38.chr9_GL383541v1_alt 54678 8 + 171286 ttttctca- s panTro4.chr9 68620394 8 + 137840987 ttttctca- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64776069 8 + 135191526 ttttctca- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57814920 8 - 122973662 ttttctca- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79745554 8 + 112192347 ttttctca- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80825741 8 + 112612857 ttttctca- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76874809 8 + 107442819 ttttctca- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81138004 8 + 108555830 ttttctca- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111366869 8 - 210400635 ttttctCA- i calJac3.chr1 C 0 C 0 s mm10.chr19 38028897 9 - 61431566 TTTTCTTAC i mm10.chr19 I 31 C 0 e canFam3.chr1 35264298 0 - 122678785 C a score=4984400.000000 s hg38.chr9_GL383541v1_alt 54686 1286 + 171286 GCTGTTAATTAAGAAACAATGGG--TAGCCA-AG---CCTATCATGCAAGCTGCCATGTCC-----TGCCAACAAAAATCCTCATCCCCAGGCCTC---GCACACT-------------------------CAGAATTA--------------TTGCCCTCCTTCCCTTAGGAATTCTACCTCCTTAGGAAG---TGGGGAT--GTTGGATGGCCCACAGCAAACCCAGCCTGCTTCAGGTGACCAGCTCCAATTGATCTTTACTTCACAAACTGTCCATCTGAGAATCCCAAGACCTCAGGGTTAGCACAGAGGG----AGCCATCTTCTGGAATTTGTCTTCACTCCAGCCTCCCCC-TAGCTAGTGTGTTTTGTTGTCAAGACACCCAAC-TGGGTCACCA---ACTCCTGGCCTCTGATGCACACTCATTGGTAATAAA-CCATGCTCTACCTGACCCTCCACCCCAAGGGGAAGCCCTGAGATGCTA----TA----GATGACTATTGGCTCACTTACCGTGCATTATTAGCAGAGCTCCCAAAAGAATGAATCTCACTGGCACAGACTGTTG-TGTACAAG-TATGGATCTAGGATGATTTTCTGATGTTGAGACACAGAAGCTCT-CAAAGGGCTTATTCAAGGAACAAATTCATG--AC--ATTATAAACTGCTATAAGAATGACCTTAACTATTCTCT---CCTACTGAGTGAGCCACCCAGCAGAGCACCATGAGTATAAACAGCCCTAGACTGTCAGATCTTATTGTTTTGTTGATGAGCACACATGGTCCTTAAGCATACAGTGTGGGTGGTCTGCTGGGGGGTTATGAATCAAAGCCAAGGGGGTTTGCTTTCTGGTCAGCCTCCATGAGTTATTTGTGAGCACTGGACTAATTGCTTCTAAACTGCACATGTAATGGCCAC-TTCTGAGTTTTTGATAGGAAAATGGCTACTTGTTTATTCTCAGATGTCATAATAAATCTGTCCTTTGCAAACCAGAGACCCAGCATGAACACATGAAT--------GGGTGAGTTTCAGAGGACTTCCCTGGGA-TCCACAGCTCACTGTGCAACCTTGCAGAAGTTGTTTGACAGGTGTGCCTTCGGCCTGTCCCC---AACATAAGCAAAACACACCTGCCCTTTATCTGGCTGAGTGGGAGCATGTGCAGCTGCAGTCGATTAAAACTGAATGAAAGTTTGTCTGCAAACAGAGCTTCTTGGTGGTTAGATGTTGTGTAATTACAAGTGTTATTGCAAAATACTATTCTTATTTACTTTGTGTATGTT-----GAAACAC-TTTAAATGTATCATTCATTTTGTAGGGCAG--------ATAGTATTTTCTCCATCTCCTGTTT------------------------------------------------------TTGCTTT---------------------------------------------------------------AATACACTA s panTro4.chr9 68620402 1284 + 137840987 GCTGTTAATTAAGAAACAATGGG--TAGTCA-AG---CCTATCATGCAAGCTGCCATGTCC-----TGCCAACAAAAATCCTCATCCCCAGGCCTC---GCACACT-------------------------CAGAATTA--------------TTGCCCTCCTTCCCTTAGGAATTCTACCTCCTTAGGAAG---TGGGGAT--GTTGGATGGCCCACAGCAAACCCAGCCTGCTTCAGGTGACCAGCTCCAATTGATCTTTACTTCACAAACTGTCCATCTGAGAATCCCAAGACCTCAGGGTTAGCACAGAGGG----AGCCATCTTCTGGAATTTATCTTCACTCCAGCCTCCCCC-TAGCTGGTGTGTTTTGTTGTCAAGACACCCAAC-TGGGTCACCA---ACTCCTGGCCTCTGATGCACACTCATTGGTAATAAA-CCATGCTTTACTTGACCCTCCACCCCAAGGGGAAGCCCTGAGATGCTA----TA----GATGACTATTGGCTCACTTACCGTGCATTATTAGCAGAGCTCCCAAAAGAATGAATCTCACTGGCACAGACTGTTG-TGTACAAG-TATGGATCTAGGATGATTTTCTGATGTTGAGACA--GAAGCTCT-CAAAGGGCTTATTCAAGGAACAAATTCATG--AC--ATTATAAACTGCTATAAGAATGACCTTAACTATTCTCT---CCTACTGAGTGAGCCACCCAGCAGAGCACCATGAGTATAAACAGCCCTAGACTGTCAGATCTTATTGTTTTGTTGATGAGCACACATGGTCCTTAAGCATACAGTGTGGGTGGTCTGCTGGGGGGTTATGAATCAAAGCCAAGGGGGTTTGCTTTCTGGTCAGCCTCCATGAGTTATTTGTGAGCACTGGACTAATTGCTTCTAAACTGCACATGTAATGGCCAC-TTCTGAGTTTTTGATAGGAAAATGGCTACTTGTTTATTCTCAGATGTCATAATAAATCTGTCCTTTGCAAACCAGAGACCCAGCATGAACACATGAAT--------GGGTGAGTTTCAGAGGACTTCCCTGGGA-TCCACAGCTCACTGTGCAACCTTGCAGAAGTTGTTTGACAGGTGTGCCTTCGGCCTGTCCCC---AACATAAGCAAAACACACCTGCCCTTTATCTGGCTGAGTGGGAGCATGTGCAGCTGCAGTCGATTAAAACTGAATGAAAGTTTGTCTGCAAACAGAGCTTCTTGGTGGTTAGATGTTGTGTAATTACAAGTGTTATTGCAAAATACTATTCTTATTTACTTTGTGTAGGTT-----GAAACAA-TTTAAATGTATCATTCATTTTGTAGGGCAG--------ATAGTATTTTCTCCATCTCCTGTTT------------------------------------------------------TTGCTTT---------------------------------------------------------------AATACACTA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64776077 1288 + 135191526 GCTGTTAATTAAGAAACAATGGG--TAGTCA-AG---CCTATCATGCAAGCTGCCATGTCC-----TTTCAACAAAAATCCTCATCCCCAGGCCTT---GCACACT-------------------------CAGAATGT--------------TTGCCCTCCTTCCCTTAGGAATTCTACCTCCTTAGGAAG---TGGGGAT--GTAGGATGGCCCACAGCAAACCCAGCCTGCTTCAGGTGACCAGCTCCAATTGATCTTTACTTCACAAACTGTCCATCTGAGAATCCCAAGACCTCAGGGTTAGCACAGAGGG----AGCCATCTTCCGGAATTCGTCTTCACTCCGGCCTCCCCC-TAGCTGGTGTGTTTTGTTGTCAAGACACCCAAC-TGGGTCACCA---TCTCCTGGCCTCTGATGCACACCCATTGGTAATAAA-CCATGCTTTACTTGACCCTCCACCCCAAGGGGAAGCCCTGAGATGCTA----TA----GATGACTATTGGCTCACTTACCCTGCATTATTAGCAGAGCTCCCAAAAGAATGAATCTCACTGGCATAGACTGTTG-TGTACAAG-TGTAGATCTAGGATGGTTTTCTGATGTTGAGACACAGAAGCTCT-CAAAGGGCTTATTCAAGGAACAAATTCATG--AC--ATTATGAACTGCTATAAGAATGACCTTAACTATTCTTCTTGCCTACTGAGTGAGCCACCCAGCAGAGTACCATGAGTATAAACAGCCCTAGACTGTCAGATCTTATTGTTTTGTTGATGAGCACACATGGTCCTTAAGCATACAGTGTGGGTGGTCTGCTGGGGGGTTATGAATCAAAGCCAAGGGGGTTTGCTTTCTGGTCAGCCTCCACGAGTTATTCGTGAGCACTGGACTAATTGCTTCTAAACTGCACATGGAATCGCCGC-TTCTGGGTTTTTGACAGGAAAATGGCTACTTGTTTATTCTCAGATGTCATAATAAATCTGTCCTTTGCAAACCAGAGACCCAGCATGAACACATGAAT--------GGGTGAGTTTCAGAGGACTTCCCTGGGA-TCCACAGCTCACTGTGCAACCTTGCAGAAGTTGTTTGACAGGTGTGACTTCGGCCTGTCCCC---AACATAAGCAAAACACACCTGCCCTTCATCTGGCTGAGTGGGAGCATGTGCAGCTGCAGTCGATTAAAACTGAATGAAAGTTTGTCTGCAAACAGAGC-TCTTGGTGGTTAGATGTTATGTAATTACAAGTGTTATTGCAAAATACTATTCTTATTTACTTTGTGTATGTT-----GAAACAC-TTTAAGCGTATCATTCATTTTGTAGGGCAG--------ACGGTATTTTCTCCATCTCCTGTTT------------------------------------------------------TTGCTTT---------------------------------------------------------------AATACACTA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57814928 1266 - 122973662 GCTGTTAATTAAGAAACACGGGG--TAGTCA-AG---TCTATCACGCAAGCTGCCATGTCT-----TGCCAACAAAAATCCTCATTCCCAGGCCTT---GCACACT-------------------------CAGAATTA--------------TTGCCCTCCTTCCCTTAGGAATTCTACCTCCTTAGGAAA---TGGGGAT--GTTGGATGGCCCACAGCAAAACCAGCCTGCTTCAGGTGGCCAGCTCCAATTGATCTTTACTTCACAAACTGTCCATCTGAGAATCCCAAGACCTCAAGGTTAGCACAGAGGG----AGCCATCTTCCAGAATTCTTCTTTACTCCAGCCTCCCCC-TAGCTGGTGTGTTTTGTTGCCAAGACACCCAAA-TGGGTCACCA---TCTCCTGGCCTCTGATGCACACCCATTGGTAATAAA-CCATGCTTTACTTGACCCTCCACCCCAAGGGGAAGCCCTGAGATACTA----TA----GATGACTATTGGCTCAATTACCCTGCATTATTAGCAGAGGTTCCAAAAGAATGAAACTCACTGGCATAGACTGTTG-TGTACAAA-TGTAGATCTACGATGATTTTCTG-----GAGA---ATATGCTGT-CAAAGGGCTTATTCAAGGAACAAATTCATG--AC--ATTATGAACTGCTATAAGAATGACCTTAACTATTCTTCTCTCCTACTGAGTGAGCCACCCAGCAGAGTACCATGAGTATAAACAGCCCTAGACTGTCAGATCTTATTGTTTTGTTGATGAGCACACATGGGCCTTAAGCATACAGTGTGGGTGGTCTGCTGGCGGGTTATGAATCAAAGCCAAGGGGGTTTGCTTTCTGGTCAGCCTCCACGAATTATTTGTGAGCACCGGACTAATTGCTTCTAAACTGCACATGTAATGGCCAC-TTCTGGGTTTTTGACAGGAAAATGGCTACTTGTTTATTCTTAGTTGTCATAATAAATCTGTCCTTTGCAAACCAGAGACC---------------AAT--------GGGTGAGTTTCAGAGGACTTCCCTGGGA-TCCACAGCTCACTGTGCAACCTTGCAGAAGTTGTTTGATAGGTGTGCCTTCGGCCTGTCCCC---AACATAAGCAAAACACACCTGCCCTTTATCTGGCTGAGTGGGAGCATGTGCAGCTGCAGTCGATTAAAACTGAATGAAAGTGTGTCTGCAAACACAGCTTCTTGGTGGTTAGATGTTATGTAATTACAAGTGTTATTGCAAAATACTATTCTTATTTACTTTGTGTATGTT-----GAAACAC-TTTAAACATATCATTCATTTTGTAGGGCAG--------ATAGTATTTTCTCCATCTCCTGTTT------------------------------------------------------TTGCTTT---------------------------------------------------------------AATACACTA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79745562 1287 + 112192347 GCTGTTAATTAAGAAACAATGGG--TAGTCA-AG---CCTATCATGCAAGCTGCCATGTCC-----TGCCAACAAAAATCCTCATCACCAGGCCTT---GCACATT-------------------------CAGAATTA--------------TTGCCCTCCTTCCCTGAGGAATTCTACCTCCTTAGGAAG---TGGGGAT--GTTGGACGGCCCAGAGCAAACTGAGCCTGCTTCAGGTGACCAGCTCCAATTGATCTTTACTTCACAAACTGTCCATCTGAGAATCTCAAGACCTCAGGGTTAGCACAGAAGG----AGCCATCTTCCAGAATTTGTCTTCACTCCAGCCTCCCCC-TAGCTGATGTGTTTTGTTGACAAGACACCCAGC-TGGGTCACCA---TCTTCTGGCCTCTGATGCACACCCATTGATAATAAA-CCACGCTTTACTTGACCTTCCATCCCAAGGAGAAGCCCTGAGATGCTA----TA----GATGACTATTGGCTCACTTACCCTGCATTATTAGCAGAGCTCCCAAAAGAATGAATCTCACTGGCATGGACTGTTG-TGTGCAAA-TGTAGATCTAGGATGATTTTCTGATGTTGAGACACAGAAGCTCT-CAAAGGGCTTATTCAAGGAACAAATTCATG--AC--ATTATAAACTGCTATAAAAATGACCTTAACTATTCTTCTCTCCTACTGAATGAGCTACCCAGCAGAGCACCATGAGTATAAACAGCCCTAGACTGTCAGATCTTATTGTTTTGTTGATGAGCACACATGGTCCTTAAGCATACGGTGTGGGTGGTCTGCTGGCGGGTTATGAATCCAAGCCAAGGGGGTTTGCTTTCTGGTCAGCCTCCACGAGTTATTTGTGAGCACTGGACTAATTGCTTCTAAACTGCACATGTAATGGCCAC-TTCTGGGTTTTTGACAGGAAAATGGCTACTTGCTTATTCTCAGATGTCATAATAAATCTGCCCTTTGCAAACCAGAGACCTCTCATGAACACATGAAT--------GGGTGAGTTTCAGAGGACTTCCCTGGGA-TCCACAGCTCACTGCACAACCTTGCAGGAGTTATTTGACAGGTGTGCCTTCGGCCTGTCCCC---AACATAAGCAAAACACACCTGCCCTTTATCTGGCTGAGTGGGAGCATGTGCAGCTGCAGTCGATTAAAACTGAATGAAAGTTTGTCTGCAAAC--AGCTTCTTGGTGGTTCGATGTTATGTAATTTCAAGTGCTATTGCAAAATATTATTCTTATTTACTTTGTGTATGTT-----GAAACAC-TTTAAACGTATCATTCATTTAGTAGGGCAG--------AGAGTATTTTCTCCATCTCCTGTTT------------------------------------------------------TTGCTTT---------------------------------------------------------------AATACACTA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80825749 1287 + 112612857 GCTGTTAATTAAGAAACAATGGG--TAGTCA-AG---CCTATCATGCAAGCTGCCATGTCC-----TGCCAACAAAAATCCTCATCACCAGGCCTT---GCACATT-------------------------CAGAATTA--------------TTGCCCTCCTTCCCTGAGGAATTCTACCTCCTTAGGAAG---TGGGGAT--GTTGGACGGCCCAGAGCAAACTGAGCCTGCTTCAGGTGACCAGCTCCAATTGATCTTTACTTCACAAACTGTCCATCTGAGAATCTCAAGACCTCAGGGTTAGCACAGAAGG----AGCCATCTTCCAGAATTTGTCTTCACTCCAGCCTCCCCC-TAGCTGATGTGTTTTGTTGACAAGACACCCAGC-TGGGTCACCA---TCTTCTGGCCTCTGATGCACACCCATTGATAATAAA-CCACGCTTTACTTGACCTTCCATCCCAAGGAGAAGCCCTGAGATGCTA----TA----GATGACTATTGGCTCACTTACCCTGCATTATTAGCAGAGCTCCCAAAAGAATGAATCTCACTGGCATGGACTGTTG-TGTGCAAA-TGTAGATCTAGGATGATTTTCTGATGTTGAGACACAGAAGCTCT-CAAAGGGCTTATTCAAGGAACAAATTCATG--AC--ATTATAAACTGCTATAAAAATGACCTTAACTATTCTTCTCTCCTACTGAATGAGCTACCCAGCAGAGTACCATGAGTATAAACAGCCCTAGACTGTCAGATCTTATTGTTTTGTTGATGAGCACACATGGTCCTTAAGCATACAGTGTGGGTGGTCTGCTGGCGGGTTATGAATCCAAGCCAAGGGGGTTTGCTTTCTGGTCAGCCTCCACGAGTTATTTGTGAGCACTGGACTAATTGCTTCTAAACTGCACATGTAATGGCCAC-TTCTGGGTTTTTGACAGGAAAATGGCTACTTGCTTATTCTCAGATGTCATAATAAATCTGCCCTTTGCAAACCAGAGACCTCTCATGAACACATGAAT--------GGGTGAGTTTCAGAGGACTTCCCTGGGA-TCCACAGCTCACTGCACAACCTTGCAGGAGTTATTTGACAGGTGTGCCTTCGGCCTGTCCCC---AACATAAGCAAAACACACCTGCCCTTTATCTGGCTGAGTGGGAGCATGTGCAGCTGCAGTCGATTAAAACTGAATGAAAGTTTGTCTGCAAAC--AGCTTCTTGGTGGTTAGATGTTATGTAATTTCAAGTGCTATTGCAAAATATTATTCTTATTTACTTTGTGTATGTT-----GAAACAC-TTTAAACGTATCATTCATTTAGTAGGGCAG--------AGAGTATTTTCTCCATCTCCTGTTT------------------------------------------------------TTGCTTT---------------------------------------------------------------AATACACTA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76874817 1289 + 107442819 gctgTTAATTAAGAAACAATGGG--TAGTCA-AG---CCTATCATGCAAGCTGCCATGTCC-----TGCCAACAAAAATCCTCATCACCAGGCCTT---GCACATT-------------------------CAGAATTA--------------TTGCCCTCCTTCCCTGAGGAATTCTACCTCCTTAGGAAA---TGGGGAT--GTTGGACGGCCCAGAGCAAACTAAGCCTGCTTCAGGTGACCAGCTCCAATTGATCTTTACTTCACAAACTGTCCATCTGAGAATCTCAAGACCTCAGGGTTAGCACAGAAGG----AGCCATCTTCCAGAATTTGTCTTCACTCCAGCCTCGCCC-TAGCTGGTGTGTTTTGTTGACAAGACACCCAGC-TGGGTCACCA---TCTTCTGGCCTCTGATGCACACCCATTGGTAATAAA-CCACGCTTTACTTGACCTTCCATCCCAAGGAGAAGCTCTGAGATGCTG----TA----GATGACTATTGGCTCACTTACCCTGCATTATTAGCAGAGCTCCCAAAAGAATGAATCTCACTGGCATGGACTGTTG-TGTGCAAA-TGTAGATCTAAGATGATTTTCTGATGTTGAGACACAGAAGCTCT-CAAAGGGCTTATTCAAGGAACAAATTCATG--AC--ATTATAAACTGCTATAAAAATGACCTTAACTATTCTTCTCTCCTACTGAATGAGCTACCCAGCAGAGTACCATGAGTGTAAACAGCCCTAGACTGTCAGATCTTATTGTTTTGTTGATGAGCACACATGGTCCTTAAGCATACAGTGTGGGTGGTCTGCTGGCGGGTTATGAATCCAAGCCAAGGGGGTTTGCTTTCTGGTCAGCCTCCACGAGTTATTTGTGAGCACTGGACTAATTGCTTCTAAACTGCACATGTAATGGCCAC-TTCTGGGTTTTTGACAGGAAAATGGCTACTTGCTTATTCTCAGATGTCATAATAAATCTGCCCTTTGCAAACCAGAGACCTCTCATGAACACATGAAT--------GGGTGAGTTTCAGAGGACTTCCCTGGGA-TCCACAGCTCACTGCGCAACCTTGCAGAAGTTATTTGACAGGTGTGCCTTCGGCCTGTCCCC---AACATAAGCAAAACACACCTGCCCTTTATCTGGCTGAGTGGGAGCATGTGCAGCTGCAGTCGATTAAAACTGAATGAAAGTTTGTCTGCAAACAGAGCTTCTTGGTGGTTAGATGTTATGTAATTACAAGTGCTATTgcaaaatattattcttatttactttgtgtatgtt-----gaaacac-TTTAAACGTATCATTCATTTAGTAGGGCAG--------AGAGTATTTTCTCCatctcctgttt------------------------------------------------------ttgtttt---------------------------------------------------------------aatacacTA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81138012 1289 + 108555830 GCTGTTAATTAAGAAACAATGGG--TAGTCA-AG---CCTATCATGCAAGCTGCCATGTCC-----TGCCAACAAAAATCCTCATCACCAGGCCTT---GCACATT-------------------------CAGAATTA--------------TTGCCCTCCTTCCCTGAGGAATTCTACCTCCTTAGGAAG---TGGGGAT--GTTGGACGGCCCAGAGCAAACTGAGCCTGCTTCAGGTGACCAGCTCCAATTGATTTTTACTTCACAAACTGTCCATCTGAGAATCTCAAGACCTCAGGGTTAGCACAGAAGG----AGCCATCTTCCAGAATTTGTCTTCACTCCAGCCTCCCCC-TAGCTGGTGTGTTTAGTTGACAAGACACCCAGC-TGGGTCACCA---TCTTCTGGCCTCTGATGCACACCCATTGGTAATAAA-CCACGCTTTACTTGACCTTCCATCCCAAGGAGAAGCCCTGAGATGCTA----TA----GATGACTATTGGCTCACTTACCCTGCATTATTAGCAGAGCTCCCAAAAGAATGAATCTCACTGGCATGGACTGTTG-TGTGCAAA-TGTAGATCTAAGATGATTTTCTGATGTTGAGACACAGAAGCTCT-CAAAGGACTTATTCAAGGAACAAATTCATG--AC--ATTATAAACTGCTATAAAACTGACCTTAACTATTCTTCTCTCCTACTGAATGAGCTACCCAGCAGAGTACCATGAGTATAAACAGCCCTAGACTGTCAGATCTTATTGTTTTGTTGATGAGCACACATGGTCCTTAAGCATACAGTGTGGGTGGTCTGCTGGTGGGTTATGAATCCAAGCCAAGGGGGTTTGCTTTCTGGTCAGCCTCCACGAGTTATTTGTGAGCACTGGACTAATTGCTTCTAAACTGCACATGTAATGGCCAC-TTCTGAGTTTTTGATAGGAAAATGGCTACTTGCTTATTCTCAGATGTCATAATAAATCTGCCCTTTGCAAACCAGAGACCTCTCATGAACACATGAAT--------AGGTGAGTTTCAGAGGACTTCCCTGGGA-TCCACAGCTCACTGCACAACCTTGCAGAAGTTATTTGACAGGTGTGCCTTCGGCCTGTCCCC---AACATAAGCAAAACACACCTGCCCTTTATCTGGCTGAGTGGGAGCATGTGCAGCTGCAGTCGATTAAAACTGAATGAAAGTTTATCTGCAAACAGAGCTTCTTGGTGGTTAGATGTTATGTAATTACAAGTGCTATTGCAAAATATTATTCTTATTTACTTTGTGTATGTT-----GAAACAC-TTTAAACGTATCATTCATTTAGTAGGGTAG--------AGAGTATTTTCTCCATCTCCTGTTT------------------------------------------------------TTGCTTT---------------------------------------------------------------AATACACTA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111366877 1287 - 210400635 GCTGTTAATTGACAAACAATGGG--TAGTCA-AG---CCTATCATGCAAGCCTCCATGTCC-----TGCCAACAAAAATCCTCATCCCCAGGCCTT---GCACACT-------------------------CAGAGATA--------------TCACCCTCCGTCCCTTAGGAATTCTG---TTTTAGGAAG---TGGGGAC--GTTGGATGGCCCAGAGCAAACCCAGACTGCTTCAGGTGACCTGCTCCAGTTGATCTTTACTTCTCAAACTGTCCATCTGAAAATCCCAGGACCTCAGGGTCAATACAGAGGGAGCTAGCCATCTTTCATAATTCGTCTTCACTCAAGCCTCCCGC-TAGCTGGTGTGTTTTGTTGTCAAGGCACCCAGC-TGGGTCACCG---TCTCCTGGCCTCTGATGCACACCCATTGGTAATAAA-CCATGCTTTACTTGACCCTCCACCCCAAGGAGAAGCCATGAGATGCTC----TA----GATGACTACTGGCTCACTTACCCTGCATCATGAGCAGCGCTTCTAAAAGAATGAATGTCACTGGCATAGACTGTTG-TGTACAAA-TGTAAATCTAGGATGATTTTCTGATGTTAAGACACAGAAGCTCT-CAAAGGGCTTATTCAAGGAATAAATTCATG--AC--ATTATAAACTGCTATAAGAATGACATTAACTATTCTTCTCTCCTACTGAGCAAGCCACACAGCAGAGTACCATGAGCATAAACAGCCCTTGACTGTCAGATCTTATTGTTTTGTTGATAAGCGCACATGGTCCTTGAGCATACAGCGTGGGTGGTCTGCTGGCGGGTTAGGAATCAAAGCCAAAAGGGTTTGCTTTGTGGTCAGCCTCCATGAATTATTTGTGAGCACTGGACTAATTGCTTCTAAACTGCACATGTAATGGCCAC-TTCTGGGTTTTTGACAGAAAAATGGCTACTTGTTTATTCTCAGATGTCATAATAAATCTGCCCTTTGCAAACCAGAAACCCAGCATGGACACATGAAT--------GTGTGAGTTTCAGCGGACTTCCCTGGGT-TGCACAGCTCACTGCTCAACCTTGCAGAAGTTGTTTGACAGGTATGCCTTCGGCCTGTCCCC---AACATAAGCAAAACACACCTGCCCTTTATCTGGCTGAGTGGGAGCATGTGCAGCTGCAATAGATTAAAAC----TGAAAGTTTGTCTGCAAACAGAGCTGCTTGGTAGTGAGATGTTATGTAATTACAAGTGTCATTGCAAAATATCATTTTTATTTACTTTGTGTATGTT-----GAAACACTTTTAAACGTATCATTCATTTTGTAGGGCCA--------AGAATATTTTCTCCGTCTCCTGTTT------------------------------------------------------TTGCTTT---------------------------------------------------------------AATACACTA i calJac3.chr1 C 0 C 0 s mm10.chr19 38028906 1399 - 61431566 ACTGCTGATTAATAGACAATGAGTATAGTTAGAG---TCTCTT-------CCTCTGTGTCCTCCCATGTCAACAAAAGTCTTCAT--CCAAGTCTCTGGGCCCAGT------------------------GCAGAAT--------------------CCTCCTTTTACTAGGAAGTCTACCT--TGAGGGAAGACTGGAGGTAAGTTGAATGGCCGGTAGCAAACCTACCCTACCTCAAGT--CCAATTATCACTGCTCCTAAAATTCCACATTCTACATAT---------------TCAGAGTTGACACACAAGT----CACCATCTTCCGGATTTAGACATCACTGCATCTACAGACGTGGCTGGTTTGTGTTGTAATCACAGCA--CAGCATGGATCACCACCTCCTCCTGCATTCTGACATCCACTCATGGCTAATAAACCCATGCTTTAGTTCACTGCCCTCAC--AACAGAAGTCTCGAAATGCCACAAGCA----GGTGACCACCGGCCCACTCACCCTCCCTAACAAGTAGACTTAGAGAAAACACAAACCCTGCTGGCTCAGACAGTTACTCTGGACA-CATGGATGTGGTGTAGA-----------GAGACACAGAAGCTCT-CAAAGGCCTCATTCAAAGAACAAATGCATAACAC--ATTCCAACCAGCTATAAGAATGACATTAAGTATTCCTCTCTCCCGCTGAGAGAGC-ACCCAACAGAGTGTCATGAATATAAACAGCCGGAGAATTGCAGATCTTATTGTGCTGTTGATGAGCACACATGGTTCTTGAGCGCGCAGTGTGGGTGGTCTGCTGAGGGGTTATGGATCAAAGCCAC-GGGTTTTCCTCTTTGCTCAGGCTCAGCCGGTTGTTTCTGAGCACTTGACTAATTGCTCGTGAGCTGCACATTTTATGGCCCC-TTCTGAGATTTTGACAAGAAAATGGCTACTTGTTTACTCTCAGTTGTCATAATAAATCTGTCCTTTACAAACCGGAGAGCCAGCATGGCCACGAGGAT--------GGGTGAGTTTCGGAGGACTTCCTGGGAACTTCACAGCTCACTGGGCAATCTTGAGGGAGTCATGAGGCA-GTGTGTCTCCAGCCTCTACCAGAGGACACAAGCTAAGTGCACCTGCCCTTGGTCTGCCAGAGTGGGAATCTGTGCAGCTTCGGAGGATTAAAACTGAAGCAAAGTCTGTCTACAGACAGAGTTCCCTAGTGCCCTG-CGTTATGTAATTGTGAGCCTTATTGC-CAATGTCACTCATATTTACCCCATATTTATTTTGCAGAAGCAT-TTTAAACTCAACATTCATTCTGCAAGGCAGAAAGGTGAAGAGTATTTCCTCAAGGTCCTGTTTAGGGCTTGGATATCCTGTAGCGATTGGAGTTCTGTTTGTTTGGATTTCCTTGTCTTGTTTTTTTCCTGTAGGGATGAAAATTAAACTGTAGGCCTCACACATGCTAGGTCAGTACTACTCTGTAAATAAGCTA i mm10.chr19 C 0 I 114 s canFam3.chr1 35264298 1320 - 122678785 GCTGTTGATTAAGAAACAATGTA--TAGTTG-AGTTTCCCATCATACAACCCACCAGGTCC-----CACT-----AAATCCTCATCTCCAACCCCC---ACACACTCCTATCTCTAGGCCTAAGATATCTCCAGAATTTCTAAGAGATGGATCTTGTCCTCCTTTCCTTAGGAATTCTGGGTTCTTAGAAAG---TGGGAGG--TTGGGATGGCCCAGAGTAAACCCAGCCTGGGTCAAGTCTTCAGCTCCAGCTGATCTTTTCCTTTAAGACTGTACTTCTGGGAATCTCAAGACCTCTAAGGTAGCACAGAGGG----AGCCACCTTACAGAACTAGTCTTCACTCCAGCCTCCACT-TAGCTAGTGTGCTTTGTAGTCCAGGCCAAGATC-TGGGTCACCA---TCTCTTGGCTTCTGATGCATGCCCATTGGTAATAAA-CCATGCTTT------CCTTTTCCTGTATAGAGAAGCTCTGAAATGCTG----TAAACTGGTGGTTATTAGCCCACTTGCCCTCCATTGTTAGCAGAACTCCTGAGAG--TGACTCCCCTTGGCATAGACTGCTA-TGTACAACTTATGTATCTAAGAGAAGTTTGTGACATTGGGACACAGAAGCTCTCCAAAGGGCTTATTCAA-GAACAAATTTATA--ACATATTACAAGCTGCTGTGAGAATGGCATGAACTACT-TCCTCTCTTACCAAACAAGCCACCCAGCCAAGTGCCATGAATATAAACAGCCCCAGAATTTTAGATCTTATTGTTTTGTTGATGCGCACACATGACCCTGGAGCATGCAGTGTGGGTGGTCTGCTGGGAGGTGATGAATCAAAGCCAAGGGGTTTTGTTCTCTGGTCAGCCTCTGCGTGTTATTTGTGAGCACTTGAGTAATT-CTCCTACACTGCACATTTAATGGCCACTTTTTGGGTTTTTGACAGAAAAATGGCTACTTGTTTATTCTCAGATGCCATAGTACATCTGCCCTTTCTCACTCAGGACCCCAGCATGGTCATGTGAATTGCTTGTGGGGGCAGATTCAGAGGCCCTCTTCCTAT-TCCGCAGCCCACTGCAGGACCTCAAGGAAGTC-TTGGACAGGTGTGCTTTTGGCCTCCCCCT---AACACAAATAAAACACACCTTCCCTTTATCTGGCTGAGTGGGAACATATACAGCTGCAGAAGATTAAACCC--ATGAACATTTGTCTGCAAAAAGACCTTCTTGGTTGTCAGATGTTATGCAATTACAAGTGTTATTGCTAAAT---ATTCTTACTT------TGTATGTT-----GAAACAT-TTAAAATTTATCATGCATTTGGTAGGACAG--------AGAATATTTTCCTAGTCTCCTGTTT------------------------------------------------------TTGCTTT---------------------------------------------------------------AATACACTA i canFam3.chr1 C 0 C 0 a score=1313833.000000 s hg38.chr9_GL383541v1_alt 55972 448 + 171286 TTGGTTATTTTAAATGACCAAACCATTCATGCCTTTATGA--CCATTCAAATAATACAGAATATGGGGGATAAATGACTAATTAATAGATTAATAGTCTTCCTC--------TTCCCATCTCCTCGAGGTAGCTAATATTATCAAAGCAGCGTGCTGCATG--CATCTTTCCACAATCACTCTATGTATGTAGAAACAT-------TATTTTTAAAGCTTATGAAAGTGTACCTATG-TTTTTATATGCTGTAGCACTATACATGTATGTGTACATATATCCACACACATTCATGCATGTGAC--ATTTCCAAG-TCTATAGAGATCTGCACATTCATACATGTGACATTTCCAGgtcaacagcgatctaactcattattttaaatagttgcctaacagtctgtaatatggatcataatctatttaatcattttcctgttgctggaaatttttatttttattttttacCTT s panTro4.chr9 68621686 445 + 137840987 TTGGTTATTTTAAATGACCAAACCATTCATGCCTTTATGA--CCATTCAAATAATACAGAATATGGGGGATAAATGACTAATTAATAGATTAATAGTCTTCCTC--------TTCCCATCTCCTCGAGGTAGCTAATATTATCAAAGCAGTGTGCTGCATG--CATCTTTCCACAATCACTCTATGTATGTAGAAACAT-------TATTTTTAAAGCTTATGAAAGTGTACCTATG-TTTTTATATGCTGTAGCACTATACATGTATGTGTACATATATCCACACACATTCATGCATGTGAC--ATTTCCAAG-TCTATAGAGATCTGCacattcatacatgtgacatttccaggtcaacagagatctaactcattattttaaatagttgcctaacagtctgtaatatggatcataatctatttaat---tttccggttgctggaaatttttatttttattttttACCTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64777365 448 + 135191526 TTGGTTATTTTAAATGACCAAACTGTTCATGCCTTTATGA--CCATTCAAATAATACAGAATATGGGGGATAAATGACTAATTAATAGATTAATAGTCTTCCTC--------TTCCCATCTCCTTGAGGTAGCTAATATTATCAAAGCAGCTTGCTGCATG--CATCTTTCCACAATCACTCTATGTATGTAGAAACAT-------TATTTTTAAAGCTTATGAAAGTGTACATATG-TTTTTATATGCTGTAGCACTATACATGTATGAGTACATATATCCACACACATTCATACATGTGAC--ATTTCCAAG-TCGATAGAAATCTGTACATTCATACATGTGACATctccaagtctacagagatctaactcattattttaaatagttgcctaacagtctgtaatatggatcataatctatttaatcattttcctgttgctggaaatttatatttttattttttacCTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57816194 446 - 122973662 TTGGTTATTTTAAATGACCAAACTGTTCATGCCTTTATGA--CCATTCAAATAATACAGAATATGGGGGATAAATGACTAATTAATAGATTAATAGTCTTCCTC--------TTCCCATCTCCTTGAGGTAGCTAATATTATCAAAGCAGCGTGCTGCATG--CATCTTTCCACAATCACTCTGTGTATGTAGAAACAT-------TATTTTTAAAGCTTATGAAAGTGTACATATG--TTTTATATGCCGTAGCACTATACATGTATGTGTGCATATATCCACACACATTCATACATGTGAC--ATTTCCAAG-TCAGTAGAGATCTACACATTCATACATGTGACATTTCCAagtcaacagagatctaactcattattttaaatagttgcctaacagtctgtaatatggatcataatctatgtaatcattttcctgttgctgg-aatttttatttttattttttacCTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79746849 403 + 112192347 TTGGTTATTTTAAATGACCAAACTGTTCATGCTTTTATGA--CCACTCAAATAATACAGAATATGGGGGATAAATGACTAATTAATAGATTAATAGTCTTCCTC--------TTCCCATTTCCTTGAGGTAGCTAATGTTATCAAAGCAGCGTGCCACATG--CATCTTTCCACAATCACTCTATGTATGCAGAAACAT-------TATTTTTAAAGCTTATGAAAGTGTACATATG-TTTTTATGTGCTGTAGCACTATACATGTATGTGCACATATATACACACACATTCATACATGTGAC--Atttccaag-tcaataga-----------------------------------------gatctaactcattatttttaatagttttctaacagtctgtaatatggatcataatc----taatcattttcctattgctggaaatttttatttttattttttACCTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80827036 403 + 112612857 TTGGTTATTTTAAATGACCAAACTGTTCATGCTTTTATGA--CCACTCAAATAATACAGAATATGGGGGATAAATGACTAATTAATAGATTAATAGTCTTCCTC--------TTCCCATTTCCTTGAGGTAGCTAATGTTATCAAAGCAGCGTGCCACATG--CATCTTTCCACAATCACTCTATGTATGCAGAAACAT-------TATTTTTAAAGCTTATGAAAGTGTACATATG-TTTTTATGTGCTGTAGCACTATACATGTATGTGCACATATATACACACACATTCATACATGTGAC--ATTTCCAAG-TCAATAGA-----------------------------------------GATCTAACTCATTATTTTTAATAGTTTTCTAACAGTCTGTAATATGGATCATAATC----TAATCATTTTCCTATTGCTGGAAATTTTTATTTTTATTTTTTACCTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76876106 405 + 107442819 TTGGTTATTTTAAATGACCAAACTGTTCATGCTTTTGTGACCCCACTCAAATAATACAGAATATGGGGGATAAATGACTAATTAATAGATTAATAGTCTTCCTC--------TTCCCATTTCCTTGAGGTAGCTAATGTTATCAAAGCAGGGTGCCACATG--CATCTTTCCACAATCACTCTATGTAtgcagaaacat-------tatttttaaagcttatgAAAGTGTACATATG-TTTTTATGTGCTGTAGCACTATacatgtatgtgcacatatatacacacacattcatacatgtGAC--ATTTCCAAG-TCAATAGA-----------------------------------------GATctaactcattatttttaatagttttctaaCAGTCTGTAATATGGATCATAATC----TAATCATTTTCCTATtgctggaaatttttatttttattttttacctt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81139301 404 + 108555830 TTGGTTATTTTAAATGACTAAACTGTTCATGCTTTTATGA--CCACTCAAATAATACAGAATATGGGGG-TAAATGACTAATTAATAGATTAATAGTCTTCCTC--------TTCCCATTTCCTTGAGGTAGCTAATGTTATCAAAGCAACGTACCACATG--CATCTTTCCACAATCACTCTATGTATACAGAAACAT-------TATTTTTAAAGCTTATGAAAGTGTACATATG-TTTTTATGTGCTGTAGCACTATACATGTATGTGCacatatat--acacacattcatacatGTGAC--ATTTCCAag-tcaataga-----------------------------------------gatctaactcattatttttaatagttgcctaacagtctgtaatatggatcataatctatttaatcaatttcttattgctggaaatttttatttttattttttACCTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111368164 397 - 210400635 ATGGTTATTTTAAATGACCAGACCATTCATGATTTTATGG--TTATTCAACTAATACAGAATATGGGGTATGAATGACTAATTAATAAATCAATAGTCTTCCTC--------ATCTCATCTCCTCGAGGTAGCTAATGTTACCAAAGCAGTGCTCTGTATG--CATCTTTCCACAA----TGTATATATGTAGAGACAT-------TCTTTTTAAAGCTTATGAAAGTGTACATATG-TTTTTATATGCTGTAGCACTATACATGTCTGTGTACAGATATACACACACA-TCATACATAGGAC--ATTTCCAAG-TTAGTAGA-----------------------------------------GATCTGCCTCATTGTTTTGCAGAGATGCCTAACAGTCTGTAATATGGATCATAATC-----GATTATTTTTCTATTGCTGGAAATGTTTATTTTTATTTTCTACCTT i calJac3.chr1 C 0 C 0 s mm10.chr19 38030419 356 - 61431566 TTGGTTATTTTAAATGGCCAG-----TCAAAAACCTATAA--AAACTCAAGTAA-----AGTGTGAGTATGCACAGATGAGTTGACAGGCT--TCTTTGTCCTG--------TTTCCATTCCTTTGAGGTGAATGATAT----------------------------TTCCCTCAACTGCTCAATATGCATAAAAGCATAGACTCCTAGTTGTATAATTTGTAAATGTACACTATAG-CCTTTATATGCCGTAGTG----------------AAAAGTACATATCCACACTCATGCATATGGCATATCTCTAAGTTCTATATA----------------------------------------TGATC-ACCTCATTCTTTTTAGTAGTCAACTAAGAGTCAATAAT-------ATAATCTACTTAGGCATCTCTCTATTGCCAGGGATCCCCCTCTCCACTTCTCCCTAC i mm10.chr19 I 114 C 0 s canFam3.chr1 35265618 379 - 122678785 TGGATTATGCTGAATGATCAAAACATTCATGCTGTTGTGA--TACTTCGCGTCATATAGAA---ATAATACAAATTACTAATCAA----------GTCTTCCTCATTTTCTTATCCCATCTCCTTGCGGGAACCAATGTTATTGGTGTAATGCACTGCATGAACTTTTTTCCACAATTCCTCTATGCATCTAGAAACATAAATTCTTATTTTTGTAATTTATGAAAGCACAGATATGCCTTCCATATGC---------------------------ATATATGTACACACTCATACATATG-T--ATTTCCAAG-TCAatata-----------------------------------------gagatacatcattcttttcaatagttgcctaacagtccataatgtggactagaatc----taatcatttccccattgctggccactgcagtttttccTCTGTTCTT- i canFam3.chr1 C 0 I 394 a score=1317491.000000 s hg38.chr9_GL383541v1_alt 56420 332 + 171286 AA----------GGTCC------------------TCTGTTAAGAAAAAA--GGAAGAAAAAAGTGCCTTGCTCTGCAGTGGTGGGGTTTGCAGGGGCAGTTGGTTGGGCCGTGTGTGTATTTGGGAGTATTGTTTGTTTACACAGTCAGTTTCCTAGGTTTCCATGTGTCATTGCCAATCTGTGTTGAGTTAGCGGCC-AACAGCTCTTCCTAAACCACGTCTTGTGGCCAAGTGCAAACTGAACATCGAGGAATGGAAAATATTGCAGAGTTTCTAAATGGTCAGGAAGG--TTTTAATCCCCAAACAGGTCTAGTTCCTATTT---TGTGAAAAACAGTGTGGAAACACCTAATTTTTAAAAATC s panTro4.chr9 68622131 332 + 137840987 AA----------GGTCC------------------TCTGTTAAGAAAAAA--GGAAGAAAAAAGTGCCTTGCTCTGCAGTGGTGGTGTTTGCAGGGGCAGTTGGTTGGGTTGCGTGTGTATTTGGGAGTATTGTTTGTTTACACAGTCAGTTTCCTAGGTTTCCATGTGTCATTGCCAATCTGTGTTGAGTTAGCGGCC-AACAGCTCTTCCTAAACCACGTCTTGTGGCCAAGTGCAAACTGAACATCGAGGAATGGAAAATATTGCAGAGTTTCTAAATGGTCAGGAAGG--TTTTAATCCCCAAACAGGTCTAGTTCCTATTT---TGTGAAAAACAGTGTGGAAACCCCTAATTTTTAAAAATC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64777813 331 + 135191526 AA----------GGCCC------------------ACTGTTAAGAAAAAA--GGAAGAAAAAAGTGCCTTGCTCTGCAGTGGTGGTGTTTGCA-GGGCAGTTGGTCGGGCTGCGTGTGTATTTGGGAGTATTGTTTGTTTACACAGTCAGTCTCCTAGGTTTCCATGTGTCCTTGCCAATCTGTGTTGAGTTGGCGGCC-AACAGCTCTTCCTAAACCACGTCTTGTGGCCAAATGCAAACTGAACATCGAGGAATGGAAAATATTGCAGAGTTTCTAAATGGTCAGGAAGG--TTTTAATCCCCAGACAGGTCTAGTTCCTATTT---TGTGAAAAACAGTGTGGAAACACCTAATTTTTAAAAATC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57816640 332 - 122973662 AA----------GGCCC------------------TCTGTTAAGAAAAAA--GGAAGAAAAAAGTGCCTTGCTCTGCAGTGGTGGTGTTTGTAAGGGCAGTTGGTTGGGCTGCGTGTGTATTTGGGAGTATTGTTTGTTTACACAGTCAGTTTCCTAGGTTTCCATGTGTCCTTGCCAATCTGTGTTGAGTTGGTGGCC-AACAGCTCTTCCTAAACCATGTCTTGTGGCCAAATGCAAACTGAACATCGAGGAATGGAAAATATTGCAGAGCTTCTAAATGGTCAGGAAGG--TTTTAATCCCCAAACAGGTCTAGTTCCTATTT---TGTGAAAAACAGTGTGGAAACACTTAATTTTTAAAAATC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79747252 333 + 112192347 AA----------GGCCC------------------TTTGTTAAGAAAAAAAGGAAGAAAAAAAGTGCCTTGCTCTGCAGTGGTGGTGTTTGCAGGGGCATTTGGTTGGGCTGCTTGTGTATTTGGGAGTATTGTTTGTTTACACAGTCAGTTTCCTAGGTTTCCATGTGTCCTTGCCAATCTGTG-TGAGTTGGCGGCC-AACAGCTCTTCCTAAACCACGTCTTGTGGCCAAATGCAAACTGAACATCGAGGAATGGAAAATATTGCAAAGTTTCTAAATGGTCAGGAAGA--TTTTAATCCCAAAACAGGTCTAGTTCCTATTT---TGTGAAAAACAGTGTGGAAACACCTAATTTTTAAAAATT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80827439 333 + 112612857 AA----------GGCCC------------------TTTGTTAAGAAAAAAAGGAAGAAAAAAAGTGCCTTGCTCTGCAGTGGTGGTGTTTGCAGGGGCATTTGGTTGGGCTGCTTGTGTATTTGGGAGTATTGTTTGTTTACACAGTCAGTTTCCTAGGTTTCCATGTGTCCTTGCCAATCTGTG-TGAGTTGGCGGCC-AACAGCTCTTCCTAAACCACGTCTTGTGGCCAAATGCAAACTGAACATCGAGGAATGGAAAATATTGCAAAGTTTCTAAATGGTCAGGAAGA--TTTTAATCCCAAAACAGGTCTAGTTCCTATTT---TGTGAAAAACAGTGTGGAAACACCTAATTTTTAAAAATT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76876511 333 + 107442819 aa----------ggccc------------------tttgttaagaaaaaaaggaagaaaaaaagtgccTTGCTCTGCAGTGGTGGTGTTTGCAGGGGCATTTGGTTGGGCTGCTTGTGTATTTGGGAGTATTGTTTGTTTACACAGTCAGTTTCCTAGGTTTCCATGTGTCCTTGCCAATCTGTG-TGAGTTGGCGGCC-AACAGCTCTTCCTAAACCACGTCTTGTGGCCAAATGCAAACTGAACATCGAGGAATGGAAAATATTGCAAAGTTTCTGAATGGTCAGGAAGA--TTTTAATCCCAAAACAGGTCTAGTTCCTATtt---tgtgaaaaacagtgtggaaacacctaatttttaaaaatt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81139705 333 + 108555830 AA----------GGCCC------------------TTTGTTAAGAAAAAAAGGAAGAAAAAAAGTGCCTTGCTCTGCAGTGGTGGTGTTTGCAGGGGCATTTGGTTGGGCTGCTTGTGTATTTGGGAGTATTGTTTGTTTACACAGTCAGTTTCCTAGGTTTCCATGTGTCCTTGCCAATCTGTG-TGAGTTGGCGGCC-AACAGCTCTTCCTAAACCACGTCTTGTGGCCAAATGCAAACTGAACATCGAGGAATGGAAAATATTGCAAAGTTTCTAAATGGTCAGGAAGA--TTTTAATCCCAAAACAGGTCTAGTTCCTATTT---TGTGAAAAACAGTGTGGAAACACCTAATTTTTAAAAATC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111368561 324 - 210400635 AA----------GGCCC------------------TTTATTAAGAAAAAG------GAAAAAAGTGCCTTGCTC-ACAGTGGTAGTGTTTGCAGGGGCAGTCGGTTGGGCTGTGTGCATGTTTGGGAGGATTGTTTATTTACACAGCCAGTTTCCTAGGTTTCCATGTAGCCTTGCCAATCTC---TGAGTTGGCAGCC-AGCAGCTCTTCCTAAACCATGTCTTGTGGTTAAATGCAAACTGAACATCGAGGAATGGAAAATATTGCAAAGTTTCTAAACGATCAGGAAGG--TTTTAATCCCAAAACAGGTCCAGTTCCTATTT---TGTGAAAAACAGTGTGGTAACACCTAATTTTTAAAAACC i calJac3.chr1 C 0 C 0 s mm10.chr19 38030775 329 - 61431566 AACCTCTATCCCGTCCCCTCTCCTGCTCCTTTCATTTTATTCAGCACAAA-------------------------GCGGCAGAGAAGCTTGCAG----ACTCCGTTGGATTGCATGAGCATTTGGGAAGATTGTTTGTTTACACAGTCCGTTCCCTGGGTTTCCCTGTATCACTGCCAATCCA---TGACTTGGAGGCC-AAAAG------CTAAACTGTAGCTTGTGGCCAGATGCAGATTTAACATCGAGGAATGGAAAATCTTGCAAAGTTTCTAAATAGTCAGGAAGGTTTTTTAACTCTAAATCAGGTCTAATTTCTATTTAAAAAAAAAAAAAAGCAGGGAATCATCTAATTTTTAACAATC i mm10.chr19 C 0 I 106 s canFam3.chr1 35266391 330 - 122678785 AA----------GGTCC------------------TTTATTTTGAAAAAG--GGAAGAGAAAAATGCCTTGCTCTACATTGGTGGGGC-TGCTGGGGTAGTTGGTCTGGTTGCATGAGTATTTGGGAATATTGTTTGTTTACACGGCCAGTTTCCTAGGTTTCCATGTGTCATTGCCAATCTGTG-TGACTCGCCAGCCAAACAGCTCTTCCTACACTGTGTCTTGTGGCCAAACACCAAATGAACGTCGAGGAATGGAAAATCTTGCGAAGTTTCTAAATGGTC-GGAAGG--TTTTAATTCCAAGACAGGTCTAGTTTCTGTTT---TGTGATAAAGAGTGTGGAAACACCTAATTTTAAAGACTT i canFam3.chr1 I 394 C 0 a score=1973695.000000 s hg38.chr9_GL383541v1_alt 56752 581 + 171286 -------------------------------------------CTCCAC----TGTCAAATGAAGAGAGATTTGGGGTTACTGGTCCGGTTAGGTGCCCTGA--CTCAGGCATCCCTGGAACATAATActtccacagtagactgtcagctcactgaggtaggccctttgatgtgtttttgttttctgcctggcataaagtaggcacttaataataaatgtttgttgaGCCAAATGGTTTACATAGGGCTGAAAATTACCTTTTTTTG--TTTGATTTTTGAGAGTCTGGCTGAAGAGAGACTGTCAGCTGTTTGTTTGACACAAAGGAGAGAGCTTGATGGGACAGGGAAGGGGAAGAAGGGCAGGCCAGGAGTAAGATTTAATTTGGGAGTAGGCAGGGAAGAGGAAAATGAGGTAATGTGGTTTGGTCTAGTGATAGATGATAAGTCAGATCTTGAGGATGTTTATCTTGGGCTCAAGAGCAATGGAAAGCCACAAGAACCGTCCTGG--AGGGGGAGGGAATGTCCAAATCTGTGAGTGGAG-AGCTGACTTAGGCTTTGAATGTGTCATTGTAATTGATGACCAGGGAGGCACTGTCCTCTCCTGCCCCTTGCTTGGGATGAGTTTGTTAT s panTro4.chr9 68622463 579 + 137840987 -------------------------------------------CTCCAC----TGTCAAATGAAGAGAGATTTGGGGTTACTGGTCCGGTTAGGTGCCCTGA--CTCAGGCATCCCTGGAACATAATActtccacagtagactgtcagctcactgaggtaggccctttgatgtgtttt-gttttctgcctggcataaagtaggcacttaataataaatgtttgttgaGCCAAATGGTTTACATAGGGCTGAAAATTACCTTTTTT-G--TTTGATTTTTGAGAGTCTGGCTGAAGAGAGACTGTCAGCTGTTTGTTTGACGCAAAGGAGAGAGCTTGATGGGACAGGGAAGGGGAAGAAGGGCAGGCCAGGAGTAAGATTTAATTTGGGAGTAGGCAGGGAAGAGGAAAATGAGGTAATGTGGTTTGGTCTAGTGATAGATGCTAAGTCAGATCTTGAGGATGTTTATCTTGGGCTCAAGAGCAATGGAAAGCCACAAGAGCCGTCCTGG--AGGGGGAGGGAATGTCCAAATCTGTGAGTGGAG-AGCTGACTTAGGCTTCGAATGTGTCATTGTAATTGATGACCAGGGAGGCACTGTCCTCTCCTGCCCCTTGCTTGGGATGAGTTTGTTAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64778144 580 + 135191526 -------------------------------------------CTCCAC----TGTCAAATGAAGAGAGATTTGGGGTTACTGGTCTGGTTAGGTGCCCTAA--CTCAGGCATCCCTGGAACATAATActtccacagtagactgtcagctcactgaggtaggccctttgatatgtttttgttttctgcctggcataaagtaggcactttataataaatgtttgttgaGCCAAACGGTTTACATAGGGCTGAAAATTACCTTTTTT-G--TTTGATTTTTGAGAGTCTGGCTGAAGAGGGACTGTCAGCTGTTTGTTTGATGCAAAGGAGAGAGCTTGATGGGACAGGGAAGGGGAAGAAGGGCAGGCCAGGAGTCAGATTTAATTTGGGAGTAGGCAGGGAAGAGGAAAATGAGGTAATGTGGTTTGGTCTAGTGATAGATGCTAAGTCAGATCTTGAGGATGTTTATCTTGGGCTCAAGAGCAATGGAAAGCCACAAGAACCGTCCTGG--AGGGGGAGGGAATGTCCAAATCTGTGAGTGGAG-AGCTGACTTAGGCTTCAAATGTGTCATTGTAATTGATGACCAGGGAGGCACTGTCCTCTCTTGCCGCTTGTTTGGGATGAGTTTGTTAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57816972 578 - 122973662 -------------------------------------------CTCCAC----TGTCAAATGAAGAGAGATTTGGGGTTACTGGTCCAGTTAGGTGCCCTGA--CTCAGGCATCCCTGGAACATAATActtccacagtagactatcagctcactgaggtgggccctttgatgtgtttttgttttctgcctggcataaagtaggcactttataataaatgtttgttgaGCCAAATGGTTTACATAGGGCTGAAAATTACCTTTTTTTG--TTTGATTTTTGAGAGTCTGGCTGAAGAGGGACTGTCAGCTGTTTGTTCAATGCAAAGGAGAGAGCTTGATGGGACAGGGATGGG---GAAGGGCAGGCCAGGAGTAAGATTTAATTTGGGAGTAGGCAGGGAAGAGGAAAATGAGGTAATGTGGTTTGGTCTAGTGATAGATGCTAAGTCAGATCTTGAGGATGTTTATCTTGGGCTCAAGAGCAATGGAAAGCCACAAGAACCATCCTGG--AGGGGGAGGGAATGTCCAAATCTGTGAGTGGAG-AGCTGACTTAGGCTTTGAATGTGTCATTGTAATTGATAACCAGGGAGGCACTGTCCTCTCCTGCCCCCTGCTTGGGATGAGTTTGTTAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79747585 579 + 112192347 -------------------------------------------CTCCAC----TGTCAAATGAAGAGAGATTTGGGGTTACTGGTCCGGTTAGGTGCCCTGA--CTGAGGCATCCCTGGAACATAATGcttccacagtagactgtcagctcactgaggtaggccctttgatgtgtttttgttttctgcctggcataaagtaggccctttataataaatgtttgttgaGCCAAATGGTTTACATAGGGCTGAAAAGTACCTTTTTTTGTTTTTGATTTTTGAGACTCTGGCTGAAGAGGGACTGTCAGATGTTTGTTTGATGCAAAGGAGAGAACTTGATGGGACAGGGAAGGG---GAAGGGCAGGCCAGGAGTAAGATTTAATTTGAGCGTAGGCAGGGACCAGGAAAATGAGGTAATGTGGTTTGGTCTAGTGATAGATGCTAAGTCAGATCTTGAGGATGTTTATCTTGGGCTCAAGAGCAATGGAAAGCCACAAGAACCATCCTGG--AGGGGGAGGGAATATCCAAATCTGTGAGTGGAG-AGCTGACTTGGGCTTCAAATGTGTCATTGTGATTGATGACCAGGGAGGCACTGTCCTCTCCC-CACCCTGCATGGGATGAGTTTGTTAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80827772 579 + 112612857 -------------------------------------------CTCCAC----TGTCAAATGAAGAGAGATTTGGGGTTACTGGTCCGGTTAGGTGCCCTGA--CTGAGGCATCCCTGGAACATAATGcttccacagtagactgtcagctcactgaggtaggccctttgatgtgtttttgttttctgcctggcataaagtaggccctttataataaatgtttgttgaGCCAAATGGTTTACATAGGGCTGAAAAGTACCTTTTTTTGTTTTTGATTTTTGAGACTCTGGCTGAAGAGGGACTGTCAGATGTTTGTTTGATGCAAAGGAGAGAACTTGATGGGACAGGGAAGGG---GAAGGGCAGGCCAGGAGTAAGATTTAATTTGAGCGTAGGCAGGGACCAGGAAAATGAGGTAATGTGGTTTGGTCTAGTGATAGATGCTAAGTCAGATCTTGAGGATGTTTATCTTGGGCTCAAGAGCAATGGAAAGCCACAAGAACCATCCTGG--AGGGGGAGGGAATATCCAAATCTGTGAGTGGAG-AGCTGACTTGGGCTTCAAATGTGTCATTGTGATTGATGACCAGGGAGGCACTGTCCTCTCCC-CACCCTGCATGGGATGAGTTTGTTAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76876844 579 + 107442819 -------------------------------------------ctccac----tGTCAAATGAAGAGAGATTTGGGGTTACTGGTCCGGTTAGGTGCCCTGA--CTGAGGCATCCCTGGAACATAATGCTTCCACAGCAGACTGTCAGCTCACTGAGGTAGGCCCtttgatgtgtttttgttttctgcctgGCATAAAGTAGGccctttataataaatgtttgttgagccaAATGGTTTACATAGGGCTGAAAagtacctttttttgtttttgatttttgagactcTGGCTGAAGAGGGACTGTCAGATGTTTGTTTGATGCAAAGGAGAGAACTTGATGggacagggaaggg---gaagggcagGCCAGGAGTAAGATTTAATTTGAGCGTAGGCAGGGACCAGGAAAATGAGGTAATGTGGTTTGGTCTAGTGATAGATGCTAAGTCAGATCTTGAGGATGTTTATCTTGGGCTCAAGAGCAATGGAAAGCCACAAGAACCATCCTGG--AGGGGGAGGGAATATCCAAATCTGTGAGTGGAG-AGCTGACTTGGGCTTCAAATGTGTCATTGTGATTGATGACCAGGGAGGCACTGTCCTCTCCC-CACCCTGCATGGGATGAGTTTGTTAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81140038 579 + 108555830 -------------------------------------------CTCCGC----TGTCAAATGAAGAGAGATTTGGGGTTACTGGTCCGGTTAGGTGCCCTGA--CTGAGGCATCCCTGGAACATAATGcttccacagtagactgtcagctcactgaggtaggccctttaatgtatttttgttttctgcctggcgtaaagtaggccctttataataaatgtttgttgaGCCAAATGGTTTACATAGGGTTGAAAAGTACCTTTTTTTGTTTTTGATTTTTGAGACTCTGGCTGAAGAGGGACTGTCAGATGTTTGTTTGATGCAAAGGAGAGAACTTGATGGGACAGGGAAGGA---GAAGGGCAGGCCAGGAGTAAGATTTAATTTGGGAGTAGGCAGGGACCAGGAAAATGAGGTAATGTGGTTTGGTCTAGTGATAGATGCTAAGTCAGATCTTGAGGATGTTTATCTTGGGCTCAAGAGCAATGGAAAGCCACAAGAACCATCCTGG--AGGGGGAGGGAATATCCAAATCTGTGAGTGGAG-AGCTGACTTGGGCTTCAAATGTGTCATTGTGATTGATGACCAGGGAGGCACTGTCCTCTCCC-CACCCTGCATGGGATGAGTTTGTTAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111368885 568 - 210400635 -------------------------------------------CTCCAC----TGTCAAATGAAGAGAGATTTGGGGTTACTGGTCCGGTTAGGTGCCCTGA--CTCAGGCATCGCGGGAACATAATActtctacagtagacggtcagcttactgagccaggcgctttgatgtgtttctgtattctgcctggcatagagtaggcactttataataaatgtctcttgaGCCAAATGGTTTATATAGGGTTGAAAAGTACCTTGTT-----TTTGTTTTTTGAGAGTCTGGCTGAAGAGGAACTCCCACATGTCTGTTTGATGCAAAGGAGAAAGCTTGCTGGGGCAGAGAAGGG---GAAGGGCAGACCAGGAGTAAGATTTAATTTGGGAGTACACAGGAACCAGGAAAATGAGGTAATGTGGTTTGGTATAGTGATAGATGCTGGGTCAGATCTTGAGGATGTTTATCTTGGGCTTGAGAGCAATGGAAAGCCACAAGAACTGTTCTGG--AGTGGGAGGGAATGTCCAAATCTGTGAGTGGAA-AGGTGACTTGGGCTTCAAATGTGTCATTGTGATTGATGACCAGGGAGGCACTGTCCTCCCCT-------GCATAGGATGAGTTTGTTAT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35266721 601 - 122678785 CTTTCGAGTGTTTACTTGAGTGCACACAAGAAATGAGAGTATGTTTTACTTGGTGTTGAATGTAGAGAGTTTTGTGGTCACTGGTTTGA-TAGGTACCCCGATGTTCAGGCCTTCCTTTGCCTGAGTACTTTAGcacgagactgttagctccccgagggaggcctctttatgtacttttgtaccatgcctggcagaaagtttgtgct---cagtaaatgttGAGCATGCCCACGAGTTTATATAGGGCCAAAAAGTAGCATTGTTTA-----------TAAGAGTTTTACTGAAGAAGGACTCTCA--CATTTGTTTGCTGCAAAGAGG---------TGACACAGAGTAGGG---GAAGTTCTGG-CAGGCATA----TCAGTTCAAGAGTAGGAGGGGACCAGGAAAATGAGGTAATGCGGTTTGCTCTAGTGATAGATGCTAAATCAGATCTTGAGGGTGTTTATCTTGGGCTTGAGAGCAAAGGAAAACCACAAGATCCTTTCTGATCCTTGTAAGGGAATGGCCAAATTGGTGAATGGAGAAGCTGACTTTGGCTTTTTATGTGTCATTGTGATTGATGACCTGGGAGGGACTGTCCTTTCCTGCCCTTTGCATGGGTTGAGGTTGTTAT i canFam3.chr1 C 0 C 0 e mm10.chr19 38031104 106 - 61431566 I a score=413181.000000 s hg38.chr9_GL383541v1_alt 57333 107 + 171286 ACCTTATT-TTTATAG---TCCTGCCAGGTCTCCATGCACCAAAGCATATTCAGAACAGCAGAAACAAAACTTTAATGTTTCGTATTATGAGTTTGTCTGTAGT-ATGGTTT s panTro4.chr9 68623042 107 + 137840987 ACCTTATT-TTTATAG---TCCTGCCAGGTCTCCATGCACCAAAGCATATTCAGAACAGCAGAAACAAAACTTTAATGTTTCATATTATGAGTTTGTCTGTAGT-ATGGTTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64778724 107 + 135191526 ACCTTATT-TTTATAG---TCCTGCCAGGTCTCCATGCACCAGAGCATATTCAGAACAACAGAAACAAAACTTTAATGTTTCATATTATGAGATTGTCTGTAGT-ATGGTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57817550 107 - 122973662 ACCTTATT-TTTATAG---TCCTGCCAGTTCTCCGTGCACCAAAGCATATTCAGAACAACAGAAACAAAACTTTAATGTTTCATATTATGAGTTTGTCTGTAGT-ATGGTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79748164 107 + 112192347 ACCTTATT-TTTATAG---TCCTGCCAGGTCTCCATGCACCAAAGCGTATTCAGAACAACAGAAACAAAACTTTAATGTTTCATATTATGAGTTTGTCTGTAAT-ATGGTTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80828351 107 + 112612857 ACCTTATT-TTTATAG---TCCTGCCAGGTCTCCATGCACCAAAGCGTATTCAGAACAACAGAAACAAAACTTTAATGTTTCATATTATGAGTTTGTCTGTAAT-ATGGTTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76877423 107 + 107442819 ACCTTATT-TTTATAG---TCCTGCCAGGTCTCCATGCACCAAAGCATATTCagaacaacagaaacaaaactttaATGTTTCATATTATGAGTTTGTCTGTAat-atggttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81140617 107 + 108555830 ACCTTATT-TTTATAG---TCCTGCCCGGTCTCCATGCACCAAAGCATATTCAGAACAACAGAAACAAAACGTTAATGTTTCATATTATGAGTTTGTCTGTAAT-ATGGTTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111369453 107 - 210400635 ACCTTATT-TTTATAG---TCCTGCCGGGTCCCCATGCACCAAAGCATATTCAGAACAACAGAAACAAAACTTTAATGTTTCATATTATGAATTTGTCTGTAGT-ATGGTTT i calJac3.chr1 C 0 C 0 s mm10.chr19 38031210 92 - 61431566 ATCTTATT-TCCAT---------------TTTCCATACACCAAAGCATATTTATTACATTAA----AAAGCCCTAGTGTTCTAACTTGTGGATTTATCTACAATAAAGGCGT i mm10.chr19 I 106 C 0 s canFam3.chr1 35267322 110 - 122678785 ACCTTATTATTTGTAGTCATCCTGCCAGGTTTCTATGCACTGAAGAATATTCAAAACAATAAAAATAAGACTCCAATTCTTCATATTGTCAG-TTGTCTGTAGG-ATGAttt i canFam3.chr1 C 0 I 529 a score=328772.000000 s hg38.chr9_GL383541v1_alt 57440 113 + 171286 GTGTGTGTGTACATACCACACATTTCCACAGATAGACCAACACAAGTAAAATTAGGGGAT-ATTAAAAAACCCTTCAAAAACAATGAAACTGCCTTACAAATTCTCAGTCTTCT s panTro4.chr9 68623149 110 + 137840987 GTGTGTGTGTACATACCACACATTTCCACAGATAGACGAACACAAGTAAAATTAGGGGAT-ATTAAAAAACCCTTCAAAAACAATGAAACTGCCTTACAAGTTCTCAGTCT--- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64778831 114 + 135191526 GTGTGTGTGTACATACCACACATTTCCACAGATAGACCAACACAAGTAAAATTTGGGGATAATTAAAAAACCCTTCAAAAACAATGAAACTTCCTTACAAGTTCTCAGTCTTCT i ponAbe2.chr9 C 0 I 5 s nomLeu3.chr1a 57817657 114 - 122973662 GTGTGTGTGTACATACCACACATTTCCACAGATAGACCAACACAAATAAAATTTGAGGATAATTTAAAAACCCTTCAAAAACAATGAAACTTCCTTACAAGTTCTCAGTCTTCC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79748271 113 + 112192347 GTGTGTGTGTACATACCACACATTTCCACAGATAGACCAACACAAATAAAATTTGGGGATAATTAAAAAA-CCTTCAAAAACAATGAAACTTCCTTACACGTTCTCAGTCTTCC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80828458 113 + 112612857 GTGTGTGTGTACATACCACACATTTCCACAGATAGACCAACACAAATAAAATTTGGGGATAATTAAAAAA-CCTTCAAAAACAATGAAACTTCCTTACACGTTCTCAGTCTTCC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76877530 113 + 107442819 gtgtgtgtgtacataccaCACATTTCCACAGAGAGACCAACACAAATAAAATTTGGGGATAatttaaaaa-ccttcaaaaacaATGAAACTTCCTTACACGTTCTCAGTCTTCC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81140724 113 + 108555830 GTGTGTGTGTACATACCACACATTTCCACAGATAGACCAACACAAATAAAATTTGGGGATAATTAAAAAA-CCTTCAAAAACAATGAAACTTCCTTACACGTTCTCAGTCTTCC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111369560 114 - 210400635 GTGTGTGTGTACATACCACACATTTCCGCAAATCGGCCAACACAAATAAAATTTGGGAATAATTTGAAAGTCCTTCAAAAACAATGAAACTTCCTTACAAGTTCTCAGTCTTTC i calJac3.chr1 C 0 C 0 s mm10.chr19 38031302 78 - 61431566 GAGGGT-TGCACCTACC-----CTTCC---------TGAAGATCAATAAGGTCCAAGCA------------CCTTTAAAAACAATGACTTCTGCT---------TTAGTCCTCT i mm10.chr19 C 0 C 0 e canFam3.chr1 35267432 529 - 122678785 I a score=-9479.000000 s hg38.chr9_GL383541v1_alt 57553 37 + 171286 CCAGACTTCTCTGAAGAACTCAAGACTTCTCTTGAAG- s panTro4.chr9 68623259 25 + 137840987 ------------GAAGAACTCAAGACTTCTCTTGAAG- i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57817771 6 - 122973662 --------------------TGAGCC------------ i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79748384 6 + 112192347 --------------------TGAGTC------------ i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80828571 6 + 112612857 --------------------TGAGTC------------ i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76877643 6 + 107442819 --------------------TGAGTC------------ i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81140837 6 + 108555830 --------------------TGAGTC------------ i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111369674 6 - 210400635 --------------------TGAGTC------------ i calJac3.chr1 C 0 I 2 s mm10.chr19 38031380 7 - 61431566 --------------------CAAGGC-----------T i mm10.chr19 C 0 C 0 e canFam3.chr1 35267432 529 - 122678785 I e ponAbe2.chr9 64778945 5 + 135191526 I a score=1887934.000000 s hg38.chr9_GL383541v1_alt 57590 649 + 171286 TCTTGGTGTCTTCGAGAGACTTTTAACCAATCTCCCAAAGAGTGTAGAAGCTTGTGGATAGATTCAGCAAATT----GAAGGTCCCATAGTCATCATATGAGCTAGC---CCCAGGCTCAATCCACTAAGCGAAAGAAATTTCATGAGATC----------TTTTTTTTT---CTGGAGGCCCCCTGAGGCCATTACTTCCTCCTGGGAATATCTAAGGAAGCTAACCAATTACAATCAAATCACCTAA-----------------------------------TTCTTACC-CGTCACCTACTGTGCCTATGCCAGATGTTCTTACCTGTGATAATCTTATTTCCAATAAAAATAAAAGACACCCTGCCTGGACAGAACAGACTGTCACAGCTCCAGTGTC-------ATCCACAAGATGAGTGTGGCTTAGGCCTGTGGGGCAGGGAAAATAAAAGAGAAGAAACAAATGCATACAGGAATTTCCATCTTGCTTCTTGATACAGACTGTGAAGTGTTAGGATATACAGAATGTGGCtgagtccatgagtttacaaccagcctgggcaacatagcaagaccctgtctctataa---------ataaa---taAATAAATG----------------ATATAGAGAACATGGAATAATAATATCCTCTTAAATGATTGCTGGGGAGCTCAGATAAGATGGTGTGGGTAACAGCCCTTATGTAAGCTACAGAAATCTCTAT s panTro4.chr9 68623284 640 + 137840987 TCTTGGTGTCTTCAAGAGACTTTTAACCAATCTCCCAAAGAGTGTAGAAGCTTGTGGATAGATTCAGCAAATT----GAAGGTCCCATAGTCATCATATGAGCTAGC---CCCAGGCTCAATCCACCAAGCGAAAGAAATTTCATGAGATC----------TTTTTTTTT--TCTGGAGGCCCCCTGAGGCCATTACTTCCTCCTGGGAATATCTAAGGAAGCTAACCAATTACAATCAAATCACCTAA-----------------------------------TTCTTACC-CGTCACCTACTATGCCTATGCCAGATGTTCTTACCTGTGATAATCTTATTTCCAATAAAAATAAAAGACACCCAGCCTGGACAGAACAGACTGTCACAGCTCCAGTGTC-------ATCCACAAGATGAGTGTGGCTTAGGCCTGTGGGGCAGGGAAAATAAAAGAGAAGAAACAAATGCTTATAGGAATTTCCATCTTGCTTCTTGATACAAACTGTGAAGTGTTAGGATATACAGAATGTGGCtgagtccatgagtttacaaccagcctgggcaacatagcaagaccctgtctctataa---------ataaa---taAAT----G----------------ATATAGAGAACATGGAATA------TCCTcttaaatgattgctggggagctcagataagatggtgtgggtaacagcccttatgtaagctacagaaatctctat i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64778950 686 + 135191526 TCTTGGTGTCTTCAAGAGACTTTTAACCAATCTCCTAAAGAGTGTAGAAGCTTGTGGATAGATTCAGCAAATT----GAAGGTCCCATAGTCATCATATGAGCTAGC---CCCAGGCTCAATCCACCAAGAGAAAGAAATTTCACGAGATC----------TTTTTTTTT-TTTTGGAGGCCCCCTGAGGCCATTACTTCCTCCTGGGAATACCTAAGGAAGCTAACCAATTACAATCAAATCACCTAATTCTTACCTGTCACCTACTATGCCTATGCCAGATGTTCTTACC-TGTCACCTACTATGCCTATGCCAGATGTTCTTACCTGTGATAATCTTATTTCCAGTAAAAATAAAAGACACCCAGCCTGGACAGAACAGACTGTCACAGCTCCAGTGTC-------ATCCACAAGATGAGTGTGGTTTAGGCCTGTGGGGCAGGGAAAATAAAAGAGAAGAAACAAATGCTTATAGGAATTTCCATCTTGCTTCTTGATACAGACTGTGAAGTGTTAGGGTATACAGAATGTGGCtgagtccatgagtttacaaccagcctgggcaacatagcaagaccctgtctctataa---------ataaa---taaataaatG----------------ATATAGAGAACATggaataataatatcctcttaaatgattgctggggagctcaaataagatggtgtgggtaacagcccttatgtaagctacagaaatctctat i ponAbe2.chr9 I 5 C 0 s nomLeu3.chr1a 57817777 648 - 122973662 TCTTGGTGGCTCCAAGAGACTTTTAACCAATCTCCCAAAGAGTGTAGAAGCTTGTGGATAGATTCAGCAAATT----GAAGGTCCCATAGTCATCATATGAGCTAGC---CTCAGGCTCAATCCACCAAGAGAAAGAAATTTCACGAGATC----------TTTTTTTTTTTTTTGGAGGCCCCCTGAGGCCATTACTTCCTCCTGGGAATATCTAAGGAAGCTAACCAATTACAACCAAATCACCTAA-----------------------------------TTCTTACC-TGTCACCTACTATGCCTATGCCAGATGTTCTTACCTGTGATAATCTTATTTCTAATAAAAATAGAAGACACCCAGCCTGGATATAACAGACTGTCACGGCTCCAGTGTC-------ATCCACAAGATGAGTGTGGCTTAGGCCTGTGGGGGAGGGAAAATAAAAGAGAAGAAACAAATGCTTATAGGAATTTCCAT----CTTCTTGATACAGACTGTGAAGTGTTAGGATATACAGAATGTGGCtgagtccatgagtttatcaccagcttgggcaacatagcaagaccctgtctccataa---------ataaa---taaataatag----------------aaaTAGAGAACATggaataataatatcctcttaaatgattgctggggagctcaaataagatggtgcgggtaacagcccttatgtaagctacagaaatctctat i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79748390 665 + 112192347 TCTTGGTGGCTCCATGAGACTTTTAACCAGTCTCCCAAAGAGTGTAGAAACTTGTGGATAGATTCAGCAAATT----GAAGGTCTCATAGTCATCATATGAGCCAGT---CATAGGCTCAATCCACCAACAGAAAGAAATTTCAAGAGATC----------TTTTTTTTTTTTTCTGAGGCCCCCTGAGGCCATTACTTCCTCCTGGGAATATCTAAGGAAGTTAACCAGTTACAATCAAATCACCTAA-----------------------------------TTCTCACC-TGTCACCTACTATGCCTATGCCAGATGTTCTTACTTGTGTTAATCTTATTTCCAATAAAAATAAAAGACACCCAGCCTGGACATAATGGACTGTCACAGCTCCAGTGTC-------ATCCACGAGATGAATGTGGCTTAGGCCTGTGGGGCAGGGAAAATAAAAGAGAAGAAACAAATGCTTACAGGAATTTCCATCTTGCTTCTTGATACAGACTGTGAAGGGTTAGAATATAGAGAATGTGGCtgagtccaggagtttgtaaccagcctgggtaacatagcaagaccctgtctctacaa-----aaaaataaa---taaataaatg----aataaataaaAGATATAGAGAACACAG---AATAATATCCTCTTAAATGATTGCTGGGGAGCTCAGATAAGATGGTGTGGGTAGCAGCCCTTATGTAAGCTACAGAAATCTCTAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80828577 669 + 112612857 TCTTGGTGGCTCCATGAGACTTTTAACCAGTCTCCCAAAGAGTGTAGAAACTTGTGGATAGATTCAGCAAATT----GAAGGTCTCATAGTCATCATATGAGCCAGC---CATAGGCTCAATCCACCAACAGAAAGAAATTTCAAGAGATCtttt------tttttttttttttCTGAGGCCCCCTGAGGCCATTACTTCCTCCTGGGAATATCTAAGGAAGTTAACCAGTTACAATCAAATCACCTAA-----------------------------------TTCTCACC-TGTCACCTACTATGCCTATGCCAGATGTTCTTACTTGTGTTAATCTTATTTCCAATAAAAATAAAAGACACCCAGCCTGGACATAATGGACTGTCACAGCTCCAGTGTC-------ATCCACGAGATGAATGTGGCTTAGGCCTGTGGGGCAGGGAAAATAAAAGAGAAGAAACAAATGCTTACAGGAATTTCCATCTTGCTTCTTGATACAGACTATGAAGGGTTAGAATATggagaatgtggctgagtccaggagtttgtaaccagcctgggtaacatagcaagaccctgtctctacaa-----aaaaataaa---TAAATAAATG----AATAAATAAAAGATATAGAGAACACAG---AATAATATCCTCTTAAATGATTGCTGGGGAGCTCAGATAAGATGGTGTGGGTAGCAGCCCTTATGTAAGCTACAGAAATCTCTAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76877649 675 + 107442819 TCTTGGTGGCTCCATGAGACTTTTAACCAGTCTCCCAAAGAGTGTAGAAACTTGTGGATAGATTCAGCAAATT----GAAGGTCTCATAGTCATCATATGAGCCAGC---CATAGGCTCAATCCaccaacagaaagaaatttcaagagatc-ttt------tttttttttttttctgaggtccCCTGAGGCCATTACTTCCTCCTGGGAATATCTAAGGAAGTTAACCAGTTACAATCAAATCACCTAA-----------------------------------TTCTCACC-TGTCACCTACTATGCCTATGCCAGATGTTCTTACCTGTGATAATcttatttccaataaaaataaaagacacccaGCCTGGACATAATGGACTGTCACAGCTCCAGTGTC-------ATCCACGAGATGAATGTGGCTTAGGCCTGTGGGGcagggaaaataaaagagaagaaacaaatgctTACAGGAATTTCCATCTTGCTTCTTGATACAGACTGTGAAGGGTTAGAATATAGAGAATGTGGCTGAGTCCGGGAGTTTgtaaccagcctgggtaacatagcaagaccctgtctctacaa-----aaaaataaa---taaataaatgaataaataaataaaagatatagagaacacagaataataataTCCTCTTAAATGATTGCTGGGGAGCTCAGATAAGATGGTGTGGGTAGCAGCCCTTATGTAAGCTACAGAAATCTCTAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81140843 686 + 108555830 TCTTGGTGGCTCCATGAGACTTTTAACCAGTCTCCCAAAGAGTGTAGAAACTTGTGGATACGTTCAGCAAATT----GAAGGTCTCATAGTCATCATATGAGCCAGT---CACAGGCTCAATCCACCAACAGAAAGAAATTTCAAGAGATCtttttttttattttttatttttCCTGAGGCCCCCTGAGGCCATTACTTCCTCCTGGGAATAGCTAAGGAAGCTAACCAGTTACAATCAAATCCCCTAA-----------------------------------CTCTCACC-TGTCACCTACTATGCCTACGCCAGATGTTCTTACCTGTGATAATCTCATTTCCAATAAAAATAAAAGACACCCAGCCTGGACATACTGGACTGTCATAGCTCCAGTGTC-------ATCCACGAGATGAATGTGGCTTAGGCCTGTGGGGTGGGGAAAATAAAAGAGACGAAACAAATGCTTACAGGAATTTCCATCTTGCTTCTTGATACAGACTGTGAAGGGTTAGAATATAGAGAATGTGGCtgagtccaggagtttgtaaccagcctgggtaacatagcaagacactgtctctacaaaaaataaaaataaaaattaAATAAATA----AATAAATAAAAGATATAGAGAGCACAGAATAATAATATCCTCTTAAATGATTGCTGGGGAGCTCAAATAAGATGGTGTGGGTAGCAGCCCTTATGTAAGTTACAGAAATCTCTAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111369682 637 - 210400635 --TTGGTGGCTCCA--AGATTTTAACCCACTCTCTCAAAGTGTGCAGAAGCTTGTGGATAGATTTAGCAAATT----GAAGGTCCCATAGTCATCATATGAGCAAACCCACCAAGGTTCAACCCACCAAGAGAAAAACATTTCAAGAGATC----------TTTCTTTTG------GAGGCCCCTTGAGGCAATTACTTCCTCCTGGGAATAGCTAAGGAAGCTAAGCAATTACAATCAAATCACCTAA-----------------------------------TTCTTACCTTGTCACCTACTATGACTATGCC--ATGTTCTTACCTGTGATAATCTCGTTTCCAATAAAAATGAAAGACACCT-GCCTGAACATAACAGACTGTCACAGCTGCAGTGTC-------ATCCAGGAGATGAGTGTGGCTTAGGCCTGTGGGGCAGGGAAAAT-----AGAAGAAACAAAGACTTATAGGAATTTCCATCTTGCCTCTTGATACAGACTGTGAAGTGTTAAGATATAGAGAATGTGGCtgagtccaggagtttataaccagcctgggcaacatagccagaccctgtctctacaa----------TCAA---TCAATCAATG----------------ATACAGAGaaaaaggaataacaatatcctcttcaatgattgctggaaagctcaaataagatggtatgggtagcagcccttatgtaaactacagaaatatttat i calJac3.chr1 I 2 C 0 s mm10.chr19 38031387 491 - 61431566 -CTTGGTCACCTTAAGATATCGTTGTTCA-------AAGTGATTCAGAAATGTGTAAATAGCCTGAGCAAATTGGAAGGAAGCCCCATACTTATCCAAGGAGCTAGC---CTTGGGCCCAATCC----AGAAGACAGTATTTCATATATTC----------TCCTTCTTT-----GAAGACTCATTATGGC-------TCCTCCAGGGAATGCCCAAGG--------------------ATTCACCTTA-----------------------------------TACTTACC-CATTAGTCAGTCTTCCTGTGCCAGGGGATTT------------TCCTCTTTCCAAT---------------------TTCACAT------CTGTCACATTCCCTAGGTCTGGGGAAATCCAGAAGACAGGCATGGCCGAAGCCCAAAGGAAAGGCTAAATGCAAAGGGCG----ATAGGCTTATAGAGCCTTCCATCTTCCCCTTTGATTTAGCCAAGGAAGTGCTGTGATGTAAAGATTTGGACAGGGTCATGG----------------------------------------CTACTT-----------------TAAATAACTG-------------------------------------------TTGCTAAAT------------TCACAAAAAGGCTAGTGTTGGCAGTAACCC-TAAGCAAACTGCAGAAATATGTAG i mm10.chr19 C 0 C 0 e canFam3.chr1 35267432 529 - 122678785 I a score=782106.000000 s hg38.chr9_GL383541v1_alt 58239 244 + 171286 GAATTATA---GTTGTTCTGGAAATGTCAAATTCATTAGGT--AAAAAAACTCTTTTAAAAAAGGCATCTTCAAAAGCCAAGCTTCAG--TCTAATATAATTTGCCCATGGAAG-TAAGTCTGTAATTCACATATTTAAAAAGTGAATGAAAGGATGGTCTTTCATTTAATATCACTAG------------------------TTTTTTATG-CTTTTA----CTCAATTGTTCCTAGTTTGGAGTGCTATCATCTTCTAACCTCTGCAAGACTATTGGGG s panTro4.chr9 68623924 244 + 137840987 gaatTATA---GTTGTTCTGGAAATGTCAAATTCATTAGGT--AAAAAAACTCTTTTAAAAAAGGCATCTTCAAAAGCCAAGCTTCAG--TCTAATATGATTTGCCTATGGAAG-TAAGTCTGTAATTCACATATTTAAAAAGTGAATGAAAGGATGGTCTTTCATTTAATATCACTAG------------------------TTTTTTATG-CTTTTA----CTCAATTGTTTCTAGTTTGGAGTGCTATCGTCTTCTAACCTCTGCAAGACTATTGGGG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64779636 243 + 135191526 gaatTATA---GTTGTTCTGGAAATGTCAAATTCATTAGGT--AAAAAAA--CTTTTAAAAAAGGCATCTTCAAAAGCCAACCTTCAG--TCTAATATAATTTCCCCATGGAAG-TAAGTCTGTAATTCACATATTTAAAAAGTGAATGAAAGGATGGTCTTTCATTTAATATCACTAG-T----------------------TTTTTTATG-CTTTTA----CTCAATTGTTTCTAGTTTGAAGTGCTATTGTCTTCTAACCTATGCAAGACTATTGGGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57818425 248 - 122973662 gaatTGTAGTTGTTGTTCTGGAAATGTCAAATTCATTAGGT---AAAAAACTCTTTTAAAAAAGGCATCTTCAAAAGCCAAGCTTCAG--TCTAATATAATTTCCCCATGGAAG-TAAGTCTGTAATTCACATATTTAAAAAGTGAATGAAAGGATGGTCTTTCATTTAATATCACTAGTT----------------------TTTTTTATG-CTTTTA----CTCAATTGTTTCTAGTTTGGAGTGCTATCGTCTTCTAACCTCTGCAAGACTACTGGGG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79749055 250 + 112192347 GAATTATAGTTGTTGTTCTGGAAATGTCAAATTCATTAGGTTAAAAAAAACTCTTTTTAAAAAACTGTCTTCAAAAGCCAAGCTTCAG--TCTAATATAATTTCCCCATGGAAG-TAAGTCTGTAATTCACATATTTAAAAAGTGAATGAAATGATGGTATTTCATTTAATATCACTAG-T----------------------TTTTTTATG-CTTTTA----CTCAATTGTTTGTATTTTGGAGTGCTATTGTCTTCTAACCTCTGCAAGACTATTGGGG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80829246 250 + 112612857 GAATTATAGTTGTTGTTCTGGAAATGTCAAATTCATTAGGTTAAAAAAAACTCTTTTTAAAAAACTGTCTTCAAAAGCCAAGCTTCAG--TCTAATATAATTTCCCCATGGAAG-TAAGTCTGTAATTCACATATTTAAAAAGTGAATGAAATGATGGTATTTCATTTAATATCACTAG-T----------------------TTTTTTATG-CTTTTA----CTCAATTGTTTCTATTTTGGAGTGCTATTGTCTTCTAACCTCTGCAAGACTATTGGGG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76878324 247 + 107442819 GAATTATA---GTTGTTCTGGAAATGTCAAATTcattaggttaaaaaaaactctttttaaaaaactgtcttcAAAAGCCAAACTTCAG--TCTAATATAATTTCCCCATGGAAG-TAAGTCTGtaattcacatatttaaaaagtgaatgaaatgaTGGTATTTCATTTAATATCACTAG-t----------------------ttttttATG-CTTTTA----CTCAATTGTTTCTATTTTGGAGTGCTATTGTCTTCTAACCTCTGCAAGACTATTGggg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81141529 250 + 108555830 GAATTATAGTTGTTGTTCTGGAAATGTCAAATTCATTAGGCTAAAAAAACTCTTTTTAAAAAAACTGTCTTCAAAAGCCAAGCTTCAG--TCTAATATAATTTCCCCATGGAAG-TAAGTCTGTAATTCATATATTTAAAAAGTGAATGAAATGATGGTATTTCATTTAATATCACTAG-T----------------------TTTTTTATG-CTTTTA----CTCAATTGTTTCTATTTTGGAGTGCTATTGTCTTCTAACCTCTGCAAGACTATTGGGG i chlSab2.chr12 C 0 I 135 s calJac3.chr1 111370319 249 - 210400635 gaatTATAGTTGTTGTTCTGGAAATGTAAAATTTATTAGGT--AAAAAACTTCTTTAAAAAAAGCTGTTTTCAAAAGCCAAGCTTCAG--TCTACTGTAATTTCCCCTTGAAAA-TAAGTCTGTAATTCACATATTTAAAAAGTGAACAAAAGGATGGTCTTTCATTTAATGTTACTAG-T----------------------TTTTTTATGCCTTTTA----CTCAAGTATTTCTAGTTTGAAGTGCTACTGTCTTCTAACCTCTGCAAGACTATTAGGt i calJac3.chr1 C 0 C 0 s mm10.chr19 38031878 226 - 61431566 GAATTACA---TTATTTTAAAAAATGAAAAAGGAAAGAGGA--AGAGAAG---------GAAGAATG---TCAAAATCCAAGTTCCTACTTCTACTCTGAGTTTCC--TGGGA---AAGTCAGTAATTACCATATTTA-------AACGTAAGTGTGCTCTCCTGTCAAATGCCCCAGG-------------------------TGTTCATG-GTTTGACCGCCTCAGTCATTTCTGAGTTGGAGTGTCCCTGACTTCATAGCTCTCTTAAGTTACTGGGG i mm10.chr19 C 0 I 2 s canFam3.chr1 35267961 262 - 122678785 GAATTATT---ACTTGTTTGG-AATGCAAA---CATTAGGC--AAAAAAAC-CTAGGAGAATAGCTTTCTTCCAAAGCCTAGCTTTAG--TCTTCTGCAGTTTTCTCATGGAAGTTAAGTCTACAATTCATACAATAGAAAAGTTGGGGGAAGTTTGttatctcatctcatgtcactgt-ttttttattttattttatttttattttTAATG-CTTTTG---CCTTAGTAGTTTCTGGTTAAGAGCATTGTTATCTTTTAATCTC--AAAAAGTATTGAGG i canFam3.chr1 I 529 C 0 a score=14414.000000 s hg38.chr9_GL383541v1_alt 58483 8 + 171286 -TATTTTTA s panTro4.chr9 68624168 8 + 137840987 -TATTTTTA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64779879 8 + 135191526 -TATTTTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57818673 8 - 122973662 -TATTTTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79749305 8 + 112192347 -TATTTTta i rheMac3.chr15 C 0 I 60 s macFas5.chr15 80829496 8 + 112612857 -TATTTtta i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76878571 8 + 107442819 -tatttata i papAnu2.chr15 C 0 C 0 s calJac3.chr1 111370568 8 - 210400635 -tatttttt i calJac3.chr1 C 0 I 1 s mm10.chr19 38032106 6 - 61431566 -CATTTT-- i mm10.chr19 I 2 I 3 s canFam3.chr1 35268223 8 - 122678785 Cttttttt- i canFam3.chr1 C 0 C 0 e chlSab2.chr12 81141779 135 + 108555830 I a score=24308.000000 s hg38.chr9_GL383541v1_alt 58491 35 + 171286 ---------------------------AATATATATA-----TCCTCTACCTTATA-------------------ATCCGATAAAT s panTro4.chr9 68624176 35 + 137840987 ---------------------------AATATATATA-----TCCTCTACCTTATA-------------------ATCCGATAAAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64779887 35 + 135191526 ---------------------------AATATATATA-----TTCTCTACCTTATA-------------------ATCCGATAAAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57818681 35 - 122973662 ---------------------------AATATATATA-----TTCTCTACCTTATA-------------------ATCCAATAAAT i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80829504 52 + 112612857 -----------------------------tatatata-----ttatatattttatataatatatattttatatctatattatatat i macFas5.chr15 C 0 I 65 s papAnu2.chr15 76878579 52 + 107442819 -----------------------------tatatata-----ttatatattttatataatatatattttatatctatattatatat i papAnu2.chr15 C 0 I 71 s calJac3.chr1 111370577 40 - 210400635 ---------------------------aatatatatatatttttttCTGCCTTATA-------------------ATCTGATAATT i calJac3.chr1 I 1 C 0 s mm10.chr19 38032115 35 - 61431566 ---------------------------CCCTTCCTTA-----AGCCCTGTCTTTTC-------------------ATCTAAGAATT i mm10.chr19 I 3 C 0 s canFam3.chr1 35268231 62 - 122678785 tttttttttttttttttttttttttttttAGCATATA-----TGCTCTGTCCTTTA-------------------ATCCAAGAGTT i canFam3.chr1 C 0 C 0 e chlSab2.chr12 81141779 135 + 108555830 I e rheMac3.chr15 79749313 60 + 112192347 I a score=1561955.000000 s hg38.chr9_GL383541v1_alt 58526 433 + 171286 ----TAAAGAAGTGGCTGGACTTC---TTATCTGAAAGGAAAGTCAGGTGTGATTACAGCCTTATGTCCAGAAAGCCTGCTACAAGTGACT-AGCCCAGGTTTGGGTCTGTTTCTGGCATAATTACTGTTGGAGGGCTGATGAGAGAAAAGTGTCAATCATGGAAGTTACTTGCCTTTGAAGAGAGGCAATTCCTTGTTCTTTCAGACCTGCAAGCTTAAGGAGCAACTTCCTCTATCTGGTTCACTCTTGG--CGCATAATACAATGCCACCTGCAAGTCAGAACTTTCTAATAAATGCCT----CTCCCCCACTACATTGTCCAAAAGGAATGTTGAAAATGT-----AAAAAAAAT--------------------TAAGATACAATGGAAATATTCTAGAAGACACTAC----CTATCATCTGTAAA------ATTTCAAAGC-ATG-----TTTAGCGCCTAGCATCTCC-------------TGCTAAAGATGGA----- s panTro4.chr9 68624211 433 + 137840987 ----TAAAGAAGTGGCTGGACTTC---TTATCTGAAAGGAAAGTCAGGTGTGATTACAGCCTTATGTCCAGAGAGCCTGCTACAAGTGACT-AGCCCAGGTTTGGGTCTGTTTCTGGCATAATTACTGTTGGAGGGCTGATGAGAGAAAAGTGTCAATCATGGAAGTTACTTGCCTTTGAAGAGAGGCAATTCCTTGTTCTTTCAGACCTGCAAGCTTAAGGAGCAACTTCCTCTATCTGGTTCACTCTTGG--CGCATAATACAATGCCACCTGCAAGTCAGAACTTTCTAATAAATGCCT----CTCCCCCACTACATTGTCCAAAAGGAATGTTGAAAATGT-----AAAAAAAAT--------------------TAAGATACAATGGAAATATTCTAGAAGACACTAC----CTATCATCTGTAAA------ATTTCAAAGC-ATG-----TTTAGCGCCTAGCATCTTC-------------TGCTAAAGACGGA----- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64779922 437 + 135191526 ----TAAAGAAGTGGCTGGACTTCTTTTTATCTGAAAGGAAAGTCAGGTGTGATTACAGCCTTACGTCCAGAGAGCCTGCTACAAGTGACT-AGCCCAGGTTTGGGTCTGTTTCTGGCATAATTACTGTTGGAGGGCTGATGAGAGAAAAGTGTCAATCATGGAAGTTACTTGCCTTTGAAGAGAGATAATTCCCTGTTCTTTCAGACCTGCAAGCTTAAGGAGCAACTTCCTCTATCTGGTTCACTCTTGG--TGCATAATACAATGCCACCTGCAAGTCAGAACTTTCTAATAAATGCCT----CTCCCCCACTACATTGTCCAAAAGGAATGTCGAAAACGT----AAAAAAAAAT--------------------TAAGATACAATGGAAATATTCTAGAAGACACTAC----CTATCATCTGTAAA------ATTTCAAAGC-ATG-----TTTAGCGCCTAGCATCTCC-------------TGCTAAAGATGGA----- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57818716 435 - 122973662 ----TAAAGAAGTGGCTGGACTTCTTCTTATCTGAAAGGAAAGTCAGGTGTGATTACAGCCTTATGTCCAGAGAGCCTGCTACAAGTGACT-AGCCCAGGTTTGGGTCTGTTTCTGGCATAATTACTGTTGGAGGGCTGATGAGAGGAAAGTGTCAATCATGGAAGTTACTTGCCTTTGAAGAGAGGCAATTCCCTCTTCTTTCAGACCTGCAAGCTTAAGGAGCAACTTCCTCTATCTGGTTCACTCTTGG--CGCATAATACAATGCCACCTGCAAGTCAGAACTTTCTAATAAATGCCT----CTTCCCCACTACATTGTCCAAAAGGAATGTTGAAAATGT-----AAAAAAAAT--------------------TAAGATACAATGGAAATATTCTACAAGACACTAC----CTATCATCTGTAAA------ATTTCAAAGC-ATG-----TTTAGCTCCTAGCATCTCT-------------TGCTAAA-ATGGA----- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79749373 431 + 112192347 ----TAAAGAAGTGGCTGGACTTCTTTTTATCTGAAAGGCAAGTCAGGCG------CAGCTTTATGTCCAGGGAGCCTGCTACAAGTGACT-AGCCCAGGTTTGGATCTGTTTCTGGCATAATTACTGTTGCAGGGCTGATAAGAGAAAAGTGCCAATCATGGAAGTTACTTTCCTTTGAAGAGAGGCAATTCCCTGTTCTTTCAGACCTGCAAGCTTAAGGAGCAACTTCCTCTACCTGGTTCACTCTTAG--CACATAATACAATGCCACCTGCAAGTCAGAACTTTCTAATAAATGCCT----CTCCCCCACTACATTGTCCAAAAGCAATGTTGAAAATGA----AAAAAAAAAA--------------------TTAGATGCAATGGATCTATTCTAGAAGACACTAC----CTATCATCCATAAA------ATTTCAAAGC-ATG-----TTTAGCTCCTAGAATCTCC-------------TGCTAAAGATGAA----- i rheMac3.chr15 I 60 C 0 s macFas5.chr15 80829621 431 + 112612857 ----TAAAGAAGTGGCTGGACTTCTTTTTATCTGAAAGGAAAGTCAGGCG------CAGCTTTATGTCCAGGGAGCCTGCTACAAGTGACT-AGCCCAGGTTTGGATCTGTTTCTGGCATAATTACTGTTGCAGGGCTGATAAGAGAAAAGTGCCAATCATGGAAGTTACTTTCCTTTGAAGAGAGGCAATTCCCTGTTCTTTCAGACCTGCAAGCTTAAGGAGCAACTTCCTCTACCTGGTTCACTCTTAG--CACATAATACAATGCCACCTGCAAGTCAGAACTTTCTAATAAATGCCT----CTCTCCCACTACATTGTCCAAAAGCAATGTTGAAAATGA----AAAAAAAAAA--------------------TTAGATGCAATGGATCTATTCTAGAAGACACTAC----CTATCATCCATAAA------ATTTCAAAGC-ATG-----TTTAGCTCCTAGAATCTCC-------------TGCTAAAGATGAA----- i macFas5.chr15 I 65 C 0 s papAnu2.chr15 76878702 451 + 107442819 ----TAAAGAAGTGGCTGGACTTCTTTTTATCTGAAAGGAAAGTCAGGCG------CAGCTTTATGTCCAGGGAGCCTGCTACAAGTGACT-AGCCCAGGTTTGGATCTGTTTCTGGCATAATTACTGTTGCAGGGCTGATAAGAGAAAAGTGCCAATCATGGAAGTTACTTTCCTTTGAAGAGAGGCAATTCCCTGTTCTTTCAGACCTGCAAGCTTAAGGAGCAACTTCCTCTACCTGGTTCACTCTTAG--CACATAATACAATGCCGCCTGCAAGTCAGAACTTTCTAATAAATGCCT----CTCCCCCACTACATTGTCCAAAAGCAatgttgaaaatgt----aaaaaaaaaaaaaaaaaaaaaaaaaaaattttagatgcAATGGATCTATTCTAGAAGACACTAC----CTATCATCCATAAA------ATTTCAAAGC-ATG-----TTTAGCTCCTAGAATCTCC-------------Tgctaaagatgaa----- i papAnu2.chr15 I 71 C 0 s chlSab2.chr12 81141914 438 + 108555830 ----TAAGGAAGTGGCTGGACTTCTTTTTATCTGAAAGGAAAGTCAGGCG------CAGCTTTATGTCCAGAGAGCCTGCTACAAGTGACT-AGCCCAGGTTTGGATCTGTTTCTGGCATAATTACTGTTGGAGGGCTGATGAGAGAAAAGTGCCAATCATGGAAGTTACTTTCCTTTGAAGAGAAGCAATTCCCTGTTCTTTCAGACCTGCAAGCTTAAGGAGCAACTTCCTCTACCTGGTTCATTCTTAG--CACATAATACAATGCCACCTGCAAGTCAGAACTTTCTAATAAATGCCT----CTC-CCCACTACATTGTCCAAAAGCAATGTTGAAAATGT----aaaaaaaaaaaaaaaaaa------------TTAGATGCAATGGATCTATTCTAAAAGACACTAC----CTATCATCCATAAA------ATTTCAAAGC-ATG-----TTTAGCTCCTAGAATCTCC-------------TGTTAAAGATGAA----- i chlSab2.chr12 I 135 C 0 s calJac3.chr1 111370617 434 - 210400635 ----TAAAGAAGCGGCTGGACTTCTTTTTATCTAAAAGGAAAGTCAGGCGTGATTGCAGCCTTATGTCCAGAGAGCCTGCTACAAGTGACT-AGTCCAGGTTTGGGGCTGTTTCTGGCATAATTACTGTTAGAGGGCTGATGAGAGAAAAGTGCCAATCATGGAAGTTACTT-CCTTTGAAGAGAGGCAATCCCCTGTTCTTTCAGACCCGCAAGCTTAAGTAGCAACTTCTTCCACCTGGTTCACTCTTGG--TGCATAATACAATGTCACTTGCAAGTCAGAACTTTCTAATAAATGCCT----CTCCCCAACTACATT-------AGGAATGTTGAAAATGTT---TTTAAAAATT--------------------TAAGATACAATGGAAATATTCTAGAAGACACTACCTAACTATCATCAATAAA------ATTTCAAAGC-ATG-----TTTAGCTCCTAGCATCTCC-------------TGCTAAAGATGGA----- i calJac3.chr1 C 0 C 0 s mm10.chr19 38032150 448 - 61431566 ----CAGAGAAGTGGCCGGGCTTCTCCGTATCTGAAAAGAAAATTAAGAGCTCTGGCAGCCTTAAGTCTAGAGAG-ATGC-ACGAGCCCCTCAGCACAGGTTTGGGACTACTCCTAGAATGATTGCTGCTGAAGGGCCGGTTAGGAAACAGTGCCAATCATGGAAGTTATTTTTCTTTGGAGAGTCCCATTCCCCTGCTCATCCAGACCTGCAAGCTTAAAAAGCAATTTCCTCTACCTGCTCCACTTTCAGCTCTCACAACACAATGCCACCTGCAAATCAGAACTTTTTAGTAAATGCCTTCTCCTTTCCCCCAA--------AAAAGGAATGTTGAAAAAGTTAGCAACAAAAAAC--------------------GAAGCGACAA------TACTCTAGGAGATGCTCT----CT----TCACTAAAACTTCCATTTCAATGCTCCT-----TTTAGCTCCTAACGTCTTCAAAAGGTTAAGTTAGCTTgagctgga----- i mm10.chr19 C 0 I 110 s canFam3.chr1 35268293 408 - 122678785 TAGATTGATGGCTGACTGGGCTGTTCCTTATCTGAAAGGCAAGTCAAGAACTCTTGCAGTCTTATATCTAAAGAGCCTGCTGC---------------------------------------------TTGGCGGGCTGGCTGGAGAACAGTGCCAATCACAGAAGTTATTTTTCATTGAAGAGAGACAATTCC-----CTTTCAGACCTGCAAGCTTAAAAAGCAATTTCCTCTACCTGGTTCACTCTTGG--CACTTCATACAGCGCCACCAGCAAATTGGAACTTTTTAATAAATGCCA----ACCTCCCTTCAC-------CAGAGGAATGTTGAAAATGG----CAAAAAATATATATATAGTTTAA-------AAAGCTATAATAGGGATATTCCAGGAGCTACTAA----TTATTACCACTAAA------ATTTTGAAGC-ATGCTCATCTTAACTCTTAGCATCTCC-------------CACCAAGGAGTAAGTGCA i canFam3.chr1 C 0 C 0 a score=1818608.000000 s hg38.chr9_GL383541v1_alt 58959 529 + 171286 AAAAACAAAAA-GGAATCATAGGACATTTTATTTTATAAGTAAAATCAGAAGGCATAATAGCCAACCTGGCCAACTTTTGAAAACTGTGGAAGGCAGCAGTGGCTGCTATTGTCTC------------------ATTTTCAGATATGAA---TGGGTGGTTTGCCCACTGTTGCCCTCCCTTCTCTC------TTTATATTGTA-CCACTGAT-GTTTAGCAGTACTATA-ATAAATCAATATTTTCATTTTACAGTG--TATATCTATGGGATTCTCTCATTTTCAT-TTTTTAAAGTTATATTTGTTTTGTACTAGAGTTTTGGAAAATAGTTCATATATC--GTTGCTTTTATTAAAAAAAAAGTGTTGCTCATTCTATAGCTAAAGCAAT-----TAAGGGATCCATAGTTCAGTGAAAATTTTTTTTGCATGGATATAATATGTCTCCTAAGCC-AAAGCAAGTCCTGTCCAATCCACCACTTATGACAATCTATTCTGTATAAAAGCAAT--AAGTCA-CATGTCAGAAGGGAGTTGTAACTGAAGAGAAGGATGGCACTTCTCACTG s panTro4.chr9 68624644 524 + 137840987 AAAAACAAAAA-GGAATCATAGGACATTTTATTTTATAAGTAAAATCAGAAGCCATAATAGCCAACCTGGCCAACTTTTGAAAACTGTGGAAGGCAGCAGTGGCTGCTATTGTCTC------------------ATTTTCAGATATGAA---TGGGTGGTTTGTCCACTGTTGCCCTCCCTTCTCTC------TTTATATTGTA-CCACTGAT-GTTTAGCAGTACTATA-ATAAATCAATATTTTCATTTTACAGTG--TATAT----GGGATTCTCTCATTTTCAT-TTTTTAAAGTTATATTTGTTTTGTACTAGAGTTTTGGAAAATAGTTCATATATC--ATTGCTTTTATTAAAAAAAA-GTGTTGCTCATTCTATAGCTAAAGCAAT-----TAAGGGATCCATAGTTCAGTGAAAATTTTTTTTGCATGGATATAATATGTCTCCTAAGCC-AAGGCAAGTCCTGTCCAATCCACCACTTATGACAATCTATTCTGTATAAAAGCAAT--AAGTCA-CATGTCAGAAGGGAGTTGTAACTGAAGAGAAGGATGGCACTTCTCACTG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64780359 527 + 135191526 AAAAACAAAAA-GGAATCATAGGACATTTTATTTTATAAGTAAAATCAGAATCCACAATAGCCAACCTGGCCAACTTTTGAAAACTGTGGAAGGCAGCAGTGGCTCCTATTGTATC------------------ATTTTCAGATATGAA---TGGGTGGTTTGTCCACTGTTGCCCTCCCTTCTCTC------TTTATATTGTA-CCACTGAT-GTTTAGCAGTACTATA-ATAAATCAATATTTTCATTTTACAGTG--TATATCTATGGGATTCTCTCATTTTCAT-TTTTTAAAGTTTTATTTGTTTTGTACTAGAGTTTTGGAAAATAGTTCATGTATC--ATTGCTTTTATTTAAAAAA--GTGTTGCTCATTCTATAGCTAAAGCAAT-----TAAGGGATCCATAGTTCAGTGAAAATTTTTTTTGCATGGATATAATATGTCTCCTAAGCC-AAAGCAAGTCCTGTTCAATCCACCACTTATGACAGTCTATTCTGTATAAAAGCAAT--AAGTCA-CATGCCAGAAGGGAGTTGTAACTGAAGACAAGGATAGCACTTCTCACTG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57819151 528 - 122973662 AAAAACAAAAA-GGAATCATAGGACATTTTATTTTATAAGTAAAATCAGAATCCACAATAGCCAACCTGGCCAACTTTTGAAAACTGTAGAAGGCAGCAGTGGCTGCTATTGTCTC------------------ATTTTCAGATATGAA---TGGGTGGTTTGTCCACTGTTGCCCTCCCTTCTCTC------TTTATATTGTA-CCACTGAT-GTTTAGCAGTACTATA-ATAAATCAACATTTTCATTTTACAGTA--TATATCTATGGGATTCTCTCATTTTCAT-TTTTTAAAGTTATATTTGTTTTGTACTAGAGTTTTGGAAAATAGTTCATATATA--GTTGCTTTTATTAAAAAAAA-GTGTTGCTCGTTCTATAGCTAAAGCAAT-----TAAGGGATTCATAGTTCAGTGAAAAATTTTTTTGCATGGATATAATATGTCTCCTAAGCC-AAAGCAAGTCCTGTCCAATCCACCACTTATGACAGTCTATTCTGTATAAAAGCAAT--AAGTCA-CATGCCAGAAGGGAATTGTAACTAAAGACAAGGATGGCACTTCTCACTG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79749804 523 + 112192347 AAAAACAAAAA-GGAATCATAGGACATTTTATTTTGTAAGTAAAATCAGAATCCACAATAGCCAGCCTGGCCAACTTTTGAAAACTGTGGAAGGGAGCTGTGGCTGTTATTGTCTC------------------ATTTTCAGATATGAG---TGGGTTGTTTGTCCACTGTTGCCCTTCCTTCTCTC------TTTATATTGTA-CCACTGAT-GTTTAGCAGTACTGT-----AATCAGTATTTT-ATTTTAAAGTG--CATATCTATGGGATTCTCTCATTTTCAT-TTTTTGAAGTTATATTTGTTTTGTACTAGAGTTTTGGAAAATAGTTCATGTATCA-GTTGCTTTTTTT-AAAAAAA-GTGTTGCTCATTCTATAGCTAAAGCAAT-----TAAGGAATTCATAGTTCGGTGAAAATTTTTTTTGCATGGATATAATATGTCTCCTAAGCC-AAACCAAGTCCTGTTCAATCCACCACTTATGACAGTCTATTCTGTATAAAAGCAGT--AAGTCA-CATGCCAGAAGGGAGTTGTAACTGAAGACAAGGATGGCACTTCTCACTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80830052 524 + 112612857 AAAAACAAAAA-GGAATCATAGGACATTTTATTTTATAAGTAAAATCAGAATCCACAATAGCCAGCCTGGCCAACTTTTGAAAACTGTGGAAGGGAGCTGTGGCTGCTATTGTCTC------------------ATTTTCAGATATGAG---TGGGTTGTTTGTCCACTGTTGCCCTTCCTTCTCTC------TTTATATTGTA-CCACTGAT-GTTTAGCAGTACTGT-----AATCAGTATTTT-ATTTTAAAGTG--CATATCTATGGGATTCTCTCATTTTCAT-TTTTTAAAGTTATATTTGTTTTGTACTAGAGTTTTGGAAAATAGTTCATGTATCA-GTTGCTTTTTTTAAAAAAAA-GTGTTGCTCATTCTATAGCTAAAGCAAT-----TAAGGAATTCATAGTTCGGTGAAAATTTTTTTTGCATGGATATAATATGTCTCCTAAGCC-AAACCAAGTCCTGTTCAATCCACCACTTATGACAGTCTATTCTGTATAAAAGCAGT--AAGTCA-CATGCCAGAAGGGAGTTGTAACTGAAGACAAGGATGGCACTTCTCACTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76879153 521 + 107442819 aaaaacaaaaa-ggaatcataggacattttattttataagtaaaatcaGAATCCACAatagccagcctggccaacttttgaAAACTGTGGAAGGGAGCTGTGGCTGCTATTGTCTC------------------ATTTTCAGATATGAG---TGGGTGGTTTGTCCACTGttgcccttccttctctc------tttataTTGTA-CCACTGAT-GTCTAGCAGTACTgt-----aatcagtatttt-attttaaagtg--cataTCTATGGGattctctcattttcat-tttttaaagttatatttgttTTGTACTAGAGTTTTGGAAAATAGTTCATGTAtca-gttgctttttt---aaaaaa-atgttgctcATTCTATAGCTAAAGCAAT-----TAAGGAATTCATAGTTTGGTGAAAAttttttttGCATGGATATAATATGTCTCCTAAGCC-AAACCAAGTCCTGTTCAATCCACCACTTATGACAGTCTATTCTGTATAAAAGCAGT--AAGTCA-CATGCCAGAAGGGAGTTGTAACTGAAGACAAGGATGGCACTTCtcactg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81142352 524 + 108555830 AAAAACAAAAA-GGAATCATAGGACATTTTATTTTATAAGTAAAATCAGAATCCACAATAGCCAACCTGGCTAACTTTTGAAAACTATGGAAGGGAGCTGTGGCTGCTATTGTCTT------------------ATTTTCAGATATGAG---TGGGTGGTTTGTCCACTGTTGCCCTTCCTTCTCTC------TTTATATTGTA-CCACTGAT-GTTTAGCAGTACTGT-----AATCAGTATTTT-ATTTTAAAGTG--CATATCTATGGGATTCTCTCATTTTCAT-TTTTTAAAGTTATATTTGTTTTGTACTAGAGTTTTGGAAAATAGTTCATGTATCA-GTTGCTTTTTTTTAAAAAAA-GTGTTGCTCATTCTATAGCTAAAGCAAT-----TAAGGAATTCATAGTTCAGTGAAAATTTTTTTTGCATGCATATAATGTGTCTCCTAAGCC-AAACCAAGTCCTGTTCAATCCACCACTTATGACAGTCTATTCTGTATAAAAGCAGT--AAGTCA-CATGCCAGAAGGGAGTTGTAACTGAAGACAAGGATGGCACTTCTCACTG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111371051 528 - 210400635 AATAACAAAAA-GGAATCATAGGACATTTTATTTTATAAGTAAAACCAGAATCCACAATAGCCAACCTGGCCTAGTTTTGAAAACTGTGAAAGGGAGCAGTGGCTGCTATTGTCTT------------------ATTTTCAGATATGAA---TGGGTAGTTTGTCCACTGTGGCCCTCCCTGCACTTTTTATATTTATATTGTA-TCACTGATGGTTTAGCAGTACTGTA-ATAAATCATTATTTTCACTTCAAAGTG--TATATCTATGGGACTCTTTCATTTTTTCATTTTTAAGGTTATATTTGTTTTGTACTGGAGTTTTGGAAAATAGTTAAT---TA--GTTGCTTTTTTT--AAAAAA-GCATTGTTCATTCTATAGCTAAAGCAAT-----AAAAGGATTCATAGTTCAGTGAAA--TTTTTCTGCACGAATATAATATGTCTGCTAAGCC-AAAGCAAGTCCT-TTCAACCCACCACTTATGACAGTCAATTCTGTATAAAAGCAAT--AAGTCA-CATGCCAGAAGGGAGTTGTAACTGAAGACAAGAATGGTACTTTTCACTG i calJac3.chr1 C 0 C 0 s mm10.chr19 38032708 490 - 61431566 AGAATTAACAATGGAATCAAAGGACATTTACTCCTGTGAGTAAAATCAG-------AATGGCCATTATGAGCAACTTTGGAAAA---TGGAAAGAGAAAGAGAA-------GTGTT------------------CTTTTCATGTATGAGAACTGATTTTTATCTCAGCAGTT--CTCTCCCTGTATA------TTCTTATTGTATCCTCAGCC-ACTTAACAGTA---------ACACAGCATCCTTATTTCAAAGTGTTTTTATCTATGAGACCTTCCAACTTTTGT-TTTATTTGATGCTGTCTGCTTTGAACTGATTTTCTAGAAAGCAGTTCCCATCTCAGATTTTCCTTCTT------AA-ATATTTCTTATTCTACAATCAAAACAACAGATGAAAGGGCTACATAG-CCTGTGAAA-CTCTTCTTGCATAGATATATTCTCTCCCACAAGCCGAAAACAAGTCCTTCCTGCTAGGTTACTCACAGCTGTCTGCCCT-----------AT--GAATCA-CATGACAGAA-------GCAACTGGAGACAAAGTTGACAGTTATCCCTG i mm10.chr19 I 110 I 636 s canFam3.chr1 35268701 538 - 122678785 GAAAACAGGAA-------ATAGGGCATTTTATTTTATTAGTAAAGTCAGAATCCAGAATAGCCAATGTGAGCACGTTTTGAAAACCATGGAAGTGAGCAGTGACTGCAATTGTCTTTCTCCAAGAATGAGAACAATTTTCAGATATGAA---TGGGTGGTTTGTCCATTATTGCCCTCCTCTCTCTA--TATATTCATTTTGTA-CCATTGATGGTTTACCAGTAAAGAATATAATTCAATATTTTCATTTTAAAATG--TGTATCTAAGGCATTCTATAATTCTAGT-TTCACAAAATTATACTTGTTTTGTGCCTAATTTTTGGAAAACAGTGTACATTTC--AGGGCTTTT---------AA-ATTTTGCGTGTTTTATAATCAAAGCAAC-----AAAGGGCTCCATCATTCAGTAAAAATGTTCCTGCAATGGCTGTAA--TGTCTTCTGAACC-CAAGCTAGTCCTGACTGATTGATTACTTAGGACAGTCCGTTGTATTGAAGAGCAATAAAAATCAGCAGACCAGAAGGGAGTTGTAACTGAAGAGGAGGGTGGTATTTCTCAATG i canFam3.chr1 C 0 C 0 a score=332217.000000 s hg38.chr9_GL383541v1_alt 59488 89 + 171286 AAAGAAGCCAGAGAGCTCCAGGTCAGGCACTGCATTCCATTCCCTTGGCTGTGTTCCTCTTTGCATGCTTACGCATGAtttcttccttt s panTro4.chr9 68625168 89 + 137840987 AAAGAAGCCAGAGAGCTCCAGGTCAGGCATTGCATTCCATTCCCTTGGCTGTGTTCCTCTTTGCATGCTTACGCATGAtttcttccttc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64780886 89 + 135191526 AAAGAAGCCAGAGAGCTCCAGGTCAGGCATTGCATTCCATTCCCTTGGCTGTGTTCCTCTTTGCATGCTTACGCATGAtttcttccttt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57819679 89 - 122973662 AAAGAAGCCAGAGAGCTCCAGGTCAGGCATTGCATTCCATTCCCTTGGCTGTGTTCCTGTTTGCATGCTTACGCATGAtttctttcttt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79750327 89 + 112192347 AAAGAAGCCAGAGAGCTCCAGGTCAGGCATTGCATTCCATTCCCTTGGCTGTGTTCCTCTTTGCATGCTTATGCATGATTTCTTTCTTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80830576 89 + 112612857 AAAGAAGCCAGAGAGCTCCAGGTCAGGCATTGCATTCCATTCCCTTGGCTGTGTTCCTCTTTGCATGCTTATGCATGATTTCTTTCTTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76879674 89 + 107442819 aaagaagccagagagcTCCAGGTCAGGCACTGCATTCCATTCCCTTGGCTGTGTTCCTCTTTGCATGCTTAtgcatgatttctttcttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81142876 89 + 108555830 AAAGAAGCCAGAGAGCTCCAGGTCAGGCATTGCATTCCATTCCCTTGGCTGTGTTCCTCTTCGCATGCTTATGCATGATTTCTTTCTTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111371579 89 - 210400635 AAAGAAGCCAGAGAGCTCCAGGTCAGGCTTTGCATTCCATTCCCTTGGCTGTGTTCCTCTTTGCATGCTTATGCGTGATTTCTCTCTCT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35269239 88 - 122678785 AAAAGGGCCAGCAAGCTCCAGATCAAGTCTTGCATTCCATTTCCTTGGCTTTGTTCCTCTTT-CCTCCTTACTCACGATTTCCTCTGTC i canFam3.chr1 C 0 C 0 e mm10.chr19 38033198 636 - 61431566 I a score=3278722.000000 s hg38.chr9_GL383541v1_alt 59577 952 + 171286 ctttctttctttttttttttttttTAATACCTTTTATCCCAAGCCAAAGTCCAGCCTATCAGGGGCCCAAGGAAAAATAAAAAATGAATGCCCTGTAGTACTTTAAGTTTATACATATTAATGTGGGTTCA---ATTT---GCTATTATCAAGGAGATTCTTTAGCCAGACACAA-TTAAATGTGAGAGGGACACAAAGAAACATCTTGCCTCAATTTCAGTAAAGATGAGCATgt----cctggctttaccactaattagctaagagacttAAGAATAATTGAGAGAGGGAGTTAGTTAGCCTCAATGTCTTCTCAAGTCTTTTCCAATGTTAATGTTTTGTGATCTC-GAGCCATACAAAGAAACCCAACTAAGTATCACCTATGTGTTTTCTAATGTATCAACTCCT-CCTTGGCATCAAAATATGTT--G----GAATCTTCTTCTGCTCACCTGGCAC-TTCTCAAAGTATATACTGTGA---GGT---TTCTGTGAGACGGGAGACTCATAACCCTTAAATCTCTCACTCAGGTCTTTCATGT-------------ATC---TGTTTGCAGGTCTG--------ACTTCCT--------ATTTAGCTACCTCCTTATGTTGTATCTTGGCCATAGTCTCTGAAGAATTGTCACCCAGACAGCTCTCACTCAAGGT-GACCTGACTTAAGATTGCCAGAAAAGAATAACTAATGCCATGAA-AAtctgttttgtttacagctctatct-ccaggg-actagaacagtacctgatatagagtagatgctcaacaaatattgcagaatgaatgaaCTCAGAGCTGGTTCCACGTCATC-ATGCCATGGGCTCCATATAGTCACAATCACACGCTAG----------------------ATAGGTATCCC-----CAGTGGTTCTTTTTTCT-----CACCTCACCCCCTGCCTAACCTTTACTCCACTAACAA---TGTCTTTATTTTCCTCCCTCTGCCTGATTCCTTTC----------------------------CTAGGTTAAT----TTTATACAAATCTTTTATTAACTTGA s panTro4.chr9 68625257 948 + 137840987 ctttctttctttttttttttTA---AATACCTTTT-TCCCAAGCCAAAGTCCAGCCTATCAGGGGCCCAAGGAAAAATAAAAAATGAATGCCCTGTAGTACTTTAAGTTTATACATATTAATGTGGGTTCA---ATTT---GCTATTATCAAGGAGATTCTTTAGCCAGACACAA-TTAAATGTGGGAGGGACACAAAGAAACATCTTGCCTCAATTTCAGTAAAGATGAGCATgt----cctggctttaccactaattagctaagagacttaagaataattgagagagggagttagttagcctcaatgacttctcaagtcttttccaatgttaatattttgtgatctC-GAGCCACACAAAGAAACCCAACTAAGTATCACCTATGTGTTTTCTAATGTATCAACTCCT-CCTTGGCATAAAAATATGTT--G----GAATCTTCTTCTGCTCACCTGGCAC-TTCTCAAAGTATATACTGTGA---GGT---TTCTATGAGACAGGAGACTCATAACCCTTAAATCTCTCACTCAGGTCTTTCATGT-------------ATC---TGTTTGCAGGTCTG--------ACTTCCT--------ATTTAGCTACCTCCTTATGTTGTATCTTGGCCATAGTCTCTGAAGAATTGTCACCCAGACAGTTCTCACTCAAGGT-GACCTGACTTAAGATTGCCAGAAAAGAATAACTAATGCCATGAA-AAtctgttttgtttacagatctatct-ccaggg-actagaacagtacctgatatagagtagatgctcaacaaatattgcagaatgaatgaaCTCAGAGCTGGTTCCACGTCATC-ATGCCATGGGCTCCATATAGTCACAATCACATGCTAG----------------------ATAGGTATCCC-----CAGTGGTTCTTTTTTCT-----CACCTCACCCCCTGCCTAAACTTTACTCCACTAACAA---TGTCTTTATTTTCCTCCCTCTGCCTGATTCCTTTC----------------------------CTAGGTTAAT----TTTATACAAATCTTTTATTAACTTGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64780975 945 + 135191526 ctttctttctttttttTA-------AATGCCTTTTATCCCAAGCCAAAGCCCAGCCTATCAGGGGCCCAAGGAAAAATAAAAAATGAATGCCCTGTAGTACTTTAAGTTTATACATATTAATGTGGGTTCA---ATTT---GCTATTATCAAGGAGATTCTTTAGCCAGACACAA-TTAAATGTGAGAGGGACACAAAGAAACATCTTGCCTCCATTTCAGTAAAGATGAGCATGT----CCTGGCTTTACCACTAATTAGCTAAGAGAGTTCAGAATAATTGAGAGAgggagttagttggcctcaatgacttctcaagtcttttccaatgttaatattttgtgatCTC-GAGCCATACAAAGAAACCCAACTAAGTATCACCTATGTGTTTTCTAATGTATCAACTCCT-CCTTGGCATCAAAATATGTT--G----GAATCTTCTTCTGCTCACCTGGCAC-TTCTCAAAGTATATACTGTGA---GGT---TTCTGTGAGACAGGAGACTCATAACCCTTAAATCTCTCACTCAGGTCTTTCATGT-------------ATC---TGTTTGCAGGTCTG--------ACTTCCT--------ATTTAGCTACCTCCTTATGTTGTATCTTGGCCATAGTCTCTGAAGAATTGTCACCCAGACAGCTCTCACTCAAGGT-GACCTGACTTAAGATTGCCAGAAAAGAATAACTAATGTCATGAA-AAtctgttttgtttacagctctgtct-ccaggg-actagaactgtacctgatatagagtagatgctcaacaaatattgcagaatgaatgaaCTCAGAGCTGGTTCCACGTCATC-ATGCCATGGGCTCCATATAGTCACAATCACACACCAG----------------------ATAGGTATCCC-----CAGTGGTTCTTTTTTCT-----CACCTCACCCCCTGCCTAACATTTACTCCACTTACAA---TGTCTTTATTTTCCTCCCTCTGCCTGATTCCTTTC----------------------------CTAGGTTAAT----TTTATACAAATCTTTTATTAACTTGA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57819768 938 - 122973662 ctttctttttttTT-----------AATACCTTTTATCCCAAGCCAAAGCTCAGCCTATT-GGGGCCCAAGGAAAAATAAAAAATGAATGCCCTGTAGTACTTTAAGTTTATACATATTAATGTGGGTTCA---ATTT---GCTATTATCAAGGAGATTCTTTAGCCAGACACAA-TTAAATGTGAGAGGGACACAAAGAAACATCTTGCTTCCATTTCAGTAAAGATAAGCGTGT----CCTGGCTTTACCACTAGTTAGctaagagacttaagaataattgagaaagggagttagttggcctcaatgacttctcgagtcttttcaaatgttaatattttgtgatctc-aaGCCATACAAAGAAACCCAACTAAGTATCACTTATGTATTTTCTAATGTATCAACTCCT-CCTTGGCATCAAAATATGTT--G----GAATCGTCTTCTGCTCACCTGGCGC-TTCTCAAAGTATATACTGTGA---GGT---TTCTGTGAGATGGGAGAGTCATAACCCTTAAATCTCTCACTCAGGTCTTTCATGT-------------ATC---CACTTGCAGGTCTG--------ACTTCCT--------ATTTAGCTACCTCCTTATGTTGCATCTTGGCCATAGTCTCTGAAGAATTGTCACCCAGACAGCTCTCACTCAAGGT-GACCTGACTTAAGATTGCCAGAAAAGAATAACTAATGTCATGAA-AAtctgttttgtttacagctgtatct-ccaagg-actagaacagtacctgatatagagtagatgctcaacaaatattgcagaatgaatgaaCTCAGAGCTAGATCCATGTCATC-ATGCCGTGAGCTCCATATAGTCACAATCACACACTAG----------------------ATAGGTATCCC-----CAGTGG--CTTTGTTTT-----CACCTCACCCCCTGCCTAACCTTTACTCCACTTACAA---TGTCTTTATTTTCCTCCCTCTGCCTGATTCCTTTC----------------------------CTAGGTTAAT----TTTATACAAATCTTTTATTAACTTGA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79750416 933 + 112192347 CTTTTA-------------------AATACCTTTTATCCCAAGCCAAAGCCCAGCCTATCAAGTGCCTAAGGAAAAATCAAAAATGAATGCCCTGTAGTACTTTAAGTTTATGTCTATTAATGTGGGTTCA---ATTT---GCTATTATCAAGGAGATTCTTTAGCCAGACGCAA-TTAAATGTGAGAGGGACACAGAGAAACATCTTGCTTCCATTTCAGTAAAGATGAGCATGC----CCTGGCTTTACCGCTAATTAGctaagagacttaagaataattgagagagggagtgagttggcctcaatgacttcttgagtcttttccaatgttaatattttgtgatctc-aaGCCATACAAAGAAACCCAACTAAGTATCACCTACATGTTTTCTAATGTATCAACTCCT-CCCTGGCATCAAAATATGCT--G----GAATCTTCTTCTGCTCACCTGGCAC-TTCTCAAAGTATATACTGTGA---GGC---CTCTGTCAGATGGGAGACTCATAACCCTGAAATCTCTCACTCAGGTCTTTCATGT-------------ATT---CACTTGCAGGTCTG--------ACTTCCT--------ATTTAGCTACCTCCTAATGTTGTATCTTGGCCATAGCCTCTGAAGAACTGTCACCCAGACAGCTCTCACTCAAGGT-GACCTGACTTAAGATTGCCAGAAAGGAATAACTAATGCGATGAA-AAtctgttttgtttacagctctatct-ccaggg-actagaacagtacttgaaataaagtagatgcgcaacaaatattgcagaatgaatgaaCTCAGAGCTGGTTCCACATCATC-ATGCCATGGGCTCCATATAGTCACAATCACACACTAG----------------------ATAGGTATCCC-----CAGTGGTTCTATGTTCT-----CACCTCACCCCCTGCCTAAGCTTTACTCCATTTAAAA---TGTCTTTATTTTTCTCCCTCTGCCTGATTCCTTTC----------------------------CTAGGTTAAT----TTTATACAAATCTTTTATTAACTTGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80830665 933 + 112612857 CTTTTA-------------------AATACCTTTTATCCCAAGCCAAAGCCCAGCCTATCAAGTGCCTAAGGAAAAATCAAAAATGAATGCCCTGTAGTACTTTAAGTTTATGTCTATTAATGTGGGTTCA---ATTT---GCTATTATCAAGGAGATTCTTTAGCCAGACGCAA-TTAAATGTGAGAGGGACACAGAGAAACATCTTGCTTCCATTTCAGTAAAGATGAGCATGC----CCTGGCTTTACCGCTAATTAGctaagagacttaagaataattgagagagggagtgagttggcctcaatgacttcttgagtcttttccaatgttaatattttgtgatctc-aaGCCATACAAAGAAACCCAACTAAGTATCACCTACATGTTTTCTAATGTATCAACTCCT-CCCTGGCATCAAAATATGCT--G----GAATCTTCTTCTGCTCACCTGGCAC-TTCTCAAAGTATATACTGTGA---GGC---CTCTGTCAGATGGGAGACTCATAACCCTGAAATCTCTCACTCAGGTCTTTCATGT-------------ATT---CACTTGCAGGTCTG--------ACTTCCT--------ATTTAGCTACCTCCTAATGTTGTATCTTGGCCATAGCCTCTGAAGAACTGTCACCCAGACAGCTCTCACTCAAGGT-GACCTGACTTAAGATTGCCAGAAAGGAATAACTAATGCGATGAA-AAtctgttttgtttacagctttatct-ccaggg-actagaacagtacttgaaataaagtagatgcgcaacaaatattgcagaatgaatgaaCTCAGAGCTGGTTCCACATCATC-ATGCCATGGGCTCCATATAGTCACAATCACACACTAG----------------------ATAGGTATCCC-----CAGTGGTTCTATGTTCT-----CACCTCACCCCCTGCCTAAGCTTTACTCCATTTAAAA---TGTCTTTATTTTTCTCCCTCTGCCTGATTCCTTTC----------------------------CTAGGTTAAT----TTTATACAAATCTTTTATTAACTTGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76879763 933 + 107442819 ctttta-------------------aataccTTTTATCCCAAGCCAAAGCCCAGCCTATCAAGTGCCTAAGGAAAAATCAAAAATGAATGCCCTGTAGTACTTTAAGTTTATATCTATTAATGTGGGTTCA---ATTT---GCTACTATCAAGGAGATTCTTTAGCCAGACACAA-TTAAATGTGAGAGGGACACAGAGAAACATCTTGCTTCCATTTCAGTAAAGATGAGCATGC----CCTGGCTTTACCGCTAATTAGCTGAGAGACTTAAGAATAATTGAGAGAGGGAGTGAGTTGGCCTCAATGACTTCTTGAGTCTTTTccaatgttaatattttgtgATCTC-AAGCCATACAAAGAAACCCAACTAAGTATCACCTACATGTTTTCTAATGTATCAACTCCT-CCCTGGCATCAAAATATGCT--G----GAATCTTCTTCTGCTCACCTGGCAC-TTCTCAAAGTATATACTGTGA---GGC---CTCTGTCAGATGGGAGACTCATAACCCTTAAATCTCTCACTCAAGTCTTTCATGT-------------ATT---CACTTGCAGGTCTG--------ACTTCCT--------ATTTAGCTACCTCCTAATGTTGTATCTTGGCCATAGCCTCTGAAGAACTGTCACCCAGACAGCTCTCACTCAAGGT-GACCTGACTTAAGATTGCCAGAAAGGAATAACTAATGCGatgaa-aatctgttttgtttacaGCTCTATCT-CCAGGG-ACTAGAACAGTACTTGAAATAAAGTAGATGTGcaacaaatattgcagaatgaaTGAACTCAGAGCTGGTTCCACATCATC-ATGCCATGGGCTCCATATAGTCACAATCACACACTAA----------------------ATAGGTATCCC-----CAGTGGTTCTATGTTCT-----CACCTCACCCCCTGCCTAAGCTTTACTCCACTtacaa---tgtctttatttttctccctctgcctGATTCCTTTC----------------------------CTAGGTTAAT----TTTATACAAATCTTTTATTAACTTGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81142965 933 + 108555830 CTTTTA-------------------AATACCTTTTATCCCAAGCCAAAGCCCAGCCTATTAAGTGCCTAAGGAAAAATCAAAAATGAATGCCCTGTAGTACTTTAAGTTTATATCTATTAATGTGGGTTCA---ATTT---GCTGTTATCAAGGAGATTCTTTAGCCAGACGCAA-TTAAATGTGAGAGGGACACAGAGAAACATCTTGCTTCCATTTCAGTAAAGATGAGCATGC----CCTGGCTTTACCACTAATTAGctgagagacttaagaataattgagagagggagtgagttggcctcaatgacttcttgagtcttttccaatgttaatattttgtgatctc-aaGCCATACAAAGAAACCCAACTAAGTATCACCTACATGTTTTCTAATGTATCAACTCCT-CCCTGGCATCAAAATATGCT--G----GAATCTTCTTCTGCTCACCTGGCAC-TTCTCAAAGTATATACTGTGA---GGT---CTCTGTCAGATGGGAGACTCATAACCCTTAAATCTCTCACTCAGGTCTTTCATGT-------------ATT---CACTTGCAGGTCTG--------ACTTCCT--------GTTTAGCTACCTCCTAATGTTGTATCTTGGCCATAGCCTCTGAAGAACTGTCACCCAGACAGCTCTCACTCAAGGT-GACCTGACTTAAGATTGCCAGAAAGGAATAACTAATGCGATGAA-AAtctgttttgtttacagctctatct-ccaggg-actagaacagtacttgataaaaagtagatgcgcaacaaatattgcagaacgaatgaaCTTAGAGCTGGTTCCACATCATC-ATGCCATGGCCTCCATATAGTCACAATCACACACTAG----------------------ATAGGTATCCC-----CAGTGGTTCTATGTTCT-----CACCTCACCCCCTGCCTAAGCTTTACTCGACTTACAA---TGTCTTTATTTTTCTCCCTCTGCCTGATTCCTTTC----------------------------CTAGGTTAAT----TTTATACAAATCTTTTATTAACTTGA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111371668 958 - 210400635 CTCTTTTTA----------------AATACCTTTTATCCCAAGCCAAAGCCTACCCTATCAGGGGCCCAAGGAAAAATCAAAAATGAATGCCCTGTAGTACTTTAAGTTTATATTTATTAGTGTGTATTCA---ATTT---GCTATTATCAAGGAGATTCTTTAGCCAAACACAA-TGAAATATGAGAAGGACACAGAGAAACATCTTGCTTCCATTTCAGTAAAGATGAGCACGT----CCTGGCTTTACCACTAATTAGctaagagatttaagaataattgagagagggaattagttggcctcaatgcctttctgagtcttttccaatgctaatactttgtgatcttgaaGCCATGAAAAGAAACCCAACTAAGTATCACCTATGTGTTTTCTAATATATTAACTCCT-CCTTGGCTTCAAAATATGTT--A----GAATCTTCTTCTAGTCACCTG--AC-TTCTCAAAGTATATACTGTGA---GGT---TTTTGTGAGATGAGGAACTCATAACCCTTAAATCTCTCACTCAGGTCTTCCATGT-------------ATC---CACTTCCAGGTCTG--------TCCTCCT--------ATTTAGCTACCTCCTTAGGTTATATTTTTGCCATAGAACCTGAAGAATTATCACCCAGACAGCTCTCACACAAGGT-GACTTGACTTAAGATTGCCAGAAAAGAAGAACTAATTCCATGAA-AAtctgttttgtttacatctctatct-ccaggg-actagaacatgacctgatacagagtagatcctcaacaaataatatagaatgaattaaCTCAGAGCTGGTTCTACGTCATCAATGCCATGGGCTCCATATGGTCGCAGTCACTCATTAGATAGTGATATCTCATTAGATAAATAGGCATCCC-----TGGTGGTTCTCTGTTCC-----TACCTCACCCCCTGCCATACCTTCACTCCACTTACAA---TGTCTTCATTTTCCTCCTTCTGCCTGATTCCTTTC----------------------------CTAGGTTAAT----TTTATACAAATCTTTTATTAACTTCA i calJac3.chr1 C 0 C 0 s mm10.chr19 38033834 902 - 61431566 CCTTCTTTAACTTTTCC--------CTTTTCCTTTATCTT-------TGCCCTATCTACC-AGACCATTGGAAGAAAACAAAAATAATTAACCTGAGGCACCTCAGTTTTTCATTCATTGCTG-GGGGCCA---ATTTGACGACATGACTGAGGAG-TGCTTCAGCCAGACACAAGTCAAATGTGAAAGTCAGACAGAGAAGCATCTTGGGTCCATTCCAGTGCAAACAAGCTGGCTCTACCTAGCTCTACCATACCCTAGCTAACAGGCTTCAAAGCAATTGAgagaaggac----ttggactaaatggcttctgaagtcttgtctaatgttaatgttccatgatgtt----------aaaGACATCCAATGGGGTACTGC-----TGTGTTACATAGTCCCATCCCCCACCCACCCACCCAAATACCACAAA----AAACCATCCTTTGC--------CAA-TTCTCAGTTTCTATGCTGGCACCTGGT---TTTTGTAAAGTGGGACACTCATGCC-----GATCTC-CACTCAGGCTTTTCACATTCTATTCCTGTCCATT---CCCTACCAGGACAG--------ACAGCTTCATGTATGGTTTGGTCTCTGCCTAATATCATATC---------------------CTGTTACCCCAGCAAGCTCTATGAAAAGT-GACCTAACTTCAGATTGCCAGAAAAGCTTACATAAGGCTTTAAGCAAActgttttgtttatagctatgtgtgtaaaag-cctgaaacagtcactggcacagagtggctgctctgtcaatgctgttgaatgaG-----------------CAACGT--TC-ACAACTCTGGCTCCACAGAGCCACA-TCTCATGCTGG----------------------AAAGTTATTCTGTTAGCACTGAGTCTTGTCTCTGGTGCCATATTGTCCCTTGCTCGGCCTTTAC-----TTAAAG---AGTGGGGTTTTCTCCTCATCTGCCTAATTCCTTTC----------------------------AAACACTGAT----GCTATTCAAAGGTTTT-CTGTTTTGG i mm10.chr19 I 636 C 0 s canFam3.chr1 35269327 960 - 122678785 ------------------------TTCTACCCCTCATCACAAGCCAACACCCAGCCTTTCAGGGACTTGAGGAAACCACTGGGATGACTGCCCTGTAGTCCCTCCAATTTATATTTATTGATGTGAAATCAGTTATCT---GTTGTTATTAGAGAGATTCTTTAGCCAGACAAAT-TTGAATGTGGAAGTCACACAGAGAAACATCTTGCTTCCATTTCAGGACAGCAGAGCATGT----TCTGGCCTTCCCGCTAGTCAGCTAAGAGGCTTAGGAAGAGTGGAGAGAAGAGG----TTGTACTCA--GACTTCTCAGGTCTTTTCTAATGTTAATATTTTGTGATATC-aaaaaaataaaataaaataaaGGAACCAGCTC-------TCCTCTAATATATCAAGTTCT-CCTTGGCTTCAAAA-ATACT--GACTAGAACCTTCTTCTCTTCTCCTAGCATACTCTTAACTTATATAATGTGA---GGTTAGTTTTGCGAGGTGGGAGACTTACAACCCCTAATCCTCTTACCCAGGTCTATCATGC-------------TCCCCACACTGCTAGGTGTGACCTCCCCACCTCCT--------ATTTGGCCACCTCCTTGTATTGTATCTTGGTCATAGTCTTTGAAGAGT--TCATGCTGACCGGTCTCAGTCATGGTGGACCTGACTTAAGATCACCAAAAAGGAGTAAATAATGCCATGAA-CAtcttttttgtttctagctctacct-ccaaggtattggagaactgcctggtatggagtagatgctcagtaaatattGTGGA--------TCTCAGGGCTGGCACCACATCATC-ATGTCTTGGTCTCCCCATAGTCACAATCACATGTTGG----------------------ATAGGTGGCAA-----TAGTTATTCT--GTTAC-----CACTTCTTTCCATCCCCAACCATTACTC-ACTTAAAGCTTTGTTTGTATTTTTTTTCTTCTACCTGATTTTTTTTTTGCTAATCTATAAAAATTTCCTATTCACTAGATTAATAATCtttttaaaaagattttatttatttga i canFam3.chr1 C 0 I 167 a score=1178390.000000 s hg38.chr9_GL383541v1_alt 60529 337 + 171286 TTAATAATCTAAA---TGTGCTTTCAATTCAGTGAATAAGCCATTTGGAATGAGCTTGGCTTCCCAG----TTA---TTATGATCCACTGAAACTATAAGGCAAGTACAACCAAAGGATGTTGAGA-TAAATGATA-----TATCTTTGAACTT--GAATTGTTAGGCTCTACCAGTGAGGAGTCAGCTGAAGGCAACTTTTCTCCACTGGTAACAGTACGTGGCCAGAAAGGGGAAAAGTCTGGCAACAGAGGCCTGAATGAATGTCAAACCCAGGGA----------TTTTTTAAAAATCATGAACTTTACTATATCTGAAATTGCAGTGATGGGGAAAATTAAACTTGT---TTTAATATAGAAT s panTro4.chr9 68626205 336 + 137840987 TTAATAATCTAAA---TGTGCTTTCAATTCAGTGAATAAGCCATTTGGAATGAGATTGGCTTCCCAG----TTA---TTATGATCCACTGAAACTATAAGGCAAGTACAACCAAAGGATGTTGAGA-TAAATGATA-----TATCTTTGAACTT--GAATTGTTAGGCTCTACTAGTGAGGAGTCAGCTGAAGGCAACTTTTCTCCACTGGTAACAGTACGTGGCCAGAAAGGGGAAAAGTCTGGCAACAGAGGCCTGAATGAATGTCACACCCAGGGA----------TTTTTTAAAAATCATGAACTTTACTAT-TCTGAAATTGCAGTGATGGGGAAAATTAAACTTGT---TTTAATATAGAAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64781920 337 + 135191526 TTAATAATCTGAA---TGTGTTTTCAATTCAGTGAATAAGCCATTTGGAATGAGCTTGGCTTCCCAG----TTA---TTATGATCCACTGAAACTATAAGGCAAGTACAACCAAAGGATGTTGAGA-TAAATGATA-----TATCTTTGAACTT--GAATTGTTAGGCTCTACTAGTGAGGAGTCAGCTGAAGGCAACTTTTCTCCACTGGTAACAGTACGTGACCAGAAAGGGGAAAAGTCTGGCAACAGAGGCTGGAATGAATGTCAAACCCATGGA----------TTTTTTAAAAATCATGAACTTTACTATATCTGAAATTGCAGTGATGGGGAAAATTAAACTTGT---TTTCATATAGAAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57820706 340 - 122973662 TTAATAATCTAAATGTTGTGTTTTCAATTCAGTGAATAAGCCATTTGGAATGAGCTTGGCTTCCCAG----TTA---TTATGATCCACTGAAACTATAAGGCAAGTACAACCAAAGGATGTTGAGA-TAAATGATA-----TATCTTTGAACTT--GAATTGTTAGGCTCTACTAGTGAGGAGTCGGCTGAAGGCAACTTTTCTCCACTGGTAACAGTACGTGGCCAGAAAGGGGAAAAGTCTGGCAACAGAGACCTGAATGAATGTCAAACCCAGGGA----------TTTTTAAAAAATCATGAACTTTACTATATCTGAAATTGCAGTGATGGGGAAAATTAAACTTGT---TTTAATATAGAAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79751349 347 + 112192347 TTAATAATCTAAATGTTGTGTTTTCAATTCAGTGAATAAACCATTTGGAATGGGCTTGGCTTCCCCA----TTA---TTATGATCCACTGAAACCATAAGGCAAGTACAACCAAAGGATGTTGAGA-TAAATGATA-----TGTCTTTGAACTT--GAATTGTTAGGCTCTACTAGTGAGGAGTCAGCTGAAGGCAACTTTTCTCCACTGGTAACAGTACTTGGCCAGAAAGGGGAAAAGTCTGGCAAGAGAGTCCTGAATGAATGTCAAACCCAGGGA---TTTTTTTTTTTTTTTAAATCATGATCTTTACTATATCTGAAATTGCAGTGATGGGGAAAATTAAACTTGT---TTTAATATAGAAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80831598 347 + 112612857 TTAATAATCTAAATGTTGTGTTTTCAATTCAGTGAATAAACCATTTGGAATGGGCTTGGCTTCCCCA----TTA---TTATGATCCACTGAAACCATAAGGCAAGTACAACCAAAGGATGTTGAGA-TAAATGATA-----TGTCTTTGAACTT--GAATTGTTAGGCTCTACTAGTGAGGAGTCAGCTGAAGGCAACTTTTCTCCACTGGTAACAGTACTTGGCCAGAAAGGGGAAAAGTCTGGCAAGAGAGTCCTGAATGAATGTCAAACCCAGGGA---TTTTTTTTTTTTTTTAAATCATGATCTTTACTATATCTGAAATTGCAGTGATGGGGAAAATTAAACTTGT---TTTAATATAGAAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76880696 348 + 107442819 TTCATAATCTAAATGTTGTGTTTTCAATTCAGTGAATAAACCATTTGGAATGGGCTTGGCTT--CCA----TTA---TTATGATCCACTGAAACCATAAGGCAAGTACAACCAAAGGATGTTGAGA-TAAATGATA-----TGTCTTTGAACTT--GAATTGTTAGGCTCTACTAGTGAGGAGTCAGCTGAAGGCAACTTTTCTCCACTGGTAACAGTACTTGGCCACAAAGGGGAAAAGTCTGGCAAGAGAGTCCTGAATGAATGTCAAacccagggattttttttttttttttttaaatcatgatcTTTACTATATCTGAAATTGCAGTGATGGGGAAAATTAAACTTGT---TTTAATATAGAAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81143898 345 + 108555830 TTAATAATCTAAATGTTGTGTTTTCAATTCAGTGAATAAACCATTTGGAATGGGCTTGGCTTCCCCA----TTA---TTATGATCCACTGAAACCATAAGGCAAGTACAACCAAAGGATGTTGAGA-TAAATGATA-----TGTCTTTGAACTT--GAATTGTTAGGCTCTACTAGTGAGGAGTCAGTTGAAGGCAACTTTTCTCCACTGGTAACAGTACTTGGCCAGAAAGGGGAAAAGTCTGGCAACAGAGTCCTGTATGAATGTCAAACCCAGGGA---TTTTTTTTTTTTTT--AATCATGATCTTTACTATATCTGAAATTGCAGTGATGGGGAAAATTAAACTTGT---TTTAATATAGAAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111372626 331 - 210400635 TTAATAATCTAAATGCTGTGTTTTCAATACAGTGAATAAGACATTTGGAATGAGCTTGGCTTCCCAG----------TTATGATTCACTGACACCATAAGGCAAGTACAACCAAAGAATGTTGAGA-TAGATG----------TTTTTGAACTT--GAATCATTAGGTTTTACTAATGAGGAGTCACCTGAAGGCAACTTTTCTCCACTGGTAATAGGACTTGGCCAGAAAGGGGAAAAGTCTGGGAACAGCTGCCTGAATGAAAGTCAAACCCAGGGA-----------TTTTTTAAAATCATGAACTTTACTACATCTGAAATTGCAGTGATGGGGAAAATTTAACTTGT---TTTAATATAGAAT i calJac3.chr1 C 0 C 0 s mm10.chr19 38034736 330 - 61431566 ATAATGACCCAAGTGTCGTGCCCTCAATTCAGTGAATAAGCCATTTGGAATGAATCTGATTTTCAAAATTTTTG---CTGTTAGCCCTTGGCACCATCA-GCAAACACAGCCAAAGGACTTCGTGAGTAGA--ATA-----TTACTTTGCTCTCAGGAGTCTGTGGGTACCTCCAGTGACAAG-CATAGGAAGGGAGC-TGTCTCTACT-CTGAAAGTGTCTGGCCAGTTCCAGGGAAAGCCT-------GATGCCTGCACAAAAGGTATATGCA---A---TATACCTTCTTTTATAAA--ATG------ACTTTATGTGACGCTATAATAAT---GAAAATGAAACCTGTTCCTCTGGTATGGTAT i mm10.chr19 C 0 I 219 s canFam3.chr1 35270454 339 - 122678785 TTAATAATCTTAATGTCATGTTTC--ATTTAGTGAATAATCCATTTGAAATTAGTTTGGTTTTCTAA----TTATTGTTATGATCTACTAATACCATAAGATAAAAACAGCCAAAGAACTATGAAA-TAAATGATAATGCTTGTCTTTGAATCCAAGAGACTTTGGTTTCTACTAATGAGGAGTCAACT-AAGCAAACTTTCCTCCACTATTAATAGTACTGGGTCAGAGGGGAATAAAGTCTGGCAACAGATGCCTGCATGAAAGTCATACCCAGGGA------------TTTTTATTTCCATGAACTTTA-----TTTGAAGTGGTAGTAAT-AGGAAAATTAAACTTGC---TTTACTATAGGGC i canFam3.chr1 I 167 C 0 a score=280897.000000 s hg38.chr9_GL383541v1_alt 60866 80 + 171286 TTTATTACATCTAACAGATACATAATTTACTATATCACACTTCCTTTAATCTGTAAATATAAGTACCCAAAATAGACAAT s panTro4.chr9 68626541 80 + 137840987 TTTATTACATCTAACAGATACATAATTTACTATATCACACTTCCTTTAATCTGTAAATATAAGAACCCAAAATAGACAAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64782257 80 + 135191526 TTTATTACATCTAACAGATACATAATTTACTATATCACACTTCCTTTAATCTGTAAATATAAGTACCCAAAATGGACAAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57821046 80 - 122973662 TTTATTACATCTAACAGATACATAATTTACTATATCACACTTCGTTTAATCTGTAAATATAAGTGCCCAAAATGGACAAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79751696 80 + 112192347 TTTCTTACATCTAACAGATACATAATTTACTATATCACATTTCCTTTTATCTGTAAATGTAAGTACCCAAAATGGACAAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80831945 80 + 112612857 TTTCTTACATCTAACAGATACATAATTTACTATATCACATTTCCTTTTATCTGTAAATGTAAGTACCCAAAATGGACAAC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76881044 80 + 107442819 TTTCTTACATCTAACAGATACATAATTTACTATATCACACTTTCTTTTATCTGTAAATGTAAGTACCCAAAATGGACAAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81144243 80 + 108555830 TTTATTACATCTAACAGATACATAATTTACTATATCACACTTCCTTTTATCTGTAAATATAAGTACCCAAAATGGACAAT i chlSab2.chr12 C 0 I 204 s calJac3.chr1 111372957 80 - 210400635 TTTATTACATCTAACAGATGCATAATTTACAATATCATACTTCCTTTAATCTGTAAATATAAGTACGTAAAATGGACAAT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35270793 79 - 122678785 TTTATTACATCTAATAAATATATGACTCACTATATCCCACTTTCTCTAATCTAC-AATGTAGGTACTCTAAAGGGACAAT i canFam3.chr1 C 0 C 0 e mm10.chr19 38035066 219 - 61431566 I a score=315382.000000 s hg38.chr9_GL383541v1_alt 60946 84 + 171286 AAGAAATCAAGGGTAAACATTAAGACATTAAAGCTGCACTACAGGGCCCCTTGTCATTCACAGCAATGCTAGTCCTAGGATGAT s panTro4.chr9 68626621 84 + 137840987 AAGAAATCAAGGGTAAACATTAAGACATTAAAGCTACACTACAGGGCCCCTTGTCATTCACAGCAATGCTAGTCCTAGGATGAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64782337 84 + 135191526 AAGAAATCAAGGGTAAACATCAACACATTAAAGCTGCACTACAGGGCCCCTTGTCATTCACAGCAATGTTAGTCCTAGGATGAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57821126 84 - 122973662 AAGAAATCAAGGGTATACATTAACACATTAAAGCTGCACTACAGGGCCCCTTGTCATTCACAGCAATGCTAGTCCTAGGATGAT i nomLeu3.chr1a C 0 I 263 s rheMac3.chr15 79751776 84 + 112192347 AAGAAATCAAGGGTAAACATTAACACATTAAAGCTACACTACAGGGCCCCTTGTCATTCACAGCAATGCTAGTCCTAGGATAAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80832025 84 + 112612857 AAGAAATCAAGGGTAAACATTAACACATTAAAGCTACACTACAGGGCCCCTTGTCATTCACAGCAATGCTAGTCCTAGGATAAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76881124 84 + 107442819 AAGAAATCAAGGGTAAACATTAACACATTAAAGCCACACTACAGGGCCCCTTGTCATTCACAGCAATGCTAGTCCTAGGATAAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81144527 84 + 108555830 aagaaaTCAAGGGTAAACATTAACACATTAAAGCTACACTACAGGGCCCCTTGTCATTCACAACAATGCTAGTCCTAGGATAAT i chlSab2.chr12 I 204 C 0 s calJac3.chr1 111373037 84 - 210400635 AAGAAATCAAGGGTAAACATTAACACTTTAAAGCTGCACTACAGGGCCCCTTGTCATTCACAGCAATGCTAGTCCTAGAATGGT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35270872 84 - 122678785 ATGAAATCAGAGGTAAACATTAATGCATGAAAACTGCACTACAGGGCTACTTATTGTTCACAGCAGTGTTGGTCCTGGGATGAA i canFam3.chr1 C 0 C 0 e mm10.chr19 38035066 219 - 61431566 I a score=547364.000000 s hg38.chr9_GL383541v1_alt 61030 171 + 171286 CTTCTGTTCCCAAATTAGGTGCGATAAGGCATTTGGAAAACAAATTGTCTGAAGTTTGGGAAGACGATAAC---TCTCCTCAGTATTACCATCAAC-------AGCCTTTTACCGTGGGGGCATAGACACCGTCCCTAGAGTTTTAAGT-----CCTCCAGTGAATGCTTGTAACTTGTTCCCCTA s panTro4.chr9 68626705 171 + 137840987 CTTCTGTTCCCAAATTAGGTGTGATAAGGCATTTGGAAAACAAATTGTCTGAAGTTTGGGAAGACAATAAC---TCTCCTCAGTATTACCATCAAC-------AGCCTTTTACCGTGGGGGCATAGACACCGTCCCTAGAGTTTTAAGT-----CCTCCAGTGAATGCTTGTAACTTGTTCCCCTA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64782421 172 + 135191526 CTTCTGTTCCCAAATTAGGTGCGATAAGGCATTTGGAAAACAAATTGTCTG-AGTTTGGGAGGACAATAACTCTTCTCCTCAGTATTACCATCAAC-------AGCCTTTTACCGT-GGGGCATCGACACCGTCCCTAGAGTTTTAAGT-----CCTCCAGTGAATGCTTGTAACTTGTTCCCCTA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57821473 173 - 122973662 cTTCTGTTCCCAGATTAGGTGCGATAAGGCACTTGGAAAACAAATTGTCTGAAGTTTGGGAGGACAGTAACTCTTCTCCTCAGTATTACCATCAAC-------AGCCTTTTACCGT-GGGGCATAGACACTGTCCCTAGAGTGTTAAGT-----CCTCCAGTGAATGCTTGTAACTTGTTCCCCTA i nomLeu3.chr1a I 263 C 0 s rheMac3.chr15 79751860 177 + 112192347 CTTCTGTTCCCAAATTAGGTGCGATAAGACATTTGGAAAACAAATTGTCTGAAGTTTGGGAGGACAATAACTCTTCCCCTCAGTATTACCATCAACA---AAGAGCCTTTTAACAT-GGGGCATAGACACTGTCCCTAGAGTTTTAAGT-----CCTCCAGTGAATGCTTGTAACTTGTTACCCTA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80832109 177 + 112612857 CTTCTGTTCCCAAATTAGGTGCGATAAGGCATTTGGAAAACAAATTGTCTGAAGTTTGGGAGGACAATAACTCTTCCCCTCAGTATTACCATCAACA---AAGAGCCTTTTAACAT-GGGGCATAGACACTGTCCCTAGAGTTTTAAGT-----CCTCCAGTGAATGCTTGTAACTTGTTACCCTA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76881208 177 + 107442819 CTTCTGTTCCCAAATTAGGTGCGATAAGGCATTTGGAAAACAAATTGTCTGAAGTTTGGGAGGACAATAACTCTTCCCCTCAGTATTACCATCAACA---AAGAGCCTTTTAACAT-GGGGCATAGACACTGTCCCTAGAGTTTTAAGT-----CCTCCAGTGAATGCTTGTAACTTGTTACCCTA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81144611 177 + 108555830 CTTCTGTTCCCAAATTAGGTGTAATAAGGCATTTGGAAAACAAATTGTCTGAAGTTTGGGAGGACAATAACTCTTCCCCTCAGTATTACCATCAACA---AAGAGCCTTTTACCAT-GGGGCACCGACACTGTCCCTAGAGTTTTAAGT-----CATCCAGTGAATGCTTGTAACTTGTTACCCTA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111373121 164 - 210400635 CTTCTGTTCCAAAATTAGATGGGATAAGGCCCTTGTAATACAAATTGTCTGAAGTTTGGGAAGACAATAACTC----CCTCAGTATTACCATCATCAAAGAAGAGCCTTTTGCCAT-AGGGCATAGACATCATCCCTAGAGTTTAAAGT-----CCTCCAGTGAATGCTTGTTA------------ i calJac3.chr1 C 0 C 0 s canFam3.chr1 35270956 180 - 122678785 CTTTTGTTCCCAAATTAAATGGGAT-AGGCTTTTGGAAAGCAAATTATCTGAAGTTTAGGAGGACAATACTTTTTGTACTCCCCACC-CCATCACCA---AGGAGTCTGTTACAGC-GAGGCATAGACATCATCCCTAGGGGTTTAAGTCAAACCTTCCAGTGGAATATTGCAACTGGTTGCCCCA i canFam3.chr1 C 0 C 0 e mm10.chr19 38035066 219 - 61431566 I a score=1302051.000000 s hg38.chr9_GL383541v1_alt 61201 341 + 171286 GGCTCCTGGGACCAAGT--------TCATTCCATCAAGGGGTGGTGCCAACTGGGAAGTCTGGAGCTTAGAAGATTAGATTCTTTACTTCTTAGGGTCTTAGTTTTGTCAAAGTACCTCTTACCCAGGGAGCTATCCAAGGTGCTGTCTGAAACTCCTTGTCATCTGGTAAAACTGAATCTTTTTTCCCAGTGTCAACATATATTCCTGCCTAGCTT-AGTCTCGCCCTCCTGACTTTGTCTAATCCTGACGCCATCTGTGTTTCCCAGTttggattt-----gac---cagactactgcttgtttccaaatcctgagatgtgttctgaggcattcataacttgccctcaa----------------------------ctaaccc s panTro4.chr9 68626876 341 + 137840987 GGCTCTTGGGACCAAGT--------TCATTCCATCAAGGGGTGGTGCCAACTGGGAAGTCTGGAGCTTAGAAGATTAGATTCTTTACTTCTTAGGGTCTTAGTTTTGTCAAAGTACCTCTTACCCAGGGAGCTATCCAAGGTGCTGTCTGAAACTCTTTGTCATCTGGTAAAACTGAATCTTTTTTCCCAGTGTCAACATATACTCCTGCCTAGCTT-AGTCTCGCCCTCCTGACTTTGTCTAATCCTGACGTCATCTGTGTTTCCCAGTTTGGATTT-----GAC---CAGACTACTGCTTGTTTCCAAATCCTGAGATGTGTTCTGAGGCATTCATAACTTGCCCTCAA----------------------------CTAACCC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64782593 341 + 135191526 GGCTCCTGGGACTAAGT--------TCATTCCATCAAGGGGTGGTGCCAACTGAGAAGTCTGGAGCTTAGAAGATTAGATTCTTTACTTCTTAAGGTCTTAGTTTTGTCAAAGTACCTCTTACCCAGGGAGCTATCCAAGGTGCTGTCTGAAACTCCTTGTCATCTGGTAAAACTGAATCTTTTTTCCCAGTGTCGACATATATTCCTGCCTAGCTT-AGTCTCGCCCTCCTGACTTTGTCTAATCCTGACGCCATCTGTGTTTCCCAGTTTGGATTT-----GAC---CAGACCACTGCTTGTTTCCAAATCCTGAGATGTGTTCTGAGGCATTCATAACTTGCCCTCAA----------------------------CTAACCC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57821646 341 - 122973662 GGCTCCTGGGACCAAGT--------TCATTCCATCAAGGGGTAGTGCCAACTGGGAAGTCTAGAGCTTAGAAGATTCGATTCTTTACTTCTTAGGGTCTTAGTTTTGTCAAAGTACCTCTTACCCAGGGAGCTATCCAAGGTGCTGTCTGAAACTCCTTGTCATCTGGTAAAACTGAATCTTTTTTCCCAGTGTCAACATATACTCCTGCCTAGCTT-AGTCTCGCCCTCCTGACTTTGTCTAATCCTGAAACCATCTGTGTTTCCCAGTTTGGATTT-----GAC---CAGACCACTGCTTGTTTCCAAATCCTGAGATGTGTTCTGAGGCATTCATAACTTGCCCTTAA----------------------------CTAACCC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79752037 341 + 112192347 GGCTCCTGGCACCAAGT--------TCATTCCATCAAGGGGTGGTGCCAACTGGGAAGTCTGGAGCTTAGAAGAAAAGATTCTTTACTTCTTAGGGTCTTAGTTTTGTCAAAGTACCTCTTGCCCAGGGAGCTATCCAAGGTGCTGTCTGAAACTCCTTGTCATCTGGTAAAACCGAATCTTTTTTCCCAGTGTCAACATATACCCCTGCCTAGCTT-AGTCTCACCCTCCTGACTTTGTCTAATCCTGAAGCCATCTGTGTTTCCCAGTTTGGATTT-----GAC---CAGACCACTGCTTGTTTCCAAATCCTGAGATGTGTTCTGAGGCATTCATAACTTGCCCTCAA----------------------------CTAACCC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80832286 341 + 112612857 GGCTCCTGGGACCAAGT--------TCATTCCATCAAGGGGTGGTGCCAACTGGGAAGTCTGGAGCTTAGAAGAAAAGATTCTTTACTTCTTAGGGTCTTAGTTTTGTCAAAGTACCTCTTGCCCAGGGAGCTATCCAAGGTGCTGTCTGAAACTCCTTGTCATCTGGTAAAACCGAATCTTTTTTCCCAGTGTCAACATATACCCCTGCCTAGCTT-AGTCTCGCCCTCCTGACTTTGTCTAATCCTGAAGCCATCTGTGTTTCTCAGTTTGGATTT-----GAC---CAGACCACTGCTTGTTTCCAAATCCTGAGATGTGTTCTGAGGCATTCATAACTTGCCCTCAA----------------------------CTAACCC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76881385 341 + 107442819 GGCTCCTGGGACCAAGT--------TCATTCCATCAAGGGGTGGTGCCAACTGGGAAGTCTGGAGCTTAGAAGAAAAGATTCTTTACTTCTTAGGGTCTTAGTTTTGTCAAAGTACCTCTTGCCCAGGGAGCTATCCAAGGTGCTGTCTGAAACTCCTTGTCATCTGGTAAAACCGAATCTTTTTTCCCAGTGTCAACATATACCCCTGCCTAGCTT-AGTCTCGCCCTCCTGACTTTGTCTAATCCTGAAGCCATCTGTGTTTCCCAGTTTGGATTT-----GAC---CAGACCACTGCTTGTTTCCAAATCCTGAGATGTGTTCTGAGGCATTCATAACTTGCCCTCAA----------------------------CTAACCC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81144788 341 + 108555830 GGCTCCTGGGAACAAAT--------TCATTCCATCAAGGGGTGGTGCCAAGTGGGAAGTCTGGAGCTTAGAAGAAAAGATTCTTTACTTCTTAGGGTCTTAGTTTTGTCAAAGTACCTCTTGCCCAGGGAGCTATCCAAGGTGCTGTCTGAAACTCCTTGTCATCTGGTAAAACCGAATCTTTTTTCCCAGTGTCAACATATACCCCTGCCTAGCTT-AGTCTCACCCTCCTGACTTCGTCTAATCCTGAAGCCATCTGTGCTTCCCAGTTTGGATTT-----GAC---CAGACCACTGCTTGTTTCCAAATCCTGAGATGTGTTCTGAGGCATTCATAACTTGCCCTCAA----------------------------CTAACCC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111373285 308 - 210400635 ---------AACCAAGT--------TCATTCCATCAAGGGGTGGTACCAACTAGGAAGTCTGGAGCTT---AGATTAGATTCTTCACTTTTTAGGGTCTTAGTTTTGTCTAAGTACCTCTTGCCCAGGGAGCTATCCAAGGTGCTGTCTGAAACTCCTTGTCATCTGGTAGAAGTGAATCTCTTTTTCCAGTGTTGACATATACCCCTGCCTAGCTT-AGCCTTGTCCTCCTCACTTTGTCTAATCCTGAAGCCATCTGTATTTTTCA-----------------------------TGGTTGTTTTCAAATCCTAAGATGTGTTCTGAGGCATTCATAACTTGCCCCCAA----------------------------CTAACAC i calJac3.chr1 C 0 C 0 s mm10.chr19 38035285 366 - 61431566 GGTCCCAGGAATCATATTGTTCACATTATTCCATCAAAGAGTGGCGCTAGCTGCAAAGGCCAGGACTTAGAGGATAAAAAGCCTTTCTTATTG-----TTGGCCTTGTCAAAGAACCCAGTGCTGAGGGAGCTATCCAAGGTGCTGTCTGAAGC---AGGTCTTCT-------CTGTATCTTTTGTCATAGCATTGATGTGT----CTGTCTATCTT-AAGATTTTCTCTACAGTTAAGTTTGATCCTAAAACTATCCATCTTCCCCAGTCTGGATATTCTCAGACATTCAGACCTCCACTGGCTTCTGAATCATGAGATGTTTTCTGGGGCTTTCTTAAATTTCCTTCAGCCTGTTATTTGTCAGCTTCTACGTACTCCCAACCC i mm10.chr19 I 219 I 102 s canFam3.chr1 35271136 325 - 122678785 GGCTCCAGGCACCAAGT--------TCATTCCATCA--GAGTGGTACCGACTGGGAATTCTAGGGTGTAGAAGATAAGATCCTTCATTTGTTAGGGTCCTGGCTTTGTCAGAACACCTCTTGCCAGGGGAGCTATCCAAGGTGCTGTCTGAAACTCCCTGTCCATT---------------TTGTCCCAAGCATTGACATATATTTCTGCCTGTCTTGAGCCTCACCCTTTTGCATTTGTCTAATCCCAAAACCATCTGTCTTTCCCAATTTTAATTT-----TTC---CTGACCGCTACTTGCTTCCAAATCCTGAGATGTGTTGTGAGGCATTCATAGCTTGCCCTCAT----------------------------CTGACCC i canFam3.chr1 C 0 C 0 a score=2228457.000000 s hg38.chr9_GL383541v1_alt 61542 631 + 171286 tctgcctgcct---------------------------------------------------------------ctTGTCTTGACTCTGCCTAGTCTGACTTAACTATTGCCCTCTCCTAAGATTGATTACCCTGCCCCCCATCTGGTTTTTGTGTATCTATGGTACATGTAAGCAAAATGATAGAGATCAGAAGTT-AATCAACATGAGAAATTAC-ACCTCAAGAAATTTGCAACTTTTTATTTTTTATT-AATATAAATTACCTATGTTATATATACTTTTG--AAAAAATAAGCTTTCTAATGAGAAAGCACCTAGTTATACAGAGACTATAAGG--AAAAATAG-TT-----TTTTTAGTTTATTATCTTTCAACATGTTTGTTAAAGTTAATTAAATATTCAGCTACTGTTGGCAAGATTAATATTATTATTGGAGTATATATTTG-C-ATAAAGACTTTAGTCCCATTCACAA-TTTTTAGTTGAAATAAAGAAAAGAAAATTGTTTTGACTAT-AGTGGTGGACAACA-ATTCTGGCAATTGGTGCTAAAATTTATTTGTTAAGATACAC-----TTTTTAAAAATTTGAAATACTTTAAACTTGCATACAGTGTCAAAACTTGCCTTGAAGTTAATATATTTTACTGTAATGATA---ATTTATA-TTTT-ATAAAAATACTGTTATATGCTTTCATAAAAATTATCCTCCCA s panTro4.chr9 68627217 632 + 137840987 TCTGCCTGCCT---------------------------------------------------------------CTTGTCTTGACTCTGCCTAGTCTGACTTAACTATTGCCCTCTCCTAAGATTGATTACCCTGCCCCCCATCTGGTTTTTGTGTATCTATGGTACATGTAAGCAAAATGATAGAGATCAGAAGTT-AATCAACATGAGAAATTAC-ACCTCAAGAAATTTACAACtttttattttttatt-aatataaattaCCTATGTTATATATACTTTTG--AAAAAATAAGCTTTCTAATGAGAAAGCACCTAGTTATACAGAGACTATAAGG--AAAAATAG-TT-----TTTTTAGTTTATTATCTTTCAACATGTTTGTTAAAGTTAATTAAATATTCAGCTACTGTTGGCAAGATTAATATTATTATTGGAGTATATATTTG-C-ATAAAGACTTTAGTCCCATTCACAA-TTTTTAGTTGAAATAAAGAAAAGAAAATTGTTTTGACTAT-AGTGGTGGACAACA-ATTCTGGCAATTGGTGCTAAAATTTATTTGTTAAGATACAC-----TTTTTAAAAATTTGAAATACTTTAAACTTGCATATAGTGTCAAAACTTGCCTTGAAGTTAATATATTTTACTGTAATGata---atttata-tttttataaaaataCTGTTATATGCTTTCATAAAAATTACCCTCCCA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64782934 627 + 135191526 TCTGCCTGCCT---------------------------------------------------------------CTTGTCTTGACTCTGCCTAGTCTGACTTAACTATTGCCCTCTCCTAAGATTGATCACCCTGCACCCCATCTGGTTTTTGTGTATCTATGGCACATGTAAGCAAAATGATAGAGATCAGAAGTT-AATCAACATGAGAAATTAC-ACCTCGAGAAATTTACAACtttttattttttatt-aatataaattaCCTATGTTATATATACTTTTG--AAAAAAT-AGCTTTCTAATGAGAAAGCACCTAGTTATACAGAGACTATAAGG--AAAAAGAG-TC-----TGTTTAGTTTATTATCTTTCAACATGTTTGTTAAAGTTAGTTAAATATTCAGCTTCTGTTGGCAAGATTAATATTATTATTGGAGTATATATTTG-C-ATAAAGACTTTAGTCCCATTCAAAA-TTTTTAGTTGAAAT-----AAAGAAAATTGTTTTGACTAT-AGTGGTGGACAACACATTCTGGCAATTTGTGCTAAAATTTATTGGTTAAGATACAC-----TTTTTAAAAATTTGAAATACTTTAAACTTGCATACAGTGTCAAAACTTGCCTTGAAGttaatatattttaatgtaatgata---atttata-tttttataaaaataCTGTTATATGCTTTCATAAAAATTATCCTCCCA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57821987 638 - 122973662 TCTGCCTGCCT---------------------------------------------------------------CTTGTCTTGACTCTGCCTAGTCTGACTTAACTATTGCCCTCT-CTAAGATTGATCACCCTGCCCCCCATCTGATTTTTGTGTATCTATGGCACATGTAAGCAAAATGATAGAGATCAGAAGTT-AATCAAAAAGAGAAATTACAACCTCAAGAAATTTACAACTTTTTATTTTTTATTGAATATAAATTACCTATGTTATAGATACTTTTG--AAAAAAT-AGCTTTCTAATGAGAAAGCACCTAGTTATACAGAGACTATAAGG--AAAAATAG-TTTTTTATTTTTAGTTTATTATCTTTCAACATGTTTGTTAAAGTTAATTAAATATTCAGCTACTGTTGGCAAGATCAATATTATTATTGGAGTATATATTTG-C-ATAAAGACTTTAGTCCCATTCACAA-TTTTCAGTTGAAATAAAGAAAAGAAAATTGTTTTGACTAT-AGTGGTGGACAACACATTCTGGCAATTGGTGCTAAAATTTATTTGTTAAGATACAC-----TTTTTAAAAATTTGAAATACTTTAAATTTGCCTACAGTGTCAAAACTTGCCtttaagttaatatattttaatgtaatgata---atttata-tttTTATAAAAATACTGTTATATGCTTTCATAAAAATTATCCTCCCA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79752378 633 + 112192347 TTTGCCTCCCT---------------------------------------------------------------CTTGTCTTGACTCTGCCTAGTCTGACTTAACTATCGCCCTCTCCTAAGATTGATCACCCTGCCCCCCATCTAGCTTTTGTGTATCTATGGCACATGTAAGCAAAATGATAGAGATCAGAAGTT-AATCAACAAGATAAATTAC-ACCTCAAGAAATTT-CAACttt---ttttttatt-aatataaattaCCTATGTTATATATACTTTTG--AAAAAAT-AGCTTTCTAATGAGAAATCACCTAGTTATACAGAGACTTTAAGG-AAAAAATAG-TTTTTTATTTTTAGTTTATTATCTTTCAACATGTTTGTTAAAGTTAATTAAATATTCAGCTACTGTTGGCAAGATCAATATTATTATTGGAGTATATATTTG-C-ATAAAGACTTTAGTCCCATTCACAATTTTTTAGTTGAAATAAAGAAAAGAAAATTGTTTTGACTAT-AGTGGTGGACAACACATTCTGGCAATTGGTGCTAAAATTTATTTGTTAAGATACAC-----TTTTTAAAAATTTGAAATACTTTAAATTTG--TATAGTGTCAGAACTTGCCCTGAAGTTAATATATTTTAATGTAATCATA---AGTTATG-TTTTTATAAAGATACTGCTATATGCTTTCATAAAAATTATCCTCCCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80832627 632 + 112612857 TTTGCCTCCCT---------------------------------------------------------------CTTGTCTTGACTCTGCCTAGTCTGACTTAACTATCGCCCTCTCCTAAGATTGATCACCCTGCCCCCCATCTAGCTTTTGTGTATCTATGGCACATGTAAGCAAAATGATAGAGATCAGAAGTT-AATCAACAAGATAAATTAC-ACCTCAAGAAATTT-CAACTTT---TTTTTTATT-AATATAAATTACCTATGTTATATATACTTTTG--AAAAAAT-AGCTTTCTAATGAGAAATCACCTAGTTATACAGAGACTTTAAGG-AAAAAATAG-TTTTTTATTTTTAGTTTATTATCTTTCAACATGTTTGTTAAAGTTAATTAAATATTCAGCTACTGTTGGCAAGATCAATATTATTATTGGAGTATATATTTG-C-ATAAAGACTTTAGTCCCATTCACAATTTTTTAGTTGAAATAAAGAAAAGAAAATTGTTTTGACTAT-AGTGGTGGACAACACATTCTGGCAATTGGTGCT-AAATTTATTTGTTAAGATACAC-----TTTTTAAAAATTTGAAATACTTTAAATTTG--TATAGTGTCAGAACTTGCCCTGAAGTTAATATATTTTAATGTAATCATA---AGTTATG-TTTTTATAAAGATACTGCTATATGCTTTCATAAAAATTATCCTCCCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76881726 634 + 107442819 TTTGCCTGCCT---------------------------------------------------------------CTTGTCTTGACTCTGCCTAGTCTGACTTAACTATCGCCCTCTCCTAAGATTGATCACCCTGCCCCCCATCTGGCTTTTGTGTATCTATGGCACATGTAAGCAAAATGATAGAGATCAGAAGTT-AATCAACAAGATAAATTAC-ATCTCAagaaattt-caac-tt---ttttttatt-aatataaattacctatgttatatatacttttg--aaaaaat-aGCTTTCTAATGAGAAATCACCTAGTTATACAGagactttaaggaaaaaaatag-ttttttatttttagcttattATCTTTCAACATGTTTGTTAAAGTTAATTAAATATTCAGCTACTGTTGGCAAGATCAATATTATTATTGGAGTATATATTTG-C-ATAAAGACTTTAGTCCCATTCACAATTTTTTagttgaaataaagaaaagaaaattgttttgactAT-AGTGGTGGACAACACATTCTGGCAATTggtgctaaaatttatttgttaagacacac-----tttttaaaaatttgaaatactttaaatttG--TGTAGTGTCAGAACTTGCCTTgaagttaatatattttaatgtaatcata---AGTTATGTTTTTTATAAAGATACTGCTATATGCTTTCATAAAAATTATCCTCCCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81145129 638 + 108555830 TTTGCCTGCCT---------------------------------------------------------------CTTGTCTTGACTCTGCCTAGTCTGACTTAACTATTGCCCTCTCCTAAAATTGATCACCCTG-ACCCCATCTGGCTTTTGTGTATCTATGGCACATGTAAGCAAAATGATAGAGATCAGAAGTT-AATCAACAAGATAAATTAT-ACCTCAAGAAATTT-CAACTTTTTATTTTTTATT-AATATAAATTACCTATGTTATATATACTTTTG--AAAAAAT-AGCTTTCTAATGATAAAGCACCTAGTTATACAGAGACTTTAAGG-AAAAAATAGTTTTTTTATTTTTAGTTTATTATCTTTAAACATGTTTGTTAAAGTTAATTAAATATTCAGCTACTGTTGGCAAGATCAATATTATTATTGGAGTATATATTTG-C-ATAAAGACTTTAGTCCCATTCACAATTTTTTAGTTGAAATAAAGAAAAGAAAATTGTTTTGACTAT-AGTGGTGGACAACACATTCTGGCAATTGGTGCTAAAATTTATTTGTTAAGATACAC-----TTTTAAAAAATTTGAAATACTTTAAATTTGCATATAGTGTCAGAACTTGCCTTGAAGTTAATATATTTTAAAGTAATCATA---ATTTATG-TTTTTATAAAGATACTGTTATGTGCTTACATAAAAATTATCCTCCCA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111373593 642 - 210400635 TTTGCCTGCAT---------------------------------------------------------------GTTGTCTTGACTCTGCCTACTCTGACTTAACTGTTGCCCTCTCCTAAGATTGATCACCCTGCCCCCTATCTGGTTTGTGTGTACCTATGGCACATGTAAGCAAAGTGAGAGAGATCAGAAGTT-AATCAACAAAAGAAATTAC-ACCTCAAGAAATTTACAACtttttattttttatt-tatataaattGCCTATGTTATATATACTTTTGAAAAAAAAT-AGCTTTCTAATGAGAAAGCACCTAGTTATACAGTGACTAGAAGG--AAAAATGG-TTTTTTATTTTTAGTTTATTATCTTTTAACATGTTTGTTAAAGTAAATTATGTA-TCAGCTACTGTTGACAAGATAAATATTATTATTGGAGCCCACATTTGTT-ATAAAGACATTAGTTCCATTCACAA-TTTATAGTTGAAATAAAGCAAAGAAAATTGTTTTGACTGT-AGTGGTAGACAACACATTCTGGCAAGTGGTGCTAAAATTTATTTGTTAAGATATAC-----TTTTTAAAGATTTGAAACACTTTGAATTTGCATACAGTGGCAGAACTTGCCTTGAAGTTAATGTGTTTTAATGTAATCATGATCATTTATG-TTTCTATGAAAATACTGTTGTATACTTTCATAAAAATTATCCCCCCA i calJac3.chr1 C 0 I 1178 s mm10.chr19 38035753 586 - 61431566 tctacctgcttctgtttctcaagtcctggaataaaatgcatatgtcaccacTTATGGTCTGCCTCTGCTTCTGCCTTGTCTTGACTCTGCCTCATCTGAC--AACTACTGTCTTCTCCTAAGATTGATCA-CATCTCTCTGATCCACAATTTTTGTATCTATGTCCCACGTCAGCAAGATTGTGGAAATCAGAAGCC-AATCACCAAGAGAAATTAA-ACCTTAAGAGTATGGTG--TTTTTATTTTGTATT-AATATACAATGCCTGAATTATATAT--TGTTA--CTAAGAT-----------------------------------------------------AG------------------------------CATGTTTGTT----TGAGTTAAGTATTCAGCTACTCTTGGCAAGGTAAATATTCTTA---AAACATACATTTG-CTGTATAGACATCAGACCT-TTTGCAA-TTTTTACCTAAAATTAAACTGTG-AAATTATTTTAACTATAAGCAGTGGGTAACATAGTCTGGCAATTAGTATTAAGTTTTATTTTTCAAGATATTCCTTTTTCTTTTAAGATTTGGAACATATTCAGT------------ACAAAATTTGCCCTAATGTT--TAGGCTTTA-TGTAGTTACA---A--TATA-TTGTAGTAAA-ATGCTTTTATATACATTCATAAAAATTA-------- i mm10.chr19 I 102 C 0 s canFam3.chr1 35271461 622 - 122678785 TTTGCCTGCAT---------------------------------------------------------------CTTGTCTTGACTCTGCTTAGTCTGACTTAATTCTTATCTTCTC----------TCACCCCATCCCCCACCTGGGTTTTGTGTATCTCTAGCATATG---------TGATAGAAATCAGGAGTTAAATCAATGAGAAAAATTAA-ACCTCaaaatatatatgattttattttttgtatt-aatataaattGCCTGAGTCATAT---CCTATC--AAAAAACAAGTTTTCTAATGAGAAAACCATTAGTTATACAGAGACTAGAAGG--ACAAATAG-AAAAATAATTTTCATTTATTATCTTTCAGCGTGTTTGTTAAAGTAAATTAAATATTCATATAGTGTTGGCAAGATCAATATTATTTTTGGAATGTATATTTG-TTATACAAATTTTAGTCATATTTGCAA-TTTTTACCTGAAATAAAGCAAAGAAAATTGTTTTGACTGT-GGTAGTGGATGACCCATTCTGGAAATTGATGTTAAAATGTACTTTTTAAGATACAT--TTTTTTTTAAAGATTTGGAGCACTCCAAATTTGCATACAGTGTCAAAACTTGCCTGCAAGTTAATATATTTTAA-ATAATCATAGTAATTGATG-TTCCCACAGA-ATGCTTTTATATGCTTTCATAGAAATTTTTGTTTCA i canFam3.chr1 C 0 C 0 a score=371101.000000 s hg38.chr9_GL383541v1_alt 62173 118 + 171286 TCCGATTTCCACTACAATGTGTATGTTGTCTTTATAAAGAAAAGCGAATCCATATTAATTTAGAGGACTGTGGATATACATCAGGTGTTGTGCAGTTAATTGTGAAA---CAAGTGCTCTT s panTro4.chr9 68627849 118 + 137840987 TCGGATTTCCACTACAATGTGTATGTTGTCTTTATAAAGAAAAGCGAATCCATATTAATTTAGAGGACTGTGGATATACATCAGGTGTTGTGCAGTTAATTGTGAAA---CAAGTGCTCTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64783561 118 + 135191526 TCTGATTTCCACTACAATGTGTATGTTGTCTTTATAAAGAAAAGCAAATCCATATTAATTTAGAGTACTGTGGATATACATCAGGTGTTGTGCAGTTAATTGTGAAA---CAAGTGCTCTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57822625 118 - 122973662 TCTGATTTCCACTACAATGTGTATGTTGCCTTTATAAAGAAAGGCAAATCCATATTAATTTAGAGTACTGTGGATATACATCAGGTGTTGTGCAGTTAATTGTGAAA---CAAGTGCTCTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79753011 118 + 112192347 TCTGATTTCCACTACAATGTGTATGTGGTCTTTATAAAGAAAAGCAAATCCGTATTAATTTAGAGTACTGTGGATATACATCAGCTGTTGTGCAGTTAATTGTGAAA---CAAGTGGTCTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80833259 118 + 112612857 TCTGATTTCCACTACAATGTGTATGTGGTCTTTATAAAGAAAAGCAAATCCGTATTAATTTAGAGTACTGTGGATATACATCAGCTGTTGTGCAGTTAATTGTGAAA---CAAGTGCTCTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76882360 118 + 107442819 TCTGATTTCCACTACAATGTGTATGTggtctttataaagaaaagcaaatccaTATTAATTTAGAGTACTGTGGATATACATCAGCTGTTGTGCAGTTAATTGTGAAA---CAAGTGCTCTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81145767 118 + 108555830 TCTGATTTCCACTACAATGTGTATGTGGTCTTTATAAAGAAAAGCAAATCCGTATTAATTTAGAGTACTGTGGATATACATCAGCTGTTGTGCAGTTAATTGTGAAA---CAAGTGCTCTT i chlSab2.chr12 C 0 C 0 s mm10.chr19 38036339 102 - 61431566 --------CCACTTCTACATGTGCATTGTC--CATAAGAAAAAGTAAATGTATGTGAACTTAGAGGACAGTGGCTGTATATCAAATTCTCTACAGCTGAGTGCG------TGAGTGTC--- i mm10.chr19 C 0 C 0 s canFam3.chr1 35272083 119 - 122678785 TCTGACTTCCACTCCAATGTGTATGTTGTC--TATAAGAAAAAGCAAACCCACATGATTTTAGAGCACTGTGGATACCCATCAGATATTGTGCAATTGATTGTGTAACAGCAAGTGCTCTC i canFam3.chr1 C 0 C 0 e calJac3.chr1 111374235 1178 - 210400635 I a score=394778.000000 s hg38.chr9_GL383541v1_alt 62291 111 + 171286 TGTTTTCTCAGCTTTTTCTA---------CACTG-TCTT------G------------AGGAGAAACAA--AAGCCTTCAAGCACACCACCCTCTGTGTTCTAGCTATGAAGAGG-------------------------------------------------------TTGCTTGCCTTGAGCATTGGCAGTAG s panTro4.chr9 68627967 111 + 137840987 TGTTTTCTCAGCTTTTTCTA---------CACTG-TCTT------G------------AGGAGAAACAA--AAGCCTTCAAGCACACCACCCTCTGTGTTCTAGCTATGAAGAGG-------------------------------------------------------TTGCTTGCCTTGAGCATTGGCAGTGG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64783679 111 + 135191526 TGTTTTCTCAGCTTTTTCTA---------CACTG-TCTT------G------------AGAAGAAACAA--AAGCCTTCAAGCATACCACCATCTGTGTTCTACCTATGAAGAGG-------------------------------------------------------TTGCTTGCCTTGAGCATTGGCAGTGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57822743 111 - 122973662 TGTTTTCTCAGCCTTTTCTA---------CACTG-TCTT------G------------AAAAGAAACAA--AAGCCTCCAAGCACACCACCCTCTGTGTTCTAGCTATGAAGAGG-------------------------------------------------------TTGCTTgccttgagcattggcagtgg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79753129 111 + 112192347 TGTTTTCTCAGCTTTTTCTA---------CACTG-TCTT------G------------CGAAGAAGCAA--AAGCCTCCAGGCACACCACCCTCTGTATTCTAGCTATGAAGAGG-------------------------------------------------------TTGCCTGCCTTGAGCATTGGCAGTGG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80833377 111 + 112612857 TGTTTTCTCAGCTTTTTCTA---------CACTG-TCTT------G------------AGAAGAAGCAA--AAGCCTCCAGGCACACCACCCTCTGTATTCTAGCTATGAAGAGG-------------------------------------------------------TTGCCTgccttgagcattggcagtgg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76882478 111 + 107442819 TGTTTTCTCAGCTTTTTCTA---------CACTG-TCTT------G------------AGAAGAAGCAA--AAGCCTCCAGGCACACCACCCTCTGTGTTCTAGCTATGAAGAGG-------------------------------------------------------TTGCCTGCCTTGAGCATTGGCAGTGG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81145885 111 + 108555830 TGTTTTCTCAGCTTTTTCTA---------CACTG-TCTT------G------------AGAAGAAGTAA--AAGCCTCCAGGCACACCACCCTCTGTGTTCTAGCTAGGAAGAGG-------------------------------------------------------TTGCCTgccttgagcattggcagtgg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111375413 111 - 210400635 TGTTTTCTCAGATTTTTCTA---------CACTG-TCTT------G------------AGAAGAAACAA--AAGCATCCAAGCACACCACCCTACGTTTTCCAGCCATGAAGAGG-------------------------------------------------------TTGCCTGCCTTGAGCATTAGCAGTGG i calJac3.chr1 I 1178 C 0 s mm10.chr19 38036441 179 - 61431566 TGTTTCCTAGGCTTTGTTTA---------CAATGATCAT------GCTACTGTGTGAAAGAAAAGGGGA--ACACagctgggagtggcacacacctaatctcagcaccagggagacagagacaagagggctagttcttgccaacctgggatacatatcagcaagatttcctggtctgctttaagcgttggtagaag i mm10.chr19 C 0 I 112 s canFam3.chr1 35272202 128 - 122678785 TGTTATTTCAGCTTCTTCTACTATGATCCCACTG-TCTTAAAAAAG------------AAAAAAAACAAACAAACTTCCAAGCATACCACCCTCTGTTCTCTAGCTATGAAGAGA-------------------------------------------------------TTGCCTGCCTTGAGTGTTACCAGTGG i canFam3.chr1 C 0 C 0 a score=546977.000000 s hg38.chr9_GL383541v1_alt 62402 138 + 171286 TGTTT---------------------------GTATTGGCATTTAAGGCAGAGCTAATGACTatttggaatcatccacattccttttcccagccccttctgtgatcaatgacccacatctctaagacagctctcaagattggggatgcagatcattgttattaac s panTro4.chr9 68628078 138 + 137840987 TGTTT---------------------------GTATTGGCATTTAAGGCAGAGCTAATGACTatttggaatcatccacattccttttcccagccccttctgtgatcaatgacccacatctctaagacagctctcaagattggggatgcagatcatagttattaac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64783790 138 + 135191526 TGTTT---------------------------GTATTGGTATTTAAGGCAGAGCTAATGACTatttggaatcatccacattccttttcccagccccttctgtgatcaatgacccacatctctaagacagctctcaagattggggatgcagatcatagtcattagc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57822854 138 - 122973662 tgttt---------------------------gtattggcattTAAGGCAGAGCTAATGACTATTTGGAATCATCCACATTCCTTTTCCAAGCCCCTTCTGTGATCAATGACCCACATCTCTAAGACAGTTCTCAAGATTGGGGATGCAGATCATAGTCATTAAC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79753240 137 + 112192347 TGTTT---------------------------GTATTGGCATTTAAGGCAGAGCTAGTGACTATTTGGAATCATCCACATTCCTTTTCCCAGCCCCTTCTGTGATCAGTGACCCACATCTCTAAGACAGTTCTCAAGA-CCGGGATGCAGATCATAGTCATTAAC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80833488 137 + 112612857 tgttt---------------------------gtattggcattTAAGGCAGAGCTAGTGACTATTTGgaatcatccacattccttttcccagccccttctgtgatcagtgacccacatctctaagacagttctcaaga-cggggatgcagATCATAGTCATTAAC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76882589 137 + 107442819 TGTTT---------------------------GTATTGGCATTTAAGGCAGAGCTAGTGACTATTTGGAATCATCCACATTCCTTTTCCCAGCCCCTTCTGTGATCAGCGACCCacatctctaagacagttctcaaGA-CGGGGATGCAGATCATAGTCATTAAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81145996 137 + 108555830 tgttt---------------------------gtattggcattTAAGGCAGAGCTAGTGACTATTTGgaatcatccacattccttttcccatccccttctgtgatcagtgacccacatctctaagacagttctcaaga-cggggatgcagATCATAGTCATTAAC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111375524 136 - 210400635 TGTTT----------------------------TGTTGGCATTTAAAGCAGAGCTAATGACTATTTGGAATCATCCACATTCCTTTCCCCAGCCCCTTGTGTGATCAGTGACCCACATCTCTAAAACAGTTCTCAAGATTTGGAATGCAGATTAT-GTCATTAAC i calJac3.chr1 C 0 C 0 s mm10.chr19 38036732 163 - 61431566 AGTTTCCAGTGCCCTGAGCACAGCCAGAGGCAGTGTTGGCATCTAAGGTGGAGCTAATGGCTCTGCAGAATCATTTTCACT-CTGTCCCCAG-CCCTTGTGTGACTAATGATCTGCATTTCTAAGACAGTTCTCAAGATTAATGACACATATCATAGCCATTATC i mm10.chr19 I 112 I 1 s canFam3.chr1 35272330 137 - 122678785 TGTTT---------------------------ACACTGGCATTTAGGGCAGAGCTA-CGACTGTATGGACCCATCCCTGTTCCTTTTCCCAGTCCTTTGTATGACCACTGACCCACATCTCTAAGACCATTCTCGAGATTAGGGATGAAGATCATTGCCATTAAC i canFam3.chr1 C 0 C 0 a score=2262528.000000 s hg38.chr9_GL383541v1_alt 62540 792 + 171286 aatttttt-------------------atgtctgcagaaagcaaataaaccctccagggattgagtttttgaccttggcttcTGGCCAACTCCTATCATAGAGTAGAAAATATTATTAACCAGGCACTACATTCTTACTGGGCCCCAGCTGAGCCTTGATTCAATTTAGACTTTAATATAAATAGAACTGAAATGATCAGCTAATCCATTTTAACAGTGAGACCCA---TTCTAACAAAACCTTACAAGAAAACCTGGTATATGATATAGATAAGAGGAGAGCTAGTCCCTCAGAATGCAAGTCTGGGACTCTCAATCCCCAT---TACCCTCTCGCTGCT-------------------ACAGAG-------TTCTGTCTGAGAACTAGTGACTgtccactaacttttttttccagatggggaaactgaggctcggagtggttaactcactattcaaggccacaca-----gtagggacaaagttgagtccagatatttgtctcctgaccaccttctactgtcc--------------tgttcacaacctctgccTCTTTCTTTCCCTTTCCCTGTTCCCTTGAGGTTGAAACCAGCACATCATGCACTCAGTCAGACTTTtgtattg--agagctcttttggaccccaagtgaaaaatactctaattcaaattggct----taagctaaagaaggactttatcaactaatataaattaaaagttcagggatatctggcttcaagggcatgtaggggc--ttaa-----------------------------------------------aagttccattcaatttaatctccatctctttgtatgtcttagctctgtgt--tgttgtgctggcttcattttcat-ggaccttcttcatggactccagcagatggaag s panTro4.chr9 68628216 792 + 137840987 aatttttt-------------------atgtctgcagaaagcaaataaaccctccagggattgagtttttgaccttggcttcTGGCCAACTCCTATCATAGAGTAGAAAATATTATTAACCAGGCACTACATTCTTACTGGGCCCCAGCTGAGCCTTGATTCAATTTAGACTTTAATATAAATAGAACTGAAATGGTCAGCTAATCCATTTTAACAGTGAGACCCA---TTCTAACAAAACCTTACAAGAAAACCTGGTATATGATATAGATAAGAGGAGAGCTAGTCCCTCAGAATGCAAGTCTGGGACTCTCAATCCCCAT---TACCCTCTCGCTGCT-------------------ACAGAG-------TTCTGTCTGAGAACTAGTGACTgtccactaacttttttttccagatggggaaactgaggcttggagcggttaactcactattcaaggccacaca-----gtagggacaaagttgagtccagaaatttgtctcctgaccaccttctactgtcc--------------tgttcacaacctctgccTCTTTCTTTCCCTTTCCCTGTTCCCTTGAGGTTGAAACCAGCACATCATGCACTCAGTCAGACTTTtgtattg--agagctcttttggaccccaagtgaaaaatactctaattcaaattggct----taagctaaagaaggactttatcaactaatataaattaaaagttcagggatatctggcttcaagggcatgtaggggt--ttaa-----------------------------------------------aagttccattcaatttaatctccatctctttgtatgtcttagctctgtgt--tgttgtgctggcttcattttcat-ggaccttcttcatggactccagcagatggaag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64783928 796 + 135191526 aatttttt-------------------atgtctgcagaaagcaaataaaccctccagggattgagtttttgaccttggcttcTGGCCAACTCCTATCATAGAGTAGAAAATATTATTAACCAGGCACTACATTCTTACTGGGCCCCAGCTGAGCCTTGATTCAATTTAGACTTTAATATAAATAGAACTGAAATGGTCAGCTAATCCATTTTAACAGTGAGACCCATTCTTCTAACAAAACCTTACAAGAAAACCTGGTATATGATATAGATAAGAGGAGAGCTAGTCTCTCAGAATGCAAGTCTGGGACTCTCAATCCCCAT---TACCCTCTCGCTGCT-------------------ACAGAG-------TTCTGTCTGAGAACTACTGACTgtccactaacttttttttccagatggggaaactgaggcttggagcggttaactcactattcaaggccacaca-----gtagggacaaagttgagtccagaaacttgtctcctgaccaccttctactgtcc--------------tgttcacaacctctgccTCTTTCTTTCCCTTTCCCTGTTCCCTTGAGGTTGAAACCAGCACATCATGCACTCACTCAGACTTTtgtattg--agagctcttttggcccccaagtgaaaaatactctgattcaaattggct----taagctaatgaaggactttatcaactaatataaattaaaagttcagggatatctggcttcaagggcatatgggggc--ttaa-----------------------------------------------aagttccattcaatttaatctccatctctttgtatgtcttagctctgtgt--tgctgtgctggcttcattttcatgggaccttcttcatggactccagcagatggaaa i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79753377 788 + 112192347 AATTTTTT-------------------ATGTCTGCAGAAAGCAAAT----CCTCCAGGGATTGAGTTCTTGACCTTGGCTTCTGGCCAACTCCTATC--AGAGTAGAAAATATTATTATCCAGGCACTACATTCTTACTGGGCCCCAGCTGAGCCTTGATTCAATTTAGACTTTAACATAAATAGAACTGAAGTGGTCAGCTAATCCATTTTAACAGTGAGACCCATTCTTGAAACAAAACCTTACAAGAAAGCCTGGCATATGATATAGATAAGAGGAGAGCCAGTCCCTTGGAATGCAAGCCTGGGACTCTCAATCCCCAT---TATCCTCTCGTTGCT---------------------AGAG-------TTCTGTCTGAGAACTACTGATTGTCCACTAA--TTTttttccagatggggaaactgaggcttggagctgttaactcactattcaaggtcacaca-----gtagggacaaacttgagtccagaaacttgtctcctgagcaccttctactgtcc--------------tgttcacaacctctgccTCTTTCTTTCCCTTTCCCTGTTCCCTTGTGGTTGAAACCAGCACATCACGCATTCACTCAGACTTTTGCATTGAcagagctcttttggctcccaagtgaaatatactctaattcaaattgtct----taagctaaagaaggactttatcaactaatataaattaaaagttcagggatatctggcttcaagggcatgtaggggc--ttaa-----------------------------------------------aagtgccattcaatttaatctccatctctttgtatgtcttagctctgcgt--tgttgtgctggcttcattttcatggggccttcctcatggactccagcagatggaag i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80833625 788 + 112612857 AATTTTTT-------------------ATGTCTGCAGAAAGCAAAT----CCTCCAGGGATTGAGTTCTTGACCTTGGCTTCTGGCCAACTCCTATC--AGAGTAGAAAATATTATTAACCAGGCACTACATTCTTACTGGGCCCCAGCTGAGCCTTGATTCAATTTAGACTTTAACATAAATAGAACTGAAGTGGTCAGCTAATCCATTTTAACAGTGAGACCCATTCTTGAAACAAAACCTTACAAGAAAGCCTGGCATATGATATAGATAAGAGGAGAGCCAGTCCCTTGGAATGCAAGTCTGGGACTCTCAATCCCCAT---TATCCTCTCGTTGCT---------------------AGAG-------TTCTGTCTGAGAACTACTGATTGTCCACTAA--TTTttttccagatggggaaactgaggcttggagctgttaactcactattcaaggtcacaca-----gtagggacaaacttgagtccagaaacttgtctcctgagcaccttctactgtcc--------------tgttcacaacctctgccTCTTTCTTTCCCTTTCCCTGTTCCCTTGTGGTTGAAACCAGCACATCACGCATTCACTCAGACTTTtgcattgacagagctcttttggctcccaagtgaaatatactctaattcaaattgtct----taagctaaagaaggactttatcaactaatataaattaaaagttcagggatatctggcttcaagggcatgtaggggc--ttaa-----------------------------------------------aagtgccattcaatttaatctccatctctttgtatgtcttagctctgcgt--tgttgtgctggcttcattttcatgggaccttcctcatggactccagcagatggaag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76882726 786 + 107442819 AATTTTTT-------------------ATGTCTGCAGAAAGCAAAT----CCTccagggattgagttcttgaccTTGGCTTCTGGCCAACTCCTATC--AGAGTAGAAAATATTATTAACCAGGCACTACATTCTTACTGGGCCCCAGCTGAGCCTTGATTCAATTTAGACTTTAACATAAATAGAACTGAAGTGGTCAGCTAATCCATTTTAACAGTGAGACCCATTCTTCTAACAAAACCTTACAAGAAAGCCTGGCATATGGTATAGATAAGAGGAGAGCCAGTCCCTTGGAATGCAAGTCTGGGACTCTCAATCCCCAT---TATTCTCTCGTTGCT---------------------AGAG-------TTCTGTCTAAGAACTACTGATTGTCCActaa--tttttttccagatggggaaactgaggcttggagctGTTAACTCActattcaaggtcacaca-----gtaggGACAAAGTTGAGTCCAGAAACTTGTCTCCTGAGCACCTTCTACTGTCC--------------TGttcacaacctctgc--ctttctttccctttccctgttCCCTTGTGGTTGAAACCAGCACATCACGCATTCACTCAGACTTTTGCATTGACAGAGCTCTTTTGGCCCCCAAGTGAAATATACTCTAATTCAAATTGTCT----TAAGCTAAAGAAGGACTTCATCAactaatataaattaaaagttcAGAGATATCTGGCTTCAAGGGCATGTAGGGGC--TTAA-----------------------------------------------AAGTGCCATTCAATTTAATCTCCATCTCTTTGTATGTCTTAGCTCTGCGT--TGTTGTGCTGGCTTCATTTTCATGGGACCTTCCTCATGGACTCCAGCAGATGGAAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81146133 773 + 108555830 AATTTTTT-------------------ATGTCTGCAGAAAGCAAAT----CCTCCAGGGATTGAGTTCTTGACCTTGGCTTCTGGCCAGCTCCTATC--AGAGTAGAAAATATTATTAACCAGGCCCTACATTCTTACTGGGCCCCAGCTGAGCCTTGATTCAATTTAGACTTTAACATAAATAGAACTGAAGTGGTCAGCTAATCCATTTTAACAGTGAGACCCATTCTTCCAACAAAACCTTGCAAGAAAGCCTGGCATATGATATAGATAAGAGGAGAGCCAGTCCCTCAGAATGCAAGTCTGGGACTCTCAATCCCCAT---TATCCTCTCATTGCT---------------------AGAG-------TTCTGTCTGAGAACTACTGATTGTCCACTAA--TTTttttccagatggggaaactgaggcttggagctgttaact---------------caca-----gtagggacaaagttgagtccagaaacttgtctcctgagcaccttctactgtcc--------------tgttcacaacctctgccTCTTTCTTTCCCTTTCCCTGTTCCCTTGTGGTTGAAACCAGCACATCACGCATTCACTCAGACTTTTGCATTGAcagagctcttttggcccccaggtgaaatatactctaattcaaattgtct----taagctaaagaaggactttatcaactaatataaattaaaagttcagggatatctggcttcaagggcatgtaggggc--ttaa-----------------------------------------------aagtgccattcaatttaatctccatctctttgtatgtcttagctctgcgt--tgttgtgctggcttcattttcatgggaccttcttcatggactccagcagatggaag i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111375660 792 - 210400635 AATTTTTT-------------------ATGTCTGCAGAAAGCTAATAAACCCTCTAGGGATTTATTTCTTGACCTTGGCTTCTGGCCAACTCCTAACATAGAGTAGAAAATATTA--ACCCAGGCAGTATATTCTTACTGGACCCCAGCTGAGCCTTGATCCAGTTTAGACTTTAATATAAATAGAACTGAAATGGTCAACTAATCCACTTTAACAGTAAGACCCATCCTTCCAACGAAACCTTACTAGAAAGCCTGGCATATGATATAGATAAGAGGAGAGCTAGTCCCTCACAATGCAAGTCTGGGACTCTGAATCCCCAT---TATCCTCACGTTGCC-------------------ATAGAG-------TTCTGTCTGAGAACTACTGATTgtccacttcc-ttttttttcagatgggaaaactgaggcttggagaggttaactcacttttcaaggccgcaca-----gtagggacaaagttgagtctaaaaactggtcttctgaccactttctactgtcc--------------tcttcacaacacctgtctcTTTCTTTCCCTTTCCCTGTTTGTTTGTGGTTGAAACCAGCACGTCATCCACTCACTCAGACTTCTGCAGTGAcagagctcttttagccctcaagtgaaaagtactctaattcaaattggct----taagctaaagaaagattttatcaactaatataaattaaaagttcagggatatctggctt--agggcatctaagggc--ttaa-----------------------------------------------aagtgtcattcaatttaatctccacctctttatttatcttagctctgggt--tgttgtactggcttc-tcttcaggggaccttcttcatggacaccagcagatggaag i calJac3.chr1 C 0 C 0 s mm10.chr19 38036896 828 - 61431566 TTTTTTTT-------------------CTGTCTGTGGAAAGTTAATAAACCCTCTAGGGACCACATTCTTGAACTCTGCTACTGATCAATTCCCAACATAGAGTGCAAAATAAT---AAGGAGACACGACATTCCTACTGGGCTCCAGCTGAGCTTTGATTCAACTTAAAC-CTGGTATCAACAGAACCAGTATGGTCAGCTAGCCCATTTTAATAGCAGGATGCATCATTCCATCAGAACTCCCTAAGATGGGCTGA-ATATAATACAGATAAGAGGGGATCCAGTCACAGAGAACAGACATCTAGGAACCGGAAAATCCATTGCTATCCTATCCTACCA-------------------CCTGAGGTCCACTCTCTGGTCAAGAACCACGGATTCCACAGTTCCTTTACTTTCCATA-AGGGACACTGAGGCTT---GTTTGTAACACACTGCTCAAACTCACATAGCTAGGTGTGGGCAAAAGCAAGATGGGAAACTAGGCTCAGGACCACCTTCCATAAACC--------------AGTCTACAA---------CTGTCTCTCCTCTT--CTGTTTCCCTGTGGTTGGAGCCTGCA----------TCATGTAGACATCTGAGCTAACAAAGTTCTTTTTTTTTTC--------TTTCTCCAAATAGAAATTTTCTGGTGTAAACTGAACAAAGAATTTATCATTTAACATAAATTAAAAGCTTGACAAGACCTGGCTTCAGGCTGACGTAAGGGA--TTAAAGATGGTATCAAACTATCAACTATAGTTGATATCAAACTATCAGACTAAATGCTATCTAGTTTGATTTCCTTCTCTTCAGGCATCTCGACCCTGTCTTCTATGGTGCTATCTTCATCCCCAGGGGACCTTCCCCATGGACTCCAGCGGGTGGAGG i mm10.chr19 I 1 C 0 s canFam3.chr1 35272467 808 - 122678785 AAttctttttttttttttttttttttAATGTCTGTGTTAAGCTAACAAACCCTCCAGAGATTGAGCTCTTGACCTTGGCTTCTGACCAACTCTTCGCATAGAGC--------------------CACCATGTTTTTACTGG-CCCCAGATGAGTCTTGACTCAATTTAGACTTAAGCATCAACAGAACTAGAACAGCTGATGAATATGTTTTAGCAGTAGAACCCA-CCTTCCAACAAAACCTTGTAAGAGAGCCTGACAAATAATACAGACAAGAAGGAAGTAAGTTGC--AAGATGGAAGTCTGGGAACCT-GATCCCCAT---AACCCTTCCGTTGCCTGAGGGGCTTTGAGGCTCCACAGAG-------GTCTGTTTGAGAATTACTGATTGTCCAA-----TTCCTTT------------actgaggcttggagaggttaactcactgttcgggaccacacaATGGGGCATGGGTAACGTTAAGGCAAGAGACTGGTCTC-TGGCTGCCTTCTGCTGTCAGGAAACACCCTTGGAGTTCACAACCCCTGCC----TCCTCTCCCCTCCCCATTTCCTCATGGTTGAAAGGCACTTATAGTGCACTCACTCTGACTTCTCTACCGACAGGGCTCCCTT-GCCACCAACTAAAACATACTctaattcagactgcct----taaacta---aaggacttcatcacctaatgtaaatgaaaaattcagggatatctggcttcaggtgcaacacgtggcttttaa-----------------------------------------------aaatgctatcctgttcagtctgtttcttttcatttctcttggtcctggcttctgctctgctggctgcattttcagggggccttcctcatggactctgacaggtggagg i canFam3.chr1 C 0 I 225 e nomLeu3.chr1a 57822992 0 - 122973662 C a score=516923.000000 s hg38.chr9_GL383541v1_alt 63332 174 + 171286 catccaacattcttatagctgatagtt-----ctcatggaaagaaaacttctttttcccaattgcgctaacaaaattcttataattgagtctcatttacctgagctggctcatgca--tgtatccctggaccaatcactgtggcaaagggtttggatgatctgatt---ggtcaagcctgggtc s panTro4.chr9 68629008 174 + 137840987 catccaacattcttatagctgatagtt-----ctcatggaaagaaaacttctttttcccaattgcgctaacaaaattcttataattgagtctcatttacctgagctggctcatgca--tgtatccctggaccaatcactgtggcaaagggtttggatgatctgatt---ggtcaagcctgggtc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64784724 174 + 135191526 catccaacattcttatagctgatagtt-----ctcatggaaagaaaactttttttccccaattgcgctaacaaaattctcataattgagcctcatttacctgagctggctcatgca--tgtatccctggaccaatcactgtggcaaagggtttggatgatctgatt---ggtcaagcctgggtc i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79754165 174 + 112192347 catccaacattcttctagctgatagtt-----ctcatggaaagaaaacttctttttcccaattgcgctaacaaaattctcataattgagcctcatttacctgagttggctcatgca--cgtatccctggaccaatcactatggcaaagggtttggatgatctgatt---gctcaagtctgggtc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80834413 174 + 112612857 catccaacattcttctagctgatagtt-----ctcatggaaagaaaacttctttttcccaattgcgctaacaaaattctcataattgagcctcatttacctgagttggctcatgca--cgtatccctggaccaatcactatggcaaagggtttggatgatctgatt---gctcaagtctgggtc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76883512 174 + 107442819 CATCCAACATTCTTCTAGCTGATAGTT-----CTCATggaaagaaaacttctttttccCAATTGTGCTAACAAAATTCTCATAATTGAGCCTCATTTGCCTGAGTTGGCTCACGCA--CGTATCCCTGGACCAATCACCATGGCAAAGGGTTTGGATGATCTGATT---GCTCAAGTCTGGGTC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81146906 174 + 108555830 catccaacattcttatagctgatagtt-----ttcatggaaagaaaacttctttttcccaattgtgctaacaaaattctcataattgagcctcatttacctgagttggctcatgca--cgtatccctggacgaatcactatggcaaagggtttggatgatctgatt---gttcaagtctgggtc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111376452 173 - 210400635 catccaacattcttacagctgatagtt-----ctcatagaaagaaaacttctctttcccattcgtgctaacaaaattctcataattgag-ctcatttacctgacctggctcatgca--tgtatccctggaccaatcactgtggcaaagggtttgaatgatctgatt---ggtcaagcctgggtc i calJac3.chr1 C 0 C 0 s mm10.chr19 38037724 170 - 61431566 CAGCCAACCTTTATATGGCTGAGAATCAGTCGATCATAGAAAGAAAGCTGCTCTGTCTTAG----------AAAATTCTTTCCA-CAAGCCACATTTACCTGGATTTG-TCATGTGATTTTATCTCAGGGCCAGTCACTTTAATAAAAGGGCTTGA--ATCTGATTAGCAGCCAAGCCTGGGTC i mm10.chr19 C 0 I 13 s canFam3.chr1 35273500 158 - 122678785 catcccacattcttacagttaatggtt-----cctaaggaaagaaggcttct----------------aacaaaattctcatgattgaggctcatttacctgaataggtccgtgtg--ctcactgctgaagcaaccttgtggccagagggcttgaatgacctgatt---ggtcagacctgagtc i canFam3.chr1 I 225 C 0 e nomLeu3.chr1a 57822992 0 - 122973662 C a score=2904516.000000 s hg38.chr9_GL383541v1_alt 63506 1128 + 171286 atgtaaccattcctggaaagggagttaagggtcagagtcagccccattcaaatcatttggactgaaaataaggaagggcagattttccaaagaaaaaccaggatactgttaaccagaaatgtcagggaatggatactaagaaggcacagacaacatgcatctactgcaACATCCTCAACCCTTAGTTGGTTTCTGAGTTTGATACTTAGAAACAAAGGCAAGAGAACCCATTGCAGAGCTGCCTGCACTCTTGCTACTTCTGTAG---GTCCCCAAACTGCTCTCTATTACGAACTTTTAAATTTTATTATTTCTCAATTAGGGAGTATTTAGGAATTTCTTGATTTTTTT---AAAAGGCATAGAATTTAAACATA-TCTAAATTTTTGGAGGCAATGGGTAGAAACATCT----AGAAG----------TCTTGACACACTTTAGAGTGTTCAGTTGGGAAAG--TAAAATAAGATCAGACAACTTTTACAGAAGTCTCTAAGCAGGATATGATGTTGACAACCCC-A-ATCTCTCTGCCTTCCTTGGTTCCATTCCATTTACCCCTGG--------GCTCCTACAGTTAAACCAAGA-------------AAGGCTTATAGCTGGGTCATCTCAGGTATGCACTATTAGACATGTTCTGGGAAGAAAACCCTGCCTTTTAGGTCTCCTAGGTGAAGAAA-GGTAAGAACAATGGGGGAAAAACAAGATTGCTTCAGAAAATCACCATTTTAATCCTGTAGTTTCGTAGAAGGATTCTAACTTTGGCTTCAACTAGAGGTATTTTAGGAGGCTGGCTGCTAGAagcatgggcatagaggtccag--------gtacttttctcgattctgc-----attgtctgattgactttgatcaagtttctcctcctctctgggccttagcttccaagtcctgaaaaggaaaggttgaaAATATAATAATAACAAACTTTCACGTAAATGagtgttttccaaagtgtagtaggcatacaatggtggttcatgagattatttcagggggcatgtggccatagttttctattttaataattatgtat----------------------------------------------tgatttttaaacatactagattcaccagtacaactactcccaag-ttcatggataata-tgctaattttcctgaaaccaactaaaataaatgctacatttttcaaagat s panTro4.chr9 68629182 1129 + 137840987 atgtaaccattcctggaaagggagttaagggtcagagtcagccccattcaaatcatttggactgaaaataaggaagggcagattttccaaagaaaaaccaggatactgttaaccagaaatgtcgggggatggatactaagaaggcacagacaacatgcatctactgcaACATCCTCAACCCTTAGTTGGTTTCTGAGTTTGATACTTAGAAACAAAGGCAAGAGAACCCATTGCAGAGCTGCCTGCACTCTTGCTACTTCTGTAG---GTCCCCAAACTGCTCTCTATTACGAACTTTTAAATTTTATTATTTCTCAATTAGGGAGTATTTAGGAATTTCTTGATTTTTTTT--AAAAGGCATAGAATTTAAACATA-TCTAAATTTTTGGAGGCAATGGGTAGAAACATCT----AGAAG----------TCTTGACACACTTTAGAGTGTTTAGTTCGGAAAG--TAAAACAAGATCAGACAACTTTTACAGAAGTCTCTAAACAGGATATGATGTTGACAACCCC-A-ATCTCTCTGCCTTCCTTGGTTCCATTCCATTTACCCCTGG--------GCTCCTACAGTTAAACCAAGA-------------AAGGCTTATAGCTGGGTCATCTCAGGTATGCACTATTAGACATGTTCTGGGAAGAAAACCCTGCCTTTTAGGTCTCCTAGGTGAAGAAA-GGTAAGAACAATGGGAGAAAAACAAGATTGCTTCAGAAAATCACCATTTTAATCCTGTAGTTTCATAGAAGGATTCTAACTTTGGCTTCAACTAGAGGTATTTTAGGAGGCTGGCTGCTAGAagcatgggcatagaggtccag--------gtacttttctcgattctgc-----attgtctgattgactttgatcaagtttcttctcctctctgggccttagcttccaagtcctgaaaaggaaaggttgaaAATATAATAATAACAAACTTTCACGTAAATGagtgttttccaaagtgtagtaggcatacaatggtggttcatgagattatttcagggggcatgtggccatagttttctattttaataattatgtat----------------------------------------------tgatttttaaacatactagattcaccagtacaactactcccaag-ttcatggataata-tgctaattttcctgaaaccaactaaaataaatgctacatttttcaaagat i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64784898 1131 + 135191526 atgtaaccatccctggaaagggagttaagggtcagagtcagccccattcaaatcttttggactgaaaataaggaagggcagattttccaaagaaaaaccaggatactgttaaccagaaatgttgggggatggatactaagaaggcatagacaacatgcatctactgcaACATCCTCAACCCTTAGTTGGTTTTTGAGTTTGATACTTAGAAACAAAAGCAAGAGAACTCATTGCAGAGCTGCCTGCACTCTTGCTACTTCTGTAG---GTCCCCAAACTGCTTTTTATTATGAACTTTTAAATTTTATTATTTCTTAATTAGGGAGTATTTAGGAATTTCTTGATTTTTTTTAAAAAAGGCATAGAATTTAAACATA-TCTAAATTTTTGGAGGCAATGGGTAGAAACATCT----AGAAG----------TCTTGATACACTTTAGAGTGTTTAGTTGGGAAAG--TAAAACAAGATCAGACAACTTTTACAGAAGTCTCTAAACAGGATATGATGTTGACAACCCC-A-ATCTCTCTGCCTTCCTTGGTTCCATTCCATTTACCCCTGG--------GCTCCTACAGTTACAGCAAGA-------------AAGGCTTATAGCTGGGTCATCTCAGGTATGCACTATTAGACATGTTCTGGGAAGAAAAGCCTGCCTTTTAGGTCTCCCAGGTGAAGAAA-GGTAAGAACAATGGGAGAAAAACAAGGTTGCTTCAGAAAATCACCATTTTAATCCTGTAGTTTCATAGAAGGATTCTAACTTTGGCTTCAACTAGAGGTATTTtaggaggctggctgctagaagcatgggcatagaagtccag--------gtacttttctcgattctgc-----attgtctgattgactttgatcaagtttctcctcctctctgggccttagcttccaagtcctgaaaaggaaaggttgaaAATATAATAATAACAAACTTTCACGTAAATAagtgttttccaaagtgtagtaggcatacaatggtggttcatgagattatttcagggggcacgtggccatagttttctattttaataattacatat----------------------------------------------tgatttttaaacatactagattcaccagtacaacaactcccaag-ttcatgggtaata-tgctaattttcatgaaaccaactgaaataaatgctacatttttcaaagat i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79754339 1115 + 112192347 atgtaaccatccctggaaagagggttaagggtcagagtcagccccattcaaatcatttggactgaaaataaggaagggcagattttccaaagaaaaagcagagtactgttaaccagaaatgtcgggggatgggtaataagaagtcacagacaatatgcatctactgcaACATCTTCAACCTTTAGTTGGTTTTTGAGGTTGAGACTTAGAAACAAAGGCAAGAGGACTCATTGCAGAGCTGCCTGCACTGTTGCTGCTTCTGTAG---GTCCCCAAACTGCTCTCTATTATGTACTTTTAAATTTTATTATTTCTCAGTTAGGGAGTATTTAGGAATTTCTTGATTT-------TAAAGGCATCGAATTTAAACATA-TCTAAATTTTTGGAAGCAATGGGTGGAAACATCC----AGAAG----------GCTTGATACACTTGAGAGTGTTT-----GGAGAG--TAAAACAAGATCAGACGACTTTTCCAGAAGTCTCCAAACAGGATATGATGTTGACAACCCC-A-ATCTCTCTGCCTTCCTTGGTTCCGTTCCATTTACCCCTGG--------GCTCCTACAGTTAAACCAAGA-------------AAGGCTTATAGCTGGGCCATCTCAGGTATGCAGTATT-GACATGTTCTGGGAAGAAATGCCTGCCTTTTAGGTCTCCTAGGTGAAGAAA-GGTAAGAACAATGGGAGAAAAACAAGGGTGCTTCAGAAAATCATCATTTTAATCCTGTAGTTTCACAGAAGGATTCTAACTTTGGCTTCAACTAGAGGTATTTtaggaggctggctggtagaagcactggcatagaggtccag--------gtacttttctcgattctgc-----gttgtctgattgactttgatcaagtttctcctcctttctgggccttagcttccaagtcctgaaaatgaaaggttgaaAATATAATAATAACAAACTTTCACGTAAATGagtgttttctaaggtgtagtaagcatacaatggtggttcatgagattatttcagggggcacgtagccatagttttctattctaataattatgtat-------------------------------------------------tttttaaacatattagattcaccagtacaacaactcccaag-tgcatggataata-tgctaattttcatgaaaccaattaaaataaatgctatagttttcaaagat i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80834587 1115 + 112612857 atgtaaccatccctggaaagagggttaagggtcagagtcagccccattcaaatcatttggactgaaaataaagaagggcagattttccaaagaaaaagcagagtactgttaaccagaaatgtcgggggatgggtaataagaagtcacagacaatatgcatctactgcaACATCTTCAACCTTTAGTTGGTTTTTGAGGTTGAGACTTAGAAACAAAGGCAAGAGGACTCATTGCAGAGCTGCCTGCACTGTTGCTGCTTCTGTAG---GTCCCCAAACTGCTCTCTATTATGTACTTTTAAATTTTATTATTTCTCAGTTAGGGAGTATTTAGGAATTTCTTGATTT-------TAAAGGTATCGAATTTAAACATA-TCTAAATTTTTGGAAGCAATGGGTGGAAACATCC----AGAAG----------GCTTGATACACTTGAGAGTGTTT-----GGAGAG--TAAAACAAGATCAGACGACTTTTCCAGAAGTCTCCAAACAGGATATGATGTTGACAACCCC-A-ATCTCTCTGCCTTCCTTGGTTCCGTTCCATTTACCCCTGG--------GCTCCTACAGTTAAACCAAGA-------------AAGGCTTATAGCTGGGCCATCTCAGGTATGCAGTATT-GACATGTTCTGGGAAGAAATGCCTGCCTTTTAGGTCTCCTAGGTGAAGAAA-GGTAAGAACAATGGGAGAAAAACAAGGGTGCTTCAGAAAATCATCATTTTAATCCTGTAGTTTCACAGAAGGATTCTAACTTTGGCTTCAACTAGAGGTATTTTAggaggctggctggtagaagcactggcatagaggtccag--------gtacttttctcgattctgc-----gttgtctgattgactttgatcaagtttctcctcctttctgggccttagcttccaagtcctgaaaatgaaaggttgaaAATATAATAATAACAAACTTTCACGTAAATGagtgttttctaaggtgtagtaagcatacaatggtggttcatgagattatttcagggggcacgtagccatagttttctattctaataattatgtat-------------------------------------------------tatttaaacatattagattcaccagtacaacaactcccaag-ttcatggataata-tgctaattttcatgaaaccaattaaaataaatgctatagttttcaaagat i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76883686 1112 + 107442819 ATGTAACCATCCCTGGAAAGGCGGTTAAGGGTCAGAGTCAGCCCCATTCAAATCATTCGGACTGAAAATAAGGAAGGGcagattttccaaagaaaaagcaGAGTACTGTTAACCAGAAATGTCAGGGGATGGGTAATAAGAAGTCACAGACAATATGCATCTACTGCAACATCTTCAACCTTTAGTTGGTTTTTGAGGTTGAGACTTAGAAACAAAGGCAAGAGGACTCATTGCAGAGCTGCCTGCACTGTTGCTACTTCTGTAG---GTCCCCAAACTGCTCTCTATTATgtactttcaaattttattatttctcaattAGGGAGTATTTAGgaatttcttgattt-------taaagGCATAGAATTTAAACGTA-TCTAAATTTTTGGAAGCAATGGGTGGAAACATCC----AGAAG----------GCTTGATACACTTGAGAGTGTTTGGTTAGGAGAG--TAAAACAAGATCAGACGACTTTTCCAGAAGTCTCCAAACAGGATATGATGTTGACAACCCA-A-ATCTCTCTGCCTTCCTTGGTTCCGTTCCATTTACCCCTGG--------GCTCCTACAGTTAAACCAAGA-------------AAGGTTTATAGCTGGGTCATCTCAGGTATGCACTATTAGACATGTTCTGGGAAGAAACGCCTGCCTTTTAGGTCTCCTAGGTGAAGAAA-GGCAAGAACAATGGGAGAAAAACAAGGGTGCTTCAGAAA---------CTAATCCTGttgtttcacagaaggtttctaACTTTGGCTTCAACTAGAGGTATTTTAGGAGGCTGGCTGGTAGAAGCATGGGCATAGAGGTCCAG--------GTACTTTTCTTGATTCTGC-----ATTGTCTGATTGACTTTGATCAAGTTTCTCCTCCTTTCTGGGCCTTAGCTTCCAAGTCCTGAAAATGAAAggttgaaaatataataataacaaacttTCACGTAAATGAGTGTTTTCTAAGGTGTAGTAAGCATACAATGGTGGTTCATGAGATTATTTCAGGGGGCACGTATTCATAGTTTTCTATtctaataattatgtat-------------------------------------------------tttttaaacatattagaTTCATCAGTACAACAACTCCCAAG-TTCATGGATAATA-TGCTAATTTTCATGAAACCAACTAAAATAAATGCTATAGTTTTCAAAGAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81147080 1117 + 108555830 atgtaaccattcctggaaagggggttaagggtcagagtcagccccattcaagtcctttggactgaaaataaggaagggcagattttccaaagaaaaaccagggtactggtgaccagaaatgtcgggggatggataataagaaagcacagacaataggcatctactgcaACATCTTCAACCTTTAGTTGGTTTTTGAGGTTGAGACTTAGAAACAAAGGCAAGAGGACTCATTGCAGAGCTGCCTACACTGTTGCTGCTTCTGTAG---GTCCCCAAACTGCTCTCTATTATGTACTTTTAAATTGTATTATTTCTC----AGGGAGTATTTAGGAATTTCTTGATTT-------TAAAGGCATGGAATTTAAACATA-TCTAAATTTTTGGAAGCAATGGGTGGAAACATCC----AGAAG----------GCTTGATACACGTGAGAGTGTTTGGTTTAGAGAG--TAAAACAAGATCAGACGACTTTTCCAGAAGTCTCCAAACAGGATATGATGTTGACAACCCC-A-ATCTCTCTGCCTTCCTTGGTTCCGTTCCATTTACCCCTGG--------GCTCCTACAGTTAAACCAAGA-------------AAGGCTTATAGCTGGGCCATCTCAGGTATGCAGTATTAGACATGTTCTGGGAAGAAACGCCTGCCTTTTAGGTCCCCTAGGTGAAGAAA-GGTAAGAACAATGGGAGAAAAACAAGGGTGCTTCAGAAAATCACCGTTTTAATCCTGTAGCTTCACAGAAGGATTCTAACTTTGGCTTCAACTAGAGGTATTTTAGGAGGCTGGCTGGTAGAAGCATTGGCATAgaggtccag--------gtacttttctcgattctgc-----gttgtctgattgactttgatcaagtttctcctcctttctgggccttagcttccaagtcctgaaaaggaaaggttgaaAATATAATAATAACAAACTTTCACGTAAATGagtgttttccaaggtgtagtaagcatacaatggtggttcatgagattatttcagggggcacgtagccatagttttctattctaataattatgtct-------------------------------------------------tttttaaacatattagattcaccagtacgacgactcccaag-ttcatggataata-tgctaattttcatgaaaccaactaaaataaatgctatagttttcaaagat i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111376625 1093 - 210400635 atgtagccatccctggaaagggggttaagggtcggggtcagccccattcaaatcatgtggactaaaaataaggaagggaagattttccaaagaaaaaccagggtaatgttaaccagaaatgtggggggatggatgctgagaaggcacagacaacatgcatctactgcaGCATCCTCCACTCTTAGTTGGTTTTTGAG------------------------GAGGGCTCATTGCAGAGCTGTCTGCACTGTTGCTACTTCTGGAG---GTCCCCAAACTACTCTCTATTATGGACTTTTAAATTTTATTATTTCTCAATTAGAGAGTATTTAGGAATTTCTTGATTTTTAA---AAAAGGCATAGAATTTAAAC----CCGATATTTTTTGAGGCAATGGGTAGAAACATCC----AGAAG----------GTTTAATACACTTGGCAGTGTTTGGTTGAGAGAG--TAAAACAAGATCAGACAACTTTTAGAGACATCTCCAAACTGGATATTGTGTTGACAACCCCAA-ATCTCTCTGCCTTCTTCTGTTCCATTCCATTTGCCTCTGG--------GCACCTACAGTTAAACCAAGA-------------AAGGCTTATA---GGGTCATCTCAGGTATGCACTGTTAGGCATGTTCTGGGAGGAAAAGGCTGCCTTTCAGATCTCCTAGGTGAAGAAA-GAGATGGA-AATGGAAGACAGACAAGGTTGCTTCAGAAAATTACCATTTTAATCCTGTAGTTTTGTAGAAGGATTCTAACTTTGGCTTCAACTAAAGGTATTTTAGGAggctggctggtggaaacatgggcctagaggcccag--------gtacttttctcggttctgc-----attgtctggttgactttgatcgaatttctcatcctctctgggccttcgcttccaagtcctgaaaaggaaaggTTGCAAAT---ATAATAACAAAATTTCACATAAATAagtgttttccaaagtgtagtatgcatacaatggtggttcatgagattattgcgggacacatg---ccatagttttctattttaataattatgtat----------------------------------------------ttgttttcaaacatactagattcaccagtacagcaactcccaagttttatggataata-tgctaattttcatgaaaccaattaaaataaatgctatatttttcaaagat i calJac3.chr1 C 0 C 0 s canFam3.chr1 35273658 1197 - 122678785 atgtgaccactcctggaaggggg-----gagttggggtcagtgccacacaaaccatttgggctgaaactaaagaaaggtagatgctgcaaggaaaaaacaacctactgttagccagaactgtgagggaatgaatgcctgaaagtga-aaatgacacacatcTCATGCAACAGCCTCTATTCTT-TTTGGCCTTTGAGACTCTTCCTTGGAAACTGAGGTAAGAAGCCTCACCACAGAGTTGCCTGCTTTGTTGCTGCTTCTGTAGGAAGACCTCAGACTCCTCTCTATCACAGACTCTTTCATGGTATTATTGCTCAATTTGGGAATGTATAGGGATTTTAAAATTCTT-----AACAAGCACAGAATTTAAACATGCCCTATATTTTTGGAGGCAATTGGTGGAAGTGTTCCATTAGAGGATTTGACACAACTTGATACATTTGAGAGCGTGTAATTGGGAGTGGATGAAACAAGGTCAGAAAACTTCCAGAAAAGTCTCTAAACAGCACACAGTTTTGACACCCCC-AGATTGCTCTGCTGTC-----TTCCATTTCATTTCCCCCCGGGGCAGTGTGTTTGTACATGCCAAGCAAGGATATGAAGTGAGCAAGGCGCATGGCTGGGCCAGCTCAGGTGTGTGCTGTCAGGCATGTTCTGGGAGGGCAAGGCTGCCTTT-AGGTTTCCTAGGTGAAGAAATAATATAGACAGTGGTGAAAGAGTGAGATTGGTTTAAGGTATCACAGTGTTCATCCTATGATTTTGCAGCAGGATT-TAACTTAGGCTTCAACTAGAGGTATTTtaggagactggctaatgaaaatgtggacctggaaatccagaaacttgtgttcttatttcagttctgcaatagattgtctggttgactttggtctaatttctcaccccttataggccttagtttcTAAGTCTTGAAAACTAAAGTTTGAC------ATTATAACTGACTTTTACATAAATcagtgttccccaaagtgtactgtgcacaccatggtggctcataggactattttaggtggagcatg-ccatatttgtaaa----aataattatgtatattttcccagtttttttgagatataataatatataacatgttttatgtattttttaatgtactagactaatcagcatagcaactcccaaatttcatggatagcattgctaa-------ggaaccaggtaaaataaatattatattttt-aaagat i canFam3.chr1 C 0 C 0 e mm10.chr19 38037894 13 - 61431566 I e nomLeu3.chr1a 57822992 0 - 122973662 C a score=684146.000000 s hg38.chr9_GL383541v1_alt 64634 244 + 171286 gagtacagttaaagaaaaatattaagtaatattagtaccattggtgcacagatatggcaaaaccccaaaagtggtacatgaatgatagaatttgaggagac--TGCTATTTACGACTTAAATATAAA---ATATTTTGATAGTATAGTATTACAATGATTTGACAGACGTAAAATCTGAGACCATGCtttactgagaatgtacactacaccaggaattgtgctgggcactttccatgcatgatgttatt s panTro4.chr9 68630311 244 + 137840987 gagtacagttaaagaaaaatattaagtaatattagtaccattggtgcacagatatggcaaaaccccaaaagtggtacatgaatgatagaatttgaggaaac--TGCTATTTACGACTTAAATATAAA---ATATTTTGATAGCATAGTATTACAATGATTTGACAGATGTAAAATCTGAGACCATGCtttactgagaatgtacactacaccaggaattgtgctgggcactttccatgcatgatattatt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64786029 244 + 135191526 gagtacagttaaagaaaaatattaagtaatattagtaccattggtgcacagatatggcaaaaccccaaaagtggtacatgaaggatagaatttgaggaaac--TGCTATTTACGACTTAAATATAAA---GTATTTTGATAGCATAGTATTACAATGATTTGATAGATGTAAAATCTGAGACCATGCtttactgagaatgtacactacaccaggaattgtgctgggcactttctatgcatgatattatt i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79755454 243 + 112192347 gagtacagttaaacaaaaacattaagtaacattagtaccattggtgcacagataaggcaaaaccccaaaagtggtatatgaatgataaaatttgaggaaac--TGCTATTTACAACTTAAATATAAA---AT-TTTTGATAGCATAGTATTACAATGATTTGACAGATGTAAAATCTGAGACCATGCtttactgagaatgtacactacaccaggaattgtgctgggcactttctatgtatgatattatt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80835702 243 + 112612857 gagtacagttaaacaaaaacattaagtaacattagtaccattggtgcacagatatggcaaaaccccaaaagtggtatatgaatgatagaatttgaggaaac--TGCTATTTACAACTTAAATATAAA---AT-TTTTGATAGCATAGTATTACAATGATTTGACAGATGTAAAATCTGAGACCATGCtttactgagaatgtacgctacaccaggaattgtgctgggcactttctatgtatgatattatt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76884798 243 + 107442819 GAGTACagttaaacaaaaacattaagtAATATTAGTACCATTGGTGCACagatatggcaaaaccccaaaaGTGGTACATGAATGATAGAGTTTGAGGAAAC--TGCTATTtatgacttaaatataaa---at-ttttgatAGCATAGTATTACAATGATTTGACAGATGTAAAATCTGAGACCATGCTTTACTGAGAATGTACACTACACCAGGAGTTGTGCTGGGCACTTTCCATGTAtgatattatt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81148197 242 + 108555830 gagtacagttaagcaaaaacattaagtaatattagtaccattggtgcacagatatggcaaaaccccaaaagtggtgtatgaatgataaaatttgaggaaac--TGCT-TTTACAACTTAAATATAAA---AT-TTTTGATAGCATAGTATTACAATGATTTGACAGATGTAAAATCTGAGACCATGCtttactgagaatgtacgctacaccaggaattgtgctgagcactttctatgtatgatattatt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111377718 226 - 210400635 gagtacagtt----aaaaacgttaagtagtattagaaccacttgtgcacagatatggcaaaa-cccaaaagcggtacatga-------------aggaAGC--TGCTATTTACAACTCAAATATAAA---CTTTTTTGATAGCATAGTATTACAACGATTTAACAGATGTGAAATCTGAGACCATGCtttactgagaatgtacactacaccagtaactgtgctggacagtttccatgcatgttattatt i calJac3.chr1 C 0 C 0 s mm10.chr19 38037907 200 - 61431566 GAATACAATTAGAG----------------ATTAATAGTAGTAGTACACGG---TGTCAAGAGCTCCGAGACTCTGAACGTAGTATAGAATTGCAGGAAAC------------------ACAGTAAA---ATACATCGGTAGAATAGCATTACAATGGCTTGACAGACATGAAATCTAagctcctg-tttgctgagaacttaccttctaccaagtagtacactaggtac-----atgcatcatatt--- i mm10.chr19 I 13 C 0 s canFam3.chr1 35274855 238 - 122678785 gaatatggttaaagaaaaacattaaata-----------attgctacacagctaaagcaaaaccccaagggtggtacataaattatagaatttgagaaaACTCTGATATATATGACCTCAATATAAAAACATTTTTTGATAGAGTAGTATAATAATGATTTGACAGTTAGGGAATCTGAGACCATGCTTTACTGAGAACCTATACTACACCAATTGCTGTACTGGGGACTTCCCATGAGTGAGATTATT i canFam3.chr1 C 0 C 0 e nomLeu3.chr1a 57822992 0 - 122973662 C a score=13692.000000 s hg38.chr9_GL383541v1_alt 64878 5 + 171286 aaatt s panTro4.chr9 68630555 5 + 137840987 aaatt i panTro4.chr9 C 0 C 0 s rheMac3.chr15 79755697 5 + 112192347 aaatt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80835945 5 + 112612857 aaatt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76885041 5 + 107442819 aaatt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81148439 5 + 108555830 aaatt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111377944 5 - 210400635 aaatt i calJac3.chr1 C 0 C 0 s mm10.chr19 38038107 5 - 61431566 aagta i mm10.chr19 C 0 C 0 s canFam3.chr1 35275093 5 - 122678785 AAATT i canFam3.chr1 C 0 C 0 e ponAbe2.chr9 64786273 0 + 135191526 C e nomLeu3.chr1a 57822992 0 - 122973662 C a score=59924.000000 s hg38.chr9_GL383541v1_alt 64883 35 + 171286 tacacaaacgtctctgtgaggttcatattattatc s panTro4.chr9 68630560 35 + 137840987 tacacaaacgtctctgtgaggttcatattattatc i panTro4.chr9 C 0 C 0 s rheMac3.chr15 79755702 32 + 112192347 ttcacaaacgtctctgtgagattca---tattatc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80835950 32 + 112612857 ttcacaaacgtctctgtgagattca---tattatc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76885046 35 + 107442819 ttcacaAACGTCTCTGTGAGATtcatattattatc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81148444 35 + 108555830 ttcacaaacgtctctgtgagattcatattattatc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111377949 35 - 210400635 ttcacaaatatctctgtgaggttcatagtgtcagc i calJac3.chr1 C 0 C 0 s mm10.chr19 38038112 34 - 61431566 ttcacctacatccctttgagg-tCATGTTGTGATC i mm10.chr19 C 0 C 0 e canFam3.chr1 35275098 0 - 122678785 C e ponAbe2.chr9 64786273 0 + 135191526 C e nomLeu3.chr1a 57822992 0 - 122973662 C a score=140422.000000 s hg38.chr9_GL383541v1_alt 64918 82 + 171286 tccattttacgcctgagaaactaaggcttggaggaggttgattacatttcctgaaatcatgcactgattggctgagttgtta s panTro4.chr9 68630595 82 + 137840987 tccattttacgcctgagaaactaaggcttggaggaggttgattacatttcctgaaatcatgcactgattggctgagttgtta i panTro4.chr9 C 0 C 0 s rheMac3.chr15 79755734 81 + 112192347 tcca-tttacacctgagaaactaaggcttggagaaggttgatgacatttcctgaaatcatgcactgattggctgagttgtta i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80835982 81 + 112612857 tcca-tttacacctgagaaactaaggcttggagaaggttgatgacatttcctgaaatcatgcactgattggctgagttgtta i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76885081 81 + 107442819 tcca-tttacaCCTGAGAAACTAAGGCTTGGAAGAGGTTgattacattttctgaaatcatGCACTGATTGGCTGAGTTGTTA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81148479 81 + 108555830 tcca-tttacacctgagaaactaaggcttggaggaggttgattacatttcctgaaatcatgcactgattggctgagttatta i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111377984 77 - 210400635 tccattttgtacctgagaaactaaggcttggaggaggttgattacattttctgaagtcatgcactgattggctg-----tta i calJac3.chr1 C 0 C 0 e mm10.chr19 38038146 0 - 61431566 C e canFam3.chr1 35275098 0 - 122678785 C e ponAbe2.chr9 64786273 0 + 135191526 C e nomLeu3.chr1a 57822992 0 - 122973662 C a score=162071.000000 s hg38.chr9_GL383541v1_alt 65000 87 + 171286 ttctaagtaagagctacctgattctaaaatccaggctctttctgtcagctacactattaccccAGGACTCATGGTTAAC-AGAGAGAG s panTro4.chr9 68630677 87 + 137840987 ttctaagtaagagctacctgattctaaaatccaggctctttctgtcagctacactattaccccAGGACTCATGGTTAAC-AGAGAGAG i panTro4.chr9 C 0 C 0 s rheMac3.chr15 79755815 87 + 112192347 ttctaagtaagagctacttgattctaaaatccaggctctttctatcagctatactattaccccAGGGCTCATGGTTAAC-AGAGAGGG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80836063 87 + 112612857 ttctaagtaagagctacttgattctaaaatccaggctctttctatcagctatactattaccccAGGGCTCATGGTTAAC-AGAGAGGG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76885162 74 + 107442819 TTCTAAGTAAGAGCGACTTGATTCTAAAG-------------TATCAGCTACACTATTACCCCAGGGCTCATGGTTAAC-AGAGAGGG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81148560 74 + 108555830 ttctaagtaagagctacttgattctaaaA-------------TATCAGCTACACTATTACCCCAGGGCTCATGGTTAAC-AGAGAGGG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111378061 84 - 210400635 ttc----taagaactccctgattataaaatccaggctctttctatcagctacaccgttaccccAGGACTCATGGTTAACAAGAGAGGG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35275098 86 - 122678785 TTTAAAGTAAGAACTACCTGGTTTTAAAA-CTATGTTCTTTCCACCAGCTGCACTATCCCTCCAGGGCTCATGGCTAAC-AGAGAGGC i canFam3.chr1 C 0 C 0 e mm10.chr19 38038146 0 - 61431566 C e ponAbe2.chr9 64786273 0 + 135191526 C e nomLeu3.chr1a 57822992 0 - 122973662 C a score=16235.000000 s hg38.chr9_GL383541v1_alt 65087 7 + 171286 TAAACCA s panTro4.chr9 68630764 7 + 137840987 TAAACCA i panTro4.chr9 C 0 C 0 s rheMac3.chr15 79755902 7 + 112192347 TAAATCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80836150 7 + 112612857 TAAATCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76885236 7 + 107442819 TAAATCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81148634 7 + 108555830 TAAATCA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111378145 7 - 210400635 TAAACCA i calJac3.chr1 C 0 C 0 s mm10.chr19 38038146 7 - 61431566 CAAGTCA i mm10.chr19 C 0 C 0 s canFam3.chr1 35275184 7 - 122678785 AAAaaca i canFam3.chr1 C 0 I 810 e ponAbe2.chr9 64786273 0 + 135191526 C e nomLeu3.chr1a 57822992 0 - 122973662 C a score=10948.000000 s hg38.chr9_GL383541v1_alt 65094 4 + 171286 GGAC s panTro4.chr9 68630771 4 + 137840987 GGAC i panTro4.chr9 C 0 C 0 s rheMac3.chr15 79755909 4 + 112192347 GGAC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80836157 4 + 112612857 GGAC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76885243 4 + 107442819 GGAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81148641 4 + 108555830 GGAC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111378152 4 - 210400635 GGAC i calJac3.chr1 C 0 C 0 s mm10.chr19 38038153 4 - 61431566 GGAC i mm10.chr19 C 0 C 0 e canFam3.chr1 35275191 810 - 122678785 I e ponAbe2.chr9 64786273 0 + 135191526 C e nomLeu3.chr1a 57822992 0 - 122973662 C a score=222977.000000 s hg38.chr9_GL383541v1_alt 65098 130 + 171286 AGCATCTTCTGACTCCAAATCCTGGGCACTTGTTCTCTAGAATTCACAATGCTTCAAATTCCAGAGGGGCTTTCTGATGCTCTTCACAGTCTAGACAGGGCTGAACATGTGCATTCAGAATATGAAGCTT s panTro4.chr9 68630775 130 + 137840987 AGCATCTTCTGACTCCAAATCCTGGGCACTTGTTCTCTAGAATTCACAATGCTTCAAATTCCAGAGGGGCTTTCTGATGCTCTTCACAGTCTAGACAGGGCTGAACATGTGCATTCAGAATATGAAGCTT i panTro4.chr9 C 0 C 0 s rheMac3.chr15 79755913 124 + 112192347 AGCATCTTCTGACTCCAAATCCTGG------GTTCTCTAGAATTCACAATGCTTCAAATTCCAGAGGGGCTTTCCAATGCTCTTCACAGTCTAGACAGGGCTGGACATGTGCATTCAGAATATGAAGCTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80836161 124 + 112612857 AGCATCTTCTGACTCCAAATCCTGG------GTTCTCTAGAATTCACAATGCTTCAAATTCCAGAGGGGCTTTCCAATGCTCTTCACAGTCTAGACAGGGCTGGACATGTGCATTCAGAATATGAAGCTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76885247 130 + 107442819 AGCATCTTCTGACTCCAAATCCTGGGTACTTGTTCTCTAGAATTCACAATGCTTCAAATTCCAGAGGGGCTTTCCAATACTCTTCACAGTCTAGACAGGGCTGGACATGTGTATTCAGAATATGAAGCTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81148645 124 + 108555830 AGCATCTTCTGACTCCAAATCCTGG------GTTCTCTAGAATTCACAATGCTTCAAATTCCAGAGGGGCTTTCCAATGCTCTTCACAGTCTAGACAGGACTGGACATGTGCATTCAGAATATGAAGCTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111378156 130 - 210400635 AGAATCTTCTGACTCCAAATCCTGGGCACTTGTTCTCTAGAATTCTCAGTGCTTCAAATTCCAGAGGGGCCTTTTGATGTTCTTCATAGTCTAGACAGGGTTGGACATGAGGTTTCCAAATATGAAGTTT i calJac3.chr1 C 0 C 0 e mm10.chr19 38038157 0 - 61431566 C e canFam3.chr1 35275191 810 - 122678785 I e ponAbe2.chr9 64786273 0 + 135191526 C e nomLeu3.chr1a 57822992 0 - 122973662 C a score=40521.000000 s hg38.chr9_GL383541v1_alt 65228 24 + 171286 CATACGTCATCCATTTCTGCAAAT s panTro4.chr9 68630905 24 + 137840987 CATACGTCATCCATTTCTGCAAAT i panTro4.chr9 C 0 C 0 s rheMac3.chr15 79756037 24 + 112192347 CATAGGTCATCCATTTCTGTAAAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80836285 24 + 112612857 CATAGGTCATCCATTTCTGTAAAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76885377 24 + 107442819 CATAGGTCATCCATTTCTGTAAAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81148769 24 + 108555830 CATAGGTCATCCATTTCTGTAAAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111378286 23 - 210400635 CATATGTCATACATTTCTGCAAT- i calJac3.chr1 C 0 C 0 s mm10.chr19 38038157 23 - 61431566 CCTACTTGATTCAGTTCTGCAAG- i mm10.chr19 C 0 C 0 e canFam3.chr1 35275191 810 - 122678785 I e ponAbe2.chr9 64786273 0 + 135191526 C e nomLeu3.chr1a 57822992 0 - 122973662 C a score=1939392.000000 s hg38.chr9_GL383541v1_alt 65252 822 + 171286 AATCCCTTGCCCTTTATCATATCAATGAGTT---GTAGCTCTAATTTTATGCATATTTGAATTTTTTGCATCTTA-AAAATTGCTTTTGTGCTCTACAAGTTTTGGGGAGCTGTTCAGTGTGCACTCTAGTAGGGACTGGCTGAGAGCTGGCAGGAAAATCTAGGGAATTATAAATAGGCTCTTCCTCAGAATGTATACA-AGATACAAGGGGA-GGGGAGTGGGGACTCTGGGTGGAGAGGGGAAGAGAAAAGAGTGAAGAAATGTTGTGGTGAGGAGAGAAGCTGGATGGAAAAGTTGGGAATACACCAAATACAAACTCCATATGGTTTAGTAATTTTATTTCAGGCTAGCTTTAGGTCCAAATAAATCTTAGGAACTATTGGTACAATGACTCaattgtacatttctcataggactgcagtgattacttaaatagattagtatttagtgattagcacatgacttgac----ccat------aataagtcctcctgcaaatggtagctgttatAGTTGT-GGAGATAATCATGTATGTTGTTGAAAATGAGCC--TTTTTAACCTAAAT--ATGTCTTATACTCATGTAAATA--------------------GAAGGTGTTTTCAAAACTCATTAAGTTCTGCATTGAAATGATT-----------------------------ATGAATCAAAAAACGAATGAACTA--GGGGAACATGACAACATGGATGACAGATATCCAGTtaattttcttaatacataaagaatttttgtaaatcagtactaaaagcccaacaacccaatt--aaaaaaataggccaaggatgt--------cacacacacacacacacacacacacacataaaaatatcagtggcttttaaacatacaaaaaga s panTro4.chr9 68630929 814 + 137840987 AATCCCTTGCCCTTTATCATATCAATGAGTT---GTAGCTCTAATTTTATGCATATTTGAATTTTTTGCATCTTA-AAAATTGCTTTTGTGCTCTACAAGTTTTGGGGAGCTGTTCAGTGTGCACTCTAGTAGGGACTGGCTGAGAGCTGGCAGGAAAATCTAGGGAATTATAAATAGGCTCTTCCTCAGAATGTATACA-AGATATGAGGGGA-GGGGAGTGGGGACTCTGGGTGGAGAGGGGAAGAGAAAAGAGTGAAGAAATGTTGTGGTGAGGAGAGAAGCTGGATGGAAAAGTTGGGAATACACCAAATACAAACTCCATATGGTTTAGTAATTTTATTTCAGGCTAGCTTTAGGTCCAAATAAATCTTAGGAACTATTGGTACAATGACTCaattgtacatttctcataggactgcagtgattacttaaataaattagtatttagtgattagcacatgacttgac----ccat------aataagtcctcctgcaaatggtagctgttatAGTTGT-GGAGATAATCATGTATGCTGTTGAAAATGATCC--TTTTTAACCTAAAT--ATGTCTTACACTCATGTAAATA--------------------GAAGGTGTTTTCAAAACTCATTAAGTTCTGCATTGAAATGATT-----------------------------ATGAATCAAAAAAAGAATGAACTA--GGGGAACATGACAACATGGATGACAGATATCCAGTtaattttcttaatacataaagaatttttgtaaatcagtactaaaagcccaacaacccaatt--aaaaaaataggccaaggatgt--------cacacacacacacacacaca--------taaaaatatcagtagcttttaaacatacaaaaaga i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57822992 818 - 122973662 AATCCCCTGCCCTT----GTATCAATGAGTT---GTAGCTCTAATTTTATGCATATTTGAATTTTTTGCATCTTA-AAAATTGTTTTTGTGCTCTACAAGCTTTGGGGAGCTGTTCAGTGTGCACTCTAGTAGGGACTGGCTGAGAGCTGGCAGGAAAATCTAGGGAATTATAAATAGGCTCTTCCTCAGAATGTATACA-AGATATGAGGGGA-GGGGAGTGGGGACTCTGGGTGGAGAGGGGAAGAGAAAAGGGTGAAGAAATGCTGTGGTGAGGAGAGAAGCTGGATGGAAAAGTTGGGAATACACCAAATACAAACTCCATATGGTTTAGTAATTTTATTTCAGGCTAGCTTTAGGTCCAAATAAATCTTAGGAACCATTGGTACAATGACTCaattgtacatttctcataggactgcagtgattacttaaatagatcagtatttagtgattagcacatgacttgac----ccat------aataagtcctcctacaaatggtagctGTTATAGTTGTGGGAGATAATCATATATGCTGTTGAAAATGAT-C--TTTTTAACCTAGAT--ATGTCTTATACTCATGTAAATA--------------------GAAGGTGTTTTCAAAACTCATTAAGTTCTGCATTGAAATGATT-----------------------------ATAAATCAAAAGACAAATGAACTA--GGGGAACATGACAACATGGATGACAGATATCCAGTtaattttcttaatacataaagaatttctgtaaatcagtaataaaagcccaacaacccaatt--aaaaaaataggccaaggatgt--------cacacacacacacacacacacacacacacacaaatatcagtggcttttaaacgtacaaaaaga i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79756061 815 + 112192347 AATCCCCTGCCCTTTATCATATCAATGAATTATCATAGCTCTAATTTTATGCATGTTTGACTTTTTTGCATCTTA-AAAATTGCTTTCGTGCTCTACAAGTTTGGGGGCACTGTTCAGTGTGCACTCTAGTAGGGACTGGCTGAGAGCTGGCAGGAAAATCTAGGGAGTTATAAATAGGCTCTTCCTCAGAATGTATACA-AGGTATGAGGGGAGGGGAAGTGGGAACTCTGGGTGGAAA-GGGAAGAGAAAAGAGTGAAGAAATGCTGTGGTGAGGAGAGAAGCTGGATGGAAAAGTTGGGAATACACCAAAAACAAACTCCATATGGGTTAGTAATTGTATTTCAGACTAGCTTTAGGTTCAAATAAATCTTAGGAACCATTGGTACAATGACTCAATTGTGCATTTctcgtaggactgcagtgcttacttaaatagatgagtatttagtgattagcacatgacttgac----tcat------aataagtcctcctgcaaatggtagctGTTATAGTTGT-GGAGATAATCTTGTGTGCTGTTGAAAATAATCCTTTTTTTAACCTAGATACATGTCTCATACTCATGTAAATA--------------------GAAGGTGTTTTCAAACCTCATTAAGTTCTGCATTGAAATGATT-----------------------------ATAAATCAAAAGACAAATGAACTG--GGGGAACATGACAACATGAATGACAGATATCCAGTtaattttcttaatacataaagaatttctgtaaatcagtaataaaagcccaacgacccaatt--aaaaaaataggccaaggatgt----------------------cacacacacacacacacaaatatcagtggcttttaaacatacaaaaaga i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80836309 815 + 112612857 AATCCCCTGCCCTTTATCATATCAATGAATTATCATAGCTCTAATTTTATGCATGTTTGACTTTTTTGCATCTTA-AAAATTGCTTTCGTGCTCTACAAGTTTGGGGGCACTGTTCAGTGTGCACTCTAGTAGGGACTGGCTGAGAGCTGGCAGGAAAATCTAGGGAGTTATAAATAGGCTCTTCCTCAGAATGTATACA-aggtatgaggggaggggaagtgggaactctgggtggaaa-gggaagagaaaagagtgaagaAATGCTGTGGTGAGGAGAGAAGCTGGATGGAAAAGTTGGGAATACACCAAAAACAAACTCCATATGGGTTAGTAATTGTATTTCAGACTAGCTTTAGGTTCAAATAAATCTTAGGAACCATTGGTACAATGACTCAATTGTGCATTTctcgtaggactgcagtgcttacttaaatagatgagtatttagtgattagcacatgacttgac----tcat------aataagtcctcctgcaaatggtagctGTTATAGTTGT-GGAGATAATCTTGTGTGCTGTTGAAAATAATCCTTTTTTTAACCTAGATACATGTCTCATACTCATGTAAATA--------------------GAAGGTGTTTTCAAACCTCATTAAGTTCTGCATTGAAATGATT-----------------------------ATAAATCAAAAGACAAATGAACTG--GGGGAACATGACAACATGAATGACAGATATCCAGTtaattttcttaatacataaagaatttctgtaaatcagtaataaaagcccaacgacccaatt--aaaaaaataggccaaggatgt----------------------cacacacacacacacacaaatatcagtggcttttaaacatacaaaaaga i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76885401 830 + 107442819 AATCCCCTGCCCTTTATCATATCAATGAATTATCATAGCTCTAATTTTATGCATGTTTGACTTTTTTGCATCTTA-AAAATTGCTTTCGTGCTCTACAAGTTTGGGGGCGCTGTTCAGTGTGCATTCTAGTAGGGACTGGCTGAGAGCTGGCAGGAAAATCTAGGGAATTATAAATAGGCTCTTCCTCAGAATGTATACA-AGATATGAGGGGA-GAGAAGTGGGAACTCTGGgtggaaaggggaagagaaaacagtgaaGAAATGCTGTGGTGAGGAGAGAAGCTGGACAGAAAAGTTGGGAATACACCAAAAACAAACTCCATATGGGTTAGTAATTGTATTTCAGACTAGCTTTAGGTTCAAATAAATCTTAGGAACCATTGGTACAATGACTCAATtgtgcatttcttgtaggactgcAGTGCTTACTTAAATAGATGAGTATTTAGTGATTAGCACA-----TGAC----TCAT------AATAAGTCCTCCTGCAAATGGTAGCTGTTATAGTTGT-GGAGATAATCTTGTGTGCTGTTGAAAATAATCC--TTTTTAACCTAGATACATGTCTTATACTCATGTAAATA--------------------GAAGGTGTTTTCAAATCTCATTAAGTTCTGCattgaaatgatt-----------------------------ataaatcaaaagacaaatgaacTG--GGGGAACATGACAACATGAATGACAGATATCCAGTTAATTTTCTTAATACATAAAGAATTTCtgtaaatcagtaataaaagccCAAcgacccaatt--aaaaaaataggccaaggatgtcacacacacacacacacacacacacacacacacacacacaaatatcagtggcttttaaacatacaaaaaga i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81148793 818 + 108555830 AATCCCCTGACCTTTATCATATCAATGAATTATCATAGCTCTAATTTTATGCATGTTTGACTTTTTTGCATCTTA-AAAATTACTTTCGTGCTCTACAAGTTTTGGGGCGCTGTTCAGTGTGCACTCTAGTGGGGACTGGCTGAGAGCTGGCAGGAAAATCTAGGGAATTATAAATAGGCTCTTCCTCAGAATGTATACG-TGATATGAGGGGA-GGGAAGTGGGAACTCTGGGTGGAAAGGGGAAGAGAAAAGAGTGAAGAAATGCTGTGGTGAGGAGAGAAGCTGGATGGAAAAGTTGGGAATACACCAAAAACAAACTCCATATGGGTTAGTAATTGTATTTCAGACTAGCTTTAGGTTCAAATAAATCTTAGGAACCTTTGGTACAATGACTCAGTTGTGCATTTctcataggactgcagtgcttacttaaatagatgagtatttagtgattagcacatgacttgac----tcat------aataagtcctcctgcaaatggtagctGTTATAGTTGT-GGAGATAATCTTGTGTGCTGTTGAAAATAATCC-TTTTTTAACCTAGATACATGTCTTATACTCATCTAAATA--------------------GAAGGTGTTTTCAAACCTCCTTAAGTTCTGCATTGAAATGATT-----------------------------ATAAATCAAAAGACAAATGAACTG--GGGGAACATGACAACATGAATGACAGATATCCAGTtaattttcttaatgcataaagaatttctttaaatcagtaataaaagcccaacgacccaatt--aaaaaaataggccaaagatgt------------------cacacacacacacacacacacaaatatcagtggcttttaaacatacaaaaaga i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111378309 827 - 210400635 AATCCCCTGCACTT----ATATCAATAAATTATCATAGCTCTAATTTTATGCATATTTGAA-TTTTTGCATCTTA-AAAATTGCTTTTGTGCTCTGCAAGTTTGGGGGTGCTGTTCAGTGTGCACACTAGTAAGGAATAGCTGAGAGCTAGCAGGAAAATCTAGGGAATTATAAATAGGCTCTTCCTCAGAATGTATACA-AGCTATGAGAGAA-GGGGAGTGGGGACTCTGGGTAGAGAGGGGAAGAGAAAAGAGTGAGGAAATGCTGTGATGAGGAGAGAAGCTGGATGGAAAAGTTGCGAAGACACCATAGACAGACTCCACGTGGTTTAGTAATTTTATTTTAGGCTAGCTTTAGGTCCAAATAAATGTTAGAAACCATTGGCACAATGACCCAATTGTACATTTCTCATAGGACTGTGGTGACTATTTAAATAGATCAGTATTTCGTGATTAGCATGTGACTTGAT----CCAT------AGGAAGTCCTCTTGCAAATGGCAGCTGTTATAGTTGT-GGAGATAATCATGTGTGCTGTTGAAAATGATCC-TTTTTTAACCTAGAT--ATGTCTTATA------TAAATA--------------------GAAGGCGTTTTCAAAACTCAGTAAGTTCTGCATTGAAATGattaaataaatcaaattatataatttaattaaataaataaaaGGACAAATGAACTG--GAGAAACATGACAACATGCATGACAGATATCGAGTtaattttcttaatacataaaggatgtcggtaaatcagtaatgaaagcccaacaacccaatttaaaaaaaataggccaaggatgt----------------------cacacataaa-----aaaaaaatcagtggcttttaaacatgtaaaaata i calJac3.chr1 C 0 C 0 s mm10.chr19 38038180 771 - 61431566 AATCTCC------CCAACATATTAATTCATTCTAAGAGCCCAGATTTTATATGTATTTGGA-TCGCCACATTTTAGAAAAATATATTTGCATTCCAAAAGTCTGGATG-ACCGTTTGGTTTACATCCTAGTAGGGA-----------TTGGCAGGAGAATCCAGGAAATTAGGAATAGTCACTTTTCTGGAGTATGCACAGAAATGTGGGGAAG-ATGAGGTGGAG-----GAGAGATGAGGGGAGGAG--AAGACTGAAGAAGTGTGGTGTTGACTGAAG-----GGCTGGGGAAGGTGA--------CAAAGACAAGTTTCATGGGGTTGGGTCATT-TATTTCAGGAGACTGCTGGATCC---CAGATCTCAGGAGTTGCTATAACAGTGACTTCATTGTACCTTCCTCATAGTCCTGCTGGGCCAACTTCAACAAGATGGAA----ATGATTGTCATA-AACTTGATAATATCATAAACTCAAAAAGTCCTTCCACAAACAGTACATATTTTAGCTAC-CATGACAATCACTTGTCTT----------------TTCCTAACCTTGAT--GTGTCATAAGTTTGCTTAAATAttatttatttatttatttatttatttatttTCCAAACTC---AAGCTCTTCATTATAACAAC------------------------------ATTGATCTATGGACAAATGATGTGCTTGAGACCATCAAAATACCCATAA-AAATGTTGGATTAATTTCTTTAAT-----AGGGATTTCTGTAAAT-AACACTGAAGTACTTAATACCC-ACT--GGCAAAATAAGTCAAGAATAC----------------------CACACAATATGAAGACCAACTATTAGTGGCTTTTCTACCTGTAAAAAAA i mm10.chr19 C 0 I 1300 e canFam3.chr1 35275191 810 - 122678785 I e ponAbe2.chr9 64786273 0 + 135191526 C a score=246638.000000 s hg38.chr9_GL383541v1_alt 66074 112 + 171286 tgtcatctgggcatggtggctcacacctgtaatcccaacactttgagaggctgaggcagaaggatcacctgaggccaggagttcaagaccagccttggcaacacagtgagac s panTro4.chr9 68631743 112 + 137840987 tgtcatctgggcatggtggctcacacctgtaatcccaacactttgagaggctgaggcagaaggatcacctgaggccaggagttcaagaccagccttggcaacacagtgagac i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57823810 112 - 122973662 tgtcatctgggcatggtgtctcacacctgtaatcccaacactttgagaggctgaggcaggaggatcacctgaggccaggagttcaagaccagccttggcaacacagtgagac i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79756876 112 + 112192347 tgtcatctgggcatggtggctcacacctgtaatcccaacactttgagagactgaggcaggaggatcacctgagaccgggagttcaagaccagccttggcaacacagtgagac i rheMac3.chr15 C 0 I 4 s macFas5.chr15 80837124 112 + 112612857 tgtcatctgggcatggtggctcacacctgtaatcccaacactttgagagactgaggcaggaggatcacctgagaccgggagttcaagaccagctttggcaacacagtgagac i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76886231 112 + 107442819 tgtcatctgggcatggtggctcacacctgtaatcccaacactttgagagactgaggcaggaggatcacctgaggccgggagttcaagaccagctttggcaacacagtgagac i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81149611 112 + 108555830 tgtcatctgtgcatggtggctcacacctgtaatcccaacactttgagagactgaggcaggaggatcacctgaggccgggagttcaagaccagctttggcaacacagtgagac i chlSab2.chr12 C 0 I 4 s calJac3.chr1 111379136 81 - 210400635 tgtcagctgggcatggtggctcacacctgttaatccaacact-------------------------------agcagtagttgaagaccaacctgggcaacacagtgagac i calJac3.chr1 C 0 C 0 e mm10.chr19 38038951 1300 - 61431566 I e canFam3.chr1 35275191 810 - 122678785 I e ponAbe2.chr9 64786273 0 + 135191526 C a score=-832.000000 s hg38.chr9_GL383541v1_alt 66186 15 + 171286 aaaaagtttaaaatt s panTro4.chr9 68631855 15 + 137840987 aaaaagtttaaaatt i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57823922 15 - 122973662 aaaaagtttaaaatt i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80837236 4 + 112612857 ------ccta----- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76886343 4 + 107442819 ------ccta----- i papAnu2.chr15 C 0 C 0 s calJac3.chr1 111379217 4 - 210400635 ------ccca----- i calJac3.chr1 C 0 C 0 e mm10.chr19 38038951 1300 - 61431566 I e chlSab2.chr12 81149723 4 + 108555830 I e canFam3.chr1 35275191 810 - 122678785 I e ponAbe2.chr9 64786273 0 + 135191526 C e rheMac3.chr15 79756988 4 + 112192347 I a score=477233.000000 s hg38.chr9_GL383541v1_alt 66201 214 + 171286 tctctacaaaaagtttaaaaattggcctggtgtggtggctcatgcctgcagctacagctacttggaagg--ctaaggtgggaggattgcttgaacccaggagttcagggctgcagtgggtcatgatcacaccactgcaatccagcctgggtgacagagcaagactctgtctc-----aaaaaaaaaaaaaaaaaaa-------gttcaatttaactcatagtgagaga s panTro4.chr9 68631870 221 + 137840987 tctctacaaaaagtttaaaaattggcctggtgtggtggctcatgcctgcagctacagctacttggaagg--ctaaggtgggaggattgcttgaacccaggagttcagggctgcagtgggtcatgatcacaccactgcaatccagcctgggtgacagagcaagactctgtctc-----aaaaaaaaaaaaaaaaaaaaaaaaaagttcaatttaactcatagtgagaga i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57823937 214 - 122973662 tgtctataagaagtttaaaaattggcttggtgtggtggctcgtgcctgcagctccagctacttggaagc--ctaaggtgggaggatcacttgaacccaggagttcagggctgcaatgagtcatgatcacaccactgcaatccagcctgggtgacagagcaagactctgtctc-----caaaaaaaaaaaaaaaaaa-------gttcaacttaactcatagtgagaga i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79756992 214 + 112192347 tctctacaaaaaatttaaaaattgacctggtgtggtggctcacgcctgcagctccagctacttggaagctactgaggtgggaggatcacttgaacccaggagttcacggctgcagtgactcatgattacaccactgcaatccagcctgggtgacagagcaagactctgtctc-------aaaaaaaaaaaaaaaaa-------gttcaacttaactcataatgagaga i rheMac3.chr15 I 4 C 0 s macFas5.chr15 80837240 220 + 112612857 tctctacaaaaaatttaaaaattgacctggtgtggtggctcacgcctgcagctccagctacttggaagctactgaggtgggaggatcacttgaacccaggagttcacggctgcagtgactcatgattacaccactgcaatccagcctgggtgacagagcaagactctgtctc-aaaaaaaaaaaaaaaaaaaaaaa-------gttcaacttaactcataatgagaga i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76886347 212 + 107442819 tctctacaaaaaatttaaaaattgacctggtgtggtggctcatgcctgcagctccagctacttggaagctactgaggtgggaggatcacttgaacccaggagttcacgGCTGCAGTGActcatgattacaccactgcaatccagcctgggtgacagagcaagactctgtctc---------aaaaaaaaaaaaaaa-------gttcaacttaACTCATAATGAGAGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81149727 221 + 108555830 tctctacaaaaaatttaaaaattgacctggtgtggtggctcatgcctgcagctccagctacttggaagctactgaggtgggaggatcacttgaacccaggagttcatggctgcagtgactcatgattacaccactgcaatccagcctgggtgacagagcaagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaa-------gttcaacttaactcataatgagaga i chlSab2.chr12 I 4 C 0 s calJac3.chr1 111379221 212 - 210400635 tctgtagacaaagttaaaaaattggccaggtgtggtggttcatgcctacagcttcagctacttggaaag--ctgtggttggaggatcgcttgaacccagaaattcagggctgccatgagccatgatcacatcactgcactccagcctgggcaacagagcaagactctgtctc-------aaaaaaaaaaaaaaaat-------gttcatcttaactcacagtgagaga i calJac3.chr1 C 0 C 0 e mm10.chr19 38038951 1300 - 61431566 I e canFam3.chr1 35275191 810 - 122678785 I e ponAbe2.chr9 64786273 0 + 135191526 C a score=1787979.000000 s hg38.chr9_GL383541v1_alt 66415 615 + 171286 aaccc-aaattacaatggcactgggataccatttttt-atctatcaaattgtttaaatatcaaaaagtttagtaacatacactgtatttatgatgatggggaaagtgctctaatacattgtttctaccaacataaattggcacaacttcaggaatgaaagtgtgggaacatttagccaaagtataaatggcacatttcctttaactcagcagttccctttcgagggtcttcttccatggttatactcagaaatccgtacttagtcctaaatacaagaagatttatcaccacattgcttttaatagcttaagattggaaaattatgcatcacaagggcaccaattaattaaattatggtacatttatacaatggaaagctatgctatgtggcagttaaagatatgaggaagctttagatagagaaacagatagataatataaccatctccaagatatattcagtgaagaacagcatggcacagaatcgcatatagtatgttaactgtttgtagaaaaattaaaaggctatatctaaagatatgtttgtgtgtgtttatacatgaataaagtatctctggaagggtgtcccagaaactgAGGGTAAGAGGAAGGCTTGG s panTro4.chr9 68632091 614 + 137840987 aaccc-aaattacaatggcactgggataccatttttt-atctatcaaattgtttaaatatcaaaaagtttagtaacatacactgtatttatgatgatggggaaagtgctctaatacattgttgctaccaacataaattggcacaacttcaggaatgaaagtgtggcaacatttagccaaagtataaatggca-atttcctttaactcagcagttccctttcgagggtcttcttccatggttatactcagaaatccgtacttagtcctaaatacaagaagatttatcaccacattgcttttaatagcttaagattggaaaattatgcatcacaagggcaacaattaattaaattatggtacatttatacaatggaaagctatgctatgtggcagttaaagatatgaggaagctttagatagagaaacagatagataatataaccatctccaagatatattcagtgaagaacagcatggcacagaatcgcatatagtatgttaactgtttgtagaaaaattaaaaggctatatctaaagatatgtttgtgtgtgtttatacatgaataaagtatctctggaagggtgtcccagaaactgAGGGTAAGAGGAAGGCTTGG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64786273 615 + 135191526 AACCc-aaattacagtggcactgggataccatttttt-atctatcaaattgtttaaatatcaaaaagtttagtaacatacactgtatttatgatgatggggaaaatgtcctaatacattgttgctaccaatataaattggcacaacttcaggaatgaaagtgtggcaacatttaaccaaagtataaatggcacatttcctttaactcagcagttccctttcgagggtcttattccatggttatactccgaaatccgtacttagtcctaaatacaagaagatttatcaccacattgcttttaatagctaaagattggaaaattattcatcacaagggcaccaattaattaaattatggtacatttgtacaatggaaagctatgctatgcagcagttaaagatatgaggaagctttagatagagaaacagatagataatataaccatctccaagatatattcagtgaagaacagcatggcacagaatggcatatagtatgttaactgcttgtagaaaaattaaaaggctatatctaaagatatgtttgtgtgtgtttacatatgaataaagtatctctggaagggtgtcccagaaactgaGGGTAAGAGGAAGGCTTGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57824151 614 - 122973662 aactc-gaattacaatggcactaggataccatttttt-atccatctaattgtttaaatatc-aaaagcttagtaacatacactgtatttatgatgatggggaaaatgctctaatgcgttgttgctaccaacgtaaattggcacaacttgaggaatgaaagtgtggcaatatttaaccaaaatataaatggcacaattcctttaactcagcagttccctttcgagggtcttcttccatggttatactcagaaatccgtacttagtcctaaatacaagaagacttatcaccacatttcttttaatagctaaagactgggaaattattcatcacaaaggcaccaattaattaaattatggtacatttatacaatggaaagctatgcaatgcagcagttaaagatatgaggaagctttagatagagaaacagatagataatataaccatctccaagatatattcagtgaagaacagcatggcacagaatggcatatagtatgttaattgtttgtagaaaaattaaaaggctatatctaaagatatgtttgtgtgtgtttatatatgaataaagtatctctggaagggtgtcccagaaactgAGGGTAAGAGGAAGGCTTGG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79757206 604 + 112192347 aactc-aaattacaatggcagtgggataccatttttt-atctatcaaattgtttaaatatcaaaaagtttagtaacatacgctgtatttatgatgatgggaaaaatgctctaatacattgt--ctaccaacataaattggcacaactttaggaatgaaagtgtagcaatatttaaccaaaatataaat-gcatatttcccttaactcagcagttccctttcaagggtcttcttccacggctatactcagaaatccacacttagtcttaaatacaagaagatttatcaccacattgcttttaatagctaaagattggaaaattattcatcacaagggcaccaattaattaaattatggtacatttatacaatggaaagctatgctatgcagcagttaaagacatgaggaagctt----tagagaaacagatagataatataaccatctccaagatatattcagtgaagaaaagcatggcacagaatgatatatagtatgttaactgtttgtagaaaaattaaaaggctatatctaaagatatgtt----tgtgtttgtatatgaataaagtatctctggaagggtgtcccagaaactgAGGGTAAGAGGGAGGCTTGG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80837460 604 + 112612857 aactc-aaattacaatggcagtgggataccatttttt-atctatcaaattgtttaaatatcaaaaagtttagtaacatacgctgtatttatgatgatgggaaaaatgctctaatacattgt--ctaccaacataaattggcacaactttaggaatgaaagtgtagcaatatttaaccaaaatataaat-gcatatttcccttaactcagcagttccctttcaagggtcttcttccacggctatactcagaaatccacacttagtcttaaatacaagaagatttatcaccacattgcttttaatagctaaagattggaaaattattcatcacaagggcaccaattaattaaattatggtacatttatacaatggaaagctatgctatgcagcagttaaagacatgaggaagctt----tagagaaacagatagataatataaccatctccaagatatattcagtgaagaaaagcatggcacagaatgatatatagtatgttaactgtttgtagaaaaattaaaaggctatatctaaagatatgtt----tgtgtttgtatatgaataaagtatctctggaagggtgtcccagaaactgAGGGTAAGAGGGAGGCTTGG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76886559 604 + 107442819 AACTC-AAATTACAATGGCAGTGGGATACTATTTTTT-ATCTATCAAATTGTTTAAATATCAAAAAGTTTAGTAACATACGCTGTATTTATGATGATGGGGAAAATGCTCTAATACATTGT--CTACCAACATAAATTGGCACAACTTCAGGAATGAAAGTGTAGCAATATTTAAccaaaatataaat-gcatatttcCCTTAACTCAGCAGTTCCCTTTCAAGGGTCTTCTTCCATGGCTATACTCAGAAATCCACACTTAGTCTTAAATACAAGAAGATTTATCACCACATTGCTTTTAATAGCTAAAGATTGGAAAATTATTCATCACAAGGGCACCAATTAAttaaattatggtacatttaTACAATGGAAAGCTATGCTATGCAGCAGTTAAAGATATGAGGAAGCTT----TAGAGAAACAGATAGATAATATAACCATCTCCAAGATATATTCAGTGAAGAAAAGCATGGCACAGAATGATATATAGTATGTTAACTGtttgtagaaaaattaaaaggctaTATCTAAAGATATGTT----TGTGTTTGTATATGAATAAAGTATCTCTGGAAGGGTGTCCCAGAAACTGAGGGTAAGAGGGAGGCTTGG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81149948 604 + 108555830 aactc-aaattacaatggcagtgggataccatttttt-atctatcaaattgtttaaatatcaaaaagtttagtaacatatgctgtatttatgatgatggggaaaatgctctaatacattgt--ctaccaacataaattggcacaacttcaggaatgaaagtgtagcaatatttaatcaaaatataaat-gcatatttcccttaactcagcagttccctttcaagggtcttcttccatggctatactcagaaatccacacttagtcttaaatacaagaagatttatcaccacattgcttttaatagctaaagattggaaaattattcatcacaagggcaccaattaattaaattatggtacatttatacaatggaaagctatgctatgcagcagttaaagatatgaggaagctt----tagagaaacagatagataatataaccatctccaagatatattcagtgaagaaaagcatggcacagaatgatatatagtatgttaactgtttgtagaaaaattaaaaggctatatctaaagatatgtt----tgtgtttgtatatgaataaagtatctctggaagggtgtcccagaaactgAGGGTAAGAGGGAGGCTTGG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111379433 596 - 210400635 aactcaaaattacaatggcagtgagataccattttttaatctatcaaattgttcgaatataaaaaagtttagtagcatatactata---atgaggatggggagaatgagctaatacattgttgctagcaacataaattggcacagcttcaagaaggaaaatgtggcaatatttaaccaaagtat-aat-gcacatttcctttacctcagcagttccctttcgagggtcttcttccatggcagtactcagaaatctgtacttagtccta---actagaagatttatcgccacct---ttttaatagctaacgattagaaaaatattcatcatgagggcacc----aattaaattatagtacattcatacaatggaaagctatgctattcagcagttaa------gaggaagctttagctagagcaacaggtagataatataaccatctccaagatatattcagtgaagaaaagcatggcacagaatggtatatagtatgttaatcatttgtagaaaaattagaaggctatatctaaagatatgtttttgtgcatttatatatgaataaagtattcctggcaggatatcccagaaacGGAGGGTAAAAGGGAGGCTTCC i calJac3.chr1 C 0 C 0 e mm10.chr19 38038951 1300 - 61431566 I e canFam3.chr1 35275191 810 - 122678785 I a score=972541.000000 s hg38.chr9_GL383541v1_alt 67030 305 + 171286 CTTCAGTTTCTTATATCTTTGAATTATGTATCATTCTGTATTACTTACTAAAAATAAAC------------CCCACAGAGTCCACATGGAGA-GTTGGCCCTGGAACACTGAGAGACATCATTTGTGTGG-TTTTTGCCACCCTCTTTTCTTGCTCGGCTCAGCC--CACTGCTATGCTGGAGTAGGTCACAGGCCAAGAGCTGGACATGTGCAAAGCCTTCAGGAAGACCTAATCTCAGAGTCAGGGAGAGAAGGCAGGAGCCACAGTGTAGCCCATTTAATCCAAGAGGGTCCACCATGACTTTCGAATCTAAAATACT s panTro4.chr9 68632705 305 + 137840987 CTTCAGTTTCTTGTATCTTTGAATTATGTATCATTCTGTATTACTTACTAAAAATAAAC------------CCCACAGAGTCCACATGGAGA-GTTGGCCCTGGAACACTGAGAGACATCATTTGTGTGG-TTTTTGCCACCCTCTTTTCTTGCTCGGCTCAGCC--CACTGCTATGCTGGAGTAGGTCACAGGCCAAGAGCTGGACATGTGCAAAGCCTTCAGGAAGACCTAATCTCAGAGTCAGGGAGAGAAGGCAGGAGCCACAGTGCAGCCCATTTAATCCAAGAGGGTCCACCATGACTTTTGAATCTAAAATACT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64786888 305 + 135191526 CTTCAGTTTCTTGTATCTTTGAATTATGTATCATTCTGTATTACTTACTAAAAATAAAC------------CCTACTGAGTCCACATGGAGA-GTTGGCCCTGGAACACTGAGAGACATCATTTGTGTGT-TTTTTGCCACCCTCTTTTCTTGCTCAGCTCAGCC--CACTGCTGTGCTGGAGTAAGTCACAGGCCAAGAGCTGGACACGTGCAAAGCCTTCAGGAAGGCCTAATCTCAGAGTCAGGGAGAGAAGGCAGGAGCCACAGTGCAGCCCGTTTGATCCAAGAGGGTCCACCATGACTTTCGAATCTAAAATACT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57824765 305 - 122973662 CTTCAGTTTCTTGTATCTTTGAATTATGTATCATTCTGTATTACTTACTAAAAATAAAA------------CCCACAGAGTCCACATGGAGA-GTTGGCCCTGGAACACTGAAAGACATAATTTGTGTGG-TTTTTGCCACCCTCTTTTCTTGCTCGGCTCAGCC--CACTGCTGTGCTGGAGTAAGTCACAGGCCAAGAGCTGGACATGTGCAAAGCCTTCAGGAAGGCCTAATCTCAGAGTCAGGGAGAGCAGGCAGGAGCCACAGTGCAGCCCATTTAATCCAAGAGGGTCCACCATGACTTTCGAATCTAAAATACT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79757810 308 + 112192347 CTTCAGTTTCTTATATCTTTGAATTATGTATCATTCTGTATTACTTACTAAAAATAAAAAAAAG-------CCCACAGAGTCCACATGGAGA-GTTGGCCCTGGAACACTGAGAGACATCATTTGTGTGG-TTTTTGCCACCCTCTTTTCTCGCTTGGCTCAGCC--CACTGCTGTGCTGGAGTAAGTCACAGGCCAAGAGCTGGACATGTGC-AAGCCTTCAGGAAGGCCTAATCTCAGAGTCA-GGAGAGAAGGCAGGAGCCACAGTGCAGCCCATTTAATCCAAGAGGGTCCACCGTGACTTTCGAATCTAAAATACT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80838064 308 + 112612857 CTTCAGTTTCTTATATCTTTGAATTATGTATCATTCTGTATTACTTACTAAAAATAAAAAAAAA-------CCCACAGAGTCCACATGGAGA-GTTGGCCCCGGAACACTGAGAGACATCATTTGTGTGG-TTTTTGCCACCCTCTTTTCTCGCTTGGCTCAGCC--CACTGCTGTGCTGGAGTAAGTCACAGGCCAAGAGCTGGACATGTGC-AAGCCTTCAGGAAGGCCTAATCTCAGAGTCA-GGAGAGAAGGCAGGAGCCACAGTGCAGCCCATTTAATCCAAGAGGGTCCACCGTGACTTTCGAATCTAAAATACT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76887163 311 + 107442819 CTTCAGTTTCTTATATCTTTGAATTATGTATCATTCTGTATtacttactaaaaataaaaaaaaa------ccccgCAGAGTCCACATGGAGA-GTTGGCCCTGGAACACTGAGAGACATCATTTGTGTGG-TTTTTGCCACCCTCTTTTCTCGCTTGGCTCAGCCCACACTGCTGTGCTGGAGTAAGTCACAGGCCAAGAGCTGGACATGTGC-AAGCCTTCAGGAAGGCCTAATCTCAGAGTCA-GGAGAGAAGGCAGAAGCCACAGTGCAGCCCATTTAATCCAAGAGGGTCCACCGTGACTTTCGAATCTAAAATGct i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81150552 309 + 108555830 CTTCAGTTTCTTATATCTTTGAATTATGTATCGTTCTGTATTACTTACTAAAAATAAAAAAAAA------ACCCACAGAGTCCACATGGAGA-GTTGGCCCTGGAACACTGAGAGACATCATTTGTGTGG-TTTTTGCCACCCTCTTTTCTCGCTTGGCTCAGCC--CACTGCTGTGCTGGAGTAAGTCACAGGCCAAGAGCTGGACATGTGC-AAGCCTTCAGGAAGGCCTAATCTCAGAGTCA-CGAGTGAAGGCAGGAGCCACAGTGCAGCCCATTTAATCCAAGAGGGTCCACCGTGACTTTCGAATCTAAAATGCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111380029 311 - 210400635 CTTTAGTTTTTTATATCTTTGAATTATGTATCATTCTGTGTTACttaataaaaattaaaaaaaa----aaaaaCACTGAGTCCACATGGAGA-GTTGGCCCTGGAACACT-CTCCACAGCATTTATGTGGTTTTTTGCCACCCACTTTTCTCCCTTGGCTCAGCC--CACTGCTGTGCTGGAGTAAGTCACAGGCCCAGAGCTGGACACATGCAAAGCCTTAAGAAAAACCTAATCTCAGAGTCC-ACAGAGAAAACAGGAGCCACAG-GCAGCCCATTTAATTTAAGAGGGTCCACCATGACTTTTGAATCTAAAATACT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35276001 311 - 122678785 cttCACTTTCTTAT---TTTCAATGATTTAATGTTCTGTATTCAAAACTAATAATAATAACGCATTTTTAACAAGTCGAGTCCACACGGAGAGGGGGGTCCTGGAGCCCTGAGAGATATCACTCATGTCT-CCTTTCACCACCCCTCTCCTGACTCAGTTCGAAC--CACTGCTGTGCCAGAGAACGGTGCACATCCACAGGCTAGCATGTGCAGAACCTTCTGAATGACCTCATCACAGAGGTT-AGAAAGGAGA-AGGGACCACCTTTCAGCCC--TTTATCTTGGATGGTCCACAGTGATCCTTAAATCAGTTCATCT i canFam3.chr1 I 810 C 0 e mm10.chr19 38038951 1300 - 61431566 I a score=2860156.000000 s hg38.chr9_GL383541v1_alt 67335 811 + 171286 CTTTTCACAG-ATAA-AGAACTGGCCTGGAACCTGAGGTtgc------------aggatgccctgttacatttgaatttcaaataaaaatca--------------aataatttttttagtataagtatgtccccagtgatatttggaacatatttaCGAATTTTTAATTGCTTAATTTGGCAATCCGAATCGGATCCGGAATCTGGC-TGCTTGTTAGGCAGCAGATActctctgagccagaccttcctgatttaggaaatgaaggatgataactgtccaattgtatcatggggttgctatgaggcttaattatgccccagtgctttgtgaatagttaagtgctctaAATTGGTCAGGAATGAACACAGTTGCTATCAGTGTTATTGTCAT-CAAAACCCTAGTCTCCATGGCAACCAACTTATTGAAACCTACTGCCTTG-TTTTCTCCCAACTTTACTGTGATTTATTTCTCATAAGCCTTAGGCACATAGTCATACATTTATCTTTCTTACTTAAGGAAG--------ATTTCCAAA-------------TA---------ACGGGGACTTCATTTTCAGTGTTTATTGTTCTTGGACTTAAATTTATTGCCTTAATTTTAAAATATCTTTACCTTAGGTAAATGACTGGCAGGGTAGACTGCttaattcatttggcatgtatttatttaacacctattatgttacttggcattaaaggtaaagcgctgagtaaaatagacaaaaa-cctgccatcaatgaatatatggtctggctggagTCCAGCTGTGTTAGAATAGAAGGAGGAG-AGTAAGCAGATAAGAAGagtgcttatcaaatctggcttgactattagaatcacctggggag s panTro4.chr9 68633010 811 + 137840987 CTTTTCACAG-ATAA-AGAACTGGCCTGGAACCTGAGGTtgc------------aggatgccctattacatttgaatttcaaataaaaatca--------------aataatttttttagtgtaagtatgtccctagtgatatttggaacatatttgtGTATTTTTAATTGCTTAATTTGGCAATCCGAGTGGGATTCGGAATCTGGC-TGCTTGTTAGGCAGCAGATActctctgagccagaccttcctgatttaggaaatgaaggatgataactgtccaattgtatcatggggttgctatgaggcttaattatgccccagtgctttgtgaatagataagtgctctaAATTGGTCAGGAATGAACACAGTTGCTATCAGTGTTATTGTCAT-CAAAACCCTAGTCTCCATGGCAACCAACTTATTGAAACCTACTGCCTTG-TTTTCTCCCAACTTTACTGTGATTTATTTCTCATAAGCCTTAGGCACATAGTCATACATTTATCTTTCTTACTTAAGGAAG--------ATTTCCAAA-------------TA---------ATGGGGACTTCATTTTCAGTGTTTATTGTTCTTGGACTTAAATTTATTGCCTTTATTTTAAAATATCTTTACCTTAGGTAAATGACTGGCAGGGTAGACTGCttaattaatttggcatgtatttatttaacacctattatgctacttggcattaaaggtaaagcgctgagtaaaatagacaaaaa-cctgccatcaacgaatgtatggtctggctgaagTCCAGCTGTGTTAGAATAGAAGGAGGAG-AGTAAGCAGATAAGAAGagtgcttatcaaatctggcttgactattagaatcacctggggag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64787193 811 + 135191526 CTTTTCACAG-AAAA-AGAACTGGCCTGGAACCTGAGGTtgc------------aggatgccctattacatttgaatttcaaataaaaatca--------------aataatttttttagtataagtatgtccccagtgatttttggaacatatttaCGTATTTTTAATTGCTTAATTTGGCAATCCGAGTGGGATCCCGAATCTGGC-TGCTTGTTAGGCAGCAGATActctctgagccagaccttcctgatttaggaaatgaaggatgataactgtccaattgtatcatggggttgctatgaggcttaattatgccccagtgctttgtgaatagttaagtgctctaAATTGGTCAGGAATGAACACAGTTGCTATCAGTGTTATTGTCAT-CAAAACCCTAGTCTCCATGGCAACCAACTTATTGAAACCTACTGCCTTG-TTTTCTCCCAACTTTACTGTGATTTATTTCTCATAAGCCTTAGGCACATAGTCATACATTTATCTTTCTTACTTAAGGAAG--------ATTTCCAAA-------------TA---------ATGGGGACTTCATTTTCAGTGTTTATTGTTCTTGGACTTAAATTTATTGCCTTTATTTTAAAATATCTTTACCTTAGGTAGATGACTGGCAGGGTAGACTGCttaattcatttggcatgtatttatttaacacctattacgttacttggcattaaaggtaaagagctgagtaaaatagataaaaa-cctgccatcaatgaatgtatggtctggctgaagTCCAGCTGTGTTAGAATAGAAGGAGGAG-AGTAAGCAGATAAGAAGagtgcttctcaaatctggcttgactgttagaatcacctggggag i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57825070 789 - 122973662 CTTTTCACAG-AAAA-AGAACTGGCCTGGAACCTGAGGTtgc------------aggatgccctattacatttgaatttcaaataaaaatca--------------aataatttttttagtataagtatgtccccagtgatatttggaacatatttaCGTATTTTTAATTGCTTAATTTGGCAATCTGAGTGGGATCCAGAATCTGGC-TGCTTGTTAGGCGGCAGATActctctgagccagaccttcctgatttaggaaatgaaggatgataactctccaactgtatcatggggttgctatgaggcttaattatgccccagtgctttgtgaatagttaagtgctctaaattggtcaggaattaACACAGTTGCTATCAGTGTTATTGTCAT-CAAAACCCTAGTCTCCATGGCAACCAACTTATTGAAGCCTACTGCCTTA-TTTTCTCCCAACTTTACTGTG----ATTTCTTGTAAGCCTTAGGCACATAGTCATACATTTATC--------------------------TTTCCAAA-------------TA---------ACGGGGACTTCATTTTCAGTGTTTACTGTTCTTGGACTTAAATTTATTGCCTTTATTTTAAAATATCTTTACCTTAGGTAAATGACTGGCAGGGTAGACTCCttaattcatttggcatgtatttatttaacacctattatgttacttggcattaaaggtaaagagctgagtaaaatagacaaaaa-cctgccattaatgaatgtatggtctggctgaggTCCAGCTGTGTTAGAATAGAAGGAGGAG-AGTAAGCAGATAAGAAGagtgcctctcaaatctggcttgactattagaatcacctggggag i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79758118 813 + 112192347 CTTTTCACAG-AAAA-AAAACTGGCCTGGAACCTGAGGTtac------------aggatgcctttttacatttgaatttaagataaaaatca--------------aataattttttcagtataagtatgtccccagtgatatttggaacatatttaCGTATTTTTAATTGCTTAATTTGGCAATCCAAGTGGGATCCGGAATCTGGC-TGCTCGTTAGGCAGCAGATActctctgagccaggccttcctgatttgggaaatgaaggatgataactgtccaactgtatcatggggttgctctgaggcttaattatgccccagtgctttgtgaatagttaagtgctctaAATTGGTCAGGAATGAACACAGTTGCTATCAGTGTTATTGCCAT-CAAAACCCTAGTCTCCATGGCAACCAACTTACTGAAACCTACTGTCTTG-TTTTCTCCCAACTTTACTGTGATTTATTTCTCATAAGCCTTAGGCACATAGTCATACATTTATCTTTCTAATTTAAGGAGG--------ATTTCTAAAATA-------TATTA---------ACGGGGACTTCATTTTCAGTGTTTATTGTTCTTGGACTCAAATTTATTGCCTTTATTTTGAAACATCTTTACCTCAGGTAAATGACTGGCAGTGTAGACTGCTTAGTTCATTTGGcatg----tatttaacacctattaagttaaccagcattaaaggtaaagagctgagtaaaatagacacaaa-cctgccatcactgaatgtatggtctggctgaggTCCAGCTGTGTTAGAACAGGAGGAGGAG-AGTAAGCAGATAAGAAGagtgcttctcaaacctggcttgactattagaatcacctggggag i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80838372 814 + 112612857 CTTTTCACAGAAAAA-AAAACTGGCCTGGAACCTGAGGTtgc------------aggatgcctttttacatttgaatttaagataaaaatca--------------aataattttttcagtataagtatgtccccagtgatatttggaacatatttaCGTATTTTTAATTGCTTAATTTGGCAATCCAAGTGGGATCCGGAATCTGGC-TGCTCGTTAGGCAGCAGATActctctgagccaggccttcctgatttgggaaatgaaggatgataactgtccaactgtatcatggggttgctctgaggcttaattatgccccagtgctttgtgaatagttaagtgctctaAATTGGTCAGGAATGAACACAGTTGCTATCAGTGTTATTGCCAT-CAAAACCCTAGTCTCCATGGCAACCAACTTACTGAAACCTACTGTCTTG-TTTTCTCCCAACTTTACTGTGATTTATTTCTCATAAGCCTTAGGCACATAGTCATACATTTATCTTTCTAATTTAAGGAGG--------ATTTCTAAAATA-------TATTA---------ACGGGGACTTCATTTTCAGTGTTTATTGTTCTTGGACTCAAATTTATTGCCTTTATTTTGAAACATCTTTACCTCAGGTAAATGACTGGCAGTGTGGACTGCTTAATTCATTTGGCATG----TATTTAACACCTATTAAGTTAACCAGCATTAAAGGTAAAGAGCTGAGTAAAATAGACACAAA-CCTGCCATCACTGAATGTATGGTCTGGCTGAGGTCCAGCTGTGTTAGAACAGGAGGAGGAG-AGTAAGCAGATAAGAAGagtgcttctcaaacctggcttgactattagaatcacctggggag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76887474 809 + 107442819 cttttcacag-aaaa-aaaactgGCCTGGAACCTCAGGTTGC------------AGGATGCctttttacatttgaatttaagataaaaatca--------------aataattttttcagtataagtatgtccccagtgatatttggaacataTTTACGTATTTTTAATTGCTTAATTTGGCAATCCAAGTGGGATCCGGAATCTGGC-TGCTCGTTAGGCAGCAGATACTCTCTGAGCCAGGCCTTCCTGATTTGGGAAATGAAGGATGATAACTGTCCAACTGTATCATGGGGTTGCTCTGAGGCTTAATTATGCCCCAGTGCTTTGTGAATAGTTAAGTGCTCTAAATTGGTCAGGAATGAACACAGTTGCTATCAGTGTTATTGCCAT-CAAAACCCTAGTCTCCATGGCAACCAACTTACTGAAACCTACTGTCTTG-TTTTCTCCCAACTTCACTGTGATTTATTTCTCATAAGCCTTAGGCACATAGTCatacatttctctttc----ttaaggagg--------atttctaaaata-------tatta---------acgGGGACTTCATTTTCAGTGTTTATTGTTCTTGGACTCAAATTTATTGCCTTTGTTTTGAAACATCTTTACCTCCAGTAAATGACTGGCAGTGTAGACTGCTTAATTCATTTGGCATG----TATTTAACACCTATTAAGTTAACCAGCATTAAAGGTAAAGAGCTGAGTAAAATAGACACAAA-CCTGCCATCACTGAATGTATGGTCTGGCTGAGGTCCAGCTGTGTTAGAACAGGAGGAGGAG-AGTAAGCAGATAAGAAGAGTGCTTCTCAAACCTGGCTTGactattagaatcacctggggag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81150861 813 + 108555830 CTTTTCACAG-AAAA-AACACTGGCCTGGAACCTCAGGTTGc------------aggatgcctttttacatttgaatttaagataaaaatca--------------aataatttttttagtataagtatgtccccagtgatatttggaacatatttaCGTATTTTTAATTGCTTAATTTGGCAATCCGAGTGGGATCCGGAATCTGGC-TGCTCGTTAGGCAGCAGATActctctgagccaggccttcctgatttgggaaatgaaggatgataactgtccaactgtatcatggggttgctctgaggcttaattatgccccagtgctttgtgaatagttaagtgctctaAATTGGTCAGGAATGAACACAGTTGCTATCAATGTTATTGCCAT-CAAAACCCTAGTCTCCATGGCAACCAACTTACTGAAACCTACTGCCTTG-TTTTCTCCCAACTTTACTGTGATTTATTTCTCATAAGCCTTAGGCACATAGTCATACATTTATCTTTCTTAGTTAAGGAGG--------ATTTCTAAAATA-------TATTA---------ACGGGGACTTCATTTTCAGTGTTTATTGTTCTTGGACTCAAATTTATTGCCTTTATTTTGAAACATCTTTACCTCAGGTAAATGACTGGCAGTGTAGACTGCTTAATTCATTTGGCATG----TATTTAACACCTATTAAGTTAACCAGCATTAAAGGTAAAGAGCTGAGTAAAACAGACACAAA-CCTGCCATCGCTGAATGTATGGTCTGGCTGAGGTCCAGCTGTGTTAGAACAGAAGGAGGAG-AGTAAGCAGATAAGAAGagtgcttctcaaacctggcttgactattagaatcacctggggag i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111380340 792 - 210400635 GTTTTCACAG-AAAA-AGATCTGGCCTGGAACCTGAGGTtac------------aggatgcccaattacatttgaatctcaggtaaaaatga--------------agtaa------------aagtatgtccctggtgatatttggaacatatttaCATATTTTTAATTGCTTAATTTGGCAATCCGAGTGGGATTCGGAATctggc-tgcttgttaggcagcaaatactctctaagctaggctctcctgatttgggaaatgaagaatgataactgtccagccgtatcatggggttgctacaaggcttaattatg-tccagtgctttgtgaatagttaagtgctctaaaatgGTCAGGAATGAACACAGTTGCTATCAGCGATGCTGTCAT-CAAAACCCTAGTCTCCATGGCAACCAACTTATTAAAACCCACTGCCTTG-TTTTCTCCCAACTTTACTGTGATTTATTTCTTTTAAGCCTTAGTTATGTAGTCATACAGTTATCTTTCTTATTTAAGGAAG--------ATTTCTAAAATA-------TATTA--------------GATCTCATTTTCAGTATTTATTGTTCTTGGACTTAAATTTATTGCCTTTATTTTAAAACATCTTTACCTTAGTTAAGTGACTAGCATG-------CCttaattcatttggcatgtatttatttaacacctattatgttacccagcattacaggtaaagagctgagtaaaatagacacaaa-cctgccatcactgaatgtatcatctggctgagATCCAGCTTTGTTAAAATAGGAGGAGGAG-AATAAGCAGATAAGAAGagtacttttcaaacctggcttgactattagaatcacctggggag i calJac3.chr1 C 0 C 0 s mm10.chr19 38040251 723 - 61431566 CTATTCAAAA-AAAAGAAAATCAGCCTAGGACCAAGGGTtgc------------agggcaccctgttaaatcagaattacagataagtaaca-----------------aagtctcttaaggtcagtgtgtgccatgcaatatttagaatgtgcATCAGTAGTTCCAACTGCTCTATCTGGCCATCTGAGT-GAATCTGGAGCCCACTGTGCTCATTAGGCAGAATACAGAATCCAAGCCAGGCTTCTGCACTCCATCAAATGAGAAACAA-AAGTGTCCAGCTTTTTCGCGGGGTCGATGAGAGGCTCAAGCTGGCTCCAGTGATTTATAAATAGTTAAGT-CTCTAAAACTG------AGTAACA-AGTTGCTGTCAG-GGTGTTGGTAT-CAAAATTCAAGCC-------------ATTTACTGGAACA--------TG-ATTTCTTCCCCTTCTGTTTTG----GTTTCTTAGACGCCTTGGATACGTA--CGTGCCCTCATATTTCTCTTCAAAAGAGGCAAGCAGTGCTTCCGAAATAGGGAACGTACTATATAAAACGGCAAGAATTTCCTTCTCGTTGTCCGTC-CTCCTGCACTGAGATGTG----------------------------------------TAGAAGGGTCCACTGCTTAGTTAact-----------tattaaacacttactgtg-tgccacaccttgaggctagaga--tggatagaacaAATAC-GG-TTGGCCATACATGAATGTGTGGTGTGCTTAA--TCTAACTG----------------GGAA-AGCAAACAGTTAAAAAGAACACTTCTCCAG-CTGCC---ACT-TCAGAATCACTTAGAAGT i mm10.chr19 I 1300 C 0 s canFam3.chr1 35276312 836 - 122678785 CTTTTCACAG-AAGA-AGAACTGGCCTGGAGCCtagggttgccaggtaaaatagaggaagccacattccatttgaatttcaaatagatgacattttttttttttttttttttttttttagtataagtatgtcccatgcagtattgggggcatacttaagtactTTGGATTGCTGAATCTGGCTATCCAAGTGGGATCCAGAACCCAGC-TGCTCCTCAGGCAGCATGTcttctctgagcttggctttcctaatctgtgagataaaggataacaagtctccagctatatcatgaggttactgtgagTCCGAAAAAGACCCCTGTGCTTTGGGAATAG----GTGCTCTAAAATTATAAGGAATAAACACAGTTGCTCTCAGTATTCTTGTCCCAAAAAACCTTAGTCTCCAAAGCAAACAACTCATTGAAACCCACTGCCTTGTTTTTCTGCCAGCTTTGCTGTG----ATTTTTTATATGCCTTGCGCACATAGTCATACATTTAT-TTTCATATTTAAGGAGG--------GTTTCTGAAATA-------TATTT---------ACAAGGTCTTCATTCCCAGTGTTTATTGTTATTGGCTTTAAAGGTGTTGCCTTTATTTTAAACCATCTTTACTGTAGGTGAATGAATGGCAGGATGTCCTACTTAACTCATTTAGACTGTatttattaaacatgtagtaca-cgccaggcactgggattaaagggttgagtaaaatagacacagaccctgccatcaTTGTGTACATGGTGAGACTGAGATTCAACAGAGATAGAACCAAAGGAAAAGAAAAAAACAGATGAGAATAGTGCTTCTCAAGCCTTGTTTGACT-TTAGAGCCACCTGCGAGG i canFam3.chr1 C 0 I 60 a score=50850.000000 s hg38.chr9_GL383541v1_alt 68146 18 + 171286 G--TGTGTAGGCTTTACTGC s panTro4.chr9 68633821 18 + 137840987 G--TGTGTAGGCTTTACTGC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64788004 18 + 135191526 g--tgtgtaggctttactgc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57825859 18 - 122973662 g--tgtgtaggctttactgc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79758931 18 + 112192347 G--TGTGTAGGCTTTATTTC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80839186 18 + 112612857 G--TGTGTAGGCTTTATTTC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76888283 18 + 107442819 g--tGTGTAGGCTTTATTTC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81151674 18 + 108555830 G--TGTGTAGACTTTATTTC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111381132 18 - 210400635 G--TATGTAGGCTTTATTGC i calJac3.chr1 C 0 C 0 s mm10.chr19 38040974 15 - 61431566 GTCTGCGTAGCC-----TGC i mm10.chr19 C 0 C 0 e canFam3.chr1 35277148 60 - 122678785 I a score=1891567.000000 s hg38.chr9_GL383541v1_alt 68164 542 + 171286 AGACCAAGGCctccctcagtgattcc-atgtgcagccaaggttgagaacagctgGATTAGAAGGACCAGAGAGCATGTTGGCTCTTGAACTC----AATAAAGACTATTTTGCAAGTGATGACTTCTCAGCCAATGCGAATGTGGTTACTTACATAGACATGTAGAGAGTGAATACACAAGCCAGATCTGTAAACTG--------GGAAAAACAGA--CGGAAGGAGCAGGAGTCAGTTTTAGAGCAGGCA--GGACATGGTA--TTAGACTGCAGTATTTGAGAAGACCCAAGACTGCCTAAG-TAGGGGTTTCCAAACCATCCCTGAGTTCAGACATCAAGCTTCAGAGGCTCATGGAAGGAAGGTTAACTGGGAGGAAACAGACTTAATAGGCAAAATTGCCCTGGACAACAAATGGCTATATAAGACTATTCTGCCTACCTGGTGATCACAGCCATTCTTCTTTGCTCTGCTAATAGATGGATTTCTGTATTCAATTATGTTTGGAG-AAAAAA--ATGTTTTATATTCATGAATCTAGATTAGATTGCTCATTTTACAGA s panTro4.chr9 68633839 542 + 137840987 AGACCAAGGCctccctcagtgattcc-atgtgcagccaaggttgagaacagctgGATTAGAAGGACCATAGAGCATGTTGGCTCTTGAACTC----AATAAAGACTATTTGGCAAGTGACGACTTCTCAGCCAATGCAAATGTGGTTACTTACATAGACATGTAGAGAGTGAATACACAAGCCAGATCTGTAAACTG--------GGAAAAACAGA--TGGAAGGAGCAGGAGTCAGTTTTAGAGCAGGCA--GGACGTGCTA--TTAGACTGCAGTATTTGAGAAGACCCAAGACTGCCTAAG-TAGGGGTTTCCAAACCATCCCTGAGTTCAGACATCAAGCTTCAGGGGCTCATGGAAGGAAGGTTAACTGGGAGGAAACAGACTTAATAGGCAAAATTGCCCTGGACAACAAATGGCTATATAAGACTATTCGGCCTACCTGGTGATCACAGCCATTCTTCTTTGCTCTGCTAATAGATGGATTTCTGTATTCAATTATGTTTGGAG-AAAAAA--ATGTTTTATATCCATGAATCTAGATTAGATTGCTCATTTTACAGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64788022 544 + 135191526 agaccaaggcctccctcagtgattcc-atgtgcagccaaggttgagaacagctgGATTAGAAGGACCATAGAGCATGTTGGCTCTTGAACTC----AATAAAGACTATTTTGCAAGTGACGACTTCTCAGCCAATGCGAATGTGGTTACTTACATAGACATGTAGAGAGTGAATACACAAGCCAGATCTGCAAACTG--------GGAAAAACAGA--TGGAAGGAGCAGGAGTCAGTTTTAGAGCAGGCA--GGACGTGGTA--TTAGACTGCAGTATTTGAGAAGACCCAAGACTGCCTAAG-CAGGGGTTTCCAAACCATCCCTGAGTTCAGACATCAAGCTTCAGGGGCTCATGGAAGGAAGGTTAACTGGGAGGAAACAGACTTAATAGGCAAAATTGCCCTGGACAACAAATGGCTATATAAGACTATTTGGCCTACCTGGTGATCACAGCCATTCTTCTTTGCTCTGCTAATAGATGGATTTCTGTATTCAATTATGTTTGGAG-AAAAAAAGATGTTTTATATTCATGAATCTAGATTAGATTGCTCATTTTACAGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57825877 543 - 122973662 agaccaaggcctccctcagtgattcc-atgtgcagccaaggttgagaacagctgGATTAGAAGGACCATAGAGCATGTTGGCTCTTGAACTC----AATAAAGACTATTTTGCAAGTGACGACTTCTCAGCCAATGCGAATGTGGTTACTTACATAGACATGTAAAGAGTGAATACACAAGGCAGATCTGCAAACTG--------GGAAAAACAGA--TGGAAGGAGCAGGAGTCAGTTTTAGAGCGGGCA--GGACGTGGTA--TTAGACTGCAGCATTTAAGAAGACCCAAGACTGCCTAAG-CAGGGGTTTCCAAACCATCCCTGAGTTCAGACATCGAGCTTCAGGGGCTCATGGAAGGAAGGTTAACTGGGAGGAAACAGACTTAATAGGCAAAATTGCCCTGGACAACAAATGGCTATATAAGACTATTTGGCATACCTGGTGATCACAGCCATTCTTCTTTGCTCTGCTAATAGATGGATTTCTGTATTCAATTATGTTTGGAG-AAAAAAA-ATGTTTTATATTCATGAATCTAGATTAGGTTGCTCATTTTACAGA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79758949 540 + 112192347 AGACCAAGGCctccctcagtgattcc-atgtgcagccaaggttgagaacagctgGATTAGAAGGAGCATAGAGCATGTTGGCTCTTGAATTC----AATAAGGACTATTTTGCAAAT---GACTTCTCAGCCAGTGCGAATGTGGTTACTTACATAGACATGTAGAGAGTGAATACACAAGCCAGATTTGCAAACTG--------GGGAAAACAGA--TGGAAGGAGCAGGAGTCAGGTTTAGAGCAGGCA--GGACGTGGTA--TTAGACTGCAGTATTTGAGAAGACCCAAGACTGCCTAAG-CAGGGGTTTCCAAACCATCCCTGAGTTCAGACATCAAGCTTCAGGGGCTCGTGGAAGGAAGGTTAACTGGGAGGAAACAGACTTAATAAGCAAAATTGCCCTGGACAACAAATGGCTATATAAGACTATTTGGCCTACCTGGTGATCAGAGTCATTCTTCTTTGCTCTCCTACTAGATGAATTTCTGTATTCAGTTATGTTTGGAG-AAAAAAA-ATGTTTTATATTCATGAATCTAGATCAGATTGCTCATTTTCCAGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80839204 544 + 112612857 AGACCAAGGCctccctcagtgattcc-atgtgcagccaaggttgagaacagctgGATTAGAAGGAGCATAGAGCATGTTGGCTCTTGAATTC----AATAAGGACTATTTTGCAAATGACGACTTCTCAGCCAGTGCGAATGTGGTTACTTACATAGACATGTAGAGAGTGAATACACAAGCCAGATTTGCAAACTG--------GGGAAAACAGA--TGGAAGGAGCAGGAGTCAGGTTTAGAGCAGGCA--GGACGTGGTA--TTAGACTGCAGTATTTGAGAAGACCCAAGACTGCCTAAG-CAGGGGTTTCCAAACCATCCCTGAGTTCAGACATCAAGCTTCAGGGGCTCGTGGAAGGAAGGTTAACTGGGAGGAAACAGACTTAATAAGCAAAATTGCCCTGGACAACAAATGGCTATATAAGACTATTTGGCCTACCTGGTGATCAGAGCCATTCTTCTTTGCTCTCCTACTAGATGAATTTCTGTATTCAGTTATGTTTGGAGAAAAAAAA-ATGTTTTATATTCATGAATCTAGATCAGATTGCTCATTTTCCAGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76888301 543 + 107442819 AGACCAAGGCCTCCCTCAGTGATTCc-atgtgcagccaaggttgagaacagCTGGATTAGAAGGAGCATAGAGCATGTTGGCTCTTGAATTC----AATAAGGACTCTTTTGCAAGTGACGACTTCTCAGCCAATGGGAATGTGGTTACTTACATAGACATGTAGAGAGTGAATACACAAGCCAGATCTGCAAACTG--------GGGAAAACAGA--TGCAAGGAGCAGGAGTCAGGTTTAGAGCAGGCA--GGACGTGATA--TTAGACTGCAGTATTTGAGAAGACCCAAGACTGCCTAAG-CAGGGGTTTCCAAACCATCCCTGAGTTCAGACATCAAGCTTCAGGGGCTCGTGGAAGGAAGGTTAACTGGGAGGAAACAGACTTAATAAGCAAAATTGCCCTGGACAACAAATGGCTATATAAGACTATTTGGCCTACCTGGTGATCAGAGCCATTCTTCTATGCTCTCCTACGAGATGAATTTCTGTATTCAGTTatgtttggag-aaaaaaa-atgttttacattcatGAATCTAGATCAGATTGCTCATTTTCCAGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81151692 542 + 108555830 AGACCAAGGCctccctcagtgattcc-atgtgcagccaaggttgagaacagctgGATTAGAAGGAGCGTAGAGCATGTTGGCTCTTGAATTC----AATAAGGACTATTTTGCAAGTGACGACTTCTCAGCCAGTGCGAATGTGGTTACTTACATAGACATGTAGAGAGTGAATACACAAGCCAGATCTGCAAACTG--------GGG-AAACAGA--TGGAAGGAGCAGGAGTCAGGTTTAGAGCAGGCA--GGACGTGGTA--TTAGACTGCAGTATTTGAGAAGACCCAAGACTGCCTAAG-CAGCGGTTTCCAAACCATCCCTGAGTTCAGACATCAAGCTTCAGGGGTTCGTGGAAGGAAGGTTAACTGGGAGGAAACAGACTTAATAAGCAAAATTGCCCTGGACAACAAATGGCTATATAAGACTATTTGGCCTACCTGGTGATGAGAGCCATTCTTCTTTGCTCTGCTACTAGATGAATTTCTGTATTCAGTTATGTTTGGGG-GAAAAAA-ATGTTTTATATTCATGAATCTAGATCAGATTGCTCATTTTCCAGA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111381150 526 - 210400635 AGACCAAAGCCTCCCTCAGCAATTCC------------AGGTTGAGAACATCTGGATTAGAAGGAGCATAGAGTATGTTGGCTCTTGAACTC----AATAAAGACTATTTTGCAAGTGATGAATTCTCAGCCAGTGCAAATGTGGTTACTTACATAGACATGT--AGAGTGAATACACAAGCCAGATCTGCAAACTG--------GTAAAAACAAA--TGGAAGGAACAGGAACTGGGTTTAGAGCAGACA--GGATGTGGTA--TTCGATTGCAGTATTTGAGAAGACCCAAGATTGTCTAAG-CAAGGGTTTCCAAACCATCCCT--GTTCAGACATCAAGCTTCAGGGGCTCGTGGAAGGCAGGTTGATGGAGAGGAAATAGACTTAATAAGAAAAATTGTCCTGGACAACAAATGGCTGTATAGCTCTATTTGGCCTACCTGGTGATCACACCCACACTTCTTTGTTCCATTAATAGGTGGATTTCTGTATTCATTTATGTTTGGAG-AAAAAA--ATGTTTTATATTCATGAATCTAGATCAGATTGCTCA-TTTACAGA i calJac3.chr1 C 0 C 0 s mm10.chr19 38040989 444 - 61431566 AGACC-ATGTCTTGTTCAGGGATGCTGGTGTGTGG----GGTTGAAGGCTGGTGG------------------------------------------ATACAGACTGTTTCATAAGGGG-GCTTACATAAACACAGGGAGCAGGGTTGCCTGCCCTCA---------ATCAAATAC-CCAGCAAACTGTGCCAATTA--------GAAACAACTGA--------------GACCCAGGC---------ACA--AGATGCAGTG--CTGAGCCTCTAGTTTTGAGAAGATCGGA-ATTACCTAAGATAGAGATTTCCAAACCATCCCAAGGTTCAGACACCCTACTCCAAGGGTT------------------TGAGAGGAAACAGAATTGATGGGTAAAACTGTGCTCAACAGCAAAGATCCATATAAAACTGTGTGCTCCACCTGGTCATCCCAGCCGCTCCTCCTTGCTCTGTCAATA-ATGGACAACTGCATTGACCTGCACTTTTAA-A-------ACGTTTTAAAACTATAACTATAGAGCAAAATGCTCATTTTGTAGA i mm10.chr19 C 0 C 0 s canFam3.chr1 35277208 550 - 122678785 ATACCtagacctcccttggtgattccaaggtgcatccaacattgagaactgctgCATTAGAAGGAATGTACAGCATGTTGGCGCCTGACCTCAGTGAGTAAAGACTATTTGGCAGATGAGGATTTCTCAGCCCGTGTGAATGTGGTTACCGCCCCAGACAGGGAGAGAGTGGGTTCATGTATCAGGGCCGGCACCCAGCTCAGCCGGTGAAACAGACTTGGAGGCAGCAGGAGTCCGGCCCAGAGTGGACAGGGGAGGTGGTGGCTCTGGTTGGTATGTCGGAG-AGACTTAGGGCTGCCCAAGTCAGGAGTCTCCAAGTC----------CCACAGAACAAGCCACA-GGGCCCCTGGAAAAGAGATTAATTGGGAGGGAACAGACCTCAGAGGCAAAATTACCCCAGATGACAAAAGAGAGTCTAAAACTTTTTAGCCTGCCTGGCGACCCTAGACACTCTTCTTTTCTCTGTTAGTAGATGCAATTCTGTGTTCAATTATGTTTGAAA-AATAAC--AAGGTTTAAGGCCATGGATCTAAATCAGATCACTCATTTAAAAAA i canFam3.chr1 I 60 I 233 a score=242089.000000 s hg38.chr9_GL383541v1_alt 68706 66 + 171286 TATCATGAGGTTTACCTTCATTTAAACTCTTATTTCTAATCTTACGCTCCCACCATCGTAAGTCAT s panTro4.chr9 68634381 66 + 137840987 TATCATGAGGTTTACCTTCATTTAAACTCTTATTTCTAATCTTACGCTCCCACCATCGTAAGTCAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64788566 66 + 135191526 TATCATGAGGTTTACCTTCATTTAAACTCTTATTTCTAATCTTACGCTCCCACCATCGTGAGTCAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57826420 64 - 122973662 TATTATGAGGTTTACCTTCATTTAAACTCTTATTTCTAA--TTACGCTCCCACCATCATAAGTCAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79759489 66 + 112192347 TATCATGAGGTTTACCTTCATTTGAACTCTTATTTCTAATATTATGCTCCCACCATGGTAAGTCAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80839748 66 + 112612857 TGTCATGAGGTTTACCTTCATTTGAACTCTTATTTCTAATATTATGCTCCCACCATGGTAAGTCAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76888844 66 + 107442819 TATCATGAGGTTTACCTTCATTTGAACTCTTATTTCTAATACTATGTTCCCACCATGGTAAATCAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81152234 66 + 108555830 TATCATGAGGTTTACCTTCATTTGAACTCTTATTTCTAATATTATGCTCCCACCATCGTAAGTCAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111381676 66 - 210400635 TATCATGAGGCTTACCTTTATTTAAACTCTTATTTCTAATACGATGCTCCCACCATCGTAAGTCCT i calJac3.chr1 C 0 C 0 s mm10.chr19 38041433 57 - 61431566 TATTATGGGAGTTCTTT---------CTCTTCTTTCTAATATTATGCTTCTACCACTGGACATTAT i mm10.chr19 C 0 I 657 s canFam3.chr1 35277991 65 - 122678785 TATTCTGGGGTTTACCTTCATTTAAACCCTTCTTTCTATCATTATG-TTCCACCATCCCAAGTTGT i canFam3.chr1 I 233 C 0 a score=1262711.000000 s hg38.chr9_GL383541v1_alt 68772 388 + 171286 ATCTTCTCTATAATGCAATGAA-ATGAAATGTGTTTACCTCCACTGCTACGTTTTCTTTTTCAATGGAATA---TTCTTGTTCCTACTTGCTTTTATCCTTTATAATAGATGTAAAATGCAGAACTTGAAATGTGAAAGTCCAAA----TCAAAGCAAatatgtatgtgtacccatacata-----catacacacatatgtat-----atatgtgtgtgtgtat----------atatatttatttatgtatctgtactataGTGAAAT-----------------------------------------------------------------TTTCATAGGAACTCCTATTTTCTTCTTGCTTAAATGAAGCTGAAAGGTATATAACTC-TTTTGTTTGACAGAATTGCCTTGCACAATACATGAGAAAAAATATTCAGCCATGCTGATGGCAGTGTTCTTA-GCAAAACTGGTA---AGA----TAG s panTro4.chr9 68634447 384 + 137840987 ATCTTCTCTATAATGCAATGAA-ATGAAATGTGTTTACCTCCACTGCTACGTTTTCTTTTTCAATGGAATA---TTCTTGTTCCTACTTGCTTTTATCCTTTATAATAGATGTAAAATGCAGAACTTGAAATGTGAAAGTCCAAA----TCAAagcaaatatatatgtgtaccaatacata-----catacacacatatgtat-----atatgtgtgtgtgtat----------atatatttat----gtatctgtACTATAGTGAAAT-----------------------------------------------------------------TTTCATAGGAACTCCTATTTTCTTCTTGCTTAAATGAAGCTGAAAAGTATATAACTC-TTTTGTTTGACAGAATTGCCTTGCACAATACATGAGAAAAAATATTCAGCCATGCTGACGGCAGTGTTCTTA-GCAAAACTGGTA---AGA----TAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64788632 388 + 135191526 ATCTTCTCTATAATGCAATGAA-ATGAAATGTGTTTACCTCCACTGCTATGTTTTCTTTTTCAATGGAACA---TTCTTGTTCCTACTTGCTTTTATCCTTTATAATAGATGTAAAATGCAGAACTTGAAATGTGAAAGTCCAAA----TCAAAGCAAATATATATGTGTACCAatacata-----catacacacatacatat-----ataTGTGTGTGCGTAT----------ATATATTTATTTATGTATCTGTGCTATAGTGAAAT-----------------------------------------------------------------TTTCATAGGAACTCCTATTTTCTTCTTGGTTAAATGAAGCTGAAAGGTATATAACTC-TTTTGTTTGACAGAATTTCCTTGCACAATACATGAGAAAAAATATTCAGCCATGCTGACGGCAGTGTTCTTA-GCAAAACGGTTA---AGA----TAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57826484 382 - 122973662 ATCTTCTCTATAACGCAATGAA-ATGAAATGTGTTTACCTCCACTGCTACGTTTTCTTTTTCAATGGAATA---TTCTTGTTCCTATTTGCTTTTATCCTTTATAATAGACATAAAATGCAGAACTTGAAATGTGAAAGTCCAAA----TCAAagcaaatatatatgtgtaccaatacata-----catacacacatatgtat-----atatgtgtgtgtatat----------atatatttat----gtatctgtACTATAGTGAAAT-----------------------------------------------------------------TTTCATAGGAACTCCTATTTTCTTCTTGCTTAAATGAAGCTGAAAGGTATATAACTC---TTGTTTGACAGAATTGCCTTGCACAATACATGAGAAAAAATATTCAGCCATGCTGATGGCAGTGTTCTTA-GCAAAACTGGTA---AGA----TAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79759555 393 + 112192347 ATCTTCTCTATAATGTAATGAA-ATGAAATGTGTTTACCTCCACTGCTACATTTTCTTTTTCAATGGAATA---TTCTTGTTCCTACTTACTTTTATCCTTTATAGTAGACATAAAATGCAGAACTTGAAATGTGAAAGTCCAAA----TCAAAGCCAatatatatgtgtaccaatacata-----tacacatatgtatatat-----gtgtgtgtgtgtgtgt--------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------TAAATGAAGCTGAAAGATATATAACTC-TTTTGTTTGACAGAATTGCCTTGCACAATATATGAGAAAAAATATTCAGCCATGCTGATGGCAGTGTTCTTA-GCAAAGCTGGTA---AGATAGTTAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80839814 398 + 112612857 ATCTTCTCTATAATGTAATGAA-ATGAAATGTGTTTACCTCCACTGCTACGTTTTCTTTTTCAATGGAATA---TTCTTGTTCCTACTTACTTTTATCCTTTATAGTAGACATAAAATGCAGAACTTGAAATGTGAAAGTCCAAA----TCAAAGCCAatatatatgtgtaccaatacata-----tacacatatgtatatat-----gtgtgtgtgtatgtgtgtgtgtgtatatatatatat----ttatttgtactataGTGAAAT-----------------------------------------------------------------TTTCATAGGAACTCCTATTTTCTTCTTGCTTAAATGAAGCTGAAAGATATATAACTC-TTTTGTTTGACAGAATTGCCTTGCACAATATATGAGAAAAAATATTCAGCCATGCTGATGGCAGTGTTCTTA-GCAAAGCTGGTA---AGATAGTTAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76888910 386 + 107442819 ATGTTCTCTATAATGTAATGAA-ATGAAATGTGTTTACCTCCACTGCTACGTTTTCTTTTTCAATGGAATA---TTCTTGTTCCTACTTACTTTTATCCTTTATAGTAGACATAAAATGCAGAACTTGAAATGTGAAAGTCCAAA----TCAAAGCCAatatatatgtgtaccaatacata-----tacacatatatatatgt-----gtgtgtgtgtgtatgtgtgtgtatatata------------tatttgtactatAGTGAAAT-----------------------------------------------------------------TTTCATAAGAATTCCTATTTTCTTCTTGCTTAAATGAAGCTGAAAGATATATAACTC-TTTTGTTTGACAGAATTGCCTTGCAcaatatatgagaaaaaatattcagcCATGCTGATGGCAGTGTTCTTA-GCAAAGCTGGTA---AGA----TAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81152300 388 + 108555830 ATCTTCTCTATAATGTAATGAA-ATGAAATGTGTTTACCTCCACTGCTATGTTTTCTTTTTCAATGGAATA---TTCTTGTTCCTACTTACTGTTATCCTTTATAGTAGACATAAAATGCAGAACTTGAAATGTGAAAGTCCAAA----TCAAAGCCAatatatatgtgtaccaatacata-----catacacacatatgtat-----gtatgtgtgtgtgtgt----------atatacatat----ttatctgtactataGTGAAAT-----------------------------------------------------------------TTTCATAGGAACTCCTATTTTCTTCTTGCTTAAATGAAGCCGAAAGCTATATAACTC-TTTTGTTTGACAGAATTGCCTTGCACAATACATGAGAAAAAATATTCAGCCGTGCTGATGGCAGTGTTCTTA-GCAAAACTGCTA---AGATAGTTAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111381742 369 - 210400635 ATCTTCTCTAAAATGCAACGAA-ATGAAATGTGTTTACCTCCACAGCTACATTTTCTTTTTCAATGGAATA---TTCTTGTTCCTACCTGCTTTTATCCTTTATAATAGACATAAAATTCAGAACTTAAAATGTGAAAGTCCAAA----TCAAAGCAAatatagatgtgtatcaatacata-----catacacacacaca---------------tgtgtgtat----------atatatttaC---------TGTATTATAGTGAAAT-----------------------------------------------------------------TTTCATAGGCACTC---GTCTCTTCTTGTTTAAATGAAACTGAAATTTATATAATTT-TTTTGTTTGACAGAATTGCCTTGCACAATACATGAGAAAAAATATTCAGTCTTACTGACAGCGGTGTTC-TA-GTAAAACTGGTA---AGATAGTTAG i calJac3.chr1 C 0 C 0 s mm10.chr19 38042147 378 - 61431566 ATCTTCTATACAGTATATCAAAGATGAAATGTGTCGACATCTG---------TTTGTTTTTAAATAGAATATTCTTCTTGTCCCTTCTTACTATTATTCTTTATAATATACAT--AATGTAGAATTTAAAACAAGAAAATGTAAATATTTTAATAGATAGATAGGTATGTGCCAATATACA-----CACATA-------ATAT-----ACATATGTTTATTCAG----------ATGTATTTGT----TTGTAAACACCACGGTGAAGC-----------------------------------------------------------------CTTCACAGGCATGTACATTTTCTTCTGGTCTGAATGAAGCTGAAATGTGCATCACT----TCATTTGACA-AACCTTATTGCATAATTCATGAACAAAAGCACTCAGCTGTGCTCTGAGCAGTGTCGTTAGGCAGCGCAGTTACACAAAGAGCCCG i mm10.chr19 I 657 C 0 s canFam3.chr1 35278056 395 - 122678785 GTCTTCTCTGTAATGCAACAAA-AATAAATGTGTTCACCTTTATAGCTATATTTTCCTTTTATGTTGAATA---TCTTTGTTCCTACTTGCTTTTATACTTTATAATAGGCATAAAATGCTGAATATGAAATGAGAAAGtacaaa----taaaagtaaatgtgtatatatatatatatatatcttttacgtaaaaatgtatatttaaaatatatttaaattcag----------atttatttat----ttaCCTGTACTGTGGTGAAAT-----------------------------------------------------------------TTTCATAGGCACTCCTATCTTATTGTGGTTCGGATGAAGCTGAAATGCATATAACTCCTTTTGTTTGACAAAATTGCCTTGCATAATTCATGAGCAAAAACAACCACCTTGGCTCTCAGCAGTGTTATTG-GAAAAACTGTTA---AGA----TAG i canFam3.chr1 C 0 I 155 a score=443075.000000 s hg38.chr9_GL383541v1_alt 69160 135 + 171286 CATCTCTTGTCTTGTGAATGGACACATATTTTATGGAAGGAG--------------------------AATACCTTTTTCATACCAGGTACACCTGGGGAACTTGCAG-GGTGAATTCAGTTACTCATTATCTTCTGATGTCATCATCATCCACATGTATTT s panTro4.chr9 68634831 135 + 137840987 CATCTCTTGTCTTGTGAATGGACACATATTTTATGGAAGGAG--------------------------AATACCTTTTTCATACCAGGTACACCTGGGGAACTTGCAG-GGTGAATTCAGTTACTCATTATCTTCTGATGTCATCATCATCCACATGTATTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64789020 135 + 135191526 CATCTCTTGTCTTGTGAATGGACACATATTTTATGGAAGGAG--------------------------AATACCTTTTTCATACCAGGTACACCTGGGGAACTTCCAG-GGTGAATTCAGTTACTCATTGTCTTCTGTTGTTATCATCATCCACATGTATTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57826866 134 - 122973662 CATCTCTTGTCTTGTGAATGGACACATATTTTATGGAAGGAG--------------------------AATACCTTTTTCATATCAGGTACACCTGGGGAACTTGCA--GGTGAATTCAGTTACTCATTATCTTCTGATGTCATCATCATCCACATGTATTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79759948 135 + 112192347 CATCTCTTGTCTTGTGAATGGACACATATTTTATGGAAGGAG--------------------------AATACCTTTTTCATACCAGGTACACCTGGGGAACTTGTAG-GATGAATTCAGTTACTTATTGTCTTCTGATGTCATCACCATCCACATGTATTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80840212 135 + 112612857 CATCTCTTGTCTTGTGAATGGACACATATTTTATGGAAGGAG--------------------------AATACCTTTTTCATACCAGGTACACCTGGGGAACTTGTAG-GATGAATTCAGTTACTTATTGTCTTCTGATGTCATCACCATCCACATGTATTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76889296 135 + 107442819 CATCTCTTGTCTTGTGAATGGACACATATTTTATGGAAGGAG--------------------------AATACCTTTTTCATACCAGGTACACCTGGGGAACTTGCAG-GATGAATTCAGTTACTTATTGTCTTCTGATGTCATCACCATCcacatgtattt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81152688 135 + 108555830 CATCTCTTGCCTTGTGAATGGACACATATTTTATGGAAGGAG--------------------------AATACCTTTTTCATACCAGGTACACCTGGGGAACTTGCAG-GATGAATTCAGTTACTTATTGTCTTCTGATGTCATTGCCATCCACATGTATTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111382111 134 - 210400635 CATCTCTTGTCTTGTGAATGAACATATATTTTATGGAAGGAG---------------------------ATACCTTTTTCCTACCAGGTACACCTGGGGAACTTGTGG-GGTGAATTCAGTTACTCATTATCTTCTGATGTCATCACCATCCACATTTATTT i calJac3.chr1 C 0 C 0 s mm10.chr19 38042525 158 - 61431566 AGCCTCCTGTCTTAGTAAAGAACACACTTCTCATGGAAGCAGTATACTTATGAGACTGGTGGAAGCAGGATGCCTCTTCCCTTCCCAGTACACTTCTGAGACTGGTGGAGATG--CTCA-TTAGCCATTGTGCT-TGCCATCATCACTGTCCACATTCACTA i mm10.chr19 C 0 C 0 e canFam3.chr1 35278451 155 - 122678785 I a score=652278.000000 s hg38.chr9_GL383541v1_alt 69295 322 + 171286 TAAATACAGGGACAG---------------------------------------ttt--tttttttttttt------ttcttcagatggagccttgctctgttgcccaggctggagtggcagtggtaagatctcgggttactgaaacctccacctcccgggttcaagcagttctccttcctcagcctcccaagtagctgggattacaggcaccaaccaccatgcccggctaa--ttttt---ttttttttatttttagtagaaatggggtttcaccatgttggtcaggctggttttgaactcctgacctcaagtgatccacccaccttgacttcccaaagtgctgggattacaggcataagccaccgcactcgg s panTro4.chr9 68634966 323 + 137840987 TAAATACAGGGACAG---------------------------------------ttt--tttttttttttt--------cttcagatggagccttgctctgttgcccaggctggagtggcagtggtaagatctcaggttactgaaacctccacctcccgggttcaagcagttctccttcctcagcctcccaagtagctgggattacaggcaccaaccaccatgcctggctaa--ttattattttttttttatttttagtagaaatggggtttcaccatgttggtcaggctggtttcgaactcctgacctcaagtgatccacccgcctcgacttgccaaagtgctgggattacaggcataagccaccgcactcgg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64789155 324 + 135191526 TAAATACAGGGACAG---------------------------------------ttt--tctttttttttt------ttcttcagatggagccttgctctgctgcccaggctggagtggcagtgctaagatcttgggttactgaaacctccacctcccgggttcaagcagttctcctgcctcagtctcccaagtagctgggattacaggcacccaccaccacacccggctaa--ttatt-ttatttttttatttttagtagaaatggggtttcaccatgttcgtcaggctggtttcgaactcctgacctcaagtgatccaccctcctcgacttcccaaagtgctgggattacaggcataagccaccacatgcgg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57827000 327 - 122973662 TAAATACAGGGACAg---------------------------------------ttt--ttttttgtttttttttgttttttcagacggagccttgctttgtcgcccaggctggagtggcagtggtaagatctcgggttactgaaacctccacctcctgggttcaagcagttctcctgcttcagcctcccaagtagctgagattacaggcacccaccaccatgcctggctga--ttatt----tttttgtatttttagtagagatggggtttcaccaagttggtcaggctggtttcgaactcctgacctcaagtgatccactcgcctcgacttcccaaagtgctgggattacaggcatgagccactgcgcccgg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79760083 342 + 112192347 TAAATACAGGGACAGGTTTTTATTTATTTTTGG---------------------Gtt--tttttttgttttttttttttttaaagatgaagccttcctctgttgcccaggctggaatggcagtggtatgatctcaggttactgaaacctccacctcctgg---------gttcccctgcctcagcctcccaagtagctgggattacaggcacccaccaccacgcccagttaattttttttttttttttgtatttttagtagagatgggttttcaccatgttggtcaggctggtttcgaactcctgacctcaagtgatccacccgcctcgacttcccaaagtgctgggattacagatatgagccaccgtgcctgg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80840347 349 + 112612857 TAAATACAGGGACAGGtttttatttatttttggtttgg--------------ttttt--ttttttttttttttttttttttaaagatgaagccttcctctgttgcccaggctggaatggcagtggtatgatctcaggttactgaaacctccacctcctgg---------gttcccctgcctcagcctcccaagtagctgggattacaggcacccaccaccacgcccagttaattttttttttttttttgtatttttagtagagatgggttttcaccatgttggtcaggctggtttcgaactcctgacctcaagtgatccacccgcctcggcttcccaaagtgctgggattacagatatgagccaccgtgcccgg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76889431 340 + 107442819 taaatacagggacagttttttatttatttttgg---------------------ttt--tttttttttttttttttttttaaaagatgaagccttcctctgttgcccaggctggaatggcagtggtatgatctcgggttactgaaacctccacctcctgg---------gttcccctgcctcagcctcccaagtagctgggattacaggcacccaccaccatgcccagttaa--ttttttttttttttgtattttcagtagagatgggttttcaccatgttggtcaggctggtttcgaactcctgaccgcaagtgatccacccgcctcgacttcccaaagtgctgggattacagatatgagccaccgtgcctgg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81152823 363 + 108555830 TAAATACAGGGACAGTTttttatttatttttgttttggtttggttttttgtttttttggtttttttgtttttttgttttttttagatgaagccttgctctgttgcccaggctggaatggcagtggtatgatctcgggttactgaaacctccacctcctgg---------gttcccctgcctcagcctcccaagtagctgggattacaggcacccaccaccacgcccagttaa--ttttttttttttttttttttttagtagagataggttttcaccatgttggtcaggctggtttcaaactcctgacctcaagtgatccacccgcctcgacttcccaaagtgctgggattacagacatgagccaccgtgcccgg i chlSab2.chr12 C 0 C 0 s mm10.chr19 38042683 128 - 61431566 ------------------------------------------------------TGT--TTTTCTTTACTT--------------------CACTGttttcttttccagccagga------------------------------------------------------gccctc-----------------------------------------------------------------------------------tagaga-----------------gatcaggctgaccttgaactcacaatctc----------cccaagtcagtctccccac-tgatgggattagggg-----gttgccacaccaga i mm10.chr19 C 0 C 0 e canFam3.chr1 35278451 155 - 122678785 I e calJac3.chr1 111382245 0 - 210400635 C a score=7821.000000 s hg38.chr9_GL383541v1_alt 69617 2 + 171286 cc s panTro4.chr9 68635289 2 + 137840987 cc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64789479 2 + 135191526 cc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57827327 2 - 122973662 cc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79760425 2 + 112192347 cc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80840696 2 + 112612857 cc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76889771 2 + 107442819 cc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81153186 2 + 108555830 cc i chlSab2.chr12 C 0 C 0 s mm10.chr19 38042811 2 - 61431566 cc i mm10.chr19 C 0 I 9 s canFam3.chr1 35278606 2 - 122678785 CT i canFam3.chr1 I 155 C 0 e calJac3.chr1 111382245 0 - 210400635 C a score=4171662.000000 s hg38.chr9_GL383541v1_alt 69619 1046 + 171286 TA-AATACAGGGACATTTCTATGTTTAGAAGGAATATCTTCCCTACCTGACAAATGATGTAGTGGAAAATGTGTTCTGAGAACTGA---TCTTTGGTAGAACAAACACTCTCTATCGGGTAATGCAG--CCTTTTCTTATATTTTCA---TCCTTTGTTAAATACCATATAAAGTGAAGCTCCCTTTCCAAATATTATGTGACCTTTCATTGTGGGTTCATCACTTGGTTTTCTGTTGCTGGTTGCTAAGGTAAACTTCTCTTCTAAAACTGCCACTTGGGCCAGCAGGGCTTAAAGCTACACCCTATGACAGACCCTATGACAAAGGGTGGAACAAACATCTGTGGTTGTGGTTTCAAATGTTGGCAGATTGTTTACACTGGAGATTGCCTCCTGGCATTTG-TTTTGTTTTTGCCAGGCTTAATGCTTTGTAATCTTTTAAGACTACTTTTGCAGTGTTAGCTATGATATGAGGATAATTTCCCTGTTGTCAGGGAGAACCAAAATGGCATTC-AAGACGGCTAAGCAATGCTGACCTCACCATTTCTCCATGTATTGCTGATCTCTGCACTTTGGGACTCCTTGAAATTTGAGGCT----------------GATAAAACTATAGCTCTCTTTAATCTAGAAATGTCACACACTGAAACATTTTCTAAATGCTTCCCACAAACTCTGCATTCCAGAAAGGCAGAGAATTGTGCATTTCAACAATCTTTTGTGTATCCTGACATAGTG-AGAATTTGTATTTCAGAAAATA-TAACAGTAGAGGTATATGTGAAAATAA-TAACTGTGGTGTGAGTTGCCAGCAAAGTTA-CAGTTCTCATTAAATATTATATTTCCT-------------TGAATAACAGCAAATTGAGTAATTTGCAAGAAATTGAAACCTAATAGGAGATTTCCATAATAAAAAAGAGTTTT----------------------------------AATGTAG-CTTTATATATAA------ACATGATAAAACAAG------------ACTACCATCAGGAAGAAGTTTACCCATTTATTTAAAAATATAGAAAGC--ACATACTAGGAGACAGGCAGATATAGTGGGTACCCCTATATGCTTAAAATCCTAATGAGGA s panTro4.chr9 68635291 1046 + 137840987 TA-AATACAGGGACATTTCTATGTTTAGAAGGAATATCTTCCCTACCTGACAAATGATGTAGTGGAAAATGTGTTCTGAGAACTGA---TCTTTGGTAGAACAAACACTCCCTATCAGGTAATGCAG--CCTTTTCTTATATTTTCA---TCCTTTGTTAAATACCATATAAAGTGAAGCTCCCTTTCCAAATATTATGTGACCTTTCATTGTGGGTTCATCACTTGGTTTTCTGTTGCTGGTTGCTAAGGTAAACTTCTCTTCTAAAACTGCCACTTGGGCCAGCAGGGCTTAAAGCTACACCCTATGACAGACCCTATGACAAAGGGTGGAACAAACATCTGTGGTTGTGGTTTCAAATGTTGGCAGATTGTTTACACTGGAGATTGCCTCCTGGCATTTG-TTTTGTTTTTGCCAGGCTTAATGCTTTGTAATCTTTTAAGACTACTTTCGCAGTGTTAGCTATGATATGAGGATAATTTCCCTGTTGTCAGGGAGAACCAAAATGGCATTC-AAGACGGCTAAGCAATGCTGACCTCACCATTTCTCCATGTATTGCTGATCTCTGCACTTTGGGACTCCTTGAAATTTGAGGCT----------------GATAAAACTATAGCTCTCTTTAATCTAGAAATGTCACACACTGAAACATTTTCTAAATGCTTCCCACAAACTCTGCATCCCAGAAAGGCAGAGAATTGTGCATTTCAACAATCTTTTGTGTATCCTGACATAGTG-AGAATTTGTATTTCAGAAAATA-TAACAGTAGAGGTATATGTGAAAATAA-TAACTGTGGTGTGAGTTGCCAGCAAAGTTA-CAGTTCTCATTAAATATTATATTTCCT-------------TGAATAACAGCAAATTGAGTAATTTGCAAGAAAGTCAAACCTAATAGGAGATCTCCATAATAAAAAAGAATTTT----------------------------------AATGTAG-CTTTATATATAA------ACATGATAAAACAAG------------CCTACCATCAGGAAGAAGTTTACCCATTTATTTAAAAATATAGAAAGC--ACATACTAGGAGACAGGCAGATATAGTGGGTACCCCTATATGCTTAAAATCCTAATGAGGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64789481 1044 + 135191526 TA-AATACAGGGACATTTCTATGTTTAGAAGGAATATCTTCCCTATCTGACAAATGATGTAGTGGAAAATGTGTTCTGAGAACTGA---TCTTCGGTAGAACAAACACTCTGTATCGGGTAATGCAG--CC--TTCTTATATTTTCA---TCCTTTGTTAAATACCTTATAAAGTGAAGCTCCCTTTCCAAATATTATGTGACCTTTAATTGTGGGTTCATCACTTGGTTTTCTGTTGCTGGTTGCTAAGGTAAACTTCTCTTCTAAAACTGCCACTTGGGCCAGCAAGGCTTAAAGCTACACCCTATGACAGACCCTATGACAAAGGGTGGAACAAACATCTGTGGTTGTGGTTTCAAATGTTGGCAGATTGTTTACACTGGAGATTGCCTCCTGGCATTTG-TTTTGTTTTTGCCAGGCTTAATGCTTTGTAATCTTTTAAGACTACTTTTGCAGTCTTAGCTATGATATGAAGATAATTTCCTTGTTGTCAGGGAGAACCAAAATGGCATTC-AAGACGGCTAAGCAATGCTGACTTCACCATTTCTGTATGTATTGCTGATCTCTGCACTTTGGGACTCCTTGAAATTTGAGGCT----------------GATAAAACTATAGCTCTCTTTAATCTAGAAATGTCACACACTGAAACATTTTCTAACTGCTTCCCACAAACTCTGCATTCCAGAAAGGCAGAGAATTGTGCATTTCAACAATCCTTTGTGTACCCTGACATAGTG-AGAATTCATGTTTCAGAAAATA-TAACAGTAGAGGTATATGTGAAAATAA-TAACTGTGGTGTGAGTTGCCAGCAAAGTTA-CAGTTCTCATTAAATATTATATTTCCT-------------TGAATAACAGCAAATTGAGTAATTGGCATGAAATTCAAACCTAATAGGAGATCTCCATGATAAAAAAGAGTTTT----------------------------------AATGTAG-CTTTATATATAA------ACATGATAAAACAAG------------CCTACCATTAGGAAGAAGTTCACCCATTTATTTAAAAATATAGAAAGC--ACATACTAGGAGACAGGCAGATATAGTGGGTACCCCTATATGCTTAAAATCCTAATGAGGA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57827329 1044 - 122973662 TA-AATACAGGGACATTTCTATGTTGAGAAGGAATATCTTCCCTACCTGACAAATGATGTAGTGGAAAATGTGTTCTGAGAACTGA---TCTTTGGTAGAACAAACACTATCTATCAGGTAATGCAG--CCTTTTTTTATATTTTCA---TCCTTTGTTAAATACCATATAAAGTGAAGCTCCCTTTCCAAATATTATGTGACCTTTCATTGTGGGTTCATCACTTGGTTTTCTGTTGGTGGTTGCTAAGGTAAACTTCTCTTCTAAAACTGCCACTTGGGCTAGCAGGGCTTAAAGCTACACCCT-TCCCAGACCCTATGACAAAGGGTGGAACAAACATCTGTAGTTGCGGTTTCAAATGTTGGCAGATTGTTTACACTGGAGATTGCCTCCTGGCATTTG-TTTTGCTTTTGCCAGGCTTAATGCTTTGTAATCTTTTAAGACTACTTTTGCAATGTTAGCTATGATATGAGGATAATTTCCCTGTTGTCAGGAAGAACCAAAATGGTATTC-AAGACGGCTAAGCAATGCTGACCTAATCACTTCTCCATGTATTGCTGATCCCTGCACTTTGGGACTCCTCGAAATTTGAGGCT----------------GATAAAACTATAGCTCTCTTTAATCTAGAAATGTCACACACTGAAACATTTTCTAAATGCTTCCCACAAACTCTGCATTCCAGAAAGGCAGAGAATTGTGCATTTCAACAGTCCTCTGTGTATCCTGACATAGTG-AGAATTTGTGTTTCAGAAAATA-TAACAGTAGGGGTATACGTGAAAATAA-TAAGTGTGGTGTGAGTTGCCAGCAAAGTTA-CAGCTCTCATTAAATATTATATTTCCT-------------TGAATAACAGCAAATTGAGTAA-TGGCATGAAATTCAAACCTAACAGGAGATCTCCATAATAGAAAAGAGTCTT----------------------------------AATGTAG-CTTTATATATAA------ACATGATAAAACAAG------------CCTACCATCCGGAAGAAGTTTACCCATTTATTTAAAAATACAGAAAGC--ACCTACTAGGAGACAGGCAGATATGGTGGGTACCCCTATATGCTTAAAATCCTAATGAGGA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79760427 1045 + 112192347 TA-AATACAGGGACATTTCTATGTTTAGAAGGAATATCTTCCCTACCTCACAAATGATGTAGTGGAAAATATGTTCGGAGAGCTGA---TCTCTGGTAGAACAAACACTATGTATCAGGTAATGCAG--CCTTTTCTTATGTTTTCA---TCCTTTGTTAAATACCATATAAAGTGAAGCTCCCTTTCCAAATATTATGTGACCTTTCATTGTGGGTTCATCACTTGGTTTTCTGTTGGTGGTTGCTAAGGTAAACTTCTCTTCTAAAACTGCCACTTGGGCCGGCAGGGCTTAAAGCTACACCCT-TCCCAGACCCTATGACAAAGGGTGGAACAAACATCTGTGGTTGTGGTTTCAAATGTTGGCAGATTGTTTACACTGGAGATTGCCTCCTGGCATTTG-TTTTGCTTTTGCCAGGCTTAATGCTTTGTAATCTTTTAAGACTACTTTTGCAGTGTTAGCTATGATATGAGGATAATTTCCCTGTTGTCAGGGAGAACCAAAATGGCATTC-AAGACGGCTAAGCAATGCTGACCTCATCACTTCTCCATGTATTGCTGATCTCTGCACTTTGGGACTCCTCAAAATTTGAGGCT----------------GATAAAACTATAGCTCTCTTTAATCTAGAAATGTCACACACTGAAACATTTTCTCAATGCTTCCCACAAACTCTGCATTCCAGAAAGGCAGAGAATTGTGCATTTCGACAATCCTTTCTGTATCCTGACATAGTG-AGAATTTGTGTTTCAGAAAATA-TAACAGTAGAGGTATATGTGAAAATAA-TAAGTGTGGTGTGAGTTGCCAGCAAAGTTA-CAGCTCTCATTAAATATTATATTTCCT-------------TGGATAACAGCAAACTGAGTAATTGGCATGAAATTCAAACCTAATAGGAGATCTCCATAATAGAAGAGAGTTTT----------------------------------GATGTAG-CTTTGTATACAA------ACATGATAAAACAAG------------CCTACCATCAGAAAGAAGTTTACCCATTTATTTAAAAATATAGAAAGC--ACCTACTAGGAGACAGGCAGATATGGTGGGTACCCCTATATGCTTAAAATCCTAAAGAGGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80840698 1045 + 112612857 TA-AATACAGGGACATTTCTATGTTTAGAAGGAATATCTTCCCTACCTCACAAATGATGTAGTGGAAAATATGTTCGGAGAGCTGA---TCTCTGGTAGAACAAACACTATGTATCAGGTAATGCAG--CCTTTTCTTATGTTTTCA---TCCTTTGTTAAATACCATATAAAGTGAAGCTCCCTTTCCAAATATTATGTGACCTTTCATTGTGGGTTCATCACTTGGTTTTCTGTTGGTGGTTGCTAAGGTAAACTTCTCTTCTAAAACTGCCACTTGGGCCGGCAGGGCTTAAAGCTACACCCT-TCCCAGACCCTATGACAAAGGGTGGAACAAACATCTGTGGTTGTGGTTTCAAATGTTGGCAGATTGTTTACACTGGAGATTGCCTCCTGGCATTTG-TTTTGCTTTTGCCAGGCTTAATGCTTTGTAATCTTTTAAGACTACTTTTGCAGTGTTAGCTATGATATGAGGATAATTTCCCTGTTGTCAGGGAGAACCAAAATGGCATTC-AAGACGGCTAAGCAATGCTGACCTCATCACTTCTCCATGTATTGCTGATCTCTGCACTTTGGGACTCCTCAAAATTTGAGGCT----------------GATAAAACTATAGCTCTCTTTAATCTAGAAATGTCACACACTGAAACATTTTCTCAATGCTTCCCACAAACTCTGCATTCCAGAAAGGCAGAGAATTGTGCATTTCGACAATCCTTTCTGTATCTTGACATAGTG-AGAATTTGTGTTTCAGAAAATA-TAACAGTAGAGGTATATGTGAAAATAA-TAAGTGTGGTGTGAGTTGCCAGCAAAGTTA-CAGCTCTCATTAAATATTATATTTCCT-------------TGGATAACAGCAAATTGAGTAATTGGCATGAAATTCAAACCTAATAGGAGATCTCCATAATAGAAGAGAGTTTT----------------------------------GATGTAG-CTTTGTATACAA------ACATGATAAAACAAG------------CCTACCATCAGAAAGAAGTTTACCCATTTATTTAAAAATATAGAAAGC--ACCTACTAGGAGACAGGCAGATATGGTGGGTACCCCTATATGCTTAAAATCCTAAAGAGGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76889773 1044 + 107442819 ta-aatacaGGGACATTTCTATGTTTAGAAGGAATATCTTCCCTACCTCACAAATGATGTAGTGGAAAATATGTTCTGAGAGCTGA---TCTCTGGTAGAACAAACACTATGTATCAGGTAATGCAG--ccttttcttatgttttca---tcCTTTGTTAAATACCATATAAAGTGAAGCTCCCTTTCCAAATATTATGTGACCTTTCATTGTGGGTTCATCACTTGGTTTTCTGTTGGTGGTTGCTAAGGTAAACTTCTCTTCTAAAACTGCCACTTGGGCCGGCAGGGCTTAAAGCTACACCCT-TCCCAGACCCTATGACAAAGGGTGGAACAAACATCTGTGGTTGTGGTTTCAAATGTTGGCAGATTGTTTACACTGGAGATTGCCTCCTggcatttg-ttttgcttttgccaGGCTTAATGCTTTGTAATCTTTTAAGACTACTTTTGCAGTGTTAGCTATGATATGAGGATAATTTCCCTGTTGTCAGGGAGAACCAAAATGGCATTCAAAGACGGCTAAGCAATGCTGACCTCATCACTTCTCCATGTATTGCtgatctctgcactttgggactCCTCAAAATTTGAGGCT----------------GATAAAACTATAGCTCTCTTTAATCTAGAAATGTCACACACTGAAACATTTTCTCAATGCTTCCCACAAA--CTGCATTCCAGAAAGGCAGAGAATTGTGCATTTCGACAATCCTTTCTGTATCCTGACATAGTG-AGAATTTGTGTTTCAGAAAATA-TAACAGTAGAGgtatatgtgaaaataa-taagTGTGGTGTGAGTTGCCAGCAAAGTTA-CAGCTctcattaaatattatatttcct-------------TGGATAACAGCAAATTGAGTAATTGGCATGAAATTCAAACCTAATAGGAGATCTCCATAATAGAAGAGAGTTTT----------------------------------GATGTAG-CTTTGTATACAA------ACATGATAAAACAAG------------CCTACCATCAGGAAGAAGTTtgcccatttatttaaaaatatagaaagc--acCTACTAGGAGACAGGCAGATATGGTGGGTACCCCTATATGCTTAAAATCCTAAAGAGGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81153188 1045 + 108555830 TA-AATACGGGGACATTTCTATGTTTAGAAGGAATATCTTCCCCATCTCACAAATGATGTAGTGGAAAATGTGTTCTTAGAGCTGA---TCTCTGGTAGAACAAACACTATCTATCGGGTAATGCAG--CCTTTTCTTAAATTTTCA---TCCTTTGTTAAATACCATATAAAGTGAAGCTCCCTTTCCAAATATTATGTGACCTTTCATTGTGGGTTCATCACTTGGTTTTCTGTTGGTGGTTGCTAAGGTAAACTTCTCTTCTAAAACTGCCACTTGTGCCGGCAGGGCTTAAAGCTACACCCT-TCCCAGACCCTATGACAAAGGGTGGAACAAACATCTGTGGTTGTGGTTTCAAATGTTGGCAGATTGTTTACACTGGAGATTGCCTCCTGGCATTTG-TTTTGCTTTTGCCAGGCTTAATGCTTTGTAATCTTTTAAGACTACTTTTGCAGTGTTAGCTATGATATGAGGATAATTTCCCTGTTGTCAGGGAGAACCAAAATGGCATTC-AAGATGGCTAAGCAATGCTGACCTCATCACTTCTCCATATATTGCTGATCTCTGCACTTTGGGACTCCTCAAAATTTGAGGCT----------------GATAAAACTATAGCTCTCTTTAATCTAGAAATGTCACACACTGAAACATTTTCTCAATGCTTCCCACAAACTCTGCATTCCAGAAAGGCAGAGCATTGTGCATTTCAACAATCCTTTCTGTATCCTGACATAGTG-AGAATTTGTGTTTCAGAAAATA-TAACAGTAGAGGTATATGTGAAAATAA-TAAGTGTGGTGTGAGTTGCCAGCAAAGTTA-CAGCTCTCATTAAATACTATATTTCCT-------------TGGATAACAGCAAATTGAGTAATTGGCATGAAATTCAAACCCAATAGGAGATCTCCATAATAGAAGAGTATTTT----------------------------------GATGTAG-CTTTGTATACAA------ACATGATAAAACAAG------------CCTACCATCAGGAAGAAGTTTACCCATTTATTTAAAAATATAGAAAGC--ACCTACTAGGAGACAGGCAGATATGGTGGGTACCCCTATATGCTTAAAATCCTAAAGAGGA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111382245 1071 - 210400635 TA-AATACAAGGACATTTCTATGTTTAGAAGGAATATCTTCCCTGCCTGACAAATGCTGTAGTGGAGAATGTATTCTGAGGACTGA---TCTTTGGTCGAACAAACACTGTCTATTGGGTACGGCCG--CCTTTTCTTACATTTTCA---TCCTTTGTTAAATACCATATGAAGTGAAGCTCCCTTTCCAAATATTCTGCGACCTTTCATTGTGGGTTCATCACTTGGTTTTCTGTTGGTAGTTGCTAAGGTAAACTTCTCTTCTAAAACTGCCACTTGGGTCTGCAGGGTTTAAAGCTACACCCT-TCCCAGACCCTATGACAAAGGGTGGAACAAACATCTGTGGTTGTGGTTTCAAATGTTGACAGATTGTTTACACTGGAGATGGCCTCCTGGCATTTG-TTTTGCTTTTGCCAGGCTTAATGCTTCGTAATCTTTTAAGACTACTTTTGCAGTATTAACTATGATCTGAGGATAATTTCCCTGTTGCCAGGGAGAACCAAAATGGCATTC-AAGACAGCTAAGCAATGCTGACCTCATCACTTCTCCATGTATTGCTGATCTCTGCACTTTGGGACTCCTCAAAATTTGAGGTT----------------GATAAAACTGTAGCTCTCTTTAATCTAGAAATGTCACACACTGAAACATTTTCTGAATGCTTGCCACAGTCTCTGCATTCCAGAAAGGCAGAGAATTGTGCATTTCAACCATCCTTTGTGTATCCTGACATAATG-AGAATTCGTGTTTCAGAAAATA-AAACAGTGGAGATATAGGTGAAAATAG-TAGGTGTGGTGTGAGTTGCCAACAAAGTTA-CAGCTCTCATTAAATATTATATTTGCT-------------TGAATAACAGTAAATTGAGTAATTGGCATGAAATTCAAACCTAATAGGAGATCTCCATAATAGAAAgtaacttttatctgtaactttaatgtaacttttaatgtTTTAAATGTAA-CTTTATATATAA------ACATGATAAAACAAG------------CCTATCATCAGGAAAGAGTTTACCCATTTATTTAAAAATATAGAAAGC--AC---CTAGGAGACAGGCAGATATGGCATGTACTCCTATATGCTTAAAACCCTAAT----- i calJac3.chr1 C 0 C 0 s mm10.chr19 38042822 1033 - 61431566 TATGTTAGAGAAGCATGTCAGTATATCCGAGGAGTATCTTT-----------------------GAGAAAATATTCTGAGAGCTGG---TGTCTAACAGGGC-AACATTC----TCATTTAATGGAGGCCCTTTTTTTTTTCTTTTT---TTATTTCCTCAA-GCTTTGTAAAGCTGCCTTCCCTTTCCAACAGCCTCATGACCTTACCCTGTGGGTTCATCACTTGCTTTCCTGTTGGTAGTTGCTAAGGTAAACTTCTCTTTCAGAACGGCCACTGAGGTCAGCAGGGTTTAAA-CCACACCCT-GCATAGCCCTAAAGAAAAAGTGCAG-ACAAACCTCAG-AGTGGCAGTTTCCAGTGTCGGCCT-CTGTTTACATTGGAGATTGCTGCTGGCCGTCTC-CTTAAGCCCT------CATAACATTCTGTAATCTTTTGACACAACTTTTGCGGTGTTACCTACAATGAGAAG----TTTCCCTGATGTCAGGGGG------AATGTCCTTG-GAGACAGCT--GCGAAGC---------CACTGCT-CAGGGAGTGCTGACCTCTGTCCTTTGTAATGCCTCCAAACTAGGAGTTTAACTTTAAAAAATAAAATAAAGACATTGCTCTCTTTAATGTGGAAATGTCACACGTTGGAATGTCTTCTGAATGCTTCTCACAAACTCTACATTCCAGAAAGGCAAAGAAGTATGCATGCTAATACTTCTTTGCGTATCTCAACGTATTGTGGGGTTGACGTTTCAAAAAATATTAGCAGTAGGGACATATGCTATGGTAGTTAAGTATGGCATGAGTCACTAGTAAAGATACCAGCTGCCTTTAAATGTCATATTTCCTGGAGTGAAATTTAGGAATAACAG-----TGAGTAATTATTATAAGATTAGAAACTAATGAGAAATCTCCATAGTGAGAGAGA-TTTT----------------------------------AATG-GT-CTTTATATTTAAAAAAACACAAAAAAAACCAAAAAACAGTGAACTCCTACTGTCAGGAGGAAGTTTACTCATTTATTTAAAAATATAGAAAATAAACCTGCTAAGAACCAAGCAGATATGTTGTGTGCTCTTAAATATGAAAAACCCTACCAAGGA i mm10.chr19 I 9 C 0 s canFam3.chr1 35278608 1028 - 122678785 TA-GATAAAAGGACCTTTCTAATTTTCCAACGAATATCTTCCCCACCTGGCAAGTCACGTAGTGGAAAATGTGTTCTGAGAACTGATTTTTTTTGGTAGAAAAAAAACAC--TATCCGATAATGCAG--CCTTTTCTTACATTTTCATATTTATTTGTTAAACATCGTATCAAGCGAAGCTCCCTTTCCAAATATCCCATGACCTTTCACTGTGGGTTCATCATTTGGTTTTCTGTTGATGGTTGCTAAGGTAAACTTCTCTTCTTAAACTGCCACTGGGGCCAGCAGGGTTTAAATCTGCACCCT-TCCCAGACCCTACAAAGGAGGGTGGAACCAACATCTGTGGTAGTGGTTTCAAATGTTGGTAGATTGTTTACACTGGAGATTGTCTGCTGGTATTTGTTTTTACTTTTGCCAGGCTTAACGCTTTGTAATCTTTTAAGACTACTTTTGCAGTGTTAGGCAGGATATAAGAATAATTTCCCCGTTGTCAGGGGGAACGAATATGGCATTC-AAAAAGTCTAAGCAATGCTGACCTCATCAGTTCCCGATGTATCGCTGATCTCTGCACTTTGGAACTCCTCAAAATTTGAAGCT----------------GATAAAACTATAGCTCTCTTTAATCTAGAAATGTCACACACTGAAACATTTTCTGAATGCCTCCCATAAATTCTGCATTCCAGAAAGGCAAAGAATTGTGTATTTTAACAATCCTTTGTGTATCTTGACATAATG-AGAATTTGAGTTTCGGGAAGT--TAACAGTGGGAGCATACATGAAAATAT-TAAGTGTAGTGTGGGTTGCCATTGAAATTA-CAGCTCACATTAAATGCCACATTTCCT-------------------AGAGTAAATTGAAT--------TGAAACTCAAACCTAATGAGAAATCTCCATGACAAAAATGACTTTT----------------------------------AATGTATCCTTTATATGTAA------ACATAACAAAAGAAA------------TCTATCATCAGGAAGGAGTTTACTCATTTATTTAAAAACATAGAGAAC--ACCTACCAGGAGACAGGTAGATATG-------CCCTGATATGTTTAAAA-CCTAGTGAGGg i canFam3.chr1 C 0 I 161 a score=144569.000000 s hg38.chr9_GL383541v1_alt 70665 46 + 171286 ATGTGGACAAGTAGTCAGACAAATAAAAATTAAAGTTATAA------------TGCTG s panTro4.chr9 68636337 46 + 137840987 ATGTGGACAAGTAGTCAGACAAATAAAAATTAAAGTTATAA------------TGCTG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64790525 46 + 135191526 ATATGGACAAGTAGTCAGACAAATAAAAATTAAAGTTATAA------------TGCTG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57828373 46 - 122973662 ATACGGACAAGTAGTCAGACAAATAAAAATTAAAGTTATAA------------TGCTG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79761472 46 + 112192347 ATATGGACAAGTAGTCAGACAAATAAAAATTAAAGTTATAA------------TGCTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80841743 46 + 112612857 ATATGGACAAGTAGTCAGACAAATAAAAATTAAAGTTATAA------------TGCTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76890817 46 + 107442819 ATATGGACAAGTAgtcagacaaataaaaattaaagttataa------------tGCTG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81154233 46 + 108555830 ATATGCACAAGTAGTCAGACAAATAAAAATTAAAGTTATAA------------TGCTG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111383316 55 - 210400635 ---CTGACAAGTAGTCAGACAAATAAAAATTAAAGTAACAAAAAAAATTTAGTTACTG i calJac3.chr1 C 0 C 0 s mm10.chr19 38043855 41 - 61431566 TGGTAGACAAGGAACTAGCCAAATATAAATTAA---TATAA------------TG--G i mm10.chr19 C 0 C 0 e canFam3.chr1 35279636 161 - 122678785 I a score=604306.000000 s hg38.chr9_GL383541v1_alt 70711 168 + 171286 ATATTAA---AAGAAGACTT---------AAAAAAGACATCT--AACCATGTTTGGAGGTAGAGATTAGCAAAGGCTGCCTGAAAAAAGCAGTATCTAAAcaggtccaccatgtacagttgtataggttgcacactgcacaattttaCATGGTAGATATGTTAGGCTAAGACCATAATGAAG s panTro4.chr9 68636383 168 + 137840987 ATATTAA---AAGAAGACTT---------AAAAAAGACATCT--AACCATGTTTGGAGGTAGAGATTAGCAAAGGCTGCCTGAAAAAAGCAGTATCTAAAcaggtccaccatgtacagttgtataggttgcacactgcacaattttaCATGGTAGATATGTTAGGCTAAGACCATAATGAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64790571 168 + 135191526 ATATTAA---AAGAAGACTT---------AAAAAAGACATCT--AAGCATGTTTGGAGGTAGAGATTAGCAAAGGCTGCCTGAAAAAAGCAGTATCTAAAcaggtccaccatgtacagttgtataggttgcacagtgcacaattttaCACGGTAAATATGTTAGGCTAAGACCATAATGAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57828419 165 - 122973662 ATACTAA---AAGAAGACTT---------AAAAAAGACATCT--AACCATGTTTGGTGATAGA---TAGCAAAGGCTGCCTGAAAAAAGCAGTATCTAAAcaggtccactatgtacagttgtataggttgcacactgcataattttaCACGGTAGATATGTTAAGCTAAGACCATAATGAAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79761518 173 + 112192347 ATACTAA---AAGAAGACTT----AAAACAAAAAAGACATCT--AACCATGTTTGGAGGTAGAGAGTAGCAAAGGCTGCCTGGAAAAAGCAGTATCTAAAcaggtccaccatgtacagttgtataggttgcacactgcacaattttaCATGATAGATATGTTAAGCTAAGACCATAATGAAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80841789 173 + 112612857 ATACTAA---AAGAAGACTT----AAAAAAAAAAAGACATCT--AACCATGTTTGGAGGTAGAGAGTAGCAAAGGCTGCCTGGAAAAAGCAGTATCTAAAcaggtccaccatgtacagttgtataggttgcacactgcacaattttaCATGTTAGATATGTTAAGCTAAGACCATAATGAAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76890863 177 + 107442819 ATACTaa---aagaagacttaaaaaaaaaaaaaaagacatct--aacCATGTTTGGAGGTAGAGAGTAGCAAAGGCTGCCTGGAAAAAGCAGTATCTAAACAGGTCCACCATGTACAGTTGTATAGGTTGCACACTGCACAATTTTACATGGTAGCTATGTTAAGCTAAGACCATAATAAAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81154279 174 + 108555830 ATACTAA---AAGAAGACTT---AAAAAAAAAAAAGACATCT--AACCATGTTTGGAGGTAGAGATTAGCAAAGGCTGCCTGGAAAAAGCAGTATCTAAAcaggtccaccatgtacagttgtataggttgcacactgcacaattttaCATGGTAGATATGTTAAACTAAGACCATAATGAAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111383371 171 - 210400635 ATAGTAAAATAAAAAGACTT---------TAATAAGACATCT--AAACATGTTTGGGGGTAGAGATTAGCAAAGGCTGCCTGGTAAAAGTAGTATCTAAAcaggtccatcatgtacagttgtataggttgcacactgcacaattttatgtggtaGATCTGTTAAGCTAAGACCATAATAAAG i calJac3.chr1 C 0 C 0 s mm10.chr19 38043896 160 - 61431566 GTGCTAA---AAAGA-ACTT---------GGAAGACATATCC--AATAA----TGAAGGTGGAGGTTAGCAAAGACTGCCTGGGAAGGGAAGTATACAGACAAGATCATCATGCAGAGTTAGA---GTTGTACATTGTGTAGCTACCCATGATGGCTCTGTTGAGATTAGAGTTTAATGAAG i mm10.chr19 C 0 I 7 s canFam3.chr1 35279797 168 - 122678785 ataaata---aataaaaatt---------aaaaaaaaaaTTTTAAAACCTAGTGAGGAATACAGACGAGTATA--TTGTCCAGAAAAAGCAGTATCTAAAcaggatcaccacgtatagttgaccaggttgtgcactgcacatctgtaCATAGTGGTTCTCTTGAGTTAAGACCTGAGTGAAG i canFam3.chr1 I 161 C 0 a score=2387190.000000 s hg38.chr9_GL383541v1_alt 70879 718 + 171286 TATA-GAG------------tgagctaag-aaggaagtgagcagtagtggcatggaatgtaggagggaagggatatgaaagagagtatcccag-ataaaggaaacagcatgtgggaaggcct-gaagcaataaagagcctggcaccttagcttaaaggaactaaaagaaattctgtagctgccatgtaggctgcagaaaagggt---gtggttaaatatgcgagccagaacaccaaggccatgtaaattgaggacaatggggacccccttcaggtgttttaggctgggaaatgatgtgagcagattggcataacagaaataacactctggctgtagtgtggagattagattagactggggcaagact-------gaagcagatagacgtatcagaagggcattggaataatccagacaaaagatagtttttgtaagctggatcagtggaaggaacttgaaggaatggttgactttgagagaaattttcaaaattcagttattgagattgatagaatttt----g---gagggagatggaggaatcaatgaagacactaagatttcttgattgatcacta----gatagctgggggttccattctctcagattt----------gggagagtaggatttgggagaaagagaatgagtttaagtgcctatggcatgtccatgtggagatgcccaacagaaa----gatacatgagtctggaa-gtgataggggatcaggccagagtgagagacttgggaattacctctgtat s panTro4.chr9 68636551 722 + 137840987 TATA-CAG------------tgagctaag-aaggaagtgagcagtagtggcatggaatgcaggagggaagggatatgaaagagagtatccgag-ataaaggaaacagcatgtgggaaggcct-gaagcaataaagagcctggcaccttagcttaaaggaactaaaagaaattctgtagctgccatgtaggctgcagaaaagggt---gtggttaaatatgcgagccagaacaccaaggccatgtaaattgaggacaatggggacccccttcaggtgttttaggctgggaaatgatgtgagcagattggcataacagaaataacactctggctgtagtgtggagattagattagactggggcaagact-------gaagcagatagacgtatcagaagggcattggaataatccagacaaaagatagtttttgtaagctggatcagaggaaggaacttgaaggaatggttgactttgagagaaattttcaaaattcagttattgagattgatagaatttt----g---gagggagatggaggaatcaatgaagacactaagatttcttgattgatcactaactagacagctgggggttccattctctcagattt----------gggagagtaggatttgggagaaagagaatgagtttaagtgcctatggcatgtccatgtggagatgcctaacagaaa----gatacatgagtctggaa-gtgataggggatcaggccagagtgagagacttgggaattacctctgtat i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64790739 721 + 135191526 TATA-GAG------------tgagctaag-aaggaagtgagcagtagtggcatggaatgtaggagggaagggatatgaaagagagtatcctag-ataaaggaaacagcatgtgggaaggcct-gaagcaataaagagcctggcaccgtagcttaaagggactaaaagaaattctgtagctgccatgtacgctgcagaaaagggt---gtggttaaatatgcgagccagatcaccaacgccatataaattgaggacaatggggacctccttcaggtgttttaggctgggaaatgatgtgatcaggttggcataacagaaataactctctggctatagtgtggagattagattagactggggcaagact-------gaagcagatagacgtatcagaagggcattggaataatccagacaaaagatagtttatgtaagctggatcagtggagggaacttgaaggaatggttgactttgagagaaattttcaaaattcagttattgagattgatagaatttt-ggag---gagggagatggaggaatcaatgaagacactaagatttcttgattgatcacta----gatagctgggggttccattctctcagattt----------ggaagagtaggatttgggagaaagagaatgagtttaagtgcctatggcatgttcatgtggagatgcccagcagaaa----gatacatgagtctggaa-gtgataggggatcaggccagagtgagagacttgggaattacctctgtat i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57828584 721 - 122973662 TATA-GAG------------TGAGCTAAG-AAGGAAGTGAGCAGTAGTGGCATGGAATGTATgatggaagggatatgaaagagagtatcctag-ataaaggaaacagcatgtgggaaggcct-gaagcaataaagagcctggcaccttagcttaaaggaactaaaagaaagtctgtagctgccatgtaggctgcaggaaaaggt---gtggttaaatatgcgagccagaacaccaaggccatataatttgaggacaatggggacgcccttcaggtgttttaggctgggaaatgatgtggtcaggttggcataatagaaataacactctggctgtagtgtggagattagattagagtggggcaagact-------gaaacagatagacgtgtcagaagggcattggaataatccagacaaaagatagtttttgtaaactggatcagtggagggaacttgaaggaatggttgactttgagagaaattttcaaaattcagttattgagactgatagaatttt-ggag---gagggagatggaggaatcaatgaagacactaacatttcttgattgatcacta----gatagctgggggttccattcactcagattt----------ggaagagtaggatttgggagaaagagaatgagtttaagtgcctatggcatgtccatgtggagatgcccaacggaaa----gatacatgagtctggaa-atgataggggatcaggctggagtgagagacttgggaattaccTCTGTAT i nomLeu3.chr1a C 0 I 172 s rheMac3.chr15 79761691 733 + 112192347 TATA-GAGGTAAGACCATAATGAAGTAAg-aaggaagtgagcagtagtggcatggaatgtatgagggaagggatatgaaagacagtatcctag-ataaaggaaacagcatgtgggaagggct-gaaacaataaagagtctggcaccttagcttaaaggaactaaaagaaattctatagctgccatgtaggctgcaaaaaagggt---gtggttaaatatgcgagccagaacaccaaggcggtatgaattgaggacaatggggatccccttcaggtgttttaggctgggaaataatgtaatcaggttggcataatagaaatagcactctggctgcagtgtggagattagattagagtggggcaagact-------gaagcagatatacctatcagaagggcattggaataatccagacaaaagatagtttttgtaaactgtatcagtggagggaacttgaaggaatggttgactttgagagaaattttcaaaattcagttatcaagattgatagaaattt-ggag---gatggagatggaggaatcaatgaagacactaagatttcttgattgatcacta----gatagctgggggttccattcactcagattt----------ggaagagtagggtttgggagaaagagaattagtttaagtgcctgtggcatgtccatgtggagatgcccagtggaaa----gatacatgagtctggaa-gtgataggggatcaggccagagtgagagacttaggaattacctctgcat i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80841962 733 + 112612857 TATA-GAGGTAAGACCATAATGAAGTAAg-aaggaagtgagcagtagtggcatggaatgtatgagggaagggatatgaaagagagtatcctag-ataaaggaaacagcatgtgggaagggct-gaaacaataaagagtctggcaccttagcttaaaggaactaaaagaaattctatagctgccatgtaggctgcaaaaaagggt---gtggttaaatatgcgagccagaACACCAAGGCGGTATGAATtgaggataatggggatccccttcaggtgttttaggctgggaaataatgtaatcaggttggcataatagaaatagcactctggctgcagtgtggagattagattagagtggggcaagact-------gaagcagatatacctatcagaagggcattggaataatccagacaaaagatagtttttgtaaactgtatcagtggagggaacttgaaggaatggttgactttgagagaaattttcaaaattcagttatcaagattgatagaaattt-ggag---gatggagatggaggaatcaatgaagacactaagatttcttgattgatcacta----gatagctgggggttccattcactcagattt----------ggaagagtagggtttgggagaaagagaattagtttaagtgcctgtggcatgtccatgtggagatgcccagtggaaa----gatacatgagtctggaa-gtgataggggatcaggccagagtgagagacttaggaactacctctgcat i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76891040 733 + 107442819 TATA-GAGGTAAGACCATAATGAAGTAAG-AAGGAAGTGAGCAGTAGTGGCATGGAATGTATGAGGGAAGGGATACGAAAGAGAGTATCCTAG-ATAAAGGAAACAGCATGTGGGAAGGGCT-GAAGCAATAAAGAGTCTGGCACCTTAGCTTAAAGGAACTAAAAGAAATTCTATAGCTGCCATGTAGGCTGCAAAAAAGGGT---GTGGTTAAATATGCGAGCCAGAACACCAAGGCGGTATGAATTGAGGACAATGGGGATCCCCTTCAGGTGTTTTAGGCTGGGAAATAATGTAATCAGGTTGGCATAATAGAAATAGCActctggctgcagtgtggagaTTAGATTAGAGTGGGGCAAGACT-------GAAGCAGATATACCTATCAGAAGAGCATTGGAATAATCCAGACAAAAGACAGTTTTTGTAAACTGTATCAGTGGAGGGAACTTGAAGGAATGGTTGACTTTgagagaaattttcaaaattcagTTATCAAGATTGATAGAAATTT-GGAG---GATGGAGATGGAGGAATCAATGAAGACACTAAGATTTCTTGATTGATCACTA----AATAGCTGGGGGTTCCATTCACTCAGATTT----------GGAAGAGTAGGGTTTGGGAGAAAGAGAATTAGTTTAAGTGCCTGTGGCATGTCCATGTGGAGATGCCCAGTGGAAA----GATACATGAGTCTAGAA-GTAATAGGGGATCAGGCCAGAGTGAGAGACTTGGAAATTACCTCTGTAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81154453 727 + 108555830 TATA-GAGGTAAGACCATAATAAAGTAAG-AAGGAAGTGAGCAGTAGTGGCATGGAATGTATGAGGGAAGGGATATGAAAGAGAGTATCCTAGAAAAAAGGAAACAGCATGTGGGAAGGGCT-GAAGCAATAAAGAGCCTGGCACCTTAGCTTAAAGGAACTA----AAATTATGTAGCTGCCATGTAGGCTGCAGAAAAGGGT---GTGGTTAAATATGTGAGCCAGAACACCAAGGCGGTATAAATT---GACAatggggacctccttcaggtgttttaggctgggaaataatgtaatcaggttggcataatagaaatagcactctggctgtagtgtggagattagattagagtggggcaagact-------gaagcagatatacctatcagaagggcattggaataatccagacaaaagatagtttttgtaaactgtatcagtggaggaaatttgaaggaatggttgactttgagagaaattttcaaaattcagttatcaagattgatggaatttt-ggag---gatgaagatggaggaatcaatgaagacactaagatttcttgatcgatcacta----gatagctgggggttccattcactcagattt----------ggaagagtagggtttgggagaaagagaattagtttaagtgcctgtggcatgtccatgtggagatgcccagtggaaa----gatacatgagtctggaa-gtgataggggatcaggccagagtgggagacttgggaattacctctgcat i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111383542 717 - 210400635 TACA-gag------------tgagctcaa-aaggaagtgagcagtagtggtatgg-atgtatgagggaaggggtatgaaagagggtatcctag-ataaaggaaacagcatgtgggaagacct-gaagcaataaagagcctggcaccttagcttaaaggaactaaaagaaattatgtaactgccatgtaggctaca-aaaagggt---gtggttaaatatgtgagcctgaacaccaaggccatataaattgagga-aatggagaccctcctcaggtgttttaggctaggaaatgacatgatcaggttggcataatagaaataacactctggctgtagtgtggagattagattagagtggggcaagact-------gaagcacatagacctatcagaagggcattgcaataatccagacagaagatagtttttg-aaactggatcagtggagggaacttgatggaatggtcagctttgagagaaattttcaaaattaagttatcgagattgatagaatttttggag---gagggagatgaaagaatcaataaatacgctaagatttcttgattggtcacta----gatagct-ggggttccattcactcagattt----------ggaagagcaggatttgggagaaagagaatgagttaaagtgcctctggcatgtccacgtggagatgcccaacagaaa----gatatatgagactggaa-gtgataggggatcaggccagagtggtagacttgggaattatctctgtat i calJac3.chr1 C 0 C 0 s canFam3.chr1 35279965 687 - 122678785 TGTAGGAG------------TAAGCTAGGAAAGGAGGCAAGAGGTAGTAGAGTAGAATGTATGAAggatgggaggtgaaaaa--gtatcctag-gtaaaggaaataccatgtgagcaggcctggaagcaagagagaatgtgccaccttagctt-agggaactaaaagaaattctgt-gctgctgtatagactgtg-acaaggatgtggtggtcaactatgacagccagaacatcagggccGTGTAAAACAAGGGCAGTGGCGATTCTCTCAAGTATTTTTAGGCCAGAAAGTGATACA----------------------AACGTCAtagctaccatatggagatcagattcgaatgaagcaagtctccgtgcagaagcag------------ggagtctactgcaacactccaggcagaagatggtgttc-taaactggagcaggacaggagaccaggtggaatggatggcttagagtagattttaggaaattaagtcatcaagactgatagaatttt-ggagaaagagggagatggaggaaccagtgaagatgctaagatttcttgattgctcgctg----ggtagt---ggcctccagtcactcagatttcgtacctagaggaagagcaggatgtgggggaaagagaatgggttt-------------gtgtccaagaggagatgcccaccaggaagttggacacatgggtctagaaggtaatgaggcatcaggctgatgatacagattcagaagtTG--------- i canFam3.chr1 C 0 C 0 e mm10.chr19 38044056 7 - 61431566 I a score=2548.000000 s hg38.chr9_GL383541v1_alt 71597 1 + 171286 a s panTro4.chr9 68637273 1 + 137840987 a i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64791460 1 + 135191526 a i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79762424 1 + 112192347 a i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80842695 1 + 112612857 a i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76891773 1 + 107442819 A i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81155180 1 + 108555830 a i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111384259 1 - 210400635 a i calJac3.chr1 C 0 C 0 e mm10.chr19 38044056 7 - 61431566 I e canFam3.chr1 35280652 0 - 122678785 C e nomLeu3.chr1a 57829305 172 - 122973662 I a score=932438.000000 s hg38.chr9_GL383541v1_alt 71598 293 + 171286 aacgaagctggaaggcatgggaGA----AGtcagttaagtaatttggatgcctatagcagaaaaaaacta---aataa-tggtttaaattgggat------ttgttgtttttctttcctagtgaaaagtgcagacataggaagtccagactggttagaagactcaacaatatgatcaggaacccagctcctgctattttTACATCCCACTCACAGTGATAATGTCCATTTTCAGGGTTGCCTGCTAGGATGAACAACACTGTCAGTTTCCCCAGAAAACATGTCCTGTTCCCAGGACATAGGACTTT s panTro4.chr9 68637274 293 + 137840987 aacgaagctggaaggcatgggaGA----AGtcagttaagtaatttggatgcctgtagcagaaaaaaacta---aataa-tggtttaaattgggat------ttgttgtttttctttcctagtgaaaagtgcggacataggaagtccagactggttagaagactcaacaatatgatcaggaacccagctcctgctattttTAGATCCCACTCACAGTGATAATGTCCATTTTCAGGGTTGCCTGCTAGGATGAACAACACTGTCAGTTTCCCCAGAAAACATGTCCTGTTCCCAGGACGTAGGACTTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64791461 296 + 135191526 aacgaagctggaaggcataggaGA----AGtcagttaagtaatttggatgcctatagcagaaaaaaactaattaataa-tggtttaaattgggat------ttgttgtttttctttcctagtgaaaagtgcagacctaggaagtccagactggttagaagactcaacaatatgatcaggaacccagctcctgctattttTACATCCCACTCACAGTGATAATGTCCATTTTCAGGGTTGCCTGCTAGGATGAACAACCCTGTCAGTTTCCCCAGAAAACATGTCCTGTTCCCAGGACATAGGACttt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57829477 296 - 122973662 AGCAAAGCTGGAAGGCATAGGAGA----AGtcagttaagtaatttggatgcgtatagcagaaaaaaactaattaataa-tggcttaaattgggat------ttgttgtttttctttcctagtgaaaattgcagacataggaattccggactggttagaagactcaacaacatggtcaggaacccagctcctgctattttTACATCCCACTCACAGTGATAATGTCCATTTTCAGGGTTGCCTGCTAGGATGAAAAATGCTGTCAGTTTCCCCAGAAAATATGTCCTGTTCCCAGGACATAGGACTTT i nomLeu3.chr1a I 172 C 0 s rheMac3.chr15 79762425 300 + 112192347 AACAAAGCTGGAAGGCATAGGAGAAGTCAGTCAGTTAAATAAtttggatgcctatagcagaaaaaaacgaattaataa-tggtttaaattgggat------ttgttctttttctttcctagtgaaaagtgcagaaataggaactctggactggttagaagactcaacaatatgatcaggaacccagctcctgctattttTATATCCCACTCACAGTAATAATGTCCATTTTCAGGGTTGCCTGCTAGGATGAACAATGCTGTCAGTTTCCCCAGAAAACATGTCCTGTTCCCAGGACATAGGACTTA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80842696 300 + 112612857 AACAAAGCTGGAAGGCATAGGAGAAGTCAGTCAGTTAAATAATTTGGATGCCTATAGCAGAAAAAAACGAATTAATAA-TGGTTTAAATTGGGAT------TTGTTCTTTTTCTTTCCTAGTGAAAAGTGCAGAAATAGGAACTCTGGACTGGTTAGAAGACTCAACAATATGATCAGGAACCCAGCTCCTGCTATTTTTATATCCCACTCACAGTAATAATGTCCATTTTCAGGGTTGCCTGCTAGGATGAACAATGCTGTCAGTTTCCCCAGAAAACATGTCCTGTTCCCAGGACATAGGACTTA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76891774 300 + 107442819 AACAAAGCTGGAAGGCATAGGAGAAGTCAGTCAGTTAAATAATTTGGATGCCTATAGCAGAGAAAAACGAATTAATAA-TGGTTTAAATTgggat------ttgttctttttctttcctagtgAAAAGTGCAGAAATAGGAACTCTGGACTGGTTAGAAGACTCAACAATATGATCAGGAACCCAGCTCCTGCTATTTTTATATCCCACTCACAGTAATAACATCCATTTTCAGGGTTGCCTGCTAGGATGAACAATGCTGTCAGTTTCCCCAGAAAACATGTCCTGTTCCCAGGACATAggacttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81155181 300 + 108555830 AACAAAGCTGGAAGGCACAGGAGAAGTCAGTCAGTTAAATGATTTGGATGCCTATAGCAGAAAAAAACGAATTAATAA-TGGTTTAAATTGGGAT------TTGTTCTTTTTCTTTCCTAGTGAAAAGTGCAGAGATAGGAAGTCCGGACTGATTAGAAGACTCAACAATATGATCAGGAACCCAGCTCCTGCTATTTTTATATCCCACTCACAGTAATAATGTCCATTTTCAGGGTTGCCTGCTAGGATGAACAATGCCGTCAGTTTCCCCAGAAAACATGTCCTGTTCCCAGAACATAGGACTTA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111384260 300 - 210400635 aatgaagctggaaggcataagaGAAGTCAGTCACTTAGGTAATTTGGATGCCCATAGCAGAA------TAATTAATAG-TGGTTTAAATTGGGATTTTTTGTTGTTGTTGTTGTTTCCTAGTGAAAAGTGCAGAGATAGGAAGTCCAAACTGGTTTGAAGACTCAACCATGTGATCAGGAACTCAGCTCCTGCTGTTTTTACACCCTACCCACAGTGGTAGTGTCCATTTTCAGGGTTGCCTGCTAGGGTGAACAATGCTGTCAGTTTCCCTGGAAAATATATGCTGTTCTCAGAACATAGGACTTT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35280652 258 - 122678785 ---AAAGTCAGGAAGTGTG---------AATCAGGCAGGTGTTTGAAAAGCCTGTAGCAGAA----ACCACTGAATAACTGGTTTAAATTTGCAC------TTGCT-TTTCTCCATCGTAATCAAATGTGCAGAGGCAAGAAGTCCAAACTGGTTGGAAGACTCCACGTCACGGGCAGGAACCCAGGCC-----------------------CAGCACTGACCCCCATCCTCA-GGTCAACTGCtagagtggtcaactgtgtccatatgcctgggacccagggg--gttcccaggagaggggccttt i canFam3.chr1 C 0 I 69 e mm10.chr19 38044056 7 - 61431566 I a score=1091107.000000 s hg38.chr9_GL383541v1_alt 71891 391 + 171286 AAATTTAATTTAA---TTTAAG---ttt-----tttttttcttttttttgagacacaatcttgctctcttgcctgggctggactgcactggtgcaatcacagctttctgcagcctcgacctccccaggctcaggtgattctcccacctcagtctgctgagtagctgggaccacaggtgccatgcctggctaatttttctatgtactgtagagatggggttttgccatgttcctcaggctggtcttgaactcttgggcccaaacgattctcccacctcagcctcccaaagtgctgggattacagctgtgagccactgcaccAGTCtgggactttaaattttaaaactaagaaaggcccaggctaactaagatgaattcttcaccctaGTcacctcctgttctt s panTro4.chr9 68637567 390 + 137840987 AAATGTAATTTA----TTTAAA---Gtt-----tttttttcttttttttgagacacagtcttgctctcttgcctgggctggcctgcactggtgcaatcacagctttctgcagcctcgacctccccaggctcaggtgattctcccacctcagcctgctgagtagctgggaccacaggtgccatgcctggctaatttttctatgttctgtagagatggggttttgccatgttcctcaggctggtcttgaactcttgggcccaaacgattctcccacctcagcctcccaaagtgctgggattacaggtgtgagccactgcaccAGACtgggactttaaattttaaaactaagcaaggcccaggctaactaagatgaattcttcaccctaGTcacctcctgttctt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64791757 394 + 135191526 aaatttaatttaa---tttaaGtttttt-----tttttttcttttttttgagacacagtcttgctctgttgcctgggctggacttcactggtgcaatcacagctttctgcagccttgacctccccaggctcaggtgattctcccacctcagcctgctgagtacctgggaccacaggtgccatgcctggctaatttttctatgttctgtagagatggggttttgccatgttcctcaggctggtcgtgaactcttgggcccaaacgattctcccacctcagcctcccaaactgctgggattacaggcgtgagccactgcaccAGACtgggactttaaattttaaaactaagaaaggcccaggctaactaagatgaattgttcaccctaGTcacctcctgttctt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57829773 386 - 122973662 AAGTTTAA--------TTTAAG---ttt-----tttttttcttttttttgagacacagtcttgctctgttgcctgggctggactgcattggcgcaatcacagctttctgcagccttgacctccccaggctcaggtgattctctcacctcggcctgctgagtagctgggaccacaggtgccatgcctggctaatttttctattttctgtagagacggggttttgccatgttgctcaggctggtcttgaactcttgggcccaaacaattctcccacctcagcctctcagagtgctgggattatgggtgtgagccactgcaccAGACtgggactttaaattttaaaactaagaaaggcccaggctaactaagatgaattgttcaccctaGTcacctcccgttctt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79762725 398 + 112192347 AAATTTAATTTAAGGTTTtttg---tttgtttgtttgttttttgtttttgagacacagtcttgctctgtttcctgggctggactgcactggcgcagtcacagctttctgcagcttcgaacaccccaggctcaggtgattctcccacctcggcctgctgagtagctgggaccacaggtgtcatgcctggctaatttttctattttctgtagagacagggttttgccatgttgctcaggctggtcctgaactcttaggcccaaatgattctcccacctcgg-ctcccaaagtgctgggattacaggtatgagccaccgcaccAGACtgggactttaaatgttaaaactaagaaaggcccaggctaactaagatgaattgttcaccctaGTcacctcctgttctt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80842996 398 + 112612857 AAATTTAATTTAAGGTtttttg---tttgtttgtttgttttttgtttttgagacacagtcttgctctgtttcctgggctggactgcactggcgcagtcacagctttctgcagcttcgaacaccccaggctcaggtgattctcccacctcggcctgctgagtagctgggaccacaggtgccatgcctggctaatttttctattttctgtagagacagggttttgccatgttgctcaggctggtcctgaactcttaggcccaaatgattctcccacctcgg-ctcccaaagtgctgggattacaggtatgagccaccgcaccAGACtgggactttaaatgttaaaactaagaaaggcccaggctaactaagatgaattgttcaccctaGTcacctcctgttctt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76892074 398 + 107442819 aaatttaatttaagattttttg---tttgtttgtttgttttttgtttttgagacacagtcttgctctgtttcctggGCTGGACTGCACTGGCGCAGTCACAGCTTTCTGCAGCTTCgaactccccaggctcaggtgattcctCCACCTCGGCCTgctgcgtagctgggaccacaggtgccatgcctggctaatttttctattttctgtagagacagagttttgccattttgctcaggctggtcttgaactcttgggcccaaatgattctcccaccttgg-ctcccaaagtgctgggattagaggtgtgagccaccgcaccagacTGGGACTTTAAATGTTAAAACTAAGAAAGGCCCAGGCTAACTAAGATGAATTGTTCACCCTAGTCACCTCCTGTTCTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81155481 394 + 108555830 AAATTTAATTTAAGGCttt------tttgtttgtttgttttttgtttttgagacacagtcttgctctgttgcctgggctggactgcactggcgcagtcacagctttctgcagcttcgaactccccaggctc-ggtgattctcccacctcggcctgctgagtagttgggaccacaggtgccatgcctggctaatttttctattttctgtagagacagggttttaccatgttgctcaggctggtcttgaactcttgggcccaaatgattctcccacctcgg-ctcccaaagtgctgggattacaggtgtgagccaccgcacTAGACtgggactttaaatgttaaaactaagaaaggcccaggccaactaagatgaattgttcaccctaGTcacctcctgttctt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111384560 384 - 210400635 AAATttaattaa----tta------att-----aattaattaTAtttttgagatagggtcttgctctgtaggctgggctggactgcaacggcacagtcacagctttctgcggcctcaacctccccaggctcaggttattctcccacctcagcct-ctgagtagctgggattacaggtgccatgcctggctaatttgtct-ttttctgttgagacagggttttgccaggttttccatgctggttttgaactcttaggcccaaacgattctctcaatctgc-ctcccaaagtactgggattacaggggtgagccaccacaccagactggaactttgaattttaaaaccaggaaagtcccaggctagctaagatgatttgttcaccctaGTTacctcctgacctt i calJac3.chr1 C 0 C 0 e mm10.chr19 38044056 7 - 61431566 I e canFam3.chr1 35280910 69 - 122678785 I a score=3192208.000000 s hg38.chr9_GL383541v1_alt 72282 1016 + 171286 aaagtggccattgcaactccagtccatcgcatgcacacttcagacagaaagagggaggaaaggagaggacaaaagaaacctactagctgagtcagcccccccttt-gaggagctttcctgaaagccccattcaacaactttctccatctagaacttagtcactggctatc-ccaaaggcaaaggtggcacagcaatgtcattctcttggct-gggcatattgccagccccaatcaaattggggttctgtaatgaggaagcaggagagaatggatattagggaggcaattagT---TACTGCTATGGTAAGGAAGAGTCATCAAAGTAGAGAAGCTAGACCCAGACCCAATGAAATACTAACAA--GTAAGAGACTAACAAAGGT-AGAGAATACCATGGAGAAGATAGAGGAGTAGCAGATAGAAGGTAGGGGCAAAACTATTAAAGGGGGGG-ATCAAGGAATCCAGAGGAAAAGAACATTT----------CAAGATCACGATGTTGATGCTGCTGCCATGCGATTTTATAAATAAGGGCC--ACCTCTAAGGT-GAAAAATGTCACAAC-CTTCCTGTAGAAATTCCCCTTACTCCCCAAAAGCCAAA-CACCCCAGATGTGGGAGAAGTTTCTGAGTCAACTAGGAAGGAAGAAGTCGGACATGATCTGTCCCATGTGGTCTTCTCCCAGGACC-AGGCAGATATTGCTAATCAATAGTGACACTCTATTCAGGGCATCT-CCCCAGGCCTCACTGTTTTCTTCCATTTCCATCCTAAGTGGCACTAGAG--AAAAAAAAATCTT------CATCAAGATCCCTTTATTAGACATCAAGGTCTCATCCAGCTTCACCCTATTA---AGGTTCTCTGGAGGTTCTGTAGTTGTCGGCCAAGCTTTGTCTTTATTTGTGAGAGGAGCAAA-TTTTTTCTTATAAATGAATTTGAAAAGGAAGAGATTTTTCTTTTTGGAGATAAGTATTGTATAATAATGACAGATTGCGTAATGAATTTCCTGAGGCAAATGATATTGACAAGGAATACTGA s panTro4.chr9 68637957 1018 + 137840987 aaagtggccattgcaactccagtccatcgcatgcacacttcagacagaaagagggaggagaggagaggacaaaagaaacctactagctgagtcagccccctcttt-gaggagctttcctgaaagccccattcaacaactttctccatctagaacttagtcactggctacc-ccaaaggcaaaggtggcacagcaatgtcattctcttggct-gggcatattgccagccccaatcaaattggggttctgtaatgaggaagcaggagagaatggatattagggaggcaattagT---TACTGTTATGGTAAGGAAGAGTCATCAAAGTAGAGAAGCTAGACCCAGACCCAATGAAATACTAACAAAGGTAAGAGACTAACAAAGGT-AGAGAATACCATGGAGAAGATAGAGGAGTAGCAGATAGAAGGTAGGGGCCAAACTATTAAAGGGGGGGGATCAAGGAATCCAGAGGAAAAGAACATTT----------CAAGATCACGATGTTGATGCTGCTGCCATGCGATTTTATAAATAAGGGCC--ACCTCTAAGGT-GAAAAATGTCACAAC-CTTCCTGTAGAAATTCCCCTTACTCCCCAAAAGCCAAA-CACCCCAGATGTGGGAGAAGTTTCTGAGTCAACTAGGAAGGAAGAAGTCGGACATGATCTGTCCCATGTGGTCTTCTCCCAGGACC-AGGCAGATATTGCTAATCAATAGTGACACTCTATTCAGGGCGTCT-CCCCAGGCCTCACTGTTTTCTTCCATTTCCATCCTAAGTGGCATTAGAG--AAAAAAAA-TCTT------CATCAAGATCCCTTTATTAGACATCAAGGTCTCGTCCAGGTTCACCCTATTA---AGGTTCTCTGGAGGTTCTGTAGTTGTCGGCCAAGCTTTGTCTTTATTTGTGAGAGGAGCAAA-TTTTTTCTTATAAATGAATTTGAAAAGGAAGAAATTTTTCTTTTTGGAGATAAGTATTGTATAATAATGACAGATTGCGTAATGAATTTCCTGAGGCAAATGATATTGACAAGGAATACTGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64792151 1021 + 135191526 aaagtggccattgcaactctagcccatcgcatgcacacttcagacagaaagagggaggaaaggagaggacaaaagaaacctactagctgagtcagccccaccttt-gaggagctttcctgaaagccccattcaacaactttctccatctagaacttagtcactggccacc-ccaaatgcaaaggtggcacagcaatgtcattctcttggct-gggcatattgccagccccaatcaaattggagttctgtaatgaggaagcaggagagaatggatattagggaggcgattagT---TACTGCTATGGTAAGGAAGAGTCATCATAGTAGAGAAGCTAGACCCAGACCCAATGAAATACTAACAA--GTAAGAGACTGACAAAGGT-AGAGAATACCATAGAGAAGATAGAGGAGTAGCAGATAGAAGGTAGGGGCAAAACTATTAAAGGGGGGG-ATCAAGGAATCCAGAGGAAAAGAACATTT----------CAAGATCACGATGTTGATGCTGCTGCCATGCGATTTTATAAATAAGGGCC--ACCTCTAAGGT-GAAAGATGTCACAAC-CTTCCTGTAGAAATTCCCCTCACTCCCCAAAAGCCAAA-CACCCCAGATGTGGGAGAAGTTTCTGAGTCAACTAGGAAGGAAGAAGTCGGACATGATCTGTCCCATGTGGTCTTCTTCCAGGACC-AGGCAGATATTGCTAATCAATAGTGACACTCTATTCAGGGCGTCT-CCCCAGGCCTCACTGTTTTCTTCCATTTCCATCCTAAGTAGCACTAGAG--AAAAAAAAATCTTCCTTGGCATCAAGATCCCTTTATTAGACATCAAGGTCTCGTCCAGCTTCACCATATTA---AGGTTCTCTGGAGGTTCTCTAGTTGTCAGCCAAGCTTTGCCTTTATTTGTGAGAGGAGCAAA-TTTTTTCTTATAAATGAATTTGAAAAGGAAGAAATTTTTCTTTTTGGAGATAAGTATTGTATAATAATGACAGA-TGTGTAATGAATTTCCTGAGGCAAATGATATTGACAAGGAATACTGC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57830159 1019 - 122973662 aaagtggccattgcaactccagcccattgcatgcacacttcagacagaaagagggaggaagggagaggacaaaagaaacctactagctgagtcagccccatcttt-gaggagctttcttgaaagccccattcaacaactttctccatctagaacttagtcactggccatc-ccaaatgcaaaggtggtacagcaatgtcattctcttggct-gggcacattgccagccccaatcaaattggagttctgtaatgaggaagcaggagagaatggttattagggaggcaattagcag-tTATGCTATGGTAAGGAAGAGTCATCAAAGTAGAGAAGCTAGACCCAGACCCAATGAAATACTAACAA--GTAAGAGACTAACAAAGGT-AGGGAATACCATAGAGAAGATAGAGGAGTAGCAGGTAGAAGGTAGGGGCAAAACTATTAAAGGGGTGG-ATCAAGGAATCCAGAGGAAAAGAACATTT----------CAAGATCACGATGTTGATGCTGCTGCCATGCGATTTTATAAACAAGGGCC--ACCTCTAAGGT-GAAAAATGTCACAAC-CTTCCTGTAGAAATTCCCCTCACTCCCCAAAAGCCAAA-CACCCCAGATGTGGGAGAAGTTTGTGAGTCACCTAGAAAGGAAGAAGTCGGACATGATCTGCCCCATTTGGTCTTCTCCCAGGACC-AAGCAGATATTGCTAATCAATAGTGACACTCTATTCAGGGTGTCT-CCCCAGGCCTCACTGTTTTCTTCCATTTCCATCCTAAGTGGCACTAGAG--AAAAAAAAATCTTCCTTGGCATCAAGATCCCTTTATTAGACATCAAGGTCTCATCCAGCTTCACCATATTA---AGGTTCTCTGGAGGTTCTGCAGTTGTCGGCCAAGCTTTGCCTTTATTTGTGAGAGGAGCAAA-TTTTTTCTT----ATGAATTTGAAAAGGAAGAATTTTTTCTTTTTGGAGATAAGTATTGTATAATAATGACAGA-TGCATAATGAATTTCCTGAGGCAAATGATATTGACAAGGAATACTGA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79763123 1011 + 112192347 aaggtatccattgcaactcaagcccattgcatgcacacttcagacagaaagagggaggaagggagaggacaaaagaaacctaccagctgagtcagccccatcttt-gaggagctttcttgaaagccccattcaacaactttctccatctagaacttagtcactggccacc-ccaaatgcaaaggcggtacagcaatgtcattctcttggctggggcacattgccaaccccaatcaaactggagttctgttatgaagaagcaggagagaatggatattaggtaggcaattagcagttactgctaTGGTGAGGAAGAGTCATCACAGTAGAGAAGCTAGACATAGACCCAATG-AATACTAACAT--GTAAGAGACTAACAAAGGT-AGAGAATACCATGGAGAAGATAGAGGAGTAGCGGGTAGAAGGTTGGGGCAAAACTATTAAAGGCGGGG-AACAAGGAATCCAGAGGAAAAGAGCATTT----------CAAGATCATGATGTTGATGCTGCTGCCATGCGATTTTATAAA---------------TAAGGT-GAAAAATGTCACAAC-CTTCCTGTAGAAATTCTCCTCACTCCCCAAAAGCCAAA-CACCCCAGATGTGGGAGGAGTTTCTGAGTCAACTTGGAAGAAAGAAGTCGGACATGATCTGCCCCATGTGGTCTTCTCCCAGGACC-AGACAGATACTGCTAATCAATAGTGACACTCTATTCAGGGCGTCT-CCCTGGGCCTCACTGTTTTCTTCCATTTCCATCCTAAGTGGCACTAGAG--AAAAAAAAATCTTCCTTGGCATCAAGATCCCTTTATTAGACATCAAGGTTTCATCCAGCTTCACCATATTA---AGGTTCTCTGGAGGTTCTGCAGTTGTCGGCCAAGCTTGGCCTTTATTTGTGAGAGGAGCAAA-TTTTTTCTTATAAATGAATTTGAAAAGGATGAAATATTTCGTTTTGGAGATAAGCATTGTATAATAATGACAGA-TGCGTAATGAATTTCCTGAGGCAAATGATATTGACAAGGAATACTGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80843394 1012 + 112612857 aaggtatccattgcaactcaagcccattgcatgcacacttcagacagaaagagggaggaagggagaggacaaaagaaacctactagctgagtcagccccatcttt-gaggagctttcttgaaagccccattcaacaactttctccatctagaacttagtcactggccacc-ccaaatgcaaaggcggtacagcaatgtcattctcttggctggggcacattgccaaccccaatcaaactggagttctgttatgaagaagcaggagagaatggatattaggtaggcaattagcagttactgctaTGGTGAGGAAGAGTCATCACAGTAGAGAAGCTAGACATAGACCCAATG-AATACGAACAA--GTAAGAGACTAACAaaggt-agagaataccatggagaagatagaggagtagcaggtagaaggtTGGGGCAAAACTATTAAAGGCGGGG-AACAAGGAATCCAGAGGAAAAGAGCATTT----------CAAGATCATGATGTTGATGCTGCTGCCATGCGATTTTATAAA---------------TAAGGT-GAAAAATGTCACAAC-CTTCCTGTAGAAATTCTCCTCACTCCCCAAAAGCCAAA-CACCCCAGATGTGGGAGGAGTTTCTGAGTCAACTAGGAAGAAAGAAGTCGGACATGATCTGCCCCATGTGGTCTTCTCCCAGGACC-AGACAGATACTGCTAATCAATAGTGACACTCTATTCAGGGCGTCT-CCCTGGGCCTCACTGTTTTCTTCCATTTCCATCCTAAGTGGCACTAGAG-AAAAAAAAAATCTTCCTTGGCATCAAGATCCCTTTATTAGACATCAAGGTTTCATCCAGCTTCACCATATTA---AGGTTCTCTGGAGGTTCTGCAGTTGTCGGCCAAGCTTGGCCTTTATTTGTGAGAGGAGCAAA-TTTTTTCTTATAAATGAATTTGAAAAGGATGAAATATTTCGTTTTGGAGATAAGCATTGTATAATAATGACAGA-TGCGTAATGAATTTCCTGAGGCAAATGATATTGACAAGGAATACTGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76892472 1014 + 107442819 AAGGAATCCATTGCAACTCAAGCCCATTGCATGCACACTTCagacagaaagagggaggaagggagaggacaaAAGAAACCTACTAGCTGAGTCAGCCCCATCTTT-GAGGAGCTTTCTTGAAAGCCCCATTCAACAACTTTCTCCATCTAGAACTTAGTCACTGGCCACC-CCAAATGCAAAGGCGGTACAGCAATGTCATTCTCTTGGCTGGGGCACATTGCCAACCCCAATCAAATTGGAGTTCTGTAATGAAGAAGCAGGAGAGAATGGATATTAGATAGGCAATTAGCAGTTACTGCTATGGTGAGGAAGAGTCATCAGAGTAGAGAAGCTAGACACAGACCCAATGAAATACTAACGA--GTAAGAGACTAACAAAGGT-AGAGAATACCATGGAGAAGATAGAGGAGTAGCAGGTAGAAGGTTGGGGCAAAACTATTAAAGGCGGGG-AACGAGGAATCCAGAGGAAAAGAGCATTT----------CAAGATcatgatgttgatgctgctgccATGCGATTTTATAAA---------------TAAGGT-GAAAAATGTCACAAC-CTTCCTGTAGAAATTCTCCTCACTCCCCAAAAGCCAAA-CACCCCAGATGTGGGAGGAGTTTCTGAGTCAACTAGGAAGAAAGAAGTCGGACATGATCTGCCCCATGTGGTCTTctcccaggacc-agacagatatTGCTAATCAATAGTGACACTCTATTCAGGGCGTCT-CCCTGGGCCTCactgttttcttccatttccatcCTAAGTGgcactagagaaaaaaaaaaatcttccttggCATCAAGATCCCTTTATTAGACATCAAGGTTTCATCCAGCTTCACCATATTA---AGGTTCTCTGGAGGTTCTGCAGTTGTCGGCCAAGCTTGGCCTTTATTTGTGAGAGGAGcaaa-ttttttcttataaatgaatttgaaaaggaTGAAATATTTCGTTTTGGAGATAAGCATTATATAATAATGACAGA-TGTGTAATGAATTTCCTGGGGCAAATGATATTGACAAGGAATACTGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81155875 1010 + 108555830 aaggtatccattgcaactcaagcccattgcatgcacacttcagacagaaagagggaggaagggagaggacaaaagaaacctactagctgagtcagccccatcttt-gaggagctttcttgaaagccccattcaacaactttctccatctagaacttagtcactggccacc-ccaaatgcaaaggcggtacagcaatgtcattctcttggctggggcacattgccaaccccaatgaaattggagttctgtaatgaagaagcaggagagaatggatattaggtaggcaattagcagttactgctaTGGTGAGGAAGAGTCATCAGAGTAGAGGAGCTAGACACAGACCCAATGAAATACTAACAA--GTAAGAGACTAACAaaggt-agagaataccatggagaagatagaggagtagcaggtagaaggtTGGGGCAAAACTATTAAAGGCGGGG-AACAAGGAATTCAGAGGAAAAGAGCATTT----------CAAGATCACGATGTTGATGCTGTTGCCTTGTGATTTTATAAA---------------TAAGGT-GAAAAATGTCACAAC-CTTCCTGTAGAAATTCTCCTCACTCCCCAAAAGCCAAA-CACCCCAGATGTGGGAGGAGTTTCTGAGTCAACTAGGAAGAAAGAAGTCGGACATGATCTGCCCCATGTGGTCTTCTCCCAGGACC-AGACAGATATTGCTAATCAATAGTGACACTCTATTCAGGGCGTCT-CCCTGGGCCTCACTGTTTTCTTCCATTTCCATCCTAAGTGGCACTAGAG---AAAAAAAATCTTCCTTGGCATCAAGATCCCTTTATTAGACATCAAGGTTTCATCCAACTTCACCATATTA---AGGTTCTCTGGAGGTTCTGCAGTTGTCGGCCAAGCTTGGCCTTTATTTGTGAGAGGAGCAAA-TTTTTTCTTATAAATGAATTTGAAAAGGATGAAATATTTCGTTTTGGAGATAAGCATTGTATAATAATGACAGA--GCGTGATGAATTTCCTGAGGCAAATGATATTGACAAGGAATACTGA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111384944 1020 - 210400635 aaggtggccattgcaactccagcccattgcatgcacacttcagacagaaagaaagaggaagggaaaggacaaaagaaacatactagctgagtcggccccatcctt-gaggagctttcttgaaagccccatt-aacaattttctccatctagaactaagacactagccacc-ccaaatgcaaaggccgtacagcattgtcattcttgtggct-gggcacattgccagccccagtcaaaatggggttctgtaatgaggaagcaggagagaatgggttttagggaggcaattagcagttactgctaTGGTGAGAAAGAGTCATCAAAGTAGAGAAGCTGGACCCAGACCCAGTGACATACTAACAA--GGAAGAGACTAACAAAGGT-AGAGAATACCAT-GAGAAGACAGAGGAGTAGCAGGTAGAA-GCAGGAGCAAAACTATTAAAG--GGGG-ATCAAGGAATCCAGAGGAAAAGAACATTT----------CAATATCAAGATGTTGATGCTGCTCCCATGAGATTTTATAAACAGGGGCC--ACCTCTGAGGTAAAAAAATGTCACCGT-CTTTCTGTGGAAATTTCCCTCACTCCCAAAAAGCCAAACCATCCCAAATATGGGAGGAGTTTCTCAGTCAACTAGGAAGGAAGAAGTCGGATGTGATCTGCCCCATGTGGTCTTCTCCTAGGACC-AGGCAGATATTGCTAATCAATAGTGACACTTTATTCAGAGTGTCT-GCCCAGGCCTCAC--TTTTCTTCCATGTCTATCCTAAGTGGCACTAAAG--AAAAAAAAAACTTCCCTGGCATCAAGATCCCTTTACTAGACATCAAGGTCTTGTCCAGTTTCACCATATTA---AAGTTCTCTGGAGGTTCTGCAGTTGTCAGCAAAGCTCTGCCTTTATTTGTGAGAGGAGGAAATTTTTTTCTTATAAATGAATTTGAAAAGGAAGAAATTTTTCTTTTTGGAGCTAAGCATTGTATAATAATGACAGA-TACATGATGAATTTCTTGAGCCAAGTGACATTGACAAGGAATACCGA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35280979 868 - 122678785 AACGTGGCCGCTGCAACTCCAGCCCCCTGCATCCACGGCTCAGACGGGAA------------GGCAAGCCAAA--------------TGCATCAGGCCCATCTTTAAAGGAACTTCCCTGGAAACCCCATCCAGCA----TCCCTGCCTGGAACT--GTGGCCACCCACCTCTACATGCAGGGGTGGCCTGGCAGTGGCTGTCGCCTGGCT-CCGTATAGTCCCTGCCCTGATCAAGCTTGGCTGCTTCA--GAGGCAGCAGAGGAGGATGGATGTTGGGGAGCCAGTTAACAGTCCCTGCTACAGGGATAAAGACTCATCGGAGTACAGAAACCAGACCCACATCCGCTT-AATACCAACAAC-TTAAGAGACAAGCGAGGATGAGAAGATCCCAAGGAGAAATTTAAGAAG-AACAGGTGGAAGGCAGGAGCAAAACGGT--AGAGAGGGT-ATCAAGGAACCCAGAGGAAAGAAGCATTTGGCGAGTGAGGGAGGCAGGGAGGTTAATGCGGCTCCCCCATGATTTTGGGAG------CCAAACCTACAAAGT-GAAAAGTGTGACAGCACTTCCTGCAGAAATTCCCCTCCCTCCCCAAAGGCCAAA-CACCCC-GACATGGGAGAGGTTGCTGAACTGCTGAG--ACGAAGCAGCGAGACCCCAGCTGCCCC-CGTGGCCTCCTCCCAGGACCAAGGCCCATGCTGGCAACTGATGGTCACACTCTGGACCATGAGTCTGCCCTGGGCCTCCCCATCGTCTTCCAGGTTCATGCGAAGTGGCGGCCGAG----GGGCTCAGCTTCCTCAGCACCC-----------------------------TCCAGCACCCCCACATCATCCAGGTTTCT--GAGGCTGTGCGGTCCGGGCCGTGGCTCTGGCTCCCCTGGTGAGAATCAGAAA-TTCTTCCTTGGAAATGGAT--------------------------------------------------ACTGG------------------------------------------------ i canFam3.chr1 I 69 C 0 e mm10.chr19 38044056 7 - 61431566 I a score=5276358.000000 s hg38.chr9_GL383541v1_alt 73298 1522 + 171286 GAACACCGAAAATTCAATTTCCACATCAGGAAGAAAGGACTTACCCCACCCATGACCCTGTGTGTTGGGATAGCTTGGAAGTTTGTACGTGGTAATTTTGTGCTGCTCTATAAATGCAGGCTTTCCTATTTCTTTAAGCAAACCTATAT--------T-----TCCCCAGTGCAAGAGCCTCTTTGCTGGTCTAGAGAAGGTTTCATTCTGGGAGGGGTTTCTTACCGCTT-GGGACCAAAATAGGATGACAGTATCTAGTTGTTCCTTTTCAATTACAGATAATTTTGCCCACCACACTTTAGAAGTGGG----ACCTGCCTATAAAGT-TGCATTGCAAATCAACCATCCTCAGTATGCTGGCTTCTGGGGAGATTTAGATGTAAGCTTATACCTCTTGGGTCTCATTCATCCTCTTATCCATGGAAACTAACCAAAAGCCAGGAGTTTCATGTACTTTCATTGAATGAAAATGAAAAATTTCTTGAATCTGTGTCA-TATTAGGGGCTTCACATGGCAAGGAGAGGGGTGAAGAGAAGCCATTCCCATAAAAAACATGCACTGAAAAGACATATG----CCTTGCGAA-ACTCCATGGGGAAACCCTTTCTAATTCAGCAGGAAGATTTGGAAGCCCGATGGACTTGTTTATGTTACATGATATGAAGTACCTTGTTGTCTGGCAACTGGGGGCCCATATA--CTTTATGGAAATGGATTGTTCATGACATGTACACAT----------------TGCAAGTTAGTAAATACTTATT-------------------AAGACATTGGACTGAAACTGTGGACTGTGCCTTGTACAAGCTGGTAACTAG--AGGTCTCTGGACCACCAGTGCTGCCCTTCTGCA-GGTGGCTCT-----------GTAACCCTTTATCTTCATGTTGCCCCACTTACCACCCTTTGGCAGGATTTACCAGTAATATTTGATAGCATCCTCTGAGCCCAAGCCTGTGGGG-TCTCTGACAGCAGTCAGTAACCAAAGTGCAGGTG-AAATAATCTTATT--TTGTATTCCTTGATTCTAAGTTGCACCATAGATTTGCTAACATCCTTT-TAGGGAGTGGGGAG-------------------------------------------------------------------------GTGC---ACTATAGATCAATTGTAAGACATGCCCTAATTTTAGAAATCTTGACATGTTTAAAAGTCTTTTAGATTTGAGGCACTGCAGTA-GAAAAATTAATCAGATTATTGTGTTATCAGTAGAAATAATATTTGTGGAGAAGCCCAAATGAAAGTCCATATAGATTTATCCATA---CCTTCAGGATCCCACTATAAGGAAAAGGAA------------------------------------------------------------GAAAAGGTTGTTTTCCTGCTGTAAGAAAATGA----TATTAT-GAAAAGATAAATTAATAAAGGAGGCAGAAAAGGAAATATTTGgagacagcctggtgcaggggaaaaggcatggactttgtgcctcagcttggtttactagctgtttccttg---aactggtgaattaatttttgtcaatctctgtttccttatttgtaaagtggcaatttctacatcataggatcatttgacaggcttaagggagaagaacatgtgtgaagaatctagtacccagagtacaacaaatgttag s panTro4.chr9 68638975 1522 + 137840987 GAACACCGAAAATTCAATTTCCACATCAGGAAGAAAGGACTTACCCCACCCATGACCCTGTGTGTTGGGATAGCTTGGAAGTTTGTACGTGGTAATTTTGTGCTGCTCTATAAATGCAGGCTTTCCTATTTCTTTAAGCAAAGCTATAT--------T-----TCCCCAGTGCAAGAGCCTCTTTGCTGGTCTAGAGAAGGTTTCATTCTAGGAGGGGTTTCTTACCGCTT-GGGACCAAAATAGGATGACAGTATCTAGTTGTTCCTTTTCAATTACAGATAATTTTGCCCACCACACTTTAGAAGTGGG----ACCTGCCTATAAAGT-TGCATTGCAAATCAACCATCCTCAGTATGCTGGCTTCTGGGGAGATTTAGATGTAAGCTTATACCTCTTGGGTCTCATTCATCCTCTTATCCATGGAAACTAACCAAAAGCCAGGAGTTTCATGTACTTTCATTGAATGAAAATGAAAAATTTCTTGAATCTGTGTCA-TATTAGGGGCTTCATATGGCAAGGAGAGGGGTGAAGAGAAGCCATTCCCATAAAAAACATGCACTGAAAAGACATATG----CCTTGCGAA-ACTCCATGGGGAAACCCTTTCTAATTCAGCAGGAAGATTTGGAAGCCCGATGGACTTGTTTATGTTACATGATATGAAGTACCTTGTTGTCTGGCAACGGGGGGCCCATACA--CTTTATGGAAATGGATTGTTCATGACATGTACACAT----------------TGCAAGTTAGTAAATACTTATT-------------------AAGACATTGGACTGAAACTATGGACTGTGCCTTGTACAAGCTGATAACTAG--AGGTCTCTGGACCACCAGTGCTACCCTTCTGCA-GGTGGCTCT-----------GTAACCCTTTATCTTCATGTTGCCCCACTTACCACCCTTTGGCAGGATTTACCAGTAATATTTGATAGCATCCTCTGAGCCCAAGCCTGTGGGG-TCTCTGACAGCAGTCAGTAACCGAAGTGCAGGTG-AAATAATCTTATT--TTGTATTCCTTGATTCTAAGTTGCACCATAGATTTGCTAACATCCTTT-TAGGGAGTGGGGAG-------------------------------------------------------------------------GTGC---ACTATAGATCAATTGTAAGACATGCCCTAATTTTAGAAATCTTGACATGTTTAAAAGTCTTTTAGATTTGAGGCACTGCAGTA-GAAAAATTAATCAGATTATTGTGTTATCAGTAGAAATAATATTTGTGGAGAAGCCCAGATGAAAGTCCATATAGATTTATCCATA---CCTTCAGGATCCCACTATAATGAAAAGGAA------------------------------------------------------------GAAAAGGTTGTTTTCCTGCTGTAAGAAAATGA----TATTAT-GAAAAGATAAATTAATAAAGGAGGCAGAAAAGGAAATATTTGgagacagcctggtgcaggggaaaaggcatggactttgtgcctcagcttggtttactagctgtttccttg---aactggtgaattaatttttgtcaatctctgttttcttatttgtaaagtggcaatttctacatcataggatcatttgacaggcttaagggagaagaacatgtgcgaagaatctagtacccagagtacaacaaatgttAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64793172 1523 + 135191526 GAACACCGAAAATTCAATTTCCACATCAGGAAGAAAGGACTTACCACACCCATGACCCTGTGTGTTGGGATAGCTTGGAAGTTTGTACATGGTAATTTTGTGCTGCTCTATAAATACAGGCTTTCCTTTTTCCTTAAGCAAAGCTGTAT--------T-----TCCCCAGTGCAAGAGCCTCTTTGCTGGTCTAGAGAAGGTTTCATTCTGGGAGGGGTTTCTTACTGCTT-GGGACCAAAATAGGATGACAGTATCTAGTTGTTCCTTTTCAATTACAGATAATTTTGCCCACCACACTTTAGAAGTGGG----ACCTGCCTATAAAGT-TGCATTGCAAATCAACCATCCTCAGTATGCTGGCTTCTGGGGAGATTTAGATGTAAGCTTATACCTCTTGAGTCTCATTCATCCTCTTATCCATAGAAACTAACCAAAAGCCAGGAGTTTCATGTACTTTCATTGAATGAAAATGAAAAATTTCTTGAATCTGTGTCA-TATTAAGAGCTTCACATGGCAAAGAGAGGGGTGAAGAGAAGCCATTCCCATAAAAAACATGCACTGAAAAGACATATG----CCTTGCGAA-ACTCCATGGGGAAACCCTTTCTAACTCAGCAGGAAGATTTGGAAGCCTGATGGACTTGTTTATGTTACATGATATGAAGTACCTTGTTGTCTGGCAACTGGGAGCCCATATA--CTTTATGGAAATGGATTGTTCATAACATGTACCCAT----------------TGCCAGTTAGTAAATACTTATT-------------------AAGACATTGGACTGAAACTGTGGACTGTGCCTCATACAAGCTGATAACTAG--AGGTCTCTGGACCACCAGTGCTACCCTTCTGCA-TGTGGCTCT-----------GTAACCCTTTATCTTCATGTTGCCCCACTTACCACCCTTTGGCAGGATTTACCAGTAATATTTGATAGCATCCTCTGAGCTCAAGCCTGCGGGG-TCTCTGACAGCAGTCAGTAACCAAAGTGCAAGTGCCAATAATCTTATT--TTGTATCCCTTGATTCTAAGTTGCACCATAGATTTGCTAACATCCTTT-TAGGGAGTGGGGAG-------------------------------------------------------------------------GTGC---ACTATAGATCAATTGTAAGACATGCCCTAATTTTAGAAATCTTGACACGTTTAAAAGTCTTTTAGATTTGAGGCACTGCAGTA-GAAAAATTAATCAGATTATTGTGTTATCAGTAGAAATAATATTTGTGGAGAAGCCCAAATGAAAGTCCATATAGATTTATCCATA---CCTTCAGGATCCCAGTATAAGGAAAAGGAA------------------------------------------------------------GAAAAGGTATTTTTCCTGCTGTAAGAAAATGA----TATTAT-GAAAAGATAAATGAATAAAGGAGGCAGAAAAGGAAATATTTGgagacagcctggtgcaggggaaaaggcacggactttgtgcctcagcttggtttactagctgtttccttg---aactggtgaattaatttttgtcaatctctgtttccttatttgtaaagtggcaatttctacatcataggatcatttgacaggcttaagggagaagaacatgtgtgaagaatctaatacccagagtacagcaaatgttAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57831178 1518 - 122973662 GAACACTGAAAATTCAATTTCCACATCAGGAAGAAAGGACTTACCCCACCCATGACCCTATGTGTTGGGATAGCTTGGAAGTTTGTACGTGGTAATTTTGTGCTGCTCTATAAATGCAGGCTTTCCTTTTTGCTTAAGCAAAGCTATAT--------T-----TCCCCAGTGCAAGAGCCTCTTTGCTGGTCTAGAGAAGGCTTCATTCTGGGAGGGGTTTCTTACCACTT-GGGACCAAAATAGGATGACAGTATCTAGTTGTTCCTTTTCAATTATAGATAATTTTGCCCACTGCACTTCAGAAGTGGG----ACCTGCCTATAAAGT-TGCATTGCAAATCAACCATCCTCAGTATGCTGGCTTCTGGGGAGATTTAGATGTAAGCTTATACCTCTTGAGTCTCATTCATCCCTTTATCCATGGAAGCTAACC-AAAGCCAGGAGTTTCATGTACTTTCATTGAATGAGAATG--AAGTTTCTTGAATCTGTGTCA-TATTGGGGGCTTCACATGGCAAGGAGAGGGGAGAAGAGAAGCCATTCCCATAAAAAACATGCACTGAAAAGACATATG----CCCTGCAAA-ACTCCATGGGGAAACCCTTTCTAATCCAGCAGGAAGATTTGGAAGCTTGAAGGACTTGTTTATATTAAACGATATGAAGTACTCTGTTGTCTGGCAACTGGGGGCCCATATA--CTTTATGGAAATGGATTGTTCATAAGATGTACACAT----------------TGCAAGTTAGTAAATACTTATT-------------------AAGACATTGGACTGAAACTGTGGACTGTGCCTTGTACAAGCTGATAATTAG--AGGTCTCTGGACCTCCAGTGCTACCCTTCTGCATGGTGGCTCT-----------GTAACCCTTTATCTTCATGTTGCCCTACTTCCCACCCTTTGGCAGGATTTACCAGTAATATTTGATAGCGTCCTCTGAGTCCAAGCCTGTGGGA-TCTCTGACAGCAGTCAATAACCAAAGTGCAGGTGCAAATAATCTTATT--TTGTATCCCTTGATTCTAAATTGCACCATAGATTTGCTAACATCCTTT-TAGGGAGTGGGGAG-------------------------------------------------------------------------GTGC---ACTATAGATCAATTGTAAGACATGCCCTAATTTTAGAAATCTTGACATGCTTAAAAGTCTTTTAGATTTGAGGCACTGCGGTA-GAAAAATTAATCAGATTATTGTGTTATCAGTAGAAATAACATTTGTGGAGAAGCCCAGATGAAAGTCCATATAGATTTATCCATA---CCTTCAGGATCCCAGTATAAGGAAAAGGAA------------------------------------------------------------GAAAAGATTGTTTTCCTGCTGTAA-AAAATGA----TATTAT-GAAAAGATAAATTAATAAAGGAGAC--AAAAGGAAATATTTGgagacagcctggtgcaggggaaaaggcatggactttgtgcctcagcttggtttactagctgtttccttg---aactggcgaattaatttttgtcaatctctgtttccttatttgtaaggtggcaattgctacatcataggatcatttgacaggcttaagggagaagaacatgtgtgaagaatctagtacccggagtacaacaaatgttAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79764134 1524 + 112192347 GAACACCGAAAATTCAATTTCCACATCAGGAAGAAAGGACTTACCCCACCCATGACCCTGTGTGTTGGGATAGCTTGGAAGTTTATACGTGGTAATTTTGTGCTGCTCTATAAATGCAGGCTTTCCTTTTTCCTTAAGCAAAGCTGTAT--------T-----TCCCCAGTGCAAGAGCCTCTTTGCTGGTCTAGAGAAGGTTTCATTCTGGGTGGGGTTTCTTACCACTT-GGGACCAAAATAAGATGACAGTATCTAGTTTTTCCTTTTCAATTATAGATCATTTTGCCCACCACACTTCAGAAGTGGG----ACCTGCCTGTAAAGT-TGCATTGTGAATCAACCATCCTTAGTATGCTGGCTTCTGGGGAGATTTAGATGGAAGCTTGTACCTCCTGAGTCTCATTCATCCTCTTATCCATGGAAACTAACCACAAGCCAGGAGTTTCATGTACTTTCATTGAATGAGAATGAAAAGTTTCTTGAATCTATGTCA-CATTAGGGGCTTCACATGGCAAGGAGAGGGGAGAAGAGAAGCCATCCCCATAAAAAACATGCACTGAAAAGAC--ATG----CCTTGCAAA-ACTCCATGTGGAAGCCCTTTCTAATCCAGCAGGAAGATTTGGAAGCTTGATGGACTTGTTTATATTAAATGATATGAAGTACCCTGTTGTCTGGCAACTGGGGGCCCATATA--CTTTATGGAAATGGATTGTTCATAAGATGTACACAT----------------TCCAAGTTAGTAAATACTTATT-------------------AAGACATTGGACTGAAACTGTGGACTGTGCCTCCTACAAGCTGATAACTAG--AGGTCTCTGGACCTCCAGTGCTACCCTTCTGCAGGGTGACTCT-----------GTAACCCTTTATCTTCATGTTGCCCCACTTCACAGCCTTTGGCAGGATTTACCAGTAATATTTGATAGCGTTCTCTGAGCCCAAGCCTGTGGGG-TCTCTGACAGCAATCAGTAACCAAAGTGCAGGTGCAAATAATCTTATT--TTGTATTCCTTGATTCTAAGTT-CACCATAGATTTGCTAACATCCTTT-TAAGGAGTGGGGAG-------------------------------------------------------------------------GTGCACTACTATAGATTAATTATAAAATATTCCCTAATTTTAGAAATCCTGACATGTTTAAAAGTCTCCTAGATTTGGGGCACTGTGGTA-GAAAAATTAATCAGATTATTGTGTTATCAGTAGAAATAATATTTGTAGAGAAGCCCAAATGAAAGTCCATATAGATTTATCCACA---CCTTCAGGATCCCAGTATAAGGAAAAGGAA------------------------------------------------------------GAAAAGGTTGTTTTCCTGCTGTAAGAAAATGA----TATTAT-GAAAAGATAAATTAATAAAGGAGACAGAAAAGGAAATATTTGgagacagcctggtgcagaggaaaaggcatggactttgtgcctcagcttggtttcctagctgtttccttg---aactggtgaattaatttttgtcagcctctgtttccttatttgtaaagtggcaatttctacatcataggatcatttgacaggtttaagagagaagaacatgtgtgaagaatctagtacccagagtacaacaaatgttac i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80844406 1524 + 112612857 GAACACCGAAAATTCAATTTCCACATCAGGAAGAAAGGACTTACCCCACCCATGACCCTGTGTGTTGGGATAGCTTGGAAGTTTATACGTGGTAATTTTGTGCTGCTCTATAAATGCAGGCTTTCCTTTTTCCTTAAGCAAAGCTGTAT--------T-----TCCCCAGTGCAAGAGCCTCTTTGCTGGTCTAGAGAAGGTTTCATTCTGGGTGGGGTTTCTTACCACTT-GGGACCAAAATAAGATGACAGTATCTAGTTTTTCCTTTTCAATTATAGATCATTTTGCCCACCACACTTCAGAAGTGGG----ACCTGCCTGTAAAGT-TGCATTGCAAATCAACCATCCTTAGTATGCTGGCTTCTGGGGAGATTTAGATGGAAGCTTGTACCTCCTGAGTCTCATTCATCCTCTTATCCATGGAAACTAACCACAAGCCAGGAGTTTCATGTACTTTCATTGAATGAGAATGAAAAGTTTCTTGAATCTATGTCA-CATTAGGGGCTTCACATGGCAAGGAGAGGGGAGAAGAGAAGCCATCCCCATAAAAAACATGCACTGAAAAGAC--ATG----CCTTGCAAA-ACTCCATGTGGAAGCCCTTTCTAATCCAGCAGGAAGATTTGGAAGCTTGATGGACTTGTTTATATTAAATGATATGAAGTACCCTGTTGTCTGGCAACTGGGGGCCCATATA--CTTTATGGAAATGGATTGTTCATAAGATGTACACAT----------------TCCAAGTTAGTAAATACTTATT-------------------AAGACATTGGACTGAAACTGTGGACTGTGCCTCCTACAAGCTGACAACTAG--AGGTCTCTGGACCTCCAGTGCTACCCTTCTGCAGGGTGACTCT-----------GTAACCCTTTATCTTCATGTTGCCCCACTTCACACCCTTTGGCAGGATTTACCAGTAATATTTGATAGCGTTCTCTGAGCCCAAGCCTGTGGGG-TCTCTGACAGCAATCAGTAACCAAAGTGCAGGTGCAAATAATCTTATT--TTGTATTCCTTGATTCTAAGTT-CACCATAGATTTGCTAACATCCTTT-TAAGGAGTGGGGAG-------------------------------------------------------------------------GTGCACTACTATAGATTAATTATAAAATATTCCCTAATTTTAGAAATCCTGACATGTTTAAAAGTCTCCTAGATTTGAGGCACTGTGGTA-GAAAAATTAATCAGATTATTGTGTTATCAGTAGAAATAATATTTGTAGAGAAGCCCAAATGAAAGTCCATATAGATTTATCCACA---CCTTCAGGATCCCAGTATAAGGAAAAGGAA------------------------------------------------------------GAAAAGGTTGTTTTCCTGCTGTAAGAAAATGA----TATTAT-GAAAAGATAAATTAATAAAGGAGACAGAAAAGGAAATATTTGgagacagcctggtgcagaggaaaaggcatggactttgtgcctcagcttggtttcctagctgtttccttg---aactggtgaattaatttttgtcagcctctgtttccttatttgtaaagtggcaatttctacatcataggatcatttgacaggtttaagagagaagaacatgtgtgaagaatctagtacCCAGAGTACAACAAATGTTAC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76893486 1521 + 107442819 GAACACCGAAAATTCAATTTCCACATCAGGAAGAAAGGACTTACCCCACCCATGACCCTGTGTGTTGGGATAGCTTGGAAGTGTATACGTGGTAATTTTGTGCTGCTCTATAAATGCAggctttcctttttccttaagCAAAGCTATAT--------T-----TCCTCAGTGCAAGAGCCTCTTTGCTGGTCTAGAGAAGGTTTCATTCTGGGTGGGGTTTCTTACCATTT-GGGACCAAAATAAGATGACAGTatctagtttttccttttcaattataGATCATTTTGCCCACTACACTTCAGAAGTGGG----ACCTGCCTATAAAGT-TGCATTTCAAATCAACCATCTTTAGTATGTTGGCTTCTGGGGAGATTTAGATGGGAACTTGTACCTCCTGAGTCTCATTCATCCTCTTATCCATGGAAACTAACCACAAGCCAGGAGTTTCATGTACTTTCATTGAATGAGAATGAAAAGTTTCTTGAATCTATGTCA-CATTAGGGGCTTCACATGgcaaggagaggggagaagagaaacCATCCCCATAAAAAACATGCACTGAAAAGAC--ATG----CCTTGCAAA-ACTCCATGGGGAAACCCTTTCTAATCCAGCAGGAAGATTTGGAAGCTTGCTGGACTTGTTTATATTAAATGATATGAAGTACCCTGTTGTCTGGCAACTGGAGGCCCATATA--CTTTATGGAAATGGATTGTTCATAAGATGTACACAT----------------TCCAAGTTAGTAAATACTTATT-------------------AAGACATTGGACTGAAACTGTGGACTGTGCCTTGTACAAGCTGATAACTAG--AGGTCTCTGGACCTCCAGTGCTACCGTTCTGCAGAGTGACTCT-----------GTAACCCTTTATCTTCATGTTGCCCCACTTCACACCCTTTGGCAGGATTTACCAGTAATATTTGATAGCGttctctgagcccaagcctgtgGGG-TCTCTGACAGCAATCAGTAACCAAAGTGTAGGTGCAAATAATCTTATT--TTGTATTCCTTGATTCTAAGTT-CACCATAGATTTGCTAACATCCTTC-TAGGGAGTGGGGAG-------------------------------------------------------------------------GTGCACTACTATAGATTAATTATAAGATATTCCCTAATTTTAGAAATCTTGACATGTTTAAAAGTCTCCTAGATTTGAGGCACTGTGGTA-GAAAAATTAATCAGATTATTGTGTTATCAGTAGAAATAATATTTGTAGAGAAGCCCAAATGAAAGTCTATGTAGATTTATCCACA---CCTTCAGGATCCCAGtataaggaaaaggaa------------------------------------------------------------gaaaaggttgTTTTCCTGCTGTAAGAAAATGA----TAttat-gaaaagataaattaataaaggagacagaaaaggaaatatttggagACAGCCTGGTGCAGAGGAAAAGGCATGGACTTTGTGCCTCAGCTTGGTTTCCTAGCTGTTTCCTTG---AACTGGTGAATTAATTTTTGTCAatctctgtttccttatttgtaaagtgGCAATTTCTACATCATAGGATCATTTGACAGGTTTAAG---GGAGAACATGTGTGAAGAATCCAGTACCCAGAGTACAACAAATGTTAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81156885 1519 + 108555830 GAACACCGAAAATTCAATTTCCACATCAGGAAGAAAGGGCTTACCCCACCCATGACCTTGTGTGTTGGGATAGCTTGGAAGTGTATACGTGGTAATTTTGTGCTGCTCTATAAATGCAGGCTTTCCTTTTTCCTTAAGCAAAGCTATAT--------T-----TCCCCAGTGCAAGAGCCTCTTTGCTGGTCTAGAGAAGGTTTCATTCTGGGTGGGGTTTCTTACCGCTT-GGGACCAAAATAAGATGACAGTATCTGGTTTTTCCTTTTCAGTTATAGATCATTTTGCCCACCACACTTCAGAAGTGGG----ACCTGCCTATAAAAT-TGCATTGCAAATCAACCATCCTTAGTATGCTGGCTTCTGGGGAGATTTAGATGGAAACTTGTACCTCCTGAGTCTCATTCATCCTCTTATCCGTGGAAACTAACCACAAGCCAGGAGTTTCATGTACTTTCATTGAATGAGAATGAAAAGTTTCTTGAATC--TGTCA-CATTAGGGGCTTCACATGGCAAGGAGAGGGGAGAAGAGAAGCCATCCCCATAAAAAACATGCACTGAAAAGAC--ATG----CCTTGCAAA-ACTCCATGGGGAAACCCTTTCTAATCCAGCAGGAAGATTTGGAAGCTTGATGGACTTGTTTATATTAAATGATATGAAGTACCCTGTTGTCTGGCAACTGGGGGCCCATATA--CTTTATGGAAATGGATTGTTCATAAGATGTACACAT----------------TGCAAGTTAGTAAATACTTATT-------------------AAGACATTGGACTGAAACTGTGGACTGTGCCTTCTACAAGCTGATAACTAG--AGGTCTCTGGACCTCCAGTGCTACCCTTCTGCAGGGTGACTCT-----------GTAACCCTTTATCTTCATGTTGCCCCACTTCATACCCTTTGGCAGGATTTACCAGTAATATTTGATAGCGTCCTCTGAGCCCAAGCCTGTGGGG-TCTCTGACAGCAATCAGTAACCAAAGTGCAGGTGCAAATAATCTTATT--TTGTATTCCTTGATTCTAAGTT-CACCATAGATTTGCTAACATCCTTT-TAGGGAGTGGGGAG-------------------------------------------------------------------------GTGTACTACTATAGATTAATTGTAAGATATTCCCTAATTTTAGAAATCTTGACATGTTTAAAAGTCTCCTAGATTTGAGGCACTGTGGTA-GAAAAATTAATCAGATTATTGTGTTATCAGTAGAAATAATATTTGTAAAGAAGCCCAAATGAAAGTCCATATAGATTTATCCATG---CCTTCAGGATTCCAGTATAAGGAAAAGGAA------------------------------------------------------------GAAAAGGTTGTTTTCCTGCTGTAAGAAAATGA----TATTAT-GAAAAGATAAATTAATAAAGGAGACAGAAAAGGAAATATTTGgaggcagcctggtgcagaggaaaagacatggactttgtgcctcagcttggtttactagctgtttccttg---aactggtgaattaatttttgtcaatctctgtttccttatttgtaaagtggcaatttctacactataggatcatttgacaggtttaag---ggagaacatgtgtgaagaatctagtacCCAGAGTACAACAAATGTCAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111385964 1519 - 210400635 GAACAC-GAAAATTCAACTTCCACGTTGGGAAG-AAGGACTTACCACACCCATGACCCTGTGTGTTGGGATAGTTTGGAAGTTTGTACATGGTAATTTTATGCTGCTCTATAAATGCAGGCTTTGCTTTTTCCTTAAGCAAAGCTATAT--------T-----TCCCCAGTGCAAGAG-ATCTTTGCTGGTCTAGAGAAGGTTTCATTCTGGGTGGAATTTCTTACCACTT-GGGACCAAAATAGGATGACAGCGTCTAGTTGTTGCTTTTCAATTACAGATCATTTTGCCCACCACACTTCAGAAGTGGG----ACCTGCCTATAAAGT-TGCACTGCAAATCAACCATTCTTAGTATGCTGGCTTCTGGGTAGATTTACATGTAAACTTATACCTATTAAGTCTCATTCATCCTCTTATCCATGGAAACTAGCCAAAAAGCAGAAGTTTCATGTACTTTCATTGAATGAGAATGAAAAGTTCCTTGAATCTGTGTCA-TATTAGGGGATTTACATGGCAAGGAGAGGGGAGAAGAGAAGCCATTCCAATCAAAAACATGCACTGAAAAGAC--ATG----CCTTGCAAA-CCTCCATGGGGAAACCCTTTCTAATCCAGCAAGATGATTTGGAAGCCTGATGGACTTGTTTATGTTAAATGATATGAAGTACCCTGTTGTTTGGCAACTAGGGGTTCATATA--CTTTATGGAAATGGGTTATTCATAAGATGTACACAT----------------TGTGAGTTAGTAAATACTTACTTGGTAAATA----CTTACCAAGACATTGGACTGAAACTATGGACTGTGCCTTATACAAGGTGATAACTAG--AGGTCT-------GCCAGTGCTACCCTTCTGCAGGGTGGCTCT-----------GTAACCCTTTATCTTCACATTGCCCCATTTCCCATGCTTAGGCAGGATTTACTGGTAATATTTGCTAGGGTCCTCTGAGCCCAAGCCTGTGGGTCTCTCTGACAGCAGTAAGTAACCTAAGTGCAGTTGCAATTAATCTTATT--TTGTGTCCCTTGATTCTAAGTTCTACCACAAATTTGCTAACATCTTTT-TAGGGAGTGGGGAG-------------------------------------------------------------------------GCGCACTACTGTAGATCAATTGTAAGACATGCACTGATTTTAGAAATCTTGATACGTTTAAAAGTCTTCTAGATTTGAGACACTGTGGTA-AAAAAATTAATCGGATTATTGTGTTATCAGTAGAAATAATATTTATAAAGAAGCCCAAACAAACATCCACATAAATTTATCCACA---CCTTCAGATTCCCAGTGTAAGGAAAAGGAA------------------------------------------------------------GAGAAGGTGGTTTTCCTGCTGTAAGCAAATGA----TACTATGGAAAAGGTAAATTAGTAAAGGAGACAGAAAAGGAAATACTtggagataatctggtggaggggaaaagatctggactc--tgcctcagcttggtttactagctgtttccttg---aaccaatgaattaatttttg-----------tttcttatttgtaaaatggcaattcctacatcataagatcatttgacagacttaagagagaagaacatgtgtcaagaatctagtactcagagtacaacaaatgttac i calJac3.chr1 C 0 C 0 s mm10.chr19 38044063 1501 - 61431566 GGACACTGCAAGTCC-GTTTCTATAC---AGAGAACGGATACACCCTGCCC-TAGCCCCGTGAGTTGTGCTCAAAGGGAAATGTGTACATGGTAATTTTGTTTTGCTCTTTAAATGCAGGTTCCCCTTTTTCCTGCTTTAAAACAGTAT--------TTGAAGTTTCCCACATGAGAG-CACTTTGCCATGCTAGA-----TTTTATTCCAGAAGGAGTTTCTTAGCAATG-AGGATCCAAATAGAGCTGCAAAAT-TGTTCGCTCTTTCTCAATTATAGACCGTTTTTCCCATTACACTTTAGAAGTGGG------TTGCCTATAAAGGAGGCAGTTTAAAGCAA-CACCCTCAGAACATCGCTTTCTCTGGACAGTTGGGTCTAAGTTAATACCTCCTAACTCTTATTC-------TCTACACAAAAATAAATCTAGAGCCAAGGGTTTCATGTACTTTCACTGATTCAGAAAGAGAAGTCTCTGGGACGTGTATCATTACTAGGGACCTCAGATGGCAGCAATA---AAACAGAGGAGCCATTACCATTGAAAACAT--ACTGGGAAGGGTTGTGAAGCCATCATGAACACCCGGTCGAGTGACCCTTAC-GGTCCAACAGG--GATGGGTAAGCCT-----ACTGATTTTTATCAGCTAGTGTGTAGCACTGTATTGTCCAGACACTAACAACCCATAAATCCTTTGTGAAAATGAATTACACTAAAGTTTTACCC----------------------------TGAGGGCTTCTC------------------------------CTTGGGGTCTGGGCTGTG---------------TAGATAGATAGGTTTATG--------------------TGTAGAGTGACTCT-----------GTAAACCTTAAGGTCCTTGCTACCATAT--------CTCGAGGACTATTTAT--------TTTGGTGTGGTCTTCAGAACCAGA-------GGG-TCTCTGA----------TAATCAGAATCTAGCCCGAAATA---TGATTGGTTGTATCCAGTGAATCCA-----------TGACTTGTCAGCATCTTTC-CAGTGTGAGGAGGGAAGACACTACTATACTACACTACTCTAGGTCAACTATATGGCAAACTACTGCACAGACCAACCATAAAACACAGTACACTGCTATAGATCAGCTGTAAGACATGTA--AATGTTAGTAATCTTGATGTGTTGAGAA-CCTTCAGTATTAGAGGCAATGTGCTA-AA------AATCTAGTGATTGTGTACCCAGCAGGAATGATACTAATAGAGAGGTCTCAA-AAGCTCCCACACGGAAGCATCTGCT---CCCAGTGGATGCTAATAGAAAGAAAAAGAATAAGATTTTTCTCACAACAGAAATATTTACTTCTTGCCAAGGATATAAGTCACTGTGATGAAAAATATGCTTTTCTTCTTATAGGACTATGAATATAATTGT-GAAAATATAAGATAACAAATGTGGTAGAGAAGAAAGTAGGTGGAGACAGCATGGTATA-AGGAAAGGACATGCACTGTGAGCCATGCCTTGTGTTTCTGGCTGTCATCTTG---AGATGATGGATTAAATTTTGTGAATCTCTGGTT-----------------------CTGCTTCATGGGATGATCTGATAGGAATAAGATGCAAGAATAAAGATGAAGAGTCTGCT-------GAATAACAAATACCAG i mm10.chr19 I 7 I 188 s canFam3.chr1 35281847 1535 - 122678785 GAAGGCTAAACAGTCCATTTCCAGAGCAGGAA--AAGCGTTCCCCTCGCCCACGGCCCTGTGTGCAGGGTTGGTCCTGAG---CCCACGTAGC-ATTTGAAGCCACTGTTTAAATGCAGGGTTTCCCTCCTCCCCAAGCAAGGCGGTCTCTGCAACCT-----TCCCTGA---------CATTCTGCTGTACCAGA---GGTTTCACTCTGGGAGGGGTTTCTTACTCTTTGGGGACCCAAATAGGACTGCACATGCCAGTCCCTTCTTCTCAATTATAGATCATTTCAGCCATTACATTTCAGAAGGGGGTCCCACCGGCATATAAAGT-CACACGACAAATCAGCCCTCCTCAGTGCATTGGCTCGTGGTGGGATTTAGATTTAAGTGCATACCTTTCAGAGCTCATTTGTCTCTTTGTGCAT-GAAGCTAACTAAAAATCAGGGGTTTGGAGCAATTCTCTTGACTGGGAGTGAAAAGTCTCTTGGAATTCCGTCATCATTGGGGACCTCGTATGGCAAGGAGAGGGTAGAAGAGAAGCCATTCCCATCAAAAATGTTTACTGAGAAGAGATGTG----CCTTGTGAA-ATTCTGTAGAGGGACCC--------------GGGGAGGTTGGAAGTCTGGCAGACTTGCTTATGTTGGGTAGCACAGAG-ACCCTCCTGTCTGACTCCGAGGCGTCCA---A--TCCAGCAGAAGTCAATTACCCATAAGATGCACACACAGTGCCTCCTGCTCAATACAAATGAGTAAATACTCATTAGGTATTTAGGACACTAGTAGGACACTAAGCTGAAACTCTGGGCCGTGCCTTGTGC----------TTAT--GAATCCCTG-----CCAGTGTTGCCGTCATCCTGAGCGGTTCCTTCCCGCCCCAGCCAACTGCCATCCCCCCAGTGTTGGGCTCGGAGGACCCCAGCAGTATCTACAGGGGATAATGGCTGGGGTCCTCCAAGCCCAACATTGTGGAG-TCTCTGTCCACTGTCACTAATCCAGGTGCAGGTGCAAATG-TCTTATT--CTGCACGCGTTGATTCT------TACCTTTGGTTGGTTAACATCCTTTGTGGATGGTGGGAAG-------------------------------------------------------------------------GTGTACTACCCTAGATCACTTATAAGGCATAGCCTAATTTTATAAAGCTCTACGTGTTTAACAACCTTTTACATTCGAGGCAATATGTTAGGAAAAATTAATCTGGTTATTGTGTTATCAATATGAAGAGTATGTGTAGAAAAGCCTCTGTGGGCTTCCACGTAGAAACATCAGCAGTCCCTCCAGGATTCCACAGTAAGGGAAAGGAA------------------------------------------------------------GAAAACGTTGCTCTCGTGCTCTAAGAAGATGAATA-CATTAT-GAAAAGATAAATTAATGAA-GAGACAGACAAGGATATATTCAGAGGCAGCATGGAGCAGGCGGGAAAGCATAGACTTGGAGTCCAACCTTGGTTGACTAACTGGGACCACGGGCAGCTGCTGCATTAACCTTCGTGAA--TTTGTTTCCTCCCTTGTTGTGTAGAAATT-CTGCCTGACAGGACCATACATCAGGATTAAGAGGGAAGAGCACACGTCAAGAATCTCATGCCTGCAACACAACAAATGTCAA i canFam3.chr1 C 0 C 0 a score=1102050.000000 s hg38.chr9_GL383541v1_alt 74820 355 + 171286 tcatttttGAATC-----------------------------------TTTGTTTCTTACCAGATGACTTGAGCTGAAGTCTTAAAAGTTATGTTCA---TCATTTTATTAAAATTATGATTAATATAATTAGC--------------------------------------------------------------GATTTATT--------------------------------------------------------------------------------------AAACAACACA------------------AAATAATAG------------TAAAATTGGAAACTTCAAACAGAAGATGAGAATACTTTATGTGAGTCATAAATATTTGTGATTTTTTTCTTACATAGTTTCAGATCAGACCATTCT-CTGCCAGAAGTAATCAGTAGATTTATAAATCATTGTGAATCTGATTAATTGAG--AAAAAAACTCAGATATTAATAGTCCCAAAGATTAA--A---AAATCATTTTA-CATTTAAGGAGTGCTATATTA-TTTATTTTCTAATAA s panTro4.chr9 68640497 355 + 137840987 TCGTTTTTGAATC-----------------------------------TTTGTTTCTTACCAGATGACTTGAGCTGAAGTCTTAAAAGTTATGTTCA---TCattttattaaaattatgatttatataattaGC--------------------------------------------------------------GATTTATT--------------------------------------------------------------------------------------AAACAACACA------------------AAATAATAG------------TAAAATTGGAAACTTCAAACAGAAGATGAGAATACTTTATGTGAGTCATAAATATTTGTGATTTTTTTCTTACATAGTTTCAGATCAGACCATTCT-CTGCCAGAAGTAATCAGTAGATTTATAAATCATTGTGAATCTGATTAATTGAG--AAAAAAACTCAGATATTAATAGTCCCAAAGATTAA--A---AAATCATTTTA-CATTTAAGGAGTGCTATATTA-TTTATTTTCTAATAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64794695 355 + 135191526 TTGTTTTTGAATC-----------------------------------TTTGTTTCTTACCAGATGACTTGAGCTGAAGTCTTAAAAGTTATGTTCA---TCattttattaaaattatgatttatataattaGT--------------------------------------------------------------GATTTATT--------------------------------------------------------------------------------------AAACAACACA------------------AAATAATAG------------TAAAATTGGAAACTTCAAACAGAAGATGAGAATACTTTATGTGAGTTATAAATATTTGTGATTTTTTTCTTACATAGTTTCAGATCAGACCATTCT-CTGCCAGAAGTAATCAGTAGATTTATAAATCATTGTGAATCTGATTGATTGAG--AAAAAAACTCAGATATTAATAGTCCCAAAGATTAA--A---AAATCATTTTA-CATTTAAGGAGTGCTATATTA-TTTATTTTCTAATAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57832696 351 - 122973662 TTGTTTTTGAATC-----------------------------------TTTGTTTCTTACCAGATGACTTGAGCTGAAGTCTTAAAAGTTATGTTCA---TCATTTTATTAAAATTATGATTTATATAATTAGT--------------------------------------------------------------G----ATT--------------------------------------------------------------------------------------AAACAACACA------------------AAATAATAG------------TAAAATTGGAAACTTCAAACGGAAGATGAGAATACTTTATGCGAGTCACAAATATTTGTGATTTTTTTCTTATATAGTTTCAGATCAGAACATTCT-CTGCCAGAAGTAATCAGTAGATTTATAAATCATTGTGAATCTGATTGATTGAG--AAAAAAACTCAGATATTAATAGTCCCAAAGATTAA--A---AAATTGTTTTA-CATTTAAGGAGTGCTATATTA-TTTATCTTCTAATAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79765658 348 + 112192347 ttgtttttGAATC-----------------------------------TTTGTTTCTTACCAGATGACTTGAGCTG--GTCTTAAAAGTTATGTTCATCTTCATTTTATTAAAATTATGATTTATATAGTTAGT--------------------------------------------------------------GATTTATT--------------------------------------------------------------------------------------AAACAACACA------------------GAATAATAG------------TAAAATTGGAAACTTCAAAC--AAGATGAGAATACTTTATGTGAGTCATAAATATTTGTGA-TTTTTTCTTACATAGTTTCAGATCAGAACATTCT-CTGCCAGAAGTAATCAGTAGATTTATAAATCATTGTTAATCTG----ATTGAG---AAAAAACTGGGATATTAATAGTCCCAAAGATTAA--A---AAATTGTTTTA-CATTTAAGGAGTGCTATATTA-TTTATTTTCTAATAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80845930 348 + 112612857 TTGTTTTTGAATC-----------------------------------TTTGTTTCTTACCAGATGACTTGAGCTG--GTCTTAAAAGTTATGTTCATCTTCATTTTATTAAAATTATGATTTATATAGTTAGT--------------------------------------------------------------GATTTATT--------------------------------------------------------------------------------------AAACAACACA------------------GAATAATAG------------TAAAATTGGAAACTTCAAAC--AAGATGAGAATACTTTATGTGAGTCATAAATATTTGTGA-TTTTTTCTTACATAGTTTCAGATCAGAACATTCT-CTGCCAGAAGTAATCAGTAGATTTATAAATCATTGTTAATCTG----ATTGAG---AAAAAACTGGGATATTAATAGTCCCAAAGATTAA--A---AAATTGTTTTA-CATTTAAGGAGTGCTATATTA-TTTATTTTCTAATAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76895007 349 + 107442819 TTGTTTTTGAATC-----------------------------------TTTGTTTCTTACCAGATGACTTGAGCTG--GTCTTAAAAGTTAtgttcatcttcattttattaaaattatgatttaCATAATTAGT--------------------------------------------------------------GATTTGTT--------------------------------------------------------------------------------------AAACAACACA------------------GAATAATAG------------TAAAATTGGAAACTTCAAAC--AAGATGAGAATACTTTATGTGAGTCAtaaatacttgtga-ttttttcTTACATAGTTTCAGATCAGAACATTCT-CTGCCAGGAGTAATCAGTAGATTTATAAATCATTGTTAATCTG----ATTGAG--aaaaaaaCTCGGATATTAATAGTCCCAAAGattaa--a---acattgtttta-catttaaggagtgctatatta-tttattttctaataa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81158404 346 + 108555830 TCGTTTTGGAATC-----------------------------------TTTGTTTCTTATCAGATGACTTGAGCTG--GTCTTAAAAGTTATGTTCATCTTCATTTTATTAAAATTATGATTTACATAATTAGT--------------------------------------------------------------GATTTATT--------------------------------------------------------------------------------------AAACA--ACA------------------GAATAATAG------------TAAAATTGGAAACTTCAAAC--AAGATGAGAATACTTTATGTGAGTCATAAATATTTGTGA-TTTTTTCTTACATAGTTTCAGATCAGAACATTCT-CTGCCAGAAGTAATCAGTAGATTTATAAATCATTGTTAATCTG----ATTGAG--AAAAAAACTCGGATATTAATAGTCCTAAAGATTAA--A---A-ATTGTTTTA-CATTTAAGGAGTGCTATATTA-TTTATTTTCAAATAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111387483 347 - 210400635 ttgttTCTGAATC-----------------------------------TTTGTTTCTTACCAGATGCCGTGAGCTGAAGTCTTAAAAGTTATGTTCATCTTCATTTTATTAAAAGTATGATTTACATAATTAGT--------------------------------------------------------------GATTTATT--------------------------------------------------------------------------------------AAACAACATA------------------GATTAATAG------------CAAAATTGGAAGCTTCAGACAGAAGATGAAAATATTTTATGTAAGTC----ATATTTCTGA-TTTTTTCTTACATATTTTCAGGTCAGAACATTAT-CTGCCAGAAATAATCAGCAGATTTATAAATCATTGTGAATCTG----ATTGAG---AAAAAACTCAGATATTAATAGTACCAAAGATTAA--A---CAAATTTTTTA--ATTTAAGGAGTGCTATATTG-TTTATTTCCTGATAA i calJac3.chr1 C 0 C 0 s mm10.chr19 38045752 541 - 61431566 ttacttctgcctccgggcagctgaggtctgccactatgctcagctGAATCTGTTTCCTAACAGATGATTTAG---GAATTCTTAAAAGTTATGCTCATTTTTCTACTATTAAAATTGTGGTTTAAAAAAATAACAGGCTGgccaggtgtggtggtgcatgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagttcgaagccagcctggtctacaaagtgagttccaggacagccaaggctatacagagaaaccctgtcttgaaaaaaacataccaaaaacaaaacaaaaaacaaacaaacaaacaaataaCAGGCTAACATTCCAGAAAATTGGGAACCTCAAAC---AGGAAAGAA-----TATGAAAATGACAGGTATTTGTGC---------TAGAGATTTTCAAAC---AATATTTT-TTGCTAGAAGTAATCAGTAGATTTATTGATGATTATGAATCTA----GTTGAG-----AAAACT-GGATACTAATATT--CAACTGTTTACTA---CAGTCCTTTTAACATTTGAAGAGTATTATTCCA-ATTATCTTCAAATAA i mm10.chr19 I 188 I 181 s canFam3.chr1 35283382 299 - 122678785 TTCCCTTTGAATC-----------------------------------CTTGTCTCTTATC-------------------CATA-----TATATTCA-------------TAAATT--------------------------------------------------------------------------------GATTTAGT--------------------------------------------------------------------------------------AAACCACAGA------------------GGATACTGC------------TAAATATGG-------AAATAGAAGGTGAGAACACTTAATGCAAACCATAGAAGTTTGTGATTTTTTTCTTAGATACTTTCAGAACAGAACATTCTCCTATCAGAGGTAATCCATAGATTTATTAATAATTGTGAGTCTG----GTTCACAAAAAAAAAAGCAGATATTCACAATCCTGAATATTTA--ATACAGATTTTTTTA-CATTTGAGAAACGCTAAACTCTTTTCTTTTCCAGCAA i canFam3.chr1 C 0 C 0 a score=1566352.000000 s hg38.chr9_GL383541v1_alt 75175 466 + 171286 CACGATCAA----CT----TTGAGAACCCC-ATACCCATTGTATTTTCTATACATTTTGAGAAATTTGACTTTTTCATTTTTTTGA-AAGTCTTTGATATGCAAAG--AAAATAACACTCCTTCAAAATGTAAGCTGATGGCTTATACATAATTGAGGATGCAGTTCCACAGAGGCATCTTCTCTCCACGATAGAAATCT-GTTCTTTGCAGAAACTTCATGAACATTTGCTGGATGCTTTGCATGTATTATTGTCCAGGCTGCTTTGATTATCTAGTAGATCCCAGAGATGACTGTCATAGCATAAAA----------------------------------------AGACATGCCCATAGCAGTAGAGCAGGCACTAGGGAGAATAGATCCAGTCACAGATACTTGGAAGATCTTCTACATAGGGGGCAGAAGTT-GGTGTCAGAAAGGTAGGGCAggccaggcgcggtggttcacgcctgtaatcccagcactttgggaggccga--ggcgggtggat- s panTro4.chr9 68640852 468 + 137840987 CACGATCAA----CT----TTGAGAACCCC-ATACCCATTGTATTTTCTATACATTTTGAGAAATTTGACTTTTTCATTTTTTTGA-AAGTCTTTGATATGCAAAGAAAAAAAAACACTCCTTCACAATGTAAGCTGATGGCTTATACATAATTGAGGATGCAGTTCCACAGAGGCATCTTCTCTCCATGATAGAAATCT-GTTCTTTGCAGAAACTTCATGAACATTTGCTGGATGCTTTGCATGTATTATTGTCCAGGCTGCTTTGATTATCTAGTAGATCCCAGAGATGACTGTCATAGCATAAAA----------------------------------------AGACATGCCCATAGCAGTAGAGCGGGCACTAGGGAGAATAGATCCAGTCACAGATACTTGGAAGATCTTCTACATAGGGGGCAGAAGTT-GGTGTCAGAAAGGTAGGGCAggccaggcgcggtggttcacgcctgtaatcccagcactttgggaggccga--ggcgggtggat- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64795050 466 + 135191526 CACGATCAA----CT----TTGAGAACCCC-ATACCCATTGTATTTTCTATACATTTTGAGAAATTTGACTTTTTCATTTTTTTGA-AAGTCTTTGATATGCAAAG--AAAATAACACTCCTTCAAAATGTAAGCTGATGGTTTATACAAAATTGAGGATGCAGTTCCACAGAGGCATCCTCTCTCCACGACAGAAATCT-GTTCTTTGCAGAAACTTCATGAACATTTGCTGGATGCTTTGCATGTATTATTGTCCAGGCTGCTTTGATTATCTAGTAGATCCCAGAGATGACTGTCATAGCATAAAA----------------------------------------AGACATGCCCATAGCAGTAGAGCAGGCACTAGGGAGAATAGATCCAGTCACAGATAGTTGGAAGATCTTCTACATAGCGGGCAGAAGTT-GGTGTCAGAAAGGTAGGGCAggccaggcgcggtggttcacgcctgtaatcccagcactttggaaggccga--ggcgggtggat- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57833047 466 - 122973662 CACGATCAA----CT----TTGAGAACCCC-ATACCCACTGTATTTTCTATACATTTTGAGAAATTTGACTTTTTCATTTTTTTGA-AAGTCTTTGATATGCAAAG--AAAATAACACTCCTTCAAAATGTAAGCTGATGGCTTATACATAATTAAGGATGCAGTTCCACAGAGGAATCCTCTCTCCATGATAGAAATCT-GTTCTTTGCAGAAACTTCATGAACATTTGCTGGATGCTTTGCATGTATTATTGTCCAGGCTGCTTTGATTATCTGGTAGATCCCAGAGATGACTGTCATAGCATAAAA----------------------------------------AGACATGCCCATAGCAGTAGAGCAGGCACTAGGGAGAAGAGATCCAGTCACAGATAGTTGGAAGATCTTCTATATAGGCGGCAGAAGTT-GGTGTCAGAAAGGTAGGGCAggccaggcgcagtggttcacgcctgtaatcccagcactttgggaggccga--ggcgggcagat- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79766006 466 + 112192347 CACAATCAA----CT----TTGAGAACCCC-GTACCCATTGTATTTTCTATACATATTGAGAAATTTGACTTTTTCACTTTTTTGA-AAGTCTCTGATATATAAAG--AAAATAACGCTCCTTCAGACTGTAAGCTGATGGCTTATACATAATGGAGGATGCAGTTCCACAGAGGCATCCTCTCTCCACGATAGAAATCT-GTTCTTTGCAGAAACTTTATGAACGTTTGCTGGATGCTTTGCATGTATTATTGTCCAGGCTGCTTTGATTATCTGGTAGATCCCAGAGACGACTGTCATAGCATAAAA----------------------------------------AGACATGCCCACAGCAGTAGAGCACGCACTAGGGAGAACAGATCCAGTTGCAGATAGTTGGAAGAACTTCTACATAGGGGGCAGCAGTT-GGTGTCAGAAAGGTAGGGCAggccgggcgtcgtggctcacgcctgtaatcccaacactttgggaggccga--ggtgggtggat- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80846278 466 + 112612857 CACAATCAA----CT----TTGAGAACCCC-GTACCCATTGTATTTTCTATACATATTGAGAAATTTGACTTTTTCACTTTTTTGA-AAGTCTCTGATATATAAAG--AAAATAACGCTCCTTCAGACTGTAAGCTGATGGCTTATACATAATGGAGGATGCAGTTCCACAGAGGCATTCTCTCTCCACGATAGAAATCT-GTTCTTTGCAGAAACTTTATGAACGTTTGCTGGATGCTTTGCATGTATTATTGTCCAGGCTGCTTTGATTATCTGGTAGATCCCAGAGACGACTGTCATAGCATAAAA----------------------------------------AGACATGCCCACAGCAGTAGAGCACGCACTAGGGAGAACAGATCCAGTTGCAGATAGTTGGAAGAACTTCTACATAGGGGGCAGCAGTT-GGTGTCAGAAAGGTAGGGCAggccgggcgtcgtggctcacgcctgtaatcccaacactttgggaggccga--ggtgggtggat- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76895356 466 + 107442819 cacAATCAA----CT----TTGAGAACCCC-ATACCCATTGTATTTTCTATACATATTGAGaaatttgacttcttcatttttttga-aagTCTCTgatatgcaaag--aaaataaagctcCTTCAGACTGTAAGCTGATGGCTTATACATAATGGAGGATGCAGTTCCACAGAGGCATCCTCTCTCCACGATAGAAATCT-GTTCTTTGCAGAAACTTTATGAACATTTGCTGGatgctttgcatatattattgTCCAGGCTGCTTTGATTATCTGGTAGATCCCAGAGACGACTGTCATAGCATAAAA----------------------------------------AGACATGCCCACAGCAGTAGAGCACGCACTAGGGAGAACAGATCCAGTTGCAGATAGTTGGAAGAACTTCTACATAGGGGGCAGCAGTT-GGTGTCAGAAAGGTAGGGCAGGCCGGGcatcatggctcacgcctgtaatcccaacactttgggaggccga--ggtgggtggat- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81158750 464 + 108555830 CACAATCAA----CT----TTGAGAACCCC-ATACCCATTGTATTTTCTATACATATTGAGAAATTTGACTTTTTCATTTTTTTGA-AAGTCTCTGATATGCAAAG--AAAATAACACTCCTTCAGACTGTAAGCTGATGGCTTATACATAATGGAGGCTGCAGTTCCACAGAGGCATCCTCTCTCCACGATAGAAATCT-GTTCTTTGCAGAAACTTTATGAACGTTTGCTGGATGCTTTGCATGTATTATTGTCCAGGCTGCTTTGATTATTTGGTAGATCCC--AGACGACTGTCATAGCATAAAA----------------------------------------AGACATGCCCATAGCAGTAGAGCACGCACTAGGGAGACTAGATCCAGTTGCAGATAGTTGGAAGAACTTCTACATAGGGGGCAGAAGTT-GATGTCAGAAAGGTAGGGCAggccaggcgtcgtggctcacgcctataattgcagcactttgggaggccga--ggtgggtggat- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111387830 464 - 210400635 CACAGTGAA----CT----TTGAGTTCCCG-ATACCCATTGTATTTACTATACATATTGAGAAATTTGACTCTTTCATGTTTTTTA-AAGTCTTTAATATGCAAAG--AAAATAACATTCCTTCAAAATGTAAGCTGATGGCTTATACATAATTGAGGATACAGTTCCACAGAGGCATCCTCTCTTCACGATAGGAATCT-GTTCTTTGCAGAAACTTTAAGAACATGTTCTAGATGCTTTGCGTGTATTATTGTCCAGGCTGCTTTGATCATCTGGTAGATCTCAGAGATGACTGTCCTAGCATAAAA----------------------------------------AGACAT--CCACAGTAGTAAAGCAGGCACTAGGGAGAATAGATCTAGCTGCAGATAGTTGGAAGATCTTCTACACAGCGGATAGAAGTT-GATGTCAGAAAGGTAGGGCAggcctggcacggtggctcactcctgtaatctcagccctttgggaggccaa--ggcgggtagtt- i calJac3.chr1 C 0 C 0 s mm10.chr19 38046474 375 - 61431566 CATGACCAG----CTATTGTTGAGAGCCCT--TACCAACTGCACTTTCCATAGATATTCAGAA-------TTTTTTTTCTTTTTGATAAGCCTTTGATAGAC-CAG--AAAATCATAATTCTTTCAAATTTAAGTTTATGGCTTATATAGAATT-AGGATACAAGTCTTTGCAAG-AGACTATCTCAACAATAGGAATCTGGTCCCTTGAAGAG-----AGGAATGCTTGCCACTTGGCTTGGATGCATTGCTCTGCAGAATACTTTGATCAGCTGGTGGCTC-CAGAGGTGACTG-CTTAATGCAG--------------------------------------------------TCACAACTG-------GGCAATGGGGTGGACAGCT-----------------------------------GGGGAGAAGTTAGGAATGAGAAAAGG----------------------------CTGTGTACCCAGTAGCAGAGAAACACCA--GCCAAATGGAT- i mm10.chr19 I 181 I 47 s canFam3.chr1 35283681 436 - 122678785 CATAGTCAATAGTTT----TTAAGAACCCCTATGCCCATTGCATTTTGTATACAT----------TTGACT--TTGAAATTTTTGA-AAATCTTTGATGTGCAAAG--AAAGCAAGACCCCTCCAAA-TGTAAGCTGATGGCTTATACATAATTGAAGATGCAATTC-GTGGAGGCATCCTCTCTCCACAATAGGCAAAA-----------AAAACCTCATAAATGTCTGCTCGGTGCTTCGCATGTATCATTGTCCGGGCTGCTCTGATCAGCTGCTAGATCCCAGAGATGATTGTTATAGCAAGGAACACAGCTGGGTGGTGGAATGGGACAGCCTGGGGGGTGCTGAGGTGTGCCCACAG-----------GCTCGAGGGAGAGTAGATACATCTGCACAT-------GGATCTCCCATGCAGTGGGCAGAAGTT-GATGTCGGAAGCGCAGGA--------------------------GTAA----------CAGGGAGAACAAGTGGCAGTTGGCAT i canFam3.chr1 C 0 C 0 a score=153602.000000 s hg38.chr9_GL383541v1_alt 75641 47 + 171286 cacctgaggtcagtagttcgagaccagcctggccaacatggtgaaac s panTro4.chr9 68641320 47 + 137840987 cacctgaggtcagtagttcgagaccagcctggccaacatggtgaaac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64795516 47 + 135191526 cacctgaggtcagtagtttgagaccagcctggccaacatggtgaaac i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57833513 47 - 122973662 cacctgaggtcagtagtttgagaccagcctggccaacatggtgaaac i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79766472 47 + 112192347 cacctgaggtcagtagtttgagaccagcctggccaacatggtgaaac i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80846744 47 + 112612857 cacctgaggtcagtagtttgagaccagcctggccaacatggtgaaac i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76895822 47 + 107442819 cacctgaggtcagtagtttgggaccagcctggccaacatggtgaaac i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81159214 47 + 108555830 cacctgaggtcagtagttcgagactagcctgtccaacatggtgaaac i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111388294 47 - 210400635 cacctgaggtcaggagttggagaccaccctggccaacatggtgaaac i calJac3.chr1 C 0 C 0 s canFam3.chr1 35284117 29 - 122678785 ---------------CGTTGAGATCCACCAGG---AGATGGTGAAAT i canFam3.chr1 C 0 C 0 e mm10.chr19 38046849 47 - 61431566 I a score=367589.000000 s hg38.chr9_GL383541v1_alt 75688 124 + 171286 ctcatctctactaaaaac-acaaaaattagctgggcgtggtgccgggtgcctgtaattccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctg s panTro4.chr9 68641367 124 + 137840987 ctcatctctactaaaaac-acaaaaattagccaggtgtggtgccgggtgcctgtaattccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64795563 124 + 135191526 ctcgtctctactaaaaat-acaaaaagtagccgggcgtggtgccgggtgcctgtaattccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57833560 124 - 122973662 ctcatctctactaaaaat-acaaaaattagttgggtgtggtgccgggtgcctgtaattccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79766519 125 + 112192347 ctcgtctctactaaaaataaaaaaaattagccaggtgtagtgatggacgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacctgggaggtggaagttgcagtgagctg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80846791 125 + 112612857 ctcgtctctactaaaaataaaaaaaattagccaggtgtagtgatggacgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacctgggaggtggaagttgcagtgagctg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76895869 125 + 107442819 ctcgtctctactaaaaataaaaaaaattagccaggtgtagtgatgggcgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacctgggaggtggaagttgcagtgagctg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81159261 124 + 108555830 ctcgtctctactaaaaat-aaaaaaattagccaggtgtagtgatgggcgcctataatcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaagcggaagttgcagtgagctg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111388341 124 - 210400635 cccgtctctactaaaaat-acaaaaattagttgggtgtggtggtgggcacctgtaatcccagatacttgggaagctgagacagcagaatcacttgaacctgggaggtggaggctgcagtgagctg i calJac3.chr1 C 0 C 0 e mm10.chr19 38046849 47 - 61431566 I e canFam3.chr1 35284146 0 - 122678785 C a score=50286.000000 s hg38.chr9_GL383541v1_alt 75812 20 + 171286 aggttacgccactgcactcc s panTro4.chr9 68641491 20 + 137840987 aggttacgccactgcactcc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64795687 20 + 135191526 aggttgcgccactgcactcc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57833684 20 - 122973662 aggttgcgccactgcactcc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79766644 20 + 112192347 agggtaccccactacactcc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80846916 20 + 112612857 aggttaccccactacactcc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76895994 20 + 107442819 aggttacCCCACTACACTcc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81159385 20 + 108555830 aggttacgccactacgctcc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111388465 20 - 210400635 aaattacacgactgcactcc i calJac3.chr1 C 0 C 0 s canFam3.chr1 35284146 12 - 122678785 GGGTTA-ACCATT------- i canFam3.chr1 C 0 C 0 e mm10.chr19 38046849 47 - 61431566 I a score=1674949.000000 s hg38.chr9_GL383541v1_alt 75832 556 + 171286 cgtctgggt----gacagagcaagactctgccaaaaagaaagagagagagagagagagagagagagagagagagagagagagagCACAAGCACAATGGGCAGCAGGTAGAACAATAGCA--ACTGGTATCAAGGAGGTCCAAAGTGAGATGACGAGGTGGGGTAACCA-----TCAGAAGAGGATGCTGATCATCTAACT----GGACataggagcactaacatttattaagaacttggctctgtgctaagtact-tacatta---tcttatttaatc----ttaaaagactacaaaat----tggtatttt-aacatcctcactttaccaaagaagaaagtgagtttcagataatataattaacttgcccaaagtgacattgtttctaagtggcgtggccaagatttgaaccaacatcaagttgatgtgatagccacattcaaccactctaccatactgTGTCCACA-----GCAGGACCTGATCCAGGGAGGCAGACAGTTAAGGCATTCAGAAAATTGAGTGGGAAGATCCTCGTTTGAGTTCAGGGACTAGAC----TTCAGCCCTGGGAAGGAAGCTGCCAAAAAGAA s panTro4.chr9 68641511 534 + 137840987 cgtctgggt----gacagagcaagactctgccaaaaagaa--------------------------aGAGAGAGAGAGAGAGAGCACAAGCACAACGGGCAGCAGGTAGAACAATAGCA--ATTGGTATCAAGGAGGTCCAAAGTGAGATGACGAGGTGGGGTAACCA-----TCAGAAGAGGATGCGGATCATCTAACT----GGACataggagcactaacatttattaagaacttggccctgtgctaagtact-tacatta---tcttatttaatcttgtttaaaagactacaaaat----cggtatttt-aacatcctcactttaccaaagaagaaagtgagtttcagataatataattaacttgcccaaagtgatattgtttctaagtggcgtggccaagatttgaaccaacatcaagttgatgtgatagccacattcaaccactctaccatactgTGTCCACA-----GCAGGACCTGATCCAGGGAGGCAGACAGTTAAGGCATTCAGAAAATTGAGTGGGAAGATCCTCACTTGAGTTCAGGGACTAGAC----TTCAGCCCTGGGAAGGAAGCTGCCAAAAAGAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64795707 548 + 135191526 cgtctgggt----gacagagcaagactctgCCAAAAagaa------------agagagagagagagagagagagagagagagagCACAAGCGCAATGGGCAGCAGGTAGAACAATAGCA--ATTGGTATGAAGGAGGTCCAATATGAGATGACGAGGTGGGGTAACCA-----TCAGAAGAGGATGCTGATCATCTAACT----GGACataggagcactaacatttattaagaacttggccctgtgctaagtact-tacatta---tcttatttaatcttgtttaaaagactacaaaat----cggtatttt-aacatcctcactttaccaaagaagaaagtgagtttcagataatagaattaacgtgcccaaagtgacattgtttctaagtggcgtggccaagatttgaaccaacatcaagctgatgtgatagccacattcaaccactctaccatactgTGTCCACA-----GCAGGACCTGATCCAGGGAGGCAGACAGTTAAGGCATTCAGAAAATTGAGTGGGAAGATCCTCGCTTGAGTTCAGGGACTAGAC----TTCAGCCCTGGGAAGGAAGCTCCCAAAAACAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57833704 533 - 122973662 cgtctgggt----gacaaagcaagactctgccaaaaagaa----------------------agaaaGAGAGAGAGAGAGAGTTTGCAAGCACAATGGGCAGCAGGTAGAACAATAGCA--ATTGGTATCAAGGCGGTCCAATATGAGATGACGAGGTGGGGTAACCG-----TCAGAAGAGGACACTGATCATCTAACT----GGACATAGGAGCAGTaacatttattaagaacttggccctgtgctaagtact-tacatta---tcttatttaatcttgtttaaaagactacaaaat----cagtatttt-aacatcctcactttaccaaagaagaaagtgggtttcagat-----aattaacttgcccaaagtgacattgtttctaagtggcgtggccaagatttgaaccaacatcaagctgatgtgatagccacactcaaccactccaccatactgtGTCCACA-----GCAGGACCTGATCCAGGGAGGCAGACAGTTAAGGCATTCGGAAAATTGAGTGGGAAGATCTTCGCTTGAGTTCAGGGACTAGAC----TTCAGCCCTGGGAAGGAAGCTGCCAAAAAGAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79766664 521 + 112192347 catctgggt----gacagagcaagactctgccaaaaagaa----------------------------agaaaaaGAGAGAGAGCGCAAGC----------GCAGGTGGAACAACAGCA--ATTGGTATCAAGGAAGGACAATATGAGATGACGAGGTGGGGTAACCA-----TCAGAAGAGGATGCTGATCATCTAACT----GGACATAGGAGCactaacatttattaaaaacttggccctgtgctaagtact-tacatta---tcttatttaatctt-tttaaaaggctacaaaat----cagtatttt-aacatcctcactttaccagtgaagaaagtgagtttcagataatataattaacttgcccaaagtgacattgtttctaagtggcatggccaagattcgaactgagatcaacctgatgtgatagccacactcaaccactccaccatactgtGTCCACA-----GCAGGACGTGATCCAGGGGGGCAAACAGTTAAGGCATTCAGAAAATTGAGTGGGAAGATCCTTGCTTGAGTTCAGGGACTAGAC----TTCAGCCCTGGGAAGGAAGCTGCCAAAAAGAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80846936 521 + 112612857 catctgggt----gacagagcaagactctgccaaaaagaa----------------------------agaaaaaGAGAGAGAGCGCAAGC----------GCAGGTGGAACAACAGCA--ATTGGTATCAAGGAAGGACAATATGAGATGACGAGGTGGGGTAACCA-----TCAGAAGAGGATGCTGATCATCTAACT----GGACATAGGAGCactaacatttattaagaacttggccctgtgctaagtact-tacatta---tcttatttaatctt-tttaaaaggctacaaaat----cagtatttt-aacatcctcactttaccagtgaagaaagtgagtttcagataatataattaacttgcccaaagtgacattgtttctaagtggcatggccaagattcgaactgagatcaacctgatgtgatagccacactcaaccactccaccatactgtGTCCACA-----GCAGGACGTGATCCAGGGGGGCAAACAGTTAAGGCATTCAGAAAATTGAGTGGGAAGATCCTTGCTTGAGTTCAGGGACTAGAC----TTCAGCCCTGGGAAGGAAGCTGCCAAAAAGAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76896014 521 + 107442819 catctgggt----gacagagcaagactctgccaaaaagaa----------------------------agaaaaagagagagagcgcaAGC----------GCAGGTGGAAGAACAGCA--ATTGGTATCAAGGAAGGACAATATGAGATGACGAGGTGGGGTAACCA-----TCAGAAGAGGATGCTGATCATCTAACT----GGACATAGGAGCACTAACATTTATTAGGAACTTGGCCCTGTGCTAAGTAct-tacatta---tcttatttaatctt-tttaaaaggcTACAAAAT----CAGTATTTT-AACATCCTCACTTTACCAGTGAAGAAAGTGAGTTTCAGATAGTAtaattaacttgcccaaagtGACATTGTTTCTAAGTGGCATGGCCAAGATTCGAACTGAGATCAACCTGATGTGATAGCCACACTCAACCACTCCACCATACTGTGTCCACA-----GCAGGACATGATCCAGGGGGGCAAACAGTTAAGGCATTCAGAAAATTGAGTGGGAAGATCCTTGCTTGAGTTCAGGGACTAGAC----TTCAGCCTTGGGAAGGAAGCTGCCAAAAAGAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81159405 519 + 108555830 cgtctgggt----gacagagcaagactctgccaaaaagaa----------------------------agaaaa--aGAGAGAGTGCAAGC----------GCAGGTGGAAGAACAGCA--ATTGGTATCAAGGAGGGACAGTATGAGATGATGAGGTGGAGTAACCA-----TCAGAAGAGGATGCTGATCATCTAACT----GGACATAGGAACactaacgtttattaagaacttggccctgtgctaagtact-tacatta---tcttatttaatctt-tttaaaaggctacaaaat----cagtatttt-aacatcctcactttagcagtgaagaaagtgagtttcagataatataattaacttgcccaaagtgacattgtttctaagtggcatggccaggatttgaaccgagatcaacctgatgtgatagccacactcaaccactccatcatactgtGTCCACA-----GCAGGACCTGATCCAGGGGGGCAGACAGTTAAGGCATTCAGAAAATTGAGTGGGAAGATCCTTGCTTGAGTTCAGGGACTAGAC----TTCAGCCCTGGGAAGGAAGCTGCCAAAAAGAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111388485 504 - 210400635 agccagggtgacagacagagcaaga--ctgcaaaaaaaaa----------------------aaaaaaaaaaaaaGGAAGGGAGGGAGGGC--AACAGGCAGCAGGTAGAAC-------------------AGGAGGTCCAGTATGAGATGACGAGGTGGGATAACCA-----TCAGAAGAGGATGCTGATCATCTAACT----GGACATAGAagcactaacatttattaagaacttg-------gctaagtact-tttgtta---ccttatttaatcttgtttaaaatgctacaaa----------atttt-aacatccccactttaccaat----aaagtgagtttcagacagtataattaacttgcctaaagtgacattgtttctaaggagtgtggccaggacttgaaccaacattaagctgatgtgacagtcacactcaaccattccaccatactgTGTCCACA-----GCAGGACCTAATCCAGGGAGGCAGACAGTTAAGGCATTCAGAAAATTGAGTAGGAAGATCTTAGCTTGAGTTCAGGAACTGGAC----TTCAGCCCTGGGAAAGAAGCTGCCAAAAAGAA i calJac3.chr1 C 0 C 0 s mm10.chr19 38046896 503 - 61431566 TGCCTGATT----AGAAGGGTAGGACACTGC---------------------------------------------------------AGC-------------GGTAGAAT-GTAGCATTGTTAGTATCCAAGAGCTCCAGCATAAGGCGAC--AGTGAGGTTGCCAGGCATCCAAAAGATCATACGGACTGGGTAACTTCTGGGAAACATAAGCACTaacatttattaggagctcgacaatatgctaattactatatgatacgctcttattgaatc---ttttaaatgctacaaaattcagtggttttttaaaaattcccatcttaccaatggagaaagtgaatctcaaatactataattaacttgcccaaaatgacagggtttctaaatggtgtggctaaagtctgagccaacgtctggctgacaagccagctccacttgaccactct---ataccATCTATTAG-----GCAGGGAAAGATCCAGAGGAAAAAAGGCATCAGGAAAGCAGGAAA--GAATAGCAACATCGTAGTCTGGATTCAGGGGCTAGACTACATACAGCCTTGAGGAGGAAGCCAACAACAACAA i mm10.chr19 I 47 I 510 s canFam3.chr1 35284158 408 - 122678785 ------------------------------------------------------------------------------AGGGAAAGCATGCTGATCAGATATCAGG--GGAAAATAaga--actaatgt------------------------------------tta-----tcaagag------ttgaccacaaccct----tggcacag-------------tgcttagagctt--------------tact-tacatta---ccttatttaatcttctttaaaactctgcaaagt----tggtatttg-cagag-------tgaccagtgaaggaagtgagtgtcagataacgtgaataactgcctcaaaatgacatgatttttaagtgctgtgattgggatttgaatcaatgtcATACAGGAACAGGAACTGC--TTAGCAACTCTGCCATG-TGCTTCTACAGGCAGGCACGACCCCATTCAGGGAGGC-GGCAG-CATGGCATTCAGGAAATCTGGTGAGAAGGCCATCACCTGAGTTCAAGGGCTGGAC----TTCAGCCCCAGGAAGGAAGTTGCCAAAAAGAA i canFam3.chr1 C 0 I 1 a score=1610723.000000 s hg38.chr9_GL383541v1_alt 76388 476 + 171286 GCAGTGTCCTTGTCTTAGATATGCAAGGCACTAAGCTCTAAACAAAAGACAGACGTAGGCATTGCTGTCAGACCTGCGTCATCAGATTTCAGCCAGAATCACATCAGGAGTAAATATGCCAGATTCCACTTGAAATGATGATTAGCCTTGGGTAAGAACCAGAGGAGCTTAGCTGTGAGGA-GGGAGACTGCTTAGCATGGCTAGCCAGGATGGGCCCAGCACTAAA-AGCACAAAGTTGTAGACTTTAACGTCAAAGGGCCAATTAAAGTGAAACGAATGAGGCCTGTTCTCATATCAGCACTGAAAACGTGCTGCTGGTCTGTTA-CCTGAACAAATATCTTCTCTGATCCATATTGG--AAAAAAGTAAGAAGGCAATATACATTTCTCTCTGTCTCTGCAATAACT-AAAAACTCCTGCCTTTGATGATGAGAACAGAAATTAGCAATTAACATGACCATTTACAAAGCATCTTTATA s panTro4.chr9 68642045 476 + 137840987 GCAGTGTCCTTGTCTTAGATATGCAAGGCACTAAGCTCTAAACAAAAGACAGACGTAGGCATTGCTGTCAGACCTGCGTCATCAGATTTCAGCCAGAATCACATCAGGAGTAAATATGCCAGATTCCACTTGAAATGATGATTAGCCTTGGGTAAGAACCAGAGGAGCTTAGCTGTGAGGA-GGGAGACTGCTTAGCATGGCTAGCCAGGATGGGCCCAGCACTAAA-AGCACAAAGTTGTAGACTTTAACATCAAAGGGCCAATTAAAGTGAAACGAATGAGGCCTGTTCTCATATCAGCACTGAAAATGTGCTGCTGGTCTGTTA-CCTGAACAAATATCTTCTCTGATCCATATTGG--AAAAAAGTAAGAAGGCAATATACATTTCTCTCTGTCTCTGCAATAACT-AAAAACTCCTGCCTTTGATGATGAGAACAGAAATTAGCAATTAACATGACCATTTACAAAGCATCTTTATA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64796255 476 + 135191526 GCAGTGTCCTTGTCTTAGATATGCAAGGCACTAAGTTCTAAACAAGAG--AGACATAGGCATTGCTGTCAGACCTCCATCATCAGATTTCAGCCAGAATCACATCAGGAGTAAATATGCCGGATTCCACTTGAAATGATGATTAGCCTTGGATAAGAACCAGAGGAGCTTAGCTGTGAGGA-GGGAGACTGTTTAGCATGGCTAGCCAGGATGGGCCCAGCACTAAA-AGGACAAAGTTGTAGACTTTAACATCAAAGGGCCAATTAAAGTGAAATGAATGAGGCCTGTTCTCATATCAGCACTGAAAATGTGCTGCTGGTCTGTTACCCTGAACAAATATCTTCTCTGATCCATATTGG--AAAAAAGTAAGAAGGCAATATACATTTCTCTCTGTCTATGCAATAACTAAAAAACTCCTGCCTTTGATGATGAGAACAGAAATTAGCAATTAACGTGACCATTTACAAAGCATCTTTATA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57834237 477 - 122973662 GCAGCATCCTTGTCTTAGATATGCAAGGCACTAAGCTCTAAACAAAAGAGAGACGTAGGCATTGCTGTCAGACCTGCATCATAAGATTTCAGCCAGAATCACATCAGGAGTAAATATGCCGGATTCCACTTGAAATGATGATTAGCCTTGGGTAAGAACCAGAGGAGCTTAGCTGTGAGGA-GGGAGACTGCTTAGCATGGCCAGGCAGGATGGGCCTAGCACTAAA-AGGACAAAGTTGTAGATTTTAACATCAAAGGGGCAATTAAAGTGAAATGAATGAGGCCTGTTCTCATATCAGCACTGAAAATGTGCTGCTGGTCTGTTA-CCTGAACAAATATCTTCTCTGATCCATACTGG--AAAAAAGTAAGAAGGCAATATACATTTCTCTCTGTCTCTGCAATAACTAAAAAACTCCTGCCTTTGATGATGAGAACAGAAATTAGCAATTAACATGACCATTTACAAAGCATTTTTATA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79767185 475 + 112192347 GCAGTGTCCTTGCCTTAGATATGCAAGACACTAAGCTCTAAACAAAAGAGAGATGTAGGCATTGCTGTCAGACCTGGGTCATAAGATTTCAGTCAGAATCACATCAGGAGTAAATATGCTGGATTCCACTTGAAATGATGATTAGCCTTGGGTAAGAACCAGAGGAGCTCAGCTGTGAGGA-GGGAGACTGCTTAGCATGGGCAGCCAGGATGGGCCTAGCACTAAA-AGGACAAAGTTGTAGATTTTAACAGCAAAGGGCCAATTAAAGTGAAATGAATGAGGCCTGTTCTCATATCAGCACTGAAAATGTGCTACTGGTCTACTA-CTTGAACAAATATCTTCTCTGATCTATATTGG--AAAAAAGTAAGAAGACAATATTCATTTCTCTCTGTCTCTGCAATAACTAAAAAACTCCTGCCTTTGATGATGAGAACAGAAATTAGCAATTAACATGACCATTTACAAAGCATCTT--TA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80847457 475 + 112612857 GCAGTGTCCTTGCCTTAGATATGCAAGACACTAAGCTCTAAACAAAAGAGAGATGTAGGCATTGCTGTCAGACCTGGGTCATAAGATTTCAGTCAGAATCACATCAGGAGTAAATATGCTGGATTCCACTTGAAATGATGATTAGCCTTGGGTAAGAACCAGAGGAGCTCAGCTGTGAGGA-GGGAGACTGCTTAGCATGGGCAGCCAGGATGGGCCTAGCACTAAA-AGGACAAAGTTGTAGATTTTAACAGCAAAGGGCCAATTAAAGTGAAATGAATGAGGCCTGTTCTCATATCAGCACTGAAAATGTGCTACTGGTCTACTA-CTTGAACAAATATCTTCTCTGATCTATATTGG--AAAAAAGTAAGAAGACAATATTCATTTCTCTCTGTCTCTGCAATAACTAAAAAACTCCTGCCTTTGATGATGAGAACAGAAATTAGCAATTAACATGACCATTTACAAAGCATCTT--TA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76896535 475 + 107442819 GCAGTGTCCTTGCCTTAGATATGCAAGACACTAAGCTCTAAACAAAAGAGAGATGTAGGCATTGCTGTCAGACCTGGGTCATAAGATTTCAGTCAGAATCACATCAGGAGTAAATATGCTGGATTCCACTTGAAATGATGATTAGCCTTGGGTAAGAACCAGAGGAGCTCAGCTGTGAGGA-GGGAGACTGCTTAGCATGGGCAGCCAGGATGGGCCTAGCACTAAA-AGGACAAAGTTGTAGATTTTAACAGCAAAGGGCCAATTAAAGTGAAATGAATGAGGCCTGTTCTCATATCAGCACTGAAAATGTGCTACTGGTCTACTA-CTTGAACAAATATCTTCTCTGATCTATATTGG--AAAAAAGTAAGAAGACAATActcatttctctctgtctctgcaaTAACTAAAAAACTCCTGCCTTTGATGATGAGAACAGAAATTAGCAATTAACATGACCATTTACAAAGCATCTT--TA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81159924 471 + 108555830 GCAGTGTCCTTGCCTTAGATATGCAAGACACTAAGCTCTAAACAAAAGAGAGATGTAGGCATTGCTGTCAGACCTGGGTCATAAGATTTCAGTCAGAATCACATCAGGAGTAAATATGCTGGATTCCACTTGAAATGATGATTAGCCTTGGTTAAGAACCAGAGGAGCTCAGCTGTGAGGA-GGGAGACTGCTTAGCATGGGCAGCCAGGATGGGCCTAGCACTAAA-AGGACAAAGTTGTAGATTTTAACATCAAAGGGCCAATTAAAGTGAAATGAATGAGGCCTGTTCTCATATCAGCACTGAAAATGTGCTACGGGTCTACTA-CTTGAACAAATATCTTCTCTGATCTATATTGG--AATA----AAGAAGACAATATTCATTTCTCTCTGTCTCTGCAATAACTAAAAAACTCCTGCCTTTGATGATGAGAACAGAAATTAGCAATTAACATGACCATTTACAAAGCATCTT--TA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111388989 475 - 210400635 GCAGTGTCGTTGTCTTATATATGCAAGGCACTAAATGCTAAACAGAAG--AGATGTAGGCATTGCTGTCAGACCTGGGTCATGAGATTTCAGCCAGAATCACATCAGGAGTAAATATGCCGGATTCTCCTTGAAATGATGATTAGCCTTGGGTAAGAACCAGAGGAGCTTATCTGTGAGGA-GGGAGACTGCTGAGTATGGTCAGCCAGGATGAGCCTGGCACTAGA-AGAACTAAGTTGTAGATTTTAACATCAAGGGGCCAATTAAAGTGAAATGAATGATGGCTGTTCTCATATCAACATTGAAAATGTGCTACTGGTCTGTGA-ACTGAGCAAATACCTTCTCTGATCCATATTGGGAAAAAAAGTAAGAAGGCAATATACGTTTCTCAC--TCCCTGGGATAACTAAAGGACTCCTGCCTTTGATGATGAGAACAGAAATTAGCCATTAACATGAGCATTTACAAGGCATCTTTATA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35284567 461 - 122678785 GCCGTGTCCTTGCATCAGACGTGTGTGGTGCTAAGAGCT-AGCAGAATAAAGACATAGGCGTCATTATCAGACCTGGGTCATGAGGTTTCATCCAGGATCCTA-CTGGAGTAAATGTGCTGAACTCCACTGTGGATGGTAAGGAATCCTGGGTGAGAGCCCAGGGGGCTTAGCTGTGAGGACGGGCAGCCACG----GCGGGCAGCCAGGAGAGGCCCAGCACTAAAGAGCACAGAGGCATACATGTCAACGTGGAAGGGTCAACTAAGGTGAATTGAGCGAAGACTGTTGTCATACCAGCATTGAAAA---------GGTCTGCTA-CCTGAACAGATATTGGCTCTGCACCATACTGG--ACAAA---AAGGAGGCAATATAAGTTTCTCCCTGTCTCTGAAACAGGTAAAGGACCCCCCCTCCTGATGATAAGAGAAATAACTAACAATTAacattacagtgtacaaagcatttttata i canFam3.chr1 I 1 C 0 e mm10.chr19 38047399 510 - 61431566 I a score=444016.000000 s hg38.chr9_GL383541v1_alt 76864 147 + 171286 TATagtcatgcactgcata---atgttttgatcaacgatgggcatatatgatggta-------gtcccataa---cataataaaactgaaaattccctatagcctagtgacgttgtgatgattctgatcctgtataggccctaggctaatgtgaatgttt s panTro4.chr9 68642521 147 + 137840987 TATagtcatgccctgcata---atgttttggtcaacgatgggcatatatgatggta-------gtcccataa---cataatgaaactgaaaattccctatagcctagtgacgttgtgatgattctgatcctgtataggccctaggctaatgtgaatgttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64796731 147 + 135191526 TATagtcatgtactgcata---atgttttggtcaacgatgggcatatatgatagtg-------gtctcataa---cataatgaaactgaaaattccctgtagcctagtgacattgtgatgattctgatcccatataggccctaggcaaatgtgaatgttt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57834714 147 - 122973662 TATagtcatgcactgtata---atgttttggtcaacgatgggcatatatgatggtg-------gtcccataa---cataatgaaactgaaaattccctatagcctagtgacattgtgatgattctgatcctgtataggccctaggctaatgtgaatgttt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79767660 150 + 112192347 TATagtcatgcactgcataatgatgttttggtcaacgatgggcatatatgatggtg-------gtcccataa---cataacaaaactgaaaattccctgtagcctagtgacactgtgatgattctgatcctgtataggccctaggctaatgtgaatgttt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80847932 150 + 112612857 TATagtcatgcactgcataatgatgttttggtcaacgatgggcatatatgatggtg-------gtcccataa---cataacaaaactgaaaattccctatagcctagtgacactgtgatgattctgatcctgtataggccctaggctaatgtgaatgttt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76897010 150 + 107442819 catagtcatgcactgcataatgatgttttggtcaacaatgggcatatatgatggtg-------gtcccataa---caTAACAAAACTGAAAATTCCCTATAGCCTAGTGACACTGTGATGATTCTGATCCTGTATAGGCCCTAGGCTaatgtgaatgttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81160395 150 + 108555830 TATagtcatgcactgcataatgatgtttcggtcaacgatgggcatatatgatggtg-------gtcccataa---cataatgaaactgaaaattccctatagcctagtgacactgtgatgattctgatcctgtataggccctaggctaatgtgaatgttt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111389464 160 - 210400635 TAcagccatgcactgcaaaatgatgttttggtcaatgatgggcatatatgatgatgaaaccatatcccataatattataatgaaactgaaaattccctgtagcttagtgacattgtgatgattctgatcttgcatagaccctaggctaatgtgtatgttt i calJac3.chr1 C 0 I 5541 e mm10.chr19 38047399 510 - 61431566 I e canFam3.chr1 35285028 0 - 122678785 C a score=43365.000000 s hg38.chr9_GL383541v1_alt 77011 14 + 171286 gtgtctttgttttt s panTro4.chr9 68642668 14 + 137840987 gtgtctttgttttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64796878 14 + 135191526 gtgtctttgttttt i ponAbe2.chr9 C 0 I 1196 s nomLeu3.chr1a 57834861 14 - 122973662 gtatctctgttttt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79767810 14 + 112192347 gtgtctttgttttt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80848082 14 + 112612857 gtgtctttgttttt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76897160 14 + 107442819 gtgtctttgttttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81160545 14 + 108555830 gtgtctttgttttt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111395165 14 - 210400635 GCAtctttgttttt i calJac3.chr1 I 5541 C 0 e mm10.chr19 38047399 510 - 61431566 I e canFam3.chr1 35285028 0 - 122678785 C a score=519088.000000 s hg38.chr9_GL383541v1_alt 77025 253 + 171286 aacaaaaagtttgaaaagt-aaaaaatgttacaatatttaaatcataaa-aaacctcattaataataaggatataaggaaagaaaatattttatacagtaccgtacagtgtgtttgtgttttaagctaacagttgttacataagagtcaaatgttaaaattttttttaatttataaagtaa--------------------aaaggttatagtaaacgaaggttaattcattattgaaaaaagaaaaatattttatataaattcagaatagccta s panTro4.chr9 68642682 251 + 137840987 aacaaaaagtttgaaaagt-aaaaaatgttacaatatttaaatcagaaa-aaacctcat--ataataaggatataaggaaagaaaatattttatacagtaccgtacagtgtgtttgtgttttaagctaacagttgttacaaaagagtcaaatgttaaaattttttttaatttataaagtaa--------------------aaaggttatagtaaacgaaggttaattcattattgaagaaagaaaaatgttttatataaattcagaatagccta i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57834875 251 - 122973662 aacaaaaagtttgaaaagt-aaaaaatgttacaatatttaaatcggaaa-aaacctcat--ataataaggatataaggaaagaaaatattttatacagtaccgtacaatgtgtttgtgttttaagccaagagttgttacaaaagagtcaaatgttaaaaatttttttaatttataaagtaa--------------------aaagtttgtagtaaatgaagattaattcattattgaagaaagaaaaatattttatataaattcagtatagccta i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79767824 245 + 112192347 aacaaaaagtttgaaaagtaaaaaaatgttaaaatatttaaatcagaaa-aaaattcat--ataataaggatataaggaaag---atattttatacagtactgtacaatgtgtttgtgttttaagctaagagttgttacacaagagtcaaatgttaaaatttttttaaatttataaagtaa--------------------aaaggttatagtaaatgaaggttaattcattattg----aagaaaaatatttcatataaattcagtatagccta i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80848096 245 + 112612857 aacaaaaagtttgaaaagtaaaaaaatgttaaaatatttaaatcagaaa-aaaattcat--ataataaggatataaggaaag---atattttatatagtactgtacaatgtgtttgtgttttaagctaagagttgttacacaagagtcaaatgttaaaatttttttaaatttataaagtaa--------------------aaaggttatagtaaatgaaggttaattcattattg----aagaaaaatatttcatataaattcagtatagccta i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76897174 245 + 107442819 aacaaaaagtttgaaaagtaaaaaaatgttaaaatatttaaatcagaaa-aaaactcaT--ATAATAAGGATATAAGGAAAG---ATATTTTATACAGtactgtacaatgtgtttgtgttttaagctaagagTTGTTACACAAGAgtcaaatgttaaatttttttttaatttataaagtaa--------------------aaaggttaTAGTAAATGAAGGTTAAttcattattg----aagaaaaatatttcatataaattcagtatagccta i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81160559 269 + 108555830 aacaaaaagtttgaaaagtaaaaaaatgttaaaatatttaaatcagaaa-aaaactcat--ataataaggatataaggaaag---atattttatacagtactgtacaatgtgtttgtgttttaagctaagagttgttacacaagagtcaaatgttaaaattttttttaatttataaagtaaattataaattacttcatagtaaatgaagtaataaatgaaggttaattcattattgaagaaagaaaaatattttataaaaattcagtatagccta i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111395179 240 - 210400635 aacaaaaagtttgaaaagt-aaaaaaagttaaaagattgaaatcagaaagaaatctcat--ataataaggacataaggaaagaaaatattttgcatagtgctgtacaatgtgtttgtcttttaagctaaga---gttacaaaagagtcaagtgttaaaacattttttaatttataaagtta----------------------------taataaat-aaggttaattcattattgaagaaagaaaaatattttctgtaaattgtgtattgccta i calJac3.chr1 C 0 C 0 e mm10.chr19 38047399 510 - 61431566 I e canFam3.chr1 35285028 0 - 122678785 C e ponAbe2.chr9 64796892 1196 + 135191526 I a score=1254792.000000 s hg38.chr9_GL383541v1_alt 77278 410 + 171286 agtatacagtgtttgtaagtctacagtagtgtacagtaatagcctagtccttcacattccctccctgctgactcactgactcacccacaccacttgcaagttagtgccctatacagatgtactatttcttatcttttatgctgtatttttactatatcttgtctatgtttaggtgtgtttagatacacaagtacttatcattgtg--tttcaattgcctacagtattcagtacagtaacatactgttacaggtttgtagcctaggagtaataggctgtctcatatagcttacatgtgtagtaggctctccatctaggttcatgaagtacactctataatacctgcataatgacaaaatcacccaatgatgatttctcagaacctatcttcatcgtttagtgatgcatgactg s panTro4.chr9 68642933 410 + 137840987 agtatacagtgtttataagtctacagtagtgtacagtaatagcctagtccttcacattccctccctgctgactcactgactcacccacaccacttgcaagttagtgccctatacagatgtactatttcttatcttttatgctgtatttttactatatcttgtctatgtttaggtgtgtttagatacacaagtacttatcattgtg--tttcaattgcctacagtattcagtacagtaacatactgttacaggtttgtagcctaggagtaataggctgtcccatatagcttacatgtgtagtaggctctccatctaggttcatgaagtacactctataatacctgcataatgacaaaatcacccagtgatgatttctcagaacctatcttcatcgtttagtgatgcatgactg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64798088 410 + 135191526 agtgtacagtgtttataagtctacagtagtgtacagtaatagcctaggccttcacattccctccctgctgacgcactgactcacccacaccacttgcaagttagtgccccatacagatgtactatttcttatcttttatgctgtatttttactatatcttgtctatgtttaggtatgtttagatacacaagtacttatcattgtg--tttcaattgcctacagtattcagtacagtaacatactgttacaggttcgtagcctaggagtaataggctgtcccatatagcctacatgtgtagtaggctctccatctaggttcatgaagtacactctataatacctgcataatgacaaaatcacccaatgatgatttctcagaacctgtcttcatcgtttagtgatgcatgactg i ponAbe2.chr9 I 1196 C 0 s nomLeu3.chr1a 57835126 410 - 122973662 aatatacagtgtttataagtctacagtagtgtacagtaatagcctaggccttcacatttcctccctgctgactcactgactcacccacaccacttgcaagttagtgccctatacagatgtactatttcttatcttttatgctgtatttttactatatcttgtctatgtttaggtatgtttagatacacaagtacttatcgttgtg--tttcaattgcctatagtattcagtacagtaacatactgttacaggtttgtagcctagaagtaataggctgtcccatatagcctacatgtgtagtaggctctccatctaggttcatgaagtacactctataatacctgcataatgacaaaatcacctaatgacgatttctcagaacctatcttcatggttcagtgatgcatgactg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79768069 409 + 112192347 agtatacagtgtttataagcctacagcagtgtacagtaatagcctaggccttcacattccctccctgctgatgcactgactcacccacaccacttgcaagttagtgccctatacagatgtaccctttcttatcttttatgctgtatttttactatatcttgtctatgtttaggtatgtttagatacacaagtacttaccattgtg--tttcagttacctacagtatgtagtacagtaacataccgttacaggtttgtagcct-ggggtaatgggttgtcccatatagcctacgtgtgtagtagactctccatctaggttcatgaagtacactctataatacctgcataatgacaaaatcacctaatgatgatttctcagaacctatcttcatcatttagtgacgcatgactg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80848341 409 + 112612857 agtatacagtgtttataagcctacagcagtgtacagtaatagcctaggccttcacattccctccctgctgatgcactgactcacccacaccacttgcaagttagtgccctatacagatgtaccctttcttatcttttatgctgtatttttactatatcttgtctatgtttaggtatgtttagatacacaagtacttaccattgtg--tttcagttgcctacagtatgtagtacagtaacatactgttacaggtttgtagcct-ggggtaatgggttgtcccatatagcctacgtgtgtagtagactctccatctaggttcatgaagtacactctataatacctgcataatgacaaaatcacctaatgatgatttctcagaacctatcttcatcatttagtgatgcatgactg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76897419 409 + 107442819 agtatacagtgtttataaGTCTACAGCAGTGTACAGTAATagcctaggccttcacattcccTCCCTGCTGACGCACAGACTCACCCACACCACTTGCAAGTTAGTGCCCTATACAGATGTACCCTTTCTTATcttttatgctgtatttttactatatcttgtctatgtttaggtatgtttagatacacaagtacttaccattgtg--tttcagttgcctacagtatgttgtacagtaacatactgttacaggtttgtagcct-ggggtAATGAGCTGTCCCATATAGCCTACGTGTGTAGTAGACTCTCCATCTAGGTTCATGAAGTACACTCTATAATACCTGcataatgacaaaatcacctaatgatgatTTCTCAGAACCTATCTTCATCGTTTAGTGACGCATGACTG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81160828 409 + 108555830 agtatacaatgtttgtaagtctacagcagtgtacagtaatagcctaggccttcacattccctccctgctgacgcactgactcacccacaccacttgcaagttagtgccctatacagatgtaccctttcttatcttttatgctgtatttttactatatcttgtctatgtttaggtatgtttagatacacaagtacttaccattgtg--tttcagttgcctacagtatgtagtacggtaacatactgttacaggtttgtagcct-ggggtaatgggctgtcccatatagcctacgtgtgtggtagactctccatctaggttcctgaagtacactctataatacctgcctaatgacaaaatcacctaatgatgatttctcagaacctattttcatcgtttagtgacgcatgactg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111395419 412 - 210400635 agtatacagtgtttataagtctacagtagtatatagctatatcctacgccttcacgctccctctctgctgactcagtgacttaactacaccacttgcaagttagtgccctgtgcagaggtaccatttcttatcttttgtgctgtatttttactatatcttgtctctgtttaggtgtgtttagatacacaaatacttatcattgtgtttttcaattgcctacagtattcagtacagtaatatactgttacaggtttgtagtctaggggtaataggctgtcccatatagcctaggtgtgtagtagcctccacatctaggttcatgaagcacattctataatacctgcatgatgacaaaatcacctaacgatgttttctcagaacctgtcttcatcgttaagtgatgcatggctg i calJac3.chr1 C 0 C 0 e mm10.chr19 38047399 510 - 61431566 I e canFam3.chr1 35285028 0 - 122678785 C a score=4773465.000000 s hg38.chr9_GL383541v1_alt 77688 1430 + 171286 TACATCATTTT-ATCAGGTTCTCACAACAGCCCTATAGATAtgaagtcatatctcacttcagt-----tttacagtctaaagtcagcacaaaacgtgaaaattatacattgtcaaaattgctcttaagagttccttaaattacagagtacagtgtacatgg-ttttatacgtattatgccatttttatgtacaacacggccaattttt-----------------------------------------------------------------------------ctttctgcatgg-----------------------------------------------------------aagtatatacttattta---------------------aacat--------------------------tagatgaaatagactccatttagtggctattcatatgaaaaacatatttcgtatgtgtgtgtgtt-----------------------gtactagtggttgggttgtttttagttgg----tttgtttttttCTAAGTACATTGA----TTTTCCACATATTGAATGTATATGTAAAGTGGCTCTCTTCTTTTATTAGTCTCATTTTGAAAATAAAGAAGCCAGTGATTCAGTTTATGTGTGTGT-----------------CATAAGGTTTTAAACCTAGGTTATAA-TTTACAAATCCTGAGTAGGGTCCACTGTACCACACAGTCACCCCAGCATGATTATCACACCTGAAGGACGGGGCATTCGGCATTCATTAGCTAACAGAATTCCATGGGTGCCAAGAAGCCCCTTGTGACTTGTGCCCTGACCATGCTGCCACAGTGATGGTGTGGGACTTAGACCT--ACCATGCTGTGCCATGGCTATTGGAAGTTATCGATACATTGAGTTCTGGCCATGCAGATGTGTCCAGCGATTGAACATGACTTCAAGACTCAGTTATTTATGGCTTGGCTTCACTTAAACAGAAAAGC---TTTTTCTGTTGTTTTCTGATGCCTGCATGTGACAAGGAGACATGTTCAGACCCCAGGGCACGTGGAGTCTGTACTTTTTGGCAAGATGGCTTAATGATTGTTTTTGATTGCTGACTTACTTTTTAAAAAA-ATCTATTTGGAA---------GTTTATGGCCCTTTTCTGACCCTTTATAAAGATTTTATCATCTCTAATAAATGTCTAGTAAATCAGTTCCAATTGCCTAGGCAGCCATATTTGAAGTGGATCCTTCCCTCTCCTCC-TGATGCCATTTCTCCAACACTGCGGTTGGTAAATCTC-CCCCAGATCCCTGGCCTGATGCATCACAGTCAACCTCCCAATCCCCCTGTGATTTCTGCCCTTCTTTGCCTTTTTC------------------------------------------------------TCATTTGTTTTGTTTACTCTAACATCTCTGAAGCACTGCTTGGTATTCTTATTGGTTTTAAAAGATGAGAAAAGGGAGT-atgtcagcaagagtggtggagtaaggacctcagagaatcctctccccataaaagcaatgagaacagcaaaagaaatggtc-aaaatcaactttttaagagctctggaaattaaccaaaggcttataacattcaggagcatgtattcaagaaaaatgaaggaatactgttaaaacactgaactttatggtgttctgcattatt s panTro4.chr9 68643343 1433 + 137840987 TACATCATTTT-ATCAGGTTCTCACAACAGCCCTATAGATAtgaagtcatatctcacttcagt-----tttacagtctaaagtcagcacaaaacgtgaaaattatacattgtcaaaattgctcttaagagttccttaaattacagagtacagtgtacatgg-ttttatacgtattatgccatttttatgtacaacacggccaagtttt-----------------------------------------------------------------------------ctttctgcatgg-----------------------------------------------------------aagtatatacttattta---------------------aacat--------------------------tagatgaaatagactccatttagtggctattcatatgaaaaacatatttcGTATGTGTGTGTGTT--------------------GTAGTACTAGTGGTTGGGTTGTTTTTAGTTGG----TTTGTTTTTTTCTAAGTACATTGA----TTTTCCACATATTGAATGTATATGTAAAGTGGCTCTCTTCTTTTATTAGTCTCATTTTGAAAATAAAGAAGCCAGTGATTCAGTTTATGTGTGTGT-----------------CATAAGGTTTTAAACCTAGGTTATAA-TTTACAAATCCTGAGTAGGGTCCACTGTACCACACAGTCACCCCAGCATGATTATCACACCTGAAGGACGGGGCATTAGGCACTCATTAGCTAACAGAATTCCATGGGTGCCAAGAAGCCCCTTGTGACTTGTGCCCTGACCATGCTGCCACAGTGATGGTGTGGGACTTAGACCT--ACCATGCTGTGCCATGGCTATTGGAAGTTATCGATACATTGAGTTCTGGCCATGCAGATGTGTCCAGCGATTGAACATGACTTCAAGACTCAGTTATTTATGGCTTGACTTCACTTAAACAGAAAAGC---TTTTTCTGTTGTTTTCTGATGCCTGCATGTGACAAGGAGACATGTTCAGACCCTAGGGCACGTGGAGTCTGTACTTTTTGGCAAGATGGCTTAATGATTGTTTTTGATTGCTGACTTACTTTTTTAAAAA-ATCTATTTGGAA---------GTTTATGGCCCTTTTCTGACCCTTTATAAAGATTTTATCATCTCTAATAAATGTCTAGTAAATCAGTTCCAATTGCCTAGGCAGCCATATTTGAAGTGGATCCTTCCCTCTCCTCC-TGATGCCATTTCTCCAACACTGCGGTTGGTAAATCTC-CCCCAGATCCCTGGCCTGATGCATCACAGTCAACCTCCCAATCCCCCTGTGATTTCTGCCCTTCTTTGCCTTTTTC------------------------------------------------------TCATTTGTTTTGTTTACTCTAACATCTCTGAAGCACTGCTTTGTATTCTTATTGGTTTTAAACGATGAGAAAAGGGAGT-atgtcagcaagagtggtgaagtaaggacctcagagaatcctctccccataaaagcaatgagaacagcaaaagaaatggtc-aaaatcaactttttaagagctctggaaattaaccaaaggcttataacattcaggagcatgtattcaagaaaaatgaaggaatactgttaaaacagtgaactttatggtgttctacattatt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64798498 1430 + 135191526 TACATCATTTT-ATCAGGTTCTCACAACAGCCCTATAGATAtgaagtcatatctcacttcagt-----tttacagtctaaagtcagcacaaaatatgaaaattatacactgtcaaaattgctcttaagagttccttaaattacagagtacagtgtacatgg-ttttatacgtattatgccatttttatgtacaacacggccaattttt-----------------------------------------------------------------------------ctttctgcatgg-----------------------------------------------------------aagtatatacttattta---------------------aacat--------------------------tagatgaaatagattccatttagtggctattcatatgaaaaacatatttcGTATGTGTGTGTGTC--------------------GTAGTACTAGTGGTTGGGTTGTTTTTAGTTGG----TTTGTTTTTCTCTAAGTACATTGA----TTTTCCACATATTGAATGTATATGTAAAGGGGCTCTCTTCTTTTATTATTCCCATTTTGAAAATAAAGAAGCCAGTGATTCAGTGTGTGTGTGTGT-----------------CATAAGGTTTTAAACCTAGGTTATAA-TTTACAAATCCTGAGTAGGGTCCACTGTACCACACAGTCACCCCAGCATGATTATCACACCTGAAGGACGGGGCATTCGGCATTCATTAGCTAATAGAATTCCATGGGTGCCAAGAAGCCCCCTGTGATTTGTGCCCTGACCATGCTGCCACAGTGATGGTGTGGGACTTAGACCT--ACCATGCTGTGCCATGGCTATTGGAAGTTATCAATACATTGAGTTCTGGCCATGCAGATGTGTCCAGCGATTGAACATAACTTCAAGACTCAGTTATTTATGGCTTGACTTCACTTAAACAGAAAAGC---TTTTTCTGTTGTTTTCTGATGCCTGCATGTGACAAGGAGACATGTTCAGACCCTAGGGCACGTGGAGTC--TACTTTCTGGCAAGATGGCTTAATGATTGTTTTTGATTGCTGACTTACTTTTTAAAAAA-ATCTATTTGGAA---------GTTTATGGCCCTTTTCTGACCCTTTATAAAGATTTTATCATCTCTAATAAATGTCTAGTAAATCAGTTCCAATTGCCTAAGCAGCCATATTTGAAGTGGATCCTTCCCTCTCCTTC-TGATACCA-TTCTCCAACACTGTGGTTGGTAAATCTC-CCCCAGATCCCTGGCCTGATGCATCACAGTCAACCTCCCAATCCCCCTGTGATATCTGCCCTTCTTTGCCTTTTTC------------------------------------------------------TCATTTGTTTTGTTTACTCTAACATCTCTGAAGCACTGCTTTGTATTCTTATTGGTTTTAAAAGATGAGAAAAGGGAGC-atgtcagcaagaatggtggagtaaggacctcagagaatcctctccccataagagcaatgagaacagcagaagaaatggtc-aaaatcaactttttaagaactctggaagttaaccaaaagcttacaacattcaggagcatgtattcaagaaaaatgaaggaatactgttaaaacagtgaactttatggtgttctacattatt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57835536 1427 - 122973662 TACATCATTTT-ATCAGGTTCTCACAACAGCCCTATAGATAtgaagtcttatctcacttcagt-----tttacagtctgaagtcagcacaaaatgtgaaaattatacattgtcaaaattgctcttaagagttccttaaattacagaatacagtgtacatgg-ttttatgcgtattatgccatttttatgtacaacacagccaattttt-----------------------------------------------------------------------------ctttctgcatgg-----------------------------------------------------------aggtatgtacttgttta---------------------aacat--------------------------tagatgaaatagattccatttagtggctattcatatgaaaaacatatttcgtgtgtgtgtgtgtgt----------------gtCGT-ATACTAGTGGTTGGGTTGTTTTTAGTTGG----TTTGTTTTTTTCTAAGTACATTGA----TTTTCCACATATTGAATGTATATGTAAAGTGGCTCTCTTCTTTTATTACTCCCATTTTGAAAAT----AAGCCAGTGATTCAGTTTGTGTGTGTGT-----------------CATAAGGTTTTAAACCTAGGTTCTAA-TTTACAAATCCTGAGTAGGGTCCACTGTACCACGCAGTCACCCCAGCATGATTATCACACCTGAAGGACGGGGCATTCGGTATTCATTAGCTAATAGAATTCCATGGGTGCCAAGAAGCCCCCTGTGATTTGTGCCCTGACCATGCTGCCACAGTGATGGTGTGGGACTTAGACCT--ATCACGCTGTGCCATGGCTACTGGAAGTTATCGATACATTGAGTTCTGGACATGCAGATGTGTCCAGCGATTGAACATGACTTCAAGACTCAATTATTTATGGCTTGACTTCACTTAAACAGAAAAGC---TTTTTCTGTTGTTTTCTGATGCCTGCATGTGACAAGGAGACATCTTCAAACCCTAGGGCATATGGAGTCTGTACTTTTTGGCAAGATGGCTTAATGATTGTTTTTCATTGCTG----ACTTTTTAAAAAA-AT-TATTTGGAA---------GTTTATGGCCCTTTTCTGACCCTTTATAAAGGTTTTATCATCTCTAATAAATGTCTAGTAAATCAGTTCCAATTGCCTAAGCAGCCATATTTGAAGTGGATCCTTCCCTCTCCTCC-TGATGCCATTTCTCCAACACTGTGGTTGGTAAATCTC-CCCCAGATCCCTGGCCTGATGCATCACAGTCAACCTCCCAATCCCCCTGTGATTTCTGCCCTTCTTTGCCTTTTTC------------------------------------------------------TCACTTGTTTTGTTTACTCTAACATCTCTGAAGCACTGCTTTGTATTCTTATTGGTTTTAAAAGATGAGAAAAGGGAGC-atgtcagcaagaatggtggagtaaggacctcagagaatcctctccccgtaaaaccaatgagaacagcagaagaaatggtc-aaaatcaactttttaagaactctggaagttaaccaaaggcttacaacattcaggagcatgtattcaagaaaaatgaaggaatactgttaaaacagtgaactttatggtgttctacattatt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79768478 1481 + 112192347 TATATCATTTT-ATCAGGTTCTCACAATAGCCCTATAGATAtgaagtcatatctcacttcagt-----tttacagtctaaagtcagc----aaggtgaaaattatacattgtcaaaattgctcttaagagttccttaaattacagagtacggtgcacatgg-ttttatacgtattatgccatttttatgaacaacacggccaattctt-----------------------------------------------------------------------------ctttctgcatgg-----------------------------------------------------------aagtatatacttattta---------------------aacat--------------------------tagatgaaatagattccatttagtggctattcatatgaaaaatatatttcGTGTGTGTGTGTGTC--------------------ATAGTACTCGTCGTTGGGTTGTTTTTAGTTGG----TTTGTTTTTTCTGAAGTACATTGA----GTTTCCACATATTGAATGTATGTGTAAAGTGGCTCTCTTCTTTTATTATTCCCATTTTGAAAATAAAGAAGCCAGTGATTCAGTCTGTGTGTGTGT-----------------CATAAGGTTTTAAACCTAGGTTATAA-TTTACAAATCCTGAGTAGGTTCCATTGTACCACACAGTCACCCCAGCACGATTATCACACCTGAAGGATGGAGCATTTGGCATTCATTAGCTAATAGAATTCCATGGGTGCCAAGAAGCCCCCTGTGATTTGTGCCCTGACCATGCTGCCACAGTGATGGTGTGGGACTTAAAACT--ATCATGCTGTGCCATGGCTATTGGAAGTTATCGAAACATTGAATTCTTGCCATGCAGATGTGTCCAGCAATTGAACATGACTTCAAGACTCAGTTATTTATGGCTTGACTTCACTTAAACAAAAAAGC---TTTTTCTGTTGTTTTCTGATGCTTGCATGTGACAAGGAGACATGTTCAGACCCTAGGGCATGTTGAGTCTGTACTTTTTGGCAGGATGGCTTAATGATTGTTTTTGATTGCTGACTTACTTTTAAAAAAA-ATCTATTTGGAA---------GTTTATGGCCCTTTTCTGACCCCTTACAAAGATTTTATCATCTCTAATAAATGTCTAGTAAACCCGTTCCAATTGCCTAAGCAACCATATTTGAAGTGGATCCTTCCCT---CTCC-TGACGCCATTTCTCCAACACTGTGTTTGGTAAATCTC-CCCCAGATCCCTGGCCTGATGCATCACAATCAACCTCCCAATCCCCCTGTGATTTCTGCCCTTCTTTTCCTTTTTCTCTTTTGTTTTGTTTACTCTAACATCTCTAAAGCATTGCTTTGTATTCTTATTGTCTTTTGTTTTGTTTACTCTAACATCTCTGAAGCACTGCTTTGTATTCTTACTGGTTTTAAAAGATGAGAAAAGGGAGC-atgtcagcaagaatggtggagtaaggacctcagagaatcctctccccataaaagcaatgagaacagcagaagaaatggtcaaaaatcaactttttaagaattctggacattaaccaaaagcttacaacattcaggagcatgtattcaagaaaaatgaaggaatattgttaaaacagtgaactttatggtgttctacattatt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80848750 1434 + 112612857 TATATCATTTT-ATCAGGTTCTCACAATAGCCCTATAGATAtgaagtcatatctcacttcagt-----tttacagtctaaagtcagcacaaaaggtgaaaattatacattgtcaaaattgctcttaagagttccttaaattacagagtacggtgcacatgg-ttttatacgtattatgccatttttatgaacaacacggccaattctt-----------------------------------------------------------------------------ctttctgcatgg-----------------------------------------------------------aagtatatacttattta---------------------aacat--------------------------tagatgaaatagattccatttagtggctattcatatgaaaaatatatttcGTGTGTGTGTGTGTC--------------------ATAGTACTCGTCGTTGGGTTGTTTTTAGTTGG----TTTGTTTTTTCTGAAGTACATTGA----GTTTCCACATATTGAATGTATATGTAAAGTGGCTCTCTTCTTTTATTATTCCCATTTTGAAAATAAAGAAGCCAGTGATTCAGTCTGTGTGTGTGT-----------------CATAAGGTTTTAAACCTAGGTTATAA-TTTACAAATCCTGAGTAGGTTCCATTGTACCACACAGTCACCCCAGCACGATTATCACACCTGAAGGATGGAGCATTTGGCATTCATTAGCTAATAGAATTCCATGGGTGCCAAGAAGCCCCCTGTGATTTGTGCCCTGACCATGCTGCCACAGTGATGGTGTGGGACTTAGAACT--ATCATGCTGTGCCATGGCTATTGGAAGTTATCGATACATTGAATTCTGGCCATGCAGATGTGTCCAGCAATTGAACATGACTTCAAGACTCAGTTATTTATGGCTTGACTTCACTTAAACAAAAAAGC---TTTTTCTGTTGTTTTCTGATGCTTGCATGTGACAAGGAGACATGTTCAGACCCTAGGGCATGTTGAGTCTGTACTTTTTGGCAGGATGGCTTAATGATTGTTTTTGATTGCTGACTTACTTTTTAAAAAA-ATCTATTTGGAA---------GTTTATGGCCCTTTTCTGACCCCTTACAAAGATTTTATCATCTCTAATAAATGTCTAGTAAACCCGTTCCAATTGCCTAAGCAACCATATTTGAAGTGGATCCTTCCCTCTCCTCC-TGACGCCATTTCTCCAACACTGTGTTTGGTAAATCTC-CCCCAGATCCCTGGCCTGATGCATCACAATCAACCTCCCAATCCCCCTGTGATTTCTGCCCttcttttcctttttc------------------------------------------------------tcttttgttttgtttactCTAACATCTCTGAAGCATTGCTTTGTATTCTTATTGTTTTTAAAAGATGAGAAAAGGGAGC-atgtcagcaagaatggtggagtaaggacctcagagaatcctctccccataaaagcaatgagaacagcagaagaaatggtcaaaaatcaactttttaagaattctggacattaaccaaaagcttacaacattcaggagcatgtattcaagaaaaatgaaggaatattgttaaaacagtgaactttatggtgttctacattatt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76897828 1417 + 107442819 TATATCATTTT-ATCAGGTTCTCACAATAGCCCTATAGATATGAAGTCATATCTCACTTCAGT-----TTTACAGTCTAAAGTCAGCACAAAAGGTGAAAATTATACATTGTCAAAATTGCTCTTAAGAGTTCCTTAAATTACAGAGTACGGTGCACATGG-TTTTATACGTATTATGCCATTTTTATGAACAACACGGCCAATTCTT-----------------------------------------------------------------------------CTTTCTGCATG----------------------------------------------------------------------------A---------------------AACAT--------------------------TAGATGAAATAGATTCCATTTAGCGGCTattcatatgaaaaatatatttcgtgtgtgtgtgtgtc--------------------atagtACTCGTCGTTGGGTTGTTTttagttgg----tttgttttttctgaagTACATTGA----GTTTCCACATATTGAATGTATATGTAAAGTGGCTCTCTtcttttattattcccattttgaaaataaagaagccagtgattcagtctgtgtgtgtgt-----------------cataaGGTTTTAAACCTAGGTTATAA-TTTACAAATCCTGAGTAGGTTCCATTGTACCACACAGTCACCCCAGCACGATTATCACACCTGAAGGATGGAGCATTTGGCATCCATTAGCTAATAGAATTCCATGGGTGCCAAGAAGCCCCCTGTGATTTGTGCCCTGACCATGCTGCCACAGTGATGGTGTGGGACTTAGAACT--ATCATGCTGTGCCATGGCTATTGGAAGTTATCGATACATTGAATTCTGGCCATGCAGATGTGTCCAGCAATTGAACATGACTTCAAGACTCAGTTATTTATGGCTTGACTTCACTTAAACAAAAAagc---tttttctgttgttttctgatgCTTGCATGTGACAAGGAGACATGTTCAGACCCTAGGGCATGTTGAGTCTGTACTTTTTGGCAGGATGGCTTAATGATTGTTTTTGATTGCTgacttacttttttaaaaa-atctatttggaA---------GTTTATGGCCCTTTTCTGACCCCTTACAAAGATTTTATCATCTCTAATAAATGTCTAGTAAACCCGTTCCAATTGCCTAAGCAACCATATTTGAAGTGgatccttccctctcctcc-tgacGCCATTTCTCCAACACTGTGTTTGGTAAATCTC-CCCCAGATCCCTGGCCTGATGCATCACAATCAACCTCCCAATCCCCCTGTGATTTctgcccttcttttcctttttc------------------------------------------------------tcatttgttttgtttactctAACATCTCTGAACCATTGCTTTGTATTCTTATTggttttaaaagatgagaaaagggaGC-ATGTCAGCAAGAATGGTGGAGTAAGGACCTCAGAGAATCCTCTCCCCctaaaagcaatgagaacagCAGAAGAAATGGtcaaaaatcaactttttaagaaTTGTGGACATTAACCAAAAGCTTACAACATTCAGGAGCATGtattcaagaaaaatgaaggaatattGTTAAAACAGTGAACTTTATGGTGTTCtacattatt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81161237 1427 + 108555830 TATATCATTTT-ATCAGGTTCTCACAATAGCCCTATAGATAtgaagtcatatctcacttcagt-----tttacagtctaaagtcagcacaaaaggtgaaaattatacattgtcaaaattgctcttaagagttccttaaattacagagtacggtgcacatgg-ttttacacgtattatgccatttttatgaacaacacggccaattctt-----------------------------------------------------------------------------ctttctgcatgg-----------------------------------------------------------aagtatatacttattta---------------------aatat--------------------------tagatgaaatagattccatttagtggctattcatatgaaaaatatatttcGTGTGTGTGTGTGTC--------------------ATAGTACTCGTCGTTGG---GTTTTTAGTTGG----TTTGTTTTTTCTGAAGTACATTGA----GTTTCCACATATTGAATGTATATGTAAAGTGGCTCTCTTCTTTTATTATTCCCATTTTGAAAATAAAGAAGCCAGTGATTCAGTCTGTGTGTGTGT-----------------CGTAAGGTTTTAAACCTAGGTTATAA-TTTACAAATCCTGAGTAGGGTCCATTGTACCACACAGTCACCCCAGCACGATTATCACACCTGAAGGATGGAGCATTTGGCATTCATTAGCTAATAGAATTCCATGGGTGCCAAGAAGCCCCCTGTGATTTGTGCCCTGACCATGCTGCCACAGTGATGGTGTGGGACTTAGAACT--ATCATGCTGTGCCATGGCTATTGGAAGTTATCGATACATTGAATTCTGGCCATGCAGATGTGTCCAGCAATTGAACATGACTTCAAGACTCAGTTATTTA--GCTTGACTTCACTTAAACAAAAAAGC---TTTTTCTGTTGTTTTCTGATGCTTGCATGTGAC-AGGAGACATGTTCAGACTCTAGGGCATGTTGAGTCTGTAC-TTTTGGCAGGATGGCTTAATGATTGTTTTTGATTGCTGACTTACATTTTTAAAAA-ATCCATTTGGAA---------GCTTATAGCCCTTTTCTGACCCCTTACAAAGATTTTATCATCTCTAATAAATGTCTAGTAAACCCGTTCCAATTGCCTAAGCAGCCATATTTGAAGTGGATCCTTCCCTCTCCTCC-TGACGCCATTTCTCCAACACTGTGTTTGGTAAATCTC-CCCCAGATCCCTGGCCTGATGCGTCACAATCAACCTCCCAATCCCCCTGTGATTTCTGCCCTTCTTTTCCTTTTTC------------------------------------------------------TCATTTGTTTTGTTTACTCTAACATCTCTGAAGCATTGCTTTGTATTCTTATTGGTTTTAAAAGATGAGAAAAGGGAGC-atgtcagcaagaatggtggagtaaggacctcagagaatcctctccgcataaaagcaatgagaacagcagaaaaaatggtcaaaaatcaactttttaagaattctggacattaaccaaaagcttacaacattcaggagcatgtattcaagaaaaatgaaggaatattgttaaaacagtgaactttatggtgttctacattatt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111395831 1474 - 210400635 TACATCATTGT-ATCAGGTTCTCACATCAGCCCTATAGATATGAAGTCATATCTCATTTTAAT-----TTCACAGtctaaagtgagcacaaaaggtaaaaattatacactgtcaaaattgctcttaaaagtttcttaAATTACA-AGTTTGGTACACATGGTTTTTCTATGTATTACGCCATTTTTATGTATAATATGGCCTATTTTT-----------------------------------------------------------------------------CTTTCTGCATGG-----------------------------------------------------------AAGTACATACTTATATA---------------------ACCAT--------------------------TAGATGAAATAGATTCCATTTAGTGGTTATTCATGTGAAAAATATATTTCgtgtgtgtgtgtgtgtgtgtTTAGTAGCAGTAGTAGTAGTACTAGTGGTCGGATTATTTTTAGTTGG----TTCGTTTTTTTCTAAGTACATTGA----TTTTCTTCATATTGAATGTATATGTAAAGTAGCTCTCTTCTTTTATTATTCCCATTTTGAAAATAAAGAAGCCAGTGATTGTGTGTGTGTGTGTGCGCACATGCACACGCGTGCATAAGGTTTTAAACCTAGATTGTAA-TTTACATATCCTGAGTAGGGTCCATTGCACTACACAGTCACCCCAGCATGATTATCACACCTGAAGGACCGAGCAGTCAGCATTCATTAGCAGATAGAATTCCATGGGTA-AAAGCAGCTCCCTGTGATTTGTGCCCTGAACACACTGCCACAGTGATGGCCTGGGACTTAGACCT--GTCATGCTGTGCCATGGCTATTAAAAGTTATCTATACATTGAGTTCTGGCTACGCAGATGCATCCAGCAATTGAACATGACTTCAAGACTCAGTTCTTTATGGCTTGACTTCACTTAAACAGAAAAGCAAGATTTTCTGTTGTTTTCTCATGCCTGCATGTGACAAGGAGACATGTTCAGACCCTAGGGCACGTGAAGTCTGTACTTTTTGGAAAGATGGCATAATGATTGTTTTTGATTGCTGACTTACTTTAAAAACAA-ATCCATTTGGAAATTTTGGAGGTTTACAGCCCTTGTCTGACCCCTTATAAAGA-TTTATCATCTCTAATAAATGTCTCGTAAATCAGTTCCAGTTGCCTAAGCAGCCATATTTGAAGTGGATCCTTCCCTCTCCT-C-TGCTGTCATGTCTCCAACACTATGGTTGGTAAATCTC-CCCCAGATCCCTGGCCTGATGCATCACAGTCAACCTCCCAATCCCCTTGTGATTTCTGCCCTTCTTTGCCTTTTTC------------------------------------------------------TCATTTGTTTTGTT-----TAACATCTCTGAAACATTGCTTTATATTCTTGTTGGTTTTAAAAGATGAGAAAAAGTAGC-atgtcagcaggaatggtggattaaggacctcacagaatcctctccccataaaagcaatgagaacaccagtagaaatggtc-aaaatcaactttgtaaaaactctggaagttaaccaaaggcttgcagcatttaggagcatgtattcaagaataatgaaggaatattgttaaaacagtgaactttatggtgttttaCATTATT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35285028 1542 - 122678785 cacatcattttcatcaggttcttacaatgagtctgtagatgggaagTCATATCACACTGGAGCTTGAATttatgttctaaagccagcacagaaggtgaaaatccgttactgtcacaattgcccttgaaacttgcttaaatt--agagtacagtgtacgtga-ctttccatgtattatactatctctatgtacaacacagccagtttttttaaaaaaagattttatttatttattcatgagaaacacagagggagaggcagagacataggcagagggagaagcaggctccctgcagggagcctgatgaaggattccatcccaggatcccaggaccccaggatcatgccctgagccgaaggcagacgctcaactactgagccacccaggtgcccccaacatgcccagttttccttttagtgttgaaatatat-AAATAGATTATATTTCATGGCGATTTGTATAAAA---TCATTTCATGTGTGTATGTAT---------------------ATATTAC-AATGGCTGGGTCATTTTCAGTTGGGTGTTTTTTTTTCCTCTGAGTACATTGAGTGCTTTCCCAAATATTGAATGTATATGTAATAGGACTCCACTGTTttgttattcccattttgcagataaagaaactgatgacacagTAAGCCTTTGCAT-----------------GATAAAGCTTTAAAC--AAATTTTAGCTTTACAAATCCTAGGTGGGGTCCACTGCACCACACGGTCACCTCAGCATGACCACCACACTTGAAGGACAGA--------CATTCATCAGCAAACAGAATTTCAGGAATACCAAGAAGTCCCCCATGATTCATGCTCTG-CCATAATGCCGTAATGATGGCCTGGGATTTAAATCCCAGAAACACTGTGCCTCGGCTATTGGAAGTCATTAATACATTGAGCTCTAGCTATGCAGATGTGTTTAGCAATTGAATGTGACATCAGAACTCCATTCT-----ATTTGCCTTCGCTGAAACAGAATGGA---TTTTTCTGTTGTTTTCTGATGTGTGCTTGAGACTAGAAGATA--TTCAGACTCTGAGGTTCATGCAACCTGACTTTTTTGGCAGGATAGTTTAATTTTTGGTTTTGATTACTAA---ACTTTAAAAAAAATATCCATTTGGAA---------TTTGATGGCCCTTTTCTGACCCATCATAAAGATTTGATTATTTCTAATAAACAACTTATAAATTAGTT-CAATTGCCTAAGCAGCAGTATTGGAAGAGTATCCTTCACTTCCCTCCTTGTCATCATATCTCCAACCCTGTGGCCAATAAATCCCTCCCCAGCCCCTTGGCCTGATGCAT--CAGTCAACATCCCAGTCTGTATGTGATCTCTGCTATTCTTTGCCTTTCTC------------------------------------------------------TTGTTTG---TGTCTGCTTTAATATCTTCAGAACATTGTTTTCTTTTATTAATGGTTTAAAAAGATGAAGAAAGGgaatgatgttagcaagaacggtagaataaggacttcagacaatcctgtcactgtaaaagccatgaaaacagt--caacagttgtg-aaaatcaactttttaagaa--ctggaaatcactcaaagacttgcaacatt-gggag--------------------------------------------tttat-----------ttaTT i canFam3.chr1 C 0 C 0 e mm10.chr19 38047399 510 - 61431566 I a score=490050.000000 s hg38.chr9_GL383541v1_alt 79118 159 + 171286 cccatTTtgatatttaaatatatatggaaatacaagggacccagaatagttaaaatgatcttgaaaatgagtata-ggtcggaggtctcatacttcccaatttcaaaacttactacacagctacagtaaggaggactctgtggtactggcataagaataa s panTro4.chr9 68644776 159 + 137840987 cccatTTtgatatttaaatatatatggaaatacaagggacccagaatagtcaaaatgatcttgaaaatgagtatg-ggtcggaggtctcatacttcccaatttcaaaacttactacacagctacagtaaggaggactctgtggtactggcataagaataa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64799928 160 + 135191526 cccatTTTGATATTTaaatatatatggaaatacaagggacccagaatagtcaaaatgatcttaaaaatgagtatgaggtcggaggtctcatacttctcaatttcaaaacttactacacagctacagtaaggaggactctgtggtactggaataagaataa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57836963 160 - 122973662 cccaatttgatatttaaatatatatggaaatacaagggacccagaatagtcaaaatgatcttgaaaatgagtatgaggttggaggtctcatacttcccaatttcaaaacttactacacagctacagtaaggaggactctatggtactggcataagaataa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79769959 160 + 112192347 cccatTTtgatctttaaatatatatggaaatacaagggacccagaatagtcaaaatgatcttgaaaatgagtatgaggttggaggtctcatacttcccaatttcaaaacttactacacagctacagtaaggaggactctatggtactggcataagaataa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80850184 160 + 112612857 cccatTTtgatctttaaatatatatggaaatacaagggacccagaatagtcaaaatgatcttgaaaatgagtatgaggttggaggtctcatacttcccaatttcaaaacttactacacagctacagtaaggaggactctatggtactggcataagaataa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76899245 160 + 107442819 cccattttgatctttaaatatatatggaaatacaagggacccagaatagtcaaaatgATCTTGAGAATGAGTATGAGGTTGGAGGTCTcatacttcccaatttcaaaacttactacacaGCTACAGTAAGGAGGACtctatggtactggcataagaataA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81162664 160 + 108555830 cccatTTtgatctttaaatatatatggcaatacaagggacccagaatagtcaaaatgatcctgaaaatgagtatgaggttggaggtctcatacttcccaatttcaaaacttactacacagctacagtaaggaggactctatggaactggcataagaataa i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111397305 160 - 210400635 CTCATTTtgatctttaaatttatatggaaatagaagggacactgagtagtcaaaatgatcttgaaaaggagtatgaaggcagagaactcatacttcccaatttcaaaacgtactatacagctacagtaagcaggactgtatggtactggcataagaataa i calJac3.chr1 C 0 C 0 e mm10.chr19 38047399 510 - 61431566 I e canFam3.chr1 35286570 0 - 122678785 C a score=1048936.000000 s hg38.chr9_GL383541v1_alt 79277 316 + 171286 acatagatcaatagaatcgaattgagaagtccagaaataaaccccacatctatcctcaactga-tttcaacaatggtggcaagaaaattcaacgggcaaaaat----------tagatcaaagatctaaacgtaaaagctgaaacaataaaactctgaga----aaaaaaacatagctgtaaatcttcgtgaccttaaatttgagaatggcttcttagctacgatgccaaaggc-----agaaaaaaaaaaactaaaaatagaaaattaaacttcatcaaaatttaaaaattttatacttcaaaggataccat-aaaaaaggtgaaaagacggccag s panTro4.chr9 68644935 316 + 137840987 acatagatcaatagaatcgaattgagaagtccagaaataaaccccacatctatcctcaactga-tttcaacaatggtggcaagaaaattcaacgggcaaaaat----------tagatcaaagatctaaacgtaaaagctgaaacaataaaactctgagg----aaaaaaacatagctgtaaatcttcgtgaccttaaatttgagaatggcttcttagctatgatgccaaaggc-----agaaaaaaaaaaactaaaaatagaaaattaaacttcatcaaaatttaaaaattttatatttcaaaggataccat-aaaaaaggtgaaaagaaggccag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64800088 311 + 135191526 acatagatcaatagaatagaattgagaagtccagaaataaaccccacatctatcctcaactga-tttcaacaatggtggcaagaaaattcaacgggcaaaaat----------tagatcaaagatctaaatgtaaaagctgaaacaataaaactc---ag----aaaaaaacatagctgtaaatcttcgtgaccttaaatttgagaatggcttcttagctatgatgccaaaggc-----ag--aaaaaaaaactaaaaatagaaaattaaacctcatcaaaatttaaaaattttatatttcaaaggataccat-aaaaaaggtgaaaagacggctgg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57837123 314 - 122973662 acatagatcaatagaatcaaattgagaagtccagaaataaaccccacatctatcctcaactga-tttcaacgatggtggcaagaaaattcaacgggcaaaaat----------tagatcaaagatctaaatgtaaaagctgaaacaacaaaactctg-ag----aaaaaaacatagctgtaaatcttcgtgaccttaaatttgagaatggcttcttagctatgatgccaaaggc-----ag-aaaaaaaaaactaaaaatagaaagttaaacttcatcaaaatttaaaaattttatatttcaaaggataccat-aaaaaaggtgaaaagacagccgg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79770119 312 + 112192347 acacagattaataaaaacgaattgagaagtccagaaataaaccccacatctatcctcagttta-ttttaacaatggtggcaagaaaattcaatgggcaaaaat----------tagatcaaagatctaaatgtaaaaggtgaaacaataaaactctg-ag----aaaaaaaca-agctgtaaatcttcatgaccttaaatttgagaatggcttgttagctatgatgccaaaggc-----ag--gaaaaaaaactaaaaacagaaaattaaacttcatcaaaatgtaaaaattttgtatttcaaaggataccat-aaaaaaggtgaaaagacggccgg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80850344 312 + 112612857 acacagattaataaaaacgaattgagaagtccagaaataaaccccacatctatcctcagttta-ttttaacaatggtggcaagaaaattcaatgggcaaaaat----------tagatcaaagatctaaatgtaaaaggtgaaacaataaaactctg-ag----aaaaaaaca-agctgtaaatcttcatgaccttaaatttgagaatggcttgttagctatgatgccaaaggc-----ag--gaaaaaaaactaaaaacagaaaattaaacttcatcaaaatttaaaaattttgtatttcaaaggataccat-aaaaaaggtgaaaagacggccgg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76899405 312 + 107442819 ACACAGATTAATAGAATCGAACTGagaagtccagaaataaaccccaCATCTATCCTCAGTTTA-TTTTAACAATGGTGGCAAGAAAATTCAATGGGCAAAAAT----------tagatcaaagatctaaatgtaaaagctgaaacaataaaactctg-ag----aaaaaaaca-agctgtaaatcttcatgaccttaaaTTTGAGAATGGCTTCTTAGCTATGAtgccaaaggc-----ag--gaaaaaaaactaaaaatagaaaattaaacttcatcaaaatttaaaaattttgtatttcaaaggataccat-aaaaaaGGTGAAAAGacggccag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81162824 312 + 108555830 acacagattaatagaatcgaattgagaagtccagaaataaaccccacatctatcctcagttta-ttttaacaatggtggcaagaaaattcaatgggcaaaaat----------tagatcaaagatctaaatgtaaaagctgaaacaataaaactctg-ag----aaaaaaaca-agctgtaaatcttcgtgaccttaaatttgagaatgacttcttagctatgatgccaaaggc-----ag--gaaaaaaacctaaaaatagaaaattaaacttcatcaaaattaaaaaattttgtatttcaaaggataccat-aaaacaggtgaaaagatggccgg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111397465 322 - 210400635 acatagatcgatagaatcaaattgagaagtccagaaataaaccccacatctatcctcaattaa-tttcaacagtgatggcaagacaattcaatgggcaaaaaT----------TATatcaaagatctatatgtaaaagctgaagcagtaaaactctg-agaccaaaaaaaaaa-acctgtagatcttcatgaccttaagttagagaatggcttcttagctatgatgccaaaggttgtgaag--aaataaaacctaaaaacagaaaattaaacttcatcaaaattcaaaaattttgtatttcaaatgacaccataaaaaaaggtgaaaagctggctgg i calJac3.chr1 C 0 C 0 s canFam3.chr1 35286570 321 - 122678785 acatagatcaatggaatagaattga-aagttgagaaataaatcctgtgtctatgctctattgattttcaacaaagatgccaagacaagttaatgggcaaacatgaactcaaaatagatcaaagacctaaatgtaatagctaaaactataaaactctt-ac----aagaaaacatagctataaacctttatgaccttaaattagacaagagtttcttagctatgacatcaaaagc-----acatacaaccaaagcaaaaataggaaattggactttatcaaaattaaaga--cttgtttttcaaaagataccat-caagaaagtg--aagacagccag i canFam3.chr1 C 0 I 305 e mm10.chr19 38047399 510 - 61431566 I a score=1125568.000000 s hg38.chr9_GL383541v1_alt 79593 399 + 171286 gagtggtggctcactcctgtaatcctagcactttgggaggccgaggcgggcagactgcctgagctcaggagttcgagaccagtctgggcaacatggtgaaa--ccccgtctgtactaaaatac-aaaaaattagcagggcgtggcagcgtacacctgtagtcccagctaatcaggagactgaggtaggagaattgcttgagcccaggaggtggaggttgcagtgagccgagatcacgccactgcattccagcctgggcggcacagcaagactccgtctccatt--t----aaaaaaaaaaaaaggtgaaaagacaaagcacagaatgggaaaaagtatttgcaaattttctattcgataagatctattatccagaatgtataaaacctcttataactcaacaataaaa s panTro4.chr9 68645251 398 + 137840987 gagtggtggcttactcctgtaatcctagcactttgggaggccgaggcgggcggactgcctgagctcaggagttcgagaccagtctgggcaacatggtgaaa--ccccgtctctgctaaaatac-aaaaaattagcagggcgtggcagtgtacacctgtagtcccagctaatcaggagactgaggtaggagaattgcttgagcccaggaggcggaggttgcagtgagccgagatcacgccactgcattcaagcctgggcggcacagcaagactccgtctccatt--t-----aaaaaaaaaaaaggtgaaaagacaaagcacagaatgggaaaaaatatttgcaaattttctatttgataagatctattatccagaatgtataaaacctcttataactcaacaataaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64800399 403 + 135191526 gagcggtggctcactcctgtaatcccagcactttgggaggccgaggcgggcggactgcatgagctcaggagttcgagaccagtctgggcaacatggtgaaa--ccccgtctgtactaaaatac-aaaaaattagcagggcgtggcagtgtacacctgcagtcctagctaatcaggagactgaggtaggagaattgcttgagcccaggaggtggaggttgcagtgagccaagatcatgccactgcattccagcctgggtggcacagcaagactccgtctccatt--taaaaaaaaaaaaaaaaaggtgaaaagacaaagcacagaatgggaaaaaatatttgcaaattttctatctgataagatctattatccagaatgtataaaacctcttataactcaacaataaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57837437 402 - 122973662 gagcggtggctcactcctgtaatcctagcactttgggaggccaaggctggcagactgcctgagctcaggagttcgagaccagcctgggcaacatggtgaaaccccccgtctgtactaaaatac-aaaaaattagcagggcatggcagcatacacccatagtcccagctaatcaggagactgaggtaggtaaatcgcttgagcccatgaggcagaggttgcagtgagctgagatcacgccactgcattccagcctgtgtggcacagcaagactctgtctccatt--t---aaaaaaaaaaaaaaggtgaaaagacaaagcacagaatgggaaaaaatatttgcaaattttccatctgataggatctattatccagaatgtataaaacctcttataactcaacaataaaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79770431 400 + 112192347 gagcggtggctcactcctgtaatcctagcac-ttgggaggctaaggcgggtggattgcttgagttcaggagttcgagaccagcctggacaacatggtgaaa--ccccatctgcactaaaatacaaaaaaattagccgggcatgacagcatacacctgcagtcccagctacttgggaggctgaggtaggagaattgcttgagcccaggcggtggaggttgcagtgagccgagatcacatcactgcattccaacctgggcggcagagcaagactccgtctccatt--a---aaaaaaaaaaaaaaagtgaaaagacaaagcacagaatgggaaaaaatatttgcaaattatctatctgataagatctattatccagaatttataaaacctcttataactcaacaataaaa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80850656 402 + 112612857 gagcggtggctcactcctgtaatcctagcac-ttgggaggctaaggcgggtggattgcttgagttcaggagttcgagaccagcctggacaacacggtgaaa--ccccatctgcactaaaatacaaaaaaattagccgggcatgacagcatacacctgcagtcccagctacttgggaggctgaggtaggagaattgcttgagcccaggcggtggaggttgcagtgagccgagatcacatcactgcattccaacctgggtggcagagcaagactccgtctccattaaa---aaaaaaaaaaaaaaagtgaaaagacaaagcacagaatgggaaaaaatatttgcaaattatctatctgataagatctattatccagaatttataaaacctcttataactcaacaataaaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76899717 401 + 107442819 gagcggtggctcactcctgtaatcctagcactttgggaggctggggcgggtggattgcttgagttcaggagttcgagaccagcctggacaacacggtgaaa--ccccgtctgcactaaaatacaaaaaaattagccaggcatgacagcatacacctgcagtcccagctacttgggaggctgaggtaggagaattgcttgagcccaggaggtggaggttgcagtgagccgagatcacgccactgcattccagcctgggcggcagagcaagactctgtctccatt--a---aaaaaaaaaaaaaaagtgaaaagacaaagcacagaatgggaaaaaatatttgcaaattatctaTCTGATAAGATCTattatccagaatttataaaacctcttataactcaacaataaaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81163136 399 + 108555830 gagcagtggctcactcctgtaatcctagcactttgggaggctgaggcgggtggattgcttgagttcaggagttcgagaccaacctggacaacatggtgaaa--ccccgtctgcactaaaatacaaaaaaattagccgggcatgacagcatacacctgcagtcccagctacttgggaggctgaggtaggagaattgcttgggcccaagaggtggaggttgcggtgagccgagatcatgccactgcattccagcctgggcggcagagcaagactccgtctccatt-------taaaaaaaaaaaaagtgaaaagacaaagcacagaatgggaaaaaatatttgcaaattatctatctgataagatctattatccagaatttataaaacctcttataactcaacaataaaa i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111397787 392 - 210400635 gcatggtgactca-tactgtagtcctatcattttgggaggccaaggtgggcagattgcctgagctcagaagctcaagtacagcctgtgcaacatggtgaaa--ccccatctctactaaagtac-aaaaaattagccgggtgtagtggcacacacctgtagtcccagctacttgggaggctgaagtaggaaaattacttgaatccgggaggcagaggttgcagtgagctaagattgagccactgcactccagcctgggagacagagtgagactccatctgcatt--a-------aaaaaaataaagtgaaaagacaaatcacagaatgggaaaacatatttgtaaatcatctgtctcataagatctattatctagaatttataaaacctcttataact---caatgaaa i calJac3.chr1 C 0 C 0 e mm10.chr19 38047399 510 - 61431566 I e canFam3.chr1 35286891 305 - 122678785 I a score=39251.000000 s hg38.chr9_GL383541v1_alt 79992 12 + 171286 agacaacccaat s panTro4.chr9 68645649 12 + 137840987 agacaacccaat i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64800802 12 + 135191526 agacaacccaat i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57837839 12 - 122973662 agacaacccaat i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79770831 12 + 112192347 agacaacccaat i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80851058 12 + 112612857 agacaacccaat i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76900118 12 + 107442819 aaaaaacccaat i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81163535 12 + 108555830 agacaacccaat i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111398179 12 - 210400635 agagaatccagt i calJac3.chr1 C 0 C 0 s mm10.chr19 38047909 12 - 61431566 AAATAACCTATT i mm10.chr19 I 510 C 0 e canFam3.chr1 35286891 305 - 122678785 I a score=3227858.000000 s hg38.chr9_GL383541v1_alt 80004 939 + 171286 ttttaaaatggacaaacgattt-gaacagacatttttccaaagtagatgtacattaatggccaataagcatatgaaa-gatgctctacataattagtcacttgagaaatgcaaatcaaaagcataatcagaga-----tcaattcacatcaattcactaaaattaaaaaaaagatgggcaataacaagtgttggtgag------gatgtggagaaattggaactctcatacattgctggtggaaatgtaaatgatgcaaccacttgagaaagcagtttggcagttcttcaaaaagttaaacatagaatttccatgtggcctaacaattccactcct-aggcatacacc--taggagaagtgaa-atttttatatacaaaaacacttgcataaaaatgttaatggcaggat---tattcataatagtcaaaaaggagaggcaatccaaatgtccatcaactaatgaatgaataaataaaatgtggta-atccataaaata---------------gaatatt----agcccccaaaaagaatgaaattctaatatatgctacaacatggatgaaccttgaaaa---tatgccaggtgaaagaagctagtcacaaagggacacatattatataattctatttatataaagtttccagaataggcaagttcaggcagacagaaagtagatttgtagtttccagatgctaggggtggggagaatgagggatgactgctaatggatacagggtttccttttggggttatggtgaaaatgttctggaattagatagtggt--gatgg-tgcacaaatttatgaacatgctaaaaacctctgaattgtattaaaagggtgaattctatggaatgcgaattatgtctaaaGTTAACTTCCAAATATCAATTT----------GATTAAG------------------------------------ATGGAATAAATAAAACATTTTTTTACACCCAAAGAAAACTTCGTTAATTCACTCGGTGGTAAAATGATTCTTTT s panTro4.chr9 68645661 936 + 137840987 ttttaaaatggacaaacgattt-gaacagacatttttccaaagtagatgtatattaatggccaataagcgtatgaaa-gatgctctacgtaattagtcacttgagaaatgcaaatcaaaagcataatcagaga-----tcaattcacatcaattcactaaaattaaaaaaaagatgggcaataacaagtgttggtgag------gatgtggagaaattggaactctcatacattgctggtggaaatgtaaatgatgcaaccacttgagaaagcagtttggcagttcttcaaaaagttaaacatagaatttccatgtggcctaacaattccactcct-aggcatacacc--taggagaagtgaa-atttttatatacaaaaacacttgcataaaaatgttaatggcaggat---tattcataatagtcaaaaaggagaggcaatccaaatgtccatcaactaatgaatgaataaataaaatgtggta-atccatcaaata---------------gaatatt----agcccccaaaaagaatgaaattctaatacatgctacaacatggatgaaccttgaaaa---tatgccaggtgaaagaagctagtcacaaagggacacatattatataattctatttatataaagtttccagaataggcaagttcagacaggcagaaagtagatttgtggtttccagatgctaggggtggggagaatgagggatgactgctaatggatacagggtttccttttggggttatggtgaaaatgttctggaattagatagtggt--gatgg-tgcacaaatttatgaacatgctaaaaacctctgaattgtattaaaagggtgaattctatggaatgcgaattatgtctaaaGTTAACTTCCAAATATCAATTT----------GATTAAG------------------------------------ATGGAATAAATAAAACA---TTTTACACCCAAAGAAAACTTCGTTAATTCACTCGGTGGTAAAATGATTCTTTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64800814 936 + 135191526 ttttaaaatggacaaaggattt-gaacagacatttttccaaagtagatgtacattaatggccaataagcacatgaaa-gatgctctacataattagtcacttgagaaatgcaaatcaaaagcataatcagaga-----tcacatctactgggatcactaaaattaaaaaaaagatgggcaataacaagtgttggtgag------gatgtggagaaattggaactctcatacattgctggtggaaatgtaaatgatgcaaccacttgagaaagcagtttggcagttcttcaaaaagttaaacatagaatttccatgtggcctaacaattccactcct-aggcatacacc--taggagaactgaa-atttttgtatacaaaaacacttgcataaaaatgctcatggcaggat---tattcataatagtcgaaaagtagaggcaatccaaatgtccatcaactaatgaataaataaataaaatgtggtatagccataaaata---------------gaatatt----agccccc-aaaaggatgaaattctaatatatgctacaacatggatgaaccttgaaag---tatgccaggtgaaagaagctagtcacaaagggacacatattatataattctatttatataaagtttccagaataggcaagttcaggcagacagaaagtagatttgtggtttccagaggctaggggtggggagaatgagggatgactgctaatggatacaggttttccttttggggttatggtgaaaatgttctggaattagatagtgtt--gatgg-tgcacaactttatgaatatgctaaaaacctctgaattgtattaaaagggtgaattctatggaatgcgaattatatctAACGTTAACTTCCAAATATCAATCT----------GATTAAG------------------------------------ATGGAGTAAATAAAACA---TTTTACACCGAAAGAAAATTTCGTTAATTCACTCGGTGGTAAAATGATTCTTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57837851 931 - 122973662 ttttaaaatggacaaaggattt-gaacagacatttttccaaagtagatgtacgttaatggccaacaagcacatgaaa-gatgccctacataattagtcacttgagaaatgcaaatcaaaagcataatcagaga-----tcacatctactaggatcactaaaattaaaaaaaagatgggcaataacaagtgttggtgag------gatgtggagaaattggaa--ctcatacattgctggtggaaatgtaaatgatgcaaccacttgagaaagcagtttggcagttcttcaaaaagttaaacatagaatttccatgtggcctaacaattccactcct-aggcatacacc--taggagaattgaa-atttttgtatataaaaacacttgcataaaaatgcttatggcaggat---tattcataatagtcaaaaagtagaggcaatccaaatgtccatcaactaatgaatg----aataaaatgtggtatatccataaaata---------------gaatatt----agcccccaaaaagaatgaaattctaatatatgctacaacatggatgaaccttgaaaa---tatgctaggtgaaagaagctagtcacaaagggacacatattatataattctatttatataaagtttccagaataagcaagttcaggcagacagagagtagatttgtggtttccagaggctaggggtggggagaatgagggatgactgctaatggatacagggtttccttttggggttatggtgaaaatgttctggaattagatactggt--gatgg-tgcacaactttatgaacatgttaaaaacctctgaattgtattaaaagggtgaattctatggaatgcaaattatttctaaaGTTAACTTCCAAATATCAATCT----------GATTAAG------------------------------------ATGGAATAAATAAAACA---TTTTACACCCAAAGAAAACTTCGTTAATTCACTTGGTGGTAAAATGATTCTTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79770843 941 + 112192347 ttttaaaatggacaaaggatttccaacagacatttttccaaagtagatgtacattaatagccaataagcacatgaaa-gatgctctacataattagtcactcaagaaatgcaaatccaaagcataaccagaga-----tcacatctactagcgtcactataattaaaaaaaagatgggcaataacaagtgttggcgag------gatgtggaaaagttggaactctcatacactgctggtggagatgtaaatgatgcaaccacttgagaaagcagtttggcagttcgtcaaaaagttaaacatagaatttccatgtggcctaacaattccactcct-aggtatacacc--taggagaactgaa-atttttgtatacaaaaacacttgcataaaaatgctcatggcaggat---tattcataatagtcaaaaagtagagacaatccaaatgtccatcaactaatgaatgaataaatcaaatgtggtatatccataaaata---------------gaatatc----atcccccaaaaagaatgaaattctaatatatgctacaatatggatgaaccttgaaaatattatgctgggtgaaagaagctagtcacaaagggacacatattatataattctattcatataaagtttccagaataggcaagttcaggcaaacagaaagtagatcagtggtttccagaggttgggggtcgggagaatgaggggtgactgctaatcgatacagggtttccttttggggttatggtgaaaatgttctggaattagatagtggt--gatgg-tgcacaactttgtggatatgctaaaaacctctgaattgtattaaacgggtgaattctatggaatgtgaattatgtctaaaGTTAACTTCCAAATATCAATCT----------GATTAAG------------------------------------ATGGAATAAATAAAACA---TTTTACACCCAAAGAAAACTTCATTAATTCACTCGGTGGTAAAATGATTCTTTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80851070 941 + 112612857 ttttaaaatggacaaaggatttccaacagacatttttccaaagtagatgtacattaatagccaataagcacatgaaa-gatgctctacataattagtcactcaagaaatgcaaatccaaagcataaccagaga-----tcacatctactagcgtcactataattaaaaaaaagatgggcaataacaagtgttggcgag------gatgtggaaaagttggaactctcatacactgctggtggagatgtaaatgatgcaaccacttgagaaagcagtttggcagttcatcaagaagttaaacatagaatttccatgtggcctaacaattccactcct-aggtatacacc--taggagaactgaa-atttttgtatacaaaaacacttgcataaaaatgctcatggcaggat---tattcataatagtcaaaaagtagagacaatccaaatgtccatcaactaatgaatgaataaatcaaatgtggtatatccataaaata---------------gaatatc----atcccccaaaaagaatgaaattctaatatatgctacaatatggatgaaccttgaaaatattatgctgggtgaaagaagctagtcacaaagggacacatattatataattctattcatataaagtttccagaataggcaagttcaggcaaacagaaagtagatcagtggtttccagaggttgggggtcgggagaatgaggggtgactgctaatagatacagggtttccttttggggttatggtgaaaatgttctggaattagatagtggt--gatgg-tgcacaactttgtgaatatgctaaaaacctctgaattgtattaaacgggtgaattctatggaatgtgaattatgtctaaaGTTAACTTCCAAATATCAATCT----------GATTAAG------------------------------------ATGGAATAAATAAAACA---TTTTACACCCAAAGAAAACTTCATTAATTCACTCGGTGGTAAAATGATTCTTTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76900130 940 + 107442819 ttttaaaatggacaaaggattt-caacagacatttttccaaagtagATGTACAttaatagccaataagcacatgaaa-gatgCTCTACATAATTAGTCActcaagaaatgcaaatcaaaagcataaCCAGAGA-----TCACATCTACTAGCGtcactataatttaaaaaaagatgggcaataacaagtgttggtgag------gatgtggaaaagttggaactctcatacactgctggtggagaTGTAAATGATGCAACCACTTgagaaagcagtttggcagttcgtcaaaaagttaaacatagaatttccATGTGGCctaacaattccactcct-aggtatacacc--tAGGAGAATTGAA-ATTTTTGTATACAAAAACACTTGCATAAAAATGCTCATGGCaggat---tattcataatagtcaaaaagtagagacaatccaaatgtccatcaactaatgaatgaataaatcaaatgtggtatatccataaaata---------------gaatatt----atcccccaaaaagaatgaaattctaatatatgctacaatatggatgaaccttgaaaatattatgctaggtgaaagaagctagtcacaaagggacacatattatataattctattcATATAAAGTTTCCAGAATAGGCAAGTTCAGGcaaacagaaagtagatcagtggtttccagaggttgggggtggggagaatgaGGGATGACTGCTAATGGATACAGGCTTTCTTTTTGGGGTTAtggtgaaaatgttctggaattagatagtggt--gatgg-tgcacaactttgtgaatatgctaaaaacctCTGAATTGTATTAAAAGGGCGAATTCTATGGAATGTGAATTATGTCTAAAGTTAACTTCCAAATATCAATCT----------GATTAAg------------------------------------atggaataaataaaaca---ttttacacCCAAAGAAAACTTCATTAATTCACTCGGTGGTAAAATGattctttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81163547 937 + 108555830 ttttaaaatggacaaaggattt-caacagacatttttccaaagtagatgtacattaatagccaataagcacatgaaa-gatgctctacataattagtcactcaagaaatgcaaatcaaaagcataaccagaga-----tcacatctactagcgtcactataattttaaaaaagatgggcaataacaagtgttggtgag------gatatagaaaagttggaactctcatacactgctggtggagatgtaaatgatgcaaccacttgagaaagcagtttggccgttcgtcaaaaagttaaacatagtatttccatgtggcctaacaattccactcct-aggtatacacc--taggagaattgaa-atttttgtatacaaaaacacttgtataaaaatgctcatggcaggat---tattcataatagtcaaaaagtagagacaatccaaatgtc---caactaatgaatgaataaatcaaatgtggtatatccataaaata---------------gaatatt----atcccccaaaaagaatgaaattctaatatatgctacaatatggatgaaccttgaaaatattatgctaggtgaaagaagctagtcacaaagggacacgtattatataattctattcatatgaagtttccagaataggcaagttcaggcaaacagaaagtagatcagtggtttccagaggctgggggtcgggagaatgaggggtgactgctaatagatacagggtttccttttggggttatggtgagaatgttctggaattagatagtggt--gatgg-tgcacaactttgtgaatatgctaaaaacctctgaattgtattaaaagggtgaatcctatggaatgtgaattatgtctaaaGTTAACTTCCAAACATCAATCT----------GATTAAA------------------------------------ATGGAATAAATAAAACA---TTTTACACCCAAAGAAAACTTCATTAATTCACTCGGTGGTAAAATGATTCTTTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111398191 934 - 210400635 ttattaaatgaacaaaggattt-gaagaggcgattctctgaagtagatgtacattaatggtcaataagcacatgaaa-gatgctctatgtcattagtcactcaagaaatgcaaatcaaaagcatactcagaaatcacttcacatctcttaggatcattacaat--aaaaaaagatgggcaataacaagtgttggtgag------gatgtggagaaactggaactctcatacattgctggtggaaatgtaaatgaaacaaccacttgagaaagcagtttggcagttcctcaaaatgttaaacctagaattttcatgtcccctaacagtttcactcctaaggcatacacc--taagagaactgaa-atttttgtatacaaaaacactttcataaacatgcccatggcagcat---tattcataatagtcgaaaagcagaaacaatccaaatgtccatcaactaatgaatgaataagtaaaatatgatacattcatagaata---------------gaatttt----agacccaaaaaggaatgaaattctagtatatgctacaacatggatgaaccttgaaaatactatgctgggtgaaagaagctagtaacaaatggacacatgtc-----attctatttatacaaagtttccagaataagcaagttcaagcagacagaaagtagattcatggtttccagaggctgagggtggggagaatgagggatgactgctaatggacacaggatttccttttggggttatggtgaaaatagcctggaattagatagtagt--gatgg-tgtacaactttgtgaatatcctaaaaacctctgaattgtattaaaagggtgaatactatggaatgtgaattatgtcta-----aatTTCTACATATCAATCT----------GATTAAG------------------------------------ATGGAATAAAGAAAATG---TTTTGTACACAAAGAAAACTTCATTAATTCACTCTGTGGTAAAATGATTCTTTT i calJac3.chr1 C 0 C 0 s mm10.chr19 38047921 847 - 61431566 TTTTTTaatgggaaaagaattt-gtatatgtttgtttgcaaagaaggcataca--agtggccaatagacacaggaaa-ggtattctgcatcataaatcattagataaat---------aggcatactgggataccactttatatgtaccaggatgtctcttat--aaagaaagatggacaataccaggtatagatagttctatctataggtaaagaatagga--tgaatacgttgtgggtag-gatgcaaacactgtatccat---agaagaatttctggcagttcctcaaaaagctaaacatagagttaccatatgagctaatgattagtgaata-agggtctcatcagtgagagacttgaacattcattcactgaaaactcattg------agtgctcacaatagcctccctgctcatcatagcaagaagataga-atagcacaaacatttgtcagctggtgactg-----------tagggtg------caaaatg---------------ggac-tg----tgccctaagaagaaatgatgttctaacaca------------ggtgaaccttgaaga-----cacctgaggaaccgtgccagtcat------atgtatactataaggctctacttacaagccactctcagaacaggcaaatt-------aca----------ctgtggtctccagaggctcatga-gaggagagtgaagaacaactgtgaacgagtttagaaattcggtttgg----atggcacaaatgttctagaatccaacaataatgagatggttttacaactttgcaaatgctcggaaaaccactgaattgtattaaaagggtagattctatgacgagtgaattCTGTGTAAAGTTAGAGTCCTGATGTCAGTCT----------GACCATT------------------------------------GTGGAATAAA----------TCCTGGG--------------CATTGCTTCCCTCTGTGGT---ATGTTTCTCTT i mm10.chr19 C 0 C 0 s canFam3.chr1 35287196 908 - 122678785 tcttaaaaaaaaaagataaTGT-GTa-----------------------------aatggccaataagcacatgaaaggatgctctgcatcattcatcattagagcaaggcaaatcaaaagcacaattagatactacttcacatctactaagatgcctgtaat--aacaaaagatggacagtgacaaat---ggtgac------catgtggagaaatt-------tcattc-ttcctaatggacgtgtaaatggtgttgccgttttagaaaacagcttggcagttcttcacaaagat-aacctagaattatcatgtgacctagtagttcccctcct-----atatacc--tagaagaattgaa-act------tacataaaaagttgtacaatactgttcatagtagcat---tattcaaaatagccaacaagtagaaaaaactcacatgtccatcaagtgatgagtggataaat----tgtggtatatccataaaataatattccataaaatggaatattattcagcctcaaaaacgaatgaaattttaataaatgctacaatgtgg-cgaacttcaacaacattatgctaagtgaaagaagt--gtcacaaaaggccacatgttatatgattccgtttgtctgaaatttccagaaaaggggagt------agacagaaagtggatcagtggttcccagaggctagcagaagggaaaa---------------aatggagatgggatttctctttcaag---tgatgaaaagattctgga----gatagtggt--gatggttgcagaattttgtgagtacactaaaaactactgaattatattaaaaaggtgaattttattgtttataagttatgt------------tccaGATGCCAATGTCTTTCAGATAGATTAAATGAAATATATTCTCAGCCCTTTGGCTACGATAAAGTGTAGAATAAATGAAATA---TTTCCCACACAAAGAAGACCTCATTAACTCA----GTAGTAAAATGattttttt i canFam3.chr1 I 305 I 203 a score=1462985.000000 s hg38.chr9_GL383541v1_alt 80943 378 + 171286 TAAGTAAAAAGAAC----TCACAGATTTATTCTAGAATAGCAATTTTCTTAGTGACAAGGCAGGGAAAGGCAACATCCTTG-AC-ATTAATATCTTCCTCATCCTAT----ATT---TTCTAAAACTTCTTCAAAATATACCGTGTTCCTTCTAGTTCAATTTAGCTATAACGTGACCAC-AAAATATACCCCTACACTGAAGCCACAAGcagag--ataacaagtagtttcaactcaagtgccaactcagattgattggtagtggttacatgcagcactatgtttagaaggattctaaggctgtatccagagcaggcctg-gaaaacgtagtgattaattTAGAAAATTAGTCTTGAAGTTGGCAGT-GATAGTGGAGGTGGGCGGTGCTTGGGC s panTro4.chr9 68646597 378 + 137840987 TAAGTAAAAAGAAC----TCACACATTTATTCTAGAATAGCAATTTTCTTAGTGACAAGGCAGGGAAAGGCAACATCCTTG-AC-ATTAATATCTTCCTCATCCTAT----ATT---TTCTAAAACTTCTTCAAAATATATCGTGTTCCTTCTAGTTCAATTTAGCTATAACGTGACCAC-AAAATATACCCCTACACTGAAGCCACAAGcagag--aaaacaagtagtttcaactcaagtgccaactcagattgattggtagtggttacatggagcactatgtttagaaggattctaaggctgtatccagagcaggcctg-gaaaatgtagtgattaattTAGAAAATTAGTCTTAAAGTTGGCAGT-GATAGTGGAGGTGGGCGGTGCTTGGGC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64801750 378 + 135191526 TAAGTAAAAAGAAC----TCACATATTTATTCTAGAATAGCAATTTTCTTAGTGACAAGGCAGGGAAAGGCAACATCCTTG-AC-ATTAATATCTTCCTCATCCTAT----GTT---TTCTAAAACTTCTTCAAAATATACCATGTTCCTTCTAGTTCAATTTAGCTATAACATGACCAC-AAAATATACCCCTACACTGAAGCCACAAGcagag--ataacaagtagtttcaactcaagggccaactcagattgattggtagtggttacatggagcactatgtttaggaggattctaaggctgtatccagagcaggcctg-gaaaatgtagtgattaattTAGAAAATTAGTCTTGAAGTTGGCAGT-GATAGTGGAGGTGGGCGGTGCTTGGGC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57838782 378 - 122973662 TAAGTAAAAAGAAC----TCACACATTTATTCTAGAATAGCAATTTTCTTAGTGACAAGGCAGGGAAAGGCAACATCCTTG-AC-ATTAATATCTTCCTCATCCTAT----ATT---TTCTAAAACTTCTTCAAAATATACCATGTTCCTTCTAGTTCAAATTAGCTATAATGTGACCAC-AAAATATACCCCTACACTGAAGCCACAAAcagag--ataacaagtagtttcaactcaagtgccaactcagattgattggtagtggttacatggagcactatgtttagaaggattctaaggctgtatctggagcaggcctg-gaaaatgtagtgattaattTAGAAAATTAGTCTTGAAGTTGGCAGT-GATAGTGGAGGTGGGCGGTGCTTGGGC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79771784 377 + 112192347 TAAGTAAAAAGAAC----TCA-ACATTTATTCTAGAATAGCAATTTTCTTAGTGACAAGGCAGGGAAAGGCAACATCCTTG-AC-ATTAATATCTTCCTCATCCTAT----ATT---TTCTAAAACTTCTTCAAAACATGCCATGTTCCTTCTAGTTCAATTTAGCTATAACATGACAAC-AAAATATACCCCTACACTGAAGCCACAAGcagag--ataacaagtagtttcaactgaagtgccaactcagattgattggcagtggctacatggagcactatatttagaagggttccaaggctgtatccagagcaggcctg-gaaaatgtagtgattaattTAGAAAATTAGTCTTGAAGTTGGCAGT-GATAGTGGAGGTGGGCGGCGCTTGGGC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80852011 377 + 112612857 TAAGTAAAAAGAAC----TCA-ACATTTATTCTAGAATAGCAATTTTCTTAGTGACAAGGCAGGGAAAGGCAACATCCTTG-AC-ATTAATATCTTCCTCATCCTAT----ATT---TTCTAAAACTTCTTCAAAACATGCCATGTTCCTTCTAGTTCAATTTAGCTATAACATGACAAC-AAAATATACCCCTACACTGAAGCCACAAGcagag--ataacaagtagtttcaactgaagtgccaactcagattgattggcagtggctacatggagcactatatttagaagggttccaaggctgtatccagagcaggcctg-gaaaatgtagtgattaattTAGAAAATTAGTCTTGAAGTTGGCAGT-GATAGTGGAGGTGGGCGGCGCTTGGGC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76901070 378 + 107442819 taagtaaaaagaac----tCA-ACATTTATTCTAGAATAGCAATTTTCTTAGTGACAAGGCAGGGAAAGGCAACATCCTTGAAC-ATTAATATCTTCCTCATcctat----att---ttctaaaacttctTCAAAATATGCCATGTTCCTTCTAGTTCAATTTAGCTATAACATGACCAC-AAAATATACCCCTACACTGAAGCCACAAGCAGAG--ATAACAAGTAGTTTCAACTGAAGTGCCAGCTCAGATTGATTGGCAGTGGCTACATGGAGCACTATATTTAGAAGGGTTCCAAGGCTGTATCCAGAGCAGGCCTG-GAAAATGTAGtgattaatttagaaaattagtCTTGAAGTTGGCAGT-GATAGTGGAGGTGGGCGGCGCTTGGGC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81164484 377 + 108555830 TAAGTAAAAAGAAC----TCA-ACATTTATTCTAGAATAGCAATTTTCTTAGTGACAAGGCAGGGAAAGGCAACATCCTTG-AC-ATTAATATCTTCCTCATCCTAT----ATT---TTCTAAAACTTCTTCAAAACGTGCCATGTTCCTTCTAGTTCAATTTAGCTATAACATGACAAC-AAAATATACCCCTACACTGAAGCCACAAGcagag--ataacaagtagtttcaactgaagtgccaactcagattgattggcagtggctacatggagcactatatttagaagggttccaaggctgtatccagagcaggtctg-gaaaatgtagtgattaattTAGAAAATTAGTCTTGAAGTTGGCGGT-GATAGTGGAGGTGGGCGGCGCTTGAGC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111399125 378 - 210400635 TAAGTAAAAAGAAC----TCACACATTGATTCTAGAATAGCAATTTTATTAGTGACAAGGCAGGGAAAGGCAACATCCTTG-AC-ATCAATATCTTCCTCATCCTAT----ATT---TTATAAAACTCCTTCAAAATATACCATGTTCCTTCTAGTTCAATCTAGCTATAACATGACCAC-AAAATATATCCTTACACGGAAGCCACAAGTaggg--ataacaagttgtttcaagtcaagtgccaactcagattgattggtagcaggtatgtggagcactatggttagaaggattctaaggcagtatccagatcaggcttg-aaagatgtagtggttaattTAGAAAATTCGTCTTGAAGTTGGCAGT-GATAGTGGAGGTGGGCTGTGCTTGGGC i calJac3.chr1 C 0 I 111 s mm10.chr19 38048768 358 - 61431566 TAA-TAAAGCAGGC----TCT---------------ACAGGAATTTTACTAGTTAT--GGCACAGAGAAGCCA----CTTT-AT-AGCCATCTCTTGCTCATTCTAT----ATTCAATTTTACAAATC--TCTAAATATATCATGTTCCTTCTAGTTTAATTTAGCTGTAGCATGACCACAAAAATACAGTGTTGCTTTGAAATCCCAAGTAGCG--GTTACAACCAGCTTCAGTCCAAGAGCCCGCTCAACCTAattagtaacagctccatggggctctgtgtttacagagatcctgaggctggctccaggctgggtatg-aaaagtgGACTCAGAGATTCAGAGCAGTGATCTTAGACTAGGCAGTGGGTAGATAAGGTAGG-AACATTTGAGT i mm10.chr19 C 0 C 0 s canFam3.chr1 35288307 385 - 122678785 GAAGAAACAAAAACATTATCA---ATTTGTTCTAGAAGAGCAGTTTTATTAATGATAGTTCAGGGAGGGGCACCAGCCCTG-ATAATTAATATCTACCTCATTCTTTCTTCATT---TTCTAAAACTTCTTCAAAACTTACCATGTTCCTTCTAGTCCAATTTAGCTCTAACATGACTGC-GGAATATACTCTGATACTGAAGCCACAAGCAAGGCTAAAACAAACggtttcaactcaagttctaactcaaattgattggtagtggctacatggaacac--tgtttagaaggattctgaggctatattcagacaaggcaggaaaaaaagtagtaattaattaagaaaatctgccttgagcTTGACAGT-GATAGTGGAGGTGGGCAGTGCTTGGGC i canFam3.chr1 I 203 C 0 a score=64510.000000 s hg38.chr9_GL383541v1_alt 81321 18 + 171286 TAATGATTAGGTCTAGGA s panTro4.chr9 68646975 18 + 137840987 TAATGATTAGGTCTAGGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64802128 18 + 135191526 TAATGATTAGGTCTAGGA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57839160 18 - 122973662 TAATGATTAGGTCTAGGA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79772161 18 + 112192347 TAATGATTAGGTCTAGGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80852388 18 + 112612857 TAATGATTAGGTCTAGGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76901448 18 + 107442819 TAATGATTAGGTCCAGGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81164861 18 + 108555830 TAATAATTAGGTCTAGGA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111399614 18 - 210400635 TAGTGATTTGGTCTAGGA i calJac3.chr1 I 111 C 0 s mm10.chr19 38049126 18 - 61431566 TGGTTAATTAAGCTAGGA i mm10.chr19 C 0 C 0 s canFam3.chr1 35288692 18 - 122678785 TAGTTCTTTGATCAGGGA i canFam3.chr1 C 0 C 0 a score=330628.000000 s hg38.chr9_GL383541v1_alt 81339 126 + 171286 AAATGCATCATTCTGCTGAGTGGATTGCATCCAATCAGCTGGGTAGATACATCTTTGCATGGACTGTAATGCTGCTAAGAG------GCACGTTCACATGGCGTGACCTAAAAACAAATATGAGATCTTTAA s ponAbe2.chr9 64802146 126 + 135191526 AAATGCATCATTCTGCTGAGTGGATTGCATCCAATCACCTGGGTAGATACATCTTTGCATGGACTGTAATGCAGCTAAGAG------GCCAGTTCACATGGCGTGACCTAAAAACAAATATGAGATCTTTAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57839178 126 - 122973662 AAATGCATCATTCTGCTGGCTGGATTGCATCCAGTCAGCTGGGTAGATACCTCTTTGCATGGACTGTAATGCAACTAAGAG------GCACGTTCACATGGCGTGACCTAAAAACAAATATGAGATCTTTAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79772179 126 + 112192347 AAATGCATCATTCTGCTGAGTGCATTGCATCCAATCAGCTGGGTAGACACATCTTTGCTTGGACTGTAATGCAGCTAATAG------GCACATTCACATGGCGTGACCTAAAAACAAATATGAGATCTTTAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80852406 126 + 112612857 AAATGCATCATTCTGCTGAGTGCATTGCATCCAATCAGCTGGGTAGATACATCTTTGCTTGGACTGTAATGCAGCTAATAG------GCACATTCACATGGCGTGACCTAAAAACAAATATGAGATCTTTAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76901466 126 + 107442819 AAATGCATCATTCTGCTGAGTGCATTGCATCCAATCAGCTGGGTAGATACATCTTTGCTTGGACTGTAATGCAGCTAATAG------GCACGTTCACATGGCGTGACCTAAAAACAAATATgagatatttaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81164879 121 + 108555830 AAATCCATCATTCTGCTGAGTGGATTGCATCCAATCAGCTGAGTAGATACATCTTTGCTTGGACTGTAATGCAGCTAATAG------GCACGTTCACATGGCGTGACCTAAAAACAAATATGAGATC----- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111399632 122 - 210400635 AAGTGTATCATTCTGCTGAGTGGATTGCATCCAGTCAGCTGGGTAGATATATCTTTGCATGGACTGTAATGCAGCTAATAA------GCACATCCACATGGCATGACATAAAAGAAAA----AGATCGTTAA i calJac3.chr1 C 0 I 5 s mm10.chr19 38049144 107 - 61431566 CAATGCTT--------------------ATCTA-TCTGCTAGGTAGATAAGCCTGAGAACACACTCTGATACAACTAGTAGCCATATTCATGTTCATACAGCATGACCCAGAACTGAACTGGAGATCT---- i mm10.chr19 C 0 C 0 s canFam3.chr1 35288710 110 - 122678785 AAATGTATTATTCTGCAA--------------AATCAGTTAGGGAGCTAAATCT--GGATGGATTATAATGCAGCTAATAG------GCACGCTCACACAGCATGACCTGAAAATAAATTTGAAGTCTTCAG i canFam3.chr1 C 0 C 0 e panTro4.chr9 68646993 0 + 137840987 C a score=11514.000000 s hg38.chr9_GL383541v1_alt 81465 10 + 171286 TTTAAATGCA s ponAbe2.chr9 64802272 5 + 135191526 -----ATGCA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57839304 10 - 122973662 TTTAAATGCA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79772305 10 + 112192347 TTTAAATACA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80852532 10 + 112612857 TTTAAATACA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76901592 10 + 107442819 tttaaatgca i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81165000 10 + 108555830 TTTAAATGCA i chlSab2.chr12 C 0 C 0 s mm10.chr19 38049251 1 - 61431566 -------G-- i mm10.chr19 C 0 C 0 s canFam3.chr1 35288820 10 - 122678785 TTTACGTGAA i canFam3.chr1 C 0 C 0 e calJac3.chr1 111399754 5 - 210400635 I e panTro4.chr9 68646993 0 + 137840987 C a score=323399.000000 s hg38.chr9_GL383541v1_alt 81475 103 + 171286 AAATTCCAATATTTTAAAATAACCCACATTTATGGCTAAGATGTCAAAA-TCACTCAATGAATAGCACCGACTTTCATCACACAGAATAAAATCTAGGTATTTT s ponAbe2.chr9 64802277 103 + 135191526 AAATTCCAATATTTTAAAATAACCCACATTTATGGCTAAGATGTCAAAA-TCACTCAATGAATAGCACCGACTTTCATCACACAGAATAAAATCTAGGTATTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57839314 103 - 122973662 AAATTCCAATATTTTAAAATAACCCACATTTATGGCTAAGATGTCAAAA-TCACTCAATGAATAGCACTGACTTTCATCACACAGAATAAAATCTAGATATTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79772315 103 + 112192347 AAATTCCAATATTTTAAAATAACTCACATTTATGGCTAAGATGTCAAAA-TCACTCAATGAATAGCACCAACTTTCATCACACAGAATAAAATCTAGGTATTTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80852542 103 + 112612857 AAATTCCAATATTTTAAAATAACTCACATTTATGGCTAAGATGTCAAAA-TCACTCAATGAATAGCACCAACTTTCATCACACAGAATAAAATCTAGGTATTTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76901602 99 + 107442819 aaattccaatatttaaaaataactcacaTTTATGGCTAAGATGTCAAAA-----TCAATGAATAGCACCAACTTTCATCACACAGAATAAAATCTAGGTATTTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81165010 103 + 108555830 AAATTCTAATATTTTAAAATAACTCACATTTATGGCTAAGATGTCAAAA-TCACTCAATGAATAGCACCAACTTTCATCACACAGAATAAAATCTAGTTATTTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111399759 103 - 210400635 AAATTCCAGTATTTTAAAATAACCCATGTTTGTGGCTAAGATGTCAAAA-TCACTCAGCAAATAGCACCAACTCTCATTACACAGAATAAAATCTAGGTATTTT i calJac3.chr1 I 5 C 0 s mm10.chr19 38049252 102 - 61431566 GAATCTCAACATGTTGAAACAGTCAGTATTTATGGATGACATGTCAAAAATCCCTCAATAAATAGCACCAACTGTT-TCATA-AATTTGATACCAAGGTATTTT i mm10.chr19 C 0 C 0 s canFam3.chr1 35288830 100 - 122678785 AAATCCCAATATTTTGAAATAGCCAACACTTATGGCTGAGGTATCAAGA-TCTCTCAATAAATAGCACCAACTTTCAT---ACCGTATACTATTGAGATATTTT i canFam3.chr1 C 0 C 0 e panTro4.chr9 68646993 0 + 137840987 C a score=90973.000000 s hg38.chr9_GL383541v1_alt 81578 25 + 171286 AAATAGTACATTTTATATAGTGTGT s panTro4.chr9 68646993 25 + 137840987 AAATAGTACATTTTATATAGTGTGT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64802380 25 + 135191526 AAATAGTACATTTTATATAGTGTGT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57839417 25 - 122973662 AAATAGTACATTTTATATAGTGTGT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79772418 25 + 112192347 AAATAGTACATTTTATATAGTGTGT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80852645 25 + 112612857 AAATAGTACATTTTATATAGTGTGT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76901701 25 + 107442819 AAATAGTACATTTTATATAGTGTGT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81165113 25 + 108555830 AAATAGTACATTTTATACAGTGTGT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111399862 25 - 210400635 AAATAGCACATTTTATATAGTGTGT i calJac3.chr1 C 0 C 0 s mm10.chr19 38049354 18 - 61431566 GAATAATACAATATATGC------- i mm10.chr19 C 0 C 0 s canFam3.chr1 35288930 24 - 122678785 AAGTAAGACATTTT-TATAGTATGG i canFam3.chr1 C 0 I 219 a score=296729.000000 s hg38.chr9_GL383541v1_alt 81603 78 + 171286 GCTCTCAAAGGTTCTTGACAAGAGAACATTAGCATAAGCTTATAGTAAAATCTGATCAGGTGAGAGAGAATGTCAAGA s panTro4.chr9 68647018 78 + 137840987 GCTCTCAAAGGTTCTTGACAAGAGAACATTAGCATAAGCTTATAGTAAAATCTGATCAGGTGAGAGAGAATGTCAAGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64802405 78 + 135191526 GCTCTCAAAGGTTCTTGACAAGAGAACATTAGCATAAGCTTATAGTAAAATCTGATCAGGTGAGAGAGAATGTCAAGA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57839442 78 - 122973662 GCTCTCAAAGGTTCTTGACAAGAGAACATTAGCATAAGCTTATAGTAAAATCTCATCAGGTGGGAGAGAACGTCAAGA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79772443 76 + 112192347 GCTCTCAAAGGTTCTTGACAAGAGAACATTAGCATACGCTTATAGCAAAATCTGATCAGGT--GAGAGAATATCAAGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80852670 76 + 112612857 GCTCTCAAAGGTTCTTGACAAGAGAACATTAGCATACGCTTATAGCAAAATCTGATCAGGT--GAGAGAATATCAAGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76901726 78 + 107442819 GCTCTCAAAGGCTCTTGACAAGAGAACATTAGCATATGCTTATAGCAAAATCTGATCAGGTGAGAGAGAATATCAAGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81165138 78 + 108555830 GCTCTCAAAGGTTCTTGACAAGAGAACATTAGCATACGCTTATAGCAAAATCTGATCAGGTGAGAGAGAATATCAAGA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111399887 75 - 210400635 GC-CTCAAAGGTTCTTGACAAGAGGACATTAGC--AAGCTTATAGTAAAATCTGATTTAGTGAGAGAGAATGTCAAGA i calJac3.chr1 C 0 C 0 s mm10.chr19 38049372 72 - 61431566 ---TTCAAAGGCTCTTAACAAGCAATCATTAGCATATGCTTACAAGGATAT---ACTAAGTGAGAAAGAATATCTAGA i mm10.chr19 C 0 I 532 s canFam3.chr1 35289173 78 - 122678785 GCTCTCCAAGGTTCTTAATATGATAGTATTAGCATATGCTTATAATCGAATCTGATATAGTGAGAGATTATGTCAAGA i canFam3.chr1 I 219 C 0 a score=6669.000000 s hg38.chr9_GL383541v1_alt 81681 2 + 171286 GA s panTro4.chr9 68647096 2 + 137840987 GA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64802483 2 + 135191526 TA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57839520 2 - 122973662 GA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79772519 2 + 112192347 GA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80852746 2 + 112612857 GA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76901804 2 + 107442819 GA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81165216 2 + 108555830 GA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111399962 2 - 210400635 GA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35289251 2 - 122678785 GA i canFam3.chr1 C 0 I 356 e mm10.chr19 38049444 532 - 61431566 I a score=42292.000000 s hg38.chr9_GL383541v1_alt 81683 14 + 171286 ATTTTTTTATGGCA s panTro4.chr9 68647098 14 + 137840987 ATTTTTTTATGGCA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64802485 14 + 135191526 ATTTTTTTATGGCA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57839522 14 - 122973662 ATTTTTTTATGGCA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79772521 13 + 112192347 A-TTTTTTATGGCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80852748 13 + 112612857 A-TTTTTTATGGCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76901806 13 + 107442819 A-TTTTTTATGGCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81165218 13 + 108555830 A-TTTTTTATGACA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111399964 14 - 210400635 ATTTTTTTATGGCA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35289609 14 - 122678785 ATTTTTCTATGACA i canFam3.chr1 I 356 C 0 e mm10.chr19 38049444 532 - 61431566 I a score=723399.000000 s hg38.chr9_GL383541v1_alt 81697 231 + 171286 CTCACTGAAAAGCCAAGATAATCACCAGCAGATGGACTCTGTGCACCTGCTT------------------------------------------------------------------------------------TAACACACA-TTCACTTAAATTCGAGTTGTACCTTCCAGCAGAACCGTTGCCTACCTCCTTTACATGCTACAGGAGCC-----TGCACTTTCTTTGGTAGATGAG------------------AGGTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGAATGAACCCTATTTACCTGTCCATACATTGTAAGTcagcagttctcaa-----------agaccagtagcaacagtatc s panTro4.chr9 68647112 231 + 137840987 CTCACTGAAAAGCCAAGATAATCACCAGCAGATGGACTCTGTGCACCTGCTT------------------------------------------------------------------------------------TAACACACA-TTCACTTAAATTCGAGTTGTACCTTCCAGCAGAACCGTTGCCTGCCTCCTTTACATGCTACAGGAGCC-----TGCACTTTCTTTGGTAGATGAG------------------AGGTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGAATGAACCCTATTTACCTGTCCATACATTGTAAGTGagcagttctcaa-----------agaccagtagcaacagtatc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64802499 231 + 135191526 CTCACTGAAAAGCCAAGATAATCACCAGCAGATGGACTCTGTGCACCTGCTT------------------------------------------------------------------------------------TAACACACA-TTCACTTAAATTTGAGTTGTACCTTCCAGCAGAACTGTTGCCTGCCTCCTTTACATGCTACAGGAGCC-----TGCACTTTCTTTGGTAGATCAG------------------AGGTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGAATGAACTCTATTTACCTGTCCATACACTGTAAGTcagcagttctcaa-----------agaccagtagcatcagtatc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57839536 231 - 122973662 CTCACTGAAAAGCCAAGATAATCACCAGCAGATGGACTCTGTGCACCTGCTT------------------------------------------------------------------------------------TAACACACA-TTCACTTAAATTTGAGTTGTACCTTCCAGCAGAACTGTTGCCTGCCTCCTTTACATGCTACAGGAGCC-----TGCACTTTCTTTGGTAGATGAG------------------AGGTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGAATGAACCCTATTTACCTGTCCATACATTGTAAGTcaacagttctcaa-----------agaccagtagcatcagtatc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79772534 314 + 112192347 CTCACTGAAAAGCCAAGAAAATCACTGGCAGATGGACTCTGTGCACCTGCTGTAACACACATTCACTTAAATTTGCGTTGTACCTTGCAGCAGAACTGTTGCCTCCAACTGGCAGATGGACTCTGTGCACCTGCTCTAACACACA-TTCACTTAAATTTGTGTTGTACCTTCCAGCAGAACTGTTGCCTCCGTCCTTTACGTGCCACAGGAGCC-----TGCACTTTCTTTGGTAGATGAG------------------AGGTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGAATGAACCCTATTTACCTGT-CATACATTGTAAGTCAGCAGCTCTCAA-----------Agaccagtagcatcagcatc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80852761 230 + 112612857 CTCACTGAAAAGCCAAGAAAATCACTGGCAGATGGACTCTGTGCACCTGCTG------------------------------------------------------------------------------------TAACACACA-TTCACTTAAATTTGCGTTGTACCTTCCAGCAGAACTGTTGCCTCCGTCCTTTACGTGCCACAGGAGCC-----TGCACTTTCTTTGGTAGATGAG------------------AGGTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGAATGAACCCTATTTACCTGT-CATACATTGTAAGTCAGCAGCTCTCAA-----------Agaccagtagcatcagcatc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76901819 230 + 107442819 CTCACTGAAAAGCCAAGAAAATCACCGGCAGATGGACTCTGTGCACCTGCTG------------------------------------------------------------------------------------TAACACACA-TTCACTTAAATGGGCGTTGTACCTTCCAGCAGAACTGTTGCCTCCCTCCTTTACGTGCTACAGGAGCC-----TGCACTTTCTTTGGTAGATGAG------------------AGGTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGAATGAACCCTATTTACCTGT-CATACATTGTAAGTCAGCAGTTCTCAA-----------AGACCAGTAGCATCAGCATC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81165231 228 + 108555830 CTCACTGAAAAGCCAAGCAAATCACCAGCAGATGGACTCTGTGCACCTGCTG------------------------------------------------------------------------------------TAACACACA-TTCACTTCAATTTGAGTTGTACCTTCCAGCAGAAC--TTGCCTCCCTCCTTTACATGCTACAGGAGCC-----TGCACTTTCTTTGGTAGATGAG------------------AGGTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGAATGAACCCTATTTACCTGT-CATACATTGTAAGTCAGCAGTTCTCAA-----------Agaccagtagcatcagcatc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111399978 228 - 210400635 CTCACTGAAGAGTCTAGATACTCACCAGCAACTGGACTCTGTGCACCTGCTG------------------------------------------------------------------------------------TA--ACGCA-TTTACTTACATTCGAGTTATATCCTCCAGCAGAACTGTCTCCTCCCCGCTTTACATACTACAGGAGAC-----TGCACTTTGTTTGGTAGATGAG------------------AGATGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAGAAAGAGCCCTATTTACCTGT-CACACATTGTAAGTcagcagttctcaa-----------agaccaacagcatcagtgtc i calJac3.chr1 C 0 C 0 s mm10.chr19 38049976 195 - 61431566 CTCAGCAAAAAGGACAGATAG-CACCGATTGTTGGCTGATATGAACCTTCTA------------------------------------------------------------------------------------TTACACACA-TTCAGTGACATTTGAGTTCTACTT-------AAAACATCTGATCCCTCTAAAACATGCTAAAGGAACCTATGATGCACTTTCTGTGATAGGCAAA------------------GGGAGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGACAATGAGCCCTATTTCTTTGG--------------------------------------------AGTGGAAGCGGTTCC i mm10.chr19 I 532 C 0 s canFam3.chr1 35289623 440 - 122678785 TTCACAGAAAAATCAAGATAATCACCAGTAGATGGACTCTCTGAGCCTGCTG------------------------------------------------------------------------------------CAGCACACATTTTACTTAATTTTGAGTTTTACCTCCAAGTGGAACTGACTCCTCCCTCCTTTATATGCTACAGTAGCC-----AGCCCTTTCTTTGATAGATAGGTGTCTAAGGggggcacctgggtggctcagtcagttaaacatccaaatcttgattttggctcaggtcatgatctctgggtcatgggatcgagcctcacatcaggcttggggctcagcaggagtctgcttgagattctctccccctcttcttcggtccctccaccctctctataataagtaaataagtcttttataaaaTAAGTATTTAAATAATGAGTCCTATTTCTCTGG-CAGATATTGTAAATCTTtgcttctcaaatgtggtccccagaccagcagcatcagcatc i canFam3.chr1 C 0 C 0 a score=350399.000000 s hg38.chr9_GL383541v1_alt 81928 108 + 171286 acctggaacatccaagaaatgcaatctgttagaaatgcagcatcaccccagctctactggattggaaactcaaggggtgggcctggggatgtgtatttgaacaagata s panTro4.chr9 68647343 108 + 137840987 acctggaacatccaagaaatgcaatctgttagaaatgcagcatcaccccagccctactggattggaaactcaaggggtgggcctggggatgtgtatttgaacaagata i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64802730 108 + 135191526 acctggaacgtctaagaaatgcaatctgttagaaatgcagcatcaccccagccctactggattggaaactcaaggagtgggcctggggaggtgtatttgaacaagata i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57839767 108 - 122973662 acctggaacgtctaagaaatgcaatctgttagaaatgcagcatcaccccagccctactggattggaaactcgaggggtgggcctggggatgtgtatttgaacaagata i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79772848 108 + 112192347 tcctggaatgtctaagaaatgcaatctgttagaaatgcagcatcaccccagccctactggtttggaaactcaaggggtgggcctggagatctgtatttgaacaagatt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80852991 108 + 112612857 tcctggaatgtctaagaaatgcaatctgttagaaatgcagcatcaccccagccctactggtttggaaactcaaggggtgggcctggagatctgtatttgaacaagatt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76902049 108 + 107442819 TCCTGGAACGTCTAAGAAATGCAATCTGTTAGAAATGCAGCAACACCCCAGCCCTACTGGTTTGGAAACTCGAGGGGCGGGCCTGGGGATCTGTATTTGAACAAGATT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81165459 108 + 108555830 tcctggaacgtctaagaaatgcaatctgttagaaatgtagcatcaccccagccctactggattggaaactcgaggggtgggcctggggatctgtatttgaacaagatt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111400206 103 - 210400635 acctggaacttctgagaaatgcagtctgttagaaatgcaacatcactccagccctaatggattggaaactcaa-----tggccaggtgatctgcagttgaacaagatt i calJac3.chr1 C 0 C 0 s canFam3.chr1 35290063 104 - 122678785 acccaaaacttctgagaaatgtagtctgttaagaatgcagcatcacgccagacctacatga-tggcagctcaa-gggtagccccagcaatctgt--ttgaacaggccc i canFam3.chr1 C 0 C 0 e mm10.chr19 38050171 0 - 61431566 C a score=856002.000000 s hg38.chr9_GL383541v1_alt 82036 252 + 171286 tccaggtgactctgggctcaactttaagagcATTG--CTTTGAGTTGTCCCT-TTCTGGAGTGGGGAAAGGAAAAGGGGAGGGAGAGAAAAGGGGAGGCTGGGGAAGTACCCAGGGAAAATTGAGCCTCCCATGGCAGCAAAGTTGGTATTTGATATGAATGTTGATAGGACATAGCAAGGTCTTTATTTGTTTCTTTCCTCTTTTATACTCCATGTCC-AACTCTCTACTTCTTCGGAAAAGGTTTGAGGTACTC s panTro4.chr9 68647451 253 + 137840987 tccaggtgactctgggctcaactttaagagcATTG--CTTTGAGTTGTCCCT-TTCTAGAGTGGGGAAAGGAAAAGGGGAGGGAGAGAAAAGGGGAGGCTGGGGAAGTACCCAGGGAAAATTGAGCCTCCCATGGCAGCAAAGTTGGTATTTGATATGAATGTTGATAGGACATAGCAAGGTCTTTATTTGTTTCTTTCCTCTTTTATACTCCATGTCCCAACTCTCTACTTCTTCAGAAAAGGTTTGAGGTACTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64802838 251 + 135191526 tccagatgactctgggctcaactttaagagcATTG--CTTTGAGTTGTCCCT-TTCTAGAGT-GGGAAAGGAAAAGGGGAAGGAGAGAAAA-GTGAGGCTGGGGAAGTGCCCAGGGAAAATTGAGCCTCCCATGGCAGCAAAGTTCGTATTTGATATGAATGTTGATAGGACATAGCAAGGTCTTTATTTGTTTCTTTCCTCTTTTATACTCCATGTCCCAACTCTCTACTTCCTTGGAAAAGGTTTGAAGTACTC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57839875 249 - 122973662 tccaggtgactctgggctcaactttaagagcATTG--CTTTGAGTTGTCCCT-TTCTAGAATGGGGAAAGAAAAAGGGGAGGGAGACAAAAGGGGAGGCTGGGGAAGTGCCCAGGGAAAATTGAGCCTCCCATGGCAGCAAAGTTGGTATTTGATATGAATGTTGATAGGACATAGCAAGGTC----TTTGTTTCTTTCCTCTTTTATACTCCACGTCCCAACTCTCTACTTCCTTGGAAAAGGTTTGAGGTACTC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79772956 242 + 112192347 tccaggtgactctgggctcaactttaagagcATTG-------------CCCT-TTCTAGAGTGGGGAAAGGAAAAGGGGAGGGAGAAAAAAGGGGAGGCTGGGGAAGTGCCCAGGGAAAATTGAGCCTCCCATAGCAGCAAAGTTGGTATTTGATGTGAATGTTGATAGGACATAGCAAGGTCTTTATTTGTTTTTTTCCTCTTTTATACTCCATGTCCCAACTCTCTATTTCCTCGGAAAAGGTTTGAGGTACTC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80853099 242 + 112612857 tccaggtgactctgggctcaactttaagagcATTG-------------CCCT-TTCTAGAGTGGGGAAAGGAAAAGGGGAGGGAGAAAAAAGGGGAGGCTGGGGAAGTGCCCAGGGAAAATTGAGCCTCCCATGGCAGCAAAGTTGGTATTTGATGTGAATGTTGATAGGACATAGCAAGGTCTTTATTTGTTTTTTTCCTCTTTTATACTCCATGTCCCAACTCTCTATTTCCTCGGAAAAGGTTTGAGGTACTC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76902157 242 + 107442819 TCCAGGTGACTCTGGGCTCAACTTTAAGAGCATTG-------------CCCT-TTCtacagtggggaaaggaaaaggggagggagagaaaaggggaggctggggaagtgcccagggaaaaTTGAGCCTCCCATGGCAGCAAAGTTGGTATTTGATGTGAATGTTGATAGGACATAGCAAGgtctttatttgtttctttcctcttttatacTCCATGTCCCAACTCTCTATTTCCTCAGAAAAGGTTTGAGGTACTC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81165567 253 + 108555830 tccaggtgactctgggctcaactttaagagcATTG--CTTCAAGTTTTCCCT-TTCTAGAGTGGGGAAAGGAAAAGGGGAGGGAGAGAAAAGGGGAGGCTGGGGAAGTGCCCAGGGAAAATTGAGCCTCCCATGGCAGCAAAGTTGGTATTTGATGTGAATGTTGATAGGACATAGCAAGGTCTTTATTTGTTTCTTTCCTCTTTTATACTCCATGTCCCAACTCTCTATTTCCTCGGAAAAGGTTTGAGGTACTC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111400309 249 - 210400635 tccaggtgactctgggctcaactttaagagcactg--CTTTGAGTTGTCCCT-TTCTAGAGTGGGGAAAGGAAAAAGAGAGGAAGAGAACAGGGGAGGCTGGGGAAGTGCCCAGGGAAAATCGAACCTCCCATGGCAGCAAAGTTAGTGTTTGATGTGAATGTTGATAGGACACAGTGAGGTC----TTTGTTTCTTTCCTCTTTTACACTCCACCTTCCAACTCTCTACTTCCTCAGAAAAGGTTTGAGGTACTC i calJac3.chr1 C 0 C 0 s mm10.chr19 38050171 240 - 61431566 TCCAGATGACTCTAGATACAAACGTGAAAACCTCAAGTCTTGAGCTTTCTCTGCTGTAATGTGGGGA----AAAAGGAGGGAACTAAGGCAGGAGAAACT-GGGAAATGCCCA-GGAGAGCTGAGCCT-CTGGAGCAGCAGCTTTGGGACTTGTCATAGATGCTGGCA-GCCACAGTGCGG----AACTTTCTTCTTTCCTCTCTTATGTTTCGCTTCCCACCTCTTTACTTCTGCAGGAAAAGT----GGCACTC i mm10.chr19 C 0 I 399 s canFam3.chr1 35290167 206 - 122678785 tccaggtcccgatgggctcaagtttgagagccCTT---------CTGTTTCC-TTCTAGAACTCAGAAAAGAAATGGAGAGTG-------------------------------GGAGAATTGAGGCT-GTAGGGTAGCAG-GTTGGCATGGGATGTGAAACTCCACCAGACACAGTGAGG----GGTTTGTTTCTTTCCTTTGGT-TACCCCATGTGTCAACTC--TACTTCCTCAGAAAGGGTTTGAAGTGGTC i canFam3.chr1 C 0 C 0 a score=13900.000000 s hg38.chr9_GL383541v1_alt 82288 7 + 171286 --ACGTGAT s panTro4.chr9 68647704 7 + 137840987 --ACGTGAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64803089 7 + 135191526 --ACGTGAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57840124 7 - 122973662 --ACATGAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79773198 7 + 112192347 --ATGTGAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80853341 7 + 112612857 --ATGTGAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76902399 7 + 107442819 --ATGTGAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81165820 7 + 108555830 --ATGTGAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111400558 7 - 210400635 --ACATGGT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35290373 7 - 122678785 TCAGGAG-- i canFam3.chr1 C 0 C 0 e mm10.chr19 38050411 399 - 61431566 I a score=63389.000000 s hg38.chr9_GL383541v1_alt 82295 18 + 171286 CTCCCCCAAT-------------------CCAGCCTG s panTro4.chr9 68647711 18 + 137840987 CTCCCCCAAT-------------------CCAGCCTG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64803096 18 + 135191526 CTCCCCCAAT-------------------CCGGCCTG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57840131 18 - 122973662 CTCCCCCAAC-------------------CCAGCCTG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79773205 18 + 112192347 CTCCCCCAAT-------------------CCAGCCTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80853348 18 + 112612857 CTCCCCCAAT-------------------CCAGCCTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76902406 18 + 107442819 CTCCCCCAAT-------------------CCAGTCTG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81165827 18 + 108555830 CTCCCCCAAT-------------------CCAGCCTG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111400565 18 - 210400635 CTCCCCCAGT-------------------CCAGCCTG i calJac3.chr1 C 0 I 330 s mm10.chr19 38050810 13 - 61431566 CTTCCCCACT-------------------CCA----- i mm10.chr19 I 399 C 0 s canFam3.chr1 35290380 37 - 122678785 CTCCCTTAGTCACCATGCCCAACCCACTACCGGCCTG i canFam3.chr1 C 0 C 0 a score=5451865.000000 s hg38.chr9_GL383541v1_alt 82313 1588 + 171286 CTTGAAGTCCCTTCTTTTGGGGCAGT---AGCAAAGAGTGGGGAAAG-AGGATGGTGCTAATACAT-TC-CTCATGCCACA-AGAAGCAGCACTTTTT-ATCCA-AAAAGGGTTGGCCTCAAGAGCCCCAGCTTAGAATAGTCAAACCCAACAAGGCCTTCACCTTGGAaa-------tgcacgtgaagcacttagaacagcacttggGCCTGAGTTGCAGTGAGTGTCGCCTGTACGTGGGAGGT-ATGATGGTGTCAGCAATTGCTGCAAGGGCCAGATTTCTCCACAAGGGTGCCTGGGTTGGCATCTAGAAGCAATTGCTATCTGCACCCAGTGGGCGGTTGCTATGTTAAGAAGATTGCCAGGAAGAGTTAGATCTTGATCTTGAAATCCTTCAG-TCGGCAAGAAAGGATCCCTGAAGACAATGCCCTAACTGTGTCCCTCATGTGAGGATGGCCGTCATCTGAGCTCCAGTTAGCCTGTCGGTACTCGCCACGGATATAAGGATCCAGGCTGGGATGGGC-----ATTTGAGACAACAAGCGTGGGAGGACAGGCTGAAGAACATCAAGCAAAACAAAGAGGCTTTTCAGATCCTTTCTCGTAAGAGTTTAGGGTTAGGGAGACCGAAGTGCAGACACAGGGTGGT---GGAAGCCACAGGACGAAAGACAGCAGGTTAAATGACAGCCATGAATGTGGGGCCCTCCGAG-AAAGCATGAGAATCTGC-AGGCCAGAAAGGCCCAGGAGGTCCCCAAAGACCCACAGGCA-ATTGGATCATTGACATAGGAAACCA--GATGGCCAGAGGTGGGTTTGGAAGGCTCGAGTTAAGGTTCTTGGCT----TCAATGCCCCAC--------CAACTTTTATAGAAATGCT-----------------------TTTCATATC-------------------------------------------------------TT-GTACAGCCAGCAGAAAG-CACTTGTCGATATTagga--------gggtagagggagaagggaaggagaatgaacagaggaaaaggaaaggaggaggagaaggacggggaaaggggaataagaagacagaagaga--ggaggaaaaggagaaaggaggaaacagggaatccgaaaggagaagtgaggatagaggagaaggaag-GACAATTGCTAGTCCCAgagtgtccagtgctttcccagccctgtgctacatgttttgcaagtgtttcct-catttatttctcagaacTATG------AAATTTGGTCATGGAAGAGTCAAGGGA--AGGA-AGTCTTATTCCTAATTT----AATAAAAAATAGCTTACAATGTACTTTTTCTGCCTAGGTCCCAAGATCCAGGCTTAGGTAACCAAATCAATTCAGTCTA-C-ATAATGATGCAAGTTAAATGCAGATTGAAACATTAGGTAATGGGGAGAGCTATGTAAGGAGAAGGTTGAGTCCACCCAGTTATTCTGACTTCAG----------T-----CATGCCGCTCTTCT-GATTC--------TGATGTCCCTCAGCCTGCAGAAACATATGCCTATGGGGACCAGGGAGATGAATGCAATGTGCTAAATGGGCCTGGTGTAAAAGAATAAAAAGCAG-AGACAC------TCA-------GTGTGAGgagtgaagagggactgatggcaattatg-------gcaaagtggagaccacatgcca-ccctct--gaagagg-cagcaccactca----gctccagcctgttgtca s panTro4.chr9 68647729 1587 + 137840987 CTTGAAGTCCCTTCTTTTGGGGCAGT---AGCAAAGAGTGGGGAAAG-AGGATGGTGCTAATACAT-TC-CTCATGCCACA-AGAAGCAGCACTTTT--ATCCA-AAAAGGGTTGGCCTCAAGAGCCCCAGCTTAGAATAGTCAAACCCAACAAGGCCTTCACCTTGGAaa-------tgcacgtgaagcacttagaacagcacttggGCCTGAGTTGCAGTGAGTGTCGCCTGTACGTGGGAGGT-ATGGTGGTGTCAGCAATTGCTGCAAGGGCCAGATTTCTCCACAAGGGTGCCTGGGTTGGCATCTAGAAGCAATTGCTATCTGCACCCAGTGGGCGGTTGCTATGTTAAGAAGATTGCCAGCAAGAGTTAGATCTTGATCTTGAAATCCTTCAG-TCGGCAAGAAAGGATCCCTGAAGACAATGCCCTAACTGTGTCCCTCATGTGAGGATGGCCGTCATCTGAGCTCCAGTTAGCCTGTCGGTACTCGCCACGGATATAAGGATCCAGGCTGGGATGGGC-----ATTTGAGACAACAAGCGTGGGAGGACAGGCTGAAGAACATCAAGCAAAACAAAGAGGCTTTTCAGATCCTTTCTAGTAAGAGTTTAGGGTTAGGGAGACCGAAGTGCAGACGCAGCGTGGT---GGAAGCCACAGGACGAAAGACAGCAGGTTAAATGACAGCCATGAATGTGGGGCCCTCCGAG-AAAGCATGAGAATCTGC-AGGCCAGAAAGGCCCAGGAGGTCCCCAAAGACCCACAGGCA-ATTGGATCATTGACATAGGAAACCA--GATGGCCAGAGGTGGGTTTGGAAGGCTCGAGTTAAGGTTCTTGGCT----TCAATGCCCCAC--------CAACTTTTATAGAAATGCT-----------------------TTTCATATC-------------------------------------------------------TT-GTACAGCCAGCAGAAAG-CACTTGTCAATATTAGGA--------GGGTGgagggagaagggaaggagaatgaacagaggaaaaggaaaggaggaggagaaggatggggaaaggggaataagaagacagaagaga--ggaggagaaggagaaAGGAGGAAGCAGGGAATCCGAAAGGAGAAGTGAGGATAGAGGAGAAGGAAG-GACGATTGCTAGTCCCAgagtgtccagtgctttcccagccctgtgctacatgttttgcaagtgtttcct-catttatttctcagaacTATG------AAATTTGGTCATGGAAGAGTCAAGGGA--AGGA-AGTCTTATTCCTAATTT----AATAAAAAATAGCTTACAATGTACTTTTTCTGCCTAGGTCCCAAGATCCAGGCTTAGGTAACCAAATCAATTCAGTCTA-C-ATAATGATGCAAGTTAAATGCAGATTGAAACATTAGGTAATGGGGAGAGCTATGTAAGGAGAAGGTTGAGTCCACCCAGTTATTCTGACTTCAG----------T-----CATGCCGCTCTTCT-GATTC--------TGATGTCCCTCAGCCTGcagacacatatgcctatggggaccagggagatgaatgcaatgtgctaaatgggcctggtgtaaaagaataaaaagCAG-AGACAC------TCA-------GTGTGAGgagtgaagagggactgatggcaattatg-------gcaaagtggagaccacatgcca-ccctct--gaagagg-cagcaccactca----gctccagcctgttgtca i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64803114 1588 + 135191526 CTTAAAGTCCCTTCTTTTGGGGCAGT---AGCAAAGAGTGGGGAAAG-AGGATGGCGCTAATACAT-TC-CTCATGCCACA-AGAAGCAGCACTTTT--ATCCA-AAAAGGGTTCGCCTCAAGAGCCCCAGCTTAGAATAGTCAAACCCAACAAGCCCTTCACCTTGGAAA-------TGCACATGAAGCACTTAGAATAGCACTTGGGCCTGAGTTGCAATGAGTGTTGCCTGTACGTGGGAGGT-ATGGTGGTGTCAGCAATTGCTGCAAGGGCCAGATTTCTTCAC-AGGGTGCCTGGGTTGGCATCTAGAAGCAATTGCTATCCGCACCCAGTGGGCAGCTGCTATGTTAAGAAGATTGCCAGCAAGAGTTAGATCTTGATCTTGAAATCCTTCAG-TCGGCAAGAAAGGATCCCTGAAGACAATGCCCTAACTGTGTCCCTCATGTGAGGATGGCCGTCATCTGAGCTCCAGTTAGCCTGTCGGTACTCGCCACAGAGATAAGGATCCAGGCTGGGATGGGC-----ATTTGAGACAATAAGCGTGGGAGGACAGGCTGAAGAACATCAAGCAAAACAAAGAGGATTTTCAGATCCTTTGTAGTAAGAGTTTAGAGTTAGGGAGACCGAAGTGCAGACACAGGGAGGT---GGAAGCCACAGGATGAAAGACAGCAGGTTAAATGACAGCCATGAATGTGGGGCCCTCCGAG-AAAGCGTGAGAATCTGC-AGGCCAGAAAGGCCCAGGAGGTCCCCAAAGACCCACAGGCA-ATTGGATCATTGATATAGGAAACCA--GATGGTCAGAGGGGGGTTTGGAAGGCTCGAGTTAAGGTTCTTGGCT----TCAATGCCCCAC--------CTTTTTTTACAGAAATGCT-----------------------TTTCACATC-------------------------------------------------------TT-GTACAGCCAGCAGAAAG-CACTTGTCAATATTAGGA--------GGGTagagggagaagggaaggagaatgaacagaggaaaaggaaaggaggaggagaaggacagggaaaggggaataagaagacagaagaga--ggaggagaaagagaaAGGAGGAAAGAGGGAATCCGAAAGGAGAAGTGAGGATAGAGGAGAAGGAAG-GACGACTTCTAGTCCCAgagtgtccagtgctttcccagccctgtgctacatgttttgcaagtgtttcct-catttagttctcagaacTATG------AAATTTGGTCATGGAAGAGTCAAGGGA--AGGA-AGTCTTATTCCtaatttaaaaaaaaaaaaataGCTTACAATGTACTTTTTCTGCCTAGGTCCCAAGATCCAGGCTTAGGTAACCAAATCAATTCAGTCTA-C-ATAATGATGCAAGTTAAATGCAGATTGAAACATTAGGTAATGGGGAGAGCTATGTAAGGAGAAGGTTGAGTCCACCTAGTTATTCTGACTT--G----------T-----CATGCCGCTTTTCT-GATTC--------TGATGTCCCTCAGCCTGcagacacatatgcctatggggaccagggagatgaatgcaatgtgctaaatgggcctggtgtaaaagaataaaaagCAG-AGACAC------TCA-------GTGTGAGGAGTGaagagggagtgatggcaattatg-------gcaaagtggagaccacatgcca-ccctct--gaagagg-cagcaccactca----gctccagcctgttgtca i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57840149 1586 - 122973662 CTTGAAGTCCCTTCTTTTGGGGCAGT---AGCAAAGAGTGGGGAAAG-AGGATGGCGCTAATACAT-TC-CTCATGCCACA-AGAAGCAGCACTTTA--TCCAA-AAAAGGGTTGACCTCAAGAGCCCCAGCTTAGAATAGTCAAACCCAACAAGCCCTTCACCTCGGAaa-------tgcgtgtgaagcacttagaacagcacttggGCCTGAGTTGCAGTGATTGTCGCCTGTACGTGGGAGGT-ATGGTAGTGGCAGCAATTGCTGCAAGGGCCAGATTTCTCCACAAGGGTGCCTGGGTTGGCATCTGGAAGCAATTGCTATCTGCACCCAGTGGGCGGTTGCTATGTTAAGAAGATTGCCAGCAAGAGTTAGATCTTGATCTTGAAATCCTTCAG-TCAGCAAGAAAGGATCCCTGAAGACAATGCCCTAACTGTGTCCCTCATGTGAGGATGGCTGTCATCTGAGCTCCGGTTAGCCTGTCGGTAGTCGCCACAGAGATAAGGATCCAGGCTGGGATGGGC-----ATTTGAGACAACAAGCGTGGGAGGACAGGCTGAAGAACATCAAGCAAAACAAAGAGGCTTTTCAGATCCTTTCTAGTAAGAGTTTACGGTTAGAGAGACTGAAGTGCAGACACAGGGAGGT---GGAAGCCACAGGATGAAAGACAGCAGGTTAAATGACAGCCATGAATGTGGGGCCCTCCGAG-AAAGCATGAGAATCTGC-AGGCCAGAAAGGCCCAGGAGGTCCCCAAAGACCCACAGGCA-ATTGGATCATTGATATAGGAAACCA--GATGGCCAGAGGTGGGTTTGGAAGGCTCGAGTTAAGGTTCTTGGCT----TCAATGCCCCAC--------CTTTTTTTATAGAAATGCT-----------------------TTTCACATC-------------------------------------------------------CT-GTACAGCCAGCAGAAAG-AACTTGTCAATATTAGga--------gggtagagggagaagggaaggagaatgaacagaggaaaaggaaaggaggagg---aggacggagaaaggggaataagaacacagaagaga--ggaggagaaggagaaaggaggaaagagggaATCCGAAAGGAGAAGTGAGGATA---GAGAAGGAAG-GACAATTGCTAGTCCCAgagtgtccagtgctttcccagccctgtgctacatgttttgcaagtgtttcct-catttagttctcagaacTATG------AAATCTGGTCATGGAAGAGTCAAGGGA--AGGA-AGTCTTATTCCTAATTT-AAAAAAAAAAAATAGCTTACAATGTACTTTTTCTGCCTAGGTCCCAAGATCCAGGCTTAGGTAACCAAATCAATTCAGTCTA-C-ATAATGATGCAAGTTAAATGCAGATTGAAACATTAGGTAATGGGGAGAGCTATGTAAGGAGAAGGTTGAGTCCACCTAGTTATTCTGACTTCAG----------T-----CATGCCGCTCTTCT-GATTC--------TGATGTCCCTCAGCCTGCAGACACATATGCCTGTGGGGACCAGGGAGATTAATGCAATGTGCTAAATGGGCCTGGTGTAAAAGAATAAAAAGCAG-AGACAC------TCA-------GTGTCAGGAGTGaagagggagtgatggcaattatg-------gcaaagtggagaccacttgccacccctct--gaagaggacagcaccactca----gctccagcctgttgtca i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79773223 1634 + 112192347 CTTGAAGTCCCTTCTTTTGGGACAGT---AGCAAAGAGTGGGGAAAG-AGGATGGCACTAATACAT-TC-CTCACGCCACA-AGAAGCGGCACTTTT--ATCCA-AAAAGGGTTGGCCTCAAGAGCCCTGGCTTAGAATAGTCAAACCCAACAAGCCTTTCACCTCGGAAA-------TGCGCGTGAAGCACTTAGAACAGTAGTTGGGCCTGGGTTGCAGTGAGTGTTGCCTATATGTGGGAGGT-ATGGTAGTGGCAGCAATCGCTGCAAGGGCCAGATTTCTCCACAAGGGTGCCTGGGTTGGCATCTGGAAGCAATTGCTATCTGCACCCAGTGGGTGGTTGCTATGTTAAGAAGATTGCCAGCAAGAGTTAGATCTTGATCTTGAAACCCTTCAG-TTGGCAAGCAAGGATCCCTGAAGACAGTGCCCTAACTGTGTCCCTCATGTGAGGATGGCCGTCATCTGAGCTCCAGTTGGCCTGTCAGTACTCGCCACAGAGATAAGGATCCAGGCTGGGATGGGC-----ATTTGAGACAACAAGCGTGGGAGGACAGGCT-AAGAACATCAAGCAAAACAAAGAGGCTTTTCAGATCCTTTCTAGTAAGAGTTTAGGGTTAGGGAGACTGAACTGCAGACACAGGGAGGG---GGAAGCCACAGGATGAAAGACAGCAGGTTTAATGACAGCCATGAATGTGGGACCCTCTGAG-AAATCATGAGAATCTGCAAGGCCAGAAAGGCCCAGGAGGTCCCCAAAGACCCACAGGCA-ATCGGATCATTGATATAGGAAACCA--GATGGCCAGAGGTGAGTTTGGAA-GCTTGAGTTAAGGTTCTTGGCT----TCAATGCCCCAC--------CTTTTTTAATAGAAATGTT-----------------------TTTCACATCCTGTACAGTCAGCAGAAAACACTTGTCAGGAGGGTAGAGGGAGAAGGGAAGGAGGCT-GTACAGTCAGCAGAAAA-CACTTGTCAATATTAGGA--------GGGTagagggagaagggaaggagaatgaacagaggaaaaggaaaggaggaggagaaggacggggaaacgggaagaggaagatagaagtga--ggaggagaaggagaaAGGAGGAAAGAGGGAATCCAAAAGGAGAAGTGAGGATAGAGGAGAAGGAAG-GATGATTGCTAGTCTCAgagtgtccagtgctttcccagccctgtgctacatgttttgcaagtgtttcct-catttagttctcagaacTATG------AAATTTGGTCATGGAAGAGTCAAGGGA--AGGA-AGTCTTATTCCTAATTT--AA-----AAAATAGCTTACAATGTACTTTTTCTGCCTAGGTCCCAAGATCCAGGCTTAGGTAACCAAATCAATTCAGTTTA-C-ATAATGGTACAAGTTAAATGCAGATTGAAGCATTAGGTAATGGGGAGAGCTATGTAAGGAGAAGGTTGAGTCCACCTAGTTATGCTGACTTCAG----------T-----CATGCTGCTCTTCT-GATTC--------TGATGTCCCTCAGCCTGCAGAAAcatatgcctatggggaccagggagatgaatgcaatgtgctaaatgggcctggtgtaaaagaataaaaagcag-aga----------ca-------gtgtcaggagtgaagagggagtgatggcaattacg-------gcaaagcggagaccacatgcca-ccctct--gaagagg-cagcaccactca----gctccagcctgttgtcg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80853366 1584 + 112612857 CTTGAAGTCCCTTCTTTTGGGACAGT---AGCAAAGAGTGGGGAAAG-AGGATGGCACTAATACAT-TC-CTCACGCCACA-AGAAGCGGCACTTTT--ATCCA-AAAAGGGTTGGCCTCAAGAGCCCTGGCTTAGAATAGTCAAACCCAACAAGCCTTTCACCTCGGAAA-------TGCGCGTGAAGCACTTAGAACAGTAGTTGGGCCTGGGTTGCAGTGAGCGTTGCCTATATGTGGGAGGT-ATGGTGGTGGCAGCAATCGCTGCAAGGGCCAGATTTCTCCACAAGGGTGCCTGGGTTGGCATCTGGAAGCAATTGCTATCTGCACCCAGTGGGTGGTTGCTATGTTAAGAAGATTGCCAGCAAGAGTTAGATCTTGATCTTGAAACCCTTCAG-TCGGCAAGCAAGGATCCCTGAAGACAGTGCCCTAACTGTGTCCCTCATGTGAGGATGGCCGTCATCTGAGCTCCAGTTGGCCTGTCAGTACTCGCCACAGAGATAAGGATCCAGGCTGGGATGGGC-----ATTTGAGACAACAAGCGTGGGAGGACAGGCT-AAGAACATCAAGCAAAACAAAGAGGCTTTTCAGATCCTTTCTAGTAAGAGTTTAGGGTTAGGGAGACTGAACTGCAGACA-AGGGAGGG---GGAAGCCACAGGATGAAAGACAGCAGGTTAAATGACAGCCATGAATGTGGGACCCTCTGAG-AAATCATGAGAATCTGCAAGGCCAGAAAGGCCCAGGAGGTCCCCAAAGACCCACAGGCA-ATCGGATCATTGATATAGGAAACCA--GATGGCCAGAGGTGAGTTTGGAAGGCTTGAGTTAAGGTTCTTGGCT----TCAATGCCCCAC--------CTTTTTTAATAGAAATGTT-----------------------TTTCACATC-------------------------------------------------------CT-GTACAGTCAGCAGAAAA-CACTTGTCAATATTagga--------gggtagagggagaagggaaggagaatgaacagaggaaaaggaaaggaggaggagaaggacggggaaacgggaagaggaagacagaagtga--ggaggagaaggagaaaggaggaaagagggaatccaaaaggagaagtgaggatagaggagaaggaAG-GATGATTGCTAGTCTCAgagtgtccagtgctttcccagccctgtgctacatgttttgcaagtgtttcct-catttagttctcagaacTATG------AAATTTGGTCATGGAAGAGTCAAGGGA--AGGA-AGTCTTATTCCTAATTT--AAAAAATAAAATAGCTTACAATGTACTTTTTCTGCCTAGGTCCCAAGATCCAGTCTTAGGTAACCAAATCAATTCAGTTTA-C-ATAATGGTACAAGTTAAATGCAGATTGAAGCATTAGGTAATGGGGAGAGCTATGTAAGGAGAAGGTTGAGTCCACCTAGTTATGCTGACTTCAG----------T-----CATGCTGCTCTTCT-GATTC--------TGATGTCCCTCAGCCTGCAGAAAcatatgcctatggggaccagggagatgaatgcaatgtgctaaatgggcctggtgtaaaagaataaaaagcag-aga----------ca-------gtgtcaggagtgaagagggagtgatggcaattacg-------gcaaagcggagaccacatgcca-ccctct--gaagagg-cagcaccactca----gctccagcctgttgtcg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76902424 1585 + 107442819 CTTGAAGTCCCTTCTTTTGGGACAGT---AGCAAAGAGTGGGGAAAG-AGGATGGCACTAATACAT-TC-CTCACGCCACA-AGAAGCGGCACTTTT--ATCCA-AAAAGGGTTGGCCTCAAGAGCCCTGGCTTAGAATAGTCAAACCCAACAAGCCTTTCACCTCGGAAA-------TGCGCatgaagcacttagaacagtagtTGGGCCTGGGTTGCAGTGAGAGTTGCCTATATGTGGGAGGT-ATGGTGGTGGCAGCAATCGCTGCAAGGGCCAGATTTCTCCACAAGGGTGCCTGGGTTGGCATCTGGAAGCAATTGCTATCTGCACCCAGTGGGCAGTTGCTATGTTAAGAAGATTGCCAGCAAGAGTTAGATCTTGATCTTGAAACCCTTCAG-TCGGCAAGCAAGGATCCCTGAAGACAGTGCCCTAACTGTGTCCCTCATGTGAGGATGGCCGTCATCTGAGCTCCGGTTGGCCTGTCAGTACTCGCCACAGAGATAAGGATCCAGGCTGGGATGGGC-----ATTTGAGACAACAAGCGTGGGAGGACAGGCT-AAGAACATCAAGCAAAACAAAGAGGCTTTTCAGATCCTTTCTAGTAAGAGTTTAGGGTTAGGGAGACTGAACtgcagacacagggaggg---ggaagCCACAGGATGAAAGACAGCAGGTTAAATGACAGCCATGAATGTGGGACCCTCTGAG-AAAGCATGAGAATCTGCAAGGCCAGAAAGGCCCAGGAGGTCCCCAAAGACCCACAGGCA-ATCGGATCATTGATATAGGAAACCA--GATGGCCAGAGGTGAGTTTGGAAGGCTTGAGTTAAGGTTCTTGGCT----TCAATGCCCCAc--------cttttttaatagaaatgtt-----------------------ttTCACATC-------------------------------------------------------CT-GTACAGTCAGCAGAAAA-CACTTGTCAATATTagga--------gggtagagagagaagggaaggagaatgaacagaggaaaaggaaaggaggaggagaaggacggggaaacgggaagaggaagacagaagtga--ggaggagaaggagaaaggaggaaagagggactccaaaaggagaagtgaggatagaggagaaggaag-gatgaTTGCTAGTCTCAGAGTGTCCAGTGCTTTCCCAGCCCTGTGCTACATGTTTTGTAAGTGTTTCCT-CATTTAGTTCTCAGAACTATG------AAATCTGGTCATGGAAGAGTCAAGGGA--AGGA-AGTCttattcctaattt--aaaaaataaaatagcttacaATGTACTTTTTATGCCTAGGTCCCAAGATCCAGGCTTAGGTAACCAAATCAATTCAGTTTA-C-ATAATGGTACAAGTTAAATGCAGACTGAAGCATTAGGTAATGGGGAGAGCTATGTAAGGAGAAGGTTGAGTCCACCTAGTTATGCTGACTTCAG----------T-----CATGCTGCTCTTCT-GATTC--------TGATGTCCCTCAGCCTGCAGAAACATATGCCTATGGGGACCAGGGAGATGAATGCAATGTGCTAAATGGGCCTggtgtaaaagaataaaaagcag-aga----------CA-------GTGTCAGGAGTGAAGAGGGAGTGATGGCAATTATG-------GCAAAGCGGAGACCACATGCCA-CCCTCT--GAAGAGG-CAGCACCACTCA----GCTCCAGCCTGTTGTCG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81165845 1589 + 108555830 CTTGAAGTCCCTTCTTTTGGGACAGT---AGCAAAGAGTGGGGAAAG-AGGATGGCACTAATACAT-TC-CTCATGCCACA-AGAAGCAGCACTTTT--ATCCA-AAAAGGGTTGGCCTCAAGAGCCCTGGCTTAGAATAGTCAAACCCAACAAGCCTTTCACCTCGGAaa-------tgcgtgtgaagcacttagaacagtagttgggcctgggttgcagtgagcgttGCCTGTATGTGGGAGGT-ATGGTGGTGGCAGCAATTGCTGCAAGGGCCAGATTTCTCCACAAGGGTGCCTTGGTTGGCATCTGGAAGCAATTGCTATCTGCACCCAGTGGGCGGTTGCTATGTTAAGAAGATTGCCAGCAAGAGTTAGATCTTGATCTTGAAACCCTTCAG-TCGGCAAACAAGGATCCCTGAAGACAGTGCCCTAACTGTATCCCTCATGTGAGGATGGCCGTCATCTGAGCTCCAGTTGGCCTGTCAGTACTCGCCACAGAGATAAGGATCCAGGCTGGGATGGGC-----ATTTGAGACAACAAGCGTGGGAGGACAGGCTGAAGAACATCAAGCAAAACAAAGAGTCTTTTCGGATCCTTTCTAGTAAGAGTTTAAGGTTAGGGAGACTGAACTGCAGACACAGGGAGGG---GGAAGCCACAGGATGAAAGACAGCAGGTTAAATGACAGCCATGAATGTGGGACCCTCTGAG-AAAGCATGAGAATCTGC-AGGCCAGAAAGGCCCAGGAGGTCCCCAAAGACCCACAGGCA-ATCGGATCATTGATATAGGAAACCA--GATGGCCAGAGGTGAGTTTGGAAGGCTTGAGTTAAGGTTCTTGGTT----TCAGTGCCCCAC--------CTTTTTTAATAGAAATGTT-----------------------TTTCACATC-------------------------------------------------------CT-GTACAGTCAGCAGAAAA-CACTGGTCAATATTAGGA--------GAGTAGagggagaagggaaagagaatgaacagaggaaaaggaaaggaggaggagaaggatggggaaacgggaagaagaagacagaagtga--ggtggagaaggagaaaggaggaaagagggaatccgaaaggagaagtgaggatagaggagaaggaaG-GACGATTACTAGTCTCAgagtgtccagtgctttcccagccctgtgctacatgttttgcaagtgtttcct-catttagttctcagaacTATG------AAATTTGGTCATGGAAGAGTCAAGGGA--AGGA-AGTCTTATTCCTAATTT--AAAAAATAAAATAGCTTACAATGTACTTTTTCTGCCTAGGTCCCAAGATCCAGGCTTAGGTAACCAAATCAATTCAGTCTA-C-ATAATGATGCAAGTTAAATGCAGATTGAAGCATTAGGTAATGGGGAGAGCTATGTAAAGAGAAGGTTGAGTCCACCTAGTTATGCTGACTTCAG----------T-----CATGCTGCTCTTCT-GATTC--------TGATGTCCCTCAGCCTGcagacacatatgcctatggggaccagggagatgaatgcaatgtgctaaatgggcctggtgtaaaagaataaaaagcag-agacac------tca-------gtgtcaggagtgaagagggagtgatggcaattatg-------gcaaagcggagaccacatgcca-ccctct--gaagagg-cagcaccactca----gctccagcctgttgtca i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111400913 1541 - 210400635 cTTGAAGTCCTTTCTTTTGGGGCAGT---AGCAAAAAGCAAGG-AAG-AGAATGGCACTAATACAT-TC-CTCATGCCACA-AGAAGCAGCACTTTT--ATCCA-AAAAGGGTTGTTCTCAAGAGCCCCAGCTTAGAACAGTGAAACCCAATGTGCGCTTCACCTCGGAAA-------TGTGCATGAAGCATGTAGAACCGTACCTAGGGCTGGGCTGCAGCGAGCATTGCCTGTATATGGGAGCT-ATGATGGTGGCAGCAATTGCTGCAAGGGCCAGATTTCTCCATGAGGGTGCCTGGGATGGCACCTAGAAGCAATTACTATTTGCACCCAGTGGGTGATTGTTATGTTAAGAAGATTGCCAGGGAGGGTTTGATCTTGATCTTGAAACCCTTCAG-TCAGCAAGCAAGACTCCCGGAAGACAATACCCTAACTCTGTCCCCCATGTGAGGATGGTTGTCAGCTGAGTTCCAGCTGGCCTGCTGGTACTCGCTACAGAGATAAGGATCCAGGCTGGGATGGGC-----ATTTGAGACAAGAAGCATGGGGGGACAGGCTGAAGAACATCAAGCAAAACAAAGAAGCTTTTCAAGTCTTTTCTAGTAAGAGTTTAGTGTTAGGGAGGCCGAAGTGCAGACAGAAGGAGGT---GGAGGCCTCAGGATAAAAGACAGAAGGTTAAATTACAGCCAAGAATATGGGACCCTCCTAG-AAAGCATGAGAATCTAT-AGGCTAGAAAGA---------------------CACAGCCA-ATCGGATCGTTGATATAGGTAACCA--GATGGCCAGAGG-AGGTTTGGAAGGCTTGAGTTAGGGTTCTCGGCT----TCAATGTCCTGCT----TTTTTTTTTTAATAGAAATGCT-----------------------TTTCATATC-------------------------------------------------------CT-TTATGGCCAGCAGAAAG-CGCTTGTCAATATTAGga--------gggtggagagagaggggaaggagaatgaacagaggaaaaggaatggaggaagaga---------------------------agatgaga--ggaggagaaggagaaaggaggaaagagggaatgcaaaaggagaagagaggaga---gagaagCAAG-GATGA-TGCTGGTCCCAGAGTGTCCAGTGCTTTCCCAGCCGTGTGCTACATGTTTTGCAAGTGTTTCCT-CATTTAGTTCTCAGAACTATG------AAATTTGGTCATGGAAGAGTCAAGGGA--AGGA-AGTCTTATTCCTAA----------GAAAAATAGCTTATAATGTATTTTGTCTGCCTAGGTCCCAAGATCCAGGCTAAGGTAACCAAATCATTTCAGTCTA-C-AAAATGATGCAAGTTAAATGCAGACTGAAGCATTAGGT-GTGGGGAAAGCTATGTAAGGAGAAGGTTGAGTCCACCTAGTAATTCTGTCTGCAG----------T-----TATGCTGCTCTTCT-GATTC--------TGATGTCCCTCAGCCTGCAGACGCATATGCCTATGGGCACCAGGGAGATGAATGCAATGTGCTAAGTGGACCTGGTGTAAAAGAATAAAAAGCAG-AAATACTCGGCTTCA-------GTGTCAGGAGTAaagaaggagtgatggcaattatgacaaagtacaaagtagagaccacatgcca-ccctctgagaagatg-cagcacaact--------tccagcctgttgtca i calJac3.chr1 I 330 C 0 s mm10.chr19 38050823 1513 - 61431566 CTTCACTTCCTGCCTACTGAGATATCCTGAACAAAGAGCGGTGAAAACAGGGTGGCATGAACACATCCC-CTGAGATCTCA-GTGATCCAAATCTTT--ACTAACCAACCCCTTGGTATCTAGAGCTTAATTTCATGAT--TCAGAGCTAGTGGGCACCACAGCTTGTGAATGGTGAGTGGGTACCACACATTTAGGGCAGTGCCTGGTCCC---------TGAGGATTAGCTGTACAAAGGACAC-CTG---GTGTAGGCAATAGCTTTAAGGATCAGGCTTACCTCATGGGTGGCCTGAGATGGC-TCTCAAAGCTATTGT------CACTCA-TGAGCAGCTTCCACGT---GAAGATTGCCTACTGGAGATA-AGCTTGATGCTGGAATCTTCCAGCTCAGCA------------TGATGGCATT-------CTGTGTCCTATATG-GAGGCTGATCATTTGCTGAACAGCTGCTGACCTATCAGAACTGGCCACAGTTAGAGGGATCCTAGCTGTGATGGCCAGCTGAGTTGGGGCAATAAGTGTGGGAAGATGAGCGGAAGGAAATCAAGCAAAAT--ATATGTATTTCAGAGC-TTTCTGGTAAGAGTTCATTGTTAAG--------------GACCAGGGGTGGTATGGGCAGCCGCATGATAGAAAGCAATGGGTTGATT--CAGGCACAAATGTGGAAGCTTC------ATATGTAGACATATGC-AGTCTACAACTT------ACACTTCCAAAGACCAATAAACA-AATGAATCGCTAGACTAGAAGTCTAAGAGTGGCCAGAGT--AGTGTGGAAGGCTTACACTGGTGTTCTTGGCT----TCATCACGCCGCCCCCACCCCATCCTTCATAGTAATATG----------------------AGTCCATTTC-------------------------------------------------------CT-GGCCAGCTGGCAGAATGCCACTTATCCATATTAGCG--------GGATAGAGGCAGAGACAGAAGATGATG-GCAGAGAATTAGAGAA-----AATAGGAGGATGGGGAA---GGTAACAGGAGACAGAGGAGA--GAAAGAGGAGG--------GGAAACAGCGAGTTAGAAAAG------GAAGACAGAATGGGAG--------------TAATCCTGCTGTGTCCACTGCTTTCCAAGCCCTGTGCAATGTATTCTACATACACTTTCT--ATTTAGATATCAGAGCTGTGATATATATATTTGGTTAGGAAAGAGTCTAGGGAACAGGA-AG-CTAATTCTTAAATT--TAAAAAAAAAAAGGCT-------TACTTTGTCTGGCTAGGTCCCAAGAGCCAGGCTGA-GTAACTAAATCAATTTAATCTATT-CTAATGATACAAGCTAAATGCAAATTAAATCATTTGTT-CTGGGGAG----------GGGGAGGGTTGAGAGCACCAAGTCATCCTGTTTTGAGGCTTTTGAGTC-----CAGGCTGCTCATCT-TGTTCCCTAGATTCAATG-CCCGGAGCCTGCA---CCCTACCCATGTGAGAACCAGGATGCCTAGTTCATTGTGCTAAATGAACCTGACGTGGGATGTAGAAAGGCAC-CGA---------TCATTGGCCTGTGTCAGAGTTCAGAGGAGTTGGAGGGC-----TG-------GAAAACTGGACAGGGCACTCCA-CTCTCT--TGAGAGG-CC-CACGTCTCAAGACACCTCAGCCTGTTGTCA i mm10.chr19 C 0 I 132 s canFam3.chr1 35290417 1495 - 122678785 CTTAGAATCACTTCTTTGGGGACAGT---AGTGGAGAATGGGAAATG-AAGATGGCACTTACACAT-TCTCTTGTGTCACAGAGAAGCTGCCATTTCTGTTTAA-AAAAGAGTTGGCCTCAAGAGCCAACTTCTCGTGCTTCAAAATCCAG------------CTagtaaa-------tccatgtgaagcgcttagaacagca------cctggtttacaatgagagttcaCTCTGTGCAGGGAGTAATGGTGTTGGTGGCCATGACAGCAAGGGCCAGATTCCCCC-CAGGGGTGCCTGGGTTGGCATCTAGAAGC--------------CTGGATGGGTGGTTGCTATATTGA-AAGCCTGCCCGCTGGAGACAGATGTCAATCTCAAAACCCCTC-G-CAAGCCAGTGAGGCTCCCTGAAGACAGCGCCCTAACTGT-----------GAAGCTGGTCATCAGCTGAGCCTCCATTGGCCCATCCATACTCACTGCAAAGCCCAGGGTCCTGGCTGGGGTTGAT-----GTTTAGGGCAATGAACATGGAAGGAGAGGCTGAGGAAGATCAAGCAAAGCAAAGAGGAATTTCAGAGCCCTTCTAGTAGAAGTTTGGTGTTGAGGAGCCTAAAATGCAA--GGGGTGGGGA---GGTGGTCCTAGGATGGAAGGCAGCAGGTGAGATGGCAGCCACAAATGTGGGAACCTCTGAGCATGGCGTGAGAA--TGC-AGGT-----------------------------CCCAGGCAGATCAGGTCACTGCCATAGGAAGCCA---CTGACCAGAGTCAGATTTGGAAGGCTCAGGTTACGGTTCTTGTTTGTAATCCATTTTTTCC--------GGTTTTTCATAGCCAtttttttttttttttttttttttttttttttACATC-------------------------------------------------------CTGGGGCAGCCAGCAGAGCACCATGTATCAGTGTCAGGAAAAACTGCggggtggggtgggggggcgggattgtc-----aggaggaggaaagaggagcaaaaagagcaaggaaaggg-----------cgggggagattgggggaaaaggaaggagagggaaacagag---------gaaggaggggCTGTAGAGCGGAGGGAAGTGATGAGC------------------------------GGCCTGTCCTCCATGTGTTGCATGTACTTTTTCCATTTTGTTATCAGGACTATG------GAATTTCCTTGTGGAAGAGTCTAGGGA--AGGAGAGTCTTACTCCTAATTT------TAAAAATCAGCTGACAGTGAACTTTGTCTGCATAGGCCCCAAGATCTA-----AGGCAACCAAATAAATTCAATCTA-CTATAATGATGCAAATTAGATGCAGATCAAATCATTGGGC-ATGAGGGGAGCTGTG---GAAGAAGGTTGAGTCCACCAAGGTATTCTAATTCCAG----------CAGAGGCATGCTGCTCCTCTGGGTTC--------TGAAGTTCTCAAGCTCTCA--------CACCTGTGGGGACTGGGAAGATAAATGCAGCAAGCTAAATGGGCCTGGCATGAGATGATAATAGGCAACAGACACTTGGCTTCA-------GTGTCAGGGGGTaatagggagtagtggggatgatg-------gcaaaatggagccc-catgcca-ccctct--gaagagg-cagcactcctta----gctgcagcctattattt i canFam3.chr1 C 0 C 0 a score=83085.000000 s hg38.chr9_GL383541v1_alt 83901 27 + 171286 -----tcatctggtaacatggtctcagtg--------ctt s panTro4.chr9 68649316 27 + 137840987 -----tcatctggtaacatggtctcagtg--------ctt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64804702 27 + 135191526 -----tcatctggtaacatggcttcagtg--------ctt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57841735 26 - 122973662 -----tcatctggtaacatgg-ctcagtg--------ctt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79774857 27 + 112192347 -----tcatctggtaacatggcctcagtg--------ctt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80854950 27 + 112612857 -----tcatctggtaacatggcctcagtg--------ctt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76904009 27 + 107442819 -----TCATCTGGTAACATGGCCTCAgtg--------ctt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81167434 27 + 108555830 -----tcatctggtaacatggcctcagtg--------ctt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111402454 35 - 210400635 -----tcatctggtaacatggcctcagtgttaccagactt i calJac3.chr1 C 0 C 0 s canFam3.chr1 35291912 40 - 122678785 tcctgtattgtgcaaccatggtctcagtgtggtgggacct i canFam3.chr1 C 0 C 0 e mm10.chr19 38052336 132 - 61431566 I a score=5006675.000000 s hg38.chr9_GL383541v1_alt 83928 1352 + 171286 tgtaattttttcaaaagaggccagtgatccagTGTTCAGGCAACTTTCAGTGGGTTGACAAAATATATCTGCAGGTTT-ATCTGCCCAGAGATTTACTTAACT--GCAGTTACGTATTTTTCCAGGTTGCAAA--CAAAAATTGATCCTTTTCCTATGTTCCTTTCTCTTTCCAGGCCATTACATTTATGTGGATACCTCCTTTGGCAAGCAGGGGGAGAAAGCTGTGCTGCTAAGTCCTGACTTACAGGCTGAGGAATGGAGCTGCCTCCGTTTGGTCTACCAGATAACCACATCTTCGGAGTCTCTGTCAGATCCCAGCCAGCTGAACCTCTACATGAGATTTGAAGATGAAAGCTTTGATCGCTTGCTTTGGTCAGCTAAGGAACCTTCAGACAGCTGGCTCATAGCCAGCTTGGATTTGCAAAACAGTTCCAAGAAATTCAAGGTAGGTGGAGTTTAGGAGAAAGATAT-AAGGCCTATTATCTTTGCTTTATACTAT------TCT-----------AA-------------AATCTT--------------ATGAA-------------------AACTTCTGACATGGAGGTTAGTTATC---------------------------------------------------TCCTGGATTATGACGTGA----------------------------------------------------------------------------------------TGTTTCATAAGA----------TAC--------ATACCATAGAAGAATATTAGCAAT---------GGAAATTAACATTTTGTTTATTCCTTAAAAGAGCTTCTTCCCAGATTTCTTTCCCATCTATTTAAATGAGCCTTCTGTAAAAATCTAAATGGGGCTTAAATCAACCTCTTCAAT--------------------------GAAAATAGATTTTCTA--TGGC-TTTAGGGAGTATTCTCATTT-CTA-TAATTTTATTTCATCCTTCTAAATTGTGTGTGCTATGTGTTTGT-TTATCTTCTTAATCATTTCTTTGCTACA-AATTTTGAACAAAAGAT----TATAATAAAA-GGAAAGTGAAAATACTTTAAAAGAGAAAAGATACTTAAAGGACATGTTCCATTTCCTTTTCAAAGAGGGAAGTTGTTCCTTTGGGAGTCCTGGAAAAGGAAGGTAGCGAATGTAAGGTGAAGCTGGGTGTGGACTGGATAAGG-AAGGAGGATGGGATCCAGACACACCTGGC----CATGAAGTGTGATGTTTATTGAAAATATTTCATCGGGGACACAATGGAGCCATCATGAAAATATTCCCCATTCCTAATCCGTCTTTCAATTTCCTATCCCATCCCA---CTTCTTTGAAAGGC-TTGAAA----TGCTTTACTCTCCAATACCCACTGTCTGCTTGGAGTCCTTCCCTGTCAGCCAGT------GGTTGAG-GATGGAGCATGGGGGCTCTGAGTTCTCTCTTTAACAACTTCTTCCCAGCAGT-TATCACCTCCTAAATCTGCCAGCATAGTTGCAGAATATAGGGCTAAAACCACAGGAGAAAAAGTGATTACTTTCAGAAACAGG-----------ACCACAA s panTro4.chr9 68649343 1352 + 137840987 tgtaattttttcaaaagaggccagtgatccagTGTTCAGGCAACTTTCAGTGGGTTGACAAAATATATCTGCAGGTTT-ATCTGCCCAGAGATTTACTTAACT--GCAGTTACGTATTTTTCCAGGTTGCAAA--CAAAAATTGATCCTTTTCCTGTGTTCCTTTCTCTTTCCAGGCCATTACATTTATGTGGATACCTCCTTTGGCAAGCAGGGGGAGAAAGCTGTGCTGCTAAGTCCTGACTTACAGGCTGAGGAATGGAGCTGCCTCCGCTTGGTCTACCAGATAACCACATCTTCGGAGTCTCTGTCAGATCCCAGCCAGCTGAACCTCTACATGAGATTTGAAGATGAAAGCTTTGATCGCTTGCTTTGGTCAGCTAAGGAACCTTCAGACAGCTGGCTCATAGCCAGCTTGGATTTGCAAAACAGTTCCAAGAAATTCAAGGTAGGTGGAGTTTAGGAGAAAGACAT-AAGGCCTATTATCTTTGCTTTATACTAT------TCT-----------AA-------------AATCTT--------------ATGAA-------------------AACTTCTGACATGGAGGTTAGTTATC---------------------------------------------------TCCTGGATTATGACGTGA----------------------------------------------------------------------------------------TGTTTCATAAGA----------TAC--------ATACCATAGAAGAATATTAGCAAT---------GGAAATTAACATTTTGTTTATTCCTTAAAAGAGCTTCTTCCCAGATTTCTTTCCCATCTATTTAAATGAGCTTTCTGTAAAAATCTAAATGGGGCTTAAATCAACCTCTTCAAT--------------------------GAAAATAGATTTTCTA--TGGC-TTTAGGGAGTATTCTCATTT-CTA-TAATTTTATTTCATCCTTCTAAATTGTGTGTGCTATGTGTTTGT-TTATCTTCTTAATCATTTCTTTGCTACA-AATTTTGAACAAAAGAT----TATAATAAAA-GGAAAGTGAAAATACTTTAAAAGAGAAAAGATACTTAAAGGACATGTTCCATTTCCTTTTCAAAGAGGGAAGTTGTTCCTTTGGGAGTCCTGGAAAAGGAAGGTAGCGAATGTAAGGTGAAGCTGGGTGTGGACTGGATAAGG-AAGGAGGATGGGATCCAGACACACCTGGC----CATGAAGTGTGATGTTTATTGAAAATATTTCATCGGGGACACAATGGAGCCATCATGAAAATATTCCCCATTCCTAATCCGTCTTTCAATTTCCTATCCCATCCCA---CTTCTTTGAAAGGC-TTGAAA----TACTTTACTCTCCAATACCCACTGTCTGCTTGGAGTCCTTCCCTGTCAGTCAGT------GGTTGAG-GATGGAGCATGGGGGCTCTGAGTTCTCTCTTTAACAACTTCTTCCCAGCAGT-TATCACCTCCTAAATCTGCCAGCATAGTTGCAGAATATAGGGCTAAAACCACAGGAGAAAAAGTGATTACTTTCAGAAACAGG-----------ACCACAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64804729 1348 + 135191526 tgtaattttttcaaaagaggccagTGATGCAGTGTTCAGGCAACTTTCAGTGGGTTGACAAAATATATCTGCAGGTTT-ATCTGCCCAGAGATTTACTGAACT--GCAGTTGCGTATTTTTCCAGGTTGCAAAC-CAAAAATTGATCCTTTTCCTGTGTTCCTTTCTCTTTCCAGGCCATTACATTTATGTGGATACCTCCTTTGGCAAGCAGGGGGAGAAAGCTGTGCTGCTAAGTCCTGACTTACAGGCTGAGGAATGGAGCTGCCTCCGCTTGGTCTACCAGATAACCACATCTTCAGAGTCTCTGTCAGATCCCAGCCAGCTGAACCTCTACATGAGATTTGAAGATGAAAGCTTTGATCGCTTGCTTTGGTCAGCTAAGGAACCTTCAGACAGCTGGCTCATAGCCAGCTTGGATTTGCAAAACAGTTCCAAGAAATTCAAGGTAGGTGGAGTTTAGGAGAAAGATAT-AGGGCCTATTATCTTTGCTTTATACTAT------TCT-----------AA-------------AATCTT--------------ATGAA-------------------AACTTCTGACGTGGAGGTTAGTTATC---------------------------------------------------TCCTGGATTATGATGTGA----------------------------------------------------------------------------------------TGTTTCATAAGA----------TAC--------ATACCATAGAAGAATATTAGCAAT---------GGAAATTAACATTTT-TTTATTCCTTAAAAGAGCTTCTTCCCAGATTTCTTTCCCATCTATTTAAATGAGCCTTCTGTAAAAATCTAAATGGGGCTTAAATCAACCTCTTCAAT--------------------------AAAAATATATTTTCTA--TGGC-TTTAAGGAGTATTCTCATTT-CTA-TAATTTTATTTTGTCCTTCTAAATTGTGTGTGCTATG----TGT-TTATCTTCTTAATCATTTCTTTGCTACA-AATTTTGAACAAAACAT----TATAATAAAA-GGAAAATGAAAATACTTTAAAAGAGAAAAGATACTTAAAGGACATGTTCCATTTCCTTTTCAAAGAGGGAAGTTGTTCCTTTGGGAGTCCTGGAAAAGGAAGGTAGCAAATGTAAGGTGAAGCTGGGTGTGGACTGGATAAGG-AAGGAGGATGGGATCCAGACACACCTGGC----CATGAAGTGTGATGTTTATTGAAAATATTTCATCGAGGACACAATGGAGCCATCATGAAAACATTCCCCATTCCTAATCCGCCTTTCAATTTCCTATCCCATCCCA---CTTCTTTGAAAAGC-TTGAAA----TACTTTACTCTCCAATACCTGCTGTCTGCTTGGAGTCCTTCCCTGTCAGCCAGT------GGTTGAG-GATGGAGCATGGGGGCTCTGAGTTCCCTCTTTAACAACTTCTTCCCAGCAGC-TATCACCTCCTAAATCTGCCAGCATAGTTGCAGAATATAGGGCTAAAACCACAGGAGAAAAAGTGGTTACTTTCAGAAACAGG-----------ACCACAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57841761 1353 - 122973662 tctaattttttcaaaagaggccagtgatccagTGTTCAGGCAACTTTCAATGGATTGACAAAATGTATCTGCAGGTTT-ATCTGCCCAGAGACTTACTGGACT--GCAGTTGCGTATTTTTCCAGGTTGCAAGC-CAAAAATTGATCCTTTTCCTGTGTTCCTTTCTCTTTCCAGGCCATTACATTTATGTGGATACCTCCTTTGGCAAGCAGGGAGAGAAAGCTGTGCTGCTAAGTCCTGACTTACAGGCTGAGGAATGGAGCTGCCTCCGCTTGGTCTACCAGATAACCACATCTTCGGAGTCTCTGTCAGATCCCAGCCAGCTGAATCTCTACATGAGATTTGAAGATGAAAGCTTTGATCGCTTGCTTTGGTCAGCTAAGGAACCTTCAGACAGCTGGCTCATAGCCAGTTTGGATTTGCAAAATAGTTCCAAGAAATTCAAGGTAGGTAGAGTTTAGGAGAAAGATAT-AGGGCCTATTATCTTTGCTTTATACTAT------TCT-----------AA-------------AATCTT--------------ATGAA-------------------AACTTCTGACGTGGAGGTTAGTTATC---------------------------------------------------TCCTGGATTATGATGTGA----------------------------------------------------------------------------------------TGTTTCATAAGA----------TAC--------ATACCACAGAAGAATATTAGCAAT---------GGAAATTAACATTTTGTTTATTTCTTAAAAGAGCTTCTTCCCAGATTTCTTTCCCGTCTATTTAAATGAGCCTTCTGTAAAAATCTAAATGGGGCTTAAACCAACCTCTTCAAT--------------------------GAAAATAGATTTTCTA--TGGC-TTTAGGGAGTATTCTCATTT-CTA-GAATTTTATTTCATCCTTCTAAATTGTGTGTGCTATATGTTTGT-TTATCTTCTTAATCATTTCTTTGCTACA-AATTTTGAACAAAACAT----TATAATAAAA-GGAAAATGAAAATACTTTAAAAGAGAAAAGATACTTAAAGGACATGTTCCATTTCCTTTTCAAAGAGGGAAGTTGTTCCTTTGGGAGTCCTGGAAAAGGAAGGTAGCGAATGTAAGGTGAAGCTGGGTGTGGACTGGATAAGG-AAGGAGGATGGGATCCAGACACACCTGGC----CATGAAGTGTGATGTTTATTGAAAATATTTCATCGAAGACACAATGGAGCCATCATGAAAACGTTCCCCATTACTAATCTGCCTTTCAATTTCCTATCCCATCCCA---CTTCTTTGAAAAGC-TTGAAA----TACTTTACTCTCCTATACCTGCTGTCTACTTGGAGTCCTTCCCTGTCAGCCAGT------GGTTGAG-GATGGAGCATGGGGGCTCTGAGTTCCCTCTTTAACAACTTCTTCCCAGCAGT-TATCACCTCCTAAATCTGCCAGCATAGTTGCAGAATATAGGGCTAAAACCACAGGAGAAAAAGTGATTACTTTCAGAAACAGG-----------ACCACAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79774884 1378 + 112192347 t-caattttttcaaaagaggccagtgatccagTGTTCAGGCAGCTTCCAGTGGGTTGACAAAATATATCTGCAGGTTT-ATCTGCCCAGAGACTT----GACG--ACAGTTGCATATTTTTCCAGGTTGCAAAC-CAAAAATTGATCATTTTCCTGTGTTCCTTTCTCTTTCCAGGTCATTACATTTACGTGGATACCTCCTTTGGCAAGCAGGGGGAGAAAGCTGTGCTGCTAAGTTCTGACTTACAGGCTGAGGAATGGAGCTGCCTCCGCTTGGTCTACCAGATAACCACATCTTCAGAATCTCTGTCAGATCCCAGCCAGCTGAACCTCTATATGAGATTTGAAGATGAAAGCTTTGATCGCTTGCTTTGGTCAGCTAAGGAACCTTCAGACAGCTGGCTCATAGCCAGCTTGGATTTGCAAAACAGTTCCAAGAAATTCAAGGTAGGTGGAGTTTAGGAGAAAGATAT-AGAGCCTCTTATCTTTGCTTTATACTAT------TCT-----------AA-------------AATCTT--------------ATGAA-------------------AATTTCTGATGTGGAGGTTAGTTATC---------------------------------------------------TCCTGGATTTTGATGTGA----------------------------------------------------------------------------------------TGTTTCATAGGA----------TAC--------ATACCATAGAAGAATATTAGCAAT---------GGAACTTAACATTTTGTTTATTCCTTAAAAGAGCTTCTTCCCAGATTTCCTTCCCATCTATTTAAATAAGCCTTCTGTAAAAATCTAAATGGGGCTTAAACCAACCTCTTCAATTTTTCTATGAAAAATCTTTTTCATAGAAAAATAGATTTTCTA--TGGCTTTTAGGGAGTATTCTCATTT-CTA-TAATTTTATTTCATCCTTCTAAACTGTGTGTGCTATG----TGT-TTATCATCTTAATCATTTCTTTGCTACA-AATTTTGAACAAAACATTAACTATAATAAAA-TGAAAATGAAAATACTTTAAAAGAGAGAACATACTTAAAGGATATGTTCCATTTCCTTTTCAAAGAGGGAAGGTGTTCCTTTGGGAGTCCTGGAAAAGGAAAGTAGAGAATATAAGGTGATGCTGGGTGTGGATTGGATAAGG-AAGGAGGATGGGATCCAGACACACCTGGC----CATGAAGTGTGATGTTTATTGAAAATATTTCATCAAGGACACAATGGAGCCATCATGAAAACATTCCCCATTCCTAATCCACCTTTCAGTTTCCTATCCCATCCTGCTTCTTCTTTGAAAAGC-TTGAAA----TACTTTACTCTCCAATACCCTCTTTCTGCCTGGAGTCCTTCCCTGTCAGCTGGT------GGTTGAG-GATGGAGCATGGGGCCTCTGAGTTCCCTCTTTTACAACATCCTCCCAGCAGT-TATCACCTCCTAAATCTGCCAGCATAGTTGCAGAATATAGGGCTAAAACCACAGGAGAAAAAGTGATTACTTTCAGAAACAGG-----------ACCACAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80854977 1352 + 112612857 t-caattttttcaaaagaggccagtgatccagTGTTCAGGCAGCTTCCAGTGGGTTGACAAAATATATCTGCAGGTTT-ATCTGCCCAGAGACTT----GACT--GCAGTTGCATATTTTTCCAGGTTGCAAAC-CAAAAATTGATCATTTTCCTGTGTTCCTTTCTCTTTCCAGGTCATTACATTTACGTGGATACCTCCTTTGGCAAGCAGGGGGAGAAAGCTGTGCTGCTAAGTTCTGACTTACAGGCTGAGGAATGGAGCTGCCTCCGCTTGGTCTACCAGATAACCACATCTTCAGAATCTCTGTCAGATCCCAGCCAGCTGAACCTCTATATGAGATTTGAAGATGAAAGCTTTGATCGCTTGCTTTGGTCAGCTAAGGAACCTTCAGACAGCTGGCTCATAGCCAGCTTGGATTTGCAAAACAGTTCCAAGAAATTCAAGGTAGGTGGAGTTTAGGAGAAAGATAT-AGAGCCTCTTATCTTTGCTTTATACTAT------TCT-----------AA-------------AATCTT--------------ATGAA-------------------AATTTCTGATGTGGAGGTTAGTTATC---------------------------------------------------TCCTGGATTTTGATGTGA----------------------------------------------------------------------------------------TGTTTCATAGGA----------TAC--------ATACCATAGAAGAATATTAGCAAT---------GGAACTTAACATTTTGTTTATTCCTTAAAAGAGCTTCTTCCCAGATTTCCTTCCCATCTATTTAAATAAGCCTTCTGTAAAAATCTAAATGGGGCTTAAACCAACCTCTTCAAT--------------------------GAAAATAGATTTTCTA--TGGCTTTTAGGGAGTATTCTCATTT-CTA-TAATTTTATTTCATCCTTCTAAACTGTGTGTGCTATG----TGT-TTATCATCTTAATCATTTCTTTGCTACA-AATTTTGAACAAAACATTAACTATAATAAAA-TGAAAATGAAAATACTTTAAAAGAGAGAAAATACTTAAAGGATATGTTCCATTTCCTTTTCAAAGAGGGAAGGTGTTCCTTTGGGAGTCCTGGAAAAGGAAAGTAGAGAATATAAGGTGATGCTGGGTGTGGATTGGATAAGG-AAGGAGGATGGGATCCAGACACACCTGGC----CATGAAGTGTGATGTTTATTGAAAATATTTCATCAAGGACACAATGGAGCCATCATGAAAACATTCCCCATTCCTAATCCACCTTTCAGTTTCCTATCCCATCCTGCTTCTTCTTTGAAAAGC-TTGAAA----TACTTTACTCTCCAATACCCTCTTTCTGCCTGGAGTCCTTCCCTGTCAGCTGGT------GGTTGAG-GATGGAGCATGGGGCCTCTGAGTTCCCTCTTTTACAACATCCTCCCAGCAGT-TATCACCTCCTAAATCTGCCAGCATAGTTGCAGAATATAGGGCTAAAACCACAGGAGAAAAAGTGATTACTTTCAGAAACAGG-----------ACCACAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76904036 1345 + 107442819 t-caattttttcaaaAGAGGCCAGTGATCCAGTGTTCAGGCAGCTTCCAGTGGGTTGACAAAATATATCTGCAGGTTT-ATCTGCCCAGAGACTT----GACT--GCAGTTGCATATTTTTCCAGGTTGCAAAC-CAAAAATTGATCCTTTTCCtgtgttcctttctctttccaggTCATTACATTTACGTGGATACCTCCTTTGGCAAGCAGGGGGAGAAAGCTGTGCTGCTAAGTTCTGACTTACAGGCTGAGGAATGGAGCTGCCTCCGCTTGGTCTACCAGATAACCACATCTTCAGAATCTCTGTCAGATCCCAGCCAGCTGAACCTCTATATGAGATTTGAAGATGAAAGCTTTGACCGCTTGCTTTGGTCAGCTAAGGAACCTTCAGACAGCTGGCTCATAGCCAGCTTGGATTTGCAAAACAGTTCCAAGAAATTCAAGGTAGGTGGAGTTTAGGAGAAAGATAT-AGAGCCTCTTATCTTTGCTTTATACTAT------TCT-----------AA-------------AATCTT--------------ATGAA-------------------AATTTCTGATGTGGAGGTTAGTTATC---------------------------------------------------TCCTGGATTTTGATGTGA----------------------------------------------------------------------------------------TGTTTCATAGGA----------TA---------ATACCATAGAAGAATATTAGCAAT---------GGAacttaacattttgtttattccttaaaagagcttcttcccagatttctttCCCATCTATTTAAATAAGCCTTCTGTAAAAATCTAAATGGGGCTTAAACCAACCTCTTCAAT--------------------------GAAAATAGATTTTCTA--TGGCTTTTAGGGAGTATtctcattt-cta-taattttatttcatccttcTAAACTGTGTGTGCTATG----TGT-TTATCATCTTAATCATTTCTTTGCTACA-AATTTTGAACAAAACATTaactataat-------aaaatgaaaatactttaaaagagagaaaatacttAAAGGATATGTTCCATTTCCTTTTCAAAGAGGGAAGGTGTTCCTTTGGAAGTCCTGGAAAAGGAAAGTAGAGAATATAAGGTGATGCTGGGTGTGGATTGGATAAGG-AAGGAGGATGGGATCCAGACACACCTGGC----TATCAAGTGTGatgtttattgaaaatatttcatcAAGGACACAATGGAGCCATCATGAAAACATTCCCCATTCCTAATCCACCTTTCAGTTTCCTATCCCATCCTGCTTCTTCTTTGAAAAGC-TTGAAA----TACTTTACTCTCCAATACCCTCTTTCTGCCTGGAGTCCTTCCCTGTCAGCTGGT------GGTTGAG-GATGGAGCATGGGGCCTCTGAGTTCCCTCTTTTACAACATCCTCCCAGCAGT-TATCACCTCCTAAATCTGCCAGCATAGTTGCAGAATATAGGGCTAAAACCACAGGAGAAAAAGTGATTACTTTCAGAAACAGG-----------ACCACAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81167461 1352 + 108555830 t-caattttttcaaaagaggccagtgatccagTGTTCAGGCAGCTTCCAGTGGGCTGACTAAATATATATGCAGGTTT-ATCTTCCCAGAGACTT----GACT--GCAGTTGCATATTTTTCCAGGTTGCAAAC-CAAAAATTGATCCTTTTCCTGTGTTCCTTTCTCTTTCCAGGTCATTACATTTATGTGGATACCTCCTTTGGCAAGCAGGGGGAGAAAGCTGTGCTGCTAAGTTCTGACTTACAGGCTGAGGAATGGAGCTGCCTCCGCTTGGTCTACCAGATAACCACATCTTCAGAGTCTCTGTCAGATCCCAGCCAGCTGAACCTCTATATGAGATTTGAAGATGAAAGCTTTGATCGCTTGCTTTGGTCAGCTAAGGAACCTTCAGACAGCTGGCTCATAGCCAGCTTGGATTTGCAAAACAGTTCCAAGAAATTCAAGGTAGGTGGAGTTTAGGAGAAAGATAT-AGAGCCTCTTATCTTTGCTTTATACTAT------TCT-----------AA-------------AATCTT--------------ATGAA-------------------AATTTCTGATGTGGAGGTTAGTTATC---------------------------------------------------TCCTGGATTTTGATGTGA----------------------------------------------------------------------------------------TGTTTCATAGGA----------TAC--------ATACCATAGAAGAATATTAGCAAT---------GGAACTTAACATTTTGTTTATTCCTTGAAAGAGCTTCTTCCCAGATTTCTTTCCCATCTATTTAAATAAGCCTTCTGTAAAAATCTAAATGGGGCTTAAACCAACCTCTTCAAT--------------------------GAAAATAGATTTTCTA--TGGCTTTTAGGGAGTATTCTCATTT-CTA-TAATTTTATTTCATCCTTCTAAACTGTGTGTGCTATG----TGT-TTATCATCTTAATCATTTCTTTGCTACA-AATTTTGAACAAAACATTAACTATAATAAAA-TGAAAATGAAAATACTTTAAAAGAGAGAAAATACTTAAAGGATATGTTCCATTTCCTTTTCGAAGAGGGAAGGTGTTCCTTTGGGAGTCCTGGAAAAGGAAAGTAGAGAATATAAGGTGATGCTGGGTGTGGATTGGATAAGG-AAGGAGGATGGGATCCAGACACACCTGGC----CATGAAGTGTGATGTTTATTGAAAATATTTCATCAAGGACACAATGGAGCCATCATGAAAACATTCCCCATTCCTAATCCACCTTTCAGTTTCCTATCCCATCCTGCTGCTTCTTTGAAAAGC-TTGAAA----TATTTTATTCTCCAATACCCTCTTTCTGCCTGGAGTCCTTCCCTGTCAGCTGGT------GGTTGAG-GATGGAGCATGGGGTCTCTGAGTTCCCTCTTTTACAACATCCTCCCAGCAGT-TATCACCTCCTAAATCTGCCAGCATAGTTGCAGAATATAGGGCTAAAACCACAGGAGAAAAAGTGATTACTTTCAGAAACAGG-----------ACCACAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111402489 1339 - 210400635 tctaattttttcaaaagagatccataatccAATGTTCAGTCAACTTTCAGTGAGTTGACAAAATATATCTCCAAGTTT-ATCTGCCCACGGACTTACTGGACT--GCAGTTGCATATTTTCCCAAGTTGCAAACAAAAAAATTGATCCTTTACTTATGTTCCTTTCTCTTTCCAGGCCATTACATTTATGTGGATACCTCCTTTGGCAAGCAGGGGGAGAAAGCTGTGCTGCTAAGTTCTGACTTACAGGCTGAGGAATGGAGCTGCCTCCGCTTGGTCTACCAGATAACCATGTCCTCTGAGTCTCTGTCAGATCCCAGCCAGCTGAACCTCTACATGAGATTTGAAGATGAAAGCTTTGATCGCTTGCTTTGGTCAGCAAAGGAACCTTCAGACAGCTGGCTCATAGCCAGCTTGGATTTGCAAAACAGTTCCAAGAAATTCAAGGTAGGTAGAGTTTAGGAGAAAGATCT-AGGACTTATTACCTGTGCTTTTTACTAT------TCT-----------AA-------------AATCTT--------------ATGAA-------------------AATTTCTGATGTGGAG----GTTATC---------------------------------------------------TCCTAGATTATGATGTGG----------------------------------------------------------------------------------------TGTTTCATAGGA----------TGC--------ATACCATAGAAGAGTATTAGCAAT---------GGAAATTAACATTTTCTTTATTCCTTAAAAGAGCTTCTTCCAAGATTTCTTTCCCATCTATTTAAATGAGCCTTCTGTAAAAATCTAAATGGGGCTTAAACCAACCTCTTCATT--------------------------GGAAATAGATTTTCTA--TGGC-TTTAGGGAGTATTTCCATTTCCTA-TCGTTTTATTTCATCCTTCTAAATTGTGTGTGCTGTGTGTTTAT-TTGTCTTCTTAATGGTTTCTTTGCTGCA-AATTTTGAACAAAACAT------TAATAAA----AAAATGAAAATACTTTAAAAGAGAAAAGATACTTAAAGGACATGTTTCATTTCCTTTTCAAAGAGGGAAATTGTTCCTTCAGGAGTCCTAGAAAAGGAAGGTAGAGAATGTAAGGTGAAGCTGGGTGTAGATTGGATAAGG-AAAGAGGATGGGATCTGGACACACCTGGC----CATGAAGTGTGATGTTTATTGAGAATATTTCATTGAGGACACAATGGAGCCATCATGAAAATGTTCTCCATTCCTCATCCACCCTTCAGCTCCCGATCCCATCCTGCTGCTTCTTTGAAGAGC-CTGAAA----TTCTTTACTCTCCAATACCCCTTCTCTGTCTGGAGTCCTTCCGTGTCAGGTAGT------GGTTGAG-GATGGAGCATGGGGCCTCTGAGTTCCCTCTTTCAGAACATCCTCCTAGAAGT-TATCGCCTCCTAAATCTGCCAGCATAGTTGCAGAATATAGGGCTAAAACCACAGGAGAAGAAGTGATTAGTTTCAGAAAC--------------------- i calJac3.chr1 C 0 C 0 s mm10.chr19 38052468 1458 - 61431566 TGTGGCCCTTTCACAGGAGACCAGGGACCCAGTGTTCAGGCAA-TACCGTTGGGATGATGCAATGCA-----AGCTCT-GTCTTCCTACAGATTTATGGGACCAAACAGTTGT-CCTTTCTCCAGGTTGCATC--AGAAGACTAATTCCTTGTCTTTGATCCTCTCCCTTT-CAGGCCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAGGTAGGTGGGGTTTAAGAGGAAGATGTGAGGGTGTGTAACATGTGTTCTATGCTATATGAGGTCT-----------TAGAGAagtggttccaacctt--------------ctgaatgctacaacccttaaatacagttcctcatgttgtggtgattctccaaccataaaacttttttttgctgctactttataactgtaactttgctactgttatgaattgtaacataagtttctgtgttttctgagggtcttagacaaccccaatgaaagggtcatctacccccatagaggtcacaacccacaggttgaaaagcactgTTTTATAACAAGTAATTCACTACAGTTAACTACATCATGGAAAATT------AAT---------GGAAGTTAATA-TTTGCTCATTCCTTAAAAGAGCATCTTCACAGACTTTCT--CTATCTATTAAAAAAAAAA--AAGTAAGACTCTAAATGGTGCCTAAGTTGATCTCTTCAGT--------------------------GAGAATGGAT-------------TGTCAGGAGTATTTTTGTTGCCAA-CAATTTTGCTTCACCCTTCTGCATTGTTTGTGGGATATGTTTATGTTATCTTCCTGATGTGTTAGCTGCTCCACGGGTTTGAACAAGGCAT----TATCATAAAAGGGAACACTAAAATGCTTGCAAAGAGGAA----ACTTA---GGCATGTTTCTTTTCCTTTTCAAAGAGGCTAATTGTTCTGTCTGTGGTGCTCTGAGAGGAAGGCGGAAGATGTAA---GAGGTGGGATGTGGAGTTGA------------------GCCAGGACAGAGCTAG----------AGTGTGGCACACA-TGAGAGTATTGC--TGGGGACACCACAGAGCCACCAGGAGA-----CCCTGTTCCTAGTGCA--TTCCATTCCTAGGTTCAATTCT----CTTCTTTGAAAGGC-TTTAAAACAGAGCATCTCCCTCTGG----CCCAGTCTGTTGGGGGTC--TCCCCAAAAGATAGC------CATTGAGAAAAAGAACATTGGGAGTCTGAGTTC-CTATTTCATA---------------T-TAT--CCTCCTATGGCTGCCTGAATACTTGCAGAATATCCTCCTGAAGCCACAAAAGTAAAAGCTA----TGTGAGAACCAAA-----------GCCAGAC i mm10.chr19 I 132 C 0 s canFam3.chr1 35291952 1381 - 122678785 tctaatttttt-gcaagagggcagagatccCGTGTTCAGGCAACATTCAGTAGGCCATTGAAACGCATCTGCAGGCTGAATCTGCCCTTTGCTTCACTGGACC--ACTGTTGTGTATTTCCTTGAGTTTCGAAC-AGCCCATCAATCTTTTCCCGGTGCTCCTTTCTCTTTCCAGGCCACTACATTTATGTGGACACCTCCTTTGCCAAGCAGGGGGAAAAAGCCGTGCTGCTAAGCTCTGATCTACAGGCCGAGGAATGGAGCTGCCTCCGGCTGGTCTACCAAATAACTGCATCTTCAAGGTCTCCATCAGACACCAGCCGGCTGAACCTCTATGTGAGATTTGAAGATGAAAGCTTTGATCGCTTGCTTTGGTCAGCGAAGGAACCTTCAGACAGCTGGCTCATAGCCAGCTTGGATTTACAAAACAGTTCCAAGAAATTCAAGGTAGGTAGAATTTAGG-------TGC-CCAGCTTATCA-CGTAGCTTTATGCTAC------TCTGAGGTTGGATGAA-------------AATTTCTACTCTGAGGTTGGATGAA-------------------AATTTCTGCCACTGAAGGTAGTTATC---------------------------------------------------TTCTATGTTAGGAGGTGC----------------------------------------------------------------------------------------TGCTTTACAAGA----------GAT--------GAGTCCCAGAAGAATATTAATAATTAATGATTAGTAAGTTAATATTTTGTTTATTCTTTAGAAAGGCTTCTTCCTAGATTCTGTTCTTGTCT----AAGTGGGACTTCTGTGAGAATCTAAA-----------CCAACCTCCTCGAT--------------------------GGAAATTTAGTTTCTAATGGGC-TTTAGGGAGCATTTTCATTT-CTAGTCATTTTGTTTCATCTTTCTCATGTGTGTGTG-------------GTATCTTCCTAATGTTTTGTTTGCTACA-AATTTTGAACAAATCATTTAGTATGGTTAAAGGAAAAATGAAGATACTTTGAAGAGGGAAAGATATGTGAAGGATATGTTCTGATTCCTTTTCAAAGGTGAAGGCTGTTCCATCTGAAGTGTTGGAAAAGGAAGATAGACAATGTGACATAAAGCTGAGTGTTGTTTGGAGCAGGCAAGGAGGATGGGATCCCGACTCACTTGGCCAGACATGAAGTGTGATATTCAGTGAGACTGTGCTGTAGAGGACAGGATAGGGCCTTCATGAAAACTTTCTCCATTCCTAATTCCCTTTTCAACTCCCTATCCCATCTCT---CTCCCTCAGAAAGTGTTGAAA----TGCTATCTTCTCC--TCTCCCCCTGCCACTTGCAGCCCCTCAC-ATCAGGCAGGACAGAAGATTGAGGGAAGGAGCAGTGAGG-TCTGAGCTCTCTAGTTTACTCAGTCTGCCCAGCCATAGGCCACATCCTAAGTCTACCAGTGTCGTTGTCAAAGATTGAGCTGAAGTCACAGAAAGAAAAACAAATACTTTCAGAAATGGGAGCCAGAGTGAACCACAA i canFam3.chr1 C 0 I 274 a score=3358579.000000 s hg38.chr9_GL383541v1_alt 85280 922 + 171286 GTG--------CTACC-AC------AAGCACTGAAGGTGGTGGTGGTTGGGATAGCAAGAGAAGAAAAGACAGCTGACTCTGAGCTTCTATCAGATGCCTTATTTACCTTGAAGTTTT-----GATGTATGAGTTTATGtgcacatgcgcatgcacacacatatatacacacacatTCTTCTAGTAAAGTCCGTAGTGAAATTGGTATCCAATAGCAATTAGCTGAGACTAACAATCCTGTTTTGCCTTAAGTGGCTGAACAGCTCCAGACTAATAGCTGAAATACTGAACCAAGGAAACATGATGTTTTGAAGTCTAACTCCCCTTCTTCCCCATATGTTGTGCAGATTTTAATAGAAGGTGTACTAGGACAGGGAAACACAGCCAGCATCGCACTATTTGAAATCAAGATGACAACCGGCTACTGTATTGGTAAGTGGGCTTCATTTTCATTAAATCA-------AATTGTGAATCTTTTTCTAAAAGTTACTGTTGCCAGAGGGAACTGAATCAATCCTAAAGACCAAC-TATTTTATAGAATGCACTGCATAATGCATACTGGTTTAAATTCTTTGCTAGATTCATTTGAATACTGTATGTT----TTTTGTCTTTAGTGTGGGAAGGCTCATTAGAATCTGCCTGTACAGTCTGGATTAATGAAAGAAATATAGATGCAGGAACTGTAACTTCAGAGCTGCCACCTTAACCTCAACACATTCTGATTAAAATAATTTACAAATTGCTGGAAACTCAGC-------------------------------TTTTTGTAGCATGTGCCAGAAAAGCAGACATTGTATTACCTCCTTTCCC---------TTATTTCT------------------CTCTTGGCAC-ACCACGGCTCTCCTCTTAATAATCACAGTTGTCACTTAGATTTCA-CTTGAGCAGAGTTGGTTGGCTGTCTCTTATCTGCCAGCTTCCAAGAGGGCATAAAGAAAGGATAAACCCTGTCCTATGG s panTro4.chr9 68650695 922 + 137840987 GTG--------CTACC-AC------AAGCACTGAAGGTGGTGGTGGTTGGGATAGCAAGAGAAGAAAAGACAGCTGACTCTGAGCTTCTATCAGATGCCTTATTTACCTTGAAGTTTT-----GATGTATGAGTTTATGTGCACATGCGCATGCACACACATATATACACACACATTCTTTTAGTAAAGTCCATAGTGAAATTGGTATCCAATAGCAATTAGCTGAGACTAACAATCCTGTTTTGCCTTAAGTGGCTGAACAGCTCCAGACTAATAGCTGAAATACTGAACCAAGGAAACATGATGTTTTGAAGTCTAACTCCCCTTCTTCCCCATATGTTGTGCAGATTTTAATAGAAGGTGTACTAGGACAGGGAAACACAGCCAGCATTGCACTATTTGAAATCAAGATGACAACAGGCTACTGTATTGGTAAGTGGGCTTCATTTTCATTAAATCA-------AATTGTGAATCTTTTTCTAAAAGTTACTGTTGCCAGAGGGAACTGAATCAATCCTAAAGACCAAC-TATTTTATAGAATGCACTGCATAATGCATACTGGTTTAAATTCTTTGCTAGATTCATTTGAATACTGTATGTT----TTTTGTCTTTAGTGTGGGAAGGCTCATTAGAATCTGCCTGTACAGTCTGGATTAATGAAAGAAATATAGACGCAGGAACTGTAACTTCAGAGCTGCCACCTTAACCTCAACACATTCTGATTAAAATAATTTACAAATTGCTGGAAACTCAGC-------------------------------TTTTTGTAGCATGTGCCAGAAAAGCAGACATTGTATTACCTCCTTTCCC---------TTATTTCT------------------CTCTTGGCAC-ACCATGGCTCTCCTCTTAATAATCACAGTTGTCACTTAGATTTCA-CTTGAGCAGAGTTGGTTGGCTGTCTCTTATCTGCCAGCTTCCAAGAGGGCATAAAGAAAGGATAAACCCTGTCCTATGG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64806077 922 + 135191526 GTG--------CTACC-AC------AAGCACTGAAGATGTTGGTGGTTGGGATAGCAAGAGAAGAAAAGACAGCTGACTCTGAGCTTCTATCAGATGCCTTACTTACCTCGAAGTTTT-----GATGTATGAGTTTATGTGcacatgcgcatgcacacacatacatacacacacaTTCTTTTAGTAAAGTCCGTACTGAAATTGGTATCCAACAGCAATTAGCTGAGACTAACAATCCTGTTTTGCCTTAAGTGGCCGAACAGCTCCAGACTAATAGCTGAAATACTGAACCAAGGAAACACGACGTTTTAAAGTCTAACTCCCCTTCTTCCCCATATGTTGTGCAGATTTTAATAGAAGGTGTACTAGGACAGGGAAACACAGCCAGCATTGCACTGTTTGAAATCAAGATGACAACCGGCTACTGTATTGGTAAGTGTGCTTCATTTTCATTGAATCA-------AATTGTGAATCTTTTTCTAAAAGTTACTGTTGCCAGAGGGAACTGAATCAATCCTAAAGACCAAG-TATTTTATAGAATGCACTGCATAATGCATACTGGTTTAAATTCTTTGCTAGGTTCATTTGAATACTGTATGTT----TTTTTTCTTTAGTGTGGGAAGGCTCATTAGAATCTGCCTGTACAGTCTGGATTAATGAAAGAAATATAGATGCAGGAACTGTAACTTCAGAGCTGCCACCTTAACCTCAACACATTCTGATTAAAATAATTTACAAATTGCTGGAAACTCAGC-------------------------------TTTTTGTAGCATGTGCCAGAAAAGCAGACATTGTATTACCTCCTTTCCC---------TTATTTCT------------------CTCTTGGCAC-ACCACGGCTCTCCTCTTAATAATCACAGTTGTCACTTAGATTTCA-CTTGAGCAGAGTTGGTTGGCTGTCTCTTATGTGCTAGCTTCCAAGAGGGCATAAAGAAAGGATAAACCCTGTCCTATGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57843114 922 - 122973662 GTG--------CTACC-AC------AAGCACTGAAGATGGTGGTGGTTGGGATAGCAAGAGAAGAAAAGACAGCTGACTCTGAGCTTCTATCAGATGCCTTACTCACCTCGAAGTTTT-----GATGTATGAGTTTATGtgcacatgcgcatgcacacacatacatacacacacaTTCTTTTAGTAAAGTCCGTAGTGAAATTGGTATCCAATAGCAATTAGCTGAGACTAACAATCCTGTTTTGCCTTAAATGGCTGAACAGCTCCAGACTAATAGCTGAAATATTGAACCAAGGAAACATGATGTTTTGAAGTCTAACTCCCCTTCTTCCTCATATGTTGTGCAGATTTTAATAGAAGGTGTACTAGGACAGGGAAACACAGCCAGCATTGCACTGTTTGAAATCAAGATGACAACCGGCTACTGTATTGGTAAGTGGGCTTCATTTTCATTGAATCA-------AATTGTGAATCTTTTTCTAAAAGTTACTGTTGCCAGAGGGAACTGAATCAATCCTAAAGACCAAG-TATTTTATAGAATGCACTGCATAATGCATACTGGTTTAAATTCTTTGCTAGGTTCATTTGAATACTGTATGTT----GTTTGTCTTCAGTGTGGGAAGGCTCATTAGAATCTGCCTGTACAGTCTGGATTAATGAAAGAAATATAGATGCAGGAACTGTAACTTCAGAGCTGCCACCTTAACTTCAACACATTCTGATTAAAATAATTTACAAATTGCTGGAAACTCAGC-------------------------------TTTTTGTAGCGTGTGGCAGACAAGCAGACATTGTACTACCTCCTTTCCC---------TTATTTCT------------------CTCTTGGCAC-ACCACGGTTCTCCTCTTAATAATCACAGTTGTCACTTAGATTTCA-CTTGAGCAGAGTTGGTTGGCTGTCTCTTATGTGCCAGCTTCCAAGAGGGCATAAAGAAAGGATAAACCGTGTCCTATGG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79776262 923 + 112192347 GTG--------CTACC-AC------AAGCACTGAAGACAGTGGTGGTTGGGATAACAATAGAAGAGAAGACAGCTGGCTCTGAGCTTCTATCAGATGCCTTACTCACCTCGAAGTTTT-----GATGTATGAGTTTATGTGCACATGCGCATGCACACATATACATACACACACATTCTTTTAGTAAAGTCCATAGTGAAATTGGTATCCAATAGCAATTAGCTGAGACTAACAATCCTATTTTGCCTTGAATGGCTGAACAGCTCCAGACTAATAGCTGAAATACTGAACCAAGGAAACATGATGTTTTGAAGTCTAACTCCCTTTCTTCCCCATATGTTGTGCAGATTTTAATAGAAGGTGTACTAGGACAGGGAAACACAGCCAGCATTGCACTGTTTGAAATCAAGATGACAACCGGCTACTGTATTGGTAAGTGGGCTTCATTTTCATTAAATCA-------AACTGCGAATCTTTTTCTAAAAGCTACTGTTGCCAGAGGGAACTGAATCAATCCTGAAGACCAAG-TATTTTATAGAATGCACTGCATAATGCATACTGGTTTAAATTCTTTGCTAGGTTCATTTGAATACTGTATGTTG---TTTTGTCTTTAGTGTGGGAAGGCTCATTAGAATTTGCCTGTACTGTCTGGATTAATGAAAGAAACATAGATGCAGCAACTGTAACTTGAGAACTGCCACCTTAACCTTGACATGTTCTGATTAAAATAATTTACAAATTGCTGGAAACTCAGC-------------------------------TTTTTGTAGCATGTGCCAGAAAAGCAGACATTGTATTATCTTCTTTCCC---------TCATTTCT------------------CTCTTGGCAT-ACCACTGCCCTCCTCTTAATAATCACAGTTGTCACTTAGAATTCA-CTTGAGAAGAGTTGGTTGGCTGTCTCTTATGTGCCAGCTTCCAAGAGGGCATAAAGAAAGGGTAAACCCTGTCCTATGG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80856329 923 + 112612857 GTG--------CTACC-AC------AAGCACTGAAGATGGTGGTGGTTGGGATAACAATAGAAGAGAAGACAGCTGGCTCTGAGCTTCTATCAGATGCCTTACTCACCTCGAAGTTTT-----GATGTATGAGTTTATGTGcacatgcgcatgcacacatatacatacacacacaTTCTTTTAGTAAAGTCCATAGTGAAATTGGTATCCAATAGCAATTAGCTGAGACTAACAATCCTATTTTGCCTTGAATGGCTGAACAGCTCCAGACTAATAGCTGAAATACTGAACCAAGGAAACATGATGTTTTGAAGTCTAACTCCCTTTCTTCCCCATATGTTGTGCAGATTTTAATAGAAGGTGTACTAGGACAGGGAAACACAGCCAGCATTGCACTGTTTGAAATCAAGATGACAACCGGCTACTGTATTGGTAAGTGGGCTTCATTTTCATTAAATCA-------AACTGCGAATCTTTTTCTAAAAGCTACTGTTGCCAGAGGGAACTGAATCAATCGTAAAGACCAAG-TATTTTATAGAATGCACTGCATAATGCATACTGGTTTAAATTCTTTGCTAGGTTCATTTGAATACTGTATGTTG---TTTTGTCTTTAGTGTGGGAAGGCTCATTAGAATTTGCCTGTACTGTCTGGATTAATGAAAGAAACATAGATGCAGCAACTGTAACTTGAGAACTGCCACCTTAACCTTGACATGTTCTGATTAAAATAATTTACAAATTGCTGGAAACTCAGC-------------------------------TTTTTGTAGCATGTGCCAGAAAAGCAGACATTGTATTATCTTCTTTCCC---------TCATTTCT------------------CTCTTGGCAT-ACCACTGCCCTCCTCTTAATAATCACAGTTGTCACTTAGAATTCA-CTTGAGAAGAGTTGGTTGGCTGTCTCTTATGTGCCAGCTTCCAAGAGGGCATAAAGAAAGGGTAAACCCTGTCCTATGG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76905381 923 + 107442819 GTG--------CTACC-AC------AAGCACTGAAGATGGTGGTGGTTGGGATAACAATAGAAGAGAAGACAGCTGGCTCTGAGCTTCTATCAGATGCCTTACTCACCTCGAAGTTTT-----GATGTATGAGTTTATGTGCACATgcgcatgcacacatatacatacacacacattcttttAGTAAAGTCCATAGTGAAATTGGTATCCAATAGCAATTAGCTGAGACTAACAATCCTATTTTGCCTTGAATGGCTGAACAGCTCCAGACTAATAGCTGAAATACTGAACCAAggaaacatgatgttttgaagtctAACTCTCCTTCTTCCCCATATGTTGTGCAGATTTTAATAGAAGGTGTACTAGGACAGGGAAACACAGCCAGCATTGCACTGTTTGAAATCAAGTTGACAACCGGCTACTGTATTGGTAAGTGGGCTTCATTTTCATTAAATCA-------AACTGCGAATCTTTTTCTAAAAGCTACTGTTGCCAGAGGGAACTGAATCAATCCTAAAGACCAAG-TATTTTATAGAATGCACTGCATAATGCATACTGGTTTAAATTCTTTGCTAGGTTCATTTGAATACTGTATGTTG---TTTTGTCTTTAGTGTGGGAAGGCTCATTAGAATTTGCCTGTACTGTCTGGATTAATGAAAGAAACATAGATGCAGCAACTGTAACTTGAGAACTGCCACCTTAACCTTGACATGttctgattaaaataatttacaaattgcTGGAAACTCAGC-------------------------------TTTTTGTAGCATGTGCCAGAAAAGCAGACATTGTATTATCTTCTTTCCC---------TCATTTCT------------------CTCTTGGCAT-ACCACTGCCCTCCTCTTAATAATTACAGTTGTCACTTAGAATTCA-CTTGAGAAGAGTTGGTTGGCTGTCTCTTATGTGCCAGCTTCCAAGAGGGCATAAAGAAAGGGTAAACCCTGTCCTATGG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81168813 922 + 108555830 GTG--------CTACC-AC------AAGTACTGAAGATGGTGGTGGTTGGGATAACAATAGAAGAGAAGACAGCTGACTCTGAGCTTCTATCAGATGCCTTACTCACCTCGAAGTTTT-----GATGTATGAGTTTATGTGcacatgcgcatgcacacatatacatacacacacaTTCTTTTAGTAAAGTCCATAGTGAAATTGGTATCCAATAGCAATTAGCTGAGACTAACAATCCTGTTTTGCCTTGAATGGCTGAACAGCTCCAGACTAACAGCTGAAATACTGAACCAAGGAAACATGATGTTTTGAAGTCTAACTCCCCTTCTTCCCCATATGTTGTACAGATTTTAATAGAAGGTGTACTAGGACAGGGAAACACAGCCAGCATTGCACTGTTTGAAATCAAGATGACAACCGGCTACTGTATTGGTAAGTGGGCTTCATTTTCATTAAATCA-------AACTGTGAATCTTTTTCTAAAAGCTACTGTTGCCAGAGGGAACTGAATCAATCCTAAAGACCGAG-TATTTTATAGAATGCACTGCATAATGCATACTGGTTTAAATTCTTTGCTAGGTTCATTTGAATACTGTATGTTG---TTTTGTCTTTAGTGTGGGAAGGCTCATTAGAATTTGCCTGTACTGTCTGGATTAATGAAAGAAACATGGATGCAGCAACTGTAACTTGAGAGCTGCCACCTTAACCTTGACATGTTCTGATTAAAATAA-TTACAAATTGCGGGAAACTCAGC-------------------------------TTTTTGTAGCAAGTGCCAGAAAAGCAGACATTGTATTATCTTCTTTCCC---------TCATTTCT------------------CTCTCGGCAT-ACCACTGCCCTCCTCTTAATAATCACAGTTGTCACTTAGAATTCA-CTTGAGAAGAGTTGGTTGGCTGTCTCTTATGTGCCAGCTTCCAAGAGGGCATAAAGAAAGGGTAAACCCTGTCCTATGG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111403828 882 - 210400635 ----------------------------------CGATGGTGGTGGTTGGGATAGCAATAGAAGAGAAGACAGCTGACTCTGAGCTTCTA-----------------CTCAAAGTTTT-----GATGTATGTGTTTATGTGCACATCCACATGCACACATACATATGCACGCAC--TCTTTTGGCAAAGTCTGTAGTGAAATTGGTATCCAATAGCAATTAGCTGGGACTAAGCATCCTGTTTTGCCTTAAATGGCAAAACAGCTCCAGACTAATAGCTGAGATACTGAACCAAGGAAACATGATGTTTTGAAATCTAACTCCCCTTTTTCCCCATATGTTGCACAGATTTTAATAGAAGGTGTACTAGGACAGGGAAACACGGCCAGCATTGCACTGTTTGAAATCAAGATGACAACCGGCTACTGCATTGGTGAGTAGGCTTCATTTTCATTGAATCA-------AATTGTGAATCTTTTCCTAAAAGCTGCTGATGCCAGAGGGAACTGAATTAATTCTAAAGACCAAG-TATTTTATAGAATGCACTGCATAATGCATACCGGTTTAAATTCTTTGCTCGGGTCACTTGAATGCTGTATATT----GTTTGTCTTTAGTGTGGGAAGGCTCATTAGAATTTGCCTGGACTGTCTGGGTTAATGAAAGAAGCATAGATGCAGCAACTGTAACTTCAGAGCTTCCACCTTAACCTTGGCATGTTCTGATGTAAATAATTTACAAACTGCTGGAAAGTCAGA-------------------------------TTTTTGTAGCATGTTCCAGAAAATCAGACATTGTTTGGCCTCCTTTCCC----------CATTTCT------------------CTCTTGGAAC-ACCATTGCCCTCATCTTAATAATCACAATTGTCACTTAGATTTCA-CTTGA-CAGAGCTGGTTGGCTGTCTTATATGTGCCAGCTTCCAAGAGGGCACAAAGAAAGGATAATCCCTGTCCTATGG i calJac3.chr1 C 0 C 0 s mm10.chr19 38053926 918 - 61431566 GTGAAATCTGTCTACC-ACCTACATGAACACAGGGGAAGGTGGAGGTTAGGGTAGC-ACGGAAGAGCATAGA----ACTCCAGGCTTCTGATGGAGACTTCACTCAGGTCAAAGTCCTCAGGGTATGTATGTGTTCGTGTG----TGCACAGGTACAAATGCACACATACAC---------------AGTCCATAATAAAATT--CATTCAGCAGCTATGAAC--------------------CGTACTGAGT-----AACAGCTCCTCACTAAGAACTGAAATTTTGGAC--AAGAAACACAGTGTTTTGATGCCTGATTCC---TTTCCCCTGTATGCTGTACAGATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGGTGAGTGAGTTTTGTGGTTGTGGCAGCG-------GAATGCAAATCTCTTCCTA----CGTCCACAGCCAGAAAGCAGTAAATCGATCCTGAAGGCTGAA-TGAGTCTCGGAGCATGATGCAAAATG----CTAGCATTTGTTCTTTGCTAGGGTCACCTGAAGATGGGACATTGATCCTCCATCTTCCGTGTGGAAAGGCTCATTAGCATTTGCTCTAACTGGCTGGGTTAACAAGCAAAAC----------CAACTTCTCCCTCGGGCGATGCTCTCTAACCCCACCCAGCTCTGATAAAAATAATTGCTGGTTTGCTGTGAACTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCCCTTTGCCAGAAGAGCAGACAATCTATCCTGTCATCTACT---------TTCTTGTTAAActgctgctgctgctgctgctgctgctgctgctgctgctATCTTAATGATCTCTATTGTCACTTAGATCCTAGCTGGTGTAGGCAGGATCAATTGTC---TACGTGACAG-TTTTGAGAAGGCAGGAAGAGAGGATAGTCCCTGGTCCACGG i mm10.chr19 C 0 I 63 s canFam3.chr1 35293607 858 - 122678785 GTG--------CTACCAAC------AAGCACTAGAGAAGG-GGTGGTTGGGATAACAGTAGAAG-----ACAGTTGACTCTAAGCTTTTACTGGACACCTCACTCACCTTGTa----------ca----------cacacacacacacacacacacacacacacacacacacaTATTCTTTTAATAAAACCCACTGTGAGATTGGTACCCAGTAGCAATTAGCTGAGACAAGCAATCTCGCTCTGCCTTGAATTGCTGAATAGCTCCTGACCAGTCTCTGAAATACTGAGCCAAGGAACAACAGTG-CTGGAAGCCTAACTCC-TTTCTTCCTCATGTGTCATGCAGATTTTAATAGAAGGTGTGCTAGGACAGGGAAGCACGGCCAGCATCGCGCTCTTTGAAATCAAGATGACAACCGGCTACTGTATTGGTAAGTGGGTTTCATTTTCATTGTACCAGAAGGTGAATTGTGAATCTTCTTCTAAAA---TCTGTTGCCAGAGGGAATCGAATCAATCCTAAAGGGCAAGCTGTTTTATAGCAGTCAGTGCATAATGCAGAGTAGCTTAGATGCT------GCTTCACTTGAATGGTGTCCCGTCAC-TCCTGTGGGCGGTGGAGGAAGGCTCACTGGGGTCTGCCTGGACTGGTTGCATTAACGAAGGGAAAGTAGATGCAGCAACTGTAACCT--GACTTGCTGCCCAAACCTCAACACATTCTGATAAAAATAATTTCCAGCTTGCTGTGAGCTCAGC-------------------------------TTC----------TGCCGGAATAGCAAGCATCATATCGCCTTTCTTCCTCATTGCACTCCATTTCT------------------CTCCTA-CAT-ACCTTTACCC-CATCTTTGTGTCCCCAG-CGTTGCTTGGATGCCC-CTGGAGCAGGGCTGCCTGGATGCCTCTTCCATGCCGGCCAC-------------------------------------- i canFam3.chr1 I 274 C 0 a score=557256.000000 s hg38.chr9_GL383541v1_alt 86202 174 + 171286 TGGTTCAGTTCCTATTTGTCTA-CATTGAAGCTAGTTCTGCATATGGCAAATACTG------CTGAGGAAGGACAAGCTGTGCAGTGGAGAGGCGCA---GGGAGGAGGAGAGGAAATTGGAGAGGACTGAATAGGGACAGTGCACTGGAGCAGGAGTTTCAAGAAGGAGAAGAATTTAGTTAA s panTro4.chr9 68651617 174 + 137840987 TGGTTCAGTTCCTATTTGTCTA-CATTGAAGCTAGTTCTGCATATGGCAAATACTG------CTGAGGAAGGACAAGCTGTGCAGTGGAGAGGCGCA---GGGAGGAGGAGAGGAAATTGGAGAGGACTGAATAGGGACAGTGCACTGGAGCAGGAGTTTCAAGAAGGAGAAGAATTTAGTTAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64806999 174 + 135191526 TGGTTCAGTTCCTATTTGTCTA-CAGTGAAGCTAGTTCTGCATATGACAAATACTG------CTGAGGAAGGACAAGCTGTGCAGTGGAGAGGCGCA---GGGAGGAGGAGAGGAAATTGGAGAGGACTGAATAGGGACAGTGCACTGGAGCAGGAGTTTCAAAAAGGAGAAGAATTTAGTTAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57844036 171 - 122973662 TGGTTCAGTTCCTATTTGTCTA-CACTGAAGCTAGTTCTGTATATGACAAATACTG------CTGAGGAAGGACAAGCTGTGCAGTGGAGAGGCGCA---GGGAGGAGGAGAGGAAATTGGAGAGGACTGAATAGGGACAGTGCACTGGAGCAGGAGTTTC---AAGGAGAAGAATTTAGTTAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79777185 172 + 112192347 TGGTTCAGTCTCTATTTGTCTA-CACTGAAGCTAGTTCTGTATATGATAACTACTG------CTGAGGAAGGACAAGCTGTGCAGTG--GGGGCGCA---GGGAGGAGGAGAAGAAATTGGAGAGGACTGAATAGGGACAATGCATTGGAGCTGGAGTTTCAAGAAGGAGAAGAATTTAGTTAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80857252 172 + 112612857 TGGTTCAGTCTCTATTTGTCTA-CACTGAAGCTAGTTCTGTATATGATAACTACTG------CTGAGGAAGGACAAGCTGTGCAGTG--GGGGCGCA---GGGAGGAGGAGAAGAAATTGGAGAGGACTGAATAGGGACAATGCATTGGAGCTGGAGTTTCAAGAAGGAGAAGAATTTAGTTAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76906304 172 + 107442819 TGGTTCAGTCTCTATTTGTCTA-CACTGAAGCTAGTTCTGTATATGATAACTACTG------CAGAGGAAGGACAAGCTGTGCAGTG--GGGGcgca---gggaggaggagaagaaattgGAGAGGACTGAATAGGGACAATGCATTGGAGCTGGAGTTTCAAGAAGGAGAAGAATTTAGTTAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81169735 172 + 108555830 TGGTTCAGTTTATATTTGTCTA-CACTGAAGCTAGTTCTGTATATGATAACTACTG------CTGAGGAAGGACAAGTTGTGCAGTG--GGGGCGCA---GGGAGGAGGAGAAGAAATTGGAGAGGACTGAATAGGGACAATGCATTGGAGCTGGAGTTTCAAGAAGGAGAAGAATTTAGTTAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111404710 169 - 210400635 TGGTTCAGTTTCCATTTGCATA-CACTGAAGTTAGTTCTTTATATGATAAATACTG------CTGAGGAAGGACAAGCGATGCAGTG--CAGGTGCC---GGGAGGAGGAGAGAAAATTGGAGAGGACTGAATAGGGAAAACACATTGGAGCTGGAGTTTC---AAGAAGAAGAATTTAGTTAA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35294465 178 - 122678785 ----TCACTTTCTATTTGTCTGCCATTGACACTATTTCCTTAGAAGCTGAAGACGGGCCCCCACGGAGGAGGCCAGGCCAGGCAGTG--AGGGTGCAGCGGGGAGGAAGACAGGAGATCAGACAGGCCTGAACATCAGAGATGCGTTTGAGCTGGGGTTTCAGGAAGGAGCGGGTTTCAGTGAA i canFam3.chr1 C 0 C 0 e mm10.chr19 38054844 63 - 61431566 I a score=2338495.000000 s hg38.chr9_GL383541v1_alt 86376 707 + 171286 GTGGAGGTGCAGGGTAGGAAGGCAAGGGTTCTCCATGGCCAGACCCCTGTGGGGAGAAAGAAACAGGGCAGGTTCAGGCAAAGGCAAGAGGCTGAGTAGGGTGTTTGAAGTGA-GACCAGGACTGCTAAGGGAGTTTGTGATGGAAGAGTGTGGATGC-----AGGATGTGGAGCTTGGACCTGCTGAATCATGTGG---------------GTCAGC-------------CAGCAGGGGAGAAGTGTGCAGCTGCACTTTC-A---GATGACTCCAGCTGCCACGTGGAAAATGAGTTGGGTACAAAGAAA-----ATGCATAGCAGGTGGGAAAACCCCTAGGAAGCAGCTGTGACATTACAGAGGGGGCATAATGAGGGTAATACTGAATTAGCAG--TGGAATTGG-----------------AAAAAGGCAGTAGAATTGAGAGATTTTTCAGCACTGACAACTCT-----TGAAGGCTAAATGAATGTGACGGGGAAGA-GAAAGGAGAGTCAAAGAATATTCTG------AACGACAACAACAACAAAAAAGCCTTTGCTAATTCCCTTACGTTTCACTTGTCTGTTTTGACCT--CAATGATATCTCTAGGGCAAGTGAAAGAAAACA---------GAC----------------CATTTTCTGAAGATACAGTGAG-----GCTCAG--GCTCTTTTCCTTGAGCCTCCCGCTGGGCTTCCACCTGGCATCTGC-ACAGCTTGTGAACGACAGGGA--AGTCAGACACCTCTGGTGGAGCGCCacctgctggctcagtcagcttactg s panTro4.chr9 68651791 708 + 137840987 GTGGAGGTGCAGGGTAGGAAGGCAAGGGTTCTCCATGGCCAGACCCCTGTTGGGAGAAAGAAACAGGGCAGGTTCAGGCAAAGGCAAGAGGCTGAGTAGGGTGTTTGAAGTGAAGACCAGGACTGCTAAGGGAGTTTGTGATGGAAGAGTGTGGATGC-----AGGATGTGGAGCTTGGACCTGCTGAATCATGTGG---------------GTCAGC-------------CAGCAGGGGAGAAGTGTGCAGCTGCACTTTC-A---GATGACTCCAGCTGCCACGTGGAAAATGAGTTGGGTACAAAGAAA-----ATGCATAGCAGGTGGGAAAACCCCTAGGAAGCAGCTGTGACATTACAGAGGGGGCATAATGAGGGTAATACTGAATTAGCAG--TGGAATTGG-----------------AAAAAGGCAGTAGAATTGAGAGATTTTTCAGCACTGACAACTCT-----TGAAGGCTAAATGAATGTGACGGGGAAGA-GAAAGGAGAGTCAAAGAATATTCTG------AACGACAACAACAACAAAAAAGCCTTTGCTAATTCCCTTACGTTTCACTTGTCTGTTTTGACCT--CAATGATATCTCTAGGGCAAGTGAAAGAAAACA---------GAC----------------CATTTTCTGAAGATACAGTGAG-----GCTCAG--GCTCTTTTCCTTGAGCCTCCCACTGGGCTTCCACCTGGCATCTGC-ACAGCTTGTGAACGACAGGGA--AGTCAGACACCCCTGGTGGAGCGCCacctgctggctcagtcagcttactg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64807173 708 + 135191526 GTGGAGGTGCAGGGTAGGAAGGCAAGGGTTCTCCATGGCCAGACCCCTGTGGGGAGAAAGAAACAGAGCAGGTTCAGGCAAAGGCAAGAGGCTGAGTAGGGTGTTTGAAGTGAAGACCAGGACTGCTAAGGGAGTTTGTGATGGAAGAGTGTGGATGC-----AGGATGTGGAGCTTGGACCTGCTGAATCATGTGG---------------GTCAAC-------------CAGCAGGGGAGAAGTGTGCAGCTGCACTTTC-A---GATGACTCCAGCTGCCACGTGGAAAATGAGTTGGGTACAAGGAAA-----ATGCATAGCAGGTGGGAAAACCCCTAGGAAGCAACTGTGACCTTACAGAGGGGGCATAATGAGGGTAATATTGAATTAGCAG--TGGAATCGG-----------------AAAAAGGCAGTAGAATTGAGAGATTTTTCAGCACTGACAACTCT-----TGAAGACTAAATGAATGTGACAGGGAAAA-GAAAGGAGAGTCAAAGGATATTCTG------aacaacaacaacaacaacaaAGACTTTGCTAATTCCCTTAAGTTTCACTTCTCTGTTTTGACCT--CAATGATATCTCTAGGGCAAGTGAAAGAAAACA---------GAC----------------TATTTTCTGAAGATACAGTGAG-----GCTCAG--GCTCCTTTCCTTGAGCCTCCCACTGGGCTTCCACCTGGCATCTGC-ACAGCTTGTGAACAACAGGGA--AGTCAGACACCCCTGGTGGAGCGCCacctgctggctcagtcagcttactg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57844207 714 - 122973662 GTGGAGGTGCAGGGTAGGAAGGCAAGGATTCTCCATCACCAGACCCCTGTGGGGAGAAAGAAACAGAGCAGGTTCAGGCAAAGGCAAGAGGCTGAGTAGGGTGTTTGAAGTGAAGACCAGGACTGCTAAGGGAGTTTGTGATGGAAGAGTGTGGATGC-----AGGATGTGGAGCTTGGACCTGCTGAATCATGTGG---------------GTCAGC-------------CAGCAGGGGAGAAGTGTGCAGCTGCACTTTC-A---GATGACTCCAGCTGCCACGTGGAAAATGAGTTGGGTACAAGGAAA-----ATGCATAGCAGGTGGGAAAACCCCTAGGAAGCAGCTGTGACCTTACAGAGGGGGCATAATGAGGGTAATATTGAATTAGCAG--TGGAATCGG-----------------AAAAAGGCAGTAGAATTGAGAGATTTTTCAGCACTGACAGCTCT-----TGAAGGCTAAATGAATGTGATGGGGAAGA-GAAAGGAGAGTCAAAGAATATTCTGaacaacaacaacaacaacaacaacaaAGCCTTTGCTAATTTCCTTAAGTTTCACTTCTCTGTTTTGACCT--CAATGATACCTCTAGCGCAAGTGAAAGAAAATA---------GAC----------------TATTTTCTGAAGACACAGTGAG-----GCTCAG--GCTCCTTTCCTTGAGCCTCCCGCTGAGCTTCCACCTGGCATCTGC-ACAGCTTGTGAACGACAGGGA--AGTCAGACACCCCTCGTGGAGCGCCacctgctggctcagtcagcttactg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79777357 708 + 112192347 GTGGAGGTGCAGGGTAGGAAGGCAAGGGTTCTCTGTGGCCAGACTTCTGTGGGGAGAAAG-AACAGAGCAGGTTCAGGCAAAGGGAAGAGGCTGAGTAAGGTGTTTGAAGTGAAGACCAAGACTGCTAAGGGAGTTTGTGATGGAAAAGTGTGGATGC-----AGGATGTGGAGCTTGGACCTGCTGAATCATATGG---------------GTCAGC-------------CAGCAGGGGAGAAGTGTGCAGCTGCACTTTC-A---GATGACTCCAGCTGTCACGTGGAAGATGAGTTGGGTACAAGGAAA-----ATACACAGCAGGTGGGAAAACCCCTAGGAAGCAGCTGTGACCTTACAGAGGGGACTTAATGAGGGCAATACTGAATTAGCAG--TGGAATCGG-----------------AAAAAGGCAGTAGAATTGAGAGATTTTTCAGCACTGACAGCTCT-----TGAAGGCTAAATGAACGTGGCGGGGAAGA-GAAAGGACAGTCAAAGAAGGTTCTG------AACAACAACAACAACAAAAAAGCCTTTGCTAATCCCCTGAAGTTTCACTTCTCTGTTTTGATCT--CAATGATGTCTCTAGGGCAAGTGAAAGAAAATA---------TAC----------------CATTTTCTGAAGATACAGTGAG-----GCTCAG--GCTCCCTTCCTTGAGCCTCCCTCTGGGCTCCCACCTGGCATCTGTAAAAGGTTGCAAACGACAGAGA--AGTTAGACACCCCTGGTGGAGCGCCACCTGCTGGCCCAGTCAGCTTACTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80857424 708 + 112612857 GTGGAGGTGCAGGGTAGGAAGGCAAGGGTTCTCTGTGGCCAGACTTCTGTGGGGAGAAAG-AACAGAGCAGGTTCAGGCAAAGGGAAGAGGCTGAGTAAGGTGTTTGAAGTGAAGACCAAGACTGCTAAGGGAGTTTGTGATGGAAAAGTGTGGATGC-----AGGATGTGGAGCTTGGACCTGCTGAATCATATGG---------------GTCAGC-------------CAGCAGGGGAGAAGTGTGCAGCTGCACTTTC-A---GATGACTCCAGCTGTCACGTGGAAGATGAGTTGGGTACAAGGAAA-----ATACACAGCAGGTGGGAAAACCCCTAGGAAGCAGCTGTGACCTTACAGAGGGGACTTAATGAGGGCAATACTGAATTAGCAG--TGGAATCGG-----------------AAAAAGGCAGTAGAATTGAGAGATTTTTCAGCACTGACAGCTCT-----TGAAGGCTAAATGAACGTGGCGGGGAAAA-GAAAGGACAGTCAAAGAAGGTTCTG------aacaacaacaacaacaaaaaAGCCTTTGCTAATCCCCTGAAGTTTCACTTCTCTGTTTTGATCT--CAATGATGTCTCTAGGGCAAGTGAAAGAAAATA---------TAC----------------CATTTTCTGAAGATACAGTGAG-----GCTCAG--GCTCCCTTCCTTGAGCCTCCCTCTGGGCTCCCACCTGGCATCTGTAAAAGGTTGCAAACGACAGAAA--AGTTAGACACCcctggtggagcgccacctgctggcccagtcagcttactg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76906476 708 + 107442819 GTGGAGGTGCAGGATAGGAAGGCAAGGGTTCTCTGTGGCCAGACTTCTGTGGGGAGAAAG-AACAGAACAGGTTCAGGCAAAGGGAAGAGGCTGAGTAAGGTGTTTGAAGTGAAGACCAAGACTGCTAAGGGAGTTTGTGATGGAAAAGTGTGGATGC-----AGGATGTGGAGCTTGGACCTGCTGAATCATATGG---------------GTCAGC-------------CAGCAGGGGAGAAGTGTGCAGCTGCACTTTC-A---GATGACTCCAGCTGTCACGTGGAAGATGAGTTGGGTACAAGGAAA-----ATACACAGTAGGTGGGAAAACCCCTAGGAAGCAGCTGTGACCTTACAGAGGGGACTTAATGAGGGCAATACTGAATTAGCAG--TGGAATCGG-----------------AAAAAGGCAGTAGAATTGAGAGATTTTTCAGCACTGACAGCTCT-----TGAAGGCTACATGAATGTGGCTGGGAAGA-GAAAGGACAGTCAAAGAAGGTTctg------aacaacaataacaacaaaaaagccttTGCTAATCCCCTGAAGTTTCACTTCTCTGTTTTGATCT--CAATGATGTCTCTAGggcaagtgaaagaaaata---------tac----------------cATTTTCTGAAGATACAGTGAG-----GCTCAG--GCTCCCTTCCTTGAGCCTCCCTCTGGGCTCCCACCTGGCACATGTAAAAGGTTGCAAACGACAAACA--AGTTAGACACCCCTGGTGGAGCGCCACCTGCTGGCCCAGTCAGCTTACTG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81169907 708 + 108555830 GTGGAGGTGCAGGGTAGGAAGGCAAGGGTTCTCTGTGGCCAGACTTCTGTGGGGAGAAAG-AACAGAGCAGGTTCAGGCAAAGGGAAGAGGCTGAGTAAGGTGTTTGAAGTGAAGACCAAGACTGCTAAGGGAGTTTGTGATGGAAAAGTGTGGATGC-----AGGATGTGGAGCTTGGACCTGCTGAATCATATGG---------------GTCAGC-------------CAGCAGGGGAGAAGTGTGCAGCTGCACTTTC-A---GATGACTCCAGCTGTCATGTGGAAGATGAGTTGGGTACAAGGAAG-----ATACACAGCAGGTGGGAAAACCCCTAGGAAGCAGCTGTGACCTTACAGAGGGGGCTTAATGAGGGCAATACTGAATTAGCAG--TGGAATCGG-----------------AAAAAGGCAGTAGAATTGAGAGATTTTTCAGCACTGACAGCTCT-----TGAAGGCTAAATGAATGTGGCGGGGAAGA-GAAAGGACAGTCAAAGAAGGTTCTG------aacaacaacaacaacaaaaaAGCCTTTGCTAATCCCCTGAAGTTTCACTTCTCTGTTTTGATCT--CAATGATGTCTCTAGGGCAAGTGAAAGAAAATA---------TAC----------------CATTTTCTGAAGATACAGTGAG-----GCTCAG--GCTCCCTTCCTTGAGCCTCCCTCTGGGCTCCCACCTGGCATCTGTAAAAGGTTGCAAACGACAGACA--AGTTAGACACCcctggtggagcgccacctgctggcccagtcagcttactg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111404879 698 - 210400635 GTGGAGGTGCAGGGTAGGAAGGCAAGGGTTCTCTAAGGTCAGACCCCTGTGGGGAGAAAG-AACAGTGCAGGTTCAGGCAAAGGTAAGAGGCTAAGCAAGGTGTTTGAGATGAAGACCAGGACTGCTAAGAGAGTTTGTGTTGGAAGAGTGTGGATGC-----AAGATGTGGCGCTTGGACCTGCCGAATCATGTAG---------------GTCAGC-------------CAGCAGGGGAGAAGTGTGCAGCTGTGTTTTC-A---CATGACTCCAGCTGCCACGTGGAAAATGAGTTGGGTAC-TGGAAA-----ATACATAGCAGGTGGGAAAACCCCTAGGAAGTGGCTGTGACCTTACAGAGGGGACATAATGAAGATAATATTGGATTAGCAG--TGAAATCAG-----------------AAAAAGGCTGTAAAATTGAGAGATTTCTCAGCACTGCCAGCTCT-----TGAAGGCTTAATGAATGTGGCGGGGAAAA-GAAAGGAGAGTCAAGGAAGATTCTG------AACAACGACAAC-------AAGCCTTTGCTAATTCCCTAAAGTTTCACTTCTCTGTTTTGACCTTCCGATGATGTCTCTAGGGCAAGTGAAAGAAAACA---------GAC----------------CCTTTTCTGAAGGTACAGTGAG-----GCTTAG--TCTCCCTTCCTTGAGCCTCGCGCTGGGCTCCCACCTGGCATCTGC-ACAGGCTGTGAATGACACACA-----CAAACACCCCTGGCGGAGCgccacctgctggctcagtcagcttactg i calJac3.chr1 C 0 C 0 s mm10.chr19 38054907 681 - 61431566 GCGAAGGTGCACAT--GGGAGGAACGGGTTCTTTGGGG---GGCTGAGGCTGCGAGATCTGAGCAGA-CAGGTGCAGACCCCAG-----AGCTGAGT-----------TGTCAGAACC-------CTCAGGGGGCTTCCTATAGAAACA---GGACTC-----AGGGCAGGGAGCCTGGCTTTCTGGAATTATGAGGTAGGGAGGTGCTAGAGTTAGC-------------CTGCAGGGGACAGGCATGCAGCTGTGGCTTCAA---GATGATGGCAGTGGT------GTCCATGAACTGGAAACAAGGAAATACAGATACATAGGACCTAGGAAAATCCC--AGAAGAAAC-ACGGATTTGTAGGGATTATAGAATGAGG---ACCTTAAACTGGGGGGTTGGGATCAGAGAGTAGAAAAGAAAAAAAAAAATCAGTAGATCTGAGAGACACCTCAGCATTGACAATATTTAGACTGGAGACTCAGC-----------TGAAGT-CAGTGAAGGGTTAATGCTGCTCCTG------AACAA-------------GGAGCCTACATGAATGCCCTGTGCTCTGGCTTCTATGTTTGGTCTTT-CACTGATACCTCTAATGCAA-CGAAGAAAAAGA---------GACTAAAAAAAAAAAAAAGTACTTTATGTAGATGCAGAGAACTTCCATTCAG--TCTCC-TCCTTTGAGTAGTCTG-GGTGCTGCCATTCCACAC-----ACAG-------------AAGC--AGTCAGACACATTTGG-GGAGCTCC----GCTGGATCAGTCC-CTGACTG i mm10.chr19 I 63 I 282 s canFam3.chr1 35294643 685 - 122678785 GTGCAGGTGCAGGGGAAGAGGGGAGGTGCTCTCTGTGGGATGCCCCCAGTGTGGAGGAGG-CCCAGAGCTTGCTCACCCACAGGCCAGAAGCC-AGGACGGTGTTTGAAGTGCGAATCGGGACCGCCAAGGGAGTC--CTAGGGAAGTCTCTGGATCCCAGCTGGGCTGTGGAGTGTGGAT------GGTTCTGTG----------------GTCAGCAAGTGCTCCACGTCAGCAGAGGATGAGCCCCTGCCCGCATCCTT-ACATGGTGACTCTGAGGGGCCCTTGGCAAATGACTTAGAAACAAGAAAA-----TAACACAGGAG--AGGAAATCCCCCAGGAAGTGGTTGTAACCTTACAAAAAGGGC-----------------------------CTGAATGGG-----------------GAAAAGGTGGGAGATTTGAGAGATTTTTCAACAGTGACAGCCCT-----TGGAGTTTGACCAGCTGTGGAGAGGAAGAGGAAGGGAGAGTCAGAGAA--TTCTG------AATAA----------AAAAGAGCCTTTGCTGATCCCC-----TCTCAACTCTGTGTTTTGCCTTC-CAAGGATAATACTAAGGCAAGTGGAAGAAAACATGGGAATGTGAC----------------CATGTTCTGAAGGTACAGTGGG-----GTTAGACCGCTGCGCCCCCTGGTAGTGCCCTCGCTCACCCCCTGGGGGCTGGT-GTGGATCCCAGAGTACACTCACCAGATGGACGCCCCTGGTGCAGCAGCACCTGCTGGCCC--TCAGCTCCCTG i canFam3.chr1 C 0 C 0 a score=49392.000000 s hg38.chr9_GL383541v1_alt 87083 13 + 171286 agcct--cagcctct s panTro4.chr9 68652499 13 + 137840987 agcct--cagcctct i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64807881 13 + 135191526 agcct--cagcctct i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57844921 13 - 122973662 agcct--cagcctct i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79778065 13 + 112192347 AGCCT--CAGCCTCT i rheMac3.chr15 C 0 I 103 s macFas5.chr15 80858132 13 + 112612857 agcct--cagcctct i macFas5.chr15 C 0 I 4 s papAnu2.chr15 76907184 13 + 107442819 AGCCT--CAGCCTCT i papAnu2.chr15 C 0 I 4 s chlSab2.chr12 81170615 13 + 108555830 agcct--cagcctct i chlSab2.chr12 C 0 I 4 s calJac3.chr1 111405577 13 - 210400635 agcct--cagcctct i calJac3.chr1 C 0 I 4 s canFam3.chr1 35295328 15 - 122678785 CGccctgcagcctct i canFam3.chr1 C 0 C 0 e mm10.chr19 38055588 282 - 61431566 I a score=236682.000000 s hg38.chr9_GL383541v1_alt 87096 73 + 171286 ----tggcatccgtaaaatgggaataaaaagcttccctcctaggattcttaggaggaggaat---atcctggttatgaaa s panTro4.chr9 68652512 76 + 137840987 ----tggcatccgtaaaatgggaataaaaagcttccctcctaggattcttaggaggaggaatgatatcctggttatgaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64807894 76 + 135191526 ----tggcatccgcaaaatgggaataaaaagcttccctcctaggattcttaggaggaggaatgatatcctggttatgaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57844934 76 - 122973662 ----tggcatccgtaaaatgggaataaaaagcttccctcctaggattcttaggaggaggaatgatatcgtggctatgaag i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79778181 76 + 112192347 ----tgtcatctgtaaaatgggaataaaatgcttccctcctaggattcttgggaggaggaatgagatcgtggctatgaag i rheMac3.chr15 I 103 C 0 s macFas5.chr15 80858149 76 + 112612857 ----tgtcatctgtaaaatgggaataaaatgcttccctcctaggattcttgggaggaggaatgagatcgtggctatgaag i macFas5.chr15 I 4 C 0 s papAnu2.chr15 76907201 76 + 107442819 ----tgtcatctgtaaaatgggaataaaatgcTTCCCTCCTAGGATTCTTGGGAGGAGGAATGAGATCGTGGCTATGAAG i papAnu2.chr15 I 4 C 0 s chlSab2.chr12 81170632 76 + 108555830 ----tgtcatctgtaaaatgggaataaaatgcttccctcctaggattcttgcgaggaggaatgagatcgtggctatgaag i chlSab2.chr12 I 4 C 0 s calJac3.chr1 111405594 76 - 210400635 ----cgtcacctgtaaaatgataataaaatgcttccctcctaggattcttgggacaacgaatgagatcgtggctatgaaa i calJac3.chr1 I 4 C 0 s canFam3.chr1 35295343 80 - 122678785 ctttctccacttgcaaaatagatataaaatgcttccctcataggaataacatggaagctgatgggatcataagtatgaag i canFam3.chr1 C 0 C 0 e mm10.chr19 38055588 282 - 61431566 I a score=1746538.000000 s hg38.chr9_GL383541v1_alt 87169 481 + 171286 ataattggtatatacagtgctggacaTCCAAAACATGTTAATTGCCTTTCTTCAAATGATGTGGTGACTTCTGATTTGTTT---------------------------------------AAAAC-AAAAGGA-TGCCAACACTTTTATCTTGTTAAACTCTATGATCACACTCTGACTT---CTTTCTTTCtgggtactttatctgcctctctccattgctcatctgtaaaatgaggttagtaacagtgcctatgtcatggggctgctttgaagattgaataagttaatttatgtaaagtgctcagaatggagcctggcatatTGAGGAATATTTTGCTTTTTATTTTACTCTTAGGCAGCATTTGGCACTGAATGTTAGGGCATTGGCTAGCAGACACTGTGGTGGAAACATTGAAAATGAAAATCTTAGAAATGTTCAGTGCTTGCTAATGT-AAAAACACATTGCTGACTACaccagtcaagatcctggcaggaaggaggaaac------------------agagggtacagtcaacct s panTro4.chr9 68652588 481 + 137840987 ataattggtatatacagtgctggacaTCCAAAACATGTTAATTGCCTTTCTTCAAATGATGTGGTGACTTCTGATTTGTTT---------------------------------------AAAAC-AAAAGGA-TGCCAACACTTTTATCTTGTTAAACTCTATGATCACACTGTGACTT---CTTTCTTTCTGGGTActttctctgcctctctccattgctcatctgtaaaatgaggttagtaacagtgcctatgtcatggggctgctttgaggattgaataagttaatttatgtaaagtgctcagaatggagcctggcatatTGAGGAATATTTTGCTTTTTATTTTACTCTTAGGCAGCATTTGGCGCTGAATGTTAGGGCATTGGCTAGCAGACACTGTGGTGGAAACATTGAAAATGAAAATCTTAGAAATGTTCAGTGCTTACTAATGT-AAAAACACATTGCTGACTACaccagtcaagatcctggcaggaaggaggaaac------------------agagggtacagtcaacct i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64807970 467 + 135191526 ataattggtatatacagtgctggacaCCCAAAACATGTTAATTGCCTTTCTTCAAATGATGTGGTGACTTCTGATTTGTTT---------------------------------------AAAAC-AAAAGGA-TGCCAACACTTTTATCTTGTTAAACTCTATGATCACACTCTGACTT---CTTTCTTTCTGGGTActttctctgcctctctccattgctcatctgtaaaatgaggttagtaaca--------------gggctgctttgaggattgaataagttaatttatgtaaagtgctcagaatggagcctggcatatTGAGGAATATTTTGCTTTTTATTTTACTCTTAGGCAGCCTTTGGCACTGAATGTTAGGGCATTGGTTAGCAGACACTGTGGTGGAAACATTGAAAATGAAAATCTTAGAAATGTTCAGTGCTTGCTAATAT-AAAAACACGTTGCTGACTACaccagtcaagatcctggcaggaaggaggaaac------------------agagggtacagtcaacct i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57845010 480 - 122973662 ataattggtatatacagtgctggacatgtaagACATGTTAATTGCCTTTCTTCAAATGATGTGGTGACTTCTGATTTGTTT---------------------------------------AAAAC--AAAGGA-TGCCGACACTTTTATCTTGTTAAACTCTATGATCACAGTCTGACTT---CTTTCTTTCTGGGTActttctctgcctctctccattcctcatctgtaaaatgaggttagtaacagtgcctatgtcatggggctgctttgagggttgaataagttaatttatgtaaagcgctcagaatggagcctggcatatTGAGGAATATTCTGCTTTTTATTTTACTCTTAGGCAGCCTTTGGCACTGAATATTAGGGCATTGGTTAGCAGACACTGTGGTGGAAACATTGAAAATGAAAATCTTAGAAATTTTCAGGGCTTGCTAATGT-AAAAACACATTGCTGACTACACCAGTCAAGATCCTGGCAGGAAGGAGGAAAC------------------AGAGGGTACActcaatct i nomLeu3.chr1a C 0 I 142 s rheMac3.chr15 79778257 475 + 112192347 atgattggtatatacagtgctgggcatccaAGACATG----TTGCCTTTCTTCAAATGATGTGGTGACTTCTGATTTGTTT---------------------------------------GAAAC-AAAAGGA-TGCCAACACTTTTAACTCGTTAAACTCTATGATCATGCTCTCACTT---CTTTCTTTCTGGGTActttctctgtctctttccattcctcatctgtaaaatgaggttagtaacagtgcctatgtcatggggctgctttgaggattgaataagttaatttatgtaaagtgctgagaatgaagcctggcacatTGAGGAATATTTTGCTTTTTATTTTACTCTTAGGCAGCCTTTGGCACTGAATGTTAGGGCATTGGTTAGCAGACACTGTGGTGGAAACATTGAAAATGAAAATCTTAGAAATTTTCAGTGCTTGCTAATGT-AAAAACACATTGCTGACtataccagtcaagatcctggcaggaaggaggaaac--------------------aggatacactcaacct i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80858225 475 + 112612857 atgattggtatatacagtgctgggcatccaAGACATG----TTGCCTTTCTTCAAATGATGTGGTGACTTCTGATTTGTTT---------------------------------------GAAAC-AAAAGGA-TGCCAACACTTTTAACTCGTTAAACTCTATGATCATGCTCTCACTT---CTTTCTTTCTGGGTActttctctgtctctttccattcctcatctgtaaaatgaggttagtaacagtgcctatgtcatggggctgctttgaggattgaataagttaatttatgtaaagtgctgagaatgaagcctggcacatTGAGGAATATTTTGCTTTTTATTTTACTCTTAGGCAGCCTTTGGCACTGAATGTTAGGGCATTGGTTAGCAGACACTGTGGTGGAAACATTGAAAATGAAAATCTTAGAAATTTTCAGTGCTTGCTAATGT-AAAAACACATTGCTGACtataccagtcaagatcctggcaggaaggaggaaac--------------------aggatacactcaacct i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76907277 475 + 107442819 ATGATTGGTATATACAGTGCTGGGCATCCAAGACATG----TTGCCTTTCTTCAAATGATGTGGTGACTTCTGATTTGTTT---------------------------------------GAAAC-AAAAGGA-TGCCAACACTTTTAACTCGTTAAACTCTATGATCATGctctcactt---ctttctttctgggtactttctctgtctctttccattcctcatctgtaaaatgaggttagTAACAGTGCCTATGTCATGGGGCTGCTTTGAGGATTGAATAAGTTAATTTATGTAAAGTGCTGAGAATGAAGCCTGGCACATTGaggaatattttgctttttattttactcttaggCAGCCTTTGGCACTGAATGTTAGGGCATTGGTTAGCAGACACTGTGGTGGAaacattgaaaatgaaaatcttaGAAATTTTCAGTGCTTGCTAATGT-AAAAACACATTGCTGACTATACCAGTCAAGATCCTGGCAGGAAGGAGGAAAC--------------------AGGATACACTCAACCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81170708 475 + 108555830 atgattggtatatacagtgctgggcatccaAGACATG----TTGCCTTTCTTCAAATGATGTGGTGACTTCTGATTTGTTT---------------------------------------GAAAC-AAAAGGA-TGCCAACACTTTTAACTCGTTAAACTCTATGATCATGCTCTCACTT---CTTTCTTTCTGGGTActttctctgtctctttccattcctcatctgtaaaatgaggttagtaacagtgcctatgtcatggggctgctttgaggattgaataagttaatttatgtaaagtgctcagaatgaagcctggcacatTGAGGAATATTTTGCTTTCTATTTTACTCTTAGGCAGCCTTTGGCACTGAATGTTAGGGCATTGGTTAGCAGACACTGTGGTGGAAACATTGAAAATGAAAATCTTAGAAATTTTCAGTGCTTGCTAATGT-AAAAACACATTGCTGACtataccagtcaggatcctggcaggaaggaggaaac--------------------aggatacactcaacct i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111405670 478 - 210400635 atgattggtatataaggtgctGGGCATCCAAGACATGTTAATTGCATTTCTTCAAATGATGTGGTGACTTCTGATTTGTTT---------------------------------------AAAAC-CAAAGGA-TGCCAACACTTCTATCTTGTTAAGCTCTATGATCATGCTCTCACTT---CTTTCTT----GGTActttctctgcctctcttcattcctcatctgtaaaatgaggttagtaacagtgcctatgtcatagggctgctttgcagattgaataagttaatttatgtaaagtgctcagaatagagcctggcacatTGAGGAGTATTTTGCTTTTTATTTTACTCTTAGGCAGCCTTTGGCACTGAATGTCAGGTCATTGGTTAGCAGATGCTGTGGTAGAAACACTAAAAATGAAAATCTTAGAAATTTTCAGTGCTTGCTAATGTAAAAAACACATTGCTAACtataccagtcaagatgctggcaggaaggaggaaac------------------ggggggtacactcaacct i calJac3.chr1 C 0 C 0 s mm10.chr19 38055870 447 - 61431566 AAGGGTGGTTGACAAAGTACTGG-CACTGAAGTAACGTTCAGTTCTTGCCCCCAGATGATACGGTGGCTTCTGGTTTGGTT---------------------------------------ACAACAAAAAGGA-TGCC-ACACTGTCACCCTTCCTAGCTCTGTG-----------------------------------TTCTCCTCTTCTCTTGGttccccttcagtgcaattggattcataacactgtctat---ctggagcgatgctggggat----taagtgagttcatagaagaagcttaggctgctgcctggcacaCTAAGGAGGATTTTGCTTTTTATTCCACTCCATGACAGCCCTTGGCACTACATGTT-GAGCATCAGTTGGCAGATACTGCCGTGGTAATTTGAAAAAAAAAAA----AGAAATTTT-AAAATTTGTCAGTGC-------ACGCTGACAACTGTCCCAGCTAGGATTCTGGTGGGAACGGGGTGGCTCTGTGGGGTGTGGGAGTGGAGGTGGGGATCCGCCT i mm10.chr19 I 282 C 0 s canFam3.chr1 35295423 509 - 122678785 gtgactgg----cacagtgccgggcactttaaaaatgtaaATTTCCTCTCTTCAAATCACTCAATGGCTTCTGgtttgtttgtttgtttgtttttttTTAAAAAAAGGAAAAAAAATTAAAAAGC-AAAAGGAGTGCCAATACTTTCATCTTGTTGAGTAGCCTGATCCCATAATCCCTTCCCCTTTCTTTCTGTGCAc--tctctgcttgt-----ttgctcatctgtaaaatgaggttaataatagtacctacctcatgggactgttttgaggattaaataagttaattcagttaaagtgcttagaatagaacctggcatattaaggactGTTTTGCTTTCTATTTTATTCTTCAGCAGCCCTGGGCATGGAATGTT-GGGTATTGCTTGGCAGACGCTGCAGTGAAAAAGTTGCAGATAAAAATCTTAACATTTTTCAGTGATTGCTAACGT-AAAAACCCATTGATAGCtatatcaatcagggtcctggcaggaaagtggaaac--------------------agggtgcatcccacc- i canFam3.chr1 C 0 C 0 a score=1651616.000000 s hg38.chr9_GL383541v1_alt 87650 635 + 171286 gagtaatttgagggaagctcactgaag------agaccacaaaggtgtgagt-ggtaaaggaagccagcaaggaatagctctgtgacccaggactagtaacagtgatgattcaggagctgttatct-------------------------tcttttggtct----------gaaaggacaagggaggaggagtttccagtacctgtaaacaatagctatttgtcaaacaaggg---ctgcttgacaagactt----------------------gCCAAC-------------------TCATGGCGACCTGGCTGGGAGACTGCTGGGCAAGTAAACCC--CTGATTTCATtctccttccaccctccattggtcgaatccaac-agggagatggaaggcagggtagcccattgatacagtccggataggtcaacctctgcaggacctatcaggtggagaaga---gcaacgtggatccgcaggggGCCA------GTGGCCAGCACAATTATACTTCCTAGTTTAACTGTGTGATTATAAGGGTCAATGGAGGCATTA-GCTTGTGGGTTTCTTGCTCCCTTTTAAGGAACAATTGTTGATGGAGACCAATATATCCATGCAAACATGCCAATGACACTAA------------GGGTAGAAGAGGGGGATCTGAT-TATCTTCTCTCTCTTCTCTACTCAGTAGCTGCAAAAGGGA-CCAGAACCTAGGATATATCTGCCCCACCT s panTro4.chr9 68653069 635 + 137840987 gagtaatttgagggaagctcactgaag------agaccacaaaggtgtgagt-ggtaaaggaagccagcaagggacagctctgtgacccaggactagtaacagtgatgattcatgagctgttatct-------------------------tcttttggtct----------gaaaggacaagggaggaggagtttccagtacctgtaaacaatagctatttgtcaaacaaggg---ctgcttgacaagactt----------------------gCCAAC-------------------TCATGGCGACCTGGCTGGGAGACTGCTGGGCAAGTAAACCC--CTGATTTCATtctccttccaccctccattggtcgaatccaac-agggagatggaaggcagggtagcccattgatacagtccagataggtcaacctctgcaggacctatcaggtggagaaga---gctacgtggatccgcaggggGCCA------GTGGCCAGCACAATTATACTTCCTAGTTTAACTGTGTGATTATAAGGGTCAATGGAGGCATTA-GCTTGTGGGTTTCTTGCTCCCTTTTAAGGAACAATTGTTGATGGAGACCAATATATCCATGCAAACATGCCAATGACACTAA------------GGGTAGAAGAGGGGGATCTGAT-TATCTTCTCTCTCTTCTCTACTCAATAGCTGCAAAAGGGA-CCAGAACCTAGGATATATCTGCCCCACCT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64808437 631 + 135191526 gagtaatttgagggaagctcactgaag------agaccacaaaggtgtgagt-gataaaggaagccagcaagggacagctctgtgacccaggactagtaacagtgatgattcatgagctgttatct-------------------------tcttttggtct----------gaaaggacaagggaggaggagtttccagtacctgtaaacaatagctatttg----gtgaggg---ctgcttgacaagactt----------------------gCCAAC-------------------TCATGGCGACCTGGCTGGGAGACTGCTGGGCAAGTAAACCC--CTGATTTCATtctccttccaccttccactggtcgaatccaac-agggagatggaaggcagggtagcccattgatacagtccagataggtcaacctctgcaggacctatcaggtagagaaga---gcaacgtggatctgcagggggcca------atggccagcacaATTATACTTCCTAGTTTAATTGTATGATTCTAAGGGTCAATGGAGGCATTA-GCTTGTGAGTCTCTTGCTCCCTTTTAAGGAACAATTGTTGATGGAGACCAATATATCCACGCAAACATGCCAATGACACTAA------------GGGGAGAAGAGGGGGATCTGAT-TATCTTCTCTCTCTTCTCTACTCAGTAGCTGCAAAAGGGA-CCAGAACCTAGGATATATCTGCCCCACCT i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79778732 631 + 112192347 gagtaatttgagggaagctcactgaag------agatcacaaa-ctgtgagt-cataaaggaagccagcaagggacagctctgtgacccaggactagtaacagtgataattcatgagctgttgtct-------------------------tcttttggcct----------gaaaggacaagggaggaggagtttccagtacctataaacaatagctatttg----gtgagga---ctgcttgacaagattt----------------------gccaac-------------------ccatggcgacctggctgggagactgctgcgcaattaaaccc--ctgatttcactctccttccaccttccattggtcgaatccaac-agggagatggaaggcaggggagcccattgatacagttcagataggtcaacctctgcaggacctatcaggtggagaaga---gcaaaattgatctgcagggggcca------atggccagcacaATTATACTTCCTAGTTTAATTGCATGATTATAAGGGTCAGTGGAGGCATTA-GCTTGTGAGTTTCTTGCTCCTTTTTAAGGAAAAGTTGTTGATGAAGATCAATATATCCACGCAAACATGCCAACGACACTAA------------GGGGAGAAGAGGAGGGTCTGAT-TATCCTCTCTCTCTTCTCCACTCAGTAGCTGCAAAAGGAACCCAGAACCTAGGATAGATCTGTCCCACCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80858700 631 + 112612857 gagtaatttgagggaagctcactgaag------agatcacaaa-ctgtgagt-cgtaaaggaagccagcaagggacagctctgtgacccaggactagtaacagtgataattcatgagctgttgtct-------------------------tcttttggcct----------gaaaggacaagggaggaggagtttccagtacctataaacaatagctatttg----gtgagga---ctgcttgacaagattt----------------------gccaac-------------------ccatggcgacctggctgggagactgctgcgcaattaaaccc--ctgatttcactctccttccaccttccattggtcgaatccaac-agggagatggaaggcaggggagcccattgatacagttcagataggtcaacctctgcaggacctatcaggtggagaaga---gcaaaattgatctgcagggggcca------atggccagcacaATTATACTTCCTAGTTTAATTGCATGATTATAAGGGTCAGTGGAGGCATTA-GCTTGTGAGTTTCTTGCTCCTTTTTAAGGAAAAGTTGTTGATGAAGATCAATATATCCACGCAAACATGCCAACGACACTAA------------GGGGAGAAGAGGAGGGTCTGAT-TATCCTCTCTCTCTTCTCCACTCAGTAGCTGCAAAAGGAACCCAGAACCTAGGATAGATCTGTCCCACCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76907752 631 + 107442819 GAGTAATTTGAGGGAAGCTCACTGGAG------AGATCACAAA-CTGTGAGT-CGTAAAGGAAGCCAGCAAGGGACAGCTCTGTGACCCAGGACTAGTAACAGTGATAATTCATGAGCTGTTGTCT-------------------------TCTTTTGGCCT----------GAAAGGACAAGGGAGGAGGAGTTTCCAGTACCTGTAAACAATAGCTATTTG----GTGAGGA---CTGCTTGACAAGATTT----------------------GCCAAC-------------------CCATGGCAACCTGGCTGGGAGACTGCTGCGCAATTAAACCC--CTGATTTCACTCTCCTTCCACCTTCCATTGGTCGAATCCAAC-AGGGAGATGGAAGGCAGGGGAGCCCATTAATACAGTTCAGATAGGTCAACCTCTGCAGGACCTATCAGGTGGAGAAGA---GCAAAATTGATCTGCAGGGGGCCA------ATGGCCAGCACAATTATACTTCCTAGTTTAATTGCATGATTATAAGGGTCAGTGGAGGCATTA-GCTTGTGAGTTTCTTGCTCCTTTTTAAGGAAAAGTTGTTGATGAAGATCAATATATCCACGCAAACATGCCAATGACACtaa------------ggggagaagaggagggtcTGAt-tatcctctctctcttctccactcAGTAGCTGCAAAAGGAACCCAGAACCTAGGATAGATCTGTCCCACCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81171183 631 + 108555830 gagtaatttgagggaagctcactgaag------aggtcacaaa-ctgtgagt-cgtaaaggaagccagcaagggacagctctgtgacccaggactagtaacagtgataattcatgagctgttgtct-------------------------tcttttggcct----------gaaaggacaagggaggaggagtttccagtacctgtaaacaatagctatttg----gtgagga---ctgcttgacaagattt----------------------gccaac-------------------ccatggcgacctggctgggagactgctgtgcaattaaaccc--ctgatttcactctccttccaccttccattggtcgaatccaac-agggagatggaaggcaggggagcccattgatacagttcagataggtcaacctctgcaggacctatcaggtggagaaga---gcaaaattgatctgcagggggcca------atggccagcacaATTATACTTCCTAGTTTAATTGCATGATTATAAGGGTCAGTGGAGGCATTA-GCCTGTGAGTTTCTTGCTCCCTTTTAAGGAAAAGTTGTTGATGAAGATCAATATATCCACGCAAACATGCCAACGACACTAA------------GGAGAGAAGAGGAGGGTCTGAT-TATCCTCTCTCTCTTCTCCACTCAGTAGCTGCAAAAGGAACCCAGAACCTAGGATAGATCTGTCCCACCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111406148 630 - 210400635 gagtaatttgaggaaagctcataaaag------agaccacaaaggtgtgagt-gataaaggaagccagcaagggatagctctgtgactcaggactagttacagtgatgattcacgagctgttttcc-------------------------tcttttgatct----------gaaaggacaagggaagaggagttcctagaacctgtaaacaatagctatttg----gtgaggagggctgcttgacaagattc----------------------ggcaac-------------------cgatggcaacctggccaggagactgctgggcaagtaaaccc--ctgatttcactctccttccaccttccgttggtcgaatccaac-agggagatggaaggcaggggagcccattgatccagtctaactaggtcaacgtctgtaggacctatcagatggagaagg---gcacggtggatcagcagggggcca------atggccagcacaATTATACTTTCTAGTGTAATTTCATAATTATAAGGGTCAATGGAGTCACTG-GCTTGTGAGTCTCTTGCTCCTTTTTAAGTAACAATTGTTGATGGGGATGAATATATTCATACAACCATGCCAATGACACTAA------------GGGCAGAAGGGGAGGTCC------GTCTTCTCTCTCTTCTCCACTCAGCAGTTACAAAAGAGACCCAGAACCTAGGATATATCTGCCTTACCT i calJac3.chr1 C 0 C 0 s mm10.chr19 38056317 588 - 61431566 CTGTAATTTGAAGAAAGCCCATTGACATCAACCAGACCACAAAGCCTTGCAA-AGTAAA-AATGCCAACAGGTGCTGGCACAGTGAC-CAGAATTAGAGCCAGCTATGACTCATAACCTGCCATCTGGCTAGCCAAGGATGGTCAAGGCCATATTTGACCCTTCGCTTCCTAGCCAGGACA--GGAAGAGGAATTACTAGCAAGTGGAAAGGGTGGTTGTATG----GTCAAGA---CTTCTGGTTAGGCTGT----------------------TCCTTCTATAAAGGGCCATAGCTCACCATGGTAGTCTGGCAGTGATGGAGATGGG---TTCTAAGC--CTGATATCAACCTCTTTC--CCCTCCCTTGGTGGAACCCAACAAGGGGGATGGA--GCAG----------------------------------------------------TAGAGAAGA---ATAGGACGGG-------------------------------AATCATCCTTTGTTTGATAATTGCAGGATTAT-GGGGTCAGCGGCTGAGTTATGTTTATAAATTCCCTGCT--------AAAAGAGTTTGTTGATGAGAAGCAATGTACAGAAGCAA-CACGACACCATTCCCAA------------GCACAGA-------GATTTTAC-TTCAGTCTTCCTCATCTCTAGGCAGGAGTTGCAGAAAGGC-CCTGGTCCCAGTGTGCTCCTCTCCCACAT i mm10.chr19 C 0 C 0 s canFam3.chr1 35295932 647 - 122678785 ---taatttgaagaagactcatt--ag------gggctacagaggtgagggtaggtaaaggaaaccagcaaaagcttatgtggcaattcagaactggtaagaatggtgattcgtcaga---------------------------------ctttagggcaa----------ggcgggggggggggaggggtgctactggagcctggagccagtggctgtgtg----gtgaggg---ctacttgataggacctgtgtccttggaagagggacacagccaac-------------------ccatggcagcctgacagggagggaactagagaaatgaacaccaccagcctcattcttctcttactttccattggtcaaatccaac-aggaaggcaaaaggcaggggagaccattggtacagtccatataagtctacctctggagggcagagcagggtgagaaaaggtggaggtggggtctgaagggggtaatgggagatGACGAGGGCAATCATACTTCATATTTTTAGTTGATGAGTATGGGGGTCC---------TTC-GTTTGTGAGCTTCTTATTCCCACTAAACAA---------GCCTGAGAAAAATTTATCTTTGCAAACATGTCAGTGCAACTAAAAGTGTGTGTATGGGCGGGGGAGGTAGGTGAAGTGTCTCTATTTTCTCTTCTCCACTCAGTCGCTGCAGAAGAAC-CCAGAGCGTAGGATATGCCTGCCCTGCCT i canFam3.chr1 C 0 C 0 e nomLeu3.chr1a 57845490 142 - 122973662 I a score=4873900.000000 s hg38.chr9_GL383541v1_alt 88285 1332 + 171286 ATTTTACCTGGGTTCTGATTTATAAGAAAAAC------AGGGAATTTTAGCATCTCAGACACATGTCCCTCAGCTCTGGGCAACTTGTTCATCATGAGAAGAGAAAGGAATGGAGGACTGGGCCAGTAGATTCAAGAAAGGGTTGTGGAAAAAATTTTCTAGAGCTACGAGCATAACCCT-GAACAGCTCTTTGAGACAGAGGT----GACTGATAAAAATagctgacttgtaccaagcac--tgaccacatgcctggcact-------atgctgggagctctccacactt---acaatagctctgtgaagtggg-------aacattgtc--cccatttcacatatggagacacagag-gctacaaaaagtggtaagtcatgctccaagtgacatggctaataagtggaagggccataatccaaaGGGCCAATGATGAATTAGAATCTTGATTCATTACAGGATC-------TGTCTCTCTTCTTGGCCAAAATTGTGCAGGGGTCCTGGTAGAAAGGTTGCAGTGGGCAAAGGAAGAGAGAAAC--TTCTGAATATCTAAGAGCAAACTCTGTAGT-AGGAT-GCGTGT---------ACCCAGGTGTG--ACTGTGTCTCCATGAA--GTGTT--TTTGTTTCCCTTCC-CCAGAATGTGACTTTGAAGAAAATCATCTCTGTGGCTTTGTGAACCGCTGGAATCCCAATGTGAACTGGTTTGTTGGAGGAGGAAGTATTCGGAATGTCCACTCCATTCTCCCACAGGATCACACCTTCAAGAGTGAACTGGGTGAGCTGGGATCAAATAGAGTCCTTTTCCCAGGATAAATTTTTCTGCTGTCTCCTCCCACTTCCTGCACTGACCTAGCTGTGGCTTCTGTCAACAGGGAAGAGAGGAGGGAGGAGGGTGAGTAGGAACTAAGTAGGAACCAGGAGGTGTGACAGAAGAGTAGGGAAGGATCTACAGTGAGGTAGAGACAAACTGCAGCTGTGAGCTC---TGTAGCTAAGGGGAAGGCCATTCCATTAAAAGTTCTCC--TTCACCTGTGGCCTAGTCTTGCATTTT-CATATTTCCATATTATGCTTTACTTTCTTGTATATTTGTTGTTTAATATTTCTCATTTCTAAAGACAAGGCTGGAAAAATCCTAGGTTACTTTTCACTGAAGATAGATCAAAGGATGGGAATGGGTCC-TAAGAACTTCCCAAGTGACAGTGAGGTGAGCC---AATACTGATGATTAG---CTCTGAATGTGGTGTGCAACAGGCCCCCCTAGTGGCCAAGAAGGCTGCTTCTCTGCAAGGAAAAT-GGGAGGTGAGGTTGTGTTACCAGCGAGA------------------------------AGTCAGCTTTGAGGAGAAGTCCTCCACAGAAGAGAGACAAGGGCAAGGGCTTACTT s panTro4.chr9 68653704 1332 + 137840987 ATTTTACCTGGGTTCTGATTTATAAGAAAAAC------AGGGAATTTTAGCATCTCAGACACATGTCCCTCAGCTCTGGGCAACTTGTTCATCATGAGAAGAGAAAGGAATGGAGGACTGGGCCACTAGATTCAAGAAAGGGTTGTGGAAAAAATTTTCTAGAGCTACGAGCATAACCCT-GAACAGTGCTTTGAGACAGAGGT----GACTGATAAAAATagctgacttgtaccaagcac--tgaccacatgcctggcact-------gtgctgggagctctccacactt---acaatagctctgtgaagtggg-------aacattgtc--cccatttcacatatggagacacagag-gctacaaaaagtggtaagtcatgctccaagtgacatggctaataagtggaagggccataatccaaaGGGCCAATGATGAATTAGAATCTTGATTCATTACAGGATC-------TGTCTCTCTTCTTGGCCAAAATTGTGCGGGGGTCCTGGTAGAAAGGTTGCAGTGGGCAAAGGAAGAGAGAAAC--TTCTGAATATCTAAGAGCAAACTCTGTAGT-AGGAT-GCATGT---------ACCCAGGTGTG--ACTATGTCTCCATGAA--GTGTT--TTTGTTTCCCTTCC-CCAGAATGTGACTTTGAAGAAAATCATCTCTGTGGCTTTGTGAACCGCTGGAATCCCAATGTGAACTGGTTTGTTGGAGGAGGAAGTATTCGGAATGTCCACTCCATTCTCCCACAGGATCACACCTTCAAGAGTGAACTGGGTGAGCTGGGGTCAAATAGAGTCCTTTTCCCAGGATAAATTTTTCTGCTGACTCCTCCCACTTCCTGCACTGACCTAGCTGTGGCTTCTGTCAACAGGGAAGAGAGGAGGGAGGAGGGTGAGTAGGAACTAAGTAGGAACCAGGAGGTGTGACAGAAGAGTAGGGAAGGATCTACAGTGAGGTAGAGACAAACTGCAGCTGTGAGCTC---TGTAGCTAAGGGGAAGGCCATCCCATTAAAAGTTCTCC--TTCACCTGTGGCCTAGTCTTGCATTTT-CATATTTCCATATTATGCTTTACTTTCTTGTATATTTGTTGTTTAATATTTCTCATTTCTAAAGACAAGGCTGGAAAAATCCTAGGTTACTTTTCACTGAAGATAGATCAAAGGATGGGAATGGGTCC-TAAGAACTTCCCAAGTGACAGTGAGGTGAGCC---AATACTGATGATTAG---CTCTGAATGTGGTGTGCAACAGGCCCCCCTAGTGGCCAAGAAGGCTGCTTCTCTGCAAGGAAAAT-GGGAGGTGAGGTTGTGTTACCAGCGAGA------------------------------AGTCAGCTTTGAGGAGAAGTCCTCCACAGAAGAGAGACAAGGGCAAGGGCTTACTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64809068 1368 + 135191526 ATTTTACCTGGGTTCTGATTTATAAGACAAAC------AGGGAATTTTAGCATCTCAGACACACGCCCCTCAGCTCTGGGCAACTTGTTCATCATGAGAAGAGAAAGGAATGGAGGACTGGGCCACTAGATTCAAGAAAGGATTGTGGAAAAAATTTTCTAGAGCTAAGAGCATAACCCT-GAAAAGTGCTTTGAGACAGAGGT----GACTGATAAAAATagctgacttgtaccaagcac--tgaccacatgcctggcact-------gtgctgggagctctccacactt---acaatagctctgtgaagtggg-------aacattgtc--cccatttcacatatggagacacagag-gctacaaaaagtggtaagtcatgcttcaagtgacatggctaacaagtggaagggccataatccaaaGGGCCAATGATGAATTAGAATCTTGATTCATTACAGGATCGACATTTGGCCTCTCTTCTTGGCCAAAATTGTGCGGGGGTCTTGGTAGAAAGGTTGCAGTGGGCAAAGGAAGAGAGAAAC--TTCTGAATATCTAAGAGCAAACTCTGTAGT-AGGAT-GGGTGT---------ACCCAGGTGTG--ACTGTGTCTCCATGAA--GTGTT--TTTGTTTCCCTTCC-CCAGAATGTGACTTTGAAGAAAATCATCTCTGTGGCTTTGTGAACCGCTGGAATCCCAACGTGAACTGGTTTGTTGGAGGAGGAAGTATTCGGAATGTCCACTCCATTCTCCCAAAGGATCACACTTTCAAGAGTGAACTGGGTGAGCTGGGGTCAAATGGAGTCCTTTTCCCAGGATAAATTTTTCTGCTGTCTCCTCCCACTTCCTGCACTGACCTACCTGTGGCTTCTGTCAACAGGGAAGAGAGGAGGGAGGAGGGTAAGTAGGAACTAAGTAGGAACCAGGAGGTGTGGCAGAAGAGTAGGAAAGGATCTACAGTGAGGTAGAGACAAACTGCAGCTGTGAGCTC---TGTAGCTAA-GGGAAGGCCATCCCATTAAAGGTTCTCC--TTCACCTGTGGCCTAGTCTTGCATTTT-CGTATTTCCATATTATACTTTACTTTCTTGTGTATTTGTTGTTTAATATTTCTCATTTCTAAAGAGAAGGCTGGAAAAATCCTAGGTTACTTTTCACTGAAAATAGATCAAAGGATGGGAATGGGTCC-TAAGAACTTCCCAAGTGACAGTGAGGTGAGCC---AATACTGATGATTAG---CTCTGAATGTGGTGTGCAACAGGCCCCCCTAGTGGCCAAGAAGGCTACTTCTCTGCAAGGAAAAT-GGGAGGTGAGGTTGTGTTACCAGTGAGGTTGTGTTACCAGTGAGGTGACTGTGTTACCAGTCAGCTTTGAGGAGAAGTCCTCCACAGAAGAGAGACAAGGGCAAGGGCTTACTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57845632 1334 - 122973662 ACTTGAGCTGGGTTCTGATTTATAAGAAAAAC------AGGGAATTTTAGCATCTCGGACACATGCCCCTCAGCTCTGGGCAACTTGTTCATCATGAGAAGAGAAAGGAATGGAGGGCCGGGCCACTAGATTCAAGAAAGTGTTGTGGAAAAAATTTTCTAGAGCTAAGAACATAACCCT-GAACAGTGCTTTGAGACAGAGGT----GACTGATAAAAATagctgacttgtaccaagcac--tgactacatgcctggcact-------gtgctgggagctctccgcactt---acaatagctctgtgaagtggg-------gacattgtc--cccatttcacatatggagacccagag-gctacaaaaagtggtaagtcatgctccaagtgacacggctaataagtggaagggccacaatccaaaGGGCCAATGATGAATTAGAATATTGATTCACTACAGGATC-------TGTCTCTCTTCTTGGCCAATATTGTGCAGGGGTCCTGGTAGAAAGGTCGCAGTGGGCAAAGGAAGACAGAAAC--TTCTGAATATCTAAGAGCAAACTCTGTAGT-AGGAT-GGGTGT---------ACCCAGGTGTGACACTGTGTCTCCATGAA--GTGTT--TTTCTTTCCCTTCC-CCAGAATGTGACTTTGAAGAAAATCATCTCTGTGGCTTTGTGAACCGCTGGAATCCCAATGTGAACTGGTTTGTTGGAGGAGGAAGTATTCGGAATGTCCACTCCATTCTCCCACAGGATCACACCTTCAAGAGTGAACTGGGTGAGCTGGGGTCAAATAGAGTCCTTTTCCCAGGATAAATTTTTCTGCGGTCTCCTCCCACTTCCTGCACTGACCTAGCTGTGGCTTCTGTCAGCAGGGAAGAGAGGAGGGAGGAGGGTGAATAGGAACTAAGTAGGAACCAGGAGGTGCAGCAGAAGAGTGGGGAAGGATCTACAGTGAGGTAGAGACAAACTGCAGCTGTGAGCTC---TGTAGCTAAGGGGAAGGCCACCCCCTTAAAGATTCTCC--TTCACCTGTGGCCTAGTCTTGCATTTT-CACATTTCCATATTATGCTTTACTTTCTTGTGTATTTGTTGTTCAATATTTCTCATTTCTAAAGACAAGGCTGGAAAAATCCTAGGTTACTTTTCACTGAAAATAGATCAAAGGATGGGAATGGGTCC-CAAGAACTTCCCAAGTGACAGTGAGGTGAGCC---AATACTGATGATTAG---CTCTGAATGTGGTGTGCAACAGGCCCCCCTAGTGGCCAAGAAGGCTGCTTCTCTGCAAGGAAAAT-GGGAGGTGAGGTTGTGTTACCAGCGAGA------------------------------AGTCAGCTTTGGGGAGAAGTCCTCCACAGAAGAGAGACAAGGGCAAGGGCTTACTT i nomLeu3.chr1a I 142 C 0 s rheMac3.chr15 79779363 1329 + 112192347 ATTTTGCCTGGGTTCTCATTTATAAGAAAAAT--------GGAATTTTAGCATCTCGGACACATGCCCCTCAGCTCTGGGCAACTTGTTCATCATGAGAAGAGAAAGGAAAGGAGGACTGGGCTACCAGATTCAAGAAAGGGTTGTGGAAAAAATTTTCTAGAGCTCAGAGCATAACGCT-GAGCAGTGCTTTGAGACAGAGGT----GACTGATAAAAACagctgacttgtaccaagcac--tgaccacatgcctggcact-------gcgctgggagctctccacactt---acaatagctctgtgaagtagg-------aacattgtc--cccatttcacatatggagacacagag-gctacaaaaagtgataagtcatgctccaagtgacatggctaataagtggaagggccataatccaaaGGGCCAATGATGAATTAGAATCTTGATTTATTACAGGATC-------TGTCTCTCTTCTTGACCAATATTGTGCGGGGGTCCTGGTAGAAAGGTCACAGTGGGCAAAGGAAGAGAGAAAC--TTCTGAATATCTAAGAGCAAACTCTGTAGT-AGGAT-GGGTGT---------ACCCAGGTGTG--ACTGTGTGTCCATGCA--GTGTT--TTTGTTTCCCTTCC-CCAGAATGTGACTTTGAAGAAAATCATCTCTGTGGCTTTGTGAACCGCTGGAATCCCAACGTGAACTGGTTTGTTGGAGGAGGAAGTATTCGGAATGTCCATTCCATTCTCCCACAGGATCACACCTTCAAGAGTGAACTGGGTGAGCTGCGGTCAAATGGAGTCCATTTCCCAGGATAAATTTTTCTGCTGTCTCCTCCCACTTCCTGCACTGACCTAGCTGTGGCTTCTGTCAATAGGGAAGAGAGGAGGGAGGAGGGTGAGTAGGAACTAAGTAGGAACCAGGAGGTGTGGCAGAAGAGTAGGGAAGGATCTACAGGGAGGTAGAGACAAGCTGCACCTGTGAGCTC---TGTAGCTACGGGGAAGGCCACCCCG-TAAAGATTTTCC--TTCACCTGTGGCCTAGTCTTGTATTTT-CACATTTCCATATTATGCTTTACTTTCTTGTGTATTTGTTGTTTAATATTTCTCATTTCTAAAGACAAGGCTGGAATAATCCTAGGTTACTTTTCACTGAAAATAGATCAAAGGATGGGAATGGGTCC-TAGGAACTTCCCAAGTGACAGTGAGGTGAGCC---AATACTGCTGATTAG---CTCTGAATGTGGTGTGCAACAGGCCCCCCTAGTGGCGAAGAAGGCTGCTTCTCTGCAAGGAAAAT-GAGAGGTGAGGTTGTGTTATCAGCAAGA------------------------------AGTCAGCTTTGAGAAGAAGTCCTCCACAGAAGAGAGACAAGGGCAAGGGCTTACTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80859331 1325 + 112612857 ATTTTGCCTGGGTTCTCATTTATAAGAAAAAT--------GGAATTTTAGCATCTCGGACACATGCCCCTCAGCTCTGGGCAACTTGTTCATCATGAGAAGAGAAAGGAAAGGAGGACTGGGCTACCAGATTCAAGAAAGGGTTGTGGAAAAAATTTTCTAGAGCTCAGAGCATAACGCT-GAGCAGTGCTTTGAGACAGAGGT----GACTGATAAAAACagctgacttgtaccaagcac--tgaccacaagcctggcact-------gcgctgggagctctccacactt---acaatagctctgtgaagtagg-------aacattgtc--cccatttcacatatggagacacagag-gctacaaaaagtgataagtcatgctccaagtcacatggctaataagtggaagggccataatccaaaGGGCCAATGATGAATTAGAATCTTGATTTATTACAGGATC-------TGTCTCTCTTCTTGACCAATATTGTGCGGGGGTCCTGGTAGAAAGGTCACAGTGGGCAAAGGAAGAGAGAAAC--TTCTGAATATCTAAGAGCAAACTCTGTAGT-AGGAT-GGGTGT---------ACCCAGGTGTG--ACTGTGTGTCCATGCA--GTGTT--TTTGTTTCCCTTCC-CCAGAATGTGACTTTGAAGAAAATCATCTCTGTGGCTTTGTGAACCGCTGGAATCCCAACGTGAACTGGTTTGTTGGAGGAGGAAGTATTCGGAATGTCCATTCCATTCTCCCACAGGATCACACCTTCAAGAGTGAACTGGGTGAGCTGCGGTCAAATGGAGTCCATTTCCCAGGATAAATTTTTCTGCTGTCTCCTCCCACTTCCTGCACTGACCTAGCTGTGGCTTCTGTCAATAGGGAagagaggagggaggagggtgagtaggaactaagtaggaaccaggaggtgtggcagaagagtagggaaggaTCTACAGGGAGGTAGAGACAAGCTGCACCTGTGAGCTC---TGTAGCTACGGGGAAGGCCACCCCG-TAAAGATTTTCC--TTCACCTGTGGCCTAGTCTTGTATTTT-CACATTTCCATATTATGCTTTACTTTCTTGTGTATTTGTTGTTTAATATTTCTCATTTCTAAAGACAAGGCTGGAATAATCCTAGGTTACTTTTCACTGAAAATAGATCAAAGGATGGGAATGGGTCC-TAGGAACTTCCCAAGTGACAGTGAGGTGAGCC---AATACTGCTGATTAG---CTCTGAATGTGGTGTGCAACAGGCCCCCCTAGTGGCGAAGAAGGCTGCTTCTCTGCAAGGAAAAT-GAGAGGTGAGGTTGTGTTATCAGCAAGA------------------------------AGTCAGCTTTGAGAAGAAGTCCTCCACAGAAGAGAGACAAGGGCAAGGG----CTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76908383 1324 + 107442819 ATTTTGCCTGGGTtctcatttataagaaaaat--------ggaattttagcATCTCGGACACATGCCCCTCAGCTCTGGGCAACTTGTTCATCatgagaaga-----gaaaggaggactGGGCTACCAGATTCAAGAAAGGGTTGTGGAAAAAACTTTCTAGAGCTAAGAGCATAACCCT-GAACCGTGCTTTGAGACAGAGGT----GACTGATAAAAACAGCTGACTTGTACCAAGCAC--TGACCACATGCCTGGCACT-------GCGCTGGGAGCTCTCCACACTT---ACAATAGCTCTGTGAAGTAGG-------AACATTGTC--CCCATTTCACATATGGAGACACAGAG-GCTACAAAAAGTGATAAGTCATGCTCCAAGTGACATGGCTAATAAGTGGAAGGGCCATAATCCAAAGGACCAATGATGAATTAGAATCTTGATTTATTACAGGATC-------TGTCTCTCTTCTTGACCAATATTGTGCGGGGGTCCTGGTAGAAAGGTCACAGTGggcaaaggaagagagaaac--tTCTGAATATCTAAGAGCAAACTCTGTAGG-AGGAT-GGGTGT---------ACCCAGGTGTG--ACTGTGTGTCCATGCA--GTGTT--TTTGTTTCCCTTCC-CCAGAATGTGACTTTGAAGAAAATCATCTCTGTGGCTTTGTGAACCGCTGGAATCCCAACGTGAACTGGTTTGTTGGAGGAGGAAGTATTCGGAATGTCCATTCCATTCTCCCACAGGATCACACCTTCAAGAGTGAACTGGGTGAGCTGCGGTCAAATAGAGTCCATTTCCCAGGATAAATTTTTCTGCTGTCTCCTCCCACTTCCTGCACTGACCTAGCTGTGGCTTCTGTCAatagggaagagaggagggaggagggtgagtaGGAACTAAGTAGGAACCAGGAGGTGTGGCGGAAGAGTAGGGAAGGATCTACAGGGAGGTAGAGACAAACTGCACCTGTGAGCTC---TGTAGCTACGGGGAAGGCCACCCCA-TAAAGATTTTCC--TTCACCTGTGGCCTAGTCTTGTATTTT-CACATTTCCATATTATGCTTTACTTTCTTGTGTATTTGTTGtttaatatttctcatttctaaagACAAGGCTGGAATAATCCTAGGTTACTTTTCACTGAAAATAGATCAAAGGATGGGAATGGGTCC-TAGGAACTTCCCAAGTGACAGTGAGCTGAGCC---AATACTGCTGATTAG---CTCTGAATGTGGTGTGCAACAGGCCCCCCTAGTGGCGAAGAAGGCTGCTTCTCTGCAAGGAAAAT-GAGAGGTGAGGTTGTGTTATCAGCAAGA------------------------------AGTCAGCTTTGAGAAGAAGTCCTCCACAGAAGAGAGACAAGGGCAAGGGCTTACTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81171814 1305 + 108555830 ATTTTGCCTGGATTCTCATTTATAAGAAAAAC--------GGAATTTTAGCATCTCGGACACATGCCCCTCAGCTCTGGGCAACTTGTTCATCATGAGAAGAGAAAGGAAAGGAGGACTGGGCTACCAGATTCAAGAAAGGGTTGTGGAAAAAATTTTCTAGAGCTAAGAGCATAACCCT-GAACAGTGCTTTGAGACAGAGGT----GACTGATAAAAACagctgacttgtaccaagcac--tgaccacatgcctggcact-------gcgctgggagctctccacactt---acaatagctctgtgaagtagg-------aacattgtc--cccatttaacatatggagacacagag-gctacaaaaagtgataagtcattctccaagcgacatggctaataagtggaagggccataatccaaaGGGCCAATGATGAATTAGAATCTTGATTTATTACAGGATC-------TGTCTCTCTTCTTGACCAATATTGTGCGGGGGTCCTGGTAGAAAGGTCACAGTGGGCAAAGGAAGAGAGAAAC--TTCTGAATATCTAAGAGCAAACTC-----------------------------------TGTG--ACTGTGTGTCCATGCA--GTGTT--ATTGTTTCCCTTCC-CCAGAATGTGACTTTGAAGAAAATCATCTCTGTGGCTTTGTGAACCGCTGGAATCCCAACGTGAACTGGTTTGTTGGAGGAGGAAGTATTCGGAATGTCCATTCCATTCTCCCACAAGATCACACCTTCAAGAGTGAACTGGGTGAGCTGCGGTCAAATGGAGTCCTTTTCCCAGGATAAATTTTTCTGCTGTCTCCTCCCACTTCCTGCACTGACTTAGCTGTGGCTTCTGTCAATAGGGAagagaggagggaggagggtgagtaggaactaagtaggaaccaggaggtgtggcagaagagtagggaaggaTCTACAGGGAGGTAGAGACAAACTGCACCTGTGAGCTC---TGTAGCTACGGGGAAGGCCACCCCA-TAAAGATTTTCC--TTCACCTGTGTCCTAGTCTTCTATTTT-CACATTTCCATATTATGCTTTACTTTCTTGTGTATTTGTTGTTTAATATTTCTCATTTCTAAAGACAAGGCTGGAATAATCCTAGGTTACTTTTCACTGAAAATAGATCAAAGGATGGGAATGGGTCC-TAGGAACTTCCCAAGTGACAGTGAGGTGAGCC---AATACTGCTGATTAG---CTCTGAATGTGGTGTGCAACAGGCCCCCCTAGTGGCGAAGAAGGCTGCTTCTCTGCAAGGAAAAT-GCGAGGTGAGGTTGTGTTATCAGCAAGA------------------------------AGTCAGCTTTGAGAAGAAGTCCTCCACAGAAGAGAGACAAGGGCAACGGCTTACTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111406778 1321 - 210400635 ATTTTGCCTGCATTCTAATTTATAAGAAAAAC------AGGGAATTTTAGCATCTAAGACACATGCCCCTCGGCTAC-GGCATCTTGTTCACCATGAAAAGAGAAAAGAATGGAAGACTGGGCCATCAGATTCAAGAAAGGGTTATGGAAAAAAATTTCTAGAGCTAAGAGCATAACCCT-GAACAGTGCTTTGAGACAGAGAT----GACTGATaaaaatagctgatttgtatcaagcag--tgaccacatgcctggcacc-------gtgctgggagctgtccacgctt---acaatagctctatgaagtgag-------aatgttgtt--cttatttcacatatggagaaacagag-ggtacaaaaagtgataagtcatgctccaagtcacacagctaatacgtggaagggccacaatctaaaGGGCCAATGATGAATGAGAATCTTGATTCATCACAGAATC-------TGTCTCTCTTCTTGGCCAATATTGTTCAGGAGTCCTGGTAGAAAGGTCGCAGTGAGCAAAGAAAAAAAGAAAC--TTCTGACTATCTAAGAGCAAACTCTGTAGT-AGGAT-GGGTGT---------ACCCAGGTGTC----------TCCATGAA--GTGTT--TTTGTTTCCCTTTC-CCAGAATGTGACTTTGAAGAAAATCATCTCTGTGGCTTTGTGAACCGCTGGAATCCCAACGTGAACTGGTTTGTTGGAGGAGGAAGTATTCGGAATGTCCACTCCATTCTCCCACAGGATCACACTTTCAAGAGTGAACTGGGTGAGCTGGGGTCAAATGGAGTCCTTTTCCCAAGATAAATGCTTCTGCTGTCTCCTCCCACTTCCTCTACTGACCTAGCTGTGGCTTCTGTCAACAGGGAAGAGAGGAGGGAGGAGGGTGAGTAGGAACCCAGTATGATCCAGGAGGCATGGCAGAAGAGTAGGGAAGGATCTACAGTGAGGTAAAGATGAAATGTAGCTGTGAGCTC---TATAGCTAAGGGGAAGGCCACCCCATTAAATGTTTTCC--TTCACCTGTGGCCTAGTCTTGCATTTT-CACATTTCTATATTATGCTTTACTTTCTTGTGTATTTGTTGTTTAATATTTCTCATTTCTAAAGACAAGGCTGGAATAATCCCAGGTTACTTTTCACTAGAAATAGATCAAAGGATGGGAACAGGTCC-TAAGAACCTCCCAGGTGACAGTGAGGTGAGCC---AACATTGATGATTAG---TTCTGAATGTGGTGTGCAACAGGGCCCCCTAGTGGCCAAGGAGGCTGCTTCTCTGCAAGGAAAATGGGGAGGAGAGGTTGTGCTGTCAGTGAGA------------------------------AGCCAGTTTTGAGG---AGTCCGCCACAGAAGAGAGACAAGGGCAAGGGCTTACTT i calJac3.chr1 C 0 C 0 s mm10.chr19 38056905 1237 - 61431566 ACTCTCACTCGACTCTTACTCATCAGACAAGTGGGGGGGGGGGGTTTCAGCATCTTGGAAACGTGCCTCTGAGTTCTGGAAGTCTTGTTCGCCACAGAGAGA--------TGGAGGGCTGGGCCATCAGGGAACAGAAAGGGTGGTGGAGAAAA-TGTCTAGAGCTGAG-GAATAACTCTAAAATAGTACAGTAAAATAGACACATTAGAGCTGTGAACACAGGTCACTGGTAAAGTGCATGATGAACACATACAAGACCTTGGATGTAGCCCCGGGA----CCAAAACTTTGACCAATTGATTAATTTAGTAGGCTGACAAAAACTCATCAGCTAATATCAAGCATGGACATACTGAGAGCTGTACATGGCTAATAGGAGAACAACAAGCCACATGGCTAATAGGAGAAAGGGC------TCAGAGAGGCAATGATGAATCAGAACATCGACTCATTACTGGATC-----------TCTCTCCTTGCCCGATATTGTTCTGAATTTCTGGTCGATGGTT-------------GAGAAAAAGAGCC--CTTAGAATGACTAAGGTCAGAGTATGCAGTCAGTAT-GGGTGTCCCCCCCCCCCCCCGGTGTA--ACTGCAGCTCCATGAA--ATGTCTGTTTACGTCTCTTCCTCCAGAATGTGACTTTGAAGAAAACCATCTCTGTGGCTTTGTGAACCGCTGGAATCCCAATGTGAACTGGTTCGTGGGAGGAGGAACTGCGAAGAACACCCACTCCATCCTCCCACAGGATCACACCTTCAGGAGTGAGCACGGTGAGCCGACCACAAATGCAGTCTTCTTTCCAGGGTGAACGT---TGCCTTCAACTCCCACTGCC----------------TGGCTTTGGTCGACAGAATAAGGGGTGGGGA--------------CACAATGGAAGACCAGGTGGAAGAGGCAGGAGAG--AGGGACAATCTA---TGAGACAGA---AAACTGCAGACATAAGCTTGTATGTAGCTAAGG---AAGCCACA----GAGTGAGTCTTCGGCTCATCTATAACCTTGGCT---GTTTT-TACATTCCCATGAAATGTTTTAC-TTCTTATCTATTTG-------GCTGTTCTCATTTCTAAAGACAAGGCTG-----------------TCTTTATTAAAAATAGATCGCAGGGT--GACCAGCCCT-TAAGAATTTCCCATGAGAC---------CACC---AATGCTAATGATTATTCCTTCTGAA----GGGTGCAATAGGGCCCCCTGGTGGCCAAGTACGCAAGCACTCTGCAAGGAAAAT-GCAGAG---------GCTCTCACAGCGA------------------------------GGGCAG------GAGAAAGTCC------GAAGGTAGACCAGAGCAAGGGTGTCCTT i mm10.chr19 C 0 C 0 s canFam3.chr1 35296579 1228 - 122678785 -TTCTGACTGT-TTGTTGTTGATAAGAAAAGC------AGGGGCTTTTAACACCTAAGAAACATGTCCTTTTGCCCTGGGTATCTTGTCTACCATCAGGAGAGAAGGGGATGGGGAAGTATGCTACCAG--------AAGGGTGGCAGATACAA-TTTCTGGAGCTAAGCAGATAGTCCC-AAATAGGGCTTTAAAGCAGAGGG----GGCTGATA---------------CACCAAGCAC--TAACCACATGCCCAGCACT-------GTGTTGGGAG-TGGCCACActt---agaaccatcctgtgtggtggg-------agtgttccc--ctcatttcacaaatgaaggaacagaa-gct-------gagagaggtcatgctacaagccacgtggctggtaagtggaagggccgtaatacaaaGAAGCAAAAATGACTTAAAATTT---------------------------------------CCATTATTGTCCAGGGATCATGGTACAAAGCTTCCAGTGATCAAAGGGAATGAGAAACATATCTGAATTTGGAAGAGCAAACTCCGTAGT-GGGTCAGGGTAT---------ACCGAGGGGTG--ACCATGTCTCCACAAAATGTGTT--TCTTTTTCTCTTCTGCCAGAATGCGACTTTGAAGAAAATCATCTCTGTGGCTTTGTGAACCGCTGGAACCCCAATGTGAACTGGTTTGTCGGAGGAGGAAACATTCGGAACTCCCCTTCCGTTCTCCCACAGGATCACACTTTCAAGAGTGAACTGGGTGAGCTGGCGACAGATGGTGTCCTTTTCCCAGGAGAAGTGTTTTCG--------------TCCCTACATTGACCTAACCGTGGC-CCTGTCCACAGAAAAAGGAGAAGGGAGGAGAG--------------------GCCAGGAGTCGTGGTGGAAGAGCAGGAAAGG-TGGGCTGTGAGATTGAGACAACCCGTGGACGGGAGCTC---TGTAACTAAGGGGAAGGCCTCCCGGTTAAAGGCTTTTC--TTCACCTGTGACCTGGCCTTGCTCTTTACACATTTCCCTATTATAGTTTACTTTCTTCTCTACTTGTTGTTCTATGTTTCTTATCCCTAAAGGCAAGTCTGGAATAATCCTAGATTGTTTTTCACTAAAAATAGATTGAGTGATGGGAACAAGTCCTTATGAACTTCCCAAGTGGCCCTGAGGTGAGTCTCAATTCCCAGTGATGAA---TCCTGAA-------AGCAACAGGGCCACCTAGTGGCCAAGTGGGCTGG-ACTGTGCAGGAAAATG-GAGAGGAGAG-----GTTCTTGGGGATA------------------------------AGTTGTCTTTGAGGAGACCATCTCCATAGATGGGAGACGTGTGCAAGGGCTTACTG i canFam3.chr1 C 0 C 0 a score=892601.000000 s hg38.chr9_GL383541v1_alt 89617 345 + 171286 ACTTGTGGGTTACCACTGCTCTCACCTGGACCCTGGTAGGCTTTGGAAAAGCCAAGGTCTCCCCACAGTTGTAAGACATTTCA-TCCTCGACTCCAAGGTCT---CCACGGAGTGAGAAGCTTCTGGCAGCTGGCCTTTCAACAAGAACAAGAACAGGAATTTTTATTCTGTTGCAAACAGTTAACTTTTTCTCTTTTGATCCTTTACGCATAGATATTGAGGTAATATACTCA-TCCTAATAATTTGTTGATGGTGACAGTGTGTCCCCATGCCTGAAGACATAATGACCTTTTATGGTTCTTA--CCATTTTTCTTCATTCAGTATTGCTTCTCTTCATCTGAATATATT s panTro4.chr9 68655036 345 + 137840987 ACTTGTGGGTTACCACTGCTCTCACCTGGACCCTGGTAGGCTTTGGAAAAGCCTAGGTCTCCCCACAGTTGTAAGACATTTCA-TCCTCGACTCCAAGGTCT---CCACGGAGTGAGAAGCTTCTGGCAGCTGGCCTTTCAACAAGAACAAGAACAGGAATTTTTATTCTGTTGCAAACAGTTAACTTTTTCTCTTTTCATCCTTTACGCATAGATATTGAGGTAATATACTCA-TCCTAATAATTTGTTGATGGTGACAGTGTGTCCCCATGCCTGAAGACATAATGACCTTTTATGGTTCTTA--CCATTTTTCTTCATTCACTATTGCTTCTCTTCATCTGAATATATT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64810436 341 + 135191526 ACTTGTGGATTACCACTGCTCTCACTTGGATCCTGATGGGCTTTGGAAAAGCCGAGGTCTCCCCACAGTTGTAAAACATTTCA-TCCTCGACTCCAAGGTCT---CCAAGGAGTGAGAAGCTTCTGGCAGCTGGCTTTTCAACAAGAACAAGAACAGGAATTTTTATTCTGCTGCAAACAGTTAACTGTTTCTCTTTTGATCCTTTACGC----ATATTGAGGTAATATACTCA-TCCTAATAATTTGTTGATGGTGACAGTGTGTCCTCATGCCTGAAGACATGATGACCTTTTATGGTTCTTA--CCATTTTTCTTCATTCACTATCGCCTCTCTTCATCTGAATATATT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57846966 345 - 122973662 ACTTGTGGGTTACCACTGCTCTCACCTGGACCCTGGTAGGCTTTGGAAAAGCCTAGGTGTCCCCACAGTTGTAAGACATTTCA-TCCTCGACTCCAAGGTCT---CCAAGGAGTGAGAAGCTTCTGGCAGCTGGCTTTTCCACAAGAACAAGAACAGGAATTTTTATTCTGCTGCAAACAGTTAACTTTTTCTCTTTTGATCATTTACACATAGATATTGGGGTAATATACTTA-CCCCAATAATTTGCTGATGGTGACAGCGTGTCCCCATGCCTGAAGACGTGATGACCTCTTATGGTTCTTT--CCATTTTTCTTCATTCACTGTCACATCTCTTCATTTGAATATTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79780692 280 + 112192347 ACTTGTGGGTTACCACTGCTCTCACCTGGACCCTGGTAGGCTTTGGAAAAGCCTAGGTCTCTCCACAGTTGCAAGACATTTCA-TCCTCGACTCCAAGGTCT---CCAAGGAGTAAGAAGCTTCTGGCGGCTGGCTTTTCAACAAGAACAAG-ACAGGAATTTTTATTCTGCTGCAAACAGTTAACTTTTTCTCTTTTGATCCTTTACACAGAGATAT-----------------------------------------------------------------TGATGACCTTTTATGGTTCTTT--CCATTTTTCTTCATTCACTATTGCTTTTCGTCATCTGAATATTTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80860656 280 + 112612857 ACTTGTGGGTTACCACTGCTCTCACCTGGACCCTGGTAGGCTTTGGAAAAGCCTAGGTCTCTCCACAGTTGCAAGACATTTCA-TCCTCGACTCCAAGGTCT---CCAAGGAGTAAGAAGCTTCTGGCGGCTGGCTTTTCAACAAGAACAAG-ACAGGAATTTTTATTCTGCTGCAAACAGTTAACTTTTTCTCTTTTGATCCTTTACACAGAGATAT-----------------------------------------------------------------TGATGACCTTTTATGGTTCTTT--CCATTTTTCTTCATTCACTATTGCTTTTCGTCATCTGAATATTTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76909707 280 + 107442819 ACTTGTGGGTTACCACTGCTCTCACCTGGACCCTGGTAGGCTTTGGAAAAGCCTAGGTCTCTCCACAGTTGCAAGACATTTCA-TCCTCGACTCCAAGCTCT---CCAAGGAGTAAGAAGCTTCTGGCGGCTGGCTTTTCAACAAGAACAAG-ACAGGAATTTTTATTCTGCTGCAAACAgttaactttttctcttttgatcctTTACACAGAGATAT-----------------------------------------------------------------TGATGACCTTTTAtggttcttt--ccatttttcttcattcactATTGCTTCTCGTCATCTGAATATTTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81173119 344 + 108555830 ACTTGTGGGTTACCACTGCTCTCACCTGGACCCTGGTAGGCTTTGGAAAAGCCTAGGTCTCTCCACAGTTGCAAGACATTTCA-TCCTCGACTCCAAGGTCT---CCAAGGAGTAAGAAGCTTCTGGCGGCTGGCTTTTCAACAAGAACAAG-ACAGGAATTTTTATTCTGCTGCAAACAGTTAACTTTTTCTCTTTTGATCCTTTACACAGAGATATTGAGGTAATATACTCA-TCCCAATAATTTGCTGAGGGTGACAGTGTGTCCCCATGCCTGAAGACATGATGACCTTTTATGGTTCTTT--CCATTTTTCTTCATTCACTATTGCTTCTCTTCATCTGAATATTTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111408099 337 - 210400635 ACTTGTGGGTTACCACTGCTCTCACCTGGACC--------CTTTGGACAAGCCTAGGTCTCTCCACAGTTGCAAGACATTTCA-TCCTCATTTCCAAAGTTT---TCAGGGAGTGAGAAGATTCTGGTGGCTGGCTTTTCAACAAGAACAAGAACAGGAATTTGTATTCTGCTGCAAACAGTTAACTTTTTCTCTTTCAATCCTTTACACATAGATATTGAGGTAATATGCTCA-TCCCAATAATTTGCTGATGGTGACAGTGTGTCCCTATGTCTGAAGTCATTTTGCTCTTTTATGGTTCTTT--CCATTTTTCTTCATTCACTATAGCTTCTCTTCATCTGAATATTTT i calJac3.chr1 C 0 C 0 s mm10.chr19 38058142 323 - 61431566 CCTC-CGGTGTCTCACTGGTCACATCTGG-CCTTGGTAG-TTTTGTAAATCACTATGTCTCCTCAT--CTCCAAGACAGAGCAGTCCCCCAGTCTGTGGTCTTTCCTAAGTATTGCGAAGATCCTGGC--------TTTCCTCGAAAGCGAACGTAAGGACATTGGATCCTTTGCA-----------TTTTCACTCCTGATACATC-CTCACAGATAGTGAAG-AGTCCATTCAGTTTTGATTATTTACTCA---TGACTGCGTGGACCCTTAGCTGGACACAAGGCAACTGTTTGTGGTTTCTTACTCTCTGTCCTTTACTGACTGCAGTTTCTCATTATCTAAATGTTTA i mm10.chr19 C 0 C 0 e canFam3.chr1 35297807 0 - 122678785 C a score=81473.000000 s hg38.chr9_GL383541v1_alt 89962 22 + 171286 TAACCATGTCTCCAACTCTTTT s panTro4.chr9 68655381 22 + 137840987 TAACCATGTCTCCAACTCTTTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64810777 22 + 135191526 TAACCATGTCTCCAACTCCTTT i ponAbe2.chr9 C 0 I 382 s nomLeu3.chr1a 57847311 22 - 122973662 TAACCATGTCTCCAACTCTTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79780972 22 + 112192347 TAACCATGTCTCCAACTCTTTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80860936 22 + 112612857 TAACCATGTCTCCAACTCTTTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76909987 22 + 107442819 TAATCATGTCTCCAACTCtttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81173463 22 + 108555830 TAACCATGTCTCCAATTTTTTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111408436 20 - 210400635 TAACCATGTCGCCAACTCTT-- i calJac3.chr1 C 0 C 0 s mm10.chr19 38058465 20 - 61431566 AAAACATGTCTCCAACTTTA-- i mm10.chr19 C 0 C 0 s canFam3.chr1 35297807 22 - 122678785 TAACCTGGTCTCTAACTTTTTT i canFam3.chr1 C 0 C 0 a score=1259964.000000 s hg38.chr9_GL383541v1_alt 89984 355 + 171286 TTTCAAAAGTGCTCATCCTTCAGCTTATCTTGACTCTGGACAGTCTTCATCCTAACCTTAC--TGTTCTCTTTGCTCCTATTCTAACTTCTCCTTTATATCCAgagtctcaggttcaattccctgtaacagccaggcagacagtataagcaaatgacatgtgg-gctgggtgaggactgcggcaaactagatggcagagaccctgtgcaaaggttacttggctccaatgagttgctgctgtgtgagaatgtaagcccgggttgccagatcttttgatgtt---tcaagatcattaggaaggcagggga-tttttttgtgtgtgtgaaatttcccaaattttt--aaaagttggtgaatattttc s panTro4.chr9 68655403 355 + 137840987 TTTCAAAAGTGCTCATCCTTCAGCTTATCTTGACTCTGGACAGTCTTCATCCTAACCTTAC--TGTTCTCTTTGCTCCTATTCTATCTTCTCCTTTATATCCAgagtctcaggttcaattccctgtaacagccaggcagacagtataagcaaatgacatgtgg-gctgggtgaggactgcggcaaactagatggcagagaccctgtgcaaaggttacttggctccaatgagttgctgctgtgtgagaatgtaagcccgggttgccagatcttttgctgtt---tcaagatcattaggaaggcggggga-tttttttgtgtgtgtgaaatttcccaaattttt--aaaagttggtgaatattttc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64811181 358 + 135191526 TTTCAAAAGTGCTCATCCTTCAGCTTATCTTGACTCTGGACAGTCTTCATCCTAACCTTACTATATTCTCTTTGCTCCTATTCTATCTTCTCCTTTATATCCAgagtctcaggttcaatttcctgtaacagccaggcagacagtataagcaaatgatatgtgg-gctgggtgaggactgcggcaaactagatggcagagaccctgtgcaaaggctacttggctccaatgagttgctgctgtgtgagaatgtcagcccgggttgccagatcttttgatgtt---tcaagatcatcaggaaggcaggggattttttttgtgtgtgtgaaatttcccaaattttt--aaaagttggtgaatattttc i ponAbe2.chr9 I 382 C 0 s nomLeu3.chr1a 57847333 353 - 122973662 TTTCAAAAGTGCTCATCCTTCAGCTTATCTTGACTCTGGACAGTCTTCATCCTAACCTTAT--TGTTCTCTTTGCTCCTATTCTATCTTCTCCTTCATATCCAgagtctcagtttcaatttcctataacagccaggcaggtagtataagcaaatggcatgtgg-gctgggtgaagactgcggcaaactagagagcagagaccctgtacaaaggctactcggctccagtgagttgctgctgtgtgagaatgtaagcccaggttgccagatcttttgatgtt---tcaagatcatcaggaaggcagggga-tttttt--tgtgtgtgaaacttcccaaattttt--aaaagttggtgaatattttc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79780994 353 + 112192347 TTTCAAAAGTGCTCATCCTTCAGCTTATCTTGACTCTAGACCGTCTTCATCCTAACCTTAT--TGTTCTCTTTGCTCCTATTCTATCTTCTCCTTTATATCCCGAATCTCAGGTTCAGTCTcctgtaacagccaggcagacagtataagcaaatgacatgtgg-gctgggtgaggactgcggcaaactagacagcagagaccctgtgcaaaagctactcggctctaatgagttgctgctgtgtgagaatgcaagcccgggttgctagatcttttgatgtt---tcaagatcatcaggaaggcagggga-tttttt--tgtgtgtcaaatttcccaaatgttt--aaaagttggtgaatgttttc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80860958 353 + 112612857 TTTCAAAAGTGCTCATCCTTCAGCTTATCTTGACTCTAGACCGTCTTCATCCTAACCTTAT--TGTTCTCTTTGCTCCTATTCTATCTTCTCCTTTATATCCCGAATCTCAGGTTCAGTCTcctgtaacagccaggcagacagtataagcaaatgacatgtgg-gctgggtgaggactgcggcaaactagacagcagagaccctgtgcaaaagctactcggctctaatgagttgctgctgtgtgagaatgcaagcccgggttgctagatcttttgatgtt---tcaagatcatcaggaaggcagggga-tttttt--tgtgtgtgaaatttcccaaatgttt--aaaagttggtgaatgttttc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76910009 353 + 107442819 tttCAAAAGTGCTCATCCTTCAGCTTATCTTGACTCTAGACCGTCTTCATCCTAACCTTAT--TGTTCTCTTTGCTCCTATTCTATCTTCTCCTTTATATCCCGAATCTCAGGTTCAGTCTCCTGTAACAGCCAGGCAGACAGTATAAGCAAATGACATGTGG-GCTGGGTGAGGACTGCGGCAAACTAGACAGCAGAGACCCTGTGCAAAGGCTACTTGGCTCTAATGAGTTGCTGCTGTGTGAGAATGCAAGCCCGGGTTGCTAGATCTTTTGATGTT---TCAAGATCATCAGGAAGGCAgggga-tttttt--tgtgtgtgaaatttCCCAAATGTTT--AAAAGTTGGTGAATGTTTTC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81173485 353 + 108555830 TTTCAAAAGTGCTCATCCTTCAGCTTATCTTGACTCTAGACCATCTTCATCCTAACCTTAT--TGTTCTCTTTGCTCCTATTCTATCTTCTCCTTTATATCCCGAATCTCAGGTTCAGTCCcctgtaacagccaggcagacagtataagcaaatgacatgtgg-gctgggtgaggactgtggcaaactagatagcagagaccctgtgcaaaggcttctcagctctaatgagttgctgctgtgtgagaatgcaagcccaggttgctagatcttttgatgtt---tcaagatcatcaggaaggcagggga-tttttg--tgtgtgtgaaatttcccaaatgttt--aaaagttggtgaatgttttc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111408456 347 - 210400635 TTTCACAAGTGCACATACTTCAGCGTATCTTGACTCTGAACAGTCCTCATCCTAACCTTAT--TATTCTCTTTGTTCCTATTCTACTTTCTTCTTTATATCTAgagtttcaggttcaatttcctgtaacagccaggcagatagcataagcaaatgacatatggtgctaggtgaggactgcagcaaactagagagcagaaaccctgtgcaaaggctagtcgggtccagtgaattgctgctttgtgagaatgcaagcccaggttaccagatcttttgatgtt---tcaagctc---aggaagacgggggt-attttt------tgttgaatttcccagattttt--aaaaggtggtgaaaattttc i calJac3.chr1 C 0 C 0 s mm10.chr19 38058485 328 - 61431566 TGTCCAGTGTATCCATTCTACAGGTCACTTGGGCTCTGGA--GTCTACATCTTGACAACAC--CACTCTCTTTGTTAATACTCCCCCTCCTCCTT-GTACCCAGAATCTCAGACTCAGTTTTCCACAAGGGCCAGATAGAT----TAAGCAGGTGGCCTTCGG-ACTAAGTGAG---TGTGGCAAAATAGACAGTTGACA-CCTGTGCAGAG--TGGTCATCTTTGATTACCT-----TGTATAAGAATGTAAGTCCA-CTTAATAAGTATTTGGATTTTTTCTTAAATTCA----AAAAGAAGGGGa-tattta---------aaattttttcaaataattaaaaaaaataGTGAATATGTTT i mm10.chr19 C 0 C 0 s canFam3.chr1 35297829 329 - 122678785 ----TTAAGCGCCCATCCTGTAGCTTATCTTGGCTCTGGACAGTCTCCATTCTGAGACTGC--TCCTACCTCTTCT-----------GTCTCCTTTATAGCCAGACtctcacactcagtttcctaaaggagccaggcagatgttataagt--gtgacatgtgg-gctgggtgaggattgtggcaaattaggaagcacagatcctgtacaaagggtactcagctctaattagttgctgccatgtgagattgcgggtccaaagggc-agatctttttatttc---ataagatcaccaggaaggcaag----tatttt-----atgtgaaatttccccaattttt--tgaaattggtaaatattttc i canFam3.chr1 C 0 I 202 a score=312398.000000 s hg38.chr9_GL383541v1_alt 90339 85 + 171286 t--------------aaaatcacagtgtgggccaataaaacacacttgccggtcaggccctgttggccaacttctattttgcaacctTCATTTGACAAG s panTro4.chr9 68655758 85 + 137840987 t--------------aaaatcacagtgtgggccaataaaacacacttgcaggtcaggccctgttggccaacttctattttgcaacctTCATTTGACAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64811539 85 + 135191526 t--------------aaaatcacagtgtgggctaataaaacacacttgcaggtcaggccctgttagccaacttctattttgcaacctTCATTTGACAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57847686 85 - 122973662 t--------------aaaatcacagtctggtccaataaaacacatttgcaggtcaggccctgttggccaacttctattttgcaacctTCATTTGATAAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79781347 85 + 112192347 t--------------aaaatcacagtgtgggccaataaaacacatttgcaggtcaggtcctgttggccaacttctattttgcaacctTCATTTGAAAAG i rheMac3.chr15 C 0 I 5 s macFas5.chr15 80861311 85 + 112612857 t--------------aaaatcacagtgtgggccaataaaacacatttgcaggtcaggtcctgttggccaacttctattttgcaacctTCATTTGACAAG i macFas5.chr15 C 0 I 5 s papAnu2.chr15 76910362 85 + 107442819 T--------------AAAATCACAGTGTGGGCCAATAAAACACATTTGCAGGTCAGGTCCTGTTGGCCAGCTTCTATTTTGCAACCTTCATTTgacaag i papAnu2.chr15 C 0 I 5 s chlSab2.chr12 81173838 85 + 108555830 t--------------aaaatcacagtgtgggctaataaaacacatttgtaggtcaggtccttttggccaacttctattttgcaacctTCATTTGACAAG i chlSab2.chr12 C 0 I 244 s calJac3.chr1 111408803 85 - 210400635 t--------------aaaatcacaatgtgggccaataaaagacatctgcaggtcagacccagttggccaacttctATTTCGCAACCTTCATTTGATAGG i calJac3.chr1 C 0 I 5 s mm10.chr19 38058813 76 - 61431566 TAAAACAATATAAAGAAAATTACTATATGCACTGACAAAAG--------------------GTTAGCTAGCTCCTTTT---CAGCCTCTATTTTACAGG i mm10.chr19 C 0 C 0 s canFam3.chr1 35298360 85 - 122678785 t--------------aaaaacacagcatgggccaaaaaaacacaccttcaggtcaggcccagttagtcaacttctATTTTGCAGACTTTATTTTATCTG i canFam3.chr1 I 202 C 0 a score=24260.000000 s hg38.chr9_GL383541v1_alt 90424 7 + 171286 T-----TTCTTT s panTro4.chr9 68655843 7 + 137840987 T-----TTCTTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64811624 7 + 135191526 T-----TTCTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57847771 12 - 122973662 TTTCCCTTCTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79781437 7 + 112192347 T-----TTCTTT i rheMac3.chr15 I 5 C 0 s macFas5.chr15 80861401 7 + 112612857 T-----TTCTTT i macFas5.chr15 I 5 C 0 s papAnu2.chr15 76910452 7 + 107442819 t-----ttcttt i papAnu2.chr15 I 5 C 0 s chlSab2.chr12 81174167 7 + 108555830 T-----TTCTTT i chlSab2.chr12 I 244 C 0 s calJac3.chr1 111408893 7 - 210400635 T-----TTCTTT i calJac3.chr1 I 5 C 0 s mm10.chr19 38058889 7 - 61431566 -----CTTCTTT i mm10.chr19 C 0 I 399 s canFam3.chr1 35298445 7 - 122678785 T-----TCCTTT i canFam3.chr1 C 0 C 0 a score=766826.000000 s hg38.chr9_GL383541v1_alt 90431 219 + 171286 ------TACAATACATTCAGGCTTCTTAGAATAAGCTCTTTATAAGTAACCACAAATAAAAAGACTGGAGTCTCATGGAG-TTGCCTGTTTAAAACAAACGCAACTTTAAATCTAGCATTTTCATTAATTTGACCCAGCATTAGATATGATGGGGTAAATGACAGTTAAAATGACAGATCCTCTATGGCCCCTTCCCAGCTTCAAGGAAGACGCTTTCAAGAAAGG s panTro4.chr9 68655850 220 + 137840987 ------TACAACACATTCAGGCTTCTTAGAATAAGCTCTTTATAAGTAACCACAAATAAAAAGACTGGAGTCTCATGGAGCTTGCCTGTTTAAAACAAACGCAACTTTAAATCTAGCATTTTCATTAATTTGACCCAGCATTAGATATAAAGGGGTAAATGACAGTTAAAATGACAGATCCTCTATGGCCCCTTCCCAGCTTCAAGGAAGATGCTTTCAAGAAAGG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64811631 220 + 135191526 ------TACAACATGTTCAGGCTTCTTAGAATAAGCTCTTTATAAGTAACCACAAATAAAAAGACTGGAGTCTCATGGAGCTTGCCTGTTTAAAACAAACGCAACTTTAAATCTAGCATTTTCATTAATTTGACCCAGCATTAGATATAATGGGGAAAATGACAATTAAAATGACAGATCCACTATGGCCCCTTCCCAGCTTCAAGGAAGATGCTTTCAAGAAAGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57847783 220 - 122973662 ------TACAACACGTTCAGGCTTCTTAGAATAAGTTCTTTATAAGTAACCACAAATAAAAAGATTGGAGTCTCATGGAGCTTGCCTGTTTAAAACAAACGCAACTTCAAATCTAGCATTTTCATTAATTTGTCCCAGCATTAGATATAATGGGGAAAATGACAGTTAAAATGACAGATTCTCTATGGCCCCTTCCCAGCTTCAAGGAAGATGCTTTCAAGAAAGG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79781444 220 + 112192347 ------TACAACATGTTCAGGCTTCTTAGAATAAGTTACTTATAAGTAACCACAAATAAAAAGATTGGAGTCTCATGGAGCTTGCCTGTTTAAAACAAATGCAACTTTAAATCTAGCATTGTCATTAATTTGACCCAGCATTAGATATAATGGGGAAAATGACAATTAAAATGACAGATCCTCTATGGCCCCTTCCCAGCTTCAAGGAAGATTCTTTCAAGAAAGG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80861408 220 + 112612857 ------TACAACATGTTCAGGCTTCTTAGAATAAGTTACTTATAAGTAACCACAAATAAAAAGATTGGAGTCTCATGGAGCTTGCCTGTTTAAAACAAATGCAACTTTAAATCTAGCATTGTCATTAATTTGACCCAGCATTAGATATAATGGGGAAAATGACAATTAAAATGACAGATCCTCTATGGCCCCTTCCCAGCTTCAAGGAAGATTCTTTCAAGAAAGG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76910459 220 + 107442819 ------tacaacaTGTTCAGGCTTCTTAGAATAAGTTACTTATAAGTAACCACAAATAAAAAGATTGGAGTCTCATGGAGCTTGCCTGTTTAAAACAAATGCAACTTTAAATCTAGCATTGTCATTAATTTGACCCAGCATTAGATATAATGGGGAAAATGACAATTAAAATGACAGATCCTCTATGGCCCCTTCCCAGTTTCAAGGAAGATTctttcaagaaagg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81174174 220 + 108555830 ------TACAACATGTTCAGGCTTCTTAGAATAAGTTACTTATAGGTAACCACAAATAAAAAGATTGGAGTCTCATGGAGCTTGCCTGTTTAAAACAAGTGCAACTTTAAATCTAGCATTTTCATTAATTTGACCCAGCATTAGATATAATGGGGAAAATGACAATTAAAATGACAGATCCTCTATGGCCCCTTCCCAGCTTCAAGGAAGATTCTTTCAAGAAAGG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111408900 220 - 210400635 ------TGCAACATGTTCAGGCTTCTTAGAATAAATTGTTTATAAGTAACCACAAATAAAAAGGCTTAAGTCTCATGGAGCTTGCCTGTTTAAAACAAACCCAACTTTAGATCTAGCATTTTCATTAATTTGACCTAGCATTAGATATAATGGGGAAAATGGCAATTAAAATGACAGATCCTTCATGGCCCCTTCCCAACTTCAAAGAAGATGCCTTCAAGAAAGG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35298452 208 - 122678785 TCTCTTTTCAACATGCCCAGGCTTCT----------------TAAGTAATCGTATATTAAAAGGTTGGAATCTCCTAGGA-TCACTTGTTTAAGACAAATGCAACATTGGAGCTAGCATTTTCATTCATTTGACTCTGTATCGGTTCTGATTGGAAAAACGACAA-TAAAATGGCACATTCCCTATGGTCCTTGCCCAGTTTCAAAGAATATACGTTCAAGAAAGG i canFam3.chr1 C 0 I 206 e mm10.chr19 38058896 399 - 61431566 I a score=1888559.000000 s hg38.chr9_GL383541v1_alt 90650 583 + 171286 AAAAGGGATTTCTACCACAAATGGATGTTAACAAAGGGTGGTATGTGTCAAGTGCAATAAGAGTGGTCTCCTT-CCTCCATCAAAAAAGAAAGG-------TGTTGGGAATTCAGAGACAAAAGAGGTCCCTCACTGCTTGGATGTCCTAGAAGACATGATAAAAGAAGTAAACTGTATTTCGGGGATGGGTATGATTTTGA----CAAAGATGAGAAAAAGCTAAGAGCAATGATACAGTGGTTGT-GCTACaaggggtggatggtgggagagatgtggctgagaaagcagtgcaggggcaaattctaaaatgcctggaatgccaggaaagagattttaactttatttcattgacaatgggaggcca-cacaggtgtttgggcaggggagagacaccatcacagcagtgtatttagatggattaacatgacagagattatttcaatagatggagagtaaaaaggtggagcaagAGTACAGAAGAATCCCCCAGAAACTGTTTCTTCAGATGCATCTGGGGTCACTTACATAAGAAATTGAGATAAGAC-----------------AAAAAAAAAA------GCATGTTTATGTACTTCCTACCTTTAAAAGCAAAGCAA s panTro4.chr9 68656070 587 + 137840987 AAAAGGGATTTCTACCACAAATGGATGTTAACAAAGGGTGGTATGTGTCAAGTGCAATAAGAGTGGTCTCCTT-CCTCCATCAAAAAAGAAAGG-------TGTTGGGAATTCAGAGACAAAAGAGGTCCCTCACTGCTTGGATGTCCTAGAAGACATGATAAAAGAAGTAAACTGTATTTCAGGGATGGGTATGATTTTGA----CAAAGATGAGAAAAAGCTAAGAGCAATGATACAGTGGTTGT-GCTACAAGGGGTGGATGGGGGGAGAGATGTGGCTGAGAAAGCAGTGCAGGGGCAAATTCTAAAATGCCTGGAATGCCAGGAAAGAGATTTTAACTTTATTTCATTGACAATGGGAGGCCA-CACAGGTGTTTGGGCAGGGGAGAGACACCATCACAGCAGTGTATTTAGATGGATTAACATGACAGAGATTATTTCAATAGATGGAGAGTAAAAAGGTGGAGCAAGAGTACAGAAGAATCCCCCAGAAACTGTTTCTTCAGATGCATCTGGGGTCACTTACATAAGAAATTGAGATAAGAC-----------------AAAAAAAAAA--AAAAGCATGTTTATGTACTTCCTACCTTTAAAAGCAAAGCAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64811851 584 + 135191526 AAAAGAGATTTCTACCACAAATGAATGTTAACAAAGGGTGGTATGTGTCAAGTGCAATAAGAGTAGTCTCCTT-CGTCCACCAAAAAAGAAAGG-------TGTTGGGAATTCAGAGACAAAAGAGGTCCCTCACTGCTTGGATGTCCTAGAAGACATGACAAAAGAAGTAAACTGTATTTTGGGGATGGGTATGATTTTGA----CAAAGATGAGAAAAAGCTACGAGCAATGATACAGTGGTTGT-GCTACaaggggtgaatggggggagagatgtggctgagaaagcagtgcaggggcaaattctaaaatgcctggaatgccaggaaagagattttaactttatttcattgacagtgggaggcca-cacaggtgtttgggcaggggagagacaccatcACAGCAGTGTATTTAGATGGATTAACATGACAGAGATTATTTCAATAGATGGAGAGTAAAAAGGTGTAGCAAGAGTACAGAAGAATCCTCCAGAAACTGTTTCTTCAGATGCATCTGGGGTCACTTACATAAGAAATTGAGATAAGAC-----------------AAAAAAAAAAAAAAAAGCATGTTTATGTACTTCCTACCTTTA-----AAAGCAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57848003 581 - 122973662 AAAAGAGATTTCTACCACAAATGGATGTTAACAAAGGGTGGTATGTGTCAAGTGCAATAAGAGTGGTCTCCTT-CCCCCACCAAAAAAAAAAGG-------TGTTGGGAATTCAGAGACAAAAGAGGTCCCTCACTGCTTGGATGTCCTAGAAGACATGATAAAAGAAGTAAACTGTATTTCGGGGATGGGTATGATTTTGA----CAAAGATgagaaaaagctaagagcaatgatacagtggtggt-gctacaaggggtggatgcggggagagatgtggctgagaaagcagtgcaggggcaaattctaaaatgcctggaatgccaggaaagagattttaactttatttcattgacaatgggaggcca-cacaggtgtttgggcaggggagagacaccatcACAGCAGTGTATTTAGGTGGATTAACATGACAGACATTATTTCAATAGATGGAGAGTAAAAAGGTGAAGCAAGAGTACAGAAGAATCCCCCAGAAACTGTTTCTTTAGATGCATCTGGGGTCACTTACATAAGAAATTGAGATAAGAC-----------------AAAAAAAAAA---AAAGCATGTTAATGCACTTCCTACCTTTA-----CAAGCAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79781664 590 + 112192347 AAAAGAGATTTTTATCACAACTGGATGTTAACAAAGGGCGGTATGTGTCAAGTGCAATAAGAGTGGTCTCCAT-CCCCCACCAAAAAAGAAAGG-------TGTTGGGAATTCAGAGACAAAAGAGGCCCCTCACTGCTTGGATGTCCTAGAAGACATGATAAAAGAAGTAAACCGTATTTCGGGGATTGGTATGATTTTGA----CAAAGATGAGAAAAAGCTAAGAGCAATGATACAGTGGTGGTAGCTACGAGGGGTGGATGGGGGAAGAGATGTGGCTGAGAAAGCAGTACAGGGACAAATTCGAAAATGCCTGGAATGCCAGGTAAGAG------ACTTTATTTCATTGACAATGAGAGGCCA-CACAGGTGTTTGGGCAGGGGAGAGACACCATCACAGCAGTGTTTTTAGATGGATTAACATGACAGGGATTATTTCAGTAGATGGACAGTAAAAAGGTGGAGCAAGAGTACAGAAGAATCCCCCAGAAACTGTTTCTTCAGATGCATCTGGGGTCACTTACATAAGAAATTGAGATAAGACC----aaaaaaaaaaaaaaaaaaaaaa--aaaaGCATGTTTATGTACTTCCTACCTTTA-----AAACCTA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80861628 594 + 112612857 AAAAGAGATTTTTATCACAACTGGATGTTAACAAAGGGCGGTATGTGTCAAGTGCAATAAGAGTGGTCTCCTT-CCCCCACCAAAAAAGAAAGG-------TGTTGGGAATTCAGAGACAAAAGAGGCCCCTCACTGCTTGGATGTCCTAGAAGACATGATAAAAGAAGTAAACCGTATTTCGGGGATTGGTATGATTTTGA----CAAAGATGAGAAAAAGCTAAGAGCAATGATACAGTGGTGGTAGCTACGAGGGGTGGATGGGGGAAGAGATGTGGCTGAGAAAGCAGTACAGGGACAAATTCGAAAATGCCTGGAATGCCAGGTAAGAG------ACTTTATTTCATTGACAATGGGAGGCCA-CACAGGTGTTTGGGCAGGGGAGAGACACCATCACAGCAGTGTTTTTAGATGGATTAACATGACAGGGATTATTTCAGTAGATGGACAGTAAAAAGGTGGAGCAAGAGTACAGAAGAATCCCCCAGAAACTGTTTCTTCAGATGCATCTGGGGTCATTTACATAAGAAATTGAGATAAGACCaaaaaaaaaaaaaaaaaaaaaaaaaa--aaaaGCATGTTTATGTACTTCCTACCTTTA-----AAACCTA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76910679 576 + 107442819 aaaagagatttttatCACAACTGGATGTTAACAAAGGGCGGTATGTGTCAAGTGCAATAAGAGTGGTCTCCTt-cccccaccaaaaaagaaaGG-------TGTTGGGAATTCAGAGACAAAAGAGGCCCCTCACTGCTTGGATGTCCTAGAAGACATGATAAAAGAAGTAAACCGTATTTCGGGGATTGGTATGATTTtga----caaagatgagaaaaagctAAGAGCAATGATACAGTGGTGGTAGCTACGAGGGGTGGATGGGGGAAGAGATGTGGCTGAGAAAGCAGTACAGGGACAAATTCGAAAATGCCTGGAATGCCAGGTAAGagattttaactttatttcattGACAATGGGAGGCCA-CATAGGTGTTTGGGCAGGGGAGAGACACCATCACAGCAGTGTTTTTAGAAGGATTAACATGACAGGGATTATTTCAGTAGATGGACAGTAAAAAGGTGGAGCAAGAGTACAGAAGAATCCCCCAGAAACTGTTTCTTCAGATGCATCTGGGGTCACCTACATAAGAAATTGAGATAAGAC------------------------aaa--aaaaGCATGTTTATGTACTTCCTACCTTTA-----AAACCTA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81174394 576 + 108555830 AAAAGAGATTTTTATCACAACTGGATGTTAACAAAGGGCAGTATGTGTCAAGTGCAATAAGAGTGGTCTCCTT-CCCCCACCAAAAAAGAAAGG-------TATTGGGAATTCAGAGACAAAAGAGGCCTCTCACTGCTTGGATGTCCTAGAAGACGTGATAAAAGAAGTAAACCATATTTCGGGGATTGGTATGATTTTGA----CAAACATgagaaaaagctaagagcaatgatacagtggtggtagctacgaggggtggatgggggaagagatgtggctgagaaagcagtgcaggggcaaatttgaaaatgcctggaatgccaggtaagagattttaactttatttcattgacaatgggaggcca-cataggtgtttgggcaggggatagacaccatcACAGCAGTGTTTTTAGATGGATTAACATGACAGGGATTATTTCAGTAGATGGACAGTAAAAAGGTGGAGCAAGAGTACAGAAGAATCCCCCAGAAACTGTTTCTTCAGATGCATCTGGGGTCAGTTACATAAGAAATTGAGATAAGAC------------------------AAA--AAAAGCATGTTTATGTACTTCCTACCTTTA-----AAATCTA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111409120 583 - 210400635 AAAAGTGATTGCTACCACAAATGGATGTTAACAAAGGGTGGTA--TGTCAAGCGCTGTAAGAGTGGTCCCCTT-CCCCCACCAAAAAAGAAAGAATTCCTCTGCTGGGAATTCAGAGACAAAGGCGGTCCCTTACTGCTTGGATGTCCTAGAAAACATGATAAAAGAAGTAAACTGTATTTGAAAGATTGGTATGATTTTGAAAGGCAAAGATGAGAGAAGGCTGAGAGCAATGATATGGTGATGGTAGCTGCAAGGGGTGGATTGGGGAAGAGATATGGCTGAGAAAGTAGCATAGGTGCAGATTCTAAAATGGCTGGAATGCCAGGAAAGAGATTTTAACTTTATTTTATTGACAATGGGGGGCCA-CAGAGGTGTTTGGGCAGGGGATAAATACCATCACAGCAGTGTATTTAGATGGATTAACATGAGGGTGATTATCTCAATAGATGGAGAGTAAAAAGGCAGAGCAAGAAAACAGAAGAATCCCCCAGAAACTATTTCTTCAGATGCATCTAGGGTCACTTACATAAGAAA-TGAGATAAGG-------------------------AAA--AAAAACATGTTTATGTGCTTCCTACCTTTA-----AAAGTAA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35298866 543 - 122678785 GAAAAAGATTTCTATCATACATGGATG-TAAGACAAGGTAGCATGTGTCAAGTGATCTAAGAGTGGTCCCCCCACTTCCCTCATAAAAGGAAAG-------TGCGGGGTATTCAGAGACAAGAGAGATCACTTACTGCTTGGACATTCTAGAAGACATGATGAAAGAAGTCAACTGCGTTTGCGGAATGGATAGGACCTTGA----C-AGGCCGAGACAAGAGAGGGAG-AGTGATGCA----TGGTAGCAATCATGGG-GTATCGGAGGAGAGATATGATTGGGAAAGTGGTGTAGGGGCAAATTCGCAAAGGCCTCAAATGCCAGGAAAGAGAACTTAACTTTATAATGTCGACAGTGGGAGACCATTGGAGGTCTTTGAGCA-AGGAGAGATGCAGTCACAACAATGTAGTTAGTTTAGTTAACCAGACAGTGTTTATCTCGGTAAATAGAGGACCAAACAGTAGAACAAGAGAACA-AAAAACACTCTAGAAATGATTTCTTTAGATACATCTTAGGTCACTTACATAAATAATTGTGATTAGaa-----------------aacaaaacaa--aacaa------------------------------------- i canFam3.chr1 I 206 C 0 e mm10.chr19 38058896 399 - 61431566 I a score=94731.000000 s hg38.chr9_GL383541v1_alt 91233 55 + 171286 GTTTCAGC-----------CCtttttttttt---------ctttttt----gagacagagtcttgctctgttgcacagg s panTro4.chr9 68656657 57 + 137840987 GGTTCAGC-----------CCtttttttttt-------ttctttttt----gagacagagtcttgctctgttgcacagg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64812435 61 + 135191526 GGTTGAGC-----------Cttttttttttt---ttttttttttttt----gagatggagtcttgctctgttgtacagg i ponAbe2.chr9 C 0 I 166 s nomLeu3.chr1a 57848584 62 - 122973662 GGTTCAGC----CCCCCCACCCCCCCttttt---------ttttttt----gagatggagtctcgctctgtcgcccagc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79782254 53 + 112192347 GGTTCAGC------Cttttcttttctttttttttttttttttttttt-------------tttttttttg-------ag i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80862222 69 + 112612857 GGTTCAGC------CTTttcttttctttttttttttttttttttttt----gagatggagtcttgctctgttgcccagg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76911255 79 + 107442819 GGttcagcctttttcttttcttttcttttttttttttttttttttttttttgagatggagtcttgctctgttgcccagg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81174970 64 + 108555830 GGTTCAGC-----------Ctttttcttttttttttttttttttttt----gagatggagtcttgctctgttgcccagg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111409703 53 - 210400635 GGTTTAGC-----------ACttttttgttg-----------ttttt----gagacagagtctcactgtgtcgcccagg i calJac3.chr1 C 0 C 0 e mm10.chr19 38058896 399 - 61431566 I e canFam3.chr1 35299409 0 - 122678785 C a score=208488.000000 s hg38.chr9_GL383541v1_alt 91288 96 + 171286 ctgga-------------------------------------------------------gtgcagtggtgcaatctcagctcagtgcaacctccacctcccaggttcaagcaattc--------------------tccctgcctcagcctcccaagtagctgggattac s panTro4.chr9 68656714 96 + 137840987 ctgga-------------------------------------------------------gtgcagtggtgcaatctcagctcagtgcaacctccacctcccgggttcaagcaattc--------------------tccctgcctcagcctcccaagtagctgggattac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64812662 95 + 135191526 ctgga-------------------------------------------------------gtgcagtggtgcaatctcagctcagtgcaacctccacctcccaggttcaagcaattc--------------------t-cctgcctcagcctcccaagtagctgggattac i ponAbe2.chr9 I 166 C 0 s nomLeu3.chr1a 57848646 96 - 122973662 ctgga-------------------------------------------------------gtgcagtggtgaaatctcagctcactgcaacctccacctcccaggttcaagcaattc--------------------cccctgcctcagccttccaagcagctgagattac i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79782307 114 + 112192347 atggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---------------------------------------------------------nnnnnnnnnnnnnnnnnnnntccctgcctcagcctcccaagtagctgggattac i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80862291 96 + 112612857 ctgga-------------------------------------------------------gtgcagtggtgtgatctcagctcactgagacctccacctcccgggttcaagcaattc--------------------tccctgcctcagcctcccaagtagctgggattac i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76911334 96 + 107442819 ctgaa-------------------------------------------------------gtgcagtggtgtgatctcagctcactgagacctccacctcccgggttcaagcaattc--------------------tccctgcctcagcctcccaagtagctgggattac i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81175034 96 + 108555830 ctgga-------------------------------------------------------gtgcagtggtgtgatctcagctcactgcgacctctacctcccgggttcaagcagttc--------------------tccctgcctcagcctcccaagtagctgggattat i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111409756 95 - 210400635 -ctga-------------------------------------------------------gtgcagtggtgcaatctcagctcactgcaacctccgcctccaggattcaagcaattc--------------------tccctgactcagcctcccaagttgctgggattac i calJac3.chr1 C 0 C 0 e mm10.chr19 38058896 399 - 61431566 I e canFam3.chr1 35299409 0 - 122678785 C a score=2257235.000000 s hg38.chr9_GL383541v1_alt 91384 712 + 171286 agacacccaccactttgt--ccagctaatttttgtatttttagtaaagatggggtttccccatgttggccaggc----tggtctcgaactcctgaccttaggtgatccgcctgcctcggcctcccaaagtgctgTTTAGCACTTTTGACAGTGACAAAGGATTGGAGTTTTTCTACGGATA---GCCCATATTTTTACCTTATAAATAAGTGGCCCGTCCTCATTTGGGGCCCTTTGTAGGAACCACACTATAAATAAGTGCTCTGTGTAGAGTGAATGATAACCAGTCATGGCAAAGTAATCCATGAATCTGCATGAGTATTTTAAAAGACAGTTGGGTTAACTCAAAATAATAAAATGTCACTAACTCTGGAGAGCTTTATGTAAATGAGTAAAGCAACTAACAATCTCTTGGGGTTTCAGGAAAGAAAAGCCAGATGACTTTTTCTTCATGTGTGACAATAGGCTAGTTTTGCGATTGTTTTTCTGTCATATCTTAAGAATCTAATACAAGGAACAGAAAG-GATCTTGAAAGGCTGATGCATCAAAATGACGATTATTTCTTGTGTCATTATCACAGTTGCACAGAGAGGCAAATTTAACAATGGGGAAGTGTTAAAGAACTTTTCCCAAATCATTTAAAAATTCGTTCCAAAGTCAAACCCTGTGGGTAACCAATGTTA-TGATTCAGTGA----TTATTCAGTGTTTCATTTTTCATCCTC s panTro4.chr9 68656810 712 + 137840987 agacacccaccactttgt--ccagctaatttttgtatttttagtaaagacagggtttccccatgttggccaggc----tggtctcgaactcctgaccttaggtgatccgcccgcctcggcctcccaaagtgctgTTTAGCACTTTTGACAGTGACAAAGGATTGGAGTTTTTCTACAGATA---GCCCATATTTTTACCTTATAAATAAGTGGCCCATCCTCATTTGGGGCCCTTTGTAGGAACCACACTATAAATAAGTGCTCTGTGTAGAGTGAATGATAACCAGTCATGGCAAAGTAATCCATGAATCTGCATGAGTATTTTAAAAGACAGTTGGGTTAACTCAAAATAACAAAATGTCACCAACTCTGGAGAGCTTTATGTAAATGAGTAAAGCAACTAACAATCTCTTGGGGTTTCAGGAAAGAAAAGCCAGATGACTTTTTCTTCATGTGTGACAATAGGCTAGTTTTGAGATTGTTTTTCTGTCATATCTTAAGAATCTAATACAAGGAACAGAAAG-GATCTTGAAAGGCTGATGCATCAAAATGACGATTATTTCTTGTGTCATTATCACAGTTGCACAGAGAGGCAAATTTAACAACAGGGAAGTGTTAAAGAACTTTTCCCAAATCATTTAAAAATTCGTTCCAAAGTCAAACCCTGTGGGTAACCAATGTTA-TGATTCAGTGA----TTATTCAGTGTTTCATTTTTCATCCTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64812757 707 + 135191526 agacacccaccactttgt--ccagctaatttttgtatttttagtaaagatggggtttccccatgttggccaggc----tggtcttgaactcctgaccttaggtgatccacccacctcggcctcccaacgtgctgTTTAGCACTTTTGACAGTGACAAAGGATTGGAGTTTTTCTACGGATA---GCCCATATTTTTACCTTATAAGTAAGTGGCCCATCCTCATTTGGGGCCCTTTGTAGGAACCACACTATAAATGAGTGCTGTGTGTAGAGTGAATGATAACCAGTCATGGCAAAGTAATCCATGAATCTGCATGAGTATTTTAAAAGACAGTTGGGTTAACTC-----AATAAAATGTCACCAACTCTGGAAAGCTTTATGTAAATGAGTAAAGCAACTAACAATCTCTTGGGGTTTCAAGAAAGAAAAGCCAGATGACTTTTTCTTCATGTGTGACAACAGGCTAGTTTTGAGATTGTTTTTCTGTCATATCTTAAGAATGTAATACAAGGAACAGAAAG-GATCTTGAAAGGCTGATGCATCAAAATGATGATTATTTCTTGTGTCATTATCACAGTTGCATAGAGATGCAAATTTAACAATGGGGAAGTGTCAAAGAATTTTTCCCAAATCATTTAAAAATTAGTTCCAAAGTCAAACCCTGTGGGTAATCAATGTTA-TGATTCAGTGA----TTATTCAGTGTTTTGTTTTTCATCCTC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57848742 703 - 122973662 agatacccaccactttgt--ctaactaatttttgtatttttagtaaagacggggtttccccatgttggccaggc----tggtctcgagctcctgaccttaggtgatccacccgccttggcctcccaaagtgctgTTTAGCACTTTTGACAATGACAAAGGATTGGAGTTTTCCTACGGATA---GCCCATAGTTTTACCTTATAAATAAGTGGCCCATCCTCATTTGGGGCCCTTTGTAGGAACCACACTATAAATGAGTGCTCTGTGTGGAGTGAATGATAACCAGTCATGGCAAAGTAATCCATGAATCTGCATGAGTATTTTAAAAGACA----GGTTAACTCAAAATAATAAAATGTCACCAACTCTTGAGAGCTTTATGTAAATGAGTAAAGCAACTAACAATCTCTTGGGGTTTCAAGAAAGAAAAGCCAGATGACTTTTTCTTCATGTGTGACAATAGGCTAGTTTTGAGATTGTTTTTCTGTCATATCTTAAGAATCTAATACAAGGAACAGAAAG-GATCTTGAAAGGCTGATGCATCAAAATGGCAATTATTTCTTGTGTCTTTATCACAGTTGCACAGAGATGCAAATTTAACAATGGGGAAGTGTTAAAGAACTTTTCCCAAATCAGTTAAAAATTAGTTCCGAAGTCAAACCCTGTGGATAACCAACATTA-TGATTCAGTGA----TTATTCAGTG-----TTTTTCACCCTC i nomLeu3.chr1a C 0 I 3 s rheMac3.chr15 79782421 712 + 112192347 agacacctaccacttcat--ccagttaatttttgtatttttagtaaggacagggtttccccatgttggccaggc----tggtctcaaactcctgaccttaggtgatctgcctgcctcagcctcccaaagtgctgTTTAGCACTTTTGACAGTGACAAGAGATTGAATTTTTTCTATGGATA---GTCCATATTTTTACCTTATAAATAAGTGGCCTATCCTCATTTGGGGCCCTTTGTAGGAACCACACTATAAACGAGTGCTCTGTGTACAGTGAATGATAACCAGTCATGGCAAAGTAATCCATGAATCTTCATGAGTATTTTAAAAGACAGTTGGGTTAACTCAAAATAATAAAATGTCACCAACTCTTGAGAGCTTTATGTAAATGAGTAAAGCAACTAACAATCTCTTGGGGTTTGAAGAAAGAAAAGCCCGATGATTTTTTCTTCATGTGTGACAATAGGCTAGTTTTGAGATTGTTTTTCTGTCCTATCTTAAGAATCTAATACAAGGAACAGAAAG-GATCTTGAAAGGCTGATGCATCAAAATGGCAATTATGTCTCCTGTCATTATCACAGTTGCACAGAGATGCAAATTTAACAATGGGGAAGTGTTAGAGAACTTTTCCCAAATCATTTAAAAATTAGTCCCAAAGTCAAACCCTGTGGGTAACCAATATTA-TGATTCAGTGA----TTATTCAGTGTTTCATTTTTCATCCTC i rheMac3.chr15 C 0 I 3 s macFas5.chr15 80862387 712 + 112612857 agacacctaccacttcat--ccagttaatttttgtatttttagtaaggacagggtttccccatgttggccaggc----tggtctcaaactcctgaccttaggtgatctgcctgcctcagcctcccaaagtgctgTTTAGCACTTTTGACAGTGACAAGAGATTGAATTTTTTCTATGGATA---GTCCATATTTTTACCTTATAAATAAGTGGCCTATCCTCATTTGGGGCCCTTTGTAGGAACCACACTATAAACGAGTGCTCTGTGTACAGTGAATGATAACCAGTCATGGCAAAGTAATCCATGAATCTTCATGAGTATTTTAAAAGACAGTTGGGTTAACTCAAAATAATAAAATGTCACCAACTCTTGAGAGCTTTATGTAAATGAGTAAAGCAACTAACAGTCTCTTGGGGTTTGAAGAAAGAAAAGCCCGATGATTTTTTCTTCATGTGTGACAATAGGCTAGTTTTGAGATTGTTTTTCTGTCCTATCTTAAGAATCTAATACAAGGAACAGAAAG-GATCTTGAAAGGCTGATGCATCAAAATGGCAATTATGTCTCCTGTCATTATCACAGTTGCACAGAGATGCAAATTTAACAATGGGGAAGTGTTAGAGAACTTTTCCCAAATCATTTAAAAATTAGTTCCAAAGTCAAACCCTGTGGGTAACCAATATTA-TGATTCAGTGA----TTATTCAGTGTTTCATTTTTCATCCTC i macFas5.chr15 C 0 I 3 s papAnu2.chr15 76911430 712 + 107442819 agacacctacCACTTCat--ccagtcaatttttgtatttttagtaaggacagggtttccccatgttggccaggc----tggtctcaaactcctgaccttaggcgatctgcctgcctcagcctcccaaagtgctgtttaGCACTTTTGACAGTGACAAGAGATTGAATTTTTTCTATGGATA---GTCCATATTTTTACCTTATAAATAAGTGGCCTATCCTCATTTGGGGCCCTTTGTAGGAACCACACTATAAACGAGTGCTCTGTGTACAGTGAATGATAACCAGTCATGGCAAAGTAATCCATGAATCTGCATgagtattttaaaagacagttgggttaactcaaaataataaaatgtcaccAACTCTTGAGAGCTTTATGTAAATGAGTAAAGCAACTAACAATCTCTTGGGgtttgaagaaagaaaagcccaATGACTTTTTCTTCATGTGTGACAATAGGCTAGTTTTGAGATTGTTTTTCTGTCCTATCTTAAGAATCTAATACAAGTAACAGAAAG-GATCTTGAAAGGCTGATGCATCAAAATGGCAATTATGTCTCCTGTCATTATCACAGCTGCACAGAGATGCAAATTTAACAATGGGGAAGTGTTAGAGAACTTTTcccaaatcatttaaaaattagttccaAAGTCAAACCCTGTGGGTAACCAATATTA-TGATTCAGTGA----TTATTCAGTGTTTCATTTTTCATCCTC i papAnu2.chr15 C 0 I 3 s chlSab2.chr12 81175130 712 + 108555830 agacacctaccactttgt--ccagttaatttttgtatttttagtaaggacagggtttccccatgttggccaggc----ttgtctcaaactcctgaccttaggtgatctgcccgcctcggcctcccaaagtgctgTTTAGCACTTTTGACAGTGACAAGAGATTGAAGTTTTTCTATGGATA---GCCCATATTTTTACCTTATAAATAAGTGGCCTATCCTCATTTGGGGCCCTTTGTAGGAACCACACTATAAATAAGTGCTCTGTGTACAGTGAATGATAACCAGTCATGGCAAAGTAATCCATGAATCTGCATGAGTATTTTAAAAGACAGTTGGGTTAACTCAAAATAATAAAATGTCACCAACTCTTGAGAGCTTTATGTAAATGAGTAAAGCAACTAACAATCTCTTGGGGTTTGAAGAAAGAAAAGCCAGATGACTCTTTCTTCATGTGTGACAATAGGCTAGTTTTGAGATTGTTTTTCTGTCGTATCTTAAGAATCTAATACAGGGAACAGAAAG-GATCTTGAAAGGCTGATGCATCAAAATAGCAATTATTTCTCCTGTCATTATCACAGTTGCACAGAGATGCAAATTTAACAATGGGGAAGTGTTAGAGAACTTTTCCCAAATCATTTAAAAATTAGTTCCAAAGTCAAACCGTGTGGGTAACCAATATGA-TGATTCAGTGA----TTATTCGGTGTTTCATTTTTCATCCTC i chlSab2.chr12 C 0 I 3 s calJac3.chr1 111409851 714 - 210400635 agatgcccaccaccacatgcctggctaatttttgtatttttcgtagagacagtgtttccccatgttagccaggcaaaatggtctcgaactcctgacctcaggtgatgcgcccacctcagcctcccaaagtgctgTTTAGCACTTTTGACTTTGACAAAAGATTGGAGTTTCCCTATGCATA---GCCCATATTTTGACCCTATAAATAAGTGGTACTTCCTCATTTGGGGCCCTTTGTAGGAACCACATTATAAATGAGTGCTCTGTGTAGAGTGAATGATAACCAGTCATGGCAAAGCAGTCCATGAATCTGCATGAGTATTTTTAAAGACAATTGGGTTAACTCAAAATAATAAAATGTCACCAACTCTTGAGAGCTTTGTATAAATGTGTACAGCAACTAACAGTCTCTTGGGGTTTCAGGAAAGAAAAGCCAGATGACTTTTTCCTCATGTGTGACAATAGGCTAGTTTT----TAGTTTTTCTGTCATATTTTAAGAATCTAATACAAGGAACAGAAAG-GATCTTGAAAGGCTGATGCATTGAAATGGCAATTATTTCTTGTATCATTATCACAGTTGCACAGAGATGCAAATTGAACAATGGGAAAGTGTTAGAGAACTTTTCCCAAATCATTTAAAAATTAGTTCCAAAGTCAATTCCTCTGGGTAACCAATGTTACCAATTCAGTGA----TTATTCAGTGTTTCA-TTTTCATCCTC i calJac3.chr1 C 0 I 3 s canFam3.chr1 35299409 516 - 122678785 aaaaacccaaaacaTT-T--TCACTTACTTCTTCTA--------AAAGAAAG-------------------GGC--------------------------------------------------------------TAGTACTTTTGGAAATGACAAATGACTGGAATATATATATATACACACATACATATTTTGGCCCTACGCACGCAGAGCCCAACTCCATTTGTGGCCA-TTGTAGGAGCCACACTGTA----AGTGTCATGTGGTGAGTGGGTGATAACCTAGCATGACAGATTAGTCCACCAATCT-------------------------GGTTCATTCAAAACAACAAAATGTTGCCAACTCTTAAAAGCTTTGTTTCAAGGAATATGACAACTTAC--------------------------------ATAACTTTCTCC-----------------------------------------CATATCTTAAGAATTTAGTAAAGGAAATAGAAAGAAATCTTGAAAGAGTAATACATTAATAATGTTATAACTCTTGATGTCATTAACATAGATG--------TCTGAACTTAAATATGGGGAAGTGTCAGAAAACTTCTCCCAAATCACTTA-------GTTCCAGAGTCAGATGCACTGAGTAACCGATATGA-TGACTTAATGACCACTTGTTCTATGCATCATTTTTCCTTTTT i canFam3.chr1 C 0 I 326 e mm10.chr19 38058896 399 - 61431566 I a score=462597.000000 s hg38.chr9_GL383541v1_alt 92096 126 + 171286 GATGGCAAGAGGTAGCTGGCTGGGGAGAACATATATTTCTTGGAAGAGGCAACAGAGCAGTGGACTAGTGTCAAATCATCCATTTGCTTGTGTTACCTGAGTGCAATTCATCCTTTGAAGAGTGTA s panTro4.chr9 68657522 126 + 137840987 GATGGCAAGAGGCAGCTGGCTGGGGAGAACATATATTTCTTGGAAGAGGCAACAGAGCAGTGGACTAGTGTCAAATCATCCATTTGCTTGTGTTACCTGAGTGCAATTCATCCTTTGAAGAGTGTA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64813464 126 + 135191526 GATGGCAAGAGGCAGCTGGCTGGGGAGAACATATATTTCTTGGAAGAGGCAACAGACCAATGGACTAATATCAAATCATCCATTTGCTTGTGTTACCTGAGTGCAATTCATCCTTTGAAGAGTGTA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57849448 126 - 122973662 GATGGCAAGAGGCAGCTGGCTGGGGAGAACATATATTTCTTGGAAGAGGCAACAGACCAATGGACTAGTGTCAAATCATCCATTTGGCTATGTTACCTGAGTGCAATTCATCCTTTGAAGAGTGTA i nomLeu3.chr1a I 3 C 0 s rheMac3.chr15 79783136 126 + 112192347 GATGGCAAGAGGCAGCTGGCTGGGGAGAACATATATTTCTTGGAAGAGGCAACAGACCAATGGACTAGTGTCAAATCATCCATTTGACTATGTTATCTGAGTGCAATTCATCCTTTGAAGAGTGTA i rheMac3.chr15 I 3 C 0 s macFas5.chr15 80863102 126 + 112612857 GATGGCAAGAGGCAGCTGGCTGGGGAGAACATATATTTCTTGGAAGAGGCAACAGACCAATGGACTAGTGTCAAATCATCCATTTGACTATGTTATCTGAGTGCAATTCATCCTTTGAAGAGTGTA i macFas5.chr15 I 3 C 0 s papAnu2.chr15 76912145 126 + 107442819 GATGGCAAGAGGCAGCTGGCTGGGGAGAACATATATTTCTTGGAAGAGGCAACAGACCAATGGACTAGTGTCAAATCATCCATTTGACTATGTTATCTGAGTGCAATTCATCCTTTGAAGAGTGTA i papAnu2.chr15 I 3 C 0 s chlSab2.chr12 81175845 126 + 108555830 GATGGCAAGAGGCAGCTGGCTGGGGAGAACATATATTTCTTGGAAGAGGCAACAGACCAATGAACTAGTGTCAAATCATCCATTTGACTATGTTACCTGAGTGCAATTCATCCTTTGAAGAGTGTA i chlSab2.chr12 I 3 C 0 s calJac3.chr1 111410568 125 - 210400635 GATGGTGAGAGGCAGCTGGCTGGGGAGAACATATATTTCTTGGAAGAGGCAACAGA-CAAGAGATTAGTGTCAAATCATCCATTTGACTATGTTACCTGAGTATAATTCATCCTTTGAAGAGTATA i calJac3.chr1 I 3 C 0 s canFam3.chr1 35300251 126 - 122678785 GATGATGAGGACCAGTTGGTTAGGGAGAACACATATTTCTTGGGAGAGGCAACGGATCTGTATCCTACTATCAGGTCATCCATTTGACTTTGTCACTTGAGTGTCATCCATCCTCTGAGGAGTGCA i canFam3.chr1 I 326 I 4 e mm10.chr19 38058896 399 - 61431566 I a score=11716.000000 s hg38.chr9_GL383541v1_alt 92222 4 + 171286 ATTC s panTro4.chr9 68657648 4 + 137840987 ATTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64813590 4 + 135191526 ATTC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57849574 4 - 122973662 ATTC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79783262 4 + 112192347 ATTC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80863228 4 + 112612857 ATTC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76912271 4 + 107442819 ATTC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81175971 4 + 108555830 ATTC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111410693 4 - 210400635 ATAC i calJac3.chr1 C 0 C 0 e mm10.chr19 38058896 399 - 61431566 I e canFam3.chr1 35300377 4 - 122678785 I a score=250554.000000 s hg38.chr9_GL383541v1_alt 92226 74 + 171286 TCCTAGTCCTTCCTCATGCCCATCTG-AATCATAGAATATTCTGACTATATTTGTGTCCCT-AGGGATAGagaaag s panTro4.chr9 68657652 74 + 137840987 TCCTAGTCCTTCCTCATGCCCATCTG-AATCATAGAATATTCTGACTATATTTGTGTCCCT-AGGGATAGagaaag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64813594 74 + 135191526 TCCTAGTCCCTCCCCATGCCCATCTG-AATCATAGAATATTCTGACTATATTTGTGTCCCT-AGGGATAGagaaag i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57849578 75 - 122973662 TCCTAGTCCTTCCTCACGCCCATCTGCAATCATAGAATATTCTGACTATATTTGTGTCCCC-AGGGATAGagaaag i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79783266 75 + 112192347 TCCTAGTCCTTCTTCACGCCCATCTGCAATCATAGAATATTCTGACTATATTTGTGTCCCC-AGGGATAGagaaag i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80863232 75 + 112612857 TCCTAGTCCTTCTTCACGCCCATCTGCAATCATAGAATATTCTGACTATATTTGTGTCCCC-AGGGATAGagaaag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76912275 75 + 107442819 TCCTAGTCCTTCTTCACGCCCATCTGCAATCATAGAATATTCTGACTATATTTGTGTCCCC-AGGGATAGAGAAAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81175975 75 + 108555830 TCCTAGTCCTTCCTCACGCCCATCTGCAGTCATAGAATATTCTGACTATATTTGTGTCCCC-AGGGATAGagaaag i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111410697 75 - 210400635 TCCTAGTCTTTCCTCATGCTCATCTGCAACCATAGAATATTCTGACTATATTTCTGCCCTG-AGGGTTACAGAAAG i calJac3.chr1 C 0 I 95 s canFam3.chr1 35300381 76 - 122678785 CCCTAGACTTTCCTCACTCTCATTTGTGACCATGGAACATTCCGACCTCAGCAGTGTCAATAAGgaacagagaaag i canFam3.chr1 I 4 C 0 e mm10.chr19 38058896 399 - 61431566 I a score=605268.000000 s hg38.chr9_GL383541v1_alt 92300 217 + 171286 agccccaggctaggagtccaaatacttgtgctccaggcccagttatcagagtactttattaccttgactaaacccttaatttcttagtgtctccattgatgcatctgcaaatgagcaatttgaattcaatgatctctaagatgcgtttgagttccaatattttaCTTTTCTCTCCTTGCCTAATGCTATTTACCAAAATCTCCAAGTTCACCATTCA s panTro4.chr9 68657726 217 + 137840987 agccccaggctaggagtccaaatacttgtgctccaggcccagttatcagagtactttattaccttgactaaacccttaacttcttagtgtctccattgatgcatctgcaaatgagcaatttgaattcaatgatctctaagatgcatttgagttccaatattttaCTTTTCTCTCCTTGCCTAATGCTATTTACCAAAATCTCCAAGTTCACCATTCA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64813668 217 + 135191526 agccccaggctaggagtccaaatacttgtgctccaggcccagttatcagagtactttattacctggactaaacccttaacttcttagcatctccactgatgcatctgcaaatgagcaatttgaattcaatgatctccaagatgcatttgagttccaatattttaCTTTTCTCTCCCTGCCTAATGCTATTTACCAAAATCTCCAACTTCACCATTCA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57849653 217 - 122973662 agccccaggataggagtccaaatacttgtgctccaggcccagttatcagagtactttattaccttgactaaacccttaacttcttagggtctccactgacgcatctgcaaatgagcaatttgaattcaatgatctctaagatgcctttgagttccaatattttaCTTTTCTCTCCTTGCCTAATGCTATTTACCAAAATCTCCAAATACACCATTCA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79783341 216 + 112192347 agccccaggctaggagtccaaatacttgtgctccaggctcagttatcagagtactttattaccttgactaagccctcaacttcttagggtctccattgacacatctgcaaatgagcaatttgaattcaatgat-tcaaagatggctttgagttccaatattttacttttctctcattGCCTAATGCTATTTACCAAAATCTCCAAATTCACCATTCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80863307 216 + 112612857 agccccaggctaggagtccaaatacttgtgctccaggctcagttatcagagtactttattaccttgactaagccctcaacttcttagggtctccattgacacatctgcaaatgagcaatttgaattcaatgat-tcaaagatggctttgagttccaatattttacttttctctcattGCCTAATGCTATTTACCAAAATCTCCAAATTCACCATTCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76912350 216 + 107442819 AGCCCCAGGCTAGGAGTCCAAATACTTGTGCTCCAGGCTCAGTTATCAGAGTACTTTATTACCTTGACTAAGCCCTCAACTTCTTAGGGTCGCCATTGACACATCTGCAAATGAGCAATTTGAATTCAATGAT-TCAAAGATGGCTTTAAGTtccaatattttacttttctctcattGCCTAATGCTATTTACCAAAATCTCCAAATTCACCATTCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81176050 216 + 108555830 agccccaggctaggagtccaagtacttgtgctccaggcccagttatcagagtactttattaccttgactaagccctcaacttcttagggtctccattgatgcatctgcaaatgagcaatttgaattcaatgat-tcaaagatggctttgagttccaatattttacttttctctcattGCCTAATGCTATTTACCAAAATCTCCAAATTCACCGTTCA i chlSab2.chr12 C 0 C 0 s canFam3.chr1 35300457 204 - 122678785 aggaccaggctaggagttcaa-cacttgtgctccagacccagttctccgagtgctggattgctttaagcagtccttcatcttctcaaggtctccactggcctattttcaaatgaagaatttgaattccataatctctaagatagctttgagttctagtattttaGT------------CCTAATGCTGTACATCCAAATCTCCAAATTCACCACTTA i canFam3.chr1 C 0 I 16 e mm10.chr19 38058896 399 - 61431566 I e calJac3.chr1 111410772 95 - 210400635 I a score=2332789.000000 s hg38.chr9_GL383541v1_alt 92517 1006 + 171286 GTGAGATCTATTTCAAAATGGCTTGAGTCCCTCCTGGATACTTATAAGCACATAGCATTTGGCATTAGaaaaaaaaaaaaaaaaa---GAGGACTAAAGGGACCAAGGGGTGAGAAAAAGAGGCCCTGGATTTTCTAATGTCTTGACCAGAAGGGTCAAGACGTAAGCATAGTGGTGTGGTCATCCTTGAGAAGCACTAAGACTTGCTGGTAGGGTGCTGTCACCCCTGACATAAGTACTTGCCTctct----------tccctcttcccctcccatctccctctctctattttcccattcttcctcttcttcctTGGCTATTCTAGAATACTTCCCCAAGGCAGGCAGCTTTTCCTACTAGCATTGCTTAGTCCCCATATGTCAATACTGTGGGCTGAAAAAGAAGCTGACCTGAGGGCTGAAGGGAGGAAGTCTAAGAAGA----CTACGCACCTTCCAGCCATCCAGGGGATTATATAGTAAGTCCAGTCAGAGCCTCAACACCAGAATGACGCttcttcattgatca-ttattcattccttcactcattcaACAAACACATAATAAGCACTTTTTACATGTATTTATATTTACATTCTTGCATACCCTGGTGACATAAAAAA--AGTCATTctggatagagaaaatatggcacatatacaccatggaatactatgcagctataaagaaggatgagttcatgtcctttgcagggacatggatgaaactggaaaccatcattctcagcaaactaacacaggaacagaa----aaacaccacacattctcactcataagtgggagctgaacaatgagaacacatggacacagggagggaaacatcacacaccagggtctgtcag-gggatggagatagcattagaagaaatacctaatgtagatgatgggttgatgggtgcagcaaaccaccatggcacatgtatatctatgtaacaaacctgcacagtctgcacatgtatcccagaatttaaagtataattt-------------taaaaaaaTGATGCTTTAAAAAAAAA----A-- s panTro4.chr9 68657943 1009 + 137840987 GTGAGATCTATTTCAAAATGGCTTGAGTCCCTCCTGGATACTTATAAGCACATAGCATTTGGCATTAGaaaaaaaaaaaaaaaaaaaaGAGGACTAAAGGGACCAAGGGGTGAGAAAAAGAGGCCCTGGATTTTCTAATGTCTTGACCAGAAGGGTCAAGACATAAGCATAGTGGTGTGGTCATCCTTGAGAAGCACTAAGACTTGCTGGTAGGGTGCTGTCACCCCTGACATAAGTACTTGCctctct----------tccctcttcccctcccatctccctttctctattttcccattcttcctcttcttcCTTGGCTATTCTAGAATACTTCCCCAAGGCAGGCAGCTTTTCCTACTAGCATTGCTTAGTCCCCATATGTCAATACTGTGGGCTGAAAAAGAAGCTGACCTGAGGGCTGAAGGGAGGAAGTCTAAGAAGA----CTACGCACCTTCCAGCCATCCAGGGGATTATATAGTAAGTCCAGTCAGAGCCTCAACACCAGAATGACGCTTCTTCATTGATCA-TTATTCATTCCTTCACTCATTCAACAAACACATAATAAGCACTTTTTACATGTATTTATATTTACATTCTTGCATACCCTGGTGACATAAAAAA--AGTCATTctggatagagaaaatatggcacatatacaccatggaatactatgcagctataaagaaggatgagttcatgtcctttgcagggacatggatgaaactggaaaccatcattctcagcaaactgacacaggaacagaa----aaacaccacacatcctcactcataagtgggagctgaacaatgagaacacatggacacagggaaggaaacatcacacaccagggtctgtcag-ggggtggagatagcattagaagaaatacctaatgtagatgacgggttgatgggtgcagcaaaccaccatggcacatgtgtatctatgtaacaaatctgcacagtctgcacatgtatcccagaatttaaagtataattt-------------ttaaaaaaTGATGCTTTAAAAAAAAA----A-- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64813885 1011 + 135191526 GTGAGATCTATTTCAAAATGGCTTGAGTCCCTCCTGGATACTTATAAGCACATAGCATTTGGCATTAGAAAAAAAAAAAAAAAAA---GAGGACTAAAGGGACCAAGGGGTAAGAAAAAGAGGCCCTGGATTTTCTAATGTCTTGACCAGAAGGGTCAAGATGTAAGCATAGTGGTGTGGTCATCCTTGAGAAGCACTAAAACTTGCTGGTAGGGTGCTGTCATCCCTGACATAAGCACTTGCctctct----------tccctcttcccctcccatctccctctctccattttcccattcttcctcttcttcCTTGGCTATTCTAGAGTACTTCCCCAAGGCAGGCAGCTTTTCCTACTAGCATTG-TTGGTCCCCATATGTCAATACTGTGGGCTGAAAAAGAAGCTGATCTGAGGGCTGAAGGGAGGAAGTCTAAGAAGA----CTACCCACCTTCCAGCCATCCATGGGATTACATAGTAAGTCCAGTCAGAGCCTCAACACCAGAATGACGCTTCTTCATTGATCACTTATTCATTCCTTCACTCATTCAACAAACACATAATAAGCACTTTTTACATGTATTTATATTTACATTCTTGCATACCCTGGTGATATAAAAAAACAGTCATTctggatacagaaaatatggcacatatacaccatggaatactatgcagctataaagaaggatgagttcatgtcctttgcaaggacatggatgaaactggaaaccatcattctcagcaaactgacacaggaacagaaaaacaaacaccgcatgttctcactcataagtgggagctgaacaatgagaacacatggacacagggagggaaacatcacacaccagggtctgtcac-ggggtggagatagcattaggagaaatacctaatgtagacgacaggttgacgggtgcagcaaaccaccatggcacatgtatatctatgtaacaaacgtgcacattctgcacatgtatcccagaacttaaagtataatTT-------------TTTAAAAATGATGCTTTAAAAAAAAA------- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57849870 1027 - 122973662 GTGAGATCTATTTCAAGATGGCTTGAGTCCCTCCTGGATACTTAAAAGCACATAGCATTTGGTATTagaaaaaaaaaaagaagaa---gaagaCTAAAGGGACCAAGGGGTGAGAAAAAGAGGCCCTAGATTTTCTATTGTCTTGACCAGAAGGGTCAAGACGTAAGCATGGTGGTGTGGTCATCCTTGAGAAGCACTAAGACTTGCTGGTAGGGTGCTGTCACCCCTGACATAAACACTTGCCTCTTTCCTCTCCCACTCCCTCTTCCCCTCCAATCTCCCTCTCTCCATTTTCCCATTCTCCCTCTTCTTCCTTGGCTATTATAGAATACTTCCCCAAGGCAGGCAGCTTTTCCTACTAGCATTGCTTGGTCCCCCTATGTCAATACTGTTGGCTGAAAAAGAAGCTGACCTGAGGGCTGAAGGGAGGAAGTCTAAGAAGA----CTACGCACCTTCCAGCCATCCATGGGATTATATAGTAAGTCCAGTCAGAGCCTCAACATCAGAATGATGCttcttcattgatcacttattcattccttcactcattcaACAAACACATAATAAGCACTTTTTACATGTATTTATATGTACATTCTTGCATACCCTGGTGATATAAAAAAACAGTCATTctggataaagaaaatgtggcacatatacaccatggaataccatgcagctataaaaaaggatgagttcatgtcctttgcagggacgtggatgaaactggaaaccattgttctcagcaaactaacacaggaacagaaaaacaaacactgcacgttctcactcataagtgggagctgaacaatgagaacacatggacacagggagggaaacatcacacactggggtctgtcaa-ggggtggagatagcattaggagaaatacctaatgtagatgacgggttgatgggtgcagcaaaccaccatggcacatgtatacctatgtaacaaacctgcacattctgcacatatatcccagaacttgaagtataattt-------------ttaaaaaaTGATGCTTTAAGAAAAAAAAAAA-- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79783557 1018 + 112192347 GTGAGATCTATTTCAAAATGGCTTGAGTCCCTCCTGGATACTTATAAGCACACAGCATTTGGCACTAGAAGAAAAG------------GAGAACTAAAGGAACAAAGGGTTGAGAAAAAGAGGCCCTGGATTTTCTAGTATCTTGACCAGAAGGGTCAAGACGTAGGCATAGTGGTGTGGTCATCCTTGAGAAGCACTAAGACTTGCTGGTAGGGTGCTGCCACCCCTGACATAAGCACTTGcctctctcctctcccactccctttttccctcccatctccttctctccattttcccattcttcctcttcttTCTTGGCTATTCTAGAATACTTCCCCAAGGCAGGCAGCTTTTCCCACTAGCATTGCTTGGTACCCATATGTCAATACTGTGGGCTGAAAAAGAAACTGACCCGAGGGTTGAAGGGAGGAAGTCTAAAAAGATCTTCTACCTACCTTCCAGCAATCCATGGGATTAC---------CCAGTCAGAGCCTCAACACCAGAATTACGCTTCTTCATTGATCACTTATTCATTCCTTCACTCATTCAACAAACACATAATAAGCACTTTTTACATGTATTTATATTTACATTCTTGCATACCCTGGTGATGTAAAAAAACAGTCATTctggataaagaaaatgtggcacatatacaccacagaatactatgcagttataaaagaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaactaacacaggaacagaaaaccaaacgccgcatgttctccctcataagcggaagctgaacaatgagaacacatggacacagggtggggaacatcacacactggggcctgttagcagggtggagatagcattaggagaaatacctaatgtagatgacgggttgatgggtacagcaaaccaccatggcgcatgtatacctgtgtaacaaacctgcacatttgacacatgtatcccagaactcaaagtatagttt------aaaaaaaaaaaaaAAAGATGCTTAAAAAAAAGA---AA-- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80863523 1020 + 112612857 GTGAGATCTATTTCAAAATGGCTTGAGTCCCTCCTGGATACTTATAAGCACACAGCATTTGGCACTAGAAGAAAAG------------GAGAACTAAAGGAACAAAGGGTTGAGAAAAAGAGGCCCTGGATTTTCTAGTATCTTGACCAGAAGGGTCAAGACGTAGGCATAGTGGTGTGGTCATCCTTGAGAAGCACTAAGACTTGCTGGTAGGGTGCTGCCACCCCTGACATAAGCACTTGCctctctcctctcccactccctttttccctcccatctccttctctcCATTTTCCCATTCTTCCTCTTCTTTCTTGGCTATTCTAGAATACTTCCCCAAGGCAGGCAGCTTTTCCCACTAGCATTGCTTGGTACCCATATGTCAATACTGTGGGCTGAAAAAGAAACTGACCCGAGGGTTGAAGGGAGGAAGTCTAAAAAGATCTTCTACCTACCTTCCAGCAATCCATGGGATTAC---------CCAGTCAGAGCCTCAACACCAGAATTACGCttcttcattgatcacttattcattccttcactcattcaACAAACACATAATAAGCACTTTTTACATGTATTTATATTTACATTCTTGCATACCCTGGTGATGTAAAAAAACAGTCATTctggataaagaaaatgtggcacatatacaccacagaatactatgcagttataaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaactaacacaggaacagaaaaccaaacgccgcatgttctccctcataagcggaagctgaacaatgagaacacatggacacagggtggggaacatcacacactggggcctgttggcagggtggagatagcattaggagaaatacctaatgtagatgacgggttgatgggtacagcaaaccaccatggcgcatgtatacctgtgtaacaaacctgcacatttgacacatgtatcccagaactcaaagtatagttt----aaaaaaaaaaaaaAAAAAGATGCTTAAAAAAAAGA---AA-- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76912566 1019 + 107442819 GTGAGATCTATTTCAAAATGGCTTGAGTCCCTCCTGGATACTTATAAGCACACAGCATTTGGCACTAGAAGAAAAG------------GAGAACTAAAGGAACAAAGGGTTGGGAAAAAGAGGCCCTGAATTTTCTAGTGTCTTGACCAGAAGGGTCAAGACGTAGGCATAGTGATGTTGTCATCCTTGAGAAGCACTAAGACTTGCTGGTAGGGTGCTGCCACCCCTGACAT-AGCACttgcctctctcctctcccactccctttttccctcccatctccttctctccattttcccattcttcctcttcttccttggcTATTCTAGAATACTTCCCCAAGGCAGGCAGCTTTTCCCACTAGCATTGCTTGGTACCCATATGTCAATACTGTGGGCTGAAAAAGAAGCTGACCCGAGGGTTGAAGGGAGGAAGTCTAAAAAGATCTTCTACCTACCTTCCAGCAATCCATGGGATTAC---------CCAGTCAGAGCCTCAACACCAGAATTACGCTTCTTCATTGATCActtattcattccttcactcattcaacaaacacataataagcactttttacatgtatttatatttacattcttGCATACCCTGGTGATGTaaaaaaaCAGTCattctggataaagaaaatgtggcacatatacaccacagaatactatgcagttataaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaactaacacaggaacagaaaaccaaacgccgcatgttctccctcataagcggaagctgaacaatgagaacacatggacacagggtggggaacatcacacactggggcctgttggcagggtggagatagcattaggagaaatacctaatgtagatgacgggttgatgggtacagcaaaccaccatggcgtatgtatacctatgtaacaaacctacacatttgacacatgtatcccagaactcaaagtatagttt----aaaaaaaaaaaaaaaaaagatgcttaaaaaaaaga---aa-- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81176266 1024 + 108555830 GTGAGATCTATTTCAAAATGGCTTGAGTCCCTCCTGGATACTTATAAGCACACAGCATTTGGCACTAGAAGAAAAG------------GAGAACTAAAGGAACAAAGGGTTGAGAAAAAGAGGCCCTGGATTTTCTAATATCTTGACCAGAAGGGTCAAGACGTAAGCATAGTGGTGTGGTCATCCTTGAGAAGCACTAAGACTTGCTGGTAGGGTGCTGCCACCCTTGATATAAGCACTTGCCTCTCTCCTCTCCTATTCCCTTTTCCCCTCCCATCTCCTTCTCTCCATTTTCCCATTCTTCCTCTTCTTCCTTGGCTATTCTAGAATACTTCCCCAAGGCAGGCAGCTTTTCCCACTAGCATTGCTTGGTACCCATATGTCAATACTGTGGGCTGAAAAAGAAGCTGACCTGAGGGTTGAAGGGAGGAAGTCTAAGAAGATCTTCTACCTACCTTCCAGCAATCTATGGGATTAT---------CCAGTCAGAGCCTCAACACCAGAATTACGCttcttcattgatcacttattcattccttcactcattcaACAAACACATAATAAGCACTTTTTACATGTATTTATATTTACATTCTTGCATACCCTGGTGATGTaaaaaaaaa--cattctggataaacaaaatgtggcacatacacaccacagaatactatgcagttataaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaactaacacaggaacagaaaaccaaacgccgcatgttctccctcataagtggaagctgaacaatgagaacacatggacacagggtggggaacatcacacactggggcctgttggcagggtggagatagcattaggagaaatacctaatgtagatgacgggttgatgggtacagcaaaccaccatggcacatgtatacctatgtaacaaacctgcacatttgacacatgtatcccagaactcaaagtgtagtttaaaaaaaaaaaaaaaaaaaaaagatgcttaaaaaaaaaa---aaag i chlSab2.chr12 C 0 C 0 e mm10.chr19 38058896 399 - 61431566 I e canFam3.chr1 35300661 16 - 122678785 I e calJac3.chr1 111410772 95 - 210400635 I a score=289751.000000 s hg38.chr9_GL383541v1_alt 93523 116 + 171286 ACAGTCATTAACCTCAAAGAGTTTACAGGAACcaacttttcccaaaatgtccttccctataataccagtttttagtaaactaatccttgtatgggacacaaaggtgatatgtggtc s panTro4.chr9 68658952 116 + 137840987 ACAGTCATTAACCTCAAAGAGTTTACAGGAACcaacttttcccaaaatgtccttccctataataccagtttttagtaaactaatccttgtatgggacacaaaggtgatatgtggtc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64814896 114 + 135191526 --AGTCATTAACCTCAAAGAGTTTATAGGAACCAACTTTTCCCAAAATGCCCTTCCCTATAATACCAGTTTTTAGTAAACTAATCCTTATATGGGGCACAAGGGTGATATGtggtc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57850897 116 - 122973662 ACAGTCATTAACCTCAAAGAGTTTACAGGAACcaacttttcccaaaatgtccttccctataataccagtttttagtaaactaatccttatatggggcacaagggtgatatgtggtc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79784575 93 + 112192347 AAAATCATTAACCTCAAAGAGTTTATAGGAACCAACTTTTCCCAAAATGTCCTTCC-----------------------CTAATCCTTATATGGAGCACaagggtgatatgtggtc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80864543 93 + 112612857 AAAATCATTAACCTCAAAGAGTTTATAGGAACCAACTTTTCCCAAAATGTCCTTCC-----------------------CTAATCCTTATATGGAGCACaagggtgatatgtggtc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76913585 93 + 107442819 aaaatcattaacctCAAAGAGTTTATAGGAACCAACTTTTCCCAAAATGTCCTTCC-----------------------CTAATCCTTATATGGAGCACAAGGGTGATATGTGGTC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81177290 93 + 108555830 aaaGTCATTAACCTCAAAGAGTTTATAGGAACCAACTTTTCCCAAAATGTCCTTCC-----------------------CTAATCCTTATATGGAGCACaagggtgatatgtggtc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111410867 116 - 210400635 ATAGTCATTACCCTCAAAGAGTTTACAGGAACCAACTTTTCCCAAAACTTCCTTCCCTATAATAACAGTTTTTAGTATACTAATTCTTATATGGGGCACaagggtgatatgtggtc i calJac3.chr1 I 95 C 0 e mm10.chr19 38058896 399 - 61431566 I e canFam3.chr1 35300661 16 - 122678785 I a score=1705680.000000 s hg38.chr9_GL383541v1_alt 93639 515 + 171286 aaataaactggggaaactctgcattaaagaaagctaaacagatttctttatttcaggatttctcaccacctgtaatatagtt-ctgtgctcatgtacattatggcatttctcagaTTATCTGAATACCAAAATGCTACATAAACTTGCAAGCATGCACAGTAATGTATGACTAATAGAGGTATGAAATAAATGATATGAAACCACAG-ACA----AAAGATTACCTTGGTTTT-GGGGTACAGAGAAGGCCCTCTTAAGGAAGTAATAGTAGAACTGGAA------------------------------TTTGGCCAGATGCATAAGGGGGAGACAAATGTAGCATGTGCAAAAGTGTAGAGGCATGAGAGTGGATGGTTTATTTTATATTTGGAGAGCATTTGAGAATCCCAAGGTATGTGATCATGGCAGAGGAA-CCCCTGAGTTCCAGGCTACATTCCTACTTATGATTAGCAGGAAGCCTGACTGCCTGCATTCCACTC-TTTCCTGCTATTTCACTCCAAGTTCTCTTCAACCTTTGGACTAATATT----- s panTro4.chr9 68659068 515 + 137840987 aaataaactggggaaactctgcattaaagaaagctaaacagatttctttgtttcaggatttctcaccacctgtaatatagtt-ctgtgctcatgtacattatggcatttctcagaTTATCTGAATACCAAAATGCTACATAAACTTGCAAGCATGCACAGTAATGTATGACTAATAGAGGTATGAAATAAATGATATGAAACCACAG-ACA----AAAGATTACCTTGGTTTT-GGGGTACAGAGAAGGCCCTCTTAAGGAAGTAATAGTAGAACTGGAA------------------------------TTTGGCCAGATGCATAAGGGGGAGACAAATGTAGCATGTGCAAAAGTGTAGAGGCATGAGAGTGGATGGTTTATTTTATATTTGGAGAGCATTTGAGAATCCCAAGGTATGTGATCATGGCAGAGGAA-CCCCTGAGTTCCAGGCTACATTCCTACTTATGATTAGCAAGAAGCCTGACTGCCTGCATTCCACTC-TTTCCTGCTATTTCACTCCAAGTTCTCTTCAACCTTTGGACTAATATT----- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64815010 515 + 135191526 aaataaactggggaaaccctgcattaaagaaagctaaacagatttctttatttcaggatttctcaccacttgtaatatagtt-ctgtgctcatgtacattatggcatttctcagaTTATCTGAATACCAAAATGCTACATAAACTTGCAAGCATGCACAGTAATGTATGACtaatagaggtatgaaataaatgatatgaaaccacag-aca----aaatattaccttggtttt-ggggtacagagaaggccctcttaaggaagtaatagtagaactggaa------------------------------tttggccagatgcataagggggagacaaatgtagcatgtgcaaaagtgtagaggcatgagagTGGATGGTTTATTTTATATTTGGAGAGCATTTGAGAATCCCAAGGTATGTGATCATGGCAGAGGAA-CCCCTGAGTTCCAGGCTACATTCCTACTTATGATTAGCAGGAAGGCTGATTGCCTGCATTCCACTC-TTTCCTGCTATTTCACTCCAAGTTCTCTTCAACCTTTGGACTAATATT----- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57851013 514 - 122973662 aaataacctggggaaaccctgcattaaagaaagctaaacagatttctttatttcaggatttctcaccacctgtaatatagtt-ctgtgctcatgtacattatgGCATTTCTCAAATTATCTGAATACCAAAATGCTACATAAACTTGCAAGCATGCATAGTAATGTATGACtaatagaggtatgaaataaatgatatgaaaccacag-aca----aaagattaccttggtttt-ggggtacagggaaggccctcttaaggaagtaatagtaaaactggaa------------------------------tttggccagatgcataagggggagacaaatgtagcatgtgc-aaagtgtagaggcatgagagTGGATGGTTTATTTTATATTTGGAGAGCATTTGAGCATCCCAAAGTATGTGATCATGGCAGAGGAA-CCCCTGGGTTCCAGGCTACATTCCTACTTATGATTAGCAGGAAGCCTGATTGCCTGCATTCCACTC-TTTCCTGCTATTTCACTCCAAGTTCTCCTCGACCTTTGGACTAATATT----- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79784668 515 + 112192347 aaataaactggggaaaccctgcattaaagaaagctaaacagatttctttatttcaggatttcccaccacctttaatatagtt-ctgtgctcatgtacattACGGCATTTCTCAAATTATCTGAATACCAAAATGCTACATAAACTTGCAAGCACGCACAGTAATGCATGACtaatagaggtatgaaataaatgatatgaaaccacag-aaa----aaagactaccttggtttt-ggggtacagagaaggctctcttgaggaaggaatagcagaacgggaa------------------------------tttgaagaaatggataagggggagacaaacgcagcatgtgcaaaagtgtagaggcatgagagTGGATGGTTTATTTTATGATTGGACAGCATTTGAGAAGCACAAGGTATGTGATGATGGCAGAGGAA-CCCCTAGGTCGCAGGCTACATTCCTACTTATGATTAGCAGGAAGCCTGATTGCCTGCATTCCAATC-TTTCCTGTTATTTCACTCCAAGTCCTCTTCAACCTTTGGACTAATATT----- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80864636 515 + 112612857 aaataaactggggaaaccctgcattaaagaaagctaaacagatttctttatttcaggatttcccactaccttgaatatagtt-ctgtgctcatgtacattatgGCATTTCTCAAATTATCTGAATACCAAAATGCTACATAAACTTGCAAGCATGCACAGTAATGCATGACtaatagaggtatgaaataaatgatatgaaaccacag-aaa----aaagactaccttggtttt-ggggtacagagaaggctctcttgaggaaggaatagcagaacgggaa------------------------------tttgaagaaatggataagggGGAGACAAACGcagcatgtgcaaaagtgtagaggcatgagagTGGATGGTTTATTTTATGATTGGACAGCATTTGAGAAGCACAAGGTATGTGATGATGGCAGAGGAA-CCCCTAGGTCGCAGGCTACATTCCTACTTATGATTAGCAGGAAGCCTGATTGCCTGCATTCCAATC-TTTCCTGTTATTTCACTCCAAGTCCTCTTCAACCTTTGGACTAATATT----- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76913678 516 + 107442819 AAATAAACTGGGGAAACCCTGCATTAAAGAAAGCTAAAGAGATTTCTTTATTTCAGGATTTCTCACCACCTTTAATATAGTT-CTGTGCTCATGTACATTATGGCATTTCTCAAATTATCTGAATACCAAAATGCTACATAAACTTGCAAGCATGCACAGTAATGCATGACTAATAGAGGTATGAAGTAAATGATATGAAACCACAGaaaa----aaaGACTACCTTGGTTTT-GGGGTACAGAGAAGGCTCTCTTGAGGAAGGAATAGCAGAACGGGAa------------------------------tttgaagaaatggataagGGGGAGACAAACGCAGCATGTGCAAAAGTGTAGAGGCATGAGAGTGGATGGTTTATTTTATGATTGGACAGCATTTGAGAAGCACAAGGTATGTGATGATGGCAGAGGAA-CCCCTAGGTCGCAGGCTACATTCCTACTTATGATTAGCAGGAAGCCTGATTGCCTGCATTCCAATC-TTTCCTGTTATTTCACTCCAAGTCCTCTTCAACCTTTGGACTAATATT----- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81177383 515 + 108555830 aaataaactgggaaaaccctgcattaaagaaagctaaacagatttctttatttcaggatttctcatcacctttaatacagtt-ctgtgctcatgtacattatgGCATTTCTCAAATTATCTGAA-ACCAAAATGCTACATAAACTTGCAAGCATGCACAGTAATGCATGACtaatagaggtatgaaataaatgatatgaaaccacag-aca----aaagactaccttggtttt-ggggtacagacaaggctctcttgaggaaggaatagcagaactggaa------------------------------tttgaagaaatggataagggggagacaaatgCAGCATGTGCAAGAGTGTAGAGGCATGAGAGTGGATGGTTTATTTTATGATTGGACAGCATTTGAGAAGCACAAGGTATGTGATGATGGCAGAGGAACCCCCTGGGTCGCAGGCTACATTCCTACTTATGATTAGCAGGAAGCCTGATTGCCTGCATTCCAATC-TTTCCTGTTATTTCACTCCAAGTCCCCTTCAACCTTTGGACTAATATT----- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111410983 507 - 210400635 aaataaactaaagaaaccctgcattaaagacagctaaacagatttctttatttcaggatttctcaccacctttaatatagttggtatgcccatgtacattatgGCATTTCTCAAATTATCTGAATACCGAAATGCTACATAAACTTGTAAGCAT-----------------taatagaggtatgaaataaatgatatgagaccacag-aca----aaagattaccttagtttt--gggtacagagaagactctctagtggaagttatagcagaacaggaagatggataagggggagacaaatgcggcatctttggccaaatggataaggtgaagactaatacagcatatgcaaaagtgtagaggcgtgagagTGGATGGTTTATTTTATGTTTGGAGAGTATTGAAGGATGCCAAGGTATGTGATAATGGCACAGGAG--CCGTAGGTCCCAGGCTGCATTCCTACTTATGATTAGCAAGTAGCCTGATTGCCTGCATT---------------------ACTCCAAGTTCTCTTCAACCTTTGGACTAATATT----- i calJac3.chr1 C 0 C 0 s canFam3.chr1 35300677 509 - 122678785 aaataaactagggaaaccctgagctgaagaaagctacacagacttctttgtttcaggacttcttggtgcctttaatacagtt-ctgtgttaatgggtattatgGCATTTCTCAAATTATTCAAATACCAAAATACT--------CTGTAAGCATGCACAATGATGCATGACTAACAGAGCTGTGAAATAAAtgatatgggaccacag-aaaagtgaaagattgccttggttttgggggttcagggaaagctttctagaagaagtcatctcagaactggaa------------------------------tttggctagatggataag--------aagtaCAGCATATGCAGAGGCGTACAGGCATGAGAGTGGATACTTTATTCAGTGATTGGAGAGCATTTGAAAGTTCTGGGATATGAGGTGATGGCAGAGTAA-CACCCAGACCTCA-GTTATGCTCCTGCTCATGACAAGTCTGCAGCCTGGGTGCCTACGTTCTACTCATTTTCCCCTGACTCTCTGCTGTTTCTCTTGAACTTCTACACTGATGATCAGTT i canFam3.chr1 I 16 C 0 e mm10.chr19 38058896 399 - 61431566 I a score=216695.000000 s hg38.chr9_GL383541v1_alt 94154 101 + 171286 TTGTCCATTCATTAGCCAACATCCCCACTCAaca------------cac------------------------------------------------acacacacaca-cacacacacacacacacacacacacacacacacaGTC----------------------CTC-ATGCCTGGAGTCC s panTro4.chr9 68659583 113 + 137840987 TTGTCCATTCATTAGCCAACATCCCCACTCAacatacacacacacacac------------------------------------------------acacacacaca-cacacacacacacacacacacacacacacacacaGTC----------------------CTC-ATGCCTGGAGTCC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64815525 90 + 135191526 TTGCCCATTCATTAGCCAACATCCC-----------------------c------------------------------------------------acatacacaca-cacacacacacacacacacacacacacacacacaGTC----------------------CTC-ATGCCTGGAGTCC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57851527 161 - 122973662 TTGCCCATTCATTAGCCAACATCCCCACTCAacacacacacacacacacactcacacacacaTATTTTGCCCATTCATTAGTCAACATCCCCACTCAACATACATaca-cacacacacacacacacacacacacacacacaGAGTC----------------------CTC-GTGCCTGGAGTGC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79785183 78 + 112192347 TTGGCCATTCATTAGCCAACATCCCCACTCA-------------------------------------------------------------------------------------acacacacacacacacacacacacacacTC----------------------CTCTAAGCCTGGAGTGC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80865151 100 + 112612857 TTGGCCATTCATTAGCCAACATCCCCACTCAacacac--------------------------------------------------------------acacacaca-cacacacacacacacacacacacacacacacacacTC----------------------CTCTAAGCCTGGAGTGC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76914194 70 + 107442819 TTGGCCATTCATTAGCCAACATCCccactca---------------------------------------------------------------------------------------------acacacacacacacacacactc----------------------ctctaaGCCTGGAGTGC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81177898 128 + 108555830 TTGGCCATTCATTAGCCAACATCCCCACTCAacacaca--------cac------------------------------------------------aaacacacaca-cacacacacacacacacacacacacacacacacacTCTCTGTCTCTCACACACACTCCTCTGTAAGCCTGGAGTGC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111411490 103 - 210400635 GTGCCCATTTGTTGGCCAACATCCCCACTCAacacacac----------------------------------------------------------acacacacaca-cacacacacacacacacacacacacacacacGGAGTC----------------------CTC-ATGCCTGGAGTTC i calJac3.chr1 C 0 I 118 s mm10.chr19 38059295 96 - 61431566 tttttcatcca--aaccacaacaACCACTCAACAC--------------------------------------------------------------ACATATGCTCATcacacacacacacacacacacacacacacacacacTC----------------------C---GTGCATGAACACC i mm10.chr19 I 399 C 0 s canFam3.chr1 35301186 83 - 122678785 GTGGCCAGACAGCTGTC----TCCTCACCTAAAa---------------------------------------------------------------------------cacacacacacacacacacacacatacaTTCAGACCC----------------------CTC-ACACATGGGCTCC i canFam3.chr1 C 0 C 0 a score=16871.000000 s hg38.chr9_GL383541v1_alt 94255 8 + 171286 TCTGTAAG s panTro4.chr9 68659696 8 + 137840987 TCTGTAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64815615 8 + 135191526 TCTGTAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57851688 4 - 122973662 TCT----G i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79785261 8 + 112192347 TCTGTAAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80865251 8 + 112612857 TCTGTAAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76914264 8 + 107442819 TCTGTAAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81178026 8 + 108555830 TCTGTAAG i chlSab2.chr12 C 0 C 0 s mm10.chr19 38059391 6 - 61431566 --CATAAA i mm10.chr19 C 0 I 1 s canFam3.chr1 35301269 8 - 122678785 CATATAAG i canFam3.chr1 C 0 C 0 e calJac3.chr1 111411593 118 - 210400635 I a score=4267241.000000 s hg38.chr9_GL383541v1_alt 94263 1176 + 171286 TCTTTCCCCTATAGAGGATAGGGCC-AAAAATGATGAGTTCAAAAGACTCTAAAATATTTTATTTGAAAAG--CTCTGCCCATAGGAC-TCAAAGATTTGATCCGTATCATTCTTT----------AAAACAAAACAAAATA--------AACCCTCCAATGCTCTAA---AAAGGAAAGAGGTTCCCTCTCTTATCATATTTGCTTTCTACCGCATATATTGATTTCCCC-GGAGTTCTATCAATTTGGGTGGCAAAGTAAAGATTAAATGGTTCAGATGTCTGCCCGCAACAGCAGATTTTGCTCTATGTGAGTTCATCTTGTGTTCATTCATATACCGGACGCAGCTTTTGCCTTTGCTTTCAGGTAAAAACTGGAGA----AACAGCACGTAGAAGGGAAGCTCATTGTCTACTTAGGAATTTCAGAACTGCAGAGAAGGTTGAGGGAAGTCTTCCCAGGAGAGTGCTAGTCTTTGTGTTGTAGAAAAGCAAAGAGTGAATGTAATTTCTGAAAACTACAATGT-GATATGAGTTTTCCTTCATTTCCTTGTATGTTCCTAACAATCTGCCCCAAACATTGAGTCAAGGTTTTT---AATGAGCATTGTTCCCCCAAATTAGTGTCTGATGATGGAAATGACTAAAATAATGTAGTAAGAATTGTGATAGGACATCTTTGGAATACTGGAGGGGATGTGATTTTTATCCTGTATTTT-----CTTAATTCTGATTCATCACATATGGGTTTCTTT--CTTTATTCATATTTTATGAAGTGAAACAAAATC-TTTCAGGAGGTAACCTACTGACAGCTCAGATCATTACTGTTTTCTACATACCTTAGCAAAAAAAAAAA----------AAAA--------GATGATTGCTGGAAAAATAATGAGGG--ATGCATCTCTTTGCTAAG---------A-TTTAAAAAACCAAGC---------------------------CTGCTTGTGGTGCTATTATGGAAGAAGCTGGACAAGGTTTCAAAATCTAAAATAAGGTTAGAGTTATTTAATTCCATCAAACATCATGAGATGGTTGGATCATCTCTCCATGACTCGTGACACTCTTTTCTCATTTCAGTTTGGAATGAG--CAAGAGTCATTTTAACAGGACTTATTTATTTACTCTCTGCATTGATCCATTTGGTGCGTGGTGTAAGTACTCGGTAGGGAAGCAGCTTTCTTAATTTTCTTACCATTTTCTTTGTGCAAGGTCTGCTGGATTTCCTTTCTC s panTro4.chr9 68659704 1176 + 137840987 TCTTTCCCCTATAGAAGATAGGGCC-AAAAATGATGAGTTCAAAAGACTCTAAAATATTTTATTTGAAAAG--CTCTGCCCATAGGAC-TCAAAGATTTGATCCATATCATTCTTT----------AAAACAAAACAAAATA--------AACCCTCCAATGCTCTAA---AAAGGAAAGAGGTTCCCTCTCTTATCATATTTGCTTTCTACCGCATATATTGATTTCCCC-GGAGTTCTATCAATTTGGGTGGCAAAGTAAAGATTAAATGGTTCAGATGTCTGCCCACAACAGCAGATTTTGCTCTATGTGAGTTCATCTTGTGTTCATTCATATACCGGACGCAGCTTTTGCCTTTGCTTTCAGGTAAAAACTGGAGA----AACAGCACGTAGAAGGGAAGCTCATTGTCTACTTAGGAATTTCAGAACTGCAGAGAAGGTTGAGGGAAGTCTTCCCAGGAGAGTGCTAGTCTTTGTGTTGTAGAAAAGCAAAGAGTGAATGTAATTTCTGAAAACTACAATGT-GATATGAGTTTTCCTTCATTTCCTTGTATGTTCCTAACAATCTGCCCCAAACATTGAGTCAAGGTTTTT---AATGAGCATTGTTCCCCCAAATTATTGTCTGATGATGGAAATGACTAAAATAATGCAGTAGGAATTGTGATGGGACATCTTTGGAATACTGGAGGGGATGTGATTTTTATCCTGTATTTT-----CTTAATTCTGATTCATCACATATGGGTTTCTTT------ATTCATATTTTATGAAGTGAAACAAAATC-TTTCAGGAGGTAACCTACTGACAGCTCAGATCATTACTGTTTTCTACATACCTTAGCAAAAAAAAAAA----------AAAAAAA----AGACGATTGCTGGAAAAATAATGAGGG--ATGCATCTCTTTGCTAAG---------A-TTTAAAAAACCAAGC---------------------------CTGCTTGTGGTGCTATTCTGGAAGAAGCTGGACAAGGTTTCAAAATCTAAAATAAGGTTAGAGGTATTTAATTCCATCAAACATCATGAGATGGTTGGATCATCTCTCCATGACTCGTGACACTCTTTTCTCATTTCAGTTTGGAATGAG--CAAGAGTCATTTTAACAGGACTTATTTATTTACTCTCTGCATTGATCCATTTGGTGCGTGGTGTAAGTACTCGGTAGGGAAGCAGCTTTCTTAATTTTCTTACCATTTTCTTTGTGCAAGGTCTGCTGGATTTCCTTTCTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64815623 1173 + 135191526 TCTTTCCCCTATAGAGGATAGGGCC-AAAAATGATGAGTTCAAAAGACTCTAAAATATTTTATTTGAAAAG--CTCTGCCCATAGGAC-TCAAAGATTTGATCCGTATCATTCTTT----------AAAACAAAACAAAATA--------AACCCTCCAATGCTCTAA---AAAGGAAAGAGGTTCCCTCTCTT---ATATTTGGTTTCTACCGCATATATTGATTTCCCT-GGAGCTCTATCAATTTGGGTGGCAAAGTAAAGATTAAATGGTTCAGATGTCTGCCCGCAACAGCAGATTTTGCTCTATGCGAGTTCATCTTGTGTTCATTCATATACTGGACGCAGCTTTTGCCTTTGCTTTCAGGTAAAAACTGGAAA----AACAGCACGTAGAAGGGAAGCGCATTGTCTCCTTAGGAATTTCAGAACTGCAGAG-AGGTTGAGGGAAGTCTTCCCAGGAGAGTGCTAGTCTTTGTGTTGTAGAAAAGCAAACAGTGAATGTAATTTCTGAAAACTACAATGTGGATATGAGTTTTCCTTCATTTCCTTGTATGTTTCTAACAATCTGCCCCAAACATTGAGTCAAGGTTTTT---AATGAGCATTGTTCCCCCAAATTATTGTCTGATGATGGAAATGACTAAAATAATGCAGTAAGAATTGTGGTGGGACATCTTTGGAATACTGGAGGAGATGTGATTTTTATCCTGTATTTC-----CTTAATTCTGATTCATCACGTATGGGTTTCTTT--CTTTACTCATATTTTATGAAGTGAAACAAAATC-TTTCAGGAGGTAACCTACTGACAGCTCAGATCATTACTGTTTTCTACATACCTTAGCAAAAAAAAAAA----------AA----------GATGATTGCTGGAAAAATAATGAGGGAAATGCATCTCTTTGCTAAG---------A-TTTAAAAAACCAAGC---------------------------CTGCTTGTGGTGCTACTCTGGAAGAAGCTGGACAAGGTTTCAAAATCTAAAATAAGGTTAGAGTTATTTAATTCCATCAAACATCATGAGATGGTTGGATCATCTCTCCATGACTCATGACACTCTTTTCTCATTTCAGTTTGGAATGAG--CAAGAGTCATCTTAACGGGACTTATTTATTTACTCTCTGCATTGATCCATTTGGTGCGTGGTGTAAGTACTCGGTAGGGAAGCAGCTTTCTTAATTTTCTTACCATTTTCTTTGTGCAAGGTCTGCTGGATTTCCTTTCTC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57851692 1190 - 122973662 TCTTTCCCCTATAGAGGATAGAGCT-AAAAATGATGAGTTCAAAAGATTCTAAAATATTTTATTTGAAAAG--CTCTGCCCATAGGAC-TCAAAGATTTGATCAGTATCATTCTTTaaaacaaaacaaaacaaaacaaaaca--------aaCCCTCCAATGCCCTAA---AAAGGAAAGAGATTCCCTCTCTTATCAAATTTGCTTTCTACTGCATGTATTGATTTCCCC-GGAGCTCTATCCATTTGGGTGGCAAAGTAAAGATTAAATTGTTCAGATGTCTGCCCGCAACAGCAGATTTTACTCTGTGTGAGTTCATCTTGTGTTCGTTCATATACCGGACACAGCTTTTGCCTTTGCTTTCAGGTAAAAACTGGAGA----AACAGCACATAGAAGGGGAGCTCATTGTCTACTTAGGAATTTCAGAACTGCAGAGAGCGTTGAGGGAAGTCTTCCCAGGAGAGTGCTAGTCTTTGTGTTGTAGAAAAGCAAACAGTGAATGTAATTTCTGGAAGCTACAATGTTGATGTGAGTTTTCCTTCATTTCCTTGTATGTTCCTAACAATCTGCCCCAAACATTGAGTCAAGGTTTTT---AATGAGCATCGTTCCCCCAAATTATTGTCTAATGATGGAAATGACTAAAATAATGCAGTAAGAATTGTGGCAGGACATCTTTGGAATACTGGAGGGGATGTGATTTTTATCCTGTGTTTT-----CTTAATTCTGATTCATCACATATGGGTTTCTTT--CTTTATTCATATTTTGTGAAGTGAAACAAAATC-TTTCAGGAGGTAAGCTACTGACAGCTCAGATCATTACCATTTTCTACATACCTTAGCAAAAAAAAAAA----------ACAAA-------GTTGATTGCTGGAAAAATAATGAGGGAAATGCATCTCTTTGCTGAG---------A-TTTAAAAAACCTAGC---------------------------CTGCTTGTGGTGCTACTCTAGAAGAAGGTGGACAAGGTTTCAAAATCTAAAATAAGGTTAGAGTTATTTAATTCCGTCAAACATCATGAGATGGTTGGATCATCTTTCCATGACTCATGACACTCTTTTCTCATTTCGGTTTAGAATGAG--CAAGAGTCATCTTAATGGGACTTATTTATTTACTCTCTGCATTGATCCAtttggtgcacagtgtaagcactcggtagagaagcaggtttcttaattttcttaccattttctttgtgcaaggtctgctggatttcctttctc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79785269 1184 + 112192347 TCTTTCCCCTATAGAGGGTGGGGCT-AAAAATGATGAGTTCAAAAGATTCTAAAATACTTTATTTGAAAAG--CTCTGCCCATAGGAC-TCAAAGATTTGGTCAGTATCATTCTTT----------AAAACAAAGCAAAACA--------AACCCTCCAATGCTCTAA---AAAGGAAAGAGGTTGCCTCTCCT---ATATTTGCTTTCTACTGGGTATACTGATTTCCCT-GGAGCTCTATCAGTTTGGGTGGCAAAGTTAAGATTAAATGGTTCAGATGTCTGCCTGCAACAGCAGATTTTGCTCTATGTGAGTTCATCTTGTGTTCGTTCATATACTGGATGCAGCTTTTGCCTTTGCTTTCAGGTAAAAACTGGAGA----AACAGCATGTAGAAGGGGAGCTCATTGTCTACTTAAGAATTTCAGAACTGCAGAGAGGGTTGAGGGAAGTCTTCCCAGGAGAGTGCTAGTCTTTGGGTTGTAGAAAAGCAAACGGTGAATGTAATTTCTGAAAACTACAATGTGGATATGAGTTTTCCTTCATTTCCTTGTATGTTCCAAACAGTCTGCCCCAAACATTGAGTCAAGGTTTTT--AAATGAGCATCGTGCCCCCAAATTATTGTCTAATGATAGAAATGACTAAAATAATGCAGTAAGAATTGTGGTGGGACATCTTTGGAATACTGGAGGGGTTGTGATTTTTATACTGTGTTTT-----CTTAATTCTGACTCATCACATATGGGTTTCTTT--CTTTATTCATATTTCATGAAGTGAAACAAAATC-TTTCAGGAGGTAACCTACTGACAGCTCAGATCATTACTGTTTTCTACCTACCTTAGCGAAAAAAAAGA----------AAAAGAAAAATAGGTGACTGCCCGAAAAATAATGAGGGAAATGCATCTCTTTGCTGAT---------A-TTTAAAAAACCAAGC---------------------------CTGCTTGTTGTGTTGCTCTGGAAGAAGCTGGACAAGGTTTCAAAACCTAAAAAAAGGTTAGAGTTATTTTATTCCATCAAACATCACGAGATGGATGGATCATCTCTCCATGA-TCATGACACTCTTTACTCATTTCAGTTTGGAATGAG--CAAGGGTCGTCTTAACAGGACCTATTTATTTACTCTCTGCATTGATCCATTTGGTGCATGGTGGAAGCATGCGGTAGGGAAGCAGCTTTCTTAATTTACTTACCATTTTCTTTGTGCAAGGtctgctgaatttcctttctc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80865259 1184 + 112612857 TCTTTCCCCTATAGAGGGTGGGGCT-AAAAATGATGAGTTCAAAAGATTCTAAAATACTTTATTTGAAAAG--CTCTGCCCATAGGAC-TCAAAGATTTGGTCAGTATCATTCTTT----------AAAACAAAGCAAAACA--------AACCCTCCAATGCTCTAA---AAAGGAAAGAGGTTGCCTCTCCT---ATATTTGCTTTCTACTGGGTATACTGATTTCCCT-GGAGCTCTATCAGTTTGGGTGGCAAAGTTAAGATTAAATGGTTCAGATGTCTGCCTGCAACAGCAGATTTTGCTCTATGTGAGTTCATCTTGTGTTCGTTCATATACTGGATGCAGCTTTTGCCTTTGCTTTCAGGTAAAAACTGGAGA----AACAGCATGTAGAAGGGGAGCTCATTGTCTACTTAAGAATTTCAGAACTGCAGAGAGGGTTGAGGGAAGTCTTCCCAGGAGAGTGCTAGTCTTTGGGTTGTAGAAAAGCAAACAGTGAATGTAATTTCTGAAAACTACAATGTGGATGTGAGTTTTCCTTCATTTCCTTGTATGTTCCAAACAATCTGCCCCAAACATTGAGTCAAGGTTTTT--AAATGAGCATCGTGCCCCCAAATTATTGTCTAATGATAGAAATGACTAAAATAATGCAGTAAGAATTGTGGTGGGACATCTTTGGAATACTGGAGGGGTTGTGATTTTTATACTGTGTTTT-----CTTAATTCTGACTCATCACATATGGGTTTCTTT--CTTTATTCATATTTCATGAAGTGAAACAAAATC-TTTCAGGAGGTAACCTACTGACAGCTCAGATCATTACTGTTTTCTACCTACCTTAGCGAAAAAAAAGA----------AAAAGAAAAATAGGTGATTGCCGGAAAAATAATGAGGGAAATGCATCTCTTTGCTGAT---------A-TTTAAAAAACCAAGC---------------------------CTGCTTGTTGTGTTGCTCTGGAAGAAGCTGGACAAGGTTTCAAAACCTAAAAAAAGGTTAGAGTTATTTTATTCCATCAAACATCACGAGATGGATGGATCATCTCTCCATGA-TCATGACACTCTTTACTCATTTCAGTTTGGAATGAG--CAAGGGTCGTCTTAACAGGACCTATTTATTTACTCTCTGCATTGATCCATTTGGTGCATGGTGGAAGCATGCGGTAGGGAAGCAGCTTTCTTAATTTACTTACCATTTTCTTTGTGCAAGGTCTGCTGAATTTCCTTTCTC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76914272 1181 + 107442819 TCTTTCCCCTACAGAGGGTGGGGct-aaaaatgatgagttcaaaAGATTCTAAAATACTTTATTTGAAAAG--CTCTGCCCATAGGAC-TCAAAGATTTGGTCAGTATCattcttt----------aaaacaaagcaaaaca--------aaccctCCAATGctctaa---aaaggaaagaggttgccTCTCTT---ATATTTGCTTTCTACTGGGTATACTGATTTCCCT-GGAGCTCTATCAATTTGGGTGGCAAAGTTAAGATTAAATGGTTCATATGTCTGCCTGCAACAGCAGATTTTGCTCTATGTGAGTTCATCTTGTGTTCGTTCATATACTAGATGCAGTTTTTGCCTTTGctttcaggtaaaaactggaga----aacaGCATGTAGAAGGGGAGCTCATTGTCTACTT-AGGATTTCAGAACTGCAGAGAGGGTTGAGGGAAGTCTTCCCAGGAGAGTGCTAGTCTTTGGGTTGTAGAAAAGCAAACAGTGAATGTAATTTCTGAAAACTACAGTGTGGATAtgagttttccttcatttccttgtATGTTCCAAACAATCTGCCCCAAACATTGAGTCAAGGTTTTT--AAATGAGCATCGTGCCCCCAAATTATTGTCTAATGATAGAAATGACTAAAATAATGCAGTAAGAATTGTGGTGGGACATCTTTGGAATACTGGAGGGGATGTGATTTTTATACTGTGTTTT-----CTTAATTCTGACTCATCACATAtgggtttcttt--ctttattcatatttcaTGAAGTGAAACAAACTC-TTTCAGGAGGTAACCTACTGACAGCTCAGATCATTACTGTTTTCTACCTACCTTagcgaaaaaaaaga----------aaaagaaaaataggtgaTTGCCGGAAAAATAATGAGGGAAATGCATCTCTTTGCTGAG---------A-TTTAAAAAACCAAGC---------------------------TTGCTTGTTGTGTTGCTCTGGAAGAAGCTGGACAAGGTTTCAAAACCTAAAATAAGGTTAGAGTTATTTTATTCCATCAAACATCACGAGATGGATGGATCATCTCTCCATGA-TCATGACACTC--TACTCATTTCAGTTTGGAATGAG--CAAGGGTCGTCTTAACAGGACCTATTTATTTACTCTCTGCATTGATCCATTTGGTGCATGGTGGAAGCACGCGGTAGGGAAGCAGCTTTCTTAATTTACTTACCATTTTCTTTGTGCAAGGTCTGCTGAATTTCCTTTCTC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81178034 1192 + 108555830 TCTTTTCCCTATAGAGGATGGGGCT-AAAAATGATGAGTTCAAAAGATTCTAAAATACTTTATTTGAAAAG--CTCTGCCCGTATGAC-TCAAAGATTTGGTCAGTATCATTCTTT----------AAAACAAAGCAAAACA--------AACCCTTCAATGCTCTAA---AAAGGAAAGAGGTTGCCTCTCTT---ATATTTGCTTTCTACTGGGTATACTGATTTCCCT-GGAGCTCTGTCAATTTGGGTGGCAAAGTTAAGATTAAATGGTTCAGATGTCTGCCTGCAACAGCAGATTTTGCTCTATGTGAGTTCATCTTGTGTTCATTCATATACTGGATGCAGCTTTTGCCTTTGCTTTCAGGTAAAAACTGGAGA----AACAGCATGTAGAAGCGGAGCTCATTGTCTACTTCAGAATTTCAGAACTGCAGAGAGGGTTGAGGGAAGTCTTCCCAGGAGAGTGCTAGTCTTTGGGTTGTAGAAAAGCAAACAGTGAATGTAATTTCTGAAAACTACAGTGTGGGTATGAGTTTTCCTTCATTTCCTTGTATGTTCCAAACAATCTGCCCCAAACATTGAGTCAAGGTTTTT--AAATGAGCATTGTGCCCCCAAATTATTGTCTAATGATAGAAATGACTAAAATAATGCAGTAAGAATTGTGGTGGGACATCTTTGGAATACTGGAGGGGATGTGATTTTTATACTGTGTTTT-----CTTAATTCTGACTCATCACATATGGGTTTGTTT--CTTTACTCATATTTCATGAAGTGAAACAAAATC-TTTCAGGAGGTA--CTACTGACAGCTCAGATCATTACTGTTTTCTACCTACCTTAGCaaaaaaaaaaaaaagaaaaagaaaagaaaaaTAGATGATGGCCGGAAAAATAATGAGGGAAATGCATCTCTTTGCTGAG---------A-TTTAAAAAACCAAGC---------------------------TTGCTTGTTGTGTTGCTCTGGAAGAAGCTGGACAAGGTTTCAAAATCTAAAATAAGGTTAGAGTTATTTTATTCCATCAAACGTCACGAGATGGATGGATCATCTCTCCATGA-TCATGACACTCTTTACTCATTTCAGTTTGGAATGAG--CAAGGGTCATCTTAACAGGACCTATTTATTTACTCTCTGCATTGATCCATTTGGTGCATGGTGTAAGCACACGGTAGGGAAGCAGCTTtcttaattttcttaccattttctttgggcaaggtctgctgaatttcctttctc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111411711 1167 - 210400635 TCTTTCCCCTATAGAGGATAAGGCTAAAAAATGATGAGTTCAAAAGATTCTAAAATATTCCATTTGAAAAG--TTCTGCCCATAGGAC-TCAAAGATTTGATCAGTATCATTCTTT----------AAAA-----CAAAACA--------AATTCTCAAATACTCTAA---AAAGGAAAGAGGTTGCCTCTCTTACTATATTTGCTTTCTACTGGGTATTTTTATTTGCCC-AGAGCTCTATCAAATTGGGTGGCAAAGTCAAGATTAAATGGTTCAGATGTCTGCCTGCAACAGCAGATTTTGCTCTATGTGAGTTCGTCTTGTGTTCATTCATATACTGGACGCAGCTTTAGCCTTTG-TTTCAGGCAAAAACTGGAGC----AACAGCAGGTGGAAGGGGAATTAATTGCCTACTTAGGAATTTCAGAACTGCAGAGAGGGTTGAGAGAAGTCTTCCCAGGAGAGTGCTTGTCTCTGTGTTGCAGAAAAGGAAACGGTGAATGTAATTTCTGAAAACCACAATGTGGGTATGAGTTTTCCTTCATTTCTTTGTATGTTCCTAACAATCCATCCCAAACACTGAGTCAAGGTTTTT--AAATGAGGATTGTGCCCCCAAATTCTTGTCTCATGATGGAAATGATTAAAATAATGCAGTAAGAATTGTGGTGGGACATCTTTGGAATACTGGAGGGTATGTAATTTTTATTCAGTGTTTT-----CTTAATTCTGATTCATCACATATGGGTTTCTTT--CTTTATTCATATTTTTTGAAGTGAAACAAAATC-TTTCAGGAGGTAACCTACTCACAGCTCAGATCATTACTGTTTTTTACGTACCTTAGCAAAAAA---------------------------GATGTTTGCTGGAAAAATAATGAGGGAAATGCATTTCTTTGCTGAG---------ATTTTAAAAAAATAAGC---------------------------CTGCTTGTGGAACTACTCTGGAAGAAGTTGGACAAAGTTTTGAAATCTGAAATAAGGTTAGAGTTATTTTATTCCCTCAAACATCATGAGGTGGATGGACCATTTCTCCATGACTCATGACACTCTTTTCTCATTTCGGTTTGGAATGAG--CAAGGGTCATCTTAAGAGGACTCATTTATTTACTCCCTGCATTGATCCATTTGGTGCATTGTGTAAGCACTCAGTAGGGAAGCAGCTTTCTTAATTTTCTTACTATTTTCTTTGTGCAAGGTCTGCTTGATTTCCTTTCTC i calJac3.chr1 I 118 C 0 s mm10.chr19 38059398 1096 - 61431566 TCACCCTATTACTTAAATTGAAGCA-TAAAAAGATGAGCTCTAAAGATTCTAAAATA-TTTATCTAAGGAG--TTCCGCCCACACGATACCAAAGGTTTGCCCAGTGTGACTCTTG----------CAGA------AAAAGA--------AAACTACCAACACTCTAA---AGAAGATAGAAATTGCCTCTCTTATTTCATTTGCCTTGTATTGGATATATTGATTTTTCTCTGCACTCTATCAATTTGGGTGGCAAAGGAAAGATTAAATGATCCAGATGTCTGCCTGCAGCAGCAGATTTTGCTCTCTGTGGACTCATCTCATGTTTGTTCATATACTGGAAGCAACTTAGGCCTTTGCTTTT-GCTAAGAAGCAGAGA----CTCA--------------------------------------CACAGCTGAGATCAAGGGTGCCGAACACATTCCTGG----------GTCTTTGTG-TGTAGAAAGG-GAATGGTGAATATGTCATCTGCAAAATTCGGTGTTGTTATCAGACTTCTTTCATTAACTTGTATGTTTCTAACAGTTTTTCCCAGGCA--GAGCTCTGGTTTTTTCCAATG---GTGCTGTCCCCAACATCTTGTTAAATGATAGAA------CAGATACTGCACGAGGAATTATGA---GATTTCCTTGAGATATGGAAGGGGACATGATTTTT---------------------------------------TAACTTTTCTT--CTTTGTTGATATTTTACGAAGCAAAACAAAATCATTTCAGGAGGTAGGTTGCTGACAGCACAGATCAGTACCGTTGGC-----ACCTTGGCAAGAAGGGAGG------------------------TAATTGATGGAAAAATAATGAGGAGAATTCATTATTTTCCTGAGGCTTGAGGTA-TTAAAaaaacaaaacaaaacaaaacaaaaAACAAAAAGCAAGCTGCTCAGAATCCCACTCTGCAGGGAGCTGGACAAAGATTCAAAATCTAAAGTCAGATTAGAATGATTTTATTCTCCTAAAGCCCATGAGATGGATGAATCAGCTCTCCACAG-TCAGGCCATT--TTTCTCACTTGGGTTGGGATGAAG--TTTGAG---TGTCATCAGAACCTACTCATT--CTCTCTGCATCAACCTGCTCAGGTCGTGGCACTGGCGCCCAGTGGGAGTGTGGCTTTGTTAATTTCCTCAGCATTGCCTGCACACATAGTCTGCTGAATAAacacacac i mm10.chr19 I 1 I 26 s canFam3.chr1 35301277 1173 - 122678785 ACTTCTTCCTATATACAGTGAGGCT-AAAACAGATGAGTTCTAAAGATTCTCTGATATTTTCCTTGAAAAGCTCTCTGCCCATAGGAC-TCAGAGTTTTGGCCAGAATCACTATTGGG--------AGAACaaaaaataataataataataaCCTTCCAGTGCTCTAAATTAAGAGAGGGGGGTTGCCTTTCTAAGTACATTTGCCATCTACTGGATGTATTGATTTTTCC-TGAGCTCTATCAATTTGGGTGGCAAAGTAAAGATTAAATGGTTCAGGTATCTGCCCACAGCAGCAGATTTTGCTCAA--AAAACTCATCTCATGTTCATTCATTTACTGGAAGCAGCTTATGC------TTTCAGAGAAAAACCAGAGAAGTGAACAATGGGGGCAAGCGAAGCTGTGTGTCCGCTTAGACACTTC-------CAG---GGGTTGAGGGACACCTTC--AGGAGGGCTCTGGCCTTTGTGTTGTAGAAGAAAGGAGAGTGAATGTGGTATCTGAAAAATGTGACACATATATGAGTTTTCC-TCATTTGACCATGCATTTTTAACA----GCCCCAAACCGTGAGTCCGATCTTTC--AAATGGGCACTTGGTCTCCGAATGTCTGTCTCAGGGTGGAAATGGCTAAAATAATGCAGTCAGAACTCTCTTGAGACATCTTGGGAATGTTGGAGGGGATGGGA-TATTATCCTGCTTTTTTGTCATTCAATTCCGATTCATCATGAATGGATTTTTTTTTCTTTGTTAATATTTTATGAAGTGAAACGAAATC-TTTCAGGAGGTAGCCTATTGGTAGCTCAGATCATTACTGTTTCCTACCTGCCTTGGCAAAAAAAGAAG-----------------------GTAATTACTGGGCAAATAATGAGGGAAATCTGTTTCTTTGCTGAG---------A-TTTTAAAAATCATAT---------------------------GCACGTAGGGTGCCACCCTG---AGAGCTGAGCAAGGTTTCAAAACCTAAATTAAGGTCAGAGTGATTTTATTCCCTCCAAGATCCTGAGATGGATGGAGCATCTTTCTATAATTCATGGCCACCTTTTCTCCTTTCAGTTCAGACAGAGCTCAGGCATCCTCTTAACAGTGC-TATGCATTTACTCTCTGCATTGATCCACTTGGTTCCTTGCATACGCTCTCAGCGGGGAAGCAGTTTTATTAATTTTCTCACCGTTACCTTTACACAGGCTCTGCTCGTTCACCTTTCCC i canFam3.chr1 C 0 C 0 a score=42963.000000 s hg38.chr9_GL383541v1_alt 95439 12 + 171286 TGCCCTTGGATG s panTro4.chr9 68660880 12 + 137840987 TGCCCTTGGATG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64816796 12 + 135191526 TGCCCTTGGATG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57852882 12 - 122973662 tgcccttgaatg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79786453 12 + 112192347 tacccttggatg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80866443 12 + 112612857 TACCCTTGGATG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76915453 12 + 107442819 TACCCTTGGATG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81179226 12 + 108555830 tacccttggatg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111412878 12 - 210400635 TGCCCTCAGATA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35302450 12 - 122678785 TGTCCTTGGATG i canFam3.chr1 C 0 C 0 e mm10.chr19 38060494 26 - 61431566 I a score=1153515.000000 s hg38.chr9_GL383541v1_alt 95451 343 + 171286 ACTTACTGTGGCTTTCCAGTTACTTTCAGGTATTAATAAACACCTTCATTTTCAAGGATTAGATGCAGTCAAGTCACAACTGC--AATGTCTCATCTAGTTCAGATCTTCCCAGAGACTGGGCCACACAACAG---CAGTAGAGAGAAAGGTTTGTGCTTTGT-CTCTTCATA---CTTCACCTTTTTCTTCCCTACTTCT---CCCTCTTACTGTACTGCTTCTGGCTGCTTCAGAGTTGGGAGGCAATGGGCAGGGT-------------GGGGAT-GGAACAGAAAGGCAAAGGCTAGGGACAAAAGGTTTCACTTGCCTCTTGCTATTTAATCTAGAGTTGATGACCTTCATACAGCACATGGCC s panTro4.chr9 68660892 346 + 137840987 ACTTACTGTGGCTTTCCAGTTACTTTCAGGTATTAATAAACACCTTCATTTTCAAGGATTAGATGCAGTCAAGTCACAACTGC--AATGTCTCATCTAGTTCAGATCTTCCCAGAGACTGGGCCACACAACAG---CAGTAGAGAGAAAGGTTTGTGCTTTGT-CTCTTCATA---CTTCACCTTTTTCTTCCCTACTTCTTCTCCCTCTTACTGTACTGCTTCTGGCTGCTTCAGAGTTGGGAGGCAATGGGCAGGGT-------------GGGGAT-GGAACAGAAAGGCAAAGGCTAGGGACAAAAGGTTTCACTTGCCTCTTGCTATTTAATCTAGAGTTGATGACCTTCATACAGCACATGGCC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64816808 346 + 135191526 ACTTACTGTGGCTTTCCAGTTACTTTCAGGTATTAATAAACACCTTCATTTTCAAGGATTAGATTCAGTCAAGTCACAACTGC--AATGTCTCATCTGGTTCAGATCTTCCCACAGACTGGGCCACACAACAG---CAGTAGAGAGAAAGGTTTGTGCTTTGT-CTCATCATA---CTTCACCTTTTTCTTCCCTACTTCTTCTCCCTCTTACTGTACTGCTTCTGGCTGCTTCATAGTTGGGAGGCAATGGGCAGGGT-------------GGAGAT-GGAACAGAAAGGCAAAGACCAGGGACAAAAGGTTTCACTTGCTTGTTGCTATTTAATCTAGAGTTGATGACCTTCATACAGCACATGGCC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57852894 346 - 122973662 acttactgtggctttccagttactttcagctattaacaaacactttcattttcaaggattaggttcagtcaagtcacaactgc--aatgtctcatctagtttagatcttcccacagactgggccacacaacag---cagtagagagaaaggtttgtgctttgt-ctcttcata---cttcacctttttcttccttacctcttctccctcttactgtactgcttctggctgcttcagagttgggaggcaatgggcagggt-------------ggggat-ggaacagaaaggcaaaggccagggacaaaaggtttcacttgcctgttgctatttaacctagagttgatgcccttcatacagcacatggcc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79786465 341 + 112192347 acttgctgtggctttccagttactttcaggtattaataaacatcttcactttcaaggattaggttcagtcaagtcacaactgc--aatgtctcatttagtttagatcttcccacagactgggccacacaacag---ctgtagagagaaaggtttgtgctttgt-ctcttcata---cttcacctttttcttccctacctcttctccctcttactg----gcttctggctgcttcagggttgggaggcaataggcggggt-------------ggggat-ggaacagaaaggcaaaggccagggacaaaa-ctttcacttgactgttgctatttaatctagaggtgatgcccttcatacagcacatggcc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80866455 341 + 112612857 ACTTGCTGTGGCTTTCCAGTTACTTTCAGGTATTAATAAACATCTTCACTTTCAAGGATGAGGTTCAGTCAAGTCACAACTGC--AATGTCTCATTTAGTTTAGATCTTCCCACAGACTGGGCCACACAACAG---CTGTAGAGAGAAAGGTTTGTGCTTTGT-CTCTTCATA---cttcacctttttcttccctacctcttctccctcttactg----gcttctggctgcttcagggttgggaggcaataggtggggt-------------ggggat-ggaacagaaaggcaaaggccagggacaaaa-ctttcacttgactgttgctatttAATCTAGAGGTGATGCCCTTCATACAGCACATGGCC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76915465 341 + 107442819 ACTTGCTATGGCTTTCCAGTTACTTTCAGGTATTAATAAACATCTTCACTTTCAAGGATTAGGTTCAGTCAAGTCACAACTGC--AATGTCTCATTTAGTTTAGATCTTCCCACAGACTGGGCCACACAACAG---CTGTAGAGAGAAAGGTTTGTGCTTTGT-CTCTTCATA---CTTCACCTTTTTCTTCCCTACCTCTTCTCCCTCTTACTG----GCTTCTGGCTGCTTCAGGGTTGGGAGGCAATAGGCAGGGT-------------GGGGAT-GGAACAGAAAGGCAAAGGCCAGGGACAAAA-GTTTCACTTGACTGTTGCTATTTAATCTAGAGGTGATGCCCTTCATACAGCACATGGCC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81179238 341 + 108555830 acttgctgtggctttccagttactttcaggtattaagaaacatcttcactttcaaggattaggttcagtcaagtcacaactgt--gatgtctcatctagtttagatcttcccacagactgggccacacaacag---ctgtagagagaaaggtttgtactttgt-ctcttcata---cttcacctttttcttccctacctcttctccctcttactg----gcttctggctgcttcagggctgggaggcaataggcggggt-------------ggggac-ggaacagaaaggcaaaggccagggacaaaa-gtttcacttgactgttgctattTAATCTAGAGGTGATGCCCTTCATACAGCACATGGCC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111412890 330 - 210400635 AC--AGTATGGCTTTCCAGTTACTTTCGGGTATTAGCAAACACCTTCATGTTCAAGGATT-----------------------------TCTCATCTAGTTCAGCTCCTCCCCAAGACTGAGCCACACAAT-G---CAGTAGAGAGAAAGTTTTGTGCTTTTTACTCTTCACA---cttcacctttttcttcccttcctcttctccctctaactgtactgcttctggctgcttcagggttgggaggcaatgggcaaggggtggaaggttgtaggggaa-ggaacagaaaagCAAAGGCCAGGGACAAAAGGTTTCACTTGCCTGTTGCTATTGCATCTAGAGTTGATTGCCTTCATACAGCACATGGCC i calJac3.chr1 C 0 C 0 s mm10.chr19 38060520 335 - 61431566 acacacCATGTATTCCTAGTCATCTTCACAGATC----AACAGCCTCATTTCCAAGGATTAAGTGCAGCCAGGGCACAACTCCCACATTTCTCATGGGATGCAGATCTTCTCTCAGGCTCTTCCACAGAGCAGCGACAGCAGGGAGA------TATGCTTCAT-CTCTTCCTGTCTCTTTACTTTTCTCTTCTTTGGCTTTTC-CCCACTCCTTGTACCGC-TCTGGCTTCTTTGATGTT------CTGGAGGCATAGT-------------GGGGTTCAGAGCATAAAAG-AAGGACAATGGACACGAAGCTTTACCTGACTGGTGTTGGTTAATCTTAGGTTGATGTCCTTAA-ACTGGAAATGGTA i mm10.chr19 I 26 C 0 s canFam3.chr1 35302462 335 - 122678785 ACTTACCTTATCTTTCTGGACACTTTGAAGTATGAACTAATAGCCTCCTTCTCAAGGGTTTGGTTCAGCCCTGTCAAAACTCC--AGCATCTCATTCGATTCAAATGTCCCCCCAGACTAAAACACGGTAGAG---CCATAGAGAGAAAGCCATTGGCCTTTT-TTCTTCATA---cttc-ttttgcttttcccttcatgttctcctactcactctgctgcttctggctcctccagggtagg--------aggagttgt-------------gacagt-ggaacagaaaaggaagggatggggacaacagattttatgtgaccagtcctatggaagctggagtt--tggcctttatactgcatgtggtc i canFam3.chr1 C 0 C 0 a score=518766.000000 s hg38.chr9_GL383541v1_alt 95794 167 + 171286 AAATTCTGGCATTCCTGTCATGGCCAATGGGGGATCCCACTTTAGTGTTGACAGACAGGGATGAGCAACTCTCTGGCTGACCATCTGTGAATCCTGCTTAGCTCATATAAGTCACGGTATGCCCTACCAGCTCCCTTCTAATGGAATTACC----------------GCACTGGTAGGCAGTT s panTro4.chr9 68661238 167 + 137840987 AAATTCTGGCATTCCTGTCATGGCCAATGGGGGATCCCACTTTAGTGTTGACAGACAGGGATGAGCAACTCTCTGGCTGACCATCTGTGAATCCTGCTTAGCTCATATAAGTCACGGTATGCCCTACCAGCTCCCTTCTAATGGAATTACC----------------GCACTGGTAGGCAGTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64817154 167 + 135191526 AAATTCTGGCATTCCTGTCATGGCCGATGGGAGATCCCACTTTAGTGTTGCCAGACAGGGATGAGCAACTCTCTGGCTGACCATCTGTGAATTCTGCTTAGCTCATATAAGTCATGGTATGCCCCACCAGCTCCCTTCTAATGGAATTACC----------------GCACTGGTAGGCAGTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57853240 183 - 122973662 aaattctggcattcctgtcttggccgatgggggatcccactttagtgttgccagacagggatgagcaactctctggctgaccatctgtgaatcctgcttagctcctacaagtcatggtatgcctcaccagctcccttctaatggaattacccttctaatgaattactgcactggcaggcagtt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79786806 167 + 112192347 aaattctggcattcctgtcatggccaatgggggatcccactttagtgttgccagacagggttgagcaactctctggctgaccatctatgaatccttcttagctcctataagtcatggtatgccccaacagctcccttctaatggaattacc----------------gcactggcaggcagtt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80866796 167 + 112612857 AAATTCTGGCATTCCTGTCATGGCCAAGGGGGGATCCCACTTTAGTGTTGCCAGACAGGGTTGAGCAACTCTCTGGCTGACCATCTATGAATCCTTCTTAGCTCCTATAAGTCATGGTATGCCCCACCAGCTCCCTTCTAATGGAATTACC----------------GCACTGGCAGGCAGTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76915806 167 + 107442819 AAATTCTGGCATTCCTGTCATGGCCAATGGGGGATCCCACTTTAGTGTTGCCAGACAGGGATGAGCAACTCTCTGGCTGACCATCTATGAATCCTTCTTAGCTCCTATAAGTCATGGTATGCCCCACCAGCTCCCTTCTAATGGAATTACC----------------GCACTGGCAGGTAGTA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81179579 167 + 108555830 AAATTCTGGCATTCCTGTCATGGCCAATGGGGGATCCCACTTTAGTGTTGCCAGTCAGAGATGAGCAACTCTCTGGCTGACCATCTATGAATCCTTCTTAGCTCCTATAAGTCATGGTATGCCCCACCAGCTCCCTTCTAATGGAACTACT----------------GCACTGGCAGGCAGTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111413220 166 - 210400635 AAATTCTGGCATTCTTGTCATGGCCAACGGGGGATCCCACTTTAGTGCTGGCAGACGGGGATGAGcagctgtctggctgaccacctgtgaatcctgcttagttcctataaataacggcacaccc-gccagctcccttctaatggaattact----------------gcactggcaggcagtt i calJac3.chr1 C 0 C 0 s mm10.chr19 38060855 153 - 61431566 AAGTC----TACTTCTCCCATGGCTGATGAGAT-TTGCACTCTACAGTTCCAAGAAAGAAATGATGCTCTTTCTGGCTGATCTTCTCTGAACCTCTACCAGCTTTTAGGGGTAATGG---ACTCATCTAGAACTTCTCTACCGCTCTTACC----------------ATGCAAATAG------ i mm10.chr19 C 0 C 0 e canFam3.chr1 35302797 0 - 122678785 C a score=779251.000000 s hg38.chr9_GL383541v1_alt 95961 232 + 171286 CTCTTGAGAAGAGTCCTTTTAAGGTACTGTAGCCCAGCTGCCTT---------CTAAAT-----TGCCCCCTCAAACTCTGGAA---------------------------------GTGCATTTCACTGGCAACAAACTCCTTTTTCTCTACTCTTCCCCTACGGGTCCCTATAGTCAGTTTTTTGCCTTTAGATGTATGCA--CCAGTGCCAGGCTCC-ATC-TCTGCATCACACACACACACTCCAG-TATCACTGATCAACCTTTTTCAAGAACTCTGAT s panTro4.chr9 68661405 232 + 137840987 CTCTTGAGAAGAGTCCTTTTAAGGTACTGTAGCCCAGCTGCCTT---------CTAAAT-----TGCCCCTTCAAACTCTGGAA---------------------------------GTGCATTTCACTGGCAACAAACTCCTTTTTCTCTACTCTTCCCCTACGGGTCCCTATAGTCAGTTTTTTGCCTTTAGATGTATGCA--CCAGTGCCAGGCTCC-ATC-TCTGCATCACACACACACACTCCAG-TATCACTGATCAAGCTTTTTCAAGAACTCTGAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64817321 230 + 135191526 CTCTTGAGAAGAGTCCTTTTAAGGTTGTGTAGCCCAGCTGCCTT---------CTAAAT-----TGCCCCCTCAAACTCTGGAA---------------------------------GTGCATTTCACTGGCAACAAACTCCTTTTTCTCTACTCTTCCCCTACAGGTCCCTATAGTCAGTTTCTTGCCTTTAGATGTATGCA--CCAGTGCCAGGCTCC-ATC-TCTGCAT--CGCACACACACTCCGG-TATCACTGATCAAGCTTTTTCAATAACTCTGAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57853423 230 - 122973662 ctcttgagaagagtccttttaagatactgtagcccagctgcctt---------cTAAAT-----TGCCCCCTCAAACTCTGGAA---------------------------------GTGCATTTCACTGGCAACAAACTCCTTTTTCTCCACTCTTTCCCCACAGGTCCCTATAGTCAGTTTCTTGCCTGTAGATGTATGCA--CCAGTGCCAGGCTCC-ATC-TCTGCAT--CACACACACACTCCAG-TATCACTGATCAAGCTTTCTCAAGAACTCCGAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79786973 229 + 112192347 ctcttgagaagagttcttttaaggtagtgtagcccagctgcctt---------cTAAAT-----TGCCCCCTCAAACTCTGGAA---------------------------------GTGCAGTTCACCGGCAGCAAACTCCTTTTTCTCTACTCTTCCCCCACAGGTCCCTAGGGTCAGCTTCTTGCCTTTAGAGGTATGCA--CCAGTGCCAGGCTCC-ATC-TTTGCAT--CACAC-CACACTCCAG-TATCACTGGTCAAGCTTTCTTAAGAACTCTGAC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80866963 229 + 112612857 CTCTTGAGAAGAGTTCTTTTAAGGTAGTGTAGCCCAGCTGCCTT---------CTAAAT-----TGCCCCCTCAAACTCTGGAA---------------------------------GTGCAGTTCACCGGCAGCAAACTCCTTTTTCTCTACTCTTCCCCCACAGGTCCCTAGGGTCAGCTTCTTGCCTTTAGAGGTATGCA--CCAGTGCCAGGCTCC-ATC-TCTGCAT--CACAC-CACACTCCAG-TATCACTGGTCAAGCTTTCTTAAGAACTCTGAC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76915973 229 + 107442819 CTCTTGAGAAGAGTTCTTTTAAGGTAGTGTAGCCCAGCTGCCTT---------CTAAAT-----TGCCCCCTCAAACTCTGGAA---------------------------------GTGCAGTTCACCGGCAGCAAACTCCTTTTTCTCCACTCTTCCCCCACAGGTCCCTAGGGTCAGCTTCTTGCCTTTAGAGGTATGCA--CCAGTGCCAGGCTCC-ATC-TCTGCAT--CACAC-CACACTCCAG-TATCACTGGTCAAGCTTTCTTAAGAACTCTGAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81179746 228 + 108555830 CTCTTGAGAAGAGTTCTTTTAAGGTACTGTAGCCCAGCTGCCTT---------CTAAAT-----TGCCCCCTCAAACTCTGGAA---------------------------------GTGCAGTTCACTGGCAGCAAACTCCTTTTTCTCCACTCTTCCCCCACAGGTCCCTAGGGTCAGCTTCTTGCCTTTAGAGGTATGCA--CCAGTGCCAGGCTCC-ATT-TCCGCAT--CACA--CACACTCCAG-TATCACTGATCAAGCTTTCTTAAGAACTCTGAC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111413386 225 - 210400635 ctcttgagaagggtccatttaaggtgctgtagcccggctgcctt---------cTAACT-----TGCCCCCTCAAACTCTGGAA---------------------------------GTGCAGTTCACCAGCAACAAACTCC---TTCTCCACTCTTCCACCACAGGTCCCTACAGTCTGCTTCTTGCCTTTAGATGTATGCA--CCAGTGCCAGGCTCC-ATC-TCTGCAC--CACA--CACACTCTAA-TATCACTGATCAACTTTACTCAAGAACTCTGAC i calJac3.chr1 C 0 C 0 s mm10.chr19 38061008 221 - 61431566 -TCTTAAGAGGA-TTTTTCTGAAGTGCAGTAGCCCGCTTAGGCCAAGAGAAAACTCAATGTCTCTGCTCCATCAAACTCTGGAA---------------------------------A-----GTCATTGGCAACAAACTTTGTCCTCTCGGCTCTGTCT---------------ATCAGATTCTTTCCTCTCCCTGTGTGCA--AGGAAGGCAAGCACCTCTC-TCTGTAC--TCTA--CACACTTGCT-TTTCACTGATCATGTTCTCTCTAGAACTCTAAT i mm10.chr19 C 0 I 1922 s canFam3.chr1 35302797 262 - 122678785 cttttgagaaaagtcctttcaagacattctagcctacctacctt---------ctgagc-----tggccacttaggctaaggaaaatctcaaatctttgcccatgccaaactgggaggtacagctcactggcaacggaatcctttctctccattctaccCCCA-GGGTCCCTACGGACG---TCTTTTCTCTAGATGTATATGGTCAAGAGTCAGGAACT-GCCTTCTGTGC--CCCCA-CAAACCCCAGTTATCACTGATCAAGTTCTCCCGAGAACTCTGAG i canFam3.chr1 C 0 C 0 a score=1422634.000000 s hg38.chr9_GL383541v1_alt 96193 432 + 171286 TACTTTCATCTCAAGGTCCAGAGCAACTGCAGAGCTCAGAAATTTCTGCTCAAAAGGGAggggatgaggttacatggcagtttccttc---------ctctacctcttccatgagtggttcgcttaagccccc-tcctttagatcaaggtaagaaaagggaagcaatccccttgccttccctggagaggtcaaaaggaaacacatagcagggcagctctaacccaa--ctctttatagaaaccccatctccaatctctctgattcatctcgagccttctcatatgcacaggctacaagggagagatgggctaacacttgtagagctggggtaggtgccagg--ggctgccacttaacatatt-------gacagtctagcaccactctttagaaaatagaggttgttgtcacttattgtttggggctttgaggtcttagcacaga-taggagaa s panTro4.chr9 68661637 432 + 137840987 CACCTTCATCTCAAGGTCCAGAGCAACTGCAGAGCTCAGAAATTTCTGCTCAAAAGGGAggggatgaggttacatggcagtttccttc---------ctctacctcttccatgagtggttcgcttaagccccc-tcctttagatcaaggtaagaaaagggaagcaatccccttgccttccctggagaggtcaaaaggaaacacatagcagggcagctctaacccaa--ctctttatagaaaccccatctccaatctctctgattcatctcgagccttctcatatgcacaggctacaagggagagatgggctaacacttgtagagctggggtaggtgccagg--ggctgccacttagcatatt-------gacagtctagcaccactctttagaaaatagaggttgttgtcacttattgtttggggctttgaggtcttagcacaga-taggagaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64817551 433 + 135191526 CACCTTCATCTCAAGGTCCAGAGCAACTGCAGAGCTCAGAAATTTCTGCACATAGGGGAGGGGATGAGGTTACATGGCAGTTTCCTTC---------CTCTACCTCTTCCATGAGTGGTTCCCTTAAGCCCCCATCCTTTAGATGAAGGTAAGAAAAGGGAAGCAATCCCCTTGCCTTCCCTGGAGAGGTCAAAAGGAAATACATAGCAGGGCAGCTCTGTGACAACGCTCTTTATAGAAACCCCATCTCCAA--TCTCTGATTCATCTCGAGCCTTCTCATATGCACAGGCTAGAAGGGAGAGATGGGCTAACACTTATAGAGCTGGGGTAGGTGCCAGG--GGCTGCCACTTAGCATATT-------GACAGTCTAGCACCACTCTTTAGAAAATAGAGGTTGTTGTCACTTATTGTTTGGGGCTTTGAGGTCTTAGCACAAA-TAGGAGAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57853653 433 - 122973662 CACCTTCATCGCAAGGTCCAGAGCAATTGCAGAGCTCAGAAATTTCTGCACATAGGAGAGGGGATGAGGTTAAATGGCAGTTTCCTTC---------CTCTATCTCTTCCATGAGTGGTTCCCTTAAGCCCCT-TCCTTTAGATCAAGGTAAGAAAAGGGAAGCAATCCCCTTGCCTTCCCTGGTGAAGTCAAAAGGAAACACGTAGCAGGGCAGCTCCGTGACAACGCTCTTTATAG-AACCCCATCTCCAATATCTCTGATTCATCTCGAGCCTTCTCATATGCACAGGCTAGAAGGGAGAGATGGGCTAACACTGGTAGAGCTGGGGTAGGTGCCAGG--GGCTGCCACTTAGCATATT-------GACAGTCTAGCACCACTCTTTAGAAAATAGAGGCTGTTGTCACTTATTGTTTGGGGTTTTGAGGTCTTAGCACAGA-TAGGGGAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79787202 433 + 112192347 CCCCTTCATCTCAAGGTTCAGAGCAATTGCAGAGCTCAGAAATTTCTGCACATAGGGGAGGGGATGAGGTTagatggcagtttccttc---------ctctaccttttccatgagtggttcccttaaggcccc-tcctttaga-caaggtaagaaaggggaagcaattcctttgccttccctggagaggttgaaaggaaacacatagcagggcggttctgtgacaacgctctttatagaaaccccatctccaatctctctgattcatctcgagccttctcatatgcacaagctagaggggagagacgggctaacactggtagagccggggtaggtgccagg--ggttgccacttagcatatt-------gatggtctagcacctctctttagaaaatagaggttgtcgtcacttattgtttggggctttgaggtcttagcACAGA-TACAAGAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80867192 433 + 112612857 CCCCTTCATCTCAAGGTTCAGAGCAATTGCAGAGCTCAGAAATTTCTGCACATAGGGGAGGGGATGAGGTTAGATGGCAGTTTCCTTC---------CTCTACCTTTTCCATGAGTGGTTCCCTTAAGGCCCC-TCCTTTAGA-CAAGGTAAGAAAGGGGAAGCAATCCCCTTGCCTTCCCTGGAGAGGTTGAAAGGAAACACATAGCAGGGCGGTTCTGTGACAACGCTCTTTATAGAAACCCCATCTCCAATCTCTCTGATTCATCTCGAGCCTTCTCATATGCACAAGCTAGAGGGGACAGACGGGCTAACACTGGTAGAGCCGGGGTAGGTGCCAGG--GGTTGCCACTTAGCATATT-------GATGGTCTAGCACCTCTCTTTAGAAAATAGAGGTTGTCGTCACTTATTGTTTGGGGCTTTGAGGTCTTAGCACAGA-TACGAGAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76916202 433 + 107442819 CCCCTTCATCTCAAGGTTCAGAGCAATTGCAGAGCTCAGAAATTTCTGCACATAGGGGAAGGGATGAGGTTAGATGGCAGTTTCCTTC---------CTCTACCTCTTCCATGAGTGGTTCCCTTAAGGCCCC-TCCTTTAGA-CAAGTTAAGAAACGGGAAGCAATCCCCTTGCCTTCCCTGGAGAGGTCGAAAGGAAACACATAGCAGGGCGGTTCTGTGACAACGCTCTTtatagaaaccccatctccaatcTCTCTGATTCATCTCGAGCCTTCTCATATGCACAGGCTAGAGGGGAGAGACGGGCTAACACTGGTAGAGCCGGGGTAGGTGCCAGG--GGTTGCCACTTAGCATATT-------GACGGTCTAGCACCTCTCTTTAGAAAATGGAGGTTGTCGTCAATTATTGTTTCGGGCTTTGAGGTCTTAGCACAGA-TACGAGAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81179974 434 + 108555830 CCCCTTCATCTCAAGGTTCAGAGCAATTGCAGAGCTCAGAAATTTCTGCACATAGGGGAGGGGATGAGGTTAGATGGCAGTTTCCTTC---------CTCTACCTCTTCCATGAGTGGTTCCCTTAAGGCCCC-TCCTTTAGATCAAGGTAAGAAAGGGGAAGCAATCCCCTTGCCTTCCCTGGAGGGGTCAAAAGGAAACACATAGCAGGGCGGTTCTGTGACAACGCTCTTTATAGAAACCCCATCTCCAATCTCTCTGATTCATCTCGAGCCTTCTCATATGCACAGGCTAGAAGGGAGAGACAGGCTAACACTGGTAGAGCCGGGGTAGGTGCCAGG--GGTTGCCACTTAGCATATT-------GACGGTCTAGCACCTCTCTTTAGAAAATAGACGTTGTCATCACTTGTTGTTTGGGGCTTTGAGGTCTTAGCACAGA-TACAAGAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111413611 432 - 210400635 CGTCTTCATCTCAAGGTCCAGAGCAATTGTAGAGCCCAGGAATTTCTGCACATAGGGGAggggatgaggttaaatggcagtttccttc---------ctctcccccttccatgagtggttcccttaagccccc-tcccttgtatcaaagtaagaaatgggtagcaatccccttaccttccctggagaggtagaaagaaaacacatggcaagagagctctgtgataatgctcttcatagaatccccatctccaa--tctctgatccatctcaagccttctagtatgcacaggctggaagggagagatgggctaacacccgtagagctagggtagatgtcact--ggctgacacttagtatatc-------gatgatctagcaccactctttagaaaacagagcttgttgttacctattgtttggggctttgaggtcttagcACAGA-TAGGAGAT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35303059 441 - 122678785 CACCCTCCTCTTGAGGCCCAGGGCAATTGAAGAACTCAGGGATTTCTGCAAGCATGGGTCAGGGGGAGGTTGAATGGTGAtttccctctcatggaggttccactctctctatgagtggttccattaagcctct-tctcttggatcaagataagaaaggggaagcaatccctttccttttccttgggaggtcaaaagaaaacacattgcagtttagctccggaacaccagtcttcaaagagactctgtctgtgatgtctctgat----------ccttctcatatcctcaggctggaagggagagatggaatacatctggtgatgccagcttagatgccaaggcggccacaatgtagcatatcctacagggatggtctggtaccagaccacag--aatggaggtacttgtcacccatcgttcttggcactgaggacttagcAGAGACTAGGAGAC i canFam3.chr1 C 0 C 0 e mm10.chr19 38061229 1922 - 61431566 I a score=3111945.000000 s hg38.chr9_GL383541v1_alt 96625 862 + 171286 gtctcacgtaatattcATTCAT---GCTTACGTCATCCTTGAAAGCTGTATAAAAAGACTAGAGTCTGACTTTATCA-TAGTAAGG------GCCACCAAAACCCTTACAACTAAAGGCTTGTGAAGATAACTGTCAGACTCATAGGGTGGAAAAACATGCATCATAACTCATTATCTTTGGGTGCCGTCTGCTCACCATGGCAGCAGACCAGTGGG-TATTTCCCTCTGGCATACATCTCTTCAGACCAGGTTGTCTGCCCTACTGGGGAGACAGCTTGTCCAGACAACCAGCAACACTGGAGCAGACAACACAACTGGAGTGCAAA-TGTGGCCAGCAGGGC--GCATCACAGCTGAGTCAGAGGATGCCTCTGGCACCGCGGCCAAGCCAAGGGCAGTC-TTAGGGGAATGCTGGTGAGCCAGACTGCTTGAAAATAAACATTCAGGAACCGCCTTTAAAG---TTCTTTCCCTAATGCAAGGGG-AAATGGCTGACTACCAGGGGCCACTGGTTCCACATGAAAAGTTCAGCTAATACAGA-----GG---GCTGCTGCAAGAAAGGAACAGACAGC-CTCTTCAGGAGCAAGTGTGCATACACCAGCACTGCAGGCTCCATCCCAGAAGGGGCCTGAGCACTGGC-AGCATGACTGAGAACTGTGAT-CTTTCTTTCAACTGAA--------TTTG-AATTTTTTTTTT---GCCT--AGAAACCTCAGGCTCTT-TGTGTATAATCCAGAATTAGGTAAT----------AATAGATTGATTTTCACTCTGTGTATGGCAAAGCAGAACAGAT------TGTAGAGGAATGG---CAATAAGCTTCTCAATTCTTAATCTTATGGGGGAACCCATTTCCCCCATATAACCTCTTTCGTTTTCAGTTCAAGTTGTAATACT s panTro4.chr9 68662069 861 + 137840987 gtctcacgtaatattcATTCAT---GCTTACGTCATCCTTGAAAGCTGTATAAAAAGACTAGAGTCTGACTTTATCA-TAGTAAGG------GCCACCAAAACCCTTACAACTAAAGGCTTGTGAAGATAACTGTCAGACTCATAGGGTGGAAAAACACGCATCATAACTCATTATCTTTGGGTGCTGTCTGCTCACCATGGCAGCAGACCAGTGGG-TATTTCCCTCTGGCATACATCTCTTCAGACCAGGTTGTCTGCCCTACTGGGTAGACAGCTTGTCCAGACAACCAGCAACACTGGAGCAGACAACACAACTGGAGTGCAAA-TGTGGCCAGCAGGGC--GCATCACAGCTGAGTCAGAGGATGCCTCTGGCACCGCGGCCAAGCCAAGGGCAGTC-TTGGGGGAATGCTGGTGAGCCAGACTGCTTGAAAATAAACATTCAGGAACCGCCTTTAAAG---TTCTTTCCCTAATGCAAGGGG-AAATGGCTGACTACCAGGGGCCACTGGTTCCACATGAAAAGTTCAGCTAATACAGA-----GG---GCTGCTGCAAGAAAGGAACAGACGGC-CTCTTCAGGAGCAAGTGTGCATACACCAGCACTGCATGCTCCATCCCAGAAGGGGCCTGAGCACTGGC-AGCATGACTGAGAACTGTGAT-CTTTCTTTCAACTGAA--------TTTG-AATTTTTTTTTT---GCCT--AGAAACCTCGGGCTCTT-TGTGTATAATCCAGAATTAGGTAAT----------AATAGATTGATTTTCACTCTGTGTATGGCAAAGCAGAACAGAT------TGTAGAGGAGTGG---CAATAAGCTTCTCAATT-TTAATCTTATGGGGGAACCCATTTCCCCCATATAACCTCTTTCATTTTCAGTTCAAGTTGTAATACT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64817984 858 + 135191526 GTCTCACGTAATATTCATTCAT---GCTTAGGTCATCCTTGAAAGCTGTATAAAAAGACTAGAGTCTGACTTTATCA-TAGTAAGG------GCCACCAAAACCCTTACAACTAAAGGCTCATGAAGATAACTGTCAGACTCATAGGGTGGAAAAACATGCATCATAACTCATTATCTTTGGGTGCCGTCTGCTCACCATGGCAGCAGACCAGTGGG-TATTTCCCTCTGGCATACATCTCTTCAGACCAGGTTGTCTGCCCTACTGGGGAGACAGCTTGTCCAGACAACCAGCAACACTGGAGCAGACAACACAACTGGAGTGCAAA-TGTGGCCAGCAGGGC--GCATCACAGCTGAGTCAGAGGATGCCTCTGGCACCGCGGCCAAGACAAGGGCAGTC-TTGGGGGAATGCTGGTGAGCCAGACTGCTTGAAAATAAACATTCAGGAACCGCCTTTAAAG---TTCTTTCCCTAATGCACGGGG-AAATGTCTGACTACCAGGGGCCACTGGTTCCATATGAAAAGTTCAGCTAATACAGG-----GG---GCTGCTGCAAGAAAGGAACAGACAGC-CTCTTCAGGAGCAAGTGTGCATACACCAGCACCGCAGGCTCCATCCCAGAAGGGGCCTGAGCACTGGC-AGCATGACTGAGAATTGTGA-----TCTTTCAACTGAA--------TCTGAAATTTTTTTTTC---GCCT--AGAAACCTCGGGCTCTT-TGTGTATAATCCAGAATTAGGTAAT----------AATAGATTGATTTTCACTCTGTGTATGGCAAAGTAGAACAGAC------TGTAGAGGAGCGG---CAATAAGCTTCTCAATTCTTAATCTTAT-GGGGAACCCATTTCCCCCATATAACCTCTTTCATTTTCAGTTCAAGTTGTAATACT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57854086 862 - 122973662 GTCTCACATAATATTCATTCAT---GTTTACATCATCCTTGAAAGCTGTATAAAAAGACTAGAGTCTGACTTTGTCA-TAGTAAGG------ACCACCAAAACCCTTACAACTAAAGGCTCGTGAAGATAACTGTCAGACTCACGGGGTGGAAAAACAAGCATCGTAACTCATTATCTTTGGGTGCCATCTGCTCACCATGACAGCAGACCAGTGGG-TATTTCCCTCTGGCATACATCTCTTCAGACCAGGTTGTCTGCCCTACTGGGGAGACAGCTTGTCCAGACAACCAGCAACACTGGAGCAGACAACACAACCGGAGTGCAAA-TGTGGCCAGCAGGGC-TGCATCACAGCTGAGTCAGAGGATGCCTCTGGCACCGCAGCCAAGCCAAGGGCAGTC-TTGGGGGAATGCTGCTGAGACAGACTGCTTGAAAATAAACATTCAGGAACAGCCTTTAAAG---TTCTTTCCCTAATGCAAGGGG-AAATGGCTGACTACCAGGGGCCACTGGTTCCACATGAAAAGTTCAGCTAATACAGA-----GG---GCTGCTGCAAGAAAGGAACAGACGGC-CTCTTCAGGAGCAAGTGTGCATACACCAGCACCGCAGGCTCCATCCCAGAAGGGGCTTGAGCACTGGC-GGCATGACTGAGAATTGTGAT-CTTTCTGTCAACTGAA--------TTTG-AAACTTTTTTT----GCCT--AGAAACCTCGGGCTCTT-TGTGTATAATCCAGAATTAGGTAAT----------AATAGATTGATTTTCACTCTGTGTATGGCAAAGCAGAACAGAC------TGTAGAGGAGTGG---CAATAAGCTTCTCAATTCTTCATCTTATGGGGGAACCCATTCCTCCCATATAACCTCTTTCATTTTCAGTTCAAGTTTTAATACT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79787635 860 + 112192347 GTCTCACGTAATATTCATTCAT---GTTTACATCATCCTTGAAAGCTGTATAAAAAGACTAGAGTCTGACTTTATGA-TGGTAAGG------GCCACCAAAACCCTTACAACTAAAGGCTCGTGAAGAT-ACTGTCAGACTCATTGGGTGGAAAAACACGCATTGTAACTCATTCTCTTTGGGTGCCATCTACTCACCATGGCAGCAGACCAG-GGG-TATTTCCCTCTGGCATACATCTCTTCAGACCAGGTTGTCTGCCCTACTGGGGAGACAGCTTGTCCAGACAACCAGCAACACTGGAGCAGACAACACAATTGGAGTGCAAA-TGTGGCCAACAGGAC-CGCATCACAGCTGAGTCAGAGAATGCCTCTGGCACCACGGCCAAGCCAAGGGCAGTC-TTGGGGGAATGCTGGTGAGCCAGACTGCTTGAAAATAAACATTCAGAAACCGCCTTTAAAG---TTCTTTCCCTAATACAAGGGG-AAATGGCTGACTACCAGGGGCCACTGGTTCTACATGAAAAGTTCAGCTAATACAGA-----AG---GCTGCTGCAAGAAAGGAACGGACAGC-CTCTTCAGGAGCAAGTGTGCATACACCAGCACCGCAGGCTCCATCCCAGAAGAGGCCTGAGCACTGGC-GGCATGACTGAGAATTGTGAT-CTTTGTTTCAGCTGAA--------TTTG-AAATGTTTTTT----GCCT--AGAAACCTCGGGCTCTT-TGTGTATAATCCAGAATTAGGTAAT----------AATAGATTGATTTTCACTCTGTGTATGGCAAAGCAGCACATAC------TGTAGAGGAGTGG---CAATAAGCTTCTCAATTCTTAATCTTATGGGGGAACCCATTCCCCCCATATAACCTCTTTCATTTTCAGCTCAAGTTTTAATACT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80867625 860 + 112612857 GTCTCACGTAATATTCATTCAT---GTTTACATCATCCTTGAAAGCTGTATAAAAAGACTACAGTCTGACTTTATGA-TGGTAAGG------GCCACCAAAACCCTTACAACTAAAGGCTCGTGAAGAT-ACTGTCAGACTCATTGGGTGGAAAAACACGCATTGTAACTCATTCTCTTTGGGTGCCATCTACTCACCATGGCAGCAGACCAG-GGG-TATTTCCCTCTGGCATACATCTCTTCAGACCAGGTTGTCTGCCCTACTGGGGAGACAGCTTGTCCAGACAACCAGCAACACTGGAGCAGACAACACAATTGGAGTGCAAA-TGTGGCCAACAGGAC-CGCATCACAGCTGAGTCAGAGAATGCCTCTGGCACCACGGCCAAGCCAAGGGCAGTC-TTGGGGGAATGCTGGTGAGCCAGACTGCTTGAAAATAAACATTCAGAAACCGCCTTTAAAG---TTCTTTCCCTAATACAAGGGG-AAATGGCTGACTACCAGGGGCCACTGGTTCCACATGAAAAGTTCAGCTAATACAGA-----AG---GCTGCTGCAAGAAAGGAACGGACAGC-CTCTTCAGGAGCAAGTGTGCATACACCAGCACCGCAGGCTCCATCCCAGAAGAGGCCTGAGCACTGGC-GGCATGACTGAGAATTGTGAT-CTTTGTTTCAGCTGAA--------TTTG-AAATGTTTTTT----GCCT--AGAAACCTCGGGCTCTT-TGTGTATAATCCAGAATTAGGTAAT----------AATAGATTGATTTTCACTCTGTGTATGGCAAAGCAGCACATAC------TGTAGAGGAGTGG---CAATAAGCTTCTCAATTCTTAATCTTATGGGGGAACCCATTCCCCCCATATAACCTCTTTCATTTTCAGTTCAAGTTTTAATACT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76916635 860 + 107442819 GTCTCACGTAATATTCATTCAT---GTTTACATCATCCTTGAAAGCTGTATAAAAAGACTAGAGTCTGACTTTATGA-TGGTAAGG------GCCACCAAAACCCTTACAACTAAAGGCTCGTGAAGAT-ACTGTCAGACTCATTGGGTGGAAAAACACGCATCATAACTCATTCTCTTTGGGTGCCATCTACTCACCATGGCAGCAGACCAG-GGG-TATTTCCCTCTGGCATACATCTCTTCAGACCAGGTTGTCTGCCCTACTGGGGAGACAGCTTGTCCAGACAACCAGCAACACTGGAGCAGACAACACAATTGGAGTGCAAA-TGTGGCCAACAGGAC-CGCATCACAGCTGAGTCAGAGAATGCCTCTGGCACCACGGCCAAGCCAAGGGCAGTC-TTGGGGGAATGCTGGTGAGCCAGACTGCTTGAAAATAAACATTCAGAAACCGCCTTTAAAG---TTCTTTCCCTAATACAAGGGG-AAATGGCTGACTACCAGGGGCCACTGGTTCCACATGAAAAGTTCAGCTAATACAGA-----AG---GCTGCTGCAAGAAAGGAATGGACAGC-CTCTTCAGGAGCAAGTGTGCATACACCAGCACCGCAGGCTCCATCCCAGAAGAGGCCTGAGCACTGGC-GGCATGACTGAGAATTGTGAT-CTTTGTTTCAGCtgaa--------tttg-aaatgtttttt----gcCT--AGAAACCTCGGGCTTTT-TGTGTATAATCCAGAATTAGGTAAT----------AATAGATTGATTTTCACTCTGTGTATGGCAAAGCAGCACATAC------TGTAGAGGAGTGG---CAATAAGCTTCTCAATTCTTAATCTTATGGGGGAACCCATTCCCCCCATATAACCTCTTTCATTTTCAGTTCAagttttaatact i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81180408 860 + 108555830 GTCTCACGTAATATTCATTCAT---GTTTACATCATCCTTGAAAGCTGTATAACAAGACTAGAATCTGACTTTATCA-TGGTAAGG------GCCACCAAAACCCTTACAACTAAAGGCTCATGAAGAT-ACTGTCACACTCATGGGGTGGAAAAACATGCATCGTAACTCATTCTCTTTGGGTGCCATCTGCTCACCATGGCAACAGACCAG-GGG-TATTTCCCTCTGGCATACATCTCTTCAGACCAGGTTGTCTGCCCTACTGGGTAGACAGCTTGTCCAGACAACCAGCAACACTGGAGCAGACAACACAATTGGAGTGCAAA-TGTGGCCAACAGGAC-CACATCACAGCTGAGTCAGAGAATGCCTCTGGCACCACGGCCAAGCCAAGGGCAGTC-TTGGGGGAATGCTGGTGAGCCAGACTGCTTGAAAATAAACATTCAGAAACCACCTTTAAAG---TTCTTTCCCTAATGCAAGGGG-AAATGGCTGACTACCAGGGGCCACTGGTTCCACATGAAAAGTTCAGCTAATACAGA-----AG---GCTGCTGCAAGAAAGGAACGGACAGC-CTCTTCAGGAGCAAGTGTGCATACACCAGCACCGCAGGCTCCATCCCAGAAGAGGCCTGAGCACTGGC-GGCATGACTGAGAATTGTGAT-CTTTCTTTCAGCTGAA--------TTTG-AAATGTTTTTT----GCCT--AGAAACCTCGGGCTCTT-TGTGTATAATCCAGAATTAGGTAAT----------AATAGATTGATTTTCACTCTGTGTATGGCAAAGCAGCACATAC------TGTAGAGGAGTGG---CAATAAGCTTCTCAATTCTTAATCTTATGGGGGAACCCATTCCTCCCATATAACCTCTTTCATTTTCAGTTCAAGTTTTAATACT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111414043 862 - 210400635 GTCTCACGTAATATTCATTCGT---ATTTACATCATCCTTGAAAGCTGTATAAAAAGACT--AGTCTGACTCTATCA-CAGTAAGG------GCCACCAAAACTCTTACAACTAAAGGTTCCTGAAGATAACTGTCAGACTCACGAAGTGGAAAAACACGCATAGTAACTCATTATCTTTGGGTGCCGTGTGCTCATCGTAGCAGCAGACCAGTGGG-TATTTCCCTCTGGAATACATCTCGTCAGACCAGGTTGTCTGCCTCACTGGGGAG--AGTTCATCCAGACAACCAGCAACACTGGAGCAGACAACACAACTGGAGTGCAAA-TGTGGCCAGCAGGAC-CACATCACAGCTGAGTCAGAGCATGCCTGTGGCACCGCGGCCAAGCCAAGGGCAGTC-CTGGAGGAATGCTGGTAAGCCAGACTGCCTGAAAGTAAACGTTCAAGAACCGTCTTCAAAG---TTCTTTCCCTAATGCAAGGGG-AAATGGCTGACTACCAGGGGCCACTGGTTCCAAATGAAAAGTTCAGCTAATACAAGTTTCCTT---TCTGCTGCAAGAAAGGAAAGAAAGGC-CTCTTCAGGAGCAAGTGTGTGTATACCAGCACCTCAGGCTTCATCCCAGAAAGGGCCTGAGCATTGGC-TGCATGACTGAGAATTGTGAT-CTTTTTTTCAACTGAA--------TTTG-AAATTTTTTTC-----CCT--AGAAACCTTGGGCTCTT-TATGTATAATCCAGAATTACGTAAT----------AATAGATCGATTTTCACTCTGTGTATGGCGAAGCAGCACAGAC------TGTAGAGAAATGG---CAATAAGCTTCTCAGTTCTTAATCTTATGGGGGAACTTGTTTCCCCCATATAACTTCTTTCATTTTCAGTTCAAGTTTTAATACT i calJac3.chr1 C 0 C 0 s mm10.chr19 38063151 806 - 61431566 GTCCCACCCGATGTTCATATAC---ATTTCTCTCTTCTTT----GCTGTA-AAAAAGACTGAAACCTGGATCTATTAGTATTAAAGTAAATATCTACTCCAACCCCTG-AACTGAGTGTTTCTGAATATAGCTACGCAACC-------TGGGAAAGTAGGTA-GATGACTTGCCATGTTTGAGCGCTGTCTGCTCAACATGGCAGCAATTGAGTGGGTTATTGCCATCTGGAACATGTTTCTTCAGCCCAAGTGGT-------ACCAGG-AGACAGCTAGTCTGGGCAGCTAGCAAGACTGAAGCAGACAAAACAACTAGAGCCAAAACTGTGGCCAAAGAGAGAAGAATCCTAGCAGAGTCCAAGACTGCCTTAGGCACTATGGTCAAGCTGTGGGCCGTCTTTAGTGAAATTCTAGGTAGCCAGGCTG--------------TTCAGGAACTGTCCTCTGAG---TTCTTTTCCTGACCCATGGGG-AAATGGATGCTGGTGAGGAATCACTAAAGTTACCTGAAAGGTTTCACTAATACAAA-----GG---GCTGCTGTAAGGAAGAA--GGAAGGCTTTCTTTAGATGCAAGTGCACAGACTACA----CTCAGGCATCACTC---AGGGGGCCTGACCTTCAGCTGGTATTGCCAGGA-----TAA-CTATCTTTCTACTGAA--------CTTG-ACAGCTGTTTT----ACCTGCAGAAAATTCATGTTTTTAAGTGTATAATTAAGCATTACCCAATGCTTAGTACAAGTAGATCGACTTCCTATCTGAGTGGGGCATAGCAGC----------------------------------------TGACTCTTAATCTTGT-GGGAAACCTATTGTCTCTATTTATGCTCTTTCATTTTTAGTTAAATTGGTTTTTCt i mm10.chr19 I 1922 I 103 s canFam3.chr1 35303500 845 - 122678785 ATCCCAGTTCATGTTCATTTATTACATTTATGTCATCTCTGAAAGCTGTCTAAAAAGACTAGAGCCTGACTCTACTA-TACTAAA-------CTTACCCAAACTCTTAGAACTAAAGATCCATGACGATCAGTGTTGGATTCGTAGACAGGAAGAACAGGCATGGTGACCTCCCGTATTTAGGTGCTGTCTCCTCACAGTGGTAGCAGACCAGTGGG-TTTTCCCAGCTGGCGTATGCTTCCTCAGACCATGCTTTCCCCCTTCCCCAGGAGACAGCTTGTCCAGACAAC--ATGACACGGATATAGACGTCGCAACTGGAGCACAAA-TGTGGCCAACAAGGC-CGAATCACAGCTGAGTCAGAGGATGCCT-TGGCATCGGAGCCAAGCCGAGGGCAATT-TTTGTGGAATGCTGGTTAGCCAGACTGTTTGAAAATAAAATTTCAGGAACTGCCCTCAAAGTTTTTTTTTCCCTAATTCAAGGGGAAAATGGCTACCTAAAAGGGGCCGCTGGTTGCACATGAACCGTTGAGTTAACATGGG-----GACATATTACTGCATGCAGGGA-------------------AGCAAGTGTACATGCG---------------------CAGAAGAGGCCT-----TTGGCTGACATCGCCAAGA-TTTTGATATTTTGATACAATTGGAAATTGTTTTTTG-TTGTTTTTTTTTTCCCCCT--AGGAGCTGTAGTCTCTC-TGTGTATAATCTAGAATTAGGGAAG----------GATAGACTGGCTCTAAGTCTGAGTATGGCAAAGCAGCAATGGCTTTGGGTGTGGGGGGGTGGTGACACTGCACTTCCCAATTTTTAGTTGTAT-GGAGAACTCATGGCCCTGTCATAGACTCTTTCATTTCCAGTTGAAGTTTGATTACT i canFam3.chr1 C 0 C 0 a score=5760162.000000 s hg38.chr9_GL383541v1_alt 97487 1759 + 171286 TT-AGAATCTCTGT-----GGCCTGCAGGGTATCCAG----------------------------------------TGATTTGGCAGATTAAAGGATTCTGTCTACTTAAAGTCCATCTATACCTA---------------------GTTTCATCCTACTTGAATCTTAACGATCTGACA---AAG-----GAAAAAAAAAAAAAAGCCTTTTCCAGAGGTT-------CTGGAAGCTCTAGAGCCCTATGCCAGATAGGAGTGTTGGGTTCAT---------TGAACTAGGCAGGAAGATTCTCCTAATATCAGACACT--GGACAAAATTTTCCAAGAACTCCAGGCTACCATC---ATTGTT---TTTAGAAAGGAGAATACAATGGCACCTGCAGCCACCTACCCATTGACT-CCTCTTCCTCAGAACAGATTGTATCTGATGACACACTC--AGCC----TGGTTTGGCTGTCATTCCTCCAGCCTCTTCTCCTGGGGCAGACACCTGAATGACAATTTCTGAATCACCCCTAACAGTTCAACTGAGATAGTAAACTCATGATGAGCTACCTTTTGTTCCCCAATGAGAAGCTTAATGTTGCTCAAATTGTCAGTAAATAGAACCCAGCTTTGGCAACAAATGAATGATGGAAA-----GAAAAAG-GGTACAAGAGCATGCGGTCTAGTCTGGTGGTTCTGTATGAGACTTAGTGTCAGCAGTCTTGGTCTTATTCCCAGCAGCCTCTCTGACTCACTTTGGGCAGATCATGTTGTGTTTTCTGGATGCTTTTTGGATCAGAAATGTGACTGTGGTTCACTTGGCCTAGCATCCTGAGCACAAGTTGCTAGTGAGGCACTTTGGCTGCAAATGCAC-----AAAA-----TATTGTCCACACAGCAGGTGAGTTACTA----CCCTTTAAAGACAACTCTCAGATGTCCGTCATCTGCAAGGAAGATGAATTTACAACAAGGCTG--------------------------------------------------------------------------------------------------------------------------------------------------GCTGTG------------------gaagctgacact---aagctgggactaggtg-------------------------------------ggaaagagatttcct-------gggagag---------------atggctatgaaggct----------------------ctgaggagaaa---ggagccagagtagctggggacagGCCCAGTGTCCTTATGGggcac---agcagccatagt------------------gcctaggagccatggcattttt-aggggtccatgacaatattttaattttatttatttgaaaattggaagggtaaaatga---------------------------------------------at------ataataatttctag--------------------------------------------------------------------------cctacatcatata----cctctttatgcc----------------------------------------------------aatgtagtaata--aactaaaat----------------gttaagattat-tttattt---------att--tttatttttttt---------a--------tggaggaat--------------------------gagcc---cacaa---------aagtcataaagatgccctgggTAGGGAAAACTTTCAGCTCAGGACGCAAACCTGACCCCTGAGGAAGAGGAGAACCTGGGCCGATGG-GAGCTGCTgaagggccccatggcagacag-aatggcct-------gcccc------tctgctatgcttggtcact-----------gcctgggagcagcccagagtggtgtggtcttggtacaaactctcctgcaggtccaaaggtgaggtggctggagac---ccagtcaatgatggttccttcagcaagttctcttaaagggg-------------atctctgtggcCCCTGCAATTAGGTATCCAGGAAACAAAGTATTA-----CACATACATTATAATACAAAGAATTGTAGCTCTCCTCCACTCAGTTCTCCCTGCT-----------CATATCTCACAAAAAGATT-CTGTTTCATTGGTAAGTCATGTTACAAAGAGCAATGAAGACTTCATCTCTGTCTTTGATATTCACATGAGTTCTTAGAGAACAGAAGCAGATTACA--GAAGCTAACT--GGTCATAGGCATtctccactactagaatgttctcgtcaaggcttgctggccacca-ggagtgctttagaggg s panTro4.chr9 68662930 1756 + 137840987 TT-AGAATCTCTGT-----GGCCTGCAGGGTCTCCAG----------------------------------------TGATTTGGCAGATTAAAGGATTCTGTCTACTTAAAGTCCATCTATACCTA---------------------GTTTCACCCTACTTGAATCTTAAAGATCTGACA---AAG---------AAAAAAAAAAAGCCTTTTCCAGAGGTT-------CTGGAAGCTCTAGAGCCCTATGCCAGATAGGATTGTTGGGTTCAT---------TGAACTAGGCAGGAAGATTCTCCTAATATCAGACACT--GGACAAAATTTTCCAAGAACTCCAGGCTACCATC---ATTGTT---TTTAGAAAGGAGAATACAATGGCACCTGCAGCCACCTACCCATTGACT-CCTCTTCCTCAGAACAGATTGTATCTGATGACACACTC--AGCC----TGGTTTGGCTGTCATTCCTCCAGCCTCTTCTCCTGGGGCAGACACCCGAATGACAATTTCTGAATCACCCCTAACAGTTCAACTGAGATAGTAAACTCATGATGAGCTACCTTTTGTTCCCCAATGAGAAGCTTAATGTTGCTCAAATTGTCAGTAAATAGAACCCAGCTTTGGCAACAAATGAATGATGGAAA-----GAAAAAG-GGTACAAGAGCATGTGGTCTAGTCTGGTGGTTCTGTATGAGACTTAGTGTCAGCAGTCTTGGTCTTATTCCCAGCAGCCTCTCTGACTCACTTTGGGCAGATCGTGTTGTGTTTTCTGGATGCTTTTTGGATCAGAAATGTGATTGTGGTTCACTTGGCCTAGCATCCTGAGCACAAGTTGCTAGTGAGGCACTTTGGCTGCAAATGCAC-----AAAA-----TATTGTCCACACAGCAGGTGAGTTACTA----CCCTTTAAAGACAACTCTCAGATGTCTGTCATCTGCAAGGAAGATGAATTTACAACAAGGCTG--------------------------------------------------------------------------------------------------------------------------------------------------GCTGTG------------------GAAGCTGACAGT---AAGCTGGGACTAGGTG-------------------------------------GGAAAGAGATTTCCT-------GGGAGAG---------------ATGGCTATGAAGGCT----------------------CTGAGGAGAAA---GGAGCCAGAGTAGCTGGGGACAGGCCCAGTGTCCTTattgggcac---agcagccatagt------------------gcctaggagccatggcattttt-aggggtccatgacaatattttaattttatttatttgaaaattggaagggtaaaatga---------------------------------------------at------ataataatttctag--------------------------------------------------------------------------cctacatcatata----cctctttatgcc----------------------------------------------------aatgtagtaata--aactaaaat----------------gttaagtttat-tttattt---------att--tttatttttttt---------a-------atggaggaat--------------------------gagcc---cacaa---------aagtcataaagatgccctgggTAGGGAAAACTTTCAGCTCAGGACGCAAACCTGACCCCTGAGGAAGAGGAGAACCTGGGCCGATGG-GAGCTGCTgaagggccccatggcagacag-aatggcct-------gcccc------tctgctatgcttggtcact-----------gcctgggagcagcccagagtggtgtggtcttggtacaaactctcctgcaggtccaaaggtgaggtggctggagac---ccagtcaatgatggttccttcagcaagttctcttaaagggg-------------atctctgtggcCCCTGCAATTAGGTATCCAGGAAACAAAGTATTA-----CACATACATTATAATACAAAGAATTGTAGCTCTCCTCCACTCAGTTCTCCCTGCT-----------CATATCTCACAAAAAGATT-CTGTTTCATTGGTAAGTCATGTTACAAAGGGCAATGAAGACTTCATCTCTGTCTTTGATATTCACATGAGTTCTTAGAGAACAGAAGCAGATTACA--GAAGCTAACT--GGTCATAGGCATtctccactactagaatgttctcgtcaaggctggctggccacca-ggagtgctttagaggg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64818842 1751 + 135191526 TT-AGAATCTCTGT-----GGCCTGCAGGGTCTCCAG----------------------------------------TGATTTGGCAGATTAAAGGATTCTCTCTACTTAAAGTCCATCTATACCTA---------------------GTTTCATCCTACTCGAATCTTAAAGATCTGACa---aagaaaaaaaaaaaaaaaaaaaaaCCTTTTCCAGAAGTT-------CTGGAAGCTCTAGAGCCCTATGCCAGATAGGAATGTTGGGTTCAT---------TGAACTAGGCAGGAAAATTCTCCTAATATCAGACACT--GGACAAAATTTTCCAAGAACTCCAGGCTACCATC---ATTGTT---TTTAGAAAGGAGAATACAATGGCACCTGCAGCCACCTACCCATTGACT-CCTCTTCCTCAGAACAGATTGTATCTGATGACACACTC--AGCC----TGGTTTGGCTATCATTCCTCCAGCCTCTTCTCCTGGGGCAGACACCCGAATGACAATTTCTGAATCACCCCTAACAGTTCAACCGAGATAGTAAACTCATGATGAGCTACCTTTTGTTCCCCAATGAGAAGCTTAACGTTGCTCAAATTGTCAGTAAATAGAACCCAGCTTTGGCAACAAATGAATTATGGAAA-----GAAAAAG-GGTGCAAGAGCATGTGGTCTAGTCTGGTGGTTCCGTATGAGACTTAGTGTCAGCAGTCTTGGTCTTATTCCCAGCAGCCTCTGTGATTCACTTTGGGCAGATCGTGTTGTGTTTGCTGGATGCTTTTTGGATCAGAAATGTGACTGTGGTTCACTTGGCCTAGCATCCTGAGCACAAGTTGTTAGTGAGGCACTTTCACTGCAAATGCAC-----AAAA-----TATTGTCCACACAGCAGGTGAGTTACTA----CCCTTTAAAGACAACTCTCAGATGTCTGTCATCTGCAAGGAAGATGAATTTACAACAAAGCTA--------------------------------------------------------------------------------------------------------------------------------------------------GCTGTG------------------gaagcagatact---aagctgggactaggtg-------------------------------------ggaaagagatttcct-------gggagag---------------atggctgtgaaggct----------------------ctgaggagaaa---ggagccagagtagctggggacagGCCCAGTGTCCTTattgggcac---agcagccatagt------------------gcctaggagccatggcattttt-aggggtccatgacaatattttaattttgtttattttaaaattggaagggtaaaatga---------------------------------------------at------ataataatttctat--------------------------------------------------------------------------tctacatcatata----tctctttatgcc----------------------------------------------------aatgtagtaata--aactaaaat----------------gttaagtttttatttattt---------tat--tttatttttttt---------ttatttttatggaggaat--------------------------gggcc---cacaa---------aagtcataaagatgccctgggTAGGGAAAACTTTCAGCTCAGGACACAAACCTGACCCCTGAGGAAGAGGAGAACCTGGGCCAATGG-GAGCTGCTGAAGGGCCCCGTGGCAGACAG-AACGGCCT-------GCCCC------TCTGCTATGCT---------------------------------CAGAGTGgtgtggtcttggtacaaactctcctgcaggtccaaaggtgaggtggctggagac---ccagtcaatgatagttccttcagcaagttctcttaaagggg-------------atctctgtggcCCCTGCAATTAGGTATCCAGGAAACAAAGTATTA-----TACATACATTATAATACAAAGAATTGTAGCTCTCCTCCATTCAGTTCTCCCTGCT-----------CATATCTCACAAAAAGATT-CTGTTTCATTGGTAAGTCATGTTACAAAGAGCAATGAAGACTTCATCTCTGCCTTTGATACTCACATGAGTCCTTAGAGAACAGAAGCAGATTACA--GAAGCTAACT--GGTCATAGGCATtctccactactagaatgttctcgtcaaggctggctggccacca-ggagtgctttagaggg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57854948 1774 - 122973662 TT-AGAATCCCTGT-----GGCCTGCAGGGTCTCCAG----------------------------------------TGATTTGGCAGATTAAAGGATTCTGTCTACTTAAAGTCCATCCATACCTA---------------------GCTTCATCCTACTTGAATCTTAAATATCTGACA---AAG-------AAAAAAAAAAAAAGCCTTTTCCAGAGGTT-------CTGGAAGCTCTAGAGCCCTATGCCAGATAGGAGTGTTGGGCTCAT---------TGAACACGGCAGGAAAATTCTCCTAATATCAGACACT--GGACAAAATTTCCCAAGAACTCCAGGCTACCTTC---ATTGTT---TTTAGAAAGGAGAATACAGTGGCACCTGCAGCCACCTACCCACTGACT-CCTCTTCCTCAGAACAGATTGTATCCAATGACATACTC--AGCCTGGTTGGTTTGGCTGTCATTCCTCCAGCCTCTTCTCCTGGGGCAGACACCTGAATGACAATTTCTGAATCACCCCTAGCAGTTCAACTGAGATAATAAACTCATGATGAGATACCTTTTGTTCCCCAATGAGAAGCTTAATGTTGTTCAAATTGTCAGTAAATAGAACCCAGCTTTGGCAACAAATGAATGATGGAAA-----GAAAAAG-GTGGCAAGAGCATGTGGTCTAGTCTGGTGGTTCCGTATGAGACTTGGTGTCAGCAGTCTTGGTCTTATTCCCAGCAGCCTCTCTGACTCACTTTGGGCAGATCGTGTTGTGTTTGCTGGATGCTTTTTGGATCAGAAATGTGATTGTGGTTCACTTGGCCTAGGATCCTGAGCACAAGTTGTTAGTGATGCAGTTTGACTGCAAACACAC-----AAAA-----TATTGTCCACACAGCAGGTGAGTTACTA----CCCTTTAAAGATAACTCTCAGATGTCTGTCATCTGCAAGGAAGATGAATTTACAACAAGGCTG--------------------------------------------------------------------------------------------------------------------------------------------------GCTGTg------------------gaagcagacact---aagctgggactaggtg-------------------------------------ggaaagagatttcct-------gggagag---------------gtggctgtgaaggct----------------------ctgaggaggaa---ggagccagagtagctggggacaggcccaatgtccttattgggcac---agcagccatagt------------------gcctaggagccatggcattttt-aggggtccatgacaatattttaattttatttattttaaaattggaagggtaaaatga---------------------------------------------at------ataataatttctaa--------------------------------------------------------------------------cttacatcatata----cctctttatgcc----------------------------------------------------aatgcagtaata--aactaaaat----------------gttaagttttt-------------------t--tttttttttttt---------a-------atggaggaatgggcccaccacagcaaaagagcc-tagggcc---cacca---------aagtcataaagatgccctaggtagggaaaactttcagctcaggacacaaacctgacccctgaggaagaggagaacctgggccgatgg-gagatgctgaagggccccatggcagac---aatggcct-------gccct------gcagctatgcttggtcact-----------ggctgggaacagcccagagtggtgtggtcttggtacaaactctcctgcagatccaaaggtgaggtggctggagac---ccagtcaatgatggttccttcagcaagttctcttaaagggg-------------atctctgtggcCCCTGCAATTAGGTATCCAGGAAACAAAGTATTA-----TACATACATTATAATACACAGAATTGTAGCTCTCCTCCACTCAGTTCTCCGTGTT-----------CATATCTCACAAAAAGAT---TGTTTCATTGGTAAGTCATGTTACAAAGGGCAATGAAGACTTCATCTCTGCCTTTGATACTCACATGAGTTCTTAGAGAACAGAAGCAGATTACA--GAGGCTAACT--GGTCATAGGCATtctctactactagaacgttcttgtcaaggctggctggccacca-ggaatgctttagaggg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79788495 1783 + 112192347 TTAAAAATCTCTGT-----GGCCTGCAGGGTCTCCAG----------------------------------------TGATTTGGCAGATTAAAGGATTCTGTCTACTTAAAGTCCATCTATACCTA---------------------GTTTCATCCTACTCGAATCTTAAAGATCTGATG-AAAAA---------AAAAAAAAAAGGCCTTTTCCAGAGGTT-------CTGGAAGCTCTAGAACCCTATGCCAGATAGGAGTGTTGCGTTCAT---------TGAACTAGGCAGGAAAATTCTCCTAATATCAGGCACT--GGACAAAATTTCCCAAGAACTCCAGGCTACCTTC---ATTGTT---TTTAGAAAGGAGAATACTATGGCACTTGCAGCCACCTACCCATTGACT-CCTCTTCCTCAGAACAGATTGTATCTGATAACACACTC--CGCT----TGGTTTGGCTGTCATTCCTCCAGCCTCTTCTCCTGGGGCAGACACCTGAATGACAATTTCTGAATCACCCCTACCAGTTCAACTGAGATAATAAACTCATGATGAGTTACCTTTTGTTCCCTAATGAGAAGCTTAACGTTGCTCAAATTGTCAGTAAATAGAACCCATCTTTGGCAAAAAATGAATGATGGAAA-----GAAAAAG-GGGGCAAGGGCATGTGGTCTAGTCTGGTGGTTCCGAATGAGACTTGGAGTCAGCAGTCTTGGTCTTGTTCCCAGCAGCCTCTCTGACTCACTTTGGGCAGATCGTGTTGTGTTTGCTGGATGATTTTTGGATCAGAAATGTGACTGTGGTTCACTTGGACTAGCGTCCTGAGCACAAGTTGTTAGTGAGGCACTTTGACTGCAAATGCAC-----AAAA-----TATTGTCCACAGAGCAGGTGAGTTACTA----TCCTTTAAAGACAACTCTCAGATGTCTGTCATCTGCAAGGAAGGTGAATTTACAACAAGGCTG--------------------------------------------------------------------------------------------------------------------------------------------------GCTGTG------------------gaagcagacagt---aagctgggactaggtg-------------------------------------ggaaagagatttcct-------gggagag---------------atggctgtgaaggct----------------------ctgaggaggaa---ggagccagactagctggggacaggcccaatgtccttattgggcac---agcagccatagt------------------gcctaggagccatggcattttt--ggggtccatgacaatattttaat----tttattttaaaattggaagggtaaaatga---------------------------------------------at------ataataatttctag--------------------------------------------------------------------------cctacattatata----cctcttgatgcc----------------------------------------------------aatgcagtagta--aaccaaaat----------------gttaagggttt------------------tt--tttttttttttt---------a-------atggaggaatgggcccaccacagcaaaagggcc-tggggcc---cacaa---------aagtcataaagatgccctgggtagggaaaactttcagctcaggatgcaaacctgacccctgaggaagaggagaACCTGGGCCAACGG-GAGCTGCTgaagggccccatggcagacag-aatggcct-------gcccc------tctgctgtgcttggtcactctggagcaggcagctgggagcagcccagagtggtgtggtcttggtac--actctcctgcaggtccaaaggtgaggtggctggagac---ccagtcaatgatggtttcttcagcaagttctcttaaagagg-------------atctctgtggcCCCTGCAATTAGGTATCCAGGACACAAAGTATTATAATGTATGTACATTATAATACAAAGAATTATAGCTCTCCTCCACTCAATTCTCCCAGCT-----------CATATCTCACAAAAAGAT---TGTTTCATTGGTAAGTCATGTTACAAAGGGCAATGAAGATTTCATCTCTGCCTTTGTTACTCACGTGAGTTCTTACAGAACAGAAGCAGATTACA--GAGGTTAACT--GGTCATAGGCATtctccaccactagaatgttctcgtcaaggctggctggccacca-ggagtgctttagaggg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80868485 1778 + 112612857 TTAAAAATCTCTGT-----GGCCTGCAGGGTCTCCAG----------------------------------------TGATTTGGCAGATTAAAGGATTCTGTCTACTTAAAGTCCATCTATACCTA---------------------GTTTCATCCTACTCGAATCTTAAAGATCTGATG---AAA---------AAAAAAAAAAGGCCTTTTCCAGAGGTT-------CTGGAAGCTCTAGAACCCTATGCCAGATAGGAGTGTTGCGCTCAT---------TGAACTAGGCAGGAAAATTCTCCTAGTATCAGGCACT--GGACAAAATTTCCCAAGAACTCCAGGCTACCTTC---ATTGTT---TTTAGAAAGGAGAATACTATGGCACTTGCAGCCACCTACCCATTGACT-CCTCTTCCTCAGAACAGATTGTATCTGATAACACACTC--CGCC----TGGTTTGGCTGTCATTCCTCCAGCCTCTTCTCCTGGGGCAGACACCTGAATGACAATTTCTGAATCACCCCTACCAGTTCAACTGAGATAATAAACTCATGATGAGTTACCTTTTGTTCCCTAATGAGAAGCTTAACGTTGCTCAAATTGTCAGTAAATAGAACCCATCTTTGGCAAAAAATGAATGATGGAAA-----GAAAAAG-GGGGCAAGGGCATGTGGTCTAGTCTGGTGGTTCCGAATGAGACTTGGAGTCAGCAGTCTTGGTCTTGTTCCCAGCAGCCTCTCTGACTCACTTTGGGCAGATCGTGTTGTGTTTGCTGGATGATTTTTGGATCAGAAATGTGACTGTGGTTCACTTGGACTAGCGTCCTGAGCACAAGTTGTTAGTGAGGCACTTTGACTGCAAATGCAC-----AAAA-----TATTGTCCACAGAGCAGGTGAGTTACTA----TCCTTTAAAGACAACTCTCAGATGTCTGTCATCTGCAAGGAAGGTGAATTTACAACAAGGCTG--------------------------------------------------------------------------------------------------------------------------------------------------GCTGTG------------------gaagcagacagt---aagctgggactaggtg-------------------------------------ggaaagagatttcct-------gggagag---------------atggctgtgaaggct----------------------ctgaggaggaa---ggagccagactagctggggacaggcccaatgtccttattgggcac---agcagccatagt------------------gcctaggagccatggcattttt--ggggtccatgacaatattttaat----tttattttaaaactggaagggtaaaatga---------------------------------------------at------ataataatttctag--------------------------------------------------------------------------cctacattatata----cctcttgatgcc----------------------------------------------------aatgcagtagta--aaccaaaat----------------gttaaggg---------------------tt--tttttttttttt---------a-------atggaggaatgggcccaccacagcaaaagggcc-tggggcc---cacaa---------aagtcataaagatgccctggggagggaaaactttcagctcaggatgcaaacctgacccctgaggaagaggagaACCTGGGCCAACGG-GAGCTGCTgaagggccccatggcagacag-aatggcct-------gcccc------tctgctgtgcttggtcactctggagcaggcagctgggagcagcccagagtggtgtggtcttggtac--actctcctgcaggtccaaaggtgaggtggctggagac---ccagtcaatgatggtttcttcagcaagttctcttaaagaag-------------atctctgtggcCCCTGCAATTAGGTATCCAGGACACAAAGTATTATAATGTATGTACATTATAATACAAAGAATTATAGCTCTCCTCCACTCAATTCTCCCAGCT-----------CATATCTCACAAAAAGAT---TGTTTCATTGGTAAGTCATGTTACAAAGGGCAATGAAGATTTCATCTCTGCCTTTGTTACTCACGTGAGTTCTTACAGAACAGAAGCAGATTACA--GAGGTTAACT--GGTCATAGGCATtctccaccactagaatgttctcgtcaaggctggctggccacca-ggagtgctttagaggg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76917495 1785 + 107442819 ttaaaaatctctGT-----GGCCTGTAGGGTCTCCAG----------------------------------------TGATTTGGCAGATTAAAGGATTCTGTCTACTTAAAGTCCATCTATACCTA---------------------GTTTCATCCTACTCGAATCTTAAAGAtctgatgggaaaa---------aaaaaaaaaaggccttttcCAGAGGTT-------CTGGAAGCTCTAGAACCCTATGCCAGATAGGAGTGTTGCGCTCAT---------TGAACCAGGCAGGAAAATTCTCCTAATATCAGGCACT--GGACAAAATTTCCCAAGAACTCCAGGCTACCTTC---ATTGTT---TTTAGAA---AGAATACTATGGCACTTGCAGCCACCTACCCATTGACT-CCTCTTCCTCAGAACAGATTGTATCTGATAACACACTC--CGCC----TGGTTTGGCTGTCATTCCTCCAGCCTCTTCTCCTGGGGCAGACACCTGAATGACAATTTCTGATTCACCCCTACCAGTTCAACTGAGATAATAAACTCATGATGAGTTACCTTTTGTTCCCTAATGAGAAGCTTAACGTTGCTCAAATTGTCAGTAAATAGAACCCATCTTTGGCAAAAAATGAATGATGGAAA-----GAAAAAG-GGGGCAAGGGCATGTGGTCTAGTCTGGTGGTTCCGAATGAGACTTGGAGTCAGCAGTCTTGGTCTTGTTCCCAGCAGCCTCTCTGACTCACTTTGGGCAGATCATGTTGTGTTTGCTGGATGATTTTTGGATCAGAAATGTGACTGTGGTTCACTTGGACTAGTGTCCTGAGCACAAGTTGTTAGTGAGGCACTTTGACTGCAAATGCAC-----AAAA-----TATTGTCCACAGAGCAGGTGAGTTACTA----TCCTTTAAAGACAACTCTCAGATGTCTGTCATCTGCAAGGAAGGTGAATTTACAACAAGGCTG--------------------------------------------------------------------------------------------------------------------------------------------------GCTGTG------------------GAAGCAGACAGT---AAGCTGAGACTAGGTG-------------------------------------GGAAAGAGATTTCCT-------GGGAGAG---------------ATGGCTGTGAAGGCT----------------------CTGAGGAGGAA---GGAGCCAGACTAGCTGGGGACAGGCCCAATGTCCTTACTGGGCAC---AGCAGCCATAGT------------------GCCTAGGAGCCATGGCATTTTT--GGGGTCCatgacaatattttaat----tttattttaaaactggaagggtaaaatga---------------------------------------------at------ataataatttcTAG--------------------------------------------------------------------------CCTACATCATATA----CCTCTTTATGCC----------------------------------------------------AATGCAGTAGTA--AACCAAAAT----------------gttaagggttt------------------tttgtttttttttttt---------a-------atggaggaatGGGCCCACCACAGCAAAAGGGCC-TGGGGCC---CACAA---------AAGTCATAAAGATGCCCTGGGTAGGGAAAACTTTCAGCTCAGGATGCAAACCTGACCCCTGAGGAAGAGGAGAACCTGGGCCAATGG-GAGCTGCTGAAGGGCCCCATGGCAGACAG-AATGGCCT-------GCCCC------TCTGCTGTGCTTGGTCACTCTGGAGCAGGGAGCTGGGAGCAGCCCAGAGTGGTGTGGTCTTGGTAC--ACTCTCCTGCAGGTCCAAAGGTGAGGTAGCTGGAGAC---CCAGTCAATGATGGTTTCTTCAGCAAGTTCTCTTAAAGAGG-------------ATCTCTGTGGCCCCTGCAATTAGGTATCCAGGACACAAAGTATTATAATGTATGTACATTATAATACAAAGAATTATAGCTCTCCTCCACTCAATTCTCCCTGCT-----------CATATCTCACAAAAAGATT-CTGTTTCATTGGTAAGTCATGTTACAAAGGGCAATGAAGATTTCATCTCTGCCTTTGTTACTCATGTGAGTGCTTACAGAACAGAAGCAGATTACA--GAGGCTAACT--GGTCATAGGCATTCTCCACCACTAGAATGTTCTCGTCAAGGCTGGCTGGCCACCA-GGAGTGCTTTAGAGGG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81181268 1789 + 108555830 TTAAGAATCTCTGT-----GGCCTGCAGGGTCTCCAG----------------------------------------TGATTTGGCAGATTAAAGGATTCTGTCTACTTCAAGTCCATCTATACCTA---------------------GTTTCATCCTACTCGAATCTTAAAGATCTGACC---AAA---------AAAAAAAAAAGGCCTTTTCCAGAGGTT-------CTGGAAGCTCTAGAACCCTATGCCAGATAGAAGTGTTGCGCTCATTGAACTAGGTGAACTAGGCAGGAAAATTCTCCTAATATCAGGCACT--GAACAGAATTTCCCAAGAACTCCAGGCTACCTTC---ATTGTT---TTTAGAAAGGAGAATACTATGGCACTTGCAGCCACCTACCCATTGACT-CCTCTTCCTCAGAAGAGATTGTGTCTGATGACACACTC--CGCC----TGGTTTGGCTGCCATTCCTCCAGCCTCTTCTCCTGGGGCAGACACCTGAATGACAATTTCTGAATCACCCCTACCAGTTCAACTGAGATAATAAACTCATGATGAGTTACCTTTTGTTCCCTAATGAGAAGCTTAACGTTGCTCAAATTGTCAGTAAATAGAACCCAGCTTTGGCAAAAAATGAATGATGGAAA-----GAAAAAG-GGGGCAAGGGCATGTGGTCTAGTCTGGTGGTTCCGAATGAGACTTGGAGTCAGCAGTCTTGGTCTTGTTCCCAGCAGCCTCTCTGACTCACTTTGGGCAGATCGTGTTATGTTTGCTGAATGCTTTTTGGATCAGAAATGTGACTGTGGTTCACTTGGACTAGCATCCTGAGCACAAGTTGTT----AGGCACTTTGACTACAAATGCAC-----AAAA-----TATTGTCCACAGAGCAGGTGAGTTACTA----TCCTTTAAAGACAACTCTCAGATGTCTGTCATCTGCAAGGAAGGTGAATTTACAACAAGGCTG--------------------------------------------------------------------------------------------------------------------------------------------------GCTGTG------------------gaagcagacact---aagctgggactaggtg-------------------------------------gaaaagagatttcct-------gggagag---------------atggctgtgaaggct----------------------ctgaggaggag---ggagccagactagctggagacaggcccaatgtccttattgggcac---agcagccatagt------------------gcctaggagccatggcattttt--ggggtccatgacaa-----taat----tttattttaaaattggaagggtaaaatga---------------------------------------------at------ataataatttctag--------------------------------------------------------------------------cctacatcatata----cctctttatgcc----------------------------------------------------aatgcagtaata--aaccaaaat----------------gttaagggttt------------------tt--ttttttttttttttttttttaa-------atggaggaatgggcccaccacagcaaaagggcc-tggggcc---cacaa---------aagtcataaagatgccctgggtagggaaaactttcagctcaggatgcaaacctgacccctgaggaagaggagaaCCTGGGCCAACGG-GAGCTGCTgaagggctccatggcagacac-aatggcct-------gcccc------tctgctgtgcttggtcactctggagcagggagctgggagcagcccagagtggt---gtcttggtac--actctcctgcaggtccaaaggtgaggtggctggagac---ccagtcaatgatggtttcttcagcaagttctcttaaagagg-------------atctctgtggcCCCTGCAATTAGGTATCCAGGAAACAAAGTATTATAATGTATGTACATTATAATACAAAGAATTATAGCTCTCCTCCACTCAACTCTCCCTGCT-----------CATATCTCACAAAAAGATT-CTGTTTCACTGGTAAGTCATGTTACAAAGGGCAATGAAGATTTCATCTCTGCCTTTGATACTCACGTGAGTTCTTACAGAACAGAAGCAGATTACA--GACACTAACT--GGTCATAGGCATtctccaccactagaatgttctcgtcaaggctggctggccacca-ggagtgctttagaggg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111414905 1761 - 210400635 TT-AAAAAATCTGT-----GGCCAGCAGAATTTCTAG----------------------------------------TGATTTGGTAGATTAAAGGATTCTGTCTACTTAAAGTCCGTCTATACCCA-----------------------------------GAATCTTAAAGATCTGACC---aaaaaaaaaaaaaaaaaaaaaaaaCCTTTTCCAGAGATTCTGGGAGCTGGGAGCTCTAGAACCCTGCGCCAGATAGGAGCACTGACCTCAC---------TGAACTTGGCAGGAAGTTTCTTCTAATATCAGACACT--GGACAAAATTTCCCAAGAACTCCAGGCTACCTTCTTTATTGTT---TTTAGAAAGGAGAAAACAATAGCACCTGCCGCAACCTACCCATTGGCTCCCTATTCCTCAGAACAGAATGTATCTGAAGA-----------------CAGTTTGGCCATCATTCCTCCAGCCTCTTCTCCTGGGGCAGACACCTGAATGACAACTTATGAATCACCTCTACCAGTTCAACTGAGATAATAAACTTATGATGAGCTACCTTTTGTTTCCCAATAAGAAGCTTAATGTTGCTCGGATTGTCAGTAAATAGAACCCAGCTTTGGCAACAAATGAATGATGGAAA-----GAAAAAG-GAGGCAAGAGCATGTGGTCTAGTCTGGTGGTTCCATATGAGACTTGGTGTCAGCAGTCTTGATCTTATTCCCAGCAGCCTTTCTGACTCACTTTGGGCTGATCGTGTTGTGTTTGCTGGATGCCTTTTGGATCAGCACTGTGACTGTGGTTCATTTGGCCCAGCATCCTGAGCATGAGTTGTTAATGAGGCACTTTGACTGCAAATGCAG-----AAAATAAAGTATTGTCCACACACCAGGTGAGTTACTA----CTCTTTAAAAACAGTGATCAGATGTCTGTCATCTGCAAGGAAGATGAATTTATAACAAGGCTG--------------------------------------------------------------------------------------------------------------------------------------------------GCTGTG------------------gaagcagacact---aaactgggactaggtg-------------------------------------ggaaagagatttcct-------gggggag---------------atggctgtgaagg-t----------------------ctgaagcagaa---ggagccagtgtagctagggacagggccaatgtcctcattgggaac---agcaggcatagt------------------gcctaggagccatgacagtttt-aggggtccatgagaatattttaattttatttatcttaaaattggaagggc-aaatta---------------------------------------------at------ataatgatttctag--------------------------------------------------------------------------cctacatcatata----catctttatgcc----------------------------------------------------aatgcagtcata--atctaaaat----------------gttaagtactt------------------tt-----------------------t-------atggaggaatcggcccactacagcaaaagcacc-tggggcc---cacaa---------aagtcataaagatgccctgggcagggaaaaccttcagtgcaggatgcaaacctgacccctgaggaagaggagaagCTGGGCCAATGG-GAGCTGCTgatgggcctcatgccagacag-aacagcct-------gcccc------tctgctatgcttcttcact-----------ggcagggaatagcccagagtggtgtggtcttggtacaaactctcctgcaggtccaaaggtgtggtggctggaggc---ccagtcgattatgattccttcagcaagttctccaaaaagcc-------------atctctgtggcccctgcaATTAGGTATCCAGGAAGCAAAGTGTTA-----TACATACATTATAATACAAAGAATTATAGCTTTCCTCCACTCAGTTCTCCCTGCT----------GCATATCTCACAAAAAAAATGCTGTTTCATTGGTAAGTCACGTACAAAGGGGCAGTGAAAACTTCATCCCTGCCTTTGATACTCACACGAGTTCTTAGAGAACAGAAGCAGATTATA--GAGGTTAACT--CGTCATAGGCATtctccattactagaatgttctagtcaaggctggctggccagca-ggaatgatttagagag i calJac3.chr1 C 0 C 0 s mm10.chr19 38064060 1873 - 61431566 tt-gtgatcttcctgcctaggcctccacggagttgggatgcactaccatgcttgacCTAAAGTCTTAATTCTGGCCATGATTTGGTTGATTATTAAATCCTGTTTACCTAGAATACATCTATATCTAGGTATCTTCTTATCTAATTGTGTTTCCTTGTGCCCAAATCCTAGTGATCTAA-----AAT---------CATTAAAAATTATCTTTCCCTAAGTTA-------GTAGAAGCTCAGCAACCCGGAGCCATCTAAGAGACTTGGCC-------------TAAGCTGGGTAAGAAAACTCCCATAATGCCAGATGAT--AGACTTGATTTCCTAAGAACACCAAGCTACCTTT---TCCATT-------------------------CATTCACCCCCAACTAGTCCCCAGCT-GCTCTTCCTCAGAGAAGATTTCA-CTAGAAATATGCTC--AGCC----AGGAT--GTTGTCACTTC-CCAGCCTGGCCTCCTGTAGCAGACACCTGAACGGTGGTT--TGAGTCATCCTAGCCCTGTTAAATCAGATGACAAACTTGTGATGAGCCATCTTTTTTT--CTGGTAAGAAACCTCATGTTACTCAGTTTGTCAGTAAATGGTACCCAACTGTGTCAACAAAAGAATACTAGAGA-----GAAAAAGAAGGGCAAATGTTTGTGGTCTAGGCTGGTGGTTCCATGGGAGACTCAGTGTCAGCAATCTTGGTAGCATTCACAGCAACCTCCCTGACTTGCTTTGGGCCAGTCACATTTTGTTTTCTGGATGCTCCTCGGGCCAGAAATGCGACTGTGGTTTGCTGGGCTCAGCATTGTGAGCATGAGTTGCTGAGGAGGCATTTCAAGTACTAATGCAGGGATAAAAA-----CAGTATCCAGACAGCAGATGAGTAACTAACTGTCCTT-------GACCCTCTGATGTCTGTCAAGTACAAAGAAGATGCATTCATCACGGAGCTGTGGGTAC--------------------------------------------------------------GAGATTT-------------------------CTCTGGCTCT-----------------------------------GCAGAG------------------TAATAACACACTCCAGGGATGGAACAGGTTGTTTCAAGTGGATCTGTCAAGAGCTTTCTAGACTCATTGAAAAGAGATTGTCTCGTGTTGGGCAGAATGATTCCCCATCCTCAGGGCTGTGTCGGTTTGAGTTCCACTAGAAACAGACATTAAGATGGAACTGggagtggggtggggtggggtagggtgACGGATGCTTGTGAAGAACTAAGGCAGAAACTGTCAGCAAAGCTCATTAGTAGAGTGGGAGCCATGGCAATCTAAAAGGTTCCATGACACTGCTTTAAC----TTTAGTT----GTTGTCAAAGCAAAATGA---------------------------------------------ATAAAGAAACAAAAATAACAAG--------------------------------------------------------------------------TCCATCCCAGATGACTTCATCTTTATACC----------------------------------------------------CATGTAGTCATA-TATCTGAAA----------------------------------------------CT--TGCATAC--------------A-------ATACAGAAA------------AGCAAGAGTGCCGTGTGGCCACTCATAATGTGTGGCCAAATCACAATG-TGCCCTCAGTGAAAAGCACCTTCGGTATAAGATGCAGA------TCATGAGAAAGGGGAGAGGCCAGGTCtccgg---------------------------cag-aatagcccagctgtggtgtc------cctggt-tgccggctcact-----------ggctagcgggagtgtggagcagtgtgttcttggtaggaacacagtcacgaatctacaggtggctcagct-gagactgacaagccaggttcagtgcctgtagcaagttctcttgcagaa------------------ctctgacc----cacctctgtgtctgcAAAGTAAGGTATAA----------------GGAAACAAAACGTTATAGCTCTCCC--------TTCCCCGCAGG-----------ACCACCTTGTGAAGGAGTG-CTGTTTCACTCTCTTGATATAAAACGAGAGGCAACAAGGACTT--TTGATGTTTTTAATGCTCCTGTGAATTCTTAGTAAATGGACTTGTGTTAGAATGGAGTTGTTTAGGGTCACATGCGTTCTCTGTTATTGGAATAATGC--TCTGGGCTGGCTGGACCCTA-TGGTTGTATTAGAGGG i mm10.chr19 I 103 I 127 s canFam3.chr1 35304345 2095 - 122678785 -TAGACGTCTTTGT-----GGCCTGCAGGATCCCTTA----------------------------------------ATATTTGTTTCCTTATAGGATG-TGTACATCTAAGGTCCATTTAGACCTA---------------------GTTTCGTCCTACTCAAACTTAAAGGGTCAGACA---AAT-------------------TGCCTCTCCCAGGTATT-------CTAAAGGCCCTAGCACCCTGCACCAGTTAGAAGGACTGGCCTCAC---------TGAACTGGGCAGGAAAATTCTCATAATGCCAAACACTAGAGATATAATTCCCCAAGAATTCCAAGCTACCTTC---TTCATTCCCCTTGGAAAGGTGCACAAAATGGTGCCTGCATTCCTCCAAACATTTGCT-CTTCTTCCTCGGGGTAGGTTGTACCCGAGGACACACACTGAGCC----TGGGCTGGTAGTTAGCCCTCCAGCCTGGCCTCCTGTGGCAGACACC----TGGTGATTTGTGAATCATCGGCCCCGCTTCAACTAAGATGA----------GCCAGCTACCTTTTGTTTCCCAGTGAGAAAC--ACTCTTACTCAGATTTTCAGTAAATAGTACCCAACTTTGGCAACAATTGAATGATGGGGAGGCGGGGCAGGG-AGCACAACAGAATGCGGTCTAGTCTAGTGGCTCCATGGGAGACTTGGTGTCAGCAGTCCTGGTCTCAGCACCAGCAGCCTGTCTGACTCACTGTGGGCACATCACATTGTGTTTGCTGGATGGTTTTTGGATCAGAAAT--GACTGTGGCTCACTTGGCTGAGTGTCTTGTACATGAGTTGTTAATGAAGCACTTTAACGGCAGATTCATGGATTAATA-----TGTTGTCCCCACAGCAGGTGACTAACTA----GCCTTTAGAGAAGACTGTCAGATATCTGTCAATGGTGAGGAAGATGGATTCATAATGGGATGGGGCTTACATTTCTGTAAGCCCAGTTACTGTGCACCCCACAAGTAGAATGAATACCTCCTAGTGGATTGTGAGGTCTCCTGGGATCACCAAGTCTCCTCACCCTCTGGGTCCTCCTCACCCTCTGGGGAATGATTTCCCTTGTCATGGCtgtgtcagtttgggtcctccaagaggaagaccct---aagcttggattaggtg-------------------------------------ggaaagagatttatt-------------------------------ggctgtgaagggt---------------------------aaggag---agagctggagtgactggggcccaggtcaacaggtctgttaggcat---agtagctcccat------------------gcctaggagccatgacattttt-aggggtccgtgagaatgttttcattttatttattctaaaatcagtag---aaaatgaggtgcctgggtcagtgtccaactcttagtttcaactcaggtcctgat------ctcagagtcctgagatcgagccctgcatcaggctgtgtgctcagcatggagtctgcttgagattctctctccctctccctctgctcctcctactccttctc----tctctttctttctctcctaaaataaataaataaatctttaaaacaaaatcagaagaaaataatgaatgtgataataacagataaaatcatcagccccgcctaaattgtgttcatctttatactaaaatagaatc--tttaatatgttc---------t-------aaggaggaacagacccactccggccaaagtgcc-cagggct---ctcga---------aagtcagaacgcggccccgGCTGGGGAGGGCCTTTGGGACAACAGAGAAGGCTGATACC-GGGGAGGGGAAgg--ccaggccaatggggagttactgaggagc-ccaggtcaggtggaaatggccc-------ctccccagcatcctgctacccttaggcacc-----------agctgagaccagcccggtgta-cgtgaccgtggcacaggcgc-ccgagggacccagaggtgaggcagccggaggctg-tcagtgagatacggtccctgcagcaagttcacccaaaggtggcatgagcagcccacctccacagcccccgcCAGGAAGTACCAAGGAAACAAAATAAGG---------------------------------GCTCTCCACCCGTCCCCTCCCATTGCTCCCCCTCCCCGCATATCTTGGCAAGGGACT-CTGTTTCATT-------------ACAAAGAGCAGTCAATACTTCCTCCCTGCCTTTGA----CACAGGAGCGCCCAGTGAGCAAAGGTGTGTTACG--GAGGCTCGCT--GGGTGCATATGTTCTCTATTAGCAAAGTATTCTTGGGGAGGCCG---GGCCCCCACAGCCTGGGTGTGGGG- i canFam3.chr1 C 0 C 0 a score=289387.000000 s hg38.chr9_GL383541v1_alt 99246 82 + 171286 tttccaagcttgggatatggaggagtgaccttccctccatatcagaggttctttgattctatcCAGTCTGTCATTCCGATTC s panTro4.chr9 68664686 82 + 137840987 tttccaagcttgggatatggaggagtgaccttccctccatatcagagattctttgattctatcTAGTCTGTCATTCCGATTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64820593 82 + 135191526 tttccaagcttgggatatggaggagtgaccttccctccatatcagaggttctttgattctatcCAGTCTGACATTCCGATTC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57856722 82 - 122973662 ttttcaagcttgggatatggaggagtgaccttccctccatatcagaggttctttgattctatcCAGTCTGACATTCTGATTC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79790278 82 + 112192347 ttttcaagcttgggatatggaggagtgaccttgcctccatatcagaggttctttgattctatTCAGTCTGACATTCTGATTC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80870263 82 + 112612857 ttttcaagcttgggatatggaggagtgaccttgcctccatatcagaggttctttgattctatTCAGTCTGACATTCTGATTC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76919280 82 + 107442819 TTTTCAAGCTTGGGATATGGAGGAGTGACCTCGCCTCCATATCAGAGGTTCTTTGATTCTATTCAGTCTGACATTCTgattc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81183057 82 + 108555830 ttttcaagcttgggatatggaggagtgaccttgcctccatatcagaggttctttgattctatTCAGTCTGACATTCTGATTC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111416666 82 - 210400635 ttttcgagcttgggacatggaggagggaccttccctgcatatcagagtttctttgattctatcCAGTCTGACATTCTGATTC i calJac3.chr1 C 0 C 0 s canFam3.chr1 35306440 74 - 122678785 ------AGCTTAG--TGGGGAGGCCTGCCCTTCCTTCCAGTTCAGAGGTCCTCTGATTTGATTCAGTCTGACATTCTGATTC i canFam3.chr1 C 0 I 186 e mm10.chr19 38065933 127 - 61431566 I a score=1974599.000000 s hg38.chr9_GL383541v1_alt 99328 588 + 171286 TTCCTTTAAAATTCCTGCCCAGAGGTGGCAAAGTGGAG--CCAACAGTGGTTTCCAGCCTGCAGATATGTTTATTTGGCGCATACAAAG--TTTAAAAAAATATGGTGGGGAGtgttaggcgttgaattgtgcacagtcaaaattcaaatgttgaagtcctaa---------------------cccccaggactt-agaatgtgaccttgcttggacata-gatgggtgcagaggtcattagctaagatgaggtcatgctggagtagggtgggcctccaatccaatatgaccgcagtccttattaaa---------------aggggaactttgggcacagagagaaatgtacacagggagaatgccatgtaaagataaaggcagaggccttcaagccaaggaatgccaaagattgccagcacaccaccagaagccgggagagaggcccagaacaaatccttccctcacggccctgagaaggaacaatccctgctgacaccttgatccttgacttctggactccagaactgtga--ggcaatacatgtgtgttgctgaagcctcccactttgcagtattttgtgacagcagccctagcaaac-caCACAGGAAGCATCCCTTAAAAATGGAT s panTro4.chr9 68664768 588 + 137840987 TTCCTTTAAAATTCCTGCCcagaggtggcgaagtggag--cctacagtggtttccagcctgcagatatgtttatttggcgcatacaaag--tttaaaaaaatATGGTGGGGAGtgttaggcgttgaattgtgcacagtcaaaattcaaatgttgaagtcctaa---------------------cccccaggactt-agaatgtgaccttgcttggacata-gatgggtgcagaggtcattaggtaagatgaggtcatgctggagtagggtgggcctccaatccaatatgaccgcagtcctgattaaa---------------aggggaactttgggcacagagagaaatgtacacagggagaatgccatgtaaagataaaggcagaggccttcaagccaaggaatgccaaagattgccagcacaccaccagaagccgggagagaggcccagaacaaatccttccctcacggccctgagaaggaacaatccctgctgacaccttgatccttgacttctggactccagaactgtga--ggcaatacatgtgtgctgctgaagcctcccactttgcagtattttgtgacagcagccctagcaaac-caCACAGGAAGCATCCCTTAAAAATGGAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64820675 588 + 135191526 TTCCTTTAAAATTCCTCCCcagaggtggcaaagtggag--cctacagtggtttccagcctgcagatatgtttatttggcgcttacaaag--tttaaaaaaatATGGTGGGGAGtgttaggcgttgaattgtgcacagtcaaaattcaaatgttgaagtcctaa---------------------cccccaggactt-agaatgtgaccttgcttggacata-gatgggtgcagatgtcattagttaagatgaggtcatgctggagtagggtgggcctccaatccaatatgactgctgtccttattaaa---------------aggggaattgtgggcacagagagaaatgtacacagggagaatgccatgtaaagataaaggcagaggacttcaagccaaggaatgccaaagattgccagcacacccccagaagcttggagagaggtccaggacaaatccttccctcatggccctgagaaggaacaacccctgctgacatcttgacccttgacttctggactccagaactgtga--ggcaatacatgtgtgttgctgaagcctaccactttgcaggattttgtgacagcagccctagcaaac-caCACAGGAAGCATCCCTTAAAAATGGAC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57856804 585 - 122973662 TTCCTTTAAAATTCCTTCCCAGAGGTGGCAAAGTGGAG--CCTACAGTGGTTTCCAGACTGTAGATATGTTTATTTGGCACATACGAAG--TTTAAAAAAATATGGTGGGGAGtgttaggcgttgaattgtgcacacccaaaactcaaatgtttaagtcctaa---------------------cccccaggactt-agaatctgaccttgcttggacata-gatgggtgcagatgtcattagttaagatgaggtcatgctggagtagggtgggcctccaatccaatatgaccactgtccttattaaa---------------aggggaactttgggcacagagagagatgtacacagggagaatgccatgtaaagataaaggcagagaccttcaagccaagaaatgccaaagattgccagcacaccaccagaagcttggagagaggcccaggaccaatccttccctcatggccctgagaaggaac---ccctgctgacaccttgatccttgacttctggactccagaactgtga--ggcaatacatgtgtgttgctgaagcctcccactttgcagtattttgtgacagcagccctagcaaac-caCAAAGGAAGCATCCCTTAAAAATGGAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79790360 588 + 112192347 TTCCTTTAAAATTCCTCCCCAGAGGTGGCAAAGTGGAG--CCTACAGTGGTTTCTAGCCTGTAGATATGTTTATTTGGCACATACGAAG--TTTAAAAAAATATGGTAGGGAGtgttaggtgttgaattgtgcacactcaaaattcatatgttgaagtcctaa---------------------cccccaggactt-agaatgtgaccttgcttggacaca-gatgggtgcagatgtcattagttaagatgaggtcatgctggagtagggtgggcctccaatccaatatgaccgctgtccttattaaa---------------aggggaactttgggcacagagagagatgtacacggggagaatgccatgtaaagataaaggcagagaccttcaagccaaggaatgccaaagattgccagcacaccaccagaagcttggagagaggcccaggaccaatccttccctcacggccctgagaaggaacaacctctgctgacaccttgatccttgacttctggactccagaactgtga--ggcaatacatgtgtgttgctgaagccttccattctgcagtattttgtgacagctgccctagcaaac-caCACAGGAAGCATCCCTTAAAAATGGAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80870345 588 + 112612857 TTCCTTTAAAACTCCTCCCCAGAGGTGGCAAAGTGGAG--CCTACAGTGGTTTCTAGCCTGTAGATATGTTTATTTGGCACATACGAAG--TTTAAAAAAATATGGTAGGGAGtgttaggtgttgaattgtgcacactcaaaattcatatgttgaagtcctaa---------------------cccccaggactt-agaatgtgaccttgcttggacaca-gatgggtgcagatgtcattagttaagatgaggtcatgctggagtagggtgggcctccaatccaatatgaccgctgtccttattaaa---------------aggggaactttgggcacagagagagatgtacacggggagaatgccatgtaaagataaaggcagagaccttcaagccaaggaatgccaaagattgccagcacaccaccagaagcttggagagaggcccaggaccaatccttccctcacggccctgagaaggaacaacctctgctgacaccttgatccttgacttctggactccagaactgtga--ggcaatacatgtgtgttgctgaagccttccattctgcagtattttgtgacagctgccctagcaaac-caCACAGGAAGCATCCCTTAAAAATGGAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76919362 587 + 107442819 ttcctttaaaattccTCCCCAGAGGTGGCAAAGTGGAG--CCTACAGTGGTTTCTAGCCTGTAGATATGTTTATTTGGCA-ATacgaag--tttaaaaaaatatggtaGGGAGTGTTAGGTGTTGAATTGTGCAcactcaaaattcatatgttgaagtcctaa---------------------cccccaggacTT-AGAATGTGACCTTGCTTGGACACA-GATGGGTGCAGATgtcattagttaagatgaggtcatgctggagtagggtgggcctcCAATCCAATATGACCGCTGTCCTTATTAAA---------------AGGGGAACTTTGGGCACAGAGAGAGATGTACACGGGGAGAATGCCATGTAAAGATAAAGGCAGAGACCTtcaagccaaggaatgcccaaGATTGCCAGCACACCACCAGAAGCTTGGAGAGAGGCCCAGGACCAATCCTTCCCTCACGGCCCTGAGAAGGAACAacctctgctgacaccttgatccttgacttctggactccagaactgtga--ggcaatacATGTGTGTTGCTGAAGCCTTCCATTCTGCAGTATTTCGTGACAGCTGCCCTAGCAAAC-CACACAGGAAGCATCCCTTAAAAATGGAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81183139 589 + 108555830 TTCCTTTAAAATTCCTCCCCAGAGGTGGCAAAGTGGAG--CCTACAGTGGTTTCCAGCCTGTAGATATGTTTATTTGGCACATACGAAG--TTTAAAAAAATATGGTAGGGAGtgttaggcgttgaattgtgcacactcaaaattcatatgttgaagtcctaac--------------------cccccaggactt-agaatgtgaccttgcttggacaca-gatgggtgcagatgtcattagttaagacgaggtcttgctggagtagggtgggcctccaatccaatatgaccgctgtccttattaaa---------------aggggaactttgggcacagagagagatgtacacggggagaatgccacgtaaagataaaggcagagaccttcaagccaaggaatgccaaagattgccagcacgccaccagaagcttggagagaggcccaggaccaatccttccctcacggccctgagaaggaacaacccctgctgacaccttgatccttgacttctggactccagaactgtga--ggcaatacatgtgtgttgctgaaacctcccattttgcagtattttgtgacagctgccctagcaaac-caCACAGGAAGTATCTCTTAAAAATGGAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111416748 563 - 210400635 TTCCTATAAAATTCCTCCC-------------------------CAGTGGTTTCCAGCCTGTAGATATGTTTATTTGGCACATACCAAG--TTTAAAAGATTATGGTGTGGAGtattatgtgttgaattgtgcactctcgaaattcaaatgttaaagtcctaa---------------------cctccaggacttcagaatgtgaccttactcggacgta-gatgggtgcagatgtaatttgttaagatgagatcatgctggaatagggtgggcctccaatccaatatgactgctgtccttattaaa---------------aggggaactttgagcacagagag--atgcccacagggagaacgccatgcaaagataaaggcagagcccttcaagccaaggaatgccaaagattgccagtgcaccaccagaagcttggagagaggcaaagaaccaatccttccctcatgaccctgagaaggaacaaac-ctgctgacaccttgatccttgacttctggactccagaaccgtga--gacaacacatgtgtgttgctgaagcctcccactttgtggtactttgtgacagcagctctagcaaac-catacaGGCAGCATCCCTTAAAAATGTTT i calJac3.chr1 C 0 I 308 s canFam3.chr1 35306700 606 - 122678785 TTTGTTTAACATCCCTTCCCAGAGTCAGCAAAGTGGGAGTCCGTCAGCTGTTTCCAGCCTGCAGATATGCTTATTTGGCATATACAGAATTTTTAAAAAGTTGCGGTGGTGGGtgttaccggttgaattgtatttcctcaaaac-catatgcccaagtcctcaccactacaaccaccaccacctcccctggtacttcagaatgtgaccttatttggtggtagggttgttgcagatg----taattaacatgaggtcatactgaagta-----ggtccctaatccagcatgactggtgtctttgtaaaagtcattgggaggatgggggtggatttagacacagagagacatgtgcagagagagaataccatgtgaacatgaaggtgaagatctcttagccaagaaaagccaaag-ttgccagccagccaccagattccagaagagagccttggaaccaat-ttaccttgactgccctcagaagaaacaatc-ctgctgacactttgatctggaacttccagcctcctgcattgggattaaaaatccatttctgttg--------------tttgtgatacttcattatagcaacgctagcagactcagacaGGGGGTATCATTTTTAAATGGAT i canFam3.chr1 I 186 C 0 e mm10.chr19 38065933 127 - 61431566 I a score=514489.000000 s hg38.chr9_GL383541v1_alt 99916 163 + 171286 AGATTTGCCGTGAAAACCTGAATTCCAGGCTAGGATGGGGAAAGCCTGCAGCATGGGGCTGGGTGCC-GGGCATCCGCTGC----AGTAGACCCTGCTCTCTCAGGG--AGGCTGGAGAAC---ATGGGGGTGAGGGGCCAGGCTTCTCACCCCAAGCCGGTTATTGCCGCAT s panTro4.chr9 68665356 163 + 137840987 AGATTTGCCGTGAAAACCTGAATTCCAGGCTAGGATGGGGAAAGCCTGCAGCATGGGGCTGGGTGCT-GGGCATCCGCTGC----AGTAGACCCTGCTCTCTCAGGG--AGGCTGGAGAAC---ATGGGGGTGaggggccaggcttctcaccccaagccggttattgccgcat i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64821263 163 + 135191526 AGATTTGCCATGAAAACCTGAATTCCAGACTAGGATGGGGAAAGCCTGTAGCATGGGGCTGGGTGCT-GGGCATCCGCTGG----AGTAGACCCTGCTCTCTCAGGG--AGGCTGGAGAAC---ATGGGGGTGaggggccaggcttctcaccccaagccggttattgccgcat i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57857389 163 - 122973662 AGATTTGCCGTCAAAACCTGAATTCCAGACTAGGATGGGGAAAGCCTGCAGCATGGGGCTGGGTGCC-GGGCATCTGCTGG----AGTAGACCCTGCTGTCTCAGGG--AGGCTGGAGAAC---ACGGGGGTGaggggccaggcttctcaccccaagccggttattgccgcat i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79790948 161 + 112192347 AGATTTGCCATGAAAACCTGAATTCCAGACTAGGATGGGGAAAGCCTACAGCACGGGGCTGGATGCC-GGGCATCCACTGG-----GTAGGCCCTGCTCTCTCAGGG--AGGctggagaac---acaggggtga-gggccaggcttctcaccccaagccggttattgccgcat i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80870933 161 + 112612857 AGATTTGCCATGAAAACCTGAATTCCAGACTAGGATGGGGACAGCCTGCAGCACGGGGCTGGATGCC-GGGCATCCACTGG-----GTAGGCCCTGCTCTCTCAGGG--AGGCTGGAGAAC---ACAGGGGTGA-gggccaggcttctcaccccaagccggttattgccgcat i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76919949 161 + 107442819 AGATTTGCCATGAAAACCTGAATTCCAGACTAGGATGGGGAAAGCCTGCAGCACGGGGCTGGATGCC-GGGCATCCACTGG-----GTAGGCCCTGCTCTCTCAGGA--AGGCTGGAGAAC---ACGGGGGTGA-GGGCCAGGCTTCTCACCCCAAGCCGGTTATTGCCGCAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81183728 161 + 108555830 AGATTTGCCATGAAAACCTGAATTCCAGACTAGGATGGGGAAAGCCTGCAGCACGGGGCTGGATGCC-GGGCATCCACTGG-----GTAGGCCCTGCTCTCTCAGGG--AGGCTGGAGAAC---ACGGGGGTGA-GGGCCAGGCTTCTCACCCCAAGCTGGTTATTGCTGcat i chlSab2.chr12 C 0 I 1139 s calJac3.chr1 111417619 163 - 210400635 AGATTTTCTGTGAAAACCTGAATTCCAGACTAGGATGGGGAAAGCCTACAGCACCGACCTGGGTGCT-GGGCATCCACTGG----AGTAGACCCTGCTCTCTCAGGG--AGGctggagaac---atggaagcgagtggccaggcttctcatcccaagccagttactgccacat i calJac3.chr1 I 308 C 0 s canFam3.chr1 35307306 160 - 122678785 AGATGTGCTATGAAAATTTATATTTTGAGCTTCAGTGGGAAAAGCCTACGGCACCGGGCTGGATGTCGGGGCACCAGCTGGGAGCAGAGGGATGGATGCACTCAGTGTTGGGCCAGAGAACCTAACCCGTGCAg-gggctgccactcttaccca------------gccgcgt i canFam3.chr1 C 0 C 0 e mm10.chr19 38065933 127 - 61431566 I a score=1235341.000000 s hg38.chr9_GL383541v1_alt 100079 368 + 171286 AAGAATATGGGCCTAGGACTATCAGATGTTTTTATTTTTCCAGATAAGCTTGATTTCTGTTTCTCGATGTGGGGGAAA-TATGATTTCAAATACTGGCTACTAATTTaccactctctattttctccctgactcaatcaacttcactcatacacttaatctggctgcctcctctgagaatttgagtttgtaatctctgTTTATTCACTGTTGTGTGGTTTGGCAAAACGATAAGGTAAACTATATTCAAAGA----AGATTATTCAGGGGATTCAGGATGTTGAACAACTTGCCACCAGGAGAAAGTGAGCTTTGACCTGTCCAT-TTTTCCCTTCTGCCATGTTGAGATGAGGACCTTTCTgagaccatgtctg s panTro4.chr9 68665519 368 + 137840987 aagaatatgggcccaggactatcagatgtttttatttttccagataagcttgatttctgtttctcgatgtgggagaaa-tatgatttcaaatgctggctactaatttaccactctctattttctccctgactcaatcaacttcactcatacacttaatctggctgcctcctctgagaagttgagtttgtaatctctgTTTATTCACTGTTGTGTGGTTTGGCAAAACGATAAGGTAAACTATATTCAAAGA----AGATTATTCAGGGTATTCAGGATGTTGAACAATTTGCCACCAGGAGAAAGTGAGCTTTGACCTGTCCAT-TTTTCCCTTCTGCCATGTTGAGATGAGGACCTTTCTgagaccatgtctg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64821426 368 + 135191526 aagaatatgggcccaggactatcagatgtttttatttttccagataagcttgatttctgtttcttgatgtgggggaaa-tatgatttcaaatgctggctactaatttaccactctctattttctccctgactcaatcaacttcactcatacacttaatctggctgcctcctctgagaatttgagttcgtaatctctgTTTATTCACTGTTGTGTGGTTTGGCAAGAAGATAAGGTAAACTATATTCAAAGA----AGATTATTCAGGGGATTCAGGATGTTGAACAACTTGCCACCAGGAGAAAGTGAGCTTTGACCTGTCCAT-TTTTCCCTTCTGCCATGTTGAGATGAGGACCTTTCTGAGACCATGCCTG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57857552 358 - 122973662 aagaatatgggcccaggactatcagatgtttttatttttccagacaagcttgatttctgtttcttgatgtgGGGGAAA-TATGATTT----------CTACTAATTTACCACTCTCTATTTTCTCCCTGACTCAATCAACTTCACTCGTACACTTAATCTGGCTGCCTCCTCTGAGAATTTGAGTTCGTAATCTCTGTTTATTCACCGTCGTGTGGTTTGGCAAGACGATAAGGTAAACTATACTCAAAGA----AGATTATTCAGGGGATTCAGGGTGTTGAACAACTTGCCACCAGGAGAAAGTGAGCTTTGACCTGTCCAT-TTTTCCCCTCTGCCGTGTTGAGATGAGGACCTTTCTGAGACCATGTCTG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79791109 369 + 112192347 aagaatatgggcccagcactatcagatgtttttatttttccagacaagcttggtttctgtttctcaatgtggggaaaagtaagatttcaaatgctagctactaatttaccactctctattttctccctgactcaatcaacttcattcatacacttaatctggctgcctcctctgcgaatttgagttcgtaatctctgTTTATTCACTGTTGTGTGGTTTGGCAAGACGATAAGGTAAATTATATTCAAATA----AGATTCTTCAGGGGATTCAGGGTGTTGAACAACTTGCCATCAGGAGAAAGTGAGCTTTGCCCTGTCCAT-TTTTCCCCTCTGCCATGTTGAGATGAGGACCTTTCTGAGACCATGTCTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80871094 369 + 112612857 aagaatatgggcccagcactatcagatgtttttatttttccagacaagcttggtttctgtttctcaatgtggggaaaagtaagatttcaaatgctagctactaatttaccactctctattttctccctgactcaatcaacttcattcatacacttaatctggctgcctcctctgcgaatttgagttcgtaatctctgTTTATTCACTGTTGTGTGGTTTGGCAAGACGATAAGGTAAATTATATTCAAATA----AGATTCTTCAGGGGATTCAGGGTGTTGAACAACTTGCCATCAGGAGAAAGTGAGCTTTGCCCTGTCCAT-TTTTCCCCTCTGCCATGTTGAGATGAGGACCTTTCTGAGACCATGTCTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76920110 369 + 107442819 AAGAATATGGGCCCAGCACTatcagatgtttttatttttccagacaaGCTTGGTTTCTGTTTCTCAATGTGGGGAAAAGTAAGATTTCAAATGCTAGCTACTAATTTACCACTCTCTATTTTCTCCCTGACTCAATCAACTTCATTCATACACTTAATCTGGCTGCCTCCTCTGAGAATTTGAGTTCGTAATCTCTGTTTATTCACTGTTGTGTGGTTTGGCAAGACGATAAGgtaaattatattcaaata----agGTTATTCAGGGGATTCAGGGTGTTGAACAACTTGCCATCAGGAGAAAGTCAGCTTTGACCTGTCCAT-TTTTCCCCTCTGCCATGTTGAGATGAGGACCTTTCTGAGACCATGTCTG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81185028 369 + 108555830 aagaatatgggcccagtactatcagatgtttttatttttctagacaagcTTGGTTTCTGTTTCTCAATGTGGGGAAAAACAAGATTTCAAACGCTAGCTACTAATTTaccactctctattttctccctgactcaatcaacttcattcatacacttaatctggctgcctcctctgagaatttgagttcgtaatctccgTTTATTCACTGTTGTGTGGTTTGGCAAGACGATAAGGTAAATTATATTCAAATA----AGATTATTCAGGGGATTCAGGGTGTTGAACAACTTGCCATCCGGAGAAAGTGAGCTTTGACCTGTCCAT-TTTTCCCCTCTGCCATGTTGAGATGAGGACCTTTCTGAGACCATGTCTG i chlSab2.chr12 I 1139 C 0 s calJac3.chr1 111417782 370 - 210400635 gcgaatatgggcccaatgctatcagatatttttatttttccagacaagcttgatttctgtttctcgatgctggggaaa-tatgacttcaaatgctggctactaatttactactctctattttctccttgactcagtcaacttcactcatatacttaatctaactggctcctctgagcatttgagtttttaatttctgTTTATTCACTGTTGTGTGGTTTGGCAAGACCATAAGGTAAATTATATTCAAACAAAGGAGATTATTCAGGGGATTCAGGATATTGAGC---TTGCCACCAGGAGAGCGTGAGCTTTGATCTGTACATCTTTTCCCCACTGCCGTGTTGAGGTAAGGACCTTTTTGAGACAATATACA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35307466 348 - 122678785 gagaataggggctcagtgccatctgattctctgagtttcacagagaagcttgttttctatttctcattgctgatgaaa-tatgatttcaaatgttggcaatgaatCGATCACTCGAT-TTTTCCCCTGGACCCACTCCACTTCAGTGGTATACTTGATCCGGCTGGC-CCTCTGGTCATCTGAGCCTGTGATCTTTATTTACTCACAGTTGCATGTCTTGGCAAGATGCTAAGAGAAATTATAGTTAAACA----AGGG-----AGATGGTTCAGGAGGTTGAACAATTTGCCGCCAGGAGAAA-CAAGCCTTGATTTATTCAC-CTCTCTCCTCTGCCATGTTGAGGTGAGGACCTTTCTG------------ i canFam3.chr1 C 0 I 140 e mm10.chr19 38065933 127 - 61431566 I a score=941208.000000 s hg38.chr9_GL383541v1_alt 100447 340 + 171286 --tacattaaataaccatgtgttgagagcccaccacataccgggctatgtactagatacacagtaaatgtccagtgtataaatgcatATGCTCCTCCTAATATTTGTTTCTGCTCTGCTCTTCATAATGGAGAAAAGGTAttctttatttcc-------------------------------------------------------------------------------------------------------ttattttattttttggagacagggtcttgcttatcacccaggctggagtacagtggtgtgatcatagcttactgcaaccttgaactcataggctcaagtgattctcctgcctcagcctccctaatagctaagaccagaggtgcatgctaccatgcccagctaattttaagaaag--cttttctgtagagaca s panTro4.chr9 68665887 340 + 137840987 --tacattaaataaccatgtgttgagagcccaccacataccgggctatgtactagatacacagtaaatgtccagtgtataaatgcatATGCTCCTCCTAATATTTGTTTCTGCTCTGCTCTTCATAATGGAGAAAAGGTAttctttatttcc-------------------------------------------------------------------------------------------------------ttattttattttttggagacagggtcttgcttatcacccaggctggagtacagtggtgtgatcatagcttactgcaaccttgaactcataggctcaagtgattctcctgcctcagcctccctaatagctaagaccagaggtgcatgctaccatgcccagctaattttaagaaag--cttttctgtagagaca i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64821794 345 + 135191526 --TAcattaaataaccatttgttgagagcccaccacataccgggctatgtactagatacACAGTAATTGTCCAGTGTATAAATGCATATGTTCCTCCTAATATTTTTTTCTGCTCTGCTCTTCATAATGGAGAAAAGGTATTCtttatttcctta--------------------------------------------------------------------------------------------------ttttattttattttttggagacagagtcttgcttatcacccaggctggagtacagtggtgtgatcatagcttactgcaaccttgaactcataggctcaagtgattctcctgcctcagcctccctaatagctaagatcagaggtgcatgctaccatgcccagataattttaagaaag--cttttctgtagagaca i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57857910 336 - 122973662 --TAcattaaataaccatttgttgagggcccaccatataccgggctatgtgctagatacaaagtaaacgtccagtgtataaaTGCATATGCTCCTCCTAATATTTTTT-----TCTGCTCTTTATCATGGAGAAAAGGTATTC----TTGCCTTA--------------------------------------------------------------------------------------------------ttttattttattttttggagacagggtcttgcttatcacccaggctggagtacagtggtgtgatcacagcttactgcaaccttgaactcatgggctcaagtgattctcctgccacagcctccccaatagctaagaccagaggtgcatgctaccatgcccagctaattttaagaaag--tttttctgtagagaca i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79791478 337 + 112192347 --TAcattaaataaccatttgttgagggcccaacacataccgggctatgtgctagatacaaagtaaacatccagtgtataaaTGTATATGCTCCTTCTAATATTTTTT-----TCTGCTCTTCATAATGGAGAAAAGATAttc----ttgtctta--------------------------------------------------------------------------------------------------ttttattttattttttggagacagggtctcgcttatcacccaggctggaggacagtggtgtgatcacagcttactgcaaccttgaactcatgggctcaagtgattctcctgattcagcctccctgatagctaagaccagaggtgcatgctaccatgcccagctaattttaagaaag-ttttttctgtagagaca i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80871463 337 + 112612857 --TAcattaaataaccatttgttgagggcccaccacataccgggctatgtgctagatacaaagtaaacatccagtgtataaATGCATATGCTCCTTCTAATATTTTTT-----TCTGCTCTTCATAATGGAGAAAAGATAttc----ttgtctta--------------------------------------------------------------------------------------------------ttttattttattttttggagacagggtctcgcttatcacccaggctggaggacagtggtgtgatcacagcttactgcaaccttgaactcataggctcaagtgattctcctgattcagcctccctgatagctaagaccagaggtgcatgctaccatgcccagctaattttaagaaag-ttttttctgtagagaca i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76920479 338 + 107442819 --TACATTAAATAACCATTTGTTGAGGGCCCACCACATACCGGGCTATGTGCTAGATACAAAGTAAACATCCAGTGTATAAATGCATATGCtccttctaatatttttt-----tctgctcttcataatggagaaaaggcattc----tttcctta--------------------------------------------------------------------------------------------------ttttatttcattttttggagacagggtctcacttatcacccaggctggaggacagtggtgtgatcacagcttactgcaaccttaaactcatgggctcaagtgattctcctgattcagcctccctaatagctaaGACCAGAGGTGCATgctaccttgcccagctaattttaagaaagtttttttctgtagagaca i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81185397 336 + 108555830 --TAcatcaaataaccatttgttgagggcccaccacatgctgggctatgtgctagatacAAAGTAAACGTCCAGTGTATAAATGTATATGCTCCTTCTAATATTTTTT-----TCTGCTCTTCATAATGGAGAAAAGGCAttc----tttcctta--------------------------------------------------------------------------------------------------ttttattttattttttggagacagggtctcgcttatcacccaggctggagtacagtggtgtgatcacagcttactgcaaccttgaactcatgggctcaagtgattctcctgattcagcctccctaatagctaagaccagaggtgcatgctaccatgcccagctaattttaagaaag-ttttttctgtaaagac- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111418152 434 - 210400635 GTTATGTTACATAACTGTATATTGAGAGCCCACCACATACCGGGCTGTGTGCTAGATACAAAGTAAACGTCCAGTGTAT-AATGCATATGCTCTTCCTCATATTCTT------GCTGCTCTTCATAAAAGAGAAAAGGTATTC----TTtcttgaacttctgacctcaggtgatccgcccaccttggcctcccaaagtgctgagattacaggtgtgagccaccgcgcctggcTGAGAAAAGGTATTCtttctttcctattttaacttttggagacaggttctcacttgtcacccaggatggagtacagtggtgtgctcatagcttactgccaccttgaactcatgggctcgagtgattctcctgcctcagcctccctaataactaggaccagtgatgcatgcctccatgcccagctaattttaaggaag--tttttctgtagggaca i calJac3.chr1 C 0 I 299 e mm10.chr19 38065933 127 - 61431566 I e canFam3.chr1 35307814 140 - 122678785 I a score=331930.000000 s hg38.chr9_GL383541v1_alt 100787 111 + 171286 ggggtctcactatgttgcccaggctggtctcaagttcctggcctcaagcaatgctcccgcctcagcctcccaaagtgttgggattacaggcatgagtcactgcacctggcc s panTro4.chr9 68666227 111 + 137840987 ggggtctcactatgttgctcaggctggtctcaagttcctggcctcaagcaatgctcccgcctcagcctcccaaagtgttgggattacaggcatgagtcactgcacctggcc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64822139 111 + 135191526 ggggtctcactatgttgcccaggctggtctcaagttcctggcctcaagcaatgctcccgcctcagcctcccaaagtgttgggattacaggcatgagtcactgcacctggcc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57858246 111 - 122973662 ggggtctcactatgttgcccaggctggtctcaagttcctggcctcaagcaatgctcccgcctcagcctcccaaagtgttgggattacaggcatgagtcactgcacctggcc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79791815 110 + 112192347 ggggtctcactatgttccccaggctggtctcaagttcctggcctcaagcaatgctcccgtctcagcctcccaaagtgttgggatta-aggcatgagtcactgcacctggcc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80871800 110 + 112612857 ggggtctcactatgttccccaggctggtctcaagttcctggcctcaagcaatgctcccgtctcagcctcccaaagtgttgggatta-aggcatgagtcactgcacctggcc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76920817 110 + 107442819 ggggtctcactatgttccccaggctggtctcaagttcctggcctcaagcaatgctcccgtctcagcctcccaaagtgttgggatta-aggcatgagtcactgcacctggcc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81185733 110 + 108555830 ggggtctctctatgttccccaggctcgtctcaagttcctggcctcaagcaatgctcccgtctcagcctcccaaagtgttgggatta-aggcatgagtcactgcacctggcc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111418885 109 - 210400635 ggggtttcaccatgttgaccaggatggtctcgatctcttgacctc--gtgatccacccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgtgcccgacc i calJac3.chr1 I 299 C 0 e mm10.chr19 38065933 127 - 61431566 I e canFam3.chr1 35307814 140 - 122678785 I a score=1181489.000000 s hg38.chr9_GL383541v1_alt 100898 315 + 171286 AGGAATTCTTATTAACCAGAAATTATGTCATGGAAATGAAGAT----ATTAAGCTGTAATTATTCTGAGCTTGTAAACAGAAAGGGCATTCTGTTGAAGCTGCATTGAATAGCACTTCTTTGTCATCACTCAAATGAATTCAG---------------AAAAAATTGCTAACAATGA---TAGCTTACCCTTTATACAAAACAGGCTATAGGGCAAGCATGGTTCTAGAATTGTGAATGG-------------CGTTG-----------TAAt--tgttagacagctacaatgtaccaggcacacgctaagcactttacatacatgactccatgtaatattc--a--ttgcctctatgaggaaagta s panTro4.chr9 68666338 315 + 137840987 AGGAATTCTTATTAACCAGAAATTATGTCACGGAAATGAAGAT----ATTAAGCTGTAATTATTCTGAGCTTGTAAACAGAAAGGGCATTCTGTTGAAGCTGCATTGAATAGCACTTCTTTGTCATCACTCAAATGAATTCAT---------------AAAAAATTGCTAACAATGA---TAGCTTACCCTTTATACAAAACAGGCTATAGGGCAAGCATGGTTCTAGAATTGTGAATGG-------------CATTG-----------TAAt--tgttagacagctacaatgtaccaggcacacgctaagcactttacatacatgactccatgtaatattc--a--ttgcctctatgaggaaagta i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64822250 315 + 135191526 AGGAATTCTTATTAACCAGAAATTATGTCATGGAAATGAAGAT----ATTAAGCTGTAATTATTCTGAGCTTGTAAACAGAAAGGGCATTCTGTTGAAGCTGCATTGCATAGCACTTCTCTGTCATCACTCCAATGAATTCAT---------------ACAAAATTGCTAACAATGA---TAGCTTACCCTTTATACAAAACAGGCTATAGGGCAAGCATGGTTCTAGAATTGTGAATGG-------------CATTG-----------TAAt--tgttagacagctacaatgtagcaggcacacgctaagcactttacatacatgactccatgtagtattc--a--ttgcctctatgaggaaagta i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57858357 314 - 122973662 AGGAATTCTTCTTAACCAGAAATTATGTCATGGAAATGAAGAT----ATTAAGCTATAATTATTCTGAGCTTGTAAAC-GAAAGGGCATTCTGTTGAAGCTTCATTGCATAGCACTTCTCTGTCATCACTCAAATGAATTCAT---------------ACAAAATTGCTAACAATGA---TAGCTTACCCTTTATACAAAACAGGCTATAGGGCAAGCATGGTTCTAGAATTGTGAATGG-------------CATTG-----------TAAt--tgttaggcagctacaatgtaccaggcacacgctaagcactttacatacatgactccatgtaatattc--a--ttgcctctatgaggaaagta i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79791925 315 + 112192347 AGGAATTCTTATTAACCAGAGATTATGTCATGGAAATGAAGAT----ATTAAGCTGTAATTGTTCTGAGCTTGTAAATAGAAAGGGCATTCTGTTGAAGCTGCATTGCATAGCACTTCTCTGTCATCACTCAAATAAATTCAT---------------ACAAAATTGCTAACAATGA---TAGCTTACCCTTTATACAAAACAGGCTATAGGGCAAGCATGGTTCTAGAATTGTGAATGG-------------CATTG-----------TAAt--tgttaggcagctacaatgtaccaggcacatgctaagcattttacatacatgactccatgtaatattc--a--ttgcctctatgaggaaagta i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80871910 315 + 112612857 AGGAATTCTTATTAACCAGAGATTATGTCATGGAAATGAAGAT----ATTAAGCTGTAATTGTTCTGAGCTTGTAAATAGAAAGGGCATTCTGTTGAAGCTGCATTGCATAGCACTTCTCTGTCATCACTCAAATAAATTCAT---------------ACAAAATTGCTAACAATGA---TAGCTTACCCTTTATACAAAACAGGCTATAGGGCAAGCATGGTTCTAGAATTGTGAATGG-------------CATTG-----------TAAt--tgttaggcagctacaatgcaccaggcacatgctaagcattttacatacatgactccatgtaatattc--a--ttgcctctatgaggaaagta i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76920927 315 + 107442819 aggaattcTTATTAACCAGAGATTATGTCATGGAAATGAAGAT----ATTAAGCTGTAATTGTTCTGAGCTTGTAAATAGAAAGGGCATTCTGTTGAAGCTGCATTGCATAGCACTTCTCTGTCACCACTCAAATAAATTCAT---------------ACAAAATTGCTAACAATGA---TAGCTTACCCTTTATACAAAACAGGCTATAGGGCAAGCATGGTTCTAGAATTGTGAATGG-------------CATTG-----------TAAT--TGTTAGGCAGCTACAATGTACCAGGcacatgctaagcactttacatacatgACTCCATGTAATATTC--A--TTGCCTCTATGAGGAAAGTA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81185843 315 + 108555830 AGGAATTCTTATTAACCAGAGATTATGTCATGGAAATGAAGAT----ATTAAGCTGTAATTGTTCTGAGCTTGTAAATAGAAAGGGCATTCTGTTGAAGCTGCATTGCATAGCACTTCTCTGTCATCACTCAAATAAATTCAT---------------ACAAAATTGCTAACAATGA---TAGCTTACCCTTTATACAAAACAGGCTATAGGGCAAGCATGGTTCTAGAATTGTGAATGG-------------CATTG-----------TAAt--tgttaggcagctacaatgtaccaggcacatgctaagcactttacatacatgactccatgtaatattc--a--ttgcctctatgaggaaagta i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111418994 322 - 210400635 AGGAATTCTTATTAACCAGAAATTATGTCATGAAAATAAAGAT----ATTAAGCTATAATTGTTCCGAGCTTGTAAATAGAAAGGGTGTTCTGTTAAAGCTGCATTGCATAGCA---CTCTATCATCACTTAAATCAATTCACTTGGGTCATCACTTAAATAAATTGCTGACAATGC---TGGC-TACCATTTATACAAAACAGGCTATATGGCAAGCCTGGTTCTAGAATTGTGAATGG-------------cattg-----------taa------taggcagccacgatgtgccaggcacacgctaagcattttacgtacatgactccatgtaatattc--a--tcacctctctgaggaaagta i calJac3.chr1 C 0 C 0 s mm10.chr19 38066060 329 - 61431566 AGAAATTCTTATGAAGCAGGCACTAGATCCTGAAAACGAAAATAAAAATTACAGTATATCTGTTCTGAGCTTATAAAGAGA--------TCTGTCCAAGCCACACCAAATAGCTCTTCTCCATCATAACCTAAATAAATGTAT---------------ACAAAGTTGTTAATAGTGATAGTAGCTGCCCCCTTATAAACCACAGACCACAGGACAAGTACAGTTCTAAATTCATAAATGG-------------CATTGCTGTTTTCTTATAATCAtgttgagcaattataaaatgtcaggcacacaataagcacttttcatacataatatcctttcatattc--attttaaccctacgaggaaagca i mm10.chr19 I 127 I 517 s canFam3.chr1 35307954 317 - 122678785 AGGGATTGTTGTTAATCAGGCACCGCATAATAAAAC--AAAAT----ATTAAGCTGTAATTGTTCTGAACTTATAAATAGAAAGGTCATTGTCGTGAAGCTACAACGCATCGCGTTCCTCCGTTGCCGC-------AGCTTAC--------------------GTTGCTAATAATGA---CAAC-CAGTCTTTGCACAAAACAGACAATGGGGAAGGCATGGTACCAGAATCATTAATGACATTCCTTTATTTCATTG-----------TAATTGtattagccagtcacaatgtgccaggcccacggtgagcactccacatgcgtaatctcatgtaatgcttgga--ccagctctgcgagggaagca i canFam3.chr1 I 140 C 0 a score=16785.000000 s hg38.chr9_GL383541v1_alt 101213 4 + 171286 tttg s panTro4.chr9 68666653 4 + 137840987 tttg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64822565 4 + 135191526 tttg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57858671 4 - 122973662 tttg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79792240 4 + 112192347 tttg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80872225 4 + 112612857 tttg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76921242 4 + 107442819 TTTG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81186158 4 + 108555830 tttg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111419316 4 - 210400635 tttg i calJac3.chr1 C 0 C 0 s canFam3.chr1 35308271 4 - 122678785 tttg i canFam3.chr1 C 0 C 0 e mm10.chr19 38066389 517 - 61431566 I a score=1140569.000000 s hg38.chr9_GL383541v1_alt 101217 332 + 171286 attgtcattctagagatcaggaaattgagacccagacatactcagaaacttgttcaaggtcacagggctagtaagaagtggagcaggattcaacctcatttctcttcaatgctaagtcaaggctgt----ctccattctgccacatggtttctgtgTTTCACCAAGAT-----------------GCCCCTAATGGAGGCCAG--------C--CTCTGGGTCCA---------GAGCCCACAAAGACC-TGCCAAGAGTGGTACCACACATTCACTCCTCCAAATTTCAGTGTCGATTGACTTGCATGCTATTAACAACACACAAATTGCCATATAGTTGGAATTCAAAATCTTAGTTTCACTCAAAAAACA s panTro4.chr9 68666657 332 + 137840987 attgtcattctagagatcaggaaattgagacccagacatactcagaaacttgttgaaggtcacagggctagtaagaagtggagcaggattcaacctcagttctcttcaatgctaagtcaaggctgt----ctccattctgccacatggtttctgtgTTTCACCAAGAT-----------------GCCCCTAATGGAGGCCAG--------C--CTCTGGGTCCA---------GAGCCCACAAAGACC-TCCCAAGAGTGGTACCACACATTCACTCCTCCAAATTTCAGTGTCGATTGACTTGCATGCTATTAACAACACACAAATTGCCATATAGTTGGAATTCAAAATCTTAGTTGCACTCAAAAAACA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64822569 330 + 135191526 attgtcattctagagatcaggaaattgagacccagacatactcagaaacttgttcaagatgtcagggctagtaagaagtggagcaggattcaacctcagttctcttcaatgctaagtcaaggctgt----ctccattctgccacatggtttctgtgTTTCACCAAGAT-----------------GCCCCTAATGGAGGCCAG--------C--CTCTGGGTCCA---------GAGCCCACAAAGACC-TGCCAAGGGTGGTACCACACATTCACTCCTCCAAATTTCAGTGTCGATTGACTTGCATGCTATTAACAACACACAAATTGCCATATAGTTGGAATTCAAAATCTTAGTTTCACTCAAAAA--A i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57858675 332 - 122973662 attgtcattctagagatcaggaaattgagacccagacatactcagaaacttgttcaaggtcacagggctagtaagaagtggagcaggattcaatctcagttctcttcaatgctaagtcaaggctgt----ctccattctgccacatggtttctgtgTTTCACCAAGAT-----------------GCCCCTAATGGAGGCCAG--------C--CTCTGCATCCA---------GAGCCCACAAAGACC-TGCCAAGAGTGGTACCACACATTCACTCCTCCAAATTTCAGTGTCGATTGACTTGCATGCTATTAACAACACACAAATTGCCATATAGTTGGAATTCAGAATCTTAGTTTCACTCAAAAAACA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79792244 332 + 112192347 attgtcattctagagatccggaaattgagacccagacatactcagaaacttgttcaaggtcacagggctagtaagaagtggagcaggattcaacctcagttctcttcaatgctaagtcaaggctgt----ctccattctgtcatatggcttctgtgTTTCACCAAGAT-----------------GCCCCTAACGGAGGCCAG--------C--CCCTGGGTCCA---------GAGCCCACAAAGACC-TGCCAAGAATGATACCACATATTCACTCCTCCAAATTTCAGTGTCGATTGACTTGCATGCTATTAACAATACACACATTGCCATATAGTTGGAATTCAAAATCTTAGTTTCACTCAAAACACA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80872229 332 + 112612857 attgtcattctagagatccggaaattgagacccagacatactcagaaacttgttcaaggtcacagggctagtaagaagtggagcaggattcaacctcagttctcttcaatgctaagtcaaggctgt----ctccattctgtcatatggcttctgtgTTTCACCAAGAT-----------------GCCCCTAACGGAGGCCAG--------C--CCCTGGGTCCA---------GAGCCCACAAAGACC-TGCCAAGAATGATACCACATATTCACTCCTCCAAATTTCAGTGTCGATTGACTTGCATGCTATTAACAATACACACATTGCCATATAGTTGGAATTCAAAATCTTAGTTTCACTCAAAACACA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76921246 332 + 107442819 ATTGTCATTCTAGAGATCCGGAAATTGAGACCCAGACATACTCAgaaacttgttcaaggtcacagggCTAGTAAGAAGTGGAGCAGGATTCAACCTCAGTTCTCTTCAATGCTAAGTCAAGGCTGT----CTCCATTCTGTCATATGGCTTCTGTGTTTCACCAAGAT-----------------GCCCCTAACGGAGGCCAG--------C--CCCTGGGTCCA---------GAGCCCACAAAGACC-TGCCAAGAGTGATACCACATATTCACTCCTCCAAATTTCAGTGTCGATTGACTTGCATGCTATTAACAATACACACATTGCCATATAGTTGGAATTCAAAATCTTAGTTTCACTCAAAACACA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81186162 332 + 108555830 attgtcattctagagatccggaaattgagacccagacatactcagaaacttgttcaaggtcacagggctagtaagaagtggaacaggactcaacctcagttctcttcaatgctaagtcaaggctgt----ctccattctgccacatggcttctgtgTTTCACCAAGAT-----------------GCCCCTAACAAGGGCCAG--------C--CCCTGGGTCCA---------GAGCTCACAAAGACC-TGCCAAGAGTGATACCACATATTCATTCCTACAAATTTCAGTGTCGATTGACTTGCATGCTATTAGCAATACACACATTGCCATGTAGTTGGAATTCAAAATCTTAGTTTCACTCAAAACACA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111419320 349 - 210400635 attgtcattctagagataaggaaattgagacccagacaaactccgaaacttgttcaaggttgcagggctagtaagaagtgcagcgggattcaacctcagttctcttcaatgctaagtcaaggccgt----ctccattctgccacatggtttctgtgTTTCACCAAGATGCCCCTAAGGGAGACCAGCCCCTAAGGGAGACCAG--------C--CCCTAGGTCCA---------GAGCCCACTAAGGCC-TGCCAGGAGTGGGATCACACATTCACCCCTCCTCGTTGCAGTGTTGATTGACCTTCATGCTATTAACGATACACAAATTACCAAATAGTTGGAATTCAAAATCTTAGTTTCACTCAAAAAACA i calJac3.chr1 C 0 C 0 s mm10.chr19 38066906 269 - 61431566 ATTCTTGTTCTAGAGA---------------CCTGACAAATTCATAAACCTGCTCAAGTCTTAGTAGCTCATCAAG---GAAATGGGACTCAAAGTCAGTTCCCTTCAATGGCAAACCAAAGCTCT----TTCCCAGTCTCCATATTGTTTC--TGTTTCA------------------------GCCTGTTGTGGGGGTTAG--------TAGCTCTGGGCCTGCCAGGTGATGTGATCACCAGAGTC-TATCAACAATGGCATCACAAGTTCAGACTCGCAGACCTTACC---------CCTGCCTTCCATCAT-----------------------------------TCTTAGGATCCCTCAAA---CA i mm10.chr19 I 517 C 0 s canFam3.chr1 35308275 324 - 122678785 gttctccctctagagatcaggacattgaagcctggagatgtccagtaacttacctgaggtcct------------------agcagggcttgacctcaggtcacctcaacgcccaatccaggctctCCTCCCCCTTCCTGCTTCCTGGCTACTCTCTTGCACCAAACT-----------------GCCTCTAACAGAGGTCGGGTGGTCGAC--CTGTGGGCCCA---------GAGCCCACGAAGGCCTTGCCAAGGGTGATGTCCCAAGTCCAACCTCCCGAATCCCAACCCTGTCTG---CATATTCTGTTAAAGAGGCAAAACTTGTAACCTAGTTTGAAGTCAACATGTTAGTTTCACTCAAAAAAAA i canFam3.chr1 C 0 I 108 a score=33565.000000 s hg38.chr9_GL383541v1_alt 101549 7 + 171286 CATGGTG s panTro4.chr9 68666989 7 + 137840987 CATGGTG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64822899 7 + 135191526 CATGGTG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57859007 7 - 122973662 CATGGTG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79792576 7 + 112192347 CATGGTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80872561 7 + 112612857 CATGGTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76921578 7 + 107442819 CATGGTG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81186494 7 + 108555830 CATGGTG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111419669 7 - 210400635 CATGGTG i calJac3.chr1 C 0 C 0 s mm10.chr19 38067175 7 - 61431566 CATAGTG i mm10.chr19 C 0 I 1 s canFam3.chr1 35308707 7 - 122678785 catggag i canFam3.chr1 I 108 I 102 a score=361790.000000 s hg38.chr9_GL383541v1_alt 101556 111 + 171286 ACATCTTGCATTAATTGTAAACATGTG--CAGGAGGGTCTCTCCATGCCCTTTTAAGAATAG-ATGGTAAG-CTTTGTCTTTGTGTGCTCTTCAGAGTCTTATGACTCAAATAAG s panTro4.chr9 68666996 103 + 137840987 ACATCTTGCATTAATTGTAAACATGTG--CAGGAGGGTCTCTCCATGCCCTTTTAAGAATAG-ATGGTAAG-CTTTGT------GTGCTCTTCAG--TCTTATGACTCAAATAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64822906 105 + 135191526 ACATCTTGCATTAATTGTAAACATGTG--CAGGAGGGTCTCTCCATGCCCTTTTAAGAATAG-ATGGTAAG-CTTTGT------GTGCTCTTCAGAGTCTTATGACTCAAATAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57859014 93 - 122973662 ACATCTTGAATTAATTGTAAACATGTG--CAGGAGGGTCTCTCCATGCCCTTTTAAGAATAG-ATGGTAAG-TTTTGT------G------------TCTTATGACTCAAATAAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79792583 105 + 112192347 AAATCTTGCATTAATTGTAAACATGTG--CAGGAGGGTCTCTCCATGCCCTTTTAAGAATAG-ATGGTAAG-CTTTAT------GTCCTCTTCAGAGTCTTATAACTCAAATAAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80872568 105 + 112612857 AAATCTTGCATTAATTGTAAACATGTG--CAGGAGGGTCTCTCCATGCCCTTTTAAGAATAG-ATGGTAAG-CTTTAT------GTCCTCTTCAGAGTCTTATAACTCAAATAAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76921585 104 + 107442819 ACATCTTGCATTAATTGTAAACATGTG--CAGGAGGGTCTCTCCATGCCCTTTTAAGAGTAG-ATGGTAAG-CTTTAT------GTCCTCTTCAGAGTCTTATAACTC-AATAAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81186501 105 + 108555830 ACATCTTGCATTAATTGTAAACATGTG--CAGGAGGGTCTCTCCATGCCCTTTTAAGAATAG-ATGGTAAG-CTTTAT------GTCCTCTTCAGAGTCTTATAACTCAAATAAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111419676 105 - 210400635 ATATCTTGCATAAATTGTAAACATGTG--CAGCAGGGTCTCTCTATTCTCTTTTAAGGATAG-ATGGTATG-CTTTGT------ATGCTCTTAAGAGTCTTATAACTCAAAAAAG i calJac3.chr1 C 0 I 305 s mm10.chr19 38067183 97 - 61431566 GCATTTGATGTATGTTGTGAAAATGTGTCCAGGTATGTCTTTCTATGCCCTTTAAATACAAGAACAGTAAGACTTGAT------G------------TATTATATCTCAAAGAAG i mm10.chr19 I 1 C 0 s canFam3.chr1 35308816 105 - 122678785 ACATTTTGTGTGTATTGTAAAGATGAA--CAGGAGGGTCCCTCTGTGCCCCTTTAGGAACAG-CTGGTATG-CTGAGT------ATGTTCTTAGAAGTCTTGTAACTCACAGAAG i canFam3.chr1 I 102 C 0 a score=2498975.000000 s hg38.chr9_GL383541v1_alt 101667 643 + 171286 gattgggagggagtgg---cttctcaggtaatgttctatttctctccatgggtgtgttcagcttgtgaaaacttaagcacttgacagatgacacatctacctttctctgtgtatattttacttgaatcaaaagtAA--GGAAAGTAAAAGGAATGG-----TCTCATCCTGTATTTAGCAGagtgcaatgaaccccatggacccatctctcagctgcaacatttctccatccactcatggccaaacctctgtcagctgtaactcatccacttcctcctcaccattcccactggattatttagaa------tgcagaatcacaccatttcGCCTGAACCTCTTC---------CCCTCCCCCACCCCCAACTCTTA-------------ACACTGTGCTCTG------TCTGTGTGATTTTCAGGCCACTACATGTACGTGGACTCAGTTTATGTGAAGCACTTCCAGGAGGTGGCACAGCTCATCTCCCCGTTGACCACGGCCCCCATGGCTGGCTGCCTGTCATTTTATTACCAGATCCAGCAGGGGAATGACAATGTCTTTTCCCTTTACACTCGGGATGTGGCTGGCCTTTACGAGGAAATCTGGAAAGCAGACAGGCCAGGGAATGCTGCCTGGAACCTTGCGGAGGTCGAGTTCAGTGCTCCTTACCCCATGGAGGTAGGTG s panTro4.chr9 68667099 641 + 137840987 GATTGCGAGGGAGTgg---cttctcgggtaatgttctatttctctccatgggtgtgttcagcttgtgaaaacttaagcacctgacagatgacacatctacctttctctatgtatattttacttgaatcaaaagtAA--GGAAAGTAAAAGGAATGG-----TCTCATCCTGTATTTAGCAGagtgcaatgaaccccatggacccatctctcagctgcaacatttctccatccgctcatggccaaacctctgtcagctgtaactcatccacttcctcctcaccattcccgctggattatttagaa------tgcagaatcacaccatttcGCCTGGACCTTTTC---------CCCTCCCCCACCCCCAACTCTTA-------------ACACTGTGCTCTG------TCTGTG--ATTTTCAGGCCACTACATGTACGTGGACTCAGTTTATGTGAAGCACTTCCAGGAGGTGGCACAGCTCATCTCCCCGTTGACCACGGCCCCCATGGCTGGCTGCCTGTCATTTTATTACCAGATCCAGCAGGGGAATGACAATGTCTTTTCCCTTTACACTCGGGATGTGGCTGGCCTTTACGAGGAAATCTGGAAAGCAGACAGGCCAGGGAATGCTGCCTGGAACCTTGCGGAGGTCGAGTTCAATGCTCCTTACCCCATGGAGGTAGGTG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64823011 639 + 135191526 gattgggagggaatgg---cttctcgggtaatgttctatttctctccatgggtgtgttgagcttgtgaaaacttaagcacttgacagatgacacatctacctttctctatgtatattttacttgaatcaaaagtAA--GGAAAGTAAAAGGAATGG-----TCTCTTCCTGTATTTAGCAGagtgcaatgaactccatggacccgtcttgcagctgcaacatttcttcatccactcatggccaaacctctgtcagctgtaactcatccacttcctcctcaccattcccgctggattattttgaa------tgcagaatcacaccatttcacctGAACTTCTTC---------CCCTCCCCCACCCCCAACTCTTA-------------ACACTGTGCTCTG--------TGTG--ATTTTCAGGTCACTACATGTACGTGGACTCGGTTTATGTGAAGCACTTCCAGGAGGTGGCACAGCTCATCTCCCCGTTGACCACGGCCCCCATGGCTGGCTGCCTGTCATTTTATTACCAGATCCAGCAGGGGAATGACAATGTCTTTTCCCTTTACACTCGGGATGTGGCTGGCCTTTACGAGGAAATCTGGAAAGCAGACAGGCCAGGGAATGCTGCCTGGAACCTTGCGGAGGTCGAGTTCAATGCTCCTTACCCCATGGAGGTAGGTG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57859107 638 - 122973662 gattgggagggaatgg---cttctcgggtaatgttctatttctttccatgggtgtgttcagc-tgtgaaaatttaagcacttgacagataacacatctacctttctctatgtatattttacttcaatcaaaagtAA--GGAAAGTAAAAGGAATGG-----TCTCATCCTGTATTTAGCAGagtgcaatgaacctcatggacccgattctcagctgcaacatttctccatccactcaccgccaaacctctgccagctgtaactcatccacttcctcctcaccattcccgctggattattttgaa------tgcagaatcacaccatttcacctgAACCTCTTC---------CCCTCCCCCACCCCCAACTCTTA-------------ACGCTGTGCTCTG--------TGTG--ATTTTCAGGCCACTACATGTATGTGGACTCGGTTTATGTGAAGCACTTCCAGGAGGTGGCACAGCTCATCTCCCCGTTGACCACGGCCCCCATGGCTGGCTGCTTGTCATTTTATTACCAGATCCAGCAGGGGAATGACAATGTCTTTTCCCTTTACACTCGGGATGTGGCTGGCCTTTACGAGGAAATCTGGAAAGCGGACAGGCCAGGGAATGCTGCCTGGAATCTTGCGGAGGTCGAGTTCAATGCTCCTTACCCCATGGAGGTAGGTG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79792688 641 + 112192347 gactgtgagggagtgg---cttctagggtaatgttctatttctttccatgggtgtgttcagcttgtgaaaatttaagcactcgacagatgacacatctacttttctctatgtatattttacttgaatcaaaagtAA--GGAAAGTAAAAGGAATGG-----TCTCATCCTGTATTTAGCAGagtgcaatgaaccccatggacccatctctcagctgcaacatttctccatccactcatggccaaacctctgtcagctgtaactcatccacttcctcctcaccattcctgctggattattttgaa------tgcagaatcacaccatttcacctgAACCTCTT----------CCCTTCCCCACCCCCAACTCTT--------------ACGCTGTGCTCTGT----CTCTCTG--ATTTTCAGGCCACTACATGTACGTGGACTCGGTTTATGTGAAGCACTTCCAGGAGGTGGCACAGCTCATCTCCCCGTTGACCACGGCCCCCATGGCTGGCTGCCTGTCATTTTATTACCAGATCCAGCAGGGAAATGACAATGTCTTTTCCCTTTACACTCGGGATGTGGCTGGCCTTTACGAGGAAATCTGGAAAGCAGATAGGCCAGGGAATGCTGCCTGGAATCTTGCAGAGGTCGAGTTCAATGCTCCTTACCCCATGGAGGTAGGTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80872673 641 + 112612857 gactgtgagggagtgg---cttctagggtaatgttctgtttctttccatgggtgtgttcagcttgtgaaaatttaagcactcgacagatgacacatctacttttctctatgtatattttacttgaatcaaaagtAA--GGAAAGTAAAAGGAATGG-----TCTCATCCTGTATTTAGCAGagtgcaatgaaccccatggacccatctctcagctgcaacatttctccatccactcatggccaaacctctgtcagctgtaactcatccacttcctcctcaccattcctgctggattattttgaa------tgcagaatcacaccatttcacctgAACCTCTT----------CCCTTCCCCACCCCCAACTCTT--------------ACGCTGTGCTCTGT----CTCTCTG--ATTTTCAGGCCACTACATGTACGTGGACTCGGTTTATGTGAAGCACTTCCAGGAGGTGGCACAGCTCATCTCCCCGTTGACCACGGCCCCCATGGCTGGCTGCCTGTCATTTTATTACCAGATCCAGCAGGGAAATGACAATGTCTTTTCCCTTTACACTCGGGATGTGGCTGGCCTTTACGAGGAAATCTGGAAAGCAGATAGGCCAGGGAATGCTGCCTGGAATCTTGCAGAGGTCGAGTTCAATGCTCCTTACCCCATGGAGGTAGGTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76921689 637 + 107442819 GATTGTGAGGGAGTGG---CTTCTAgggtaatgttctatttctttccaTGGGTGTGTTCAGCTTGTGAAAATTTAAGCACTCGACAGATGACACATCTACTTTTctctatgtatattttacttgAATCAAAAGTAA--GGAAAGTAAAAGGAATGG-----TCTCATCCTGTATTTAGCAGAGTGCAATGAACCCCATGGACCCATCTCTCAGCTGCAACATTTCTCCATCCACTCATGGCCAAACCTCTGTCAGCTGTAACTCATCCACTTCCTCCTCACCATTCCTGCTGGATTATTTTGAA------TGCAGAATCACACCATTTCACCTGAacctctt----------cccttccccacccccaactctt--------------ACGCTGTGC----T----CTCTCTG--ATTTTCAGGCCACTACATGTACGTGGACTCGGTTTATGTGAAGCACTTCCAGGAGGTGGCACAGCTCATCTCCCCGTTGACCACGGCCCCCATGGCTGGCTGCCTGTCATTTTATTACCAGATCCAGCAGGGAAATGACAATGTCTTTTCCCTTTACACTCGGGATGTGGCTGGCCTTTAcgaggaaatctggaaagcagataGGCCAGGGAATGCTGCCTGGAATCTTGCAGAGGTCGAGTTCAATGCTCCTTACCCCATGGAGGTAGGTG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81186606 641 + 108555830 GATTGTGAGGGAGTgg---cttctagggtaatgttccatttctttccatgggtgtgttcagcttgtgaaaatttaagcactcgacagatgacacatctacttttctctatgtatattttacttgaatcaaaagtAA--GGAAAGTAAAAGGAATGG-----TCTCATCCTGTATTTAGCAAagtgcaatgaaccccatggacccatctctcagctgcaacatttctccatccactcatggccaaacctctgtcagctgtaactcatccacttcctcctcaccattcctgctggattattttgaa------tgcagaatcacaccatttcacctgAACCTCTT----------CCCTTCCCCACCCCCAACTCTT--------------ACGCTGTACTCTGT----CTCTCTG--ATTTTCAGGCCACTACATGTACGTGGACTCGGTTTATGTGAAGCACTTCCAGGAGGTGGCACAGCTCATCTCCCCGTTGACCACGGCCCCCATGGCTGGCTGCCTGTCATTTTATTACCAGATCCAGCAGGGAAATGACAATGTCTTTTCCCTTTACACTCGGGATGTGGCTGGCCTTTACGAGGAAATCTGGAAAGCAGATAGGCCAGGGAATGCTGCCTGGAATCTTGCAGAGGTCGAGTTCAATGCTCCTTACCCCATGGAGGTAGGTG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111420086 646 - 210400635 GCTtgggagggagtgg---cttctagggtaatgttctgtttctttctatgggtgtgttcagcttgtgaaaatttaagcacttgacggaggacacatctacctttctctatgtatattttacttgaatgaaaagtAA--GGAAGATAAAAGGAATGG-----TTTCACCCTGTATTTAGCAGagtgtaatgaaccccatggacccgtctcttggctgtaacatttttccatccactcatggccaaacctctgtcatctgtaacccatccacttcctcctcattattcccactggactattttgaaataaatcccagaatcatgccatttcacctGAATCTCTTC---------CCCTCCCCCACCCCCAACTCTG--------------ACGCTGTGCTCTC------TGTGTG--ATTTTCAGGCCACTACATGTATGTGGACTCAGTCTATGTGAAGCACTTCCAGGAGGTGGCACAGCTCATCTCCCCATTGACCACGGCCCCCATGGCTGGCTGCTTGTCATTTTATTACCAGATCCAGCAGGGGAATGACAATGTCTTCTCCGTCTACACTCGGGATGTGGCTGGCCTTTATGAGGAAATCTGGAAAGTGGACAGACCAGGGAATGCTGCCTGGAACCTTGCAGAGGTCGAATTCAATGCTCCTTACCCCATGGAGGTAGGTG i calJac3.chr1 I 305 C 0 s mm10.chr19 38067280 584 - 61431566 GCTTGGGAAGGGATCG---CATCTGATATAGTGATAGATTCATC-------------------TGTGAAAATGCAAACACTTGGAACATGGCACATCT---TTCCTGTGGGGATAATTTACTTCAGTCAAAGGTAAAGGGGCATTTAAACTGCT-------TCTCATCTGGCATTT-GCAGGATGCAATAAACCCC-TGTGTTCATCTCCCAGCTATGACACTT----ACACACTCCTAACTAG------------------------AATTCCTTCTCACCCCTTCCAATGGATTGGGTTGAAGTGAGACCCAGAATGTCACCGGTCCATCTGCAACTTACC--------AGCCTGTCTGACCCT---CTCTT------------------------CTGT----CTGTGTG--ATTTCCAGGCCACTACATGTATGTGGACTCTGTGTATGTCAAGCACTTCCAGGAAGTAGCCCAGCTCATCTCCCCAGTGACCACAGCCTCCATGTCTGGCTGTCTCTCGTTCTATTACCAGCTTCAGCAGGGGAATGACAATGTCTTCTCTGTTTACACACGGGACATGGCTGGCCTGTACGAGGAGATTTGGAAAGTGGACAGCCCAGGCAATGCAGCCTGGAACCTTGCGGAGGTGGAATTTAGTGCTCCTTACCCCATGGAGGTAGGTG i mm10.chr19 C 0 I 1698 s canFam3.chr1 35308921 678 - 122678785 CCTTGGGAGAAGCAGGGCCCTCCTGGGGTCAGGTTCGGTTTCTTTCCACAGCTGCGTTCAGCTTGTGAAAATTCCAGTGCTCTGCAGCTGATGCATCTACCTCTGTAGCTGTGTATTTTGCTTCTACCCAAAGTCG--GGCAATGAGAGAGAGTGGACGGTTCTGGTCTTGTACTTAGCAGAGCACGTGGAGCTCCGTGCACTCCCCTCCCAGCAAGCAC----CCCCATCGGCCCGTGGCCAGACTTCGTGCGCCCCTAACTCATCCACTTCTTTGCCACACACACGCCCTGATTGCCTTGGAGCAAATCCTAGCATTGCACTGTGTCCCCTGAACCACCACCACCAGCCAccccccccccccccccccgccTAATCCCACCAGCCTGCCTTATGCTATGTGTCACCCTGTG--ATTT-CAGGCCACTACATGTATGTGGACTCGGTTTACGTCAAGCACTTCCAGGAGGTAGCGCAGCTCATCTCCCCGATGACCACAGCCCCCATGTCCGGCTGCCTGTCATTTTACTACCAGCTCCAGCAGGGGAATGACAATATCTTCTCCCTCTATACTCGGGATGGGGCTGGCCTCTACGAGGAAATCTGGAAGATGGGCCAGCCAGGGAATGCTGCCTGGAATCTGGCTGAGGTGGAGTTCAGCGCGCCCTACCCCATGGAGGTAGGTG i canFam3.chr1 C 0 C 0 a score=1222528.000000 s hg38.chr9_GL383541v1_alt 102310 428 + 171286 TACTGGTGCGCACCAGCTGTTC----ACTGGCACTCTTTAGACATGCCACCCACACACAGGGCTGGAGATGGAGAGGCTGTGCAGCCTCACACTCAGTCTGTCTTTTCTGCTGTGCCTCAACTGTATTCTTTCTCATCCTCAG----CCCCTCTCCTGCTCTCCCTTCCTCTGTGTCCCCT-TTGCCTGCCTCCTTTATCACCTTCATTTCCTAGCAAGAGTCA-TTTTTATGAGAACAAATATGGCTAAAGCCAGTTAACCAACTAGACTTCTTGGCGACCCTCTCCTTCTGAACCTTGCACTGTGGTCACAGAGGGTTCAAAAGAGGAGATCAGAACCCTCCAAGTAAAACTCAGTCTTGAGCTACCCTTCCTGAGAGCAGTTTTGAAGGTTTTCCTTACTTGAGTGAACTGTTTT----------------TTTTTTTTTTTT-------------------------AGAAAAAG s panTro4.chr9 68667740 438 + 137840987 TACTGGTGCGCACCAGCTGTGC----ACTGGCACTCTGCAGACATG------ACACACAGGGCTGGAGATGGAGAGGCTGTGCAGCCTCACACTCAGTCTGTCTTTTCTGCTGTGCCTCAACCGTACTCTTTCTCATCCTCAG----CCCCTCTCCTGCTCTCCCTTCCTCTGTGTCCCCT-TTGCCTGCCTCCTTTATCACCTTCATTTCCTAGCAAGAGTCA-TTTTTATGAGAACAAATATGGCTAAAGCCAGTTAACCAACTAGACTTCTTGGCGACCCTCTCCTTCTGAACCTTGCACTGTGGTCACAGAGGGTTCAAAAGAGGAGATCAGAACCCTCCAAGTAAAACTCAGTCTTGAGCTACCCTTCCTGAGAGCAGTTTTGAAGGTTTTCCTTACTTGAGTGAACTGttttgttttttgtttttgtttttttttttttt-------------------------AGAAAAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64823650 434 + 135191526 TACTGGTGCGCACCAGCTGTGC----ACTGGCACTCTGCAGACATGCCACCCACGCACAGGGCTGGAGATGGAGAGGCTGTGCAGCCTCACACTCAGTCTGTCTTTTCTGCTGTGCCTCAACCGTACTCTTTCTCATCCTCAG----CCCTTCTCCTGCTCTCCCTTCTTCTGTGTCCCCT-TTGCCTGCCTCTTTTATCACCTTCATTTCCTAGCAAGAGTCATTTTTTATGAGAACAAATATGGCAAAAGCCAGTCAACCAACTAGACTTCTTGGCGACCCTCTCCTTCTGAACCTTGCACTGTGGTCACAGAGGGTTCAAAAGAGGAGATCAGAACCCTCCAAGTAAAACTCAGTCTTGAGCTACCCTTCCTGAGAGCAGTTTTGAAGGTTTTCCTTATTTGAGTGAACTGTTTT-----------TTTTTGTTTTTTTTTTT-------------------------AGAAAAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57859745 418 - 122973662 TACTGGTGCACACCAGCTGTGC----GTTGGCACTCTGCAGACATGCCACCCATACACAGGGCTGGAGATGGAGAGGCTGTGCAGCCTCACACTCAGTCTGTCTTTTCTGCTGTGCCTCAACCATACTTTTTCTCATCCTCAG----CCCCTCTCCTGCTCTCCCTTCCTCTGCGTCCCCT-TTGCCTGCCTCCTTTATCACCTTCATTTCCTAGCAAGAGTCA-TTTTTATGAGAACAACTATGGCAAAAGCCAGTCAACCAACTAGACTTCTTGGCGACCCTCTCCTT------CTTGCACTGTGGTCACAGAGGGTTCAAAAGAGGAGATCAGAACCCTCCAAGTAAAACTCAGTCTTGAGCTACCCTTCCTGAGAGCAGTTTTGAAGGTTTTCC----TTGAGTGAACTGTTTT-------------------------TCT----------------AAAAAAAAAAAAAAAAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79793329 439 + 112192347 TACTGGTGTGCACCAGCTGTGCCAGGGTGGGCGCTCTGCAGATGTGCCACCCACACACACAGCTGGAGATGGAGAGGCTGTGCAGTCTCACACTCAGTCTGTCTTTTCTGCTGTGCCTGAACCATGCTCTTTCTCATCCTCAG----CCCCTCTCCTGCTCTCCCTTCCTCTGTGTCCCCT-TTGCCTGCCTCCTTTATTACCTTCATTTCCTAGCAAGAGTCA-TTTTTATGAGAAAAAATATGGCAAAAGCCAGTCAACCAACTGGACTTCTTGGCGACCCTCTCCTTCTGAAGCTTGCACTGTGGTCACAGAGGGTTCAAACGAGGAGATCAGAACCCTCCAAGTAAAACTCAGTCTGGAGTTACCTTTCCTGAGAGCAGTTTTGAAAGTTTTCCTTACTTGAGTGAAATGTTTT------------------------TCTT----------aaaaaaaaaaaaaaaaaaaaaGG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80873314 449 + 112612857 TACTGGTGTGCACCAGCTGTGCCAGGGTGGGCGCTCTGCAGATGTGCCACCCACACACACAGCTGGAGATGGAGAGGCTGTGCAGTCTCACACTCAGTCTGTCTTTTCTGCTGTGCCTGAACCATGCTCTTTCTCATCCTCAG----CCCCTCTCCTGCTCTCCCTTCCTCTGTGTCCCCT-TTGCCTGCCTCCTTTATTACCTTCATTTCCTAGCAAGAGTCA-TTTTTATGAGAAAAAATATGGCAAAAGCCAGTCAACCAACTGGACTTCTTGGCGACCCTCTCCTTCTGAAGCTTGCACTGTGGTCACAGAGGGTTCAAACGAGGAGATCAGAACCCTCCAAGTAAAACTCAGTCTGGAGTTACCTTTCCTGAGAGCAGTTTTGAAAGTTTTCCTTACTTGAGTGAACTGTTTT------------------------TCTTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76922326 439 + 107442819 TACTGGTATGCACCAGCTGTGCCAGGGTGGGCACTCTGCAGATGTGCCACCCACACACAGAGCTGGAGATGGAGAGGCTGTGCAGTCTCACACTCAGTCTGTCTTTTCTGCTGTGCCTGAACCATGctctttctcatcctcag----cccctctcctgctctcccttcctctgtgtcccct-ttgcctgcctcctTTATTACCTTCATTTCCTAGCAAGAGTCA-TTTTTATGAGGAAAAATATGGCAAAAGCCAGTCAACCAACTGGACTTCTTGGCGACCCTCTCCTTCTGAAGCTTGCACTGTGGTCACAGAGGGTTCAAACGAGGAGATCAGAACCCTCCAAGTAAAACTCAGTCTGGAGTTACCTTTCCTGAGAGCAGTTTTGAAGGTTTTCCTTACTTGAGTGaactgtttt------------------------tcta----------aaaaaaaaaaaaaaaaaaaaagg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81187247 437 + 108555830 TACTGGTGTGCACCAGCTGTGCCAGGGTGGGCGCTCTGCAGATGTGCCACCCACACACAGAGCTGGAGATAGAGAGGCTGTGCAGTCTCACACTCAGTCTGTCTTTTCTGCTGTGCCTGAACCATGCTTTTTCTCATCCTCAG----CCCCTCTCCTGCTCTCCCTTCCTCTGCGTCCCCT-TTGCCTGCCTCCTTTATTACCTTCATTTCCTAGCAAGAGTCA-TTTTTATGAGAAAAAATATGGCAAAAGCCAGTCAACCAACTGGACTTCTTGGCGACCCTCTCCTTCTGAAGCTTGCACTGTGGTCACAGAGGGTTCAAACGAGGAGATCAGAACCCTCCAAGTAAAACTCAGTCTGGAGTTACCTTTCCTGAGAGCTGTTTTGAAGGTTTTCCTTACTTGAGTGAACTGTTTT------------------------TCTa------------aaaaaaaaaaaaaaaaaaaaG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111420732 433 - 210400635 TGCCGGT--GCACCAGCTGTGCCGG-GGGGGCACTCTGCAGTCATGCCACCTACACACAGGGCTGGAGATG--GAGTCTGTGCAGCCTCACACTCAGTCTGTCTTTTCTGCTGTGCCTCAGTCGTACTCTTTCTTCTCCTCAG----CCCCTCTCCTGCTCGCCCTTCCTCTGCATCACCTGCTGCTGGCCTCCTTTGTCACCTTCATTTCTTAGCAAGAGCAG-TTTTTATAAGAACAAATACTGCAAAAGCCAGTCAACCAACTAGACTTGTTGAGGACCCTCTCCTTCTCAACCTTACACTGTGGTCATGGAGGGTTCGAAAGAGGAGATCAGAACGCTCCAAGTCAAACTCACTCTTGAGCTACCCTTCCTGAGAGCAGTTTTGAAGGTTTTCCTTACTTGACTGAACTGTTTT--------------------------TT----------AAGAAAGAAGGAAAGAGAGAGAG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35309599 285 - 122678785 --------TGCCCTGGCCG----------GACCCTCTGCGGGGGTGCA--------GCAGGCCCGGG----------------------------AGTCTTTATCTTCC-----------------TTCCTCTCCACCCCCTGAGACCCCCTCTGCTTCTCCCTCTTCTTCTCTTGTCCCT-CTGTCTTCCTGCT----------------------------------------------------------------GCCTACTATATTTCATGGGCACACGTCCCCTCTGAACCTCACACTGTGATCGCGAGG----CAAAAGAGATGAAC---ACCCTCTAGGTGAAACCCACTCGTGAACTTCCATTCCTGAGAGCTAGGATGAAGCGTTCCCTTGCTGGAGGGAAGAGTCTT--------------------------CC-------------------------agagaaag i canFam3.chr1 C 0 C 0 e mm10.chr19 38067864 1698 - 61431566 I a score=5346114.000000 s hg38.chr9_GL383541v1_alt 102738 1471 + 171286 TG--------------------------------ACTCATTTCTTT--------TTTTGCAGCATAAATAATGTCGTAAAATCAGAAACAAACTTGCTATTATGGCCCTAGTTTGAAACAAGGCTTGATGCCTTCATTTTAAAACTTTTTCCAGTTATATAAGTGAC--GTGTTCAATGCAGAAGAATTAGAAAATTCAGAGAAATGAAATGAATTAAAATGCCCTCAGCCAACTTCACAAAGGGGAGGACTACTAACATTAAAG-TTCTACTATCTTTTCGACCTTTTTCTAAGCCCGTACATGAATACATGTCTGTatctatgtatgtatttcagaagctacaagtactttcagtactgactatccagccaagtagataaaattatctccgtatttacacacaagaaggaag---------aaaacagagtgtccaagaaattggaca--t-ttttttctaggtcacacagctggtgaatgccagagAACTCCGTAACTAAGTTCGTGGACTAAAATCTGACCGAAAGCTGAGGAAGGAGGCCCAGCTCTGTCTGAGGACCCCTTAGGACCTCTAGAATCAGTGGGTGCAGCAATATGGTTGCTA------TAAGATTGCTATAAAGATTTG----GAGCTATAAGTAGAGTCTTGGTTACCCCA-AGTTATTAATATCCTCCACTTTTCACTTTGTGCTTTTTGCAATATCTTCTCCAGTTCCCTTTAAAGTGCCA----------GAGAAACAGATTATTCCTCTGGATGGGTTTCGGTGGTGCCATCTGCTAGCCTGATGTAGA--GCTGCAGAGAAC---AGGGTTAGGTCTTAGTTTCTGATGTGTTTCATCTACTGATGGCGTGCCTGCCTCTCCCCACACCCCCTTCCTATTTACCTCCCT------ACCTCCCCCCAC--------------------AAAAAAAAAACACTCTAGAGAGAGCACAGTGTCTCTTGCAGAATGTGTGCTATTTCCTATCCCAAAGTCCAACCAGGTCTCGATTTGTTCTTGCAGCCCAGTGGAAAATTTTCTGTGAGTTTGGGTTACGAGGAGGAAAAGAAATGCATGTACTGCTTCAAAAGTT-----TCCCGTCAAAGTCAGATGAGT-CCC------------------------------------------------------------------------------------------ACACACACACTGACAGC-G-----------TTCTCTTTACCAACTCCTTCCATCCAACCATAAACTCCTTGGGCAACATTTGTCTGAATCAAATGTTGCTGAAT-TT--TTAAAAATCAATACTTGAAAAGTTACAACTCTGGACACTACTAAACCTCAATACACATCCTTTGGGTCAACACATGT--GATTTTGCTCTACTAGTCTGAACTATT-CACTGGTGTTATTTGCTCTC---ACTCA---TCAGGAAAAGAAAGTTGTCCTGAAGAAATCAGTGAGTTTAATGTCATCACATTCTCAAGTGAATTTTGAGAAGGAAAACAAACATTGGAGA------------C-TGTCTGAACAAGA--GAAC------------------ACATTGGCACAGAGGCTGTGATTAGCACATGCTGATCAGGAATAGCATTCTTTCCCCACCGGCTCAGTG----TAAATTTTGCCATTCACTTTCTT-TACCAG--CTAGTGCCTT s panTro4.chr9 68668178 1471 + 137840987 TG--------------------------------ACTCATTTCTTT--------TTTTGCAGCATAAATAATGTCGTAAAATCAGAAATAAACTTGCTATTATGGCCCTAGTTTGAAAGAAGGCTTGATGCCTTCATTTTAAAACTTTTTCCAGTTATATAAGTGAC--GTGTTCAATGCAGAAGAATTAGAAAATTCAGAGAAATGAAATGAATTAAAATGCCCTCAGCCAACTTCACAAAGGGGAGGACTACTAACATTAAAG-TTCTACTATCTTTTCGACCTTTTTCTAAGCCCATACATGAACACATGTCTGTATCTATGTATGTATTTCAGAAGCTACAAGTACTTTCAGTACTGactatccagccaagtagataaaattatctccgtatttacagacaagaaggaag---------aaaacagaatgtccaagaaattggaca--t-ttttttctaggtcacacagctggtgaatgccagagAACTCAGTAACTAAGTTCGTGGACTAAAATCTGACCGAAAGCTGAGGAAGGAGGCCCAGCTCTGTCTGAGGACCCCTTAGGACCTCTAGAATCAGTGGGTGCAGCAATATGGTTGCTA------TAAGATTGCTATAAAGATTTG----GAGCTATAAGTAGAGTCTTGGTTACCCCA-AGTTATTAATATACTCCACTTTTCACTTTGTGCTTTTTGCAATATCTTCTCCAGTTCCCTTTAAAGTGCCA----------GAGAAACAGATTATTCCTCTGGATGGGTTTCGGTGGTGCCATCTGCTAGCCTGATGTAGA--GCTGCAGAGAAC---AGGGTTAGGTCTTAGTTTCTGATGTGTTTCATCTACTGATGGCGTGCCTGCCTCTCCCCACACCCCCTTCCTATTTACCTCCCC------ACCTCCCCCCGC--------------------AAAAAAAAAACACTCTAGAGAGAGCACAGTGTCTCTTGCAGAATGTGTGCTATTTCCTATCCCAAAGTCCAACCAGGTCTCGATTTGTTCTTGCAGCCCAGTGGAAAATTTTCTGTGAGTTTGGGTTACGAGGAGGAAAAGAAATGCATGTACTGCTTCAAAAGTT-----TCCCGTCAAAGTCAGATGAGT-CCC------------------------------------------------------------------------------------------ACACACACACTGACAGC-G-----------TTCTCTTTACCAACTCCTTCCATCCAACCATAAACTCCTTGGGCAACATTTGTCTGAATCAAATGTTGCTGAAT-TT--TTAAAAATCAATACTTGAAAAGTTACAACTCTGGACACTACTAAACCTCAATACACATCCTTTGGGTCAACACATGT--GATTTTGCTCTACTAGTCTGAACTATT-CACTGGTGTTATTTGCTCTC---ACTCA---TCAGGAAAAGAAAGTTGTCCTGAAGAAATCAGTGAGTTTAATGTCATCACATTCTCAAGTGAATTTTGAGAAGGAAAACAAACATTGGAGA------------C-TGTCTGAACAAGA--GAAC------------------ACATTGGCACAGAGGCTGTGATTAGCAAATGCTGATCAGGAATAGCATTCTTTCCCCACCGGCTCAGTG----TAAATTTTGCCATTCACTTTCTT-TACCAG--CTAGTGCCTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64824084 1476 + 135191526 TG--------------------------------ACTCATTTCTTT--------TTTTGCAACATAAATAATGTCGTAAAATCAGAAATAAACTTGCTATTATGACCCTAGTTTGAAACAAAGCTTGATGCCTTCATTTTAAAACTTTTTCCAGTTATATAAGTGAC--GTGTTCAATGCAGAAGAATTAGAAAATTCAGAGAAATGAAATGAATTAAAATGCCCTCAGCCAACTTCACAAAGGGGAGGACTACTAACATTAAAG-TTCTACTATCTTTCTGACCTTTTTCTAAGCACATACATGAATACATGTCTATATCTATGTATGTATTTCAGAAGCTACAAGTACTTTCAGTACTGactatccagccaagtagataaaattatctccgtatttacagacaagaaggaag---------aaaacagagtgtccaagaaattggaca--t-ttttttctaggtcacacagctggtgaatgccagagAACTCAGTAACTAAGTTTGTGGACTAAAATCTGACCAAAAGCTGAGGAAGGAGGCCCAGCTCTGTCTGACGACCCCATAGAACCTCTAGAATCAGTGGGTGCAGCAATATGGTTGCTA------TAAGATTGCTATAAAGATTTG----GAGCTATAAGTAGAGTTTCGGTTACCCCA-AGTTATTAATATCCCCCACTTTTCACTTTGTGCTTTTTGCAATATCTTCTCCAGTTCCCTTTAAAGTGCCA----------GAGAAGCAGATTATTCCTCTGGATGGGTTTCGGTGGTGCCATCTGCTAGCCTGATGTAGA--GCTGCAGAGAAC---AGGGTTAGGTCTTAGTTTCTGATGTGTTTCATCTACTGATGGCGTGCCTGCCTCTCCCCACACTCCCTTCCTATTTACCTCCCC------ACCTCCCCCCCC---------------ACAAAAAAAAAAAAACACTCTAGAGAGAGCACAGTGTCTTTTGCAGAATGCGTGCTATTTCCTATCCCAAAGTCCAACCAGGTCTCAATTTGTTCTTGCAGCCCAGTGGAAAATTTTCTGTGAGTTTGGGTTACGAGGAGGAAAAGAAATGCATGTACTGTTTCAAAAGCT-----TCCTGTCAAAGTCAGATGAGT-CCC------------------------------------------------------------------------------------------ACACACACACTGACAGC-A-----------TTCTCTTTACCAACTCCTTCCATCCAACCACAAACTCCTTGGGCAACATTTGTCTGAATCAAATTTTGCTGAAT-TT--TTAAAAATCAATACTTGAAAAGTTACAACTCTGGACACTACTAAACCTCAATACACATCCTTTGGGTCAACACGTGT--GATTTCGCTCTACTAGTCTGAACTATT-CACTGGTGTTATTTGCTCTC---ACTCA---TCAGGAAAAGAAAGTTGTCCTGAAGAAATCAGTGAGTTTAATGTCATCACATTCTCAAGTGAATTTTGAGAAGGAAAACAAACATTGGAGA------------C-TGTCTGAACAAGA--GAAC------------------ACATTGGCACAGAGGCTGTGATTAGCAAATGCTGATCAGGAATAGCATTCTTGCCCCACCGGCTCAGTG----TAAATTTTGCCATTCACTTTCTT-TACCAG--CTAGTGCCTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57860163 1476 - 122973662 TG--------------------------------ACTCATTTATTT--------TTTTGCAACATAAATAATGTCGTAAAATCAGAAATAAACTTGCTATTATGGCCCTAGTTTGAAACAAGGCTTGATGCCTTCATTTTAAAATTTTTTCCAGTTATATAAGTGAC--GTGTTCAATGCAGAAGAATTAGAAAATTCAGAGAAATGAAATGAATTAAAATGCCCTCAGCCAACTTCACAAAGGGGAGGACTACTAACATTAAAG-TTCTACTATCTTTTCGACCTTTTTCTAAGCACATACATTAATACATGTCTATATCTATGTATGTATTTCAGAAGCTACAAGTACTTTCAGTACTGactatccagccaagtagataaaattagctccgtatttacagacaagaaaggag---------aaaacagagtgtccaagaaattggaca--t-ttttttctaggtcacacagctggtgaatgccagagAACTCAGTAACTAAGTTCGTGGACTAAAATCTGACCCAAAGCTGAGGAAGGAGGCCCAGCTCTGTCTGAGGACCCCATAGGACCTCTAAAATCAGTGGGTGCAGCAATATGGTTACTA------TAAGATTTCTATAAAGATTTG----GAGCTATAAGTAGAGTCTCGGTTACCCCA-AGTTATTAATATCCCCCACTTTTCACTTTGTGCTTTTTACAATATCTTCTCCAGTTCCCTTTAAAGTGCCA----------GAGAAGCAGATTATTCCTCTGGATGGGTTTAGGTAGTGCCATCTGCTAGCCTGATGTAGA--GCTGCAGAGAAC---AGGCTTGGGTCTTAGTTTCTGATGTGTTTCATCTACTGATGTCGTGCCTGCCTCTCCCCACACCCCCTTCCTATTTACCTCCCCTACCTACCCTCCCCCCAC---------------------AAAAAAAAACACTCTAGATAGAGCACAGTGTCTTTTGCAGAATGTTTGCTATTTCCTATCCCAAAGTCCAACCAGGTCTCGATTTGTTCTTGCAGCCCAGTGGAAAATTTTCTGTGAGTTTGAGTTACGAGGAGGAAAAGAAATGCATTTACTGCTTCAAAAGTT-----TCCTATCAAAGTCAGATGAGT-CCC------------------------------------------------------------------------------------------ACACACACACTGACAGC-G-----------TTCTCTTTACCAACTCCTTCCATCCAACCATAAACTCCTTGGGCAACGTTTGTCTGAGTCAAACTTTACTGAAT-TT--TAAAAAATCAATACTTGAAAAGTTACAACTCTGGAATCTACTAAACCTCAATACACATCCTTTGGGTCAACACATGT--GATTTTGCTCTACTAGTCTGAACTATT-CACTGGTGTTATCTGCTCTC---ACTCA---TCAGGAAAAGAAAGTTGTCCTGAAGAAATCAGTGAGTTTAATGTCATCACATTCTCAAGTGAATTTTGAGAAGGAAAACAAACATTGGAGA------------C-TGTCTGAACAAGA--AAAC------------------ACATTGGCACAGAGGCTGTGATTAGCAAATGCTGATCAAGAATAGCATTCTTGCCCCACCAGCTCAGTG----TAAATTTTGCCATTCACTTTCTT-TACCAG--CTAGTGCCTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79793768 1456 + 112192347 TG--------------------------------ACTCATTTCTTT--------TTTTGCAACATAAATAATGTTGTAAAATCAGA---AAACTTGCTATTATGGCCCTAGTTTGAAATAAGGCTTGATGCCTTCATTTTAAAACtttttccggttatataagtgat--acgttcaatgcagaagaattagaaaattcagagaCATGAAATGAATTAAAATGCCCTCAGCCAACTTCACAAAGGGGAGGACTACTAACATTAAAG-GTTTAGTATCTTTTCGAC--TTTTCTAAGCACATACATTGATACATGTCTGTATCTATGTATGTATTTCAGAAGCTACGAGCACTTTCAGTACTGactatccggccaagtagataaaattatctccgtatttacagacaagaagagag---------aaaacagagtgtccaagaaattggaca--t-ttttttctaggtcacacagctggtgaatgccagagAACTTAGTAACTAAGTTCATGGACTAAAATCTGACCCAAAGCTGAGGAAGGAGGCCCAGCTCTGTCTGAGGACCCCATAGCACCACTAGAATCAGTGGGTGCAGCAATATGGTTGCTA------TAATATTGCCACAAAGATTTG----GAGCTATAAGTAGAGTCTCGGTTACCCCA-AGTTATGAATGTCCCTCACTTTTCACTTTGTGCGTCTTGCAATATCTTCTCCAGTTCCCTTTAAAGTGCCA----------GAGAAGCAGATTATTCCTCTGGATGGGTTTCGGTGGTGCCATCTGCTAGCCTGATGTAGA--GCTGCAGAGAAC---AGGGTTGGGTCTTAGTTTCTGATGTGTTTCATCTACTGATGGCGTGCCTGCCTCTCCCCACATCCCCTTCCTATTTACCTCCCCT-----ACCTCCCCCCAC-----------------------AAAAAAACACTCTAGAGAGAGCACAGTGTCTTTTGCAGAATGTGTGCTATTTCCTATCCCAAAGTCCAACCAGGTCTTGATTTGTTCTTGCAGCTCAGTGGAAAATTTTCTGTGAGTTTGGGTTATGAGGAGGAAAAGAAATGCATGTACTGCTTCAAAAGTT-----TCCTATCAAAGTCAGATGAGT-CCC------------------------------------------------------------------------------------------CCCCACACACTGACAGT-G-----------TTCTCTTTACCAACTCCTTTCATCCAACCATAAGCTCCTCGGGCAACGTTTGTCTAAATCAAACTTTGCTGAAT-TT--TTAAAAATCAATACTTGTAAGGTTACAACTCTGGACACGACTAAACCTCAATACACATCCTTTGGGTCAACACATGT--GATTTCGCTCTACCAATCTGAACTATT-CACTGGTGTTATTTGCTCTC---ACTCA---TCAGGAAAAGAAAGTTGTCCTGAAGAAATCAGTGAGTTTAATGTCATCACATTCTCAAGTGAATTTTGAGAAGGAAAACAAACACTGGAGA-----------------CTGAACAAGA--GAAC------------------ACATTGGCACAGAGGCTGTGATTAGCAAACGCTGATCAGGAATAGCATTCTTACCCCACCGGCTCTGCG----TAAATTTTGCCATTCA----CTT-TACCAG--CTAGTGCCTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80873763 1456 + 112612857 TG--------------------------------ACTCATTTCTTT--------TTTTGCAACATAAATAATGTTGTAAAATCAGA---AAACTTGCTATTATGGCCCTAGTTTGAAATAAGGCTTGATGCCTTCATTTTAAAACTTTTTCCGGTTATATAAGTGAT--ACGTTCAATGCAGAAGAATTAGAAAATTCAGAGACATGAAATGAATTAAAATGCCCTCAGCCAACTTCACAAAGGGGAGGACTACTAACATTAAAG-GTTTAGTATCTTTTCGAC--TTTTCTAAGCACATACATTGATACatgtctgtatctatgtatgtatTTCAGAAGCTACGAGCACTTTCAGTACTGactatccggccaagtagataaaattatctccgtatttacagacaagaagagag---------aaaacagagtgtccaagaaattggaca--t-ttttttctaggtcacacagctggtgaatgccagagAACTTAGTAACTAAGTTCGTGGACTAAAATCTGACCCAAAGCTGAGGAAGGAGGCCCAGCTCTGTCTGAGGACCCCATAGCACCACTAGAATCAGTGGGTGCAGCAATATGGTTGCTA------TAATATTGCCACAAAGATTTG----GAGCTATAAGTAGAGTCTCGGTTACCCCA-AGTTATGAATGTCCCTCACTTTTCACTTTGTGCGTCTTGCAATATCTTCTCCAGTTCCCTTTAAAGTGCCA----------GAGAAGCAGATTATTCCTCTGGATGGGTTTCGGTGGTGCCATCTGCTAGCCTGATGTAGA--GCTGCAGAGAAC---AGGGTTGGGTCTTAGTTTCTGATGTGTTTCATCTACTGATGGCGTGCCTGCCTCTCCCCACATCCCCTTCCTATTTACCTCCCCT-----ACCTCCCCCCAC-----------------------AAAAAAACACTCTAGAGAGAGCACAGTGTCTTTTGCAGAATGTGTGCTATTTCCTATCCCAAAGTCCAACCAGGTCTTGATTTGTTCTTGCAGCTCAGTGGAAAATTTTCTGTGAGTTTGGGTTATGAGGAGGAAAAGAAATGCATGTACTGCTTCAAAAGTT-----TCCTATCAAAGTCAGATGAGT-CCC------------------------------------------------------------------------------------------CCACACACACTGACAGT-G-----------TTCTCTTTACCAACTCCTTTCATCCAACCATAAGCTCCTCGGGCAACGTTTGTCTAAATCAAACTTTGCTGAAT-TT--TTAAAAATCAATACTTGTAAGGTTACAACTCTGGACACGACTAAACCTCAATACACATCCTTTGGGTCAACACATGT--GATTTCGCTCTACCAATCTGAACTATT-CACTGGTGTTATTTGCTCTC---ACTCA---TCAGGAAAAGAAAGTTGTCCTGAAGAAATCAGTGAGTTTAATGTCATCACATTCTCAAGTGAATTTTGAGAAGGAAAACAAACACTGGAGA-----------------CTGAACAAGA--GAAC------------------ACATTGGCACAGAGGCTGTGATTAGCAAACGCTGATCAGGAATAGCATTCTTACCCCACCGGCTCTGCG----TAAATTTTGCCATTCA----CTT-TACCAG--CTAGTGCCTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76922765 1465 + 107442819 tg--------------------------------actcatttcttt--------ttttgcaacATAAATAATGttgtaaaatcagaaataaacttGCTATTATGGCCCTAGTTTGAAATAAGGCTTGATGccttcattttaaaactttttccggTTATATAAGTGAT--ACGTTCAATGCAGAAGAATTAGAAAATTCAGAGAcatgaaatgaattaaaatgccCTCAGCCAACTTCACAAAGGGGAGGACTACTAACATTAAAG-GTTTACTATCTTTTCGACCTTTTTCTAAGCACATACATTGATACATGtctgtatctatgtatgtatttcaGAAGCTACGAGCACTTTCAGTACTGACTATCCGGCCAAGTAGATAAAATTATCTCCGTATTTAcagacaagaagagag---------aaaacagagtgTCCAAGAAATTGGACA--t-ttttttctaggtcacacagctggtgaatgCCAGAGAACTTAGTAACTAAGTTCGTGGACTAAAATCTGACCCAAAGCTGAGGAAGGAGGCCCAGCTCTGTCTGAGGACCCCATAGCACCACCAGAATCAGTGGGTGCGGCAATATGGTTGCTA------TAATATTGCCATAAAGATTTG----GAGCTATAAGTAGAGTCTCAGTTACCCCA-AGTTATTAATGTCCCTCACTTTTCACTTTGTGCGTCTTGCAATATCTTCTCCAGTTCCCTTTAAAGTGCCA----------GAGAAGCAGATTATTCCTCTGGATGGGTTTCGGTGGTGCCATCTGCTAGCCTGATGTAGA--GCTGCAGAGAAC---AGGGTTGGGTCTTAGTTTCTGATGTGTTTCATCTACTGATGGCGTGCCTGCCTCTCCCCACATCCCCTTCCTATTTACCTCCCCT-----ACCTCCCCCCGC-----------------------aaaaaaaCACTCTAGAGAGAgcacagtgtcttttgcagaatGTGTGCTATTTCCTATCCCAAAGTCCAACCAGGTCTTGATTTGTTCTTGCAGCTCAGTGGAAAATTTTCTGTGAGTTTGGGTTatgaggaggaaaagaaatgcaTGTACTGCTTCAAAAGTT-----TCCTATCAAAGTCAGATGAGT-CCC------------------------------------------------------------------------------------------CCACACACACTGACAGT-G-----------TTCTCTTTACCAACTCCTTTCATCCAACAATAAGCTCCTCGGGCAACGTTTGTCTAAAtcaaactttgctgaat-tt--ttaaaaatcaatacttgAAAGGTTACAACTCTGGACACGACTACACCTCAATACACATCCTTTGGGTCAACACATGT--GATTTTGCTCTACCAATCTGAACTATT-CACTGGTGTTATTTGCTCTC---ACTCA---TCAGGAAAAGAAAGTTGTCCTGAAGAAATCAGTGAGTTTAATGTCATCACATTCTCAAGTGAATtttgagaaggaaaacaaacattgGAGA------------C-TGTCTGAACAAGA--GAAC------------------ACATTGGCACAGAGGCTGTGATTAGCAAACGCTGATCGGGAATAGCATTCTTACCCCACCGGCTCTGCG----TAAATTTTGCCATTCA----CTT-TACCAG--CTAGTGCCTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81187684 1466 + 108555830 TG--------------------------------ACTCATTTCTTT--------TTTTGCAACATAAATAATGTTGTAAAATCAGAAATAAACTTGCTATTATGGCCCTAGTTTGAAATAAGGCTTGATGCCTTCATTTTAAAACtttttccggttatataagtgat--acgttcaatgcagaagaattagaaaattcagagacatgaaatgaattaaaatgccctcagccaacttcacaaaggggaggactactaacattaaag-gtttactatcttttcgacctttttctaagcacatacattgatacatgtctatatctatGTATGTATTTCAGAAGCTACGAGCACTTTCAGTACTGactatccggccaagtagataaaattatctccgtatttacagacaagaagagag---------aaaacagagtgtccaagaaattggaca--t-ttttttctaggtcacacagctggtgaatgccagagAACTTAGTAACTAAGTTCGTGGACTAAAATCTGACCCAAAGCTGAGGAAGGAGGCCCAGCTCTGTCTGAGGACCCCGTAGCACCACTAGAATCAGTGGGTGCAGCAATATGGTTGCTA------TAATATTGCCATAAAGATTTG----GAGCTATAAGTAGAGTCTCGGTTACCCCA-AGTTATTAATGTCCCTCACTTTTCACTTTGTGCGTCTTGCAATATCTTCTCCAGTTCCCTTTAAAGTGCCA----------GAGAAGCAGATTATTCCTCTGGATGGGTTTCGGTGGTGCCATCTGCTAGCCTGATGTAGA--GCTGCAGAGAAC---AGGGTTGGGTCTTAGTTTCTGATGTGTTTCATCTACTGATGGCGTGCCTGCCTCTCCCCACATCCCCTTCCTATTTACCTCCCCT-----ATCTCCCCCTGA-----------------------AAAAAAGCACTCTAGAGAGAGCACAGTGTCTTTTGCAGAATGTGTGCTATTTCCTATCCCAAAGACCAACCAGGTCTTGATTTGTTCTTGCAGCTCAGTGGAAAATTTTCTGTGAGTTTGGGTTATGAGGAGGAAAAGAAATGCATGTACTGCTTCAAAAGTT-----TCCTATCAAAGTCAGATGAGTCCCC------------------------------------------------------------------------------------------CCCCACACACTGACAGT-G-----------TTCTCTTTACCAACTCCTTTCATCCAACCATAAGCTCCTCGGGCAGCATTTGTCTGAATCAAACTTTGCTGAAT-TT--TTAAAAATCAATACTTGAAAGGTTACAACTGTGAACACGACTAAACCTCAATACACATCCTTTGGGTCAACACATGT--GATTTTGCTCTACCAATCTGAACTATT-CACTGGTGTTATTTGCTCTC---ACTCA---TCAGGAAAAGAAAGTTGTCCTGAAGAAATCAGTGAGTTTAATGTCATCACATTCTCAAGTGAATTTTGAGAAGGAAAACAAACATTGGAGA------------C-TGTCTGAACAAGA--GAAC------------------ACATTGGCACAGAGGCTGTGATTAGCAAACGCTGATCAGGAATAGCATTCTTACCCCACCAGCTCTGCG----TAAATTTTGCCATTCA----CTT-TACCAG--CTAGTGCCTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111421165 1517 - 210400635 AGGAAGGTAGG----------------------AATTCA--TCTTT--------CTTTGCAACATAAATAATATCATAAAATCAAAAATAAACTTGCAGTTATGGCCCTAGTTTGAAACAAGCCTTGGTGCCTTTGTTTTAAAATGTTTTCCAGTTACATAAGTGAT--GTGTTCAATGCAGAAGAATTAGAAAATTTAGAGAAATGAAATGAATTAAAATGTCCTAAGCCAACTTTGCCAAGGGGAGGACTACTAACATTAAAG-GTCTACAATCTTGTCGACCTTTTTCTGAGCACATACATTAGTACATGTTTATATGTATGTCTGTATTTCAGCACCTATGAGTACTTTCAGTACTGactatccagccaagtagataaaattatctccgtatttacagacaagaagaaag---------aaaacagagtgcccaagaaattggacattt-ttttttctaggtcacacagctggtgaatgccagagtacttagtaactaagttcctggactAAAATCTGACCCAAAGCTGAGAAAGGAGGCCCAGC----TCTGAGGACCCCATAAGAGTTCTAGAATCAGTGGGTGCAGCAATGTGGTTGCTG------TAAGATTGCTATAAAGATTTG----GAGCTATAAGTAAAGTCTCAGTTACCCCA-AGTTATTAATATCCCCCG--TTTCACTTTGTGCTTTTTACAATATCTTCTCCAGTTCCCTTTAAAGTGCCA-------------AAGCAGCTTATTCCTCTGGATGGGTTTCGGTGGTGCCATCTGCTAGCCTGATGTAGA--GCTGCAGAGAAC---AGGGTTGGGTCTTGGTTTCTGATATGTTTCATCTACTGAGGACATGCCTGCCTCTCCCCACAT-CCCTTCCTATTTACCTCCCCTC----ACCACCCTGCaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGCACTCTAGAGAGAGCACAGTGTCTTTTGCAGAATGTGTGCTATTTCCTATCCCGAAGTCCCACCAGGTCTCCATTTGTTCTTGCAACCCAGTGGAAAATTTTC--------TGGGCTATAAGGAGAAAAAAAAATGCATGTACTGCTTCAAAAGTT-----TTCTATCAAAGTCAAATGAGT-CCC------------------------------------------------------------------------------------------ACGCACACACTGACAGC-ATTCTCTTTACCTTCTCTTTACCAGCTCCTTTCATCCAACGATAAACTCCTCTGGCAACGTTGGTCTGAATCACACTTTGCTGAAT-TT--TTAAAAATCAGTACTTGAAAAGTTATAACTCTGGATGCTACTAAACCTCAATACACATCCTTTGGGTCAACACATGT--GATTCTGCTCTATTAGTCTGAACTACT-CACTGGTGCTATTTGCTCTC---ACTCATTGTCAGGAAAAGAAACTTGTCCTGAAGAAGTCAGTGAGTTTAGTGTCACCACATTCTCAAGTGAATTTTGAGAAGGAAAATAGACATTGCAGA------------C-AGTCTGAACAAGA--GAACAGAGGCTCTGAACAGAGAACATTGGCACAGAGGCTGTGATTAGCAAACGCTGATCAGGAATGGCATTCTTACCGCATCAGCTCTGCA----TAAATTCTACCATTCACTTTCTT-TACCAG--CTAGTGCCTT i calJac3.chr1 C 0 C 0 s mm10.chr19 38069562 1502 - 61431566 TA--------------------------------ACTTACTTTCTT--------CTTTGCAACAAAAACAATGTTATAAAATCAGAAGTAAACTTATCATTACAGCCTTAATTTGAAACAAATCTTGGGGTTCTTACATTACAACTTTTTACAATTATATATGTGATAAATATCCAAAGCAAAAGAATTAGAAAATTCAAAGAAAAAAAAGAAACTAAG------TTAAACAA-----CAATGGCAATGACGATTGACTTTAGAGTGTTTACTG--TGATAGACCTTTCATTAAGCACATATCCAAATCTATAGCTCTAGCTGTGTGTGTCTTTCAGAA--CATGCTTATCTAAAGTAC---------------ATATATAAAATTATGCCCATATTCAGAGG-ACAAAGGAGG---------AAAGAGAAACATCCAAGAAGTCTGACA--TCTTTTTTCTAGGTCACACAGCTGAGAGATGCCAGAGAGCTTAGGG---GACTTCCTAGACTAGAATCTAATATGCAGCTGTAGGAAAAGCTTCAG-TCTATCAGAGACCCCCACCAGGCCAC---AAGCTGGGGGTGCAGCATCATAGTTGCTACGTGTGTAAGACTGGTATGAGCATTTGCACCTAGCTATAAGGAGAGTCCTAGTTG--CCA-TGGCATTAATACCCGCTCCATTTCACTTTGTACTCTCTGCAGTATCTTCTCCAGCTCCCTTTAGAGAAC-------------AGAACTCGCTTATTCCTCTGGCTGCTTTTCAATGGCGCCATCTGCTAGCCTGCTGCAGA--ACTGGAGAAGGC---TGGCTT-GGTCTCCATTTCCAATGTGCTCTGTCTGCTGCTAGTGTGCCTGACACTCCTC-CACCTCCTTC--ATCTCCCTCTC-------ATCTCCTGAACC-----------------------CCAAACAGCCCCCAGAGAGAGCACAGTGCCT-TTGTAGAATGTGTGCTATTTCCTGTCACAAAGTCTGACCAGGCTTTGATTTGCTCATACAGCCCAGTGGAAATTTTTCTATGACTTTG-GTTACAAGAAGGAAAAGAAATG------CTGCCCCAGAACATATTCCTTCTATTAAAGTCAAATGAGT-CACATGGTAATGCACAGGCAGGCAGGCATGTGTatacacatgtgcatgcacacacaggcacacacacgcacacacatgtgtgtatgcatacatacacacacaTGGATAGT-G-----------TTTTCTTTACCAACTCCTTAATTACAAT-ATAAACTCTTTAGGCAACATTTGCATGAATAGAGCACTGCTAAATATT--TTTTAAATCGGCACTC-AAAAGTCATATTGCTGAGTACTACTA-ACCGTACCATTCCT-CTTTGGATCCACATGTGTGGGATTTTGCTCCGCTTGTCTAAGTCTGT-CATTTGGGTTGTTTGCTCTT---CCTAATTGCCAAGAAAAGGAATTGGCACTGGAGAAATCACAAGG---AATGT-------------GGTGCATTTCAAG-AGGAAAATAAACAT---AGA------------CTTTTCTGAAC-AGA--GAAC------------------CC--TGGCATATGTGCTGTGACT-GCAGACCCGTGTCAGAAAGAGC-TCCTTAATCTCTCTGCTCAATA----TGAACAAAGTCTTTCCCCTTCTTCTAACAGTTCCAATGTCTT i mm10.chr19 I 1698 I 22 s canFam3.chr1 35309884 1474 - 122678785 ---agagaaggaaaaaagaaaaaaaaaaaagCCAACTTATTTTCTTCTCTCCACCTTTACAATATAAAGAATGTCATAAAAATAAG---AGATTTATGATTGTGGCCCCACTTTGAATCAAGCCTGGGTGCTTTTGTTTTAAAACTTTTTATGGTTATGTGAGTGATAAATATCCAGTGCAGAAGAATGAGAAGATTTAGGAAAGCAAAACATGCTAAAACGGCCCAGGCTGACCCTGCAAGGATGAGAAC-ACTAACATTGTGGTGTTTGTTAT-TATGCGCCTTCTTTCTAAGCACATA------TACACACCTGTATCTATGT-TATATTCCAGCACTTAC----------------GACAATCCAG---AGTAGATAAAATTATCCCCACATT-ACAGATAAGAAAGGAGAAAAAAAAAAAAAAAGAGAGCCCCAGCACTTGATGT--T-TTTTATCTAGGTCATACAGCTGGTGAGTGCCAG-GCATGTAGGA---AAATTC-TGGACTAAATTCTGACCTAGAGCTGAAGGCAGATGCCTAGATCTGTCTGAGGACTCCAGAGGGCTACTAGAATCAATGGGTGCAACATTGTGCTTGCAG----------------------ATTTG----GGGCTGTATGTAGAGTCTCAGTTACCACAGATTTATACATATTCCTTCCTTTTCACTTTGTGCTTTTC-TAAGGTCTCCTCTAGTTCCCTTTAAAGTGCAAAAGAAGGCAAAAGAAGTGGATTCTT-CTTTGCATGCTTTTTGGTGATGCCATCTGCTCACCTGATGTGGGGCGCTTCAGAGAGCGTTGGGATTGGA--TGGGTTTGTGACATGTTCTGTCCACTGAAGACAGGCCTGCCACTCCCT-TGGCCCCTTC--AGCTCCCGCCCT------ACACCCCCATAC------------------------------AGCTCCAGAGATAGCACACT----------GGATGTGTGCTCTTTCCTCTCCCAAAGTCTGACGAGGCCTTGATTTGCTCTTGCAGGCCAGTGGAAAATTTTTT-TAAGTTTGAGTTATAGGGAGGAAAAGAAATGCACATACTGTTTCAGAAAGTTTTCCTTCTATTAAAGTCAAATGAGT---C------------------------------------------------------------------------------------------ACACACACAATGACGACAG-----------TTTCTTTTGCAAACTCCTTCCATCCGACCATAAACTCCTTGGGCAACATTTGTGTGAGTGCGGCTCTGCTGAAT-TTTCTTTTACATCCGTGCTTGAAAAGTCACAATCCTGGACACTACTACACTTCAGTATGTATCCCTCGGGTTCCCATGTGT--G--TTTGCTCCAGCAATCTGACTCATGATGCTGCTACTGTTTGCTAGTGGAAATTG---CCAGCAAGAGAAACTCGCTCCGCAGAAATCAGTGAATTGAATGTCACCATATTCTCAAATGAATTTTAAAAAGGAAAACAAACATCTAAGAACCTCCCCCACCC-TTTCCAAATAAGAGGGAAC------------------ACGCTGGCACATGGGCTGTGATTTGCAAATTTGGATCAGAA---GCATTCTTACCCCACCTGCTCAGTAAGACCAAGCTCCATCATTCA----CTT-TATCAG--CGGGCACCCT i canFam3.chr1 C 0 C 0 a score=1123085.000000 s hg38.chr9_GL383541v1_alt 104209 336 + 171286 GAGAGCTAAATGTCATGGACCTGTGTTAAGTTTGTAATGTTAATTTGCCCCCTTCTCATAAGTCCACATCTTTTCCTTC-ATTCATAGCCCTTCC---CCCTTGGCAAAGACAAACTTCTAGGCTTCCCCGTGGATTTTGGAGAGTTTAGGTACCAGGTCCttatgggaccattactgttaaggtgaaaggtac-tttaagaactattttgtccaaactctttttcttttcaaaaaatgaagaaaccgagggct---ggagaagaatgggcctgctcaagctaattagtggctagctaggctggaaccTGAATAGAAGTTCAAGAGGGAGTCAACCTGCAG-AAA s panTro4.chr9 68669649 335 + 137840987 GAGAGCTAAATGTCATGGACCTGTGTTAAGTTTGTAATGTTAATTTGCCCC-TTCTCATAAGTCCACATCTTTTCCTTC-TTTCATAGCCCTTCC---CCCTTGGCAAAGACAAACTTCTAGGCTTCCCCGTGGATTTTGGAGAGTTTAGGTACCAGGTCCttatgggaccattactgttaaggtgaaaggtac-tttaagaactattttgtccaaactctttttcttttcaaaaaatgaagaaaccgagggct---ggagaagaatgggcctgctcaagctaattagtggctagctaggctggacccTGAATAGAAGTTCAAGAGGGAGTCAACCTGCAG-AAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64825560 335 + 135191526 GAGAGCTAAATGTCATGGACCTGTGTTAAGTTTGTAATGTTAATTTGCCCC-TTCTCATAAGTCCACATCTTTTCCTTC-ATTCACAGCCCTTCC---CCCTTGGCCAAGACAAACTTCTAGGCTTCCCCTTGGATTTTGGAGAGTTTAGGTACCAGGTCCttatgggaccattactgttaaggtgaaaggtac-tttaagaactattttgtccaaactctttttcttttcaaaaaatgaagaaaccgagggct---ggagaagaatggatctgctcaagctaattagtggctaactaggctggaaccTGAATAGAAGTTCAAGAGGGAGTCAACCTGCAG-AAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57861639 335 - 122973662 GAGAGCTAAATGTCATGGACCTGTGTTAAGTTTGTAATCTTAATTTGCCCC-TTCTCGTAAATCCACATCTTTTCCTTC-ATTCACAGCCCTTCC---CCCTTGGCAAAGACGAACTTCTAGGCTTCCCCTTGGATTTTGGAGAGTTTAGGTACCAGGTCCCTATGGGACCATTACtgttaaggtgcaaggtac-tttaagaactattttgtccaaacgttttttcttttcaaaaaatgaagaaactgagggct---ggagaagaatgggcctgctcaagctaattagtggctaactaggctggaaccTGAATAGAAATTCAAGAGGGAGTCAACCTGCAG-AAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79795224 334 + 112192347 GAGAGCTAAATGTCATGGACCTGTGTTAAGTTTGTAATCTTAATTTGCCCC-TTCTCATAAGTCCACATCTTTTCCTTC-ATTCACAGCCCTTCC---CCCTTGGCAAAGACAAATTTCTAGGGTTCCCCTTGGATTTTGGAGAGTTTAGGCACCGGGTCCCTGTGGGACCATTACtgttaaggtgaaaggtac-tttaagaactattttgtccaaactctttttcttttcaaaaaatgaagaaactgagggct---ggagaagaatgggcctgctcaagctaattagtggctaactaggctggaaccTGAACAGAAGTTCAAGAGGGAGTCAACCTGCAG--AA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80875219 336 + 112612857 GAGAGCTAAATGTCATGGACCTGTGTTAAGTTTGTAATCTTAATTTGCCCC-TTCTCATAAGTCCACATCTTTTCCTTC-ATTCACAGCCCTTCC---CCCTTGGCAAAGACAAATTTCTAGGGTTCCCCTTGGATTTTGGAGAGTTTAGGCACCGGGTCCCTGTGGGACCATTACtgttaaggtgaaaggtac-tttaagaactattttgtccaaactctttttcttttcaaaaaatgaagaaactgagggct---ggagaagaatgggcctgctcaagctaattagtggctaactaggctggaaccTGAACAGAAGTTCAAGAGGGAGTCAACCTGCAGAAAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76924230 335 + 107442819 GAGAGCTAAATGTCATGGACCTGTGTTAAGTTTGTAATCTTAATTTGCTCC-TTCTCCTAAGTCCACATCTTTTCCTTC-ATTCACAGCCCTTCC---CCCTTGGCAAAGACAAATTTCTAGGGTTCCCCTTGGATTTTGGAGAGTTTAGGCACCCGGTCCCTGTGGGACCATTACTGTTAAGGTGAAAGGTAC-TTTAAGAACTATTTTGtccaaactctttttcttttcaaaaaatgaagaaactgagggct---GGAGAAGAATGGGCCTGCTCAAGCTAATTAGTGGCTAACTAGGCTGGAACCTGAATAGAAGTTCAAGAGGGAGTCAacctgcag-gaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81189150 335 + 108555830 GAGAGCTAAATGTCATGGACCTGTGTTAAGTTTGTAATCTTAATTTGCCCC-TTCTCATAAGTACACATCTTTTCCTTC-ATTCACAGCCCTTCC---CCCTTGGCAAAGACAAATTTCTAGGGTTCCCCTTGGATTTTGGAGAGTTTAGGCACTGGGTCCCTGTGGGACCATTACtgttaaggtgaaaggtac-tttaagaactattttgtccaaactctttttcttttcaaaaaaggaagaaactgagggct---ggagaagaatgggcctgctcaagctaattagtggctaactaggctggaaccTGAATAGAAGTTCAAGAGGGAGTCAACCTGCAG-GAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111422682 330 - 210400635 GAGAGCTAAATGTCATGAACCTGTGTTAAGTTTGTAATCTTAATTTGCCCC-TTCTCATAAGTCTATA-CCTTTCCTTC-ATTCACAGCCCTT-T---CCCTTGGCAAAGATAAACTTCTAGGATTCCCCTTGGATTTTGGAGAATTTAGGTACCAGGTCCCTGTGGAAGCATTGCtgttaaggtgaaagatacttttaagaactattttgtccaaac--tttttcttttc-aaaaatgaagaaactgaggcct---ggagaaaaatggacctgctcaaactaattggtggctaa-taggctagaacctggatAGAAGCTAAAGAGGGAGTCAACCTGCAG-Gaa i calJac3.chr1 C 0 C 0 s canFam3.chr1 35311358 319 - 122678785 GAAAATGAAATGTCACGGACCTGAGCTATGTTTGTGGAGTCCA-TGGCCCC-TTCTCACTGGTCCATGTCTGTCCCCTCTGTTCTCAGCCTCCCCCCACCTTTGCCAGCAGCAAACATCCAGGCCCCCTCTTAGATTTTGCAGAATCCAAG-----GGTC--TGTAGGACCACCGTTTTTGAGCTGA-----AC-----AGgaccatcttgtccacactctttctttc-----aaaactagggaaacgaagacttagggaaaggaaggaacctgcTGGGGCTCATTGGTGGCTAAGTAGGCTCAAACCTGGATAGGAGTTCCAGA-GAAGTCAACCTGGAG-AAA i canFam3.chr1 C 0 I 149 e mm10.chr19 38071064 22 - 61431566 I a score=2470863.000000 s hg38.chr9_GL383541v1_alt 104545 819 + 171286 AAAAAAA---------AATTAtttttgaaacagggtctcactctgtcacccaggctggagtgcagtggagtgatcttggctcactgcaacctctgcctcccaggttcaagcagtcctctcacctcagcctcccaagtagttgggactacaggcatgtgccaccacacccagctaatttttgtattttttgtaaagatgaggtttcgccatgttgcccaggctggtctcaaactcctgagctcaaatgatccgcccacctcaggctctcaaagtgctggaattacaggcatgaaccactgcggccaaccAACCTTCAGAAAAAGATAGAAAattagttcagagcttgttatgtgcctgactctgtgctcggatatttgtata--------cattatctcatttaatctcctcaacagtcctacaagacaggtgttttatagataagaaaactgagaccctgggaggttaactgattgatatggtttggctgtgtccccaccaaaatctcatcttgaattcccacgtgttgtaggagggacccagtgggaggtaattaaattatgggggcagttctttctcatgcctttctcgtgatagtgaataagtctcataagatctgacagttttataaggatgagtttccctgcacaagctctcttctcttctctttgcctgcttccatccacataagatgtgacttgctcctctttgccttctgccatgattgtgaggcctccccagccacatggaactgtaagtccattaaactctttttccagtataaattacccagtctcggtatgtctttatcagcagcattgaaacagactaataca s panTro4.chr9 68669984 817 + 137840987 AAAAAAA-----------TTAtttttgaaacagggtctcactctgtcacccaggctggagtgcagtggagtgatcttggctcactgcaatctctgcctcccaggttcaagcagtcctctcacctcagcctcccaagtagttgggactacaggcatgtgccaccacacccagctaatttttgtattttttgtaaagatgaggtttcgccatgttgcccaggctggtctcaaactcctgagctcaaatgatccacccacctcagcctctcaaagtgctggaattacaggcatgaaccactgtggccaaccAACTTTCAGAAAAAGATAGAAAattagttcagagcttgttatgtgcctgactctgtgctcggatatttgtata--------cattatctcatttaatctcctcaacagtcctacaagacaggtgttttatagataagaaaactgagaccctgggaggttaactgattgatatggtttggctgtggccccaccaaaatctcatcttgaattcccacgtgttgtaggagggacccagtgggaggtaattaaattatgggggcagttctttctcatgcctttctcgtgatagtgaataagtctcataagatctgacagttttataaggatgagtttccctgcacaagctctcttctcttctctttgcctgcttccatccacataagatgtgacttgctcctctttgccttctgccatgattgtgaggcctccccagccacatggaactgtaagtccattaaactctttttccagtataaattacccagtctcggtatgtctttattagcagcattgaaacagactaataca i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64825895 828 + 135191526 AAAAAAAA--------AATTAtttttgaaacagggtctcactctgtcacccaggctggagtgcagtggagtgatcttggctcactgcaacctctgcctcccaggttcaagcaatcctctcacctcagcctcccaagaagttgggactacagtcatgtgacaccacacccagctaatttttgtattttttgtaaagatgaggtttcaccatgttgcccaggctggtctcaaactcctgagctcaaatgatccgcccacctcagcctcccaaagtgctggaattacaggcatgagccactgcggccaaccAACCTTCAGAAAAAGATAGAAAattagttcagagcttgttatgtgcctgactctgtgctcgaatatttgtatacattatctcattatctcatttaatctcctcaacattcctacaagacaggtgttttatagataagaaaactgagaccctgggaggttaagtgattgatatggtttggctgtgtctccaccaaaatctcatcttgaattcccacatgttgtgggagggacccagtgggaggtaattgaatcatgggggcagttctttctcatgcctttctcatggtagtgaataagtctcataagatctgacagttttataaggatgagtttccgtgcacaagctctcttctcttctctttgcctgcttccaaccacataagatgtgacttgctcctctttgcctcctgccatgattgtgaggcctccccagccacatggaactgtaagtccattaaactttttttccagtataaattacccagtctctgtatgtctttatcagcagcattgaaacaaacaaataca i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57861974 819 - 122973662 AAAAAAA---------TATTAtttttgaaacagggtctcactctgtcacccaggctggattgcagtggagtgatcttggctcactgcaaccgctgcctcccaggttcaagcaatcctctcacctcagcctcccaagtagttgggactacaggcttgtgccaccacacccagctagtttttgtattttttgtaaagatgaggtttcaccatgttgcccaggctggtctcaaactcctgagctcaaatgatccgcccacctcagcctcccaaagtgctggaattacaggcatgagccactgtggctgaccAACCTTCAGAAAAAGATAGAAAattagttcagagcttgttatgtacctgactctgtgcttggatatttgtata--------cattatctcatttaatctcctcaacagtcctacaagacaggtgttttatagataagaaaactgagaccctgggaggttaagtgattgatatggtttggctgtgtccccacccaaatctcatcttgaattcccacgtgttgtgggagggacccagtgggaggtaattgaatcatgggggcagttcttttccatgcctttctcgtgatagtgaataagtctcacaagatctgacagttttataaggatgagtttccctgcataagctctcttctcttctctttgcctgcttccatccacataagatgtgatttgttcctctttgccttctgccatgattgtgaggcttccccagccatgtggaactgtaagtccattaaaccctttttcctgtataaattacccagtctcggtatgtctttatcggcagcgtgaaaacagactaacaca i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79795558 825 + 112192347 AAAAAAAAAAAAT---TATTAtttttgaaacagggtctcactctgtcacccaggcaggagtgcagtggagtgatcttggctcactgcaacctctgcatcccaggttcaagcaatcctctcacctcagcctcccaagtagttggaactacaggcatgtgccaccacacccagttaatttttgtattttttgtaaagatgaggtttcaccatgttgcccaggctggtctcaaactcctgagcttaagtgatccgcctacctcagcctcccaaagtgctgggattacaggcgtgagccactgAGGCCAACTAACCTTCGGAAAAAGATAGAAAattagttcagagcttgttatgtgcctgactctgtggttggatatttgtaga--------cattatctcatttaatctcctcaacagtcttacaagacaggtgttttatagataagaaaactgagaccctgggaggttaagtgattgatatggtttggctgtgtccccacccaaatctcatcttgaattcccacgtgttgtgggagggacccagtgggaggtaattgaatcatgggggcagttctttcccatgcctttctagtgatagtgaataagtctcgcaagatctgttagttttataaggatgagtttccctgcacaagctctcttctcttctctgtgcctgcttccatccccataagatgtgacttgctcctctttgccttctgccgtgattgtgaggcctccccagccacatggaactgtaagtccattaaacccttttccctgtgtaaattaaccagtcttggtatgtctttatcagccgcgtgaaaacagactaataca i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80875555 825 + 112612857 AAAAAAAAAAAAT---TATTAtttttgaaacagggtctcactctgtcacccaggcaggagtgcagtggagtgatcttggctcactgcaacctctgcctcccaggttcaagcaatcctctcacctcagcctcccaagtagttggaactacaggcatgtgccaccacacccagttaatttttgtattttttgtaaagatgaggtttcaccatgttgcccaggctggtctcaaactcctgagcttaagtgatccgcctacctcagcctcccaaagtgctgggattacaggcgtgagccactgAGGCCAACTAACCTTCGGAAAAAGATAGAAAattagttcagagcttgttatgtgcctgactctgtggttggatatttgtaga--------cattatctcatttaatctcctcaacagtcttacaagacaggtgttttatagataagaaaactgagaccctgggaggttaagtgattgatatggtttggctgtgtccccacccaaatctcatcttgaattcccacgtgttgtgggagggacccagtgggaggtaattgaatcatgggggcagttctttcccatgcctttctagtgatagtgaataagtctcgcaagatctgttagttttataaggatgagtttccctgcacaagctctcttctcttctctgtgcctgcttccatccccataagatgtgacttgctcctctttgccttctgccgtgattgtgaggcctccccagccacatggaactgtaagtccattaaacccttttccctgtgtaaattaaccagtcttggtatgtctttatcagccgcgtgaaaacagactaataca i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76924565 825 + 107442819 aaaaaaaaaaaat---tattatttttgaaacagggtctcactctgtcacccaggcaggagtgcagtggagtgatcttggctcactgcaacctctgcctcccaggttcaagcaatcctctcacctcagcctcccaagtagttggaactacaggcatgtgtcaccacacccagctaatttttgtattttttgtaaagatgaggtttcaccatgttgcccaggctggtctcaaactcctgagcttaagtgatccgcctacctcagcctcccaaagtgctgggattacaggcgtgagccactgaggccAACCAACCTTcggaaaaagatagaaaattagTTCAGAGCTTGTTATGTGCCTGACTCTGTGGTTGGATATTTgtaga--------cattatctcatttaatctcctcAACAGTCTTACAAGACAGgtgttttatagataagaaaactgacaCCCTGGGAGGTTAagtgattgatatggtttggctgtgtccccacccaaatctcatcttgaattcccatgtgttgtgggagggacccagtgggaggtaattgaatcatgggggcagttcttTCCCATGCCTttctagtgatagtgaataagtcttgcAAGATCTGTTAGTTTTATAAGGatgagtttccctgcacaagctctcttctcttctctgtgccTGCTTCCATCcccataagatgtgacttgctcctctttgccttctgccatgattgtgaggcctccccagccacgtggaactgtaagtccattaaaccctttTCCCTATgtaaattaaccagtcttggtatgtctttatcagccgcgtgaaaacagactaataca i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81189485 817 + 108555830 AAAAAA-----------ATTAtttttgaaacagggtctcactctgtcacccaggcaggagtgcagtgaagtgatcttggctcactgcaacctctgcctcccaggttcaagcaatcctctcacctcaacctcccaagtagttggaactacaggcatgtgccaccatacccagctaatttttgtattttttgtaaagatgaggtttcaccatgttgcccaggctggtctcaaactcctgagcttaagtgatccacctaactcagtctcccaaagtgctgggattacaggcgtgagccactgaggccaaccAACCTTCGGAAAAAGATAGAAAattagttcagagcttgttatgtgcctgactctgtggttggatatttgtaga--------cattatctcatttaatctcctcaacagtcttacaagacaggtgttttatagataagaaaactgagaccctgggaggttaagtgattgatatggtttggctgtgtgcccacccaaatctcatcttgaattcccacgtgttgtgggagggacccagtgggaggtaattgaatcatgggggcagttctttcccatgcctttctagtgatagtgcataagtctcgcaagatctgttagttttataaggatgagtttccctgcacaagttctcttctcttctctgtgcctgcttccatccccataagatgtgacttgctcctctttgccttctgccatgattgtgaggcctccccagccacatggaactgtaagtccattaaacccttttccctgtgtaaattaaccagtcttgggatgtctttatcagctgcgtgaaaacagactaataca i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111423012 818 - 210400635 aaaatatatatatatatataatttttgaaacaggg-ctcattctgccacccaggcttgagtgcagtggcatgatcttggctcagtgcaacttttgcctcgcaggtttaagcaatcctctcatctcagcctcccaagtacttgggactacaggcatgtggcaccacactcagctaatttttgcattttttgtagagatgaggtttcaccatgttgcccagtct-gtctggaactcctgagctcaagtgatctgtccacctcagtctccaaaagtgctgggattacaggcatgagccactgcAGTCAAGCACCCTACAGAAAAAGATGTAAAattagttcagagcttattttgtgcctgattctgtgatcagatatttgtata--------cattatcacatttaat---ctcaacagtcctacaagacaggtgttttataggtaagaaaactgagaccctgggaggttaagtgattgatatggtttggctgtgtccccacccaaatctcatcttgaattcccacatattgcaggagggacccag-ggaaagtaattgaatcatgagggtagttctttcccatgctgttctcatgagagtgaataagtctcatgagatctgacagttttataaggatgagtttccctgcacaagctttcttc---tctcttttcctgctgccatccaaataagatgtga-ttgcctctccttgccttctgccgtgattgtgaggcttccccagccacatggaactgtaagtccatcaaaccctttttcctgtataaatgacccagtctcagtatgtctttatcagcagcttgaaaacagactaataca i calJac3.chr1 C 0 C 0 e mm10.chr19 38071064 22 - 61431566 I e canFam3.chr1 35311677 149 - 122678785 I a score=934492.000000 s hg38.chr9_GL383541v1_alt 105364 277 + 171286 gtgatatatccaggcccacctagctaataagtgatgaaaatgggatttgaactctggtctgtctgcttccaagaaactattctattcaGAAGAAG-CTGCAAACTAGAAGCCTAGAGGTCAAATCTAGTCCACAGTGGTGATCTGTCTGGCT-------------GTGGAGTGGGGTTTTTCA--------TTTTATTTTtgttttaattttttaattaattgccagcattgacaaactcaaagattt--cagataaaatctagag--tcagatcctcttgataatttgctagatacagagac s panTro4.chr9 68670801 277 + 137840987 gtgatatatccaggcccacctagctaataagtgatgaaaatgggatttgaactctggtctgtctgcttccaaGAAACTATTCTATTCAGAagaag-ctgcaaactagaagcctagaggtcaaatctagtccacagtggtgatctgtctggct-------------gtggagtggggtttttca--------ttttatttttgttttaattttcgaattaattgccagcattgacaaactcaaagattt--cagataaaatctagag--tcagatcctcttgataatttgctagatacagagac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64826723 277 + 135191526 gtgatatatccaggcccacctagctaataagtgatgaaaatgggatttgaactctggtctgtctgcttccaaGAAACTATTCTATTCAGAagaag-ctgcaaactagaagcctagaggtcaaatctagtccacagtggtgatctgtctggct-------------gtggagtggggtttttca--------ttttatttttgttttaatttttgaattaattgccagcattgacaaactcaaagattt--cagataaaatctagag--tcagatcctcttgataatttgctagatacagagac i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57862793 272 - 122973662 gtgatatatccaggcccacctagctaataagtgatgaaaatgggatttgaactctgttctgtctgcttccaaGAAA-----CTATTCAGAAGAAG-CTGCAAACTAGAAGCCTAGAGGTCAAATCTAGTCCACAGTGGTGATCTGCCTGGCT-------------GGGGAGTGGGGTTTTTTG--------TTTTACTTTtgttttaatttttgaattaattgccagcattgacaaactcaaagattt--cagataaaatccagag--tcagatcctcttgataatttgctagatacagagac i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79796383 272 + 112192347 gtgatatattcaggcctacctagctaataagtgatgaaaatgggatctgaactctggtctgtctgcctccaggaaaccATTCTATTCAGAagaag-ctgcaaactagaagcctagaggtcaaatctagtccacagtggtgatctgtctggct-------------gtggagtgggatttttca--------ttttat-----ttttaatttttgaattaattgtcagcattgacaaactcaaagattt--caaataaaatctagag--tcagatcctcttgataatttgctagatacagagac i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80876380 272 + 112612857 gtgatatattcaggcctacctagctaataagtgatgaaaatgggatctgaactctggtctgtctgcctccaggaaaccATTCTATTCAGAagaag-ctgcaaactagaagcctagaggtcaaatctagtccacagtggtgatctgtctggct-------------gtggagtgggatttttca--------ttttat-----ttttaatttttgaattaattgtcagcattgacaaactcaaagattt--caaataaaatctagag--tcagatcctcttgataatttgctagatacagagac i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76925390 272 + 107442819 gtgataTATCCAGGCCTACCTAGCTAATAAGTGATGAAAATGGGATCTGAACTCTGGTCTGTCTGCCTCCAGGAAACCATTCTATTCAGAAGAAG-CTGCAAACTAGAAGCCTAGAGGTCAAATCTAGTCCACAGTGGTGATCTGTCTGGCT-------------GTGGAGTgggatttttca--------ttttat-----ttttaatttttgaattaattGTCAGCATTGACAAActcaaagattt--caaataaaatctaGAG--TCAGATCCTCTTGATAATTTGCTAGATACAGAGAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81190302 272 + 108555830 gtgatatatccaggcctacctagctaataagtgatgaaaatgggatctgaactctggtctgtctgcctccaggaaaccATTCTATTCAGAagaag-ctgcaaactagaagcctagaggtcaaatctagtccacagtggtgatctgtctggct-------------gtggagtgggatttttca--------ttttat-----ttttaatttttgaattaattgtcagcattgacaaactcaaagattt--caaataaaatctagag--tcagatcctcttgataatttgctagatacagagac i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111423830 273 - 210400635 gtgatgtatccaggctcacctagctagtaagtgatgaaaatgagatttgaactctggactgtctgc-tccaaGAAAGTATTCTATTCAGAAGCAG-CTGCAAACTAGAAGCCTACAGGTCAAATCTAGTCCATGGTAGTGATCTGCCTGTCT-------------GTGGAATGTGGTTTTTTG--------TCTTGTTTTtgttttaacttttgaattaattt---gcattgacaaacccaaagattt--caaatgaaatctagag--tcagatcctcttgataatttgctggatacagagac i calJac3.chr1 C 0 C 0 s canFam3.chr1 35311826 295 - 122678785 gcaatgtattcaaggtcacctagt-----agtaccagaaatgggatttgaactgtggtccgtctgcctccaagacacccttctctttAGAAGAGGTTTGAAAACTAGAAGCCTAGGGGTCAGGTCCAGCCTACA---ACTATTTGCCTGGCTGCTCTCTAGAGTAGTGGGTTGGGTTTTTTCCCCTGTTTTTTCCATGTTTGTTTTAGTGtttaaataaatggccaacactgaaatagccaaagatttcccaggagaaatctagagatccaggtcctcttgacaatttggtaggtcctgacac i canFam3.chr1 I 149 I 2 e mm10.chr19 38071064 22 - 61431566 I a score=810667.000000 s hg38.chr9_GL383541v1_alt 105641 294 + 171286 attaggcctcgtatttgtttgctaggactgcccataacaaagtagcacaaaacaggtcgctt-aagaaacagaaattttgt-atgtcattgttctggaggccagaagttcatgatcaaggtgctggcagggcttgttccttctgagggccatgagagaaaatctgccctatgcctctctcccatttctggtggtgtgctggcaatctttggcattccttggcttgtagctctctgccttcattttcacatggcattctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg------------tga s panTro4.chr9 68671078 286 + 137840987 attaggcctcgtatttgtttgctaggactgcccataacaaagtagcacaaaacaggtcgctt-aagaaacagaaattttgt-atgtcattgttctggaggccagaagttcatgatcaaggtgctggcagggcttgttccttctgagggccatgagagaaaatctgtcctatgcctctctcccatttctggtggtgtgctggcaatctttggcattccttggcttgtagctctctgccttcattttcacatggcattctgtgtgtgtgtgtgtgtgtatgtgtgtgag--------------------a i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64827000 292 + 135191526 attaggcctcgtatttgtttgctaggactgcccataacaaagtagcacaaaacaggtggctt-aaaaaacagaaattttgt-atgtcattgttctggaggccagaagttcatgatcaaggtgctggcagggcttgttccttctgagggccgtgagagaaaatctatcctatgcctctctcccatttctggtggtgtgctggcaatctttggcattccttggcttgtagctctctgcattcattttcacatggcattctgtgtgtgtgtgtgtgtgtgtgtgtgtgtg--tgtg------------tgt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57863065 274 - 122973662 attaggcctcgtatttgtttgctaggactgcccataacaaagtagcacaaaagaggcggctt-aaaaaacagaaatgtcat-atgtcatcgttctggaggccagaagttcatgatcaatgtgttggcagggcttgttccttctgagggccgtgagcaagaatctgtcctatgcctctctcccatttctggtggtgtgctggcaatctttggcattccttggcttgtagctctctgccttcattttcacatggcattctgtgtgtgtatgtgtgtgt-------------------------------- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79796655 272 + 112192347 gttaggcctcgtatttgtttgctagggctgcccataacaaagtagcacaaaagaggtggcttaaaaaaacagaaattttgtaatgtcatcattctggaggccagaagttcatgatcaaggtgttggcagggcttgttcctcctgagggccatgagagagaatctgtcctatgcttctctcccatttctggtggtgtgctggcaatctttggcattccttggcttgtagctctctgccttcattgtcacatggcattcc----gtgtgtgtgtgtgt-------------------------------- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80876652 276 + 112612857 gttaggcctcgtatttgtttgctagggctgcccatgacaaagtagcacaaaagaggtggcttaaaaaaacagaaattttgtaatgtcatcattctggaggccagaagttcatgatcaaggtgttggcagggcttgttcctcctgagggccgtgagagagaatctgtcctatgcttctctcccatttctggtggtgtgctggcaatctttggcattccttggcttgtagctctctgccttcattttcacatggcattccgtgtgtgtgtgtgtgtgt-------------------------------- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76925662 286 + 107442819 GTTAGGCCTCGTatttgtttgctagggctgcccATAACAAAGTAGCACAAAAGAGGTggctttaaaaaacagaaattttgt-tTGTCATCATTCTGGAGGCCGGAAGTTCatgatcaaggtgttggcagggcttgTTCCTCCTGAGGGCCGTGAGAGAGAATCTGTCCTATGCTTCTCTCCCATTTCTGGTGGtgtgctggcaatctttggcattccttggcttgtagctctctgccttcattttcacATGGcattccgtgtgtgtgtgtgtgtgtgtgtgtgtgtg--------------------- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81190574 277 + 108555830 gttaggcctcgtatttgtttgctaaggctgcccataacaaagtagcacaaaagaggtggcttaaaaaaacagaaattttgt-atgtcatcattctggaggccagaagttcatgatcaaggtgttggcagggcttgttcctcctgagggccgtgagagagaatctgtcctatgcttctctcccatttctggtggtgtgctggcaatctttggcattccttggcttgtagctctctgccttcattttcacatggcattccgtgtgtgtgtgtgtgtgtgt------------------------------ i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111424103 302 - 210400635 attaggcctcatatttgtttactagggcttcccatatcaaagtagcccaaaagaagtggctt-aaaaaatgtaaatttcat-atgtcatagttctggaggccagaagttcatgatcaaggtgttggcagggcttgttcctcctgagggctgtgag----aatctgtcctatacctcactcccatttctggtggtgtgctggcaatctttggcattccttggcttatagctgtctgccttcattttcacatgacattctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctgtgtctgt i calJac3.chr1 C 0 C 0 e mm10.chr19 38071064 22 - 61431566 I e canFam3.chr1 35312121 2 - 122678785 I a score=644933.000000 s hg38.chr9_GL383541v1_alt 105935 209 + 171286 gagtgtctgcatccaaatttctcctttt--------tataaggacaccagtcgtttaaattagaggctcactctacttcagcatgaccttatcttaactaa-ttacatttgcggtgaccctattcccaaataaggtcacatactgagatactagaggttggcacttcaacac-aggaattgtgtgtgagggatgc-agggggacgcaggtcaa-cccataa s panTro4.chr9 68671364 209 + 137840987 gagtgtctgcatccaaatttctcctttt--------tataaggacaccagtcgtttaaattagaggctcactctacttcagcatgacctcatcttaactaa-ttacatttgcggtgaccctattcccaaataaggtcacatactgagatactagaggttggcacttcaacac-aggaattgtgtgtgagggatgc-agggggacacaggtcaa-cccataa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64827292 209 + 135191526 gagtgtctgcatccaaatttctcctttt--------tataaggacaccagtcatttaaattagaggctcactctacttcagcatgacctcatcttaactaa-ttacatttgcggtgaccctattcccaaataaggtcacatactgagatactagaggttggcacttcaacac-aggaattgtgtgtgagggatgc-ggggggacacagttcaa-cccataa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57863339 207 - 122973662 --gtgtctgcatccaaatttctcctttt--------tataaggacaccagtcgttcaaattagagtctcactctacttcagcatgacctcatcttaactaa-ttacatttgcggtgaccctattcccaaataaggtcacatactgagatattagaggttggcacttcaacac-aggaattgtgtgtgagggatgc-agggggacacagttcaa-accataa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79796927 201 + 112192347 --------gcatccaaatttctcctttt--------tataaggacaccagtcatttaaattggaggctcactctacttcaacatgacctcatcttaactaa-ttacatttgcggtgaccctattcccaaataaggtcacatactgagatactagaggttggcacttcaacac-aggaattgtgtgtgagggatgc-aggggggcacagttcaa-cccataa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80876928 201 + 112612857 --------gcatccaaatttctcctttt--------tataaggacaccagtcatttaaattggaggctcactctacttcaacatgacctcatcttaactaa-ttacatttgcggtgaccctattcccaaataaggtcacatactgagatactagaggttggcacttcaacac-aggaattgtgtgtgagggatgc-agggggacacagttcaa-cccataa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76925948 212 + 107442819 -tgagcacgcatccaaatttctcctttt--------tataaggacaccagtcgtTTAAATTAGAGGCTCACTCTACTTCaacatgacctcatcttaactaatttacatttgcaGTGACCCTAttcccaaataaagtcacatactGAGATACTAGAGGTTGGCACTTCAACACAAGGAATTGTGTGTGAGGGATGCaagggggacacagttcaaccccaTAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81190851 201 + 108555830 --------gcatccaaatttctcctttt--------tataaggacaccagtcgtttaaattagaggctcactctacttcaacatgacctcatcttaactaa-ttacatttgcggtgaccctattcccaaataaggtcacatactgagatactagaggttggcacttcaacag-aggaattgtgtgtgagggatgc-agggggacacagttcaa-cccataa i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111424405 210 - 210400635 gtatctctacatactaatttctcctttt--------tataaggacaccagtcatttaaattagaggctcactctactccagcacgacctcatcttaacaaa-ttatatttgcagtgaccctattcccaaataagatcacatactgaaatgctagaggttggcacttcaacac-aggaattgtgttggggggctgggcaagggacacagttcaa-cccataa i calJac3.chr1 C 0 C 0 s mm10.chr19 38071086 167 - 61431566 GAATGTACACATAAaaaccttcccttttataaagactataagaacatcagtcaattggaatagagacacacccttcaacaacatgacctcatcttaa-----ttatatttgcaa-aaccttactctccaatggggcagcaaactgagatcc----------------------a-------------agggattt------------ggTCAc-tgggtag i mm10.chr19 I 22 C 0 e canFam3.chr1 35312121 2 - 122678785 I a score=2099151.000000 s hg38.chr9_GL383541v1_alt 106144 700 + 171286 c-aggcctgacttcc-cacat-atcagcaattgatgaggctgagtgacagctgcccttttagaca-gggtttctgtctctatttcacaagaggctgca--c---------------cataccaagcccacttc-tgcatttctactacttgcctggactttgtaggcactgaagtttcaagccctgTTCCATGCTGCGTCTTCTCAGgttattaactcacaca-aga-ggaatgcatacctgggtgg-tttttccagcaca--------ggtgaag-gctgtgctg---acatctgattc--ccccatggtcacaggcagaaggtggttgactgagctcacagttaaagttgctggtagagaagaaagcaaaactaaAGGGGTTGAAGTCATTGG----CCCATGTTCTTTCT-AA--CCATTGGAACATACCTGGACATGCTGAGA----------------------TCGGGGT----TCTCACCTCTG-------------------ACTGC--TGC-ATCTTTGTCCAG-GCCTTGAT----GTAGAGT-T---CATATAGGAAGAAGTAAAGGAAC---TTAGAGGGTGTTTGCTCCTGAGGGATGGCAGGGAGGTAAAaaa--acaaaacaaaacaaaacaaaacaaaaaaacaaaaaaaa------------acCTGGCCTACTTT-----CT-----TAGCTGA-TTTTTCCTTTAAT--TGAAGTTCATAATGCTAATT---AGTTCTGTAGTTCTAGCAGAAATGACATAGGCACTTCAGCTGACATTCAAGGAAGAGGGGCATATCCATCAATAAAAGGCAACTT s panTro4.chr9 68671573 696 + 137840987 c-aggcctgacttcc-cacat-atcagcaattgatgaggctgagtgacagctgcccttttagaca-gggtttctgtctctatttcacaagaggctgca--c---------------cataccaagcccacttc-tgcatttctactacttgcctggactttgtaggcactgaagtttcaagccctgTTCCATGCTGCGTCTTCTCAGGTTATTAACTCACACA-AGA-GGAATGCACACCTGGGTGG-TTTTTCCAGCACA--------GGTGAAG-GCTGTGCTG---ACATCTGATTC--CCCCATGGTCACAGGCAGAAGGTGGTTGACTGAGCTCACAGTTAAAGTTGCTGGTAGAGAGGAAAGCAAAACTAAAGGGGTTGAAGTCACTGG----CCCATGTTCTTTCT-AA--CCATTGGAACATACCTGGACATGCTGAGA----------------------TCGGGGT----TCTCACCTCTG-------------------ACTGT--TGC-ATCTTTGTCCAG-GCCTTGAT----GTAGAGT-T---CATATAGGAAGAAGTAAAGGAAC---TTAGAGGATGTTTGCTCCTGAGGGATGGCAGGGAGGTAAAaaa--acaaaacaaaacaaaacaaaaaaaacaaa---aaaaaa------------ACCTGGCCTACTTT-----CT-----TAGCTGA-TTTT-CCTTTAAT--TGAAGTTCATAATGCTAATT---AGTTCTGTAGTTCTAGCAGAAATGACATAGGCACTTCAGCTGACATTCAAGGAAGAGGGGCATATCCATCAATAAAAGGCAACTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64827501 681 + 135191526 c-aggcctgacttcc-cacat-atcagcaattgatgaagctgagtgacagctgcccttttagaca-gggtttctgcctctatttcacaagaggct--a--c---------------cataccaagcccacttc-tgcatttccactacctgactggcctttgtaggcactgaagtttcaagccctgTTCCATGCTGCGTCTTCTTAGGTTATTAACTCACACA-AGA-GGACTGCACACCTGGGTGG-TTTTTCCAGCACA--------AGTGAAG-GCTGTGCTG---ACATCTGATTC--CCCCATGGTCACAGGCAGAAGGTGGTTGACTGAGCTCACAGTTAAAGTTGCTGGTAGAGGAGAAAGCAAAACTAAAGGGGTTGAAGTCATTGG----CCCATGTTCTTTCT-AA--CCATTGGAACATACCTGCACATGCTGAGA----------------------TCGGGGT----TCTCACCTCTG-------------------ACTGT--TGC-ATCTTTGTCCAG-GCCTTGAC----GTAGAGT-T---TATATAGGAAGAAGGAAAAGAAC---TCAGAGGGTGTTTGCTCCTGAGGGATGGCAGGGAGGT-AAaaa--acaaaacaaaacaaaac----------------aaaaA------------ACCTGGCCCGCTTT-----CT-----TAGCCGA-TTTTTCCTTTAAT--TGAAGTTCATAATGCTAATT---AGTTCTGTAGTTCTAGCAGAAATGACATAGGCACTTCAGCTGACACTCAAGGAAGAGGGGCATATCCATCAATAAATGGCAACTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57863546 664 - 122973662 a-aggcctgacttcc-cacat-atcagtcattgatgaagctgagtgacagctgccctttcagacaggggtttctgtctcgatttcataagaggctgca--c---------------cataccaagcccacttc-tgcatttccactacctgcctggcctttgtaggcactgaagtttcaagccctgTTCCGTGCTGCGTCTTCTCAGGTTATTAACTCACACA-AGA-GGACTGCACACCTGGGTGGTTTTTTTCAGCACA--------GGTGAAG-GCTGTGCTG---ACATCTGA-TC--CCCCATGGTCACAGGCAGAAGGTGGTTGACTGAGCTCACAGTTAAAGTTGCTGGTAGAGAAGAAAGCAAAACTAAAGGAGTTGAAGTCATTGG----CCCATGTTCTTTCT-AA--CCATTGGAACATACCTGGACATGCTGAGA----------------------TTGGGGT----TCTCACCTCTG-------------------ACTGT--TGC-ATCTTTGTCCAG-GCCTTGAT----GTAGAGT-T---CATATAGGAAGAAGGAAAGGAAC---TCAGAGGGTGTTTGCTCTTCAGGGATGGCAGGGAGGTAA---------------------------------------AAAAA------------ACCTGGCCTGCTTT-----CT-----TAGCTGA-TTTTTCCTTTAAT--CGAAGTTCATAACGCTAATT---AGTTCTGTAGTTCTAGCAGAAATGACATAGGCACTTCAGCTGACACTCAAGGAAGAGGGGCATATCCACCAATAAAAGTCAACTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79797128 676 + 112192347 c-aggtctgacttcc-cacat-aacagcaactgatgcagctgagtgacagctgcccttttagacaggggtttctgtctctatttcacaagaggccgca--c---------------catacccaacccacttc-tgcgtttccactacctgcctggcttttgtaggcactgaagtttcaagccctgTTCTGTGCTGCGTCTTCTCAGGTTATTAACTCACACA-AGA-GGACTGCACACCTGGGTGG-TTTTTCCAGCACA--------GGTGAAG-GCTGTGCTG---ACGTCTGA-TC--CCCCATGGTTACAGGCAGAAGGTGGTCGACTGAGCTCACAGTTAAAGTTGGTGGTAGAGAAGAAAGCAAAGCTAAAGGGGTTGAAGTCATTGG----TCCATGTTCTTTCT-AA--CCATTGGAACATACCTGGACATGCTGAGA----------------------TCAGGGT----TCTCACCTCTG-------------------ACTGT--TGC-ATCTTTGTCCAG-CCCTTGAT----GTAGAGT-T---CATATAGGAAGAAGGAAAGGAAC---TCAGAGGGTGTTTGCTCCTGAGTGATGGCAGGGAGGT-AAAAA--AAAAAAAAAA-----------------------AACAA------------CCCTGGCCTGCTTT-----CT-----TAGATGA-TGTTTCCTTTAAT--TGAAGTTCATAATGCTAATT---AGTTCTGTAGTTCTAAGAGAAATGACATAGGCACTTCAGCTGACACTCAAGGAAGAGAGGCATATCCACCAATAAAAGGCAACTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80877129 677 + 112612857 c-aggtctgacttcc-cacat-aacagcaactgatgcagctgagtgacagctgcccttttagacaggggtttctgtctctatttcacaagaggccgca--c---------------catacccaacccacttc-tgcgtttccactacctgcctggcttttgtaggcactgaagtttcaagccctgTTCTGTGCTGCGTCTTCTCAGgttattaactcacaca-aga-ggactgcacacctgggtgg-tttttccagcaca--------ggtgaag-gctgtgctg---acgtctga-tc--ccccatggttacaggcagaaggtggtcgactgagctcacagttaaagttggtggtagagaagaaagcaaagctaaAGGGGTTGAAGTCATTGG----TCCATGTTCTTTCT-AA--CCATTGGAACATACCTGGACATGCTGAGA----------------------TCAGGGT----TCTCACCTCTG-------------------ACTGT--TGC-ATCTTTGTCCAG-CCCTTGAT----GTAGAGT-T---CATATAGGAAGAAGGAAAGGAAC---TCAGAGGGTGTTTGCTCCTGAGTGATGGCAGGGAGGTaaaaaa--aaaaaaaaaa-----------------------aacaa------------CCCTGGCCTGCTTT-----CT-----TAGATGA-TTTTTCCTTTAAT--TGAAGTTCATAATGCTAATT---AGTTCTGTAGTTCTAAGAGAAATGACATAGGCACTTCAGCTGACACTCAAGGAAGAGAGGCATATCCACCAATAAAAGGCAACTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76926160 694 + 107442819 CAAGGTCTGGCTTCCACACATAAACAGCAATTGATGCACCTGAGTGACAGCTGCCCTTTTAGACAAGGGTTTCTGTCTCTATTTCACAAGAGGCCGCA--C---------------CATACCCAACCCACTTC-TGCATTTCCACTACCTGCCTGGCTTTTGTAGGCACTGAAGTTTCAAGCCCTGTTCTGTGCTGCGTCTTCTCAGGTTATTAACTCACACA-AGA-GGACTGCACACCTGGGTGG-TTTTTCCAGCACA--------GGTGAAG-GCTGTGCTG---ACGTCTGA-TC--CCCCATGGTTACAGGCAGAAGGTGGTCGACTAAGCTCACAGTTAAAGTTGGTGGTAGAGAAGAAAGCAAAGCTAAAGGGGTTGAAGTCATTGG----TCCATGTTCTTTCT-AA--CCATTGGAACATACCTGGACATGCTGAGA----------------------TCAGGGT----TCTCACCTCTG-------------------ACTGT--TGC-ATCTTTGTCCAG-CCCTTGAT----GTAGAGT-T---CAtataggaagaaggaaaggaac---tCAGAGGGTGTTTGCCCCTGAGTGATGGCAGggaggtaaaaaaacaaaaaacaaa-----------------------aacaaacaaaaaaaaacccctggCCTGCTTT-----CT-----TAGATGA-TTTTTCCTTTAAT--TGAAGTTCATAATGCTAATT---AGTTCTGTAGTTCTAAGAGAAATGACATAGGCACTTCAGCTGACACTCAAGGAAGAGAGGCATATCCACCAATACAAGGCAACTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81191052 672 + 108555830 c-aggtctgacttcc-cacat-aacagcaattgatgcagctgagtggcagctg-ccttttagacaggggtttctgtctctatttcacaagaggccgca--c---------------catacccagcccacttc-tgcatttccactacctgcctggcttttgtaggcactgaagtttcaagccctgTTCTGTGCTGCGTCTTCTCAGGTTATTAACTCACACA-AGA-GGACTGCACACCTGGGTGG-TTTTTCCAGCACA--------GGTGAAG-GCTGTGCTG---ACATCTGA-TC--CCCCATGGTTACAGGCAGAAGGTGGTCAACTAAGCTCACAGTTAAAGTTGGTGGTAGAGAAGAAAGCAAAGCTAAAGGGGTTGAAGTCATTGG----TCCATGTTCTTTCT-AA--CCATTGGAACATACCTGGACATGCTGAGA----------------------TCAGGGT----TCTCACCTCTG-------------------ACTGT--TGC-ATCTTTGTCCAG-CCCTTGAT----GTAGAGT-T---CATATAGGAAGAAGGAAAGGAAC---TCAGAGGGTGTTTGCTCCTGAGTGATGGCAGGGAGGT----AA--AAAAAACAAC-----------------------AACAA------------CCCTGGCCTGCTTT-----CT-----TAGATGA-TTTTTCCTTTAAT--TGAAGTTCATAATGCTAATT---AGTTCTGTAGTTCTAACAGAAATGACATAGGCACTTCAGCTGACACTCAAGGAAGAGAGGCATATCCACCAATAAAAGGCAACTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111424615 673 - 210400635 c-aggcttgacttcc-cacac-atcagcaattgatggagctga--gacagctgaccctttaaacaagggtttctatctccatttcacaagaggctgca--c---------------cataccaagccctattc-tgcatttccaccacctgcctggccttcgtagctactaaagtttcaagccctgTTCTGTGCTGCGTCTTCTCAGGTTATTAACTCACACAGAGA-AGACTGCACACCTGGGTGGTTTTTTCCAGCACA--------AGTGAAA-GCTATGCTG---ACATGTGA-TC--CCCCATGCTCACAGGCAGAAGGTGGTCTATTTCACTCACAGTTAAAGTTGATAGCAGAGAAGAAAGCAAAACTCAAGGGGTGTGAGTCATTGG----CCCAGGTTCTTTCTAAA--CCATTAAAATATACGTGGACATACTGAGA----------------------TTGGGGT----TCTTATCTCTA-------------------ACTGT--TCCAATCTATTTTCAG-GCTTTCATGTGGGTAGGGT-T---CATGTAGGAAGAAGGAAAGGAAC---TCAGAAGGCCTTAGCTCCTGAGGGATGGCAGGGGGGT--------A--------------------------------ACAAA------------ACCTGGCCTGCTTCCTTTACT-----TAGCTGA-TTTTTCCTTTAAT--TGAAGTCCATAATGCTAATT---AGTTCTGTAGTTCTAGCAGAAATGACATAGGCACTTCAGCTGACACTCAAGGAAGAGGGGCATATCCACCAGTAAAATGCAACTT i calJac3.chr1 C 0 C 0 s mm10.chr19 38071253 574 - 61431566 c-ag----------c-agcct----------------------------------cctttagata-ggtttgccctttcca-ctctcaagagtctgcatcc---------------cagacttcatgcaactt-catgtattta-tgccttcctggacctggcatgcatttaagtttgAAGCCATGACCCACAATGTGCCCT----AGCTGTCAACTCACACA-GCATAGACGGCACACCTGGATTG-TTTTCCTA--ACA--------ACTTGAG-CCTGTGCTTATCACACCTGG-TG--CCTTGTTGTCTCAGA----------------AAGTTCAAAGTT--AGTGGGTGGGAGACAAGAAAGTATAACTT------------TTGCTGT----CCCATGGTCTTTGT-GAATCCACTGGAACATGGCTGGAAAGGCC-AGA----------------------TCACAGT----GCTCATCTCTG-------------------ACTACTGTGC-CTCTTTGCCCTA-GCTCTCAT----CCAGAATGC---CATATGGGACAAGGGGCACAGACAGGTTAGAGACTAGCTTTCTGTAGATAATG---------------------------------------------------GAAGA------------ACCTAATTTGTTTT-----CT-----TCACTGACTTTTTCCTGTAGG--TGAAGGTTATGGTGCCAATC---AATTCTGGAA-TCTGTCAGGAATGGCTTAG--------ACTGGTACTCAGGGAATAGGGGATAGGGCGCCCAGTAAATACAAATT i mm10.chr19 C 0 C 0 s canFam3.chr1 35312123 714 - 122678785 c-aggcccaaactcc-cacac-attagcaactgaggaagctgagaagcaggcgcccctatagactgaggttgggttccccatttcagggcagtctgca--cccgatcctgctgtatcacaccaagctcatgtcatgtgtttatgtcacctgcctgacAT------------GAGTTTCAGACCCTG-CCAACGTTTCATCCTCTCG---TGTTAATTCACCAG-AGT-AGGCTGCACACTTGGGTGG-TTTCCCCACTGCATCCCCCACTGTGCAGCGCTGTGTGC---ACTGCTCC-CCATCCCCAGGGGCACCAGCAGAAGGTAGCAGATGGACCTCAGAGTAGAAGCCGGTGGCAGAGAAGGGAGAAAAATGA---GAGTTGAACTCATGAAAAACCTCATGTTCCTTCT-AA--CCATCTGGATGTGCCTGGACATGCTGAAATGCTGACATCCATACATAGCATTTGGGGCCTGATTTTGCCTTTGCAGACAAGTAATAGTCTTTGATCT--TAC-ATCCTTGTCCAGAGCCCTCAC----AGAGGAT-TTCATGTGTGAGAAAAGGGAAAGAATC---CCACAGTGC-CTTACTTCCATGTGAAG---GGCAGTT-----------------------------------------GGAAA------------GCCGGGCCTGCTTT-----CCCCAAGTAGTTCG-TTGTTTCTGTAATGACGTGGGTTATTA-GCAAATTGTCGATTCTGTGGTTCTGTCGGAGA-GAGATAC------------ACACTCAAGTAAGGGGGAAAAATCCACCAATAAAATACAACAC i canFam3.chr1 I 2 I 501 a score=1539533.000000 s hg38.chr9_GL383541v1_alt 106844 491 + 171286 TAGAGACTCtgtcttggttcatt-----caggctgctataacaaaataccataaactaggtaatttataaacaacagaaatgtatttcttacagtcctgaagtctgggaagtcctagatcaaagtattggcagatctggcgtctgctgagggcctgtttcctggt--ccatatggcacctactcattgtgtccgcaaattccagaaggggcaaatgagctcccttggac-ctcacttataagggtaccaatcccattccaaaacctaatcacctcccaaaaagccccaccttctattaccattccctt--aggggttcatatgtcaacgtatgacttttgagaatttgtgagtgtcccacagacactcagatcatagcaGTTTCATTCTCCCAAAAAGAGACTGTAGGTTGAGGAGGGTGCTGCCCAA--ACTCATATTTGGAAATCTGATTCCATGAGTCCTTGTAACTTGGCTTCATCTGG-TTTGATTGACATGTCATTTT s panTro4.chr9 68672269 491 + 137840987 TAGAGACTCtgtcttggtccatt-----caggctgctataacaaaataccataaactaggtaatttataaacaacagaaatgtatttcttacagtcctgaagtctgggaagtcctagatcaaagtattggcagatctggcgtccgctgagggcctgtttcctggt--ccatatagcacctactcattgtgtccgcaaattccagaaggggcaaatgagctcccttggac-ctcacttataagggtaccaatcccattccaaaacctaatcacctcccaaaaagtcccaccttctattaccattccctt--aggggttcatatgtcaacgtatgacttttgagaatttgtgagtgtcccacagacactcagatcatagcaGTTTCATTCTCCCAAAAAGAGACTGTAGGTTGAGGAGGGTGCTGCCCAA--ACTCATATTTGGAAATCTGATTCCATGAGTCCTTGTAACTTGGTTTCATCTGG-TTTGATTGACATGTCATTTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64828182 491 + 135191526 TAGAGACTCtgtcttggtccatt-----caggctgctataacaaaataccataaactaggtaatttataaacaacagaaatgtatttcttacagtcctgaagtctgggaagtcctagatcaaagtgttggcagatctggcgtctggtgagggcctgtttcctggt--ccatatggcacctactcattgtgtcctcaaattccagaaggggcaaatgagctcccttgggc-ctcacttataagggcaccaatcccattccaaaacctaatcacctcccaaaaagccccaccttctattaccattccctt--aggggttcatatgtcaacgtatgactttggagaatttgtgagtgtcccacagacactcagatcatagcaGTTTCATTCTCCCAAAAAGAGACTGTAGGTTGAGGAGGGTGCTGCCCAA--ACTCATATTTGGAAATCTGATTCCATGAGTCCTTGTAACTTGGCTTCATCTGG-TTTGATTGACATGTCATTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57864210 490 - 122973662 TAGAGA--Ctgtcttggtccatt-----caggctgctataacaaaataccataaactaggtaatttataaacaacagaaatgtatttcttacagttctgaagtctgggaagtcctagatcaaagtgttggcagatctggcgtctggtcagggcctgtttcctggt--ccatatggcacctactcattgtgccttcaaattccagaaggggcaaatgagctcccttgggc-ctcacttataagggcaccaatcccattccaaaacctaatcacctcccaaaaagccccaccttctattaccattgcctt--aggggttcatatgtaaatgtatgacttttgagaatttgtgagtgtcccacggacactcagatcatagcTGTTTCATTCTCCCAAAAAGAGACTGTAGGTTGAGGAGGGTGCTGCCCAA--ACTCATATTTGGAAATCTGATTCCATGAGTCCTTGTAACTTGGCTTCATCTGGTTTTGATTGACATGTCATTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79797804 473 + 112192347 TAAAGACTCtgtcttggtccatt-----caggctgctataacataataccataacctaggtaatttataaacaacagaaatgtatttcttacagttctgaagtctgagaagttccagatcaaagtgttggcagatctggcgtctggtgagggcctgtttcctggt--ccatatggcaccaactccttgtgccctcaaattccagaaggggca--------------------cactaataagggcaccaatcccattccaaaacctaatcacctccccaaaagccacatcttctattaccattccctt-ggggggttcatatttcaatgtatgacttttgagaattcgtgagtgtcccacagacactcagatcatagcaGTTTCATTCTCCCAAAAAGAGACTGTAGGTTGAGGAGGGTGCTGCCCAA--ACTCATATTTGGAAATCTGATTCCATGAGTCCTTGTCACTTGGCTTCATCTGG-TTTGATTGACATGTCATTTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80877806 473 + 112612857 TAAAGACTCtgtcttggtccatt-----caggctgctataacataataccataacctaggtaatttataaacaacagaaatgtatttcttacagttctgaagtctgagaagttccagatcaaagtgttggcagatctggcgtctggtgagggcctgtttcctggt--ccatacggcaccaactccttgtgccctcaaattccagaaggggca--------------------cactaataagggcaccaatcccattccaaaacctaatcacctccccaaaagccacatcttctattaccattccctt-ggggggttcatatttcaatgtatgacttttgagaattcgtgagtgtcccacagacactcagatcatagcaGTTTCATTCCCCCAAAAAGAGACTGTAGGTTGAGGAGGGTGCTGCCCAA--ACTCATATTTGGAAATCTGATTCCATGAGTCCTTGTCACTTGGCTTCATCTGG-TTTGATTGACATGTCATTTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76926854 474 + 107442819 TAAAGACTCTGTCTtggtccatt-----caggctgctataacataATACCATAacctaggtaatttataaacaacagaaatgtatttcttacagttctgaagtcTGAGAAGTTCcagatcaaagtgttggcagatctggcatctggtgagggcctgtttcctGGT--CCATATGGCACCAACTCCTTGTGCCCTCAAATTCCAGAAGGGGCA--------------------CACTAataagggcaccaatcccattccaaaacctaatcacctcccaaaaagCCACATCTTCTATTACCATTCCCTTgggggggTTCATATTTCAATGTATGACTTTTGAGAATTCGTGAGTGTCCCGCAGACACTCAGATCATAGCAGTTTCATTCTCCCAAAAAGAGACTGTAGGTTGAGGAGGGTGCTGCCCAA--ACTCATATTTGGAAATCTGATTCCATGAGTCCTTGTCACTTGGCTTCATCTGG-TTTGATTGACATGTCATTTG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81191724 472 + 108555830 TAAAGACTCtgtcttggtccatt-----caggctgctataacataataccataacctaggtaatttataaacaacagaaatgtatttcttacagttctgaagtctgagaagttccagatcaaagtgtt-ccagatctggcgtctggtgagggcctgtttcctggt--ccatatggcacctactcattgtgccctcaaattccagaaggggca--------------------cactaataagggcaccaatcccattccaaaacctaatcacctcccaaaaagccacatcttctattaccattccctt-ggggggttcatatttcaatgtatgacttttgagaattcgtgagtgtcccacagacactcagatcatagcaGTTTCATTCTCCCAAAAAGAGACTGTAGGTTGAGGAGGGTGCTGCCCAA--ACTCATATTTGGAAATCTGATTCCATGACTCCTTGTAACTTGGCTTCATTTGG-TTTGATTGACATGTCATTTG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111425288 490 - 210400635 TAGAGACTCCgtcttggtccatt-----caggctgctataactaaatgccatagacta-gtcatttataaacaacagcaatgtatttcttacagttctgaagtctgagaaatcccagatcaaagtgttggcagatctggcatctggtgagggcctgtttcctggt--ccacgtggcacctgctcattgagtcctcatattccagaaggggcaaatgagctcccttgggc-ctcacttacaagggcaccaatcccattccaaaacctaatcacctcccaaaaagccccaccttctattaccattccctt--agggattcatatttcaacgtatgacttttgaggatgtgtgagtgtcccacagacactcagatcatagtaGTTTCATTCTCCCAAAAAGAGACTGTGGCTTGAGGTGGGTGCTGCCCAC--CCTCATAATTGGAAATCTGATTCCATGAGTCCTTGTAACTTGGCTTCATCTGG-TTTGATTGACGTGTCATTTT i calJac3.chr1 C 0 C 0 s mm10.chr19 38071827 436 - 61431566 TCAAG----tgtcttggtccattatggctgggttgctacagcaaaataccacaagctcaatgacttacaaacatcagaaattcatgtcttacagt-ctggaaactgt---------gatcaacatgctagcagatatatcgt--gacaagggtccttttcccagtgaacacatggcatcctc-cattgtgtctccacatagaagaagg----------ctccttgggactctcatcactaagctcatgaa---------------tgagggcttccccAGAGGACTTGCCTTCTACTATCATCGAATT--GAGAGTT-AGACCTCAGGAGACAACGTTT-----------------CAAGAGGCA-----AACATAGCGATTTCATTTTCCTTGAAAGAGGCTGTAGGTTGAGTGGGGTACTGACCAAACACTTACATGTTGGAAAAGACTTGCATGAGTCCTTGTCACTTGGCCTTAGTTGG-CTTGATCAATGTGCCATTTT i mm10.chr19 C 0 C 0 e canFam3.chr1 35312837 501 - 122678785 I a score=1655938.000000 s hg38.chr9_GL383541v1_alt 107335 445 + 171286 AAATCAT---TAAGAGCACTTAAGCCAAACCGAAAATATGTGAACATGTGACAGCATGCCATTTTCCTCTGCAGGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAGGGAGGTTATGTTGCCCTGGATGATATTTCATTCTCTCCTGTTCACTGCCAGAATCAGACAGGTGAGCATTCTCTATTTGTCATTG--CA-TTTTGGGATGTTCCTGTTTCAATAGATGTTTGTGGTCAGAACTTG-TTTTAATTGCTTTTAATTTTCATATCTTTCCCCTTCTGTCATCC-TTAAAAAATTATTTAATC-AAAGGTCATTTTT------------------------CTGGAATATTACTCTCTTTTCCTCCCTCACAGAGGGAATCTAATGTTTCTGACACCATCAGCCAGTTGTCCTATCTTAGGAAGGTTTCATCTTTCCTTTCCA---GGAAAAGAAAATTAAAT------------------------------------------AATACTAACTTATTC s panTro4.chr9 68672760 445 + 137840987 AAATCAT---TAAGAGCACTTAAGCCAAACCGAAAATATGTGAACATGTGACAGCATGCCATTTTCCTCTGCAGGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAGGGAGGTTATGTTGCCCTGGATGATATTTCATTCTCTCCTGTTCACTGCCAGAATCAGACAGGTGAGCATTCTCTATTTGTCATTG--CA-TTTTGGGATGTTCCTGTTTCAACAGATGTTTGTGGTCAGAACTTG-TTTTAATTGCTTTTAATTTTCATATCTTTCCCCTTCTCTCATCC-TTAAAAAATTATTTAATC-AAACGTCATTTTT------------------------CTGGAATATTACTCTCTTTTCCTCCCTCACAGAGGGAATCTAATGTTTCTGACACCATCAGCCAGTTGTCCTCTCTTAGGAAGGTTTCATCTTTCCTTTCCA---GTAAAAGAAAATTAAAC------------------------------------------AATACTAACTTATTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64828673 445 + 135191526 AAATCAT---TAAGAGCACTTAAGCCAAACTGAAAATATGTGAACATGTGACAGCATGCCATTTTCCTCTGCAGGTTATTTTCGAAGTTGCTTTCAATGGTCCCAAGGGAGGTTATGTTGCCCTGGATGATATTTCGTTCTCTCCTGTTCACTGCCAGAATCAGACAGGTGAGCATTCTCTATTTGTCATTG--CA-TTTTGGGATGTTCCTGTTTCAATAGATGTTTGTGGTCAGAACTTG-TTTTAATTGCTTTTAATTTTCATATCTTTCCCCTTTTCTCATCC-TTAAAAAATTATTTAATC-AAAGGTCATTTTT------------------------CTGGAATATTACTCTCTTTTCCTCCCTCACAGAGGGAATCTAATGTTTCTGACACCATCAGCCAGTTGTCCTATCTTAGGAAGGTTTCATCTTTCCTTCCCA---GGAAAAGAAAATTAAAT------------------------------------------AATACTAACTTATTC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57864700 440 - 122973662 AAATCAT---TAAGAGCACTTAAGCCGAACCGAAAATATGTGAACATGTGACAGCATGCCATTTTCCTCTGCAGGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGAGGTTATGTTGCCCTGGATGATATTTCGTTCTCTCCTGTTCACTGCCAGAATCAGACAGGTGAGCATTCTCTATTTGTCATTG--CA-TTTTGGGATGTTCCTGTTTCAATAGATGTTTGTGGTCAGAACTTG-TTTTAATTGTTTTTAATTTTCATATCTT-----TTCTCTCATCC-TTAAAAAATTATTTAATC-AAAGGTCATTTTT------------------------CTGGAATATTACTCTCTTTTCCCCCCTCACAGAGGGACTCTAATGTTTCTGACACCATCAGCCAGTTGTCCTATCTTAGGAACGTTTCATCTTTCCTTCCCA---GGAAAAGAAAATTAAAT------------------------------------------AATACTAACTTATTC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79798277 442 + 112192347 AAATCAT---TAAGAGCACTTAAGCCAAACTGAAAATATGTGAACATGTGACAGCATGCCATTTTCCTCTGCAGGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGAGGCTATGTTGCCCTGGATGATATTTCGTTCTCTCCTGTTCACTGCCAGAATCAGACAGGTGAGCATTCTCTATCTGTCATTG--CA-TTTTGGGATGTTCCTGTTTCAAAAGATGTTTGTGGTTAGAACTTG-TTTTAATTGCTTTTAATTTTCGTATCTTTCCCCTTCTCTCATCC-TTAAAAAATGATTT-----AAAGGTCATTTTTTT----------------------CTGGAATATTACTCTTTTTTCCCCCCTCACAGAGGGAATCTAATGTTTCTGACACCATCAGCCAGTTGTCCTATCTTAGGAAGCTTTTATCTTTCCTTCCCA---GGAAAAGAAAATTAAAT------------------------------------------AATACTAACTTATT- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80878279 442 + 112612857 AAATCAT---TAAGAGCACTTAAGCCAAACTGAAAATATGTGAACATGTGACAGCATGCCATTTTCCTCTGCAGGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGAGGCTATGTTGCCCTGGATGATATTTCGTTCTCTCCTGTTCACTGCCAGAATCAGACAGGTGAGCATTCTCTATCTGTCATTG--CA-TTTTGGGATGTTCCTGTTTCAAAAGATGTTTGTGGTTAGAACTTG-TTTTAATTGCTTTTAATTTTCATATCTTTCCCCTTCTCTCATCC-TTAAAAAATGATTT-----AAAGGTCATTTTTTT----------------------CTGGAATATTACTCTTTTTTCCCCCCTCACAGAGGGAATCTAATGTTTCTGACACCATCAGCCAGTTGTCCTATCTTAGGAAGCTTTTATCTTTCCTTCCCA---GGAAAAGAAAATTAAAT------------------------------------------AATACTAACTTATT- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76927328 442 + 107442819 AAATCAT---TAAGAGCACTTAAGCCAAACTGAAAATATGTGAACATGTGACAGCATGCCATTTTCCTCTGCAGGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGAGGCTATGTTGCCCTGGATGATATTTCGTTCTCTCCTGTTCACTGCCAGAATCAGACAGGTGAGCATTCTCTATCTGTCATTG--CA-TTTTGGGATGTTCCTGTTTCAATAGATGTTTGTGGTTAGAACttg-ttttaattgcttttaattttcatatcttcccccttctctcatcc-ttaaaaaatgattt-----aaaggtcattttttt----------------------ctggaatattactcttttttcccccctcacaGAGGGAATCTAATGTTTCTGACACCATCAGCCAGTTGTCCTATCTTAGGAAGCTTTTATCTTTCCTtccca---ggaaaagaaaattaaat------------------------------------------aatactaaCTTATT- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81192196 442 + 108555830 AAATCAT---TAAGAGCACTTAAGCCAAACTGAAAATATGTGAACATGTGACAGCATGCCATTTTCCTCTGCAGGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGAGGCTATGTTGCCCTGGATGATATTTCGTTCTCTCCTGTTCACTGCCAGAATCAGACAGGTGAGCATTCTCTGTCTGTCATTG--CA-TTTTGGGAT-TTCCTGTTTCAATAGATGTTTGTGGTTAGAACTTG-TTTTAATTGCTTTTAATTTTCATATCTTACCCCTTCTCTCATCC-TTAAAAAATGATTT-----ACAGGTCATTTTTTT---------------------CCTGGAATATTACTCTTCTTTCCCCCCTCACAGAGGGAATCTAATGTTACTGACACCATCAGCCAGTGGCCCTATCTTAGGAAGCTTTTATCTTTCTTTCCCA---GGAAAAGAAAATTAAAT------------------------------------------AATACTAACTTATT- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111425778 444 - 210400635 AATTCAT---TAAGAGCACTTAAGCCGAACAGAAAATATGTGGACATGTGACAGCATGCCATTTTCCTCTGTAGGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGAGGTTATGTTGCCCTGGATGATATTTCCTTCTCTCCTGTTACCTGCCAGAATCAGACACGTGAGCATTCTCTATTCATCATTA--CATTTTTGGGTTGTTCCCGTTTCAATAGATGTTTGTGGTCAGAACTTA-TTTTAATTGCTTTTAATTTTCATTTCTTTCCCCTTGTCTCATCC-TTAAAAAACTATTTGATCTAAGAGTCATTTTT------------------------CTGGAATATTACTCTTTTT--CCCCCTGACAGAGGGAATCTAATGTTTCTGAGGCCATCAGCCAGTTGTCCTATCTCAGGAAGCTTTCATCTTTCCTTCCCA---GGAAAAGAAAATGAAAT------------------------------------------AATACTAACTTATT- i calJac3.chr1 C 0 C 0 s mm10.chr19 38072263 448 - 61431566 TAATCATG--TAAGAGCA------------AGAAAGTATGTAAATATATGCTAACCTGTCACTTTTCTTCCCAGGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGAGGCTACGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAGGTGAGACCTGCTTACTCTTCCTCG--CT----TGGAAGGTGCCTGCCTCGCCAGATGCCCAGAGTTGGCACTTGTTTTTAACTGTCTTTAATTTCCTCATCTTTTCTCTTACCTTGTCT-TTAAAAGATCATCAACGG-AATAATCTTtttgtttgtttgtttgtttgtttgtttTCTGAACTGTTCCCCTCTTT-CATCCCTCATATAGTGGATTTAATCTCATTGATACTATACACAAGCTTGCAT------GAGACGCTTAGTCTTTTATTTCTATTCACACAGCAAAACTTA--------------------------------------------AATATTAATTTAC-- i mm10.chr19 C 0 C 0 s canFam3.chr1 35313338 484 - 122678785 AAATCATGGTTGAGAGCTCTGAAGCCTAACAGAAAATCTGTAAACCTGTAGCAATACATCATCTTCCTCTGCAGGTTATTTTTGAAGTTGCTTTCAATGGTCCTAAAGGAGGATATGTGGCTCTCGATGACATTTCTTTCTCTCCTGTTCACTGCCAGAATCAGACAGGTAAGCATTCTCTTTTTCTTTTGGCTCA-CACAGGGAGTTTTCTTT----GTAGATGCCTGTGGTTGGGACTTA----------ATTCTAATTTTCTCACCTCTCCTGTTATCTCCTCCTTTAAAAAATTATTTAATCAAGTAGTCATTTTT------------------------CTGCTACATTACTCTTTTTTTTCCCCTAACAGAGTGAATTTAATTTTTTTGACACCACAGGCCAGTTGTCATGTGTTAAGGAGCTTTCACCGTCCCTATCTACTAGGTAATGAAAATTAAATACAAACACATTCCCTCCTCATCTTTCTCtttttttaaaaaagaagatttatttattc i canFam3.chr1 I 501 I 130 a score=1357924.000000 s hg38.chr9_GL383541v1_alt 107780 383 + 171286 TCAC------------------ACACTCA-------------------CTCCATCTTTCTCTTTA---GAGGATATCTT----GGGCCCATAAATGGGTGGCTGGGTAGATGG----------ACAAAGCTCTCACAATCTACTGAATAGAATAATATATTTTAAAAACGC---TTTCCAACTGTATGTATCCAAAATTTATAAATGGCCTCATGTTTAAAGACGTTAGTATTTGGTAGAC---ATCTCTA-G-ATAGTTTTAGCTAAATAGCATGTGCTCTTAATTAAATTACTTTCCACTTCCAGGATGAACCCTCAAATTATTTTATCATGATCAGTTTTGAGATTT-CATAAATTTGATGTTT-AAAATGAGAGGATTATTTTTACTCTCTGGAAAAATAGGTAAGCAAATTGATTCAAAGTGAATTAGAAAGCAAATGTTTT s panTro4.chr9 68673205 383 + 137840987 TCAC------------------ACACTCA-------------------CTCCATCTTTCTCTTTA---GAGGATATCTT----GGGCCCATAAATGGGTGGCTGGGTAGATGG----------ACAAAGCTCTCACAATCTACTGAATAGAATAATATATTTTAAAAACCC---TTTCCAACTGTATGTATCCAAAATTTATAAATGGTCTCATGTTTAAAGACGTTAGTATTTGGTAGAC---ATCTCTA-G-ATAGTTTTAGCTAAATAGCATGTGCTCTTAATTAAATTACTTTCCACTTCCAGGATGAACCCTCAAATTATTTTATCATGATCAGTTTTGAGATTT-CATAAATTTGATGTTT-AAAATGAGAGGATTATTTTTACTCTCTGGAAAAATAGGTAAGCAAATTGATTCAAAGTGAATTAGAAAGCAAATTTTTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64829118 383 + 135191526 TCAC------------------TCCCTCA-------------------CTCCATCTTTCTCTTTA---GAGGATATCTT----GGGCCCATAAATGGATGGCTGGGTAGATGG----------ACAAAGCTCTCACAATCTACTGAATAGAATGATATATTTTTAAAACCC---TTTCCAACTGTATGTATCCAAAATTTATAAATGGCCTCATGTTTAAAGATGTTAGTATTTGGTAGAC---ATCTCTA-G-ATAGTTTTAGCTAAATAGCATGTGCTCTTAATTGAATTACTTTCCACTTCCAAGATGAACCTTCAAATTATTTTATCATGATCAGTTTTGTGATTT-CATAAATTTAATGTTT-AAAATGAGAGGATTATTTTTACTCTCTGGAAAAATAGGTAAGCAAATTGATTCAAAGTGAATTAGAAAGCAAATGTTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57865140 383 - 122973662 TCAC------------------TCCCTCA-------------------CTCCATCTTTCTCTTTA---GAGGATATCTT----GGGCCCATAAATGGGTGGCTGGGTAGATGG----------ACAAAGCTCTTACAATCTACTGAATAGAATAATATAGTTTAAAAACTC---TTTCCAACTGTATGTATCCAAAATTTATAAATGGCCTCATGTTTAAAGATGTTAGTATTTGGTAGAC---ATCTCTA-G-ATAGTTTTAGCTAAATAGCATGTGCTCTTAATTAAATTACTTTCCACTTCCAAGATGAACCCTCAAATTATTTTATCATGATCAGTTTTGTGATTT-CATAAATTTGATGTTT-AAAATGAGAGGATTATTTTTACTCTCTGGAAAAATAGGTAAGCAAATTGATTCAAAGTGAATTAGAAAGCAAATGTTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79798719 376 + 112192347 -------------------------CTCA-------------------CTCCATCTTTCTCTTTA---GAGGATATCTT----GGGACCATAAATGGGTGGCTGGGTAGATGG----------ACAAAGCTCTCACAATCTACTGAATAGAATAATATATTTTAAAAATGC---TTTCCAACAGTATGTATCCAAAATTTATAAATGTCCTTATGTTTAAAGATGTTAGTATTTGGTAGAC---ATCTCTG-G-ACAGTTTTAGCTAAATAGCATGTGCTCTTAATTAAACTACTTTCCACTTCCAAGATGAACCCTCAAATTATTTTATCATGATCAGTTTTGCGATTT-CATAAATTTGATGTTT-AAAATGAGAGAATTATTTTTACTCTCTAGAAAAATAGGTAAGCAAATTGATTCAAAGTGAATTAGAAAGCAAATGTTTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80878721 376 + 112612857 -------------------------CTCA-------------------CTCCATCTTTCTCTTTA---GAGGATATCTT----GGGACCATAAATGGGTGGCTGGGTAGATGG----------ACAAAGCTCTCACAATCTACTGAATAGAATAATATATTTTAAAAATGC---TTTCCAACAGTATGTATCCAAAATTTATAAATGTCCTTATGTTTAAAGATGTTAGTATTTGGTAGAC---ATCTCTG-G-ACAGTTTTAGCTAAATAGCATGTGCTCTTAATTAAACTACTTTCCACTTCCAAGATGAACCCTCAAATTATTTTATCATGATCAGTTTTGCGATTT-CATAAATTTGATGTTT-AAAATGAGAGAATTATTTTTACTCTCTAGAAAAATAGGTAAGCAAATTGATTCAAAGTGAATTAGAAAGCAAATGTTTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76927770 376 + 107442819 -------------------------CTCA-------------------CTCCATCTTTCTCTTTA---GAGGATATCTT----GGGACCATAAATGGGTGGCTGGGTAGATGG----------ACAAAGCTCTCACAATCTACTgaatagaataatatattttaaaaatgc---tttccaaCAGTATGTatccaaaatttataaatgtCCTTATGTTTAAAGATGTTAGTATTTGGTAGAC---ATCTCTG-G-ACAGTTTTAGCTAAATAGCATGTGCTCTTAATTAAACTACTTTCCACTTCCAAGATGAACcctcaaattattttatcatgaTCAGTTTTGCAATtt-cataaatttgatgttt-aaaatgagagaattatttttactttctagaAAAATAGGTAAGCAAATTGATTCAAAGTGAATTAGAAagcaaatgtttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81192638 376 + 108555830 -------------------------CTCA-------------------CTCCATCTTTCTCTTTA---GAGGATCTCTT----GGGCCCATAAATGGGTGGCTGGGTAGATGG----------ACAAAGCTCTCACAATCTACTGAATAGAATAATATATTTTAAAAATGC---TTTCCAACAGTATGTATCCAAAATTTATAAATGTCCTTATGTTTAAAGATGTTAGTATTTGGTAGAC---ATCTCTA-G-ACAGTTTTAGCTAAATAGCATGTGCTCTTAATTAAACTACTTTCCACTTCCAAGAAGAACCCTTAAATTATTTTATCATGATCAGTTTTGCGATTT-CATAAATTTGATGTTT-AAAATGAGAGAAATATTTTTACTCTCTAGAAAAATAGGTAAGCAAATTGATTCAAAGTGAATTAGAAAGCAAATGTTTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111426222 374 - 210400635 -------------------------CTCA-------------------CTCCATCTTTCTTTTTA---GAGGATATCTT----GGGTTCATTTATGAGTGGCTGGGTAGATGG----------ACACAGCTCTCACAATCTACCAAATAGAATAATATATTTTAATAACTC---TTTCCAACTGTATGTATCCAAAATTTATAAATGTCCTCACATTTAAAGATGTTAATATTTGGTAGAC---ATCTCTA-G-ATGGTTTTAGCCAGAGAGCACGTGCTCTGAATTG--TTTCTTTCCCCTTCCAAGGTGAACCCTCAAATTATTTTACCATGATCGGTTTTGTGATTT-CATAAATTTGATGTTT-AAAATGAGAGGATTATTTCTATTCTCTGGAAAAATAGATAAGTAAATTGATTCAAAGTGAATTAGAAAACAAATGTTTT i calJac3.chr1 C 0 C 0 s mm10.chr19 38072711 358 - 61431566 -------------------------CTAA-------------------ATTCATGTATTTCTTTAAATAAAGGTATTATTTAAAGTTCCATACATGAATAGCTCAATAGCCTGAAGGGGGAAAAAAAAACTCTTACAACCTTCTGGATAGAATTATA-------AAAACTCTAATTTTCAA------GTCTCCAAGATCCAT-AATGTCTTTATTCTTATATATATTAGTATTCAGTAGAT---ATCACTG-GAATGGTTTTGGCTAAACAGTATGTGCTGTTAATTTAATTAACTTCTTCTTCAAAG-TGAACCCTCATATAACTTTGTCAGGGCCAAAATTAAAATTC-TATAACTTTGTCATTT-AAAAAGAGAGGGAATTCTCAACTTTCTGGGAAAATGGATAAACACACGTGT------------------------TTTT i mm10.chr19 C 0 C 0 s canFam3.chr1 35313952 406 - 122678785 tcacgccctgagccgaaggcagacactcaactgagccacccaggtgtcccTCGTCTTTCTCTTTA---AAGGATATCTT----AGA-TCATGTACAGGTGGCTGAGTGGGTGG---------GAAAAAATTCTCAAACTCT--CAAGTCGGATTATA-------AAAACTC---T----AATTTTATGTACTCAAGACCTATAAATGTCTCCATGTTTAAAGATGTTAATATTTGGTGTACAGTATCTCTATG-ACAGTTTGTGATATTTATAGTATGTACTTAATTTAATTTCTCT----TTCTAAG-TAAATCCTCAAATTCTTTTATCGCAGCCAATTTTGTAATTTCCATAAACTTAGTGTTTGGAAAAGAGAGGAA-ATTTTTACTTTCTGGAAAAA-AGGGAAGCAAATCGATTCAAAATAAATTAGAAAACAAATGTTCT i canFam3.chr1 I 130 I 207 a score=914131.000000 s hg38.chr9_GL383541v1_alt 108163 256 + 171286 ataataagaaggataataatatagtaatgataaCCCAGATAAATAAAATTGACCTTACTGTTTAGTGAATTTGTTTCCTTGAGAGA---CCAAGGGAGACATTATGGTCACCCCGCCTTATTAGTGAGCCCTTATTCTTGGTTATGTAGCATGGAAAGTAATTTATGAACTTGGCGTTTGAGGT----CTTTCACTCAAGATAGAGTTGGTTTGTAATTTAAT---------------------------ATGATTTCAGATACATTCTGCAAATCGGGGGACTAAGAAA s panTro4.chr9 68673588 253 + 137840987 ATAATAAGAAGGATAATA---TAGTAATGATAACCCAGATAAATAAAATTGACCTTACTGTTTAGTGAATTTGTTTCCTTGAGAGA---CCAAGGGAGACATTATGGTCACCCCACCTTATTAGTGAGCCCTTATTCTTGGTTATGTAGCATGGAAAGTAATTTATGAACTTGGCGTTTGAGGT----CTTTCACTCAAGATAGAGTTGGTTTGTAATTTAAT---------------------------ATGATTTCAGATACATTCCGCAAATCAGGGGACTAAGAAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64829501 256 + 135191526 ATAATAAGAAGGATAATAATATATTAATGATAACCCAGATAAATAAAATTGACCTTACTGTTTGGTGAATTTGTTTCCTTGAGAGA---CCAAGGGAGACATTATGGTCACCCCGCCTTATTAGTGAGCCCTTATCCTTGGTTATGTAGCATGGAAAGTAATTTATGAACTTGGCATTTGAGGT----CTTTCACTCAAGATAGAGTTGGTTTGTAATTTAAT---------------------------ATGATTTCAGATACATTCTGCAAATCAGGGGACTAAGAAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57865523 253 - 122973662 ataat---aaggataataatatattaatgataaCCCAGATAAATAAAATTGACCTTACTGTTTAGTGAATTTGTTTCCTTGAGAGG---CCAAGGGAGACATTATGGTCACCCTGCCTTATTAGTGAGCCCTTATTCTTGGTTATGTAGCATGGAAAGTAATTTATGAACTTGGCGTTTGAGGT----CTTTCACTTAAGAGAGAGTTGGTTCATAATTTAAT---------------------------ATGATTTCAGATACATTCTGCAAGTCAGGGGACTAAGAAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79799095 251 + 112192347 ATAATAAGAAGGATAATAA-----TAATGATAACCCAGATATATAAAATTGACCTTACCGTTTAGTGAATTTGTTTCCTTGAGAGA---CCAAGGGAGACATTATGGTCACCCCGCCTTATTAATGAGCCCTTATTCTTGGTTATGTAGCACGGAAAGTAATTTATGAACTTGGCGTTTGGGGT----CTTTCACTTAAGATAGAGTTGGTTCATAATTTAAT---------------------------ATGATTTCAGATACATTCTACAAGTCAGGGGACTAAGAAA i rheMac3.chr15 C 0 I 28 s macFas5.chr15 80879097 251 + 112612857 ataataagaaggataataa-----taatgataaCCCAGATATATAAAATTGACCTTACTGTTTAGTGAATTTGTTTCCTTGAGAGA---CCAAGGGAGACATTATGGTCACCCCGCCTTATTAATGAGCCCTTATTCTTGGTTATGTAGCACGGAAAGTAATTTATGAACTTGGCGTTTGGGGT----CTTTCACTTAAGATAGAGTTGGTTCATAATTTAAT---------------------------ATTATTTCAGATACATTCTACAAGTCAGGGGACTAAGAAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76928146 251 + 107442819 ataataagaaggataataa-----taatgataacccAGATATATAAAATTGACCTTACTGTTTAGTGAATTTGTTTCCTTGAGAGA---CCAAGGGAGACATTATGGTCACCCCGCCTTATTAATGAGCCCTTATTCTTGGTTATGTAGCACGGAAAGTAATTTATGAACTTGGCGTTTGGGGT----CTTTCACTTAAGATAGAGTTGGTTCATAATTTAAT---------------------------ATGATTTCAGATACATTCTACAAGTCAGGGGACTAAgaaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81193014 278 + 108555830 ataataagaaggataataa-----taatgataaCCCAGATATATAAAATTGACCTTACTGTTTAGTGAATTTGTTTCCTTGAGAGA---CCAAGGGAGACATTATGGTCACCCCGCCTTATTAATGAGCTCTTATTCTTGGTTATGTAGCATGGAAAGTAATTTATGAACTTGGCGTTTGAGGT----CTTTCATTTAAGATAGAGTTGGTTCATAATTTAATACGATTTCGGATACATTCTACAAGTCAATGATTTCGGATACATTCTACAAGTCAGGAGACTAAGAAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111426596 256 - 210400635 ATTATAAGAAGGataataatatattaataataaCCCAGATAAATCAAATGGGCTTTACTATTAAGTGAATTTGTTTCCCTGAGAGA---CAAAGGGAAACACTATGGTCAACCCACCTTATTAATGAGTCCTTATTCTGGGTTTTGTAGCATGGAAAAAAATTTATGAACTTCCCTTTTGAGGT----CTTGCACTTAAGACAGAGTTGATTTGCAATTTAAT---------------------------ATGATTTCAGATATACTCTACAAGTCATAGGACTAAGAAA i calJac3.chr1 C 0 C 0 s mm10.chr19 38073069 245 - 61431566 ACAATAAGGACGACAGTAGT----TAATGGCA---CAGTTAAATTCGATTGACCTTACTGTTCAGTAAATTCGTTTCTTCACAGTG---CTCAGGGCAACACTGTGGCCATCCCATCTTACTAACAAGCATTCTTTCT-GTATCTGGAGCATGGGAAATCATTATTGAAGCTGACCTTTGTGGCCTGACTTTCTCTGAAGATAGAGCAGGTCTGTAATA-------------------------------ATGCTTTCAGCTATATCCTATCAAACA---GACTAAGATA i mm10.chr19 C 0 C 0 s canFam3.chr1 35314565 260 - 122678785 AGAATATGAAGGATGACACTATATTCATGATAACCCAGATTAATGCAACTGACCTTAGCTTTTAGTGTTTTTTTTTTTTTTTGAGAGGCCCCAGGGAGGCA--GTGATTGCCCCATCTTATTAATGAGCCCTCATTCTGAGTTTTAGAGCATGAAGTAAAGTTT-TGAACCTGGCCTTTGTAGTATGACTTTCACTTAAGATAGAGTTGGTGTCTAATTTCAT---------------------------AGGGCTTCAGATACATTTCACAAGCAAGGGGACTGAGAAA i canFam3.chr1 I 207 C 0 a score=-1686.000000 s hg38.chr9_GL383541v1_alt 108419 3 + 171286 ttt s panTro4.chr9 68673841 3 + 137840987 ttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64829757 1 + 135191526 --t i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57865776 1 - 122973662 --T i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 111426852 1 - 210400635 --G i calJac3.chr1 C 0 C 0 s mm10.chr19 38073314 2 - 61431566 -AT i mm10.chr19 C 0 C 0 s canFam3.chr1 35314825 3 - 122678785 GAT i canFam3.chr1 C 0 C 0 e chlSab2.chr12 81193292 0 + 108555830 C e rheMac3.chr15 79799346 28 + 112192347 I e papAnu2.chr15 76928397 0 + 107442819 C e macFas5.chr15 80879348 0 + 112612857 C a score=-2121.000000 s hg38.chr9_GL383541v1_alt 108422 3 + 171286 ttt- s panTro4.chr9 68673844 3 + 137840987 ttt- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64829758 3 + 135191526 ttt- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57865777 3 - 122973662 ATT- i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 111426853 3 - 210400635 AAA- i calJac3.chr1 C 0 C 0 s mm10.chr19 38073316 4 - 61431566 ATTT i mm10.chr19 C 0 I 1258 e chlSab2.chr12 81193292 0 + 108555830 C e canFam3.chr1 35314828 0 - 122678785 C e rheMac3.chr15 79799346 28 + 112192347 I e papAnu2.chr15 76928397 0 + 107442819 C e macFas5.chr15 80879348 0 + 112612857 C a score=31013.000000 s hg38.chr9_GL383541v1_alt 108425 24 + 171286 tttttttttt-----gggaaggggaattg s panTro4.chr9 68673847 24 + 137840987 tttttttttt-----gggaaggggaactg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64829761 24 + 135191526 tttttttttt-----gggaaggggaactg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57865780 28 - 122973662 TTTCTTTTTTGGGGGGGGAAGGGTAACT- i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80879348 23 + 112612857 -TTTTTTTGG-----GGGGAGGGGAAGGG i macFas5.chr15 C 0 I 5 s papAnu2.chr15 76928397 23 + 107442819 -ttttttggg-----ggggaggggaaggg i papAnu2.chr15 C 0 I 5 s chlSab2.chr12 81193292 23 + 108555830 -TTTTTTTGG-----GGGGAGGGAAGGGG i chlSab2.chr12 C 0 I 5 s calJac3.chr1 111426856 24 - 210400635 tttttttttt-----gatgaggggaactg i calJac3.chr1 C 0 C 0 e mm10.chr19 38073320 1258 - 61431566 I e canFam3.chr1 35314828 0 - 122678785 C e rheMac3.chr15 79799346 28 + 112192347 I a score=786479.000000 s hg38.chr9_GL383541v1_alt 108449 265 + 171286 gggggtctcgctctgtcacccaggctagagtgcagtggtgcagtcacagctcaccacagcctcaaactcgtggcctcaagtgatattcctgtctcagccttctgggcagctgagactggctagtttttttg--------gtttttattttagtagagatgaggtctcactatgttgtccaggctggtcttgaactcttgagctcaagggatcctcccactttgtcctcccaaagtgctggcattacaggtgtgagccacAGTTTACATGGAAA s panTro4.chr9 68673871 264 + 137840987 gggggtctcggtctgtcacccaggctagagtgcagtggtgcagtcacagctcaccacagcctcaaactcgtggcctcaagtgatattcctgtctcagccttctgggcagctgagactggctagtgtttt-g--------gtttttattttagtagagatgaggtctcactatgttgtccaggctggtcttgaactcttgagctcaagggatcctcccactttgtcctcccaaagtgctggcattacaggtgtgagccacAGTTTACATGGAAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64829785 265 + 135191526 gggggtctcgctctgtcacccaggctagagtgcagtggtgcagttacagctcaccacagcctcaaactcgtggcctcaagtcatcttcctgtttcagccttctgggcagctgagactggctagttttttgc--------ttttttattttagtagagatgaggtctcactatgttgtccaggctggtcttgaactcttgagctcaagggatcctcccactttgtcctcccaaagtgctggcattacaggtgtgagccacAGTTTACATGGAAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57865808 265 - 122973662 GGgggtctcgctctgtcacccaggctagagtgcagtggtgcagtcacagctcactatagcctcaaactcctgggctcaagtgatcttcctgtcttagccttctgagcagctgagactggctagttttttgc--------ttgtttattttggtagagatgaggtctcagtatgttgtccaggctggtcttcaactcttgagctcaagggatcctcccactttgtcctcccaaagtgctggcattacaggtgtgagccacAGTTTACATGGAAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79799374 265 + 112192347 GGgggtcttgctctgtcactcaggctagagtgcagtggtgcagtcacaactcactacagcctcaaactcctgggctcaagtgatcgtcctgtctcagccttatgagcagctgggactggctagttttttgc--------ttgttcattttagtagagatgagctctcactatgttgtccaggctggtcttgaactcctgaactcaagggattctcccaccttggcctcccaaagtgctggcattacaggtgtgagccacAGTTTACATGGAAA i rheMac3.chr15 I 28 C 0 s macFas5.chr15 80879376 265 + 112612857 GGgggtcttgctctgtcactcaggctagagtgcagtggtgcagtcacaactcactacagcctcaaactcctgggctcaagtgatcgtcctgtctcagccttatgagcagctgggactggctagttttttgc--------ttgttcattttagtagagatgagctctcactatgttgtccaggctggtcttgaactcctgaactcaagggattctcccaccttggcctcccaaagtgctggcattacaggtgtgagccacAGTTTACATGGAAA i macFas5.chr15 I 5 C 0 s papAnu2.chr15 76928425 265 + 107442819 gggggtctcgccctgtcactcaggctagagtgcagtggtgcagtcacaactcactacagcctcaaactcctgggctcaagtgatcttcctgtctcagccttatgagcagctgggactggctagttttttgc--------ttgtttattttagtagagatgagctctcactatgttgtccaggctggtcttgaactcctgagctcaagggattctcccaccttggcctcccaaagtgctggcattacaggtgtgagccacagtttacatggaaa i papAnu2.chr15 I 5 C 0 s chlSab2.chr12 81193320 264 + 108555830 -Ggggtctcgctctgtcactcaggctagggtgcagtggtgcagtcacaactcactacagcttcaaactcctgggctcaagtgatcttcctgtctcagccttatgagcagttgggactggctagttttttgc--------ttgtttattttagtagagatgagctctcactatgttgtccaggctggtcttgaactcctgagctcaagggattctcccacctttgcctcccaaagtgctggcattagaggtgtgagccacAGTTTACATGGAAA i chlSab2.chr12 I 5 C 0 s calJac3.chr1 111426880 272 - 210400635 -agggtctcgctctgtcacccaggctagagtacagtggtgcagtcacagctcactacagcctcaaacttctgggctcaagtgatcttcctgtctcagcctcctgagcacctgggcgtagctagctttttgcttgtttgtttgtttgttttagtagagatgaggtctcattatgttgcctaggctggccttgaactcctaagctcaagggatctccccaccttggcctcccaaagtgttggtatcatagccatgagccacAGTTTACATAAAAA i calJac3.chr1 C 0 C 0 e mm10.chr19 38073320 1258 - 61431566 I e canFam3.chr1 35314828 0 - 122678785 C a score=910008.000000 s hg38.chr9_GL383541v1_alt 108714 292 + 171286 AATATTTTCAACTTGAGCTAAACTGTTACCCCAAAACTAGACAGCAATCTACTAATTTGCTGAAATTGAATACTATTTTTCCTAATTCTAAT--CTTTTAAAAGGTTGTAAAACAGATAGAACCAGATTAG--------ATTTACATACTTTT----TAATGATTTAATCCAAACAATAA-TCAAAGATTAAAAGAGTCTCTAAATTTGACAGAACACAGAAACCAACATTGTTTTACTTCTCTACATTTGATTCCTCCCTAATCCTATCAGTTGATATTTCAATTACATTCATAGTAATTTTATAA s panTro4.chr9 68674135 292 + 137840987 AATATTTTCAACTTGAGCTAAACTGTTACCCCGAAACTAGACAGAAATCTACTAATTTGCTGAAATTGAATACTATTTTTCCTAATTCTAAT--TTTTTAAAAGGTTGTAAAACAGATAGAACCAGATTAG--------ATTTACATACTTTT----TAGTGATTTAATCCAAACAATAA-TCAAAGATTAAAAGAGTCTCTAAATTTGACAGAACACAGAAACCAACATTGTTTTACTTCTCTACATTTGATTCCTCCCTAATCCTATCAGTTGATATTTCAATTACATTCATAGTAATTTTATAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64830050 290 + 135191526 AATATTTTCAACTTGAGCTAAACTGTTACCCCAAAACTAAACAGAAATCTACTAATTTGCTGAAATTGAATACTATTTTTCCTAATTCTAAT--TTTTTAAAAGGTTGTAAAACAGATAGAACCAGATTAG--------ATTTACATACTTTT----TAATGATTTAATCCAAACAATAA-TCAAAGATT--AAGAGTCTCTAAATTTGACAGAACACAGAAACCAACATTGTTTTACTTCTCTACATTTGATTCCTCCCTAATCCTATCAGTTAATATTTCAATTACATTCATAGTAATTTCACAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57866073 292 - 122973662 AATATTTTCAACTTGAGCTAAACTGTTACTCCAAAACTGGACAGAAATCTACTAATTTGCTGAAACTGAATACTATTTTTCCTAATTCTAAT--TTTTTTAAAGGTTGTAAAACAGATAGAACCAGATTAG--------ATTTACATACTTTT----TAATGATTTAATCCAAACAATAA-TCAAAAATTAAAAGAGTCTCTAAAATTGACAGAACACAGAAACCAACATTGTTTTACGTCTCTACATTTGATTCCTCCCTAATCATATCAGTTAATATTTCAATTACATTCATAGTAATTTCACAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79799639 288 + 112192347 AATATTTTCGACTTGAGCTAAACTGTTACCCCAAAACTAAACAGAAAT---CTAATCTGCTGAAATTGACTACTGGTTTTCCTAATTCTAAT---TTTTAAAAGGTTATAAAACAGATAGAACCAGACTAG--------ATTTACATACTTTT----TAATGATTTAATCCAAACAATAA-TCAAAGATTAAAATAGTCTCTAAATTTGATATAACACAGAAACCAACATTGTTTTACTTCTCTACATTTGATTCCTTTCTAATCCTATCAGTTAATATTTCAATTACATTCATAGTAATTTCACAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80879641 288 + 112612857 AATATTTTCGACTTGAGCTAAACTGTTACCCCAAAACTAAACAGAAAT---CTAATCTGCTGAAATTGACTACTGGTTTTCCTAATTCTAAT---TTTTAAAAGGTTATAAAACAGATAGAACCAGACTAG--------ATTTACATACTTTT----TAATGATTTAATCCAAACAATAA-TCAAAGATTAAAATAGTCTCTAAATTTGATATAACACAGAAACCAACATTGTTTTACTTCTCTACATTTGATTCCTTTCTAATCCTATCAGTTAATATTTCAATTACATTCATAGTAATTTCACAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76928690 288 + 107442819 aatattttcgACTTGAGCTAAACTGTTACCCCAAAACTAAACAGAAAT---CTAATCTGCTGAAATTGACTACTGGTTTTcctaattctaat---ttttaaaaggttataaaACAGATAGAACCAGACTAG--------ATTTACgtactttt----taatgatttaatcCAAACAATAA-TCAAAGATTAAAATAGTCTCTAAATTTGATATAACACAGAAACCAACATTGTTTTACTTCTCTACATTTGATTCCTCTCTAATCCTATCAGTTAATATTTCAATTACATTCATAGTAATTTCACaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81193584 291 + 108555830 AATATTTTCGACTTGAGCTAAACTGTTATCCCAAAACTAAACAGATATCTACTAATCTGCTGAAACTGACTACTGGTTTTCCTAATTCTAAT---TTTTAAAAGGTTGTAAAACAGATATAACCAGACTAG--------ATTTATATACTTTT----CAATGATTTAATCCAAACAATAA-TCAAAGATTAAGAGAGTCTCTAAGTTTGATATAACACAGAAACCAACATTGTTTTACTTCTCTACATTTGATTCCTCTCTAATCCTATAAGTTAATATTTCAATTACATTCATAGTAATTTCACAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111427152 291 - 210400635 AAAATTTCC-ACTTGAGCTAAACTATTACCCCAAAACTAGAGAGAAATGTACTAATTTGCTGAAACTGAATATTATTTTTCCTAATTCTAACTTTTTTTAAAAGGTGGTTAAACTGCTAGAACCAGACTAG--------ATTTACACACTTTT----TTATGATTTAATCCAAACAGTAA-TCAAAGATT--CAGAGTCTCTAACTATAACAGAACATAGAAACCAACATTGTGTTACTTCTCTACATTTGATTCCTCCCTAATTTTATCAGTTAATATTTCAATTACATTCATAGTAATTTCACAA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35314828 257 - 122678785 AATGTTTTCTACTTGAGCTAAAGTGTTACCCCCAAATTAGAGAGAAACACTCTAATGTGTTAAAACCAAATA---TTTTTTCTAATTCTAAT---TTTAAAAATGATCTAGCG-AAATGGAACCAGACAAGATATGCATATTTACATATTTTCATTAAAATGATTTAATCCAAACTATAACCCCAAGATTAAAGGGGTCTCGAAGTTGGACAG------------------------------------------TTCCCTACTCTCATGAGCTAGTATTTCAGTGGTGTT-ATCATAGTTGCATAA i canFam3.chr1 C 0 I 229 e mm10.chr19 38073320 1258 - 61431566 I a score=4584880.000000 s hg38.chr9_GL383541v1_alt 109006 1337 + 171286 TCTCTTTATCATTATTTTTAGACAAAATCTTTTTTCTATCACTAGGCAGTGACGCTGAAA------------------------------------TTTATATTCCCTTGTTTTGTCTAT-----------------------------------------GGTAGAAGAGGTGTTTATCTAATATCTGCGCTGGGCAGAGGGT-GGGTGAAGAGGCAGCTGGAAG--TAACAGAACCAACTGAATCACC-CACAAGTAATGTTCAGAAATGCTCCTCCTTTTG-AAAAAAAG----AGAATTTGTGTGAGCTCTTTCCTACTACACAGGTGGTCTGTCTGGTGAAAGGAAAAGAAACGTTCCAGCAAAACAAGGACCATGTGTTAAGAGGGCTGTTGATCCCTCAGTCTGCAAA-----------GCACAGACTCCTTCTGTGCAGGAACTTCCGCAGATATGAGTTCTTATACAGTTCGGTTAACCAAGTCTCCATACTGATCTTCAGAACTTCCCACTATGCCAGCTTGGCTTTAAA-TGGTTTAATTGCATCATCGTAGTGTTATGCTCAATCCACCAGGAATGtggattcacatccctattctgccacttccaagctatctggcatgggtcat--gttatttaacttctttgagactc--tttccacatctatag--caaagacggaagaagctgtttcatagacttgttgggaaagttaatgagttaatgtctgtgaaggccttagcacagagtatggtacacagaaaatgcttcatCATGAGAC--AGTATTATTTACTTTATTTTC-AAAAT-ATGACCA-CCCATCCCTGGAGAACAGTGGGTCAGATTGCAACTAAAGAGAACCAGCAAAGGGCACTAGCTTGATGATTGTGTCAGCTGGAGCCTGCTTTATGTCTTTCATTGAGCAGCTGTGGGCCAGAC--TGAGTCTTTAGAAGCTGAGCC-TTTTAATTTTCATACTTCATCTTACATTTCACAAATAGTTTATGCCCTTCTGTTTCATAACAGGTGCCAACA-TTTTTTCCTTAACTTGGTTAACTCCAGACTTCTTGTCTCTGCTTTTCCCAGCTGGACCTAGCATTTTCTTCCCTCATCTCC-CTAATAGGCTAAGACAGGAATCATATCAACATACACAGCATCTTGTTCCCACCATCTGGTTGCGTTTAGAGTTAATCCAGTCTCCCGGACCTGAGACCCATCTCATAGTCACAGGTACTCAACAGCAATGTCATGTGGCCCTCCAATGAACTGCCC---CCCACACCCGGTGCTTCCAGAGGACCGTGAGACCATCCCCCAC---------------------TTCCTTCTCCATCCCTTTGCC-CCCTCACTCTCCCCCTGCACAACCACATCTGTCCCAAAGTTTAGAAGATGGGAGCAAGCCTTCCTTTTGGTCTGTAAATCTTTGAATGCCT-AAGAGGTGAT s panTro4.chr9 68674427 1337 + 137840987 CCTCTTTATCATTATTTTTAGACAAAATCTTTTTTCTATCACTAGGCAGTGACACTGAAA------------------------------------TTTATATTCCCTTGTTTTGTCTAT-----------------------------------------GGTAGAAGAGGTGTTTATCTAATATCTGCGCTGGGCAGAGGGT-GGGTGAAGAGGCAGCTGGAAG--TAACCGAACCAACTGAATCACC-CACAAGTAATGTTCAGAAATGCTCCTCCTTTTG-AAAAAAAG----AGAATTTGTGTGAGCTCTTTCCTACTACACAGGTGGTCTGTCTGGTGAAAGGAAAAGAAAGGTTCCAGCAAAACAAGGACCATGTGTTAAGAGGGCTGTTGATCCCTCAGTCTGCAAA-----------GCACAGACTCCTTCTGTGCAGGAACTTCCGCAGATATGAGTTCTTATACAGTTCGGTTAACCAAGGCTCCATACTGATCTTCAGAACTTCCCACTATGCCAGCTTGGCTTTAAA-TGGTTTAATTGCATCATCGTAGTGTTATGCTCAATCCACCAGGAATGtggattcacatccctattctgccacttccaagctatctggcatgggtcat--gttatttaacttctttgagactc--tttccacatctatag--caaagacggaagaatctgtttcatagacttgttgggaaagttaatgaattaatgtctgtgaaggccttagcacagagtacggtacacagaaaatgcttcatCATGAGAC--AGTATTATTTACTTTATTTTC-AAAAT-ATGACCA-CCCATCCCTGGAGAACAGTGGGTCAGATTGCAACTAAAGAGAACCAGCAAAGGGCACTAGGTTGACGATTGTGTCAGCTGGAGCCTGCTTTATGTCTTTCATTGAGCAGCTGTGGGCCAGAT--TGAGTCTTTAGAAGCTGAGCC-TTTTAATTTTCATACTTCATCTTACATTTCACAAATAGTTTATGCCCTTCTGTTTCATAACAGGTGCCAACG-TTTTTTCCTTAACTTGGTTAACTCCAGACTTCTTGTCTCTGCTTTTCCCAGCTGGATCTAGCATTTTCTTCCCTCATCTCC-CTAATAGGCTAAGACAGGAATCATATCAACATACAAAGCATCTTGTTCCCACCATCTGGTTGCGTTTAGAGTTAATCCAGTCTCCCGGACCTGAGACCCATCTCATAGTCACAGGTACTCAACAGCAATGTCATGTGGCCCTCCAATGAACTGCCC---CCCACACCCGGTGCTTCCAGAGGACCGTGAGACCATCCCCCAC---------------------TTTCTTCTCCATCCCTTTGCC-CCCTCACTCTCCCCCTCCACAACCACATCTGTCCCAAAGTTTAGAAGATGGGAGCAAGCCTTCCTTTTGGTCTGTAAATCTTTGAATGCCT-AAGAGGTGAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64830340 1342 + 135191526 CCTCTTTATCATTATTTTTAGACAAGATCTTTTTTCTATCACTAGGCAGTGACACTGAAA------------------------------------TTTATATTCCCTTGTTTTGTCTAT-----------------------------------------GGTAGAAGAGGTGTTTATCTAATATCTGCGCTGGGCAGAGGGT-GGGTGAAGAGGCAGCTGGAGG--TAACAGAACCAACTTAATCACC-CACAAGTAATGTTCAGAAATGCTCCTCCTTTTG-AAAAAAAG----AGAATTTGTGTGAGCTCTTTCCTCCTACACAGGTGGTCTGTCTGGTGAAAGGAAAAGAAAGGCTCCAGCAAAACAAGGACCATGTGTTAAGAGGGCTGTTGACCCCTCAGTCTGCAAA-----------GTACAGATTCCTTCTGTACAGGAACTTCCACAGATATGAGTTCTTATACAGTTCGGTTAACCAAGACTCCATACTGATCTTCAGAACTTCCCACTATGCCAGCTTGGCTTTAAA-TGGTTTAATTGCATCATCGTAGTGTTATGCTCAATCCACCAGGAATGtggattcacatccctattctgtcacttccaagctatctggcatgggtcatgggttatttaacttctttgagactc--tttccacatctatag--gaaagatggaagaatctgtttcatagacttgttgggaaggttaataagttaatgtctgtgaaggccttagcacagagtatggtacacagaaaatgcttcatCATGAGAC--AGTATTATTTACTTTATTTTC-AAAAT-ATGCCCA-CCCATCCCTGGAGAACAGTGGATCAGATTGCAACTAAAGAGAACCAGCAAAGGGCACTAGCTTGATGATTGTGTCAGCTGGAGCCTGCTTTATGTCTTTCATTGAGCAGCTGTGGGCCAGAT--TGAGTCTTTAGAAGCTGAGCC-TTTTAATTTTCATACTTCATCTTACATTTCACAAATAGTTTATGCCCTTCTGTTTCATAACAGGTGCCAACA-TTTTTTCCTTATCTTGGTTAACTCCAGACTTCTTGTCTCTGCTTTTCCCAGCTGGATCTAGCATTTTCTTCCCTCATCTCC-CTAATAGGCTGAGACAGGAATCATATCAACATATGAAGCATCTTGTTCCCACCATCTGGTTGGGTTTAGAGTTAATCCAGTCTCCCGGACCTGAGACCCATCTCATAGTCACAGGTACTCAACAGCAATGTCATGTGGCCCTCCAATGAACTGCCCCCACCCCCGCCCCGTGCTTCCAGAGGACTGTGAGACCATCCCCCAC---------------------TTCCCCCTCCATCTCTTTGCC-CCCTCACTCTCCCCCTCCACAACCACATTTGTCCCAAAGTTTAGAAGATGGGAGCAAGCCTTCCTTTTGGTCTATAAATCTTTGAATGCCT-AAGAGGTGAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57866365 1335 - 122973662 CCTCTTTATCATTATTTTTAGACAAGATCTTTTTTCTATCACTAGGCAGTGACACTGAAA------------------------------------TTTGCATTCCCTTGTTTTGTCTAT-----------------------------------------GGTAGAAGAGGTGTTTATCTAATATCTGCGCTGGGCAGAGGGT-GGGTGAAGAGGCAGCTGGAGG--TAACAGAACCAACTGAATCACC-CAGAAGTAATGTTCAGAAATGCTCCTCCTTTTG-AAAAAAAG----AGAATTTGTGTGAGCTCTTTCCTACTATACAGGTAGTCTGTCTGGTGAAAGGAAAAGAAAAGTTCCAGCAAAACAAAGACCATGTGTTAAGAGGGCTGTTGACCCCTCAGTCTGCAAA-----------GTACAGACTCCTTTTGTGCAGGAACTTCCACAGATAGGAGTTCTTATACAGTTCGGTTAACCAAG-CTCCATACTGATCTTCAGAACTTCCCACTATGCCAGCTTGGCTTTAAA-TGGTTTAATTGCATCATCGTAGTGTTATGCTCAATCCACCAGGAATGGggattcacatctctattctgccacttccaagctatctggcatgggtcat--gttatttaacttctttgagactc--tttccatatctatag--ccaagatggaagaatctgtttcatagagctgttgggaaggttaatgagttaatgtctgtgaaggccttagcacagaatgtgatacacagaaaatgcttcatCATGAGAC--AATATTATTTACTTTATTTTC-AAAAT-ATGCCCA-CCCATCCCTGGAGAACAGTGGGTCAGATTGCAACTAAAGAGAACCAGCAAAGGGCACTAGCTTGATGATTGTGTCAGCTGGAGCCTGCTTTATGTCTTTCATTGAGCAGCTGTGGGCCAGAT--TGAGTCTTTAGAAGCTGAGCC-TTTTAATTTTCATACTTCGTCTTACATTTCACAAATAGTTTATGACC-TCTGTTTCATAACAGGTGCCAACA-TTTTTTCCTTATCTTGGTTAACTCCAGACTTCTTGTCTCTGCTTTTCCCAGCTGGATCTAGCATTTTCTTCCCTCATCTCC-CTAATAGGCTGAGACAGGAATCATATCAACATATGAAGCATCTTGTTCCCACCATCTGGTTGGGTTTAGAGTTAATCCAGTCTCCTGGACCTGAGACTCAACTCATAGTCACAGGTACTCAACAGCAATGTCATGTGGCCCTCCAATGAACTGCGC---CCCCCCCCCCGTGCTTCCAGAGGACCATGAGACCATCCCCCAT---------------------TTCCCTCTCCATCCCTTTGAC-CCCTCACTTTCCCCCTCCACAACCACATTTGTCCCAAAGTTTAGAAGATGGGAGCAAGCCTTCCTTTTGGTCTGTAAATCTTTGAATGCCT-AAGAGGTGAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79799927 1334 + 112192347 CCTCTTTATCATTATTTTTAGACAAAGTCTTCTTTCTATCACTAGGCAGTGACACTGAAA------------------------------------TTTATATTGCCTTGTTTTGTCTAT-----------------------------------------GGGAGAAGAGGTGTTTATCTAATATCTGCACTGGGCAGAGAGT-GGGTGAAGAGGCAGCTGGAGG--TAACAGAACCAACTGAATCACC-CAGAAGTAATGTTCAGAAATGCTCCTCCTTTTGAAAAAAAAG----AGAATTTGTGTGAGTTCTTTCCTGCTACACAGGTGGTCTGTCTGGTGAAAGGAAAAGAAAGCATCCAGCAAAACAAGGACCATGTGTTAAGAGGGCTGTTGACCCCTCAGTCTGCAAA-----------GTACAGACTCCTTCTGTGCAGGAACTTTCACATATATGAGTTCTTATACAGTTAGGTTAACCAAGGCTCCATACTCATCTTCAGAACTTCCCACTAAGCCAGTTTGGCTTTAAA-TGGTTTAATTGCATCATCGTAGTGTTATGCTTAATCCACCAGGAATGtggattcacatccctattctgctacttccaagctatgtggcatgggtcac--gttatttaac----ttgagactctatttccacatctatag--gaaagatggaagaatctgtttcacagagttgttgggaaggttaatgagttaatgtctgtgaaggccttagcacagagtatgatacacagcaaatgcttcatCATGAGAC--AATACTATTTACTTTATTTTC-AAAAT-ATGCCCA-CCCATCCCTGGAGAACAGTGGGTCAGATTGCAACTAAAGAGAACCAGCAAAGGGTACTTGCTTGATGATTGTGTCAGCTGGAGCCTGCTTTATGTCTTTCATTGAGCAGCTGTGGGCCAGAT--TGAGTCTTTAGAAGCTAAGCC-TTTTAGTTTTCATACTTCATCTTACATTTCACAAATAGTTTATGCCCTTCTGTTTCATAACAGGTGCCAACA-TTTTTTCCTTATCTTGGTTAACTCCAGACTTCTTGTCTCTGCTTTTCCCAGCTGGATCTAGCATTTTCTTCCCTCATCTCC-CTAATAGGCTGAGACAGGAATCATTTCAACATACGAATCATCTTGTTCCCACCATCTGGTTGGGTTTAGAGTTAATCCAATCTCCTGGACCTGAGACCCCTCTCATAGTCACAGGTGCTCAACAGCAATGTCATGTGGCCCTCCAATGAACTGCCC---CCCTC-CCCAGTGCTTCCAGAGGACAGTGAGACCACcccccac---------------------ttcc-tctccatccctttgcc-ccctcactctccccctccACAACCACATTTGTCCCAAATTTTAGAAGATGGGAGCAAGACTTCCTTTTGGTCTGTAAATCTTTGAATGCCT-AAGAGGTGAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80879929 1334 + 112612857 CCTCTTTATCATTATTTTTAGACAAGGTCTTCTTTCTATCACTAGGCAGTGACACTGAAA------------------------------------TTTATATTGCCTTGTTTTGTCTAT-----------------------------------------GGGAGAAGAGGTGTTTATCTAATATCTGCACTGGGCAGAGAGT-GGGTGAAGAGGCAGCTGGAGG--TAACAGAACCAACTGAATCACC-CAGAAGTAATGTTCAGAAATGCTCCTCCTTTTGAAAAAAAAG----AGAATTTGTGTGAGTTCTTTCCTGCTACACAGGTGGTCTGTCTGGTGAAAGGAAAAGAAAGCATCCAGCAAAACAAGGACCATGTGTTAAGAGGGCTGTTGACCCCTCAGTCTGCAAA-----------GTACAGACTCCTTCTGTGCAGGAACTTCCACATATATGAGTTCTTATACAGTTAGGTTAACCAAGGCTCCATACTCATCTTCAGAACTTCCCACTAAGCCAGTTTGGCTTTAAA-TGGTTTAATTGCATCATCGTAGTGTTATGCTTAATCCACCAGGAATGtggattcacatccctattctgctacttccaagctatgtggcatgggtcac--gttatttaac----ttgagactctatttccacatctatag--taaagatggaagaatctgtttcacagagttgttgggaaggttaatgagttaatgtctgtgaaggccttagcacagagtatgatacacagcaaatgcttcatCATGAGAC--AATACTATTTACTTTATTTTC-AAAAT-ATGCCCA-CCCATCCCTGGAGAACAGTGGGTCAGATTGCAACTAAAGAGAACCAGCAAAGGGTACTTGCTTGATGATTGTGTCAGCTGGAGCCTGCTTTATGTCTTTCATTGAGCAGCTGTGGGCCAGAT--TGAGTCTTTAGAAGCTAAGCC-TTTTAGTTTTCATACTTCATCTTACATTTCACAAATAGTTTATGCCCTTCTGTTTCATAACAGGTGCCAACA-TTTTTTCCTTATCTTGGTTAACTCCAGACTTCTTGTCTCTGCTTTTCCCAGCTGGATCTAGCATTTTCTTCCCTCATCTCC-CTAATAGGCTGAGACAGGAATCATTTCAACATACGAATCATCTTGTTCCCACCATCTGGTTGGGTTTAGAGTTAATCCAATCTCCTGGACCTGAGACCCCTCTCATAGTCACAGGTGCTCAACAGCAATGTCATGTGGCCTTCCAATGAACTGCCC---CCCTC-CCCAGTGCTTCCAGAGGACAGTGAGACCACCCCCCAC---------------------TTCC-TCTCCATCCCTTTGCC-CCCTCACTCTCCCCCTCCACAACCACATTTGTCCCAAATTTTAGAAGATGGGAGCAAGACTTCCTTTTGGTCTGTAAATCTTTGAATGCCT-AAGAGGTGAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76928978 1337 + 107442819 cctctttatcattatttttagacaaggtcttttTTCTATCACTAGGCAGTGACACTGAAA------------------------------------TTTATATTGCCTTGTTTTGTCTAT-----------------------------------------GGGAGAAGAGGTGTTCATCTAATATCTGCACTGGGCAGAGAGT-GGGTGAAGAGGCAGCTGGAGG--TAACAGAACCAACTGAATCACC-CAGAAGTAATGTTCAGAAATGCTCctccttttgaaaaaaaag----agaatttgtgtGAGCTCTTTCCTACTACACAGGTGGTCTGTCtggtgaaaggaaaagaaagcatccAGCAAAACAAGGACCATGTGTTAAGAGGGCTGTTGACCCCTCAGTCTGCAAA-----------GCACAGACTCCTTCTGTGCAGGAACTTCCACATATATGAGTTCTTATACAGTTAGGTTAACCAAGGCTCCATACTCATCTTCAGAACTTCCCACTAAGCCAGTTTGGCTTTAAA-TGGTTTAATTGCATCATCGTAGTGTTATGCTTAATCCACCAGGAATGTGGATTCACATCCCTATTCTGCTACTTCCAAGCTATGTGGCATGGGTCAC--GTTATTTAAC----TTGAGACTCTATTTCCACATCTACAG--TAAAGATGGAAGAATCTGTTTCACAGAGTTGTTGGGAAGGTTAATGAGTTAATGTCTGTGAAGGCCTTAGCACAGAGTATGATACACAGCAAATGCTTCATCATGAGAC--AATactatttactttattttctaaaataatgccCA-CCCATCCCTGGAGAACAGTGGGTCAGATTGCAACTAAAGAGAACCAGCAAAGGGTACTTGCTTGATGATTGTGTCAGCTGGAGCCTGCTTTATGTCTTTCATTGAGCAGCTGTGGGCCAGAT--TGAGTCTTTAGAAGCTAAGCCTTTTTAGTTTTCATACTTCATCTTACATTTCACAAATAGTTTATGCCCTTCTGTTTCATAACAGGTGCCAACA-TTTTTTCCTTATCTTGGTTAACTCCAGACTTCTTGTCTCTGCTTTTCCCAGCTGCATCTAGCATTTTCTTCCCTCATCTCC-CTAATAGGCTGAGACAGGAATCATTTCAACATACGAATCATCTTGTTCCCACCATCTGGTTGGGTTTAGAGTTAATCCAATCTCCTGGACCTGAGACCCATCTCATAGTCACAGGTGCTCAACAGCAATGTCATGTGGCCCTCCAATGAACTGCCC---CCCTC-CCCAGTGCTTCCAGAGAACAGTGAGACCAccccccac---------------------ttcc-tctccatccctttgcc-ccctcactctccccctccACAACCACATTTGTCCCAAATTTTAGAAGATGGGAGCAAGCCTTCCTTTTGGTCTGTAAATCTTTGAATGCCT-AAGAGGTGAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81193875 1335 + 108555830 CCTCTTTATCATTATTTTTAGACAAGGTCTCTTTTCTATCACTAGGCAGTGACACTGAAA------------------------------------TTTATATTGCCTTGTTTTGTCTAT-----------------------------------------GGGAGAAGAGGTGTTTATCTAATATCTGCACTGGGCAGAGGGT-GGGTGAAGAGGCAGCTGGAGG--TAACAGAACCAACTGAATCACC-CAGAAGTAATGTTCAGAAATGCTCCTCCTTTTG-AAAAAAAG----AGAATTTGTGTGAGCTCTTT-CTACTACACAAGTGGTCTGTCTGGTGAAAGGAAAAGAAAGCGTCCAGCAAAGCAAGGACCATGTGTTAAGAGGGCTGTTGACCCCTCAGTCTGCAAA-----------GTACAGACTCCTTCTGTGCGGGAACTTCCACATATATGAGTTCTTATACAGTTAGGTTAACC-AGGCTCCATACTCATCTTCAGAACTTCCCACTAAGCCAGTTTGGCTTTAAA-TGGTTTAATTGCATCATCGTAGTGTTATGCTTAATCCGCCAGGAATGtggattcacatccctattctgccacttccaagctatgtggcatgggtcat--gttatttaacttctttgagactctatttccacatctatag--taaagatggaagaatctgtttcacagagttgttgggaaggttaatgagttaatgtctgtgaaggccttagcgcagagtatgatacacagcaaatgcttcatCATGAGAC--AATATTATTTACTTTATTTTC-AAAAT-ATGCCCA-CCCATCCCTGGAGAACAGTGGGTCAGATTGCAACTAAAGAGAACCAGCAAAGGGTACTTGCTTGATGATTGTGTCAGCTGGAGCCTGCTTTATGTCTTTCATTGAGCAGCTGTGGGCCAGAT--TGAGTCTTTAGAAGCTAAGCC-TTTTAGTTTTCATACTTCATCTTACATTTCACAAATAGTTTATGCCCTTCTGTTTCATAACAGGTGCCAACA-TTTTTTCCTTATCTTGGTTAACTCCAGACTTCTTGTCTCTGCTTTTCCCAGCTGGATCTAGCATTTTCTTCCCTCATCTCC-CTAATAGGCTGAGACAGGAATCATTTCAACATACGAATCATCTTGTTCCCACCATCTGGTTGGGTTTAAAGTTAATCCAATCTCCTGGACCTGAGACCCATCTCATAGTCACAGGTGCTCAACAGCAATGTCATGTTGCCCTCCAATGAACTGCCC---CCCTC-CCCAGTGCTTCCAGAGAACAGTGAGACCACCCCCCAC---------------------TTCC-TCTCCATCCCTTTGCC-CCCTCACTCTCCCCCTCCACAACCGCATTTGTCCCAAATTTTAGAAGATGGGAGCAAGCCTTCCTTTTGGTCTATAAATCTTTGAATACCT-AAGAGGTGAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111427443 1293 - 210400635 CCTCTTTATCATTGTTTTTAGAAAGGGTCTTTTTTCTATCATGAGGCAGTTACACTGAAA-----------------------------------TTTTATATTCCCCAGTTTTGTCGAT-----------------------------------------GGGAGAAGAGGCGT-----TAATATCTGCACTGGGCAGGGGGT-GGGTGAAGAGGCAGCTGGAGG--TAATAGAACCAACTGAGTCACC-CAGAAGTAGTGTTCAGAAATGCTCCTCCTTTCA-AAAAAAAAATACAGAATTTGTTTGAGCTTTTTCTTGCTACACGGGTGGTCTGTCT-GTGAAAGGAAAAGAAAGGTTCCAGCATAACAAGGACCATGTGCTAAGAGGGCTGTTGACCCCTCAGTCTGCAAA-----------CTACAGACTCCTTCTGTGCAGGAACTTCCATAGATATGAGTTCTTACATCGTTAGGTTAACCAAGACTCCATATTGATCTTCAGAACTTCCCACTGGGCCAGCTTGGCTTTAAA-TGGTTTAATTGCGTCATCATAGTGTTATGTt--------caggaatgtggattcatatccctattctgccacttccgagctatgtggtgtgggtcat--gttatttaacttctttgagactctatttccacatctctag--caaagatggaagaatctgtttcacagagttgttgagaaggttaatgagttaatgtctgtgaaggccttggcacagagtatgacacacagaaaatgcttcatCGTGAGAT--AA---TATTTACTTTATTTTC-AAAATAATGCTCA-CCCATCCCTGGAGAACTGTGGATCAGATTGCAACTAAAGAGAACCAGCAAAGGGCACTGGCTTGATAACTATGTCAGCTGGAGCCTGCTTTATGTCTTTCACTGAGCAGGTGTGGGCCAGAT--TGAGTCTTTAGATGCTGAGCC-TTCTAGATTTGATACTTCATCTTACATTTCACAAATAGTTTATGCCCTTCTGTTTCATAACAGGTGCCAACATTTTTTTCCTTATCTTGGTTAGCTCCAGCCTTTTTGTCTCTGCTTTTCCCAGCTGGATCTAGCATTTTCTTCTCTCATCTCC-CTAATAGGCTGAGACAGGAAATATATCAACATATGAAGCATCTTGTTCCCACCATCTGGTTGGGTTTAGAGTTAATCCAGTCTCCC-------AGACCCATCTTATAGTCACAGGTGCTCAACAGCAATGTCATGTGGCC--------------------------------CTTCCAGAGGACAGTGAGACCA-CCCCCAC---------------------TTCCCTTTCCATCCCTTTGCA-CCCACACTCTCCCCCGTCACAACCATCTTTATCCCAAAGTTTAGAAGATGGGAGCAAGCCTTTCTTTTGGTCTGTAAATCTTTGAATGCCTGAAGAGGTGAT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35315314 1432 - 122678785 ccCCTTTATCATTATTTTTGAAAAGTTTCTCCTGTTTGTCACCAGACATTTACATTGAACttttctttatttttattttattttattttattttattttattttattttattttatttatttttttACATTGAACTTTTCTATTTCCAAATTATTCATATGGGAAAAAGGGGTGTTTATTCAGTATCTGCACAGGGTTGATGGTGGGGTGAAGATGCAGGTGAGAGGTTAACAGTATCTACTGAACCACCTTACAAGTAATGTTTGAAAACACTCTCCCTTTTAAAAAGATAC----AGAATCTATATGAGGGCTTTCCCA-------------CCGACTGGTGAAAAGAAAAGAAAGATTCCAGCAAAATAAGGACCATTTGTTAAAAGGTCCAATAGCCCTTCAGTCTGTAAAATTCAGCCCACATACAGGCCCTTCCTCTGCGGGGACCACCAGCGATTCACAATTTCATGTAATTAGGTTAGCCAAG-TTCCATACTGGTCTTCAGAACTTCCCAACCTGGCAACTTTGCTTTAAACTAGTTTAATTGCATgagcatggtgttctccaaagt----cgggactttggattcacatcactgctctgccatttgcaaactgtgtgaccttgggtat--gttaattaacctctctgagcttctgtttccacatttgtgggacaaggttagaaggatctgtcctgcatagttg----ggaagatgatgagttaatttctgtgaaggccttag--cagaatatggcacacagaaaatgctTGGCCATGAGGCTTCGTGTGATTTACTTAACTTTC-AAAAT-ATGCCCATCCTTTCCCTGGGAACCAGGGAGTCAGCTTGAAACTGAGGAGAACCAGCAAAGGGCACCGCTTTGGTGAATGGGTGAGCTGGAGCCTCCTTTGTGCTGTTCCTTCAGCAGCTGTCGGCCAGATTCTGAGTC-TTAGAAGCTGAGCT-CTCCGTTTTTCATACTTCATCTTACATTTCACAAATAGTTTATGCCCTTCTGTTTCATAACAGGTGCCAACATTTTTTTCCTTATCTTGGTTAGCTCCAGACTTGTTGTCTCTGCTTTTCCCAGCTGGATCTAGCATTTTCTTCCCTCATCCCCTTTAGTAGGCCAAGACAGGAATTATTTCAACATATGAAGCGTCTCGTTCCCACCATCTGGTTGGGCTTAGTGTTAATCCAATCTCCCAGACCTGGGACCCATCACAGAGTCACAGGTGTTAAACACCAGTGTCATGTCGCTCCCCAA------GTAT---TCCCC-CAAGATGCTGCCAGAGAACAGTGAGACCTCTCCACGCCCCCTCCTTGAGTTAGGGCAGTTCCCTTTCCAAGCCTCTCCCACCCACAACCTCTCTGTCCTCCACCACATTTGGCTTAGCGCCTGGACCATGGGAATAAGCTCTCATTTTAAACTGTAAAGCCTTGAATGGCT-GACAGGTGAT i canFam3.chr1 I 229 C 0 e mm10.chr19 38073320 1258 - 61431566 I a score=3937193.000000 s hg38.chr9_GL383541v1_alt 110343 1167 + 171286 CCCATTCACTTCTA-GAATCCTGCCATAAAGCCCAGCCTCAAACTGAGAGCT-CTACTGCTCTGCCATATGCAGACCCAATCTCCTTTCTGGGCTTGGGTCCACCCCACA-----CCCAGTGACTGGGTATATCCTAACACTCATGG--------GAACGCCTCTCAGAGAATCACT-----ACCTAAATCCCAATATTGGCCATTCACTGACAAC---ACATTGCCCCAACCTCCTGTCT--GTTTGGAAACCCAGGCCCAATTACTGCCTAGGCTACAGCTAAGGTTGCCCCAGCCTTTCTTATCTTAAGTGCCCCCAAGGGTCTCCACAGCCTAGTCGGTGACTCTG-----GCCCTTGTTTCCCCATTGGTCTTCAGTGTGGTGCCAGGTCCCACTGCCTCTCCTACCCAAGCCAGCTTTGAGCTGTCTCAGCCT-----GCTTTTGGGCTGGCACATGCTAGAGTAAAACTACCCTGCAAGGTTAGCAGTGTAGAGAACACACTGCCCCCAGTATCTATCTTT--TAGTACTCTA-GGGGCTGATGAGCCT------------------TTTAG-TCTGTGGGACCGATGTTGAGTTTCTCTCCGTGAACT-CCAGGGAGCAGAGGAAACGATGAGAAATGTTTCCAACTACTCT---CAAACTGCAACACACTCCCGCTAATTAGATTATCTTCAAAGCTTCT-CATTTCTTAAAAGTTCAAATGTCAGAAAGCAAGTAATTAACTAAACCTTACATTATGATGCTTTTTGGTAAGTTGCTTAAAGGGGCTTTAGTTCTTTT-TTCTTTTTTTCTTGATCATCAACAGATGCTCAGAGGCTTCCAACTGC---CTCTGATTCCTCCCTATGCTTCAAATACATCATT-GCACTTCCCAGCAGCTAAATTTGTGATCTGCCCTTTACTAACAC-CTCTGAAACAAGCTTGAAGCAAAGCCTCTGCACCCA-CTC-----------------------AGGTCACAGACAGG-CCTCTGG----CCCCATCTTCAGGAATCAGAC-ACTGTCTCAGGGTAGAAGCAGCACTCTAGGTGAAAAAGATTTAGCCCCTGAGTTATGCTTTTGAGA-TTTTTTTTT---------------ATCAGACCTCCTCAAGACCCCAGGAAAATCCATTT---C-AAATCTATTCAT-TAGCAAAATATTAT----------AATCCCATCATCAGAAAAATATTTTCTGTATGACTCAG--TCTA------------TC-------------------------ACCATGGAGAGAAGTGATCCTGGCTTACTTTTAA s panTro4.chr9 68675764 1167 + 137840987 CCCATTCACTTCTA-GAATCCTGCCATAAAGCCCAGCCTCAAACTGAGAGCT-CTACTGCTCTGCCATATGCAGACCCAATCTCCTTTCTGGGCTTGGGTCCACCCCACA-----CCCAGTGACTGGGTATATCCTAACACTCATGG--------GAACACCTCTCAGAGAATCACT-----ACCTAAATCCCAATATTGGCCATTCACTGACAAC---ACATTGCCCCAACCTCCTGTCT--ATTTGGAAACCCAGGCCCAATTACTGCCTAGGCTACAGCTAAGGTTGCCCCAGCCTTTCTTATCTTAAATGCCCCCAAGGGTCTCCACAGCCTAGTCGGTGACTCTG-----GCCCTTGTTTCCCCATTGGTCTTCAGTGTGGTGCCAGGTCCCACTGCCTCTCCTACCCAAGCCAGCTTTGAGCTGTCTCAGCCT-----GCTTTTGGGCTGGCACATGCTAGAGTAAAACTACCCTGCAAGGTTAGCAGTGTAGAGAACACACTGCCCCCAGTATCTATCTTT--TAGTACTCTA-GGGGCTGATGAGCCT------------------TTTAG-CCTGTGGGACCGATGTTGAGTTTCTCTCCGTGAACT-CCATGGAGCAGAGGAAACGATGAGAAATGTTTCCAAGTACTCT---CAAACTGCAACACACTCCCGCTAATTAGATTATCTTCAAAGCTTCT-CATTTCTAAAAAGTCCAAATGTCAGAAAGCAAGTAATTAACTAAACCTTACATTATGATGCTTTTTGGTAAGTTGCTTAAAGGGGCTTTAGTTCTTTT-TTCTTTTTTTCTTGATCATCAACAGATGCTCAGAGGCTTCCAACTGC---CTCTGATTCCTCCCTATGCTTCAAATACATCATT-GCACTTCCCAGCAGCTAAATTTGTGATCTGCCCTTTACTAACAC-CTCTGAAACAAGCTTGAAGCAAAGCCTCTGCACCCA-CTC-----------------------AGGTCACAGACAGG-CCGCTGG----CCCCATCTTCAGGAATCAGAC-ACTGTCTCAGGGTAGAAGCAGCACTCTAGGTGAAAAAGATTTAGCCCCTGAGTTATGCTTTTGAGA-TTTTTTTTT---------------ATCAGACCTCCTCAAGACCCCAGGAAAATCCATTT---C-AAATCTATTCAT-TAGCAAAATATTAT----------AATCACATCATCAGAAAAATATTTTCTGTATGACTCAG--TCTA------------TC-------------------------ACCATGGAGAGAAGTGATCCTGGCTTACTTTTAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64831682 1167 + 135191526 CCCATTCACTTCTA-GAATCCTGCCATAAAACCCAGCCTCAGACTGAGAGCT-CTACTGCTCTGCCATATGCAGACCCAATCTCCTTTCTGGGCTTGGGTCCACCCCACA-----CCCAGGGACTGGGTTGATCCTAACACTCATGG--------GAACGCCTCTCAGAGAATCACT-----ACCTAAATCCCAATATTGGCCATTCACCGACAAC---ACATTGCCCCAACCTCTTGTCT--ATTTGGAAACCCAGGCCCAATTGCTGCCTAGGCTACAGCTAAGGTTGCCCCATCCTTTCTTATCTTAAATGCCCCCAAGGGTCTCCACAGCCTAGTCAGTGACTCTG-----G-CCTTGTTTCCCCATAGGTCTTCAGTGTGGTGCCAGGTCCCACTGCCTCTCCTACCCAAGCCAGCTTTGAGCTGTCTCAGCCT-----GCTCTTGGGCTGGCACATGCTAGAGTAAAACTACCCTGCAAGGTTAGCAGTGTAGAGAACACACTGCCCCCAGTATCTATCTTT--TAGCACTCTA-GGGGCTATTGAGCCT------------------TTTAGATCTGTGGAACCAATGCTGAGTTTCTCTCCATGAACA-CCATGGAGCAGAGGAAAGGATGAG-AATGTTTCCAACTACTCT---CAAACTGCAACACACTCCTGCTAATTAGATTATCTTCAAAGCTTCT-CATTTCTAAAAAGTTCAAATGTCAGAAAGCAAGTAATTAACTAAACCTTACATTATGATGCTTTTTGGTAAGTTGCTTAAAGGGGCTTTAGTTCTTTT-TTCTTTTTTTCTTGATCATCAACAGATGCTCAGAGGCTTCCAACTGC---CTCTGATTCCTCCCTATGCTTCAAATACATCATT-ACACTTCCCAGCAGCTAAATTTGTGACCCGCCCTTTACTAACAC-CTCTGAAACAAGCTTGAAGCAAAGCCTCTGCACCCA-CTC-----------------------AGGTCACAAACAGG-CCTCTGG----CCCCATCTTCAGGAATCAGAC-ACTGTCTCAGGGTAGAAGCAGCACTCTAGGTGAAAAAGATTTAGCCCCTGAGTTATGCTTTTGAGATTTTTTTTTT---------------ATCAGACCTCCTCAAGACCCCAGGAAAATCCATTT---C-AAATCTATTCAT-TAGCAAAATATTAT----------AATCACATCATCAGAAAAATATTTTCTGTATGACTCAG--TATA------------TC-------------------------ACCATGGAGAGAAGTGATCCTGGCTTACTTTTAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57867700 1162 - 122973662 CCCATTCACTTCTAGGAATCCTGCCATAAAGCCCAGCCTCAAACTGAGAGCT-CTACTGCTCTGTCATATGCAGACCCAATCTCTTTTCTGGGCTTGGGTCCACCCCACA-----CCCAGGGACTGGGTAGACCCTAACACTCATGG--------GAATGACTCTCAGAGAATCACT-----ACCTGAATCCCAATATCGGCCATTCACTGACAAC---ACACTGCCCCGACCTCTAGTCT--ATTTGGAAACCCAGGCCCAATTGCTGCCTAGGCTACAGCTAAGGTTGCCCCAGCCTTTCTTATCTTAAATGCCCCCAAGGGTCTCCACAGCCTAGTCAGTGACTCTG-----GCCCTTGTTTCCCCATAGGTCTTCAGTGTGGTGCCAGGTCCCATTGCCTCTCCTACCCAAGCCAGCTTTGAGCTGTCTCAGCCT-----GCTCTTGGGCTAGCACATGCTAAAGTAAAACTACCTTGCAAGGTTAGCAGTGTAGAGAACACACTGCCCCCAGTATCTATCTTT--TAGCACTCTA-GGGGCTGATGAACCT------------------TTTAGATCTGTGGGACCGATGCTGAGTTTCTCTCCATGAACT-CCATGGAGCAGAGGAAAGGATGAGAAATGTTCCCAACTACTCT---CAAACTGCAACACACTCCTGCTAATTAGATTATCTTCAAAGCTTCT-CATTTCTAAAAAGTTCAAATATCAGAAAGCAAGTAATTAACTAAACCTTACATTATGATGCTTTTTGGTAAGTTGCTTAAAGGGGCTTTAGTTCTTTC-TTCTTTTTTTCTTGATCATTAACAGATGCTCAGAGGCTTCCAACTGC---CTCTGATTCTTCCCTATGCTTCAAATACATCATT-ACACTTCCCAGCAGCTAAATTTGTGATCCGCCCTTTACTAACAC-CTCTGAAACAAGCTTGAAGCAAAGGCTCTGCACTCA-CTC-----------------------AGGTCACGAACAAG-CCTCTGG----CCCCATCTTCAGGAATCAGAC-ACTGTCTCAGGGTAGAAGCAGCACTCTAGGTGAAAAAGATTTAGCCCCTGAGTTACGCCTTTGAGATTTTTTTTTT---------------ATCAGACCTCCTCAAGAGCCCAAGAAAATCCATTT---C-AAATCTATTCAT---------TATGAC----------AATCACATCATCAGAAAAATATTTTCTGTATGACTCAG--TCTA------------TC-------------------------ACCATGGAGAGAAGTGATCCTTGTTTACTTTTAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79801261 1131 + 112192347 CCCATTCACGTCTAGGAATCCTGCCATAAGGCCCAGCCTCAAACTGAGAGCT-CTACTGCTCTGCCATAT---------------------------------------------GCCAGGGACTGGGTAGATCCTAACACTCATGG--------GTACGCCTCTCAGAGAATCAAT-----ACCTAAA-CCCAATATCAGCCATTCACTGACAAC---ACACTGCCCCGACCTCTTGTCT--ATTTGGAAACCCAGGCCCAATTGCTGCCTAGGCTACAGCTAAGGCTGCCCCAGCCTTTCTTATCTTAAATGCCCCCAAGGGTCTCCATAGCCTAGTCAGTGAGCCTG-----GCCCTTGTTTCCCCATAGGTCTTCAGTGTGGTGCCAGGTCCCACTGCCTCTCCTACCCAAGCCAGCTTTGAGCTGTCTCAGCCT-----GCTCTTGGGCAGGCACATGCTGAAGTAAAACTACCCTGCAAGGTTGGAAGTGTAGAAAACACATTGCCCCCAGTATCTATCTTT--TAGCACTCTA-GGGGCTGACGAGCCT------------------TTTAGATCTGTGGGGTTGATGCTGAGTTTCTTTCCATGAACT-CCATGGAGCAGAGGAAAGGATGAGAAATGTTCCCAACTACTCT---CAAACTGCAACACATTCCTGCTAATTAGATTATCTTCAAAGCTTCT-CATTTCTAAAAAGTTCAAATGTCAGAAAGCAAGTAAT----TAAAGCTTACATTATGATGCTTTTTGGTAAGTTGCTTAAAGGGGCTTTAG--------TTCTTTTTTTCTTGATCACCAACAGATGCTCAGAGGCTTCCAACTGC---CTCTGATTCCTCCCTATGCTTCAAATACATCATT-ACACTTCCCAGCAGCTCAATTTGTGATCCGCCCTTTACTAACAC-CTCTGAAACAAGCTTGAAGCAAAGGCTCTGCACCCA-TTC-----------------------AGGTCATAAACAGG-CCTCTGG----CCCCATCCTCAGGAATCAGAC-ACTGTCTCACGGCAGAAGCAGCACTCTAGGTGAAAAAGATTTAGCCCTTGAGTTAGGCTTTTGAGGTTTTCTTCTT--TTTTTTTTTTTTAATCAGACCTCCTCAAGACCCCAGGAAAATCCATTT---C-AAATCTATTCAT-TAGCAAAATATTAT----------AATCACATCATCAGAAAAATATTTTCTGTATGACTCAG--TCTA------------TC-------------------------ACCATGGAGAGAAGTGATCCTTGCTTACTTTTAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80881263 1133 + 112612857 CCCATTCACGTCTAGGAATCCTGCCATAAGGCCCAGCCTCAAACTGAGAGCT-CTACTGCTCTGCCATAT---------------------------------------------GCCAGGGACTGGGTAGATCCTAACACTCATGG--------GTACGCCTCTCAGAGAATCAAT-----ACCTAAACCCCAATATCAGCCATTCACTGACAAC---ACACTGCCCCGACCTCTTGTCT--ATTTGGAAACCCAGGCCCAATTGCTGCCTAGGCTACAGCTAAGGCTGCCCCAGCCTTTCTTATCTTAAATGCCCCCAAGGGTCTCCACAGCCTAGTCAGTGAGCCTG-----GCCCTTGTTTCCCCATAGGTCTTCAGTGTGGTGCCAGGTCCCACTGCCTCTCCTACCCAAGCCAGCTTTGAGCTGTCTCAGCCT-----GCTCTTGGGCAGGCACATGCTGAAGTAAAACTACCCTGCAAGGTTGGCAGTATAGAAAACACATTGCCCCCAGTATCTATCTTT--TAGCACTCTA-GGGGCTGACGAGCCT------------------TTTAGATCTGTGGGGTTGATGCTGAGTTTCTTTCCATGGACT-CCATGGAGCAGAGGAAAGGATGAGAAATGTTCCCAACTACTCT---CAAACTGCAACACATTCCTGCTAATTACATTATCTTCAAAGCTTCT-CATTTCTAAAAAGTTCAAATGTCAGAAAGCAAGTAAT----TAAAGCTTACATTATGATGCTTTTTGGTAAGTTGCTTAAAGGGGCTTTAG--------TTCTTTTTTTCTTCATCGCCAACAGATGCTCAGAGGCTTCCAACTGC---CTCTGATTCCTCCCTATGCTTCAAATACATCATT-ACACTTCCCAGCAGCTCAATTTGTGATCCGCCCTTTACTAACAC-CTCTGAAACAAGCTTGAAGCAAAGGCTCTGCACCCA-TTC-----------------------AGGTCACAAACAGG-CCTCTGG----CCCCATCCTCAGGAATCAGAC-ACTGTCTCACGGCAGAAGCAGCACTCTAGGTGAAAAAGATTTAGCCCTTGAGTTAGGCTTTTGAGAttttcttttt-ctttttttttttttATCAGACCTCCTCAAGACCCCAGGAAAATCCATTT---C-AAATCTATTCAT-TAGCAAAATATTAT----------AATCACATCATCAGAAAAATATTTTCTGTATGACTCAG--TCTA------------TC-------------------------ACCATGGAGAGAAGTGATCCTTGCTTACTTTTAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76930315 1134 + 107442819 CCCATTCACTTCTAGGAATCCTGCCGTAAGGCCCAGCCTCAAACTGAGAGCT-CTACTGCTCTGCCATAT---------------------------------------------GCCAGGGACTGGGTAGATCCTAACACTCATGG--------GTACGCCTCTCAGAGAATCAAT-----ACCTAAACCCCAATATCAGCCATTCACTGACAAC---ACACTGCCCTGACCTCTTGTCT--ATTTGGAAACCCAGGCCCAACTGCTGCCTAGGCTACAGCTAAGGCTGCCCCAGCCTTTCTTATCTTAAATGCCCCCAAGGGTCTCCACAGCCTAGTCAGTGAGCCTG-----GCCCTTGTTTCCCCATAGGTCTTCAGTGTGGTGCCAGGTCCCACTGCCTCTCCTACCCAAGCCAGCTTTGAGCTGTCTCAGCCT-----GCTCTTGGGCGGGCACATGCTGAAGTAAAACTACCCTGCAAGGTTGGCAGTGTAGAAAACACAATGCCCCCAGTATCTATCTTT--TAGCACTCTA-GGGGCTGACGAGCCT------------------TTTAGATCTGTGGGGTTGATGCTGAGTTTCTTTCCATGAACT-CCATGGAGCAGAGGAAAGGATGAGAAATGTTCCCAACTACTCT---CAAACTGCAACACATTCCTGCTAATTAGATTATCTTCAAAGCTTCT-CATTTCTAAAAAGTTCAAATGTCAGAAAGCAAGtaat----taaagcttacactatgatGCTTTTTGGTAAGTTGCTTAAAGGGgctttag--------ttctttttttcttgatcacCAACAGATGCTCAGAGGCTTCCAACTGC---CTCTGATTCCTCCCTATGCTTCAAATACATCATT-ACACTTCCCAGCAGCTCAATTTGTGATCCGCCCTTTACTAACAC-CTCTGAAACAAGCTTGAAGCAAAGGCTCTGCACCCA-TTC-----------------------AGGTCACAAACAGG-CCTCTGG----CCCCATCCTCAGGAACCAGAC-ACTGTCTCACAGCAGAAGCAGCACTCTAGGTGAAAAAGATTTAGCCCTTGAGTTAggcttttgagattttcttttttttttttttttttttatcagaccTCCTCAAGACCCCAGGAAAATCCATTT---C-AAATCTATTCAT-TAGCAAAATATTAT----------AATCAtatcatcagaaaaatattttctgtatgacTCAG--TCTA------------TC-------------------------ACCATGGAGAGAAGTGATCCTTGcttacttttaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81195210 1166 + 108555830 CCCATTCACTTCTAGGAATCCTGCCGTAAGGCCCAGCCTCAAACTGAGAGCT-CTACTGCTCTGCCATATGCAGACCCAACCTCCTTTCTGGGCTTGGGTCCACCCCACC-CCAGGCCAGGGACTGGGTAGATCCTAACACTCATGG--------GTACGCCTCTCAGAGAATCACT-----ACCTAAATCCCAATATCGGCCATTCATTGACAAC---ACACTGCCCCGACCTCTTGTCT--ATGTGGAAACCCAGGCCCAATTGCTGCCTAGGCTACAGCTAAGGCTGCCCCAGCCTTTCTTATCTTAAATGCCCCCAAGGGTCTCCATAGCCTAGTCAGTGAGCCTG-----GCCCTTGTTTCCCCATAGGTCTTCAGTGTGGTGCTGGGTCCCATTGCCTCTCCTACCCAAGCCAGCTTTGAGCTGTCTCAGCCT-----GCTCTTGGGCAGGCACATGCTGAAGTAAAACTACCCTGCAAGGTTGGCAGTGTAGAGAACACAATGCCCCCAGTATCTATCTTT--TAGCACTCTA-GGGGCTGATGAGCCT------------------TTTAGATCTGTGGGGTTGATGCTGAGTTTCTCTCCATGAACT-CCATGGAGCAGAGGAAAGGATGAGAAATGTTCCCAACTACTCT---CAAACTGCAACACATTCCTGCTAATTAGATTATCTTCAAAGCTTCT-CATTTCTAAAAAGTTCAAATGTCAGAAAGCAAGTAAT----TAAAGCTTACATTATGATGCTTTTTGGTAAGTTGCTTAAAGGGACTTTAG--------TTCTTTTTTTCTTGATCACCAACAGATGCTCAGAGGCTTCCAACTGC---CTCTGATTCCTCCCTATGCTTCAAATACATCATT-ACACTTCCCAGCAGCTCAATTTGTGATCCGCCCTTTACTAACAC-CTCTGAAACAAGCTTGAAGCAAAGGCTCTGCACCCA-TTC-----------------------AGGTCACAAACAGG-CCTCTGG----CCCCATCCTCAGGAATCAGAC-AC--TCTCACGGCAGAAGCAGCACTCTAGGTGAAAAAGATTTAGCCCCTGAGTTAGGCTTTTGAGATTTTCTTTTT----------TTTTTATCAGACCTCCTCAAGACCCCAGGAAAATCCATTT---C-AAATCTATTCAT-TAGCAAAATATTAT----------AATCACATCATCAGAAAAATATTTTCTGTATGACTCAG--TCTA------------TC-------------------------ACCATGGAGAGAAGTGATCCTTGCTTACTTTTAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111428736 1166 - 210400635 CCAATTCACTTCTAGGAATCCTGCCATAATGCCCAGCCTCAAACTGAGAGTT-CTACTGCTCTGCTATAGGCAGACCCAACCTCCTGTCTGAGTTTAGGGCCACCCCACACCCAGGCCAGGGACTGGATAGATCCTAACACTCATGG--------GTATGCCTCTCAGGGGATCACT-----ATCTGAATCCCAATATCAGCCATTCACTGACAAC---ACACTGCCCGGACCTCTTGTCT--G--TGGAAACCCAGGCCCAATTGCTGCCTAGGCTACAGCTAAGGTTGCCACAGCCTGCCTTATCTTAAACACCCAAGAGGGTCTCCACAGCCTAGTCAGTGACCCAG-----GCCCTTGTTTCTCCACAGGTCTTCAGTGTGGTGCCACGTCCCACTGCCTCTCCTACCCAAGCCAGCTTTGAGCTGTCTCAGCTT-----GCTCTCAGGCTGGCTTATGCTCAAGTAAAATGATCCTGTGAGGTTAG------------------ATCCCTAGTATCTATCTTT--CAGCA-TCTA-GGGGCTGATGAGCCT------------------TTTGGATCTGTGGGACCAATGCTGAGTTTCTCTCCATGAACTCCCATGGAGCAGAGGGAAGGATGGGAAATGCTCCCAACTATTCT---AAAATTGCAGCGCACTCCAGCTACTTAGATTATGTTCAAAGCTTCT-CATTTCTAAAAAGTTCAAATGTCAAAAAGCAAGTAATTAACAAAAACTTACATTATGATGCTTTTTAGTAAGTTGCTTAAAGGGGTTGTAGTTCTTTTCTTCTTTTTTTCTTGATC---AACAGATGCTCAGAGACTTCCAACTGC---CTCTGATTCCTCCCTGTGCTTCAAACATGTCATT-ACACTTCCCAGCAGCTCAATTTGTGATCCACCCTTTACTAACAC-CTCTGAAATAAGCTTGAAGCAAAAGCTCTGCATCCA-CCC-----------------------AGGTCAGAAACAGG-CCTCTGG----CCCCATCTTCAGGAATCAGAC-ACTGTCTCAGGGTAGAAGCAGCACTCTAGGTGAAAAAGATTTAGCCTCTGAGTTACACTTTCCTGATTTTTTTTTT--------------AATCAGACCTCCTCAGGACCCCAGGAAAATCCATTT---C-AAATATATTCAT-TAGCAAAATAAGTT----------AGTTCCATCATCAGAAAAATCTTTTCTATATGACCTAG--TCTATAGAGTCTTCTCTC-------------------------ACCATGGAGAGAAGTTGTCCTTTCTTACTTTTAA i calJac3.chr1 C 0 C 0 s mm10.chr19 38074578 1130 - 61431566 CCTGTCTACTTCTAGAAGGCCTAACTTAACGCCCAACTCCAA-------------ACTGCTGTGACATATAGAGGCCCAAGCTTCTCT------------CCATTCCACACCTAAGCCAGGGACTGCAAG------AACACTCATGGTTACTCAAAGACACTCCTCAGAAGACTAC----------GGAAGCCAACAACAACCATTCACCAATAGCTGGATGCTGCCCAGAGTTCTTAACCTAGTTTGAAAACTCCACTCCAATTACTGCCTAAACTGGAGATGAAGTTGCTGACATCGTCCTTGTCTCGAGTACCCTAAAGTATATCTGCTACTTATTCAGAG-GCCAA-----GCCACTG----------GGTCGTCA---TGAT-CCTGGCCACACT--CACTCTTCCCATAGCCAGCTTTGAACTGTCTCTGTCTCTGCCGCATTTAAGATTCCTCGTG-GGAAATAAATCTACTGTCCAAGGTTTGCATCCTTCATTGTCTACTGTGACCTGGGCTCATCTCTTGTAGTACACTGCAGGGCTGGAGAGCCT------------------TTTAG--TTACAGCACTGGCGCTTGGATCATCTCCAGGAGCT-CCAAGGAGCAGAGAAAAGGGGGTACAAACATGCCAACTGCTCTTCCCAGGCCCAAGAGCATTCCAGCTAATGAAG-----TCTAAAACACCTCCATTCCTCAGAAGCTCAAATATCAGAAAGCAAATAAT-----------TACATGATGATACTTTCTGATAAATTGTTTCAAAGGGTTTGC---------TTTTGTTTCTTTTTCCTACCAACTGATGCTCAGTGGCTTGCATCTGCGTGCCTCAGTTCCTCCCTAAGCCTCCATCATGCCATTAACATGCCCCAGATACTCAATTTTTTATCTTCCCTTGAACCAAAC-GTCTCAAACATTCTGTGAACAAGGACTTTGCCCCCACCTC-----------------------AGATGCTGGGTAGC-TATTTGAAGGTCCCCATCTTTAGCTTCCAGATAACTGTCT-----------GAATATTCTACATAAAGTAGATTTAGTCTATGATCTCCACTCTTAAAA----CTTTCT---------------ATCAGACC---------------ATAGAATCATTTAGAT-AGATAGAATAAA-TAGAATAATATCACTTAGATATTAGATAGAATCATC----AAATCATTTC--TAAGACCAAGTATTTA------------TCAAGTGAAGAAAATAACAACCAGAAAACCATGGATAAGAGAGACCTGTGCTTA-----AA i mm10.chr19 I 1258 C 0 s canFam3.chr1 35316746 1186 - 122678785 ----TCCACTTATAGGGATGCCGTCTTAATGCTCTGCCCCAAAGTGAGAACTCCCACTGCTCTGCCATATATAGGCCCAATCTCCTCTCGGGGCTTGGGTCCACCCTAGCCCCATGCCAGGGACTGGAAGGGTCTTGACACTCGTGG--------ATATAACCCTCAAAGATGTCTTCCTGGGCCTAAATGCCATTTATGCCCATTTGCCAACAAC---ACACTGCCCT--TTTGATATCT--GATTAGAAACCTGGCTCTGGTCGTTGCCTTGGTTACAGCTGTAGTGGC----------CTTAGCTCAGA---CCTCAAGCATCTCCACAGCCTGGTCAGTGGCCCAGCCCCAGCCCCTGCTCCATCAAGATTCCTCAGTCTGGTGCCAGGTCCTACTCACACTGTCTCCC-AGCCAACTTCGAGCTGTCTCAGCCT-----GCTTTCGGGCTGGCTCGGGCTAAAATAAAACTCCTGTGGCAGGTTAGCAGCCTACAGAGCACGCTGTACCCAG-----ATCTCC-AGAGCGCTGCA-GGGGCTGAGGATCCCAAAGCCTGCTGATGAGCGTTTACAGTTCTCAGGCTGGTACGGAGTCCATCTCCATGAACC-TC--------------AGGGTGGGAAATGCTGCCAAAGATTCTTCTCCAACAGCAGCACCCTTCACCTGATTAGAGGATCTTCAGAACCTCT-CATTTCCAAAAAGCTCAAGTGTCAGAGAGCAAGTAATTAACTACATCTTACATTGTGATGCTTTTTGGCACCTTGCTCAAAGGGCCTTCTTCCTTTTTTTTTTTTTTTCTTTTCTGATCGACTGATGTTCAAGGGCTTCCAACTGC---CTCTGATTCCTCCGTATGCTTCAAAGGGGTCATT-AT----------CGCTCAA-CTGTCATGGCCACTTGGCCCATATGCTCTGAAACCAGCCTTAAGCAAAAGCTTTCCACCCA-CCCCAGATCTCTGGCGTGCTCATTTTAGGTCACAAATAGGCCCTCTGG----CCCCCTCTTCAGGAATTAGAT-GCGGTCTCATAGCAGAAGCGGTGTTCAGGGTGGAAGAGATTTAGGCTTTCAGTTATGCTTTTGAGATTTTCTTTTT---------------ATCAGGCCTCCTCAGGACCCCAGACAAATCCATTT---CTAGGGCTAGGTATTTAGCAAAGGAATAA----------AATCATGTTCTCAGAAACATCTTTCCTGAGTGTCTCAG--TTTG------------TC-------------------------ACCATGGAGAGAACTGATCTGTGCTTACTTTCAA i canFam3.chr1 C 0 C 0 a score=651700.000000 s hg38.chr9_GL383541v1_alt 111510 213 + 171286 GCTttttttgataggca-tta-ttttttagt----gtagttttaggttcacagcaaaattgagaggaagatacagaggtctctcatagtccctgtgccttcatatacatcactgt-ccccagagtccatagtttagattaaggttcactcgtggtattgtatactgtatggatttggacaaatgtataatgacatgtatc---caccattgtagtatcatac-----a s panTro4.chr9 68676931 213 + 137840987 GCTttttttgataggca-tta-ttttttagt----gtagttttaggttcacagcaaaattgagaggaagatacagaggtctctcatagtccctgtgccttcatatacatcactgt-ccccagagtccatagtttagattaaggttcactcgtggtattgtatactgtatggatttggacaaatgtataatgacatgtatc---caccattgtagtatcatac-----a i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64832849 221 + 135191526 G-Tttttttgataggca-ttatttttttagt----gtagttttaggttcacagcaaaattgagaggaagatacagaggtctctcatagtccccgtgccttcatatgcatcactgt-ccccaaagtccatagtttacattaaggttcactcatggtattgtatactctatggatttggacaaatgtataatgacatgtatccctcaacgttgtagtatcatacagaata i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57868862 221 - 122973662 G-Tttttttgataggca-ttt-ttttttttttttagtagttttacgttcacagcaaaattgagaggaaggtacggagatctctcatagtccccatgcctgcatatacatcactgt-ctccagagtccatagtttacattagggttcactcggggtattgtatactctatggatttggacaaatgtataatgacgtgtatc---taccattgtagtaccatacagaata i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79802392 217 + 112192347 G-Tttttttgataggca--tt-ttttttagt----gttgttttaggttcacagcaaaattgagaggaaggtacagaggtctctcatagtccccttgtcttcatatacattactgtcccccagagtccacagtttacattaaggttcactcgtggtattgtatactctatggatgtagacaaatgtataatgatatgtatc---caccattgtagtatcatacagaata i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80882396 219 + 112612857 G-Tttttttgataggcatttt-ttttttagt----gtcgttttaggttcacagcaaaattgagaggaaggtacagaggtctctcatagtccccttgtcttcatatacattactgtcccccagagtccacagtttacattaaggttcactcgtggtattgtatactctatggatgtagacaaatgtataatgatatgtatc---caccattgtagtatcatacagaata i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76931449 218 + 107442819 g-tttttttgataggca-ttt-ttttttagt----gtcgttttaggttcacagcaaaattgagaggaaggtacagaggtCTCTCATAGTCCCCTTGTCTTCATATACATTACTGTCCCCcagagtccacagtttacattaaggttcactcgTGGTATTGTATACTCTATGGAtttagacaaatgtataatgatatgtatc---caccattgtagtatcatacagaata i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81196376 218 + 108555830 G-Tttttttgataggca-ttt-ttttttagt----gtcgttttaggttcacagcaaaattgagaggaaggtacacaggtctctcatagtccccttgtcttcatatacattactgtcccccagagtccatagtttacattaaggttcactcgtggtattgtatactctatggatttagacaaatgtataatgatatgtatc---caccattgtagtatcatacagaata i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111429902 215 - 210400635 G-TTGTTTTGATGAGCA-tta-ttttttagt----gtagttttaggttcacagcaaaattgagaggaaggtacagaggtctttcatagtccccttgcctccatatac---actgtcccccagagtccatagtttacattacgattcactcgtggtgttgtatactctatggatttggacaaatgtataatgacatgtatc---tatcaatgtaatatcatacagaata i calJac3.chr1 C 0 C 0 s mm10.chr19 38075708 198 - 61431566 G-TT------------G-TGT-TTTATTAGG----GCAGTTTGAGGTT--CAGCCAAATGGTCA-GAAGTCACAGCAGTAACACATATAATCTTTCCCCCCATacatattactatcactcagactccagagtttccattaaaggtcactgatggtattgcatgttctataggagtgaacacatttgtactgacacatgcc---caccattacagtggaataca----- i mm10.chr19 C 0 I 2 e canFam3.chr1 35317932 0 - 122678785 C a score=34848.000000 s hg38.chr9_GL383541v1_alt 111723 13 + 171286 ttttcattgccc-t s panTro4.chr9 68677144 13 + 137840987 ttttcgttgccc-t i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64833070 14 + 135191526 ttttcattgccctt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57869083 13 - 122973662 ttttcattgtgc-t i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79802609 13 + 112192347 ttttcattgccc-t i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80882615 13 + 112612857 ttttcattgccc-t i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76931667 13 + 107442819 ttttcattgccT-T i papAnu2.chr15 C 0 I 299 s chlSab2.chr12 81196594 13 + 108555830 ttttcattgccc-t i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111430117 13 - 210400635 ttttcattaccc-t i calJac3.chr1 C 0 C 0 e mm10.chr19 38075906 2 - 61431566 I e canFam3.chr1 35317932 0 - 122678785 C a score=1007612.000000 s hg38.chr9_GL383541v1_alt 111736 343 + 171286 aaaaaccccctctatatccaggccaggcatggtagtgcacacctgtaatcccagcactttgggaggcaaaggagggtggattgcttgagcctaggagttgtagaccagcctgggcaacatggtgaaaccctgtctctac--------aaaaaatac-aaaaattagccaggcatggtggtgcatgcctatggtcccagcttcttaggaggctaaaggaggaggataggttgaacccaggaggcagaggctacagtgagccaagattgcaccagtgcactccagcctggaccacaaagtgggaccctttctc-aaaaacaaa-----aagcaaacaaaaaactctctatgttttgccta s panTro4.chr9 68677157 343 + 137840987 aaaaaccccctctatatccaggccaggcatggtagtgcacacctgtaatcccagcactttgggaggcaaaggagggtggattgcttgagcccaggagttgtagacaagcctgggcaacatggtgaaacactgtctctac--------aaaaaatac-aaaaattagccaggcatggtggtgcatgcctatggtcccagcttcttaggaggctaaagaaggaggataggttgaacccaggaggcagaggctacagtgagccaagattgcaccagtgcactccagcctgggccccaaagtgggaccctgtctc-aaaaacaaa-----aagcaaacaaaaaactctctatgttttgccta i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64833084 340 + 135191526 aaaaaccccctctatattcaggccaggcatggtggtgcacacctgtaatcccagcactttgggaggcaaaggagggtggattgcttgagcccaggagttgtagaccagcctgggcaacatggtgaaaccctgtctgtac--------aaaaaatac-aaaaattagccaggcatggtggtgcatgcctatggtcccagcttcttaggaggctaaaga---aggataggttgaacccaggaggtagaggctacagtgagccaagattgcacctgtgcactccagcctgggccacaaagtgggaccctgtctc-aaaaacaaa-----aagcaaacaaaaaactctctatgttttgccta i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57869096 343 - 122973662 aaaaaccccctctatattcaggccaggcatggtggtgcatacctgtaatcccagcactttgggaggcaaaggagggtggattgcctgagtccaggagttgtagaccatcctgggcaacacagtgaaaccctgtctctac--------aaaaaatgc-aaaaattagccaggcatggtggtgcatgcctatggtcccagcttcttaggaggctaaagaaggaggataggttgaacccaggaggtagaggctacagtgagccaagattgcaccactgcacttcagtctgggccacaaagtgggactgtgtctc-aaaaacaaa-----aaacaaacaaaaaactctttatgttttgccta i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79802622 339 + 112192347 aaaaaccccctctatattcaggccaggcatgctggtgcacacctgtaatcccagcactttgggaggcaaaggagggtggattgcttgagcccaggagttggagaccagcctgggcaacatggtgaaaccctgtctctac------aaaaaaaatac-aaaaattagccaggcatggtggtgcatgcctatggtctcagcttcttaggaggctaaagaaggaggataggttgaactcaggagatagaggctacagtgagccaagattgcaccactgcactccagcctgggccacaaagtggtaccctgtctc-aaaaacaaa-----aaacaaacaaaa------ctctgttttgccta i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80882628 339 + 112612857 aaaaaccccctctatattcaggccaggcatgctggtgcacacctgtaatcccagcactttgggaggcaaaggagggtggattgcttgagcccaggagttggagaccagcctgggcaacatggtgaaaccctgtctctac------aaaaaaaatac-aaaaattagccaggcatggtggtgcatgcctatggtctcagcttcttaggaggctaaagaaggaggataggttgaactcaggagatagaggctacagtgagccaagattgcaccactgcactccagcctgggccacaaagtgggaccctgtctc-aaaaacaaa-----aaacaaacaaaa------ctctgttttgccta i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76931979 338 + 107442819 aaaaaccccctctatattcaggccaggcatgctggtgcacacctgtaatcccagcactttgggaggcaaaggagggtggattgcttgagcccaggagttggaaaccagcctgggcaacatggtgaaaccctgtctctac-------aaaaaaatac-aaaaattagccaggcatggtggtgcatgcctatggtctcAACTTCTTAGGAGGCTAAAGAAGGAGGATaggttgaactcaggaggtagaggctacagtgagccaagattgcaccactgcactccagcctgggccgcaaagtgggaccctgtctc-aaaaacaaa-----aaacaaacaaaa------ctctgttTTGCCTA i papAnu2.chr15 I 299 C 0 s chlSab2.chr12 81196607 335 + 108555830 aaaaaccccctctatattcaggccaggcatgctggtgcacacctgtaatcccagcactttgggaggcaaaggagggtggattgcttgagcccaggagttggagactagcctgggcaacatggtgaaaccctgtctctac--------aaaaaatac-aaaaattagccagggatggtggtgcatgcctgtggtcccagcttcttaggaggctaaagaaggaggataggttgaacccaggaggtagaggctacagtgagccaagattgcaccactgcactccagcctgggccacaaagtgggaccctgtctc-aaaaacaaa-----aaacaa--aaaa------ctctgttttgccta i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111430130 357 - 210400635 aaaagacccctctatattcaggtcaggagtggtggcacacacctgtaatcccagcatttggggaggcaacggagggtggattgcttgagcccaggagttggagaccagcctgggcagcatgataaaaccctgtctctattaaaaaaaaaaaaatacaaaaaattagccaggcatcgtggtgaatgcctatggttccagctactcaggaggctaaagtgggagtataggttaaacccagaaggtagaggctacagtgagccaagcttgtaccactgcactccagcctgggccacaaaatgagaccctatctcaaaaaacaaacgaacaaacaaacaaaa-accatgtatgttttctcta i calJac3.chr1 C 0 C 0 e mm10.chr19 38075906 2 - 61431566 I e canFam3.chr1 35317932 0 - 122678785 C a score=1074138.000000 s hg38.chr9_GL383541v1_alt 112079 317 + 171286 ttcacctctccttcccccaaacccgtggcaattactgttctttttactgtccccatagttttgccttttcaagaatgtcacatagt--tggaatcatagagtatgtagccttttcagactggcttcctgcactttgtaatatgt--------------atttaagtttactccgtatcattttgcggcttgatagctcatttcttctt-agcgctgagtgatatttagttgtc----tggatgtaccacagtttatgtatctactcacctactgaaggacatagcttggttgctttcaagttttggtgcttatgaataaaacttctgtaaactttcac s panTro4.chr9 68677500 317 + 137840987 ttcacctctccttcccccaaacccgtggcaattactgttctttttactgtccccatagttttgccttttaaagaatgtcacatagt--tggaatcatagagtatgtagccttttcagactggcttcctgcactttgtaatatgt--------------atttaagtttactccgtatcatttcgcggcttgatagctcatttcttctt-agcgctgagtgatatttagttgtc----tggatgtaccacagtttatgtatctactcacctactgaaggacatagcttggttgctttcaagttttggtgcttatgaataaaacttctgtaaactttcac i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64833424 317 + 135191526 ttcacctctccttccccccaacccgtggcaattactgttctttttactgtccccatagttttgccttttcaagaatgtcatatagt--tggaatcatagagtgtgtagccttttcagactggcttcctgcactttgtaatatgt--------------atttaagttttctccgtatcatttcgcggcttgatagctcatttcctctt-agcgctgagtgatatttagttgtc----tggatgtaccacagtttatgtatccactcacctactgaaggacatagcttggttgctttcaagttttggtgcttatgaataaaacttctgtaaactttcac i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57869439 317 - 122973662 tttacctctccttccccccaacccatggcaattactgttctttttactgtccccatagttttgccttttcaagaatgtcatatagt--cagaatcatagagtatgtagtcttttcagattggcttcctgcactttgtaatatgt--------------atttaagtttactccgtatcattttgtggcttgatagctcatttcttctt-agcgctgagtgatatttagttgtc----tggatgtactacagtttatgtatccactcacctactgaaggacatagcttggttgctttcaagttttggtgcttatgaataaaacttctgtaaactttcac i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79802961 317 + 112192347 ttcacctctccttccccccaacctgtggcagttactgttctttttactgtccccatagttttgcctgttcaagaatgtcatatagt--tggaatcatagagtatgtagccttttcagactggcttccttcactttgtaatatgt--------------atttaagtttactctgtatcatttcatggcttgatagctcatttcttcta-agcgctgagtgatatttagttgtc----tggatgtaccacagtttatatatccactcacctactgaaggacataacttggttgctttcaagttttggtgcttatgaataaaacttctgtaaactttcac i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80882967 317 + 112612857 ttcacctctccttccccccaacctgtggcagttactgttctttttactgtccccatagttttgcctgttcaagaatgtcatatagt--tggaatcatagagtatgtagccttttcagactggcttccttcactttgtaatatgt--------------atttaagtttactctgtatcatttcatggcttgatagctcatttcttcta-agcgctgagtgatatttagttgtc----tggatgtaccacagtttatatatccactcacctactgaaggacataacttggttgctttcaagttttggtgcttatgaataaaacttctgtaaactttcac i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76932317 317 + 107442819 TTCACCTCTCCTTCCCCCCAACCTGTGGCAGTTACTGTTCTTTTTACTGTCCCCATAGTTTTGCCTGTtcaagaatgtcatatagt--tggaatcatagagtatgtagccttttcatattggcttccttcactttgtaatatgt--------------atttaagtttACTCTGTATcatttcatggcttgatagctcatttcttcta-CGCGCTGAGTGATATTTagttgtc----tggatgtaccacagtttatatatccactcacctactgaaggacataacttggttgctttcaagttttggtGCTTATGAATAAAACTTCTGTAAACTTTCAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81196942 317 + 108555830 ttcacctctccttccccccaacctgtggcagttactgttctttttactgtccccatagttttgcctgttcaagaatatcatatagt--tggaatcatagagtatgtagccttttcagactggcttccttcactttgtaatatgt--------------atttaagtttattctgtatcatttcatggcttgatagctcatttcttcta-agcgctgagtgatatttagttgtc----tggatgtaccacagtttatgtatccactcacctactgaaggacataacttggttgctttcaagttttggtgcttatgaataaaacttctgtaaactttcac i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111430487 313 - 210400635 ttcacccctccttccctgtaacccatgacaactactgatctttttactggcaccatagttttgccttttcaagaatgtcatatagt--tggaatcatatagtatgtagccttttcagactggcttccttcacttcgtagtacgt--------------atttaagtttactctgtatcatttcgcagc----tagctcattccttctt-agcactgagcgatatttagttgtc----tggatgtaccacagtttatgtatccattcacctactgaaggacatagcttggttgctttcatgttttggtgcttatgaataaaacttctataaaattccac i calJac3.chr1 C 0 C 0 s mm10.chr19 38075908 336 - 61431566 ttcaccctccccccacccctgcccttg-caaccactggcctttttcttgtctccctgattttgcctttcccatcatgccttatggttgtggagtcatgcagtaggcagtgttctcatactggctcccttcactgagcagaatttatgcagtattgcagatttctgtttcctcccggttattttgtggctccatagatcatttctttttaagcactgagtaatatttcattatcaaaataaatacaccacagctcacatgccttttcaccaactgaagaccaccaa-tggtcgagtctccatttcagctactctgaataaagctgctataaaTTTTTGA i mm10.chr19 I 2 C 0 e canFam3.chr1 35317932 0 - 122678785 C a score=2218295.000000 s hg38.chr9_GL383541v1_alt 112396 636 + 171286 gtttttatgCCACCTTCCACCCCCTCCCACACATCTAATAACTGAGTTAAGATTCTCTTGCAGTCGCCCAAGAGCACTGCTTTAAGATTCATTTCTTCTTCTCCCCTCTCTAGCTGGGACAAAGAATGAAAAAAAAGGAGGA-------AGGGGGAAGATTCATTCCTGATGAG-GAATTCACTGACCTACTGTT---TTCGTGCATGGCACTTGGCAGTGCCACCCCATTTCCTGAGTTAGATGGCCCTCTGTAGATTTGGGATTTTTATTTGTTTTT----TTATTACCCAGTAGCAGAGGGGTGACTAATACTGAATACTTTAATGGGGTTTCCTGTGGTCTCAAATATCCATGGGAG----AATGTCAAAGGATCCTTGTTCATGTAACATCTTGTTCATTTTTCACAGACTTTATCTTC-AGGGCTTAAAGATATACCCTGGTGCTGACAGAATCAGGCAGACCAGGGTGTGGGCTAATCTACCCATCTTAGAGCATTGAGAATTCTCTTCATTTCCTCTTCTCCAGTCTGGCTCATCTGGGTTTGCTCCTGGTGCACTTCCTAGGGTATATCCCCTGAGATACAATCAGGTTCTAGTTATATAGGAACACTTTTTACCTA-----ATCTTTTTTTTTGTAATGTGTTGTTAATCA s panTro4.chr9 68677817 635 + 137840987 gtTTTTATGCCACCTTCCACCCCCTCCCACACATCTAATAACTGAGTTAAGATTCTCTTGCAGTCGCCCAAGAGCACTGCTTTAAGATTCATTTCTTCTTCTCCCCTCTCTAGCTGGGACAAAGAATGAAAAAAAAGGAGGA-------AGGGGGAAGATTCATTCCTGATGAG-GAATTCACTGACCTACTGTT---TTCGTGCATGGCACTTGGCAGTGCCACCCCATTTCCTGAGTTAGACAGCCATCTGTAGATTTGGGATTTTTATTTGTTTTT----TTATTACCCAGCAGCAGAGGGGTGACTAATACTGAATACTTTAATGGGGTTTCCTGTGGTCTCAAATATCCATGGGAG----AATGTCAAAGGATCCTTGTTCATGTAACATCTTGTTCATTTTTCACAGACTTTATCTTC-AGGGCTTAAAGATATACCCTGGTGCTGACAGAATCAGGCAGACCAGGGTGTGGGCTAATCTACCCATCTTAGAGCATTGAGAATTCTCTTCATTTCCTCTTCTCCAGTCTGGCTTATCTGGGTTTGCTCCTGGTGCACTTCCTAGGGCATATCCCCTGAGATACAATCAGGTTCTAGTTATATAGGAACACTTTTTACCTA-----AT-TTTTTTTTTGTAATGTGTTGTTAATCA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64833741 633 + 135191526 gtTTTTATGCCACCTTCCACCCCCTCCCACACATCTAATAACTGAGTTAAGATTCTCTTGCAGTCGCCCAAGAGCACTGCTTTAAGATTCATTCCTTCTTCTACCCTCTCTAGCTGGGACAAAGAATGAAAAAAAAGGAGGA-------AGGGGGAAGATTCATTCCTGATGAT-GAATTCACTGACCTACTGTTCTCTTCGTGCATGGCACTTGGCAGTGCCACCCCATTTCCTGAGTTAGATGGCCATCCATAGATTTGGGATTTTTATTTG----T----TTATTACCCAGTAGCAGAGGGGTGACTAATACTGAATGCTTTAATGGGGTTTCCTGTGGTCTCAAATATCCATGAGAG----AATGTCAAAGGATCCTTCTTCGTGTAACATCTTATTCATTTTTCACAGACTTTATCTTC-GGGGCTTAAAG--ATACCCTGGTGCTGACAGAATCAGGCAGACCAGGGTGTGGGCTAATCTACCCATCTTAGAGCATTGAGAATTCTCTTCATTTCTTCTTCTCCAGTCTGGCTCATCTGGGTTTGCTCCTGGTGCACTTCCTAGGGCATATCCCCTGAGATACAATCAGGTTCTAGTTATATAGGAACACTTTTTACCTG-----ATCTTTTTTTTTGTAATGTGTTGTTAATCA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57869756 639 - 122973662 gtTTTTATGCCACCTTCCACCCCCTCCCACACATCTAATAACTAAGTTAAGATTCTCTTGCAGTCGCCCAAGAGCACTGCTTTAAGATTCATTCCTTCTTCTACCCTCTCTAGCTGGGACAAAGAATGAAAAGAAAGGAGGA-------AGGGAGAGGATTCATTCCTGATGAG-GAATTCACTGACGTACTGTTCTCTTCGTGCATGGCACTTAGCAGTGCCACCCCATTTCCTGAGTTAGATGGCCATCTGTAGATTTGGGATTTTTATTTTTATTT----TTATTACCCAGTAGCAGAGGGGTGACTAATACTGAATACTTTAATGGGGTTTCCTGTGGTCTCAAATATCTATGGGAG----AATGTCAAAGGATCCGTGTTTATGTAACATCTTGCTCATTTTTCACAGACATTATCTTC-AGGGCTTAAAGATATACCCCAGTGCTGACAGAATCAGGCAGACCAGGGTGTGGGCTAATCTACCCATCTTAGAGCATTGAGAATTCTCTTCATTTCCTCTTCTCCGGTCTGGCTCATCTGGGTTTGCTCCTGGTGCACTTCCTAGGGCATATCCCCTGAGATACAATCAGGTTCTAGTTATATAGGAACACTTTTTACCTA-----ATCTTTTTTTTTGTAATGTGTTGTTAATCA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79803278 640 + 112192347 gtTTTCATGCCACCTTCCACCCCCTCCCACACATCTAATGACTGAGTTAAGATTCTCTTGCAGTTGCCCAAGAGCACTGCTTTAAGATTCATTCCTTCTTCTACCCTCTCTAGCTGGGAGAAAGAATGAAAAAAAAAAAGGAGGCTGTGAGGGGGAAGATTCATTCCTGATGAG-GA----AATGACCTACTCTTCTCTTCGTGTATGGCACTTGGCAGTGCCACCCCATTTCCTGAGTTAGATGGCCATCTGTAGATTTGGGACTTTTATTTGTTTTT----TTATTACCCAGTAGCAGAGGGGTGACTAATACTGAATACTTTCATGGGGTTTCCTGTGGTCTCACATATCCATGGGAG----AATGTCAAAGGATCCTTGTTTGTGTAACATCTTGTTCATTTTTCACAGACTTTATCTTC-AGGGCTTAAAGATATACCCTGGTGCTGACAGAATCAGGCAGACCAGGCTGTGGGCTAATCTACCCATCTTAGAGCATTGAGAATTCTCTTCATTTCCTCTTCTCCAATCTGGCTCATCTGGATTTGCTCCTGGTGCACTTCCTAGGGCATATCCCCTGAGATACAATCAGGTTCTAGTTATATAGGAACACTTTTTACCTA-------TTTTTTTTTTGTAATGTGTTGTTAATCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80883284 639 + 112612857 gtTTTCATGCCACCTTCCACCCCCTCCCACACATCTAATAACTGAGTTAAGATTCTCTTGCAGTTGCCCAAGAGCACTGCTTTAAGATTCATTCCTTCTtctaccctctctagctgggagaaagaatgaaaaaaaaaaaggaggctgtgagggggaagattcattcctgatgag-ga----actgacctactcttctcttcgtgtatggcacttggcagtgccaccccatttcctgaGTTAGATGGCCATCTGTAGATTTGGGACTTTTATTTGTTTTT----TTATTACCCAGTAGCAGAGGGGTGACTAATACTGAATACTTTCATGGGGTTTCCTGTGGTCTCACATATCCATGGGAG----AATGTCAAAGGATCCTTGTTTGTGTAACATCTTGTTCATTTTTCACAGACTTTATCTTC-AGGGCTTAAAGATATACCCTGGTGCTGACAGAATCAGGCAGACCAGGCTGTGGGCTAATCTACCCATCTTAGAGCATTGAGAATTCTCTTCATTTCCTCTTCTCCAATCTGGCTCATCTGGATTTGCTCCTGGTGCACTTCCTAGGGCATATCCCCTGAGATACAATCAGGTTCTAGTTATATAGGAACACTTTTTACCTA--------TTTTTTTTTGTAATGTGTTGTTAATCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76932634 641 + 107442819 GTTTTTATGCCACCTTCCACCCCCTCCCACACATCTAATAACTGAGTTAAGATTCTCTTGCAGTTGCCCAAGAGCACTGCTTTAAGATTCATTCCTTCTTCTACCCTCTCTAGCtgggagaaagaatg-aagaaaaaaaggagactgTGAGGGGGAAGATTCATTCCTGATGAG-GA----ACTGACCTACTCTTCTCTTCGTGCATGGCACTTGGCAGTGCCACCCCATTTCCTGAGTTAGATGGCCATCTGTAGATTTGggacttttatttgttttt----ttattaccCAGTAGCAGAGGGGTGACTAATACTGAATACTTTAATGGGGTTTCCTGTGGTCTCAAATATCCATGGGAG----AATGTCAAAGGATCCTTGTTTGTGTAACATCTTGTTCATTTTTCACAGACTTTATCTTC-AGGGCTTAAAGATATACCCTGGTGCTGACAGAATTAGGCAGACCAGGGTGTGGGCTAATCTACCCATCTTAGAGCATTGAGAAttctcttcatttcctcttctccAGTCTGGCTCATCTGGATTTGCTCCTGGTGCACTTCCTAGGGCATATCCCCTGAGATACAATCAGGTTCTAGTTATATAGGAACActttttaccta-----atttttttttttgtaatgtgttGTTAatca i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81197259 639 + 108555830 gtTTTTATGCCACCTTCCACCCCCTCCCACACATCTAATAACTGAGTTAAGATTCTCTTGCAGTTGCCCGAGAGCACTGCTTTAAGATTCATTCCTTCTTCTACCCTCTCCATCTGGGAGAAAGAATG-AAAAAAAAAAGGAGGCTGTGAGGGGGAAGATTCATTCCTGATGAG-GA----ACTGACCTACTCTTCTCTT-GTGCATGGCACTTGGCAGTGCCACCCCATTTCCTGAGTTAGATGGCCATCTGTAGATTTGGGACTTTTATTTGTTTTT----TTATTACCCAGTAGCAGAGGGGTGACTAATACTGAATACTTTAATAGGGTTTCCTGTGGTCTCAAATATCCATGGGAG----AATGTCAAAGGATTCTTGTTTGTGTAACATCTTGTTCATTTTTCACAGACTTTATCTTC-AGGGCTTAAAGATATACCCTGGTGCTGACAGAATCAGGCAGACCAGGGTGTGGGCTAATCTACCCATCTTAGAGCATTGAGAATTCTCTTCATTTCCTCTTCTCCAGTCTGGCTCATCTGGATTTGCTCCTGGTGCACTTCCTAGGGCATATCCCCTGAGATACAATCAGGTTCTAGTTATATAGGAACACTTTTTACCTA------ATTTTTTTTTTGTAATGTGTTGTTAATCA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111430800 647 - 210400635 atttttatgCCA-CTTCCACCCCCTTCCACACACCTAATAACTGAGTTAAGATTGTCTTGCAGTCACCAAAGGGCACTGCTTTAAGATTCATTGCTCCTTCTACCCTCTCTAGCTGGGAGAAAGAA--AAAGAAAAGGAGGG--GTGTTGGGGGGAAGATTGATTCCTGATGAG-GAATTCGCTGAC---CTGTTCTCTTCGTGCATGGCACTTGGCAGTGCCACCCCATTTCCTGAGTTAGATGGCCATCTGTAGATTTGAGATTTTCATTTTTTTTTTTTATTATTGCCCAGTAGCAGAGGCATGACTCATACTGAAGACCTTAATGGGGTTTCCTGTGGTCTCAAATCTCCATGGGAG----AATGTCAAAGGATCCTTGTTTGTATAACATCCTGTTTATTTTTCACAGACTTTATCTTC-CAGGCTTAAAGATATACCCTGGTGCTGACAGAATCAGGCAGAGCAGGGTGTGAGCTAATCCACCAGTCTTAGAGCATTGAGAATTCTCTTCATTTCCTCTTCTCCAGTCTGGCTCATCTGGGTTTGCTCCTGGTGCGCTTCCTAGGGCATATTGCCTGAGATACAATCAGGTTCTAGTTACATAATAACATTTTCTTCCTATTCTTCTTTTTTGTTTTGTAATGTGGTGTTAATCA i calJac3.chr1 C 0 C 0 s mm10.chr19 38076244 522 - 61431566 ATTCCAGTACTACTG-----CCCCCTCTAGAGACCTAAAAAGGGGGTTAAGATTCTCTTGCAGCCACTTAGGGGTGTTTCTCTAAGGTTCGT-----------------------------------------------------------------GAGTGATTTT--------------GCTGACCTGATCATCAGTGTATGCCAGGTATTTAAGAGTACCTCGCCATCTTCTAAGCTACGCAGCTGGCTGTACATTTT-GACTTTTTCATG-TTTT----TCATTATTAGGTAGGAGGAGGTTGGCTAAGAATTGAAA---TAGTGGAGTTTCTTCTGCTCTCCATTGTCAGTGGGGA----AATGCTGAAGAGTCCTGGTGTGTGTGACATCATATTAATTTTTCTCAGGCTTTGTCTCCTTGGACATAACAATATACCCTCGTTCTGGCAGAAATGGGCGGAGCAGCATGTGGG-TGACTCACCAGGCTTAGAGCACTGCAG----TCCTTATTTC--CTTCTCCA--CTAGCAAGCTTGGGCTTG--------------------------TGACTGACATGCGACCATGTTCCAGTTACATGGGAACGGTTTCTTCTTA-------TTCTCTTTCTATAACGCACGGTTAGTCA i mm10.chr19 C 0 I 40 s canFam3.chr1 35317932 571 - 122678785 GTTTTAATACCACCTCTCA-CCTCTCCTGCACACATAGTAAATGGGTTATGGTTCTCTTGTGGCTGCCCGGGGG---------AATATTC-----------------------CTGGG---------------------------------------GATGTATTCCCAATGAGTGATTTTACTGACCTGCCGTTCTCTGTGTGCCTGGCTTTTGGGAGTGCCATACCATTTTCTGGGCCAGACAGCTATCAATGG----TGCATTTTCAACTACTTTT----TCATTACCAGGTAGCA-AGGGGTAACTAAGACTGGAGACCAATATAGGGTTTCCCTTGGTTGTAGATCTGCATAGGGAGGCTGGTGTCAAAGGAGACTCATGTGAATGACATCATCCTCATTTTTCAAAGACTTTATCTTC-GTGGCTTAAAGATACTCCCTGATGCTCACAGAGCCAGGCCCAGCAATGCGTGGGCCAACCCACCAGTCTTAAAGCATTGAGAATGCTCTACGTTTCCTTTTCTCCTCTCTGGTTCCTCAGGGTGCTCACTTTGCACACTTGCTAGGGCATGTCACCTAACATACAATCGGAATCCAATTATGTAGGAATATTTTGTTCCTA-------TTCTTTTTTTCTAATGTGGTGGTGATC- i canFam3.chr1 C 0 C 0 a score=122521.000000 s hg38.chr9_GL383541v1_alt 113032 45 + 171286 GTTACTTTTTAAAATTT-----------------------------------------------------------------------------AATTTTCTTGGAGCtctttaattttcta s panTro4.chr9 68678452 45 + 137840987 GTTACTTTTTAAAATTT-----------------------------------------------------------------------------AATTTTCTTGGAGCTCTTTAATTTTCTa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64834374 45 + 135191526 GTTACTTTTTAAAATTT-----------------------------------------------------------------------------AATTTTCTTGGAGctctttaattttcta i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57870395 45 - 122973662 GTTACCTTTTAAAATTT-----------------------------------------------------------------------------AATTTTCTTGGAGCTCTTTAATTTTCTa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79803918 45 + 112192347 GTTACTTTTTAAAATTT-----------------------------------------------------------------------------AATTTTCTTGGAGCtctttaattttcta i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80883923 45 + 112612857 GTTACTTTTTAAAATTT-----------------------------------------------------------------------------AATtttcttggagctctttaattttcta i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76933275 45 + 107442819 gttactttttaaaattt-----------------------------------------------------------------------------aattttcttggaGCTCTTTAATCTTCTA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81197898 45 + 108555830 GTTACTTTTTAAAATTT-----------------------------------------------------------------------------AATTTTCTTGGAGCTCTTTAATTTTCTa i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111431447 122 - 210400635 GTTACTTTTTAAAATTTAATTGTCTTGGAttcttcttttttttctttttttttttttttGTAAGGTGCTTTTAATCAGTTACTTTTTAAAATTCAATTTTCTTGAAACGCTTTAATTTTCTA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35318503 34 - 122678785 ---ACTTTTTA-----------------------------------------------------------------------------------CATGCTTTTAAAA--Ctttatttatatg i canFam3.chr1 C 0 C 0 e mm10.chr19 38076766 40 - 61431566 I a score=153132.000000 s hg38.chr9_GL383541v1_alt 113077 40 + 171286 tcatttcaaactcagacaaaatctgcaggaaaactacaaa s panTro4.chr9 68678497 40 + 137840987 tcatttcaaactcagacaaaatctgcaggaaaactacaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64834419 40 + 135191526 tcatttcaaactcagacaaaatctgcaggaaaactacaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57870440 40 - 122973662 tcatttcaaactcagataaaatttgcaggaaaactacaaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79803963 40 + 112192347 tcatttcaaactcggacataatttgcaggaaaactacaaa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80883968 40 + 112612857 tcatttcaaactcggacataatttgcaggaaaactacaaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76933320 40 + 107442819 TCATTTCAAACTTGGACATAATTTGCAGGAAAACTACAAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81197943 40 + 108555830 tcatttcaaactcggacataatttgcaggaaaactacaaa i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111431569 40 - 210400635 TTATTTCGAAGTCAGACAAAGTTTGCAAGAACACTGCAAT i calJac3.chr1 C 0 I 167 s mm10.chr19 38076806 40 - 61431566 TCTTTTCAAACTCAGATAAAATTTGCTAGAATATGGGATT i mm10.chr19 I 40 I 8 s canFam3.chr1 35318537 40 - 122678785 tcattttaaactcagccaaaatttgcaagaatactataaa i canFam3.chr1 C 0 C 0 a score=226175.000000 s hg38.chr9_GL383541v1_alt 113117 65 + 171286 gaactcctatatacttttcacccagctctacaa----attaagattttgccatg------tttgctttatctacc s panTro4.chr9 68678537 65 + 137840987 gaactcctatatacttttcacccagctctacaa----attaagattttgccatg------tttgctttatctacc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64834459 65 + 135191526 gaactcctatatactcttcacccagctctacaa----attaagattttgccatg------tttgctttatctacc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57870480 60 - 122973662 gaactcctatatactcttaacccagctctacaa----attaagattttgccatg-----------tttATCTACT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79804003 65 + 112192347 gaactcctatatactcttcacccagctctacaa----attaacattttgccatg------tttgctttatctacc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80884008 65 + 112612857 gaactcctatatactcttcacccagctctacaa----attaacattttgccatg------tttgctttatctacc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76933360 65 + 107442819 GAACTCCTATATACTCTTCACCCAGCTCTAcaa----attaacattttgccatg------tttgcgTTATCTAcc i papAnu2.chr15 C 0 I 154 s chlSab2.chr12 81197983 65 + 108555830 gaactcctatatactcttcactcagctctacaa----attaacattttgccatg------tttgctttatctacc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111431776 65 - 210400635 gaactcctgtagactatttacccagctctacaa----attaacattttgccatg------tttgctttatctgct i calJac3.chr1 I 167 C 0 s mm10.chr19 38076854 74 - 61431566 GAACTCCC-TAGACTCTTTTCTCAGATCTACAACAGTGATAGCATTAGGCAGGGCCAGCATTTGTCTTACCAGAC i mm10.chr19 I 8 C 0 s canFam3.chr1 35318577 66 - 122678785 gaactctcatataagcttcacccaggtctaagt---tattaccattttaccaga------tttaccttattgacc i canFam3.chr1 C 0 C 0 a score=12024.000000 s hg38.chr9_GL383541v1_alt 113182 4 + 171286 attt s panTro4.chr9 68678602 4 + 137840987 attt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64834524 4 + 135191526 attt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57870540 4 - 122973662 ATTT i nomLeu3.chr1a C 0 I 3810 s rheMac3.chr15 79804068 4 + 112192347 gttt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80884073 4 + 112612857 gttt i macFas5.chr15 C 0 C 0 s chlSab2.chr12 81198048 4 + 108555830 attt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111431841 4 - 210400635 gttt i calJac3.chr1 C 0 C 0 s mm10.chr19 38076928 3 - 61431566 -CTT i mm10.chr19 C 0 I 1 s canFam3.chr1 35318643 4 - 122678785 attt i canFam3.chr1 C 0 C 0 e papAnu2.chr15 76933425 154 + 107442819 I a score=606587.000000 s hg38.chr9_GL383541v1_alt 113186 169 + 171286 aagaataggttgcaaacatcatgcccctttaccattaaatattttagtgtgtattttat--aatcaaacacattcttcagcataa----ctataggataattacggagttcaggaaatttaa-tactgatacaaca-ttatcaacttactttcggtccatacaccaatgt-ttccaat s panTro4.chr9 68678606 169 + 137840987 aagaataggttgcaaacatcatgcccctttaccattaaatattttagtgtgtattttat--aatcaaacacattcttcaacataa----ctataggataattatggagttcaggaaatttaa-tactgatacaaca-ttatcaacttactttcggtccatacaccaatgt-ttccaat i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64834528 169 + 135191526 aagaataggttgcaaacatcatgcccctttaccattaaatattttagtgtgtattttat--aatcaaacacattcttcagcataa----ctataggataattatggagttcaggaaatttaa-tactgatacaaca-ttatcaacttactttcggtccatacaccaatgt-ttccaat i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57874354 168 - 122973662 aagaataggttgcaaacatcat-cccctttaccattaaatattttagtgtatattttat--aatcaaacacattcttcagcataa----ctacaggataattatggagttcaggaaatttaa-tactgatacaaca-ttatcaacttactttcggtccatacaccaatat-ttccaat i nomLeu3.chr1a I 3810 C 0 s rheMac3.chr15 79804072 169 + 112192347 aagaataggttgcaaacatcatgccgctttaccattaaatatttcagtgtgtattttat--aatcaaacacgttcttcagcataa----ctataggatgattatggagttcaggaaatttaa-tactgatacaaca-ttatcaacttactttcagtccatacaccaatgt-ttccaat i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80884077 169 + 112612857 aagaataggttgcaaacatcatgccgctttaccattaaatatttcagtgtgtattttat--aatcaaacacgttcttcagcataa----ctataggatgattatggagttcaggaaatttaa-tactgatacaaca-ttatcaacttactttcagtccatacaccaatgt-ttccaat i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76933579 169 + 107442819 aaaaataggttgcaAACATCATGCCCCTTTAccattaaatattttagtgtgtATTTTAT--AATCAAACACGTTCTTCAGCATAA----CTATGGGATAATTATGGAGTTCAGGAAATTTAA-TACTGATACAACA-TTATCAACTTACTTTCAGTCCATACACCAATGT-TTCCAAT i papAnu2.chr15 I 154 C 0 s chlSab2.chr12 81198052 169 + 108555830 aaaaataggttgcaaacatcatgcccatttaccattaaatattttagtgtgtattttat--aaccaaacacgttcttcagcgtaa----ctataggataattatggagttcaggaaatttaa-tactgatacaaca-ttatcaacttactttcagtccatacaccaatgt-ttccaat i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111431845 170 - 210400635 aaggataggttgcaaacatcatgcccctttactgctatatattttagtgtgtattttat--aaccaaataaattcttcagtgtaa----ctataaggtaattatggagttcaggatatttaa-caataatacaacatttatcaactaacttttagtccatacaccaatgt-ttccagt i calJac3.chr1 C 0 C 0 s mm10.chr19 38076932 129 - 61431566 AAG-----------AACACTGTTCTCCTT----------TGTTGCAATATGTA--------------------TCTGCCGTGTAA----CTATGGAATAATTAGTAAGTTTGGGACATTTAA-TGTTGATACAATG-TTATAAGTTAGTTCACAAAGCATACAACTGT-T-CCCCGAC i mm10.chr19 I 1 C 0 s canFam3.chr1 35318647 177 - 122678785 aagagtaagttgcagacattatgcccctttgcccctaaatacttcagtgtgtattttctaaaacccagtgcattttccagagttaactcccatcaaataactataaagttcaggaaatttagctactgatacagta-ttatcaactaactcatggtccacatactaatttattccaat i canFam3.chr1 C 0 I 151 a score=1546517.000000 s hg38.chr9_GL383541v1_alt 113355 433 + 171286 tgccc-----------------------------------------------caataacaacctttatagatatgtgttcttctggaccaagattgaatcttgcatccctggtagcatttgattgtcatgcctctttcatccactttaatctgggtcagttcctcaacccacctgaatgttttcttgctttggaaattgacaaattgagaatatagtaagtttttat--------agTGAGCTGTTTCATCGGCTCACTGCTCCTAGAGCCCAAATGTTTCCCTAGAGATAATTTTCCAGTTATTCAA---CACATGTCCTCTCTCCCT------AGATTGT--TAGAC--GTGTATG----TCAGCATTCAGACAAGAATCACA---------------CT-------------TGGCTGCACCGACTGTATCCCAA-CTGCTACAGTCACATCCCCTCTGTTCTAAGAGGGCAATCTGAACAGTGTGATTTACAAGCCAATTGTTGATAGGATTAAAAGTTATTCTCAAAAG s panTro4.chr9 68678775 433 + 137840987 tgccc-----------------------------------------------caataacaacctttatagatatctgttcttctggaccaagattgaatcttgcatccctggtagcatttgattgtcatgcctctttcatccactttaatctgggtcagttcctcaACCCACCTGAATGTTTTCTTGCTTTGGAAATTGACAAATTGAGAATATGGTAAGTTTTTAT--------AGTGAGCTGTTTCATCGGCTCACTGCTCCTAGAGCCCAAATGTTTCCCTAGAGATAATTTTCCAGTTATTCAA---CACATGTCCTCTCTCCCT------AGATTGT--TAGAC--GTGTATG----TCAGCATTCAGACAAGAATCACA---------------CT-------------TGGCTGCACCAACTGTATCCCAA-CTGCTACAGTCACATCCCCTCTGTTCTAAGAGGGCAATCTGAACAGCGTGATTTACAAGCCAATTGTTGATAGGATTAAAAGTTATTCTCAAAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64834697 439 + 135191526 tgccc-----------------------------------------------caataacaacctttatagatatctgttcttctggaccaagattgaatcttgcatccctggtagcatttgattgtcatgcctctttcatccactttaatctgggtcagttcttcagccCACCTGAATGTTTTCTTGCTTTGGAAATTGACAAATTGAGAATATAGTAAGTTTTTAT--------AGTGAGCTGTTTCATCGGCTCACTGCTCCTAGAGCTCAAATGTTTCCCTAGAGATAATTTTCCAGTTATTCAA---CACATGTCCTCTCTCCCTAGTCCCAGATTGT--TAGAC--GTGTATG----TCAGCATTCAGACAAGAATCACA---------------CT-------------TGGCTGCACCGAATGTATCCCAA-CTGCTACAGTCACATCCCCTCTGTTCTAAGAGGGCAATCTGAACAGCGTGATTTACAAGCCACTTGTTGATAGGATTAAAAGTTATTCTCAAAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57874522 466 - 122973662 tgccc-----------------------------------------------caataacaacctttatagatatctgttcttctggaccaagattgaatcttgcatccctgatagcatttgattgtcatgcctctttcatccactttaatctgggtcagttcttcagccCACCTGAATGTTTTCTTGCTTTGGAAATTGAC-AATTGAGAATACAGTACGTTTTTAT--------AGTGAGCTATTTCATTGGCTCACTGCTCCTAGAGCTCAAATGTTTCCCTAGAGATAATTTTCCAGTTATTCAA---CACGTGTCCTCTCTCCCTAGTCCTAGATTGT--TAGAC--ATGTGTG----TCAGCATTCAGACAAGAATCACAGATTCTGCACCGAATCTGTGCAGCACCGAATGGCTGCACCGAATGTATCCCAA-CTGCTACGGTCACATCCCCTCTGTTCTAAGAGGGCAATCTGAACAGCGTGATTTACAAGCCACTTGTTGATAGGATTAAAAGTTATTCTCAAAAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79804241 439 + 112192347 tgccc-----------------------------------------------caataacaacctttacagatatttgttcttctggaccaagattgaatcttgcatccctggtagcatttggttgtcatgcgtctttcatccactttaatctgggtcagttcttcagccCACCTGAATGCTTTCTTGCTTTAGAAATTGACAAATTGAGAATACAGTAAGTTTTTAT--------AGTGAGCTGTTTCATCGGCTCACTGTTCCTAGAGTTCAAATGTTTCTCTAGAGATAATTTTCCAGTTATTCAA---CACATGTCCTCTCTCCATAATTCTGGATTGT--TAGAC--ATGTGTG----TCAGCATGCAGAGAAGAATCACA---------------CT-------------TGGCTGCACCCAATGTATCCCAA-CTGCTACAGTCACATCCCCTCTGTTCTGAGAGGGCAATCTGAACAGCGTGATTTACAAGCCACTTGTTGATAGGATTAAAAGTTATTCTCAAAAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80884246 439 + 112612857 tgccc-----------------------------------------------caataacaacctttacagatatttgttcttctggaccaagattgaatcttgcatccctggtagcatttggttgtcatgcgtctttcatccactttaatctgggtcagttcttcagccCACCTGAATGCTTTCTTGCTTTAGAAATTGACAAATTGAGAATACAGTAAGTTTTTAT--------AGTGAGCTGTTTCATCGGCTCACTGTTCCTAGAGTTCAAATGTTTCTCTAGAGATAATTTTCCAGTTATTCAA---CACATGTCCTCTCTCCATAATTCTGGATTGT--TAGAC--ATGTGTG----TCAGCATGCAGAGAAGAATCACA---------------CT-------------TGGCTGCACCCAATGTATCCCAA-CTGCTACAGTCACATCCCCTCTGTTCTGAGAGGGCAATCTGAACAGCGTGATTTACAAGCCACTTGTTGATAGGATTAAAAGTTATTCTCAAAAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76933748 438 + 107442819 TGCCC-----------------------------------------------CAATAACAACCTTTACAGCTATTTGTTCTTCTGGACCAAGATTGAATCTTGCATCCCTGGTAGCATTTGGTTGTCATGTGTCTTTCATCCACTTTAATCTGGGTCAGTTCTTCAGCCCACCTGAATGCTTTCTTGCTttagaaattgacaaattgaGAATACAGTAAGTTTTTAT--------AGTGAGCTGTTTCATCGGCTCACTGCTCCTAGAGCTCAAATGTTTA-CTAGAGATAATTTTCCAGTTATTCAA---CACATGTCCTCTCTCCATAATTCTGGATTGT--TAGAC--ATGTGTG----TCAGCATGCAGAGAAGAATCACA---------------CT-------------TGGCTGCACCCAATATATCCCAA-CTGCTACAGTCACATCCCCTCTGTTCTAAGAGGGCAATCTGAACAGCGTGATTTACAAGCCACTTGTTGATAGGATTAAAAGTTATTCTCAAAAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81198221 439 + 108555830 tgccc-----------------------------------------------caataacaacctttacagatatttgttcttctggaccaagactgaatcttgcatccctggtagcatttgattgtcatgcgtctttcatccactttaatctgagtcagttcttcagccCACCTGAATGCTTTCTTGCTTTAGAAATTGACAAATTGAGAATATAGTAAGTTTTTAT--------AGTGAGCTGTTTAATCGGCTCACTGCTCCTAGAGCTCAAATGCTTCTCTAGAGATAATTTTCCAGTTATTCAA---CACATGTCCTCTCTCCATAATTCTGGATTGT--TAGAC--ATGTGCG----TCAGTATGCAGAGAAGAATCACA---------------CT-------------TGGCTGCACCCAATGTATCCCAA-CTGCTATAGTCACATCCCCTCTGTTCTAAGAGGGCAATCTGAACAGCGTGATTTACAAGCCACTTGTTGATAGGATTAAAAGTTATTCTCAAAAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111432015 425 - 210400635 tcccc-----------------------------------------------------------------atatttgtttttctggaccaagattaaatcttgcatccctggtagcatttggttgtcatgcctcggtcgtccacttttacctgggtcggttcctcagcctatctGAATGTTTTCTTGCTTTGGAAATTGACAAATTGAGAATATAGTAAGTTTTTAT--------AGTGAGGTGTTTCATCAGCTCACTGCTCCTAGAGCTCAAATGTTTCTCTAGAGATAATTTTCCAGTTATTCAA---CACATGTCCTCTCTCCCTGGTCCTCAACTGT--TAGAC--ATGTCTGCATTCTAGCATGCAGACAAGAATCACA---------------CT-------------TGGCTACACCAAATATATCCCAC-CTGCTACAGTCACATCCCCTCTGGTCTAAGAAGGCAATCTGAACAGTGTGATTTATAAGCCATTTGTTGATAGGATTAAAAGTTATTCTCAGAAG i calJac3.chr1 C 0 C 0 s mm10.chr19 38077061 415 - 61431566 TGGTT---------------------------------------------------------TTCTAAAGCTATATGTTTTTCTGGGTCAAAACTAAATCTTGGGTTCCTTGTACCATTTGGTTG-AATGATTCTTTTGGCCA-TTTCCCCTGACTGTGTTCTTCTGCCCACGTGAGTACTTTCTTGGTTTGAAAATTAAC----TGAGAACATAGCCTTGACCTAA--------CGGCCCCTGAGTTGCCAGCTGGCTGTCCCCAGAAT--GAAAGTTTCTGCAGAAAGGACTTTCCAGATATACAAAACAACACGCTTTATCGCTCTAGCCCTAAAATGTCCCAGCT--GTGTCTC----TCACCAATCAGACTAGGCTCATA---------------CT-------------GAGC------------ATCCCAATCTGCTGTGGTTACATCCCCTCTAACTCCAGAGGGCAACGTAAGCTATGAGGCTTCTAAGTCCTGCGTTAATAGGATCAACCATTATTCCCAAGGG i mm10.chr19 C 0 C 0 s canFam3.chr1 35318975 466 - 122678785 tgccctgggccgaaggcagacgctaaaccgctgagccacccagggatcccctcaatcctgtcttttataactctttgctttctgggaccaagattgaatgttgggtcccttatagcatttggttgtcatgcctcttccatcccctttaatctgggccagctcctcagccCACTTGATGGTTTTCTTGCTTTAGAAATTGAAGCATTGAGAGTATAGTGAGGTTCTGTCCATTATCAGCTTCCTGTTTCATCATGTCACTGCTCCCAGAACTCAAATATTTCTCTAG--------------------AA---CAT---TTCTCTTTCTCTGGCCCTAAAAACT--TAGGCCAGCGTATG----TCAGCATGCAGA-ACGGATCACA---------------GT-------------TGGCTACATTAAATGTGTCCCAAACTGTGGCAGTCACATCCCCTCTGGACTCAGA---CAATCTGAACAGTGAGATTTACAA-TCACTTGTTG-CAGTACCAA--GTTATTCTCAAAAC i canFam3.chr1 I 151 C 0 a score=42996.000000 s hg38.chr9_GL383541v1_alt 113788 14 + 171286 AGCAGAAGCA---tttt s panTro4.chr9 68679208 14 + 137840987 AGCAGAAGCA---tttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64835136 14 + 135191526 AGTAGAAGTA---tttt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57874988 14 - 122973662 AGCAGAAGCA---tttt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79804680 14 + 112192347 AGCAGAAGTA---tttt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80884685 14 + 112612857 AGCAGAAGTA---tttt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76934186 14 + 107442819 AGcagaagta---tttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81198660 14 + 108555830 AGCAGAAGTA---tttt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111432440 17 - 210400635 AGCAGAAATCttttttt i calJac3.chr1 C 0 C 0 s mm10.chr19 38077476 14 - 61431566 AGCAGGAGGA---CTCT i mm10.chr19 C 0 I 16 e canFam3.chr1 35319441 0 - 122678785 C a score=2259538.000000 s hg38.chr9_GL383541v1_alt 113802 791 + 171286 atttgtataaatgtatgtggtacaaatacagttttgttacaggcatagattgcatagtgttaagtgaggattttagggtatccatcctggcgtaacatacattgtacccattaagtaatttcttaccttccataccccctcctactccctcacccttctaagtctccaccgcctatcattccactctctgtatcagtgtgtacacattatttagctcccacttatgagtgagagcatgtagtatttgtgtttctgtgtctgacttgtttcacctaagataatgacctccaattccaaccatgttgctgcaaaagacataatttcattgtttttatggatgaatagtattccagtttgtatgtacatatgatactttctttattcagtcatccgctgatgggcactgaggttgtttccttatctttgctactgttaatagtgctaagataaaca-tacaagtgcatcatctttttgatatattga-tttctttgcctttgactagatacccagtaatgggattgctggatcaaatggcagttctattttc----------------atttttttgagaaatctccacactgttttccatagtggctgtgctagtttacattctcactaacattgtataagagttcccttttctccacatcctcaccaacatctgttaatttttgtctttttaataatagccattctgactaagatgata---tcgtgtagttttaatttgcatttctctgctgattagtgatgttgaacattttttttatatacctgttggccatttgtatgtcttctCAAAG s panTro4.chr9 68679222 791 + 137840987 atttgtataaatgtatgtggtacaaatacagttttgttacaggcatagattgcatagtgttaagtgaggattttagggtatccatcctggcataacatacattgtacccattaagtaatttcttaccttccataccccctcctactccttcacccttctaagtctccaccgcctatcattccactctctgtatcagtgtgtacacattatttagctcccacttatgagtgagagcatgtagtatttgtgtttctgtgtctgacttgtttcacctaagataatgacctccaattccaaccatgttgctgcaaaagacataatttcattgtttttatggatgaatagtattccagtttgtatgtacatatgatactttctttattcagtcatccgctgatgggcactgaggttgtttccttatctttgctactgttaatagtgctaagataaaca-tacaagtgcatcatctttttgatatattga-tttctttgcctttgagtagatacccagtaatgggattgctggatcaaatggcagttctattttc----------------atttttttgagaaatctccacactgttttccacagtggctgtactagtttacattctcactaacattgtataagagttcccttttctccacatcctcaccaacatctgttaatttttgtctttttaataatagccattctgactaagatgata---tcgtgtagttttaatttgcatttctctgctgattagtgatgttgaacatttttttaatatacctgttggccatttgtatgtcttctCAAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64835150 785 + 135191526 atttgtataaatgtatgtggcacaaatacggttttgttacaggcatagattgcatagtgttaagtgaggattttaaggtatccatcctggaataacatacattgtacccattaagtaattccttaccttccataccccctcctactccctcacccttctaagtctccactgcctatcattccattctctgtatcagtgtgtacacattatttagctcccacttatgagtgagagcatgtagtatttgtgtttctgtgtctgacttgtttcacctaagataatgacctccaattccaaccatgttgctgcaaaagacataatttcattgtttttatggatgaatagtattccagtttgtatgtacatatgata----ctttattcagtcatccgctgatgggcactgaggttgtttccttatctttgctactgttaatagtgctgagataaaca-tacaagtgcatcatctttttgatatattga-tttcttttcctttgagtagatactcagtaatgggattgctggatcgaatggtagttctattttc----------------atttttttgagaaatctccacactcttttccatagtggctgtactagtttacattctcactaacattgtataagagttcccttttctccacatcctcaccaaca--tgttaatttttgtctttttaataatagccattctgactaagctgata---tcgtgtagttttaatttgcatttctctgccgattagtgatgttgaacattttttttatatacctgttggccatttgtatgtcttctCAAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57875002 792 - 122973662 atctgtataaatgtatgtggtacaagtacagttttgttacaggcatagatttcatagcgttaagtgaggattttaaggtatccatcctggagtaacatacactgtactcattaagtaatttcctatcttccataccccctcctactccctcacccttctaagtctccactgcctatgattccactctctgtatcagtgtgtacacattatttagctcccacttatgagtgagag-atgtagtatttgtgtttctgtgtctgacttgtttcacctaagataatgacctccaattccaaccatgttgctgcaaaagacataatttcattgtttttatggatgaatagtattcc---------------atgatactttctttattcagtcatctgctgatgggtgctgaggttgattccttatctttgctactgttaatagtgctgagataaacattacaagtgcagcatctttttgatatattgatttttttttcctttgagtagatacccagtaatgggattgctggatcgaatggtagttcgattttcttttctttttttttttttttttttgagaaatctccacactgttttccatagtggctgtactagtttacattctcactaacattgtataagagttcccttttctccacatcctcaccaacatctgttaatttttgtctttttaataatagccattctgactaagatgata---tcttgtagttttaatttccatttctctgctgattagtgatgttgaac-ttttttctatatacctgttggccatttgtatgtcttctCAAAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79804694 777 + 112192347 atttgtataaatgtatgtggtgcaagtacagttttgttacaggcatagattgtatagtgt----tgaggattttaaggcatccatcctggagtaacatacattgtacccattaagtaatttcttatcttccataccctctcctactccctcacccttctaagtttccactgtctatcattcca--ctctgtatcagtgtgtacatattacttagctcccacttatgagtgagagcatgcagtatttgtgtttatgtgtctgacttgtttcgcttaagataatgacctccaata-caaccatgttgctgcaaaagacataatttcattgtttttacggatgaatagtattccagtttgtatgtacatatgatactttctttattcagtcatccgctgatgggcacttaggttgattccttatctttggtactgttaatagtgctgagataaaca-tacaagtgcagtatctttttggtatattga-tttctttacctttgagtagatacccagtaatgggattgctggatcgaatggtaattctattttc----------------atttttttgagaaatctccaca--gttttctgtagtggctgggcttgtttacattctcactaacactgtgtaagagttcccttttctccacctcctcaccaacatctgttaatttttgtctttttattaatagccatt----ctaagatatct---tgttgtagttttaatttgcatttctctgctgattagtgatgttgaacactttttt-atatacctgttggccgtctgtatgtcttcttAAAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80884699 777 + 112612857 atttgtataaatgtatgtggtgcaagtacagttttgttacaggcatagattgtatagtgt----tgaggattttaaggcatccatcctggagtaacatacattgtacccattaagtaatttcttatcttccataccctctcctactccctcacccttctaagtttccactgtctatcattcca--ctctgtaacagtgtgtacatattacttagctcccacttatgagtgagagcatgcagtatttgtgtttatgtgtctgacttgttttgcttaagataatgacctccaata-caaccatgttgctgcaaaagacataatttcattgtttttatggatgaatagtattccagtttgtatgtacatatgatactttctttattcagtcatccgttgatgggcacttaggttgattccttatctttggtactgttaatagtgctgagataaaca-taaaagtgcagtatctttttggtatattga-tttcttttcctttgagtagatacccagtaatgggattgctggatcgaatggtaattctattttc----------------atttttttgagaaatctccaca--gttttccgtagtggctgtactagtttacattctcactaacactgtgtaagagttcccttttctccacctcctcaccaacatctgttaatttttgtctttttattaatagccatt----ctaagatatct---tgttgtagttttaatttgcatttctctgctgattagtgatgttgaacactttttt-atatacctgttggccgtctgtatgtcttcttAAAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76934200 779 + 107442819 atttgtataaatgtatgtggtgcaagtacagttttgttacaGGCATAGATTGCATAGTGTTAAGTGAGGATTTTAAGGTATCCATCCTGGAGTAacatacattgtacccattaagtaatttcttatcTTCCATACCCCCTCCTACTCCCTCACCCTTCTAAGTCTCCACTGTCTATCATTCCA--CTCTGTATCAGTGTGTACATattacttagctcccacttatgagtgagagcatgcagtatttgtgtttctgtgtctgacttgttttgcttaagataatgacctccaata-caaccatgttgctgcaaaagacataatttcattgtttttatggatgaatagtattccagtTTGTACGTACATATGA----TTCGTTATTCAGTCATccgttgatgggcacttaggttgattccttatctttGGTACTGTTAATAGTGCTgagataaaca-tacaagtgcaatATCTTTTTggtatattga-tttcttttactttgagtagatacccagtaatgggattgctggatcgaatggtagttctattttc----------------atttttttgagaaacctccacactgttttccgtagtggctgtactagtttacattctcactaacactgtgtaagagttcccttttctccacctcctcaccaacatctgttaatttttgtctttttattaatagccatt----ctaagaTATCt---tgttgtagttttaatttgcatttctctgctgattagtgatgttgaacactttttt-atatacctgttggccatttgtatgtcttcttaaAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81198674 782 + 108555830 atttgtataaatgtatgtggtgcaagtacagttttgttacaggcatagattgcatagtgttaagtgaggattttaaggtatccatcctggagtaacatacattttacccattaagtaatttcttatcttccataccccctcctactccctcacccttctaagtctccactgtctatcattccactctctgtatcagtgtgtacatattatttagttcccacttatgagtgagagcatgcagtatttgtgtttctgtgtctgacttgttttgcttaagataatgacctccaataccaaccatgttgctgcaaaagacataatttcattgtttttatggatgaatagcattccagtttgtatgtacatatgatactttctttattcagtcatccgttgatgggcacttaggttgattccttatctttggtactgttaatagtgctgagataaaca-tacaagtgcagtatctttttggtatattga-tttcttttcctttgagtagatacccagtaatgggattgctggatcgaatggtagttctattttc----------------atttttttgagaaatctccacactgttttccatagcggctgtactagtttacattctcactaacactgtataa----tcccttttctccacctcctcatcaacatctgttaatttttgtctttttattaatagccatt----ctaagatatct---tgttgtagttttaatttgcatttctctgctgattagtgatgttgaacactttttt-atatacctgttggccgtttgtatgtcttcttAAAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111432457 789 - 210400635 atttgtataaacgtatgtggtacaagtacagttttgttacaagcatagattgcatagtgttaagtgaggattacaaggtatccgtcccagagtaacatacattgtacccattaaggaatttcttatcttacataccccttcctactccctcacccttctaagtctccattgcct---attgcactctctgtatcagtgtgtacacattatttagctcccacttatgagtgagaatgtgcagtatttgtgtttctgtgtctgacttgtttcagttaagataatgacctccagttccaaccatgtttctgcaaatgacataatttcattacttttatggatggatactcttccagcttgtatgtacgtatgaaacttagtttattcaatcatctgttgatgggcacttaggctgattccttattcttgctactgctaacagtgctgagataaaca-tagggttgcaggcatcctttgatatattaa-tttcttttcctttgagtagatacccagtaatgggattgctgcattaaatggtaattctattttc----------------atttttctaaaaaatctccacactgttttccatagggggtatactagtttacattttcaccaacagtgtataagagttcccttttctccacatcctcaccaacatctgttagtttttgtctttttagtaatagccatc-tgactaagatgatatcctgttgtgattttaatttgcatttcaattccgattagtgatgttgaacattttttc-atatacctgttggccatttgtatgtcttctCAAAC i calJac3.chr1 C 0 C 0 e mm10.chr19 38077490 16 - 61431566 I e canFam3.chr1 35319441 0 - 122678785 C a score=79839.000000 s hg38.chr9_GL383541v1_alt 114593 22 + 171286 AGCAGAAATCTTTTATGTTACC----- s panTro4.chr9 68680013 22 + 137840987 AGCAGAAATCTTTTATGTTCCC----- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64835935 22 + 135191526 AGCAGAAATCTTTTATGTTCCC----- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57875794 22 - 122973662 AGCAGAAATCTTTTATGTTCCC----- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79805471 22 + 112192347 AGCAGAAATCTTTTATGTTCCC----- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80885476 22 + 112612857 AGCAGAAATCTTTTATGTTCCC----- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76934979 22 + 107442819 AGCAGAAATCTTTTATGTTCCC----- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81199456 22 + 108555830 AGCAGAAATCTTTTATGTTCCC----- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111433246 21 - 210400635 AGCAGAAATC-TTTATGTTCCC----- i calJac3.chr1 C 0 C 0 s canFam3.chr1 35319441 27 - 122678785 AGCAGAAATCTTTTATGTTCCATTCAC i canFam3.chr1 C 0 C 0 e mm10.chr19 38077490 16 - 61431566 I a score=1277369.000000 s hg38.chr9_GL383541v1_alt 114615 366 + 171286 TCCAGGCCATCTGGGGT---GA---GGTATTTATAGAACAGGGTAAATAATACCAGAACTCGGC-AAAGTCAAAGCAATAGCAGTACCCATGACAGAACT---GTGACTCTTT-GACCTGCACAATTTAAACTGAGTGATGACTTTCTTCAAGCAGATCAGCTCCTACTACTGATGTCA-----AAGTAGACATCAGCTGTGCTTCTGACACAGAGATTGAGCAACAAAGGAAAATTGTTTCTATAAAATATTATATCTAAAATC-TTCATCTT-AGAGACAGATT--GAGTCCCAT--------AAAATCTCTTCCTTTTCTC-TTTTTTCTTTTAAAATTTTTATGAAT-GAATTGTGAATTGTGAAGAAGTATATGAATAAACATTCACAGTC s panTro4.chr9 68680035 363 + 137840987 TCCAGGCCATCTGGGGT---GA---GGTATTTATAGAACAGGGTAAATAATACCAGAACTCAGC-AAAGTCAAAGCAATAGCAGTACCCATGACAGAACT---GTGACTCTTT-GACCTGCACAATTTAAACTGAGTGATGACTTTCTTCAAGCAGATCAGCTCCTACTACTGATGTCA-----AAGTAGACATCAGCTGTGCTTCTGACACAGAGATTGAGCAACAAAGGAAAATTGTTTCTATAAAA---TATATCTAAAATC-TTCATCTT-AGAGACAGATT--GAGTCCCAT--------AAAATCTCTTCCTTTTCTC-TTTTTTCTTTTAAAATTTTTATGAAT-GAATTGTGAATTGTGAAGAAGTATATGAATAAACATTCACAGTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64835957 367 + 135191526 TCTAGGCCATCTGGGGT---GA---GGTATTTATAGAACAGGATAAATAATACCAGAACTCGGC-AAAGTCAAAGCAATAGCAGTACCCATGACAGAACT---GTGACTCTTT-GACCTGCACAATTTAAACTGAGTGATGACTTTCTTCAAGCAGATCAGCTCCTACTACTGATGTCA-----AAGTAGACATCAGCTGTGCTTCTGACACAGAGATTGAGCAACAAAGGAAAATTATTTCTATAAAATATTATATCTAAAATC-TTCATCTT-AGAGACAAATT--GAGTCCCAT--------AAAATCTCTTCCTTTTCTCTTTTTTTCTTTTAAAATTTTTATGAAT-GAATTGTGAATTGTGAAGAAGTATATGAATAAATGTTCACAGTC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57875816 366 - 122973662 TCCAGGCCATCTGGGGT---GA---GGTATTTATAGAACAGGGTAAATAATACCAGAACTCGGC-AAAGTCAAAGCAATAGCAGTACCCATGACAGAACT---GTGACTCTTT-GACCTGCACAATTTAAACTGAGTGATGACTTTCTTCAAGCAGATCAGCTCCTACTACTGATGTCA-----AAGTAGACAGCAGCTGTGCCTCTGACACAGAGATTGAGCAACAAAGGAAAATTATTTCTATAAAATAATATATCTAAAATC-TTCATCTT-AGAGACAAATT--GAGTCCCAT--------AAAATGTCTTCCTTTTCTC-TTTTTTCTTTTAAAATTTTTATGAAT-GAATTATGAATTGTGAAGAAGTATATAAATAAATGTTCACAGTC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79805493 362 + 112192347 TCCAGGCTATCTGGGGT---GA---GGTATTTATAGAACAGGGTAAATAATACCAGAACTCGGT-GAAGTCAAAGCAATAGCAGTACCCATGACAGATCT---GTGACTCTTT-GACCTGCACCATTTAAACTGAGTGATGACTTTCTTCAAGCAGATCAGCTCCTACTACTGATGGCA-----AAGTAGACAGCAGCTGTGCTTCTGACATAGAGATTGAGCAACAAAGGAAAATTGTTTCTGTAAAA-----CATCTAAAATC-TTCATCTT-AGAGACAAATT--GAGTCCCAT--------AAAATATCTTCCTTTTCCCTTTCTTCATTTTAAAACTTTTATGAAT-GAATTGTGAATTGTGAAGAAGTATATGAATAAATGTTCACATTA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80885498 362 + 112612857 TCCAGGCTATCTGGGGT---GA---GGTATTTATAGAACAGGGTAAATAATACCAGAACTCGGT-GAAGTCAAAGCAATAGCAGTACCCATGACAGATCT---GTGACTCTTT-GACCTGCACCATTTAAACTGAGTGATGACTTTCTTCAAGCAGATCAGCTCCTATTACTGATGGCA-----AAGTAGACAGCAGCTGTGCTTCTGACATAGAGATTGAGCAACAAAGGAAAATTGTTTCTGTAAAA-----CATCTAAAATC-TTCATCTT-AGAGACAAATT--GAGTCCCAT--------AAAATATCTTCCTTTTCCCTTTTTTCATTTTAAAACTTTTATGAAT-GAATTGTGAATTGTGAAGAAGTATATGAATAAATGTTCACAGTA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76935001 362 + 107442819 TCCAGGCTATCTGGGGT---GA---GGTATTTATAGAACAGGGTAAATAATACCAGAACTCGGT-GAAGTCAAAGCAATAGCAGTACCCATGACAGATCT---GTGACTCTTT-GACCTGCACGATTTAAACTGAGTGATGACTTTCTTCAAGCAGATCAGCTCCTACTACTGATGGCA-----ATGTAGACGGCAGCTGTGCTTCTGACACAAAGATTGAGcaacaaaggaaaattatttctgtaaaa-----tatctaaaatc-tTCATCTT-AGAAACAAATT--GAGTCCCAT--------AAAATATCTTCCTTTTCccgttttttattttaaaacttttatgaat-GAATTGTGAATTGTGAAGAAGTATATGAATAAATGTTCACAGTC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81199478 362 + 108555830 TCCAGACTATCTGGGGT---GA---GGTATTTATAGAACAGGGTAAATAATACCAGAACTCGGC-GAAGTCAAAGCAATAGCAGTACCCATGACAGATCT---GTGACTCTTT-GACCTGCACGATTTAAACTGAGTGATGACTTTCTTCAAGCGGATCAGCTCCTACTACTGATGGCA-----AAGTAGATGGCAGCTGTGTTTCTGACACAGAGATTGAGCAACAAAGGAAAATTATCTCTGTAAAA-----TATCTAAAATC-TTCATCTT-AGAAACAAATT--GAGTCCCAT--------AAAATATCTTCCTTCTCCCGTTTTTTATTTTAAAACTTTTATGAAT-GAATTGTGAATTGTGAAGGAGTATATGAATAAATGTTCACAGTC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111433267 359 - 210400635 TCCAGGCCATCTGGGCT---GA---GGTATTTATAGACCAGGGTAAATAATACTAGAACTCAGC-AAAGTCAAAGCAATAGCAGTACCCATAACAGAACT---GTGACTC--T-GAACTGCATGATTTAAACTGAGTGATGACCTTGCTCAAGCAGATCAGCTCCTGCTGCTGATGTGA-----AAGGGGACAGCAGCTGAGCTTCTGCCACAGCGACTGAGCAGCAAAGGAAAATGATTTATATAAAATATTATATCTAAAATCTTTTATCTT-AGAGACAAATT--GAGTCCCTT--------AAAATCTCTTTCTTTTCTCTCTCTTTCTTTTAAATTTTGTATGAA--------TGAATTGTGAAGAAGTATATGAATATGTGTTCACAGCC i calJac3.chr1 C 0 C 0 s mm10.chr19 38077506 349 - 61431566 TCTGGGCAGTCTGGGCCAAAGG---GACACTTGTGGGCCATTGTGAAGGATAACAGGACTCAGC-AAAGCCCAAACAGCAACG--CCCCCTGAAAAGCCCAGGGTGACT-TCT-GAACTCTGTGGTTTCTGGGAAGGGCTGTTTTTCCTCAAGAGCAGCAGTTCCTACAGCGAATGGCA-----------ATCATAACTG---CTCTGATGCTGGGACTAGTCAACAATGGGGAATTATCTCTGGAAAATACTAGTTCTAAAACA---CATCTT-AGAACTTAA----GAGCCTCTTTTTTAAAAAAAATCCTCTCCTTT-----TTCTGTCTTTTAAATGTTGTAGGGGTCGATTTGAAAGTTGTG------------AGTAAATGTTCACAGCC i mm10.chr19 I 16 C 0 s canFam3.chr1 35319468 372 - 122678785 TCCAGGCAATCTGGAAT---GAGGTGGTATTTATAGACCAGGGTAAATGATACCAGAACTCAGCAAAAGCCAAAATAATACCAG-----GTGATGAAATTGGTGTGACTTTTTGGAACAGCGAGGTTTATACTAAGCAATGATTTTCTTCAAGCAGATCAGCTCCTACTACTAGTGTCAATTATAAATAGACAGCGGCTGAGCTGGTGACACTGAGATTGATCAACAAAGGAAAATTATTTCTGGAAAATATTATTTCTAAAATA-CCTGTCTTAAGAGAAAAATTAAGAGTTCCTT--------AAAATCTTTACCTTT-----TTCTTTCTCTTTAATTTTCTATGAAT-GAATT-TGAATCGTGAAGAAATATGTGAATAATTGCTCCCAGTC i canFam3.chr1 C 0 C 0 a score=12452.000000 s hg38.chr9_GL383541v1_alt 114981 4 + 171286 ATGA s panTro4.chr9 68680398 4 + 137840987 ATGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64836324 4 + 135191526 ATGA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57876182 4 - 122973662 GTGA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79805855 4 + 112192347 ATGA i rheMac3.chr15 C 0 I 1 s macFas5.chr15 80885860 4 + 112612857 ATGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76935363 4 + 107442819 ATGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81199840 4 + 108555830 ATGA i chlSab2.chr12 C 0 I 1 s calJac3.chr1 111433626 4 - 210400635 ATGA i calJac3.chr1 C 0 C 0 e mm10.chr19 38077855 0 - 61431566 C e canFam3.chr1 35319840 0 - 122678785 C a score=69412.000000 s hg38.chr9_GL383541v1_alt 114985 752 + 171286 CAGGAAATTTCTTTTTATTTATTTATTAttattattattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtgtgctgcacccattaactcgtcatttagcattaggtatatctcctaatgctatccctcccccctccccccaccccacaacagtccccagagtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggtttttgtccttgcgatagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttggggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacgtgtgatgtgtctttatagcagcatgatttatagtcctttgggtatatacccagtaatgggatggctgagtcaattggtaattctagttctagatccctgaggaatcgccacgctgacttccacaatggttgaactagtttacagtcctaccaacagtgtaaaagtgttcctgtttctccacatcctctccagcacctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatggtatctcattgtggttttga s panTro4.chr9 68680402 751 + 137840987 CAGGAAATTTCTTTTTATTTATTTATTAttattattattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtgtgctgcacccattaactcgtcgtttagcattaggtatatctcctaatgctatccctcccccctccccccaccccacaacagtccccagagtgtgatgttcctcttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggtttttgtctttgcgatagtttactgagaatgatgatttccaa-ttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacattttgggttggttccaagtctttgctattgtaaatagtgccgcaataaacatacgtgtgatgtgtctttatagcagcatgatttatagtcctttgggtatatacccagtaatgggatggctgagtcaattggtaattctagttttagatccctgaggaattgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctgtttctccacatcctctccagcacctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatggtatctcattgtggttttga i panTro4.chr9 C 0 C 0 e mm10.chr19 38077855 0 - 61431566 C e chlSab2.chr12 81199844 1 + 108555830 I e canFam3.chr1 35319840 0 - 122678785 C e ponAbe2.chr9 64836328 0 + 135191526 C e rheMac3.chr15 79805859 1 + 112192347 I e calJac3.chr1 111433630 0 - 210400635 C e papAnu2.chr15 76935367 0 + 107442819 C e macFas5.chr15 80885864 0 + 112612857 C e nomLeu3.chr1a 57876186 0 - 122973662 C a score=2255.000000 s hg38.chr9_GL383541v1_alt 115737 15 + 171286 tttgcatttcCATGG s panTro4.chr9 68681153 15 + 137840987 tttgcatttcCATGG i panTro4.chr9 C 0 C 0 s mm10.chr19 38077855 12 - 61431566 TTTGCGTTCTCA--- i mm10.chr19 C 0 C 0 s canFam3.chr1 35319840 12 - 122678785 TTTACATTATGA--- i canFam3.chr1 C 0 C 0 e chlSab2.chr12 81199844 1 + 108555830 I e ponAbe2.chr9 64836328 0 + 135191526 C e rheMac3.chr15 79805859 1 + 112192347 I e calJac3.chr1 111433630 0 - 210400635 C e papAnu2.chr15 76935367 0 + 107442819 C e macFas5.chr15 80885864 0 + 112612857 C e nomLeu3.chr1a 57876186 0 - 122973662 C a score=1107.000000 s hg38.chr9_GL383541v1_alt 115752 1 + 171286 G s panTro4.chr9 68681168 1 + 137840987 G i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64836328 1 + 135191526 G i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57876186 1 - 122973662 A i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80885864 1 + 112612857 A i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76935367 1 + 107442819 A i papAnu2.chr15 C 0 C 0 s calJac3.chr1 111433630 1 - 210400635 A i calJac3.chr1 C 0 C 0 s mm10.chr19 38077867 1 - 61431566 A i mm10.chr19 C 0 C 0 s canFam3.chr1 35319852 1 - 122678785 A i canFam3.chr1 C 0 C 0 e chlSab2.chr12 81199844 1 + 108555830 I e rheMac3.chr15 79805859 1 + 112192347 I a score=2773611.000000 s hg38.chr9_GL383541v1_alt 115753 711 + 171286 AGGAAATTTCT----TTTGAAGTCGGGTA-----CTTCATTTTT-----ATAATGTGAACAGTGCTCCTTTCTCCCCTCCCTTTAGAAAGGAAAAGAACAATTTTCCTGTCATGTTGAAATGTTGGTTTGATTCTAAC-CTGTCAGCATGCCCTTTGGATAAAGATATTTAGTTGTGTTTTACTTCTTCGGTCTCCCCTGGTACAAATGTGTATATATAAATATCTGTCAACCAGTTGATGTAGTCCTTTGAGATCTTTGG----GACTGTCATTAACTTTGCTTGTCCTTTGCTCAGAACTTCTGTTCAGTGCCGTGGAAGCCAGCTGCAATTTTGAGCAAGATCTCTGCAACTTTTACCAAGAT---GAAGGTCCAGGTTGGACCCGAGTGAAAGTAAAACCAAACATGTATCGGGCTGGAGACCACACTACAGGCTTAGGTAAATCA--GAGATCTGTCTATGTGGG---GACATCTTGGGT---------------AGTCG-TGA-------GCTTTATTGGCCATTCCTACTTCACACCTGCAAAGACATCGACTTAAAGAA----------------------------------AAAAGGCAGCTGTGAAGAAGCAAAGACAATCAGTAGTCTTGTGTTTGACCATTTTTA--AAAATTGGAATTCAAGTTGCCGTGTTAACAAACATATTTGCTAGTTAATTAAACAGGCAAATCCTTGTAAAATATTTTGGAACTCACTTTAGATG---CAATACCTTTAAGGAAAAAAAATCTG-TTGAattgtatttata s panTro4.chr9 68681169 713 + 137840987 AGGAAATTTCT----TTTGAAGTCGGGTA-----CTTCATTTTT-----ATAATGTGAACAGTGCTCCTTTCTCCCCTCCCTTTAGAAAGGAAAAGAACAATTTTCCTGTCATGTTGAAATGTTGGTTTGATGCTAAC-CTGTCAGCATGCCCTTTGGGTAAAGATATTTAGTTGTGTTTTACTTCTTCGGTCTCCCCTGGTACAAATGTATATATATAAATATCTGTCAACCAGTTGATGTAGTCCTTTGAGATCTTTGG----GACTGTCATTAACTTTGCTTGTCCTTTGCTCAGAACTTCTGTTCAGTGCCGTGGAAGCCAGCTGCAATTTTGAGCAAGATCTCTGCAACTTTTACCAAGATAAAGAAGGTCCAGGTTGGACCCGAGTGAAAGTAAAACCAAACATGTATCGGGCTGGAGACCACACTACAGGCTTAGGTAAATCA--GGGATCTGTCTATGTGGG---GACATCTTGGGT---------------AGTCG-TGA-------GCTTTATTGGCCATTCCTACTTCACACCTGCAAAGACACCGACTTAAAGAA----------------------------------AAAAGGCAGCTGTGAAGAAGCAAAGACAATCAGTAATCTTGTGTTTGACCATTTTTA--AAAATTGGAATTCAAGTTGCCGTGTTAACAAACATATTTGCTAGTTAATTAAACAGGCAAATCCTTGTAAAATATTTTGGAACTCACTTTAGATG---CAATACCTTTAAGG-AAAAAAATCTG-TTGAattgtatttata i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64836329 717 + 135191526 AGGAAATTTCT----TTTGAAGTCGGGTA-----CTTCATTTTT-----ATAATGTGAACAGTGCTCCTTTCTCCCCTCCCTTTAGAAAGGAAAAGAACAATTTTCCTGTCATGTTGAAATGTTGGTTTGATGCTAAC-CTGTCAGCATGCCCTTTGGGTAAAGATATTTAGTTGTGCTTTACTTCTTCAATCTCCCCTGGTACAAATGTATATATATAAATATCTGTCAACCAGTTGATGTAGTCCTTTGAGATCTTTGGGACTGACTGTCATTAACTTTGCTTGTCCTTTGCTCAGAACTTCTGTTCAGTGCCGTGGAAGCCAGCTGCAATTTTGAGCAAGATCTCTGCAACTTTTACCAAGATAAAGAAGGTCCAGGTTGGACCCGAGTGAAAGTAAAACCAAACATGTATCGGGCTGGAGACCACACTACAGGCTTAGGTAAATCA--GGGATCTATCTATGTGGG---GACGTCTTGGGT---------------AGTCG-TAA-------GCTTTATTGGCCATTCCTACTTCATACCTGCAAAGATATCGACTTAAAGAA----------------------------------AAAAGGCAGCTGTGAAGAAGCAAAGACAATCAGTAATCTTGTGTTTGACCATTTTTT--AAAATTGGAATTCAAGTTGCCGTGTTAACAAACATATTTGCTAGTTAATTAAACAGGCAAATCCTTGTAAAATATTTTGGAACTCACTTTAGATG---CAATACCTTTAAGG-AAAAAAATCTG-TTGAattgtatttata i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57876187 717 - 122973662 AGGAAATTTCT----TTTGAAGTCGGGTA-----CTTCATTTTT-----ATAATGTGAACAGTGCTCCTTTCTCCCCTCCCTTTAGAAAGGAAAAGAACAATTTTCCTGTCATGTTGAAACGTTGGTTTGATGCTAAC-CTGTCAGCATGCCCTTTGGATAAAGATATTTAGTTGTGTTTTACTTCTTCGATCTCCCCTGGTATAAATGTGTATATATAAACATCTGTCAACCAGTTGATGTAGTCCTTTGAGATCTTTGGGACCGATTGTCATTAACTTTGCTTGTCCTTTGCTCAGAACTTCTGTTCAGTGCCGTGGAAGCCAGCTGCAATTTTGAGCAAGATCTCTGCAACTTTTACCAAGATAAAGAAGGTCCAGGTTGGACCCGAGTGAAAGTAAAACCAAACATGTATCGGGCTGGAGACCACACTACAGGCTTAGGTAAATCA--GGGATCTGTCTATGTGGG---GACATCTTGGGT---------------AGTCA-TAA-------GCTTTATTGGCCATTCCTACTTCATACCTGCAAAGACATCGACTTAAAGAA----------------------------------AAAAGGCAGCTGTGAAGAAGCAAAGACAATCAGTAATCTTGTTTTTGACCATGTTTT--AAAATTGGAATTCAAGTTGCCGTGTTAACAAACGTATTTGCTAGTTAATTAAACAGGCAAATCCTTGTAAAATACTTTGGAACTCACTTTAGATG---CAATACCTTTAAGG-AAAAACATCTG-TTGAattgtatttata i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79805860 717 + 112192347 AGGAAATTTCT----TTTGAAATCGGGTA-----CTTCATTTTT-----ATAATGTGAATAGTGCTCCTTTCTCCCCTCCCTTTAGAAAGGAAAAGAACAATTTTCCTGTCATGTTGAAACGCTGGTTTGATGCTAAC-CTGTCAGCAAGCCCTTTGGGTAAAGATATTTAGTTGTGTTTTATTTCTTCGGTCTCCCCTGGTACAAATGTGTATATATAAATATCTGTCAACCAGTCGATGTAGTCCTTTGAGATCTTTGGGACTGATTGTCATTAACTTTGTTTGTCCTTTGCTCAGAACTTCTGTTCAGTGCCGTGGAAGCCAGCTGCAATTTTGAGCAAGATCTCTGCAACTTTTACCAAGATAAAGAAGGTCCAGGTTGGACCCGAGTGAAAGTAAAACCAAACATGTATCGGGCTGGAGACCACACTACAGGCTTAGGTAAATCA--GGCATCTGTCTATGTGGG---TACATCTTGGGT---------------AGTCG-TAA-------GCTTTATTGGCCATTCCTACGTCATACCTGCAAAGACGTTGACTTAAAGAA----------------------------------AAAAGGCAACTGTGAAGAAGCAAAGACAATCAGTAATCTTGTGTTTGACAATTTTTT--AAAATTGAAATTCAAGTTGCTATGTCAGCAGACCTATTTGCTAGTTAATTAAACAGGCAAATTCTTGTAAAATATTTAGGAATTCACTTTAGATG---CAATACCTTTAAGG-AAAAAAATCTG-TTGAattgtatttata i rheMac3.chr15 I 1 C 0 s macFas5.chr15 80885865 717 + 112612857 AGGAAATTTCT----TTTGAAATCGGGTA-----CTTCATTTTT-----ATAATGTGAATAGTGCTCCTTTCTCCCCTCCCTTTAGAAAGGAAAAGAACAATTTTCCTGTCATGTTGAAACGCTGGTTTGATGCTAAC-CTGTCAGCAAGCCCTTTGGGTAAAGATATTTAGTTGTGTTTTACTTCTTCGGTCTCCCCTGGTACAAATGTGTATATATAAATATCTGTCAACCAGTCGATGTAGTCCTTTGAGATCTTTGGGACTGATTGTCATTAACTTTGTTTGTCCTTTGCTCAGAACTTCTGTTCAGTGCCGTGGAAGCCAGCTGCAATTTTGAGCAAGATCTCTGCAACTTTTACCAAGATAAAGAAGGTCCAGGTTGGACCCGAGTGAAAGTAAAACCAAACATGTATCGGGCTGGAGACCACACTACAGGCTTAGGTAAATCA--GGCATCTGTCTATGTGGG---TACATCTTGGGT---------------AGTCG-TAA-------GCTTTATTGGCCATTCCTACGTCATACCTGCAAAGACGTTGACTTAAAGAA----------------------------------AAAAGGCAACTGTGAAGAAGCAAAGACAATCAGTAATCTTGTGTTTGACAATTTTTT--AAAATTGAAATTCAAGTTGCTATGTCAGCAGACCTATTTGCTAGTTAATTAAACAGGCAAATTCTTGTAAAATATTTAGGAACTCACTTTAGATG---CAATACCTTTAAGG-AAAAAAATCTG-TTGAattgtatttata i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76935368 717 + 107442819 Aggaaatttct----tttgaaatcGGGTA-----CTTCATTTTT-----ATAATGTGAACAGTgctcctttctcccctccctttagaaaggaaaagaacaatttTCCTGTCATGTTGAAACGCTGGTTTGATGCTAAC-CTGTCAGCAAGCCCTTTGGGTAAAGATATTTAGTTGTGTTTTACTTCTTCGGTCTCCCCTGgtacaaatgtgtatatataaatgtctGTCAACCAGTTGATGTAGTCCTTTGAGATCTTTGGGACTGATTGTCATTAACTTTGTTTGTCCTTTGCTCAGAACTTCTGTTCAGTGCTGTGGAAGCCAGCTGCAATTTTGAGCAAGATCTCTGCAACTTTTACCAAGATAAAGAAGGTCCAGGTTGGACCCGAGTGAAAGTAAAACCAAACATGTATCGGGCTGGAGACCACACTACAGGCTTAGGTAAATCA--GGCATCTGTCTATGTGGG---TACATCTTGGGT---------------AGTCG-TAA-------GCTTTATTGGCCATTCCTACGTCATACCTGCAAAGACATTGACTTAAAGAA----------------------------------AAAAGGCAACTGTGAAGAAGCAAAGACAATCAGTAATCTTGtgtttgacaatttttt--aaaattgaaattcaaGTTGCTGTGTCAGCAGACCTATTTGCTAGTTAATTAAACAGGCAAATCCTTGTAAAATATTTAGGAACTCACTTTAGATG---CAAtacctttaagg-aaaaaaatctg-ttgaatTGTATTTATA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81199845 717 + 108555830 AGGAAATTTCT----TTTGAAATCGGGTA-----CTTCATTTTT-----ATAATGTGAACAGTGCTCCTTTCTCCCTTCCCTTTAGAAAGGAAAAGAACAATTTTCCTGTCATGTTGAAACGCTGGTTTGATGCTAAC-CTGTCAGCAAGCCCTTTGGGTAAAGATATTTAGTTGTGTTTTACTTCTTCGGTCTCCCCTGGTACAAATGTGTATATATAAATATCTGTCAACCAGTTGATGTAGTCCTTTGAGATCTTGGGGACTGATTGTCATTAACTTTGTTTGTCCTTTGCTCAGAACTTCTGTTCAGTGCCGTGGAAGCCAGCTGCAATTTTGAGCAAGATCTCTGCAACTTTTACCAAGATAAAGAAGGTCCAGGTTGGACCCGAGTGAAAGTAAAACCAAACATGTATCGGGTTGGAGACCACACTACAGGCTTAGGTAAATCA--GGCATCTGTCTATGTGGG---TACATCTTGGGT---------------AGTCG-TAA-------GCTTTATTGGCCATTCCTACGTCATACCTGCAAAGACATTGACTTAAAGAA----------------------------------AAAAGGCAACTGTGAAGAAGCAAAGACAATTAGTAATCTTGTGTTTGACAATTTTTT--TAAATTGAAATTCAAGTTGCTGTGTCAGCAGACCTATTTGCTAGTTAATTAAACAGGCAAATCCTTGTAAAATATTTAGGAACTCACTTTAGATG---CCATACCTTTAAGG-AAAAAAATCTG-TTGAattgtatttata i chlSab2.chr12 I 1 C 0 s calJac3.chr1 111433631 714 - 210400635 AGGAAATTTCT----TTTGAAGTCTGGTA-----CTTCATTTTT-----ATAATATGAACAGTGCTCTTTTCTCCCCTCCCTTTAGAGAGGGAAAGAACAATTTTCCTGTCATGTTGAAACATTGGTTTGATGCTAAC-CTGTCAGCATGCCATTTGGGTAAAGATATTTAGTTGTGTTTTACTTTTTTGGTCTCCCC-AGCACAAGTATGTATATATAAATATCTGTCAACCAGTTGATGTAGTCCTTTGAGGTCTTTGGGATTGATTGTCATTAACTTTCCTTGTCCTTTGCTCAGAACTTCTGTTCAGTGCCATGGAAGTCAGCTGCAATTTTGAGCAAGACCTCTGCAACTTTTACCAAGATAAAGAAGGTCCAGGTTGGACCCGAGTGAAAGTAAAACCAAACATGTATCGGGCTGGAGACCACACCACAGGCTTTGGTAAATCA--GGGAACCGTCTATGTGGG---GGCATCTTGGGT---------------AGTTGTTAA-------GCTTCACTGGCCATTCCTACTTCATACCTGCAAAGATACTGAC--AAAGAA----------------------------------AAAAGGCAGCTATGAAGAAGCAAAGACTATCAGCAATCTTATGTTTGGTCATTTTTT--AAAATTGGAATTCAAGTTTCTGTGCTAACAAATGTATTTGCTAGTTAATTAAACAGGCAAATCCTTGTAAATTATTTTGGAACTCACTTAAGATG---CAATACCTTTAAG--AAAAAGATCTG-CTGAattgtatttata i calJac3.chr1 C 0 C 0 s mm10.chr19 38077868 649 - 61431566 AGGAAATCCCTAGTATTTG----------------TTTATTTTT-GTAGATAATGTGATCAGAGCTGCCTGCTGCCCTCCTTTTAGAGAAGAAAAGAACAATTTTCCTGTCATGTCAAAACACTGTTTTGATGATAAAGCTGTCAGCCTG-----------------TTTTGCTGTGTATCTCTCCCTCAGTCT-CCCTGGCACAAATGTAGCCATA------TCTGTCCAGTGTTTGATGGAGTCCTCTGAGAATCCGGG--CTGACTG----TAACTTTGGTTCTCATTTGTCCAGGGCTTCCTTTCAGTGCTGTGGAAACCAGCTGCGATTTTGAGATAGGCCTCTGCAACTTTTATCAAGACAAAGAGGGTCCGGGTTGGACCAGAGTAAGAGTAAAAGCAAACATGTATCGGGCCGGAGACCACACGACAGGAACAGGTTGGTCAGTGGGGCCTG-----GCAGGCCCCACATCCTGGGTTTGCTCTCCCATACCAATTG-CAA-------GCCTCATT-------------TCAGA----GAAAGAT---------AAGAA----------------------------------AAGAGGAAGA-ACAAAGAAGTA---ACGATTGGCGA-----TGCTTGGCCATTTTTA--AAAGTTGTAATTCAAGATACTGTGCTACCCAAAGCATTTGC-AGTTCATTAAGTAGAGAAATCTTTGGAAACTGTTTTGCTCTTCATTTCAGA--------------------AAAAAAATCCACTTGGATTCCATTTGCA i mm10.chr19 C 0 C 0 s canFam3.chr1 35319853 758 - 122678785 AGGAAATTTCT----TTTGAGGTCTGATATACTTCTTTATTTTTTATAGAGAGTATGAACAGAGTTCCTTCCCTCCATCTCCTTAGGGAGGAAAAGAACAATTTTCCTGTCATGCTGAGATGTTAGTTTGATGCTAAC-CTGTCAGCATGCCATTAGGGTGAAAATATTTTGTTGTGTTTTCTTTATTTGGTCT-CCCTGGCTCAAATGTGTACGTA------TTTGTCAACCAGTTGATGTAGTCCTTTGAGATCGTTGGGTCTGGCATT--TTCACTTTGGTTCTCCTTTGTCCAGAGCTTCCTTTCAGTGCCATGGAAGCCAGCTGCAATTTTGAGGAAGATCTCTGCAACTTTTATCAAGATAAAGAAGGTCCAGGCTGGACTCGGGTGAAAGTAAAACCAAACATGTATCGGGCTGGAGACCACACATCAGGCATTGGTAAATCA--GGAGTCTGTGCTTGTGGG---GATGCTGGGGGT---------------TGGGA-TGGTGTTCATGCTCCATCTGCCATTCTTACTCCACACCAATCAAGACAGTGACTTACaaaaaaaaaaaaaaaaaaaaaaaaaGCAAGCAAGCAAGAAAAGGCAGCTATAAAGAAGCAAAAATGATTGGTAATCGTATGTTTGGCCATTTTTTTAAAAATTGGCATTTAGGTTGCTATGCTTGCACAACAGTCTGCCAGTTCTTTAAACAGCCAAACCTTTAGAAATTATCTTGCTCTTCCCTTTAGATAGATAAGTATCTTT-----AAAAAG--CTA-TTAgattccaattaca i canFam3.chr1 C 0 C 0 a score=2124516.000000 s hg38.chr9_GL383541v1_alt 116464 655 + 171286 cgaaatct-ccagaagagacatattcctacagataaaaagcagatttcagtggttgccaggggccgtggcagagggaataagagtgttta---agtatggggttgccttt--gggtgatgaaaatgatctggaactacatagtggtgatggctgcacagcattgtgaatgctcaaaatgccgctgaattgtgcactttcaaatggata-aatggtaaattttataccatgtatattttactataatttaaaaaaTCTATTCT-G----AGGGG----AAAAGCTATTAAAAAATGTTGAG----TGGACACTTGATGGATATATTTACAAGGAGCTTTTTGAAACAGGAGTCTGAGTGCTCCTTGTGTAGGGATTACCT-----ATTAATTCAATGACAGCCTTTGTGGAGCCCAACCCAGTGGAGACAAGTGTGAAGAGCTTGATCTCTAGGAGTTCAGTGTCTCATTCACTTACTCAACACATATTTATATACTGGAGACTgaggtgagtttaccgtggagctggtgaagcttaggttccagggcccctgccttctaccag-cctgagaaaggccttgaaa-gagccctcacaattttgtgcttgtaattttgtattcttttcttagaggttgcctaacctgtagaaataaaggccctaccaa-atctATTCTGACCTTGG s panTro4.chr9 68681882 655 + 137840987 agaaatct-ccagaagagacatattcctatagataaaaagcagatttcagtggttgccaggggccgtggcagagggaataagagtgttta---agtatggggttgccttt--gggtgatgaaaatgatctggaactacatagtggtgatggctgcacagcattgtgaatgctcaaaatgccgctgaattgtgcactttcaaatggata-aatggtaaattttataccatgtatattttactataatttaaaaaaTCTATTGT-G----AGGGG----AAAAGCTATTAAAAAATGTTGAG----TGGACACTTGATGGATATATTTACAAGGAGCTTTTTGAAACAGGAGTCTGAGTGCTCCTTGTGTAGGGATTACCT-----ATTAATTCAATGACAGCCTTTGTGGAGCCCAACCCAGTGGAGACAAGTGTGAAGAGCTTGATCTCTAGGAGTTCAGTGTCTCATTCACTTACTCAACACATATTTATATACTGGAGACTgaggtgagtttaccgtggagctggtgaagcttaggttccagggcccctgccttctaccag-cctgagaaaggccttgaaa-gagccctcacaattttgtgcttgtaattttgtattcttttcttagaggttgcctaacctgtagaaataaaggccctaccaa-atctATTCTGACCTTGG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64837046 655 + 135191526 tgaaatct-ccagaagaaacatattcctacagataaaaagcagatttcagtggttgccaggggccgtggcagagggaataagagtgttta---attatggggttgccttt--gggtgatgaaaaggatctggaactacatagtggtgatggctgcacagcattgtgaatgctcaaagtgccgctgaattgtgcactttcagatggata-aatggtaaattttataccatgtatattttactataatttaaaaaaTCTATTGT-G----AGGGG----AAAAGCTATTAAAAAATGTTGAG----TGGACACTAGATGGATATATTTACAAGGAGCTTTTGGAAACAGGAGTCTAAGTGCTCCTTGTGTAGGGATTACCT-----ATTAATTTAATGACAGCCTTTGTGGAGCCCAACCCAGTGGAGACAAGTGTGAAGAGCTTGATCTCAAGGAGTTCAGTGTCTCATTCACTTATTCAACACATATTTATATACTGGAGACTgaggtgagtttaccgtggagttggtgaagcttaggttccagggcccctgccttctaccag-cctgagaaaggccttgaaa-gagccctcacaatttcgtgcttgtaattttgtattcttttcttagaggttgcctaacctgtagaaataaaggccctaccaa-atctATTCTGACTTTGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57876904 652 - 122973662 tgaaatct-ccagaagagacatattcctgcagacaaaaagcaggtttcagtggttgccaggggccgtggcagaaggaataagagtgttta---agtatggggttgccgtt--gggtgatgaaagtgatctggaactacacagtggtgatggctgcacagcattgtgaatgctcaaaatgccgctgaattgtgcactttcaaatggata-aatggtaaatcttaaaccatgtatattttactacaatttaaaaaaTCTATTAT-G----AGGGG----AAAAGCTATTAAAAAATGTTGAG----TGGACACTTGATGGATATATTTACAAGGAGCTTTTGGAAACAGGAATCTGAGTGCTCCTTGTGTAGGGATTACCT-----ATTAATTCAATGACAGCCTTTGTGGAGCCCAACCCAGTGGAGACAAGTGTGAAGAGCTTGATCTC---AAGTTCAGTGTCTTATTCACTTATTCAACACATATTTATATACTGGAGACTgaggtgagtttactgtggagctggtgaagcttaggttccagggcccctgccttctaccag-cctgaaaaaggcctcgaaa-gagccctcacaatttcgtgcttctaattttgtattcttttcttagaggttgcctaacctgtagaaataaaggccctaccaa-atctATTCTGATCTTGG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79806577 656 + 112192347 tgaaatct-ccagaaaagacatattcccacagataaa---aagatttcagtggttgccaggggccgtggcagagggaataagagtgtttaatgaatatggggttgccttt--gggtgatgaaaatgatctggaactacatagtggtgatggttgcacagcattgtgaatgctcaaaatgccactgaattgtgcactttcaaatggtta-aatggtaacttttataccatgtatattttactataatttaaaaaaTCTATTGTGG----AGGGG----AAAAGCTATTAAAAAATGTTGAG----TGGACACTTGATGGATATACTTAAAAGGAGCTTTTGGAAACAGGAGTCTGAGTGCTCCTTGTGTAGGGATTACCT-----ATTAATTTAATGATAGCCTTTGTGGAGCCCAACCCAGTGTAGACAAGTGCGAAGAGCTTGATCTCAAGGAGTTCAGCGTCTCATTCACTTATTCAACACATATTTATATACTGGAGACTgaggtgagtttaccatggagctggtgaagcttaggttccagggcccctgccttgtaccagccctgagaaaggccttgaaa-gagccctcacaatttcgtgcttgtaattttgt-ttcttttcttagaggttgcctaacctgtagaaataaaggccctacCGA-CTCTATTCTGACCTTGG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80886582 656 + 112612857 tgaaatct-ccagaaaagacatattcccacagataaa---aagatttcagtggttgccaggggccgtggcagagggaataagagtgtttaatgaatatggggttgccttt--gggtgatgaaaatgatctggaactacatagtggtgatggttgcacagcattgtgaatgctcaaaatgccactgaattgtgcactttcaaatggtta-aatggtaacttttataccatgtatattttactataatttaaaaaaTCTATTGTGG----AGGGG----AAAAGCTATTAAAAAATGTTGAG----TGGACACTTGATGGATATACTTAAAAGGAGCTTTTGGAAACAGGAGTCTGAGTGCTCCTTGTGTAGGGATTACCT-----ATTAATTTAATGATAGCCTTTGTGGAGCCCAACCCAGTGTAGACAAGTGCGAAGAGCTTGATCTCAAGGAGTTCAGCGTCTCATTCACTTATTCAACACATATTTATATACTGGAGACTgaggtgagtttaccatggagctggtgaagcttaggttccagggcccctgccttgtaccagccctgagaaaggccttgaaa-gagccctcacaatttcgtgcttgtaattttgt-ttcttttcttagaggttgcctaacctgtagaaataaaggccctacCGA-CTCTATTCTGACCTTGG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76936085 660 + 107442819 TGAAATCT-CCAGAAGAGACATATTCTCACAGATAAAAAGAAGAtttcagtggttgccaggggccgtGGCAGAGGGAATAAGAGTGTTTAATGAATATGGGGTTGCCTTT--GGGTGATGAAAATGATCTGGAACTacatagtggtgatggttgcacagcattgtgaatgctcaaaatgccactgaattgtgcactttcaAATGGTTA-AATGGTAACTTTTATACcatgtatattttactataatttaaaaaatctattgtgG----AGGGG----AAAAGCTATTAAAAAGTGTTGAG----TGGACACTTGATGGATATACTTAAAAGGAGCTTTTGGAAACAGGAGTCTGAGTGCTCCTTGTGTAGGGATTACCT-----ATTAATTTAATGATAGCCTTTGTGGAGCCCAACCCAGTGTAGACAAGTGCGAAGAGCTTGATCTCAAGGAGTTCAGTGtctcattcacttattcaacacatatttatatactggagactgaggtgagtTTACCATGGAGCTGGTGAAGCTTAGGTTCCAGGGCCCCTGCCTTGTACCAGCCCTGAGAAAGGCCTTGAAA-GAGCCCTCACAATTTCGTGcttgtaattttgtattcttttcttagAGGTTGCCCAACCTGTAGAAATAAAGGCCCTACCGA-CTCTATTCTGACCTTGG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81200562 642 + 108555830 tgaaatct-ccagaagagacatattcccacagataaaaagaagatttcagtggttgccaggggccatggcagagggaataagagtgtttaatgaatatggggttgccttt--gggtgatgaaaatgatctggaactacatagtggcaatggttgcatagcattgcgaatgctcaaaatgccactgaattgtgcactttcaaatggtta-aatggtaactttcataccatgtatattttactataatttaaaaaaTCTATTGTGG----AGGGG----AAAAGCTATTAAAAAATGTTGAG----TGGACACTTGATGGATATACTTAAAAGGAGCTTTTGGAAACAGGAGTCTGAGTGCTTCTTGTGTAGGGATTACCT-----ATTAATTTAATGATAGCCTTTGTGGAGCCCAACCCAGTGTAGACAAGTGTGAAGAGCTTGATCTCAAGGAG-----------------TTATTCAACACATATTTATATACTGGAGACTgaggtgagtttaccatggagctggtgaagcttaggttccagggcccctgccttgtaccagccctgagaaaggccttgaaa-gagccctcacaatgttgtgcttataattttgt-ttcttttcttagaggttgcctaacctgtagaaataaaggccctacCGA-CTCTATTCTGACCTTGG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111434345 652 - 210400635 tgaaatctcccagaagagacatattcccacagataaaaagtagatttcagtggttgccaggggctggggcagagggaataagagtgtttaatgagtatggtgttgcctgt---ggtgatgaaaatgatgtggaactacacagtggtgatggctgcacagcattgtgaatgctcacaatgccactaaactgtactctttaaaatggtta-aatggtagattttataccatttttattttattaaaatttttaaaaTC---TGTGG----AGGGG----AAAAGCTATTAAAAA-TGTTGCA----TGGACATTTGATGGATATATTTATAAAGAGCTTTTGGAAACAAGAGTCTGA--GCTCTTTGTGTAGGGACTACCT-----ATTATTAAATTGACAGATTTT-TGGAGCCCATACTAGTGGAAACAAGTGTGAAGAGCTTGATCTCAAAAAGTTCCATGTCTCTTTCACTTATTCAACACATGTTTATATCCTGGGGACTggggagagtttaccatggagctggtgaagcttaggttccagggaccctgccttataccagccctgagaaaggccttgaaa-gagccctcaccatttaatacttgtaattttgtattcttttcttagaggttgcctaactagtag-aataaaggccctaccaa-gtctATTCTCACCTTGG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35320611 665 - 122678785 taaaacat-ccagaaaatgcaaatcgttagaaacagaaagccaattct--tggtggccaagg-----ggctggggagttac---tgtttaatgggtaaaaagcttcctttgggggtgacgaaaatattttggagctggagagtggcactcgttgcccaacattgtgaatgtactaaatgccactgaattgtagactttaaaatggttacaatggtaaattgtatgttatgtgtattttactcaatGAAAAATAATTTTGTACGGCACTAAAGGCTATAAAAACTATTGGAAAAGGCTGGGGGTAGGGGCACTTGATGGTTATGTCTACAAAGAACTGTAAGAAA-ACCAATTTGAGCTC-CCCTGTGTAAGGATTAGCTACCTAATTACTTTGACAGCATCCCCTGTGAAGCCCACTTCTGTAGAGACTGGTGCAAAGAGCTTG-TTTCAAGGG--TTAGTGTCTAGTTCATTTATTCAATGGCTATTTATACATTGGGCACTG-GGTGTGCTCACCAC-ACTCTGATGACACTTCAATTTCAGAGTAGCGTACTCACACAGGCCCTAGGAAGGGCCTTAAAAGGGGCCCTCACAATTTTATACTTGTAATCATGACTTCTTTTCTTACAGGTTGCTTAACTTATAGAAATACAGGCACTACAAAGACCTATTGTCACCTTGG i canFam3.chr1 C 0 C 0 e mm10.chr19 38078517 0 - 61431566 C a score=74664.000000 s hg38.chr9_GL383541v1_alt 117119 22 + 171286 GCTGATTAACTGGAAAATCATC s panTro4.chr9 68682537 22 + 137840987 GCTGATTAACTGGAAAATCATC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64837701 22 + 135191526 GCTGATTAACTGGAAAATCATC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57877556 22 - 122973662 GCTGATTAACTGGAAAATCATC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79807233 22 + 112192347 GCTGATTAACTGGAAAATCATC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80887238 22 + 112612857 GCTGATTAACTGGAAAATCATC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76936745 22 + 107442819 GCTGATTAACTGGAAAATCATC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81201204 22 + 108555830 GCTGATTAACTGGAAAATCATC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111434997 22 - 210400635 GCTGATTAACTGGAAAATCATC i calJac3.chr1 C 0 C 0 e mm10.chr19 38078517 0 - 61431566 C e canFam3.chr1 35321276 0 - 122678785 C a score=252407.000000 s hg38.chr9_GL383541v1_alt 117141 73 + 171286 TCTAGAGAACCATTTGAATTCTGGGAGCAGTGAACTGATGAAACGGGGAACTGTTTAGGGACAAAAAGACTCA s panTro4.chr9 68682559 73 + 137840987 TCTAGAGAACCATTTGAATTCTGGGAGCAGTGAACTGATGAAACGGGGAGCTGTTTAGGGACAAAAAGACTCA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64837723 73 + 135191526 TCTAGAGAACCATTTGAATTCTGGGAGCAGTGAACTGATGAAACGGGGAGCTGTATAGGGACAAAAAGACTCA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57877578 73 - 122973662 TCTAGAGAACCATTTGAATTCTGGGAGCAGTGAACTGATGAAATGGGGAGCTGTTTAGGGACAAAAAGACTCA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79807255 72 + 112192347 TCTAGAGAACCATTTGAGTTCTGGGAGCAGTGAACTGATGAAATGGGGACCTGTTT-GGGACAAAAAGACTCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80887260 72 + 112612857 TCTAGAGAACCATTTGAGTTCTGGGAGCAGTGAACTGATGAAATGGGGACCTGTTT-GGGACAAAAAGACTCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76936767 72 + 107442819 TCTAGAGAACCATTTGAGTTCTGGGAGCAGTGAACTGATGAAACGGGGACCTGTTT-GGGACAAAAAGACTCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81201226 73 + 108555830 TCTAGAGAACCATTTGAGTTCTGGGAGCAGTGAACTGATGAAACGGGGAGCTGTTTAGGGACAAAAAGACTCA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111435019 71 - 210400635 TCTAGAAAATCATTTGAGTTCTGGGAGCAGTGAGCTGATGAAATGGGAAGCTGTTTAAGGACAAAAAGA--CA i calJac3.chr1 C 0 C 0 s canFam3.chr1 87359523 71 + 122678785 TCTAGAGAAATATTTGAGTTCTGGGAGCAGTGACATGATGAAACAGGAAGCTGATAATGGACAGAA--CCTCA i canFam3.chr1 n 0 I 8 e mm10.chr19 38078517 0 - 61431566 C a score=28764.000000 s hg38.chr9_GL383541v1_alt 117214 8 + 171286 CCATACTC s panTro4.chr9 68682632 8 + 137840987 CCATACTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64837796 8 + 135191526 CCATACTC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57877651 8 - 122973662 CCATAATC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79807327 8 + 112192347 CCATACTC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80887332 8 + 112612857 CCATACTC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76936839 8 + 107442819 CCATACTC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81201299 8 + 108555830 CCATACTC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111435090 8 - 210400635 CCCTACTC i calJac3.chr1 C 0 C 0 s canFam3.chr1 35321276 8 - 122678785 CCAGACTC i canFam3.chr1 C 0 C 0 e mm10.chr19 38078517 0 - 61431566 C a score=158525.000000 s hg38.chr9_GL383541v1_alt 117222 44 + 171286 TCAGTTTGTCAATTTTCAAAGTAATAAAACATTCAAGCGGATTA s panTro4.chr9 68682640 44 + 137840987 TCAGTTTGTCAATTTTCAAAGTAATAAAACATTCAAGCGGATTA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64837804 44 + 135191526 TCAGTTTGTCAATTTTCAAAGTAATAAAACATTCAAGTGGATTA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57877659 44 - 122973662 TCAGTTTGTCAATTTTCAAAGTAATAAAACATTCAAGTGGATTA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79807335 44 + 112192347 TCAGTTTGTCAATTTTCAAAGTAATAAAACATTCAAGTGGACTA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80887340 44 + 112612857 TCAGTTTGTCAATTTTCAAAGTAATAAAACATTCAAGTGGACTA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76936847 44 + 107442819 TCAGTTTGTCaattttcaaagtaataaaaCATTCAAGTGGACTA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81201307 44 + 108555830 TCAGTTTGTCAATCTTCAAAGTAATAAAACATTCAAGTGGACTA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111435098 44 - 210400635 TCAGTTTGCCAATTTTCAAGGCAATAAAACATTCAAGTGGACTA i calJac3.chr1 C 0 C 0 s canFam3.chr1 87359602 44 + 122678785 TCAATGCTTCAATTTCTAAAGCAAGAAAACCATCAAGTGggctg i canFam3.chr1 I 8 T 21811 e mm10.chr19 38078517 0 - 61431566 C a score=194198.000000 s hg38.chr9_GL383541v1_alt 117266 64 + 171286 ACTCctgggg-aatacaa--------------------------------tagtgaacgaatctgaaatgaat-cccaccttcactggcagacaatct s panTro4.chr9 68682684 64 + 137840987 ACTCctgggg-aatacaa--------------------------------tagtgaacgaatctgaaatgaat-cccaccttcactggcagacaatct i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64837848 64 + 135191526 ACTCctgggg-aatacaa--------------------------------cagtgaacgaatctgaaatgaat-cccaccttcactggcagacaatct i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57877703 64 - 122973662 ACTCctgggg-aatacaa--------------------------------tagtgaatgaatctgaaatgaac-cccaccttcactggcagacaatct i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79807379 97 + 112192347 ACTCCTGGGGAAATACAATAGTGAACAAATCTGAAGTGAATCCTACAATCTagtgaacaaatctgaagtgaat-cctaccttcactggcagacaatct i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80887384 65 + 112612857 ACTCctggggaaatacaa--------------------------------tagtgaacaaatctgaagtgaat-cctaccttcactggcagacaatct i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76936891 65 + 107442819 ACTCCTGGGG-AATACAA--------------------------------TAGTGAACAAGTCTGAAGTGAATCCCCACCTTCACTGGCAGACAATCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81201351 64 + 108555830 ACTCctgggg-aatacaa--------------------------------tagtgaacaaatctgaagtgaat-cccaccttcactggcagacaatct i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111435142 64 - 210400635 ATTCctgggg-aatataa--------------------------------tagtgaacaaatctgaaattaat-cccaccttcactggccagatgtct i calJac3.chr1 C 0 C 0 s canFam3.chr1 35321284 58 - 122678785 ACTCCTGGAG-GATACAC--------------------------------TAGTGAACAGATCAG------GT-CCTGTTCTCACTGGCTAGCAATAA i canFam3.chr1 C 0 C 0 e mm10.chr19 38078517 0 - 61431566 C a score=272900.000000 s hg38.chr9_GL383541v1_alt 117330 76 + 171286 tttcaaagggcaagagaaacattagacaaatatatacgcaaac-aaactta----taa-gcaca----------ggttgtggtaag---tgctgt s panTro4.chr9 68682748 77 + 137840987 tttcaaagggcaagagaaacattagacaaatatatacacaaacaaaactta----taa-gcaca----------ggttgtggtaag---tgctgt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64837912 76 + 135191526 tttcaaagggcaagagaaacattagacaaatatatacacaaac-aaactta----taa-tcaca----------ggttgtggtaag---tgctgt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57877767 76 - 122973662 tttcaaagggcaagagaaacattaaacaaatatatacacaaac-aaactta----taa-tcaca----------ggttgtggtaag---tgctgt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79807476 79 + 112192347 tttcagtgggcaagagaaacattagacaaatacatacacaaac-aaactta----taa-tcaca----------ggttgtggcaagtgctgctgt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80887449 79 + 112612857 tttcagtgggcaagagaaacattagacaaatacatacacaaac-aaactta----taa-tcaca----------ggttgtggcaagtgctgctgt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76936956 79 + 107442819 TTTCAGTGGGCAAGAGAAATATTagacaaatacatacacaaac-aaaCTTA----TAA-TCACA----------GGTTGTGGCAAGTGCTGCTGT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81201415 79 + 108555830 tttcagtgggcaagagaaacattagacaaatacatacacaaac-aaactta----taa-tcaca----------ggttgtggcaagtgctgctgt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111435206 76 - 210400635 tttcagtgggcaagagaaacattagacaaatgtatatgcaaac-aacctta----taa-tcaca----------gagtgtggtaag---tgctgt i calJac3.chr1 C 0 C 0 s mm10.chr19 38078517 87 - 61431566 TTTCAATGAGCAAAGGAAATGATAGATAAACATATAGACAAAT-GAACATAATCGTAA-GCATAGCAGGGGGTGGAGTGGGGCGAG------GGG i mm10.chr19 C 0 C 0 s canFam3.chr1 35321342 77 - 122678785 TCTCAATGAGCAGGAGAAGTGTTAGACAATTATATACACAAAT-AAACTTA----TAATTTACA----------CGTTGCGGTATG---TGCTAT i canFam3.chr1 C 0 C 0 a score=1945119.000000 s hg38.chr9_GL383541v1_alt 117406 583 + 171286 cagggaggaaaaacttttcctctaccctcttgggttccatgtttggacctgagaattaaagtgatgtaagacagattaacaagaa-aaaaatacaa-attttattta-atattttgacttgcacttgggagccttcataaaaacaatgaagac-----ccaaagaagcagataggcctgagagcttcaacaccattttaaacaaaggatgataaaattgcggagaagtagcaagacaaaaaa-------gggtcag---ggggcttaagtttccaggggcagtaaattgtgggaaagtgactaggaaatatatggaggaaac-aatggaagatgagggttatgttagtaggtttgtttgtacagatccattttggtgtcaactcccagtctttagggacagaatgttcctccctttctgggacagggagaacaccttgttcacaggaaattttatgacctgcttttaagtataatagaaaaggggaggtcaaaggatccttcctgcctctgctatttctcaagtgactttacctcaaaataatcaaaatgccaaagtgacatagtttggggtggcatgttctgatccccttctttcacagta s panTro4.chr9 68682825 582 + 137840987 cagggaggaaaaacttttcctctaccctcttgggttccatgtttggacctgagaattaaagtgatgtaagacagattaacaagaa-aaaaatacaa-attttattta-atattttgacttgcacttgggagccttcataaaaacaatgaagac-----ccaaagaagcagataggcctgagagcttcaacaccattttaaacaaaagatgataaaattgcggagaagtagcaagacaaaaaa-------gggtcag---ggggcttaagtttccaggggcagtaaattgtgggaaagtgactaggaaatatatggaggaaac-aatggaagatgagggttatgttagtaggtttgtttgtacagatccattttggtgtcaactcccagtctttagtgacagaatgttcttccctttctggcacagggagaacaccttgttcacaggaaattttatgacctgcttttaagtataatagaaaaggggaggtcaaaggatccttcctgcctctgctatttctcaagtgactttacctcaaaataatcaaaatgccaaagtgacatagttt-gggtggcatgttctgatccccttctttcacagta i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64837988 580 + 135191526 cagagaggaaaaac--ttcctctaccctcttgggttccatgtttggacctgagaattaaagtgatgtaagacagattaacaagaa-aaaaatacaa-attttattta-atattttgacttgcacttagaagccttcataaaaacaatgaagac-----acaaagaagcagataggcctgagagcttcaataccattttaaacaaaggatgataaaattgtggagaagtagcaagacaaaaaa-------gggtc-g---ggggcttaagtttccaggggcagtaaattgtgggaaagtggctaggaaatatatggaggaaac-aatggaagatgaaggttatgttagtaggtttgtttgtacagatccattttggtgtcaactcccagtctttagtgacagaatgttcttccttttctgggacagggagaacaccttgttcacaggaaattttatgacctgcttttaagtataatagaaaaggggaggtcaaagggtccttcctgcctctgctatttctcaagtgactttaccttaaaataatcaaaatgccaaagtgacatagtttggggtggcatgttctgatccccttctttcacagta i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57877843 585 - 122973662 cagggaggaaaaacttttcctctaccctcttgggttccatgtttggacctcagaattaaagtgatataagacagattaacaagaa-aataatacaa-attttattta-atatttttacttgcacttgggagccttcataaaaacaatgaagac-----ccaaagaagcagataggcctgagagcttcaataccattttaaacaaaggatgataaaattgtggagaagtagcaagacaaaaaa-----aggggtcag---ggggcttaagtttccaggggcagtaaattgtgggaaagtgactaggaaatatatggaagaaac-aatggaagatgagggttatgttagtaggtttgtttgtacagatccattttggtgtcaactcccagtctttagtgacagaatgttcttccctttctgggacagggagaacaccttgttcataggaaattttatgacctgcttttaagtataacagaaaaggggaggtcaaagggcccttcctgcctctgctatttctcaagtgactttacctcaaaataatcaaaatgccaaagtgacatagtttggggtggcatgttctgatccccttctttcacagta i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79807555 592 + 112192347 cagggaggaaaaacttttcctctaccctcttaagttccatgtttggacctgagaattaaagcgatgtaagacagattagcaagaaaaaaaacacaa-attttattta-atatttttacttgtacttgggagccttcataaaaacaatgaagac-----ccaaagaagcagataggcctgagagcttcaataccattttaaacaaaggataataaaattgtggagaagtagcaggacaaaaaagaaaggggggttag---ggggcttaagtttccaggggcagtaaattgtgggaaagtgactaggaaatatatgaaggaaactaatggaagatgagggttatgttagtaagtttgtttgtacagatccattttggtgtcaactctcagtctttagtgacagaatgttcttccctttctgggacagggagaacaccttgttcgtaggaaattttatgacctgctcttaagtataatagaaaaggggaggtcaaagggtccttcctgcctctgctgtttctcaagtgactttacctcaaaataatcaaaatgccaaagtgacatagtttggggtggcatgttctgatccccttctttcacagta i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80887528 592 + 112612857 cagggaggaaaaacttttcctctaccctcttaagttccatgtttggacctgagaattaaagcgatgtaagacagattagcaagaaaaaaaacacaa-attttattta-atatttttacttgtacttgggagccttcataaaaacaatgaagac-----ccaaagaagcagataggcctgagagcttcaataccattttaaacaaaggataataaaattgtggagaagtagcaggacaaaaaagaaaggggggttag---ggggcttaagtttccaggggcagtaaattgtgggaaagtgactaggaaatatatgaaggaaactaatggaagatgagggttatgttagtaagtttgtttgtacagatccattttggtgtcaactctcagtctttagtgacagaatgttcttccctttctgggacagggagaacaccttgttcgtaggaaattttatgacctgctcttaagtataatagaaaaggggaggtcaaagggtccttcctgcctctgctgtttctcaagtgactttacctcaaaataatcaaaatgccaaagtgacatagtttggggtggcatgttctgatccccttctttcacagta i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76937035 591 + 107442819 CAGGGAGG-AAAACTTTTCCTCTACTCTCTTAAGTTCCATGTTTGGACCTGAGAATTAAAGCGATGTAAGACAGATTAgcaagaagaaaaacacac-attttattta-atatttttaattgtacttgGGAGCCTTCATAAAAacaatgaagac-----ccaaagaagcaGATAGGCCTGAGAGCTTCAATACCATTTTAAACAAAGGATAATAAAATTGTGGAGAAGTAGCAGGACAAAAAAGAAAGGGGGGTTAG---AGGGCTTAAGTTTCCAGGGGCAGTAAATTGTGGGAAAGTGACTAGGAAATATATGAAGGAAACTAATGGAAGATGAGGGTTATGTTAGTAAGTTTGTCTGTACAGATCCATTTTGGTGTCAACTCCCAGTCTTTAGTGACAGAATGTTCTTCCCTTTCTGGGACAGGGAGAGCACCTTGTTCGTAGGAAATTTTATGACCTGCTTTTAAGTATAATAGAAAAGGGGAGGTCAAAGGGtccttcctgcctctgctgtTTCTCAAGTGACTTTAcctcaaaataatcaaaatgccAAAGTGACATAGTTTGGGGTGGCATGTTCTGATCCCCTTCTTTCacagta i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81201494 591 + 108555830 cagggaggaaaaacttttcttctaccctcttaagttccatgtttgtacctgagaattaaagcgatgtaagacagattagcaagaa-aaaaccacaa-attttattta-gtatttttaattgtacttgggagccttcataaaaacaatgaagac-----ccaaagaagcagataggcctgagagcttcaataccattttaaacaaaggataataaaattgtggagaagtagcaggacaaaaaagaaaggggggttag---ggggcttaagtttccaggggcagtaaattgtgggaaagtgactaggaaatatatgaaggaaactaatggaagatgagggttatgttagtaagtttgtttgtacagatccattttggtgtcaactcccagtctttagtgacagaatgttcttccctttctgggacagggagaacaccttgtttgtaggaaattttatgacctgcttttaagtataatagaaaaggggaggtcaaagggtcctttctgcctccgctgtttctcaagtgactttacctcaaaataatcaaaatgccaaagtgacatagtttggggtggcacgttctgatccccttctttcacagta i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111435282 591 - 210400635 cagggaggaaaaccttttcctctacccccttaggttccatgtttggacctgagaattaaagtaatgtaagacagagtaacaataa-aaaaatacaa-attttattta-atatatttacctgcacttgagagccttcataaaaacaatgaagat-----ccaaagaagcagataggcctgagagcttaaataccattttaaacaagggatggtaaaattgtggagaaataacaagacaaaaaa---aagggggtgagggtggggctgaagtttccagaggcagtgaattgtgggaaagtgactaggaaatatatggaggaaactaatggaagaaaagggttattttagtagtttggttcacacagatccattttgatgtcaactcccagtctttagtgacataatgttcttccctttctggtacagggagaacacctggttcatgggaaattttatgacctgcttttaagtatcataaaaagggagatgtcagagggtccttcctgcctctgctgtttctcaagtgactttacctcagaataatcaatatgccaaagtgacatatttgggggtggcatgttctgatctccttctttcacagta i calJac3.chr1 C 0 C 0 s mm10.chr19 38078604 542 - 61431566 TAGGGTGGGGGCacctgtcctcttctcttgtactttctgtagctggggctgaaaattaaacagacaagaagcagactaccaagag-aaaactgtagcattccaacaacatatttttatatgcacatgggagccttcacaggaaaatagaaaatgaaaactagaaatatacataggcctgaaagcttatgtatcatttttaacaaagaatggtaaagttgtgga-aagaagcaagaccaagga------------aa---ggg------------agagagagtcaactgtgaggtggtgactgggaaacctatggagcaaactaatgaaaagcaagggct-tcataggaggtttgtttgtacagatccatttcagcgt--agtctcaggctct----acaacaccggcatcct------ggacaggatgtggcccaggctcataggaactttgatggcctgctttag------atagaaagtgagtgggcacagagcccttcctgcctctactg-tcctccagtgccttcagctcaaaatcatcaaggtgccagagcagcata-tttggggtgatctgttctgatggccttc---------- i mm10.chr19 C 0 C 0 e canFam3.chr1 35321419 0 - 122678785 C a score=2286757.000000 s hg38.chr9_GL383541v1_alt 117989 640 + 171286 gaaagaaatgaagagtgagctctgagacagaatagagggaagaatctaatttgggttcaggattcagggaaattttctctgagggaagctgccattagctgggagagtgggagtgacccaggcagagggaacaa-catctgtgaaggcctcgaatttggaaagagctggtcacaccacagaataggaaggtctgtatggctgcaccgt--ggggaggaatggtgacgaggagaatggaggaaaatgatgtcagagagggagatagattctgggtgtggcaggccacaggaagcatttggaattttattatagaggacatgagaagccactgagaggttttaagcagaaaaa-aca--------------------------------cag-atgaaactgaggtttc--------------aaaaaggtttttctggctgttgtatGGCCATCCATAAtagtctgctcaggcagccataagaaaataccacagactgggtggcttaaacaacagacat-tatttcctcacagttctggaggctgtgagttcaaaatcaaggtgccatcaggg-tggtttctggtgaggggtctct----tcctggcttgcagatg---gccaccttatcct-gtgtcctcatatgtcct---cttggtgtat--------gGAGGCATAGAGAGCTCTGGCATGTCTTTC------------------TCTTCTTTTGAG s panTro4.chr9 68683407 636 + 137840987 gaaagaaatgaagagtgagctctgagacagaatagagggaagaatctaatttgggttcaggattcagggaaattttctctgagggaagctgccattagctgggagagtgggagtgacccaggcagagggaacaa-catctgtgaaggcctcgaatttggaaagagctggtcacaccgcagaataggaagatctgtatggctgcaccgt--ggggaggaatggtgatgaggagaatggaggaaaatgatgtcagagaggg----agattctgggtgtggcaggccacaggaagcatttggaattttattatagatgacatgagaagccactgagaggttttaagcagaaaaa-aca--------------------------------cag-atgaaactgaggtttc--------------aaaaaggtttttctggctgttgtatGGCCATCCATAAtagtctgctcaggcagctataagaaaataccacagactgggtggcttaaacaacagacat-tatttcctcacagttctggaggctgtgagttcaaaatcaaggtgccatcaggg-tggtttctggtgaggggtctct----tcctggcttgcagatg---gccaccttatcct-gtgtcctcatatggcct---cttggtgtat--------gGAGGGATAGAGAGCTCTGGCATGTCTTTC------------------TCTTCTTTTGAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64838568 640 + 135191526 gaaagaaatgaagagtgagctctgagacagaatagagggaagaatctaatttgggttcaggattcagggaaggtttctctgagggaagctgccgttagctgggggagtgggagtgacccaggcagagggaacaa-catctgtgaaggcctcgaatttggaaagagctggtcacaccacagaataggaaggtctgtatggctgcaccgt--ggggaggaatggtgacgaggagagtggaggaaaatgatgtcagagagggagatagatcctgggtgtggcaggccacaggaagcatttggaattttattatagaggacatgagaagccactgagaggttttaagcagaaaaa-aca--------------------------------cag-atgaaacttaggtttc--------------aaaaaggttgttctggctgttgtatGGCCACCCATAAtagtctgctcaggcagccataacaaaataccacagactgggtggcttaaacaacagacat-tatttcctcacagttctggaggctgtgagttcaaaatcaaggtgccattaggg-tggtttctggtgaggggtctct----tcctagcttgcagatg---gccaccttatcct-gtgtcctcatatggcct---cttggtgtat--------gGAGGGAGAGAGAGCTCTGGCATGTCTTTC------------------TCTTCTTTTGAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57878428 640 - 122973662 gaaagaaatgaagagtaagctctgagacagaatagagggaagaatctaatttgggttcaggattcagggaaggtttctctgagggaagctgccattagctgggagagtgggagtgacccaggcagaggtaacaa-catctgtgaaggcctcgaatttggaaagagctggtcacgccacagaataggaagatctgtatggctgcaccgt--ggggaggaatggtgacgaggagaatggaggaaaatgatgtcagagagggagatagatcctgggtgtggcaggccacaggaagcatttggaattttattatagaggacatgagaagccactgagaggttttaagcagaagaa-aca--------------------------------cag-atgaaacttaggtttc--------------aaaaaggttgttctggctgttgtatGGCCACCCATAAtagtctgctcaggcagccattacaaaataccacagactgggtggcttaaacaacagacat-tatttcctcacagttctggaggccatgagttcaaaatcaaggtgccatcaggg-tggtttctggtgaggggtctct----tcctagcttgcagatg---gccaccttatcct-gtgtcctcatatggcct---cttggtgtat--------ggaggaagagagagctctggcatgtctttC------------------TCTTCTTTTGAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79808147 672 + 112192347 gaacgaaatgaagagagagctctgagagagaatagagggaagaatctaattttggttcagcattcagggaaggtttctctgaggaaagctgctgttagctgggatagtgggcgtgacccgggcagagggaacaa-catctgtgaaggccttgaatttggaaagagctggtcacaccacagaataggaaggtctgtatggctgcaccgt--gaggaggaatggtgaggaggagaatggaggaaaatgatgtcagagagggagctagatcctgggtgtggcaggccacaggaagcatttggaattttattatagaggacatgagaagccactgacagtttttaagcggaaaaa-acatgagaagccactgacagtttttaagcggttcccag-atgaaactcaggtttc--------------aaaaaggttgttctggctgttgtACGGCCACCCAtaatagtctgctcaggcagccataacaaaataccacagattgggtggcttaaacaacagacat-tatttcctcacagttctggaggccatgagttcaaaatcaaggtgccatcaggg-tggtttctggtgaggggtctct----tcctggcttgcagatg---gacaccttatcat-gtgtcctcacatggcct---cttggtgtat--------ggagggagagagagctctggcatatctttC------------------TCTTCTTTTGAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80888120 640 + 112612857 gaaagaaatgaagagagagctctgagagagaatagagggaagaatctaattttggttcagcattcagggaaggtttctctgaggaaagctgctgttagctgggatagtgggcgtgacccgggcagagggaacaa-catctgtgaaggccttgaatttggaaagagctggtcacaccacagaataggaaggtctgtatggctgcaccgt--ggggaggaatggtgaggaggagaatggaggaaaatgatgtcagagagggagctagatcctgggtgtggcaggccacaggaagcatttggaattttattatagaggacatgagaagccactgacagtttttaagcggaaaaa-aca--------------------------------cag-atgaaactcaggtttc--------------aaaaaggttgttctggctgttgtACGGCCACCCATAAtagtctgctcaggcagccataacaaaataccacagattgggtggcttaaacaacagacat-tatttcctcacagttctggaggccatgagttcaaaatcaaggtgccatcaggg-tggtttctggtgaggggtctct----tcctagcttgcagatg---gacaccttatcat-gtgtcctcacatggcct---CTTGGTATAT--------GGAGGGAGAGAGAGCTCTGGCATATCTTTC------------------TCTTCTTTTGAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76937626 640 + 107442819 gaaagaaatgaagagagagctctgagagagaatagagggaagaaTCTAATTTTGGTTCAGCATTCAGGGAAAGTTTCTCTGAGGAAAGCTGCTGTTAGCTGGGATAGTGGGCGTGACCCGGGCAGAGGGAACAA-CATCTGTGTAGGCCTCGAATTTGGAAAGAGCTGGTCACACCACAGAATAGGAAGGTCTGTATGGCTGCACCGT--GGGGAGGAATGGTGAGGAGGAGAATGGAGGAAAATGATGTCAGAGAGGGAGCTAGATCCTGGGTGTGGCAGGCCACAGGAAGCATTTGGAATTTTATTATAGAGGACATGAGAAGCCACGGAGAGGTTTTAAGCAGaagaa-aca--------------------------------cag-atgaaacttAGGTTTC--------------AAAAAGGTTGTTCTGGCTGTTGTACGGCCACCCATAATAGTCTGCTCAGgcagccataacaaaataccacagattgggtggcttaaacgaCAGAcat-tatttcctcacagttctggaggccgtgagttcaaaatcaaggtgccatcaggg-tggtttctggtgaggggtctct----tcctagcttgcagatg---gccaccttatcat-gtgtcctcacatggcct---cttggtgtag--------ggagggagagagagctctggcatgtctttc------------------tcttcttttgag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81202085 640 + 108555830 gaaagaaatgaagagagagctctgagagagaatagagggaagaatctaattttggttcagcattcagggaaagtttctctgaggaaagctgccgttagctgggatagtgggcgtgacctgggcagagggaacaa-catctgtgaaggcctcgaatttggaaagagctggtcacaccacagaataggaaggtctgtatgactgcatcgt--ggggaggaatggtgaggaggagaatggaggaaaatgatgtcagagagggagctagatcctgggtgtggcaggccacaggaagcatttggaattttattatagaggacatgagaagccactgagagtttttaagcagaaaaa-aca--------------------------------cag-atgaaacttaggtttc--------------aaaaaggttgttctggctgttgtACGGCCACCCAtaatagtctgctcaggcagccataacaaaataccacagattgggtggcttaaacaacagacat-tatttcctcacagttctggaggccatgagttcaaaatcaaggtgccatcaggg-tggtttctggtgaggtgtctct----tcctagcttgcaggtg---gacaccttgtcat-gtgtcctcacatggcct---cttggtgtat--------ggagggagagagagctctggcatgtctttC------------------TCTTCTTTTGAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111435873 641 - 210400635 aaacaaaatgaagagtgaactctgagagataatagagagaagaatctaattttggttttggattcagggaagctttctctgagggaagctgccattagctgggatagtgggagtgacgcaagcagagggagcaa-catctgtgaaggcctcaaatttggaaagagctggtcacaccacagaataggaaggtctgtatggctgcaccgt--gaggaggaagggtggggaggagaatggaggaaaatgatgttagagagggagatagatcctgggtgtggcaggccacaggaagcatttggaattttattatagaggacatgagaagccactgagaggttttaagtggaaaaataga--------------------------------cag-atgaaacttaggtttc--------------aaaaaggttgttctggctgtcatatGGCCGCCCAtaatagtctgctcaggctgccataccaaaataccacagactgggtggtttgaacaacagaaat-gatttcttcacagttctgaaggtcgtgagttcaaaattaaggtgccatcaggg-tggtttctggtaagggctctcc----tcctagcttgcagatg---gccaccttctcat-gtgtcctcatgtggcct---ttttatgtat--------ggagggagagagagctccagtatgtctttc------------------tcttcttTTGAG i calJac3.chr1 C 0 C 0 s mm10.chr19 38079146 565 - 61431566 ---------------GGTGCTCTGAGAGAGAATAGTGGAAGGA----CATTTTAGCTAGGGATTTAAGAGTAGTCTCTACAATGGAAGCTAC---------------------------------AGAGGACAAGCATCTATGAGGTCTCTCAGTGTAGAGACGGGTGGCCAGTCCAA-------------CTGGCAGTCTGC-CCGTAGAGAGAGGAACGGTGTGGAAGA-------------------TGGAGAGGATAGCAGACGGTGGATTTGAAAGAGCAGAGGAAGCACTGGGGG--TTATTAGAAAGGCAGTAAGAAGCCACTGAAAGGCTGTAAGCAAGAAAC-AGA--------------------------------AAG-ATGATATTCAGGTTACaaaaaaaaaaaaaaaaaaaaaaaaGTCTGGCTGTCTTGTGGCCACCCATATTTGTCCATT------GCATTCacaaagtaccgcagactgg--ggcttacacaacagctgc-t-tttcgtcatg--tcatgaggctggaaggctggaatc----------caggG------CCTGGTGAGGCTTTCCTGGGAGTCTGGCTTGCGGGCG---TA-GTCCTATCAC--TGTCCGCACATGCCCT---GCCCGTGTGT-------GGGAGAGATCAAGCCCCCTGACTCTCCTTACACGGATGAGTTTGGGTTGTTTTGTTTTGTT i mm10.chr19 C 0 C 0 s canFam3.chr1 35321419 604 - 122678785 GGAAGAAATGAAGAGTGGGCTCTGAGAGAGAATAGGAGAGAGA---------------------------------TCCTGAGAGGAGAGAGTATTAGCTGGGAGAGTgggaggaatccaggcagagggaacag-catctgtgaagtccttgaatatgggaagagctggacagccccagcagtgagagggttacagcggctgca--gt--gggcag-------------gagagtggaggaacatgatgtta-----ggacatacaccatgggtgtggcaggccagagggagcatttgggatttttttataaaggaaatgagaaaccatttaaaatttttaagtaaaagaa-gag--------------------------------tagaattcaattcgggtttc--------------aaaaacattgttctggctgT-GCATGGCCATCtgtattagtccactcgggcagccataacaaagtaccacagcttgggtgacctgaacagcagaaacgtattttttcatggttctggaggctagaggcacaagattgagatgccatcagggttagtctctagtaagatctccct----ttctgccttgtagataaatggcaccttctcattgtgacctcacatggccttcactctatgtaaaccagtaaagacagagagaagtctctggtgtctcttcc------------------tcttcttgtgaa i canFam3.chr1 C 0 I 185 a score=4626498.000000 s hg38.chr9_GL383541v1_alt 118629 1280 + 171286 TTAAATAACTGGGT--AAAACTAAACTGTATACAAAGACTGAGGCACCCAAAAGAAAACTGACAGGAGGAGGAGCAGAAAAAAGAAAGAGAAAAAATA---AGGTGTTATTATTTT------TTTCTTTTCTGCCCAGGCTTTCCAGGATACACAAACTCATTTTAAATTGACCATGGGGA------TGGTG--------GGAGGGGGA-GGTTCCTGATCTTATTTTTCTTTAT------GTTGTTTAG----GAGGAATAAAGGAA-------GAACATAGATCTTTAGCACCTGGGAGGAT------CCATCTGATGAAAAACCTG-CTC---TTCAAGGGCAGGTTTAACATTTG-----ACCAAGAGAGGAGTAGGCTCTGCCCAG----------------------ACACACAAACTTCCACAAAGACTGCCAGGCCAGCCTGAAATCCCACCATCTCTATCGGTCACTAAGGAGATAATAAG-GAAGAATCTGCTCTGGGCCTTCCATTCACTATGGTTCAGTCCTCGGAATGTACAATCTAAGTCAGATGGTTGACCCAGGCAGCTGGTATCTCCAAGATGACTTCATCCTTTTTGTTTCATGAAA-------------AGTGTAAATCCTAATTAATGACTGGAATCTGGGC-----ATATTCTATA-GAAAATCTGTACTGGTTTATAAAGTTTACTTAGAATTGAACGAGGTATCATTT-CAATAGAGGCACATGGATA-------------TTTTCTGTCACTTAAGCCACAGACATTAGAAAATGCTTTCTATCATTTAAAGCATA-GCTGATAGTCT----------------------------TTGCTGTCTAGTT-------------CTACT-TTAA--------------------TCATATTTTACC----------ACTTGCTAATCTAG------------------------------ATTAGATT------ATTTTGC------------------------------------------------ATTGCTGAT-------ATG-C---------------------------------------------------------------------TTTATCTTCTTTGCAGGGTATTACCTGCTAGCCAACACAAAGTTCACATCTCAGCCTGGCTACATTGGAAGGCTCTATGGGCCCTCCCTACCAGGAAACTTGCAGTATTGTCTGCGTTTTCATTATGCCATCTATGGATTTTTAAAAATGAGTGACACCCTAGCAGTTTACATCTTTGAAGAGAACCATGTGGTTCAAGAGAAGATCTGGTCTGTGTTGGAGTCCCCAAGGGGTGTTTGGATGCAAGCTGAAATCACCTTTAAGAAGCCCATGCCTACCAAGGTACAGTAGAGCCAA---------TTTCTCCTGTGTCCATGTTCAGTTGCTGGACTAGATTTGTGAATGTCCGTCTAGCTACTGTCAACTGGTGATGTATTATTTTCCTTCTGTTCAGGCCTAC---GGCCTCACCCTTACACCCTACTCCCAGCCACATACAGGTTA----ATCCTTCAGTTATTTTCTGTTTTCTGGGTCTCTGAATCACAGCCACCTA s panTro4.chr9 68684043 1280 + 137840987 TTAAATAACTGGGT--AAAACTAAACTGTATACAAAGACTGAGGCACCCAAAAGAAAACTGACAGGAGGAGGAGCAGAAAAAAGAAAGAGAAAAAATA---AGGTGTTATTATTTT------TTTCTTTTCTGCCCAGGCTTTCCAGGATACACGAACTCATTTTAAATTGACCATGGGGA------TGGTG--------GGAGGGGGA-GGTTCCTGATCTTATTTTTCTTTAT------GTTGTTTAG----AAGGAATAAAGGAA-------GAACATAGATCTTTAGCACCTGGGAGGAT------CCATCTGATGAAAAACCTG-CTC---TTCAAGGGCAGGTTTAACATTTG-----ACCAAGAGAGGAGTAGGCTCTGCCCAG----------------------ACACACAAACTTCCACAAAGACTGCCAGGCCAGCCTGAAATCCCACCATCTCTATCGGTCACTAAGGAGATAATAAG-GAAAAATCTGCTCTGGGCCTTCCATTCACTATGGTTCAGTCCTCGGAATGTACAATCTAAGTCAGATGGTTGACCCAGGCAGCTGGTATCTCCAAGATGACTTCATCCTTTTTGTTTCATGAAA-------------AGTGTAAATCCTAATTAATGACTGGAATCTGGGC-----ATATTCTATA-GAAAATCTGTACTGGTTTATAAAGTTTACTTAGAATTGAATGAGGTATCATTT-CAATAGAGGCACATGGATA-------------TTTTCTGTCACTTAAGCCACAGACATTAGAAAATGCTTTCTATCATTTAAAGCATA-GCTGATAGTCT----------------------------TAGCCGTCTAGTT-------------CTACT-TTAA--------------------TCATATTTTACC----------ACTTGCTAATCTAG------------------------------ATTAGATT------ATTTTGC------------------------------------------------ATTGCTGAT-------ATG-C---------------------------------------------------------------------TTTATCTTCTTTGCAGGGTATTACCTGCTAGCCAACACAAAGTTCACATCTCAGCCTGGCTACATTGGAAGGCTCTATGGGCCCTCCCTACCAGGAAACTTGCAGTATTGTCTGCGTTTTCATTATGCCATCTATGGATTTTTAAAAATGAGTGACACCCTAGCAGTTTACATCTTTGAAGAGAACCATGTGGTTCAAGAGAAGATCTGGTCTGTGTTGGAGTCCCCAAGGGGTGTTTGGATGCAAGCTGAAATCACCTTTAAGAAGCCCATGCCTACCAAGGTACAGTAGAGCCAA---------TTTCTCCTGTGTCCATGTTCAGTTGCTGGACTAGTTTTGTGAATGTCCGTCTAGCTGCTGTCAACTGGTGATGTATTATTTTCCTTCTGTTCAGGCCTAC---GGCCTCACCCTTACACCCTACTCCCAGCCACATACAGGTTA----ATCCTTCAGTTATTTTCTGTTTTCTGGGTCTCTGAATCACAGCCACCTA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64839208 1280 + 135191526 TTAAATAACTGGGT--AAAACTAAACTGTATACAAAGACTGAGGCACCCAAAAGAAAACTGACAGGAGGAGGAGCAGAAAAAAGAAAGAGAAAAAATA---AGGTGTTATTATTTT------TTTCTTTTCTGCCCAGGCTTTCCAGGATACACGAACTCATTTTAAATTGACCATGGGGA------TGGAG--------GGAGGGGGA-GGTCCCTGATCTTATTTTTCTTTAT------GTTGTTTAG----AAGGAATAAAGGAA-------GAACATAGATCTTTAGCACCTGGGAGGAT------CCATCTGATGAAAAACCTG-CTC---TTCAAGGGCAGGTTTAACATTTG-----ACCAAGAGAGGAGTAGGCTCTGCCCAG----------------------ACACACAAACTTCCACAAAGACTGCCAGGCCAGCCTGAAATCCCACCATCTCTATCGGTCACTAAGGAGATAATAAG-GAAAAATCAGCTCTGGGCCTTCCATTCACTATGGTTCAGTCCTCGGAATGTACAATCTAAGTCAGATGGTTGACCCAGGCAGCTGGTGTCTCCAAGATGACTTCATCCTTTTTGTTTCATGAAA-------------AGTGTAAATCCTAATTAATGACTGGAATCTGGGC-----ATATTCTATA-GAAAATCTGTACTGGTTTATAACGTTTACTTAGAATTGAATGAGGTATCATTT-CAATAGAGGCACGTGGATA-------------TTTTCTGTCACTTAAGCCACAGACATTAGAAAATGCTTTCTATCATTTAAAGCATA-GCTGATAGTCT----------------------------TTGCTGTCTAGTT-------------CTACT-TTAA--------------------TCATATTTTACC----------ACTTGCTAATCTAG------------------------------ATTAGATT------ATTTTGC------------------------------------------------ATTGCTGAT-------ATG-C---------------------------------------------------------------------TTTATCTTGTTTGCAGGGTATTACCTGCTAGCCAACACAAAGTTCACATCTCAGCCTGGCTACATTGGAAGGCTCTATGGGCCCTCCCTACCAGGAAACTTGCAGTATTGTCTGCGTTTTCATTATGCCATCTATGGATTTTTAAAAATGAGTGACACCCTAGCAGTTTACATCTTTGAAGAGAACCATGTGGTTCAGGAGAAGATCTGGTCTGTGTTGGAGTCCCCAAGGGGTGTTTGGATGCAAGCTGAAATCACCTTTAAGAAGCCCATGCCTACCAAGGTACAGTAGAGCCAA---------TTTCTCCTGTGTCCATGTTCAGTTGCTGGACTAGTTTTGTGAATGTCCGTCTAGCTACTGTCAACTGGTGATGTATTATTTTCCTTCTGTTCAGGCCTAC---GGCCTCACCCTTACACCCTACTCCCAGCCACATACAGGTTA----ATCGTTCAGTTATTTTCTGTTTTCTGGGTCTCTGAATCACAGCCACCTA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57879068 1278 - 122973662 TTAAATAACTGGGT--AAAACTAAACCGTATACAAAGACTGAGGCACCCAAAAGAAAACCGACAGGAGGAGGAGCAGAAAAAAGAAAGAGAAAAAAT----AGGTGTTACTATTTT------TTTCTTTTCTGCCCAGGCTTTCCAGGATACACGAACTCATTTTAAATTGACCATGGGGA------TGGTG--------GGAGGGGGA-GGTTCCTGATCTTATTTTTCTTTAT------GTTGTTTAG----AAGGAATAAAGGAA-------GAACACAGATCTTCAGCACCTGGGACGAT------CCATCTGATGAAAAGCCTG-CTC---TTCAAGGGCAGGTTTAACATTTG-----ACCAAGAGAAGAGTAGGCTCTGCCCAG----------------------ACACACAAACTTCCACAAAGACTGCCAGGCCAGCCTGAAATCCCACCATCTCTATTGGTCACTAAAGAGATAATAAG-GAAAAATCTGCTCTGGGCCTTCCATTCACTACGGTTCAGTCCTCGGAATGTACAATCTAAGTCAGATGGTTGACCCAGGCAGCTGGTATCTCCAAGATGACTTCATCCTTTTTGTTTCATGAAA-------------AGTGCAAATCCTAATTAATGACTAGAATCTGGGC-----ATATTCTATA-GAAAATCTGTACTGGTTTATAAAGTTTACTTAGAATTGAATGACGTATCATTT-CAATAGAGGCACATGGATA-------------TTTTCTGTCACTTAAGCCACAGACATTAGAAAATGCTTTCTATCATTTAAAGCATA-GCTGATAGTCT----------------------------TTGCTGTCTAGTT-------------CTACT-TTAA--------------------TTATATTTTACC----------ACTTGCTAATCTAG------------------------------ATTAGATT------ATTTTGC------------------------------------------------ATTGCTGAT-------ATG-C---------------------------------------------------------------------TTTATCTTGTTTGCAGGGTATTACCTGCTAGCCAACACAAAGTTCACATCTCAGCCTGGCTACATTGGAAGGCTCTATGGGCCCTCCCTGCCAGGAAACTTGCAGTATTGTCTGCGTTTTCATTATGCCATCTATGGATTTTTAAAAATGAGTGACACCCTAGCAGTATACATCTTTGAAGAGAACCATGTGGTTCAAGAGAAGGTCTGGTCTGTGTTGGAGTCCCCAAGGGGTGTTTGGATGCAAGCTGAAATCACCTTTAAGAAGCCCATGCCTACCAAGGTACAGTAGAGCCAA---------TTTCTCCTGTGTCCATGTTCAGTTGCTGGACTAG-TTTGTGAATGTCCCTCTAGCTACTGTCAACTGGTGATATATTATTTTCCTTCTGTTCAGGCCTAC---GGCCTCACCCTTACACCCTACTCCCAGCCACATACAGGTTA----ATCCTTCAGTTATTTTCTGTTTTCTGGGTCTCTGAATCACAGCCACCTA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79808819 1284 + 112192347 TTAAATAACTGGGT--AAAACTAAACAGTATACAAAGACTGAGGCACCCAAAAGAAAACTGACAGGAGGAGGAGCAGAAAAAAGAAAGAGAAAAAGAAGGTGGGttttgtttttgtttttg-tttCTTTTCGGCCCAGGCTTTCCAGGATACAGGAACTCATTTTAAATTGACAATGGGGA------TGGTG--------GGAGGGGGA-GGTTCCTAATTTTATTTTTCTT--T------GTTATTTAG----AAGGAATAAAGGAA-------GAACACAGATCTTCAGCACCTGGGAGGAT------CCATCTGATGAAAAACCTG-CTC---TTCAAGGGCAGGTTTAACATTTG-----ACCAAGAGAGGAGTAGGCTCTGCCCAG------------------------ACACAAACTTCCACAAAGACTGCCAGGCCAGCCTGAAATCCTGCCATCTCTATAGGTCACTAAAGAGATAATAAG-AAAAAATCTGCCCTGGGCCTTCCATTCACTATGGTTCAGTCCTCGGAATATACAATCTAAGTCAGATGGTTGACCCAAGCAGCTGGTATCTCCAAGACGATTTCATCCTTTTTGTTTTGTGAAA-------------AGTGTAAATCCTAATTAATGACTGAAATCTGGGC-----ATGTGCTATA-GAAAATCTGTACTGGTTTATAAGGTTTACTTAGAATTAAATGAGGTTTCATTT-CAAT-GAGGCGCATGGATG-------------TTTTCTGTCACTTAAGCCACAGACATTAGAAAATGCTTTCTATCATTTAAAGCATA-GCTGGTAGTCT----------------------------TTGCTGTCTAGTTCTA----------CTACT-TTAA--------------------TCACATTTTACC----------ACTTGCTAATCTAG------------------------------ATTGGATT------ATTTTGC------------------------------------------------ATTGCTGAT-------ATG-C---------------------------------------------------------------------TTTATCTTGTTTGCAGGGTATTACCTGCTAGCCAACACGAAGTTCACATCTCAGCCTGGCTACATTGGAAGGCTCTATGGGCCCTCCCTACCAGGAAACCTGCAGTATTGTCTGCGTTTTCATTATGCCATCTATGGATTTTTAAAAATGAGTGACACCCTAGCCGTTTACATCTTTGAAGAGAACCATGTGGTTCAAGAGAAGATTTGGTCCGTGTTGGAGTCCCCAAGGGGTGTTTGGATGCAAGCTGAAATCACCTTTAAGAAGCCCATGCCTACCAAGGTACAGTAGAGCCAA---------TTTGTCCTGTGTCCATGTTCACTTGCTGGACTAG-TTTGTGAATATCCATCTAGCTACTGTCAACTGGTGAGATATTATTTTCCTTTTGTTCAGGCCTAC---GGCCTCACCCTCACACCCTACTCCCAGCCATATACAGATTA----ATCCTTCAGTTATTTTCTGTTTTCTGGGTCTCTGAATCACAGCCACCT- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80888760 1284 + 112612857 TTAAATAACTGGGT--AAAACTAAACAGTATACAAAGACTGAGGCACCCAAAAGAAAACTGACAGGAGGAGGAGCAGAAAAAAGAAAGAGAAAAAGAAGGTGGGTTTTGTTTTTGTTTTTG-TTTCTTTTCGGCCCAGGCTTTCCAGGATACAGGAACTCATTTTAAATTGACCATGGGGA------TGGTG--------GGAGGGGGA-GGTTCCTAATTTTATTTTTCTT--T------GTTATTTAG----AAGGAATAAAGGAA-------GAACACAGATCTTCAGCACCTGGGAGGAT------CCATCTGATGAAAAACCTG-CTC---TTCAAGGGCAGGTTTAACATTTG-----ACCAAGAGAGGAGTAGGCTCTGCCCAG------------------------ACACAAACTTCCACAAAGACTGCCAGGCCAGCCTGAAATCCTGCCATCTCTATAGGTCACTAAAGAGATAATAAG-AAAAAATCTGCCCTGGGCCTTCCATTCACTATGGTTCAGTCCTCGGAATATACAATCTAAGTCAGATGGTTGACCCAAGCAGCTGGTATCTCCAAGACGATTTCATCCTTTTTGTTTTGTGAAA-------------AGTGTAAATCCTAATTAATGACTGAAATCTGGGC-----ATGTGCTATA-GAAAATCTGTACTGGTTTATAAGGTTTACTTAGAATTAAATGAGGTTTCATTT-CAAT-GAGGCGCATGGATG-------------TTTTCTGTCACTTAAGCCACAGACATTAGAAAATGCTTTCTATCATTTAAAGCATA-GCTGGTAGTCT----------------------------TTGCTGTCTAGTTCTA----------CTACT-TTAA--------------------TCACATTTTACC----------ACTTGCTAATCTAG------------------------------ATTGGATT------ATTTTGC------------------------------------------------ATTGCTGAT-------ATG-C---------------------------------------------------------------------TTTATCTTGTTTGCAGGGTATTACCTGCTAGCCAACACGAAGTTCACATCTCAGCCTGGCTACATTGGAAGGCTCTATGGGCCCTCCCTACCAGGAAACCTGCAGTATTGTCTGCGTTTTCATTATGCCATCTATGGATTTTTAAAAATGAGTGACACCCTAGCCGTTTACATCTTTGAAGAGAACCATGTGGTTCAAGAGAAGATTTGGTCCGTGTTGGAGTCCCCAAGGGGTGTTTGGATGCAAGCTGAAATCACCTTTAAGAAGCCCATGCCTACCAAGGTACAGTAGAGCCAA---------TTTGTCCTGTGTCCATGTTCAGTTGCTGGACTAG-TTTGTGAATATCCATCTAGCTACTGTCAACTGGTGAGATATTATTTTCCTTTTGTTCAGGCCTAC---GGCCTCACCCTCACACCCTACTCCCAGCCATATACAGATTA----ATCCTTCAGTTATTTTCTGTTTTCTGGGTCTCTGAATCACAGCCACCT- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76938266 1280 + 107442819 tTAAATAACTGGGT--AAAACTAAACGATATACAAAGACTGAGGCACCCaaaagaaaactgacaggaggaggagcagaaaaaagaaagagaaaaagaaggtgggttttgtttttgt------tttcttttctgcccaGGCTTTCCAGGATACAGGAACTCATTTTAAATTGACCATGGGGA------TGGTG--------GGAGGGGGA-ggttcctgattttatttttctt--t------gttatttag----aaggaataaaggaa-------gaacACAGATCTTCAGCACATGGGAGGAT------CCATCTGATGAAAAACCTG-CTC---TTCAAGGGCAGTTTTAACATTTG-----ACCAAGAGAGGAGTAGACTCTGCCCAG------------------------ACACAAACTTCCACAAAGACTGCCAGGCCAGCCTGAAATCCTGCCATCTCTATAGGTCACTAAAgagataataagaaaaaaatctgctcTGGGCCTTCTATTCACTATGGTTCAGTCCTCGGAATATACAATCTAAGTCAGATGGTTGACCCAAGCAGCTGGTATCTCCAAGatgatttcatcctttttgttttgtgaaa-------------agtGTAAATCCTAATTAATGACTGAAATCTGGGC-----ATGTGCTATA-GAAAATCTGTACTGGTTTATAAGGTTTACTTAGAATTAAATGAGGTTTCATTT-CAAT-GAGGCGCATGGATG-------------TTTTCTGTCACTTAAGCCACAGACATTAGAAAATGCTTTCTATCATTTAAAGCATA-GCTGGTAGTCT----------------------------TTGCTGTCTAGTTCTA----------CTACT-TTAA--------------------TCACATTTTACC----------ACTTGCTAATCTAG------------------------------ATTGGATT------ATTTTGC------------------------------------------------ATTGCTGAT-------ATG-C---------------------------------------------------------------------TTTATCTTGTTTGCAGGGTATTACCTGCTAGCCAACACGAAGTTCACATCTCAGCCTGGCTACATTGGAAGGCTCTATGGGCCCTCCCTACCAGGAAACCTGCAGTATTGTCTGCGTTTTCATTATGCCatctatggatttttaaaaatgagtgacACCCTAGCCGTTTACATCTTTGAAGAGAACCATGTGGTTCAAGAGAAGATCTGGTCTGTGTTGGAGTCCCCAAGGGGTGTTTGGATGCAAGCTGAAATCACCTTTAAAAAGCCCATGCCTACCAAGGTACAGTAGAGCCAA---------TTTGTCCTGTGTCCATGTTTAGTTGCTGGACTAG-TTTGTGAATATCCATCTAGCTACTGTCAACTGGTgagatattattttccttttgttcagGCCTAC---GGCCTCACCCTCACACCCTACACCCAGCCACATACAGATTA----ATCCTtcagttattttctgttttctgggtcTCTGAATCACAGCCACCT- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81202725 1286 + 108555830 TTAAATAACTGGGT--AAAACTAAACGGTATACAAAGACTGAGGCACCCAAAAGAAAACTGACAGGAGGAGGAGCAGAAAAAAGAAAGAGAAAAAGAAGGTGCGTTTTGTTTTTGTTTTTGCTTTCTTTTCTGCCCAGGCTTTCCAGGATACAGGAACTCATTTTAAATTGATCATGGGGA------TGGTG--------GGAGGGGGA-GATTCCTGATTTTATTTTTCTT--T------GTTATTTAG----AAGGAATAAAGGAA-------GAACACAGATCTTCAGCACATGGGAGGAT------CCATCTGATGAAAAACCTC-CCC---TTCAAGGGCAGGTTTAACATTTG-----ACCAAGAGAGGAGTAGACTCTGCCCAG------------------------ACACAAACTTCCACAAAGACTGCCAGGCCAACCTGAAATCCTGCCATCTCTATAGGTCACTAAAGAGATAATAAGAAAAAAATCTGCTCTGGGCCTTCTATTCACTATGGTTCAGTCCTCGGAATATACAATCTAAGTCAGATGGTTGACCCAAGCAGCTGGTATCTCCAAGATGATTTCATCCTTTTTGTTTTGTGAAA-------------AGTGTAAATCCTAATTAATGACTGAAATCTGGGC-----ATGTGCTATA-GAAAATCTGTACTGGTTTATAAGGTTTACTTAGAATTAAATGAGGTTTCATTT-CAAT-GAGGCACATGGATG-------------TTTTCTGTCACTTAAGCCACAGACATTAGAAAATGATTTCTATCATTTAAAACATA-GCTGGTAGTCT----------------------------TTGCTGTCTAGTTCTA----------CTACT-TTAA--------------------TCACATTTTACC----------ACTTGCTAATCTAG------------------------------ATTAGATT------GTTTTGC------------------------------------------------ATTGCTGAT-------ATG-C---------------------------------------------------------------------TTTATCTTGTTTGCAGGGTATTACCTGCTAGCCAACACAAAGTTCACATCTCAGCCTGGCTACATTGGAAGGCTCTATGGGCCCTCCCTACCAGGAAACCTACAGTATTGTCTGCGTTTTCATTATGCCATCTATGGATTTTTAAAAATGAGTGACACCCTAGCCGTTTACATCTTTGAAGAGAACCATGTAGTTCAAGAGAAGATCTGGTCTGTGTTGGAGTCCCCAAGGGGTGTTTGGATGCAAGCTGAAATCACCTTTAAGAAGCCCATGCCTACCAAGGTACGGTAGAGCCAA---------TTTGTCCTGTGTCCATGTTCAGTTGCTGGACTAG-TTTGTGAATATCCATCTAGCTACTGTCAACTGGTGAGATAGTATTTTCCTTTTGTTCAGGCCTAC---AGCCTCACCCTCACACCCTACTCCCAGCCATATACAGATTA----ATCCTTCAGTTACTTTCTGTTTTCTGGGTCTCTGAATCACAGCTACCT- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111436514 1281 - 210400635 TTAAGAAACTGGGT--AAAACTAAACTGTATACAAAGATTGAGGCACCCAAATGAAATTTCACAGGAGGAAGAGCAGAAAAAAGAAAGAGAAAAAATA---AGGT-TGGTTGTT--------TTTTTTTTCTGCCTAGACTTTCTAGGATGTATGAATACATTTTAAATTGACCACGGGGA------TACTG--------GAAGGGGAA-GATTCCTGATCTTATTTTTCTTTAT------GTTACTTAG----AAGGAATAAGGAAA-------GAACATAGATCTTCAGCACCCGGGAGGAT------CCATCTGATGAAAA-CTTG-CTC---TTCAAGGGCAGGTTTAACATTTG-----ACCAAGAGAGGAATAGGCTCTGCCCAG----------------------ACACACAAATGTCCACAAAGACTGCCAGGCCAGCCTGGAATCCCGCCATCTCTATCAGTCACTACAGAGATAATAAG-GAAAAATCTGCCCTGGGCATTCCATTCACTATGGTTCAGTCCTCAGAATATATCATCTAAGTCAGATGGTTGACCCAGGCAGCTGGTGTCCCCATGATGATTTCATCCTTTTTGTTTCATGAAA-------------AATGTAAATCCTAATGAATGACTGTAATCTGGACATTCTATATGCTATA-GACAACCTGTACTGGTTTCTAAAGTTTACTTAGAATTGAACAAGGTTTCATTT-CAATAGTGGCACATAGATA-------------TTTTCTGTCACTT-AGCCACAGACATTAGAAAATGTGTTCTATCATTTAAAGCACA-GCTGATAGTCT----------------------------TTGCTGGCTAGTTCTT----------CCACT-TTAA--------------------TCACTTTTTTCC----------ACTTGCTAATCTGG------------------------------TTTAGATT------ATTTTGC------------------------------------------------ATTGCTGAT-------ATATT---------------------------------------------------------------------TTTTTCTTGTTCCCAGGGTATTACTTGCTAGCCAACACAAAGTTCACATCTCAGCCTGGCTACATTGGAAGGCTCTACGGCCCCTCACTACCGGGAAATTTGCAGTATTGTCTGCGTTTTCATTATGCCATCTATGGATTTTTAAAAATGAGTGACACCCTAGCAGTTTATATCTTTGAAGAGAACCATGTGGTTCAAGAGAAGGTCTGGTCTGTGTTGGAGTCCCCAAGGGGTGTTTGGATGCAAGCAGAAATCACCTTTAAGAAGCCCATGCCTACCAAGGTAAAATAGAGCT-A---------TTTGTCCTGTGTCCATGCTCAGTAGCCGAGCTGA-TTTGTGAATGTCCATCTAGCTACTGTCGACTGATGATATATTGTTTACCTCCAGTTCAGGCCTAT---GGCCTCACCCTCACACCCTACTCCCAGGCACATGCAAGTTA----ATCCTTCAGTTATTTTCTGTTTTCTGGGTCTCTGCATTGCA-TCACCTA i calJac3.chr1 C 0 C 0 s mm10.chr19 38079711 1443 - 61431566 TTTAATTCTTA------------------AAGCAAACACTGACAGGCCATGAAGAGAACTCCCCG-----AGAACAGATGAGA-AAAGAGAGAAACT-------------------------GTCGTGTGCTGCCT-GACTTC---GCATACGTGGATCCGCTTTAGCTTGACCGTGTGGGTGTGATTGGTA--------GTAAGGGGACCGTTGCTGCTAGAAATTCCAATC-T------GTTTTTTAGAACTAAGAAACAAGGAAA-----TTGAACCCAG--CCGCAGCATCTGGGAGCATCAGCGCCCAACCGGTCAGAAACATGATTT---TTCAGGGACGGGTTTAATATGTAGGTATACCAAAAGAACAGTGTGTTCTGCCCAG-----------------------------AACTCTCCCGTGG--TGCCAGGCCAGCCTGCCTTCCCTCC-TCCTGACTGGCCACTGCAGATAGAGCAGG--GGAAGTGAACTCTTTGATTGACACTGACTATGACCCAG-----------------------CAGG----------AGACATCCAGTAGTTCCAAGCTCATTCATTCTTTTTTGTGTGATTAAAAAAAAAAAAAAAGAGTATAGTTCCTACTTAATGACATGAATCTGAGT-----CTGTACACTA-TAAGATCTACACTGCTTTATGACAGCCACTTGAATTTCTAAGAGGTTTAATTTGCTATCCAGGTCTAAGGACATTGTATAGATTTTTTTTTTGTCACTTAAACCACAGACGTTAGAAAGCCTCTATTAAGGTTTAAAACCTATGGAAGTAGTCTTGAGGGAACACCCCATTGCCTTAACTGGTTTCCACCTGGCTGTATGAGCTCATTCTACA-TTGGTGTTGCACTAAGTcagtggttctcagtctccctgatactgtgaccctctaatacagctccttatgttgtagggaccccccccaaccataaaatt------atttcactgctacttcataactgtaatttggctactcttatgaatcatcatgtaaatgtctgat-------atg-ctggatgtctggtatgtgactcccgaacgggttgggattcccccaggttgagaaccacAGCACTAAGTGGTTTGTTTTCCTCACAGGGCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAGAAAACCATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAGGTACAGTAGAACCTG---------CACTACCTGTGTCCAT-TTTAGTTGCTAGATGTG-GGTAATGATTTCTG----------GTTAGCTGATGGTGTAT--TTATCCTTCTGTTCGGATCAACCTGCATTTGACACGTATCACCCACCCCCAGACAGGTGCATGTTA----AGCCTTCAATCCCTTTGCATTt--------tctgaattatatctaccta i mm10.chr19 C 0 I 73 s canFam3.chr1 35322208 1324 - 122678785 TTAAATCACTGGATAAAAAACCAAACTAAATACAAAGACCAAGGGAACAGAAGGAAAATTGATGAGGGGAGGAGCAGAAAAAGGAAAGAACAAAAAAT---AGATATTATTTT---------TTTCTTTTCTACCCAGGCTTTCTAGAATACGTGGATCTGTTTTAAGTTTACTGTAGGGG------TGATGGAGCAGGTGGGAGGGGA-GGTTCTTGACCTTATGTTTCttttttttttatttatttaa----aGGAAATAATTGTTCTTCCTTGGACCCTTTTCTT--GCACAGAGAAGGTA------C-------TTGAAGATCTT-TTCTGGTTGAATGGCAGGCTGAA-ACAAA-----ATCGATTTTGGGGATGACACAGATCAGTCCCTAAGAATACTCATGTAAAATAATCAAAATTC--GAAGGACTATCAGACCAGTCTGTGAT----CTGTTTCCACTAATCACTGCAGGAATAAGAAG-GAAAAATCTACTCTGGACCTTACTGTCACTAGGACCCAGTATTAGG--TACTCAGTCTGTGTCACTTGATTGACCCAGACAGCTGG-AGCTCCAAGATGATTTCATCCCTTTTGTTTCATGAGA-------------AGCACAAATCCTAACTGATGACTAGCATCTGAGC-----ATATTGCAGATGGAAATCTATACTAGTTTATGAAGTTTACTGA-AATTGAAGAAGTTTTTTTGA-TAATAGAGTCACA-GGATA-------------TATCCTGTCACTTAAGCCACAGATATTACATAATGCATCCTATCATTTAAGACCCATGGAAATAGTCT----------------------------CTGTTGGCAAATTCTA----------CTGCTCTTAA--------------------CCAAATTTTGCC----------ACTTGACACTTTGG------------------------------CCTAGATTATTTAAATTTTTC------------------------------------------------ATCACTGATAGCCTAAATG-T---------------------------------------------------------------------TTTGTCCTGTTTGCAGGGTACTACTTGCTGGCCAACACAAAGTTTACATCTCAGCCTGGCTACATTGGAAGGCTCTACGGTCCCTCCCTGCCAGGAAACTTGCAGTATTGTCTACGTTTTTATTACGCCATCTATGGGTTTTTAAAAATGAGTGACACCCTGGCAGTTTATATCTTTGAAGAGAACCACGTAGTTCAAGAGAAAATTTGGTCTGTGCTGGAGTCTCCAAGGGGTGTTTGGATGCAAGCTGAAATCACCTTCAAGAAGCCCATGCCTACCAAGGTATAGTAGAGCCAGTGCAATGCTTTGCCCCTTTGTTCATCTTTGGTTTCTGGGCTGGGTTAGTGAATTTCTGTTTAATTATTTTCAAATGGTGATGTTTTATTTTTCTTCTG---------AC---AGCCCCACCGCTACACTCTA-TCTGAGCCATGCACAAGTTATATTACCTATAAATTCTTTTCAGTTTTCT--GTCTCAGAATCATGGCCACCGA i canFam3.chr1 I 185 C 0 a score=353463.000000 s hg38.chr9_GL383541v1_alt 119909 101 + 171286 GAGAGTTTGCTTTTTGTTTATCTCTTAAATTCCCTAAGACTAATTCAAAGACTGAGAGTACATGAATTG---TCCAAGTTCAACAGCTGAACTTTAGTTTGAAA s panTro4.chr9 68685323 101 + 137840987 GAGAGTTTGCTTTTTGTTTATCTCTTAAATTCCCTAAGACTAATTCAAAGACTGAGAGTACATGAATAG---TCCAAGTTCAACAGCTGAACTTTAGTTTGAAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64840488 101 + 135191526 GAGAGTTTGCTTTTTGTTTATCTCTTAAATTCCCTAAGACTAATTCAAAGACTTAGAGTACATGAATAG---TCCAAGTTCAACAGCTGAACTTTAGTTTGAAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57880346 104 - 122973662 GAGAGTTTGCTTTTTGTTTATCTCTTAAATTTCCTAAGACTAATTCAAAGACTGAGAGTACATGAATAGTTCTTCAAGTTCAACAGCTGAACTTTAGTTTGAAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79810103 100 + 112192347 -AGAGTTTGCTTTTTGTTTATCTCTTAAATTCCCTGAGACTAATCCAAAGACTGGGAGTACATGAATAG---TCCAAGTTCAACAGCTGAACTTTAGTTTGAAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80890044 100 + 112612857 -AGAGTTTGCTTTTTGTTTATCTCTTAAATTCCCTGAGACTAATCCAAAGACTGGGAGTACATGAATAG---TCCAAGTTCAACAGCTGAACTTTAGTTTGAAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76939546 100 + 107442819 -agagtttgctttttgtttatctCTTAAATTCCCTGAGACTAATCCAAAGACTGGGAGTACATGAATAG---TCCAAGTTCAACAGCTGAACTTTAGTTTGAAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81204011 100 + 108555830 -AGAGTTTGCTTTTTGTTTATCTCTTAAATTCCCTGAGACTAATCCAAAGACTGGGAGTACATGAATAG---TCCAAGTTCAACAGCTGAACTTTAGTTTGAAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111437795 99 - 210400635 GAGAGTTTGC-TTTTGTTTATATTTTAAATTCCCTGAGACTAATCC-AAGACTGGGAGTACATGAAAAC---TCCAAGTTCAACGGCTGAACTTTAGTTTGAAA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35323532 96 - 122678785 GAGTGTTTGC---TTGTTTATTTCTCAGATTCCCTGAGAATAGACCAAAGATGGTGAATTCATGGATAG---TCCAAGTTCAACAGCTAAACTTTAATTTGA-- i canFam3.chr1 C 0 C 0 e mm10.chr19 38081154 73 - 61431566 I a score=2319951.000000 s hg38.chr9_GL383541v1_alt 120010 649 + 171286 CTTTAGTCATAATtctctctctctctttttctttccctccctctttctcAAACACACATACAC---------ACACTAGTGGGAATGCTA------GTATT----------------------TTAAAAAGGTGAAATCAGTGAGCCTGGTTCTGCATTGAGGCTTTAAGGTTAACAACCTAAGGCTCTAGCTGAACACAGGATG-----AGGAAGCTCATTAAAAAATATAGAACCAACACCACCCTAGCCAGAGAGAATTTACATAAGGGAACCGTCAGCATCTGATTTTTATATAAATGAGAATATAAAAAGAGATCTT-TATTGCAAGGGGAATGGAAAAGAA-AGCTGAAATCT-CTCAAGCTTAGCAACTCATAAACTTAAAGAAGTTTTACAGATGCAATAAATTCTGTCAACTGCAACTCAGA-ATGAAACCAGTGTGG---GAAAAATCCATTTTGCTTCAGCCTGTGTCAGTCAATCAGCAAATATCTCTTGAGTATCCTGTC-GTGTAAGAAAGGGTCCCAAAG-AAAAATAAGAAAG-TGCTATCCTTCAAACAGATAACTcacacagtggtagttcaataaacattgttgaatgaaggaaGGAAG------------------------GAATGAATGAATG------------AGTCTATCACATTCA-AATCCAGGAGTCACCCAAAGTGCAGGCTCCCCTGGGGAAGGTGCAAACTTGGGGG s panTro4.chr9 68685424 646 + 137840987 CTTTAGTCATAATtctctctctctctttctctttccctccctctttctcAAACACACATACAC---------ACACTAGCGGGAATGCTA------GTATT----------------------TTTAAAAGGTGAAATCAGTGAGCCTGGTTCTGCATTGAGGCTTTAAGGTTAACAACCTAAGGCTCTAGCTGAACACAGGATG-----AGGAAGCTCATTAAAAAATATAGAACCAACACCACCCTAGCCAGAGAGAATTTACATAAGGGAACCGTCAGCATCTGATTTTGATAGAAATGAGAATATAAAAAGAGATCTT-TATTACAAGGGGAATGGAAAAGAA-AGCTGAAATCT-CTCAAGCTTAGCAACTCATAAACTTAAAGAAGTTTTACAGATGCAATAAATTCTGTCAACTGCAACTCAGA-ATGAAACCTGTGTGG---GAAAAATCCATTTTGTTTCAGCCTGCGTCAGTCAATCAGCAAATATCTCTTGAGTATCCTGTC-GTGTAAGAAAGGGTCCCAAAGAAAAAATAAGAAAG-TGCTATCCTT----CAGATAACTCACACAGCGGTAGTTCAATAAACATTGTtgaatgaaggaaggaag------------------------gaatgaatgaatg------------aGTCTATCACATTCA-AATCCAGGAGTCACCCAAAGTGCAGGCTCCCCTGGGGAAGCTGCAAACTTGGGGG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64840589 653 + 135191526 CTTTAGTCATAATtctctctctctctttctctttccctccctctttctcAAACACACATACAC---------ACACTAGTGGGAATGCTA------GTATT----------------------TTAAAAAGGTGAAATCAGTGAGCCTGGTTCTGCATTGAGGCTTTAAGGTTAACAACCTAAGGCTCTAGCTGAACACAGGATG-----AGGAAGCTCATTAAAAAATATAGAACCAACACCGCCCTAGCCAGAGAGAATTTACATAAGGGAACCGTCAGCATCTGATTTTGATAGAAATGAGAATATAAAAAGAGATCTT-TATTGCAAGGGGAATGGAAAAGAA-AGCTGAAATCT-CTCAAGCTTAGCAACTCATAAACTTAAAGAAGTTTTACAGATGCAATAAATTCTGTCAACTGCAACTCAGA-ATGAAACCAGTACGG---GAAAAATCCATTTTGTTTCAGCCTGTGTCAATCAATCAGCAAATATCTCTTGAGTATCCTGTC-GTGTAAGAAAGGGTCCCAAAG-AAAAATAAGAAAG-TGCTATCCTTCAAACAGATAACTCACACAGTGGTAGTTCAATAAACATTGTtgaatgaaggaaggaag------------------------gaatgaatgaatg--------aatCAGTCTATCACATTCA-AATCCAGGAGTCACCCAAAGTGCAGGCTCCCCTGGGGAAGCTGCAAACTTGGGGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57880450 647 - 122973662 CTTTAGTCATAAT--tctctctccctttctctttccctccctctctctcAAACACACATACAC---------ACACTAGTGGGAATGCTA------GTATT----------------------TTAAAAAGGTGAAATCAGTGAGTCTGGTTCTGCATGGAGGCTTTAAGGTTAACAACCTAAGGCTCTAGCTGAACACAGGATG-----AGGAAGCTCATTAAAAAATATAGAATCAACACCACCCTAGCCAGAGAGAATTTACATAAGGGAACTGTCAGCATCTGATTTTGATAGAAATGAGAATATAAAAAGAGATCTT-TATTGCAAGGGGAATGGAAAAGAA-AGCTGTAATCT-CTCAAGCTTAGCAACTCATAAACGTAAAGAAGTTTTACAGATGCAATAAATTCTGTCAACTGCAACTCAGA-ATGAAACCAGTGTGG---GAAAAATCCATTTTGTTTCAGCCTGTGTCAGTCAATCAGCAAATATCTCTTGAGTATCCTGTC-GTGTAAGAAAGGGTCCCAAAG-AAAAATAAGAAAG-TGCTATCCTTCAAACAGATAACTcacacagtggtagctcaataaacattgttgaatgaaggaatGAAT------------------------GAATGAATGAATC------------AGTCTATCACATTCA-AATCCAGGAGTCACCCAAAGTGCAGGCTCCCCTGGGGAAGCTGCAAACTTGGGGG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79810203 676 + 112192347 CTTTAGTCATAATtctgtctctctctttctctttccctcc--ctctctcAAATGCACATACAC---------ACACTAGTGGGAATGCTA------GTATT----------------------TTGAAAAGGTGAAATCAGTGAGCCTGGTTCTGCATTGAGGCTTTAAGGTTAACAACCTAAGGCTCTAGCTGAACACAGGATG-----AGAAAGCTCATTAAAAAATATAGAAACAACACTGCCCTAGCCAGAGAGAATTTACATAAGGTAACTGTCAGCATCTGATTTTGATAGAAATGAGAATATAAAAAGAGATCTT-TATTGCAAGGGGAATGGAAAAGAA-AGCTGTAATCT-CTCAAGCTTAGCAACTCATAAACTTAAAGAAGTTTTACAGATGCAATAAATTCTGTCAACTGCAACTCAGA-ATGAAACCAGTGTGG---GAAAAATCCATTTTGTTTCAACCTGTGTCAGTCAGTCGGCAAATATCTCTTGAGTATCCTGTCTGTGTAAGAAAGAGTCCCAAAG-AAAAATAAGAAAG-TGCTGTCCTTCAAACAGATAACTCACAGAGTGGTAGCTCAATAAACATTGTTgaaggaaggaaggaaggaaggaaggaag--------gaatgaatgaatgaatgaatgaatgaatCAGACTATCATATTCA-AATTCAGGAGTTACCCAAAGTGCAGGCTCCCCTGGGGAAGCTGCAAACTTGGGGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80890144 672 + 112612857 CTTTAGTCATAATtctgtctctctctttctctttccctcc--ctctctcAAATGCACATACAC---------ACACTAGTGGGAATGCTA------GTATT----------------------TTGAAAAGGTGAAATCAGTGAGCCTGGTTCTGCATTGAGGCTTTAAGGTTAACAACCTAAGGCTCTAGCTGAACACAGGATG-----AGAAAGCTCATTAAAAAATATAGAACCAACACTGCCCTAGCCAGAGAGAATTTACATAAGGTAACTGTCAGCATCTGATTTTGATAGAAATGAGAATATAAAAAGAGATCTT-TATTGCAAGGGGAATGGAAAAGAA-AGCTGTAATCT-CTCAAGCTTAGCAACTCATAAACTTAAAGAAGTTTTACAGATGCAATAAATTCTGTCAACTGCAACTCAGA-ATGAAACCAGTGTGG---GAAAAATCCATTTTGTTTCAACCTGTGTCAGTCAGTCGGCAAATATCTCTTGAGTATCCTGTCTGTGTAAGAAAGGGTCCCAAAG-AAAAATAAGAAAG-TGCTGTCCTTCAAACAGATAACTcacagagtggtagctcaataaacattgttgaaggaaggaaggaaggaaggaaggaag------------gaatgaatgaatgaatGAATGAATCAGACTATCATATTCA-AATTCAGGAGTTACCCAAAGTGCAGGCTCCCCTGGGGAAGCTGCAAACTTGGGGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76939646 672 + 107442819 CTTTAGTCataattctgtctctctctttctctttccctcc--ctctctcaaatgcacatacac---------acactagTGGGAATGCTA------GTATT----------------------TTGAAAAGGTGAAATCAGTGAGCCTGGTTCTGCATTGAGGCTTTAAGGTTAACAACCTAAGGCTCTAGCTGAACACAGGATG-----AGAAAgctcattaaaaaatatagaaccaACACCTCCCTAGCCAGAGAGAATTTACATAAGGTAACTGTCAGCATCTGATTTTGATAGaaatgagaatataaaaagaGATCTT-TATTGCAAGGGGAatggaaaagaa-agctgtaaTCT-CTCAAGCTTAGCAACTCATAAACTTAAAGAAGTTTTACAGATGCAATAAATTCTGTCAACTGCAACTCAGA-ATGAAACCAGTGTGG---GAAAAATCCATTTTGTTTCAACCTGTGTCAGTCAGTCGGCAAATATCTCTTGAGCATCCTGTCTGTGTAAGAAAgggtctcaaag-aaaaataagaaag-tgctGTCCTTCAAACAGATAACTCACAGAGTGGTAGCTCAATAAACATtgttgaaggaaggaaggaaggaaggaaggaag------------gaaggaatgaaggaaggaaggaatcagactatcatattca-aattcaggagTTACCCAAAGTGCAGGCTCCCCTGGGGAAGCTGCAAACTTGGGGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81204111 686 + 108555830 CTTTAGTCATAATtctgtctctctctttctctttccctccctctctctcAAACGCACATACAC---------ACACTAGTGGGAATGCTA------GTATT----------------------TTGAAAAGGTGAAATCAGTGAGCCTGGTTCTGCATTGAGGCTTTAAGGTTAACAACCTAAGACTCTAGCTGAACACAGGATG-----AGAAAGCTCATTAAAAAATATAGAACCAACACTGCCCTAGCCAGAGAGAATTTACATAAGGTAACCGTCAGCATCTGATTTTGATAGAAATGAGAATATAAAAAGAGACCTT-TATTGCAGCGGGAATGGAAAAGAA-AGCTGTAATCT-CTCAAGCTTAGCAACTCATAAACTTAAAGAAGTTTTACAGATGCAGTAAATTCTGTCAACTGCAACTCAGA-ATGAAACCAGTGTGG---GAAAAATCCATTTTGTTTCAACCTGTGTCAGTCAGTTGGCAAATATCTCTTGAGTATCCTGTCTGTGTAAGACAGGGTCCCAAAG-AAAAATAAGAAAG-TGCTGTCCTTCAAACAGATAACTCACAGAGTGGTAGCTCAATAAACATTGTtgaatgaaggaatgaatgaacgaacgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatCAGACTATCACATTCA-AATCCAGGAGTTACCCAAAGTGCAGGCTCCCCTGGGGAAGCTTCAAACTTGGGGG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111437894 637 - 210400635 CTTTAGTCATAATtctctctctctctttctcactccttccctccctctcAAA--CATATACAC---------ATGCTAGTGGGAATGCTA------GTATT----------------------TTTAAAAGGTGAAATCAGTGAGCCTGGTTCTGCATTAAGGCTTTAAGGTTAACAACCTAAGGCTCTAGCTGAACACAAAATG-----AGGAAGCTCATTAAAAAATGTAGAGCCAACGCAGCCCCAGCCAGAGAGAATTTACGTAAGGTAACCATCAGCATCTGATTTTGATAGAAATGAGAATATAAAAAGAGAACTT-TACTGCAAGTGTAATGGAAAAGAA-AGCTGTAATCT-CTCAAGCTTAGCAACTCATAAACTTAAAGACGTTTTACAGATGCAATAAATTCTGTCAACTGTAACTCAGATATGAAACCAGTGTGG---GAAAAATCCGTTTGGTTTCAGCCTG------tcagtcagcaaatatctcttgagtatcctgtttgtgcaagaaaggggcccaaag-aaaaataagaaag-tgccatccttcaaacagataactcacacagtggtagctcaataaacattgttgaatgaatgaatGaat------------------------caatcaatcaatc--------aattagttgatcaCATTCA-AATCCAGGAGCTACCCAAAGTCCAGGGTCTCCTGGGGAAGCT----------GGG i calJac3.chr1 C 0 C 0 s mm10.chr19 38081227 623 - 61431566 ctttctctctctctctctctctctctctctctctctctctctctctctcacacacacacacac---------acac----acCAATGATT------ACATT----------------------TTAAAAACATGAGATTGATGTGCCAGAGTCATCATTGTGGCTGGAAGGTCAAT-ACTTCAGGCCTTAGCAGAACACAGGATAAAGCCAGGCTGCTCACT-AGAGGTATGGAGGCAGC-TGACCCTGCTCAGAG---ACTGACAC-AGGGAGCTATCAGCAGCTGATTTTGCTAGCAATGAGAAGACAAAAACAGACCCTATAAATCAAGGAGAATACAGAGGAATGGCGGTAACCT-CCCAGGCTTAACAACTCATAAACTCAGGGAAGTTTCACAGATGCAATAAATTCTGTGACCCACA----AGATATGAAACCAGCGTGGAAAAAAAAAATCATTTTATTTCAGCCTG--TCAGCCGACTAACAAATTTTTCTTGAATGTCCTCTCTGTGTAAGAAAGAGGCCCAAAG-AAAGTAAACAAGG-GGCCTTTCTTCTAA-ATGTACGTCATACAATGAGAGCTCAGGATCTAGCTTTGAAT------------------------------------GAATGGGTAAGTA------------AGCTGACC---------ATCCAGGAGTTACCGCAACTCCAAGTCACCCAAGAAAGGTTAAAACCATGGGAG i mm10.chr19 I 73 C 0 s canFam3.chr1 35323628 633 - 122678785 ----AGCCCCAATTCTGTGTGTGTGTGT--------------GTGTATCACACACACATGCACACATGTATGACACACATAGGAATACTAATCACTGTATTATAATTTATAATACTAAATTACTTTAAAGGGTGAAATCAGTGAGCCTGATTTT--ATTGAGGCTTTAAGCTCAAAAGCTTAAAGTTCTACCTTAACACAAGGTA-----GAGAAGCTCAGTAAAAAATG-AGAGCGAGC------CCAGATGGAGAGAATTTATGTAAGGGTACCATCAGCCGCTGATTCTGATAGCAATGAGAATAC--AAAGAAGTATT-TACTGCAAGGGGGATATAAAAGAA-AACTATAATCTCCCCAAGTTTAACAACTCCTAAACTTAAGAAAGTTTTACAGAAGTAATAAATTCTGTCGACTACAACCCAGATATGAAACCAGTATGG---G-AAAATTCATTTTGTTTCAGCCCA--TCATTCAACCAGAAAATGTCTTTCAAGTACTTGCTCTGAGCAAGAATGCA-CTCAAAA-AAAGATATGAGAGATCCCCTTCTTCAAA-------TCCCCACAATGGGAACTCAAAATATATTGTT----------------------------------------AAATGAATGAATC-------CAATCAATTGATCACGTTTATTAACCAGGAATTACC-------CAGGCTCCCTAGGGAAAGATACAAACCTAGAAG i canFam3.chr1 C 0 C 0 a score=924761.000000 s hg38.chr9_GL383541v1_alt 120659 265 + 171286 AACAGTAGAAC---CTGCACAGACATTCATAGCCCGAACTTCTCT--TGGTTACAACCATCTGGATAGAATCATAGCTGTGTCCATCTATAACTTCCTGCCAAAGAAATCTAGTACACCACTTTTATCACAATATTGCCTGGTTACTTTTAGTCCATTACAAAACCCTCCAGGACATCATTAAA-CTTTACCATGGTTAATCAAAGATCTCTGAAAATCT--------TTTGTTTCCATTGCTAGGTAAGAAGAAAAACTATTTTCCATTGCTAGGCAG s panTro4.chr9 68686070 265 + 137840987 AACAGTAGAAC---CTGCACAGACATTCATAGCCCGAACTTCTCT--TGGTTACAACCATCTGGATAGAATCATAGCTGTGTCCATCTATAACTTCCTGCCTAAGAAATCTAGTACACCACTCTTATCACAATATTGCCTGGTTACTTTTAGTCCATTACAAAACCCTCCAGGACATCATTAAA-CTTTACCATGGTTAATCAAAGATCTCTGAAAATCT--------TTTGTTTCCATTGCTAGGTAAGAAGAAAAACTATTTTCCATTGCTAGGCAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64841242 265 + 135191526 AACAGTAGAAC---CTGCACAGACATTCATAGCCCGAACTTCTCT--TGGTTACAACCATCTGGATAGAATCATAGCTGTGTCCATCTATAACTTCCTGCCAAAGAAATCTAGTACACCACTCTTATCACAATATTGCCTGGTTACTTTTAGTCCATTATAAAACCCTCCAGGACATCATTAAA-CTTTACCATGTTTAATCAAAGATCTCTGAAAATCT--------TTTGTTTCCATTGCTAGGTAAGAAGAAAAACTATTTTCCATTGCTAGGCAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57881097 265 - 122973662 AACAGTAGAAC---CTGCACAGACATTCATAGCCCGAACTTCTCT--TGGTTACAACCATCTGGATAGAATCATAGCTGTGTCCATCTATAACTTCCTGCTAAAGAAATCTAGTACACCACTCTTATCACAATGTTGCCTGGTTACTTTTAGTCCATCACAAAACCCTCCAGGACATCATTAAA-CTTTACCATGGTTAATCAAAGATCTCTGAAAATCT--------TTTGTTTCCATTGCTAGGTAAGAAGAAAAACTATTTTCCATTGCTAGGCAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79810879 266 + 112192347 AACAGTAGAAC---TTGCACAGACATTCATAGCCTGAACTTCTCT--TAGTTACAACCATCTGGATAGAATCATAGCTGTGTCCATCTATAACTTCCTGCTAAAGAAATCTAGTACACCACTCCTATCACAATGTTGCCTGGTTACTTTTAGTCCATTACAAAACCCGCCAGGACATCATTAAATCTTTACCATGGTTAATCAAAGACCTCTGAAAGTCT--------TTTGTTTCCATTGCTAGGAAAGAAGAAAAACTATTTTCCATTGCTAGGCAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80890816 266 + 112612857 AACAGTAGAAC---TTGCACAGACATTCATAGCCTGAACTTCTCT--TAGTTACAACCATCTGGATAGAATCATAGCTGTGTCCATCTATAACTTCCTGCTAAAGAAATCTAGTACACCACTCCTATCACAATGTTGCCTGGTTACTTTTAGTCCATTACAAAACCCGCCAGGACATCATTAAATCTTTACCATGGTTAATCAAAGACCTCTGAAAGTCT--------TTTGTTTCCATTGCTAGGAAAGAAGAAGAACTATTTTCCATTGCTAGGCAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76940318 266 + 107442819 AACAGTAGAAC---TTGCACAGACATTCATAGCCTGAACTTCTCT--TAGTTACAACCATCTGGATAGAATCATAGCTGTGTCCATCTATAACTTCCTGCTAAAGAAATCTAGTACACCACTCCTATCACAATGTTGCCTGGTTACTTTTAGTCCATTACAAAACCCGCCAGGACATCATTAAATCTTTACCATGGTTAATCAAAGACCTCTGAAagtct--------tttgtttccattgctaggaaagaagaaaaactattttccATTGCTAGGCAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81204797 266 + 108555830 AACAGTAGAAC---CTGCACAGACATTCATAGCCTGAACTTCTCT--TGGTTACAACCATCTGGATAGAATCATAGCTGTGTCCATATATAACTTCCTGCTAAAGAAATCCAGTACACCACTCCTATCACAATGTTGCCTGGTTACTTTTAGTCCATTACAAAACCCGCCAGGACATCATTAAATCTTTACCATGGTTAATCAAAGACCTCTGAAAATCT--------TTTGTTTCCATTGCTAGGTAAGAAGAAAAACTATTTTCCATTGCTAGGCAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111438531 265 - 210400635 AACAGTAGAAT---CTGCACAGACATTCATAGCCCAAACTTTTCT--TGGTTACAACCATGTGGACAGAATCATAGCTGTGTCCATCTATAACTTCCTGCTAAAGAAACCTAGTACACCACTCCTATCACAATGTTGCCAGGTTACTTTTAGTCCATTACAACACCC-CCAGGGCATGATTAAATCTTTACCATGGTTAATCAAAGATCTTGGAAAATCT--------TTTGTTTCCGTTGCTAGGTAAAAAGAAAAGTTACTTTCCATTGCTAGGCAG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35324261 268 - 122678785 ATTAGTAGAACCTTCTTCACAAACTTTAATGGCTTAGGCTTTCTTGCTGGTTATAACCATCCAGACAGAA-CATAACTTCATCCAT----------CTGCTAATGAAATTTGGGACACCATTCCTATCACAGTGATGCTTGCTTATTTTTAGTGCATTGGAGTACCCACAAGGGCATGATTAAATTCTCACAGTGATTAATCAAAGATCTTTGAAAATCTTTACGAAGTTCTTTTCCATGGCTAGGCAAGAAGAAATTGTGATTATCATGACATGGCAG i canFam3.chr1 C 0 I 219 e mm10.chr19 38081850 0 - 61431566 C a score=55499.000000 s hg38.chr9_GL383541v1_alt 120924 20 + 171286 GAATAGCATGGCAACCTCCT s panTro4.chr9 68686335 20 + 137840987 GAATAGCATGGCAACCTCCT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64841507 20 + 135191526 GAATAGCATGGCAACCTCCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57881362 20 - 122973662 GAATGGCATGGCAACCCCCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79811145 20 + 112192347 GAATGGCACGGCAGTCTCCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80891082 20 + 112612857 GAATGGCACGGCAGTCTCCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76940584 20 + 107442819 GAATGGCACGGCAGTCTCCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81205063 20 + 108555830 GAATGGCAAGGCAGTCTCCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111438796 20 - 210400635 GAATGGCATGGCAGCCTCAT i calJac3.chr1 C 0 C 0 e mm10.chr19 38081850 0 - 61431566 C e canFam3.chr1 35324529 219 - 122678785 I a score=923156.000000 s hg38.chr9_GL383541v1_alt 120944 273 + 171286 TGACGTACTGATTTCT-AAAAGAGTTAAACTGATTTCTAATACCTCTAGCAGAGTAGCAGCATCTAAGTTTTACCACAATCTTACAGAAACGGCTTCTTATTATTTGTATGCGAATTAAGTAGATAGTGTTG-T---AAGTATTCCTTACGTGATTTTATCAGTCTTTGATCACCTAACTAAATTGAGCTATATTGCTCAGCTCCCTGGAGGAGAGAGGAAGCAAACAGGTGTTTCTGGTACCATGTTTCTA----CCCTTAGCTTAGACTCTTGCTCTTTA s panTro4.chr9 68686355 274 + 137840987 TGACTTACTGATTTCT-AAAAGAGTTAAACTGATTTCTAATACCTCTAGCAGAGTAGAAGCATCTAAGTTTTACCACAATCTTACAGAAACGGCTTCTTATTATTTGTATGCGAATTAAGTAGATAGTGTTGTT---AAGTATTCCTTGCGTGATTTTATCAGTCTTTGATCACCTAACTAAATTGAGCTATATTGCTCAGCTCCCTGGAGGAGAGAGGAAGCAAACAGGTGTTTCTGGTACCATGTTTCTA----CCCTTAGCTTAGACTCTTGCTCTTTA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64841527 269 + 135191526 TGACTTACTGATTTCT-AAAAGAGTTAAACTGATTTCTAATACCTCTAGCAGAGTAGAAGCATCTAAGTTTTACCAGAATCTTACAGAAACGGCTTCTTATTATTTGTATGCGAATTAAGTAGATAGTGTTG-T---AAGTATTCCTTGCGTGATTTTATCAGTCTTTGATCACCTAACTA----GAGATATATTGCTCAGCTCCCTGGAGGAAAGAGGAAGCAAACAGGTGTTTCCGGTACCATGTTTCTA----CCCTTAGCTTAGACTCTTGCTCTTTA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57881382 273 - 122973662 TGACTTACTGATTTCT-AAAAGAGTTAAACTGATTTCTAATACCTCTAGCAGAGTAGAAGCATCTAAGTTTTACCACAATCTTACAGAAACAGCTTCTTATTATTTGTATGTGAATTAAGTAGATAGTGTTT-T---AAGTATTCCTTGCGTGATTTTATCAGTCTTTGATCACCTAACTAAATTGAGATACATTGTTCAGCTCCCTGGAGGAGAGAGGAAGCAAACAGGTGTTTCTGGTACCATGTTTCTA----CCCTTAGCTTAGACTCTTGCTCTTTA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79811165 273 + 112192347 TGACTTactgatttct-aaaagagttaaactaatttctaatacctctagcagagtagaagcatctgcgttttaccacaatcttacAGAAACGGCTTCTTTTTATTTGTATGCAAATTAAGTAGATAGTGTTG-T---AAGTGTTCCTTGCGTAATTCTATCAGTCTTTGATCACCTAACTAAATTGAGATATAATGCTCAGCTCCCTGGATGAGAGAGGAAGCAAACAGGTGTTTCTAGTACCATGTTTCTA----CCCTTAGCTTAGACTCTTGCTCTTTA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80891102 273 + 112612857 TGACTTACTGATTTCT-AAAAGAGTTAAACTAATTTCTAATACCTCTAGCAGAGTAGAAGCATCTGCGTTTTACCACAATCTTACAGAAACGGCTTCTTTTTATTTGTATGCAAATTAAGTAGATAGTGTTG-T---AAGTGTTCCTTGCGTAATTCTATCAGTCTTTGATCACCTAACTAAATTGAGATATAATGCTCAGCTCCCTGGATGAGAGAGGAAGCAAACAGGTGTTTCTAGTACCATGTTTCTA----CCCTTAGCTTAGACTCTTGCTCTTTA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76940604 273 + 107442819 TGACTTACTGATTTCT-AAAAGAGTTAAACTAATTTCTAATACCTCTAGCAGAGTAGAAGCATCTGCGTTTTACCACAATCTTACAGAAACggcttctttttatttgtatgcaAATTAAGTAGATAGTGTTG-T---AAGTGTTCCTTGCGTAATTCTATCAGTCTTTGATCACCTAACTAAATTGAGATATAATGCTCAGCTCCCTGGATGAGAGAGGAAGCAAACAGGTGTTTCTAGTACCATGTTTCCA----CCCTTAGCTTAGACTCTTGCTCTTTA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81205083 273 + 108555830 TGACTTACTGATTTCT-AAAAGAGTTAAACTAATTTCTAATACCTCTAGCAGAGTAGAAGCATCTACGTTTTACCACAATCTTACAGAAACGGCTTCTTTTTATTTGTATGCAAATTAAGTAGATAGTGTTG-T---AAGTATTCCTTGCATAATTCTATCAGTCTTTGATCACCTAACTAAATTGAGATATAATGCTCAGCTCCCTGGATGAGCGAGGAAGCAAACAGGTGTTTCTGGTACCATGTTTCTA----CCCTTAGCTTAGACTCTTGCTCTTTA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111438816 272 - 210400635 TGACTTACTGATTTTT-GAAAGAGTTGAACTAATTTCTAACACCTCTAGCAGAGTAGAAGCATATAAGTTTTACCACAATCTCACAAACACGGCTTCTTATTATTTGTATGCTAATTAACTAGGTAGTGTTG-T---AAGTCTTCCTTGGGTAATTCTATCAGACTTTGATCACCTAACTAAATTGAGATATATTGCTTAGCT-CATGGAGGAGAGAGAAAGTAAACAGGTCTTTCTGGTGCCACATTTCTA----CCCTTAGCTTAGGCTCATGCTCTTTA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35324748 279 - 122678785 TGACTTACTGActtctaaaaagggttgagctaatttaccatacctctagcagaacgtaagcatacaagttttatcacagtctcataggcacaacttgtc-ttatttttatgctaattaaacaggtaatgtta-tttcaGGCCTCCCCTTCTTAACTCCGTTGTATATTGATCATGTGGCTAGAGTGAGATAT-TTGGTTTGCCCCCTGGATGATAGGAGAAGCTAGGTGATGTTTCTGGTGTGAGGTTCCCATTTCTTCTTAGTCTAGACTCATGCTCTTTA i canFam3.chr1 I 219 C 0 e mm10.chr19 38081850 0 - 61431566 C a score=1204921.000000 s hg38.chr9_GL383541v1_alt 121217 359 + 171286 AGCTCATTGCCTAGACAATATCAAATAATTTTTGAACAAGCCTTTCTTCCTATAAATGTCATCTTATAGATGGACTCTTGCAGCAGCATTATTGAACTTTCCTCTTCGATTTACTAGTACTGGAGAAATCCAAGTTTCTCTGCACTTCTTAGGGACCCCAAAGGCCTAACTTGAGTTCCCATTACCAATTATTTAACTCTTACAAGTAGTTATAGTAAT----acacacacatgcacgcatgtac----acacacacatgcac----------------------acacatacacacaA------GCAAA----TACCAGAGTCCCACAATCAGGGGTGCACTAGAAAGTAATGGAATCTTCGTTACACTCTATGTCCTATTTTGCTGA-------------------TTTTTTT-AAA s panTro4.chr9 68686629 359 + 137840987 AGCTCATTGTCTAGACAATATCAAATAATTTTTGAACAAGCCTTTCTTCCTATAAATGTCATCTTATAGATGGACTCTTGCAGCAGCATTATTGAACTTTCCTCTTCGATTTACTAGTACTGGAGAAATCCAAGTTTCTCTGCACTTCTTAGGGATCCCAAAGACCTAACTTGAGTTCCCATTACCAATTATTTAACTCTTACAAGTAGTTATAGTAAT----acacacacatgcatgcatgtac----acacacacatgcac----------------------acacatacacacaA------GCAAA----TACCAGAGTCCCACAATCAGGGGTGCACTAGAAAGTAATGGAATCTTCGTTACACTCTATGTCCTATTTTGCTGA-------------------TTTTTTT-AAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64841796 359 + 135191526 AGCTCATTGCCTAGACAATATCAAATAATTTTTGAACAAGCCTTTCTTCCTATAAATGTCATCTTATAGATGGACTCTTGCAGCATCATTATTGAACTTTCCTCTTCGATTTACTAGTCCTGGAGAAACCCAAGTTTCTCTGCACCTCTTAGGGATCCCAAAGGCCTAACTTGAGTTCCCATTACCAATTATTTAACTCTTACAAGTAGTTATAGTcat----acacacacacacatgcatgtac----acacacacatgcac----------------------acacatacacaGAA------GCAAA----TACCAGAGTCCCACAGTCAGGGGTACACCAGAAAGTAATGGAATCTTCGTTACACTCTATGTCCTATTTTGCTGA-------------------TTTTTTT-AAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57881655 356 - 122973662 AGCTTATTGCCTAGACAATATCAAATAATTTTTGAAGAAGCCTTTCTTCCTATAAATGTCATCTTATAGATGGACTCTTGCAGCAGCATTATTGAACTTTCCTCTTCGATTTATTAGTCCTGGAGAAATCCAAGTTTCTCTGCACCTCTTAGGGATCCCAAAGGCCTAACTTGAGTTCCCATTACCAATTATTTAACTCTTACAAGTAGTTATAGTAat----acacacac--gcgcgcatgtac----acacacacatgcac----------------------acacatacacacaa------gcaaa----tacCAGAGTCCCACAATCAGGGGTGCACCAGAAAGTAATGGAATCTTCATTACACTCTATGTCCTATTTTGCTGA--------------------TTTTTA-AAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79811438 347 + 112192347 AGCTCATTGCCTAGACAATATCAAATAATTTTTGAATGAGCCTTTCTTCCTATAAATGTCATCTTATAGATGGACTCTTGCAGCAGCATTATTGAACTTTCCCCTTCGATTTATTAGTCCTGGAGAAATCCAAGTTTCTCTGCACCTCTTAGGGATCCCAAAGGCCTAACTTGAGTTCCCATTACCAATTATTTAACTCTTGCAAG----TATAGTAAT----acacacac--acacgcatgtac----acacacacgtacac----------------------------acacacaA------GCAAA----TACCAGAGTCCCACAATCAGGGGTGCACCA-AAAGTAATGGAATCTTTGTTACACTCTATGTCCTATTATGCTGAT------------------TTTTTTT-AAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80891375 347 + 112612857 AGCTCATTGCCTAGACAATATCAAATAATTTTTGAATGAGCCTTTCTTCCTATAAATGTCATCTTATAGATGGACTCTTGCAGCAGCATTATTGAACTTTCCTCTTCGATTTATTAGTCCTGGAGAAATCCAAGTTTCTCTGCACCTCTTAGGGATCCCAAAGGCCTAACTTGAGTTCCCATTACCAATTATTTAACTCTTGCAAG----TATAGTAAT----acacacac--acacgcatgtac----acacacacgtacac----------------------------acacacaA------GCAAA----TACCAGAGTCCCACAATCAGGGGTGCACCA-AAAGTAATGGAATCTTTGTTACACTCTATGTCCTATTATGCTGAT------------------TTTTTTT-AAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76940877 351 + 107442819 AGCTCATTGCCTAGacaatatcaaataatttttgaatgagCCTTTCTTCCTATAAATGTCATCTTATAGATGGACTCTTGCAGCAGCATTATTGAACTTTCCTCTTCGATTTATTAGTCCTGGAGAAATCCAAGTTTCTCTGCACCTCTTAGGGATCCCAAAGGCCTAACTTGAGTTCCCATTACCAATTATGTAACTCTTGCAAT----TAtggtaatacacacacacac--acacgcatgtac----acacacacgtacac----------------------------acacacaa------gcaaa----taCCAGAGTCCCACAATCAGGGGTGCACCA-AAAGTAATGGAATCTTTGTTACACTCTATGTCCTattatgctgat------------------ttttttt-aaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81205356 348 + 108555830 AGCTCATTGCCTAGACAATATCAAATAATTTTTGAATGAGCCTTTCTTCCTATAAATGTCATCTTATAGATGGACTCTTGCAGCAGCATTATTGAACTTCCCTCTTCAATTTATTAGTCCTGGAGAAATCCAAGTTTCTCTGCACCTCTTAGGGATCCCAAAGGCCTAACTTGAGTTCCCATCACCAATTATTTAACTCTTGCAAG----TATAGTAAT----acacacac--acacgcatgtac----acacacacatacac----------------------------acacacaA------GCAAA----TACCAGAGTCCCACAATCAGGGGTGCACCA-AAAGTAATGGAATCTTTGTTACACTCTATGTCCTATTATGCTGAT------------------TTTTTTTAAAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111439088 383 - 210400635 AGCTCATGGCCTAGACAATTTCAGGTATTTTTTGAATGAGCATTTCTTCCTGTAAATGTCATCTTACAGATGGACACTTGCAGCAGCATTATTGAACTTTCCTCTTTGATTTATTAGTCCTGAAG---TCCAAGTGTCTCTGCACCTCTCAGGGATTCCCAAAACCTAACTTGAGTGCTCATTACCAATTATTTA--TCTTGCAAGTAGTTATAGTGac----acacacac--acacacacgtgcgcgtgcacacacgtgcgcatatacacatgtgtacactcgcacacatgcacacaAAAGCAGACAAA----TACCAGAGTCCTACAATCAGGGATGCACCAGAAAATAATGCAATTTTTGTTACACTCCATGATCTATTTTGCTAA--------------------CTTTTT-AAA i calJac3.chr1 C 0 C 0 s mm10.chr19 38081850 295 - 61431566 AGCTTGCTGCCTGGACAATTCCAAGGAAT------------CTTTCTTTGTA-GAATGTCTCTTGACACGT-----------GCAGTGTTCTGGTACTT-CCTCTTTGAACTATCAGCACTGGAGAAGCCCAGGCCTCTCTATTCCTCTTAAATATCTCAAAGAATTAAGTTGTTTTTCCATTACCAATCACTTAACTTTAACAAACAATTATCACAAC----AAACACAC----------ATAC----ACACACACAT---C-----------------------------------------------------CCAGTTTTACATAATCAGGG-TGTATCAGAAAGTA---GAATTTTTATTATGCTTTAAGTTCAATTTGGATGC--------------------TTTTTA-AAA i mm10.chr19 C 0 C 0 s canFam3.chr1 35325027 359 - 122678785 ATCTTATTGCCTAGCCAATTCCAAACATTTCCTGGGTGAGTCTATCTTTCCATAAATGTCATCT--------GACCTTT---GCAATGTCATTGAA-TTTCCTCTTTGATCTGTTAGTCCTGGAGGTATCCAAGTCTCTCTGCACCTCTTAGGGATCCCAAAGGCTTAAATTG-TTTCCCATTACCAGTTATTTA-CTCTGGCAAGTAG-TATGGTAAT----acacacac--acacacacacac----acacacagacgcac----------------------------acacaGGA------ACAGACATGCACCAGATTCACATAATCAGGGACACACCAGGAACTAAGGAAATATTCATTATACTCCATACCCTGTTATGCTAATGTTTTTTTAATTTttttattttttt-aaa i canFam3.chr1 C 0 I 200 a score=3356734.000000 s hg38.chr9_GL383541v1_alt 121576 960 + 171286 GGAGGATAAAATAAGCATtttatttattcatttggctttgatttaattatttatttatttatttattcattCGT---tt---tctttactcaaccagtgtttattaggtatatgctcagtacaaggaatataaaa-atgaatgaggctcagatcctacccttgaagaagaagagatcacagatgatagaagattg------agatatgtaa-------gcaactaactaccatgcaaTGTCATGTAAAGCCCACAGAAGGGCTACATAAAAAGACAGAGGAGTAGTTTTACCAGTTG---CTGT-AAAAAATAATGACAAATAGAGACCCAGCTGAGCCAGTGTTTAGACGGTTAAAATTCAGGCCATGCTGTATTCTAGAAAACTCCTGCTCATCACTCCACTCACCTCCCCCGACCCTACTTTATCCTCTATTAAC-AACATGAGTTGTTTA-GGAATCTGCC----------------------------------------------CATTCCTTTATAGTGAGTCTCTGCTTATACCT---------GAAT----------TGGTGCACGCCTCCTAGCAGATAAGGGTGCCCCTAGGAATTTGCCCTTTTCTTCTTTGGAGGCCAACTACCAAGCCGCCCAGCAACTGCACAGTTCCCC-ACAACCACTT-AGGGAAAAATGGATCTAGACCCAGTTGGGGCAGAGAAGTTCT--TACAGCACTCAGAAAGAACTAGTCATGGATTCAGCCCCAGTGCAGATGAGGAGACAGTATAGTTCAACACTAGAAAACTCTGGCTACATGTCTCAAAGTGGCCCTTAGTTCTTGGCAGGTCCCTGTTAGATAGAAATAGCTTCTCAGAGAGCAAAAGAACCATTTGACATCCATCATAGAAGCATGCATTGGGTAA-GCAGGAAACTAAAGTTCACTTACT--TATATA-ACATATACAGGTAGAAATAAACATACA------------AAAATATATTTAAGACAAGGGATAAAATGAGAAATCAGAGTTTCCCTCACTAGTCCCTACTGCTGAACTC-AAAATTCCACT s panTro4.chr9 68686988 960 + 137840987 GGAGGATAAAATAAGCATtttatttattcatttggctttgatttaattatttatttatttatttattcattCGT---tt---tctttactcaaccagtgtttattaggtatatgctcagtacaaggaatataaaa-atgaatgaggctcagatcctacccttgaagaagaagagatcacagatgatagaagatta------agatatgtaa-------gcaactaactaccatgcaaTGTCATGTAAAGCCCACAGAAGGGCTACATAAAAAGACAGAGGAGTAGTTTTACCAGTTG---CTGT-AAAAAATAATGACAAATAGAGACCCAGCTGAGCCAGTGTTTAGACGGTTAAAATTCAGGCCATGCTGTATTCTAGAAAACTCCTGCTCATCACTCCACTCACCTCCCCTGACCCTGCTTTATCCTCTATTAAC-AACATGGGTTGTTTA-GGAATCTGCC----------------------------------------------CATTCCTTTATAGTGAGTCTCTGCTTATACCT---------GAAT----------TGGTGCACGCCTCCTAGCAGATAAGGGTGCCCCTAGGAATTTGCCCTTTTCTTCTTTGGAGGCCAGCTACCAAGCCGCCCAGCAACTGCACAGTTCCCC-ACAACCACTT-AGGGAAAAATGGATCTAGACCCAGTTGGGGCAGAGAAGTTCT--TACAGCACTCAGAAAGAACTAGTCATGGATTCAGCCCCAGTGCAGATGAGGAGACAGTATAGTTTAACACTAGAAAACTCTGGCTACATGTCTCAAAGTGGCCCTTAGTTCTTGGCAGGTCCCTGTTAGACAGAAATAGCTTCTCAGAGAGCAAAAGAACCATTTGACATCCATCATAGAAGCATGCATTGGGTAA-GCAGGAAACTAAAGTTCACTTACT--TATATA-ACATATACAGGTAGAAATAAACATACA------------AAAATATATTTAAGACAAGGGATAAAATGAGAAGTCAGAGTTTCCCTCACTAGTCCCTACTGCTGAACTC-AAAATTCCACT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64842155 999 + 135191526 GGAGGATAAAATAAGCATtttatttattgatttggcttttat----ttatttatttatatgtttattcattCGT---tt---tctttactcaaccagtgtttattaggtatatgctcagtacgaggaatataaaa-atgaattaggctcagatcctacccttgaagaagaagagatcacagatgatagaagatta------agatatgtaa-------gcaactaactaccatgcaaTGTCATGTAAAGCCCACAGAAGGGCTACATAAAAAGACAAAGGAGTAGTTTTACCAGTTG---CTGT-AAAAAATAATGACAAATAGAGACCCAGCTGAGCCAGTGTTTAGACGGTTAAAATTCAGGCCATGCTGGATTCT----AACTCCTGCTCATCACTCCACTCATCTCCCCCCACCCTACTTTATCCTCTATTAACAAACATGGGTTGTTTA-GGAATCATTCCTTTATAGTGAGTTGTTTAGAATCATTATAGTGGGTTGTTTAGAATCATTCCTTTATAGTGAGTCTCTGCTTATACCT---------GAAT----------TGGTGCACGCCTCCTAGCAGATAAGGGTGCCCCTAGGAATTTGCCCTTTTCTTCTTTGGAGGCCAACTACCAAGCCGTCCAGCAACTGCACAGTTCCCC-ACAACCACTT-AGGGAAAAATGGATCTAGACCCAGTTGGGGCAGAGAAGTTCT--TACAGCACTCAGAAAGAACTAGTCATGGATTCAGCCCCAGTGCAGATGAGGAGACAGTATAGTTCAACACTAGAAAACTCTGGCTACATGTCTCAAAGTGGCCCTTAGTTCTTGGCAGGTCCCTGTTAGACAGAAATTGCTTCTCAGAGAGTAAAAGAACCATTTGACATCCATCATAGAAGCATACATTGGGTAA-GCAGGAAACTAAAGTTCACTTACT--TATATA-ACATATACAGGTAGAAATAAACATACA------------AAAATATATTTAAGACAAGGAATAAAATGAGAAATCAGAGTTTCCCTCACTAGTCCCTACTGCTGAACTC-AAAATTCCACT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57882011 940 - 122973662 GGAGGATAAAATAAGCATtttatttattcatttggctttgat----ttatttatttatatatttattcattCGT---tt---tctttactcaaccagtgtttattaggtatatgctcagtacaaggaatataaaa-atgaatgaggctcagatcctacccttgaagaagaagagatcacagatgatagaagatta------agatatgtaa-------gcaactaactaccatgcaaTGTCATGTAAAGCCCACAGAAGGGCTACATAAAAAGACAGAGGAGTAGTTTTACCAGTTG---CTGT-AAAAAATAATGACAAATAGAGACCCAGCTGAGCCAGTGTTTAGATGGTTAAAATTCAGGCCATGCTGGATTCT----AACTCCTGCTCATCACTCCACTCATCTCCCCCCACCCTACTTTATCCTCTATTAACAAACATGGGTTGTTTA-GGAATCTGCC----------------------------------------------CATTCCTTTATAGTGAGTCTCTGCTTATACCT---------GAAT----------TGGTGCACGCCTCCTAGCAGA------TGCCCCTAGGAATTTGCCCTTTTCTTCTTTGGAGGCCAACTACCAAGCCGCCCAGCAACTGCACAGTTCCCC-ACAACCACTT-AGGGAAAAATGGATCTAGACCCAGTTGGGGCAGAGAAGTTCT--TAAAGCACTCAGAAAGAACTAGTCATGGATTCAGCCCCAGTGCAGATGAGAAGACAGTATAGTTCAACACTAGAAAACTCTGGCTACATGTCTCAGAGTGGCCCTTAGTTCTTGGCAGGTCCCTGTTAGACAGAAATAGCTTCTCAGAGAGTAAA--GACCCATTGACATCCATCATAGAAGCATGCGTTGGGTAA-GCAGGAAACTAAAGTTC----ACT--TATATA-ACATATACAGGTAGAAATAAACATACA------------AAAATATATTTAAGACAAGGGATAAAATGAGAAGTC--AGTTTCCCTCACTAGTCCCTACTGCTGAACTCAAAAATTCCACT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79811785 945 + 112192347 GGAGGATATAATAAGCATtttatttattcatttggct---------ttatttatttatttatatacttattcat---tt---tctttactcacccagtgtttattaggtacatgctcagtacaaggaatataaaa-atg----aggctcagatcctacccttgaggaagaagagatcacagatggtagaagatta------agatacataa-------gcaactaactaccatgcaatgtcatgtaaagcccatggaagggctacataaaaagacagaggagTAGTTTTACCAGTTG---CTGT-AAAAAATAATGGCAAATAGAGACCCAGCTGAGCCACTGTTTAGATGGTTAAAATTCAGGCCATGCTGGATTCT----AACTCCTGCTCATCACTCCACTCATCTCACCCCACCCCACTTTATCCTCTATTAACAAACATGGGTTGTTTA-GGAATCTGCC----------------------------------------------CATTCCTTTACAGTGAGTCTCTGCTTATACCT---------GAAT----------TGGTGCACACCTCCTAGCAGATAACGGTGCCCCTGGGAATCTGCCCTTTTCTTTTCTGGAGGCCAGCTACCAAGCCGCCCAGCAACTGCACAGTTCCCC-ACAACCACTT-AGGGAAAAATGGATCTAGACCCAGTGGGGGCAGAGAAGTTCT--TACAGCACTCAGAAAGAACAAGTTATGGATTCAGCCCCAGTGCAGATGAGGAGACAGTACAGTTCAACACTAGAAAACTCTGGCTACCTGTCTCAAAGTGGCCCTTAGTTCTTGGCAGGTCCCTGTTACACAGAAATAGCTTCTCAGAGAGTCAAAGAACCATTTGATATCCACCATAGAAGCATGCATTGGGTAAGGCAGGAAACTGAAGTTCACTTACT--TATATA-ACATATACAGGTTGAAATAAACATACA------------AAAATATATTTAAGACAAGGGATAAAATGAGAAGTCAGAGTTTCCCTCACTAGTCCCTACTGCTGAACTC-AAAATTCTACT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80891722 945 + 112612857 GGAGGATATAATAAGCATtttatttattcatttggct---------ttatttatttatttatatacttattcat---tt---tctttactcacccagtgtttattaggtacatgctcagtacaaggaatataaaa-atg----aggctcagatcctacccttgaggaagaagagatcacagatggtagaagatta------agatacataa-------gcaactacctaccatgcaatgtcatgtaaagcccatggaagggctacataaaaagacagaggagTAGTTTTACCAGTTG---CTGT-AAAAAATAATGGCAAATAGAGACCCAGCTGAGCCACTGTTTAGATGGTTAAAATTCAGGCCATGCTGGATTCT----AACTCCTGCTCATCACTCCACTCATCTCACCCCACCCCACTTTATCCTCTATTAACAAACATGGGTTGTTTA-GGAATCTGCC----------------------------------------------CATTCCTTTACAGTGAGTCTCTGCTTATACCT---------GAAT----------TGGTGCACACCTCCTAGCAGATAACGGTGCCCCTGGGAATTTGCCCTTTTCTTTTCTGGAGGCCAGCTACCAAGCCGCCCAGCAACTGCACAGTTCCCC-ACAACCACTT-AGGGAAAAATGGATCTAGACCCAGTGGGGGCAGAGAAGTTCT--TACAGCACTCAGAAAGAACGAGTTATGGATTCAGCCCCAGTGCAGATGAGGAGACAGTACAGTTCAACACTAGAAAACTCTGGCTACCTGTCTCAAAGTGGCCCTTAGTTCTTGGCAGGTCCCTGTTACACAGAAATAGCTTCTCAGAGAGTAAAAGAACCATTTGATATCCACCATAGAAGCATGCATTGGGTAAGGCAGGAAACTGAAGTTCACTTACT--TATATA-ACATATACAGGTTGAAATAAACATACA------------AAAATATATTTAAGACAAGGGATAAAATGAGAAGTCAGAGTTTCCCTCACTAGTCCCTACTGCTGAACTC-AAAATTCTACT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76941228 945 + 107442819 ggaggatataataagcattttatttatttatttggct---------ttatttatttatttatatacttattcat---tt---tctttactcacccagtgtttattaGGTACATGCTCAGTACAAGGAATATAAAA-ATG----AGGCTCAGATCCTACCCTTGAGGAAGAAGAGATCACAGATGGTAGAAGATTA------AGATACATAA-------GCAACTAACTACCATGCAACGTCATGTAAAGCCCATGGAAGGGCTACATAAAAAGACAGAGGAGTAGTTTTACCAGTTG---CTGt-aaaaaataatggcaaatagAGACCCAGCGGAGCCACTGTTTAGATGGTTAAAATTCAGGCCATGCTGGATTCT----AACTCCTGCTCATCACTCCACTCATCTCACCCCACCCCACTTTATCCTCTATTAACAAACATGGGTTGTTTA-GGAATCTGCC----------------------------------------------CATTCCTTTACAGTGAGTCTCTGCTTATACCT---------GAAT----------TGGTGCACACCTCCTAGCAGATAACGGTGCCCCTGGGAATTTGCCCTTTTCTTTTCTGGAGGCCAGCTACCAAGCCGCCCAGCAACTGCACAGTTCCCC-ACAACCACTT-AGGGAAAAATGGATCTAGACCCAGTGGGGGCAGAGAAGTTCT--TACAGCACTCAGAAAGAACGAGTTATGGATTCAGCCCCAGTGCAGATGAGGAGACAGTACAGTTCAACACTAGAAAACTCTGGCTACCTGTCTCAAAGTGGCCCTTAGTTCTTGGCAGGTCCCTGTTACACAGAAATAGCTTCTCAGAGAGTAAAAGAACCATTTGATATCCACCATAGAAGCATGCATTGGGTAAGGCAGGAAACTGAAGTTCACTTACT--TATATA-ACATATACAGGttgaaataaacataca------------aaaatatatttaagacaaGGGATAAAATGAGAAGTCAGAGTTTCCCTCACTAGTCCCTACTGCTGAACTC-AAAATTCTACT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81205704 940 + 108555830 GGAGGATATAATAAGC-----atttattcatttggct---------ttatttatttatttatttattcattcat---tt---tctttactcacccagtgtttattaggtacatgctcagtacaaggaatataaaa-atg----aggctcagatcctacccttgaggaagaagagatcacagatggtagaagatta------agatacataa-------gcaactaactaccatgcaaTGTCATGTAAAGCCCACGGAAGGGCTACATAAAAAGACAGAGGAGTAGTTTTACCAGTTG---CTGT-AAAAAATAATGGCAAATAGAGACCCAGCTGAGCCACTGTTTAGATGGTTAAAATTCAGGCCATGCTGGATTCT----GACTCCTGCTCATCACTCCACTCATCTCACCCCACCCCACTTTATCCTCTATTAACAAACATGGGTTGTTTA-GGAATCTGCC----------------------------------------------CATTCCTTTATAGTGAGTCTCTGCTTATACCT---------GAAT----------TGGTGCACACCTCCTAGCAGATAACGGTGCCCCTGGGAATTTGCCCTTTTCTTTTCTGGAGGCCAGCTACCAAGCCGCCCAGCAACTGCACAGTTCCCC-ACAACCACTT-AGGGAAAAATGGATCTAGACCCAGTGGGGGCAGAAAAGTTCT--TACAGCACTCAGAAAGAACGAGTTATGGATTCAGCCCCAGTGCAGATGAGGAGACAGTACAGTTCAACACTAGAAAACTCTGGCTACCTGTCTCAAAGTGGCCCTTAGTTCTTGGCAGGTCCCTGTTACACAGAAATAGCTTCTCAGAGAGTAAAAGAACCATTTGATATCCACCATAGAAGCATGCATTGGGTAAGGCAGGAAACTGAAGTTCACTTACT--TATATA-ACATATACAGGTTGAAATAAACATACA------------AAAATATATTTAAGACAAGGGATAAAATGAGAAGTCAGAGTTTCCCTCACTAGTCCCTACTGCTGAACTC-AAAATTCTACT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111439471 947 - 210400635 GGAGAATAAAATAAGCATtttgtttattcatttggctt--------tcatttatttatttatttattcatttat---tt---tctttactcaaccagtatttattaggtatacactcaatacaagaaatatacag-atgaatgagagtcagtccctacccttgaggaagaagagatcacagatgat---agatta------agatatgtaa-------gcaactaactaccatgcagtgtcatgtaaagcccatggaagggctacataaaaagacagaggagTAGTTTTACCAG-TG---CTGTAAAAAAATAATGATAAATGGAGATGCACCTGAACCAGTGTTTAGAGGGTTAAAATTCAGGCCATGCTGTATTCT----AACTCCTGCTCATCACTCCACCCACCTCTCCCTACCCTACTTTAATCTCTGTTGACAAATATGGGTTGTTTAGGGAATCTGCT----------------------------------------------CGTTCCTTCATATTGAGTCTCTGCTTATACCT---------GAAT----------TGGTGCATGCCTTCTAGCAGATAAGAGTGCCCCACAGAATTTGCCCTTGTCTTCTCTGAAGGCCAACTACCGAGCTGCCCAGCAACTGCACAGTTCCCC-ACAACCACTT-AGGGGAAAATGGACCTAGACCCAGCAGGGGCAGAGAAACTCT--TATAGTACTCACAAAGAACTAGTCATGGATTCAGCCCCAGTGCAGATGAGGAGACAGTA-AGTTCAACACTGGAAAACTCTGGCTATGTGCCTAAAAGTGGCCCTTAGTTCTTGGCAGGTCCCTGTTACACAGAAATAGCTTCTCAGAGAGTGAGATAGCCATTTGACATCCACCTTAGAGACATGCATTGGGTAAGGCAGAAAACTAAATTTCACTTACT--TATATA-ACGTATGCAGATGGAAATAAACATACA------------AAAATAGATTTAAGACAAGGGATAAAATGAGAAGCCAGAGTTTCCCTTACTACTTCCTACTACTGAACTC-AAAATGCTACT i calJac3.chr1 C 0 C 0 s mm10.chr19 38082145 893 - 61431566 GGAAATATTTGTAAGCATTTT-TTAACTTATTTAGATT--------ACATGTCTTTATTCATTCACCCATGTGTCTGtt---ccttttttcagccatcatttattctgtatatgtttgatgcaagggatataaaagataaacaagtctcagatcctactcatgag---tctgaggtcacaAGAGATAGCAGGTTG------AGATACCTAAGGTTGTGGCAAT--ACATTCAGTAAATGTCACT---ATCCCA---AAGGATTCCTCAGAAAGTTACAAATGTGGTTCCACTGATTG---TTAC-TGAAAATAATGTC--ATCTAGACTTGGCAGTGCTAATGTTTGGAAGGTCAAGGTTCAAGCCACAGTGCCTTCT----AACCCCTGTTC---------CTCCTCTCCTCCG---------TAACCTCTACTGCCAAGC-TGAGCTGTTCA-GGAATCTGCT----------------------------------------------CCATCCTTTAGAGTGAGTCTCTGCTCTTACCT---------GACTCCCATGAAGCTAGAACAAGCCTCCCAGCAGATAAGGGTGTCCCAGAGCTTCTGCCCTTTTCTTCTTTGGAAGCTGAGCACCAAGAAGCCCAACTACTGTGCAAGTTCCT--CAGCCAGTGAAGGGAAAATTGGAGCCAGACCCAGTCAGGATAGAGGAATTAGGATAGAGCACCTAGAAGGAACTAGGCATGCATT-----------TAGATGGA----------AGTTCAACG-TGGAAA-------------------------CCCCCAGGTTCTAGAAGATTCCTGCTGGGAAGAACTAGCTCCTCAAACTGGGAGAGAAGCATTCATAACTCATGAGAGAGG-GTGCGGCGGGTAG-GC-GGGAATTGAAGCTGGCTTCTTACTGTATATACACATGTGGATCGACGTGTTCGTATGTTATGTTTTCGTGAAAGCTACTTAAGACAAGGAATACAATGAAGAGCCAG------------TGCCCTCTACTCCTGAACAC-AAACTCTAACT i mm10.chr19 C 0 I 704 s canFam3.chr1 35325586 904 - 122678785 GGGGGATATAATAAGGATTTTACTCATTCATTTGACTt--------tcatttgtttattcattcatccattcat---tTatccctttattcaaccagaatttattagatacatgctcagggcaggagttataaag-atgagtgaggctcagaccctgcccttgag---gaggagatcacagacaacagaagactaaaatacagatacgtaa-------gcaactaacaacagtccaaTCTCACT---GTCTCATGGAAGGGTCTCATTGAGAAAAATAGAA-TAGTTCAACTAATTGGACATTT-AAAAAATAATAACAAGTAGAGACCCAGC----CTGATGAGTGGATGGTT-AGGTTCAGGCTGT-CTGGATTCT----AATTCTTGCTCATGCCCCCACCCACCCTACTTCATCC-----TGTCCCCCCATAAC-----------CTCTA-GAAACCTGCC----------------------------------------------CGCTCCTTTAGAGTGTGTCCCTGCTTTTACCTGATGCCATGGAAT----------GGGAGCAAGCCCCTCAGCCAGTGAGGACTCCCTGCACAACTTGCCGTTTGTCTCTTGGGCTGCC--TTCCAGACCCTCCCAGCAGCTGCTTTATTCCCTTCCGACCACAT-GAGGAAAAAGGGATCTGTACCC-TTGGGGGCAGGGAAGTTCT--TTCAGC-CTTGGAAGGAATTAGTCATACATCTGGCCCCAACACCCAAGAGGAGAAAGTACAGTTCACCACCAGAAAACTC--GACATACGTCTCAAGGTGGCCTGTAGTTCTTGGCAGGTCCCTGCTGAACAGAACCAGCTCCTCAGAGAGGGAGAGAGCCATTTGACAGCCACCATGGGGG-------------------------------CCCTTACT--TATGTA-acatatacaggtggaagtaag-atgca------------aatg-acgtttcagggaagggataaaatgaaaagtcagagttgcccttactactccgtcctcctgaattc-aaactccaatt i canFam3.chr1 I 200 I 3 a score=1852401.000000 s hg38.chr9_GL383541v1_alt 122536 659 + 171286 TCCAgtcaggagtagtggctcacacctgaagtcacaacactctgggagactgaggcgagtcgatcaccttaggtcaggagttcgagaccagcctggccaacacggcaaaaccccatctctactaaaaaaa-tacaaaaattagccaggcatggtggcacgtgcctgtaatcccagctacccatgaggctgagacaggagagtcacttgaacccaggaggcggaggttgcagtgagccaagatcacgccactgcactccagcctgggcaacagagcaagactccatctaaaaataaataaataaaCATCAAGACTAACTGCCTCATTTggttg----ggtgtggtggctcacgcctgtaatcctagcacttcggaaggccaaggcaggcatatcacctgtggtcaggagttcgagaccagcctggccaacatggtgaaa-ccccatctccactaaaaatacaaaaa-ttagtcaggctgggtggtacacacctgtagtcccagctactcaggaggctgaggcacaagaatcgcttgtgccaccaggaggtggaggttgcagtgagccaagatcatgccactgtgctccagcctgggtaacaaagcaagattccatctcaaaaaataaataaataaaTACATAA----ATATTTAAAATTCTACTTCCACTT s panTro4.chr9 68687948 659 + 137840987 TCCAgtcaggagtagtggctcacacctgaagttacaacactctgggagaccgaggcgagtcgatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaaaa-tacaaaaattagccaggcatggtggcacgtgcctgtaatcccagctacccatgaagctgagacaggagagtcacttgaacccaggaggcggaggttgcagtgagccaagatcacgccactgcactccagcctgggcaacagagcaagactccatctaaaaataaataaataaaCATCAAAACTAACTGCCTCATTTggctg----ggtgtggtggctcacgcctgtaatcctagcacttcggaaggccaaggcaggcatatcacctgtggttaggagttcgagaccagcctggccaacatggtgaaa-ttccatctccactaaaaatacaaaaa-ttagtcaggctgggtggtacacacctgtagtcccagctactcaggaggctgaggcacaagaatcgcttgtgccaccaggaggtggaggttgcagtgagccaagatcatgccactgtgctccagcctgggtaacaaagcaagattccatctcaaaaaataaataaataaatacataa----ataTTTAAAATTCTACTTCCACTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64843154 657 + 135191526 TCCagtcaggagtagtggctcacacctgaagtcacaacactctgggagaccgaggcgagtggatcacctgaggtcaggagttcgagaccagcctggccaacatggcgaaaccccatctccactaaaaaaa-tacaaaaattagccaggcatggtggcatgtgcctgtaatcccagctactcatgaggctgagacaggagaatcacttgaacccaggaggcggaggttgcagtgagccaagatcacgccactgcactccagcctgggcaatagagcaagactccatctaaaaataaataaataaaCATCAAGACTAACTGCCTCATTTggctg----ggtgtggtggctcacgcctgtaatcctagcactttggaaggccaaggcagggatatcacctgtggtcaggagttcaagaccagcctggccaacgtggtgaaa-ccccatctccactaaaaatacaaaaa-ttagtcaggctgggtggtacatacctgtagtcccagctactcaggaggctgaggcacaagaatcgcttgaac--ccgggaggtggaggttgcagtgagccaagatcatgccactgcgctccagcctgcgtaacaaagcaagattccatctcaaaaaataaataaataaatacataa----ataTTTAAAATTCTACTTCCACTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57882951 649 - 122973662 TCCAgccaggagtagtagctcacacgtgaagtcacaacactctgggaggccgaggtgagtggatcacctgaggtcaggagtttgagaccagcctggccaacatggcgaaaacccatctctactaaaaaaa-tacaaaaattagccgggcatggtggcacatgcctgtaatcccagctactcatgaggctgagacaggagaattac-tgaacccaggaggcagagtttgcagtgagccaagatgacgccactgcactccagcctgggcaatagagcaagactccatctaa----aaacaaataaaCATCAAGACTAACCGCCTCATTTggctg----ggtgtggtggctcatgcctgtaatcctagcactttggaaggccaaggcaggcatatcacctgtggtcaggagttcaagaccagcctggccaacatggtgaaacccccatctccactaaaaatataaaaa-ttagccaggctgggtggtacacacctgtagtcccagccactcaggaggctgaggcacaagaatcgcttgaac--ccaggaggtggaggttgcagtgagccaagatcgtgccactgcgctccagcctgggtaacaaagcaagattccatctcaaa----aaacaaataaaTACATAA----ATATTTAAAATTCTACTTCCACTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79812730 641 + 112192347 TCCAgccaggtgtagtggctcac----------acaacactctgggaggctgaggcgagtggatcacctgaggtcaggagttcgagaccagcctggccaacacggtgaaaccccatctctactaaaaaaattacaaaaattagccaggcatggtggcatgtgcctgtaatcccagctgctcattaggctgagacaggcgaattgcttgaacccaggaggcggaggttgcagtgagccaagatcatgccactgcactccagcctgggcaacagagcaagactccatctca----aaataaacaaaCAGTAAGACTAACTGCTTCATTTGGCTggccaggcatggtggctcatgcctgtaatcccagcactttggaaggccaaggcaggcatatcacctgtggtcaggagtttgagacaagcctggccaacatggtgaaa-ccccatctccactaaaaatacaaaaa-ttagccaggttgggtggtacacacctgtagtcccagcttctcagtaggctgaggcacaagaatcgcttgaac--cctggaggtgaaggttgcagtgagccaagatcgtgccactatgctccagcctgggtaacaaagcaagattccatctca------aaataaataaataaataa----ataTTTAAAATTC-ACTTCCACCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80892667 633 + 112612857 TCCAgccaggtgtagtggctcac----------acaacactctgggaggctgaggcgagtggatcacctgaggtcaggagttcgagaccagcctggccaacacggtgaaaccccatctctactaaaaaaattacaaaaattagccaggcatggtggcatgtgcctgtaatcccagctactcattaggctgagacaggcgaattgcttgaacccaggaggcggaggttgcagtgagccaagatcatgccactgcactccagcctgggcaacagagcaagactccatctca----aaat----aaaCAGTAAGACTAACTGCTTCATTTggctg----ggtgtggtggctcacacctgtaatcccagcacttcagaaggccaaggcaggcatatcacctgtggtcaggagttcgagacaagcctggccaacatggtgaaa-ccccatctccactaaaaatacaaaaa-ttagccaggttgggtggtacacacctgtagtcccagcttctcagtaggctgaggcacaagaatcgcttgaac--cctggaggtgaaggttgcagtgagccaagatcgtgccactatgctccagcctgggtaacaaagcaagattccatctca------aaataaataaataaacaa----aTATTTAAAATTC-ACTTCCACCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76942173 634 + 107442819 tccagccaggtgtagtggctcac----------acaacactctgggaggctgaggcgagtggatcacctgaggtcaggagttcgagaccagcctggccaacacggtgaaaccccatctctactaaaaaaattacaaaaattagccaggcatggtggcatgtgcctgtaatcccagctactcattaggctgagacaggcgaattgcttgaacccaggaggcggaggttgcagtgagccaagatcatgccactgcactccagcctgggcaacagagcaagactccatctca----aaataaacaaacagtaaGACTAACTGCTtcatttggctg----ggtgtggtggctcacacctgtaatcccagcacttcagaaggccaaggcaggcatatcacctgtggtcaggagttcgagacaagcctggccaacatggtgaaa-ccccatctccactaaaaatacaaaaa-ttagccaggttgggtggtacacacctgtagtcgcagcttctcagtaggctgaggcacaagaatcgcttgaac--cctggaggtgaaggttgcagtgagccaagatcgtgccactatgctccagcctgggtaacaaagcaagattccatctca------aaataaat---taaataa----atatttaaaattc-acttcCACCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81206644 641 + 108555830 TCCAgccaggtgtagtggctcac----------acaacactctgggaggctgaggcgagtggatcacctgaggtcgggaattcgagaccagcctggccaacatggcaaaaccccatctctactaaaaaaattacaaaaattaggcaggcatggtggcatgtgcctgtaatcccagctactcattaggctgagacaggcgaattgcttgaacccaggaggtggaggttgcagtgagccaagatcatgccactgcactccagcctgggcaacagagcaagactccatctca----aaataaacaaaCATTAAGACTAACTGCTTCATTTggctg----ggtgtggtggctcacacctgtaatcccagcacttcagaaggccaaggcaggcatatcacctgtggtcaggagttcgagaccagcctggccaacatggtgaaa-ccccatctccactaaaaatacaaaaa-ttagccaggttgggtggtacacacctgtagtcccagcttctcagaaggctgaggcacaagaatcgcttgaac--ccgggaggtgaaggttgcagtgagccaagatcgtgccactatgctccagcctgggtaacaaagcaagattccatctca------aaataaataaataaataaaTACATATTTAAAATTC-ACTTCCACCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111440418 644 - 210400635 TCCAgccaggtgaagtggctcacacctgtaatcccaacactttgggaggcctgggcgagtggagcacctgagatcaggagtttgacactagcctggccaacatagcaaaaccccatctctactaaaaaaa-tataaaaattagccaggcatggtggagcgtgcctgtaatcccagctacttgggaggctgagacgggagaatcgcttgaacccgggaggcagaggttgcagtgagctgagatcatgccactgcagtccagcttgggcaacagagcaagactccatctcaaaataaataaataaaCTTCAAGACTAACCTCCTCATTTggcca----ggtgtggtggctcacacctgtaatctcagcacttcgggaggccaaagcaggaggatcacctacagtcaggagtttgagaccagcctgaccaacatggtaaaa-ccccatctgtactaaaattacaaaaagttatccaggcatggtggcacatgcctgtagtccca--tactcaggaggctgagtcacaggagtcacttgaac--ctgggaagcaaagtttgcagtgagccaagatcatgccactgcacttcagcctgggtgacaaagcaagattccatctca------------gtaaataaataa----aTATTTAAAATTCCATTTATACTT i calJac3.chr1 C 0 C 0 e mm10.chr19 38083038 704 - 61431566 I e canFam3.chr1 35326490 3 - 122678785 I a score=2218846.000000 s hg38.chr9_GL383541v1_alt 123195 646 + 171286 CTTGTTTTTCTGATGGTTTTTCTTCCTGATTCActgatggcttcctctataactc----ta---tatttccacctctgtttcttgattcattaaccttagctgtgttggctgactccctactatgaaagagaagga---------acttatactattccttc---------tgcttttctctctcttcctcgtaatttttagttttgtttttattttgaaca-tttttcttggttccctttacaactttagtacactaaaccatttatttttggatccataaactttagacagtgtctcttgacaccccaccatgttaaaatgaataaatctcccccgaccccgcatttcccttcacctctcttacccccttgacttcccaaattctcccagatacacaattactgaactttcacattgttatggcgtagaacatttatattcctacagttaagccttctgtg-tttgcttattgcatgattTCCCTATGAGGGCGCCCTTGGCATTTTGAAGAGGACAGTTGTGCCTTTGCAGTGAGAACATTTCTCACCTTACTGGATGTTTAGCATCTGTGATTAttgcaacaaccaaaattatttccacacatttccaaatggccctagaggtgtcatcctatccttggatgagaaccattgGTCTTTAAATTGAATCT s panTro4.chr9 68688607 650 + 137840987 CTTGTTTTTCTGATGGTTTTTCTTCCTCATTCActgatggcttcctctataactctaaata---tatttccacctctgtttcttgattcattaaccttagctgtgttggctgactccctactatgaaagagaagga---------acttatactattccttc---------tgcttttctctctcttcctcgtaatttttagttttgtttttgttttGAACA-tttttcttggttccctttacaactttagtacactaaaccatttatttttggatccataaactttagacagtgtctcttgacaccccaccatgttaaaatgaataaatctcccccgaccccgcatttctcttcacctctctaacccccttgacttcccaaattctcccagatatacaattactgaactttcacattgttatggcatagaacatttatattcctacagttaagccttctgtg-tttgcttattgcatgattTCCCTATGAGGGCCCCCTTGGCATTTTGAAGAGGACAGTTGTGCCTTTGCAGTGAGAACATTTCTCACCTTACTGGATGTTTAGCATCTGTGATTAttgcaacaaccaaaattatttccacacatttccaaatggccctagaggtgtcatcctatccttggatgagaaccattgGTCTTTAAATTGAATCT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64843811 651 + 135191526 CTTGTTTTTCTGATGGTTTTTCTTCCTGATTCACTGATGGCTTTCTCTATAACTCTAAATA---TATTTCCACCTCCATTTCTTGATTCAttaaccttagctgtgttggctgactccctacgatgaaagagaagga---------acttatactattccttc---------tgcttttctctctcttcctcgtaatttttagttttgtttttattttgAACC-TTTTTCTTGGTTCCCTTTACAACTTTAGTACACTAAACCATTtatttttggatccataaactttagacagtgtctcttgacaccccaccatgttaaaatgaataaacctcccccgatcctgcatttcccttcacctctcttacccccttgacttcccaaattctcccagatatacaattactgaactttcacattgttatggcatagaacatttatattcCTACAGTTAAGCCTTCTGTGCTTTGCTTATTGCATGATTTCCCTATGAGGGCCCCCTTAGCATTTTGAAGAGGACAGTTGTGCCTTTGCGGTGAGAACACTTCTCACCTTACTGGATGTTTAGCATCTGTGATTATTCCAacaaccaaaattatttccacacatttccaaatggccctagaggtgtcatcctatccttggatgagagccattgGTCTTTAAATTGAATCT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57883600 651 - 122973662 CATGTTTTTCTGATGGTTTTTCTTCCTGATTCActgatggcttcttctataactctaaata---tatttccacctccatttcttgattcattaaccttaactgtgttggctgactccctactatgaatgagaagga---------acttatactattctttc---------tgcctttctctctcttcctcataatttttagttttgtttttattttgaaca-tttttcttggttccctttacaactttagcacactaaaccatctatttttggatccataaactttagacagtgtctcttcacaacccaccgtcttaaaatgaataaatctcccccaaccccgcatttcccttcacctctcttacccccttgacttcccaaattctcccagatatacaattactgaactttcacattgttacagtgtagaacatttatattcctacagttaagccttctgtgctttgcttattgcatgattTCCCTATGAGGACCCCCTTGGCATTTTGAAGAGGACAGTTGTGCCTTTGTGGTGAGAACATTTCTCACCTTACTGGATGTTTAGCATCTGTGATTATTGCAACAACCAAAATTATTTCCACACATTTCCAAATGGCCCTAGACGTGTCATCCTATCCTTGGATGAGAACCATTAGTCTTTAAATTGAATCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79813371 660 + 112192347 CTTGTTTTTCTGATGGTTTTTCTTCCTGATTCActgatggcttcctctataactctaaata---tatttccacctccatttcttgattcattaaccttaactgtgttggctgactccctactatgaaagagaagga---------acttacactattccttctattccttgtgcttttctctctcttcctcaaaatttttagttttgtttttattttgaacattttttcttggttccctttacaactttaatatactaaaccatctatttttggatccataacctttagacagtgtctcttgacaccccaccatgttaaaatgaataaatct-ccccgaccccgcatttcctttcacctctcttacccccttgacttcccaaattctcccagatatacagttactgaactttcacattgttatggcttagaacatttatatttctacagttaagccttctgtgctttgcttatggcataattTCCCTATGAGGGCCCCCTTGGCATTTTGAAGAGGACAGTTGTGCCTTTGTGGTGAGAACATTTCTCACCTTCCTGGATGTTTAGTATCTGTGATTACtgcaaaaaccaaaattatttccacacatttccaaatggtcctagaggtgtcatcctatccttggatgagaaccattgGTCTTTAAATTGAATCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80893300 660 + 112612857 CTTGTTTTTCTGATGGTTTTTCTTCCTGATTCActgatggcttcctctataactctaaata---tatttccacctccatttcttgattcattaaccttaactgtgttggctgactccctactatgaaagagaagga---------acttacactattccttctattccttgtgcttttctctctcttcctcaaaatttttagttttgtttttattttgaacattttttcttggttccctttacaactttaatatactaaaccatctatttttggatccataacctttagacagtgtctcttgacaccccaccatgttaaaatgaataaatct-ccccgaccccgcatttcccttcacctctcttacccccttgacttcccaaattctcccagatatacagttactgaactttcacattgttatggcttagaacatttatatttctacagttaagccttctgtgctttgcttatggCATAATTTCCCTATGAGGGCCCCCTTGGCATTTTGAAGAGGACAGTTGTGCCTTTGTGGTGAGAACATTTCTCACCTTCCTGGATGTTTAGCATCTGTGATTACTGCAAAAACCAAAATTATTTCCACACATTTCCAAATGGTCCTAGAGGTGTCATCCTATCCTTGGATGAGAACCATTGGTCTTTAAATTGAATCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76942807 659 + 107442819 CTTG-TTTTCTAATGGTTTTTCTTCCTGATTCACTGATGGCTTCCTCTATAACTCTAAATA---TATTTCCACCTCCATTTCTTGATTCATTAACCTTAACTGTGTTGGCTGACTCCCTACTATGAAAGAGAAGGA---------ACTTACACTATTCCTTCTATTCCTtgtgcttttctctctcttcctcaaaatttttagttttgtttttattttgaacattttttcttgGTTCCCTTTACAACTTTAATATACTAAACCATCTATTTTTGGATCCATAACCTTTAGACAGTGTCTCTTGACACCCCACcatgttaaaatgaataaatct-cCCCGACTCTGCATTTCCCTTCACCTCTCTTACCCCCTTGACTTCCCAAATTCTCGCAGATATACAGTTACTGAACTTTCACATTGTTATGGCTTAGAACATTTATATTTCTACAGTTAAGCCTTCTGTGCTTTGCTTATGGCATAATTTCCCTATGAGGGCCCCCTTGGCATTTTGAAGAGGACAGTTGTgcctttgtggtgagaacatttctCACCTTCCTGGATGTTTAGCATCTGTGATTACtgcaaaaaccaaaattatttcCACACATTTCCAAATGGTCCTAGAGGTGTCATCCTATCCTTGGATGAGAACCATTGGTCTTTAAATTGAATCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81207285 660 + 108555830 TTTGTTTTTCTGATGGTTTTTCTTCCTGATTCActgatggcttcctctataactctaaata---tatttccacctccatttcttgattcattaaccttaactgtgttggctgactccctactatgaaagagaagga---------acttatactattccttctattccttgtgcttttctctctcttcctcataatttttagttttgtttttattttgaacattttttcttggttccctttacaactttaatatactaaaccatctatttttgggtccataacctttagatagtgtctcttgacaccccaccatgttaaaatgaataaatct-ccccgaccccgcatttcccttcacctctcttacccccttgacttcccaaattctcccagatatacagttactgaactttcacattgttatggcttagaacatttatatttctacagttaagccttctgtgctttgcttatggcataattTCCCTATGAAGGCCCCCTTGGCATTTTGAAGAGGACAGTTGTGCCTTTGTGGTGAGAACATTTCTCACCTTCCTGGATGTTTAGCATCTGTGATTACTGCAAAAACCAAAATTATTTCCACACATTTCCAAATGGTCCTAGAGGTGTCATCCTATCCTTGGATGAGAACCATTGGTCTTTAAATTGAATCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111441062 650 - 210400635 CTTGTTTTTCTGATGGCTTTTCTTCCTGATTCACCGATGGCTTCCCCTATAACTCTAAATA---TATTTCCACCTGCATTTCTTCATTCATTAACCTTAACTGTGTTGGCTGACTTTGTATTATGAAAGAGAAGGA---------ATT-----TATTCCTTCTATTGCTTCTGCTTTTCTCTCTCTTCCTCATAatttttagttttgtttttattttta----tttGTCTTGGTTCCCTTTAGAGCTTTAGTACACTCAACCATTTATTTTTGGATCCATAaacttttgacagcatctcttgacaccccaccatgttaaaatgagtaaatctctccctaccccacgcttcccttcacctctctta-ccctttgatttcccaaattctcccagttatactattactgaactttcatactgttatggcttagaatatttatattcCTAGAGTTAAGCCTTCTGCGCTTTGCTTATGGCACGATTTCCTTATGTGGGTCCCCTTGGCATTTTGAAGAGGACAGTTGTGCCTTTGAGGTGAGGCCTTTTCTCACATTACTGGATTTTTAGCATCTGTGATTATTGCAAAAACCAAAATTATTTCCACACATTTCTAAATGGCTCTAGAGGTGCCATCCTATTTTTGGATGAGAACTATTGGTC-TTAAATTGAATCt i calJac3.chr1 C 0 I 730 s canFam3.chr1 35326493 630 - 122678785 cctctttttctggtgg-ttttcttcctgatttgggaatattttcctctttaattttaaatattgtatttccacatccatttcttgattcattaacttgaatagtgt--------tccctgcgaggaaagataaggactttagcttacttatactattccttc---------tccttttttctctct---tcacaatttttggttata-ttgtatttt------tcacttttggtgctctttacaactttaatacatgtaaccatctatatttggacccgtaaactctagatagtgtctcttaacagcctcctatg-taagatgaatgaatct-tcaca--tctacatctcccttcacctgtcttg-ccccttctcttgtcaccgtctctaagccatacaat-----agcttttacattgtcatggcttagaatatttatgttcctacagtgaaggcttctg-gtgttgccaatggctggatATCCA-GTGTGGGTCGCCTTGGCATTTGGAAGACGACAGTTCTGCCTTC-CGGTAGGGGCGTCCCTCACAATACTCGGTTTTTCACATCTGCAAGTAATGCAAC--CCCAGATtatttccacacatttccaaatggccccagaagtgccaaaccatccttggatgagaaccattgGTCTATAAGTTGATGCT i canFam3.chr1 I 3 C 0 e mm10.chr19 38083038 704 - 61431566 I a score=1734740.000000 s hg38.chr9_GL383541v1_alt 123841 498 + 171286 GACAATTGAAATTAAAAACCATCCTCACCTGCCATTCATTCTTGCTCCCCTGCAATCTGT-CTCTGTCCAGCTGTAGAGTTATCGTG-----------CTGCAACCCTC----CTCTGCAGGGACCCTTTGGCTTCCTATTGCTTTTAGAGAAAAG-----Gcatgctctagcatcagccacctccccaggtttacgtcttgcattttccattctaatcacactgagcaatcagttcctgggacacactctgctctctcctaccttagattattgcattccctgttgcctctgcctacactcttcttatttagatctcagcttaaacatcacttcctcagagaatccttctctgaccccactctccacttctatccagcatggccaggttagggttccct-ggcatcctatgcttcccctccatcatCTTGGAGacagcataacatagtgattaggagaacagacacagcaatctctctagttttaaaccccaagtctgccacttactagctttgcaatc s panTro4.chr9 68689257 498 + 137840987 GACAATTGAAATTAAAAACCATCctcacctgccattcattcttgctcccctgcaatctgt-ctctgtccagcagtagagttatcatg-----------ctgcaaccctc----ctctgcagggaccctttggcttcctattgcttttagagaaaag-----gcatgctctagcatcagccacctccccaggtttacgtcttgcattttccattctaatcacactgagcaatcagttcctgggacacactctgctctctcctaccttagattattgcattccctgttgcctctgcctacactcttcttatttagatctcagcttaaacatcacttcctcagagaatccttctctgaccccactttccacttctatccagcatggccaggttagggttccct-ggcatcctatgcttcccctccatcatCTTGGAGacagcataacatagtgactaggagaacagacacagcaatctctctagttttaaaccccaagtctgccacttactagctttgcaatc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64844462 498 + 135191526 GACAATTGAAATTAAAAACCATCctcacctgccattcattcttgctcccctgcaatctgt-ctctgtccagcagtagagttatcatg-----------ctgcaaccctc----ctctgcagggaccttttggcttcctattgcttttagagaaaag-----gcatgctctagcatcagccacctcaccaggtttacgtcttgcattttccattctaatcacactgagcaatcagttcctgggacacattctgctctctcctaccttagattattgcattccctgttgcctctgcctacactcttcgtatttagatctcagcttaaacctcacttcctcagagaatccttctctgaccccactctccacttctatccagcatggccaggttagggttccct-ggcatcctgtgcttcccctccatcatCTTGGAGacagcataacatagtgattaggagaacagacacagcaatctctctagttttaaaccccaagtctgccacttactagctttgcaatc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57884251 497 - 122973662 GACAGTTG-AATTAAAAACCATCCTCACCTGCCATTCATTCTTGCTCCCCTGCAATCTGT-CTCTGTCCAGCAGTAGAGTTACCATG-----------CTGCAACCCTC----CTCTGCAGGGACCCTTTGGCTTCCTATTGCTTTTAGAGAAAAG-----GCATGctctagcatcagccacctccccaggtttacgtcttgcattttccattctaatcacactgagcaatccgttcctgggacacactctgctctctcctaccttagattattgcattccctgttgcctctgcctacattcttcttatttagatctcagcttaaacctcacttcctcagagaatccttctctgaccccccTCTCCACTTCTATCCAGCATGGCCAGGTTAGGGTTCCCT-GGCATCCTATGCTTCCCCTCCATCATCTTGGAGacagcataacttagtgattaggagaacagacacagcagtctctctagttttaaaccccaagtctgccacttactagctttgcaatc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79814031 498 + 112192347 GACAATTGAAATTAAAAACCATCCCCACCTGCCATTCATTCTTGCTCCCCTGCAATCTGT-CTCTGTCCAGCAGTAGAGTTATCAAG-----------CTGCAACCCTC----CCCTGCAGGGACCCTTTGGCTTCCTTTTGCTCTTAGAGAAAAG-----GCATGctctagcatcagccacctccccaggtttacgtcttgcattttccattgtaatcacactgagcaatcagttcctgggacacactctgctctctcctaccttatattattgcattccctgttgcctctgcctacacgcttcttatttagatctcagcttaaacctcacttcctcaaagaatccttctttgaccccACTCTCCGCGCCTATACAGCATGGCGAGGTTAGGGTTCCCT-GGCATCCTATGCTTCCCTTCCATCATCTTGGAGacagcgtaacatagtgattaggagaatagacacagcaatctctcttgttttaaaccccaagtctgccacttgctagctttgcaatc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80893960 498 + 112612857 GACAATTGAAATTAAAAACCATCCCCACCTGCCATTCATTCTTGCTCCCCTGCAATCTGT-CTCTGTCCAGCAGTAGAGTTATCAAG-----------CTGCAACCCTC----CCCTGCAAGGACCCTTTGGCTTCCTTTTGCTCTTAGAGAAAAG-----GCATGCTCTAGCATCAGCcacctccccaggtttacgtcttgcattttccattgtaatcacactgagcaatcagttcctgggacacactctgctctctcctaccttatattattgcattccctgttgcctctgcctacacgcttcttatttagatctcagcttaaacctcacttcctcaaagaatccttctttgaccccACTCTCCGCGCCTATACAGCATGGCGAGGTTAGGGTTCCCT-GGCATCCTATGCTTCCCTTCCATCATCTTGGAGacagcgtaacatagtgattaggagaatagacacagcaatctctcttgttttaaaccccaagtctgccacttgctagctttgcaatc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76943466 498 + 107442819 GacaattgaaattaaaaaccatTCCCACCTGCCATTCATTCTTGCTCCCCTGCAATCTGT-CTCTGTCCAGCAGTAGAGTTATCAAG-----------CTGCAACCCTC----CCCTGCAGGGACCCTTTGGCTTCCTTTTGCTCTTAGAGAAAAG-----GCATGCTCTAGCATCAGCCACCTCCCCAGGTTTACGTCTTGCATTTTCCATTGTAATCACACTGAGCAATCAGTTCCTGGGACACACTCTGCTCTCTCCTACCTTATATTATTGCATTCCCTGTTGCCTCTGCCTACATTCTTCTTATTTAGATCTCAGCTTAAACCTCACTTCCTCAAAGAATCCTTCTTTGACCCCACTCTCCGCGCCTATACAGCATGGCGAGGTTAGGGTTCCCT-GGCATCCTATGCTTCCCTTCCATCATCGTGGAGACAGCATAACATAGTGATTAGGAGAATAGACACAGCAATCTCTCTAGTTTTAAACCCCAAGTCTGCCACTTGCTAGCTTTGCAATC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81207945 497 + 108555830 GACAATTGAAATTAAAAACCATCCTCACCTGCCATTCATTCTTGCTCCCCTGCAATCTGT-CTCTGTCCAGCAGTAGAGTTATCAAG-----------CTGCAACCCTC----CCCTGCAGGGACCCTTTGGCTTCCTTTTGCTCTTAGAGAAAAG-----GCATGCTCTAGCATCAGCCACCTCCCCAGGTTTACGTCTTGCATTTTCCATTGTAATCACACTGAGCAAtcagttcct-ggacacactctgctctctcctaccttatattattgcattccccgttgcctctgcctacatgcttcttatttagatctcagcttaaacctcacttcctcagagaatccttctttgaccccACTCTCCGTGCCTATACAGCATGGAGAGGTTAGGGTTCCCT-GGCATCCTATGCTTCCCTTCCATCATCGTGGAGacagcataacacagtgattaggagaatagacacagcaatctctctagttttaaaccccaagtctgccacttgctagctttgcaatc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111442442 488 - 210400635 GAGAATTGGAATTAAAAACCATCCTCACCTGCCATTCATTCTTGCTCCCCTACAATCTGT-CTCTCTCCAGAAGTAGAGTTATCATG-----------CTGCAACCCTC----CCCTGCAGGGACCCTTTGACTTCCTGTTGCTCTTAGGGAAAAG-----GCATGCTCTGGTATCAGCCACCTCTCCAGGTTCACCTCTTGTGTTTTCCTTTCTAATCACACCGAGCAATCAGTTCCTGGGGCACACTCTGCTCTCTCCTACCTTAGATTATTGCATGCCCTGTTGCCTCTGCCTACATTCTTCTTATTTAGATCTCAACTTAAACTTCA-TTCCTTACAAAATCCTTCTCTGACCCCACTCTCCACACCTGTCC---------AGGTTAGGGTCCCTG-AGCATCCTATGCTTCCCCTCCATCATCCTGGAGacaacataacatagtgattaggagaatggacacagcagtctctctagttttagatcccaattctgccacttactagctttgcaatc i calJac3.chr1 I 730 C 0 s canFam3.chr1 35327123 503 - 122678785 GAAAATTGAAATTATATTCTCACCTTACCTGCAGGCCACTCTTGTCCTGCTCCCATCTGTGCTCTGCCTGGCAGTAGAGTTTTTATGAGCAAAATGCCCTCCAAACCTCCCCACCCCGGAGTAACCTTTTGGCTTCCTGTTGCTTTTAGCGAAGAGACTCCGTGTGCTCTGACACCAACCCCATCCCCAGCTTCACCTCCTGCTCTCTCCATTCTAACCACACTGCGAGTTCAGTTCCAGGAACTCCCAC--CTCTCTCCTACCTTGGATAGTTATACACCCTGTGTCCTCTGCCTAGGCTCTTCTTAAATCAATCATGGCTTAAACCTCACTTCCACAGAGAGTGCTTCTCTGACCCTGCTCCCCA---------------GAATAGTTAGGGCTCCCTGGGCATCCTAAGCCTCTTGTTCATCATCTTGGAGacagtataacacactgattaggagcaaagacacaggagtctctctggtttcaaatcctaatcccacctattatgggctttgcaatc i canFam3.chr1 C 0 I 925 e mm10.chr19 38083038 704 - 61431566 I a score=850921.000000 s hg38.chr9_GL383541v1_alt 124339 290 + 171286 agagtcagttttcttaatttctctc---ttaattttccatctgGGACCAAAAAcctagcaatatacttggcactcagttgatgctcaataattgtctgttgactgattgCCACATTCTGACTTTTGAGcaggggttattcacccttattaaaatcacctagggagggccaggcatggtggctcacaactgtaatcccagcactttgggaggccaagacaggcatatcatctgaggtcaggagttggagaccagcctagccaacatggtaaaagcccgtctctacttaaaaata s panTro4.chr9 68689755 290 + 137840987 agagtcagttttcttaatttctctc---ttaattttccatctgGGACCAAAAAcctagcaatatacttggcactcagttgatgctcaataattgtctgttgactgattgCCACATTCTGACTTTTGAGCAGGGGTTATTCACCCTTATTAAAATCACCTAGGGAGggccaggcatggtggctcacaactgtaatcccagcactttgggaggccgagacaggcatatcatctgaggtcaggagttggagaccagcctagccaacatggtaaaagcccgtctctacttaaaaata i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64844960 290 + 135191526 agagtcagttttcttaatttctctc---ttaattttccatctgGGACCAAAAAcctagcaatgtacttggcactcagttgatgctcaataattgtctgttgactgattgTCACATTCTGACTTTTCAGcaggggttattcaccctcattaaaatcacatagggagggccaggcatggtggctcacacctgtaatcccagcactttgggaggccgagacaggcagatcatctgaggtcaggagttggagaccagcctagccaacatggtaaaagcccatctctacttaaaaata i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57884748 288 - 122973662 --agtcagttttcttaatttctctc---ttaattttccatctgGGACCAAAAAcctagcaatgtacttggcactcagttgatgctcaataattgtctgttgactgattgTCACATTCTGACTTTTGAGCAGGGGTTATTCACCCTCATTAAAATCACCTAGGGAGggccagccatggtggctcacacctgtaatcccagcactttgggaagccaagacaggcagatcatctgaggtcaggagttggagaccagcctagccaacatggtaaaagcccatctctacttaaaaata i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79814529 288 + 112192347 agagtcagttttcttaatttatctc-----aattttccatctgGGACCAAAAAcctagcaatgtacttggcactcagttggtgctcactaattgtctgttgactgattgTCACATTCTGACTTTTGAGCAGGGATTATTTGCCTTcattaaaatcacctggggagggccaggtatggtggcttacacctgtaatcccagcactttgggaggcagagacaggtggattacctgaggtcaggagttggagaccagcgtagccaacatgataaaaccccatctctacttaaaaata i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80894458 288 + 112612857 agagtcagttttcttaatttctctc-----aattttccatctgGGACCAAAAAcctagcaatgtacttggcactcagttggtgctcactaattgtctgttgactgattgTCACATTCTGACTTTTGAGCAGGGATTATTTGCCTTcattaaaatcacctggggagggccaggtatggtggcttacacctgtaatcccagcactttgggaggcagagacaggtggattacctgaggtcaggagttggagaccagcgtagccaacatgataaaaccccatctctacttaaaaata i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76943964 288 + 107442819 AGAgtcagttttcttaatttctctc-----aATTTTCCATCTGGGACCAAAAACCTAGCAATGTACTTGGCACTCAGTTGGTGCTCACTAATTGTCTGTTGACTGATTGTCACATTCTGACTTTTGAGCAGGGATTATTCACCttcattaaaatcacctggggagggccaggtatggtagctcacacctgtaatcccagcactttcggaggcagagacaggtggattacctgaggtcaggagttggagaccagcgtagccaacatgataaaaccccatctctacttaaaaata i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81208442 286 + 108555830 --agtcagttttcttaatttctctc-----aattttccatctgGGACCAAAAAcctagcaatgtagttggcactcagttggtgctcactaattgtctgttgactgattgTCACATTCTGACTTTTGAGCAGGGATTATTCACCTTcattaaaatcacctggggagggccaggtatggtggctcacacctgtaatcccagcactttcagaggcagagacaggtggattacctgaggtcaggagttggagaccagcatagccaacatgataaaaccccatctctacttaaaaata i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111442930 289 - 210400635 agagtcagttttcttaatttctctcttttttattttccATGTGGGATCGAAAACCTAGTAGCAATCTTGGCAC----TTGGTGCTGAATAATTGTCTATGGACTGATTGTCACATTCTGACTTTTGAGCAGGGGTTATTTACCCTcattaaaatcacctggagagggctaggcatggtggctcacatctgtaatcccagcaggttgggagaccaaggcaggtggatcacctgaggttaggagttggagaccagccacaccaatatggtgaaaccctgtctctacttaaaaata i calJac3.chr1 C 0 C 0 e mm10.chr19 38083038 704 - 61431566 I e canFam3.chr1 35327626 925 - 122678785 I a score=16982.000000 s hg38.chr9_GL383541v1_alt 124629 7 + 171286 ttttaaa s panTro4.chr9 68690045 7 + 137840987 ttttaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64845250 7 + 135191526 ttttaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57885036 7 - 122973662 tttcaaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79814817 7 + 112192347 ttttaaa i rheMac3.chr15 C 0 I 9 s macFas5.chr15 80894746 7 + 112612857 ttttaaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76944252 7 + 107442819 ttttaaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81208728 7 + 108555830 ttttaaa i chlSab2.chr12 C 0 I 1 e mm10.chr19 38083038 704 - 61431566 I e canFam3.chr1 35327626 925 - 122678785 I e calJac3.chr1 111443219 0 - 210400635 C a score=205.000000 s hg38.chr9_GL383541v1_alt 124636 1 + 171286 g s panTro4.chr9 68690052 1 + 137840987 a i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64845257 1 + 135191526 g i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57885043 1 - 122973662 g i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80894753 1 + 112612857 a i macFas5.chr15 C 0 C 0 e mm10.chr19 38083038 704 - 61431566 I e chlSab2.chr12 81208735 1 + 108555830 I e canFam3.chr1 35327626 925 - 122678785 I e rheMac3.chr15 79814824 9 + 112192347 I e calJac3.chr1 111443219 0 - 210400635 C e papAnu2.chr15 76944259 0 + 107442819 C a score=154391.000000 s hg38.chr9_GL383541v1_alt 124637 303 + 171286 gccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtgtctactaaaaatacaaaaaattagccgggcgtggtggcaagcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgcgccaccgcactccagcctgggcaacagagcaagactctgtctc-------aaaaaaaaaaaaaaatttttttt s panTro4.chr9 68690053 302 + 137840987 gccaggcgcggtggctcacgcttgtaatcccagcactttgggaggccgaggcgggcggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcaggcacctgtagtcccagctactcaggaggctgagtcaggagaatggcgtgaacccgggaggtggatcttgcagtgagtcgagattgcgccactgcactccagcctaggcaacagagcaagactccatctc--------aaaaaaaaaaaaaatttttttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64845258 310 + 135191526 gccaggcgcggtggcttacgcctgtaatcccagcactttgggaggccgaggtgggtggatcatgaagtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaaaatacaaaaaattagccaggcatggtggcaggcacctgtagtcccagctactcgggaggctgagtcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgcaccactgcactccagcctgggcaacagagcaagactctgtctcaaaaaaaaaaaaaaaaaaaaaaattttttt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57885044 299 - 122973662 gccaggcgcagtggctcacacctgtaatcccagcactttgggaggccgaggtgggcagatcatgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggcaggcacatgtagtcccagctactcgggaggctgagtcaggagaatggcgtgaacccggaaggcagagcttgcagtgagctgagatcgcaccactgcactccagcctgggcaacagagcaagactccatctc--------aaaaaaaaaaaaa---tttttt i nomLeu3.chr1a C 0 C 0 e mm10.chr19 38083038 704 - 61431566 I e chlSab2.chr12 81208735 1 + 108555830 I e canFam3.chr1 35327626 925 - 122678785 I e rheMac3.chr15 79814824 9 + 112192347 I e calJac3.chr1 111443219 0 - 210400635 C e papAnu2.chr15 76944259 0 + 107442819 C e macFas5.chr15 80894754 0 + 112612857 C a score=2518.000000 s hg38.chr9_GL383541v1_alt 124940 7 + 171286 ttttttt s panTro4.chr9 68690355 7 + 137840987 ttttttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64845568 7 + 135191526 ttttttt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57885343 7 - 122973662 tttaaaa i nomLeu3.chr1a C 0 C 0 s calJac3.chr1 111443219 7 - 210400635 tttttta i calJac3.chr1 C 0 C 0 e mm10.chr19 38083038 704 - 61431566 I e chlSab2.chr12 81208735 1 + 108555830 I e canFam3.chr1 35327626 925 - 122678785 I e rheMac3.chr15 79814824 9 + 112192347 I e papAnu2.chr15 76944259 0 + 107442819 C e macFas5.chr15 80894754 0 + 112612857 C a score=295.000000 s hg38.chr9_GL383541v1_alt 124947 1 + 171286 t s panTro4.chr9 68690362 1 + 137840987 a i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64845575 1 + 135191526 a i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57885350 1 - 122973662 a i nomLeu3.chr1a C 0 C 0 s papAnu2.chr15 76944259 1 + 107442819 a i papAnu2.chr15 C 0 C 0 s calJac3.chr1 111443226 1 - 210400635 a i calJac3.chr1 C 0 C 0 e mm10.chr19 38083038 704 - 61431566 I e chlSab2.chr12 81208735 1 + 108555830 I e canFam3.chr1 35327626 925 - 122678785 I e rheMac3.chr15 79814824 9 + 112192347 I e macFas5.chr15 80894754 0 + 112612857 C a score=16080.000000 s hg38.chr9_GL383541v1_alt 124948 8 + 171286 attagcca s panTro4.chr9 68690363 8 + 137840987 attagcca i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64845576 8 + 135191526 attaaccg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57885351 8 - 122973662 attagccg i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80894754 8 + 112612857 attaactg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76944260 8 + 107442819 attaaccg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81208736 8 + 108555830 attaaccg i chlSab2.chr12 I 1 C 0 s calJac3.chr1 111443227 8 - 210400635 attagctg i calJac3.chr1 C 0 C 0 e mm10.chr19 38083038 704 - 61431566 I e canFam3.chr1 35327626 925 - 122678785 I e rheMac3.chr15 79814824 9 + 112192347 I a score=438707.000000 s hg38.chr9_GL383541v1_alt 124956 153 + 171286 ggcatggtggtgcaagcctatagtcccagctactctggaggctgaggcaggagaattgcttgaacccaggaggtggatggaggtttcagtgagccaagatttgcactccagcctgggtgacagagcaagacc-ccatctc-aaaaaaaaaaaaaa s panTro4.chr9 68690371 154 + 137840987 ggcatggtggtgcaagcctatagtcccagctactctggaggctgaggcaggagaattgcttgaacccaggaggtggatggaggtttcagtgagccaagatttgcactccagcctgggtgacagagcaagacc-ccatctcaaaaaaaaaaaaaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64845584 153 + 135191526 ggcatggtggtgcaaccctatagttccagctactcgggagactgaggcaggagaattgcttgaacccaggaggtggatggaggtttcagtgagccaagatttgcactccagcctgggtgacagagcgagacc-ccatctc-aaaaaaaaaaaaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57885359 153 - 122973662 ggcatggtggtgcaagcctgtagtcccagctactcgggaggctgaggcaggagaattgcccgaacccaggaggtgtatggaggtttcagtgagccaagatttgcactccagcctgggtgacagagcgagacc-tcatctc-aaaaaaaaaaaaaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79814833 153 + 112192347 ggcatggtggtgcatgcctgtagtcccagctactcgggaggcggaggcaggaggattgtttgagcccaggaggtagacagaggtttcagtgagccaagatttgtactccagcctgggtgacagagcgagact-ccatcta-aaaaaaaaaaaaaa i rheMac3.chr15 I 9 I 24 s macFas5.chr15 80894762 147 + 112612857 ggcatggtggtgcatgcctgtagtcccagctactcgggaggcggaggcaggaggattgcttgagcccaggaggtagacagaggtttcagtgagccaagatttgtactccagcctgggtgacagagcgagactcccatcta-aaaaaaa------- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76944268 153 + 107442819 ggcatggtggtgcatgcgtgtagtcccagctactcgggaggcggaggcaggagaattgcttgagcccaggaggtggacagaggtttcagtgagccaagatttgtactccagcctgggtgacagagcgagact-ccatctc-aacaaaaaaaaaaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81208744 153 + 108555830 ggcatggtggtgcatgcctgtagtcccagctgcttgggaggcggaggcaggaaaattgcttgagcccaggaggtggacagaggtttcagtaagccaagatttgtactccagcctgggtgacagagcgagact-ccatctc-aaaaaaaaaaaaaa i chlSab2.chr12 C 0 I 5 s calJac3.chr1 111443235 149 - 210400635 ggcatggtggcatgtgcctgtagtccaagctacttgggaggctgaggcaagagaattgcttgaacccaggaggtg----gaggtttcagtgagctgagatttgcactctagcctgggtgacagagcaagacc-caatcta-aaaaaaaaaaaaaa i calJac3.chr1 C 0 C 0 e mm10.chr19 38083038 704 - 61431566 I e canFam3.chr1 35327626 925 - 122678785 I a score=6538.000000 s hg38.chr9_GL383541v1_alt 125109 15 + 171286 -------aaagaaattataaag---- s panTro4.chr9 68690525 11 + 137840987 -------aaagaaatcac-------- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64845737 8 + 135191526 -------aaag---tcac-------- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57885512 10 - 122973662 -------aaaa-aatcat-------- i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80894909 11 + 112612857 -------aaaaaaatcac-------- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76944421 11 + 107442819 -------aaaaaaatcac-------- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81208902 11 + 108555830 -------aaaaaaatcac-------- i chlSab2.chr12 I 5 C 0 s calJac3.chr1 111443384 22 - 210400635 aaaaagaaaagaaatcat----ccag i calJac3.chr1 C 0 C 0 e mm10.chr19 38083038 704 - 61431566 I e canFam3.chr1 35327626 925 - 122678785 I e rheMac3.chr15 79814986 24 + 112192347 I a score=1832012.000000 s hg38.chr9_GL383541v1_alt 125124 614 + 171286 ctgtggagctttataatgctgatgtccaagtgtt-acctcaaaccaGggaaagcagaccctgagatggagacttacttgcaggaagtttatgagggt-tgctcttgggatcaccactgaaggaaaggaaggaaaggaagcag--------gatcaggcaggggaagctgtcgggctgcagtgcattctcaaggaaggcctcagctgacctacagggagctctgaaactggtgtggcctttcagagttgtcctgtttcagagcaatgttgtctttatagtcccatattgattggtcattggatgctggctacctcaggaagagggtattgccttgaaatgccgagcaactttccacagattattaacaagccgagtgctgtccactggctacactttcagcaactgggagaataagcccttcattcctgaaggatcagttgggcggt--------gcatcTACTATactgattaggtcagaatcttttggtgtgg--------------ggcctgggaatcagtattttataaagtgcaccagggtattgtaacatccaacatagagaactattgCTCTGAA----TAACCACA----------------------------------------------------------ATAAAAGCAAAAAAGAAGAGAGCAATAAGAAAGGCCGTGTATTTCAGGCTCATATGC s panTro4.chr9 68690536 601 + 137840987 ctatggagctttataatgctgatgtccaagtgtt-acctcaaaccaaggaaagcagaccctgagatggagacttacttgcaggaagttta--------------tgggatcaccactgaaggaaaggaaggaaaggaagcag--------gatcaggcaggggaagctgtcgggctgcagtgcattctcaaggaaggcctcagctgacctacagggagctctgaaactggtgtggcctttcagagttgtcctgtttcagagcaatgttgtctttatagtcccatattgattggtcattggatgctggctacctcaggaagagggtattgccttgaaatgccgagcaactttccacagattattaacaagccgagtgctgtccactggctacactttcagcaactgggagactaagcccttcattcctgaaggatcagttgggcggt--------gcatcTACTATactgattaggtcagaatcttttggtgtgg--------------ggcctgggaatcagtattttataaagtgcaccagggtattgtagcatccaacatagagaactattgCTCTGAA----TAACCACA----------------------------------------------------------ATAAAAGCAAAAAAGAAGAGAGCAATAAGAAAGACCGTGTGTTTCAGGCTCATATGC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64845745 613 + 135191526 ctgtggagctttataatgctgatgtccaagtgtt-acctcaaaccaaggaaagcagaccctgagatggagacttacttgcagcaagtttatgagggt-tgctcttgggatcaccactgaaggaagggaaggaaaggaagcag--------gatcaggcaggggaagctgtcgggctgcagtgcattctcaaggaaggcctcagctgacctacagggagttctgaaactggtgtggcctttcagagttgtcctgtttcagagcaatgttgtctttatagtcccatattgattggtcattggatgctggctacctcaggaagagggtattgccttgaaatgccaagcaactttccacagattattaacaagccgagtgctgtccactggctacactttcagcaactgggagaataagcccttcattcctgaaggatcagttgggcagt--------gcatcTACTACactgattaggtcagaatcttttggtgtgg--------------ggcctgggaatcagtattttataaagtgcaccagggtactgtagcatccaacatagagaactattgCTCTGAA----TAACCACA----------------------------------------------------------ATAAAAGC-AAAAAGAAGAGAGCAATAAGAAAGACCGTGTGTTTCAGGCTCATATGC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57885522 614 - 122973662 ctgtggagctttataatgctgatgtccaagtgtt-acctcaaaccaaggaaagcagaccctgagatggagacttacttgcaggaattttatgagtgt-tgctcttgggatcaccacagaaggaagggaaggaaaggaagcag--------gatcaggcaggggaagctgtcgggctgcagtgcattctcaaggaaggcctcagctgacctacagggagctctgaaactggtgtggcctttcagagttgtcctgtttcagagcaatgttgtctttatagtcccatattgattggtcattggatgctggctacctcaggaagagggtattgccttgaaatgccgagcaactttccacaggtgattaacaagccgagtgctgtccactggctacactttcagcaactgggagaataagcccttcattcctgaaggatcagttgggtggt--------gcatcGACTATactgattaggtcagaatcttttggtatgg--------------ggcctgggaatcagtattttataaagtgcaccagggtattgtaacatccaacatagagaactattgCTCTGAA----TAACCACA----------------------------------------------------------ATAAACGCAAAAAAGAAGAGAGCAGTAAGAAAGACCGTGTGTTTCAGGCTCATATGC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79815010 676 + 112192347 ctctggacctttataatgctgatgtccaagtatt-accccaaaccaaggaaagcagaccctgagatggagacttatttgcaggaagcttatgaggtt-tgctcttgggatcaccactgaaggaagggaaggaaaggaagcaggatcaggcgatcaggcaggagaagctgtcaggctgcagtgcgttctcaaggaaggcttcagctgacctacagggagctctgaaactggtgtggcctttcagagtcgtcctgggtt-gagcaatgttgtctttacagtcccatattgattggtcatcggatgctggctacctcaggaagagggtattgccttgaaatgcccggcaa-tttccacag--gactaacaagtcgagtgctgtccactggctacactttcagcaactgggagaataagcccttcattcctgaaggatcagttgggtggt--------gcatcTACTATactgattaggtcagaatctcttggtgtgg--------------ggcctgggaatcagtattttataaagtgcaccagggtattgtaacatccaacatagagaactattgCTCTGAA----TAACTACAAAAGttattttataaaagtataatattttataaaaatatagtattttaCTAAAGTAGTATAAAAGCAGAAAAGAAGAGAGCAATAAGAAAGACCATGTGTTTCAGGCTTATATGC i rheMac3.chr15 I 24 C 0 s macFas5.chr15 80894920 677 + 112612857 ctctggacctttataatgctgatgtccaagtatt-accccaaaccaaggaaagcagaccctgagatggagacttatttgcaggaagcttatgaggtt-tgctcttgggatcaccactgaaggaagggaaggaaaggaagcaggatcaggcgatcaggcaggagaagctgtcaggctgcagtgcgttctcaaggaaggcttcagctgacctacagggagctctgaaactggtgtggcctttcagagttgtcctgggtt-gagcaatgttgtctttacagtcccatattgattggtcatcggatgctggctacctcaggaagagggtattgccttgaaatgcccggcaactttccacag--gactaacaagtcgagtgctgtccactggctacactttcagcaactgggagaataagcccttcattcctgaaggatcagttgggtggt--------gcatcTACTATactgattaggtcagaatctcttggtgtgg--------------ggcctgggaatcagtattttataaagtgcaccagggtattgtaacatccaacatagagaactattgCTCTGAA----TAACTACAAAAGTTATTTTATAAAAGTATAATATTTTATAAAAATATAGTATTTTACTAAAGTAGTATAAAAGCAGAAAAGAAGAGCGCAATAAGAAAGACCATGTGTTTCAGGCTCATATGC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76944432 621 + 107442819 ctctggAGCTTTATAATGCTGATGTCCAAGTATT-ACCCCAAACCAAGGAAAGCAGACCCTGAGATGGAGACTTATTTGCAGGAAGTTTATGAGGTT-TGCTCTTGGGATCACCactgaaggaagggaaggaaaggaagcaggATCAGGCGATCAGGCAGGAGAAGCTGTCAGGCTGCAGTGCGTTCTCAAGGAAGGCTTCAGCTGACCTACAGGGAGCTCTGAAACTGGTATGGCCTTTCAGAGTTGTCCTGGGTT-GAGCAATGTTGTCTTTACAGTCCCATATTGATTGGTCATTGGATGCTGGCTACCTCAGGAAGAGGGTATTGCCTTGAAATGCCCGGCAACTTTCCACAGATGACTAACAAGTCGAGTGCTGTCCACTGGCTACACTTTCAGCAACTGGGAGAATAAgcccttcattcctgaaggatcaGTTGGGTGGT--------GCATCTACTATACTGATTAGGTCAGAATCTTTTGGTGTGG--------------GGCCTGGGAATCAGTATTTTATAAAGTGCACCAGGGTATTGTAACATCCAACATAGAGAACTATTGCTCTGAA----TAACTaca----------------------------------------------------------ataaaagcagaaaagaggAGAGCAATAAGAAAGACCGTGTGTTTCAGGCTCATATGC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81208913 621 + 108555830 ctctggagctttataatgctgatgtccaagtatt-accccaaaccaaggaaagcagaccctgagatggagacttatttgcaggaagtttatgaggtt-tgctcttgggatcaccactgaaggaagggaaggaaaggaagcaggatcaggcgatcaggcaggagaagctgtcaggctgcagtgtgttctcaaggaaggcttcagctgacctacagggagctctgaaactggtatggcctttcagagttgtcctgggtt-gagcaatgttgtctttacagtcccatattgattggtcattggatgctggctacctcaggaagagggtattgccttgaaatgcccggcaactttccacagatgactaacaagtcgagtgctgtccactggctacactttcagcaactgggagaataagcccttcattcctgaaggatcagttgggtggt--------gcatcTACTATactgattaggtcagaatcttttggtgtgg--------------ggcctgggaatcagtattttataaagtgcaccagggtattgtaacatccaacatagagaactattgCTCTGAA----TAACTACA----------------------------------------------------------ATAAAAGCAGAAAAGAAGAGAGCAATAAGAAAGACCGTGCGTTTCAGGCTCATGTGC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111443406 636 - 210400635 ----ggagctttataatgctgatgtccaggtgttaaccccagaccaaagaaagcagaccctgagatggagccttacttgcaggaagtttatgagggtgtgctcttgggatcaccactgaaggaagggaagggaaggaagcag--------gatcaggcagaggaagctgttggacggcagtgcattcccaaggaaggcctcagctgacctacagggagctctgaaactggcatggcctttcagagctgtcctgggtt-gatcagtattgtctttatagtcctgtattgattggtcattggatgctggctaccttaggaagagggtattgccttgaaatgccaacgcactttccatggacaactaacaagccgagagctgtccactggctacattttcagcaactgagagaataagcttttcattcctgaaggatcagttgagtggcacattacagtatctacTGTACTGATTAGGTCAGATTCTCTTGGTTTGGGAAAAAATTCTCTTggcatgggaatcaggattttatgaagtgcaccaaagtattgtaacgtgcaacatagagaactattgCTCTGAATAACTAACCACA----------------------------------------------------------ATAAAAGC-AAAAAGAAGAGAACAATAAGAAAGACCATGTGTTTCAGGCTCATATGC i calJac3.chr1 C 0 C 0 e mm10.chr19 38083038 704 - 61431566 I e canFam3.chr1 35327626 925 - 122678785 I a score=4478381.000000 s hg38.chr9_GL383541v1_alt 125738 1484 + 171286 AGCTGAGCTGCACTGAAACCAGGCATGGTAGCCCAGCAGATTTTGTGGTAGCCAAAGGCCTGTGCAAGGATATGTCTGTGTAGTGCCCCTGCCCAGGTCCCCCACCCTGAAGTGCTGGGAGACGTTCCTGTGACCATACAGCTGGGCAGCAACAGAGTTAGATGAATGGTCTTCCTGCCCCTAGGTAGCTTTTTCACTGTGAGTGACTCAGAAAGCTGGAGTCAGATCAGTAGTCCTCATGTGTACCCTGTAAGCCAGGAA-CCCCTGTCAAGGCTTCAGAGATCAAGAGTTTTCCAGAGCTATGACACCCAAACCTACGCTACTGTTTTCCACATGTGGTTTCTGTCCACAGAGAGTACATGTTTCTCC-AAAATTCTTGCCATTGAG-AAAGGAGTTTTAAGTCACAGAGCACCC-AAATAAGCATACGGCCAACACTTGTCAGGTGTCACAGTCTGTCTGGAAGCTTCATATTGGCTGTTGTGGGTGGTTTAATAACTCAGTATTGACTTTA----CTTCCAAACTGATGACAGTTTAACAGA-TTTTTCTGAGCCTATTGAG-------CTTAGCATACATTTTG-TATTAGTTGGAATTTCTAATGACTGAG-TCCTGAAATGAACTTGCTGGAACTTCTAGAAGGTTCAGAGTTCAACCTGGGTCAGAACAAGGCACAagctggctgtttatcaagtacctac-tttgtgctgggcagcacatgctctcttgttcagtccttaatacgctacagtaaca----ccaaatttaggtgaagaaactgaagtttcaggaaatttaaa--tagtttgattcttcctgtttccttgccacttttccctaaattccagacgaaacccttcagtgacacccctaaaattcatctcaaacatgtctact--tctctctctccagccaccaccctagtctaagccaccatcatttcttacttaaatgacttcaat---atcttcgtagctggatcttctcttccatcttactctctctatactcc----agagagagacagagagacgcagcagccagaatcatttctttgaaacaggaatcaaatcttgga-cctcccctgcgtgaaactg-ttctatggccttcagaataaagcttcatcccatactgtggtttttgaggtcctgcacagttggatcactgcccactttgctggcttcatctgccttcattctgccacattcatagagtcccacagtccacatagttacgtgggccttctctctgttccttgagtcccaaggc----ctttcctag--------cccagggccagtgctctgcacagggggtgcctcctgccctagccattcccatatcaagctggctcccatgcttttgtcccaggtcaagtgcttcctctcagaaaggaacattcctgactgccgcccagtttataaccactttcctcatacccagattactccccattagtttgcccagtttattttgtgtataac----atccaaatctgaaatgatctcatttgtttatttg s panTro4.chr9 68691137 1485 + 137840987 AGCTGAGCTGCACCGAAACCAGGCATGGTAGCCCAGCAGATTTTGTGGTAGCCAAAGGCCTGTGCAAGGATATGTCTGTGTAGTGTCCCTGCCCAGGTCCCCCACCCTGAAGTGCTGGGAGATGTTCCTGTGACCATACAGCTGGGCAGCAACAGAGTTAGATGAATGGTCTTCCTGCCCCTAGGTAGCTTTTTCATTGTGAGTGACTCAGAAAGCTGGAGTCAGATCAGTAGTCCTCATGTGTACCCTGTAAG-CAGGAA-CCCCTGTCAAGGCTTCAGAGATCAAGAGTTTTCCAGAGCTATGACACCCAAACCTACGCTACTGTTTTCCACATGTGGTTTCTGTCCACAGAGAGTACACGTTTCTCC-AAAATTCTTGCCATTGAG-AAAGGAGTTTTAAGTCACAGAGCACCC-AAATAAGCATACGGCCAACACTTGTCAGGTGTCACAGTCTGTCTGGAAGCTTCATATTGGCTGTTGTGGGTGGTTTAATAACTCAGTATTGACTTTA----CTTCCAAACTGATGACAGTTTAACAGA-TTTTTCTGAGCCTATTGAG-------CTTAGCATACATTTTG-TATTAGTTGGAATTTCTAATGACTGAG-TCCTGAAATGAACTTGCTGGAACTTCTAGAAGGTTCAGAATTCAACCTGGGTCAGAACAAGGCACAAGCTGGCTGTTTATCAAGTACCTAC-TTTGTGCTGGGCAGCACATGCTCTC-TGTTCAGTCCTTAATACGCTACAGTAACA----CCAAATTTAGGTGAAGAAACTGAAGTTTCAGGAAATTTAAA--TAGTttgattcttcctgtttccttgccacttttccctaaattccagacgaaacccttcagtgacacccctaaaattcatctcaaacatgtctact--tctctctctccagccaccaccctagtctaagccaccatcatttcttacttaaatgacttcaat---atcttcgtagctggatcttctcttccatcttactctctctatactccagagagagagagagagagagacgcagcagccagaatcatttctttgaaacgggaatcaaatcttgga-cctcccctgcgtgaaactg-ttctatggccttcagaataaagcttcatcccatactgtggtttttgaggtcctgcacagttggatcactgcccactttgctggcttcatctgccttcattctgccacattcatagagtcccacagttcacatagtta-gtgggccttctctctgttccttgagtcccaaggc----ctttcctag--------cccagggccagtgctctgcacagggggtgcctcctgccctagccattcccatatcaagctggctcccatgcttttgtcccaggtcaagtgcttcctctcagaaaggaacattcctgactgccgcccagtttataaccactttcctcatacccagattactccccattagtttgcccagtttattttgtgtataac----atccaaatctgaaatgatctcatttgtttatttg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64846358 1479 + 135191526 AGCTGAGCTGCACTGAAACCAGGCATGGTAGCCCAGCAGATTTTGTCGTAGCCAAAAGCCTGTGCAAGGATATGTCTGTGTAGTGTCCCTGCCCAGGTCCCCCACCCTGAAGTGCTGGGAGATGTTCCTGTGACCATATGGCTGGGCAGGAACAGAGTTAGATGAATGGTCTTCCTGCCCCTAGGTAGCTTTTTCATTGTGAGTGACTCAGAAAGCTAGAGTCAGATCAGTAGTCCTCGCGTGTACCCTGTAAGCCAAGAA-CCCCTGTCAAAGCTTCAGAGATCAAGAGTTTTCCAGAGCTATGACACCCAAACCTACACTATTGTTTTCCACATGTGGTTTCTGTCCACAGAGAGTACATGTTTCTCCAAAAATTCTTGCCATTGAG-AAAGGAGTTTTAAGTCACAGAGCACCC-AAATAAGCATACGGCCAACATTTGTCAGGTGTCACAGTCTGTCTGGAAGCTTCATATTGGCTGTTGTGCGTGGTTTAATAACTCAGTATTGACTTTA----CTTCCAAACTGATGACAGTTTAAGAGA-TTTTTCTGAGCCTATCGAG-------CTTAGCGTACATTTTG-TATTAGTTGGAATTTCTAATGACTGAG-TCCTGAAATGAACTTGCTGGAACTTCTAGAAGGTTCAGAGTTCAACCTGGGTCAGAACAAGGCACAAGGTGGctgtttatcaagtacctac-tttgtgctgggcagcacatgctctctcgttcagtccttaatatgctacagtaaca----ccaaatttaggtgaagaaactgaagtttcaggaaatttaaa--tagtttgattcttcctgtttccttgccacttttccctaaattccagacgaaacccttcagtgacacccctaaaattaatctaaaacatttctact--tctctctcttcagccaccaccctagtctaagccaccatcatttcttacttaaatgacttcaat---atcttcgtagctggatcttctcttccaccttactctctctatactcc------agagagagagagagacgcagcagccagaatcatttctttgaaacgggaatcaaatcttgga-cctcccctgcgtgaaactg-ttctacggccttcagaataaagcttcatcccatactgtggtttttgaggtcctgcacagttggatcactgcccactttgctggcttcatctgccttcattctgccacattcagagagtcccacagtccacatagttacgtgggccttctctctgttccttgagtcccaaggc----ctttcctgg--------cccagggccagtgctctgcacagggggtgcctcctgccctagccattcccatatcaagctggctcccatgcttttgtcccaggtcaagtgcttcctctcagaaaggaacattcctgactgccgcccagtttataaccactttcctcatacccagattactccccattagtttgcccagtttcttttgtgtgtaacatttatcccaatttgaaatgatctc--------atttg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57886136 1478 - 122973662 AGCTGAGCTGCACTGAAACCAGGCATGGTAGCCCAGCAGATTTTGTGGTAGCCAAAGGCCTGTGCAAGGATATGTCTGTGTAGTGTCCCTGCCCAGGTCCCCCACCCTGAAGTGCTGGGAGATGTTCCTGTGACCATACAGCTGGACAGGAACAGAGTTAGATGAACCTTCTTCCTGCCCCTAGGTAGCCTTTTCATTGCGAGTAACTCAGAAAGCTAGAGTCAGATCAGCAGTCCTCGTGTGTACCCTGTAAGCCAGGAA-CCCCTGTCAAAGCTTCAGAGATCAAGAGTTTTCCAGAGCTATGACACCCAAACCTACGCTATTGTTTTCCACATGTGGTTTCTGTCCACAAAGAGTAC--GTTTCTCCAAAATTTCTTGCCATTGAG-AAAGGAGTTTTAAGTCACAGAGCACCC-AAATAAGCATACGGCCAACACTTGTCAGGTGTCACGGTCTGTCTGGAAGCTTCATATTGGCTGTTGTGGCTGGCTTAATAACTCAGTATTGACTTTA----CTTCCGAACTGATGACAGTTTAAGAGA-TTTTTCTGAGCCTATCGAG-------CTTAGCATACATTTTG-TATTAGTTGGAATTTCTAATGACTGAG-TCCTGAAATGAACTTGCTGGAACTTCTAGAAGGTTCAGAGTTCAACCTGGGTCAGAACAAGGCAGAAGCTGGCTGTTTATCAACTACCTAC-TTTGTGCTGGGCGGCACATGCTCTCTTGTTTAGTCCTTAATACGCTACAGTAACA----CCAAATTTAGGTGAAGAAACTGAAGTTTCAGGAAATTTAAA--TAGTttgattcttcctttttccttgccactcttccccaaattccagacaaaactcttcagtgacacccctaaaattcatatcaaacatgtcta-----ctctctctccagccaccaccctagtctaagccaccatcatttcttacttaaacgacttcaat---atcttcctagctggatgttctcttccacctt----tctctatactcc------agagagagagagagatgcagcagccagaatcatttctttgaaacggaaatcaaatcttggc-cctcccctgtgtgaaacag-ttctatggccttcagaataaagcttcatcccatactgtggtttttgaggtcctgcacagttggatcactgcccactttgctggcttcatctgccttcattctgccacaatcacagggtctcacagtccacatagttacgtgggccttttctctgttccttgagtcccaaggc----ctttcctgg--------cccagggccagtgctctgcacatggggtgcctcctgccctagccattcccatatcaagctggctcccatgcttctgtcccaggtcaagtgcttcctctcagaaaggaacattcctgactgccgcccagtttataaccgctttcctcatatccagattactccccattagtttgcccagtttattttgtgtataacatttatcccaatctgaaatgatctcatttgtttatttg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79815686 1432 + 112192347 AGCTGAGCTGCACTGAAACCAGGCATGGTAGCCCAGCAGATTCTGTGGTAGCCAAAGGCCTGTGCAAGGATATGTCTGTGTAGTGTCCCTGCCCAGGTCCCCCTCCCTGAAGTGCTGGGAGATGTTCCTGTGACCATACAGCTGGGTAGGAACAGAGTTAGATGAATGGTCTTCCTGCCCCTAGGTAGCTTTTTCACTGTCAGTGACTC---------------------------------------------------A-CCCCTGTCAAAGCTTCAGAGATCAAGAGTTTTCCAGAGTTATGACACCCAAACCTAGGCTATTGTTTTCCACATGTGGCTTCTGTCCACAGAGAGTACATGTTTCTCCAAAAATTCTTGCCATTGAG-AAAGGAGTTTTAAGTCACAGAGCATCC-AAATACGCATACGGCCAACACTTGCCAGCTGTTACAGTCTGTCTGGAAGCTTCATATTGGCTGTTCTGGATGGTTTAATAACTCAGTATCAACTTTA----CTTCCAAATTGATGACAGTTTAAGATA-TTTTTCTGAACCTATTGAG-------CTTAGCATACATTTTT-TAATAGTTGGAATTTCTAATGACTGAG-TCCTGAAATGAACTTGCTGGAACTTCTAGAAGGTTCAGAGTTCAACCTGGGTCAGAACAAGTGACAAGCTGGCCATTTATCAAGTACCTAC-TTTGTGCTGGGCAGCACATACTCTCTTGTTTAGTCCTTAATACGCTACAGTAACA----CCAAATTTAGGGGAAGAAACTGAAGTTTCAGGACATTTAAA--TAGTttgattcctcctgtttcattgccactcttccccaaattccagacgaaacccttcagtgacacccctaaaattcatctcaaacatgtccact--tctctctctccaggcaccaccctagtctaagctgccatcatttcttacttaaacgacttcaat---atctttgtagctggatcttctcttccaccttactctctctatacgcc----agagagagagagagagatgcagcagccagaatcatttctttgaaatggaaatcaaatcttggc-cctcccctgtgtgtaactg-ttctatggccttccgagtaaaacttcatcccatactgtggtttttgaggtcctgcacagttggatcactccccactttgctggcttcatctgctttcattctgccacaatc--agagtcccagagtccacatagtcacgtgggccttctctctgttccttgagtcccaaggc----ctttcctgg--------cccagggccagtgctctgcacagggggtgcctccttccccagccattcccatatcaagctggctcccacgcttctatcccaggtcaagtgcttcctctcagaaaggaacattcctgaccgccgcgcagtttataaccactttcttcacacccagattactcctcattagtttgcccagtttattttgtgtataacatttatcccaacctgaaattatctcattt----gtttg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80895597 1432 + 112612857 AGCTGAGCTGCACTGAAACCAGGCATGGTAGCCCAGCAGATTCTGTGGTAGCCAAAGGCCTGTGCAAGGATATGTCTGTGTAGTGTCCCTGCCCAGGTCCCCCTCCCTGAAGTGCTGGGAGATGTTCCTGTGACCATACAGCTGGGTAGGAACAGAGTTAGATGAATGGTCTTCCTGCCCCTAGGTAGCTTTTTCACTGTCAGTGACTC---------------------------------------------------A-CCCCTGTCAAAGCTTCAGAGATCAAGAGTTTTCCAGAGTTATGACACCCAAACCTAGGCTATTGTTTTCCACATGTGGTTTCTGTCCACAGAGAGTACATGTTTCTCCAAAAATTCTTGCCATTGAG-AAAGGAGTTTTAAGTCACAGAGCATCC-AAACACGCATACGGCCAACACTTGCCAGCTGTTACAGTCTGTCTGGAAGCTTCATATTGGCTGTTCTGGATGGTTTAATAACTCAGTATCAACTTTA----CTTCCAAATTGATGACAGTTTAAGATA-TTTTTCTGAACCTATTGAG-------CTTAGCATACATTTTT-TAATAGTTGGAATTTCTAATGACTGAG-TCCTGAAATGAACTTGCTGGAACTTCTAGAAGGTTCAGAGTTCAACCTGGGTCAGAACAAGTGACAAGCTGGCCATTTATCAAGTACCTAC-TTTGTGCTGGGCAGCACATACTCTCTTGTTTAGTCCTTAATACGCTACAGTAACA----CCAAATTTAGGGGAAGAAACTGAAGTTTCAGGACATTTAAA--TAGTttgattcctcctgtttcattgccactcttccccaaattccagacgaaacccttcagtgacacccctaaaattcatctcaaacatgtccact--tctctctctccaggcaccaccctagtctaagctgccatcatttcttacttaaacgacttcaat---atctttgtagctggatcttctcttccaccttactctctctatacgcc----agagagagagagagagatgcagcagccagaatcatttctttgaaatggaaatcaaatcttggc-cctcccctgtgtgtaactg-ttctatggccttccgagtaaaacttcatcccatactgtggtttttgaggtcctgcacagttggatcactccccactttgctggcttcatctgctttcattctgccacaatc--agagtcccagagtccacatagtcacgtgggccttctctctgttccttgagtcccaaggc----ctttcctgg--------cccagggccagtgctctgcacagggggtgcctccttccccagccattcccatatcaagctggctcccacgcttctatcccaggtcaagtgcttcctctcagaaaggaacattcctgaccgccgcgcagtttataaccactttcttcacacccagattactcctcattagtttgcccagtttattttgtgtataacatttatcccaacctgaaattatctcattt----gtttg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76945053 1420 + 107442819 AGCTGAGTTGCACTGAAACTAGGCATGGTAGCCCAGCAGATTCTGTGGTAGCC-AATGCCTGTGCAAGGATATGTCTGTGTAGTGTCCCTGCCCAGGTCCACCTCCCTGAAGTGCTGGGAGATGTTCCTGTGACCATACAGCTGGGTAGGAACAGAGTTAGATGAATGGTCTTCCTCCCCCTAGGTAGCTTTTTCACTGTGAGTGACTC---------------------------------------------------A-CCCCTGTCAAAGCTTCAGAGATCAAGAGTTTTCCAGAGTTATGACACCCAAACCTAAGCTATTGTTTTCCACATGTGGTTTCTGTCCACAGAGAGTACATGTTTCTCCAAAAATTCTTGCCATTGAG-AAAGGAGTTTTAAGTCACAGAGCATCC-AAATAAGCATACGGCCAACACTTGCCAGCTGTTACAGTCTGTCTGGAAGCTTCATATTGGCTGTTCTGGATGGTTTAATAACTCAGTATCGACTTTA----CTTCCAAACTGATGACAGTTTAAGAGA-TTTTTCTGAACCTATTGA--------CTTAGcatacattttt-taatagttGGAATTTCTAATGACTGAG-TCCTGAAATGAACTTGCTGGAACTTCTAGAAGGTTCAGAGTTCAACCTGGGTCAGAACAAGGGACAAGCTGGCCATTTATCAAGTACCTAC-TTTGTGCTGGGCAGCACATGCTCTCTTGTTTAGTCCTTAATACGCTACAATAACA----TCAAATTTAGGGGAAGAAACTGAAGTTTCAGGAAATTTAAA--TAGTTTGATTCCTCCTGTTTCATTGCCACTCTTCCCCAAATTCCAGACGAAACCCTTCAGTGACACCCCTAAAATTCATCTCAAACATGtccact--tctctctctccagcCACCACCCTAGTCTAAGTTGCCATCATTT----CTTAAACGACTTCAAT---ATCTTTGTAGCTGGATCTTCTCTTCCACCTTACTCTCTCTATACTCC----------AGAGAGAGAGATGCAGCAGCCAGAATCATTTCTTTGAAATGGAAATCAAATCTTGGC-CCTCCCCTGTGTGTAACTG-TTCTATGGCCTTCCGAGTAAAACTTCATCCCATACTGTGGTTTTTGAGGTCCTGCACAGTTGGATCACTCCCCACTTTGCTGGCTTCATCTGCTTTCATTCTGCCACAATC--AGAGTCCCAGAGTCCACATAGTCACGTGGGCCTTCTCTCTGTTCCTTGAGTCCCAAGGC----CTTTCCTGG--------CCCAGGGCCAGTGCTCTGCACAGGGGgtgcctccttccccagccatTCCCATATCAAGCTGGCTCCCACGCTTCTATCCCAGGTCAAGTGCTTCCTCTCAGAAAGTAACATTCCTGACCGCCGCGCAGTTTATAACCACTTTCTTCATACCCAGATTACTCCTCATTAGTTTGCCCAGTTTATTTTGTGTATAACATTTATCCCAACCTGAAATTATCTCATTT----GTTTG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81209534 1420 + 108555830 AGCTGAGTTGCACTGAAACCAGGCATGGTAGCCCAGCAGATTCTGTGGTAGCC-AACGCCTGTGCAAGGATATGTCTGTGTAATGTCCCTGCCCAGGTCCCCCTCCCTGAAGTGCTGGGAGATGTTCCTGTGACCATACAGCTGGGTAGGAACAGAGTTAGATGAATGGTCTTCCTGCCCTTAGGTAGCTTTTTCACTGTGAGTGACTC---------------------------------------------------A-CCCCTGTCAAAGCTTCAGAGATCAAGAGTTTTCCAGAGTTATGACACCCAAACCTAAGCTATTGTTTTCCACATGTGGTTTCTGTCCACAGAGAGTACATGTTTCTCCAAAAATTCTTGCCATTGAG-AAAGGAGTTTTCAGTCACAGAGCATCC-AAATAAGCATACGGCCAACACTTACCAGCTGTTACAGTCTGTCTGGAAGCTTCATATTGGCTGTTCTGGATGGTTTAACAACTCAGTATCGACTTTA----CTTCCAAACTGATGACAGTTTAAGAGA-TTTTTCTGAACCTATTGAG-------CTTAGCATACATTTTT-TAATAGTTGGAATTTCTAATGACTGAG-TCCTGAAATGAACTTGCTGGAACTTCTAGAAGGTTCAGAGTTCAACCTGGGTCAGAACAAGGAACAAGCTGGCCATTTATCAAGTACCTAC-TTTGTGCTGGGCAGCACATGCTCTCTTGTTTAGTCCTTAATACGCTACAATAACA----TCAAATTTAGGGGAAGAAACTGAAGTTTCAGGAAATTTAAA--TAGTttgattcctcctgtttcattgccactcttccccaaattccagacgaaacccttcagtgacacccctaaaattcatctcaaacatctccacttctctctctctccagccaccaccctagtctaagctgccatcattt----cttaaacgacttcagt---atctttgtagctggatcttctcttccaccttactctctctatactcc------------agagagagatgcagcagccagaatcatttctttgaaatggaaatcaaatcttggc-cctcccctgtgtgtaactg-ttctatggccttccgaataaaacttcatcccatactgtggtttttgaggtcctgcacagttggatcactcccgactttgctggcttcatctgctttcattctgccacaatc--agagtcccagagtccacatagtcacgtgggccttctctctgttccttaagtcccaaggc----ctttcctgg--------cccagggccagtgctctgcaca-gggctgcctccttccccagccattcccatatcaagctggctcccacgcttctatcccaggtcaagtgcttcctctcagaaaggaacattcctgaccgccgcgcagtttataaccactttcttcatacccagattactccgcattagtttgcccagtttattttgtgtagaacatttatcccaacctgaaatgatctcattt----gtttg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111444042 1447 - 210400635 AGCTCAGCTACACTGAAACCAGGCATGGTAGCCCAACAGATTTTGCGGTAGCCAAAGGCCTGTGCAAGGACATGTCTGTATAGTGTCCCTGCCCAGGTCCCCCATCCTGAAGTGCTGGGAGATGTTC------CCATACAGCTGGGCAGGAACAGAGTAGAATGAATGGTCCTCCTACCCCTAGGTAGCTTTTTCATTATGAGTGACTCAGAAAGCTAGAGTCAGATCAGT--TCCTTGTGTGTACCCTGTAAGCCAGGAACCCCCTGTCAAAGCTTCAAAAATCAAGAGTTTTCCAGAGCTATGACACCCAAACCTATGCTATTGTTTTTCATGTGTAGTT----TCCACAGAGAGTACATGTTTCTCCAAATATTCTTGCCACTGAG-AAAGGAGTTTCAAGTCACAGAGCACCCAAAATAAGCATAAGGCAAACACTACTCAGCTGTTACA----GTCTGGAAGCTTTATAATGGCTGTTCTGGGTGGATTAACAACTCAATATTAACTTTA-----TTCCAAATTGATGACAGTTTAAGAGATTTTTTTTGAGCCTATTGAG-------CTTAGCATACATTTTG-TAATAGTTGGAATTTCTAATGACTGAG-TCCTGAAATGAACTTGCTTG----TCTAGATGATTCAGAGTTCAACCTGGGTCAGAACAAGGGACAAGCTGGCTGTTTATCAATTACCCAC-TTTGTGCTGGGCAGCACATGCTCCCTTGTTTAGTCCTCAATACACTACAATAACACCTTCCAAATTTAGGTGAAGAAACTGAAGTTTCAGGAAATCTAAA--TAGTttgattctttctgtttccttgttactcttttccaaattccagacagaacccttgagtgacacctctaaaatttatctcaaacatgtccact--tctctct-------------cctagtctaagccaccattatttcctacttaaactactttgat---accttcctagctgtttcttctcttccaccttgctgtctgtatattcc------agaaagagagagagatgcagcagccagaatcatttctttgaagcagaaatcagatcttggc-cctcccctgtggaaaacta-ttccatggcctttaaaataaagcttcatcccatattctagcttttaagatccttcacagtcagatcactgcccactttgctagcttcatctgccttcattctgccgtgattg-caagtcccacagtccac--agttgcctgggccttctctctgttccttgagtcccaaggc----ttttcccga--------cccagggctagtgctctgcacaggggatgcctccttccccagtcattctcatgacaagctgactcccgtgcttctgtcccaggtcaggtgcttcctctcagaaaggaacattcctgactgcc---cagttcataacccctttccccatacccagataactccccattaatttgcctagtttattttgtgtttaacatttatcccaatctgaaatgatctcattt----gt--- i calJac3.chr1 C 0 C 0 s mm10.chr19 38083742 1400 - 61431566 AATTGAACTATACCAAATTCAGAATTGGTAGACTAGCATGCTTT-CAGTGACTAAAGATTTGGGCAAGTGCATGTTTTCATAAAATCCTTGCTTAGCTCTCCCACTCTGAGATGCTGGGAGATATCCCTG----CATGC----------TCACAGATTTGGATGGATGCTCTTTGGATCCTTAAGAAGCT---------------------------AGAGTTAGATGTGTAGTCCTTGTATAA----------------T-CACCCTTCAATGCCTCCAAG---AGAAGTATTTCAGATGTACAGTA-CCAAATCTATACAATTGTTCCCCGAATGTGGTTTCTGACCACAGAAGGTA--TGTTTCTCCAGATACTCATCACATTTAGAAAAAGAGTGTTGACTCACAAGTCATGGAAAATAGGCACAGGATAAGGACTTGTCAGCAGTTACATAGTGTCTAGAA-CTGTCTTTTGGCTGCTTTCTACAGTTAGATCACTCGATATTTATTTTCACTTATTCTAAACTGGAGGAAGCATAAGAGTTTTTTTCTGAGCATATTGAGCATTGATCTTCACATACATTTTTATAATAGTTGGGATTTATAGTGACTGAGATTCTGCAATGAAATTCCTGGGACTTCTAGACCATTCCAGGATCAACCTAGGTCAAAACTAAGGCCTACATGGCTGCTCATCGACTATCTACTTTTGTGCCCAGCAGTGTACTCTATCCCTATCAATCCTTAACATCCTCCAACAAT-----CCATTTACAGGGAAGGAGGCTGAGAGCTCAGCGTGTTAGAACGTCGTCGGATTCTTGTTAGTTTCTCGGTACTCTCCATCAGGCCACAGGCAAGATCATTACGTTGGCTCCCTAACGTGCACCCCAGATTTGttctct---ctgtctcacttgccaccacctcacacaaaatcaccatcat-----actcaccccagttccatgagacctcactagtt---tctgtgaccccagc-tgcagtttctctgctct-------------------gaaccagcagtcag-atcactttcctgaagcagaagtcagaaagtgccatttcccctat---aacctgctcccacagcctgcaggacctagctgcctctttgactatagcttgtagaggtccacgtgatctggtcctcatctacactgctgactttaaacccctccactctgc-----tc--ataggtgcacagtct---------caagggacttccctctg-gccctgagtgtgaaggccatgcttttatgggcttttcacatgtaatcaatcccttctgcattgaatg--tccttccccAGCAGTTCCCACATCCC-TTGGTTCTCAGGCCAATGTGCCACAAGAAGGGCTTCCTCTCAGACAGGAACCTTCCAGACCACT---CAGTTCGT--CCCCTTTCTCCATCCTCAGATTGTTCC-CAACATATTGATTCTCTCATTTTGTGCACCACAGCTATCCCAATCCAAAATTATCTAAGTT----TTCAT i mm10.chr19 I 704 C 0 e canFam3.chr1 35327626 925 - 122678785 I a score=343122.000000 s hg38.chr9_GL383541v1_alt 127222 84 + 171286 ttacttgtttattgtccatctcttttcctgtgaaaatacagccttcatgaggacagggaccttgtcggtcttgttcatctctgt s panTro4.chr9 68692622 84 + 137840987 ttacttgtttattgtccatctcttttcctgtgaaaatatagccttcatgaggacagggaccttgtcggtcttgttcatctctgt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64847837 84 + 135191526 ttacttgttcattgtccatctcttttcctgtgaaaatatagccttcatgaggacagggaccttgtcggtcttgttcatctctgt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57887614 84 - 122973662 ttacttgttcattgtccatctcttttcctgtgaaaatatagccttcacgaggacagggaccttgccggtcttgttcatctctgt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79817118 84 + 112192347 ttacttgttcattgttcatctcttttcctgtgaagatatagcattcatgaggacagggaccttgtcggtcttgttcatctctgt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80897029 84 + 112612857 ttacttgttcattgttcatctcttttcctgtgaagatatagcattcatgaggacagggaccttgtcggtcttgttcatctctgt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76946473 84 + 107442819 TTACTTGTTCATTGTTCATCTCTTTTCCTGTGAAGATATAGCATTCATGAGGACAGGGACCTTGTCGGTCTTGTTCATCTCTGT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81210954 84 + 108555830 ttacttgttcattgttcatctcttttcctgtgaagatatagcattcatgaggacagggaccttgtcggtcttgttcatctctgt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111445489 83 - 210400635 ttacttgttcattgtgcatctcttttcctatgaaaatagagccttcacggggacacagaccttgtcggtcttgttcatct-tgt i calJac3.chr1 C 0 C 0 s mm10.chr19 38085142 81 - 61431566 TTACCTTTTTATTACCCATCTCTT---CTATAAAAGTAAAGCCTTCATATACACAAGGACCTTATCAGCTTTTATCATCTTTGT i mm10.chr19 C 0 I 207 s canFam3.chr1 35328551 84 - 122678785 ttaaatgttcattgtccatctctcttcttacaaaaatataatcttcctgaggacaagggccttgtcagccttgtccatttctgt i canFam3.chr1 I 925 C 0 a score=695840.000000 s hg38.chr9_GL383541v1_alt 127306 197 + 171286 atccacagcatctagcactgtgccctggtgcaaagtaggtcatcagtaaaattctgttcaataaatTTTGTTTGGTACATATGTGGTCAATGAATGAA-----------------------------------TAAAAGAATGAGTGGGTGGACTTTCTAGGgttgggaagtggcagagctggggtctgaatca------tggtctagtcaactttgaagcctg--ccttttagtgcaGG s panTro4.chr9 68692706 197 + 137840987 atccacagcatctagcactgtgccctggtacaaagtaggtcatcagtaaaattctgttcaataaatTTTGTTTGGTACCTATGTGGTCAATGAATGAA-----------------------------------TAAAAGAATGAATGGGTGGACTTTCTAGGgttgggaagtggcagagctggggtctgaatca------tggtctagtcaactttgaagcctg--ccttttagtgcaGG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64847921 197 + 135191526 atccacagcatctagcaccgtgccctggtgcaaagtaggtcatcagtaaaattctgttcaataaatTTTGTTTGGTACCTATGTGGTCAATGAATGAA-----------------------------------TAAAAGAATGAATGGGTGGATTTTCTAGGgttgggaagtggcagagctggggtctgaatca------tggtctagtcaactttgaagcctg--ccttttAGTGTAGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57887698 197 - 122973662 atccacagcatctagcactgtgccctggtgcaaagtaggtcatcagtaaaattctgctcaataaatTTTGTTTGGTACCTATGTGGTCaatgaatgaa-----------------------------------taaaagaatgaatgagtgGACTTTCTAAGgttgggaagtggcagagctggggtctgaatca------tgatctagtcaactctgaaggctg--ccctttAGTGCAGG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79817202 197 + 112192347 atccacagcatctagcactgtgccctggtgcaaagtaggtcatgagtaaaattctgttcaatacatTTTGTTTGGTACCTATGTGGTCAATGAATGAA-----------------------------------TAAAAGAATGAATGAGTAGACTTTCTAAGgttgggaagtggcaaagctggggtctgaatca------tggtctagtcaactctgaagcctg--ccttttagtgcaGG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80897113 197 + 112612857 atccacagcatctagcactgtgccctggtgcaaagtaggtcatgagtaaaattctgttcaatacatTTTGTTTGGTACCTATGTGGTCaatgaatgaa-----------------------------------taaaagaatgaatgaGTAGACTTTCTAAGgttgggaagtggcaaagctggggtctgaatca------tggtctagtcaactctgaagcctg--ccttttAGTGCAGG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76946557 197 + 107442819 ATCCACAGCATCTAGCACTGTGCCCTGGTGCAAAGTAGGTCATGAGTAAAATTCTGTTCAATACATTTTGTTTGGTACCTATGTggtcaatgaatgaa-----------------------------------taaaagaatgaatgagtagaCTTTCTAAGGttgggaagtggcagagctggggtctgAATCA------TGGTCTAGTCAACTCTGAAGCCTG--CCTTTTAGTGCAGG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81211038 197 + 108555830 atccacagcatctagcactgtgccctggtgcaaagtaggtcatgagtaaaattctgttcaatacatTTTGTTTGGTACCTATGTGGTCaatgaaggaa-----------------------------------taaaagaatgaatgaGTAGACTTTCTAAGgttgggaagtggcagagctggggtctgaatca------tggtctagtcaactctgaagcctg--ccttttAGTGCAGG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111445572 205 - 210400635 atccacagcatctagcactgtgctctggggaaaagtaggtcatgagtaaaattctgttcaataaatTTTGTTTGGTACCTATGTGGTCAATGAATGAA-----------------------------------CAAAAGAATGAATGAGTGGACTTTCTAAGGGTGGGaaatggcagagctggggtttgaatcacggtctcggtctcgtcaactctgaaccctgccccctttAGGGCAGG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35328635 229 - 122678785 atctacagcatctaacactgtgc-caggtgcaaagtagatcatcagaaaaattttgttcaataaatTTAGTTTGATATCTATGTGGACAATGAATAAGTAGATGACTAATGAAAAGAACAATGAAAAATGACTTAAGAAAAGGAACAAATGGACTTTCTAAGgctggtaagtggcatagc-aggattttaccca------tg-tttatccagctctgaaggatg--ccctttGGCATGGG i canFam3.chr1 C 0 I 207 e mm10.chr19 38085223 207 - 61431566 I a score=1061620.000000 s hg38.chr9_GL383541v1_alt 127503 332 + 171286 GTATCTTTGGGTGGTCAAGGTCTCTCTCCAATCTTAGGGAAGGCCTGTTCTTGCGCACCTGGAGAAAATGAGGCTCTTCAAGCCTGCCTTGGGGTGTAGGCaccttttg-----ttatttaattctcacagtactcctgtgagggaagtaaagtaTTTCTTTTCAGTGTCCTTGACATTTTAGAATGCAGT----CT------AGCTTAAGGTCCCCAAGATGATCTAGTAGAAATGAATGCCTAAACTGAGAGCCTGGCACACATGTGTCA--------------------CCTGCCTATGCTTTTTGTGACCTCTGAACCCA-TTCT-AAAGCATGTCAGGTGTG-TTCTTGAGGGCCCAACTCAAAG s panTro4.chr9 68692903 330 + 137840987 GTATC--TGGGTGGTCAAGGTCTCTCTCCAATCTTAGGGAAGGCCTGTTCTTGTGCACCTGGAGAAAATGAGGCTCTTCAAGCCTGCCTTGGGGTGTAGGCaccttttg-----ttatttaattctcacagtactcctgtgagggaagtaaagtaTTTCTTTTCAGTGTCCTTGACATTTTAGAATGCAGT----CT------AGCTTAAGGTCCCCCAGATGATCTAGTAGAAATGAACGCCTAAACTGAGAGCCTGGCACACATGTGTCA--------------------CCTGCCTATGC--TTTGTGACCTCTGAACCCATTTCT-AAAGCATGTCAGGTATGATTCTTGAGGGCCCAACTCAAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64848118 332 + 135191526 GTATCTTTGGTTGGTCAAGGTCTCTCTCCAATCTTGGGGAAGGTCTGTTCTTGCGCACCTGGAGAAAATGAGGCTCTTCAAGCCTGCTTTGGGGTGTAGGCACCTTTTG-----TTATTTAATTCTCATAGTACTCATGTAAGGGAAGTAAAGTATGTCTTTTCAGTGTCCTTGACATTTTAGAATGCAGT----CT------AGCTTAAGGTCCCCCAGATGATCTAGTAGAAATGAATGCCTAAACTGAGAGCCTGACACACATGTGTCG--------------------CCTGCCTATGC--TTTGTGACCTCTGAACCCATTTCT-AAAGCATGTCAGGTGTGATTCTTCAGGGCCCAACTCAAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57887895 330 - 122973662 GTATCTTTGGGTGGTCAAGGTCTCTCTCCAATCTTGGGGAAGGCCTGTTCTTGTGCACCTGGAGAAAATGAGGCTCTTCAAGCCTGCCTTGGGATATAGGtaccttttg-----ttatttaattctcacaatactcctgtgagggaagtaaagtaTTTCTTTTCAGTGTCCTTGACATTTTCAAATGCAGT----CT------AGCTTAAGATCCCCCAGATGATCTAGTAGAAACGAATGCCTAAACTGAGAGCTTGGCACAC--GTGTCA--------------------CCTGCCTATGC--TTTGTGACCTCTGAACCCATTTCT-AAAGCATGTCAGGTGTGATTCTTCAGGGCCCAACTCAAAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79817399 332 + 112192347 GTATCTTTGGGTGGCCAAGATCTCTCTCCAATCTTGGGGAAGGCCTGTTCTTGTGCACCTGGAGAAAATGAGGTTCCTCAAGCCTGCCTTGGGGTGTAGGtaccttttg-----ttatttaattctcacaatactcctgtgagggaagtaaagtaTTTCCTTTCAATGTCCTTGACATTTTAGAATGCAGT----CT------AGCTCAAGGTCTCCCAGATGATCTAGTAGAAATGAATGCCTAAACTAAGAGCCTGGCACACATGTGTCG--------------------CCTGCCTATGC--TTTGTGACCTCTGAACCCATTTCT-AAAGCGCGTCAGGTGTGATTCTTCAGGGCCCAAATCAAAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80897310 332 + 112612857 GTATCTTTGGGTGGCCAAGATCTCTCTCCAATCTTGGGGAAGGCCTGTTCTTGTGCACCTGGAGAAAATGAGGTTCCTCAAGCCTGCCTTGGGGTGTAGGtaccttttg-----ttatttaattctcacaatactcctgtgagggaagtaaagtaTTTCCTTTCAATGTCCTTGACATTTTAGAATGCAGT----CT------AGCTCAAGGTCTCCCAGATGATCTAGTAGAAATGAATGCCTAAACTAAGAGCCTGGCACACATGTGTCG--------------------CCTGCCTATGC--TTTGTGACCTCTGAACCCATTTCT-AAAGCGCATCAGGTGTGATTCTTCAGGGCCCAAATCAAAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76946754 332 + 107442819 GTATCTTTGGGTGGCCAAGATCTCTCTCCAATCTTGGGGAAGGCCTGTTCTTGTGCACCTGGAGAAAATGAGGTTCCTCAAGCCTGCCTTGGGGTGTAGGTACCTTttg-----ttatttaattctcacaatactcCTGTGAGGGAAGTAAAGTATTTCTTTTCAATGTCCTTGACATTTTAGAATGCAGT----CT------AGCTCAAGGTCTCCCAGATGATCTAGTAGAAATGAATGCCTAAACTAAGAGCCTGGCACACATGTGTTG--------------------CCTGCCTATGC--TTTGTGACCTCTGAACCCATTTCTAAAAGCGCGTCAGGTGTGATTCTTCAGGGCCC-AATCAAAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81211235 332 + 108555830 GTATCTTTGGGTGGCCAAGATCTCTCTCCAATCTTGGGGAAGGCCTGTTCTTGTGCACCTGGAGAAAATGAGGTTCCTCAAGCCTGCCTTGGGGTATAGGTACCTTTTG-----ttatttaattctcacaatactcctgtgagggaagtaAAGTATTTCTTTTCAATGTCCTTGACATTTTAGAATGCAGT----CT------AGCTCAAGGTCTCCCAGATGATCTAGTAGAAACAAATGCCTAAACTAAGAGCCTGGCACACATGTGTCA--------------------CCTGCCTATGC--TTTGTGACCTCTGAACCCATTTCT-AAAGCACATCAGGTGTGATTCTTCAGGGCCCAACTCAAAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111445777 337 - 210400635 A-ATCTTTGGGTGGTCAGGGTCTCTCTCCAGTCTTGGGGAAG--------------ACCTGGAGAAA--GAGGCTCCCCATGCCTGCCTTGGGGTATAGGTACCTTTTG-----TTATTTAATTCTCACAATACTCCTTTGAGTGAAGTAAAGTATTTCCTTTCAGTGTCCTTGGCATTTTAGAATGCAGTCAGACT------AGCTCTAGGTCCCCCAGATGATCTAGTAGAAATGAATGCCTAAACTGAGAGCCTGGCATAC--GTGTCGCCATTGTGCAGAATAGCCTTCCTGCCTATGC--TCTGTGACCTCTGGGCCCATTTCT-AAAGCAAGTCAGATGTGATTCATTAGGGCCCAACTCAAAG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35329071 326 - 122678785 GTGTCTTTAGATGCTCAAGGTTTCTACCCAGTCTCAGAGAAGGCTTATTCTTGAGCAGCTGCAGAAAGTGAGACTCC-CTAGTGTGTCTTGAGGCATAGGCACCTTCTGCTATTTTATTTAATTCTTACCACATTCCTGCAAGGGAAGTGAGACATTTCCTTTTAGTGTCCTGGCCACCCTAG-ATGCAGA----ATCAAATGGATCCAACGTC------ATGTTCT-GCAGAAGTGAATGCCTAAGCTCAGAGCTTACTGCACTGTTGTAG----------GAA-------GGAGCCACTGC--TTCATGCCCTCGCCACC-----CT-AAAGCTGGTCAAGTA------GTCAGGACCTAACTCAGAG i canFam3.chr1 I 207 I 401 e mm10.chr19 38085223 207 - 61431566 I a score=131118.000000 s hg38.chr9_GL383541v1_alt 127835 45 + 171286 ACAGTACGTGCCTTCATGAACATTATTTCCACCTCTCAGTGAGTT s panTro4.chr9 68693233 45 + 137840987 ACAATACGTGCCTTCATGAACATTATTTCCACCTCTCAGTGAGTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64848450 45 + 135191526 ACAGTACCTGCCTTCATGAACATTATTTCCACCTCTCAGTGAGTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57888225 44 - 122973662 ACAGTACCTGCTTTCATGAACATTATTTCCACCTCTCA-TGAGTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79817731 45 + 112192347 ACAGGACCTCTTTTCATGAACATTATTTCCACCTCTCAGTGAGTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80897642 45 + 112612857 ACAGGACCTATTTTCATGAACATTATTTCCACCTCTCAGTGAGTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76947086 45 + 107442819 ACAGGACCTATTTTCATGAACATTATTTCCACCTCTCAGTGAGTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81211567 45 + 108555830 ACAGGACCTATTTTCATGAACATTATTTCCACCTCTCAGTGAGTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111446114 45 - 210400635 ACAGTACCTGCTTTCATGAACATTATTTCCATCTCTCAGTGAGTT i calJac3.chr1 C 0 C 0 e mm10.chr19 38085223 207 - 61431566 I e canFam3.chr1 35329397 401 - 122678785 I a score=199028.000000 s hg38.chr9_GL383541v1_alt 127880 65 + 171286 GTCACATGTGACCAGAGCTGAGGTGAGTGAGCAGCAGCCCGCACAGAACTGTAAAGAAGTCCAGC s panTro4.chr9 68693278 65 + 137840987 GTCACATGTGACCAGAGCTGAGGTGAGTGAGCAGCGGCCCGCACAGAACTGTAAAGAAGTCCAGC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64848495 65 + 135191526 GTCACATGTGACCAGAGCTGAGGTGAGTGAGCAGCAGCCTGCACAGAACTGTAAAGAAGCCCAGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57888269 62 - 122973662 GTCACATGGGACCAGAGCTGAGGTGAGTGAGCAGCAGCCTGTGCAGAATTGTA---AAGTCCAGC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79817776 65 + 112192347 GTCACACGGGACCAGAGTGGAGGTGAGTGAGCAGCAGCTCATGCAGAACTGTAAAGAAGTCCAGC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80897687 65 + 112612857 GTCACACGGGACCAGAGCGGAGGTGAGTGAGCAGCAGCTCATGCAGAACTGTAAAGAAGTCCAGC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76947131 65 + 107442819 GTCACACGGGACCAGAGCAGAGGTGAGTGAGCAGCAGCTCATGCAGAACTGTAAAGAAGTCCAGC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81211612 65 + 108555830 GTCACACGGGACCAGAGCGGAGGTGAGTGAGCAGCAGGCCATGCAGAACTGTAAAGAAGTCCAGC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111446159 65 - 210400635 GTCCCATGAGGCCAGAGCTGAGCTGAGTGAGCAGCAGCCTGTGCAGAACTATAAGGAAGTCCAGC i calJac3.chr1 C 0 I 290 s canFam3.chr1 35329798 60 - 122678785 GTCATGTGAGCCCAGAGCTGAGCTGAGTGAGAGGCAGCAT-----GGGCCTCAAAGAAGACAAAA i canFam3.chr1 I 401 C 0 e mm10.chr19 38085223 207 - 61431566 I a score=1314887.000000 s hg38.chr9_GL383541v1_alt 127945 397 + 171286 CTTTCAGCTTCTCTCCA------GTTATTTCCCTCACTCCTGATGCCTGCCTTCTGCCTCCCCTGTGCCTTTCTGATGGCCTCCCACTCTGGATGTTGCTTTACCTTGCTTTCTCCTATTTGCAGTTATCCAACCTGTTTTAAGGACAATGGGCTGCTT--ATTAATAACCCCTTGCTGTCTTCCCTGGGTAGTTTAAT--------CTTTGGCAGAAA-----CTATAGGGATGA-AGCAA-------------CAACAGACCATTCTAGCAAAGTAGCCTTATGGACAGATTCTGTGTGATATTATCACAGCCTCCAACAACAGAGg----------------------------ctaggctgttgttgaacactc----t-ccagcacttcatttgatgccacagctccctaggaaggaaagcagtccagcgccatttaacagatgaggaatgctcaggcag s panTro4.chr9 68693343 410 + 137840987 CTTTCAGCTTCTCTCCA------GTTATTTCCCTCACTCCTGATGCCTGCCTTCTGCCTCCCCTGTGCCTTTCTGATGGCCTCCCACTCTGGATGTTGCTTTACCTTGCTTTCTCCTATTTGTAGTTATCCAACCTGTTTTAAGGACAATGGGCTGCTT--ATTAATAACCCCTTGCTGTCTTCCCTGGGTAGTTTAAT--------CTTTGGCAGAAA-----CTATAGGGATGA-AGCAATGCTAAGAGTTTCCCTCAGACCATTCTAGCAAAGTAGCCTTATGGACAGATTCTGTGTGATATTATCACAGCCTCCAACAACAGAGg----------------------------ctaggctgttgttgaacactc----t-ccagcacttcatttgatgccacagctccctaggaaggaaagcagtccagcgccatttaacagatgaggaatgctcaggcag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64848560 410 + 135191526 CTTTCAGCTTCTCTCCA------GTTATTTCCCTCACTCCCGATGCCTGCCTTCTGCCTCCCCTGTGCCTTTCTGATGGCCTCCCACTCTGGATGTTGCTTTACCTTGCTTTCTCCTATTTGCAGTTACCCAACCTGTTTTAAGGACAATGGGCTGCTT--ATTAATAACCCCTTGCTGTCTTCCCTGGGTAGTTTAAT--------CTTTGGCAGAAA-----CTATAGGGATGA-AGCAATGCTAAGAGTTTCCCTTAGACCATTCTAGCAAAGTAGCCTTATGGACAGATTCTGTGTGATATTATCACAGCCACCACCAACAGAGg----------------------------ctaggctgtttttgaacactc----t-ccagcacttcatttgatgccacagctccctaggaaggaaagcagtccagcgccatttaacagatgaggaatgcttaggcag i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57888331 405 - 122973662 CTTTCAGCTTCTCTCCT------CTTATTTCCCTCACTCCTGATGCCTGCCTTCTGACTCCCCTGTGCCTTTCTGATGGCCTCCCACTCTGGATGTTGCTTTACCTTGCTTTCTCCTATTTCCACTTACCCAACCTGTTTTAAGGACAATGGGCTGCTT--ATTAATAACCCCTTGCTGTCTTCCCTGGGTAGTTTAAT--------CTTTGGCAGAAA-----CTACAGGGATGA-AGCAATGCTAAGAGTTTCCCTTAGACCATTCTAGCAAAGTAGCCTTATGGACAGATTCTGTGTGATATTATCACAGCCGCCAACAAcag---------------------------------aggctgttgttgaacactc----t-ccagcacttcatttgatgacacagctccctaggaaggaaagcagtccagcaccatttaacagatgaagaacgctcaggcag i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79817841 403 + 112192347 CTTTCAGCTTTTCTCCT------CTTATTTCCCTCACTCTTGATGGCTGCCTTCTGCCTCCCCTGTCCCTTTCTGATGGCCTCCCACTCTGGATGTTGCTTTCCCTTGCTTTCTCCTATTTGCATTTACCCAGCCTGTTTTAAGGACAATGGGCTGATT--ATTAATAACCCCTTGCTATCTTCCCTGGGTAGTTTAAT--------CTTTGGCACAAA-----CTATAGGGATGA-AGCAATGCTAAGAGTTTCCCTTAGACCATTCTAGCAAAGTAGCCTTTTAGACAGATTCTGTGTGATATTATCACAGCTGCCAACAAc-----------------------------------aggctgttgttgagcactc----t-ccagcacttcatttgatgccacagctccctaggaaggaaagcagtccagcaccatttaacagatgaggaacgctcaggcag i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80897752 403 + 112612857 CTTTCAGCTTTTCTCCT------CTTATTTCCCTCACTCTTGATGGCTGCCTTCTGCCTCCCCTGTCCCTTTCTGATGGCCTCCCACTCTGGATGTTGCTTTCCCTTGCTTTCTCCTATTTGCATTTACCCAGCCTGTTTTAAGGACAATGGGCTGATT--ATTAATAACCCCTTGCTATCTTCCCTGGGTAGTTTAAT--------CTTTGGCACAAA-----CTATAGGGATGA-AGCAATGCTAAGAGTTTCCCTTAGACCATTCTAGCAAAGTAGCCTTTTAGACAGATTCTGTGTGATATTATCACAGCTGCCAACAAc-----------------------------------aggctgttgttgagcactc----t-ccagcacttcatttgatgccacagctccctaggaaggaaagcagtccagcaccatttaacagatgaggaacgctcaggcag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76947196 403 + 107442819 CTTTCAGCTTTTCTCCT------CTTATTTCCCTCACTCTTTATGGCTGCCTTCTGCCTCCCCTGTCCCTTTCTGATGGCCTCCCACTCTGGATGTTGCTTTCCCTTGCTTTCTCCTATTTGCATTTACCCAGCCTGTTTTAAGGACAATGGGCTGATT--ATTAATAACCCCTTGCTATCTTCCCTGGGTAGTTTAAT--------CTTTGGCACAAA-----CTATAGGGATGA-AGCAATGCTAAGAGTTTCCCTTAGACCATTCTAGCAAAGTAGCCTTTTAGACAGATTCTGTGTGATATTATCACAGCTGCCAACAAC-----------------------------------AGGCTGTTGTTGAGCACTC----T-CCAGCACTTCATTTGATGCCACAGCTCCCTAGGAAGGAAAGCAGTCCAGcaccatttaacagatgaggaacgCTCAGGCAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81211677 401 + 108555830 CATTCAGCTTTTCTCCT------CTTATTTCCCTCACTCTTGATGGCTGCCTTCTGCCTCCCCTGTGCCTTTCTGATGGCCTCCCACTCTGGATGTTGCTTTACCTTGCTTTCTCCTATTTGCATTTACCCAACCTGTTTTAAGGACAATGGGCTGATT--ATTAAT-ACCCCTTGCTATCTTCCCTGGGTAGTTTAAT--------CTTTGGCACAAA-----CTATAGGGATGA-AGCAATGCTAAGAGTTTCCCTTAGACCATTCTAGCAAAGTAGCCTTTTAGACAGATTCTGTGTGATATTATCACAGCTGCCAACAAc-----------------------------------aggctgttgttgagcactc----t-ccagcacttcatttgatgccacagctccctaggaa-gaaagcagtccagcaccatttaacggatgaggaacgctcaggcaa i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111446514 397 - 210400635 CTTTCAGCCTCTCTCCT------CTCATTTCCCTCACTACCGATGCCTGC-------CTCCCCTGTTCCTTTCTGATGGCCTTCCACTCTGGGTGTTGCTTTACCTCGCTTTCTCCTATTCGCACTTATCCAGCCTGTTTTAAGGACAA-GAGCTGATTAGATTAATAACTCTCTGCTGTGCTCTCTGGGTAGTTTAAT--------CTTTGGCAGAAA-----CTATAGAGATGA-AGCAATGCTAAGAGTTTCCTGTAGACCATTCTAGCAAAGTAGCCTTATGGACAGATTCCATGTGA---TATCACAGCTGCCCACAACAG---------------------------------AGGCTGTTGTTGaacgctc----tcccaacacttcatttgatgccatagctccctaggaagggaagcagtacagcaccatttaacagatgagaaaggctcaggcag i calJac3.chr1 I 290 C 0 s canFam3.chr1 35329858 462 - 122678785 CCATTGGCCTTTCCCCTACATGCTTCTCTTCCGTCACTCCTAATATATACACACTGCCTCATCTGTGCTTTCCCAGATGCCTTCTATTCTGGATGCTTCCATTCCTTTCTTTCCCCCAGAAGTCCTTATCCAGACTGTTTTAAGGACAATGGGCTGGTTCAATTAATAACTACCTGCTAT-TTCCATGGACGGTCTAATGTTGGAAACTCTAATATATAGCTCTTTAAAGAAATGGTAGCAATGGCAACAATTTCCCTGAGGCCATTCTAGCAAAGTAGCCGTATGGACAGATTCTGTGTACTATTGGCACAGCTGCCCACAACAATGGGAACCttcataaaatgctccctcggtgccggggaccatactgagcacttgatgt-atgttgcttcatttgatgctgtgacacctgaggaagg-aagcagtatagctccacttaacagatgaggaaagctgaggcag i canFam3.chr1 C 0 C 0 e mm10.chr19 38085223 207 - 61431566 I a score=693164.000000 s hg38.chr9_GL383541v1_alt 128342 190 + 171286 aaaattaaggacattgttcaacattacacagctattaagtggctgaactgaga--agcagatccagg--tctttttgactccagaattgatgct-ttttacactAAGCCTAGTGTAAAAAGCCTCCCAGCCCTCGCCTGGCTAACATCAAAAGTGTAGGATCAGGT------------CCAGCCCTAACT--CTCAGGATTCCTG--AAAA s panTro4.chr9 68693753 190 + 137840987 aaaattaaggacattgttcaacattacacagctattaagtggctgaactgaga--agcagatccagg--tctttttgactccagaattgatgct-ttttacactAAGCCTAGTGTAAAAAGCCTCCCAGCCCTCGCCTGGCTAACATCAAAAGTGTAGGATCAGGT------------CCAGCCCTAACT--CTCAGGATTCCTG--AAAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64848970 190 + 135191526 aaaattaaggacattgttcaacattacacagctattaagtggctgaactgagc--agcagatccagg--tctttttgactccagaattgatgct-ttttacactAAGCCTGGTGTAAAAAGCCTCCCAGCCCTCTCCTGGTTAACATCAAAAGTGTAGGATCAGGT------------CCAGCCCTAACT--CTCAGGATTCCTG--AAAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57888736 202 - 122973662 aaaattaaggacgttgttcaacattacacagctattaagtggctgaactgaga--agcagatccagg--tctttttgactccagaattgatgct-ttttacactAAGCCTAGTGTAAAAAGCCTCCCAGCCCTTGCCTGGCTAACATCAAAAGTGTAGGATCAGGTGAGAAGGGGAGCCCAGCCCCAACT--CTCAGGATTCCTG--AAAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79818244 202 + 112192347 aaaattaaggacattgttcaacattacacagctattaagtggctaaactgaga--agcagatccagg--tctttttgactctagaattgatgct-ttttacactAAGCCTAGTGTAAAAAGCCTCCTAGCCCTTGCCTGGCTAACATCAAAAGTATAGGATCAGGTGAGATGGGGAGTCCAGCCCTAACG--CTCAGGATTCCTG--AAAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80898155 202 + 112612857 aaaattaaggacattgttcaacattacacagctattaagtggctaaactgaga--agcagatccagg--tctttttgactctagaattgatgct-ttttacactAAGCCTAGTGTAAAAAGCCTCCTAGCCCTTGCCTGGCTAACATCAAAAGTATAGGATCAGGTGAGATGGGGAGTCCAGCCCTAACG--CTCAGGATTCCTG--AAAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76947599 202 + 107442819 AAAATTAAGGACATTGTTCAACAttacacagctattaagtggcTAAACTGAGA--AGCAGATCCAGG--TCTTTTTGACTCTAGAATTGATGCT-TTTTACACTAAGCCTAGTGTAAAAAGCCTCCTAGCCCTTGCCTGGCTAACATCAAAAGTATAGGATCAGGTGAGAAGGGGAGTCCAGCCCTAACG--CTCAGGATTCCTG--aaaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81212078 200 + 108555830 aaaattaaggacattgttcaacattacacagctattaagtggctaaactgaga--agcaaatccagg--tctttttgactctagaattgatgct-ttttacactAAGCCTAGTGTAAAAAGCTTCCTAGCCCTTACCTGGCTAACATCAAAAGTATAGGATCAGGTGAGAAGGGGAGTCCAGCCCTAA----CTCAGGATTCCTG--AAAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111446911 203 - 210400635 aaaattaaggacatcattcaaaatcacacagctattaagtggctgagatgaga--agcagatccagg--tctttttgattccagaattaatgct-ttttacactAAGCCTAGTACAAAAAGCC-CCCAGCCCTTGCCTGGCTAACATCAAAAGTATGGGATCAGGTGAGAAGGGGAGCCCAGCCCTAACT--CTCAGGATTTCTGAAAAAA i calJac3.chr1 C 0 C 0 s mm10.chr19 38085430 191 - 61431566 aaagtgaaggacacTGTTCAGTGC--CATGGCTTTGAAGTGGCAGGGCTGAGAGTGGCAGGGCCAGGACTCACTCAGACTCCAGAACACATGCT-GGAGGCAATGCGC--------AGGTGCCACCCAATCCTCTCTTG----ATGTCAAATG-ACAGTGTTGGATGGGAAGGAAAATCCAGCCCTAACA--CTCAGATTAGCTA--AGTA i mm10.chr19 I 207 I 3 s canFam3.chr1 35330320 187 - 122678785 agtattaaggacattgttcggtagcacacag-----agctggctgagatgaga--agtaaatccagg--tctttttgaattcagaatccatgttgtttTATACCAGGACT------TTATGCCCCTCAGCCCTCTCCTGG------TTGAAGGCATAGGATT-GGCAAGAAAGAGAGCCCAGCCCTACCTAACTCAAGATTTGTA--AAAA i canFam3.chr1 C 0 I 214 a score=1858251.000000 s hg38.chr9_GL383541v1_alt 128532 492 + 171286 AAATTT------GGACTTTATT--TTTAACCTTCTGGTGTTCTAGTTTAGAAATAACTTTGGCTCCTAGGAGGGGTCAAAATTC----------------------------------------------------------------------------------------------------------------------------------GGCATTATAGTttgagctagttatgta------accttcctgagccttccttttctttcatgtgtaaaatgggtataccaggagtatagccatatatccatagtacctggtaaagctcaaaggca----atgcatcatataaagttcttagcatataaagttcttagcataGTACCCACACATATCATT-----TATTAAATTTAGCTGA--------GCAGAGAGAAAA--------------------AGACTAATGAATGTTTTTTTCTTAGTCCTGATCCCCATAAGGTTTTATAGACAACATCTCTTTAATACGTGGATAATTCTACA-----CCTGA--------------TTTTTGCTCTGAAGT--TCTTTAAACTAAAAATCAGGTTAGAATTAAACC------TTTATTTTAATAAGATGATACTTTCTTAAAGAAATGGCTGCTTTTATACAATTATAAACAGTTTACAATAATA s panTro4.chr9 68693943 581 + 137840987 AAATTT------GGACTTTATT--TTTAACCTTCTGGTGTTCTAGTTTAGAAATAACTTTGGCTCCTAGGAGGGGTCAAAATTCAGGGTGCTTTAATGTAGACAAAGGAAAGC-----------------------------------TGTGGGTTAGA-GGAAAATGTAGCATAATGCATAAGACA-----tagtgccattgctggcactaatggcattatagtttgagctagttatgta------accttcctgagccttccttttctttcatgtgtaaaatgggtataccaggagtatagccatatatccatagtatctggtaaagctcaaaggca----atgcatcatataaagttcttagcataTAAAGTTATTAGCATAGTACCCACACATATCATT-----TATTAAATTTAGCTGA--------GCAGAGAGAAAA--------------------AGACTAATGAATGTTTTTTTCTTAGTCCTGATCCCCATAAGGTTTTATAGACAACATCTCTTTAATACGTGGATAATTCTACA-----CCTGA--------------TTTTTGCTCTGAAGT--TCTTTAAACTAAAAATCAGGTCAGAATTAAACC------TTTATTTTAATAAGATGATACTTTCTTAAAGAAATGGCTGCTTTTATACAATTATAAACAGTTTACAATAATA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64849160 569 + 135191526 AAATTT------GGACTTTATT--TTTAATCTTCTGGTGTTCTAGTTTAGAAATAACTTTGGCTCCTAGGAGGGGTCAAAATTCAAGGTGCTTTAACGTAGACAAAGGAAAGC-----------------------------------TGTGGGTTAGA-GGAAaatgtagcataatgcataagacacttggctgtgggtttgctggcactaatggcattatagtttgagctagttatgta------accttcctgagccttacttttctttcatgtgtaaaatgggtataccaggagtatagccatatatccatagtatatggtaaagatcaaaggca----atgcatcatataaagttc----------------ttagcatagtaccca-acatatCATT-----TATTAAATTTAGCTGA--------GCAGAGAGAAAA--------------------AGACTAATGAATGTTTTTTTCTTAGTCCTGATCCTCATAAGGTTTTATAGACAACATCTCTTTAATACGTGGATAATTCTATA-----CCTGA--------------TTTTTGCTGTAAAGT--TCTTTAAACTAAAAATCAGGTCAGAATTAAACC------TTTATTTTAATAAGATGATACTTTCTTAAAGAAATGGCTGCTTTTATACAATTATAAACAGTTTACAATAATA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57888938 568 - 122973662 AAATTT------GGACTTTATT--TTTAACCTTCTGGTGTTCTAGTTTAGAAATAACTTTGGCTCCTAGGAGGGGTCAAAATTCAAGGTGCTTTAACGTAGACAAAGGAAAGC-----------------------------------TGTGGGTTAGA-GGAAaatgtagcataatgcataagacacttggctgtgggtttgctggcactaatggcattatagtttgagcaagttatgta------accttcctgagccttacttttctttcatgtgtaaaatgggtataccaggagtatagccatatatccatagtatatggtaaagatcaaaggca----atgcatcatataaagttc----------------ttagcatagtacccacacacatCATT-----TATTAAATTTAGCTGA--------GCAGAGAGAGAA--------------------AGACTAATGAATGTTTTTTTCTTAGT-CTGATCCTCATAAAGTTTTATAGACAACATCTCTTAAATACGTGGATAATTCTATA----CCCTGA--------------TTTTTGCTGTGAAGT--TCTTTAAACTAAAAATCAGGTCAG--TTAAACC------TTTATTTTAACAAGATGATACTTTCTTAAAGAAATGGCTGCTTTTATACAATTATAAACAGTTTACAATAATA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79818446 571 + 112192347 AAATTT------AGACTTTATT--TTTAACCTTCTGGTGTTTTAGTTTAGAAATAACTTTGGCTCCTAGGAGGGGTCAAAATTCAAGGTGCTTTAACACAGACAAAGGAAAGC-----------------------------------TGTGGGTTAGA-GGAAaatgtagcataatgcataagacacttggctgtgggttcactggcacttatggcattacagtttgagctagttatgta------acctttctgagccttacttttctttcatgtgtaaaatgggtataccaggagtatacccatatatccatagtatatggtaaagaccaaagaca----atgcatcatataaagttc----------------ttagcatagttcccacacataTCATT-----TATTAAATCTAGCTGA--------GCAGAGAGAGAA--------------------AGACTAATGAATGTTTTTTTCTTAGTCCTGATCCTCATAAGGTTTTATAGACAACATCTCTTTAATACATGGATAATTCTATA----CCCTGA--------------TTTTTGCTGTGAACT--TCTTTAAACTAAAAATCAGGTCAGAGTTAAATC------TTTATTTTAACAAGATGAGACTTTCTTAAAGAAATGGCTGCCTTTATACAATTATAAACAGCTTACAATAATA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80898357 571 + 112612857 AAATTT------AGACTTTATT--TTTAACCTTCTGGTGTTTTAGTTTAGAAATAACTTTGGCTCCTAGGAGGGGTCAAAATTCAAGGTGCTTTAACATAGACAAAGGAAAGC-----------------------------------TGTGGGTTAGA-GGAAAATGTAGCATAATGCATAAGACActtggctgtgggttcactggcacttatggcattacagtttgagctagttatgta------acctttctgagccttacttttctttcatgtgtaaaatgggtataccaggagtatacccatatatccatagtatatggtaaagaccaaagaca----atgcatcatataaagttc----------------ttagcatagttcccacacatatcatt-----tattaaatctagctGA--------GCAGAGAGAGAA--------------------AGACTAATGAATGTTTTTTTCTTAGTCCTGATCCTCATAAGGTTTTATAGACAACATCTCTTTAATACATGGATAATTCTATA----CCCTGA--------------TTTTTGCTGTGAACT--TCTTTAAACTAAAAATCAGGTCAGAGTTAAATC------TTTATTTTAACAAGATGAGACTTTCTTAAAGAAATGGCTGCCTTTATACAATTATAAACAGCTTACAATAATA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76947801 571 + 107442819 aaattt------agactttatt--tttaaccttCAGGTGTTTTAGTTTAGAAATAACTTTGGCTCCTAGGAGGGGTCAAAATTCAAGGTGCTTTAACATAGACAAAGGAAAGC-----------------------------------TGTGGGTTAGA-GGAAAATGTAGCATAATGCATAAGACACTTGGCTGTGGGTTCACTGGCACTTATGGCTTTACAGTTTGAGCTGGTTAtgta------acctttctgagccttacttttctttcatgtgtaaaatgggtaTACCAGGAGTATACCCATATATCCATAGTATATGGTAAAGACCAAAGACA----ATGCATCATATAAAGTTC----------------TTAGCATAGTTCCCACACATATCATT-----TATTAAATCTAGctga--------gcagagagagaa--------------------agactaatgaatgtttttttcttagtcCTGATCCTCATAAGGTTTTATAGACAACATCTCTTTAATACATGGATAATTCTATA----CCCTGA--------------TTTTTGCTGTGAACT--TCTTTAAACTAAAAATCAGGTCAGagttaaatc------tttattttaacaagatgagattttcttaaagaaatggcTGCTTTTATACAATTATAAACAGCTTAcaataata i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81212278 571 + 108555830 AAATTT------AGACTTTATT--TTTAACCTTCTGGTGTTTTAGTTTAGAAATAACTTTGACTCCTAGGAGGGGTCAAAATTCAAGGTGCTTTAACATAGACAAAGGAAAGC-----------------------------------TGTGGGTTACA-GGAAAATGTAGCATAATGCATAAGACActtggctgtgggttcactggcacttatggcattacagtttgagctagttatgta------acctttctgagccttacttttctttcatgtgtaaaatgggtataccaggagtatacccatatatccatagtatatggtaaagaccaaagaca----atgcatcatataaagttc----------------ttagcatagtacccacacaTATCATT-----TATTAAATCTAGCTGA--------GCAGAGAGAGAA--------------------AGACTAATGAATGTTTTTTTCTTAGTCCTGATCCTCATAAGGTTTTATAGACAACATATCTTTAATACATGCATAATTCTATA----CCCTGA--------------TTTTTGCTGTGAACT--TCTTTAAACTAAAAATCAGGTCAGAGTTAAACC------TTTATTTTAACAAGATGAGACTTTCTTAAAGAAATGGCTGCTTTTATACAATTATAAACAGCTTACAATAATA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111447114 561 - 210400635 AAATTT------GGACTTTATT--TTTAACCTTCTGGTGTTCTAGTTTAGAAGTAACTTTGACTCCTAGGAGGGGTCAAAATTCAAGGTGCTTTACTGTAGACAAAGGAAAGC-----------------------------------TGTGGGTTAGA-GGAAAACGAAGCATAACGCGTAAGACACTTGGCTGTGGGTTctctggcacttatggcgttatagtttgagctagttatgta------accttcctgagtcttacttttatttcacgtgtaaagcaggtatactaggagtatacccatatatccatagcatatggtaaagatcaaatgtg----atacatcatataaagttc----------------ttagcatagtacccatacaTATCATT-----TGTTAAACTTAGCTGA--------------AAAGAG--------------------AGACGAATGAATG-TTTTTTCTTAGTCCTGATCCTCATAAGGTTTTATAGACAATATCTCTTTAATACATTGATAATTATATA----TCCTGA--------------TTTTTCCTGTGAAGT--TCTTTAAAGTAAAAATCAGGTCAGAGTTAAGCC------TTTATTTTAATAAGATGAGGCGTTCTTAAAGAAATGGCTGCTTTTATTCAATTATAAACAGCtt---ataata i calJac3.chr1 C 0 C 0 s mm10.chr19 38085624 561 - 61431566 AAATCC-----AAGGCTTTATTAAACTGATTCTCCAGTGGTATATTGTAGACATAAGTTTAGCTCCTAGAGGGGATCAGAATGCAAGGTGGTTCACCACATAGACCGAAGAGC-----------------------------------AGTGAGTTAGAGGGGAGATGCAGCACAC----GATGGtgcttggctctgggtcctctgtcactcatggcttcata-ctcgaggtagttatgtgacagttacctgtgtaatcttcacttttcactcatgt---aaaaggggaacctggtagca------------cttactgcat----------aaagtcgttctgtgtatcacatgaAATTG------GGTGAAGTATGTAGTCTGTCTGCTA-GCACGTAATTAATACTATTAAGTTCAGCTCAACACAGACACAGAGGAAGAA--------------------AGAACAAAGGCTGTTTTTCT-------------------AGGTC------ACAACATTTATTTAGTGCACAGATAATTCTATA----TCTTGATTTTTTTTTTTTTTTTTTTGCTGTGAGGT---------GTTGAAAATGAGGTCAGAGTTAAATCTTTTTTTTTTTTTTAGCAATATTAGATCTTCTTCGATTAATGGAAGATGTGA-ACAACCACA---AGCCTATAATAATA i mm10.chr19 I 3 I 867 s canFam3.chr1 35330721 581 - 122678785 aaaTTTTTTTGAGAGCTTTATC--ATTAATGCCCAGTAGTTCTATTTTAGAAATAACTTTGGCTTCTACAAGGGATCGGAATCTATGGTGGGCCACCACAGACAAAGGAGGGCTTTGGGGTAGAGGGAAATACAGAGTAATGCTTAAGAGTTCTCGTGA-----------------------------------GTGGGTTctctgccacttacaccttcataatttgggctaatcatgtg------atcttgctgagcctcacttttc-ttcatatgtaaaatgggtatacgagtagta----cttacctcaaaggattatggtggagaacaaatgaa----atgtgtcaagtaaagccc----------------ttagcacag-------------CATG-----TATTAAAT-TAACTGA--------ACAGAGACAGAAGGAGAGAGAGAGAATGCCTGAGACTAAAGAATA-TTTTTTCTATGTCCTGATCCTCATCAGATTTCATAGGCAGCACCTCTACAGTATGTGGACAATTCTGCATAATTCTTGA--------------TTTTTGCTGTGCAGTATTCTTTAAGCTAAAAATAAAGTCAGGATTAAGTC------TTTATTTTAATAGTACTAAGCTTTCTTAATGACACGGCTGTGTTTA--CAGTCATGAACAGCTTATAATAAA- i canFam3.chr1 I 214 C 0 a score=325112.000000 s hg38.chr9_GL383541v1_alt 129024 96 + 171286 AAACTTTATTTAATGTTTTAAGAAACGTTTTGAAAAAGGATGAATCATGAAATGGTCCTCTGGATCTGTTTTTCCT-----CTTTATGAAATAGAGAGCAG s panTro4.chr9 68694524 96 + 137840987 AAACTTTATTTAATGTTTTAAGAAACGTTTTGAAAAAGGATGAATCATGAAATGGTCCTCTGGATCTGTTTTTCCT-----CTTTATGAAATAGAGAGCAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64849729 92 + 135191526 AAAC----TTTAATGTTTTAAGAAACATTTTGAAAAAGGATGAATCATGAAATGGTCCTCTGGATCTGTTTTTCCT-----CTTTATGAAATAGAGATCAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57889506 92 - 122973662 AAAC----TTTAATGTTTTAAGAAACATTTTGAAAAAGGATGAATCACAAAATGGTCCTCTGGATCTGTTTTTCCT-----CTTTGTGAAATAGAGAGCAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79819017 96 + 112192347 AAACTGTATTTAATGTTTTAAGAAACATTTTGAAAAAGGATGAATCATGAAATGGTCCTCTGGATCTGTTTTTCCT-----CTTTATGAAATAGAGAGCAG i rheMac3.chr15 C 0 M 137 s macFas5.chr15 80898928 96 + 112612857 AAACTGTATTTAATGTTTTAAGAAACATTTTGAAAAAGGATGAATCATGAAATGGTCCTCTGGATCTGTTTTTCCT-----CTTTATGAAATAGAGAGCAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76948372 96 + 107442819 aaactgtatttaatgttttaagaaacattttgaaaaaggatGAATCATGAAATGGTCCTCTGGATCTGTTTTTCCT-----CTTTATGAAATAGAGAGCAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81212849 96 + 108555830 AAACTTTATTTAATGTTTTAAGAAACATTTTGAAAAAGGATGAATCATGAAATGGTCCTCTGGATCTGTTTTTCCT-----CTTTATGAAATAGAGAGCAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111447675 96 - 210400635 aaatttttttaaatGTTTTAAGAAACACTTTGAAAAGGGATGAATCACAAAATGGTCCTCTGGATCTGTGTTTCCT-----CTTTATGAAGTAGAGAGCAA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35331302 94 - 122678785 -----TTTTTTAATGTCTT-TGAAACATTTTG-AAAGGCATGAGTCATGAAATGGTTTTCTTGATCGGTTTTTCCCCAGCACATTACTAAATGGAGGGCAG i canFam3.chr1 C 0 C 0 e mm10.chr19 38086185 867 - 61431566 I a score=1516.000000 s hg38.chr9_GL383541v1_alt 129120 17 + 171286 GTAATCAACAGTTACAT s panTro4.chr9 68694620 17 + 137840987 GTAATCAACAGTTACAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64849821 17 + 135191526 GTAATCAACAGTTACAC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57889598 16 - 122973662 GTAAT-AACAGTTATCT i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80899024 2 + 112612857 ----------GT----- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76948468 2 + 107442819 ----------GT----- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81212945 2 + 108555830 ----------GT----- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111447771 17 - 210400635 GTAATCAACAGTTATCT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35331396 17 - 122678785 GTTATCAAGAGTCCCCT i canFam3.chr1 C 0 C 0 e mm10.chr19 38086185 867 - 61431566 I e rheMac3.chr15 79819113 137 + 112192347 M a score=63751.000000 s hg38.chr9_GL383541v1_alt 129137 17 + 171286 TGAGACTTTCACACATT s panTro4.chr9 68694637 17 + 137840987 TGAGACTTTCACACATT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64849838 17 + 135191526 TGAGACTTTCACACATT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57889614 17 - 122973662 TGAGACTTTCACACATT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79819254 17 + 112192347 TGAGACTTTCACACATT i rheMac3.chr15 M 137 C 0 s macFas5.chr15 80899026 16 + 112612857 -GAGACTTTCACACATT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76948470 16 + 107442819 -GAGACTTTCACACATT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81212947 16 + 108555830 -GAGACTTTCACACATT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111447788 17 - 210400635 TGAGACTTTCATACATT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35331413 17 - 122678785 TGAGACCTTTATACACT i canFam3.chr1 C 0 C 0 e mm10.chr19 38086185 867 - 61431566 I a score=1566950.000000 s hg38.chr9_GL383541v1_alt 129154 422 + 171286 AAGGAGGATAATGAGGAGAGAG------AACAAttcagtccaaaacacttttcctaaaggccaaatattaggaaagactagagagtGATTGTCAGAAATTCCATAACAATGG-A-CACAAACATTAGCCCTTATATATTCAAATCCTTAGTTTATCTTTATGCTTGGTCACCCATGGTAGCATACATATTAGATCCTGCAACGCCTTCTGGCCTGAAGCTAGCCTTTCCTTTAACAAAGATCGTTCAGTGGTCTGTTAATTAGAAGCACT-------GGGAGGAACTCGATATTGTGTTCATTAAATATTTCTTTTGG--AGAAAAATCGTTAAACAGTCCATAAATGAAA--ATGACTAAAGGCATTCCATTTCACTGGGATCAGGCTTAATAATCAGCCCAGCAGTCATTAAAATCTTCATGGTAAATCCTTTTAAGTC s panTro4.chr9 68694654 422 + 137840987 AAGGAGGATAATGAGGAGAGAG------AACAATTCAGTCCAAAACACTTTTCCTAAAGGCCAAATATTAGGAAAGACTAGAGAGTGAGTGTCAGAAATTCCATAACAATGG-A-CACAAACATTAGCCCTTATATATTCAAATCCTTAGTTTATCTTTATGCTTGGTCACCCATGGTAGCATACATATTAGATCCTGCAACGCCTTCTGGCCTGAAGCTAGCCTTTCCTTTAACAAAGATCGTTCAGTGGTCTGTTAATTAGAAGCACT-------GGGAGGAACTCGATGTTGAGTTCATTAAATATTTCTTTTGG--AGAAAAATCGTTAAACAGTCCATAAATGAAA--ATGACTAAAGGCATTCCATTTCACTGGGATCAGGCTTAATAATCAGCCCAGCAGTCATTAAAATCTTCATGGTAAATCCTTTTAAGTC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64849855 422 + 135191526 AAGGAGGATAATGAGGAGAGAG------AACAATTCAGTCCAAAACACTTTTCCTAAAGGCCAAATATTAGGAAAGACTACAGAGTGATTGTCAGAAATTCCATAACAATGG-A-CACAAACATTAGCCCTTATATATTCAAATCCTTAGTTTATCTTTATGCTTGGTCACCCATGGTAGCATACATATTAGATCCTGCAACGCCTTCTGGCCTGAAGCTAGCCTTTCCTTTAACAAAGATCGTTCAGTGGTCTGTTAATTAGAAGCACT-------GGGAGGAACTCAATATTGTGTTCATTAAATATTTCTTTTGG--AGAAAAATCGTTAAACAGTCCATAAATGAAA--ATAACTAAAGGCATTCCATTTCACTGGGATCAGGCTTAATAATCAGCCCAGCAGTCATTAAAATCTTCATGGTAAATCCTTTTAAGTC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57889631 422 - 122973662 AAGGAGGATAATGAGGAAAGAG------AACAATTCAGTCCAAAACACTTTTCCTAAAGTCCAAATATTAGGAAAGACTGGAGAGTGATTGTCACAAATTCCATAACAATGG-A-CGCAAACATTAGCCCTTATATATTCAAATCCTTAGTTTATCTTTATGCTTGGTCACCCATGGTAGCATACATATTAGATCCTGCAATGCCTTCTGGCCTGAAGCTGGCCTTTCCTTTAACAAAGATCATTCAGTGTTCTGTTAATTAGAAGCACT-------GGGAGGAAATCGATATTGTGTTCATTAAATATTTCTTTTGG--AGAAAAATCGTTAAACAGTCCATAAATGAAA--ATAACTAAAGGCATTCCATTTCACTGGGATCAGGCTTAATAATCAGCCCAGCAGTCATTAAAATCTTCATGGTAAATCCTTTTAAGTC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79819271 422 + 112192347 AAGGAGGATAATGAGGAGAGAG------AACAATTCAGTCCAAAACACTTTTCCTAAAGGCCAAATATTAGGAAAGACTAGAGAGTGATCGTCAGAAATTCCATAACAATGG-A-CGCAAACATTAGCCCTTATATATTCAAATCCTTAGTTTATCTTTACGCTTGGTCACCCATGGTAGCATACATATTAGATCCTGCAATGCCTTCTGGCCTGAAGCTAGCCTTTCCTTTAACAAAGATCTTTCAGTGGTCTGTTAATTAGAAGCACT-------GAGAGGAATGTGATATTGTATTCATTAAATATTTCTTTTGG--AGAAAAACTGTTAAACAGTCCAAAAATGAAA--ATGACTAAAGGTATTCCATTTCACTGGGATCAGGCTTAATAATCAGCCCAGCAGTCATTAAAATCTTCATGGTAAATCCTTTTAAGTC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80899042 422 + 112612857 AAGGAGGATAATGAGGAGAGAG------AACAATTCAGTCCAAAACACTTTTCCTAAAGGCCAAATATTAGGAAAGACTAGAGAGTGATCGTCAGAAATTCCATAACAATGG-A-CGCAAACATTAGCCCTTATATATTCAAATCCTTAGTTTATCTTTACGCTTGGTCACCCATGGTAGCATACATATTAGATCCTGCAATGCCTTCTGGCCTGAAGCTAGCCTTTCCTTTAACAAAGATCTTTCAGTGGTCTGTTAATTAGAAGCACT-------GAGAGGAATGTGATATTGTATTCATTAAATATTTCTTTTGG--AGAAAAACTGTTAAACAGTCCAAAAATGAAA--ATGACTAAAGGTATTCCATTTCACTGGGATCAGGCTTAATAATCAGCCCAGCAGTCATTAAAATCTTCATGGTAAATCCTTTTAAGTC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76948486 422 + 107442819 AAGGAGGATAATGAGGAGAGAG------AACAATTCAGTCCAAAACACTTTTCCTAAAGGCCAAATATTAGGAAAGACTAGAGAGTGATCGTCAGAAATTCCATAACAATGG-A-TGCAAACATTAGCCCTTATATATTCAAATCCTTAGTTTATCTTTACGCTTGGTCACCCATGGTAGCATACATATTAGATCCTGCAATGCCTTCTGGCCTGAAGCTAGCCTTTCCTTTAACAAAGATCTTTCAGTGGTCTGTTAATTAGAAGCACT-------GAGAGGAATGTGATAttgtattcattaaatatttcttttgg--agaaaaactGTTAAAGAgtccaaaaatgaaa--atgactaaaGGTATTCCATTTCACTGGGATCAGGCTTAATAATCAGCCCAGCAGTCATTAAAATCTTCATGGTAAATCCTTTTAAGTC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81212963 422 + 108555830 AAGGAGGATAATGAGGAGAGAG------AACAATTCAGTCCAAAACACTTTTCCTAAAGGCCAAATATTAGGAAAGACTAGAGAGTGATGGTCAGAAATTCCATAACAATGG-A-CGCAAACATTAGCCCTTATATATTCAAATCCTTAGTTTATCTTTATGCTTGGTCACCCATGGCAGCATACATATTAGATCCTGCAATGTCTTCTGGCCTGAAGCTAGCCTTTCCTTTAACAAAGATCGTTCAGTGGTCTGTTAATTAGAAGCACT-------GAGAGGAACGTGATATTGTATTCATTAAATATTTCTTTTGG--AGAAAAATTGTTAAACAGTCCAAAAATGAAA--ATGACTAAAGGTATTCCATTTCACTGGGATCAGGCTTAATAATCAGCCCAGCAGTCATTAAAATCTTCATGGTAAATCCTTTTAAGTC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111447805 409 - 210400635 AAGGAGGATAATGAGGTGAGAG------AACAATGCATTCCAAAACTCTTTTCCTAAAGGCCAAATATTAGGAGAGAGTGGAGAGCGATTATCAGAAATTTCATAACAATGG-A-CACAAACATTAGCCCTTATATATTCACACCCTTAGTTCCTCTTCATGCTTGGTCACACATGGTAGTATACATATTAGATCCTGCAATGCCTTCTGGCCCGAAGCTAGCCTTTCCTTTAACAAAGATTGCTCAGTGGTCTGTTAATTAGAAGCACT-------GGGAGGACCTCGAGATTGTATTCATTAAATATTTCTTTTGG--AGAAAGACTGTTAAACAGTCCATAAATGAAA--ATGACTAAAGGCATTCCTTTTCACTGGGCTCAGG-------------ACAGCAGTCATTAAAATCTTTGAGGTAAATCCTTTTAAGTC i calJac3.chr1 C 0 C 0 s mm10.chr19 38087052 413 - 61431566 aaagaaggaaggaaggagagagaggggAAACAGTTTTCTCTCAGATGCTTTTATTCAAAGCAAAACTGTGGGAAAGACACCAGAATGAG-ATCAGATATTCCATAATGATGACA-CTTAAGCATTAGCCTTCCAGCCTTCAAATGCTACACTT-TACAGATGTTTGGTC---CAT-GTACCGTGGAGGTTAGGTCCTG-AGTAATTTCTTGCCTA---------TGACCTCTAGCAAAGATGCTTCAATAGACATTTAATTATAAGCACTGAGGTTGGGGACAGACTCTGTATTTTGTTAACTAAGTACTTA-TTTGA--GCAGAAAGCATTAAGTGGTCAGTAACTGAGAGGATGGC--AAGGCAGTCTGTGTCTTCCAGGACTGGGCGGATGATCAGTTCAGCAATCGTTAA------CATAGCAAACCATTCTAATTC i mm10.chr19 I 867 I 905 s canFam3.chr1 35331430 404 - 122678785 AGGGACATTAGTAAGGAGAGAG------AACAATTCACTCCAAAATGCTTTCCCTAAAAACCAAATGTCAGGAGAAACTG--GAGTCATTATCAGAAATTCCATAAAGAGAG-AGCACAGACATTAGCCTTTGTGTGTTCAAATCCTTAGTTTAAAATTATTCTTGGT----CATTATAGCATATATATTAGGTCCTGCAATATTTCCTGGCCTGAAGCTAGTTTTCTCTTTAACAAAGATCTTCAAATGGTCTGTTAATTAGAAGCACT-------GGGAGCAACTCAAGATTGTGTTGGTTAAATATTTCCTTTGGAAAAAAAAATTGTTAACTGGTCCATTAATGAGAGAATGACC--AGCCATTCTGTTTCATCTGAGCTCAGCTTAATGA------------TCTTTGGG---TTAATGGTCAAACCTTCTGAGTC i canFam3.chr1 C 0 C 0 a score=51017.000000 s hg38.chr9_GL383541v1_alt 129576 19 + 171286 TGCATCTTTACTCTGTCAT s panTro4.chr9 68695076 19 + 137840987 TGTATCTTTACTCTGTCAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64850277 19 + 135191526 TGTATATTTACTCTGTCAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57890053 19 - 122973662 TGTATCTTTACTGTGTCAC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79819693 17 + 112192347 TGTATCTTTA--CTGTCAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80899464 17 + 112612857 TGTATCTTTA--CTGTCAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76948908 19 + 107442819 TGTATCTTTACTCTGTCAt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81213385 19 + 108555830 TGTATCTTTACTCTGTCAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111448214 19 - 210400635 TGCATTTTTACTCTGTCAT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35331834 11 - 122678785 --------TACTCTGCTAT i canFam3.chr1 C 0 C 0 e mm10.chr19 38087465 905 - 61431566 I a score=1925332.000000 s hg38.chr9_GL383541v1_alt 129595 614 + 171286 AGGACTG---AAAAAAAAAACTTCAA-AGTCATTTATGTATTTGGGAGAAAGCCCCCATCCAACCAGTTTTTAAAAATATAAATACATAT--TTTTTTTTCACTAGGTGA-------------------GAATCTTGTGTcagcccttctcatcttatgtctcgtggagcacaaatgccttgagatattccattgaaaaagagttctgttgtcagatgagtttgcagaacttggcagactggatctctactccacacaca--tgaagattcacaaagcacagtgacatattagaaactctcagtaaggttgacattaaagaatccagtttaaccttgttaaagggtggcaattttctcaaagcaattaacctagaacccttgtcttgtatagcacctatcaccatca------tactactctcatagcacttaatgcattatgttgaaattg------tacttacctgtctcgtta----aatcaga-tgtaagcttctggagaatacggctcca--tgtt-----tt-----ttgt-------tttgttttgttcttttaattcctaacatcaaggcaatttctggaacagagtgggttctcCTGTTAGTAACCCACTAAATAGTTAAGACAGAAAACTATACTATCAATGAATAGGTGTTGATGGTAAGGAAG---AA s panTro4.chr9 68695095 614 + 137840987 AGGACTG---AAAAAAAAAACTTCAA-AGTCATTTATGTATTTGGGAGAAAGCCCCCATCCAACCAGtttttaaaaatataaatacatat--ttttttttCACTAGGTGA-------------------GAATCTTGTGTcagcccttctcatcttatgtctcatggagcacaaatgccttgagatattccattgaaaaagagttctgttgtcagatgagtttgcagaacttggcagactggatctctactccacacaca--tgaagattcacaaagcacagtgacatattagaaactctcagtaaggtcgacattaaagaatccagtttaaccttgttaaagggtggcaattttctcaaagcaattaacctagaacccttgtcttgtatagcacctatcaccatca------tactactctcatagcacttaatgcattatgttgaaattg------tacttacctgtctcgtta----aatcaga-tgtaagcttctggagaatacggctcca--tgtt-----tt-----ttgt-------tttgttttgtttttttaattcctaacatcaaggcaatttctggaacagagtgggttctcCTGTTAGTAACCCACTAAATAGTTAAGACAGAAAACTATACTATCAATGAATAGGTGTTGATGGTAAGGAAG---AA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64850296 615 + 135191526 AGGACTG-AAAAAAAAAAAACTTCAA-AGTCATTTATGTA-TTGGGAGAAAGCCCCCATCCAACCAGtttttaaaaatataaatacata---ttttttttCACTAGGTGA-------------------GAATCTTGTGTCAGCCCTTCTCATCTTATGTCTCATGGAGCACAAATGCCTTGAGATATTCCATTGAAAAAGagttctgttgtcagatgagtttgcggaacttggcagactggatgtctactctacacaca--tgaagattcacaaagcacagtgacatattagaaactctcaataaggtctacattaaagaatccagtttaaccttgttAAAGGGTGGCAATTTTCTCAAAGCAATTAACCTAGAAcccttgtcttgtatagcacttatcaccatca------tactactctcatagcacttaatgcattatgttgaaattg------tacttacctatctcctta----aatcag-----aagcttctggagaataCAGCTTCA--TGTTttttgtt-----ttgt-------tttgttttgttttTTTAATTCCTAACGTCAAGGCAATTTCTGGAACAGAGTGGGTTCTCCTGTTAGTAACCCACTAAATAGTTAAGACAGAAAACTGTACTATCAATGAATAGGTGTTGATGGTAAGGAAG---AA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57890072 623 - 122973662 AGGACTG-AAAAAAATAAAACTTCAA-AGTCATTTACGTATTTGGGAGAAAGTCCCCATCCAACCAGTTTTTAAAAATATAAATACATAT--TTTTTTTTCACTAGGTGA-------------------GAATCTTGTGTcagcccttctcatcttatgtctcatggagcacaaatcccttgagatattctattgaaatagagttctgttgtcagatgagttcgcggaacttggcagactggatctctactccacacaca--tgaagattcacaaagcacagtaacatattagaaactctcgataaggtctacattaaagaatccagtttaactttgttAAAGGGTGACAATTTTctcaaagcaattaacctagaatccttgtcttgtatagcacatatcaccatca------tactactttcatagcacttaaagcattatgttgaaattg----tctacttacctatctcctta----aatcaga-tgtaagcttctggagaatacggctcca--tgtt-----tt-----ttgtttgtttgtttgttttgtttttt--attcctaatgttgaggcaatttctggaacagagtgggttctcCTGTTAGTAACCCACTAAATAGTTAAGACAGAAAACTATACTATCAATGAATAGGTGTTGATGGTAAGGAAG---AA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79819710 606 + 112192347 AGGACT---AAAAAAAAAAACTTCAAAAGTCCTTTACGTATTTGAGAGAAAGCCCCCATCCAACCAGTTTTTAAAAATATAAATACATAC-TTTTTTTTTCACTAGGTGA-------------------GAATCTTGTGTcagcccttctcatcttctgtcccatggagcacaaatcccttgagatatttcattgaaaaagagttctgttgtcagatgagtttgcagaacttggcagactggatctctactccacacac----gaagattcacaaagcacagtaacatattagaaactctcaataaggtctacattaaagaatccagtttaaccttgttaaagggtggcagttatatcaaagcaattaacctagaacctttgtctcgtatagcacctatcaccatca------tactactctcatagcacttaatgcattatgttgaaattg----tctacttacctatctcctt---------aga-tgtaagcttctggagaatacggctccatttttt-----tt----------------ttttttttttttccttaattcctCATGTCAATGCAATTTCTGGAACAGAGTGGGTTCTCCTGTTAGTAACCCAAT-AATAGTTAAGACAGAAAACTGTACTATGAATGAATAGGTGTTGATGGTAAGGAAG----- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80899481 605 + 112612857 AGGACT--AAAAAAAAAAAACTTCAAAAGTCCTTTACGTATTTGAGAGAAAGCCCCCATCCAACCAGTTTTTAAAAATATAAATACATAC-TTTTTTTTTCACTAGGTGA-------------------GAATCTTGTGTcagcccttctcatcttctgtcccatggagcacaaatcccttgagatatttcattgaaaaagagttctgttgtcagatgagtttgcagaacttggcagactggatctctactccacacac----gaagattcacaaagcacagtaacatattagaaactctcaataaggtctacattaaagaatccagtttaaccttgttAAAGGGTGGCAGTTATATCAAAGCAATTAACCTAGAAcctttgtctcgtatagcacctatcaccatca------tactactctcatagcacttaatgcattatgttgaaattg----tctacttacctatctcctt---------aga-tgtaagcttctggagaatacggctcca--tgtt-----tt----------------ttttttttttttccttaattcctcatgtcaatgcaatttctggaacagagtgggttctcCTGTTAGTAACCCAAT-AATAGTTAAGACAGAAAACTGTACTATGAATGAATAGGTGTTGATGGTAAGGAAG----- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76948927 604 + 107442819 aggact--aaaaaaaaaaaacttcaaaagtccTTTACGTATTTGAGAGAAAGCCCCCATccaaccagtttttaaaaatataaatacatac-tttttttttcactagGTGA-------------------GAATCTTGTGTCAGCCCTTCTCATCTTCTGTCCCATGGAGCACAAATCCCTTGAGATATTTCATTGAAAAAGAGTTCTGTTGTCAGATGAGTTTGCAGAACTTGGCAGACTGGATCTCTACTCCACACAC----GAAGATTCACAAAGCACAGTAACATATTAGAAACTCTCAATAAGGTCTACATTAAAGAATCCAGTTTAACCTTGTTAAAGGGTGGCAGTTATATCAAAGCAATTAACCTAGAATCTTTGTCTTGTATAGCACCTATCACCATCA------TACTACTCTCATAGCACTTAATGCATTATGTTGAAATTG----TCTACTTACCTATCTCCTT---------AGA-TGTAAGCTTCTGGAGAATAcggctcca-----t-----tt----------------tttttttttttttcttaattcctcATGTCAATGCAATTTCTGGAACAGAGTGGGTTCTCCTGTTAGTAACCCAAT-AATAGTTAAGACAGAAAACTGTACTATGAATGAATAGGTGTTGATGGTAAGGAAG---AA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81213404 604 + 108555830 AGGACTA-AAAAAAAAAAAACTTCAATAGTCATTTACATATTTGAGAGAAAGCCCCCATCTAACCAGTTTTTAAAAATATAAATACATAC--TTTTTTTTCACTAGGTGA-------------------GAATCTTGTGTcagcccttctcatcttctgtcccatggagcacaaatcccttgagatatttcacggaaaaagagttctgttgtcagatgagtttgcagaacttggcagactggatctctactccacacac----gaagattcacaaagcacagtaacatattagaaactctcaataaggtctacattaaagaatccagtttaaccttgttaaagggtggcagttatatcaaagcaattaacctagaacctttgtcttgtatagcacctatcaccatca------tactactctcatagcacttaatgcattatgttgaaattg----tctacttacctatctcctt---------aga-tgtaagcttctggagaatacggctcca-----------tt----------------tttttttttttttcttaattcctaATGTCAATGCAATTTCTGGAACAGAATGGGTTCTCCTGTTAGTAACGCACTAAATAGTTAAGACAGAAAACTGTACTATGAATGAATAGGTGTTGATGGTAAGGAAG---AA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111448233 622 - 210400635 AGGCCT----AAAAAACAAACTTCAGAAGTCATTTACGTATTTAGGAGAAAGTACCCATCCAAGCAGTTTTTAAAACTATAAATACATACACTTTTTGTTCACTAGGTGA-------------------AAATC-TGTGTcagtccttctcatgttatgtcccatggagcacaaatcccttgagatattccattgaaaaagggttctgtcatcagatgagtttgtagaacttggcagactggatctctactccacacaca--tgaagattcacaaagcacactaacatattagaaactctcagtaagatctgcattaaagaatccagtttaaccttgttaaaaggtagcaattttctcaaagcagttaaccgagaacacttgttttgtatagcacctatcagcatca------tactactctcatggcacttaatgtatttagtt-aaattg----tctacttacctgtctcctta----aatcaga-tgtaagcttctggagaatacggCTCCA--TATT-----GTTGTGtttgt-------tttgttttgttttgtt-ATTCCTGATATCAATGAAATTTCTGGAACAAAGTGGGTTCTCCTGTTAGTAATCCA-TAAATAATTAAGACAGAAAACTGAACTATCAATGAATAGGTGTTGATGGTAAGGAAGAATAA i calJac3.chr1 C 0 C 0 s mm10.chr19 38088370 534 - 61431566 --------aagaaagaaaga----aaAAGCTA--CACTCATTTAAGAGAACGCCCCCATCCAACC---------AAATATAAATA-------CTTTTCCCTACTAGGTTAAAAGACCAAAACAAAAGTTAAACTGTGTGTCAGCCCTTCTTGGC-CATGCACCATGAAGTACAACACATTAGATCTGTTCCAATGAACAAGCGTTCTGTGGT-AGATGAGTTTGT-----TTGGAGGAATAG---------------------------------------GTAACATATTAGAAACTCTTGCTATTGTCC-CACTAAAGAGTCCTGTTTCACTGTATTTAAAGG-AATGACTCCCTCAAAGCAGGTGACCTGGAGCCTTAACATTGTGTAGCTCCCATTACTGCTG------TAC-ATTGTAATACCATGTAACCCACT-TACTAGAACTACGGACTTAGTTGTCTGTCTGCTTA----GACAAGGCCATGAACTTCTGGAGATTAGGGAGCTG--AATC-----TC-----ACAA-------TTTTT------------ATTTCTGATGCTGACACAATCTCTGGGAGAGAATAGGTTTGC-----------------AGTAGGTAGAAGGGGAAGCTG-----CCAGTGAATGTTTGTTAACAGCAAGGCGG---AA i mm10.chr19 I 905 I 2617 s canFam3.chr1 35331845 570 - 122678785 AAAATTAAAAAACAAATAAACTTTAAAAGTCACTTAAGGATTTG-GAGAGAACCCCTATCTGGCCAGTCTGAGAAAATATAAATACATT---TAATTTTTTACTTCACAA-------------------GAAACTTATGTCAGCACTTCTCAGGATAT-CCCCAT--AGTACAAATCATTTGAG-TAGTTCATtgaaaaaatgttctgtggt------------ggaaattttgcacactagctctcttccttgtacacatgtgaagattcacaatgagcagtaacgtattagaaactct-ggtaaatcctacactaaagaaccctgctgaacttcatataagg--aggaattcctttagggtgtttaacgtagaattcttgtcttctgttgcccctcttagcatcATTATACTACTACTATCATAGCAT------------------atta----tctacttacctgcctgtctatattaatcagaccgtaagtttctagagaacagagagcct--tgtc-----tc--------a-------tttgt------ttctaaatttctaatgtgaacataat-tctgtaacagggtgggt-------------actcaacaaatagttgGAAAGTGGAACTGAACTGTCAATGAATAGG-GTTGATGGCAAGGAAG---AG i canFam3.chr1 C 0 C 0 a score=507177.000000 s hg38.chr9_GL383541v1_alt 130209 168 + 171286 --CATAATTCCATCAAAGGAAAAAGGAAGATTAAATGTTTCTGCCTTTGGCTAAGATAAACTATAATCCCTTATAGCATAGCACCTGAGCAATTTGTCCTACA------------------------------------AGGAATTTTAGTGTGAATACTTAAAACCAGGAATACCTGGCTAGAGTGAATATTAAGACATTTATGG s panTro4.chr9 68695709 168 + 137840987 --CATAATTCCATCAAAGGAAAAAGGAAGATTAAATGTTTCTGCCTTTGGCTAAGATAAACTATAATCCCTTATAGCATAGCACCTGAGCAATTTGTCCCACA------------------------------------AGGAATTTTAGTGTCAATACTTAAAACCAGGAATACCTGGCTAGAGTGAATATTAAGACATTTATGG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64850911 168 + 135191526 --CATAATTCCATCAAAGGAAAAAAGAAGATTAAATGTTTCTGCCTTTGGATAAGATAAACTATAATCTCTTATAGCATAGCACCTGAGCAATTTGTCCTACA------------------------------------AGGAATTTTAGTGTGAATACTTAAAATCAGGAATATCTGGCTAGAGTGAATATTAGGACATTTATGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57890695 168 - 122973662 --CATAATTCCATCAAAGGAAAAAGGAAGATTAAATGTTTCTGCCTACGGATAAGATAAACTAGAATCCCTTACAGCATAGCACCTGAGCAATTTGTCCTACA------------------------------------AGGAATTTTAGTGTGAATACTTAAAGCCAGGAATACCTGGCTAGAGTGAATATTAGGACATTTATGG i nomLeu3.chr1a C 0 I 7 s rheMac3.chr15 79820316 171 + 112192347 -----AATTCCATCAAAGGAAAAAGGAAAATTAAATGTTTCTGCCTTTGGATAAGATAAACTGTAATCTCTT------------------------------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATTTTAGTGTGAATACTTAAAACCAGGACTACCTGGCTAGAGTGAATATTAGCACATTTATGG i rheMac3.chr15 C 0 I 7 s macFas5.chr15 80900086 165 + 112612857 -----AATTCCATCAAAGGAAAAAGGAAAATTAAATGTTTCTGCCTTTGGATAAGATAAACTGTAATCTCTTATAGCATAGCACCTGAGCAATTTGGCCTACA------------------------------------AGGGATTTTAGTGTGAATACTTAAAACCAGGACTACCTGGCTAGAGTGAATATTAGCACATTtatgg i macFas5.chr15 C 0 I 7 s papAnu2.chr15 76949531 168 + 107442819 --CATAATTCCatcaaaggaaaaaggaaaattaaatgtttCTGCCTTTGGATAAGATAAACTGTAATCTCTTACAGCATAGCACCTGAGCAATTTGGCCTACA------------------------------------AGGGATTTTAGTGTGAATACTTAAAACCAGGACTACCTGGCTAGAGTGAATATTAGCACATTTATGG i papAnu2.chr15 C 0 I 7 s chlSab2.chr12 81214008 168 + 108555830 --CATAATTCCATCAAAGGAAAAAGGAAGATTAAATGTTTCTGCCTTTGGATAAGATAAACTGTAATCTCTTATAGCATAGCACCTGAGCAATTTGACCTACA------------------------------------AGGGATTTTAGTGTGAATACTTAAAACCAGGACTACCTGGCTAGAGTGAATATTAGCACATTTATGG i chlSab2.chr12 C 0 I 64 s calJac3.chr1 111448855 168 - 210400635 --CATAATTCCATCAAAGAAAAAAGGAAGATTAAATGTTTCTGCCTTTAGATAAGATAAACCATAATCTCTTATAGCACAGCACCTGAGTAATTTGTCCTACA------------------------------------AGGAATTTTAGTGTGAATACTTAAAACCAGGAATGCCTGGCTAGAGTGGAAACTAGGACATTTATGG i calJac3.chr1 C 0 I 7 s canFam3.chr1 35332415 153 - 122678785 CACAGAGGTCC----AAGGAAGAAGCAAG-----AAGTTTCTGCCTTTGGATCACACAAACCATGATCACTTCTAGCCCAGCACCTGAGCCATCTGTCCTGCA------------------------------------AGGAA--TAGGAGTGACCACTTACAGGCAGGAGTTGCTTGCTTGAGTGGATATAAGGACAC------ i canFam3.chr1 C 0 C 0 e mm10.chr19 38088904 2617 - 61431566 I a score=17848.000000 s hg38.chr9_GL383541v1_alt 130377 34 + 171286 TATGCTGAGTCCGATTTGGAACA-----------------------------------Attttttttt--------t s panTro4.chr9 68695877 34 + 137840987 TATGCTGAGTCCGATTTGGAACA-----------------------------------Attttttttt--------t i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64851079 32 + 135191526 TATGCTGAGTCTGATTTGGAAC-------------------------------------ttttttttt--------t i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57890870 34 - 122973662 TATGCTGAGTCTGATTTGGAACG-----------------------------------tttttttttt--------t i nomLeu3.chr1a I 7 C 0 s rheMac3.chr15 79820494 63 + 112192347 TATGCTGAGTCTGATTTGGAgtgtgtgtgtgtgtgtg------tgtATATATATATATAttttttttt--------t i rheMac3.chr15 I 7 I 1 s macFas5.chr15 80900258 69 + 112612857 tatgctgagtctgatttggagtgtgtgtgtgtgtgtgtatacatatatatatatatatatatatattt--------t i macFas5.chr15 I 7 I 1 s papAnu2.chr15 76949706 71 + 107442819 TATGCTGAGTCTgatttggagtgtgtgtgtgtgtgtg------tgtatatatatatatatattttttttttttttct i papAnu2.chr15 I 7 I 1 s calJac3.chr1 111449030 26 - 210400635 TATGCTGAGTTTGATTTGGAGC------------------------------------Attt--------------- i calJac3.chr1 I 7 C 0 s canFam3.chr1 35332568 4 - 122678785 -----------------ACAA-------------------------------------------------------- i canFam3.chr1 C 0 C 0 e mm10.chr19 38088904 2617 - 61431566 I e chlSab2.chr12 81214176 64 + 108555830 I a score=31736.000000 s hg38.chr9_GL383541v1_alt 130411 16 + 171286 ttttttttttgagaca s panTro4.chr9 68695911 12 + 137840987 ttttttt----agaca i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64851111 16 + 135191526 ttttttttttgagaca i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57890904 12 - 122973662 ttttttg----agaca i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79820558 16 + 112192347 ttttttttcacagaca i rheMac3.chr15 I 1 C 0 s macFas5.chr15 80900328 16 + 112612857 ttttttttcacagaca i macFas5.chr15 I 1 C 0 s papAnu2.chr15 76949778 16 + 107442819 tttttttttccagaca i papAnu2.chr15 I 1 C 0 s chlSab2.chr12 81214240 16 + 108555830 tttttttttccagaca i chlSab2.chr12 I 64 C 0 s calJac3.chr1 111449056 16 - 210400635 ttttttttttgagaaa i calJac3.chr1 C 0 C 0 s canFam3.chr1 35332572 5 - 122678785 -----------AGACA i canFam3.chr1 C 0 C 0 e mm10.chr19 38088904 2617 - 61431566 I a score=417704.000000 s hg38.chr9_GL383541v1_alt 130427 140 + 171286 gggt----ctctgttgcccagg-----------------------ctggaatgcagtggcacgatcatggttcactgcagtctccacctcctgggctcaagcagtcctcccacctcagcttcccaagtagctggggtgcagagccagctaatttatttttcattttt s panTro4.chr9 68695923 140 + 137840987 gggt----ctctgttgcccagg-----------------------ttggaatgcagtggcacgatcatggttcactgcagtctccacctcctgggctcaagcagtcctcccacctcagcttcccaagtagctggggtgcagagccagctaatttatttttcattttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64851127 140 + 135191526 gggt----ctctgttgcccagg-----------------------ttggaatgcagtggcacgatcatggttcactgcagtctccacctcctgggctcaagcagtcctcccacctcagcttcccaagtagctggggtgcagagccagctaatttatttttcattttt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57890916 140 - 122973662 gggt----ttctgttgcccagg-----------------------ttggaatgcagtggcacaatcattgttcactgcagtctccacctcctgggctcaagcagtcctcccaccttagctttccaagtagctggggtgcagagccagctaatttatttttcattttt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79820574 163 + 112192347 gggt----ctctgttgctcaggttggagcatgtctcttgctcagattggagtgcagtggcacgatcatggttcactgcagcctccacctcctgggctcaagcagtcctcccacctcagcttcccaagtagcttaggtacagacccagctaatttatttttcattttt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80900344 163 + 112612857 gggt----ctctgttgctcaggttggagcatgtctcttgctcagattggagtgcagtggcacgatcatggttcactgcagcctccacctcctgggctcaagcagtcctcccacctcagcttcccaagtagcttaggtacagacccagctaatttatttttcattttt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76949794 163 + 107442819 gggt----ctctgttgctcaggttggagcaTGTCTGTTgctcagattggagtgcagtggcacgatcatggttcactgcagcctccacctcctgggctcaagcagtcctcccacctcagcttcccaagtagcttaggtacagacccagctaatttatttttcattttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81214256 163 + 108555830 gggt----ctctgttgctcaggttggagcatgtctgttgctcagattggagtgcagtggcacgatcatggttcactgcagcctccgcctcctgggctcaagcagtcctcccacctcagcttcccaagtagcttaagtacagacccagctaatttatttttcattttt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111449072 143 - 210400635 aggtctcactctgttgcccagg-----------------------gtgaaatgcagtggcatgatcatggttcactgcagcctccacctcctgggctcaaggaatcct-ccatcttagcttcccacgcagctggggtgtacccccagctaatttatttttcattttt i calJac3.chr1 C 0 C 0 e mm10.chr19 38088904 2617 - 61431566 I e canFam3.chr1 35332577 0 - 122678785 C a score=56623.000000 s hg38.chr9_GL383541v1_alt 130567 16 + 171286 tgcagagacagggtct s panTro4.chr9 68696063 16 + 137840987 tgcaaagacagggtct i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64851267 16 + 135191526 tgcagagacagggtct i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57891056 16 - 122973662 tgcagagacagggtct i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79820737 16 + 112192347 tgcagagacaggatct i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80900507 16 + 112612857 tgcagagacaggatct i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76949957 16 + 107442819 tgcagagacaggatcc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81214419 16 + 108555830 tgcagagacagggtct i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111449215 16 - 210400635 tgtagagacagggtct i calJac3.chr1 C 0 C 0 s canFam3.chr1 35332577 16 - 122678785 TGTAGATATGGAGTCT i canFam3.chr1 C 0 C 0 e mm10.chr19 38088904 2617 - 61431566 I a score=315341.000000 s hg38.chr9_GL383541v1_alt 130583 104 + 171286 cactaagtagctcgggctggtct-gaactcctggcctcaagctctc---ctcccacctcagcctcccaaagtgctgggattacaggcgtgagccaccgtgcttggcTT s panTro4.chr9 68696079 104 + 137840987 cactaagtagctcaggctggtat-gaactcctggcctcaagctctc---ctcccacctcagcctcccaaagtgctgggattacaggcgtgagccaccgtgcttggccT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64851283 104 + 135191526 cactcagtagctcaggctggtct-gaactcctggcctcaagctctc---ctcccacctcagcctcccaaagtgctgggattacaggcgtgagccaccatgcttggccT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57891072 105 - 122973662 cactaagtagctcaggctggtctcaaactcctggcctcaagttatt---cttccacctcagcctcccaaagtgctgggattacaggcgtgagccaccatgcttggccT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79820753 105 + 112192347 cactaaggagctcaggctggtctcaaactcctgacctcaagctgtc---ctcccacctcagcctcccaaagtgctgggattacaggcacgagccaccatgcttggccT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80900523 105 + 112612857 cactaaggagctcaggctggtctcaaactcctgacctcaagctgtc---ctcccacctcagcctcccaaagtgctgggattacaggcacgagccaccatgcttggccT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76949973 105 + 107442819 CACTAAGTagctcaggcaggtctcaaactcctgacctcaagctgtc---ctcccacctcagcctcccaaaatgctgggattacaggcacgagccaccatgcttggcct i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81214435 105 + 108555830 cactaagtagctcaggctggtctcaaactcctgacctcaagctgtc---ctcccacctcagcctcccaaagtgctgggattacaggcacgagccaccatgcttggccT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111449231 108 - 210400635 cactaagtagctcaggctggtctcaaactcctggcttcaagctgtcctactcctacctcagcctcccaaagtgctgggattacaggcatgaactaccatgcttggccT i calJac3.chr1 C 0 C 0 e mm10.chr19 38088904 2617 - 61431566 I e canFam3.chr1 35332593 0 - 122678785 C a score=10764149.000000 s hg38.chr9_GL383541v1_alt 130687 3110 + 171286 GTTTTGGAACTTTTTATGATGGTATTTACTAAAACCAAGAACTGTGATTCTTCCCTTTGAAACAGCTTCCCATTCTTAAACTGTGCC-TTTTCCTATTCCCAAGAACCTAAATCAAGTTTTACCAGCCCCCATGCAAATCCC--AATCCTTTCCCTGCCCCACAACACAGCTTATCCAGCCTCCATTCTGCGATCATGGTCAGTGATGTGGTTGCTTCCACGTCATACCCTCCCCACCTGCAGGTCTTCCTGGCTTCT-CCACCTTGGTCCTCCTAATGCCTGGAAACCCAGGGTAG---CTTTCATCT-TTACCCCAGTCT----TCTCAGCACAGCTGGAGAAAATA-------AGactaa-tctccactgtcccctccattctgctgggaaag----ccttttatgcatctcatctcttgttgactt--ttcctcatcccccatcc-cagatattcaggtctattttcactcgcaaatttccaacttgaccctccctgcctcattcttaggatgtgatctcatgggttcatctccc-aaaggataaaggcatccaacacaagctccttcagttctgttcctctctgaa---tcttcacctgcctctcttcatctcctgatcaatctgacaaagaaagtattatccttgctcttcgtcaaaaccaacctgcccatctaggcatttgatctcaccttcttgcctcctctgggaacttatttcataaattattccctctctcgtaaatcttcaatctccattagt-cctttgcatactgccaatatatgttagtctcctgcattcgacaccg-------------------------------------------atgaacaataaaccttcctttcatctcagtacccatttaagttgccaatccctcccattccttcagcctccaaacttctggaaagatgtatcttcaattattgtcttcactccagtgtggcttctcattcctcaaatccTTGTCTTCTGCCCTCTGCCTTCCTCCTCCAATGCTCCCTCAGCGTTTATCAACAGCAAAGTATATCTCATTGATCTTGTTGCAGAAATCATTATACATACCCAGGAAAGTCCTATGC-----TTCTCTCAATGT-CTACCTCAAATGCCTCTTCCTCTTTGAATCTTTT-ATAAGTCATTGACTTGGGTTTTACTTGTTGGAATGGTATTTGTGTAATGAAGGAGCTCTAGTTCAGGAATATAAAGAGTTGCCCTGACTCTAGCATTTACTATCTAAATCAGAATGTCATGTCACCTTTCTATGAAACAAGGACATGTTTTAAAATGACTT-CTAGGTCTCTTCTACCTCCTGTTATAT-TTTT-GGCATCTTAATAGCAGAAACTGTGTTTTAACATTGTGCAACATGGTTCTTGTTGGTAATTTTCTCTACTCCTTCATTTTCTCTTACAAAAA---TCTTTCCCTTTTAGG--AAAAAAAAAGTTGAAGTTTAAGTCTTTGATTCAAATTTCCACTTTTAAAATCT---TTTTAACTATGCCCTTACAGAATGACAATATGATTACATGTAAAATACCTAGGGTTCTG-AAATTTTAAAGGCAGC-TCTAGAAGTTCACTCGAATAGAAGAGCAAGTCTAGAAAGTTTCTGTAGAGATTTATAAATAGTTGGCTATTTAACAGCCAGACACCCTGCTATAAAGAGATTAAGGAAGCAGAAAACCAATGTGTAGACAAGACACATGAGAGGAGGTGAATTTCCTATCACATTTCATGATGTCTGGGAACACTGGAAGAGAACTGCTTCAGGATATTAATGTCCCAGCATTATTAAAGCAGAGCAGCTGAGAGCAAAGTAGAAATAGAAAGGTCATTAATTACTGACAAGATAATCAACACATTATAGAGCAGATTAAGGTGGCTTTGTACACAGAACAAGGAAAATTATACTGTCAAGTGGAATAAGTTTTCATGTCAAA--GAAT-AAGGAGCTAAGTATGGAAAAGGAACCTACTCTTGAGTTTTTCAAGCTAAACTCAGCATCATTTGTGAGTTCATGAATTCTACATTGCTTTAAATATGAGTAAGGCA-GGCTGAGATACTCTTGTTTTCCTTCTGTTTCATTTCCTTTCAGTTATTTGTTGAGACCTTCTGTGTTTCATGCCAACTTATGAGAAAATTACTGGGAAGATAGATTAGCACAACTGGTAGTTGCTGACACATACTTTACACGAACATAGTGTTTATGTCAGTCCATTCTTTCGTgagttttctgag----taatttcatggaacattgttggatcagca-atttgttctcccagcaatatggagacatccgaaaagacagaccAGGCATTCTTTCCCTATAGTTTTACTAATAAGCTTAATTAGGCAAACATTTATTCCAAAGTTTGTTTATGAACCTGAAAATACCACTTCCCTTCCCCACTTCCAAACTTCT-ATCTTGTGAATATTTCACAGCCGT-ACAGTCATTGCATTTTAAAGAAATATTTTCCCAAATTCTAGGTGATGCCACATTA-TTTTTTGATGCTCGCATTGAGATTCTCTGGGGATCCTCTGGTTTTCTGAGCTCATAGACCAAAT-AAGTATTTGCTGGCCTCTAGAGCTATAAGCTCAACTCATGCAATTAGAAATTGACAATTCAC--ACATTAATAAAGACTCTCTAATTTCACCAGAGGAAACATACCTTATTTCCTTTTGCAT-----AGATATGCCTACCTTTCCCTCCTCCTCTTATATGTCTTTCTCTGGATATTTTCTGCACTATCTGTTTAGTACTT-ACTTCTAGTAGAAGTCTCTCTCCAGTGAGTCCACAAATCACTTCCCTCTGGCATATCCCACCACATCACTGACAGTCCATGAGCATTTAC-TTTTGTTTAGTATCAGGTTACATGTTTATCTATACGATGCTCAAAGATAAATTACTATTTGTGGCCCTCCCATTTCATCTCAATCTTCAAACCAAGACATTTGGT--TCT------GCTTTA---TTCAAACGAGGAATGCCACATAAACAAATCTGAAAGGCAAATGTCAAGTCAGAGGGGG-AAAAAAAGGTTGCAACATATGCAACAAAGTCTTAATACATTTAAAATAaatatataaatctaataaatcaataagccaaaggtaaactaagcaataggaaagcggata--ggatatata----caggcaaatcagaaaaaaagaaatataaccagaa s panTro4.chr9 68696183 3117 + 137840987 GTTTTGGAACTTTTTATGATGGTATTTACTAAAACCAAGAACTGTGATTCTTCCCTTTGAAACAGCTTCCCATTCTTAAACTGTGCC-TTTTCCTATTCCCAAGAACCTAAATCAAGTTTTACCAGCCCCCATGCAAATCCC--AATCCTTTCCCTGCCCCACAACACAGCTTATCCAGCCTCCATTCTGCGATCATGGTCAGTGATGCGGTTGCTTCCACGTCATACCCTCCCCACCTGCAGGTCTTCCTGGCTTCT-CCACCTTGGTCCTCCTAATGCCTGGAAACCCAGGGTAG---CTTTCATCT-TTACCCCAGTCT----TCTCAGCACAGCTGGAGAAAATAATCTAATAATCTaa-tctccactgtcccctccattctgctgggaaag----ccttttatgcatctcatctcttgttgactt--ttcctcatcccccatcc-cagatattcaggtctattttcactcgcaaatttccaacttgaccctccctgcctcattcttaggatgtgatctcatgggttcatctccc-aaaggataaaggcatccaacacaagctccttcagttctgttcctctctgaa---tcttcacctgcctctcttcatctcctgatcaatctgacaaagaaagtattatccttgctcttcgtcaaaaccaacctgcccatctaggcatttgatctcaccttcctgcctcctctgggaacttatttcataaattattccctctctcgtaaatcttcaatctccattagt-cctttgcatactgccaatatatgttagtctcctgcattcaacacca-------------------------------------------atgaacaataaaccttcctttcatctcagtacccatttaagttgccaatccctcccattccttcagcctccaaacttctggaaagacgtatcttcaattattgtcttcactccagtgtggcttctcattcctcaaatccTTGTCTTCTGCCCTCTGCCTTCCTCCTCCAATGCTCCCTCAGCGTTTATCAACAGCAAAGTATATCTCATTGATCTTGTTGCAGAAATCATTATACATACCCAGGAAAGTCCTATGC-----TTCTCTCAATGT-CTACCTCAAATGCCTCTTCCTCTTTGAATCTTTT-ATAAGTCGTTGACTTGGGTTTTACTTGTTGGAATGGTATTTGTGTAATGAAGGAGCTCTAGTTCAGGAATATAAAGAGTTGCCCTGACTCTAGCATTTACTATGTAAATCAGAATGTCATGTCACCTTTCTATGAAACAAGGACATGTTTTAAAATGACTT-CTAGGTCTCTTCTACCTCCTGTTATAT-TTTT-GGCATCTTAATAGCAGAAACTGTGTTTTAACATTGTGCAACATGGTTCTTGTTGGTAGTTTTCTCTACTCCTTCATTTTCTCTTACAAAAA---TCTTTCCCTTTTAGG--AAAAAAAAAGTTGAAATTTAAGTCTTTGATTCAAATTTCCACTTTTAAAATCT---TTTTAACTATGCCCTTACAGAATGACAATATGATTACATGTAAAATACCTAGGGTTCTG-AAATTTTAAAGGCAGC-TCTAGAAGTTCACTCAAATAGAAGAGCAAGTCTAGAAAGTTTCTGTAGAGATTTATAAATAGTTGGCTATCTAACAGCCAGACACCCTGCTATAAAGAGATTAAGGAAGCAGAAAACCAATGTGTAGACAAGATACATGAGAGGAGGTGAATTTCCTATCACATTTCATGATGTCTGGGAACACTGGAAGAGAACTGCTTCAGGATATTAATGTCCCAGCATTATTAAAGCAGAGCAGCTGAGAGCAAAGTAGAAATAGAAAGGTCATTAATTACTGACAAGATAATCAACACATTATAGAGCAGATTAAGGTGGCTTTGTACACAGAACAAGGAAAATTATACTGTCAAGTGGAATAAGTTTTCATGTCAAA--GAAT-AAGGAGCTAAGTATGGAAAAGGAACCTACTCTTGAGTTTTTCAAGCTAAACTCAGCATCATTTGTGAGTTCACGAATTCTACATTGCTTTAAATATGAGTAAGGCA-GGCTGAGATACTCTTGTTTTCCTTCTATTTCATTTCCTTTCAGTTATTTGTTGAGACCTTCTGTGTTTCATGCCAACTTATGAGAAAATTGCTGGGAAGATAGATTAGCACAACTGGTAGTTGCTGACACATACTTTACACGAACATAGTGTTTATGTCAGTCCATTCTTTCATGACTTTTCTGAG----TAATTTCATGGAACATTGTTGGATCAGCA-ATTTGTTCTCCCAGCAATATGGAGACATCCGAAAAGACAGACCAGGCATTCTTTCCCTATAGTTTTACTAATAAGCTTAATTAGGCAAACATTTATTCCAAAGTTTGTTTATGAACCTGAAAATACCACTTCCCTTCCCCACTTCCAAACTTCT-ATCTTGTGAATATTTCACAGCCTT-ACAATCATTGCATTTTAAAGAAATATTTTCCCAAATTCTAGGTGATGCCACATTA-TTTTTTGATGCTCGCATTGAGATTCTCTGGGGATCCTCTGGTTTTCTGAGCTCATAGACCAAAT-AAGTATTTGCTGGCCTCTAGAGCTATAAGCTCAACTCATGCAATTAGAAATTGACAATTCAC--ACATTAATAAAGACTCTCTAATTTCACCAGAGGAAACATACCTTATTTCCTTTTGCAT-----AGATATGCCTACCTTTCCCTCCTCCTCTTGTATGTCTTTCTCTGGATATTTGCTGCACTATCTGTTTAGTACTT-ACTTCTAGTAGAAGTCTCTCTCCAGTGAGTCCACAAATCACTTCCCTCTGGCATATCCCACCACATCACTGACAGTCCATGAGCATTTAC-TTTTGTTTAGTATCAGGTTACATGTGTATCTATACGATGCTCAAAGATAAATTACTATTTGTGGCCCTCCCATTTCATCTCAATCTTCAAACCAAGACATTTGGT--TCT------GCTTTA---TTCAAATGAGGAATGCCACATAAACAAATCTGAAAGGCAAATGTCAAGTCAGAGGGGG-AAAAAAAGGTTGCAACATATGCAACAAAGTCTTAATACATTTAAAATAaatatataaatctaataaatcaataagccaaaggtaaactaagcaataggaaagtggata--ggatatata----caggcaaatcagaaaaaaagaaatataaccagaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64851387 3111 + 135191526 GTTTTGGAACTTTTTATGATGGTATTTACTAAAACCAAGAGCTGTGATTCTTCCCTTTGAAACAGCTTCCCATTCTTAAATTGTGCC-TTTTCCTATTCCCAAGAACCTAAATCAAGTTTTACCAGCCCCCATGCAAATCCC--AATCCTTTCCCTGCCCCACAACACAGCTTATCCAGCCTCCATTCTGCGATCACGGTCAGTGATGCGGTTGCTTCCACGTCATACCCTCCCCACCTGCAGGTCTTCCTGACTTCT-CCACCTTGGTCTTCCTAATGCCTGGAAACCCAGGGTAG---CTTTCATCT-TTACCCCAGTCT----TCTCAGCACAGCTGGAGAAAATA-------AGactaa-tctccactgtcccctccattctgctgggaaag----ccttttatgcatctcatctcttgttgactt--ttcctcatcccccatcc-cagatattcaggtctattttcactcgcaaatttccaatttgaccctccctgcctcattcttaggatgtgatctcatgggttcacctccc-aaaggataaaggcatccaacacaagctccttcagttctgttcctctctgaa---tcttcacccgcttctcttcatctcctgatcaatctgacaaagaaagtattatccttgctcttcgtcaaaaccaacctgcccatctaggcatttgatctcaccttcctgccttctctgggaacttatttcataaattattccctctctcgtaaatcttcaatctccattagt-cctttgcatactgccaatatatgttagtctcctgcattcgacacca-------------------------------------------atgaacaataaaccttcctttcatctcagtacccatttaagctgccaatccctcccattccttcagcctccaaacttctggaaagatgtatcttcaattattgtcttcactccagtgtggcttttcattcctcaaatccTTGTCTTCTGCCCTCTGCCTTCCTCCTCCAATGCTCCCTCAGCATTTATCAATAGCAAAGTATATCTCATTGATCTTGTTGCAGAAATCATTATACATACCCAGGAAAGTCCTATGC-----TTCTCTCAATGT-CTACCTCAAATGCCTCTTCCTTTTTGAATCTTTT-ATAAGTCATTGACTTGGGTTTTACTTGTTGGAATGGTATTTGTGTAATGAAGGAGCTCTAGTTCAGGAATATAAAGAGTTGCCCTGACTCTAGCATTTACTATGTAAATCAGAATGTCATGTCACCTTTCTATGAAACAAGGACATGTTTTAAAATGACTT-CTAGGTCTCTTCTACCTCCTGTTATAT-TTTT-GGCATCTTAATAGCAGAAACTGTGTTTTAACATTGTGCAACATGGTTCTTGTTGGTAATTTTCTCTACTCCTTCATTTTCTCTTACAAAAA---TCTTTCCCTTTTAGGAAAAAAAAAAAGTTGAAATTTAAGTCTTTGATTCAAATTTCCACTTTTAAAATCT---TTTTAACTGTGCCCTTACAGAATAACAATATGATTACATGTAAAATACCTAGGGTTCTG-AAGTTTTAAAGGCAGC-TCTAGAAGTTCACTCGAATAGAAGAGCAAGTCTAGAAAGTTTCTGTAGAGATTTATAAATAGTTGGCTATTTAACAGTCAGGCATCCTGCTATAAAGAGATTAAGGAAGCAGAAAACCAATGTGTAGACAAGATACATGAGAGGAGGTGAATTTCCTATCACATTTCATGATGTCTGGGAACACTGGAAGAGAACTGCTTCAGGATATGAATGTCCCAGCATTATTAAGGCAGAGCAGCTGAGAGCAAAGTAGAAATAGAAAGGTCATTAATTACTGACAAGATAATCAACACATTATAGAGCAGATTAAGGTGGCTTTGTACACAGAACAAGGAAAATTATACTGTCAAGTGGAATAAGTTTTCATGTCAAA--GAAT-AAGGAGCTAAGTATGGAAAAGGAACCTAGTCTTGAGTTTTTCAAGCTAAACTCAGCATCATTTGTGAGTCCAAGAATTCCACATTGCTTTAAATATGAGTAAGGCA-GGCTGAGATACTCTTGTTTTCCTTCTGTTTCATTTCCTTTCAGTTATTTGTTGAGACCTTCTGTGTTTCATGCCAACTTACGAGAAAATTACAGGGAAGACAGATTAGCACAACTGGTAGTTGCTGACACATACTTTACACGAACATAGTGTTTATGTCAGTCCATTCTTTCATGACTTTTCTGAG----TAATTTCATGGAACATTGTTGTATCAGCA-ATTTGTTCTCCCAGCAACATGGAGACATCCGAAAAGACAGACCAGGCATTCTTTCCCTATAGTTTTACTAATAAGCTTAATTAGGCACACATTTATTCCAAAGTTTGTTTATGAACCTGAAAATACCACTTCCCTTCCCCACTTCCAAACTTCT-ATCTTGTGAATATTTCACAGCCTT-ACAATCATTGCATTTTAAAGAAATATTTTCCCAAATTCTGGGTGATGCCACATTA-TTTTTTGATGCTCGCATTGAGATTCTCTGAGGATCCTCTGGTTTTCTGAGCTCATAGACCAAAT-AAGTATTTGCTGGCCTCTAGAGCTACAAGCTCAACTCACGCAATTAGAAATTGACAATTCAC--ACATTAATAAAGACTCTCTAATTTCACCAGAGGAAACATACCTTATTTTCTTTTGCAT-----AGATATGCCTACCTTTCCCTCCTTCTCTTGTATGTCTTTCTCTGGATATTTTCTGCACTAGCTGTTTAGTACTT-ACTTCTAGTAGAAGTCTCTCTCCAGTGAGTTCACAAATCACTTCCCTCTGGCATATCCCACCACATCACTGACAGTCCATGAGCGTTTAC-TTTTGTTTAGTATCAGGTTACATGTGTATCTATACGATGCTCAAAGATAAATTACTATTTGTGGCCCTTCCATTTCATCTCAATCTTCAAACCAAGACATTTGGT--TCT------GCTTTA---TTCAAATGAGGAATGCCGCATAAACAAATCTGAAAGGCAAATGTCCAGCCAGAGGGGG--AAAAAAGGTTGCAACATATGCAACAAAGTCTTAATACATTTAAAATAaatatataaatctaataaatcaataagcaaaaggtaaactaagcaataggaaagtggata--ggttatata----caggcaaatcagaaaaaaagaaatataaccagaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57891177 3094 - 122973662 GTTTTGGAACTTTTTATGATGGTATTTACTAAAACCAAGAGCTGTGATTCTCCCCTTTGAAACAGCTTCCCTTTCTTAAACTGTGCC-TTTTCCTGTTCCCAAGAACCTAAATCAAGTTTTACCAGCCCCCATGCAAATCCC--AATCCTTTCCCTGCCCCACAACACAGCTTACCCAGCCTCCATTCTGCGATCATGGTCAACGATGTGGTTGCTTCCACGTCATACCCT-CCCACCTGCAGGTCTTCCTGGCTTCT-CCACCTGGGTCTTCCTAATGCCTGGAAACCCAGGGTAG---CTTTCATCT-TTACCCCAGTCT----TCTCAGCACAGCTGGAGAAAATA-------AGactaa-tctccactgtcccctccatcctgctgggaaag----ccttttatgcatctcatctcttgttgactt--ttcctcatcccccatcc-cagatattcagatctattttcactcgcaaatttccaactggatcctccctgcctcattcttgggatgtgatctcatgggttcatctcct-aaaggataaaggcatccaacacaagctccttcagttctattcctctctgaa---tcttcacctgcccttcttcatctcgtgatcaatctgacaaagaaagcattatccttgctcttcgtcaaaaccaacctgcccatctaggcatttgatctcaccttcttgcctcctgtgggaacttatttcataaattattccctctctcgtaaatcttcaatctccattagt-cctttgcatactgccaatacatgttagtctcctgcattcgacacaa-------------------------------------------atgaacaataaaccttcctttcatctcagtacccatttaagctgccaatccctcccattccttcagcctccaaacttctggaaagatgtatcttcaattactgtcttcactccagtgtggcttctcattcctcaaatccTTGTCTTCTGCCCTCTGCCTTCCTCCTCCAATGCTCCCTCAGCGTTTATCAACAGCAAAGTATATCTCATTGATCTTGTTGCAGAAATCATTATACATACCCAAGAAAGTCCTATGC-----GTCTATCAATGT-CTACCTCAAATGCCTCTTCCTCTTTGAATCTTTT-ATAAGTCATTGACTTGGGTTTTACTTGTTGGAATAGTATTTGTGTAATGAAGTAGCTCTAGTTCAGGAATATAAAGAGTTGCCCTGACTCTAGCATTTACTATGTAAATCAGAATGTCATGTCACCTTTCTATGAAACAAGGACATGTTTTAAAATGACTT-CTAGGTCTCTTCTACCTCCTGTTATAT-TTTT-CTCATCTTAATAGCAGAAACTGTGTTTTAACATTGTGCAACATGGTTCTTGTTGGTAATTTTCTCTATTCCTTCATTTTCTCTTACAAAAA---TCTTTTCCTTTTAGG--AAAAAAAAAGTTGAAATTTAAGTCTTTGATTCAAATTTCCACCTTTAAAATCT---TTTTAACTGTGCCCTTACAGAATGAAAATATGATTACATGTAAAATACCTACGGTTCTG-AAGTTTTAAAGGCAGC-CCTAGAAGTTCAGTCGAATAGAAGAGCAAGTCTAGAAAGCTTCTGTAGAGATTTATAAATAGTTGGCTATTTAACAGCAAG---------------------AAGGAAGCAGAAAACCAATGTGTAGACAAGATACATGAGAGGAGGTGAATTTCCTATCACATTTCATGACGTGTGAGAATACTGGAAGAGAACTGCTTCAGGATATTAATGTCCCAGCATTATTAAAGCAGAGCAGCTGAGAGCAAAGTAGAAATAGAAAGGTCATTAATTACTGACAAGATAATCAACACATTATAGAGCAGATTAAGGTGGCTTTGTACACAGAACAAGGAAAATTATACTGTCAAGTGGAATAAGTTTTCATGTCAAA--GAAT-AAGGAGCTAAGTATGGAAAAGGAACCTACTCTTGAGTTTTTCAAGCTAAACTCTGCATCATTTGTGAGTCTAAGAATTCTACATTGCTTTAAATATGAGTAAGGCA-GGCTGAGATACTCTTGTTTTCCTTCTGTTTCATTTCCTTTCAGTTATTTATTGAGACCTTCTGTGTTTCATGCCAACTTATGAGAAAATTACTGGGAAGATAGATTAGCACAACTGGTAGTTGCTGACACATAGTTTACATGAACATAGTGTTTATGTCAGTCCATTCTTTCATGACTTTTCTGAG----TAATTTCATGGAACATTGTCAGATCAGCA-ATTTGTTCTCCAAGCAATATGGAGACATCCGAAAAGACAGACCAGGCATTCTTTCCCTATACTTTTACTAATAAGCTTAATTAGGCAAACATTTATTCCAAAGTTTGTTTATGAACCTGAAAATACCACTTCCCTTCCCCACTTCTAAACTTCT-ATCTTGTGAATATTTCACAGCCTT-ACAATCATTGCATTTTAAAGAAATATTTTCCCAAATTCTGGGTGATGCCGCATTA-TTTTTTGATGCTTGCATTGAGATTATCTGGGGACCCTCTGGTTTTCTGAGCTCATAGACCAAAT-AAGTATTTGCTGGCCTCTAGAGCTACAAGCTCAACTCACGCAATTAGAAATTGACAATTCAC--ACATTAATAAAGACTCTCTAATTTCACCAGAGGAAACATACCTTATTTCCTTTTGCAT-----AGATATCCCTACCTTTCCCTTCTTCTCTTGTATATCTTTCTCTGGATATTTTCTGCACTATCTGTTTAGTACTTAACTTCTAGTAGAAGTCTCTCTCCAGTGAGTCCACAAATCACTTCCCTGTGGCATATCCCACCACATCACTGACAGTCCATGAGCTTTTACTTTTTGTTTAGTACCAGGTTACATATGTATCTATACAATGTTCAAAGATAAATTACTATTTGTGGCCCTCCCATTTCATCTCAATCTTCAAAATAAGACATTTGGT--ACT------GCTTTATTCTTCAAATGAGGAATGCCACATAAACAAATCTGAAAGGCAAATGTCAAGCCAGAGGGGGAAAGAAAAGGTTGCAACATATGCAACAAAGTCTTAATACATTTAAAATAaatatataaatctaataaatcaataagcaaaaggtaaactaagcaataggaaagaggata--ggatatata----caggcaaatcagaaaaaaagaaatataaccagaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79820858 3158 + 112192347 CTTTTGGAGCTTTTTATGATGGTATTTACTAAAACCAAGAGCTGTGACTTTTCCCTTTGAAACAGCTTCCCATTCTTACATTGTGCC-TTTACCTATTTCCAAGAACTTAAATCAAGTTTTACCAGCCCCCGTGCAAATCCCCTGATCCTTTCCCTGCCCCACAACACAGCTTATCCAGCCTCCATTCTGTGATTATGGTCAATGATGCAGTTGCTTCCACATCATACCCTCCCCACCTGCAGGTCTTCCTGGCTTCT-CCACCTTGGTCTTCCTAATGCCTGGAAACCCAGGGTAG---CTTTCATCT-TTACCCCAGTCT----TCTCAGCACAGCTGGAGAAAATA-------AGACTAA-TCTCCACTGTCCCCTCCATTCTGCTGGGAAAG----CCTTTTATGCATCTCATCTCTCGTTGACTT--TTCCTCATCCCCCATCC-CAGATGTTCAGATCTATTTTCACTCACAAATTTCCAACTTGACCCTCCCTGCCTCATTCTTAGGATGTGATCTCATGGGTTCATCTCCC-AAAGGATAAAGGTATCCAACACAAGCTCCTTCGGTTCTGTTCCTCTCTGAA---TCTTCACCTGCCTCTCTTCATCTCCTGATCAATCTGACAAAGAAAGTATTATCCTTGCTCTTCATCAAAACCAACCTGCCCATCTAGGAATTTGATCTCACCTTCCTGCCTCCTCTGGGAACTTATTTCATAAATTATTCCCTCTCTCGTAAATCTTCAATCTCCATTAGTCCCTTTGCATACTGCCAATATATGTTAGTCTCCTGCATTTGACACAAATGAACAATAAAACTATATGTTAGTCTCCTGCATTTGACACATATGAACAATAAACCTTCCTTTCATCTCAGTACCCATTTAAGCTGCCAATCCCTACCATTCC-TCGGCCTCCAAACTTCTGGAAAGATGTATCTTCAATTATTGTCTTCACTCCAGTGTGGCTTCTCATTCCTCAAATCCTTGTCTTCTGCCCTCTGCCTTCCTCCTCCAATGCTCCCTCAGCATTTATCAACCGCAAAGTATATCTCATTGATCTTGTTGCAGAAATCATTATACA-ACCCAAGGAAGTCCTATGC-----TTCTCTCAATGA-CCACCTCAAATGCTTCTTCCTCTTTGAATCTTTT-ATAAGTCATTGACTTGGGTTTTACTTGTTGGAATGGTATTTGTGTAATGAAGGAGCTCTAGTTCAGGAATATAAAGAGTTGGCCTCACTCTAGCATTTACTATGTAAATCAGAATGTCATGTCACCTTTATATGAAACAACGACATGTTTCAAAATGACCT-CTAGGTCTCTTCTACTTCCTGTTATAG-TTTT-GGCATCTTAATAGCAGAAACTGTGTTTTAATATTGTGCAACACAGCCCTTGCTGGTAATTTTCTCTATTCCTTCATTTTCTTTTACAAAAA---TTTTTCCCTTTTAGG---AAAAAAAAGTTGAAATTTAAGTCTTTGATTCAAATTTCCACTTTTAAAATCT---TTTTAACTGTGCCCTTACAGAATGAAAATATGACTACATGTAAAATACCTAGGGTTCTG-AAGTTTTAAAGGCAGC-CCTAGAAGTTCACTCAAATAGAAGAGCAAGTCTAGAAAGTTTCTGTAGAGATTTATAAATAGTTGGCTATTTAACAGCAAGACACCCTGCTATAAAGAGATTAAGGAAGCAGAAAACCAATGTGTAGACAAGATTCACGAGAGAAGGTGAATTTCCTATCACATTTCATGATGTCTGGGAACACTGGAAGAGAACTGCTTCAGGATATTAACGTCCCAGCATTATTAAAGCAGAGCAGCTGAGAGCAAAGTAGAAATAGAAAGGCCATTAACTGCTGACAAGATAATCAACACATTATAGAGCACAAAAAGGTGGCTTTGTAC-CAGAACAAGGAAAATTATACTGTCAAGTGGAATAAGTTTTCATGTCAAA--GAATAAAGGAGCTAAGTATGGAAAAGGAACCTACTCTTGAGTTTTTCAAGCTAAACTCAGCATCATTTATGAGTACAAGAATTCTACATTGCTTTAAATATGAGTAAGGCA-GCCTGAGATATTCTTGTTTTCCTTCTGTTTCATTTCCTTTCAGTTATTTGTTGAGACCTTCTGTGTTTCATGCCAACTTATGAGAAAATTACTGGCAAGATAGATTAGCACAACTGGTAGCTGCTGACACATAGTTTACACGAACATAGTGTTTATGTCAGTCCATTCTTTCATGACTTTTCTGAG----TAATTTCATGGAACATTGTTGGATCAGCA-ATTTGTTCTCACAGCAATATGGAGACATCTGAAAAGACAGACCAGGCATTCTTTCCCTACAGTTTTACTAATAAGCTTAATTAGGCAAACATTTATTCCAAAGTGTGTTTATGAACCTGAAAATACCACTTCCCTTCTCCACTCCCAAACTTCT-ATCTTGTGAATATTTCACAGACTT-ACAATCACTGCATTTTAAAGAAATATTTTCCTAAATTCTGGGTGATGCCACATTA-TTTTTTGATGCTCACATTGAGATTTTCTGGGGATCCTCTGGTTTTCTGAGCTCACAGAACAAAT-AAGTATTTGCTGGCCTCTAGAGCTACAAGCTCAACTCACGCAATTAGAAATTGACAATTCAC--ACATTAATAAAGTCTCTCTAATTTCACCAGAGGAAACATACCTTATTTCCTTTTGCAT-----AGATATCCCTACCTTTCCCTCCTTCTCTTGTATATCTTTCTCTGGATATTTTCTGCACTATCTGTTTAGCACTT-ACTTCTAGTAGAAGTCTCTCTCCAGTGAGTCCACAAATCACTTCCCTCTGGCATATCCCACCACATCACTGACAGTCCATGAGCTTTTACTTTTTGTGTAGTATCAGGTTACATGTGTATCTATACAATGCTCAAAGAGAAATCACTATTTGTGGCCCTCCCATTTCATCTCAATCTTCAAACCAAGACATTTGGT--TCT------GCTTTATTCTTCAAATGAGGAATACCACATAAACAAATCTGAAAGGCAAATGTCAAGCCAGAGGGGAAAAAAAAAGGTTGCAACATATGCAACAAAGTCttaatacatttaaaataaatatataaatctaataaattaataagcaaaaggtaaactaagcaataggaaaatggata--ggatatata----caggcaaatcagaaaaaaagaaatataaccagaa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80900628 3115 + 112612857 CTTTTGGAGCTTTTTATGATGGCATTTACTAAAACCAAGAGCTGTGACTTTTCCCTTTGAAACAGCTTCCCATTCTTACATTGTGCC-TTTACCTATTTCCAAGAACTTAAATCAAGTTTTACCAGCCCCCGTGCAAATCCCCTGATCCTTTCCCTGCCCCACAACACAGCTTATCCAGCCTCCATTCTGTGATTATGGTCAATGATGCAGTTGCTTCCACGTCATACCCTCCCCACCTGCAGGTCTTCCTGGCTTCT-CCACCTTGGTCTTCCTAATGCCTGGAAACCCAGGGTAG---CTTTCATCT-TTACCCCAGTCT----TCTCAGCACAGCTGGAGAAAATA-------AGactaa-tctccactgtcccctccattctgctgggaaag----ccttttatgcatctcatctctcgttgactt--ttcctcatcccccatcc-cagatgttcagatctattttcactcacaaatttccaacttgaccctccctgcctcattcttaggatgtgatctcatgggttcatctccc-aaaggataaaggcatccaacacaagctccttcggttctgttcctctctgaa---tcttcacctgcctctcttcatctcctgatcaatctgacaaagaaagtattatccttgctcttcatcaaaaccaacctgcccatctaggaatttgatctcaccttcctgcctcctctgggaacttatttcataaattattccctctctcgtaaatcttcaatctccattagtccctttgcatactgccaatatatgttagtctcctgcatttgacacaa-------------------------------------------atgaacaataaaccttcctttcatctcagtacccatttaagctgccaatccctaccattcc-tcggcctccaaacttctggaaagatgtatcttcaattattgtcttcactccagtgtggcttctcattcctcaaatccTTGTCTTCTGCCCTCTGCCTTCCTCCTCCAATGCTCCCTCAGCATTTATCAACCGCAAAGTATATCTCATTGATCTTGTTGCAGAAATCATTATACA-ACCCAAGGAAGTCCTATGC-----TTCTCTCAATGA-CCACCTCAAATGCTTCTTCCTCTTTGAATCTTTT-ATAAGTCATTGACTTGGGTTTTACTTGTTGGAATGGTATTTGTGTAATGAAGGAGCTCTAGTTCAGGAATATAAAGAGTTGGCCTCACTCTAGCATTTACTGTGTAAATCAGAATGTCATGTCACCTTTATATGAAACAACGACATGTTTCAAAATGACCT-CTAGGTCTCTTCTACTTCCTGTTATAG-TTTT-GGCATCTTAATAGCAGAAACTGTGTTTTAATATTGTGCAACACAGCCCTTGCTGGTAATTTTCTCTATTCCTTCATTTTCTTTTACAAAAA---TTTTTCCCTTTTAGG---AAAAAAAAGTTGAAATTTAAGTCTTTGATTCAAATTTCCACTTTTAAAATCT---TTTTAACTGTGCCCTTACAGAATGAAAATATGACTACATGTAAAATACCTAGGGTTCTG-AAGTTTTAAAGGCAGC-CCTAGAAGTTCACTCAAATAGAAGAGCAAGTCTAGAAAGTTTCTGTAGAGATTTATAAATAGTTGGCTATTTAACAGCAAGACACCCTGCTATAAAGAGATTAAGGAAGCAGAAAACCAATGTGTAGACAAGATTCACGAGAGAAGGTGAATTTCCTATCACATTTCATGATGTCTGGGAACACTGGAAGAGAACTGCTTCAGGATATTAACGTCCCAGCATTATTAAAGCAGAGCAGCTGAGAGCAAAGTAGAAATAGAAAGGCCATTAACTGCTGACAAGATAATCAACACATTATAGAGCACAAAAAGGTGGCTTTGTAC-CAGAACAAGGAAAATTATACTGTCAAGTGGAATAAGTTTTCATGTCAAA--GAATAAAGGAGCTAAGTATGGAAAAGGAACCTACTCTTGAGTTTTTCAAGCTAAACTCAGCATCATTTATGAGTACAAGAATTCTACATTGCTTTAAATATGAGTAAGGCA-GCCTGAGATATTCTTGTTTTCCTTCTGTTTCATTTCCTTTCAGTTATTTGTTGAGACCTTCTGTGTTTCATGCCAACTTATGAGAAAATTACTGGCAAGATAGATTAGCACAACTGGTAGTTGCTGACACATAGTTTACACGAACATAGTGTTTATGTCAGTCCATTCTTTCATGACTTTTCTGAG----TAATTTCATGGAACATTGTTGGATCAGCA-ATTTGTTCTCACAGCAATATGGAGACATCTGAAAAGACAGACCAGGCATTCTTTCCCTACAGTTTTACTAATAAGCTTAATTAGGCAAACATTTATTCCAAAGTGTGTTTATGAACCTGAAAATACCACTTCCCTTCTCCACTCCCAAACTTCT-ATCTTGTGAATATTTCACAGACTT-ACAATCACTGCATTTTAAAGAAATATTTTCCTAAATTCTGGGTGATGCCACATTA-TTTTTTGATGCTCACATTGAGATTTTCTGGGGATCCTCTGGTTTTCTGAGCTCACAGAACAAAT-AAGTATTTGCTGGCCTCTAGAGCTACAAGCTCAACTCACGCGATTAGAAATTGACAATTCAC--ACATTAATAAAGTCTCTCTAATTTCACCAGAGGAAACATACCTTATTTCCTTTTGCAT-----AGATATCCCTACCTTTCCCTCCTTCTCTTGTATATCTTTCTCTGGATATTTTCTGCACTATCTGTTTAGCACTT-ACTTCTAGTAGAAGTCTCTCTCCAGTGAGTCCACAAATCACTTCCCTCTGGCATATCCCACCACATCACTGACAGTCCATGAGCTTTTACTTTTTGTGTAGTATCAGGTTACATGTGTATCTATACAATGCTCAAAGAGAAATCACTATTTGTGGCCCTCCCATTTCATCTCAATCTTCAAACCAAGACATTTGGT--TCT------GCTTTATTCTTCAAATGAGGAATACCACATAAACAAATCTGAAAGGCAAATGTCAAGCCAGAGGGGAAAAAAAAAGGTTGCAACATATGCAACAAAGTCTTAATACATTTAAAATAaatatataaatctaataaattaataagcaaaaggtaaactaagcaataggaaaatggata--ggatatata----caggcaaatcagaaaaaaagaaatataaccagaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76950078 3116 + 107442819 cttTTGGAGCTTTTTATGATGGTATTTACTAAAACCAAGAGCTGTGACTTTTCCCTTTGAAACAGCTTCCCATTCTTACATTGTGCC-TTTACCTATTTCCAAGAACTTAAATCAAGTTTTACCAGCCCCCGTGCAAATCCCCTGATCCTTTCCCTGCCCCACAACACAGCTTATCCAGCCTCCATTCTGTGATTATGGTCAATGATGCAGTTGGTTCCACGTCATACACTCCCCACCTGCAGGTCTTCCTGGCTTCT-CCACCTTGGTCTTCCTAATGCCTGGAAACCCAGGGTAG---CTTTCATCT-TTACCCCAGTCT----TCTCAGCACAGCTGGAGAAAATA-------AGACTAA-TCTCCACTGTCCCCTCCATTCTGCTGGGAAAG----CCTTTTATGCATCTCATCTCTCGTTGACTT--TTCCTCATCCCCCATCC-CAGATGTTCAGATCTATTTTCACTCACAAATTTCCAACTTGACCCTCCCTGCCTCATTCTTAGGATGTGATCTCATGGGTTCATCTCCC-AAAGGATAAAGGCATCCAACACAAGCTCCTTCGGTTCTGTTCCTCTCTGAA---TCTTCACCTGCCTCTCTTCATCTCCTGATCAATCTGACAAAGAAAGTATTATCCTTGCTCTTCATCAAAACCAACCTGCCCATCTAGGAATTTGATCTCACCTTCCTGCCTCCTCTGGGAACTTATTTCATAAATTATTCCCTCTCTCGTAAATCTTCAATCTCCATTAGTGCCTTTGCATACTGCCAATATATGTTAGTCTCCTGCATTTGACACAA-------------------------------------------ATGAACAATAAACCTTCCTTTCATCTCAGTACCCATTTAAGCTGCCAATCCCTACCATTCC-TTGGCCTCCAAACTTCTGGAAAGATGTATCTTCAATTATTGTCTTCACTCCAGTGTGGCTTCTCATTCCTCAAATCCTTGTCTTctgccctctgccttcctcctccaAAGCTCCCTCAGCATTTATCAACCGCAAAGTATATCTCATTGATCTTGTTGCAGAAATCATTATACATACCCAAGGAAGTCTTATGC-----TTCTCTCAATGA-CCACCTCAaatgcttcttcctctttgaatCTTTT-ATAAGTCATTGACTTGGGTTTTACTTGTTTGAATGGTATTTGTGTAATGAAGGAGCTCTAGTTCAGGAATATAAAGAGTTGGCCTCACTCTAGCATTTACTATGTAAATCAGAATGTCATGTCACCTTTATATGAAACAACGACATGTTTCAAAATGACCT-CTAGGTCTCTTCTACTTCCTGTTATAG-TTTT-GGCATCTTAATAGCAGAAACTGTG-TTTAATATTGTGCAACACAGCCCTTGCTGGTAATTTTCTCtattccttcattttctcttacaaaaa---tttttcccttttagg---aaaaaaaagttgaaatttaagtctttgattcaaatttccacttttaaaatct---ttttaattgtGCCCTTACAGAATGAAAATATGACTACATGTAAAATACCTAGGGTTCTG-AAGTTTTAAAGGCAGC-CCTAGAAGTTCACTCAAATAGAAGAGCAAGTCTAGAAAGTTTCTGTAGAGATTTATAAATAGTTGGCTATTTAACAGCAAGACACCCTGCTATAAAGAGATTAAGGAAGCAGAAAACCAATGTGTAGACAAGATTCACGAGAGAAGGTGAATTTCCTATCACATTTCATGATGTCTGGGAACACTGGAAGAGAACTGCTTCAGGATATTAATGTCCCAGCATTATTAAAGCAGAGCAGCTGAGAGCAAAGTAGAAATAGAAAGGCCATTAATTGCTGACAAGATAATCAACACATTATAGAGCACAAAAAGGTGGCTTTGTAC-CAGAACAAGGAAAATTATACTGTCAAGTGGAATAAGTTTTCATGTCAAA--GAATAAAGGAGCTAAGTATGGAAAAGTAACCTACTCTTGAGTTTTTCAAGCTAAACTCAGCATCATTTATGAGTACAAGAATTCTACATTGCTTTAAATATGAGTAAGGCA-GCCTGAGATattcttgttttccttctgtttcattttctttcagttatttgTTGAGACCTTCTGTGTTTCATGCCAACTTATGAGAAAATTACTGGCAAGATAGATTAGCACAACTGGTAGTTGCTGACACATAGTTTACACGAACATAGTGTTTATGTCAGTCCATTCTTTCATGACTTTTCTGAG----TAATTTCATGGAACATTGTTGGATCAGCA-ATTTGTTCTCACAGCAATATGGAGACATCTGAAAAGACAGACCAGGCATTCTTTCCCTACAGTTTTACTAATAAGCTTAATTAGGCAAACATTTATTCCAAAGTGTGTTTATGAACCTGAAAATACCACTTCCCTTCTCCACTCCCAAACTTCT-ATCTTGTGAATATTTCACAGACTTAACAATCactgcattttaaagaaatattttcctaaattctGGGTGATGCCACATTA-TTTTTTGATGCTCACATTGAGATTTTCTGGGGATCCTCTGGTTTTCTGAGCTCACAGAACAAAT-AAGTATTTGCTGGCCTCTAGAGCTACAAGCTCAACTCACGCGATTAGAAATTGACAATTCAC--ACATTAATAAAGTCTCTCTAATTTCACCAGAGGAAACATACCTTATTTCCTTTTGCAT-----AGATATCCCTacctttccctccttctcttgtATATCTTTCTCTGGATATTTTCTGCACTATCTGTTTAGCACTT-ACTTCTAGTAGAAGTCTCTCTCCAGTAAGTCCACAAATCACTTCCCTCTGGCATATCCCACCACATCACTGACAGTCCCTGAGCTTTTACTTTTTGTGTAGTATCAGGTTACATGTGTATCTATACAATGCTCAAAGAGAAATCACTATTTGTGGCCCTCCCATTTCATCTCAATCTTCAAACCAAGACATTTGGT--TCT------GCTTTATTCTTCAAATGAGGAATGCCACATAAACAAATCTGAAAGGCAAATGTCaagccagaggggaaaaaaaaaggttgcaaCATATGCAACAAAgtcttaatacatttaaaataaatatataaatctaataaattaataagcaaaaagtaaactaagcaataggaaaatGGATA--GGATATATA----Caggcaaatcagaaaaaaagaaatataaccagaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81214540 3108 + 108555830 CTTTTGGAGCTTTTTATGATGGTATTTACTAAAACCAAGAGCTGTGACTTTTCCCTTTGAAACAGCTTCCCATTCTTACATTGTGCC-TTTACCTATTTCCAAGAACTTAAATCAAGTTTTACCAGCCCCCGTGCAAATCCCCTGATCCTTTCCCTGCCCCACAACACAGCTTATCCAGCCTCCATTCTGTGATCATGGTCAATGATGTAGTTGCTTCCACGTGATACCCTCCCCACCTGCAGGTCTTCCTGGCTTCT-CCACCTTGGTCTTCCTAATGCCTGGAAACCCAGGGTAG---CTTTCATCT-TTACCCCAGTCT----TCTCAGCACAGCTGGAGAAAATA-------AGactaa-tctccactgtcccctccattctgctgggaatg----ccttttatgcatctcatctctcgttgactt--ttcctcatcccccatcc-cagatgttcagatctattttcacttacaaatttccaacttgaccctccctgcctcattcttaggatatgatctcatgggttcatctccc-aaaggataaaggcatccaacacaagctccttcggttctgttcctctctgaa---tcttcacctgcctctcttcatctcctgatcaatctgacaaagaaagtattatccttgctcttcatcaaaaccaacctgcccatctaggaatttgatctgaccttcctgcctcctctgggaacttatttcataaattattccctctctcataaatcttcaatctccattagt-cctttgcatactgccaatatatgttagtctcctgcatttgacacaa------------------------------------------------caataaaccttcctttcatctcagtacccatttaagctgccaatccctaccattcc-tcggcctccaaacttctggaaagatgtatcttcaattattgtcttcattccagtgtggcttctcattcctcaaatccTTGTCTTCTGCCCTCTGCCTTCCTCCTCCAATGCTTCCTCAGCATTTATCAACCGCAAAGTATATCTCATTGATCTTGTTGCAGAAATCATTATACAAACCCAAGGAAGTCCTATGC-----TTCTCTCAATGA-CCACCTCAAATGCTTCCTCCTCTTTGAATCTTTT-GTAAGTCATTGACTTGGGTTTTACTTGTTGGAATGGTATTTGTGTAATGAAGGAGCTCTAGTTGAGGAATATAAAGAGTTGGCCTGACTCTAGCATTTACTATGTAAATCAGAATGTCATGTCACCTTTATATGAAACAAGGACATGTTTCAAAATGACCT-CTAGGTCTCTTCTACTTCCTGTTATAT-TTTT-GGCATCTTAATAGTAGAAACTGTGTTTTAATATTGTGCAACACAGCCCTTGCTGGTAATTTTCTCTATTCCTTCATTTTCTCTTACAAAAA---TTTTTCCCTTTTAGG---AAAAAAAAGTTGAAATTTAAGTCTTTGATTCAAATTTCCACTTTTAAAATCT---TTTTAACTGTGCCCTTACAGAATGAAAATATGACTACATGTAAAATACCTAGGGCTCTG-AAGTTTTAAAGGCAGC-CCTAGAAGTTCACTCAAATAGAAGAGCAAGTCTAGAAAGTTTCTGTAGAGATTTATAAATAGTTGGCTATTTAACAGCAAGACACCCTGCTATAAAGAGATTAAGGAAGCAGAAAACCAATGTGTAGACAAGATTCACGAGAGAAGGTGAATTTCCTATCACATTTCATGATGTCTGGGAACACGGGAAGAGAACTGCTTCTGGATATTAATGTCCCAGCATTATTAAAGCAGAGCAGCTGAGAGCAAAGTAGAAATAGAAAGGCCATTAATTGCTGACAAGATAATCAACACATTATAGAGCACAAAAAGGTGGCTTTGTAC-CAGAACAAGGAAAATTATACTGTCAAATGGAATAAGTTTTCATGTCAAA--GAATAAAGGAGCTAAGTATGGAAAAGGAACCTACTCTTGAGTTTTGCAAGCTAAACTCAGCATCATTTATGAGTACAAGAATTCTACATTGCTTTAAATATGAGTAAGGCA-GCCTGAGATATTCTTGTTTTCCTTCTGTTTCATTTTCTTTCAGTTATTTGTTGAGACCTTCTGTGTTTCATGCCAACTTATGAGAAAATTACTGGCAAGATAGATTAGCACAACTGGTAGTTGCTGACACATAGTTTACACGAACATAGTGTTTATGTCAGTCCATTCTTTCATGACTTTTCTGAC----TAATTTCATGGAACATTGTTGGATCAGCA-ATTTGTTCTCACAGCAATATGGAGACATCTGAAAAGACAGACCAGGCATTCTTTCCCTACAGTTTTACTAATAAGCTTAATTAGGCAAACATGTATTCCAAAGTTTGTTTATGAACCTGAAAATACCACTTCCCTTCTCCACTTCCAAACTTCT-ATCTTGTGAATATTTCACAGACTT-AAAATCTCTGCATTTTAAAGAAATATTGTCCTAAATTCTGGGTGATGCCACATTA-TTTTTTGATGCTCACATTGAGATTTTCTGGGGATCCTCTGGTTTTCTGAGCTCACAGAACAAAT-AAGTATTTGCTGGCCTCTAGAGCTACAAGCTCAACTCACGCGATTAGAAATTGACAATTCAC--ACATTAATAAAG--TCTCTAATTTCACCAGAGGAAACATACCTTATTTCCTTTTGCAT-----AGATATCCCTACCTTTCCCTCCTTCTCTTGTATATCTTTCTCTGGATATTTTCTGCACTATCTGTTTAGCTCTT-ACTTCTAGTAGAAGTCTCTCTCCAGTGAGTCCACAAATCACTTCCCTCTGGCATATCCCACCACATCACTGACAGTCCATGAGCTTTTACTTTTTGTGTAGTATCAGGTTACATGTGTATCTATACAATGCTCAAAGAGAAATCACTATTTGTGGCCCTCCCATTTCATCTCAATCTTCAAACCAAGACATTTGGT--TCT------GCTTTATTCTTCAAATGAGGAATGCCACATAAACAAATCTGAAAGGCAAATGTCAAGCCAGAGGGGAAAAAAAAAGGTTGCAACATATGCAACAAAGTCttaatacatttaaaataaatatataaatctaatcaattaataagcaaaaggtaaactaagcaataggaaaatggata--ggatatata----caggcaaatcagaaaaaaagaaatataaccagaa i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111449339 3101 - 210400635 GTTTTGGAGCTTTTTATGATGATATTTACTAAAACCAAGAGCTGTGATTCTTCCCTTTGAAACAGCTTTCCATTCTTTAATTGTGCC-TTTTCCCATTACCAAGAACCTAAATCAAATTTTACCAGCCCCCATGCAATTCCCCTGATCCTTTCCCTGCTCCTCAACACAGCTTCTCCAGCCTCCATTCTGAGATCATAATCAATGATGCAGTTGCTTCCATGTC-TACCCTCCCCACCTG----------------CT-TCACCTTGGTTCTCCTAATGCCTGGAATCCCAGGGCAG---CTTTCATCT-TTACCCCAGTCT----TCTTAAAACAGCTGGAGAAAATA-------AGACTAA-TCTCCACTGT-CCCTCAATTCTAGTGGGAAAG----TCTTTTATGCATCTCTTCTCTCATTGATtt--ttcctaatccctcatcc-cagattttcagatctgttttcacttgcagatttccaacttgaccctccctgcctcattcttaggttgtgatcttatgggttcatctcccaaaaggatgaaggcatccaacacaagctccttcagtgctgttcctctctgaatcttcttcacctgcctctcttcatctcctgatcaatctgacaaagaaagtattatccttgctcttagtcaaaaccaacctgcccatctaggcattt-atctcacctccctgcctcctctgggaacttatttcataaattattccctcacttgtaaatcttcaatctcctttagt-cctttgcacactgccaatata-gttagtctcctacatttgacacaa-------------------------------------------atgaacaataaaccttcctttcatctcagtacccttttaagctgccaatccctcccattcctttagcctccaaacttctcgaaaaacctatcttcaattattgtcttcattccagtgtggcttctcattcctcaaatcc-TGTCTTCTGCCCTCTGTCTGCCTCCTCCAGTGCTCCCTCGGGGTTTATCTACAGCAAAGTATATCTTATTGATCTTGTTGCAGAAATCATTCTGCA-ACCCGAGAAAGTCCTATGC-----TTCTCTCAATGT-CCACTTCAGATGCCTCCTCTTCTTTGAATTTTTTAATAAGTTGTTGACTTGGGCTTTACTTGTTGGAATGATATTTGTGTAATGAAGGAGATCTAGTTCAGGAATATAAAGAGTTGGCCTGACTCTAGCATTAACTATGTAAATCAGAATGTCATGTCACCTTTCTATGAAACAAGGACATGTTTTAAAATGACCT-CTTGGTCTCTTCTACCTCCTGTTATATATTTT-GGCATCTTAATAGCAGCAACTGTGTTTTAACATTATGCAGCACAGTTCTCATTGGTAACTTTCTCTA---CTTCATTTCCTCTTATAAAAAAATCTTTCCCTTTTTAGG--AAAAAAATAGTTGAAATGTAAGTCTTTGATTCAAATTTTCACTTTTAAAATCT---TTTTAACTGTGCCCTTTCAGAATGAAAATATGACTACTTGTAAAATACTCAGGGTTCTG-AATTTTTAAAGGCAGC-CCTAGAAGTTCACTCGAATAGAAAAGCAAGTCTAGAACGTTTCTGTAGAGATTTATAAATAGTTGGCTGTTTAACAGCAAGACATCCTGCTATAAAGAGATTAAGGAAGCAGAAAACCAATGTGTAGACAAGATACATGAGAGGAGGTGAATTTCCTACCACATTTCATGAGGTCTGGGAACATTGGAGGAGAATTGTTTCAGGATATTAATGTCCCAGCATTATCGAAGCAGAGCAGCTTAGAGAAAAGTAGAACTAGAAAGGTCATTAATTACTAACAAGATAATCAACACATTATAGGCCAGATTAAGGTGAC--TGTCCACAGAACAAGGACAATTATACTGTCAAGTGGAATAAGTTTTCATGTCAAA--GAATAGAGGAGCTAAGGATGGAAAGGGAACCTACTCTTGAGTTTTTCAAGCTAAACTCAGCATCATTTATGAGTCCAAGAATTCTACAGTGCTTTAAATATGAGTAAGGCAGGGCTGAGATACTCTCGTTTTCCTTCTGTTTCATTTCCTTTCAGGTATTTGTTGAGGGCTTCTGTGTTTCATGCCAACTTATGAGACAATTACAAG-AAGACTGATTAGCACAACTGGTAGTTGCTAACAC--AGTTTACAAGAACATAATGTTTATGTCAGTCAATTCTTTCATGACTTTCCTGAGTAATTAATTTCCTGGAACACTGTTGGATCAGCA-ATTTGTTCTCCCAGCAATGTGGAGACATCTGAAAA-ACAGACCGGGCATTCTTTCCCTATAGTTTTACTAATAAGCTTAATTAGGAAAACGTTTATTCCAAAGTTTG-TTATGAACCTAAAAATACCACCTCCCTTCCCCACTTCCAAATTTCT-ATCTTGTGAATATTTCACAGCCTT-ACAATCATTGGATTTTAAAGGGATATTTTCCCAAGTTCTGGGTGATGCCATATTATTTTTTTGATGCTTACAATGAGATTCTCTGGGGATCTTCTGGTTTTCTGAGCTCATAGACCAAAT-AAGTATTTGCTGGCCTCTGGAGCTACAAGATCAACTCATGCAATTAGAAATTGACAATTCAC--ATGTTAATAAAGACCCTCCACTTTCACCAGAGGAAACATACCTTATTTCCTTTTGCAC-----AGATATCCCTACCTTTC---TCTTCTCTCGTGTATCTTTCTCTGGATATTTTCTGCACTATCTGTTTAGTTCGT-ACCTCTAGTAGAAGTCTCTCTCCAGGGAGTTCACAAATCACTTCACTCCGGCATACCCCACCATACCACTGACAGTCCATGAGCTTTTACTTTTTGTTTAGTATCAGGTTATGTGAGTATCTATACAATGCTCAAAAACAAATTACTATTTGTGGCTCTCCCTTTTCAGCTCAATCTTCAGGCCAACAAATTTGGTTCTCT------GTTTTATTCTTCAAATGAGGAATGCCTCATAAACAAATTTGAAAGGCAAATGTAAAGCCAGAGGGGA---AAAAAGGTTTCAATATATGCAACAAACTCTTAATACATTTAAAATAaatatataaatctaataaatcagtaagcaaaaggtaaactaagcaataggaaagtggata--ggatatccactttcaggcaaatcagaaaaaaaggaatacaaccagaa i calJac3.chr1 C 0 C 0 s canFam3.chr1 35332593 3065 - 122678785 GATTTGGGGCTTTTTATGATGATATTTATTAAAACCAAAAGCTGTGACTCTTCTCTTGGCACCAACTTTCCATCCTTACCTGGAATCATTTTGCTATTCCCAATGACTGATGGGGGGTTTTACAGGGCTTCTTG--ATTTTCTGGATGCCTTCCATGGACCCCAACACAGCTTCTCTAGCCTCCATTCTGCAGGTGTGGTCAATGATGCTCTCACTTTTGC----------TCCCA-------GTGCTTCAGGCTTCTCCCACCTTGGTCCCCTCAGTTTCTGGGAGTGTTCAGCAGCTACTTTCGTCTCCTTTCCCTCTCTGGGGTCTCAGCACAGCTAGAGAAAATA-------CCACTGGCTCTCCAATGTCCCCTCCATGCTAATAGGAGAGCCTTCCTTTTATTCCTCTCTCCTCTCAGTGACTTCCTTCCTCACCCTCTGCCCTCAGACATTCAGATTCATCTTCACTTGCAGCTTTCCAACTTGATTCTCCCTGCCTCAGTCTCAGGATGTGACCTCACAGATGCATGTCCCAAAAGGATGAAGGCTTTCAACACAAACTCCTTTGATTCTGTTTCTCCCCAAA---TCCTCCTTTGCCTCTATGGGTCGCCTGGCACATGTGAC--AGGAAGTATTACCCTTGTTCTTAGTCAAAACCAACCAGTCTATCCATATGTGTGATTTCACCATCCTGTCACCTGTGGGACCTTATTTCCTAAATTATT-TCTTTCTCATAAACCTTCAGTATCCA-CAGT-CCTTTATACACTGCCAAACTATGTTGGCC-----------ACATGA-------------------------------------------ACAAACAACCAACCTTCCTTTTACTTTTTTACCCATTTAAATTACCACCCAATCCCATGT--TTTGTCTTCAAACTTCTTGGAAAACACATCTTCAATTAGTGTCTGTACTCCTGTGCAGGTTCTTATTTCTGAAATCCTCACCTTCTGACCGGTGCCTTCCTCCTACAA---------AGTATTTATCAACAACAAC-TATTTCCCACTGATGGTGCTATAGGAATCATCAT----GCCTGAGAAGATCCTACCCTACCTTTCTCTCAAAGTCCCATTTCAAGTGCCTCTTCCTCTTTGAATATTTA-ATAAATCA-TAACTCATGTCTTACTTATTagcgtgagatttgtagaat-aggaagacttggcttcga-------------gtcttgactcaggcattaatgatgtaattcagaatgtcatatcacctctctgTGTAATAAGGATATGTTTTTGGGTGACCCACCACATCTCTTCTACCACATATTACAT-TTTTAGGCATCTTAATGTCAACAACTGTCTTTTCATACTGTGTAGCACAGCCCTTGTGGAGAGCTCTCTGTAGCTCCTTATTTCCTCTTGGGATAA---TCTTCTCCTTTTAGC--AAAAAACTTGATGAAATTTAAGTCTGTGGTTTGGATTTGTGCTTTTAAAATCTTCCTTTTAACTTTGCCCTTTAATGATGAAAATGCAACTAGATGTAAAATATCTTGGCTTCTGAAAGTCTTAAAGTCAATACTTAGAAGTTCATTCAAATAGAAGAGCAAGTCTAGTAAGTTTCTGAAGAGACTTCTAAATAGGTGGCCATTGGATAACAAGACATCCTGCTCTAAAGGGATTAAGGAACCAGAAAACCAATGTGTAGACAAGATATATGAAAGGTGATAGATTTCCTATCACATTTCTTGATGTCTGGGTACATGGAGAAATGGCTGCCCTAGGATATTAATGTCCTGGTATAATTAAAGTAGGGCCACTGAGTGCAAAGTAGAAGTAGCAAGATCATTAACTAATGACAAGATAATCAACACATTATAGAACAGATTAGAGTAGTTCCATATACATAGCAAGGAAAATTATACTGTCAAGTGGAATAAGTTTTAATGTGGAACTGAATAAAAAGACGAAGTATGGAAAAGGAGACTCCTCTTGAGTTTTTCAAGCTAGACTTGGTGTCAGTTGTCAATCCAGGAATTCTCAATTACTTTAAATATGAGCAACACGGGGTTGAGATACTCGAGCTTTCCTTTTCTCTC-----CTTTTAGGTATTAGTTGAAGGCTTCTGCATTTCATGTCAACTTATGGGGGAATTACTGGGAAGACTGGTTTGCACAACTGCTGGTTGCCAACAC--AGCTTGCACGAGTGTAG------CATCAGTGCATTCTTCTAGAACTTTCCCAAGGAATTAATCTCCTGGGGTATTGCTAGATTACCACATTTGTCCTCCCAGCACAGTGGAGAAATCTGAAAAGACATCACAGGCATTCTTTCCCCATGGTTTTATTAACAAACTTAATGAAGCAATCATTTATTCCAAGGATTGCTTATGAACCTGAAAGCACTACCTCC--TCTATACTTTCAAATTCCTAATCCTGTGAATATTTCCAGATCTT-GAAATGGCTACATTTTTAGGGAGACTTTTCCCAAGTTCT-TATGAGGCAACATTA-TTTTTTGATGTTCACATTGAGATTCTCTAGGGATCCTCTGGTTTTCTGAGCTCTTAAATCAGGTAAAGTATTTGCTGGCTTTGGGAGCTGTGAGCTCCATTCACTTGCTTGGAAATTGACAATTCATAAACGTTAATAAA--------ACTGTTACCCAGAGAAAAACACCATCTTTTCTTTTGCATAGAAAAGATACCTCCAGCTTTTTCTCCCTCTCTTGTGTGACTTTCTCTGGCAATTTTCTGCTCTATCTTTTCAGTACCC-ACCTCTAGGAGAAG--TCACTCCAGATAGTCCCCAAGCTACTTTCCCATGGCATCCCCTGCCGCACTGCTATTGAGCGGTGA-CTCTGATTTTCTGTCTAACGTCAGGTTACATGTGTACCCATA-AATACTCAGGGACACACAACGA-TTGTGGCCCACCCTTTTCATCTTAGTCTTTAAACCAAGATATTTAAT--TCTCTCTTAGTTTCATTCCTCAGATAAGGATGGCCTAATGAATGTCTGTGAAAGACAAATGTCAGGCCAGG------AAAAAAAGTTTGCAACATATATGGCAAACTCTTAGGATATTTGATATATGTGT-TTACCCTAataaatcaataagcagaaggt---------aataaggaagtgggcaatggatatgta----caggcaaatcagaaaaaaagaaatactactggGA i canFam3.chr1 C 0 I 133 e mm10.chr19 38088904 2617 - 61431566 I a score=888750.000000 s hg38.chr9_GL383541v1_alt 133797 293 + 171286 aataaatgcacaaatatacccaacctcattataatcaaagacatTATGtttttagacagggtcttactctgtcacccaggctggagtccagtggtgtgatcatagctcactgtaaccttgacctctgcaaggtcaggtgatcctcccacctcagcctcccaagtagctggaagtacaggtgtgcaccatcatgtacagctaatttttgcattttttgtagaaatgtggtctcactattacccagcttgtctcaaacccctgggctcaagcgatccacccatgtatgacctccc s panTro4.chr9 68699300 293 + 137840987 aataaatgcacaaatacacccaacctcattataatcaaagacatTATGtttttagacagggtcttactctgtcacccaggctggagtccagtggtgtgatcatagctcactgtaaccttgacctctgcaaggtcaggtgatcctcccacctcagcctcccaagtagctggaactacaggtgtgcaccatcatgtacagctaagttttgcattttttgtagaaatggggtctcactattacccagcttgtctcaaacccctgggctcaagcgatccacccatgtatgacctccc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64854498 293 + 135191526 aataaatgcacaaatatacccaacctcattataatcaaagacatTATGtttttagacagggtcttactctgtcacccaggctggagtgcagtgctgtgatcatagctcactgtaactttgacctctgcaaggtcaggtgatcctcccacctcagcctcccaagtagctggaactacaggtgtgcaccatcttgtacagctaatttttgcattttttgtagaaatgaggtctcactattacccagcttatctcaaacccctgggctcaagcgatccacccatgtatgacctccc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57894271 293 - 122973662 aataaatgcacaaatacacccaacctcattataatcaaagacatTATGtttttagacagggtcttactctgttacccaggctggagtgcagtggtgtgatcatagctcactgtaaccttgacctctgcaaggtcaggtgatcctcccacctcagcctcccaagtagctgaaactacaggtgtgcaccatcatgtacagctaatttttgcattttttgtagaaatggggtctcactattacccagcttgtctcaaacccctgggctcaagtgatccacccatgtatggcctccc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79824016 292 + 112192347 aataaatgcacaaatatatccaacctcattataataaaagacatTATGtttttagacagggtcttactctgtcactccagctggagtgcagtggtgtgatcatagttcactgcaaccttgacctccacaaggtcaggagatcct-ccacctcagcctcccaagtagctggaactacaggtgtgcaccatcatgtacagctaatttttgcattttttgtagaaatggggtctcactatcacccagcttgtctcaaacccctgggctcaagcgatccactcatgtatggcctccc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80903743 292 + 112612857 aataaatgcacaaatatatccaacctcattataataaaagacatTATGtttttagacagggtcttactctgtcactccagctggagtgcagtggtgtgatcatagttcactgcaaccttgacctccgcaaggtcaggagatcct-ccacctcagcctcccaagtagctggaactacaggtgtgcaccatcatgtacagctaatttttgcattttttgtagaaatggggtctcactattacccagcttgtctcaaacccctgggctcaagcgatccactcatgtatggcctccc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76953194 292 + 107442819 aataaatgcacaaatataTCCAACCACATTATAATAAAAGACATtatgtttttagacagggtcttactctgtcaccccggctggagtgcagtggtgtgatcatagttcactgcaaccttgacctccgcaaggtcaggagatcct-ccacctcagcctcccaagtagctggaactacaggtgtgcaccatcatgtacagctaatttttgcattttttgtagaaatggggtctcactattacCCAgcttgtctcaaacccctgggctcaagcgatccactcatgtatggcctccc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81217648 292 + 108555830 aataaatgcataaatatatccaacctcattataataaaagacattatgtttttagacagggtcttactctgtcaccccggctggagtgcagtggtgtgatcatagttcactgcaaccttgacctccgcaaggtcaggagatcct-ccacctcagcctcacaagtagctggaactacaggtgtgcaccatcatgtacagctaatttttgcattttttgtagaaatggggtctcactattacccatcttgtctcaaacccctgggctcaagcgatccactcatgtatggcctccc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111452440 290 - 210400635 aataaatgcacaaatatatccaatttcattataatcaaagaattt---ttttaagaaagagtcctactgtgacacccaggctagagtgcagtggtgtgatcatagctcactgcagctttgacctccacaagatcaagtgatcctcccacctcagcctcttgagtagctgggattacaggtgtgtaccattatgtacagctgatttttgcattttttctagaaatggaatctcactgttacccagctggtctgaaacccctgggctcaagcgatccacctatgtgtggcctccc i calJac3.chr1 C 0 C 0 e mm10.chr19 38088904 2617 - 61431566 I e canFam3.chr1 35335658 133 - 122678785 I a score=617624.000000 s hg38.chr9_GL383541v1_alt 134090 185 + 171286 aaagtgctttacaag--tgttagccaacacacccagccAAAGAAATCTTAAAAGTAATGAAATAATACATTTGTCTATCA---------AAATATTTTAAAAACATAATACCCTGGAGTATGATGTTTGTATTAATTGCTGTATTTATACTGT--ACTGTTTGTATTGTTCAATTTATGAATTAAAACATAAATCTTT s panTro4.chr9 68699593 187 + 137840987 aaagtgctttacaag--tgttagccaacacacccagccAAAGAAATCTTAAAAGTAATGAAATAATACATTTGTCTATCA---------AAATATTTTAAAAACATAATACCCTGGAGTATGATGTTTATATTAATTGCTGTATTTATACTGTACACTGTTTGTATTGTTCAATTTATGAATTAAAACATAAATCTTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64854791 187 + 135191526 aaagtgctttacaag--tgttagccaacaaacccagccAAAGAAATCTTAAAAGTAATGAAATAATACATTTGTCTATCA---------AAATATTCTAAAAACATAATACCCTGGAGTATGATGTTTATATTAATTGCTGTATTTATACTGTATACTGTTTGtattattcaatttattaattaaaaaataaatCTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57894564 181 - 122973662 aaagtgctttacaag--tgttagccaacacacctagccAAAGAAATCTTAAAAGTAATGAAATAATACATTTGTCTATGA---------AAATATTTTAAAAACATAATACCCTGGAGTATGATGTTTATATTAATTGCTGTATTTATACTGTATACTGTTTGTATTGTTCAATTTATTAATTAAAAAA------TCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79824308 184 + 112192347 aaagtgctttacaag--catcagccaccacacccagcAAAAGAAATCTTAAAAGTAATGAAAGAATACATTTGTCTATCA---------AAATATTTCAAAAAC---ATACCCTGGAGTGTGATGTTTATATTAATTGCTGTATTTATACTGTATACTGTTTGTATTGTTCaatttattaattaaaaaataaatCTTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80904035 187 + 112612857 aaagtgctttacaag--catcagccaccacacccagcAAAAGAAATCTTAAAAGTAATGAAAGAATACATTTGTCTATCA---------AAATATTTCAAAAACATAATACCCTGGAGTGTGATGTTTATATTAATTGCTGTATTTATACTGTATACTGTTTGTATTGTTCAATTTATTAATTAAAAAATAAATCTTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76953486 187 + 107442819 aaagtgctttacaag--catcagccaccacacccagcaaaagaaatcttaaaagtaatgaaagaatacatttgtctatca---------aaatatttcaaaaacataataCCCTGGAGTGTGATGTTTATATTAATTGCTGTATTTATACTGTATACTGTTTGTATTGttcaatttattaattaaaaaataaatcttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81217940 187 + 108555830 aaagtgctttacaag--catcagccaccacacccagcaaaagaaatcttaaaagtaatgaaagaatacatttgtctatca---------aaatatttcaaaaacataataccctggagtgtGATGTTTATATTAATTGCTGTATTTATACTGTATACTGTTTGTATTGTTCAATTTATTAATTAAAAAATAAATCTTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111452730 180 - 210400635 aaagtgctttacaag--cataagccaccacacccagccaaagaaatcttaaaagtaatgaaataatacatttatctatca---------aaATATTTTGAAAATATAGTACCTTGGAATATGATGTTTATATTAATTGCAGTATTTATACTGTATACCATTTGTA---TTCAATTT----ATTAAAAAATAAATCTTT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35335791 198 - 122678785 aaataaatgtacaaatctatccaacttcatttgtagtctgagaaattttaagaattataaaatagcacatttgtctatcaaataggtttaaatattttaaaactataatactcTGGAGTATGCTGTTCCTAATAATAGTTATATCCATACTGTATACTGTTTGTATTGTTCAGCTTGTCAATTAAAAAGTAAATCTTT i canFam3.chr1 I 133 I 243 e mm10.chr19 38088904 2617 - 61431566 I a score=489624.000000 s hg38.chr9_GL383541v1_alt 134275 195 + 171286 CACTTTAGATGCAAG--------TATAAATATATATACCCATTTA----------TATATA-------TACATATAT------------------GCATATTTGGGTCTAAAGTGAAATATTTATTTTTAAATATATATAATATGTAC--ATATATACATATAAATGTTTTCTGGTCTAAGTGAAAGATTTATTTTTCAATATATGTACTATACATA--TGTATACATATTAATGTTT-----TCTA----- s panTro4.chr9 68699780 203 + 137840987 CACTTTAGATGCatg--------tataaatatatatacccattta----------tatata-------tatatatatatatac----------acacatatTTGGGTCTAAAGTGAAatatttatttttaaatatatataatatgtac--atatatacatataaatgttttctggtctaagtgaaagatttatttttcaatatatgtactatacata--tgtatacatatTAACGTTT-----TCTA----- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64854978 199 + 135191526 CACTTTAGATGCatg--------tataaatatatatacccattta----------tatata-------tatatatacatatat------------acatatTTGGGTCTAAAGTGAAAGatttatttttaaatatatataatatgtac--atatatacatataaatgttttctggtctaagtgaaagatttatttttcaatatatgtactatacata----tatacatatTAATGTTT-----TCTG----- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57894745 198 - 122973662 CACTTTAGATGCATG--------TATAA----ATATACCCATTTA----------TATATA-------TACATATAT------------------ACATATTTGGGTCTAAAGTGAAAGATTTATTTTTAAATACATATAATATGTAC--ATATATACATATAAATGTTTTCTGGTCTAAGTGATAGATTTATTTTTCAATATATGTAATATATATGTATACATACATATTAATGTTTTCTAGTCTA----- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79824492 195 + 112192347 CACTTTAGATGCatg--------tataaatatatatacccatttt----------tatata-------tacatatat--------------------atatTTGGGTCTAAAGTGAAAGATTTACTTTtaaatatatataatatgtac--atatgtacatatagatgttttctggtctaagtgaaagatttatttttcaatatatgtaatatatatgtatatatacataCTAATGTTT-----TCTA----- i rheMac3.chr15 C 0 I 5 s macFas5.chr15 80904222 195 + 112612857 CACTTTAGATGCATG--------TATAAATATATATACCCATTTT----------TATATA-------TACATATAT--------------------ATATTTGGGTCTAAAGTGAAAGATTTACTTTTAAATATATATAATATGTAC--ATATGTACATATAGATGTTTTCTGGTCTAAGTGAAAGATTTATTTTTCAATATATGTAATATATATGTATATATACATACTAATGTTT-----TCTA----- i macFas5.chr15 C 0 I 5 s papAnu2.chr15 76953673 191 + 107442819 cacTTTAGatgcatg--------tataaatatatatacccatttt----------tatata-------tacatatat--------------------atatttgggtcTAAAGTGAaagatttacttttaaatatatataatatgtac--atatgtacatataaatgttttctggtctaagt----gatttatttttcaatatatgtaatatatatgtatatatacatactaatGTTT-----TCTA----- i papAnu2.chr15 C 0 I 5 s chlSab2.chr12 81218127 201 + 108555830 CACTTTAGATGCGTG--------TATAAATATATATACCCATTTTtatatatacatatata-------tacatatat--------------------ataTTTGGGTCTAAAGTGAAAGATTTACTTTTAAATATATATAATATGTAC--ATATGTACATATAAATGTTTTCTGGTCTAAGT----GATTTACTTTTCAATATATGTAATATATATGTATATATACATACTAATGTTT-----TCTA----- i chlSab2.chr12 C 0 I 15 s calJac3.chr1 111452910 235 - 210400635 CATTTtagatgcatgtgtgtgtatatatctatatacacccattta----------tatatatgttgtgtatgtatataaatattatattttatatttatatttgggttgaaattgaaagatttatctttaaatatgtgtaatgcatacatatatatacatCTCAATGTTTTCTGGTCTAAGTGAAAGatttatttttaaa-acatataat-tatacatatatatacatatatatGTTT-----TCTGGTCTA i calJac3.chr1 C 0 C 0 e mm10.chr19 38088904 2617 - 61431566 I e canFam3.chr1 35335989 243 - 122678785 I a score=18422.000000 s hg38.chr9_GL383541v1_alt 134470 11 + 171286 AAGTGAAAAAA---- s panTro4.chr9 68699983 11 + 137840987 AAGTGAAAAAA---- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64855177 11 + 135191526 AAGTGaaaaat---- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57894943 11 - 122973662 AAGTGAAAAAT---- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79824692 11 + 112192347 AAGTGACAAAT---- i rheMac3.chr15 I 5 C 0 s macFas5.chr15 80904422 11 + 112612857 AAGTGACAAAT---- i macFas5.chr15 I 5 C 0 s papAnu2.chr15 76953869 11 + 107442819 AAgtgacaaat---- i papAnu2.chr15 I 5 C 0 s calJac3.chr1 111453145 15 - 210400635 AAGTGAAAGATTTAT i calJac3.chr1 C 0 C 0 e mm10.chr19 38088904 2617 - 61431566 I e chlSab2.chr12 81218328 15 + 108555830 I e canFam3.chr1 35335989 243 - 122678785 I a score=135892.000000 s hg38.chr9_GL383541v1_alt 134481 48 + 171286 TTTTTAATTGATAATTGAATAAATAC------ATTCAAATGTACTTATATATGT s panTro4.chr9 68699994 48 + 137840987 TTTTTAATTGATAATTGAATAAATAC------ATTCAAATGTACTtatatatgt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64855188 54 + 135191526 tttttaattaataattgaataaataCATTCAAATTCAAATGTACTtatatatgt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57894954 48 - 122973662 TTTTTAATTGATAATTGAATAAATAC------ATTCAAATATATTTACATATGT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79824703 48 + 112192347 TTTTTAATTGATAATTGAATAAATAC------ATTCAAATGTACATATATATGT i rheMac3.chr15 C 0 I 215 s macFas5.chr15 80904433 48 + 112612857 TTTTTAATTGATAATTGAATAAATAC------ATTCAAATGTACATATATATGT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76953880 48 + 107442819 ttttaaattgataattgaataaatac------attcaaatgtacatatatatgt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81218343 48 + 108555830 TTTTTAATTGATAATTGAATAAGTAC------ATTCAAATGTACATATATATGT i chlSab2.chr12 I 15 C 0 s calJac3.chr1 111453160 46 - 210400635 TTTTTAATTGATAATTGAATAAATAC------AATCAAatgtacatatatgt-- i calJac3.chr1 C 0 C 0 e mm10.chr19 38088904 2617 - 61431566 I e canFam3.chr1 35335989 243 - 122678785 I a score=1054442.000000 s hg38.chr9_GL383541v1_alt 134529 362 + 171286 ATATAcagtcatgtatcacttaatgataaggatacattccaagaaatgtgtttgttaggcaattttgtccttgtgaggatatcatagaatatttatacaaacctagatggtatagcctactacacacctagactgtatggtatagcctatagatcctgggctttaaacctatacagcatgttattgtattaaataatggcaacagttacaacacaatggtaagtatttttgtatctaaacatatctaaagagacagaa-gtacagtaaaaatatggtagtataatcttatggaactaccattgtacatgcagtccatcattgactggaatgtcattatgcagtgtatgactgTATATGTATAT s panTro4.chr9 68700042 362 + 137840987 atatacagtcatgtatcacttaatgataaggatacattccaagaaatgtgtttgttaggcaattttgtccttgtgaggacatcatagaatatttatacaaacctagatggtatagcctactacacacctagactgtatggtatagcctatagatcctgggctttaaacctatacagcatgttattgtattaaataatggcaacagttacaacacaatggtaagtatttttgtatctaaacatatctaaagagacagaa-gtacagtaaaaatatggtagtataatcttatggaactaccattgtacatgcagtccatcattgactggaatgtcattatgcagtgcatgactgtatatgtatat i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64855242 362 + 135191526 atatacagtcatgtatcacttaatgatagggatacattccaagaaatgtgtttgttaggcaattttgtccttgtgaggacatcatagaatatttatacaaacctagatggtataacctactacacacctagactgtacggtatagcctatagatcctgggctttaaacctatacagcatgttattgtattaaataatggcaacagttacaacacaatggtaagtatttgtgtatctaaacatatctaaagagacagaa-gtacagtaaaaatatggtagtataatcttatggaactaccattgtacatgcagtccatcattgactggaatgtcattatgcagtgtatgactgtatatgtatat i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57895002 362 - 122973662 ATATAcagtcatgtatcacttaatgacagggatacattccaagaaatgtgtttgttaggcaattttgtccttgtgaggacatcatagaatatttatacaaacccagatggtataccctactacacacctagactgtatggtatagactattgctcctgggcttcacacctatacaggatgttattgtattaaatactgtcaacagttacaacacagtggtaagtatttgtgtatctaaacatatctaaagagagagaa-gtacagtaaaaatagggtagtataatcttatggaactaccattgtatatgtagtccatcattgactggaatgtcattatgcagtgtatgactgTATATGTATAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79824966 360 + 112192347 aTATAcagtcatgtatcacttaatgacagggatacattccaagaaatgtgtttgttaggcaattttgtccttcagaggacatcatataatatttatacaaacctagatggtatagcctactacacacctagactgtatggtatagcctattgctcctgggttgtaaactcatacagcatgttattgtattaaatactgtcaagagttacaacacaatggtaagtatttgtgtatctaaacatatctaaagagagaaaa-gtacagtaaaaatatggcagtataatcttatggaactaccattgtacatgcagtccatcattgactgaaatgtcattatgcagtgtatgac--tAAATGTATAT i rheMac3.chr15 I 215 C 0 s macFas5.chr15 80904481 360 + 112612857 ATATAcagtcatgtatcacttaatgacagggatacattccaagaaatgtgtttgttaggcaattttgtccttcagaggacatcatataatatttatacaaacctagatggtatagcctactacacacctagactgtatggtatagcctattgctcctgggttgtaaactcatacagcatgttattgtattaaatactgtcaagagttacaacacaatggtaagtatttgtgtatctaaacatatctaaagagagaaaa-gtacagtaaaaatatggcagtataatcttatggaactaccattgtacatgcagtccatcattgactgaaatgtcattatgcagtgtatgac--tAAATGTATAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76953928 360 + 107442819 atatacagtcatgtatcacttaatgacagggatacattccaagaaatgtgtttgttaggcaattttgtcctTCAGAGGACATCATATAATatttatacaaacctagatggtatagcctactacacacctagactgtatggtatagcctattgctcctgcGTTGTAAACTCATACAGCATGTTATTGTATTAAATACTGTCAAGAGTTACAACACaatagtaagtatttgtgtacctaaacatatctaaagagagaaaa-gtacagtaaaaatatggcagTATAGTCTTATGGAACTACCATTGTAcatgcagtccatcattgactgaaatgtcattatgcagtgtatgac--taaatgtatat i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81218391 349 + 108555830 ATATAcagtcatgtatcacttaatgacagggatacatcccaagaaatgtgttttttaggcaattttgtccttcagaggacatcatataatatttatacaaacctagatggtatagcctactacacacctagactgtatggtatagcctattgctcctgggttgtaaactcatacagcatgttattgtattaaatactgtcaagagttacaacacaatg----gtatttgtgtatctaaacatatctaaagagagaaaa-gtacagtaaaaatttggcagtataatcttatggaactaccattgtacatgcagtccatcat----tgaaatgtc---atgcagtgtatgac--tAAATGTATAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111453206 351 - 210400635 atatacagtcatgtatcacttaatcacagggatacattccaagaaatgtgtttgttaagcaattttgtccttgtgaggacatc-----atatttatacaaacctaggtggaatagcctactacacacctagactgtatggtatagcctattgctcctgggctgtaaatctgtacagcatgctattgtact-gatactgtcaacaattgcaacacaatggtaagtatttgtgtatctaaacatatctaaagatagaaaatgtacagtaaaaatatggtagtataatctcatgggaccaccattgtacatgcagtccatcat----tgaaacatcattatgtagtgtatgac--tatatgtatat i calJac3.chr1 C 0 C 0 e mm10.chr19 38088904 2617 - 61431566 I e canFam3.chr1 35335989 243 - 122678785 I a score=572786.000000 s hg38.chr9_GL383541v1_alt 134891 211 + 171286 ATATAAACATATATGTGTGCATGCATAAT----acacacacacacacacac---acacacacacacacacacacGTATAACATTACCCTGGAAAggtgaggatgcaaggaaataaggattatcatgtgctcttatatgagggtaaattggc-acaatgtttt--aataacaatttaattacatgaataaaaaaggaagcgctcaaacatgcatac-------tttatt-- s panTro4.chr9 68700404 205 + 137840987 atataaacatatatGTGTGCATGCATAAT----------acacacacacac---acacacacacacacacacacGTATAACATTACCCTGGAAAggtgaggatgcaaggaaataaggattatcatgtgctcttatatgagggtaaattggc-acaatgtttt--aataacaatttaattacatgaataaaaaaggaagcgctcaaacatgcatac-------tttact-- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64855604 197 + 135191526 atataaacatatatGTGTGCATGCATAAT------------------acac---acacacacacacacacacacGTATAACATTACCCTGGAAAggtgaggatgcaaggaaataaggattatcatgtgctcttatatgagggtaaattggc-acaatgtttt--aataacaatttaattacatgaataaaataggaagcgctcaaacatgcatac-------tttatg-- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57895364 210 - 122973662 ATATAAAC--ATATGTGTGCATGCATAATacacacacacatacacacacac---acacgcacccacacacaTACATATAACATTACCCTGGAAAggtgaggacgcaaggaaataaggattatcatgtgctcttatatgagggtaaattggc-acaatgtttt--aataacaatttaattacatgaataaaaa---aagcactcaaacacgcatac-------tttatg-- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79825326 185 + 112192347 ATATAAACATATATGTGTGCATGCATAAT---------------------------------GCGCGCACACACACATAACATTACCCTGGAAAggtgaggatgcaaggaaataaggattatcatgtgctcttatatgagggtaaattggc-acaatgttct--aataaaaatttaattacatgaatcaaaaagaaagcactcaaacatgcatac-------tttatg-- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80904841 185 + 112612857 ATATAAACATATATGTGTGCATGCATAAT---------------------------------GCGCGCACACACACATAACATTACCCTGGAAAggtgaggatgcaaggaaataaggattatcatgtgctcttatatgagggtaaattggc-acaatgttct--aataaaaatttaattacatgaatcaaaaagaaagcactcaaacatgcatac-------tttatg-- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76954288 185 + 107442819 atataaacatatatgtgtgcatgcataat---------------------------------gcacgcacacacacataacatTACCCTGGAAAGGTGAGGATGCAAGGAAATAAGGATTATCATGTGCTCTTATATTAGGGTAAATTGGC-acaatgtttt--aataaaaatttaattacatgAATCAAAAAGAAAGCACTCAAACATGCATAC-------TTTATG-- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81218740 185 + 108555830 ATATAAACATGTATGTGAGCATGCATAAT---------------------------------GCGCGCACACACACATAACATTACCCTGGAAAggtgaggatgcaaggaaataaggattatcatgtgctcttatatgagggtaaattggc-acaatgtttt--aataaagatttaattacatgaatcaaaaagaaagcgctcaaacatgcatac-------tttatg-- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111453557 191 - 210400635 atataAAAACA----TGTGCATGCACAAT----------------acacac---acacacacacccacacacacacaTAACATGACCCTGGAAAggtgaggatgcaaggaaatgaggattatcgtgtggtcttatatgagggtaaactgct-acaatgtttt--aataacaatttaatttcatgaatcaaa----aagcactcaaacaggcatat-------tttatg-- i calJac3.chr1 C 0 C 0 s canFam3.chr1 35336232 220 - 122678785 atatatgtatatatgcatatatgagtcat----------atctatgaatacttaaaatatatatatatataaataAAACACATTATCCCAGAAAggtaaggatgcaaggaaataaggattttcataaactttagtatgaagatacattgataataatatttctagatgacaattaaattacatgtctcaaaaagaaagcccccaaacatgaatacagttttgtttttgtt i canFam3.chr1 I 243 I 170 e mm10.chr19 38088904 2617 - 61431566 I a score=2172162.000000 s hg38.chr9_GL383541v1_alt 135102 645 + 171286 acataacaattctacatctagggatttatcataaggaaataatcatggttatgcacaaagatttagctataatcgttcattccagtaatatttataatactgagagagtggaaactaccatattgtctattattaggggttggttaaataaGTGTGGCATAGGTTAAAAAGGGGTAAGAGTTACGTAAGCTTTAAACTGCAGCTCTTCTTCACTTCATGGATCTACACTTTGGCTTGGGAATCAATGAAAATCAGGCT----AATTGCCTCTATGTCTCAGAGGTGGGTAGGGCAAAGTCAGCATTCT-------TATTAGCAGAGGATTGCTAAAAGTGCTTGCTGTCTTCTTCAGG-CCCAGGAGGGGTTCATCTAGAGCAGAGTGAGCCCTTGAGAGGCAAGAGGAGGACCTAGATTCTTC-CTTTTTGCTGTTTGTGGATTGCATTCTATAAATCTATCTTCTGGCAGGACTGACGTTTTTGTAAC----TCCAAGTGAGCCACAACAATGACTCCA-ATTATAATGCCTGTCCTTGGacatgacaattaaattggt-ctttacattttattacattacattTGTCAGGGCAGTGTTTGACCAGGAGAACTCCCTA---TGGGAGGTGGGCCAGAGAGAAACCA-CATTGTATTTTTAGCCCAG s panTro4.chr9 68700609 645 + 137840987 acataacaattctacatctagggatttatcataaggaaataatcatggttatgcacaaagatttagctgtaatcattcattccagtaatatttataatactgagagagtggaaactaccatattgtctgttattaggggttggttaaataaGTGTGGCATAGGTTAAAAAGGGGTAAGAGTTATGTAAGCTTTAAACTGCAGCTCTTCTTCACTTCATGGATCTACACTTTGGCTTGGGAATCAATGAAAATCAGGCT----AATTGCCTCTATGTCTCAGAGGTGGGTAGGGCAAAGTCAGCATTCT-------TACTAGCAGAGGATTGCTAAAAGTGCTTGCTGTCTTCTTCAGG-CCCAGGAGGGGTTCATCTAGAGCAGAGTGAGCCCTTGAGAGGCAAGAGGAGGACCTAGATTCTTC-CTTTTTGCTGTTTGTGGATTGCATTCTATAAATCTATCTTCTGGCAGGACTGACCTTTTTGTAAC----TCCAAGTGAGCCACAACAATGACTCCA-ATTATAATGCCTATCCTTGGACATGACAATTAAATTGGT-CTTTACATTTTATTACATTACATTTGTCAGGGCAGTGTTTGACCAGAAGAACTCCCTA---TGGGAGGTGGGCCAGAGAGAAACCA-CATTGTATTTTTAGCCCAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64855801 651 + 135191526 acataacaattctacatctagggatttatcataaggaaataatcatggttatgcacaaagatttagctataatcgttcattccagtaatatttataatactgagagagtggaaattaccgtattgtctgttattaggggttggttaaataaGTGTGGCATAGGTTAAAAAGGGGTAAGAGTTATGTAAGCTTTAAACTGCAGCTCTTCTTCACTTTATGGATCTACACTTTGGCTTGGGAATCAATGAAAATCAGGCT----AATTGCCTCTACGTCTCAGAGGTGGGTAGGGCAAAGTCAGCATTCT-------TATTAGCAGAGGATTGCTAAAAGTGCCTCCTGTCTTCTTCAGG-CCCAGGAGGGGTTCATCTAGAGCCGAGTGAGCCCTTGAGAGGCAAGAGGAGGACCTAGATTCTTCTTTTTTTGCTGTTTGTGGATTGCATTCTATAAATCTATCTTCTGGCAGGACTGACCTTTTTGTAACTCCATCCAAGTGAGCCACAACAATGACTCCA-ATTATAATGCCTATCCTTGGACATGACAATTAAATTGGTCCTTTACATTTTATTACATTACATTTGTCAGGGCAGTGTTTGACCAGGAGAACTCCCTA---TGGGAGGTGGGCCAGAGAGAAACCA-CATTGTATTTTTACCCCAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57895574 650 - 122973662 acataacaattctacatctagggatttatcataaggaaataatcatggttatgaacaaagatttagctataatcgttcattccagtaatatttgtaatactgagaaagtggaaactactgtattgtctgttattaggggttggttaaataaGTGTGGCATAGGTTAAAAAGGGGTAAGAGTTATGTAAGCTTTAAACTGCAGCTCTTCTTCACCTCATGGATCTACACTTTGGCTTGGGAATCAATGAAAATCAGGCT----AATTGCCTCTATGTCTCAGAGGTGGGTAGGGCAAAGTCAGCATTCT-------TATTAGCAGAGGATTGCTAAAAGTGCCTGCTGTCTTCTTCGGG-CCCAGGAGGGGTTCATCTAGAGCAGAGTGAGCCCTTGAGAGGCAAGAGGAAGACCTGGATTCTTCCTTTTTTGCTGTTTGTGGATTGCATTCTATAAATCTATATTCTGGCAGGACTGACTTTTTTGTAACTCCATCCAAGTGAGCCACAACAATGACTCCA-ATTATAATGCCTATCCTTGGGCATGACAATTAAATTGGT-CTTTACATTTTATTACATTACATTTGTCAGGGAAGTGTTTGACCAGGAGAACTCCCTA---TGGGAGGTGGGCCAGAGAGAAATCA-CATTGTATGTTTACCCCAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79825511 650 + 112192347 acataacaattctacatctagggatttatcataaggaaataatcatggttatgcacaaagatttagctatcatcattcattccagtaatatttgtaatactgagaaagtggaaactaccatattgtctgttattaggagttggttaaataagtGTGGCATAGGTTAAAAAGGGGTAAGAGTTATGTAAGCTTTAAACTGCAGCTCTTCTTCACCTCATGGATCTACACTTTGGCTTGGGAATGAATGAAAATCAGGCT----AATTGTCTCTAtgtctcagaggtgggtagggcaaagtcagcattct-------tattAGCAGAGGATTGCTAAAAGTGCCTGCTGTCTTCTTCAGG-CTCAGGAGGGGTTCATCTAGAGCAGATTGAGCCCTTGAGAGGCAAGAGGAAGACCTAGATTCTTCCTTTTCTGCTGCTTGTGAATTGCATTCTATAAATCTATCTTCTGGTAGGACTGACCTTTTTGTAACTCCATCCAAGTGAGCCACAACAATGACTCCA-ATTATAATGTCTATCCTTGGACATGACAATTAAATTGGT-CTTTACATTTTATTACATTACATTGGTCAGGGAAGTGTTTAACCAGGGGAACTCCCTA---TGGAAGGTGGGCCGGAGAGAAATCA-CATTGTATGTTTACCCCAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80905026 650 + 112612857 acataacaattctacatctagggatttatcataaggaaataatcatggttatgcacaaagatttagctatcatcattcattccagtaatatttgtaatactgagaaagtggaaactaccatattgtctgttattaggagttggttaaataaGTGTGGCATAGGTTAAAAAGGGGTAAGAGTTACGTAAGCTTTAAACTGCAGCTCTTCTTCACCTCATGGATCTACACTTTGGCTTGGGAATGAATGAAAATCAGGCT----AATTGTCTCTATGTCTCAGAGGTGGGTAGGGCAAAGTCAGCATTCT-------TATTAGCAGAGGATTGCTAAAAGTGCCTGCTGTCTTCTTCAGG-CTCAGGAGGGGTTCATCTAGAGCAGATTGAGCCCTTGAGAGGCAAGAGGAAGACCTAGATTCTTCCTTTTCTGCTGCTTGTGAATTGCATTCTATAAATCTATCTTCTGGTAGGACTGACCTTTTTGTAACTCCATCCAAGTGAGCCACAACAATGACTCCA-ATTATAATGTCTATCCTTGGacatgacaattaaattggt-ctttacattttattacattacattGGTCAGGGAAGTGTTTAACCAGGGGAACTCCCTA---TGGAAGATGGGCCGGAGAGAAATCA-CATTGTATGTTTACCCCAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76954473 650 + 107442819 ACATAACAATTCTACATCTAGGGATTTATCATAAGGAAATAATCATGGTTATGCACAAAGATTTAGCTATCATCATTCATTCCAGTAATATTTGTAATACTGAGAAAGTGGAAACTACCATATTGTCTGTTATTAGGAGTTGGTTAAATAAGTGTGGCATAGGTTAAAAACGGGTAAGAGTTATGTAAGCTTTAAACTGCAGCTCTTCTTCACCTCATGGATCTACACTTTGGCTTGGGAATCAATGAAAATCAGGCT----AATTGTCTCTATGTCTCAGAGGTGGGTAGGGCAAAGTCAGCATTCT-------TATTAGCAGAGGATTGCTAAAAGTGCCTGCTGTCTTCTTCAGG-CTCAGGAGGGGTTCATCTAGAGCAGAGTGAGCCCTTGAGAGGCAAGAGGAAGACCTAGATTCTTCCTTTTCTGCTGTTTGTGAATTGCATTCTATAAATCTATCTTCTGGTAGGACTGACCTTTTTGTAACTCCATCCAAGTGAGCCACAACAATGACTCCA-ATTATAATGTCTATCCTTGGACATGACAATTAAAttggt-ctttacattttattacattaCATTGGTCAGGGAAGTGTTTGACCAGGGGAACTCCCTA---TGGGAGGTGGGCCAGAAAGAAATCA-CATTGTATGTTTACCCCag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81218925 650 + 108555830 acataacaattctacatctagggatttatcataaggaaataatcatggttatgcacaaagatttagctatcatcattcattccagtaatatctgtaatactgagaaagtggaaactaccatattgtctgttattaggagttggttaaataagtGTGGCATAGGTTAAAAAGGGGTAAGAGTTATGTAAGCTTTAAACTGCAGCTCTTCTTCACCTCATGGATCTACACTTTGGCTTGGGAATCAGTGAAAATCAGGCT----AATTGTCTCTATGTCTCAGAGGTGGGTAGGGCAAAGTCAGCATTCT-------TACTAGCAGAGGATTGCTAAAAGTGCCTGCTGTCTTCTTCAGG-CTCAGGAGGGGTTCATCTAGAGCAGAGTGAGTCCTTGAGAGGCAAGAGGAAGACCTAGATTCTTCCTTTTCTGCTGTTTGTGAATTGCATTCTATGAATCTATCTTCTGGTAGGACTGACCTTTTTGTAACTCCATCCAAGTGAGCCACAACAATGACTCCA-ATTACAATGTCTATCCTTGGacatgacaattaaattagt-ctttacattgtattatattacattGGTCAGGGAAGTGTTTGACCAGGGGAACTCCCTA---TGGGAGGTGGGCCAGAGAGAAATCA-CATTGTATGTTTACCCCAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111453748 623 - 210400635 acat---aattctacatctagggatttat--taaggaactaatcatggttatgcacaaagatttagctatcatcattcattccagtaatattt-taatactgagacagtgaaaactaccatattgtctgttattaggggttggttaaataagtGTGGCATAGGTTAAAAAGGGGTTAGAGTTATGTAAGCTTTAGACTATGGCTCTGCTTCACTTCACAGATACACACTTTGGCTTGGGAATCCATGAAAATTAGACT----AACTGTCTCTAT--------GGTGAGAGGGACAAAGTCAGTATCCTGTTTGAGTATTAGCAGAGAATTGCTAAAA-------------------GA-CCCAGAA---GTTCATCTAGAGCAGAGTGAGCCCTTGCAACGCAAGAGGAAGACTTAGATTCTTC-CTTTTTGCTGTTTGTGGATTGCATTCTATGTATCTATCTTCTGGCAGGACTGATCTTTTTGTATCTCCATCCAAGTGAGCCACAACAATGACTTCA-ATGGTAATGCCTATTCTGGGACATGACAATTAAATAGGT-CTTTACATTTTATTACATTATATTGGTCAGGAAAGTGTTCCCCCAGGGCAATGCCTTATAGTGGGAGGTGGGCCAGAGAGAAACCA-CATTGTATGTTTATCCCAG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35336622 609 - 122678785 acgcaacaattctgcttcttggaatttaccctaaggaatgaatcacggttatgcacaaagatttaaataccaatattcctcatagcagtatgtataatactaagaaattagaaactgcccaattttccatcagtaggagttggtcacataggt-tggggcaggctacaaagggcttagtgttatgcaagctttaaaCCACAGCCCTTCATCCAGTCATGGATCTACACTTTGCCTTGGGAATCAGTGAAAATCAGGCCAAAAAACTGTCTCCCTATCTCAGACATGAGTAGAGCAAAGTCAGTATTCC-------TGCT---TGGGTATTAC----GGTACCAGCTGTCCTCTCCTGACCCCAGGAGAAGT---TCCAGAGCAGGG-------CTGAAGGTCAGGATAAAGACCTAGATTCTTCCTTGTTTGTTGTTTCTTGACTGCACTCTGTG----CGTCTTCTGGTAGAACTGGCGTTTTTACATCTCCATCCAAGTAACCTACAACAATAGCTCCATAGTGTGATGTCC----------------ATTAAATTGGC-CATTAC-----CTTAAATTGCGTGGGTTAGGGAAGGGTTCAACCAAGGGTCCTTCCTG---AGGGAAG-GGGCCAGAGATCAACCAGCAT----TTTTTTGTTCAG i canFam3.chr1 I 170 C 0 e mm10.chr19 38088904 2617 - 61431566 I a score=1088704.000000 s hg38.chr9_GL383541v1_alt 135747 386 + 171286 CACTGA-TTTTTTT------TACACAAAATCACAGGCAGCCCGGAGGCCTATTAGAAATCACCAGACTggctgggcacggtgactcacacctgtaatcccagcactttgggagggtgaggcagacagatcacttgaggccaggagatcaagaccagcctggccaacatggtaagaccc------------------------tg----tctctactaaaagtaaaaaaattcgcaaggcatggtggcgcatgcttgtaatcccagctactcaggaggctgagacacgagaatccctcgaatccaggagggagaggttgcagtgagccgtgattgcgctactgcactctagcctgggcaacagagggagaccctgtctc------------------cagaaaaaaaaaagaacaaaaaa--------CAGAAGTCACCAGATGGTCA s panTro4.chr9 68701254 386 + 137840987 CACTGA-TTTTTTT------TACACAAAATCACAGGCAGCCCGGAGGCCTATTAGAAATCACCAGACTggctgggcacagtgactcacacctgtaatcccagcactttgggagggtgaggcagacagatgacttgaggccaggagatcaagaccagcctggccaacatggtaagaccc------------------------tg----tctctactaaaagtaaaaaaattcgcaaggcatggtggcgcatgcttgtaatcccagctactcaggaggctgagatacgagaatccctcgaatccaggagggagaggttgcagtgagccgtgattgcgctactgcactctagcctgggcaacagagggagaccctgtctc------------------cagaaaaaaaaaagaataaaaaa--------CAGAAGTCACCAGATGGTCA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64856452 394 + 135191526 CACTGA-TTTTTTT------TACACAAAATCACAGGCAGCCCAGAGGCCTATTAGAAATCACCAGACTggctgggcacggtgactcacacctgtaatcccagcactttgggagggtgaggcagacagattacttgaggccaggagatcaagaccagcctggccaacatggtaagaccc------------------------tg----tctctactgaaactaaaaaaattcgccaggcatggtggcgcatgcttgtaatcccagctactcaggaggctgagacacgagaatcccttgaatccaggagggagaggttgcagtgagccgtgattgtgctactgcactctagcccgggcaacagagggagaccctgtctc------------------aaaaaaaaaaaaaaaaaaagaaaaaaaaaaCCACAAGTCACCAGATGGTCA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57896224 420 - 122973662 CATTGA-TTTTTTT------TACACAAAATCACAGGCAGCCTGGAGGCCTATTAGAAATCACCAGACTggctgggcacagtgactcacacctgtaatcccagcactttgggagggtgaggcagacagatcacttgaggccaggagatcaagaccagcctggccaacagggtgagacccatgttggagatactatggctggtttgacattctctactaaaagtaaaaaaattagccaggcatggtggtgcatgcctgtaatcccagctactcaggaggctgagacatgagaatcccttgaatccaggagggagaggttgcagtgaaccatgattgcgccactgcactctagcccatgcaatagagtgagaccctgtttc------------------aggaaaaaaaaaaaaaaaaaacaaaaaaa--CAGAAGTCACCAGATGGTCA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79826161 402 + 112192347 CACTGA-TTTTTTT------TACACAAAATCACAAGCAGCCTGGAGACCTATTAGAAATCACCAGACTggccgggtacggtgactcacacctgtaatcccagcactttgggaaggtgaggcagacagatcacttgaggccaggagttcaagaccaggctggccaacatggt-ggaccc------------------------tg----tctctactaaaagtaaaaaaattagccaggcatggtggcgcatgcctgtaatcccagctactcaggaggctgagacatgagaatcccttgaatccagcagggacaggttgcaatgagctgtgattgtgccactgcactctagcccaggcaatagagtgagactctgtctcaaaacaaaaacaaaaacaaaaacaaaaacaaaaacaaaaa---------caGAGGTCACCAGATGGTCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80905676 384 + 112612857 CACTGA-TTTTTTT------TACACAAAATCACAAGCAGCCTGGAGACCTATTAGAAATCACCAGACTggccgggtacggtgactcacacctgtaatcccagcactttgggaaggtgaggcagacagatcacttgaggccaggagttcaagaccaggctggccaacatggt-ggaccc------------------------tg----tctctactaaaagtaaaaaaattagccaggcatggtggcgcatgcctgtaatcccagctactcaggaggctgagacatgagaatcccttgaatccagcagggacaggttgcaatgagctgtgattgtgccactgcactctagcccaggcaatagagtgagactctgtctc------------------aaaacaaaaacaaaaacaaaaa---------CAGAGGTCACCAGATGGTCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76955123 384 + 107442819 cactga-ttttttt------aatacaaaatcacAGGCAGCCTGGAGACCTATTAGAAATCACCAGACTGgccgggtacagtgactcacacctataatcccagcactttgggaaggtgaggcagacagatcacttgaggccaggagttcaagaccaggctggccaacatggtgggaccc------------------------tg----tctctactaaaagtaaaaaaattagccaggcatggtggcgcatgcctgtaatcccagctactcaggaggctgagacatgagaatcccttgaatccagcagggacaggttgcaatgagctgtgattgtgccactgcactctagcccaggcaatagagtgagactctgtctc------------------aaaaaaaacaaacaaacaaaaa----------acaggtcaCCAGACGGTCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81219575 382 + 108555830 CACTGAGTTTTTTT------TACACAAAATCACAGGCAGCCTGGAGACCTATTAGAAATCACCAGACTggctgggcacagtgactcacacctgtaatcccagcactttgggagggtgaggcagacagatcacttgagaccaggagttcaagaccaggctggccaacatagtaggaccc------------------------tg----tctctactaaaagtaaaaaaattagccaggcatggtggcgcatgcctgtaatcccagctactcaggaggctgagacatgagaatcccttgaatccagtagtgacaggttgcaatgagctgtgattgtgccactgcactctagcccaggcaacagagtgagaccctgtctc------------------aaaaaaaaaaaaaaaaaaa-------------aGAGGTCACCAGACGGTCA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111454371 385 - 210400635 CACTGA-TTTTTTTTTTTAATATACAAAATCATAGGCAGCCTGGAGGCCTATTAAAAATCACCAGACTggctgggcactgtgactcatacctgtaatcccagaactttgggagggtgaggtgggcaaatcacttgaggccaggagttcaagaccagcctggccaacatgatgaaaccc------------------------tg----tttctactaaaagtaaaaaaattagccaggcatggtggcacatgcctgtaatcccatctactcaggaggttgagacatgagaattctttgaacccaagaagcagagattgcagtgagctgagattgcaccactatactctaggccaggcaacaaagcaagaccctgtctc------------------aaaaaaaaaaaaaaaa---------------aaGTAGTCACTAGACGGTCA i calJac3.chr1 C 0 C 0 e mm10.chr19 38088904 2617 - 61431566 I e canFam3.chr1 35337231 0 - 122678785 C a score=504165.000000 s hg38.chr9_GL383541v1_alt 136133 144 + 171286 CCTGC---CC---TCTTGAGGAGTACATGTAAAAATCAGGAAGGCATTTGCACC-TATTTTCCTTCAGTGATAATGAAAGCTTTATGGGGTAATTAAATATAATAATGTCTTCATTATTAGGGTGGGGAA--------TTAGAGACTAAAACATTAAAA s panTro4.chr9 68701640 144 + 137840987 CCTGC---CC---TCTTGAGGAGTACATGTAAAAATCAGGAAGGCATTTGCACC-TATTTTCCTTCAGTGATAATGAAAGCTTTATGGGGTAATTAAATATAATAATGTCTTCATTATTAGGGTGGGGAA--------TTAGAGACTAAAACATTAAAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64856846 144 + 135191526 CCTGC---CC---TCTTGAGGAGTACATGTAAAAATCAGGAAGGCATTTGCACC-TATTTTCCTTCAGCGATAATGAAAGCTTTATGGGGTAATGAAATATAATAATGTCTTTATTATTAGGGTGGGGAA--------TTAGAGACTAAAACATTAAAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57896644 144 - 122973662 CCTGC---CC---TTTTGAGGAGAACATGTAAAAATCAGGAAGGCATTTGCACC-TATTTTCCTTCAGTGATAATGAAAGCTTTATGGGGTAATTAAATATAATAACGTCTTCATTAGTAGGGTGGGGAA--------TTAGAGACTAAAACATTAAAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79826563 144 + 112192347 CCTGC---CC---TCTTGAGGAGTACATGTAAAAATCAGGAAGGCATTTGCACC-TATTTTCCTTCAGTGATAATGAAAGCTTTATGGGGTAATGAAATATAATAATGTCTTCATTATTAGGGTGTGGAA--------TTAGAGACTAAAACATTAAAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80906060 144 + 112612857 CCTGC---CC---TCTTGAGGAGTACATGTAAAAATCAGGAAGGCATTTGCACC-TATTTTCCTTCAGCGATAATGAAAGCTTTATGGGGTAATGAAATATAATAATGTCTTCATTATTAGGGTGTGGAA--------TTAGAGACTAAAACATTAAAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76955507 144 + 107442819 CCTGC---CC---TCTTGAGGAGTACATGTAAAAATCAGGAAGGCATTTGCACC-TATTTTCCTTCAGTGATAATGAAAGCTTTATGGGGTAATGAAATATAATAATGTCTTCATTATTAGGGTGTGGAA--------TTAGagactaaaacattaaaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81219957 141 + 108555830 CCTGC---CC---TCTTGAGGAGTACATGTAAAAATCAGGAAGGCATTTGCACC-TATTTTCTTTCAGTGATAATGAAAGCTTTATGGGGTAATGAAAT---ATAATGTATTCATTATTAGGGTGTGGAA--------TTAGAGACTAAAACATTAAAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111454756 155 - 210400635 CCTGC---CCTCTTCTTGAGGAGTACGTGTAAAAATCAGGAAGGCATTTGCACC-TATTTTCCTTCAGTGATAATGAAAGCTTTATGGGATAATTAAATATAAAAATGTCTTCATTATTAGAGTGTGAAATTAGACACTTAGACACTAAAACATTAAAA i calJac3.chr1 C 0 C 0 s canFam3.chr1 35337231 147 - 122678785 CCTGCCTGCC---TGCTGACGAGAGTATATAAAAAGCAGGAAGGCATTCACACCTTATTTCCCTTCAGTGATAATGAGTGACTGATGGGATAAATATATAGAACAGTGTCCTCTTTATTAGGGTGTG-AG--------TCAGACCCTAAAACACTGACA i canFam3.chr1 C 0 I 210 e mm10.chr19 38088904 2617 - 61431566 I a score=441457.000000 s hg38.chr9_GL383541v1_alt 136277 137 + 171286 ATGATGTC-----AGCTTTGTCTAATGTTCATTTTTTTCAGAGGTTTTTCTCATTTATTTTCCACTTGCATCTTCAACATTAATTGTGTAGGATTAGTCTTCTCTGTCCCACCATGAAAAGAACATGAACTTTGCAATCAGA s panTro4.chr9 68701784 142 + 137840987 ATGATGTCATCTTAGCTTTGTCTAATGTTCATTTTTTTCAGAGGTTTTTCTCATTTATTTTCCACTTGCATCTTCAACATTAATTGTGTAGGATTAGTCTTCTCTGTCCCACCATGAAAAGAACATGAACTTTGTAATCAGA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64856990 137 + 135191526 ATGATGTC-----AGCTTTGTCTAATATTCATTTTTTTCAGAGGCTTTTCTCATTTATTTTCCACTTGCATCTTCAACATTAATTGTGTAGGATTAGTCTTCTCTGTCCCACCATGAGAAGAACATGAACTTTGTAATCAGA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57896788 142 - 122973662 ATGATGTCATCTTAGCTTTGTCTACTGTTCATTTTTTCAGAGGCTTTTTCTCATTTATTTTCCACTTGCATCTTCAACATTAATTGTGTAGGATTAGTCTTCTCTGTCCCACCATGAAAAGAACATGAATTTTGTAATCAGA i nomLeu3.chr1a C 0 I 130 s rheMac3.chr15 79826707 137 + 112192347 ---ATGTC-TCTTAGCTTTGTCTAATATTCA-TTTTTTCAGAGGCTTTTCTCATTTACTTTCCACTTGCATCTTCGACATTAATCGTGTAGGAATAGTCTTCTCTGTCTCACCATGAAAAGAACATGAACTTTGTAATCAGA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80906204 137 + 112612857 ---ATGTC-TCTTAGCTTTGTCTAATATTCA-TTTTTTCAGAGGCTTTTCTCATTTACTTTCCACTTGCATCTTCGACATTAATCGTGTAGGAATAGTCTTCTCTGTCTCACCATGAAAAGAACATGAACTTTGTAATCAGA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76955651 138 + 107442819 ---atgtc-tcTTAGCTTTGtctaatattcatttttttcagaggCTTTTCTCATTTACTTTCCACTTGCATCTTCGACATTAATTGTGTAGGAATAGTCTTCTCTGTCCCACCATGAAAAGAACATGAACTTTGTAATCAGA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81220098 135 + 108555830 ---ATGTC-TCTTAGCTTTGTCTAATATTCATTTTTTTCAGAGGCTTTTCTCATTTACTTTCCACTT-CATCTTCAACATTAATCGTGTAGGA--AGTCTTCTCTGTCCCACCATGAAAAGAACATGAACTTTGTAATCAGA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111454911 141 - 210400635 ATGATGTCGTCTTAGCTTTGTCTAATGTTCA-TTTTTTCAGAGGCTTTTCTCATTTATTTTCCACTTGCATTTTCAACATTAATTGTGTAGGATTAGTATTCTCTGTCCCACCATGAAAAGAACAAGAACTTTGTAATcaga i calJac3.chr1 C 0 C 0 s canFam3.chr1 35337588 129 - 122678785 ---------ATCTACCTTTGTCTAACGTTCA-TTTTTCCAGAGGCCTCTCACATTTATTTTCCATTTGGATCCTCAATATTAATTGTGTA-GATTAGGCAT-TGTGTCCC-cagtgggaagaccagaaatttaagagtcaga i canFam3.chr1 I 210 C 0 e mm10.chr19 38088904 2617 - 61431566 I a score=239330.000000 s hg38.chr9_GL383541v1_alt 136414 92 + 171286 CACACTTTGCTCTCAAAAC-AAGGGGGAAAAGTGAAAATGGGTGCAAGTGAAGATAAGGGTGTAGATGTGGATGTCGGAGAAGCTGTGAGCAT s panTro4.chr9 68701926 92 + 137840987 CACACTTTGCTCTCAAAAC-AAGGGGGAAAAGTGAAAATGGGTGCAAGTGAAGATAAGGGTGTAGATGTGGATGTCGGAGAAGCTGTGAGCAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64857127 92 + 135191526 CACACTTTGCTCTCAAAAC-AAGGGGGAAAAGTGAAAATGGGTGCAAGTGAAGATGAGGGTGTAGATGTGGATGTTGGAGAAGCTGTGAGCAT i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79826844 92 + 112192347 CAGACTTTGCTCTCAAAAC-AAGGGAGGGAAGTGAAAATGGGTACAAGTGAAGATGAGGGTGTAGATGTGGATGTCAGGGAAGCTGTGAGCAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80906341 92 + 112612857 CAGACTTTGCTCTCAAAAC-AAGGGAGGGAAGTGAAAATGGGTACAAGTGAAGATGAGGGTGTAGATGTGGATGTCAGGGAAGCTGTGAGCAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76955789 92 + 107442819 CAGACTTTGCTCTCAAAAC-AAGGGAGGGAAGTGAAAATGGGTACAAGTGAAGATGAGGGTGTAGATGTGGATGTCAGGGAAGCTGTGAGCAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81220233 92 + 108555830 CAGACTTTGCTCTCAAAAC-AAGGGAGGGAAGTGAAAATGGGTACAAGTGAAGATGAGGGTATAGATGTGGGTGTCAGGGAAGCTGTGAGCAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111455052 90 - 210400635 cagactttactctcaaaac-aaggg-ggaaggtgaaaatgtgtgcaaatgaagatgagggtgtagatgtggatgtcggcgaagttgtgagtt- i calJac3.chr1 C 0 C 0 s canFam3.chr1 35337717 91 - 122678785 cagaccttgcttcCCAAACAAAGGGAAGGGAATGAAAACAAGTGCAAATGAAGCTAAGGTGGGAGGTGTGGCTGT--GGGGAGTTGAAAACAT i canFam3.chr1 C 0 C 0 e mm10.chr19 38088904 2617 - 61431566 I e nomLeu3.chr1a 57896930 130 - 122973662 I a score=890040.000000 s hg38.chr9_GL383541v1_alt 136506 309 + 171286 TCTTTCTGGGGGGCCTACATTTTCAGCGCAGAGCAGGGCAGTGATGTCTTCGGCTAAGG----------GTGAGAAGGACG-TGGCTGAGGTGAGGGAAGAGCTGCTGTGGAAAGGAGGAGATACTATGGCTGGTTCGACATTAGCCAGTTCTGAAAATCAGCCACAATCTATGTAAGAGTCAGGCTCCTGTGCTGAGT-----TACC---------AAAATACTCCATCAACAAACGTAAGGCAAAATGACAGGAAGC---TTGTAAACACAAGTCAAAGAAATGTTTGGTCCCATGCTATTAACTGGGGAGTTGC---ATCATGTCTCTCAGAATCGT---------------------------------------------------------------------------- s panTro4.chr9 68702018 312 + 137840987 TCTTTTTGGGGGGCCTACATTTTCAGTGCAGAGCAGGGCAGTGATGTCTTCGGCTAAGG----------GCGAGAAGGACG-TGGCTGAGGTGAGGGAAGAGCTGCTGTGGAAAGGAGGAGATACTATGGCTGGTTCGACATTAGCCAGTTCTGAAAATCAGCCACAATCTATGTAAGAGTCAGGTTCCTGTGCTGAGT-----TACC---------AAAATACTCCATCAACAAACGTAAGGCAAAATGACAGGAAGCTTGTTGTAAACACAAGTCAAAGAAATGTTTGGTCCCATGCTATTAACTGGGGAGTTGC---ATCATGTCTCTCAGAATCGT---------------------------------------------------------------------------- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64857219 309 + 135191526 TCTTTTTGGGGGGCCTACATTTTCAGTGCAGAGCAGGGCAGTGATGTCTTCGGCTAAGG----------GCGAGAAGGACA-TGGCTGAGGTGAGGGAAGAGCTGCTGTGGAA---AGGAGATAATGTGGCTGGTTCGACATTAGCCAGTTCTGAAAATCAGCCACAATCTATGTAAGAGTCAGGCTCCTGTGTTGAGT-----TACC---------AAAATACTCCATCAACAAACGTAAGGCAAAATGACAGGAAGCTGGTTGTAAACACAAGTCAAAGAAATGTTTGGCCCCATGCTATTAACTGGGGAGTTGC---ATCATGTCTCTCAGAATCGT---------------------------------------------------------------------------- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57897060 312 - 122973662 TTTTTGGGGGGGGCCTACATTTTCAGTGCAGGGCAGGGCAGTGATGTCTTCGGCTAAGG----------GCGAGAAGGACG-TGACTGAGGTGAGGGAAGAGCTGCTGTGGAGAGGAGGAGATACTATGGCTAGTTTGACATTAGCCAGTTTTGAAAATCAGCCACAATCTATGCAAGAGTCAGGCTCCTGTGCTGAGT-----TACC---------AAAATACTCTATCAACAAACGTAAGGCAAAATGACAGGAAGCTGGTTGTAAACACAAGTCAAAGAAATGTTTGGTCCCAAGCTATTAATTGGGGAGTTGC---ATCATGTCTCTCAGAATCGT---------------------------------------------------------------------------- i nomLeu3.chr1a I 130 C 0 s rheMac3.chr15 79826936 285 + 112192347 TCTTTTTTGGGGGCCTACATTTTCAGTACAGAGCAGGGCAGTGATGT--------------------------------------CTGAGGTGAAGGAAGAGCTGCTGTGGAGACGAGGAAATACTATGGCTGGTTCGACATTAGCTAGTTCTGAAAATCAGCCCCAATCTATGTAAGAGTCAGGCTCCCGTGCTGAGT-----TACC---------AAAATACTCTATCAACAAATGTAAGGCAAAATGACAGAAAGCTGGTTGTAAACACAGGTCAAAGAAATGTTTGGTCCCATGCTATTAATTAGGGAGTGGC---ATCATGTCTCTCAGAATCAT---------------------------------------------------------------------------- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80906433 285 + 112612857 TCTTTTTTGGGGGCCTACATTTTCAGTACAGAGCAGGGCAGTGATGT--------------------------------------CTGAGGTGAAGGAAGAGCTGCTGTGGAGACGAGGAGATACTATGGCTGGTTCGACATTAGCTAGTTCTGAAAATCAGCCCCAATCTATGTAAGAGTCAGGCTCCCGTGCTGAGT-----TACC---------AAAATACTCTATCAACAAATGTAAGGCAAAATGACAGAAAGCTGGTTGTAAACACAGGTCAAAGAAATGTTTGGTCCCATGCTATTAATTAGGGAGTGGC---ATCATGTCTCTCAGAATCAT---------------------------------------------------------------------------- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76955881 285 + 107442819 TCTTTTTTGGGGGCCTACATTTTCAGTACAGAGCAGGGCAGTGATGT--------------------------------------CTGAGGTGAAGGAAGAGCTGCTGTGGAGAGGAGGAGATACTATGGCTGGTTCGACATTAGCTAGTTCTGAAAATCAGCCCCAATCTATATAAGAGTCAGGCTCCCGTGCTGAGT-----TACC---------AAAATACTCTATCAACAAATGTAAGGCAAAATGACAGAAAGCTGGTTGTAAACACAGGTCAAAGAAATGTTTGGTCCCATGCTATTAATTAGGGAGTGGC---ATCATGTCTCTCAGAATCAT---------------------------------------------------------------------------- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81220325 285 + 108555830 TCTTTTTTGGGGGCCTACATTTTCAGTACAGAGCAGGGCAGTGATGT--------------------------------------CTGAGGTGAAGGAAGAGCTGCTGTGGAGAGGAAGAGATACTATGGCTGGTTCGACATTAGCTAGTTCTGAAAATCAGCCCCAATCTATATAAGAGTCAGGCTCCCGTGCTGAGT-----TACC---------AAAATACTCTATCAACAAATGTAAGGCAAAATGACAGAAAGCTGGTTGTAAACACAGGTCAAAGAAATGTTTGGTCCCATGCTATTAATTAGGGAGTGGC---ATCATGTCTCTCAGAATCAT---------------------------------------------------------------------------- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111455142 318 - 210400635 tccttttgggaggcctacgttttcagtgcagagcagggcagtgacgtcttcagctaaggatgtggctaagagagaaggatg-tggctgaagtcaggcaagagCTGTTGTGGAGAAGAGGAGAGGCTATGGCTGGTTCGACATTAGCCAGTTCTGAAAATCAGCCACAATCT----AAGAGTCAGGCTCCTGTGCTGAGT-----TACC---------AGAATACAATGTAAACAAACATAAGGCAAAATGACAGGAAGCTGGTTGTAAACACAAGTCAAAGAAATGTTTGGTCCCATGCTATTAATTGGGAAGTTGC---ATCATGTCTCTCAAAATCAT---------------------------------------------------------------------------- i calJac3.chr1 C 0 C 0 s canFam3.chr1 35337808 369 - 122678785 TCTTTCCTAGGCGCCTA-------AGTGGAG-GCAGG--------GTCATCAGCTAAGG----------CAAAGAAGAATGTTGGCTGAGGTGAGGGAAG-------GCAGGCAGGAGAGGTTAC--TGACTGGT------------AGCTTTTAAATTTAGCCACCATCCATGTAAGATTTGGGTTCTGGTGCCGGGTTCTGGTACCGAGTTATGAAAAACTCCTTATAAACAGACATGAGGCAACCAGACAGGAAGCTGGTTGTAAATGGAGGTCAAAGACACGTTTGGTCCACTGCTATGAACTGAGGAGTTTCCAAATCACACCCTTCAGAATAATTttttttaaactgaggtatcattagcgtattacattctattagtttcaagcacacaacattgtgattcAGAATCAC i canFam3.chr1 C 0 C 0 e mm10.chr19 38088904 2617 - 61431566 I a score=5844430.000000 s hg38.chr9_GL383541v1_alt 136815 1525 + 171286 ATTTTAAGATACCTAAAGCAAAATAGGGAAAATGAGGGGGC-TGTATAATGAAATACATTCTATCAGGGATCAGGAAGGGGTGTAATgtttcatacccgagtctgcaactggctgttgtgt------gagctgctatcacaggctctctggacctgttcttcattct--aaaaaatagCTGATTCTGTGGTCCCTTCTG--GAACCTC---CCCTCCCCTTACAGTGGCCTAAAGATCAGAAAATAA-AGCAGATTTCTGAAATCTTTGAGTTGAGAGATTTGGATGTTTACCATCCAAATAGCAATGAAAAAGTTCAGCTACAGGCCTGTA-TTCTATCACAGTGTGGTCCCTAGCCCAGACCTGAAGGCTCCTGGGAGCAGAAAGACTTTCACACTGAGAAAAGCTGGAAGCTGCTTG--ATCTCTGTCGCTTGTAAGAGCCAAAAGTTGAATTAAATCAGATGGGTCTTTTAAAAAAGAA-AAAACTAACCAGATGGGTCCTTTAAG---------AAAAAAAGTATTGGTCAGCTAAAAACTTATTTAAAAACACATGGTCATTCTGCCTTTTGTGGGAGATGAAGACCAAATATAGTATCTGCA-GCAGGCATGCTTTTGCAATTTTGCAGCTATTTCTCAAAACAGTGCTAGG-TTCTAAGAATGCTAAAGCCTCACACTT-ACTTTTCTAGATAAAGCTTCACTTAGTCTGCCTTCAGGGATTTGTAATAATTTCATCCATTTTGCCAAGTATCTCAATATTGAAA------------------------------TTTTTTAAAAACTCTATTACAACTTATTGTCAAACAGTTAAATGAATGCAATTACATCGTATAGTATATCTTACAGATGTGTCAGTAGCATCTTAATGAAGGGCTCTGGAATTTCACTGACTGGATTATAGTAATTTTGTGAATAATTATGCCACCAACTCTGTAGTTGTCGTAACCAAATTTATCTGTGCAAATGATTTCAAAAGATTTTAACCTCATCAGAAGAAAAGTTAAATTTAACTCAAAATCAAACCGTCTGGGAAATTGTTGAGGTCTACCACTTATAATAAGAACTTAACTAGGTTCATTTTGTGAAAATGGGTAAGTTATGATATTGTTGGCACAGGACTGAAATGTTTCTATCCAAATATAGAAGGCAATTTCTGGAAGCTATCATTTACATGCTAATTATAGGCCTAAATGGGGCCATTCAATTGGTAAAGTAGATGGTGGATTA-------ACCCAACAACCTAGTCTACCATGTCTATCAAGCAGGTCATGGAATCTACTCTAAAAGGCAGTGAAAAAAT-ATTTAATACAGCCAGTGTTTAGTTCTTTAACACAAACAGTCCTTTTGAACTATATAACAAAGATTTGATTTGATTTGACTTCACAGCACCCAACAAAA-TTTATTTCCTCCATTTCCTGGCAAAATTCTATTCATTATATTTGGTAGTTGTTAAACTATAACATCCTATAAAGTGAAAAGCAATAACCCTGATTATTTTAAAA-CCTATCTTGATTTGGTTTGA-GAACATGAATTCCTGACATACCTGATTCTCTACT s panTro4.chr9 68702330 1525 + 137840987 ATTTTAAGATACCTAAAGCAAAATAGGGAAAATGAGGGGGC-TGTATAATGAAATACATTCTATCAGGGATCAGGAAGGGGTGTAATGTTTCATACCCGAGTCTGCAACTGGCTGTTGTGT------GAGCTGCTATCACAGGCTCTCTGGACCTGTTCTTCATTCT--AAAAAATAGCTGATTCTGTGGTCCCTTCTG--GAACCTC---CCCTCCCCTTACAGTGGCCTAAAGATCAGAAAATAA-AGCAGATTTCTGAAATCTTTGAGTTGAGAGATTTGGATGTTTACCATCCAAATAGCAATGAAAAAGTTCAGCTACAGGCCTGTA-TTCTATCACAGTGTGGTCCCTAGCCCAGACCTGAAGGCTCCTGGGAGCAGAAAGACTTTCACACTGAGAAAAGCTGGAAGCTGCTTG--ATCTCTGTCGCTTCTAAGAGCCAAAAGTTGAATTAAATCAGATGGGTCTTTTAAAAAAGAA-AAAACTAACCAGATGGGTCCTTTAAG---------AAAAAAAGTATTGGTCAGCTAAAAACTTATTTAAAAACACATGGTCATTCTGCCTTTTGTGGGAGATGAAGACCAAATATAGTATCTGCA-GCAGGCATGCTTTTGCAGTTTTGCAGCTATTTCTCAAAACAGTGCTAGG-TTCTAAGAATGCTAAAGCCTCACACTT-ACTTTTCTAGATAAAGCTTCACTTAGTCTGCCTTCAGGGATTTGTAATAATTTCATCCATTTTGCCAAGTATCTCAATATTGAAA------------------------------AATTTTAAAAACTCTATTACAACTTATTGTCAAACAGTTAAATGAACGCAATTACGTCGTATAGTATATCTTACAGATGTGTCAATAGCATCTTAATGAAGGGCTCTGGAATTTCACTGACTGGATTATAGTAATTTTGTGAATAATTATGCCACCAACTCTGTAGTTGTCATAACCAAATTTATCTGTGCAAATGATTTCAAAAGATTTTAACCTCATCAGAAGAAAAGTTAAATTTAACTCAAAATCAAACCGTCTGGGAAATTGTTGAGGTCTACCACTTATAATAAGAACTTAACTAGGTTCATTTTGTGAAAATGGGTAAGTTATGATATTGTTGGCACAGGACTGAAATGTTTCTATCCAAATATAGAAGGCAATTTCTGGAAGCTATCATTTACATGCTAATTACAGGCCTAAATGGGGCCATTCAATTGGTAAAGTAGTTGGTGGATTA-------ACCCAACAACCTAGTCTACCATGTCTATCAAGCAGGTCATGGAATCTACTCTAAAAGGCAGTGAAAAAAT-ATTTAATACAGCCAGTGTTTAGTTCTTTAACACAAACAGTCCTTTTGAACTATATAACAAAGATTTGATTTGATTTGACTTCACAGCACCCAACAAAA-TTTATTTCCTCCATTTCCTGGCAAAATTCTATTCATTATATTTGGTAGTTGTTAAACTATAACATCCTATAAAGTGAAAAGCAATAACCCTGATTATTTTAAAA-CCTATCTTGATTTGGTTTGA-GAACATGAATTCCTGACATACCTGATTCTCTACT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64857528 1529 + 135191526 ATTTTAAGATACCTAAAGCAAAATAGGGAAAATGAAGGGGC-TGTATAATGAAATACATTCTATCAGGGATCAGGAAGGGGTGTAATGTTTCATACCCGAGTCTGCAACTGGCTGTTGTGT------GAGCTGCTATCACAGGCTCTCTGGACCTGTTGTTCATTCTAAAAAAAATAGCTGATTTTGTGGTCCCTTCTG--GAACCTC---CCCTCCCCTTACAGTGGCCTAAAGATCAGAAAATAA-AGCAGATTTCTGAAATCTTTGAGTTGAGAGATTTGGATGTTTACCGTCCAAATAGCAATGAAAAAGTTCAGCTACACGTCTGTA-TTCTATCACAGTGTGGTCCCTAGCCCAGACCTGAAGGCTCCTGGGAGCAGAAAGACTTTCACGCTGAGAAAAGCTGGAAGATGCTTGATATCTCTGTTGCTTGTAAAAGCCAAAAGTTGAATTAAATCAGATGGGTCTTTTAAAAAAGAA-AAAACTAACCAGATGGGTCCTTTAAG---------AAAAAAAGTATTGGTCAGCTAAAAACTTATTTAAAAACACATGGTCATTCTGCCTTTTGTGGGAGATGAAGACCAAATATAGTATCTACA-GCAGGCATGCTTTTGCAATTTTGCAGCTATTTCTCAAAACAGTGCTAGG-TTCTAAGAATGCTAAAACCTCACACTTAACTTTTCTAGATAAAGCTTCACTTAGTCTGCCTTCAGGGATTTGTAATAATTTCATCCATTTTGCCAAGTATCTCAATATTGAAA------------------------------TTTTTTTAAAACTCTATTACAACTTATTGTCAAACAGTTAAATGAATGCAATTACGTCGTATAGTATATCTTACAGATGTGTCAATAGCATCTTAATGAAGGGCTCTGGAATTTCACTGACTGGATTATAGTAATTTTGTGAATAATTATGCCACCGACTCTGTAGTTGTCGTAACCAAATTTATCTGTGCAAATGATTTCAAAAGATTTTAACCTCATCAGAAGAAAAGTTAAATTTAACTCAAAATCAAACCGTCTGGGAAATTGTTGAGGTCTACCACTTATAATAAGAACTTAACTAGGTTCATTTTGTGAACATGGGTAAGTTATAATATTGTTGGCACAGGACTGAAATGTTTCTATCCAAATATAGAAGGCAATTTCTGGAAGCTATCATTTACATGCTAATTATAGGCCTAAATGGGGCCATTCAATTGGTAAAGTAGATGGTGGATTA-------ACCCAACAACCTGGCCTACCATGTCTGTCAAGCAGGCCATGGAATCCACTCTAAAAGGCAGTGAAAAAAT-ATTTAATACAGCCAGTGTTTAGTTCTTTAACACAAACAATCCTTTTGAACTATATAACAAAGATTTGATTTGATTTGACTTCACAGCACCCAACAAAA-TTTATTTCCTCCCTTTCCTGGCAAAATTCTATTCATTATATTTGGAAGGACTTAAACTACAAACCCCTCCAAAGAGAAGA-CCCTTGCCCTGATTATTTCAAAA-CCTATCTTGCTTTGGTTTGA-CAACATCAATTCCTAACATACCTGATTCTCTACT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57897372 1514 - 122973662 ATTTTAAGATACCTAAAGCAAAATAGGGAAAATGAGGGGGC-TGTATAATGAGATACATTCTATCAGGGATCAGGGAGGGGTGTAATGTTTCATACCCAAGTCTGCAACTGGCTGTTGTGT------GAGCTGCTATCACAGGCTCTCTGGGCCTGTTCTTCATTCT--AAAAAATGGCTGATTCTGTGGTCCCTTCTG--GAACCTC---CCCTCCCCTTACAGTGGCCTAAAGATCAGAAAATAA-AGCAGATTTCTGAAATCTTTGAGTCGAGAGATTTGGATGTTTACCATCCAAATAGCAATG-TAAAGTTCAGCTACAGGCCTGTA-TTCTATCACAGTGTGGTCCCTAGCCCAGACCTGAAGGCTCCTGGGAGCAGAAAGACTTTCACACTGGGAAAAGCTGGAAGTTGCTTG--ATCTCTGTCACTTGTGAAAGCCAAAAG-----TTAAATCAGATGGGTCTTTTAAAAAAGAA-AAAGCTAACCAGATTGGTCCTTTAAG---------AAAAAAAGTATTGGTCAGCTAAAAACTTATTTAAAAACACATGGTCATTCTGCCTTTTGTGGGAGATGAAGACCAAATACAGTATCTGCA-GCAGGCATGCTTTTGCAGTTTAGCAACTATTTCTCAAAATAGTGCTAGG-TTCTAAGAATGCTAAACCCTCACACTT-ACTTTTCTAGATAAAGCTTCACTTAGCCTGTCTTCAGGGATTTGTAATAATTTCATCCATTTTTCCAAGTATCTCAATATTGAAA------------------------------TTTTTTTAAAACTGTATTACAACTTATTGTCAAACAGTTAAATGAATGCAATTACATCGTATAGAATATCTTACAGATGTGTCAATAGCATCTTAATGAAGGGCTCTGGAATTTCACTGACTGGATTATAGTAATTTTGTGAATAATTATGCCACCAACTCTGTAGTTGTCATAACCAAATTTATCTGTGCAAATGATTTCAAAAGATTCTAACCTCATCAGAAGAAAAGTTAAATTTAACTCAAAATCGAACCGTCTGGGAAATTGTTGAGGTCTACCACTTATAACAAGAACTTAACTAGGTTCATTTTGTGAACATGGGTAAGTTATGATATTGTTGGCACAGGACTGAAATGTTTCTATGCAAATATAGAAGGCAATTTCTGGAAGTTATCATTTACATGCTAATTATAGGCCTAAATGGGGCCATTCAATTGGTAAAGTAGTTAGTGGATTA-------ACCCAAAAACCTGGCCTACCATGTCTATCAAGCAGGCCATGGAATCCACTCTAAAAGGCAGTGAAAAAAC-ATTTAATACAGTCAGTGTTTAGTTCTTTAACACAAACAATCCTTTTGAACTACATAACAAAGATTTGATTTGAT-----TTCACAGCACCCAACAAAA-TTTATTTCCTCCTTTTTCTGGCAAAATTCTATTCATTATATTTGGTAGTTCTTAAACTATCACATCTCATAAAGTGAAAAGCAATAACCCTGATTATTTTAAAA-CCTATCTTGATTTGGTTTGA-GAACATGAATTCCTGACATATCTGATTCTCTACT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79827221 1522 + 112192347 ATTTTAAGATACCTCAAGCAAAATAGGGAAAATAAGGGGGC-TGTATAATGAAATACATTCTATCAGGGATCTGGAAGGGGCGTAATGTTTCATAcctgagtctgcaactggctgttgtgt------gagctgctatcacaggctctctgggcctgttcttcattct--aaaaaatggCTGATTCTGTGGTCCCTTTTG--GAACCTC---CCCTCCCCTTACAGTGGCCTAAAGATCAGAAAATAA-AGCAGATTTCGGAAATCTTTGAGTTGAGAGATTTGGATGTTTACCATCCAGATAGCAATGAAAAAGTTCAGCTGCAGGCCTGTA-TGCTAGCACACGGTGGTCCCTAGCCCCGACCTGAAGGCTCCTGGGAGCAGAAAGACTTTCACACTGGGAAAAGCTGGAAGCTGCTTG--ATCTCTGCTGCTTGTGAAAGCCAAAAGTTGAATTAAATCAGATGGGTCTTTTAAAAAAGAA-AAAACTAACCAGATGGGTCCTTTAAG---------AAAAAAAGTATTGGTCAGCTAAAAACTTATTTAAAAACACATGGCCATTCTGCCTTTTGTGGGAGATGAAGACCAAATATAGTATCTGCA-GCAGGCATGCTTTTGCAATTTAGCAACTATTTCTCAAAACAGTGCTGGG-TTCTAAGAATGCTAAAACCTCACACTT-ACTTTTCTAGATAAAGCTTCACTTAGCCTGTCTTGAGGGATTTGTAATAATTTCATCCATTTTGCCAAGTATCTCAATATTGAAG------------------------------TTTTTTTAAAACTCTATTACGACTTATTGTCAAACAGTTAAATGAATGCAATTACATCGTATAGTATATCTTACAGATGTGTCAATAGCATCTTAATGAAGGGCTCTGGAATTTCACTGACTGGATTATAGTAATTTTGTGAATAATTATGCCACCAACTCTGTAGCTGTCATAACCAAATTTATCTGTGCAAATGATTTCAAAAGATTTTAACCTCATCAGAAGAAAAGTTAAATTTAACTCAAAATCAAACCATCTGGGAAATTGTTGAGGTCTACCACTTACAACAAGAACTTAACTAGGTTCATTTTGTGAACACGGGTAAGTTATGATATTGTTGGCACAGGACTGAAATGTTTCTATCCAAATATAGAAGGCAATTTCTGGAAGCTATCATTTACATGCTAATTATAGGCCTAAATGGGGCCATTCAATTGGTAAAGTAGATGGTGGATGA-------ACCCAACAACCTGGCCTACCATGTCTATCAAGCAGGCCATGGAATCCACTCTAAAAGGCAGTGAAAAAAC-ATTTAATACAGCCAGTGTTCAGTTCTTTAACACAAACAATCCTTTTGAACTACAAAACAAAgatttgatttgatttgatttCACAGCACCCAACAAAA-TTTATTTCCTCC---TCCTGGCAAAATTCTATTCATTATATTTGGTAGTTTTTAAACTATAACATCTCACAAAGTGAAAAGCAGTAACCTTGATTATTTTAAAA-CCTATCTTGATTTGGTTTGA-GAACATGAATTCCTGACATATCTGATTCTCTACT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80906718 1522 + 112612857 ATTTTAAGATACCTCAAGCAAAATAGGGAAAATAAGGGGGC-TGTATAATGAAATACATTCTATCAGGGATCTGGAAGGGGCGTAATGTTTCATAcctgagtctgcaactggctgttgtgt------gagctgctatcacaggctctctgggcctgttcttcattct--aaaaaatggCTGATTCTGTGGTCCCTTTTG--GAACCTC---CCCTCCCCTTACAGTGGCCTAAAGATCAGAAAATAA-AGCAGATTTCGGAAATCTTTGAGTTGAGAGATTTGGATGTTTACCATCCAGATAGCAATGAAAAAGTTCAGCTGCAGGCCTGTA-TGCTAGCACACGGTGGTCCCTAGCCCTGACCTGAAGGCTCCTGGGAGCAGAAAGACTTTCACACTGGGAAAAGCTGGAAGCTGCTTG--ATCTCTGCTGCTTGTGAAAGCCAAAAGTTGAATTAAATCAGATGGGTCTTTTAAAAAAGAA-AAAACTAACCAGATGGGTCCTTTAAG---------AAAAAAAGTATTGGTCAGCTAAAAACTTATTTAAAAACACATGGCCATTCTGCCTTTTGTGGGAGATGAAGACCAAATATAGTATCTGCA-GCAGGCATGCTTTTGCAATTTAGCAACTATTTCTCAAAACAGTGCTGGG-TTCTAAGAATGCTAAAACCTCACACTT-ACTTTTCTAGATAAAGCTTCACTTAGCCTGTCTTGAGGGATTTGTAATAATTTCATCCATTTTGCCAAGTATCTCAATATTGAAG------------------------------TTTTTTTAAAACTCTATTACGACTTATTGTCAAACAGTTAAATGAATGCAATTACATCGTATAGTATATCTTACAGATGTGTCAATAGCATCTTAATGAAGGGCTCTGGAATTTCACTGACTGGATTATAGTAATTTTGTGAATAATTATGCCACCAACTCTGTAGCTGTCATAACCAAATTTATCTGTGCAAATGATTTCAAAAGATTTTAACCTCATCAGAAGAAAAGTTAAATTTAACTCAAAATCAAACCATCTGGGAAATTGTTGAGGTCTACCACTTACAACAAGAACTTAACTAGGTTCATTTTGTGAACACGGGTAAGTTATGATATTGTTGGCACAGGACTGAAATGTTTCTATCCAAATATAGAAGGCAATTTCTGGAAGCTATCATTTACATGCTAATTATAGGCCTAAATGGGGCCATTCAATTGGTAAAATAGATGGTGGATGA-------ACCCAACAACCTGGCCTACCATGTCTATCAAGCAGGCCATGGAATCCACTCTAAAAGGCAGTGAAAAAAC-ATTTAATACAGCCAGTGTTCAGTTCTTTAACACAAACAATCCTTTTGAACTACAAAACAAAGATTTGATTTGATTTGATTTCACAGCACCCAACAAAA-TTTATTTCCTCC---TCCTGGCAAAATTCTATTCATTATATTTGGTAGTTTTTAAACTATAACATCTCACAAAGTGAAAAGCAGTAACCTTGATTATTTTAAAA-CCTATCTTGATTTGGTTTGA-GAACATGAATTCCTGACATATCTGATTCTCTACT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76956166 1522 + 107442819 ATTTTAAGATACCTCAAGCAAAATAGGGAAAATAAGGGGGC-TGTATAATGAAATACATTCTATCAGGGATCTGGAAGGGGCGTAATGTTTCATACCTGAGTCTGCAACTGGCTGTTGTGT------GAGCTGCTATCACAGGCTCTCTGGGCCTGTTCTTCATTCT--AAAAAATGGCTGATTCTGTGGTCCCTTTTG--GAACCTC---CCCTCCCCTTACAGTGGCCTAAAGATCAGAAAATAA-AGCAGATTTCAGAAATCTTTGAGTCGAGAGATTTGGATGTTTACCATCCAGATAGCAATGAAAAAGTTCAGCTGCAGGCCTGTA-TGCTATCACAGGGTGGTCCCTAGCCCTGACCTGAAGGCTCCTGGGAGCAGAAAGACTTTCACACTGGGAAAAACTGGAAGCTGCTTG--ATCTCTGCTGCTTGTGAAAGCCAAAAGTTGAATTAAATCAGAtgggtcttttaaaaaagaa-aaaactaaccaGATGggtcctttaag---------aaaaaaagtattggtcagctaaaaacttatttaaaaacacatggCCATTCTGCCTTTTGTGGGAGATGAAGACCAAATATAGTATCTGCA-GCAGGCATGCTTTTGCAATTTAGCAACTATTTCTCAAAACAGTGCTGGG-TTCTAAGAATGCTAAAACCTCACACTT-ACTTTTCTAGATAAAGCTTCACTTAGCCTGTCTTGAGGGATTTGTAATAATTTCATCCATTTTGCCAAGTATCTcaatattgaaa------------------------------ttttttaaaaactctattacGACTTATTGTCAAACAGTTAAATGAATGCAATTACATCGTATAGTATATCTTACAGATGTGTCAATAGCATCTTAATGAAGGGCTCTGGAATTTCACTGACTGGATTATAGTAATTTTGTGAATAATTATGCCACCAACTCTGTAGCTGTCATAACCAAATTTATCTGTGCAAATGATTTCAAAAGATTTTAACCTCATCAgaagaaaagttaaatttaactcaaaatcaaACCATCTGGGAAATTGTTGAGGTCTACCACTTACAACAAGAACTTAACTAGGTTCATTTTGTGAACACGGGTAAGTTATGATATTGTTGGCACAGGACTGAAATGTTTCTATCCAAATATAGAAGGCAATTTCTGGAAGCTATCATTTACATGCTAATTATAGGCCTAAATGGGGCCATTCAATTGGTAAAGTAGATGGTGGATGA-------ACCCAACAACCTGGCCTACCATGTCTATCAAGCAGGCCATGGAATCCACTCTAAAAGGCAGTGAAAAAAC-ATTTAATACAGCCAGGGTTTAGTTCTTTAACACAAACAATCCTTTTGAACTACAAAACAaagatttgatttgatttgatttcacAGCACCcaacaaaa-tttatttcctcC---TCCTGGCAAAATTCTATTCATTATATTTGGTAGTTTTTAAACTATAACATCTCACAAAGTGAAAAGCAATAAccttgattattttaaaa-cctaTCTTGATTTGGTTTGA-GAACATGAATTCCTGACATATCTGattctctact i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81220610 1522 + 108555830 ATTTTAAGATACCTCAAGCAAAATAGGGAAAATAAGGGGGC-TGTATAATGAAATACATTCTATCAGGGATCTGGAAGGGGTGTAATgtttcatacctgagtctgcaactggctgttgtgt------gagctgttatcacaggctctctgggcctgttcttcattct--aaaaaatggCTGATTCTGTGGTCCCTTTTG--GAACCTC---CCCTCCCCTTACAGTGGCCTAAAGATCAGAAAATAA-AGCAGATTTCGGAAATCTTTGAGTCGAGAGATTTGGATGTTTACCATCCACATAGCAATGAAAAAGTTCAGCTGCAGGCCTGTA-TGCTATCACAGGGTGGTCCCTAGCCCCGACCTGAAGGCTCCTGGGAGCAGAAAGACTTTCACACTGGGAAAAGCTGGAAGCTGCTTG--ATCTCTGCTGCTTGTGAAAGCCAAAAGTTGAATTAAATCAGATGGGTCTTTTAAAAAAGAA-AAAACTAACCAGATGGGTCCTTTAAG---------AAAAAAAGTATTGGTCAGCTAAAAACTTATTTAAAAACACATGGCCATTCTGCCTTTTGTGGGAGATGAAGACCAAATATAGTATCTGCA-GCAGGCATGCTTTTGCAATTTAGCAACTATTTCTCAAAACAGCGCTGGG-TTCTAAGAATGCTAAAACCTCACACTT-ACTTTTCTAGATAAAGCTTCACTTAGCCTGTCTTGAGGGATTTGTAATAATTTCATCTATTTTGCCAAGTATCTCAATATTGAAA------------------------------TTTTTTAAAAACTCTAGTACGACTTATTGTCAAACAGTTAAATGAATGCAATTACATCGTATAGTATATCTTACAGATGTGTCAATAGCATCTTAATGAAGGGCTCTGGAATTTCACTGACTGGATTATAGTAATTTTGTGAATAATTATGCCACCAACTCTGTAGCTGTCATAACCAAATTTATCTGTGCAAATGATTTCAAAAGATTTTAACCTCATCAGAAGAAAAGTTAAATTTAACTCAAAATCAAACCATCTGGGAAATTGTTGAGGTCTACCACTTACAACAAGAACTTAACTAGGTTCATTTTGTGAACATGGGTAAGTTATGATATTGTTGACACAGGACTGAAATGTTTCTATCCAAATATAGAAGGTAATTTCTGGAAGCTATCATTTACATGCTAATTATAGGCCTAAATGGGGCCATTCAATTGGTAAAGTAGATGGTGGATGA-------ACCCAAAAACCTGGCCTACCATGTCTATCAAGCAGGCCATGGAATCCACTCTAAAAGGCAGTGAAAAAAC-ATTTAATACAGCCAGTGTTTAGTTCTTTAACACAAACAATCCTTTTGAACTACAAAACAAAGATTTGATTTGATTTGATTTCACAGCACCCAACAAAA-TTTATTTCCTCC---TCCTGGCAAAATTCTATTCATTATATTTGGTAGTTTTTAAACTATAATATCTCACAAAGTGAAAAGCAATAACTTTGATTATTTTAAAA-CCTATCTTGATTTGGTTTGA-GAACATGAATTCCTGACATATCTGATTCTCTACT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111455460 1521 - 210400635 GTTTTAAGATACCTAAAGCAAAATAGGGAAAATGAGGAGGC-TGTATAATGAAGTATATTCTATCGGGGATCAGGAAGGAGTACCATGTTTCATACCTGAGTCTGCAGCTGGCTGCTGTGT------GAGCTGCTATCATAGGTTCTCTGGACCTGTTCTTCATTCT--AAAAAGTGTTTGATTCTGTGGTCCCTTCTG--GAACCTC---CCCTGCAATTACAGTGGCCCAAAAATATGAAAATAA-AGCAGATTTCTGAAATCTGTGAGTCAAGAGATTTGGATGTTTACCACCCAAATAGCAATGAAAAAGTTCAGCTGCAGGCCTGTA-TTCTATCACAGTGTGGT-CCTAGCCCAGACCTGAAGGCTCCTGGAATCAGAAAGACTTTCACACTGGGAAAAGCTGGAAGCCACTCA--ATCTCTGTCCCTTGTGAAAGCCAAAAGTTGAATTAAATCAGATGGGTCTTTTAAACAAGAA-AAAACTAGCCAGATGGGTTCTTTAAG---------AAAAAAAGTTTTGATCAGCTAAAAACTTGTTTAAAAACAAATGGTCATTCTGCCTTTTGTGGGAGATGAAGACCAAATATAGTCACTGCAGGGAGGCATGCTTTTGCAATTTAGCAACTATTTCTCAAAACAGTGCTAGG-TTCTAAGAATGCTAAAATCTCACATTT-ATTTTTCTAGATAAAGCTTCACTTAGCCTGTCTTTAGGGATTTCTAATAATTTCATCCATTTTGCCAAGTATCTCAATATTGAAA------------------------------TTTTTTAAAAACTCTATTACAACTTATTGTCAAACAGTTAAATGAGTGCAATTACATCATATAGTATATCTTACAGTTGTGTCAATAGCATCTTAATGAAGGGCTGTGGAATTTCACTGACTGGATTATAGTAATTTTGTG-ATAATTATGCCACCAACTCTGTAGTTGTCATAACCAAATTTATCTGTGCAAATGATTTCAAAAGATTTTAACCTCTTCAGAAGAAAAGTTAAATTTAACTCAAAATTGAACTGTCTGGGAAATTGTTGAGGTCCACCACTTATAACAAGAACTTAACTAGGTTCATTTTGTGAACATGAGTAAGTTATGATATTGTTGGCACAGGACTGAAATGTTTCTATCCAAATATAGAAGGCAATTTCTGGAAGCTATCATTCACATGCTAATTATAGGCCTTAATGGGGCCATTCAATTGGTAAAGTAGATGGTGGATTA-------ACCCAACAACCTGGCCTGCCATGTATATCAAGAAGGCCATGGAATCTACCATAAAAGGCAGTGAGAAAAC-AGTTAATACAGTCAGTATTTAGTTCTTTAACACAAACAATCCCTTTGAACTGCAAAACAAAGATTTGATTTGATTTGATTCAACAGCACCCTACAAAA-CTTATTTCCTTC---TCCTGGCAAAATTCTATTCATTATATTTGGCAGTTCTTAAACTATGACGTCTCATAAAGAGAAAAGCAATAACCTTAATTCTTTTAAAA-CCTATCTTGATTTAGTTTGA-AAACATGAATTCTTGACATATCTGATTCTCTACT i calJac3.chr1 C 0 C 0 s mm10.chr19 38091521 1449 - 61431566 atttTTCAATACTTAATAGAAGGAAGGAAA---GAATGGGC-AGGGTAGAGTACTTTTCTCTATCACCAACCTGGCAAGAGTCTGGTGTTTTGTGCTTGGGTATGCAGGTTGCTGCTGTGT------GAATGTGTATCAGAAACT------GCCTTTGTCTCCCTCT---AAAACTGATAGATCCTG-GGTTTCATATGCCCACCCTCTAGCCCCCACTTTCCAGTGGCAGGAAGATCTAAAGATGATTGCAGATTTTCGAAACCAATGAATTGTGAGGTTTGACTGTTCACCACCCAAAGAGCAATGGGAAAAATTGGCTGCA-GCCTGTG-TTCTATCCCAGCATGCCCTCGACCTCAGAATTGAA----CCTGTGTGAGCAAAGACT-----------------------CTGCTTG----------------TCAGAGCTAAAAGTTGAATTAAATCACATGAGTATTTTCAAAGAGAAGAAAACCAAACAGATGGGTCTTTTAGGGTCTTTTAAAAAGAAAGCATTGGTCAGCAAAGGACATGTTTAAAAACACATGGTCTGTCTGTGGTTTGTGGGACATAAAAACCAAATATAGAATCTGCA-AGAGGCGTGCTGTTAGGGTTTAGCCATAGTTTTCTAAAATATAACCAGG--TCTAAGAATGTTTACATCTCAC-----ACTCTTTCAGATACCTCTTCATGGAGTTTGTCCTCTGACTTCAGTGAAAATTACATCATTTCTGCCACGTATCTTAATTTTGAAATTGGTGTT---CTTTGCTTTG-AACTTTTCTTGTTTTAAGATTTAGTC---ACTCACTGCCAATCATTTACATGGGAACAATGACGTTAGGCAGTCCATCCGACTCTGGTGTCCACAGCATCTTAATAAAGGACTACAGAGTTCCTCCAAGTAGATCATAGTGACTTTGTGAGTAATT---CCACCAGCTCTGTAGTCACCACACCCAACTATATCTGTGCAAGTGATTTCAAGGGATTTTAGCATCATCAGTAGGAACGTACAGTTTAACCGGGGA--------TCTGAG-----GTTGAGGCCCATTAGTTGTAACAGGAGA-TAACTGGGCTCAC--------------------------TTGATGGCAAAGGATTGGAATGTTT-TGTCT-------GAAGCTCATTTATAGAAGTTTTCCTGCACATCCTAATTATAGGGCTACATGGAGTT-TGGGATTGGTAAGGTCAGTGTTGGTTTGCCCCACCACTCAACAACTCTGCCTGCGGTATCTGTCAAACATGTCATGGAAATGCCTTTGGACATCACTGAGAAACC-ATGCAGTTGGGCCAGG--CTGGTTCTTTCATACAGACAATACCTGTTGATGGTTCAGCAAAGGCCTTGTTTTATTATATTCCACAGCTCTTATGAGAC-CTGATCTCCTTC---TCCTTAT-AAACCCTATTCATTGTGCAAGCTAGTGTTTATACT-TAACACCTC-TAAAGTGGAAA---CTGGCACTTTTTGTTTTAAAA-C--AACGAGATGTGATTTGACAAAAATGAATTCATGATAAAACTGTTTCTCTACT i mm10.chr19 I 2617 I 28 s canFam3.chr1 35338177 1549 - 122678785 AGTTTTGAATACCTAAAGCAAAAGGGAGAAAAGAGACTGGTGGGTATAATGAAACGTGCCCTATCGGATCTTTGGA----GCGCGATGGTTTGCATCTGGCTCTGCAGCTGGAC-TTGTGTGATCTCGAGTTGGTATCACAGGGTCTCTGGGCCT-TCCCAGATTCT--AAAAAGTGACTGATTTTAATGTGCCTCCTG--GAGTCTC---TCTTCTCTTCCCAGTGACCAAAAGATCCAAAAATAG-TGCAGATTTCTGAAATCAGTGAGCTGAGAGATCTTAATATTTACCACGAAAATAGCAATGAAGAAGTTCAGCAGTTTATCTGCAGGTTTACCACACCACGCCCTTTACCCCAGAACGGAAGGCTCCTATGAGCAGAAGGGCT--CACGGAGGGAGAGACTGGAAGCTGCCCA--ATCTTTGTTGCTTGTCAAAGCCAAAAATTGAATTAAATCAGATGGGTCTTTTGAAAAAGAA-AAAACAAAACAGATGAGTCTTTTAAG-----AAAAAAAAAAAGTGTTGGTCAGCTAAAGACTTATTTAAAAACACATGGTCATCCTGCCATTTGTGGGATCTAAAGACCAAATATAGTATCTGCA-GGAGGCATGCTGTTACAATTTAGCAACTATTTCCCAAAACGTGGCTGGGATTCTAAAAATGCT--AGTCCTATACTC-GTGTCTCTAGATGAAGCTCCACTCAGCCTGTCTTTAGGGATTTGAGAAAATTCCACCCCTTTAGCCAAGTGTCTTAATATTGGAGTCTTTGTTTAGTTTTGCTTTACAGTTCTTTTATTTTTAGAATTCTATTACAGCTTATTGTCAAACAGTTAAATGAATACAACTGTATTATATAGGATACCCTGCAGTTGTGTCCAC-GCATCTTAATGAAAGACTCTGTAACTTCACAGACTGGATTATAGTAATTTTATGAATAATTATTCCACCAACTCTGAAGTCACCATACCCAAATTTATGTGTCCAAATGATTTCAAAGGAGTTTAACCTCATCAGAAGAAAAGTTAAATTTAACTCAGAATCAGGCCCTCTGCTAAATTGTCAAGGTCCACTGCTTTTAACAGGAGCCTAGCTAGGTTCATTTTGTGAACCTGGGTAATTTATGATATTGTTGGCATACAACTGAAATGTTTCTATGTGAGGATAGAAGGCCATTTCTGGAAACTATCATTCACATACTTATTATAGGCCCAATTGGAGCTATTCAATGAGTAAAGTAGGTGGTGGGGTA-------AGCCAACAATCTGGCCAACTATGTCTAGTGAGCAGGCCATGGAGCCTACTTTAAAAGACACTTTTAAATCAAGTTAATTCAGCCAGTGTTTAGCTGTTTAATACAAACAATCCTTTTTCGCTTCACAACAAAGGTTTGTGGTTATAT-ATTCCACAGCTCTTGGGAAAGCTTTATTACCTCCCTCCCTCAGCGAAGTT----------GGTTGGGTAGCCCTTAAATTATGACACTTCATAAAGTTAGAATCAGTAACCCTAACTCCTTTAAAAGTTTAACCTGGTTTAGTTTGA-GAACATAAGTTCCCAATATATCTGTTTATCTACT i canFam3.chr1 C 0 C 0 a score=32661.000000 s hg38.chr9_GL383541v1_alt 138340 10 + 171286 TTTTCTTTCC s panTro4.chr9 68703855 10 + 137840987 TTTTCTTTCC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859057 10 + 135191526 TTTTCTTTCC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57898886 8 - 122973662 TTTTCTT--C i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79828743 10 + 112192347 TTTTCTTTCC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80908240 10 + 112612857 TTTTCTTTCC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76957688 10 + 107442819 ttttctttcc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81222132 10 + 108555830 GTTTCTTTCC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111456981 10 - 210400635 TTTTCTTTCC i calJac3.chr1 C 0 C 0 s canFam3.chr1 35339726 10 - 122678785 TTTTCTTTGC i canFam3.chr1 C 0 C 0 e mm10.chr19 38092970 28 - 61431566 I a score=28858.000000 s hg38.chr9_GL383541v1_alt 138350 10 + 171286 TGGGTACttt s panTro4.chr9 68703865 10 + 137840987 TGGGTACttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859067 10 + 135191526 TGGCTACttt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57898894 10 - 122973662 CGGGTACttt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79828753 10 + 112192347 CGGGTACTTt i rheMac3.chr15 C 0 I 1 s macFas5.chr15 80908250 10 + 112612857 CGGGTACttt i macFas5.chr15 C 0 I 1 s papAnu2.chr15 76957698 10 + 107442819 caggtacttt i papAnu2.chr15 C 0 I 1 s chlSab2.chr12 81222142 10 + 108555830 CGGGTACttt i chlSab2.chr12 C 0 I 1 s calJac3.chr1 111456991 10 - 210400635 TGGGTACttt i calJac3.chr1 C 0 C 0 e mm10.chr19 38092970 28 - 61431566 I e canFam3.chr1 35339736 0 - 122678785 C a score=-6469.000000 s hg38.chr9_GL383541v1_alt 138360 2 + 171286 --tg s panTro4.chr9 68703875 2 + 137840987 --tg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859077 2 + 135191526 --tg i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79828764 1 + 112192347 --t- i rheMac3.chr15 I 1 C 0 s macFas5.chr15 80908261 1 + 112612857 --t- i macFas5.chr15 I 1 C 0 s papAnu2.chr15 76957709 1 + 107442819 --t- i papAnu2.chr15 I 1 C 0 s chlSab2.chr12 81222153 1 + 108555830 --t- i chlSab2.chr12 I 1 C 0 s calJac3.chr1 111457001 2 - 210400635 tg-- i calJac3.chr1 C 0 C 0 e mm10.chr19 38092970 28 - 61431566 I e canFam3.chr1 35339736 0 - 122678785 C e nomLeu3.chr1a 57898904 0 - 122973662 C a score=3822.000000 s hg38.chr9_GL383541v1_alt 138362 2 + 171286 tt s panTro4.chr9 68703877 2 + 137840987 tt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859079 2 + 135191526 tt i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79828765 2 + 112192347 tt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80908262 2 + 112612857 tt i macFas5.chr15 C 0 C 0 s chlSab2.chr12 81222154 2 + 108555830 tt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111457003 2 - 210400635 tt i calJac3.chr1 C 0 C 0 e mm10.chr19 38092970 28 - 61431566 I e canFam3.chr1 35339736 0 - 122678785 C e papAnu2.chr15 76957710 0 + 107442819 C e nomLeu3.chr1a 57898904 0 - 122973662 C a score=1365.000000 s hg38.chr9_GL383541v1_alt 138364 1 + 171286 t s panTro4.chr9 68703879 1 + 137840987 t i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859081 1 + 135191526 t i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79828767 1 + 112192347 t i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80908264 1 + 112612857 t i macFas5.chr15 C 0 C 0 s calJac3.chr1 111457005 1 - 210400635 t i calJac3.chr1 C 0 C 0 e mm10.chr19 38092970 28 - 61431566 I e chlSab2.chr12 81222156 0 + 108555830 C e canFam3.chr1 35339736 0 - 122678785 C e papAnu2.chr15 76957710 0 + 107442819 C e nomLeu3.chr1a 57898904 0 - 122973662 C a score=3329.000000 s hg38.chr9_GL383541v1_alt 138365 5 + 171286 tgttt s ponAbe2.chr9 64859082 5 + 135191526 tgttt i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79828768 5 + 112192347 ttttt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80908265 5 + 112612857 ttttt i macFas5.chr15 C 0 C 0 s calJac3.chr1 111457006 5 - 210400635 ttttt i calJac3.chr1 C 0 I 1 e mm10.chr19 38092970 28 - 61431566 I e chlSab2.chr12 81222156 0 + 108555830 C e canFam3.chr1 35339736 0 - 122678785 C e papAnu2.chr15 76957710 0 + 107442819 C e nomLeu3.chr1a 57898904 0 - 122973662 C e panTro4.chr9 68703880 0 + 137840987 C a score=819.000000 s hg38.chr9_GL383541v1_alt 138370 3 + 171286 ttt s rheMac3.chr15 79828773 3 + 112192347 ttt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80908270 3 + 112612857 ttt i macFas5.chr15 C 0 C 0 e mm10.chr19 38092970 28 - 61431566 I e chlSab2.chr12 81222156 0 + 108555830 C e canFam3.chr1 35339736 0 - 122678785 C e ponAbe2.chr9 64859087 0 + 135191526 C e calJac3.chr1 111457011 1 - 210400635 I e papAnu2.chr15 76957710 0 + 107442819 C e nomLeu3.chr1a 57898904 0 - 122973662 C e panTro4.chr9 68703880 0 + 137840987 C a score=364.000000 s hg38.chr9_GL383541v1_alt 138373 4 + 171286 tttt s rheMac3.chr15 79828776 4 + 112192347 tttt i rheMac3.chr15 C 0 I 87 e mm10.chr19 38092970 28 - 61431566 I e chlSab2.chr12 81222156 0 + 108555830 C e canFam3.chr1 35339736 0 - 122678785 C e ponAbe2.chr9 64859087 0 + 135191526 C e calJac3.chr1 111457011 1 - 210400635 I e papAnu2.chr15 76957710 0 + 107442819 C e macFas5.chr15 80908273 0 + 112612857 C e nomLeu3.chr1a 57898904 0 - 122973662 C e panTro4.chr9 68703880 0 + 137840987 C a score=0.000000 s hg38.chr9_GL383541v1_alt 138377 6063 + 171286 gtcatggctctttttttttttttttttttttattttattatactctaagttttagggtacatgtgcacattgtgcaggttagttacatatgtatacatgtgccatgctggtgcgctgcacccactaatgtgtcatctagcattaggtatatctcccaatgctatccctcccccctcccccgaccccaccacagtccccagagtgtgatattccccttcctgtgtccatgtgatctcattgttcaattcccacctatgagtgagaatatgcggtgtttggttttttgttcttgcgatagtttactgagaatgatggtttccaatttcatccatgtccctacaaaggatatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttatactcatttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccgcatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgagatgatatctcatagtggttttgatttgcatttctctgatggccagtgatgatgagcatttcttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcgcccactttttgatggggttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgcgaaaattttctcccatgttgtaggttgcctgttcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttgtcttttgttgccattgcttttggtgttttggacatgaagtccttgcccacgcctatgtcctgaatggtaatgcctaggttttcttctagggtttttatggttttaggtttaacgtttaaatctttaatccatcttgaattgatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatcctttccccattgcttgtttttctcaggtttgtcaaagatcagatagttgtagatatgcggcattatttctgagggctctgttctgttccattgatctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgcagtatagtttgaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggattgacttggcaatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctgtaaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtctcctcttttatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcacccatgatttggctctctgtttgtctgttgttggtgtataagaatgcttgtgatttttgtacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacaatggggttttctagatatacaatcatgttgtctgcaaacagggacaatttgacttcctcttttcctaattgaataccctttatttccttctcctgcctgattgccctggccagaacttccaacactatgttgaataggagcggtgagagagggcatccctgtcttgcgccggttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgaaatacgtcccatcaatacctaatttattgagagtttttagcatgaagggttgttgaatcttgtcaaaggctttttctgcatctattgagataatcatgtggtttttgtctttggctctgtttatatgctggattacatttattgatttgcgtatattgaaccagccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatgtgctgctggattcggtttgccagtattttattgaggatttttgcatcaatgttcatcaaggatattggtctaaaattctcttttttggttgtgtctctgcccggctttggtatcagaatgatgctggcctcataaaatgagttagggaggattccctctttttctattgattggaatagtttcagaaggaatggtaccagttcctccatgtacctctggtagaattcggctgtgaatccatctggtcctggactctttttggctggtaaactattgattattgccacaatttcagagcctgttattggtctattcagagattcaacttcttcctggtttagtcttgggagagtgtatgtgtcgaggaatgtatccatttcttctagattttctagtttatttgcgtagaagtgtttgtagtattctctgatggtagtttgtatttctgtgggatcggtggtgatatcccctttatcattttttattgtgtctatttgattcttctctctttttttctttattagtcttgctagcggtctatcaattttgttgatcctttcaaaaaaccagctcctggattcattgattttttgaagggttttttgtgtctctatttccttcagttctgctctgattttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttttctagttcttttaattgtgatgttagggtgtcaattttggatctttcctgctttctcttgtaggcatttagtgctataaatttccctctacacactgctttgaatgcgtcccagagattctggtatgtggtgtctttgttctcgttggtttcaaagaacatctttatttctgccttcatttcgttatgtacccagtagtcattcaggagcaggttgttcagtttccatgtagttgagcggctttgagtgagattcttaatcctgagttctagtttgattgcactgtggtctgagagatagtttgttataatttctgttcttttacatttgctgaggagagctttacttccaactatgtggtcaattttggaataggtgtggtgtggtgctgaaaaaaatgtatattctgttgatttggggtggagagttctgtagatgtctattaggtctgcttggtgcagagctgagttcaattcctgggtatccttgttgactttctgtctcgttgatctgtctaatgttgacagtggggtgttaaagtctcccattattaatgtgtgggagtctaagtctctttgtaggtcactgaggacttgctttatgaatctgggtgctcctgtattgggtgcataaatatttaggatagttagctcctcttgttgaattgatccctttaccattatgtaatggccttctttgtctcttttgatctttgttggtttaaagtctgttttatcagagactaggattgcaacccctgcctttttttgttttccattggcttggtagatcttcctccatccttttattttgagcctatgtgtgtctctgcacgtgagatgggtttcctgaatacagcacactgatgggtcttgactctttatccaacttgccagtctgtgtcttttaattgcagaatttagtccatttatatttaaagttaatattgttatgtgtgaatttgatcctgtcattatgatgttagctggtgattttgctcattagttgatgcagtttcttcctagtctcgatggtctttacattttggcatgattttgcagcggctggtaccggttgttcctttccatgtttagtgcttccttcaggagctcttttagggcaggcctggtggtgacaaaatctctcaacatttgcttgtctataaagtattttatttctccttcacttgtgaagcttagtttggctggatatgaaattctgggttgaaaattcttttctttaagaatgttgaatattggcccccactctcttctggcttgtagagtttctgccgagagatccgctgttagtctgatgggctttcctttgagggtaacccgacctttctctctggctgcccttaacattttttccttcatttcaactttggtgaatctgactgacaattatgtgtcttggagttgctcttctcgaggagtatctttgtggcgttctctgtatttcctgaatctgaacgttggcctgccttgctagattggggaagttctcctggataatatcctgcagagtgttttccaacttggttccattctccacatcactttcaggtacaccaatcagacgtagatttggtcttttcacatagtcccatatttcttggaggctttgctcatttctttttattcttttttctctaaacttcccttctcgcttcatttcattcatttcatcttccattgctgataccctttcttccagttgatcgcatcggctcctgaggcttctgcattcttcacgtagttctcgagccttggttttcagctccatcagctcctttaagcacttctctgtattggttattctagttatacattcttctaaatttttttcaaagttttcaacttctttgcctttggtttgaatgtcctcccgtagctcagagtaatttgatcgtctgaagccttcttctctcagctcgtcaaaatcattctccatccagctttgttctgttgctggtgaggaactgcgttcctttggaggaggagaggcgctctgcgttttagagtttccagtttttctgttctgttttttccccatctttgtggttttatctacttttggtctttgatgatggtgatgtacagatgggttttcggtgtagatgtcctttctggttgttagttttccttctaacagacaggaccctcagctgcaggtctgttggaataccctgccgtgtgaggtgtcagtgtgcctctgctggggggtgcctcccagttaggctgctcgggggtcaggagtcagggacccacttgaggaggcagtctgtctgcccgttctcagatctccagctgcgtgctgggagaaccactgctctcttcaaagctgtcagacagggacacttaagtctgcagaggttactgctgtctttttgtttgtctgtgccctgcccccagaggtggagcctacagaggcaggcaggcctccttgagctgtggtgggctccacccagttcgagcttcccggctgctttgtttacctaagcaagcctgggcaatggcgggcgcccctcccccagcctcgttgccgccttgcagtttgatctcagactgctgtgctagcaatcagcgagattccgtgggcgtaggaccctccgagccaggtgtgggatatagtctcgtggtgcgccgtttcttaagccggtctgaaaagcgcaatattcgggtgggagtgacccgattttccaggtgcgaccgtcacccctttctttgactcggaaagggaactccctgaccccttgcgcttcccaggcgaggcaatgcctcgccctgcttcggctcgcgcacggtgcgcacacacactggcctgcgcccactgtctggcactccctagagagatgaacccggtacctcagatggaaatgcagaaatcaccgtcttctgcgtcgctcacgctgggagctgtagaccggagctgttcctattcggccatcttggctcctcccccC e mm10.chr19 38092970 28 - 61431566 I e chlSab2.chr12 81222156 0 + 108555830 C e canFam3.chr1 35339736 0 - 122678785 C e ponAbe2.chr9 64859087 0 + 135191526 C e rheMac3.chr15 79828780 87 + 112192347 I e calJac3.chr1 111457011 1 - 210400635 I e papAnu2.chr15 76957710 0 + 107442819 C e macFas5.chr15 80908273 0 + 112612857 C e nomLeu3.chr1a 57898904 0 - 122973662 C e panTro4.chr9 68703880 0 + 137840987 C a score=573.000000 s hg38.chr9_GL383541v1_alt 144440 2 + 171286 TG s panTro4.chr9 68703880 2 + 137840987 tg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859087 2 + 135191526 tg i ponAbe2.chr9 C 0 C 0 e mm10.chr19 38092970 28 - 61431566 I e chlSab2.chr12 81222156 0 + 108555830 C e canFam3.chr1 35339736 0 - 122678785 C e rheMac3.chr15 79828780 87 + 112192347 I e calJac3.chr1 111457011 1 - 210400635 I e papAnu2.chr15 76957710 0 + 107442819 C e macFas5.chr15 80908273 0 + 112612857 C e nomLeu3.chr1a 57898904 0 - 122973662 C a score=19215.000000 s hg38.chr9_GL383541v1_alt 144442 12 + 171286 ttttgttttttt s panTro4.chr9 68703882 12 + 137840987 ttttgttttttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859089 12 + 135191526 ttttgttttttt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57898904 12 - 122973662 tttttttttttt i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80908273 12 + 112612857 tttttttttttt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76957710 12 + 107442819 ttttttttttat i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81222156 12 + 108555830 tttttttttttt i chlSab2.chr12 C 0 C 0 e mm10.chr19 38092970 28 - 61431566 I e canFam3.chr1 35339736 0 - 122678785 C e rheMac3.chr15 79828780 87 + 112192347 I e calJac3.chr1 111457011 1 - 210400635 I a score=235779.000000 s hg38.chr9_GL383541v1_alt 144454 101 + 171286 aagacaggatctcactctgtcacccaggctggagtgcagtgatgtgatcacagttcactgcagcctcaacctcccgggccgaggtgatccttccacctc-aa s panTro4.chr9 68703894 101 + 137840987 aagacaggatctcactctgtcacccaggctggagtgcagtgatgtgatcacagttcactgcagcctcaacctcccgggccgaggtgatccttccacctc-aa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859101 100 + 135191526 -agacaggatctcactctgtcacccaggctggagtgcagtgatgtgatcacagttcactgcagcctcaacctcccgggccgaggtgatcctgccacctc-aa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57898916 102 - 122973662 aagacaggatctcactctgtcacccaggctggagtgcagtggtgtgatcacagctcactgcagcctcaacctcccaggccgaggtgatcctgccacctcaaa i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80908285 101 + 112612857 aagataggatttcaatctgtcacccagggtggagtgcagtggtgtgatcacaactcactgcagcttcaacctcccaggctgaggtgatcctgccacctc-ag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76957722 101 + 107442819 aagataggatttcaatctgtcacccaggctggagtgcagtggtgtgatcacaactcactgcagcttcaacctcccgggccgaggtgatcctgccacctc-ag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81222168 101 + 108555830 aagataggatttcaatctgtcacccaggctggagtgcagtggtgtgatcacaactcactgcagcttcaacctcctgggctgaggtgatcctgccacctc-ag i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111457012 101 - 210400635 aggtcaggatctcattctgtcacccaggctggagtgcagtggtgcaatcacagctcactgcagcctcagcctcccaggcccaggtgatcctgccacctc-ag i calJac3.chr1 I 1 C 0 e mm10.chr19 38092970 28 - 61431566 I e canFam3.chr1 35339736 0 - 122678785 C e rheMac3.chr15 79828780 87 + 112192347 I a score=510395.000000 s hg38.chr9_GL383541v1_alt 144555 176 + 171286 cctcctgagtaactggaactacaggtgtacaccaccgtgcccagctaattttttatacttttagtagagagggggttttgccatgttgctcaggctggtctcgaa---ctgg----ctgcaatctgcctgccttggcctcccaaagtgttggga--acaggcatgagccatggcacctggACTCG s panTro4.chr9 68703995 176 + 137840987 cctcctgagtaactggaactacaggtgtacgccaccgtgcccagctaattttttatacttttagtagagagggggttttgccatgttgctcaggctggtctcgaa---ctgg----ctgcaatctgcctgccttggcctcccaaagtgttggga--acaggcatgagccatggcacctggACTCG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859201 176 + 135191526 cctcccgagtaactggaactacaggtgtgcaccactgtgcccaactaattttttatacttttagtagagagggggtttcgccacgttgctcaggctggtctcgaa---ctgg----cagcaatctgcctgccttggcctcccaaagtgttggga--acaggcatgagccatggcacctggACTCG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57899018 178 - 122973662 cctcctgagtaactggaactacacgtgtgcgccaccatgcccaactaattttttgtacttttagtagagagggggtttcgccatgttgctcaggctggtctcgaa---ctgg----cagcaatctgcctggcttggcctcccaaagtgttgagattacaggcatgagccatggcacctggACTTG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79828867 177 + 112192347 cctcctgagtcactggaactacaggtgtgtgccacc-tgcccaactaattttttgtacttttagtagagagggggttttgccatgatgctcaggctggcctcgaa---ctgg----cagcaatctgcctgcctcggcctcccaaagtgttgggattacaggcatgagccacggcacctggACTCG i rheMac3.chr15 I 87 C 0 s macFas5.chr15 80908386 177 + 112612857 cctcctgagtcactggaactacaggtgtgtgccacc-tgcccaactaattttttgtacttttagtagagagggggttttgccatgatgctcaggctggcctcgaa---ctgg----cagcaatctgcctgcctcggcctcccaaagtgttgggattacaggcatgagccacggcacctggACTCG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76957823 177 + 107442819 cctcctgagtcactggaactacaggtgtgtgccacc-tgcccaactaattttttgtacttttagtagagagggggttttgccatgatgctcaggctggcctcgaa---ctgg----cagcaatctgcctgcctcggcctcccaaagtgttgggattacaggcatgagccacggcacctgaaCTCG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81222269 177 + 108555830 cctcctgagtcactggaactacaggtgtgtgccacc-tgcccaactaattttttgtacttttagtagagagggggttttgccatgatgctcaggctggcctcgaa---ctgg----cagcaatctgcctgcctcggcctcccaaagtgttgggattacaggcatgagccccagcagctggACTCA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111457113 185 - 210400635 cctcctgcgtaagtgggactacagttgtgcaccaccatgcccaactagttttttgtatttttagtagagagggggtttcgccatgttgcacagccttgtatcaaactcctggcctccagcagtctgcctgcgttggcctcccaaagtgttgggattacaggcaaaagccatggcATTTGGACTCA i calJac3.chr1 C 0 C 0 e mm10.chr19 38092970 28 - 61431566 I e canFam3.chr1 35339736 0 - 122678785 C a score=13095.000000 s hg38.chr9_GL383541v1_alt 144731 3 + 171286 TGG s panTro4.chr9 68704171 3 + 137840987 TGG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859377 3 + 135191526 TGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57899196 3 - 122973662 TGG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79829044 3 + 112192347 TGG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80908563 3 + 112612857 TGG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76958000 3 + 107442819 TGG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81222446 3 + 108555830 TGG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111457298 3 - 210400635 TGG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35339736 3 - 122678785 TGG i canFam3.chr1 C 0 C 0 e mm10.chr19 38092970 28 - 61431566 I a score=340400.000000 s hg38.chr9_GL383541v1_alt 144734 125 + 171286 GTACTTTAACCAGGAACTTTTATGAACTTTGACAGGCCTAGGGGCAGTCTGACCCCTTGGACTAACACAACCTTGTAGGTGGGTTTCCACACAGA-CCTCCTCCTAATCAACCA--------CCCC--CCTC----------AAAA s panTro4.chr9 68704174 125 + 137840987 GTACTTTAACCAGGAACTTTTATGAACTTTGACAGGCCTAGGGGCAGTCTGACCCCTTGGACTAACACAACCTTGTAGGTGGGTTTCCACACAGA-CCTCCTCCTAATCAACCA--------CCCC--CCTC----------AAAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859380 127 + 135191526 GTACTTTAACCAGGAACTTTTATGAACTTTGACAGGCCTAGGGGCAGTCTGACCCCTTGGACTAACACAACCTTGTAGGTGGGTTTCCACACAGA-CCTCCTCCTAATCAACCA--------CCCCCACCTC----------AAAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57899199 125 - 122973662 GTACTTTAACCAGGAACTTTTATGAACTTTGACAGGCCTAGGGCCAGTCTGACCCCTTTGACTGACACAACCTTGTAGGTGGGTTTCCACACAGA-CCCTCTCCTAATCAACTA--------CCCC--CCTT----------AAAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79829047 130 + 112192347 GTACTTTAATCAGGAACTTTTATGGACTTTGACAGGCCTAGGGGCAGTCTGGCCCCTTTGACTA--ATAACCTTCTGGCTGGGTTTGCACACAG----CAAACCTAATCAACGG--------CCTT--CCTCaaaaaaaaaaaaaa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80908566 123 + 112612857 GTACTTTAATCAGGAACTTTTATGGACTTTGACAGGCCTAGGGGCAGTCTGGCCCCTTTGACTA--ATAACCTTGTAGCTGGGTTTGCACACAG----CAAACCTAATCAACCA--------CCTT--CCTC-------aaaaaaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76958003 124 + 107442819 GTACTTTAATCAGGAACTTTTATGGACTTTGACAGGCCTAGGGGCAGTCTGGGCCCTTTGACTA--ATAACCTAGTAGCTGGGTTTGCACACAG----CAAACCTAATCAAcca--------cctt--ctca------aaaaaaaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81222449 126 + 108555830 GTACTTTAATCAGGAACTTTAATGGACTCTGACAGGCCTAGGGGCAGTCTGGCCCCTTTGACTAACATAACCTTGTAGCTGGGTTTGCCCACAG----CAAACCTAATCAACCA--------CCTT--CCTC------aaaaaaaa i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111457301 123 - 210400635 GTACTTTAACCAGGAACTTTTATGGAGTTTGACAGGCCC-GGGGTAGTCTGGCCCCTATGACTAACACAGCCTTGTAGCTGGGTTTCCACATAGA-CCCTCTCCTAATCAACCA--------GCC---CCTC----------AAAA i calJac3.chr1 C 0 C 0 s mm10.chr19 38092998 100 - 61431566 GTGCTATAACCAAGAATTATCA-------------------AGACTGTCCTGGCCCTTGGCCTAACACAACC--ATGATTGTATTTCCACACTAA-CCCTTTC----TTCACCC--------TCCC--CTTC----------AAAA i mm10.chr19 I 28 I 16 s canFam3.chr1 35339739 129 - 122678785 GTGCTTTAACCAGGAACTTTCACAGACTTCTACAGGCCTAGGGATAGTCTAGCTCCTCTGATTAACACAGCCTTGTGACTAGATTCCCATACAGACCCTCTACCCACCCCACTGTCCCTCTTCCCC--CCT--------------- i canFam3.chr1 C 0 C 0 a score=1408.000000 s hg38.chr9_GL383541v1_alt 144859 2 + 171286 AA s panTro4.chr9 68704299 2 + 137840987 AA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859507 2 + 135191526 AA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57899324 2 - 122973662 AA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79829177 2 + 112192347 aa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80908689 2 + 112612857 aa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76958127 2 + 107442819 ga i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81222575 2 + 108555830 aa i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111457424 1 - 210400635 A- i calJac3.chr1 C 0 I 301 e mm10.chr19 38093098 16 - 61431566 I e canFam3.chr1 35339868 0 - 122678785 C a score=163072.000000 s hg38.chr9_GL383541v1_alt 144861 48 + 171286 AAAAAAAAAACTTTAGAAGAGACTTAAAATTATATACTATGAGGAGCA s panTro4.chr9 68704301 47 + 137840987 AAAAAAAAA-CTTTAGAAGAGACTTAAAATTATATACTATGAGGAGCA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859509 48 + 135191526 AAAAAAAAAACTTTAGAAGAGACTTAAAATTATATACTATGAGGAGCA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57899326 45 - 122973662 AAAACAA---CTTTAGAAGAGACTTAAAATTATATACTATGAGGAGCA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79829179 48 + 112192347 aaaaaaaaaaCTTTAGAAGAGACTTAAAATTATATACTATGAGGAGCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80908691 48 + 112612857 aaaaaaaaaaCTTTAGAAGAGACTTAAAATTATATACTATGAGGAGCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76958129 48 + 107442819 aaaaaaaaaactttggaagAGACTTAAAATTATATACTATGAGGAGCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81222577 48 + 108555830 aaaaaaaaaaCTTTAGAAGAGACTTAAAATTATATACTATGAGGAGCA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111457726 48 - 210400635 aaaaaaaaaGCTGTAGAAGAGACTTAAAATGATATACTGTGAGGAGCA i calJac3.chr1 I 301 C 0 s canFam3.chr1 35339868 45 - 122678785 ---AAAATAACTTTAGAAGACAATTAAAATTGTAGGCTATGAAGAAAG i canFam3.chr1 C 0 C 0 e mm10.chr19 38093098 16 - 61431566 I a score=692519.000000 s hg38.chr9_GL383541v1_alt 144909 169 + 171286 TTTGCTCAGTGACCTTTTAGGTTCTGCTGCCTGTCAT---TATGTTGTTTCTAGAGAGCAGATCATTGTTTTTTTGAAAGGGAAAAAGATGAAAATAAAGAGGAGATTCTATTGTCCTTTAATAA--TTACAGTTTTCTAAAGCAGGAAATTGGAACAATAAATCCTTGATAAT s panTro4.chr9 68704348 169 + 137840987 TTTGCTCAGTGACCTTTTAGGTTCTGCTGCCTGTCAT---TATGTTGTTTCTAGAGAGCAGATCATTGTTTTTTTGAAAGGGAGAAAGATGAAAATAAAGAGGAGATTCTATTGCCCTTTAATAA--TTACAGTTTTCTAAAGCAGGAAATTGGAACAATAAATCCTTGATAAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859557 169 + 135191526 TTTGCTCAGTGACCTTTTAGGTTCTGCTGCCTGTCAT---TATGTTGTTTCTAGAGAGCAGATCATTATTTTTTTGAAAGGGAGAAAGATGAAAATAAAGAGGAGATTCTATTGCCCTTTAATAA--TTACAGTTTTCTAAAGCAGGAAATTGGAACAATAAATCCTTGATAAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57899371 166 - 122973662 TTTGTTCAGTGACCTTTTAGGTTCTGCTGCCTGTCAT---TATGTTGTTTCTAGAGAGCAGATCATTGGTTTTTTGAAAGGGAGAAATATGAAAAT---GAGGATATTCTATTGCCCTTTAATAA--TTACAGTTTTCTAAAGCAGGAAATTGGAACAATAAATCCTTGATAAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79829227 169 + 112192347 TTTGCTCAGTGACCTTTTAGGTTCTGCTGCCTGTCAT---TATGTTGTTTCTAGAGAGCAGATCATTGTTTTTTTGAAAGGGAGAAAGATGAAAATAAAGAGGAGATTCTATTGTCCTTTAATAA--TTACAGTTTTCTAAAGCAGGAAATTGGAACAATAAATCCTTGATAAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80908739 169 + 112612857 TTTGCTCAGTGACCTTTTAGGTTCTGCTGCCTGTCAT---TATGTTGTTTCTAGAGAGCAGATCATTGTTTTTTTGAAAGGGAGAAAGATGAAAATAAAGAGGAGATTCTATTGTCCTTTAATAA--TTACAGTTTTCTAAAGCAGGAAATTGGAACAATAAATCCTTGATAAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76958177 169 + 107442819 TTTGCTCAGTGACCTTTTAGGTTCTGCTGCCTGTCAT---TATGTTGTTTCTAGAGAGCAGATCAttgtttttttgaaagggagaaagatgaaaataaagaggAGATTCTATTGTCCTTTAATAA--TTATAGTTTTCTAAAGCAGGTAATTGGAACAATAAATCCTTGATAAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81222625 169 + 108555830 TTTGCTCAGTGACCTTTTAGGTTCTGCTGCCTGTCAT---TATGTTGTTTCTAGAGAGCAGATCATTGTTTTTTTGAAAGGGAGAAAGATGAAAATAAAGAGGAGATTCTATTGTCCTTTAATAA--TTACAGTTTTCTAAAGCAGGAAATTGGAACAATAAATCCTTGATAAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111457774 168 - 210400635 TTTGCTCGGTGACCTTTTAGGTTCTGCTGCCTGTCGT---CATGTTGTTTCTAGAGAGCAGATCATTGTTTTGTT-AAAGGGAAAAAGATGAAAATAAAGAGGAGATTCTCCTGCCCTTTAATAA--TTACAGTTTTCTAAAGCAGGAAATTGGAACAGTAAGTCCTTGATAAT i calJac3.chr1 C 0 C 0 s mm10.chr19 38093114 172 - 61431566 CTTGCCCAGCTTCCTCCTAAGTTCCTCTGCTTGCCATTAGTATCTTGCTCCTAGAAAGTAGAACATTATTTTTTAAATCAAGAAAAAGATGAAAATGTAGAGGTAATTCTATTACCCTCTGACTG--TTACAGTTTTGGGGCACGAGTACTTGCAACAACAAAGCCCTAAAAGT i mm10.chr19 I 16 I 560 s canFam3.chr1 35339913 170 - 122678785 TTTGCTCAGTTACTTTTTATGATCTGCTGCCCATTAT---TATGTTGTTTTGAGGGAGTAGATGATC-CTTTTTGGAAAGGGAGAAAAATGTAAACAAAGAAAAGATTCTATGGCCCTTTGACAAATTTGCAGTTTTCTGAAGCAGGAAATTGGAACAGTAGAGCCTTGAAAAT i canFam3.chr1 C 0 C 0 a score=7821.000000 s hg38.chr9_GL383541v1_alt 145078 2 + 171286 CC s panTro4.chr9 68704517 2 + 137840987 CC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859726 2 + 135191526 CC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57899537 2 - 122973662 CC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79829396 2 + 112192347 CC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80908908 2 + 112612857 CC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76958346 2 + 107442819 CC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81222794 2 + 108555830 CC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111457942 2 - 210400635 CC i calJac3.chr1 C 0 M 682 s canFam3.chr1 35340083 2 - 122678785 CT i canFam3.chr1 C 0 C 0 e mm10.chr19 38093286 560 - 61431566 I a score=222477.000000 s hg38.chr9_GL383541v1_alt 145080 81 + 171286 AGGGGATGATTATTCAGTTTGGGTATTAGTCCATCTGCCTTGCATTTCT-GCTCCTTTACCTTTTGTTTCCAGGGCTTCAGG- s panTro4.chr9 68704519 78 + 137840987 AGGGGATGATTATTCAGTTTGGGTATTAGTCCATCTGCCTTGCATTTCT-GCTCCTTTACCTTTTGTTTCCAGGGCTTC---- i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859728 78 + 135191526 AGGGGATGATTATTCAGTTTGGGTATTAGTCCATCTGCCTTGCATTTCT-GCTCCTTTACCTTTTGTTTCCAGGGCTTG---- i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57899539 78 - 122973662 AGGGGATGATTATTCAGTTTGGGTATTAGTCCATCGGCTTTGCATTTCT-GCTCCTTTACCTTTCGTTTCTAGGGCTTG---- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79829398 78 + 112192347 AGGGGATGATTATTCAGTTTGGGTATTAGTCCATCTGCCTTGTGTTTCT-GCTCCTTTACCTTTTGTTTCCAGGGCTTG---- i rheMac3.chr15 C 0 I 22 s macFas5.chr15 80908910 78 + 112612857 AGGGGATGATTATTCAGTTTGGGTATTAGTCCATCTGCCTTGTGTTTCT-GGTCCTTTACCTTTTGTTTCCAGGGCTTG---- i macFas5.chr15 C 0 I 3 s papAnu2.chr15 76958348 78 + 107442819 AGGGGATGATTATTCAGTTTGGGTATTAGTCCATCTGCCTTGCGTTTCT-GCTCCTTTACCTTTTGTTTCCAGGgcttg---- i papAnu2.chr15 C 0 I 3 s chlSab2.chr12 81222796 78 + 108555830 AGGGGATGATTATTCAGTTTGGGTATTAGTCCATCTGCCTTGCGTTTCT-GCTCCTTTACCTTTTGTTTCCAGGGCTTG---- i chlSab2.chr12 C 0 I 3 s canFam3.chr1 35340085 80 - 122678785 CGGGGATGATTATGTAGCTTGAGTTTTTGTCCATCTCTCTTGGTTTTTTGGCTCCTCTGCCTTTTGTTTCCAGAGCTTG---A i canFam3.chr1 C 0 C 0 e mm10.chr19 38093286 560 - 61431566 I e calJac3.chr1 111457944 682 - 210400635 M a score=-230.000000 s hg38.chr9_GL383541v1_alt 145161 8 + 171286 GCTTCTGG s panTro4.chr9 68704597 3 + 137840987 -----TGG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859806 3 + 135191526 -----AGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57899617 3 - 122973662 -----AGG i nomLeu3.chr1a C 0 C 0 s canFam3.chr1 35340165 2 - 122678785 ------GG i canFam3.chr1 C 0 C 0 e mm10.chr19 38093286 560 - 61431566 I e chlSab2.chr12 81222874 3 + 108555830 I e rheMac3.chr15 79829476 22 + 112192347 I e calJac3.chr1 111457944 682 - 210400635 M e papAnu2.chr15 76958426 3 + 107442819 I e macFas5.chr15 80908988 3 + 112612857 I a score=9555.000000 s hg38.chr9_GL383541v1_alt 145169 5 + 171286 ATAtt s panTro4.chr9 68704600 5 + 137840987 ATAtt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859809 5 + 135191526 ATAtt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57899620 5 - 122973662 ATAtt i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80908991 5 + 112612857 ATATT i macFas5.chr15 I 3 I 8 s papAnu2.chr15 76958429 5 + 107442819 atatt i papAnu2.chr15 I 3 I 8 s chlSab2.chr12 81222877 5 + 108555830 ATATT i chlSab2.chr12 I 3 I 8 e mm10.chr19 38093286 560 - 61431566 I e canFam3.chr1 35340167 0 - 122678785 C e rheMac3.chr15 79829476 22 + 112192347 I e calJac3.chr1 111457944 682 - 210400635 M a score=514084.000000 s hg38.chr9_GL383541v1_alt 145174 256 + 171286 tctttctttctt----ttttttttttttttttagacagagtcttgctctgtcacgaaggctggagtgaagtggcaccatcttgcctcactgcaacctttgcctcctgggttcaagtgactctcctgcctcagcctcctgatt-----agctgggactacaggcgtgagccaccatgcccagctaatttttgtatttatgtagagacaaggtttcgcaatgttggccaggctggttttgaactcctga-ctcaagtgatgcgcctgc s panTro4.chr9 68704605 256 + 137840987 tctttctttctt----ttttttttttttttttagacagagtcttgctctgtcacgaaggctggagtgaagtggcaccatcttgcctcactgcaacctttgcctcctgggttcaagtgactctcctgcctcagcctcctgatt-----agctgggactacaggcgtgagccaccatgcccagctaatttttgtatttatgtagagacaaggtttcgcaatgttggccaggctggttttgaactcctga-ctcaagtgatgcgcctgc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64859814 255 + 135191526 tctttc-----------ttttttttttttttgagacagagtcttgctctgtcacgtaggctgaagtgaagtggcaccatcttggctcactgcaacctttgcctcctgggttcaagcgactctcctgcctcagcctcttgattaaatcagctgggactacaggcgtgagccaccatgcccagctaatttttgtatttatgtagagacaaggtttcgcaatgttggccaggctggttttgaactcctgacctcaagtgatgcacctgc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57899625 248 - 122973662 tctttc-------------tttcttttttttgagacacagtcttgctctgtcacgtaggctggagtgaagtagcaccatcttggctcactgcaacctctgcctcctgggttcaagcgactctcctgcctcagcctcctgatt-----agctgggactacaggcgtgagccaccatgcccagctaatttttgtatttatgtagagacaaggttttgccatgttggccaggctggttttgaactcctgacctcaagtgatgtgcctgc i nomLeu3.chr1a C 0 M 100 s rheMac3.chr15 79829498 232 + 112192347 tttttctttttc----tttttttttttttttgagacagtgtcttgctc-------------------------aaccatcctggctcactgcaacctctgcctcctgggttcaagcgactctcctgcctcagcctcctgagt-----agctgggactataggcatgagccaccatgcccagctaatttttgtatttatgtagagacagggtttcaccatgttggtcaggctggtgtcaaacccatgacctcaagtgatctgcctgc i rheMac3.chr15 I 22 C 0 s macFas5.chr15 80909004 236 + 112612857 Tttttctttttctttttttttttttttttttgagacagtgtcttgctc-------------------------aaccatcctggctcactgcaacctctgcctcctgggttcaagcgactctcctgcctcagcctcctgagt-----agctgggactataggcatgagccaccatgcccagctaatttttgtatttatgtagagacagggtttcaccatgttggtcaggctggtttcaaacccatgacctcaagtgatctgcctgc i macFas5.chr15 I 8 C 0 s papAnu2.chr15 76958442 234 + 107442819 tttttctttttc--tttcttttttttttttcgagacagtgtcttgctc-------------------------aaccatcctggctcactgcaacctctgcctcctgggttcaagcgactctcctgcctcagcctcctgagt-----agctgggactacaggcatgagccaccatgcccagctaatttttgtatttatgtagagacagggtttcaccatgttggtcaggctggtttcaaacccctgacctcaagtgatctgcctgc i papAnu2.chr15 I 8 C 0 s chlSab2.chr12 81222890 232 + 108555830 tttttctttttc----tttttttttttttttgagacagtgtcttgctc-------------------------aaccatcctggctcactgcaacctctgcctcctgggttcaagcgactctcctgcctcagcctcctgcgt-----agctgggactacaggcatgagccaccatgcccagctaatttttggatttatgtagagacagggtttcaccatgttggccaggctggtttcaaactcctgacctcaagtgatctgcctgc i chlSab2.chr12 I 8 C 0 e mm10.chr19 38093286 560 - 61431566 I e canFam3.chr1 35340167 0 - 122678785 C e calJac3.chr1 111457944 682 - 210400635 M a score=50922.000000 s hg38.chr9_GL383541v1_alt 145430 26 + 171286 cttggcctcccaaagtgctgggatta s panTro4.chr9 68704861 26 + 137840987 cttggcctcccaaagtgctgggatta i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64860069 26 + 135191526 cttggcctcccaaagtgctgggatta i ponAbe2.chr9 C 0 C 0 s rheMac3.chr15 79829730 26 + 112192347 cttggcctcccaaagtgctgggacta i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80909240 26 + 112612857 cttggcctcccaaagtgctgggacta i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76958676 26 + 107442819 cttggcctcccaaagtgctgggacta i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81223122 26 + 108555830 cttggcctcccaaagtgctgggacta i chlSab2.chr12 C 0 C 0 e mm10.chr19 38093286 560 - 61431566 I e canFam3.chr1 35340167 0 - 122678785 C e calJac3.chr1 111457944 682 - 210400635 M e nomLeu3.chr1a 57899873 100 - 122973662 M a score=58394.000000 s hg38.chr9_GL383541v1_alt 145456 26 + 171286 taggcgtgagccactgtgcctggccC s panTro4.chr9 68704887 26 + 137840987 taggcgtgagccactgtgcctggccC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64860095 26 + 135191526 taggcgtgagccactgtgcctggccC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57899973 26 - 122973662 TGGGTGTGAGCCGCCGTGGCTGGCCC i nomLeu3.chr1a M 100 C 0 s rheMac3.chr15 79829756 26 + 112192347 taggcgtgagcccctgcacctggccC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80909266 26 + 112612857 taggcgtgagcccctgcacctggccC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76958702 26 + 107442819 taggcgtgagcccctgcacctggccc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81223148 26 + 108555830 taggtgtgagcccctgcgcctggccC i chlSab2.chr12 C 0 C 0 e mm10.chr19 38093286 560 - 61431566 I e canFam3.chr1 35340167 0 - 122678785 C e calJac3.chr1 111457944 682 - 210400635 M a score=87795.000000 s hg38.chr9_GL383541v1_alt 145482 29 + 171286 ATATTTCATCGCTTGTTAGAACAATCACC s panTro4.chr9 68704913 29 + 137840987 ATATTTCATCGCTTGTTAGAACAATCACC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64860121 29 + 135191526 ATATTTCATTGCTTGTTAAAACAATCACC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57899999 29 - 122973662 ATATTTCATTGCTTGGTAGAACAATCACC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79829782 29 + 112192347 ATATTTCATTGCTTGTTAGAACAACCACC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80909292 29 + 112612857 ATATTTCATTGCTTGTTAGAACAACCACC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76958728 29 + 107442819 atatttCATTGCTTGTTAGAACAACCACC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81223174 29 + 108555830 ATATTTCATTGCTTGTTAGAACAACCACC i chlSab2.chr12 C 0 C 0 s canFam3.chr1 35340167 29 - 122678785 ATATTTCATTGCTTGTTAGAACCATCTCC i canFam3.chr1 C 0 C 0 e mm10.chr19 38093286 560 - 61431566 I e calJac3.chr1 111457944 682 - 210400635 M a score=248039.000000 s hg38.chr9_GL383541v1_alt 145511 75 + 171286 TGGTGATGTGTAGAGGAAGAGAAAACTAA----ATCTAGTCCATTTTTAGAACA---------GTCTTGTTCTGAGTGGAGAGAATAA s panTro4.chr9 68704942 75 + 137840987 TGGTGATGTGTAGAGGAAGAGAAAACTAA----ATCTAGTCCATTTTTAGAACA---------GTCTTGTTCTGAGTGGAGAGAATAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64860150 75 + 135191526 TGGTGATGTGTAGAGGAAGAGAAAACTAA----ATCTGGTCCATTTTTAGAACA---------GTCTTGTTCTGAGTGGAGAGAATAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57900028 75 - 122973662 TGGTGATGTGTAGAGGAAGAGAAAACTAA----ATCTAGTCCATTTTTAGAACA---------GACTTGTTCTGAGTGGAGAGAATAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79829811 75 + 112192347 TGGTGATGTGTAGAGGAAGAGAAAATGAA----ATCTAGTCCATTTTTAGAACA---------GTCTTGGTCTGAGTGGAGAGAATAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80909321 75 + 112612857 TGGTGATGTGTAGAGGAAGAGAAAATGAA----ATCTAGTCCATTTTTAGAACA---------GTCTTGGTCTGAGTGGAGAGAATAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76958757 75 + 107442819 TGGTGATGTGTAGAGGAAGAGAAAACGAA----ATCTAGTCCATTTTTAGAACA---------GTCTTGGTCTGAGTGGAGAGAATAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81223203 75 + 108555830 TTGTGATGTGTAGAGGAAGAGAAAACGAA----ATCTAGTCCATTTTTAGAACA---------GTCTTGGTCTGAGTGGAGAGAATAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111458626 70 - 210400635 TGCTGATGTGTAGAG-----GAAAACTAA----ATCTAGGTCATTTTTAGAACA---------ATCTTGTTCTGAGTAGATAGAATGA i calJac3.chr1 M 682 C 0 s canFam3.chr1 35340196 88 - 122678785 CAGTGACAAAGAGAGGAAGAGAAAACTAACTCCATCTAGTCTGCTTATAAAACATCAACAACTGTCCTGTGCTGATTGGGAAGAATAA i canFam3.chr1 C 0 C 0 e mm10.chr19 38093286 560 - 61431566 I a score=1092906.000000 s hg38.chr9_GL383541v1_alt 145586 399 + 171286 ATAGGTTGAAATCGAC-TGTGAATCC-AAAAATCAGGTAACAGATctggtca---------------------cagtgacttatcctgtaatctcagcactctgggaggctgaggcaggcagatcacttgagtccaggagttcgagaccagcctgggcaacaaggtgaaaccctgtctct-acaaaaaatacaaaaattagccgggtgtggtagtgcacgcctgtagttccaactatttgggaggctgaagcagggggatcacttgagcccaggaggctgaggttgcagtgagccaagatcacaccactgtactccagcctgggcacagagtgagactctgtctcaaaaaaaaa---------aaaaaaaaaaaaaaaa--TCCAACTCCGAAAGTGCCTAGCACAAGGACTGCACATAACAGGAATTTAGTTA s panTro4.chr9 68705017 401 + 137840987 ATAGGTTGAAATCGAC-TGTGAATCC-AAAAATCAGGTAACAGATctggtca---------------------cagtgacttatcctgtaatctcagcactctgggaggctgaggcaggcagatcacttgagtccaggagttcgagaccagcctgggcaacaaggtgaaaccctgtctct-acaaaaaatacaaaaattagccgggtgtggtggtgcacgcctgtagttccaactatttgggaggctgaagcagggggatcacttgagcccaggaggctgaggttgcagtgagccaagatcacaccactgtactccagcctgggcacagagtgagactctgtctcaaaaaaaaa---------aaaaaaaaaaaaaaaaaaTCCAGCTCTGAAAGTGCCTAGCACAAGGACTGCACATAACAGGAATTTAGTTA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64860225 396 + 135191526 ATAGATTGAAATCGAC-TGTGAATCC-AAAAATCAGGTAACAGATctggtca---------------------caatgacttatcctgtaatcccagcactctgggaggctgaggcaggcagatcgcttgagtccaggagttcgagaccagcctgggcaacaaggtgaaaccctgtctct-acaaaaaatacaaaaattagccaggtgtggtggtgcatgcctgtagtcccaactatttgggaggctgaagcagggggatcacttgagcccaggaggttgaggttgcagtgagccaagatcacaccactgtactccagcct-ggcacagagtgagactctgtctcaaaaaaaaa---------aaaaaaaaaaaaaaa---TCCAGCTCTGAAagtgcctagcacaaggactgcacataacaggaatttaa-ta i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57900103 398 - 122973662 ATAGGTTGAAATCGAC-AGTGAATCC-AAAAATCAGGTAACAGATTTGGTCA---------------------CAATGACTTCTcctgtaatcccagcactctgggaggccaaggcaggcagatcgcttgagcccaggagttcgaggccagcctgggcaacaaggtgaaacactgtctctaaaaaaaaaaacaaaaattagccgggtgtggtggtgcatgcctgtagtcccaactatttgggaggctgaagcagggggatcacttgagcccaggaggttgaggttgcagtaagccaagatcataccactgtactccagcctgggcacagagttggactctgtctcaaaaaaaaa---------aaaaaaaaaaaaaaT---TCCAGCTCTGAAAGTGCCTAGCACAAGGACTGCACATAACAGGAATTTAG-TA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79829886 410 + 112192347 ATAGGTTGAAATCGAC---TGAATCC-AAAAATTAGGTAACAGATCTGGTCACAATGACTTATCCTGTAATCCCAATGACTTATcctgtaatcccagcactctgggaggccgagacaggcagatcgcttgagcccaggagttcaagaccagcctgggcaacaaggtgaaaccctgtctct-ac-aaaaatacaaaaattaactgggtatggtggtgcatgcctgtagtcccaactatttgggaggttgaagcagggggatcacttgagcccaggaggttggggttgcagtgggctaggatcacaccactgcactccagcctgggcacagagtaagagtctgtctcaacaacaac---------aacaacaaaa--------TCCAGCTCTGAAagtgcctagcacaaggactgcacatgacaggaatttag-ta i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80909396 412 + 112612857 ATAGGTTGAAATTGAC-AGTGAATCC-AAAAATTAGGTAACAGATCTGGTCACAATGACTTATCCTGTAATCCCAATGACTTATcctgtaatcccagcactctgggaggccgagacaggcagatcgcttgagcccaggagttcaagaccagcctgggcaacaaggtgaaaccctgtctct-ac-aaaaatacaaaaattaactgggtatggtggtgcatgcctgtagtcccaactatttgggaggttgaagcagggggatcacttgagcccaggaggttggggttgcagtgagctaggatcacaccactgcactccagcctgggcacagagtgagagtctgtctcaacaacaac---------aacaacaaaa--------TCCAGCTCTGAAAGTGCCTAGCACAAGGACTGCACATGACAGGAATTTAG-TA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76958832 391 + 107442819 ATAGGTTGAAATTGAC-AGTGAATCC-AAAAATTAGGTAACAGATCTGGTCA---------------------CAATGACttatcctgtaatcccagcactctgggaggccgagacaggcagatcgcttgagcccaggagttcaagaccagcctgggcaacaaggtgaaaccctgtctct-ac-aaaaatacaaaaatgaactgggtatggtggtgcatgcctgtagtcccaactatttgggaggttgaagcagggggatcacttgagcccaggaggttggggttgcagtgagctaggatcacaccactgcactccagcctgggcacagagtgagagtctgtctcaacaacaac---------aacaacaaaa--------tccagcTCTGAAAGTGCCTAGCACAAGGACTGCACATGATAGAAATTTAG-TA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81223278 388 + 108555830 ATAGGTTGAAATTGAC-AGTGAATCC-AAAAATTAGGTAACAGATctggtca---------------------caatgacttatcctgtaaacccagcactctgggaggccaagataggcagatcgcttgagcccaggagttcaagaccagcctgggcaacaagatgaaagcttgtctct-ac-aaaaatacaaaaattaactgggtatggtggtgtgtgcctgtagtcccaactatttgggaggttgaagcagggggatcacttgagcccaggaggttggggttgcagtgagctaggatcacaccactgcactccagcctgggcacagagtgagagtctgtct---caacaac---------aacaacaaaa--------TCCAGCTCTGAAAGTGCCTAGCACAAGGACTGCACATGACAGGAATTTAG-TA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111458696 398 - 210400635 ATAGATTGAAATCAACAAGTGAATCCAAAAAATCAGGTAGCAGATCTGGGAA---------------------CAATGACTTATTctgtaatcccagcactttgggaggctgaggcaggcagattgcttgagcccaggagtttgagaccagcctgggcaacaaagtaaaaccctgcctct-acaaaagatgtaaaaattagccaggtgtggtggtgcatgcctgtag----------ttgggaggctgaaggaggagaatcacttgagcccaggggg-tagtcttgcagtgacccaagatcacatcattacactgcagcctgggcacagagcaagactcggtttcaaaaaaaaCGGGGAGGGGAGAGAGAGAGAGAAA---TCCATATCTGAAAGTGCCTAGGACAAGGACTGCACATAACAGAAATTTCGTTA i calJac3.chr1 C 0 C 0 e mm10.chr19 38093286 560 - 61431566 I e canFam3.chr1 35340284 0 - 122678785 C a score=653199.000000 s hg38.chr9_GL383541v1_alt 145985 190 + 171286 AGTGAGGTTTTATAATCCACACAGCAGTTTTCTACTACTCTTTACc-------------agtggttctc----agggaga-------ttttcccccagtggacatttggcaatgtctgaagaagtttttgattgtcacgacttggcagtgatgctggcatctaatgagtagaggttacagttgctgctaaacatcctacaatgcacagggcagt s panTro4.chr9 68705418 190 + 137840987 AGTGAGGTTTTATAATGCACACAGCAGTTTTCTACTACTCTTTACc-------------agtggttctc----agggaga-------ttttcccccagtggacatttggcaatgtctgaagaagtttttgattgtcacgacttggcagtgatgctggcatctaatgagtagaggttacagttgctgctaaacatcctacaatgcacagggcagt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64860621 190 + 135191526 agtGAGGTTTTATAATCCACACAGCAGTTTTCTACTACTCTTGACc-------------agtggttctc----agggaga-------ttttcccccagtggatatttggcaatgtctgaagaactttttgattttcacaacttggcagtgatgctggcatctaatgagtagaggttacagttgctgctaaacatcctacaatgcacagggcagt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57900501 190 - 122973662 AGTGAGGTTTTATAATCCACACAACAGTTTTCTACTACTCTTGACc-------------agtagttctc----agggaga-------ttttcccccaatggacatttggcaatgtctgaagaaatttttgattgtcacgacttggcagtgatgctggcatctaatgagtggaggttacagttgctgctaaacatcctacaacgcacagggcagt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79830296 192 + 112192347 agtgAGGTTTTATAATCCACACAACAGTTTTCTACTATTCTTGACc-------------agtagttctc----agggaga-----ttttttcccccagtggacctttggcaatgtctgaagaagtttttgattgtcacaacttggcagtgatgctggcatctaatgagtagaggttacagttgctgctaaacatcctacaatgcatagggcagt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80909808 192 + 112612857 AGTGAGGTTTTATAATCCACACAACAGTTTTCTACTATTCTTGACc-------------agtagttctc----agggaga-----ttttttcccccagtggacatttggcaatgtctgaagaagtttttgattgtcacaacttggcagtgatgctggcatctaatgagtagaggttacagttgctgctaaacatcctacaatgcatagggcagt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76959223 192 + 107442819 AGTGAGGTTTTATAATCCACACAACAGTTTTCTACTATTCTTGACC-------------AGTGGTTCTC----AGGGAGA-----TTTTTTCCCCCAGtggacatctggcaatgtctgaagaagtttttgattgtcacaacttggCAGTGATGCTGGCATTTAATGAGTAGAGGTTACAgttgctgctaaacatcctacaatgcataggGCAGT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81223666 192 + 108555830 AGTGAGGTTTTATAATCCACACAACAGTTTTCTACTATTCTTGACc-------------agtggttctc----agggaga-----ttttttcccccagtggacatttggcaatgtctgaagaagtttttgattgtcacaacttggcagtgatgttggcatctaatgagtagaggttacagttgctgctaaacatcctacaatgcatagggcagt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111459094 193 - 210400635 AGTGGGGTTTTATAACCCACACAACAGTTTTCTACTACTCTTGACc-------------agtggttctcagctagggaga-------ttttcccctgatggatatttggcagtgtctg-aggagtttttgattgtcatgacttggcagtgatgctggcatctaatgaatagaggttagacttgctactaaacatcctgcaatccacaaggcagt i calJac3.chr1 C 0 C 0 s canFam3.chr1 35340284 209 - 122678785 AGTGAGG-TTTATCATCCACCCAGCAGTGTTTTACCACCCCCCACCCACCATAGGTAGAGGTACCTCTG----GCTGAgaggtaactttgcccctcaagggacatttggcaatgtctccatctatttttgattgtctcaacttgggggtgatactgttatctagtgggtagagaccagcgttgctgcttaacatcctgcaatgcaTCAGAGAGT i canFam3.chr1 C 0 I 483 e mm10.chr19 38093286 560 - 61431566 I a score=21596.000000 s hg38.chr9_GL383541v1_alt 146175 7 + 171286 cctccat s panTro4.chr9 68705608 7 + 137840987 cctccat i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64860811 7 + 135191526 cctacgt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57900691 7 - 122973662 cctccat i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79830488 7 + 112192347 cctccat i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80910000 7 + 112612857 cctccat i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76959415 7 + 107442819 CCTCCAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81223858 7 + 108555830 cctccat i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111459287 6 - 210400635 cctcc-t i calJac3.chr1 C 0 C 0 s canFam3.chr1 87337835 7 + 122678785 cctccac i canFam3.chr1 T 21811 C 0 e mm10.chr19 38093286 560 - 61431566 I a score=1193668.000000 s hg38.chr9_GL383541v1_alt 146182 327 + 171286 aacaaagaattat--ctggc-----------cc-aaaacgtcagtagtgctgaggtagcaatactctgTTGTGGATTTTAAAAAGCATGTATACTATGTATTTTTAGTATAGTAGAGAGTAAGTTAAGTAATATTGTTGATCCCTCCTTGACTGTATTTAAAATTATTTCTTTGCAAATATGTTTTTACAGCTCTCCTTTCATTGCCTGTTTGTGTTTCC------AGTCTAGGCAGATTTCCTCGGCTATGAATATTCTCCATCAGGACAAACATTTTAAAGTATTATCAGAACCTAAGGACTGGGATCTTG-AGTACATGGAGACA--TTGATTTACATAAATTTAAT s panTro4.chr9 68705615 327 + 137840987 aacaaagaattat--ctggc-----------cc-aaaacgtcagtagtgctgaggtagcaatactctgTTGTGGATTTTAAAAAGCATGTATACTATGTATTTTTAGTATAGTAGAGAGTAAGTTAAGTAATATTGTTGATCCCTCCTTGACTGTATTTAAAATTATTTCTTTGCAAATACGTTTTTACAGCTCTCCTTTCATTGCCTGTTTGTGTTTCC------AGTCTAGGCAGATTTCCTCGGCTATGAATATTCTCCATCAGGACAAACATTTTGAAGTATTATCAGAACCTAAGGACTGGGATCTTG-AGTACATGGAGACA--TTGATTTACATAAATTTAAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64860818 327 + 135191526 aacaaagaatttt--ctggc-----------cc-aaaacgtcagtagtgctgaggtagcaatactctgTTGTGGATTTTAAAAAGCATGTATACTATGTATTTTTAGTATAGTAGAGAGTAAGTTAAGTAATATTGTTGATCCTTCCTTGACTGTATTTAAAATTATTTCTTTGCAAATATGTTTTTACAGCTCTCCATTCATTGCCTGTTTGTGTTTCC------AGCCTAGGCAGATTTCCTCAGCTATGAATATTCTCCATCAGGACAAACATTTTAAAGTATTATCAGGACCTAAGGACTGGGATCTTG-AGTAGATGGAGACA--TTGATTTACATAAATTTAAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57900698 331 - 122973662 aacaaagaattat--ccagc-----------cc-aaaaagtcagtagtgctgaggtagcaatactctgTTGTGGATTTTAAAAAGCATGTATACTATGTATTTTTAGTACAGTAGAGAGTAAGTTAAGTAATATTGTTGATCCTTCCTTGACTGTATTTAAAATTATTTCTTTGCAAATATGTTTTTACAGCTCTCCATTCATTGCCTATTTGTGTTTCC--AGTTAGTCTAGGCAGATTTCCTCAGCTATGAATATTCTCCATCAAGACAAACATTTTAAAGTATTATCAGGACCTAAGGACTGGGATCTTG-AGTAGATGGAGACA--TTGATTTACATACATTTAAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79830495 329 + 112192347 aac--agaattat--ctggc-----------ct-aaaacgtcagtagtgctgaggtagcaatactctgTTGTGGATTTTTAAAAGCATGTATACTATGTATTTTTAGTACAGTAGAGAGTAAGTTGAGTAATATTGTTGATCCTTCCTTGACTGTACTTAAAATTATTTCTTTGCAAATATGTTTTTACAGCTCTCCATTCACTGCCTGTTTGTGTTTCC--AGTCAGTCTAGGCAGATTTCTTCAGCTATGAATATTCTCCATCAAGACAAACATTTTAAAGTATTATCAGTACCTAAGGACTGGGATCTTC-AGTAGATGGAGACA--TTGATTTACATAAATTTAAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80910007 329 + 112612857 aac--agaattat--ctggc-----------ct-aaaacgtcagtagtgctgaggtAGCAATACTCCGTTGTGGATTTTTAAAAGCATGTATACTATGTATTTTTAGTACAGTAGAGAGTAAGTTGAGTAATATTGTTGATCCTTCCTTGACTGTACTTAAAATTATTTCTTTGCAAATATGTTTTTACAGCTCTCCATTCACTGCCTGTTTGTGTTTCC--AGTCAGTCTAGGCAGATTTCTTCAGCTATGAATATTCTCCATCAAGACAAACATTTTAAAGTATTATCAGTACCTAAGGACTGGGATCTTC-AGTAGATGGAGACA--TTGATTTACATAAATTTAAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76959422 329 + 107442819 AAC--AGAATTAC--CTGGC-----------CC-AAAACGTCAGTAGTGCTGAGGTAGCAATACTCTgttgtggatttttaaaagcatgtatactatgtatttttagtacagtagAGAGTAAGTTGAGTAATATTGTTGATCCTTCCTTGACtgtacttaaaattatttctttgcaaatatgtttttataGCTCTCCATTCACTGCCTGTTTGTGTTTCC--AGTCAGTCTAGGCAGATTTCTTCAGCTATGAATATTCTCTATCAAGACAAACATTTTAGAGTATTATCAGTACCTAAGGACTGGGATCTTC-AGTAGATGGAGACA--TTGatttacataaatttaat i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81223865 329 + 108555830 aac--agaattat--ctggc-----------cc-aaaacgtcagtagtgctgaggtagcaatactctgTTGTGGATTTTTAAAAGCATGTATACTATGTATTTTTAGTACAGTAGAGAGTAAGTTAAGTAATATTGTTGATCCTTCCTTGACTGTACTTAAAATTATTTCTTTGCAAATATGTTTTTACAGCTCTCCATTCACTGCCTGTTTGTGTTTCC--AGTTAGTCTAGGCAGATTTCTTCAGCTATGAATATTCTCCATCAAGACAAACATTTTAAAGTATTATCAGTACCTAAGGACTGGGATCTTC-ATTAGATGGAGATA--TTGATTTACATAAATTTAAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111459293 330 - 210400635 aacaaagaattat--ctggc-----------cc--aaacatcagtagtaccaaggtaagaataccctgTTGTGGATATTAAAAAGCATGTATACTATCTATTTTTAGTATAGTAGAGAGTAAGTTAAGTAATATTGTTGATCCTTCCTTGACTGTATTTAGAATTATTTCTTTGCAAACATGTTTTTACAGCTCTCCATTTACTGCCTATTTGTGTTTCC--AGTTAGTCTAGATAGATTTCCTCAGCTATGAATATTCTCCATCTAGACAAACATTTTAAAGTATTATCTGTACCTAAGGATGGGGATCTTT-AGTAGATGAAGGCA--TTGATTTACGTAAATTTAAT i calJac3.chr1 C 0 C 0 s mm10.chr19 38093846 293 - 61431566 AATGCAGAGTCGT--CTGGC-----------TTTAAAATATCAATAG----------------CACTTTTGTGAAGA--AAAGAATATGTGTGATTTTTTTTCTTAACACAATGTAGACTAAGTTAAATAGTGTTATCTGCTGTTACTTAACTATAC-----------TATTTGCAAGAATATTTATGTGTTTCTCCATTTTCTGCGTATTCATTTTCAA--AGCTAGTCTAGAGAGGTCTCTTCAATGGTGAATATTTTCCAGAAAAACAAA-ATTCTCAAGCATCATTGGTACCCAAGAGTCAAAACCTTC----------AGACA--TTGCAGCACACACATTTAAT i mm10.chr19 I 560 I 14 s canFam3.chr1 87337842 343 + 122678785 aacaaacgattatcactaacaattttaaacacc-aaaatatcagtagtgctgagattggaacacTGTGCTGTAGATA--AACGAGCACGTGCAATGCCTCTTTTAAGTATGATAAA----ATGTTAAGTAATATTGTCGATCCTTACTTGACTGTATTTAAAATTACTTGTTTGCAAATATGTTTACGTAGCTCTCAAGTTACTGCCTATTTGTGTTGCCAAAATTAGTCTAGGTAGGGCTCCTCTGCAAGGAATATTCTCTATCAAAACAAAAATTGCAAAGTATCACAAGCACCTAAGGACTGGGACCTTTAAATACACTGAAACAACATGATCTATGCAGATCTCAT i canFam3.chr1 C 0 C 0 a score=319198.000000 s hg38.chr9_GL383541v1_alt 146509 92 + 171286 TTGTCCCTAACTTTTAAGAGATTTGCATAAAATCAGGAATACCTTTCTAAGGG--ATATCACTTTACTTGGCCCCTCATCTTCTTTCCCCttct s panTro4.chr9 68705942 92 + 137840987 TTGTCCCTAACTTTTAAGAGATTTTCATAAAATCAGGAATACCTTTCTAAGGG--ATATCACTTTACTTGGCCCCTCATCTTCTTTCCCCCTCt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64861145 92 + 135191526 TTGTCCCTAACTTTTAAGAGATTTGCATAAAATCAGGAATACCTTTCTAAGGG--ATATCACTTTACTTGGCCCCTCATCTTCTTTCCCCCTCt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57901029 92 - 122973662 TTGTTCCTAACTTTTAAGAGATTTGCATAAAATCAGGAATTCCTTTCTAAGGG--ATATCACTTTACTTGGCCCCTCATCTTCTTTCCCCCTCT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79830824 92 + 112192347 TTGTCTCTAACTTCTAAGAGATTTGCATAAAATCAGGAATACCTTTCTAAGAG--ATATCACTTTACTTGGTCCCTCATCTTCTTCCCCCCTCt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80910336 92 + 112612857 TTGTCTCTAACTTCTAAGAGATTTGCATAAAATCAGGAATACCTTTCTAAGAG--ATATCACTTTACTTGGTCCCTCATCTTCTTCCCCCCTCt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76959751 92 + 107442819 ttgtctctAACTTCTAAGAGATTTGCATAAAATCAGGAATACCTTTCTAAGAG--ATATCACTTTACTTGGTCCCTCATCTTcttcccccctct i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81224194 92 + 108555830 TTGTCTCTAACTTCTAAGAGATTTGCATAAAATCAGGAATACCTTTCTAAGAG--ATATCACTTTACTTGGTCCCTCATCTTCTTCCCCCCTCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111459623 92 - 210400635 TTGTCCCTAACTTTGAAGAGATTTGCATAAAATCAAGAATACCTTTCTAAGGG--ATATGACTTTATTTGGACCATAAGCTTCTCCCCTGCTCC i calJac3.chr1 C 0 C 0 s canFam3.chr1 87338185 90 + 122678785 TTGCCATTAAGTTTTAGGAGATTTGCATAAAATCAGGAACACCTGTCTAAGGGATATATTATTTCACTTTGTTCCTCGTCATCT----CCTTCT i canFam3.chr1 C 0 n 0 e mm10.chr19 38094139 14 - 61431566 I a score=832791.000000 s hg38.chr9_GL383541v1_alt 146601 273 + 171286 tttttttaa-ttaattgtttttgagagacagggtctcactctgtcatctaggctggagtacagtggcgtgatcatggctcactgcagcctccaactcctgggttcaagagagcttcccgcctcagcctttcaagtacctggactacaagcgcacacagctaatttttaaaattcttttgtagagatggaacctctctatgctgcccaggttgatcttcaactcctggcctcaagtgatcctactgtctcagcctcccaaagtgctgggattata s panTro4.chr9 68706034 273 + 137840987 tttttttaa-ttaattgtttttgagagacagggtctcactctgtcatctaggctggagtacagtggcgtgatcatggctcactgcagcctccaactcctgggttcaagagagcttcccgcctcagcctttcaagtacctggactacaagcgcacacagctaatttttaaaattcttttgtagagatggaacctctctatgctgcccaggttgatcttgaactcctggcctcaagtgatcctactgtctcagcctcccaaagtgctgggattata i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64861237 273 + 135191526 tttttttaa-ttaattgtttttgagagacagggtctcactctgtcatctaggctggagtacagtggcatgatcatggctcactgcagcctccaactcctgggttcaagagagcttcccgcctcagcctttcaagtagctggactacaagtgcacacagctaatttttaaaattcttttgtagagatggagcctctctatgctgcccaggttgatcttgaactcctggcgtcaagtgatcctactgtctcagcctcccaaagtgctgggattata i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57901121 273 - 122973662 TTTTTTTAA-TTAACTGtttttgagagacagggtctcactctgtcatctaggctggagtacagtggcatgatcatgcctcactgcagcctccaactcctgggttcaagagagcttcccgcctcagcctttcaagtagctggactacaagtgcacacagctagtttttaaaattcttttgtagagatgaagcctctctatgctgcccaggttgatcttgaactcctggcctcaagtgatcctactgtctcagcctctcaaagtgctgggattata i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79830916 262 + 112192347 tttttttaa------------ttagagacaaggtctcactctgtcatctaggctggagtacagtggcatgatcatggttcactgcagcctccaacttctgggttcaagagagcttcctgcctcagtctttcaagtagctggactacaagtgcacatagctaatttttaaaattcttttgtagagatggagcctctctatgctgcccaggttgatcttgaactcctggcctcaagtgatcctactgtctcgccctcccaaagtgctgggattata i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80910428 273 + 112612857 tttttttaa-ttaattgttttttagagacagggtctcactctgtcatctaggctggagtacagtggcatgatcatggttcactgcagcctccaacttctgggttcaagagagcttcccgcctcagtctttcaagtagctggactacaagtgcacatagctaatttttaaaattcttttgtagagatggagcctctctatgctgcccaggttgatcttgaactcctggcctcaagtgatcctactgtctcaccctcccaaagtgctgggattata i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76959843 273 + 107442819 tttttttaa-ttaattgttttttagagacagggtctcactctgtcatctaggctggagtacagtggcatgatcatggttcactgcagcctccaactcctgggttcaagagagcTTCCCGCCTCAGTCTTTTAAGTAGCTGGACTACAAGTGCAcatagctaattttaaaaattcttttgtagagatggagcctctctatgctgcccaggttgatcttgagctcctggcctcaagtgatcctactgtctcaccctcccaaagtgctgggattata i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81224286 273 + 108555830 TTTTTTTAA-TTAATTGttttttagagacagggtctcattctgtcatctaggctggagtacagtggcatgatcatggttcactgcagcctccaactcctgggttcaagagggcttcccgcctcagtctttcaagtagctggactacaagtgcatatagctaatttttgaaattcttttgtagagatggagcctctctatgctgcccaggttgatcttgaactcctggcctcaagtgatcctactgtctcaccctcccaaagtgctgggattata i chlSab2.chr12 C 0 I 22 s calJac3.chr1 111459715 269 - 210400635 ttttttaaaattaattattttCTAGTgatagggtc----tctgtcatctaggctggagtatagtggcatgatcaaagcttactgtagccttcaactcctgggttcaaaagagtttccagcctcagcctttcaagtagctggactacaagtgcatacagctaatttttaaaattcttttgtagatatggagcctctctgtgctgcccagtttgatcttgaactcctggcctcaggtgatcctg-tgtctcagtctcacaaagtgctgggattata i calJac3.chr1 C 0 C 0 e mm10.chr19 38094139 14 - 61431566 I e canFam3.chr1 87338275 0 + 122678785 I a score=6489.000000 s hg38.chr9_GL383541v1_alt 146874 7 + 171286 gatgtga s panTro4.chr9 68706307 7 + 137840987 gatgtga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64861510 7 + 135191526 ggcgtga i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57901394 7 - 122973662 ggtgtga i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79831178 7 + 112192347 tgcatga i rheMac3.chr15 C 0 I 15 s macFas5.chr15 80910701 7 + 112612857 tgcatga i macFas5.chr15 C 0 I 15 s papAnu2.chr15 76960116 7 + 107442819 tgcatga i papAnu2.chr15 C 0 I 15 s calJac3.chr1 111459984 6 - 210400635 ggcatg- i calJac3.chr1 C 0 C 0 e mm10.chr19 38094139 14 - 61431566 I e chlSab2.chr12 81224559 22 + 108555830 I e canFam3.chr1 87338275 0 + 122678785 I a score=148828.000000 s hg38.chr9_GL383541v1_alt 146881 80 + 171286 ---------gccTataa-----tta---atataattaata-----tttaatttaatatttaatata--atatttaatatttaaGAGGGTATGGTACCCTCTTAA s panTro4.chr9 68706314 80 + 137840987 ---------gccTGtaa-----tta---atataattaata-----tttaattcaatatttaatata--atatttaatatttaaGAGGGTATGGTACCCTCTTAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64861517 80 + 135191526 ---------gccTATAAttaattta---atataattaata-----tttaatttaatatt-----ta--atatttaatatttaaGAGGGTATGGTACCCTCTTAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57901401 88 - 122973662 ---------gcctataattaatttaattatataattaatataatttttaatttaatatt-----ta--atatttgatatttaaGAGGGTATGGTACCCTCTTAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79831200 71 + 112192347 ---------GCCtatat-----tta---at---attaatt-----tttaatttaatatt-----taatatatttaatatttaaGAGGGTATGGTACCCTCT--- i rheMac3.chr15 I 15 C 0 s macFas5.chr15 80910723 62 + 112612857 ---------GCCTatat-----tta---at---attaatt-----tttaattta--------------atatttaatatttaaGAGGGTATGGTACCCTCT--- i macFas5.chr15 I 15 C 0 s papAnu2.chr15 76960138 71 + 107442819 ---------gcctatat-----tta---at---attaata-----tttaatttaatatt-----taatatatttaatatttaagagggtatggtaccctct--- i papAnu2.chr15 I 15 C 0 s chlSab2.chr12 81224581 71 + 108555830 ---------GCCTatat-----tta---at---attaata-----tttaatttaatatt-----taatatatttaatatttaaGAGGGTATGGTACCCTCT--- i chlSab2.chr12 I 22 C 0 s calJac3.chr1 111459990 74 - 210400635 CTGGCTCATTCCtatat-----tta---at---attaata-----tttaattta--------------atatttCATGTTTAAGAGGGTGTGGTACCCTCTTAA i calJac3.chr1 C 0 C 0 e mm10.chr19 38094139 14 - 61431566 I e canFam3.chr1 87338275 0 + 122678785 I a score=20370.000000 s hg38.chr9_GL383541v1_alt 146961 9 + 171286 ATAGATACT s panTro4.chr9 68706394 9 + 137840987 ATAGATATT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64861597 9 + 135191526 ATAGATATT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57901489 9 - 122973662 ATAGATATT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79831271 8 + 112192347 -TATATATT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80910785 8 + 112612857 -TATATATT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76960209 8 + 107442819 -tatatatt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81224652 8 + 108555830 -TATATATT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111460064 9 - 210400635 ATAGATATT i calJac3.chr1 C 0 C 0 s mm10.chr19 38094153 9 - 61431566 ATAATTCCG i mm10.chr19 I 14 C 0 e canFam3.chr1 87338275 0 + 122678785 I a score=638665.000000 s hg38.chr9_GL383541v1_alt 146970 176 + 171286 AATATACATTTAAG----CTAAGA---TT--TTTTCTAGTCT-TAGAGATGTTCCACTTGCTTCGAAATACTGCCTACAATGAAATAAACACTGC--TTTT-AAGAAAGATCTATAAAT----AAGAGGTTAATCCCCTCAAGAATTTAGACTATGACTAATTCCCTTCTTGTTATGTTCTTAACTGGACCCA s panTro4.chr9 68706403 176 + 137840987 AATATACATTTAAG----CTAAGA---TT--TTTTCTAGTCG-TAGAGAGGTTCCACTTGCTTCGAAATACTGCCTACAATGAAATAAACACTGC--TTTT-AAGAAAGATCTATAAAT----AAGAGGTTAATCCCCTCAAGAATTTAGACTATGACTAATTCCCTTCTTGTTATGTTCTTAACTGGACCCA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64861606 184 + 135191526 AATATACATTTAAGCTGTCTAAGA---TT--TTTTCTAGTCT-TACAGATGTTCCACTTGCTTCGAAATACTGCCTACAATGAAATAAACACTGT--TTTT-AAGAAAGATCTATAAATAAACAAGAGGTTAATCCCCTCAAGAATTTAGACTATGACTAATTCCCTTCTTGTCAGGTTCTTAACTGGACCCA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57901498 175 - 122973662 AATATACATTTAAG----CTAAGA---TT--TTTTCCAGTCT-TAGAGATGTTCCACTTGCTTCGAAGTACTGCCTAC-ATGAAATAAACACTGT--TTTT-AGGAAAGATCTATAAAT----AAGAAGTTAATCCCCTCAAGAATTTAGACTATGACTAATTTCCTTCTTGTCACGTTCTTAACTGGACCCA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79831279 185 + 112192347 AATATACATTTAAGCTGTCTAAGA---TT--TTTTCCAGTCT-TAGAGATGTTCCACTTGCTTTGAAATACTGCCTAAAATGAAATAAACACTGT--TTTTAAAGAAAGATCTATAAATAAACAAGAGGTTAATCCCTTCAATAATTTAGACTATGACTGATTCCCTTCTTGTCACGTTCTTAACTGGACCCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80910793 185 + 112612857 AATATACATTTAAGCTGTCTAAGA---TT--TTTTCCAGTCT-TAGAGATGTTCCACTTGCTTTGAAATACTGCCTAAAATGAAATAAACACTGT--TTTTAAAGAAAGATCTATAAATAAACAAGAGGTTAATCCCTTCAATAATTTAGACTATGACTGATTCCCTTCTTGTCACGTTCTTAACTGGACCCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76960217 185 + 107442819 aatatacatttaagcTGTCTAAGA---TT--TTTTCCAGTCT-TAGAGATGTTCCACTTGCTTTGAAATACTgcctaaaatgaaataaacactgt--ttttaaagaaagatctATAAATAAACAAGAGGTTAATCCCTTCAATAATTTAGACTATGACTGATTCCCTTCTTGTCACGTTCTTAACTGGACCCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81224660 181 + 108555830 AATATATATTTAAGCTGTCT-------TT--TTTTCCAGTCT-TAGAGATGTTCCACTTGCTTTGAAATACTGCCTAAAATGAAATAAACACTGT--TTTTAAAGAAAGATCTATAAATAAACAAGAGGTTAATCCCTTCAATAATTTAGACTATGACTGATTCCCTTCTTGTCACGTTCTTAACTGGACCCA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111460073 178 - 210400635 AATACACATTTAAG----CT--GA---TT--TTTTCCAGTCT-TAGAGATGTTACACTTTCTTCAAAATACTGCCTAAAATGAAATAAACACTGT--TGTT-AAAACAGATCTATAAATAAATAAGAGGTTAATCCCATCAAGAATTTAAACTATAACTGATTCCCTTCATGTCATGTTCTTAACTGGACCCA i calJac3.chr1 C 0 C 0 s mm10.chr19 38094162 160 - 61431566 AATGTACAGTGGG-----CTAAGG---TTTATTTCCCACTTTCTAGAGATGAT-----------GAAATAGTACTGAAACTGATGTAAACATTGTGGCTTT-AAG-----TCTCTATAT----AAGAGATTAACTCCCTCATGAACTTAGATTATGACTGATCCTC----TGACATAGCCTCATCTCAACCCA i mm10.chr19 C 0 I 452 s canFam3.chr1 35340976 186 - 122678785 AATATATATTCAGGTTGCCTAGGAATTTT--TTTTCCAGTCTACGGAGGTATTCCACTAGCTTTGAAATACCGCCTAAAATGAAATAAACACTCT--TTTT--AAAAAGATCTACAAATAAGCAAGAAGTTAATCCC-TCAAGAATTTAGCCTATGACCAGTTCCCTTCTTGTCACATTCTTAACTGGACCTA i canFam3.chr1 I 483 C 0 a score=127273.000000 s hg38.chr9_GL383541v1_alt 147146 37 + 171286 GAGGGTAAGTCCTTAAGAACAGGACAAGATGTTTGAC s panTro4.chr9 68706579 37 + 137840987 GAGGGTAAGTCCTTAAGAACAGGACAAGATGTTTGAC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64861790 37 + 135191526 GAGGATAAGTCCTTAAGAACAGGACAAGATGTTTGAC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57901673 37 - 122973662 GAGGGTAAGTACTTAAGAGCAGGACAAGATGTTTGAC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79831464 37 + 112192347 GAGGGTAACTCCTTAAGAACAGGACAAGATGTTTGAC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80910978 37 + 112612857 GAGGGTAACTCCTTAAGAACAGGACAAGATGTTTGAC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76960402 37 + 107442819 GAGGGTAACTCCTTAAGAACAGGACAAGATGTTTGAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81224841 37 + 108555830 GAGGGTAACTCCTTAAGAACAGGACAAGATGTTTGAC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111460251 37 - 210400635 GAGGGTGAGGCCTTAAGAACAGGACAACATGTTTGAC i calJac3.chr1 C 0 C 0 s canFam3.chr1 35341162 37 - 122678785 GGGACAGGGTTCTGAAGAACAGACCAGGATGTTTGGC i canFam3.chr1 C 0 C 0 e mm10.chr19 38094322 452 - 61431566 I a score=731827.000000 s hg38.chr9_GL383541v1_alt 147183 203 + 171286 TTATTCTTTGTCCTG-CCTCAACCAGGCCCAC----------TCATCCGCTTGCCCAGTCACCAAC----TACCCTAAAATAACCTCTCCACCTCAAGGATCATACAAAATGTAAAATGGCAGCCCCAAAAT-----------AAGCGCTGACATGATCAGCATTACTAATAGCCAGGCAGA-AAATCCAGTGTGTTAGATCAAACAGGCTGATCTGGTTGTGCTTCTTT s panTro4.chr9 68706616 203 + 137840987 TTATTCTTTGTCCTG-CCTCAACCAGGCCCAC----------TCATCCGCTTGTCCAGTCACCAAC----TACCCTAAAATAACCTCTCCACCTCAAGGAGCATACAAAATGTAAAATGGCAGCCCCAAAAT-----------AAGCGCTGACATGATCAGCATTACTAATAGCCAGGCAGA-AAATCCAGTGTGTTAGATCAAACAGGCTGATCTGGTTGTGCTTCTTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64861827 203 + 135191526 TTATTCTTTGTCCTG-CCTCAACCAGGCCCAC----------TCATCCGCTTGTCCAGTCACCAAC----TACCCTAAAATAACCTCTCCACCTCAAGGAACATACAAAATGTAAAATGGCAGCCCCAAAAT-----------AAGCGCTGACATGATCAGCATTACTAATAGCCAGGCGGA-AAATCCAGTGTGTTAGATCAAACAGGCTGATCTGGTTGTGCTTCTTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57901710 203 - 122973662 TTATTCTTTGTCCTG-CCTCAACCAGGCCCAC----------TCATCCGCTTGTCCAGTCACCAAC----TACCCTAAAATAACCTCTCCACCTCAAGGAGCATACAAAATGTAAAATGGCAGCCCCAAAAT-----------AAGCACTGACATGATCAGCATTACTAATAGCCAGGCGGA-AAATCCAGTGTGTTAGATCAAACAGGCTGATCTGGTTGTGTTTCTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79831501 207 + 112192347 TTATTCTTTGTCCTG-CCTCAACCAGGCCCAC----------TCATCCGCTTGTCTAGTCACCAACTACTTACTCTAAAATAACCTCTCCACCTCAAGGAGCATACAAAATGTAAAACGGCGGCCCCAAACT-----------AAGAGCTGACATGAGCAGCATTACTAACAGCCAGGCAGA-AAATCCAGTGTGTTAGATCAAACAGGCTGACCTGGTTGTGTTTCTTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80911015 207 + 112612857 TTATTCTTTGTCCTG-CCTCAACCAGGCCCAC----------TCATCCGCTTGTCTAGTCACCAACTACTTACTCTAAAATAACCTCTCCACCTCAAGGAGCATACAAAATGTAAAACGGCGGCCCCAAACT-----------AAGAGCTGACATGAGCAGCATTACTAACAGCCAGGCAGA-AAATCCAGTGTGTTAGATCAAACAGGCTGACCTGGTTGTGTTTCTTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76960439 218 + 107442819 TTATTCTTTGTCCTG-CCTCAACCAGGCCCAC----------TCATCCGCTTGTCTAGTCACCAACTACTTACTCTAAAATAACCTCTCCACCTCAAGGAGCATACAAAATGTAAAACGGCGGCCCCAAACTTCATGTCAGTAAAGAGCTGACATGAGCAGCATTACTAACAGCCAGGCGGA-AAATCCAGTGTGTTAGATCAAACAGGCTGATCTGGTTGTGTTTCTTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81224878 218 + 108555830 TTATTCTTTGTCCTG-CCTCAACCAGGCCCAC----------TCATCCGCTTGTCTAGTCACCAACTACTTACTCTAAAATAACCTCTCCACCTCAAGGAGCATACAAAATGTAAAACGGCGGCCCCAAACTTCATGTCAGTAAAGAGCTGACATGAGCAGCATTACTAACAGCCAGGCGGA-AAATCCAGTGTGTTAGATCAAACAGGCTGACCTGGTTGTGTTTCTTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111460288 198 - 210400635 TTATTCTTTGTCCTG-TCTCAACCAGGCCCAC----------TCATCCACTTGCCCAGTCACCAAC----TACTC-----TAACCTCTCCACCTCAGGTAGCATACAAAATGTAAAATGGAGGCCCTAAAAT-----------AGGTGCTGACATGATCAGCATTATTAATCACCAGGCAGA-AAATCCAGTGTGTTAGAGCAAACGGGCTGATCTGGTTGTGTTTCTTT i calJac3.chr1 C 0 I 1193 s mm10.chr19 38094774 188 - 61431566 TTATCCTTTGTTTGATCCTAGACAAAGTCAACACAGGGTACATCAGCAACTCCTTCTGTCACCCAC----GACCTGAAAATCACTTCTCCATGCCAAATTGCCTTC-------------------------------------AGGAACCACAGTGTCTAGTGTTACCAATGCTTAGACAGAGAGAGTCAGC-TGCTAGACTGAACACGATGATCTCGGTATATTTCTTT i mm10.chr19 I 452 C 0 s canFam3.chr1 35341199 202 - 122678785 TTTCCCTTTTTCCTG-TCTCAACCCGGCCTGG----------TCATTAGCTGGCCCAGGCA-CAAC----TACCCTAAAGTAACCTTTCCACTTCAAGTAGCCCTCAAAATGTAAGATGGTGGCCCAAGAAT-----------AGGAGCTGACATTATCAGCATTATTAATAGCACAGTGGA-AAATCTTGTGTGTTCCACCAAACAAACTGATCTTGTCATGTTTCTTT i canFam3.chr1 C 0 C 0 a score=1691720.000000 s hg38.chr9_GL383541v1_alt 147386 479 + 171286 TGTGTGTTAAAATACTGACAGACAACTGCCAAGCAAATTTGGGGATTAAGGCCGTCATTTGAACC-TAGTCAGTAGCTGACTAACCTTAGGGA--TCTTTTATCAGACAGAACAACACATGGTCTGGCTAATGTTTTAAGTGTGGAAAAAGCGCTAAGGTAGA-ACAACCTAGACGTCTGCTATTGTCCAAAACATGCTTAACATTTCATTCAACCCACTGTGGCAATTCACGAAG------------TATTTGGAATATC-----------------CAAAAGGAGCCAGGGAAGTctatccaatagaactttctgtaatgaggaaatgctgcatacctgctgtgtccaattcagttaacca-tgagctgcatgtggcc-----actgagcatctttgaatgtggctcgtgtgactgaatacatgaatttttaatttaa---------------ttttaatagacacatgtacctagtggctatcataata---gacaAGATC-ATCTAGGAAATAATAATG----ACTGA----TTATTCCAC s panTro4.chr9 68706819 479 + 137840987 TTTGTGTTAAAATACTGACAGACAACTGCCAAGCAAATTTGGGGATTAAGGCCATCATTTGAACC-TAGTCAGTAGCTGACTAACCTTAGGGA--TCTTTTATCAGACAGAACAACACATGGTCTGGCTAATGTTTTAAGTGTGGAAAAAGCGCTAAGGTAGA-ACAACTTAGACGTCTGCTATTGTCCAAAACATGTTTAACATTTCATTCAACCCACTGTGGCAATTCACGAAG------------TATTTGGAATATC-----------------CAAAAGGAGCCAGGGAAGTctatccaatagaactttctgtaatgaggaaatgctgcatacctgctgtgtccaattcagttaacca-tgagctgcatgtggcc-----actgagcatcttcgaatgtggctcgtgtgactgaatacatgaatttttaatttaa---------------ttttaatagacacatgtacctagtggctatcataata---gacaAGATC-ATCTAGGAAATAATAATG----ACTGA----TTATTCCAC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64862030 479 + 135191526 TGTGTGTTAAAATACTGACAGACAACTGCCAAGCAAATTTGGGGCTTGAGGCCATCATTTGAACC-TAGTCAGTAGCTGACTAACCTTAGGGA--TCTTTTATCAGACAGAACAACACATGGTCTGGCTAATGTTTTAAGTGTGGAAAAAGCGCTAAGGTAGA-ACAACCTAGACGTCTGCTATTGTCCAAAACATGTTTAACATTTCATTCAACCCACTGTGGCAATTCACAAAG------------TATTTGGAATATC-----------------CAAAAGGAGCCAGGGAAGTctatccaatagaactttctgtaatgaggaaatgctgcatacctgctgtgtccaattcagttaacca-tgagctgcatgtggct-----actgagcattttcgaatgtggcttgtgtgactgaacacatgaatttttaatttaa---------------ttttaatagacacatgtacctagtggctatcataata---gacaAGATC-ATCTAGGAAATAATAATG----ACTGA----TTATTCCAC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57901913 477 - 122973662 TGTATGTTGGAATACTGACAGACAACTGCCAAGCAAATTTGGGGCTTGAGGCGGTCATTTGAACC-TAGTCAGTAGCTGACTAACCTTGGGGA--TCTTTTATCAGACAGAACAACACATGATCTGGCTAATGTTTTAAGTGTGGAAAAAGTGCTAAGGTAGA-ACAACCTAGACATCTGCTATTGTCCAAAACATGTTTAACATTTCATTCAACCCACTGTGGCAATTCATGAAG------------TATTTGGAATATC-----------------CAAAAGGAGCCAGGGAAGTctatccaatagaactttctgtaatgaggaaatgctgtatacctgctgtgtccaattcagttagcca-tgagcctcatgtggct-----attgagcattttcgaatgtggctcgtgtgactgaatacatgaatttttaatttaa---------------ttttaatagacac--gtacctagtggctatcataata---gacaAGATC-ATCTAGGAAATAATAATG----ACTGA----TTATTCCAC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79831708 483 + 112192347 TGTGTGTTGGAATACTGACAGACAACTGCCAACCAAATTTGGGGCTTGAGGCCATCGTTTGAACC-TAGTCAGTAGCTGA-----CTTGGGGA--TCTTTTATCAGACAGAACAACACATGGTCTGGCTAATGTTCTAAGTGTGGAAAAAGCGCTAAGGTAGG-ACAACCTAGACGCCTGCTATTGTCCAAAACACGTTTAACATTTCTTTCAACCCACTGTGGCAATTCACAAAG------------TATTTGGGATATC-----------------CAAAAGGAGCCAGGGAAGTctatccaataaaactttctgtaataaggaaatgctgcatgcctgctgtgtccaattcagttaacca-tgagctgcatgtggct-----attgagcattttcaattgtggtttgtgtgattgaatacatgaatttttaatttaa----------tttaattttaatagacacatgtacctagtggctatcataata---gacaAGATC-ATCTAGGAAATAATAATGACTAACTGA----TTATTCCAC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80911222 483 + 112612857 TGTGTGTTGGAATACTGACAGACAACTGCCAACCAAATTTGGGGCTTGAGGCCATCGTTTGAACC-TAGTCAGTAGCTGA-----CTTGGGGA--TCTTTTATCAGACAGAACAACACATGGTCTGGCTAATGTTCTAAGTGTGGAAAAAGCGCTAAGGTAGG-ACAACCTAGACGCCTGCTATTGTCCAAAACACGTTTAACATTTCTTTCAACCCACTGTGGCAATTCACAAAG------------TATTTGGGATATC-----------------CAAAAGGAGCCAGGGAAGTctatccaataaaactttctgtaataaggaaatgctgcatgcctgctgtgtccaattcagttaacca-tgagctgcatgtggct-----attgagcattttcaattgtggtttgtgtgattgaatacatgaatttttaatttaa----------tttaattttaatagacacatgtacctagtggctatcataata---gacaAGATC-ATCTAGGAAATAATAATGACTAACTGA----TTATTCCAC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76960657 477 + 107442819 TGTGTGTTGGAATACTGACAGACAACTGCCAACCAAATTTGGGGCTTGAGGCCATCGTTTGAACC-TAGTCAGTAGCTGA-----CTTGGGGA--TCTTTTATCAGACAGAACAACACATGGTCTGGCTAATGTTCTAAGTGTGGAAAAAGCGCTAAGGTAGG-ACAACCTAGACGCCTGCTATTGTCCAAAACATGTTTAACATTTCTTTCAACCCACTGTGGCAATTCACAAAG------------TATTTGGAATATC-----------------CAAAAGGAGCCAGGGAAGTCTATCCAACAAAACTTTCTGTAATAAGGAAATGCTGCATGCCTGCTGTGTCCAATTCAGTTAACCA-TGAGCtgcatgtggct-----attgagcatttTCAATTGTGGTTTGTGTGACTGAatacatgaatttttaatttaa----------------tttaatagacACATGTACCTAGTGGCTATCATAATA---GACTAAATC-ATCTAGGAAATAATAATGACTAACTGA----TTATTCCAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81225096 487 + 108555830 TGTGTGTTGGAATACTGACAGACAACTGCCAACCAAATTTGGGGCTTGAGGCCATCGTTTGAACC-TAGTCAGTAGCTGA-----CTTGGGGA--TCTTTTATCAGACAGAACAACACATAGTCTGGCTAATGTTCTAAGTGTGGAAAAAGCGCTAAGGTAGG-ACAACCTAGATGCCTGCTATTGTCCAAAACATGTTTAACATTTCTTTCAACGCACTGTGGCAATTCACAAAG------------TATTTGGAATATC-----------------CAAAAGGAGCCAGGGAAGTctatccaacaaaactttctgtaataaggaaatgctgcatgcctgctgcgtccaattcagttaacca-tgagctgcatgtggct-----attgagcattttcaattgtggtttgtgtgactgaatacatgaatttttaatttaa----------tttaattttaatagacacatgtacctagtggctatcataata---gataAGATC-ATCTAGGAAATGATAATGACTAACTGATTATTTATTCCAC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111461679 489 - 210400635 tatgtgtTGGAATGCTAACAGATAACTGCCAGGCAAATCC-GAGCTTGAGGCCATTA-CTGAACC-TAGTCAGTAGCTGACTAACCTTGGGAA--TCTTTTAT----CCAAACAACACATGGTCTGACTAGTGTTCTAAGTATGGAAAAACTACTGAGGTAGA-CCAACCTAGATGCTTGCTATTGTCCAAAACATCTTTAACATTTCATTCAACCCACTGTGGCAGTTCACAAAG------------TGTTTGGAACATC-----------------CAGAAGGAACCAGGGAAGTctatccaatagaactttctaaaatgaggaaatgctgcatat---ctgtgtccagttcagttaacca-tgagctgcatgtggct-----attgggcatcttcaaatgtggcttgtgtaactgaatacatgaatttttaatttaatttaatttaatttaattgtaatAGACTCGTATACTTAGTGGCTATCAAAATA---GACAAGACC-ATCTAGGAAATAATAATGATTAACTGA----TTATTCCAC i calJac3.chr1 I 1193 C 0 s mm10.chr19 38094962 477 - 61431566 TATTTCCCGGAACACTGACAGAGAAGTGCCGAACAAGTCTATGGTTTAGGGTCTTAGCTTGAATC-TAGTGAGTCGATGA-TGGATTGGGAGAAGTCTTTGGTCAGACAG---GACACGTGGGCTGACTAGTAT------TACTGGGAAACTTTGAAGTAAAG-ACAGCCTGG--------TATTGTGCAAAATTCCTTTAGCATTTTTCTCAACATACT-TGGCAG---AAAAGGAGCCATGTATGTTATTTGGTATGGCaaaaaaaaaaaaaaaaaaaaaaaaaGCCA-AGATGTCCATTCAGTGTTaccttttgcaatgaggagatgc---atagctgttgggt-caagtcagttaggcacttggctgcatgtggctacagcattgactactttgacaagtcgctaatgagactgaata-----------actTTAA---------------TTTGAACAGACTT-TGTGCCTATGGGCTGCCATAATCAATGACACGAGT-GTAGAGTAAATATTA-------ACTCA----TCTTTCTAC i mm10.chr19 C 0 I 105 s canFam3.chr1 35341401 475 - 122678785 TGTGTGTTGGAATGCTGATAGGCAAGTGCCAAACAGATTTGAGGTTTGAGGCCGTAGTTTGAATCTTAGTTCATAGCTAACTGAC--TGTGGA--TCTTTTATAAGACAGAACAACATGTGGTCTGGCTAGTATTCTCAGTGCAGAAAGAGTTCTAAGATAGGAACAACCTAGTGGCCTAGTCTTGTCCAGAACAGCTTTAGCATTTCACCTAACCCACTGTGGCCCTTCACAAAT------------CGTTTAGAATTCT-----------------TAAAAGGAGCCAGGAAGTTctatgcattggaa-tttctgcaatgaggaaatgctatatatctgctgtgtccaattcacttgacca-ctaactatatgtaact-----actgggca-cttgaaatgtggcccgtgtgcctgaagaaatgaattttttattttt---------actt--cttaaatagccacatgt-cctcgtggctactataata---aacaatgcCAATCTAGGAAACACTA----------GC----TCATTCCAC i canFam3.chr1 C 0 C 0 a score=136968.000000 s hg38.chr9_GL383541v1_alt 147865 34 + 171286 ATCTTAATTGTAAATATCCTGATTCCTTTTTC-TT s panTro4.chr9 68707298 34 + 137840987 ATCTTAATTGTAAATATCCTGATTCCTTTTTC-TT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64862509 34 + 135191526 ATCTTAATTGTAAATATCCTGATTCCTTTTTC-TA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57902390 35 - 122973662 ATCTTAATTGTAAATATCCTGATTCCTTTTTCTTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79832191 35 + 112192347 ATCTTAATTGTAAATATCCTGATTCCTTTTTCTTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80911705 35 + 112612857 ATCTTAATTGTAAATATCCTGATTCCTTTTTCTTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76961134 35 + 107442819 ATCTTAATTGTAAATATcctgattcctttttcttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81225583 35 + 108555830 ATCTTAATTGTAAATATCCTGATTCCTTTTTCTTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111462168 35 - 210400635 ATCTTAATTGTAAATATCGTGATTCCTTTTTCTTC i calJac3.chr1 C 0 C 0 s mm10.chr19 38095544 34 - 61431566 ATTTTAGATAGAGATATCCTGATTCCTTTTTTTT- i mm10.chr19 I 105 I 18 s canFam3.chr1 35341876 34 - 122678785 ATCTTAATTATAGATGTCCTGATTCTTTTTTCTT- i canFam3.chr1 C 0 C 0 a score=53427.000000 s hg38.chr9_GL383541v1_alt 147899 19 + 171286 ------GTGTCAAatataaatataa s panTro4.chr9 68707332 19 + 137840987 ------GTGTCAAATATAAATATAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64862543 19 + 135191526 ------GTGTCAAATATAAATATAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57902425 19 - 122973662 ------GTGTCAAatataaatatga i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79832226 19 + 112192347 ------GTGTCAAATATAAATATAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80911740 19 + 112612857 ------GTGTCAAatataaatatag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76961169 19 + 107442819 ------gtgtcaaatataaatatag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81225618 19 + 108555830 ------GTGTCAAatataaatatag i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111462203 15 - 210400635 ------TTATCCA----AAATATAG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35341910 25 - 122678785 TTTTTTTTCTCAGTTGTAAATATAA i canFam3.chr1 C 0 I 19 e mm10.chr19 38095578 18 - 61431566 I a score=908069.000000 s hg38.chr9_GL383541v1_alt 147918 414 + 171286 aggctgggtgaggtggctcatgcctgtaatcctaacactttgggagg-ccaa-gcgggtggatatcacctgaggtcaggtgttcgagaccagcctggccaacatggcgaaactgcatctctgctaaaaatacaaaaattagccaggcgtggtggcacatgcctgtaatcccagttactcgggaggctgaggcaggagaattgcttgaatccaggaggtggagaatgcagtgagctgagattgcatcattgcactctagcctgggcgacaagagcaaaactcccatctcaaaaaaaaaacaaaa---cagaaaTATATATATacacacacacacacacacacacacac--------acacacacacacacacacatatatatacatacacatatatatacacacatatatatacacacacacacatat s panTro4.chr9 68707351 393 + 137840987 AGCctgggtgcggtggctcatgcctgtaatcctaacactttgggagg-ccaa-gcgggtggatatcacctgaggtcaggtgttcgagaccagcctggccaacatggcgaaaccgcatctctgctaaaaatacaaaaattagccaggcgtggtggcacatgcctgtaatcccagttactcgggaggctgaggcaggagaattgcttgaatccaggaggtggaggatgcagtgagctgagatcgcatcattgcactctagcctgggtgacaagagcaaaactcccatctcaaaaaaaaaaaaaaaaaacagaaaTATATATATATATATacacacacacacacacacac--------acacacacacacaca--------tatacatacacatatata----------------cacacacacacaTAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64862562 355 + 135191526 Aggctgggtgtggtggctcacgcctgtaatcctaacactttgggagg-ccaa-gcgggtggatatcacctgaggtcaggtgttcgagaccagcctggccaacatggcgaaaccacatctctactaaaaatacaaaaattagccaggcgtggcggcacatgcctgtaatcccagttactcgggaggctgaggcaggagaattgcttgaatccaggaggtggaggatgcagtgagctgagatcgcatcactgcactctagcctgggcgacaagagcaaaactccCATCTc-aaaacaaaacaaaa---caaaaAAATATATATATAtacacacaca--------------------------------------------tatatatataca----------------------cacacacacacatat i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57902444 372 - 122973662 agtctgggtgcggtggctcacacctgtaatcctaacactttgggaggcccag-gtgggtggatatcacctgaggtcaggtgttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggtgtggtggcaaatgcctgtaatcccagttactcaggaggctgaggcaggagaattgcttgaatctaggaggtggaggatgcagtgagctgagatcgcatcattgcactctagcctgggcgacaagagcaaaact-ctgtctcaaacaaacaaacaaa---caaaaatatatatatatatatacagacacataca--------------------------------------tatatacacacatatatagata------------tacacacacacatat i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79832245 367 + 112192347 Aggctgggtgcggtggctcacgactataatcccaacactttgggggg-ctga-gtgggcgg--atcacctgaggtcaggtgtttgagaccagcctggccaacatggcaaaactccatctctactaaaaatacaaaaattagccgggtgtggtggcacatgcctgtaatcccagttactcgggaggctgaggcaggagaattgcttgaatccaggaggtggaggatgcagtgagctgagatcggatcactgcactgcagcctgggcaacaagagcaaaactccattcccct----------------caaaaaaaTacacacacacacacacacacacacacacac----------gtatatatatacac----------------acacatatatata--------------cacacacacaTATAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80911759 375 + 112612857 aggctgggtgaggtggctcatgactataatcccaacactttgggggg-ctga-gtgggcgg--atcacctgaggtcaggtgtttgagaccagcctggccaacatggcaaaactccatctctactaaaaatacaaaaattagccgggtgtggtggcacatgcctgtaatcccagttactcgggaggctgaggcaggagaattgcttgaatccaggaggtggatgatgcagtgagctgagatcggatcactgcactgcagcctgggcaacaagagcaaaactccattcctct----------------caaaaaaaTacacacacacacacacacacacacacgtat----------atatatacacacaca--------tatatatacacgtatatata--------------cacacacacatatat i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76961188 383 + 107442819 aggctgggtgtggtggctcacgactataatcccaacactttgggagg-ctga-gtgggcgg--atcacctgaggtcaggtgtttgagaccagcctggccaacatggcaaaactccatctctactaaaaatacaaaaattagccgggtgtggtggcacatgcctgtaatcccagttactcgggaggctgaggcaggagaattgcttgaatccaggaggtggaggatgcggtgagctgagatcgcatcactgcactccagcctgggcaacaagagcaaaactccattcccct----------------caaaaaaatacacacacacacacacacacacacacacacacacg--tatatatatacacacaca--------tatatatacacatatatata--------------cacacacacatatat i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81225637 385 + 108555830 aggctgggtgcggtggctcacgactataatcccaacactttggaagg-ctga-gcgggcgg--atcacctgaggtcaggtgtttgagaccagcctggccaacatggcaaaactccatctctactaaaaatacaaaaattagaagggtgtgatggcacatgcctgtaatcccagttactcgggaggctgaggcaggagaactgcttgaatccaggaggtggaggatgcagtgagctgagataggatcactgcactccagcctgggcaacaagagcaaaactccattcccct----------------caaaaaTacacacacacacacacacacacacacacacacacacgtatatatatacacacacaca--------tatatatacacgtgtatata--------------cacacacacacatat i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111462218 335 - 210400635 AGTCCAAGC-CCTCAgctaatgcctgtaatcccagcactttgggagg-ccaaggcaggtgg--atcacctgagttcaggtatttgagaccagcctggtcaacatggcaaaaccccatctttactgaaaatacaaaaattagcctggtgtggtggcacacacctgtaatcccagctactcaggaggatgagacaggagaattgcttgaacccaggaggcagaggttgcagtgagcccagattgtaccattgtactccagcctgggtgacaagaacaaatctccatct--------------------caaaaTAatataaatata------------------------------------------------------tatatatatacatatacata--------------tatacacacacgtat i calJac3.chr1 C 0 C 0 e mm10.chr19 38095578 18 - 61431566 I e canFam3.chr1 35341935 19 - 122678785 I a score=18549.000000 s hg38.chr9_GL383541v1_alt 148332 5 + 171286 aaata s panTro4.chr9 68707744 5 + 137840987 AAATA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64862917 5 + 135191526 aaata i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57902816 5 - 122973662 aaata i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79832612 5 + 112192347 AAATA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80912134 5 + 112612857 aaata i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76961571 5 + 107442819 aaata i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81226022 5 + 108555830 aaata i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111462553 5 - 210400635 aaata i calJac3.chr1 C 0 C 0 s mm10.chr19 38095596 5 - 61431566 AATTA i mm10.chr19 I 18 C 0 e canFam3.chr1 35341935 19 - 122678785 I a score=2608714.000000 s hg38.chr9_GL383541v1_alt 148337 711 + 171286 taGAAAGAAGGGGGAAATTCTGTTTAATGCC--CATAATTTTATGAGTCTAACATAATTGTTGTAAATTTGGTAAACTTTCCAGTC-TTTTTCTAT-TAT--TTTTAGATGAACTAGATATTATTTTGTCTTATTTTA-----TTTAG-----------------------TTTTTTCACTTAACATTATGAGAGGAATATATTTCTGTACTACGAAATAATATGCCCAAGTTATCAAATCTGACAATGGCCAGTTTCTTAGATAATTGTGCCGTAGTTCATTTATTTCTTCTATTTTT--AAAATTCTGGGt------gt--------ttgcttg-cttacttgct--------------tgTATGGTTTTATGGTCACTATAAAACAATGCTATAGTAAACATATGAAAGCATGTTAATATTTCTCTTCTTTGGAATTTATTACCATGCCAAATGTTTGAGTTTTATGTAGGTAATGATTTAGATGGTGAACCATTTCACTACCACATATTCATTTT-GAAAAGGTAC-TTTTTTAGTATACTTGTGAAAAATAGACTTTAAAGCTACCCCC-C-ACACCCCAT--AAAATAAAGCCAAGACTCT---TCTGTCTGCACCACAATTAATTCAGTAAATTATGAGATGGATTAAT--ATTCCTTCCCATATAACAAAAAAAGTTACTGCTAA----AATATAACCGCATTCAGGGCTGATGACACAGACCTTTGCTTTACAAACAGGGAATAAGTTCCCAGTAGTAAACTCTGCAAGTAAAATATTTTAC s panTro4.chr9 68707749 711 + 137840987 TAGAAAGAAGGGGGAAATTCTGTTTAATGCC--CATAATTTTATGAGTCTAACATAATTGTTGTAAATTTGGTAAATTTTCCAGTC-TTTTTCTAT-TAT--TTTTAGATGAACTAGATATTATTTTGTCTTATTTTA-----TTTAG-----------------------TTTTTTCACTTAACATTATGAGAGGAATATATTTCTGTACTACGAAATAATATGCCCAAGTTATCAAATCTGACAATGGCCAGTTTCTTAGATAATTGTGCCGTAGTTCATTTATTTCCTCTATTTTT--AAAATTCTGGGT------GT--------TTGCTTG-CTTACTTGCT--------------TGTATGGTTTTATGGTCACTATAAAACAATGCTATAGTAAACATATGAAAGCATGTTAATATTTCTCTTCATTGGAATTTATTACCATGCCAAATGTTTGAGTTTTATGTAGGTAATGATTTAGATGGTGAACCATTTCACTACCACATATTCATTTT-GAAAAGGTAC-TTTTTTAGTATACTTGTGAAAAATAGACTTTAAAGCTACCCCC-C-ACACCCCAT--AAAATAAAGCCAAGACTCT---TCTGTCTGCACCACAATTAATTCAGTAAATTATGAGATGGATTAAT--ATTCCTTCCCATATAACAAAAAAAGTTACTGCTAA----AATATAACCGCATTCAGGGCTGATGACACAGACCTTTGCTTTACAAACAGGGAATAAGTTCCCAGTAGTAAACTCTGTAAGTAAAATATTTTAC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64862922 710 + 135191526 tagaaagaaaggggaaattCTGTTTAATGCC--CATAATTTTATGAGTCTAACATAATTGTTGTAAATTTGGTAAATTTTCCAGGC-TTTTTCTAT-TAT--TTTTAGATGGACTAGATATTATTTTGTCTTATTTTA-----TTTAG-----------------------TTTTTTCACTTAACATTATGAGAGGAATATATTTCTGTACTATGAAATAATATGCCCAAGTTATCAAATCTGACAATGGCCAGTTTCTTAGATAATTGTGCCATAGTTCATTTATTTCCTCTATTTTT---AAATTCTGGGT------GT--------TTGCTTG-CTTGCTTGCT--------------TGTATGGTTTTATGGTCACTATAAAACAATGCTATAGTAAACATACGAAAGCATGTTAATATTTCTCTTCTTTAGAATTTATTACCATGCCAAATGTTTGAGTTTTAGGTAGGTAATGTTTTAGATGGTGAACCATTTCACTACCACATATTCATTTT-GAAAAGGTAC-TTTTTTACTATACTTGTGAAAAATAGACTTTAAAGCTACCCCC-C-TCACCCCAT--AAAATAAAGCCAAGACTTT---TCTGTCTGCACCACAATTAATTCAGTAAATTATGAGATGGATTAAT--ATTCCTTCCCATATAACAAAAAAAGTTACTGCTAA----AATATAACCGCATTCAGGGCTGATGACACAGACCTTTGCTTTACAAACAGGGAATAAGTTCCCAGTAGTAAACTCTGTAAGTAAAATATTTTAC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57902821 713 - 122973662 taG-AAGAAGGGGGAAATTCTGTTTAATGCC--TATAATTTTATGAGTCTAACATAATTGTTGTAAGTTTGGTAAATTTTCCAGGC-TTTTTCTAT-TAT--TTTTAGATGAACTAGatattattttgtcttatttta-----tttag-----------------------ttttTTCACTTAACATTATGAGAGGAATATATTTCTGTACTACAAAATAATACGCCCAAGTTATCAGATCTGACAATGGCCAGTTTCTTAAATAATTGTGCCATAGTTATTTTATTTCCTCTATTTTT--AAAATTTTGGGt------gtttgc----ttgcttg-cttgcttgct--------------tgTATGGTTTTATGGTCACTATAAAATAATGCTATAGTAAACACATGAAAGCATGTTAATATTTCTCTTCTTTAGAATTTATTACCATGCCAAACGTTTGAGTTTTGTGTAGGTAATGATTTAGATGGTGAACCATTTCACTACCACATATTCATTTT-GAAAAGGTAC-TTTTTTACTATATCTGTGAAAAATAGACTTTAAAGCTGCCCCCAC-ACACCCCTT--AAAATAAAGCCAAGACTTT---TCTGTCTGCGCCACAATTAATTCAGTGAATTATGAGATGGATTAAT--ATTCCTTCCCATATAACAATAAAAGTTACTGCTAA----AATATAACCGCATTCAGGGCTGATGACACAGACCTTTGCTTTACAAAC--GGAATAAGTTCCCAGTTGTAAACTCTGCAAGTAAAATATTTTAC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79832617 710 + 112192347 TAGAAAGAAGGGGGAAATTCTGTTTAATGCC--TATAATTTTATGAGTCTAACATAATTGTTGTAAATTTGGTAAAATTTCCAGGC-TTTTTCTATGTAT--TTTTAGATGAACTAGATATTCGTTTGTC-----TTA-----TTCAG-----------------------TTTTTTCACTTAACATTATGAGAGGAATATATTTCTGTACTACGAAATAATATGCCCAAGTTATCAGATCTGACAGTGGCCAGTTTCTTAGATAATTGTGCCATAGTTCATTTATTTCCTCTATTTTA--AAAATTTTGGGT------GT--------TTTCTTG-CTTGCTTGCT--------------TGTATGGTTTTATGGTCACTATAAAATAATGCTATAGTAAACATACAAAAGCATGTTAATATTTCTCTTCTTTAGAATCTGTTACCATGCCAAATGTTTGAGTTTTATGCAGGTAATGATTTAGATGGTGAACCATTTCATTACCACATACTCATTTT-GAAAAGGTAC-ATTTTTACTATACTTGTGAAAAATAGACTTTAAAGCCACCCCC-CGACACCCCATTAAAAAAAAAGCCAAGACTTT---TCTCTCTGCACCACAATTAATTCAGTAAATTATGAGATGGATTAAT--ATTCCTTCCCATATAACAATAAAAGTTGCTGCTAA----AATATAACTGCATTCAGGGCTGATGACACAGACCTTTGCTTTACAAACAGGGAATAGGTTCCCAGTAGTAAACTCTGCAAGTAAAATATTTCAC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80912139 710 + 112612857 taGAAAGAAGGGGGAAATTCTGTTTAATGCC--TATAATTTTATGAGTCTAACATAATTGTTGTAAATTTGGTAAAATTTCCAGGC-TTTTTCTATGTAT--TTTTAGATGAACTAGATATTCGTTTGTC-----TTA-----TTCAG-----------------------TTTTTTCACTTAACATTATGAGAGGAATATATTTCTGTACTACGAAATAATATGCCCAAGTTATCAGATCTGACAGTGGCCAGTTTCTTAGATAATTGTGCCATAGTTCATTTATTTCCTCTATTTTA--AAAATTTTGGGt------gt--------tttcttg-cttgcttgct--------------tgTATGGTTTTATGGTCACTATAAAATAATGCTATAGTAAACATACAAAAGCATGTTAATATTTCTCTTCTTTAGAATCTGTTACCATGCCAAATGTTTGAGTTTTATGCAGGTAATGATTTAGATGGTGAACCATTTCATTACCACATACTCATTTT-GAAAAGGTAC-ATTTTTACTATACTTGTGAAAAATAGACTTTAAAGCCACCCCC-CGACACCCCATTAAAAAAAAAGCCAAGACTTT---TCTCTCTGCACCACAATTAATTCAGTAAATTATGAGATGGATTAAT--ATTCCTTCCCATATAACAATAAAAGTTGCTGCTAA----AATATAACTGCATTCAGGGCTGATGACACAGACCTTTGCTTTACAAACAGGGAATAGGTTCCCAGTAGTAAACTCTGCAAGTAAAATATTTCAC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76961576 710 + 107442819 tagaaagaagggGGAAATTCTGTTTAATGCC--TATAATTTTATGAGTCTAACATAATTGTTGTAAATTTGGTAAAATTTCCAGgc-tttttctatgtat--ttttagatGAACTAGATATTCGTTTGTC-----TTA-----TTcag-----------------------ttttttcacttaacattatgagAGGAATATATTTCTGTACTACGAAATAATATGCCCAAGTTATCAGATCTGACAGTGGCCAGTTTCTTAGATAATTGTGCCatagttcatttatttcctctatttta--aaaattttgggt------gt--------ttgcttg-cttgcttgct--------------tgtatGGTTTTATGGTCACTATAAAATAATGCTATAGTAAACATACAAAAGCATGttaatatttctcttctttagaaTCTGTTACCATGCCAAATGTTTGAGTTTTATGCAGGTAATGATTTAGATGGTGAACCATTTCATTACCACATACTCATTTT-GAAAAGGTAC-ATTTTTACTATACTTgtgaaaaatagactttaaagccACCCCC-CGacaccccattaaaaaaaaagctaagacTTT---TCTCTCTGCACCACAATTAATTCAGTAAATTATGAGATGGATTAAT--ATTCCTTCCCATATAACAATAAAAGTTGCTGCTAA----AATATAACTGCATTCAGGGCTGATGACACAGACCTTTGCTTTACAAACAGGGAATAGGTTCCCAGTAGTAAACTCTGcaagtaaaatatttcac i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81226027 706 + 108555830 taGAAAGAAGGGGGAAATTCTGTTTAATGCC--TATAATTTTATGAGTCTAACATAATTGTTGTAAATTTGGTAAAATTTCCAGGC-TTTTTCTATGTAT--TTTTAGATGAACTAGATATTCGTTTGTC-----TTA-----TTTAGT----------------------TTTTTTCACTTAACATTATGAGAGGAATATATTTCTGTACTACAAAATAATATGCCCAAGTTATCAGATCTGACAGTGGCCAGTTTCTTAGATAATTGTGCCATAGTTCATTTATTTCCTCTATTTTA--AAAATTTTGGGt------gt--------ttgcttg-cttgcttgct--------------tgTATGGTTTTATGATCACTATAAAATAATGCTGTAGTAAACATACAAAAGCATGTTAATATTTCTCTTCTTTAGAATCTGTTACCATGCCAAATGTTTGAGTTTTAAGCAGGTAATGATTTAGATGGTGAACCATTTCATTACCACATACTCATTTT-GAAAAGGTAC-ATTTTTACTATACTTGTGAAAAATAGACTTTAAAGCCACCCCC-TGACACCCCATT-AAATAAAAGCCAAGACTTT---TCTCTCTGCACCACAATTAATTCAGTAAATTATGAGATGGATTATT--ATTCCTTCCCATATAAC----AAAGTTGCTGCTAA----AATATAACCGCATTCAGGGCTGGTAACACAGAACTTTGCTTTACAAACAGGGAATAGGTTCCCAGTAGTAAACTCTGCAAGTAAAATATTTCAC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111462558 701 - 210400635 taGAAAGTAGGGGGAAATTCTGTTTAATGCC--TATAATTTTATGAGTCTAACATAGTTGTTTTAA-TCTGGTAAATTTTCCAGGC-TTTTTCTATGTAT--TTTTAGATGAACTAGGTATCATTTTGTCTTATTTTATTTACTTTAG-----------------------TTTTTTCACTTACCGTTATAAGAGAAATATATTTCCATACTTCTAAGTAATATGACCAAGTTATCAGATCTGACAATGGCCAATTTCTTAGGTAATTGTGCCATGGTTCATTTATTCCCTCTATTTTT--GGAATTTTGAGT------GT-----------------TTGCTTGCT--------------TGTATGATTTTATGGTCACTATAAAATAATGGTATAGTAAACATAAGAAAGCATGTTAATATTTCCCCTCTTTAGAATCCATTACCATTCCAAATGTTTGAGTTTTATGCAGGTAATGACTTAGATGGTGAACCATTTTACTACCACGTATTCATTTT-GAAAAAGTACTTTTTTTATTATACTTGTGAAAAATATGCTTTAAAGCCACCCCT-C-----CCC----AAAATAAAGCCAAGACTTT---TCTGTCTACAGCACAATTAATTCAATAAATTATGAGATGGATTAAT--ATTCCTTCCCATCTAACAGTAAATATTGCTGCTAA----AATATAACTGCATTGAGGGCTGATGACACAGACCTTTGCTTTACAAAC--GGAATAAGTTCCCAGTGGTAAACTCTGTAAGTAAAATATTTTAC i calJac3.chr1 C 0 C 0 s mm10.chr19 38095601 704 - 61431566 TAAAACATAGGAGGAAACTCTG--AACTAGC--CATAATTTTATGAGCCTAACAAAATAATTATATAGCTGGTAAATTTTCTAGGT-TTTTTTTTTCTATTATTTTAGATGACTTGGGGATTGTTTTCCC---TTTTA-----ATCAGC----------------------TTTTTAAACTTAGCATTGT-----ATATCTGTATCTGAAGCGCTGAGTAATGTTCTCAA-CACTCAGGTTTAATGGCCGCCTATTTCTCAGACTGTTGTATTCTAGTTTATTTCTTTCT----CTTTG--AAAACTCCGGCT------ATCTCTTCTGTTGCATGCCTCGCGTGCT--------------TCTTTGGTTTAATG-TCATTATGAAATAGTGCTATAGTAAACATATAAAAGCATGCTAATATTTCTCAACTTTAGAATGCATTGCCATGCAAAATGTTTGAGTTTTCTACAGGGAGAGATTGAGAAGGTGGGCCCTTTTACTACTTCAAATTCGTTGT-GCAAAAGTAC-TCCCCCAGTGTACTTGTGAAAAACGGACATTAAAGCTGACAAA-A------------GGAAAGAAACCATGTTTTTCTCCCTCTGTGTAGCACAATTAATTTGATAAATCATGAGACATTTCAATGCATTCCTTCTCATATAACAATAAAGA----TGCTAAAAAGAATGTGATACTAGCCAGGACTGATGACAGAGATCTTTGCTTTCCAGATGCAGAATAAGTTCCAAGGCATGAACCTAGAAAGCAAAATATTTTAC i mm10.chr19 C 0 C 0 s canFam3.chr1 35341954 746 - 122678785 TGGAAAATAGAAGGAAATTCTGTTTAACCCTCATATAATTTCATGGGCCTAACATAATTGTTCCAAATTTGATAAATTTTCAAGGCTTTTTTCTATGTAC--TTTTAGATGAGTTCAGTAT-AATTTATCTTATTTTG-----TTTAACTTTATCTTTTATAACCAGCTTTTTTTTTCATTTAACATTATGAGAGAAATAGACTTTCATACTACTGAATAATATTCACAAGCAATCAGAGTTAATGTTTTCCTATTTCTTAACTTGTGGTACCATAGTTTATTCACTTCCTGTATTTTTGTGAAATTTTGGATTGTTTCAT--------TTGTTGG-CTTGCTGGCTTATTTTATTGCTTGTGTTTGGTTTTATGGTCATCATAAAATAATGCTATAGTAAACACATGAGAGCACATTACTATTTCCCCTTCTTAGAATCCATTTACATGCCAAATGATTGAGTCCTATTTAGGTAATGGTTTACATGGTGAATC-------CACCCCAGATTCATTTTGGAAAAAGTAC-ATTTTCACTATTTAGGTGAAAAATAGACTTGAAAATTACCAAA-AG-----------GAAGGAAAGCCAGGACTTT--TTCTCTCTGCAGCATGATTTATTCAATAAATTAGGAGACAGATTTAC--AATCCTTCCCCCATAACAATAAACATTGCTGATAA----AATACAACTGCATTCAATGCTGATGACATAGAGCTTTGGTTTGCAAATGGGGAATAAGTTCCTAGGCAAAAATCCTGCAAGTAGAACACCCTGC i canFam3.chr1 I 19 I 412 a score=22707.000000 s hg38.chr9_GL383541v1_alt 149048 7 + 171286 A---TGTTCA s panTro4.chr9 68708460 7 + 137840987 A---TGTTCA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64863632 7 + 135191526 A---TGTTCA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57903534 7 - 122973662 A---TGTTCA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79833327 7 + 112192347 A---TGTTCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80912849 7 + 112612857 A---TGTTCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76962286 7 + 107442819 a---tgTTCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81226733 7 + 108555830 A---TGTTCA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111463259 7 - 210400635 A---TGTTCA i calJac3.chr1 C 0 C 0 s mm10.chr19 38096305 10 - 61431566 ATATTATTTA i mm10.chr19 C 0 C 0 e canFam3.chr1 35342700 412 - 122678785 I a score=350222.000000 s hg38.chr9_GL383541v1_alt 149055 109 + 171286 GATCATCTCTAGAATCTATAAACATGAGAAAATTAACAGAAGT----AAACGAGAA--AAAA--------------AAATCCACCCTGTTTTGTTTTGTTCTTTATATATATACA----GAGTTATACATTGT s panTro4.chr9 68708467 109 + 137840987 GATCATCTCTAGAATCTATAAACATGAGAAAATTAACAGAAGT----AAACGAGAA--AAAA--------------AAATCCACCCTGTTTTGTTTTGTTCTTTATATATATACA----TAGTTATACATTGT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64863639 104 + 135191526 GATCATCTCTAGAATCTATAAACATGAGAAAATTAACAGAAGT----AAACGAGAA--AAAA--------------A---CCACC--GTTTTGTTTTGTTCTTTGTATATATACA----TAGTTATACATTGT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57903541 108 - 122973662 GATCATCTCTATAATCTATAAACATGAGAAAATTAACAGAAGT----AAACGAGAA--AAAA--------------A-ATCTACCCTGTTTTGTTTTGTTCTTTGCATGTATACA----TAGTTATACATTGT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79833334 107 + 112192347 GATCATCTCTAGACTCTATAAACATGAGAAAATTAACAGAATT----AAATGAGAA--AAAA--------------A-TTTCACC-TGTTTTGTTTTGTTCTTTGTATATATACA----TAGTTATACATTGT i rheMac3.chr15 C 0 I 110 s macFas5.chr15 80912856 107 + 112612857 GATCATCTCTAGACTCTATAAACATGAGAAAATTAACAGAATT----AAATGAGAA--AAAA--------------A-TTTCACC-TGTTTTGTTTTGTTCTTTGTATATATACA----TAGTTATACATTGT i macFas5.chr15 C 0 I 23 s papAnu2.chr15 76962293 107 + 107442819 GATCATCTCTAGAATCTATAAACATGAGAAAATTAACAgaagt----aaatgagaa--aaaa--------------a-tttcacc-tgttttgttttgttctttgtatatataca----tagttaTACATTGT i papAnu2.chr15 C 0 I 23 s chlSab2.chr12 81226740 107 + 108555830 GATCATCTCTAGAATCTATAAACATGAGAAAATTAACAGAAGT----AAATGAGAA--AAAA--------------A-TTTCACC-TGTTTTGTTTTGTTCTTTGTATACATACA----TAGTTATACATTGT i chlSab2.chr12 C 0 I 23 s calJac3.chr1 111463266 122 - 210400635 GAGCATCTCTAGAATCTAGAAACATGAGACAATGAACAGAAGT----AAACCAGAA--AAAATAAACACAAAAAACA-ATCCACCCTGTTTTGTTTTATTCTTTGTATATATCTA----CAGTTATACATTGT i calJac3.chr1 C 0 C 0 s mm10.chr19 38096315 109 - 61431566 TATAACCTCTATAATCTCTAAAGATGA-AAGATTAACAGAAGCTTTAAAAAAAGAACCATAA--------------A-AGCTACCCTATTT--GTTTGTCCTGTGTAGTTCCACA----GAGATAAACATT-- i mm10.chr19 C 0 C 0 s canFam3.chr1 35343112 104 - 122678785 GATAATCTCTATAATCTCTAAAAATTAGAAAATTAACAGAGAT----AAA----AC--AAAA--------------A-TACCCCC----TTTACCTTGTCCCTTGTAAATATATATGTGTAGTTATATATTGT i canFam3.chr1 I 412 C 0 a score=6600.000000 s hg38.chr9_GL383541v1_alt 149164 3 + 171286 GAC s panTro4.chr9 68708576 3 + 137840987 GAC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64863743 3 + 135191526 GAC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57903649 3 - 122973662 GAG i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80912986 3 + 112612857 GAC i macFas5.chr15 I 23 C 0 s papAnu2.chr15 76962423 3 + 107442819 GAC i papAnu2.chr15 I 23 C 0 s chlSab2.chr12 81226870 3 + 108555830 GAC i chlSab2.chr12 I 23 C 0 s calJac3.chr1 111463388 3 - 210400635 GAC i calJac3.chr1 C 0 C 0 s mm10.chr19 38096424 3 - 61431566 TAT i mm10.chr19 C 0 C 0 s canFam3.chr1 35343216 3 - 122678785 TAC i canFam3.chr1 C 0 C 0 e rheMac3.chr15 79833441 110 + 112192347 I a score=1384368.000000 s hg38.chr9_GL383541v1_alt 149167 371 + 171286 AAGTCCAAACTATCCTTTTTATAATTGAAAGCAATATGAATACAGTGCAAGTAAACCTTCACACATCTTACAATTAGTAATTATCCAGAAGGTCTTGGATTAAGACATTTTATATTTTGCATACTGGTAAGCTGTCACATGATCT-TTACATTTCTTTTTAAATAAATTCTATATTCTAATGACTCTGATCATCAAAAAGCAAAAGAACCCTACTGATAAAAC-----A-ATAAATTTAAAACATAACATTTTAAAC--TAGAGCCT-----------AAAAAAATCAAGTGTTCTCATTATTTGTAAGTTGGGTTTCAACTTCTGTTATATCATCCTTTGTCTGTT-----TGAATT-AGATTTGTAATTGAGGGATTCAATGAACATGGACTAAA s panTro4.chr9 68708579 371 + 137840987 AAGTCCAAACTATCCTTTTTATAATTGAAAGCAATATGAATACAGTGCAAGTAAACCTTCACACATCTTACAATTAGTAATTATCCAGAAGGTCTTGGATTAAGACATTTTATATTTTGCATACTGGTAAGCTGTCACATGATCT-TTACATTTCTTTTTAAATAAATTCTATGTTCTAATGACTCTGATCATCAAAAAGGAAAAGAACCCTACTGATAAAAC-----A-ATAAATTTAAGACATAACATTTTAAAC--TAGAGCCT-----------AAAAAAATCAAGTGTTCTCATTATTTGTAAGTTGGGTTTCAACTTCTGTTATATCATCCTTTGTCTGTT-----TGAATT-AGATTTGTAATTGAGGGATTCAATGAACATGGACTAAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64863746 371 + 135191526 AAGTCCAAACTATCCTTTTTATAATTGAAAGCAATATGAATACAGTGCAAGTAAACCTTCACACACCTTACAATTAGTAATTATCCAGAAGGTCTTGCATTAAGACATTTTATATTTTGCATACTGGTAAGCTGCCACACGATCT-TTACATTTCTTTTTAAATAAATTCTATATTCTAACGAAGCTGATCATCAAAAAGCAAAAGAACCCTACTGATAAAAC-----A-ATAAATTTAAGACATAACATTTTAAAC--TAGAGCCT-----------AAAAAAATCAAGTGTTCTCATTATTTGTAAGTTGGGTTTCAACTTCTGTTATATCATCCTTTGTCTGTT-----TGAATT-AGATTTGTAATTGAGGGATTCATTGAACATGGACTAAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57903652 371 - 122973662 AAGTTCAAACTATCCTTTTTATAATTGAAAGCCATATGAATACAGTGCAAGTAAACCTTTACACATCTTACAATTAGTAATTATCCAGAAGATCTTGGATTAAGACATTTTATATTTTGCATACTGGTAAGCTGTCACATGATCT-TTACATTTCTTTTTAAATACATTCTATATTCTAATGAATCTGATCATCAAAAAGCAAAAGAACCCTACTGATAAAAC-----A-ATAAATTTAAGACTTAACATTTTAAAC--TAGAGCCT-----------AAAAAAATCAAGTGTTCTCATTATTTGTAAGTTGGGTTTCAACTTCTGTTATATCATCCTTTGTCTGTT-----TGAATT-AGATTTGTAATTGAGGGATTGATTGAACATGGACTAAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79833551 367 + 112192347 AAGTCCAAACTATCCTTTTTATAATTGAAAGCAATATGAATACAGTGCAGGTAAACCTTCACACATCTTACAATTAGTAATTATCCAGAAGGTCTTGGATTAAGACATTTTATATTTTGCATACTGGTAAGCTGTCACATGATCT-TTACATTTCTTTTTAAATAAATTCTACATTCTAATGAATCTGATCATCTAAAAGCAAAAGAACCCTACTGATAAAAT-----A-ATAAATTTAAGACATAACATTTTAAAC--TAGAGCCT-----------AAAAAAATCAAGTGTTCTCATTATTTGTAAGTTGGGTTTCAACTTCTGTTATATCATCCTT----TGTT-----TGAATT-AGATTTGTAATTGAGGGATTGATTGAACAGGGACTAAA i rheMac3.chr15 I 110 C 0 s macFas5.chr15 80912989 367 + 112612857 AAGTCCAAACTATCCTTTTTATAATTGAAAGCAATATGAATACAGTGCAGGTAAACCTTCACACATCTTACAATTAGTAATTATCCAGAAGGTCTTGGATTAAGACATTTTATATTTTGCATACTGGTAAGCTGTCACATGATCT-TTACATTTCTTTTTAAATAAATTCTACATTCTAATGAATCTGATCATCTAAAAGCAAAAGAACCCTACTGATAAAAT-----A-ATAAATTTAAGACATAACATTTTAAAC--TAGAGCCT-----------AAAAAAATCAAGTGTTCTCATTATTTGTAAGTTGGGTTTCAACTTCTGTTATATCATCCTT----TGTT-----TGAATT-AGATTTGTAATTGAGGGATTGATTGAACAGGGACTAAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76962426 367 + 107442819 AAGTCCAAACTATCCTTTTTATAATTGAAAGCAGTATGAATACAGTGCAGATAAACCTTCACACATCTTACAATTAGTAATTATCCAGAAGGTATTGGAttaagacattttatattttgcacACTGGTAAGCTGTCACATgatct-ttacatttcttttaaaataaattctacattCTAATGAATCTGATcatcaaaaagcaaaagaaccctactgataaaat-----a-atacatttaagaCATAACATGTTAAAC--TAGAGCCT-----------aaaaaaatcaagtgttctcattatttgtAAGTTGGGTTTTAACTTCTGTTATATCATTCTT----TGTT-----TGAATT-AGATTTGTAATTGAGGGATTGATTGAACATGGACTAAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81226873 362 + 108555830 AAGTCCAAACTATCCTTTTTATAACTGAAAGCAATATGAATACAGTGCAGGTAAACCTTCACACATCTTATGATTAGTAATTATCCAGAAGGTCTTGGATTAAGACATTTTATATTTTGCATACTGGTAAGCTGTCACATGATCT-TTACATTTCTTTTTAAATAAATTCCACATTCTAATGAATCTGATCATCAAAAAGCAAAAGAACCCTACTG-----AT-----A-ATAAATTTAAGACATAACATTTTAAAC--TAGAGCCT-----------AAAAAAATCAAGTGTTCTCATTATTTGTAAGTTGGGTTTTAACTTCTGTTATATCATCCTT----TGTT-----TGAATT-AGATTTGTAATTGAGGGATTGATTGAACATGGACTAAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111463391 368 - 210400635 AAGTCTAAACTATCCTTTTTAT-ATTGAAAGCAATATAAATACAGTGCAAGTAAACCATAACACATGTTACAGTTAGTAA-TGTCTAGAAGGTCTTGGCTTAAGACATTTTATATTTTGCATACTAGTAAGCTTTCACATGATCT-TTACATTTCTTTTTAAATAAATTCTATATTCTAACAAATCTGATCATCAAAAAACAAAAGAACTCTACTGATAACAC-----A-ATAAATTTAAGACATAACATTTTAAAC--TGGAACCT-----------AAAAAAATCAAGTGTTCTTATTATTCA-AAGCTGGGTTTTAACTTCTGTTATATCATCCTTTGTCTGTT-----TGAATT-AGATTTGTAACTGAGGGATTGAACGAACATGGACTAAA i calJac3.chr1 C 0 C 0 s mm10.chr19 38096427 374 - 61431566 ATCTCTTAGCTATTCCATTTATA--TGAGG---ATATGAACACGAAGCCAGGAAACATTCACTCATCAGGCAATTAGAGCTTCCTCTGGGGAGATTGGCTTAGGACATTTTATAGTTTGCATAGCGATAAATGGCCTCATGGTCTAAGATTTCTCTCTTAAAATAAATTCTGTATTCTAATAAATCTGATCATC-GTGAGCAAAAGGACCTTACTAGTAGCACACATAA-ATAAAATTAAGTCGCAACATTTAGAATAGCAGAACCT------------AGAAAGTCAAGTTTTCTCATTAATCATAAGTAGAATTTTTACTTCTGTTCTGTCATCCTTTGTCTTCTTCACGTGAATGAAGATTTATAGTGGTAAGATG----GGACATGGGCCATA i mm10.chr19 C 0 C 0 s canFam3.chr1 35343219 372 - 122678785 ATCTCTAAACTATTC------TAATTTAAAGCAGCCTAAATATGGTCCAAGTAAACTTTTACACATCTTATAATTAGTAATTATTCTGAAGATGTTGGCTTAAGACATTTTATACTTTGCATAGTGGTAAACTGTCACATCATTT-TTAAATTTATTTTGAAACAAATTTTGTATGCTAATGGTTCCCATCCTCAAAGAGCAAAGAGATCCTGCTGGTAACAC-----AGAGAAGTTGAAGACACAACA--TAATAT--TAGAATCtaaaaaaaaaaaaaaaaaatcaaatattCTCATTATTCCTAATTTGAGATTTAGTTTCTGTTATATCTCTTTGTCTTTGTT-----TGAATTAATATTTGTGTTTGAGGGATT----GCACATGAACTGAA i canFam3.chr1 C 0 C 0 a score=434434.000000 s hg38.chr9_GL383541v1_alt 149538 120 + 171286 TGAGCTTGTGCTACGTAAACATT--GTGATACATTCAAAGCAGCTTTGTAATCTGC-AAGTACAGTGAAAATCTAATACAAATGTTTTTAAAAGGTCTCTTAGCTCATCCTATATATGAAAAG s panTro4.chr9 68708950 120 + 137840987 TGAGCTTGTGCTACGTAAACATT--GTGATACATTCAAAGCAGCTTTGTAATCTGC-AAGTACAGTGAAAATCTAATACAAATGTTTTTAAAAGGTCTCTTAGCTCATCCTATATATGAAAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64864117 120 + 135191526 TGAGCTTGTGCTACTTAAACATT--GTGATACATTCAAAGCAGCTTTGTAATCTGC-AAGTACAGTGAAAATCTAATACAAATGTTTTTAAAAGGTCTCTTAGCTCATCCTATATATGAAAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57904023 120 - 122973662 TGAGCTTGTGCTACTTAAATATT--GTGATACATTCAAAGCAGCTTTGTAATCTGC-AAGTACAGTGAAAATCTAATACAAATATTTTTAAAAGGTCTCTTAGCTCATCCTATATATGAAAAG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79833918 120 + 112192347 TGAGCTTGTGCTACTTAAACATT--GTGATATATTCAAAGCAGCTTTGTAAACCAC-AAGTACAGTGAAAATCTAATACAAATGTTTTTAAAAGGTCTCTTAGCTCATCCTATATATGAAAAG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80913356 120 + 112612857 TGAGCTTGTGCTACTTAAACGTT--GTGATATATTCAAAGCAGCTTTGTAAACCAC-AAGTACAGTGAAAATCTAATACAAATGTTTTTAAAAGGTCTCTTAGCTCATCCTATATATGAAAAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76962793 120 + 107442819 TGAGCTTGTGCTACTTAAACGTT--GTGACATATTCAAAGCAGCTTTGTAAACCAC-AAGGACAGTGAAAATCtaatacaaatgtttttaaaaggtcTCTTAGCTCATCCTATATATAAAAAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81227235 120 + 108555830 TGAGCTTGTGCTACTTAAACGTT--GTGATATATTCAAAGCAGCTTTGTAAACCAC-AAGTACAGTGAAAACCTAATACAAATGTTTTTAAAAGGTCTCTTAGCTCATCCTATATATAAAAAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111463759 120 - 210400635 TGAGCTTGTGCTACTTAAACATT--GTGATATATGCAAAGTAGCTTTGTAAACTGC-AAGTGCAGTGAAAATCTAATACAAATGTTTTTAAAAGGTCTCTTAGCTCATCCTGTATATGAAAAG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35343591 123 - 122678785 TGACTTCGTGCTCATTATACCTTAGGTTACACATGTGAAGCAGCTTTATAAACCACAAAGTACAGTGAAAATCTAATATAAATGTTTTGAAAAGTACTCTTTGCTCATCTTGTATATGAAAAG i canFam3.chr1 C 0 C 0 e mm10.chr19 38096801 0 - 61431566 C a score=75016.000000 s hg38.chr9_GL383541v1_alt 149658 22 + 171286 TAGCCTTTAAAATTTGCCTGAT s panTro4.chr9 68709070 22 + 137840987 TAGCCTTTAAAATTTGCCTGAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64864237 22 + 135191526 TAGCCTTTAAAATTTGCCTGAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57904143 22 - 122973662 TAGCCTTTAAAATTTGCCTAAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79834038 22 + 112192347 CAGCCTTTAAAATTTGCCTAAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80913476 22 + 112612857 CAGCCTTTAAAATCTGCCTAAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76962913 22 + 107442819 CAGCCTTTAAAATTTGCCTAAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81227355 22 + 108555830 CAGCCTTTAAAATTTGCCTAAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111463879 22 - 210400635 CAACCTTTAAAATATGCCTAAT i calJac3.chr1 C 0 C 0 s mm10.chr19 38096801 14 - 61431566 TAGCCT--------AGACTAAT i mm10.chr19 C 0 C 0 s canFam3.chr1 35343714 22 - 122678785 GAGACATTAAAATCGGTCTAAT i canFam3.chr1 C 0 I 190 a score=1849255.000000 s hg38.chr9_GL383541v1_alt 149680 470 + 171286 GGAAAGAAATCCAAGACTTTTCT------------GTCTTTCTCTGGAACAGTAGA-TTTAATAAT-------TTATGGTATGGATTTG-TTTTTCCTTCACAGACAACAATAAAAATGTTTGGACTGATAAAATAACTGCATTTAGGACTTTTATTAGTGACACCAACTGGGA---ACACAGATCTTTGTCTTTGGAAATGGAACATAAGCCTCCAGATGGCAAATCACCAGGACTTTGTTCACAATGTGAATGAAGCATGTTGCCAGAAAGTCATTTCCAAAA-AATCAATAGTGTTTGTACTGGAAATGTTT--GAAAAATGCTCAGAAAACCATCAAGTCTAtatgtactttgtggattatct-ggggaaaatgtttaaaacc--tgacaggcatt-tctctgtcacgcagttaacttcttgctttcctcactcttcctgtcaattctttacgaaatgc-cact---aatttcagcattagtatgcacaatataTCGTTAT s panTro4.chr9 68709092 470 + 137840987 GGAAAGAAATCCAAGACTTTTCT------------GTCTTTCTCTGGAACAGTAGA-TTTAATAAT-------TTATGGTATGGATTTG-TTTTTCCTTCACAGACAACAATAAAAATGTTTGGACTGATAAAATAACTGCATTTAGGGCTTTTATTAGTGACACCAACTGGGA---ACATAGATCTTTGTCTTTGGAAATGGAACATAAGCCTCCAGATGGCAAATCACCAGGACTTTGTTCACAATGTGAATGAAGCATGTTGCCAGAAAGTCATTTCCAAAA-AATCAATAGTGTTTGTACTGGAAATGTTT--GAAAAATGCTCAGAAAACCATCAAGTCTAtatgtactttgtggattatct-ggggaaaatgtttaaaacc--tgacaggcttt-tctctgtcacgcagttaacttcttgctttcctcactcttcctgtcaattctttacgaaatgc-cact---aatttcagcattagtatgcacaatataTCGTTAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64864259 467 + 135191526 GGAAAGAAATCCAAGACTTTTCT------------GTCTTTCTCTGGAAGAGTAGA-TTTAATAAT-------TTATGGTATGGATTTG-TTTTTCCTTCACA---CACAATAAAAATGTTTGGACTGATAAAATAACTGCATTTAGGGCTTTTATTAGTGACACCAACTGGGA---TCATAGATCTTTGTCTTTGGAAATGGAATATAAGCCTCCAGATGGCAAATCACCAGGACTTTGTTCACAATGTGAATGAAGCATGTTGCCAGAAAGTCATTTCCAAAA-AATCAATAGTGTTTGTACTGGAAATGTTT--GAAAAATGCTCAGAAAACTATCAAGTCTATATGTACTTTGTGGATTATCT-GGGGAAAATGTTTAAAACC--TGACAGGCTTT-TCTCTGTCACGCAGTTAACTTCTTACTTTCCTCACTCTTCCTGTCAATTCTTTACGAAATGC-CACT---GATTTCAGCATTAGTATGCACAGTATATCATTAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57904165 470 - 122973662 GGAAAGAAATTCAAGATTTTTTT-------------TCTTTCTCTGGAACAGTAGA-TTTAATAAT-------TTATGGCATGGATTTGTTTTTTCCTTCACACACAATAATAAAAATGTTTGGATTGATAAAATAATTGCATTTAGGGCTTTTATTAGTGACACCAACTGGGA---ACATAGATCTTTGTCTTTGGAAATGGAACATAAGCCTCCAGATGGCAAATCGCCAGGACTTTGTTCACAATGTGAATGAAGCATGTTGCCAGAAAGTCATTTCCAAAA-AATCAATAGTGTTTGTACTGGAAATGCTT--GAAAAATGCTCAGAAAACCATCAAGTCTAtatgcactttgtggattatct-ggggaaaatgtttaaaacc--tgacaggcttt-tctctgtcacacagttaacttcttgctttcctcactcttcctgtcaattctttatgaaatgc-cact---gatttcagcattagtatgcacaatatatcattat i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79834060 464 + 112192347 GGAAAGAAATCTAAGACTTT----------------TCTTTCTCTGGAGCAGTAGATTTTAATAAT-------TTATGGTATGGATTTG-TTTTTCCTTCACGCACAACAATAAAAATGTTTGGACTGATAAAATAACTGCATTTAGGGCTTTTATTAGTGACACCAACTGGGA---ACATAGATCTTTGTCTTTGGAAATGGAACATAAGCCTCCAGATGGCAAATCACCAGGACTTTGTTCACAATGTGAATGAAGCATGTTGCCAGAAAGTCATTTCCAAAA-AATCAATAGTGTTTGTGCTGGAAATGTTT--GAAAAATGCTCAGAAAACCATCAAGTCTAtatgcactttgtggattatct-ggggaaaatgtttaaaacc--tgacaggtttt-tctctgtcacgcagttgacttcttgctttcctcattcttcctgtcaattctttatgaaatgc-cact---gatttcagcattagtatgcacaatataTC---AT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80913498 467 + 112612857 GGAAAGAAATCTAAGACTTTTCT------------GTCTTTCTCTGGAGCAGTAGA-TTTAATAAT-------TTATGGTATGGATTTG-TTTTTCCTTCACGCACAACAATAAAAATGTTTGGACTGATAAAATAACTGCATTTAGGGCTTTTATTAGTGACACCAACTGGGA---ACATAGATCTTTGTCTTTGGAAATGGAACATAAGCCTCCAGATGGCAAATCACCAGGACTTTGTTCACAATGTGAATGAAGCATGTTGCCAGAAAGTCATTTCCAAAA-AATCAATAGTGTTTGTGCTGGAAATGTTT--GAAAAATGCTCAGAAAACCATCAAGTCTAtatgcactttgtggattatct-ggggaaaatgtttaaaacc--tgacaggtttt-tctctgtcacgcagttgacttcttgctttcctcattcttcctgtcaattctttatgaaatgc-cact---gatttcagcattagtatgcacaatatatc---at i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76962935 470 + 107442819 GGAAAGAAATCTAagacttttct------------gtctttctctggaACAGTAGA-TTTAATAAT-------TTATGGTAtggatttg-tttttccttcacgcacaacaataaaaatgtttggaCTGATAAAATAACTGCATTTAGGGCTTTTATTAGTGACACCAACTGGGA---ACATAGATCTTTGTCTTTGGAAATGGAACATAAGCCTCCAGATGGCAAATCACCAGGACTTTGTTCACAATGTGAATGAAGCATGTTGCCAGAAAGTCATTTCCAAAA-AATCAATAGTGTTTGTACtggaaatgttt--gaaaaatgcTCAGAAAACCATCAAGTCTATATGCACTTTGTGGATTATCT-GGGGAAAATGTTTAAAACC--TGACAGGTTTT-TCTCTGTCACGCAGTTGACTTCTTGCTTTCCTCATTCTTCCTGTCAATTCTTAATGAAATGC-CACT---GATTTCAGCATTAGTATGCACAATGTATCATTAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81227377 465 + 108555830 GGAAAGAAATCTAAGACTTTTCT------------GTCTTTCTCTGGAACAGTAGA-TTTAATAAT-------TTATGGTATGGATTTG-TTTTTCCTTCACACACAACAATAAAAATGTTTGGACTGATAAAATAACTGCATTTAGGGCTTTTATTAGTGATACCAACTGAGA---ACATAGATCTTTGTCTTTGGAAATGGAACATAAGCCTCCAGATGGCAAATCACCAGGACTTTGTTCACGATGTGAATGAAGCATGTTGCCAGAAAGTCATTTCCAAAA-AATCAATAGTGTTTGTACTGGAAATGTTT--GAAAAATGCTCAGAAAACCATCAAGTCTAtatgcactttgtggattatct-ggggaaaatgtttaaaacc--tgacaggtttt-tctctgtcacgcag-----ttcttgctttcctcattcttcctgtcaattctttatgaaatgc-cact---gatttcagcattagtatgcacaatgtatcattat i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111463901 469 - 210400635 GGAAAGAAATCCAAGACTTCTC--------------TCTTTCTCTGGCACAGTAGA-TTTAATAAT-------TTATGGTATGGATTTG-TTTTTTCTTCACACACAACAATAAAAATGTTAGGACGGATAAAATAACTGCATTTGGGGCTTTTATTAGTGACACCAACTGGAA---ACATAGATCTTTGTCTTTAGAAATGGAACATAAGTCTCCAGATGGCAAATCATCAGGACTTTATTCACAATGTGAGTGAAGCATACTGCCAGAAAGTCATTTCCAAAA-AATCAATAGTGTTTGTACTAGAAATGTTT--GAAAAATGCTCAGAAAACCATCAAGTCT-TACCTACTTTGTGGATTATCT-GGGGAAAATGTTTAAAACCATTGACAGGCTTT-TCTCTGTCATGCAGTTAACTTCTCGCTTTCCTCATTCTTTCTGTCAATTCTTCATGAAATGC-CACT---GATTTCAGCATTAATATGCATAATATATCATTAT i calJac3.chr1 C 0 C 0 s mm10.chr19 38096815 459 - 61431566 TATAAGAAATCAAGCCCTCTTCC------------CCCCCCCC--------ATTAA-TTTAATAATGAATACATTAT--TATGAATTTG-TTTTTCCTTCACATACAACAATAAAACTACTGGGACTGATAAAATAACCACG-TCAATGCTTTTATTCATGACACCAACCGGGACACGAGTGGGTCTTTGAC-TTGGAAATAGAACATGAGTCTCTGGATGGGTGGCCAATGGAACTTTGTTCATAATGTAAATGAAGCGCATCACTAGACATTGGTTACAAAAACAACCAATAATGTTTGTTCTAGAGACATTT--GAAAGATGCTTGGAAAATAA---------CAGCCACTTTG-GAATTATCA-AGGGAAGATACTTAGAACC--TAACAGGCTTCATCCCTGTCACCCAGCTAATTGCTTGTTTTCCTCAGATTGGATGCCAATCTTTGAGGA----C-CACTTGCAGTTTTTATATTCATACACATGGTAGATTATTAT i mm10.chr19 C 0 C 0 s canFam3.chr1 35343926 476 - 122678785 GGAAAGATATGCAAAACTTCTCTTCCTCCCCACCCCCCTTTCTATGGCACAATGAA-TTTAATAAT-------TTATAGTATGGATCTG-TTTTTCTTTCACATAGAAGAATAAAAATGTTTGGCCTGATAAAATAACTGTATTTAGGGCTTTTATTAGTGATATTATCAAAGG---ACATATATCTTT-TCTTCGGAAATGGAACATGAATCTCCAGATGGCAAATCACTGGGACTTTGTTCACAATATGAATGAAGCACATTGCCAGAAATTCATTTCCAAAA-AATCAATGCTGTTTGTACTGGAAATGTTTTGTAAAAATGCTTGGCATTCCATCAA-CCCGtatgcactttgtggattatctgggggaaaatatttaaaacc--tgacaggtttt-cctctgccaggtggttaacctcttgccttcctcct--------tcaattctctgaagaatgtgaact---aattccagcattaatatacacagcatatcattat i canFam3.chr1 I 190 I 14 a score=2205.000000 s hg38.chr9_GL383541v1_alt 150150 1 + 171286 -------A s panTro4.chr9 68709562 1 + 137840987 -------A i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64864726 1 + 135191526 -------A i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57904635 1 - 122973662 -------a i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79834524 1 + 112192347 -------A i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80913965 1 + 112612857 -------a i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76963405 1 + 107442819 -------A i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81227842 1 + 108555830 -------a i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111464370 8 - 210400635 GAGGTTAA i calJac3.chr1 C 0 C 0 s mm10.chr19 38097274 1 - 61431566 -------A i mm10.chr19 C 0 I 9 e canFam3.chr1 35344402 14 - 122678785 I a score=584203.000000 s hg38.chr9_GL383541v1_alt 150151 197 + 171286 TTCTGCTCAAATA----------TATTAAGTAATTCTAggccaggtgtggtggctcacaactgtaatcccagcactttgggaggccaaggcaggcagatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattatctgggcatggtgacgggtgtccgtaatcccag s panTro4.chr9 68709563 197 + 137840987 TTCTGCTCAAATA----------TATTAAGTAATTCTAggccaggtgtggtggctcacaactgtaatcccagcactttgggaggccaaggcaggcagatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattatctgggcatggtgacgggtgtccgtaatcccag i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64864727 197 + 135191526 TTCTGCTCAAATA----------TATTAAGTAATTCTAggccaggtgtggtggctcacaactgtaatcccagcacttcgggaggccaaggcgggcagatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattatctgggcatggtgacgggtgtccgtaatcccag i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57904636 197 - 122973662 ttctgctcaaata----------tattaagtaattctaggccaggtgtggtggctcacaactgtaatcccagcactttgggaggccaaggcaggcagatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctatactaaaaatacaaaaattagctgggcatggtgatgggtgtccgtaatcccag i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79834525 196 + 112192347 CTCTGCTCAAATA----------TA-TAAGTAATTCTAgaccaggtgtggaggctcacacctgtaattccagcactttgggaggccaacgcaggcagatcatctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactgaaaatacaaaaattagctgggcgtggtgacaggtgtctgtaatcccag i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80913966 196 + 112612857 ctctgctcaaata----------ta-taagtaattctagaccaggtgtggaggctcacacctgtaattccagcactttgggaggccaacgcaggcagatcatctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactgaaaatacaaaaattagctgggcgtggtgacaggtgtctgtaatcccag i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76963406 196 + 107442819 CTCTGCTCAAATA----------TA-TAAGTAATtctagactgggtgtggtggctcacacctgtaattccagcactttgggaggccaacgcgggcagatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcgtgttgacgggtgtctgtaatcccag i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81227843 196 + 108555830 ctctgctcaaata----------ta-taagtaattctagactgggtgtggtggctcacacctgtaattccagcactttgagaggccaacgcgggcagatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcgtggtgacgggtgtctgtaatcccag i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111464378 206 - 210400635 TTCTGCTCAAAAAAAAAAAACAGTA-TAAGTAATTGTATgccagatgcagtggttcacgcttataatcccagcattttgggaggtcaaggctggtagatcacctgaggtcaggagtttgagaccagcctggccaacatggtaaaaccccgtatctactaaaaatacaaaaattagccaggcgtaatcatgggtgcctgtactcccag i calJac3.chr1 C 0 C 0 e mm10.chr19 38097275 9 - 61431566 I e canFam3.chr1 35344402 14 - 122678785 I a score=322855.000000 s hg38.chr9_GL383541v1_alt 150348 118 + 171286 ctactcaggaggctgaggcaggagaatcacttgaacccagtaggcagaggttgcagtgagccaagatcgtaccactacactccagccttggcgacagagcgagactccatctcaaaaa s panTro4.chr9 68709760 118 + 137840987 ctactcaggaggctgaggcaggagaatcacttgaacccagtaggcagaggttgcagtgagccaagattgtaccactacactccagccttggcgacagagcgagactccatctcaaaaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64864924 118 + 135191526 ctactcaggaggctgaggcaggagaatcacttgaacccagtaggtagaggttgcagtgagccaagatcgtaccactgcactccagccttggcgacagagcgagactccatctcaaaaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57904833 118 - 122973662 ctactcaggaggctgaggcaggagtatcacttgaacccagtagacagaggttgcagtaagccaagatcgtaccactgcactccagccttggcgacagagcgagactccatctcaaaaa i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79834721 118 + 112192347 ctcctcaggaggttgaggcaggagaatcacttgaacccagtaggcagaggttgcagtgagccgagatcaccccactgcactccagccttggctacagagctagactccatctcaaaaa i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80914162 118 + 112612857 ctcctcaggaggttgaggcaggagaatcacttgaacccagtaggcagaggttgcagtgagccgagatcaccccactgcactccagccttggctacagagctagactccatctcaaaaa i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76963602 117 + 107442819 ctcctcaggaggctgaggcagaagaatcacttgaacccagtaggcagaggttgcagtgagccgagatcaccccactgcactccagccttggcgacagagcgagactccatctc-aaaa i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81228039 117 + 108555830 ctcctcaggaggctgaggcaggagaatcacttgaacccagtaggcagaggttgcagtgagccgagatcacccgactgcactccagccttgacaacagagcgagactccatctc-aaaa i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111464584 117 - 210400635 ctactcaggaagctgaggcaggaaaattgcttgaacccggtaggcagaggttgcagtgagccgagatcacaccactgcactccagcctaggtgacagagcgagactttgtctc-aaaa i calJac3.chr1 C 0 C 0 s mm10.chr19 38097284 11 - 61431566 CTGCTTAGAAG----------------------------------------------------------------------------------------------------------- i mm10.chr19 I 9 C 0 e canFam3.chr1 35344402 14 - 122678785 I a score=2854824.000000 s hg38.chr9_GL383541v1_alt 150466 761 + 171286 TTAACAATAATAATAAAAGTAATTCCAGGGTTTTATGCAGATGG-TAACCATTCTTCTTCCTACTGTGTTCTGTTGTTCATACGGACGCTGAAGAGCTGCTTGTAGTTTGCCTATGCTCGCCTGCTGTGCTAAGTGAATCCCAGGTTGTTAGGAGTTTCCAGTTTTCAGTTAACAGAATTCATAGCTTTATTTTTACGAATTTCAGGTGGTTTTCATGAGCCTATGCAAAAGTTTCTGGGACTGTGGGCTTGTAGCCCTGGATGACATTACAATACAATTGGGAAGCTGCTCATCTTCAGGTAAGACGGC--------AATCATTTTA---G--CTCTGTCTCTCTGACCTAT-ACATACATTTCCTGTATCGCTGAGA----ATCACATACATTTCATCTG-----TGCT-------A-GTCCATCCTTTGC-----TTTTGTTGACA-AAGTGTCTCC-TGCAGAG--CTGTGTAGCAGGCTTTGAAATTTAGAAATGATGATTCCAGTGTAAtatgtgtctttgtacatgtgacttaaccc-------------ctttatcctcatttggaagggaa------ctagtggtatctacctGAATATTGGGGATAATAC--ATACATTTTC------------------CACAAAACAGTGCTTTAAAAACAA----------ATATCTTCTACTATAATTATTACTATTACTGTTGTTTTTGTTATCTTACATGAATGCAGATTTTCAAGCAATATTAATGAAATTTTTATTTCACAGATACT---------------------------------------------------TGC-------------------------------------------------------TAAGCATGTAATTTAAAAATTTTAAT------AA-----ACATTTTCTAAGTGAATTAAATGACAGTGGAACAA s panTro4.chr9 68709878 781 + 137840987 TTAACAATAATAATAAAAGTAATTCCAGGGTTTTATGCAGATGG-TAACCATTCTTCTTGCCACTGTGTTCTGTTGTTCATACGGACGCTGAAGAGCTGCTTGTAGTTTGCCTATGCTCGCCTGCTGTGCTAAGTGAATCCCAGGTTATTAGGAGTTTCCAGTTTTCAGTTAACAGAATTCATAGCTTCATTTTTACGAATTTCAGGTGGTTTTCATGAGCCTATGCAAAAGTTTCTGGGACTGTGGGCTTGTAGCCCTGGATGACATTACAATACAATTGGGAAGCTGCTCATCTTCAGGTAAGACAAC--------AATCATTTTA---GCTCTCTGTCTCTCTGACCTAT-ACATACATTTCCTGTATTGCTGAGA----ACCACATACATTTCATCTG-----TGCT-------A-GTCCATCCTTTGC-----TTTTGTTGACA-AAGTGTCTCC-TGCAGAG--CTGTGTAGCAGGCTTTGAAATTTAGAAATGATGATTCCAGTGTAAtatgtgtctttgtacatgtgacttaaccc-------------ctttatcctcatttggaagggaa------ctagtggtatctacctgaatattggggataatacatatacattttcctagcat--aagacctggcacaaaacagtgctttaaaaacaa----------atatcttctactatAGTTATTACTATTACTGTTGTTTTTGTTATCTTACATGAATGCAGATTTTCAAGCAATATTAATGAAATTTTTATTTCACAGATACT---------------------------------------------------TGC-------------------------------------------------------TAAGCATGtaatttaaaaattttaat------aa-----aCATTTTCTAAGTGAATTAAATGACAGTGGAACAA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64865042 782 + 135191526 TTAATAATAATAATAAAAGTAATTCCAGGGTTTTATGCAGATGG-TAACCATTCTTCTTGCCACTGTATTCTGTTGTTCATACGGACAATGAAGAGCTGCTTGTAGTTTGCCTATGCTCACCTGCTGTGCTAAGTGAATCCCAGGTTGTTAAGAGTTTCCAGTTTTCAGTTAACAGAATTCATAGCTTTATTTTTACGAATTTCAGGTGGTTTTCATGAGCCTATGCAAAAGTTTCTGGGACTGTGGGCTTGTAGCCCTGGATGACATTACAATACAATTGGGAAGCTGCTCATCTTCAGGTAAGACGGC--------AATCATTTCA---GCTTTCTGTCTCTCTGGCCTAT-ACATACATTTCCTGTATCGCTGAGA----ACCACATACATTTCATCTG-----TGCT-------AGGTCCATCCTTTGC-----TTTTGTTGACA-AAGTGTCTCC-TGCAGAG--CTGTGTGGCAGGCTTTGAAATTTAGAAATGATGATTCCAATGTAAtatgtgtctttgtacatgtgacttaaccc-------------ctttatcctcatttggaagggaa------ctagtggtatctacctgaatattggggataatacatatacattttcctagcat--gagacctggcacaaaacagtgctttaaaaacaa----------atatcttctactatAATTATTACTATTACTGTTGTTTTTGTTATCTTACATGAATGCAGATTTTCAAGCAATATTAATGAAATTTTTATTTCACAGATACT---------------------------------------------------TGC-------------------------------------------------------TAAGCATGtaatttaaaaattttaat------aa-----atGTTTTCTAAGTGAATTAAATGACAGTGGAACAA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57904951 782 - 122973662 ttaataataataataaaagtaatttcagagttttatgcagatgg-taaccattcttcttgccactatgttctgttgttcatacggacgatgaagagctgcttgTAGTTTGCTTATGCTCGCTTGCTGTGCTAAGTGAATCCCAGGTTgttaagagtttccagttttcagttaacagaattcacagctttaTTTTTATGAATTTCAGGTGGTTTTCATGAGCCTATGCAAAAGTTTCTGGGACTGTGGGCTTGTAGCCCTGGATGACATTACAATACAATTGGGAAGCTGCTCATCTTCAGGTAAGACAGC--------AATCATTTCA---GCTCTCTGTCTCTCTGGCCTAT-GCATACATTTCCTGTATCGCTGAGA----ACCACATACATTTCATCTG-----TGCT-------A-GTCCATCCTTTGC-----TTTTGTTGACA-AAGTGTCTCC-TGCAGAG--CTGTGTAGCAGGCTTTGAAATTTAGAAATGATGATTCCAATGTAATACgtgtctttgtacatgtgacctaaccc-------------ctttaccctcatttggaagggaa------ctaatggtatctacctgaatactggggataatacatatacattttcctagcata-aagacctggcacaaaacagtgctttaaaaacaa----------atatcttctactatAATTATTACTATTACTGTTGTTTATGTTATCTTATATGAATGCAGATTTTCAAGCAATATTGATGAAATTTTTATTTCACAGATACT---------------------------------------------------TGC-------------------------------------------------------TAAGCATGTAATTTAAAAATTTTAAT------AA-----ACATTTTCTAAGTGAATTAAATGACAGTGGAACAA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79834839 781 + 112192347 TTAATAATAATAATAAAAGTAATTCCCGGGTTTTATGCAGATGG-TAACCATTCTTCTTGCCACTGTGTTCTGTTGTGCATACAGATGATGAAGAGCTGTTTGTAGTCTGCTTATGTTCGTCTGCTGTGCTAAGTGAATCCCAGGTTGTTAAGAGTTTCTAGTTTTCAGTTAACAGAATTCATGGCTTTATTTTTATAAATTTCAGGTGGTTTTCATGAGCCTATGCAAAAGTTTCTGGGACTGTGGGCTTGTAGCCCTGGATGACATTACAATACAATTGGGAAGCTGCTCATCTTCAGGTAAGACAGC--------AATCATTTCA---GCTCTCTGTCTCTCTGACCTCT-ACATACATTTCCTGTATCACTGAGA----ACCACATACATTTCATCTG-----TGCT-------A-GTCCATCCTTTGC-----TTTTGTTGACA-AAGTGTCTCC-TGCAGAG--CTGTGTAGCAGGCTTTGAAATTTAGAAATGATGATTCCAATGTAATACAtgtctttgtacatgtgacttaaccc-------------ctttatcctcatttggaagggag------ctagtgatatctacctgaatactgggaataacacatatacattttcctagcat--aagacctggcacaaaacagtgctTTAAAAGCAA----------ATATCTTCTACTATAATTATTACTATTACTGTTGTTTTTGTTATCTTACATGAATGCAGATTTTCAAGCAATATTGATGAAATTCTTATTTCACAGATATT---------------------------------------------------TGC-------------------------------------------------------TAAGCATATACTTTAAAAATTTTAAT------AA-----ACATTTTCTAAGTGAATTAAATGACAGTGGAACAA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80914280 781 + 112612857 ttaataataataataaaagtaattcccgggttttatgcagatgg-taaccattcttcttgccactgtgttctgttgttcatacagatgatgaagagctgtttgTAGTCTGCTTATGTTCGTCTGCTGTGCTAAGTGAATCCCAGGTTGTTAAGAGTTTCTAGTTTTCAGTTAACAGAATTCATGGCTTTATTTTTATAAATTTCAGGTGGTTTTCATGAGCCTATGCAAAAGTTTCTGGGACTGTGGGCTTGTAGCCCTGGATGACATTACAATACAATTGGGAAGCTGCTCATCTTCAGGTAAGACAGC--------AATCATTTCA---GCTCTCTGTCTCTCTGGCCTCT-ACATACATTTCCTGTATCACTGAGA----ACCACATACATTTCATCTG-----TGCT-------A-GTCCATCCTTTGC-----TTTTGTTGACA-AAGTGTCTCC-TGCAGAG--CTGTGTAGCAGGCTTTGAAATTTAGAAATGATGATTCCAATGTAATACATGTCTTTGTACATGTGACTTAACCC-------------CTTTATCCTCATTTGGAAGGGAG------CTAGTGATATCTACCTGAATACTGGGAATAACACATATACATTTTCCTAGCAT--AAGACCTGGCACAAAACAGTGCTTTAAAAGCAA----------ATATCTTCTACTATAATTATTACTATTACTGTTGTTTTTGTTATCTTACATGAATGCAGATTTTCAAGCAATATTGATGAAATTCTTATTTCACAGATATT---------------------------------------------------TGC-------------------------------------------------------TAAGCATATACTTTAAAAATTTTAAT------AA-----ACATTTTCTAAGTGAATTAAATGACAGTGGAACAA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76963719 781 + 107442819 ttaataataataataaaagtaattctAGGGTTTTATGCAGATGG-TAACCATTCTTCTTGCCACTGTGTTCTGTCGTTCATACAGATGATGAAGAGCTGTTTGTAGTTTGCTTATTCTCATCTGCTGTGCTAAGTGAATCCCAGGTTGTTAAGAGTTTCCAGTTTTCAGTTAACAGAATTCAtggctttatttttatgaatttcagGTGGTTTTCATGAGCCTATGCAAGAGTTTCTGGGACTGTGGGCTTGTAGCCCTGGATGACATTACAGTACAATTGGGAAGCTGCTCATCTTCAGGTAAGACAGC--------AATCATTtca---gctctctgtctctctggcctAT-ACATACATTTCCTGTATCACTGAGA----ACCACATACATTTCATCTG-----TGCT-------A-GTCCATCCTTTGC-----TTTTGTTGACA-AAGTGTCTCC-TGCAGAG--CTATGTAGCAGGCTTTGAAATTTAGAAATGATGATTCCAATGTAATACGTGTCTTTGTACATGTGACTTAACCC-------------CTTTATCCTCATTTGGAAGGGAG------CTAGTGATATCTACCTGAATATTGGGaataatacatacacattttcCTAGCAT--AAGACCTGGCATAAAACAGTGctttaaaagcaa----------atatcttctactataattattactattactgttgTTTTTGTTATCTTACATGAATGCAGATTTTCAAGCAATATTGATGAAATTCTTATTTCACAGATATT---------------------------------------------------TGC-------------------------------------------------------TAagcatatactttaaaatttttaat------aa-----acattttctaactGAATTAAATGACAGTGGAACAA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81228156 781 + 108555830 ttaataacaataataaaagtaattctagggttttatgcagatgg-taaccattcttcttgccactgtgttctgttgttcatacagatgatgaagagctgtttgTAGTCTGCTTATGCTCGTCTGCTGTGCTAAGTGAATCCCAGGTTGTTAAGAGTTTCCAGTTTTCAGTTAACAGAATTCATGGCTTTATTTTTATGAATTTCAGGTGGTTTTCATGAGCCTATGCAAAAGTTTCTGGGACTGTGGGCTTGTAGCCCTGGATGACATTACAGTACAATTGGGAAGCTGCTCATCTTCAGGTAAGACAGC--------AATCATTTCA---GCTCTCTGTCTCTCTGGCCTCT-ACATACATTTCCTGTATCACTGAGA----ACCACATACATTTCATCTG-----TGCT-------A-GTCCATCCTTTGC-----TTTTGTTGACA-AAATGTCTCC-TGCAGAG--CTGTGTAGCAGGCTTTGAAATTTAGAAATGATGATTCCAATTTAATACGTGTCTTTGTACATGTGACTTAACCC-------------CTTTATCTTCATTTGGAAGGGAG------CTAGTGATATCTACCTGAATATTGGGAATAATACATATACATTTTCCTAGCAT--AAGACCTGGCATAAAATAGTGCTTTAAAAGCAA----------ATATCTTCTACTATAATTATTACTATTACTGTTGTTTTTGTTATCTTACATGAATGCAGATTTTCAAGCAATATTGATGAAATTCTTATTTCACAGATATT---------------------------------------------------TTC-------------------------------------------------------TAAGCACATACTTTTAAAATTTTAGT------AA-----ACATTTTCTAAGTGAATTAAATGACAGTGGAATAA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111464701 776 - 210400635 TT--TAATAATAATAAAAGTAACTTTAGGGTCTTATGCAGATGG-TAACCATTCTGCTTGCCACTGTGTTCTGTCGTTCATACAAATGAAAAAAAGCGTCTTGTAATTTGCCTATGCTCGCCTGCTGTGCTAAGTGAATCCCAGGTTGTTAAGAGTTTCCAGTTTTCAGTTAACAGAATTTATA--TTTATTTTTATGAATTGCAGGTGGTTTTCATGAGCCTCTGCAAAAGCTTCTGGGACTGTGGGCTTGTAGCCCTGGATGATATTACAGTACAGTTGGGAAGCTGCTCGTCTTCAGGTAAGAAGGC--------AGTCATTTCA---G--CTCTGTCTCTCTGGCCTAA-ACATACATTTCCTGTATCTCTGAGA----ACCACACACATTTCATCTG-----TGCT-------A-GTCCATCCTTTGC-----TTTTCTTGAC-----TGTCTCC-TGCAGAG--CTGTGTAGCAGGCTTTGAAATTTAGAGATGATGATTGCAATGTAATACgtgtctttgtacatgtgactaaaccc-------------ctttgtcctcatttggaagggag---------atgatatctacctgaatattggggataatacatacacattttcctaacat--aagacctggtacaaaacagtgctTTAAAAACACTGTAACACCTGTATCTTCTACTATAATTATTGCTATTATCATTGTTTTTGTTCTCTTACATGAATGCAGATTTTCAAGCAATACTGATGAAATTCTTGTTTCACAGGTACT---------------------------------------------------TGC-------------------------------------------------------TAAACatataatttaaaaattttaat------aa-----aCATTTTCTAAGTGAATTAAATGAC--TGGAACAA i calJac3.chr1 C 0 C 0 s mm10.chr19 38097295 758 - 61431566 ---------------AATGCAGCTCCAAGGTCATATCCCAACAG-GAACCACTCTTCGCACCACTGTATCCTGCCCCGCACATGGGCAAGGAGAGGGTGTTTCTAAT-TGCTTGTGCAGCGATGTTTCGCTGAGTAAATGCCAGGCTG-AAAGGGTTTCC-GTTTTCAGCTAACAACATTCATAGCTTAATTTTTATGAATTACAGGTGGTTTTTATGAGCCTGTGCAAAAGCTTTTGGGACTGTGGCCTGGTAGCCCTGGATGACATTACCATACAACTAGGAAACTGCCGGTCTCCAGGTAAGAAGACTGACTATTAGTCATTTCA---ATTGTGAGTCTTTCTACCCTGTGACAGACACTTCCAGGTCCTCTAGGA----ACCTCATACATTTGACCTA-----CGCT-------A-TTCTTTCCTTTAC-----TTTTCTTGACA-GACAGGCTTC-TCCAGAGAATTTTGTAGTAGAGTCTACAAGTTGGAAATAAAGGCTCTAGTGTTCTGTACGGCTTCGTATGTACGGCTTTCCCTGATTGTAGGAAAGTTTTACCTTTA-TTGTAAGGAAA---------GCAATACCTCCCTGAATGCTGGGGATGGTGC----------TC---------ACGAACTGTCTCCAAATAGTACTTGAAAAACAA----------GTGTCCTTTAGCTTA---ACTAACATTATAGTTAGCATTGTTCATTTAGA-GAATACACATTTCCAAGTCATACTGATAGCATTGTTATTTTACAAATGCC---------------------------------------------------TCT-------------------------------------------------------GAGATGTACACTATTAAATGTTTAAT------AAAGATGATATCTTC---------TAAATGACAGTAAAACAA i mm10.chr19 C 0 I 1320 s canFam3.chr1 35344416 871 - 122678785 ttaaaaaaaagaatagaagtagtttcagggtcacgtataaatgacttGCTGTAACTCATGCCACTAGGACCTATAGTTCATGTGGACAAGGAAGAGGGCTCTGTGGTTTGCTTATGCATGCTT--TGGACTAAGTAAATCCCAAGTTG-TAAGAATTTCTAATTTGCAGCTAATGGAATTCATAGTTTTCTTTCTCGGAATTGTAGGTGGTTTTCATCAGCCTATGCAAAAGTTTTTGGGACTGTGGACTGGTAGCCCTGGACGACATTACAATAGAATTGGGAAGCTGCTCATCTCCAGGTAAGACAGC--------CAAGGTTTCAAGCGCCCTTTGTCTCCCAGGCCTGT-GCCAGCACATCCTGTTTCTCTAAGAATACACCAAATACATTTAATCTGGGGCTTGCTTTTGTGGG-GTTTTTTTGTTGTTGTTGTTTTCTTGCCAGAAGTGCCTCTGTCCAGAT--CTGTGTAGTAAGTTTTAGAATTTAGAAATGATGATTTGTATATAAtgtatgactttgtacatgtgacttgactt-------------ctatatcctcatctttaagagaagtagtaatagtaatacctacctGAACAGTGGGAATAATACCTGTACATG-CCCTCGCATGCGGGACCTGGCA---------------------------------------------------------------TTTTTAATGTTGTCTTACATGAATGTAGATTTTCAAGTGATATTGATGAAATCATTATTATACAGATACTATACTAAACATGTAATTTTTCTTTTTCCTTTTTTTTTTTTTAgagaggtagtgcagggcagagggagagagagaatcttaggcaggcgccatacccagtgtggagcctgTAAGCATGTAATTTTTAAATGATAATGAAATGAA-----ATATTTTCTAAGTGAATTAAATGACAGTGGAACAG i canFam3.chr1 I 14 C 0 a score=508408.000000 s hg38.chr9_GL383541v1_alt 151227 151 + 171286 TAGACCAAGCAATGATGATAGTAGCAAAATAAAGTCATGGTAGCTAGCTATGTGTCATACATTACGCCTAATGAGAAAATGGTGCATAACTCAATCCCAATCATTGATCTGTATCTGCTAATTACCATTGCATCCTACATCATAGG-ACATC s panTro4.chr9 68710659 151 + 137840987 TAGACCAAGCAATGATGATAGTAGCAAAATAAAGTCATGGTAGCTAGCTATGTGTCATACATTACGCCTAATGAGAAAATGGTGCATAACTCAATCCCAATCATTGATCTGTATCTGCTAATTACCATTGCATCCTACATCATAGG-ACATC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64865824 151 + 135191526 TAGACCAAGCAATGATGATAGTAGCAAAATAAAGTCATGGTAGCTAGCTATGTGTCATACATTATGCCTAATGAGAAAATGGTGCATAACTCAATCCTGATCATTGGTCTGTATCTGCTCATTACCATTGCATCCTACATCATAGG-ACATC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57905733 150 - 122973662 TAGACCAAGAAATGATGATAGCAGCAAAATAAAGTCATGGTAGCTAGCTATGTGTCATACATTATGCCTAATGAGAAAATGGCGCATAACTCAA-CCCGACCATTGGTCTGTATCTGCTAATTACCATTGCATCCTATATCATAGG-ACATC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79835620 151 + 112192347 TAGATCAAGCAATGATGATAGTAGCAAAATAAAGTCATGGTAGCTAGCCATGTGTCATACATTACGTCTAATGAGAAAATGATGCATAACTCAATCCCGATCATTGGTCTGTATCTGCTAATTACCACTGCATCCTACATCATAGG-ACATC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80915061 151 + 112612857 TAGATCAAGCAATGATGATAGTAGCAAAATAAAGTCATGGTAGCTAGCCATGTGTCATACATTACGTCTAATGAGAAAATGATGCATAACTCAATCCCGATCATTGGTCTGTACCTGCTAATTACCACTGCATCCTACATCATAGG-ACATC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76964500 149 + 107442819 TAGATCAAGCAATGATGATAGTAGCAAAATAAAGTCAT-GTAGCTAGCCACGTGTCATACATTATGTCTAATGAGAAAATGATGC-TAACTCAATCCCgatcattggtctatatctgctAATTACCATTGCATCCTACGTCATAGG-ACATC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81228937 151 + 108555830 TAGATCAAGCAATGATGATAGTAGCAAAATAAAGTCATGGTAGCTAGCTATGTGTCATACATTATGTCTAATGAGAAAATGATGCATAACTCAATCCCGATCATTGGTCTGTATCTGCTAATTACCATTGCATCCTACATCATAGG-ACATC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111465477 146 - 210400635 TAGACCAAGCAATGATGATAGTAGCAAAATAAAGTCATGGTATCTAGCTATGTATTGGACATTGTGTCTAATGAGAAAATGGCACAT-----AATCCAGATCATTGGTCTGTATCTGCTAATTACCATTGCATCCTACATCATAGG-ACATC i calJac3.chr1 C 0 C 0 s canFam3.chr1 35345287 133 - 122678785 TGGACCAAGCATGGATGACAGGGACAAAATAAAG--ATGG----TGGCCATGTGTCGGACACTATGTCTAATGAGATAATGGTGCATACCTCA-------------GCCTGTATCTACTGATTACCACTGCATCCTAAACCATAGGTGTATC i canFam3.chr1 C 0 C 0 e mm10.chr19 38098053 1320 - 61431566 I a score=194532.000000 s hg38.chr9_GL383541v1_alt 151378 52 + 171286 CATTTCTTTGACACACAGGCAAATCGTGGTATCAGTCTGGTGCTGGAGAATA s panTro4.chr9 68710810 52 + 137840987 CATTTCTTTGACACACAGGCAAATCGTGGTATCAGTCTGGTGCTGGAGAATA i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64865975 52 + 135191526 CATTTCTTTGACACACAGGCAAATCGTGGTATCAGTCTGGCACTGGAGAATA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57905883 52 - 122973662 CATTTCTTTGACACACAGACAAATCGTGGTATCAGTCTGGCACTCGAGAATA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79835771 48 + 112192347 CATTTATTTG----ACAGGCAAATCGTGGTATCAGTCTGGCACTGGAGAATA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80915212 48 + 112612857 CATTTATTTG----ACAGGCAAATCGTGGTATCAGTCTGGCACTGGAGAATA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76964649 52 + 107442819 CATTTATTTGACACACAGGCAAATCGTGGTATCAGTCTGGCACTGGAGAATA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81229088 52 + 108555830 CATTTATTTGACACACAGGCAAATCGTGGTATCAGTCTGGCACTGGAGAATA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111465623 52 - 210400635 CTTTTCTTTGACACACAGGCAAATTGTGGTATCAGTCTGACACTGGAGAATT i calJac3.chr1 C 0 C 0 s mm10.chr19 38099373 52 - 61431566 CATCTCTTAAACAAGCAGTCAATGTACGGCACCTGTCTGATACTGGAGAACA i mm10.chr19 I 1320 I 101 s canFam3.chr1 35345420 52 - 122678785 TATTTCTCTAACAAACAGGCAGATTGTGGTATCAGTGTGGCACTGCAGGATC i canFam3.chr1 C 0 C 0 a score=75708.000000 s hg38.chr9_GL383541v1_alt 151430 20 + 171286 ATCTCCATGTTTATTTAATT s panTro4.chr9 68710862 20 + 137840987 ATCTCCATGTTTATTTAATT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64866027 20 + 135191526 ATCTCCATGTTTATTTAATT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57905935 20 - 122973662 ATCTCCATGTTTATTTGATT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79835819 20 + 112192347 ATCTCCATGTTTATTTAATT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80915260 20 + 112612857 ATCTCCATGTTTATTTAATT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76964701 20 + 107442819 ATCTCcatgtttatttaatt i papAnu2.chr15 C 0 I 323 s chlSab2.chr12 81229140 20 + 108555830 ATCTCCATGTTTATTTAATT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111465675 20 - 210400635 ATCTCCAGGTTTATTTAATT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35345472 20 - 122678785 ATCTCCTTGTTTAGCTAATT i canFam3.chr1 C 0 C 0 e mm10.chr19 38099425 101 - 61431566 I a score=70776.000000 s hg38.chr9_GL383541v1_alt 151450 18 + 171286 AAAAGACAATTTGTTCTT s panTro4.chr9 68710882 18 + 137840987 AAAAGACAATTTGTTCTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64866047 18 + 135191526 AAAAGACAGTTTGTTCTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57905955 18 - 122973662 AAAAGACAATTTGTTCTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79835839 18 + 112192347 AAAAGACAATTTGTTCTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80915280 18 + 112612857 AAAAGACAATTTGTTCTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76965044 18 + 107442819 aaaagacaatttgttCTT i papAnu2.chr15 I 323 C 0 s chlSab2.chr12 81229160 18 + 108555830 AAAAGACAACTTGTTCTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111465695 18 - 210400635 AAAAGACAATTTGTTCTT i calJac3.chr1 C 0 C 0 s canFam3.chr1 35345492 18 - 122678785 AAAAGATAATTTGTTTTT i canFam3.chr1 C 0 C 0 e mm10.chr19 38099425 101 - 61431566 I a score=6040068.000000 s hg38.chr9_GL383541v1_alt 151468 1723 + 171286 AGTCTCTTAATTTGCCAGGCACTGCAAGGACAACCCAGAT--------------AAAAATCGTTCCACTCAAGGCATAGAAGAAAGAATGAGGTTTCATTAACCAGTACTGTGTGTAAAATAAAATGAAGTAAAACAGTGATCACAAAAGAGACATA--TGAAACAAGCTATTTATTAGAAAAATTTGGCTAAGAATCTGGATATAGGGAGGTACAACCAAGTTTAGTCAAAGGAA-AAGTCCCCAATAAATTGGGAAGAAGCACCATTC---TAATAATTATGAATG---TTATTGAAGATAGCATTCAAAGACATAAAC--ATTGGATT---------------------------------------------------------------TGGGAAAAGGAAAATAAACCTCTGGGTGGCAAaata---agttctaaa-----att-----------taattattgagaacttca--------cattaaaaatgatcactttacatataccatctcatttaatcctcacagacccatgaagtgactaccatcaatattcccacattagagataagaactctaaggcacagagaagtgaagtcatttgttccacac------agctaTGCCTCCAGGAGTCCATTT-AGCACTCTCACATTCTCCCCTACCTACAAAG------------------CAACTGTGGAGTTGTTATGAGGATACCCTTCACTCATCCAGGATTTCTGAAGAAAGTGCCTGCATTATGAAATTTTATTATTTT--------CCATATTTTCATAAAGGCAATATACCTATAATTTCCAGAGCTTTATAAA-------AAGAAATTCACAAAAATTCACAAGTCAGAGAAAGTTTTTTTCTCAAAG-TAGCCCAGTATTTTAG-ATCTGTATATCTGATTGTTCTCTATGTCTGTGGCAGGACCCGCAGTGGAATGCAGCCTCTAGCTGGAAGCAGTGGCTCCGTGTAGGTGGGCCACCAGT----------GGGGG-----CTGCCTC---TCCAT-CGCATGGCATATG----------------GCC--------AGACAACATTCATACATGCAGAGTGGGCTGCT----AGCAAC------------ACAGAGTCATTGAAAGAGTCTCAGTGATTGCAACATCTGCTATTTTCTTGCAGAGAAACTTCCACCTCCACCTGGAGAGTGTACTTTCGAGCAAGATGAATGTACATTTACTCAGGAGAAAAGAAACCGGAGCAGCTGGCACAGGAGGAGGGGAGAAACTCCCACTTCCTACACAGGACCAAAGGGAGATCACACTACTGGGGTAGGTGAGTTATGCCACGTGGTGCTGTTTCCTAAGGAAAGCTTCTAAAATAGCATTCTA-GGAATCGTTTACTGCATTTTGAAATGTGCAAAATTATGTCTTGTGTCTAGAATGAAATGCACTTGTGATTCTACACACACAGGATGATTTG----ATATGGGCAT-TGAATATCTCATCCTTTCTGTTTATTACATTGCTT-ATGTACATTGCTGCA-----GCAAGGATCTAACAGGGCTTACAAAGTTCTGCACACAAA--------GAATAGAAGTAAGTTAAAAGGTCAA--AGAGAGGGACAA-AGTAGGGG------AAAAAATGGTAATCTAAATTGGAGCCAGGGCCGAGGCCTAATATACAAAATATATTGGCAGAC----------AAAGGAAGAGGCA------TACAGGTT--TGACTCCAAGCTTTC-AGTAGCCAAAACGCACCTGTAAAACATGATTC-------------------AC----------------AGAATgagcagtccacgtgggtgggctataagcaaggatggggtgcattttctgtagaaaatgtataaactgcaataaaacagagtaagagttcatctacttcatattaccaacatgta---------------------tcagcaattgtaaacattgtcagggacaaaataTGTCCCGTAggccatg s panTro4.chr9 68710900 1718 + 137840987 AGTCTCTTAATTTGCCAGGCACTGCAAGGACAACCCAGAT--------------AAAAATCGTTCCACTCAAGGCATAGAACAAAGAATGAGGTTTCATTAACCAGTACTGTATGTAAAATAAAATGAAGTAAAACAATGATCACAAAAGAGACATA--TGAAACAAGCTATTTATTACAAAAATGTAGCTAAGAATCTGGATATAGGGAGGTACAACCAAGTTTAGTCAAAGGAA-AAGTCCCCAATAAATTGGGAAGAAGTACCATTC---TAATAATTATGAATG---TTATTGAAGATAGCATTCAAAGACATAAAC--ATTGGATT---------------------------------------------------------------TGGGAAAAGGAAAATAAACCTCTGGGTGGCAAaata---agttctaaa-----att-----------taattattgagaacttca--------cattaaaaatgatcactttacatataccatctcatttaatcctcacagacccatgaagtgactaccatcaatattcccacattagagataagaactctaaggcacagagaagtgaagtcatttgttccacac------agctaTGCCTCCAGGAGTCCATTT-AGCACTCTCACATTCTCCCCCACCTACAAAG------------------CAACTGTGGAGTTGTTATGAGGATACCCTTCACTCATCCAGGATTTCTGAAGAAAGTGCCTGCATTATGAAATTTTATTATTTT--------CCATATTTTCATAAAGGCAATATACCTATAATTTCCAGAGCTTTATAAA-------AAGAAATTCACAAAAATTCACAAGTCAGAGAAAGTTTTTTTCTCAAAG-TAGCCCAGTATTTTAG-ATCTGTATATCTGATTGTTCTCTATGTCTGTGGCAGGACCCTCAGTGGAATGCAGCCTCTAGCTGGAAGCAGTGGCTCCGTGTAGGTGGGCCACCAGT----------GGGGG-----CTGCCTC---TCCAT-CGCATGGCATATG----------------GCC--------AGACAACATTCATACATGCAGAGTGGGCTGCT----AGCAAC------------ACAGAGTCATTGAAAGAGTCTCAGTGATTGCAACATCTGCTATTTTCTTGCAGAGAAACTTCCACCTCCACCTGGAGAGTGTACTTTCGAGCAAGATGAATGTACATTTACTCAGGAGAAAAGAAACCGGAGCAGCTGGCACAGGAGGAGGGGAGAAACTCCCACTTCCTACACAGGACCAAAGGGAGATCACACTACTGGGGTAGGTGAGTTATGCCACGTGGTGCTGTTTCCTAAGGAAAGCTTCTAAAATAGCATTCTA-GGAATCGTTTACTGCATTTTGAAATGTGCAAAATTATGTCTTGTGTCTAGAATGAAATGCACTTGTGATTCTACACACACAGGATGATTTG----ATATGGGCAT-TGAATA--TCATC----CTGTTTATTACATTGCTT-ATGTACATTGCTGCA-----GTAAGGATCTAACAGGGCTTACAAAGTTCTGCACACAAA--------GAATAGAAGTAAGTTAAAAGGTCAA--AGAGAGGGACAA-AGTAGGGG-----AAAAAAATGGTAATCTAAATTGGAGCCAGGGCCGAGGCCTAATATACAAAATATATTGGCAGAC----------AAAGGAAGAGGCA------TACAGGTT--TGACTCCAAGCTTTC-AGTAGCCAAAACTCACCTGTAAAACATGATTC-------------------AC----------------AGAATgagcagtccacgtgggtgggctataagcaatgatggggtgcattttctgtagaaaatgtataaactgcaataaaacagagtaagagttcatctacttcatattaccaacatgta---------------------tcagcaattgtaaacattgtcagggacaaaatatgccccGTAggccata i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64866065 1726 + 135191526 AGTCTCTTAATTTGCCAGGCACTGCAAGGACAACCCAGAT--------------AAAAACCATTCCACTCAAGGCATAGAAGAAAGAATGAGGTTTCATTAACCAGTACTGTATGTAAAATAAAATGAAGTAAAACAATGATCACAAAAGAGACATA--TGAAACAAACTATTTATTAGAAAAATTTGGCTAAGAATCTGGATATAGGGAGGTACAACCAAGTTTAGTCAAAGGAG-AAGTCCCCAATAAATTGGGAGGAAGCACCATTC---TAATAATTATGAATG---TTATTGAAGATAGCTTTCAAAGACATAAAC--ATTGGATT---------------------------------------------------------------TGGGAAAAGGAAAATAAACTTCTGGGTGGCAAaata---agttctaaa-----att-----------taattattgagaacttca--------cattaaaaattatcactttacatataccatctcatttaaccctcacggacccatgaagtgactaccatcaatattcccacattagagataagaactctaaggcacagagaaatgaagtcatttgttccacac------agctaTGCCTCCAGGAGTCCATTT-AGCACTCTCACATTCTCCCCTACCTACAAAG------------------CAACTGTGGAGTTGTTATGAGGATACCCTTCACTCATCCAGGATTTCTGAAGAAAGTGCCTGCATTATGCAATTTTATTATTTT--------CCATATTTTCATAAAGGCAATATACCTCTAATTTCCAGAGCTTTAAAAA-------AAGAAATTCACAAAAATTCACAAGTCAGAGAAAGTTTTTTTCTCAAAA-TAGCCCAGTATTTTAG-AACTGTATATCTGATTGTTCTCTATGTCTGTGGCAGGACCCGCAGTGGAGTGCAGCCTCTAGCTGGAAGCAGTGGCTCTGTGTAGGTGGGCCACCAGT----------GGGGG-----CTGCCTC---TCCAT-CGCATGGCATATG----------------GCC--------AGACAACATTCATATATGCAGAGTAGGCTGCT----AGCAAC------------ACAGAGTCATTGAAAGAGTCTCAGTGATTGCAACATCTGCTATTTTCTTGCAGAGAAACTTCCACCTCCACCTGGAGAGTGTACTTTCGAGCAAGATGAATGTACATTTACTCAGGAGAAAAGAAACCGGAGTAGCTGGCACAGGAGGAGGGGAGAAACTCCCACTTCCTACACAGGACCAAAGGGAGATCACACTACTGGGGTAGGTGAGTTATGCCACGTGGTGCTGTTTCCTAAGGAAAGCTTCTAAAATAGCATTCTA-GGAATCATTTACTGCATTTTGAAATATGCAAAATTATGTCTTGTGTCTAGAATGAAATGCACTTGTGATTCTACACACACAGGATGATTCA----ATATGGGCAC-TGAATA--TCATCCTTTCTGTTTATTACATTGCTT-ATGTACATTGCTGCAGCAAGGCAAGGATCTAACAGGGCTTACAAAGTTCTGCACACAAA--------GAATAGAAGTAAGTT-AAAGGTCAA--AGAGAGGGACAA-AGTAGGGG-----AAAAAAATGGTAATCTAAATTGGAGCCAGGGCCGAGGCCTAATATACAAAATATATTGGCAGAC----------AAAGGAAGAGGCA------TACAGGTT--TGACTCCAAGCTTTC-AGTAGCCAAAACTCATCTGTAAAACATGATTC-------------------AC----------------AGAATgagcagtccacgtgggtgggctataggcaatgatggggtgcattttctgtagaaaatgtataaactgcaataaaacagagtaagagttcatctacttcatattaccaacatgta---------------------tcagcaattgtaaacattgtcagtgacaaaataTGTCCCGCAggccatg i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57905973 1703 - 122973662 AGTCCCTTAATTTGCCAGGCACTGCAAGGACAACCCAGAT--------------AACAATCGTTCCACTCAAGGCATAGAAGAAAGAATGAGGTTTCATTAACTAGTACTGTATGTAAAATAAAATGAAGTAAAACAATGATCACAAAAGAGACATA--TGAAACAAGCTACTTATTAGGAAAATTT-GCCAAGAATCTAGATATACGGAGGTACAACCAAGTTTAGTCGAAGGAG-AAGTCCCCAATAAATTGGGAGGAAGCACCATTC---TAATAATTATGAATG---TTACTGAAGATAGCATTGAAAGACATAAAC--ATTGGATT---------------------------------------------------------------TGGGAAAAGGAAAATAAACCTCTGGGTGGCAAaata---agttctaaa-----att-----------taattattgagaacttca--------cattcaaaattattactttacatacaccatctcatttaatcctcatagaaccgtgaaatgactaccatcaatattcccacattacagataagaactctaaggcacagagaaatgaagtcatttgttccacac------agctaTGCCTCCAGGAGTCTATTT-AGCACTCTCACATTATCCCCCACCCACAAAG------------------CAACCGTGGAGTTGCTATGAGGCTACCCTTCACTCATCCAGGATTTCTGAAGAAAGTGCCTGCATTATGCAGTTTTATTATTTT--------CCATATTTTCGTAAAGGCAATATACCTCAAATTTCCAGAGCTTTATAAA-------AAGAAATTCACAAAAATTCACAAGTCAGAGAAAGTTTTTTTCTCAAAG-TAGCCCAGTATTTTAG-ATCTGTATATCTGATTGTTCTCTACGTCTGTGGCAGGACCTGCAGTGGAGTGCAGCCTCTAGCTGGAAGCAGTGGCTCCGTGTAGGTGGGCCACCAGT----------GGGGG-----CTGCCTC---TCCAT-CGCATGGCATATG----------------GCC--------AGACAACATTCATACATGCAAAGTGGGCTGCT----AGCAAC------------ACAGAGTCATTGAAAGAGTCTCAGCGATTGCAACATCTGCTATTTTCTTGCAGAGAAACTTCCACCTCCACCTGGAGAGTGTACTTTCGAGCAAGATGAATGTACATTTACTCAGGAGAAAAGAAACCGGAGCAGCTGGCACAGGAGGAGGGGAGAAACTCCCACTTCCTACACAGGACCAAAGGGAGATCACACTACTGGGGTAGGTGAGTTACGCCACATGGTGCTGTTTCCTAAGGAAAGCTTCTAAAATAGCATTCTA-GGAATCGTTTACTGCATTTTGAGATGTGCAAAATTATGTCTTGTGTCTAGAATGAAATGCACTTGTGATTCTACACACACAAGATGATTCA----ATATGGGCAT-TGAATA--TCATCCTTTCTGTTTATTGCATTGCTT-ATGTACATTGCTGCA-----ACAAGGATCTAACAGGGCTTACAAAGTTATGCACACAAA--------AAATAGAAGTATGTTAAAACGTCAA--AGA------------------------AAAAAATGGTAATCTAAATTGGAGCCAGGGCCGAGGCCTAATATACAAAATATATTGGTAGAC----------AAAGGAAGAGGTA------TACAGGTT--TGAGTCCAAGCTTTC-AGTAGCCAAAACTCATCTGTAAAACATGATTC-------------------AC----------------AGAATCAGCAGTCCACGTGGGTGggctgtaggcaataatggggtgcattttctgtagaaaatgtacaaactgcaataaaacagagtaagaggtgatctacttcatattaccaacatgta---------------------tcagcaattgtaaacattgtcagtgacaaaatGTGTCCCGTAggccatg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79835857 1692 + 112192347 AGTCCCTTGATTTGCCAGGCACTGCAAGGACAACCCAGGT--------------AAAAATTGTTCCACTCAAGGCATAG----AAGAATGAGGTTTCATTAACTAGTACTGTATGTAAAATAAAATGAAGTAAAACAATGATCACAAAAGAGACATA--TGAAACAAGCCATTTATTAGAAAAATTT-GCTAAGAATCTGGATGTAGGGAGGTACAACCAAGTTTAGTCA---GAG-AAGTCCCCAATAAATTGGGAGGAAGCACCATTC---TAATAATTATGAACG----TATTGGAGATAGCATTCAAAGACATAAAC--ATTGGATT---------------------------------------------------------------TGGGAAAAGGAAAATAAACCTCTGGGTGGCAAaata---agttctaaa-----att-----------tgattattgagaacgtca--------cattcaaaattatcgctttacacaaaccatctcatttaatcctcacagacctatgaagtgactaccatcaatattcccacattacagataagaactctaaggcacagagaaatgaagtcatttgttccacac------agctaTGCCTCCAGGAGTCCATTT-AGCACTCTCACATTCTCCCCCACCTCCAAAG------------------CAACCATGGAGTTGTTATGAGGATACCCTTCACTCATCCAGGATTTCTGAAGAAAGTGCCTGCATTATGCCATTTTATTATTTT--------CCATATTTTCATGAAGGCAATATACCTCTAATTTCCAGAGCTTTATGAA-------AAGAAATTCACACAAATTCACAAGTCAGAGAAAG-TTTTTTCTCAAAG-TAGCCCAGTATTTTAG-ATCTGTGTATCTGATTGTTCTTTATGTCTGTGGTAGGACCCACAGTGGAGTGCAGGCTCTAACTGGAAGCAATGGCTCCGTGTAGGTGGGCTGCCAGT----------GGGGG-----CT-CCTC---TCCGT-CGCATGGCATATG----------------GCC--------AGACAACATTCATACATGCAGAGTGGGCTGCT----AGCAAC------------ACAGAGTCACTGAAAGAGTCTCAGCAATTCCAACACCTGCTATTTTCTTGCAGAGAAACTTCCACCACCACCTGGAGAGTGTACTTTTGAGCAAGATGAATGTACATTTACTCAGGAGAAAAGAAACCGGAGCAGCTGGCACAGGAGGAGGGGAGAAACTCCCACTTCCTACACAGGACCAAAGGGAGATCACACTACTGGGGTAGGTGAGTTACGCCACGTGGTGCTGTTTCCTAAGGAAAGTTTCTAAAATAGCCTTCTA-GGAATCATTTACTGCATTTTGAAATGTATAAAATTATGTCTTGTGTCTAGAATGAAATGCACTTGTGATTCTACACACACAGGATGATTCG----ATATGTGCAT-TGAATA--TCATCCTTTCTGTTTAT--------------tacattgctgca-----acaaggatctaacggggcttacaaagttatgcacacaaa--------gaataaaa----gttaaaaggtcaa--agtgagggacaa-agtaggg-------gaaaaatggtaatctaaattggagccagggccgaggcctaatatacaaaatgtattggcagac----------aaaggaagaggca------tacaggtt--tgactctaagctttc-agtagccaaAATTCATCTGTAAAACATGATTC-------------------AC----------------AGAATgagcagtctacgtgggtgggttgtaggcaatgatggggtgcattttctgtagaaaacatacaaatcgcaataaaacaaagtaagagttgatctgcttcatattaccaacatgta---------------------tcagcaattgtaaacactgtcagtgacaaaatatgtcctGTAggccatg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80915298 1692 + 112612857 AGTCCCTTGATTTGCCAGGCACTGCAAGGACAACCCAGGT--------------AAAAATCGTTCCACTCAAGGCATAG----AAGAATGAGGTTTCATTAACTAGTACTGTATGTAAAATAAAATGAAGTAAAACAATGATCACAAAAGAGACATA--TGAAACAAGCCATTTATTAGAAAAATTT-GCTAAGAATCTGGATGTAGGGAGGTACAACAAAGTTTAGTCA---GAG-AAGTCCCCAATAAATTGGGAGGAAGCACCATTC---TAATAATTATGAACG----TATTGGAGATAGCATTCAAAGACATAAAC--ATTGGATT---------------------------------------------------------------TGGGAAAAGGAAAATAAACCTCTGGGTGGCAAaata---agttctaaa-----att-----------tgattattgagaacgtca--------cattcaaaattatcgctttacacaaaccatctcatttaatcctcacagacctatgaagtgactaccatcaatattcccacattacagataagaactctaaggcacagagaaatgaagtcatttgttccacac------agctaTGCCTCCAGGAGTCCATTT-AGCACTCTCACATTCTCCCCCACCTCCAAAG------------------CAACCATGGAGTTGTTATGAGGATACCCTTCACTCATCCAGGATTTCTGAAGAAAGTGCCTGCATTATGCCATTTTATTATTTT--------CCATATTTTCATGAAGGCAATATACCTCTAATTTCCAGAGCTTTATGAA-------AAGAAATTCACACAAATTCACAAGTCAGAGAAAG-TTTTTTCTCAAAG-TAGCCCAGTATTTTAG-ATCTGTGTATCTGATTGTTCTTTATGTATGTGGTAGGACCCACAGTGGAGTGCAGGCTCTAACTGGAAGCAATGGCTCCGTGTAGGTGGGCTGTCAGT----------GGGGG-----CT-CCTC---TCCGT-CGCATGGCATATG----------------GCC--------AGACAACATTCATACATGCAGAGTGGGCTGCT----AGCAAC------------ACAGAGTCACTGAAAGAGTCTCAGCAATTCCAACACCTGCTATTTTCTTGCAGAGAAACTTCCACCACCACCTGGAGAGTGTACTTTTGAGCAAGATGAATGTACATTTACTCAGGAGAAAAGAAACCGGAGCAGCTGGCACAGGAGGAGGGGAGAAACTCCCACTTCCTACACAGGACCAAAGGGAGATCACACTACTGGGGTAGGTGAGTTACGCCACGTGGTGCTGTTTCCTAAGGAAAGTTTCTAAAATAGCATTCTA-GGAATCATTTACTGCATTTTGAAATGTATAAAATTATGTCTTGTGTCTAGAATGAAATGCACTTGTGATTCTACACACACAGGATGATTCG----ATATGTGCAT-TGAATA--TCATCCTTTCTGTTTAT--------------TACATTGCTGCA-----ACAAGGATCTAACGGGGCTTACAAAGTTATGCACACAAA--------GAATAGAA----GTTAAAAGGTCAA--AGTGAGGGACAA-AGTAGGG-------GAAAAATGGTAATCTAAATTGGAGCCAGGGCCGAGGCCTAATATACAAAATGTATTGGTAGAC----------AAAGGAAGAGGCA------TACAGGTT--TGACTCTAAGCTTTC-AGTAGCCAAAATTCATCTGTAAAACATGATTC-------------------AC----------------AGAATGAGCAGTCTACGTGGGTGggttgtaggcaatgatggggtgcattttctgtagaaaacatacaaatcgcaataaaacaaagtaagagttgatctgcttcatattaccaacatgta---------------------tcagcaattgtaaacattgtcagtgacaaaatatgtcctGTAggccatg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76965062 1691 + 107442819 AGTCCCTTGATTTGCCAGGCACTGCAAGGACAATCCAGGT--------------AAAAATCGTTCCACTCAAGGCATAG----AAGAATGAGGTTTCATTAACTAGTactgtatgtaaaataaaatcaagtaaaacAATGATCACAAAAGAGACATA--TGAAACAAGccatttattagaaaaattt-GCTAAGAATCTGGATGTAGGGAGGTACAACCAAGTTTAGTCA---GAG-AAGTCCCCAATAAATTGGGAGGAAGTACCATTC---TAATAATTATGAACG----TATTGGAGATAGCATTCAAAGACATAAAC--ATTGGAtt---------------------------------------------------------------tgggaaaaggaaaataaacctcT-GGTGGCAAAATA---AGTTCTAAA-----ATT-----------TGATTATTGAGAACATCA--------CATTCAAAATTATCGCTTTACACataccatctcatttaatcctcacagacCCATGAAGTGACTACCATCAATATTCCCACATTACAGATAAGAACTCTAAGGCACAGAGAAATGAAGTCATTTGTTCCACAC------AGCTATGCCTCCAGGAGTCCATTT-AGCACTCTCACATTCTCCCCCACCTCCAAAG------------------CAACCGTGGAGTTGTTATGAGGATACCCTTCACTCATCCAGGATTTCTGAAGAAAGTGCCTGCattatgccattttattatttt--------ccatattttcatgAAGGCAATATACCTCTAATTTCCAGAGCTTTATGAA-------AAGAAATTCACACAAATTCACAAGTCAGAGAAAG-TTTTTTCTCAAAG-TAGCCCAGTATTTTAG-ATCTGTATATCTGATGGTTCTCTACGTCTATGGTA-GACCCGCAGTGGAGTGCAGGCTCTAGCCGGAAGCAATGGCTCCGTGTAGGTGGGCTGCCAGT----------GGGGG-----CTGCCTC---TCCAT-CACATGGCATATG----------------GCC--------AGACAACATTCATACATGCAGAGTGGGCTGCT----AGCAAC------------ACAGAGTCACTGAAGGAGTCTCAGCAATTCCAACACCTGCTATTTTCTTGCAGAGAAACTTCCACCACCACCTGGAGAGTGTACTTTCGAGCAAGATGAATGTACATTTACTCAGGAGAAAAGAAACCGGAGCAGCTGGCACAGGAGGAGGGGAGAAACTCCCACTTCCTACACAGGACCAAAGGGAGATCACACTACTGGGGTAGGTGAGTTACGCCACGTGGTGCTGTTTCCTAAGGAAAGTTTCTAAAATAGCATTCTA-GGAATCATTTACtgcattttgaaatgtataaaattatgtcTTGTGTCTAGAATGAAATGCACTTGTGATTCTACACACACAGGATGATTCG----ATATGTGCAT-TGAATA--TCATCCTTTCTGTTTAT--------------TACATTGCTGCA-----ACAAGGATGTAACAGGGCTTACAAAGTTATGCACACAAA--------GAATAGAA----GTTAAAAGGTCAA--AGAGAGGGACAA-AGTAGGG-------GAAAAATGGTAATCTAAATTGGAGCCAGGGCCGAGGCCTAATATACAAAATGTATTGGTAGAC----------AAAGGAAGAGGCA------TACAGGTT--TGACTCTAAGCTTTC-AGTAGCCAAAGTTCATCTGTAAAACATGATTC-------------------AC----------------AGAATGAGCAGTCTACGTGGGTGGGTTGTAGGCAATGATGGGGTGCATTTTCTGTAGAAAACATACAAATTGCAATAAAACAAAGTAAGAGTTGATCTGCTTCATATTACCAACACGTA---------------------TCAGCAATTGTAAACATTGTCAGTGACAAAATATGTCCTgtaggccatg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81229178 1695 + 108555830 AGTCCCTTGATTTGCCAGGCACTGTAAGGACAACCCAGGT--------------AAAAATCGTTCCACTCAAGGCATAG----AAGAATGAGGTTTCATTAACTAGTACTGTATGTAAAATAAAATGAAGTAAAACAATGATCACAAAAGAGACATA--TGAAACAAGCTATTTATTAGAAAAATTT-GCTAAGAATCTGGATGTAGGGAGGTACAACCAAGTTTAGTCA---GAG-AAGTCCCCAATAAATTGGGAGGAAGCACCATTC---TCATAATTATGAATG----TATTGGAGATAGCATTCAAAGACATAAAC--ATTGGATT---------------------------------------------------------------TGGGAAAAGGAAAATAAACCTCTGGGTGGCAAaata---agttctaaa-----att-----------tgattgttgagaacatca--------cattcaaaattatcgctttacacataccatctcatttaatcctcacagacccatgaagtgagtaccatcagtattcccacattacagataagacctctaaggcacagagaaatgaagtcatttgttccgcac------agctaTGCCTCCAGGAGTCCATTT-AGCACTCTCACATTCTCCCCCACCTCCAAAG------------------CAACCGTGGAGTTGTTATGAGGATACCCTTCACTCATCCAGGATTTCTGAAGAAAGTGCCTGCATTATGCCATTTTATTATTTT--------CCATATTTTCATGAAGGCAATATACCTCTAATTTCCAGAGCTTTATGAA-------AAGAAATTCACACAAATTCACAAGTCAGAGAAAG-TTTTTTCTCAAAG-TAGCCCAGTATTTTAG-ATCTGTGTATCTGATTGTTCTTTATGTCTGTGGTAGGACCCACAGTGGAGTGCAGGCTCTAGCTGGAAGCAATGGCTCCGTGTAGGTGGGCTGCCAGT----------GCGGG-----CTGCCTC---TCCAT-GGCATGGCATATG----------------GCC--------AGACAACATTCATACATGCAGAGTGGGCTGCT----AGCAAC------------ACAGAGTCACTGAAAGAGTCTCAGCAATTCCAACACCTGCTATTTTCTTGCAGAGAAACTTCCACCACCACCTGGAGAGTGTACTTTCGAGCAAGATGAATGTACATTTACTCAGGAGAAAAGAAACAGGAGCAGCTGGCACAGGAGGAGGGGAGAAACTCCCACTTCCTACACAGGACCAAAGGGAGATCACACTACTGGGGTAGGTGAGTTATGCCACGTGGTGCTGCTTCCTAAGGAAAGTTTCTAAAATAGCATTCTA-GGAATCATTTATTGCATTTTGAAATGTATAAAATTATGTCTTGTGTCTAGAATGAAATGCACTTGTGATTCTACACACACAGGATGATTCG----ATATGTGCAT-TGAATC--TCATCCTTTCTGTTTATTACATTGCTT-ATGTACATTGCTGCA-----ACAAGGATCTAACAGTGCTTACAAAGTTATGCACACAAA--------GAATAGAA----GTTAAAAGGTCAA--AGACAGGGACAA-AGTAGGG-------GAAAAATGGTAATCTAAATTGGAGCCAGGGCCGAGGCCTAATATTCAAAATGTATTGGTAGAC----------AAAGGAAGAGGCA------TACAGGTT--TGACTCTAAGCTTTT-AGTAGCCAAAACTCATCTGTAAAACATGATT----------------------------------------------CAGTCTACGTGGGTGggttataggcaatgatggggtgcattttctgtagaaaacgtacaaattgcaataaaacagagtaacagttgatctgcttcatattaccaacatgta---------------------tcagcaattgtaaacattgtcagtgacaaaatatgtcctATAggccatg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111465713 1772 - 210400635 AGTCCGTTGATTTGCCAGGCACTGCAAGGACAACCCAGAT--------------AAAAATCATTCCACTCAAGG-ATAGAAAAAAGAATGAGCCTTCATTAACTAGTACTGTATGTGAAATA---------AAAACAACGATCACACAAGAGGCATA--TGAAACAAGCTGTTTATTAGAAAAATTT-GCTAAGAATCTGGATGTAGGGAGGTATAACCAAGTTTAGTCAAAAGAG-AAGTCCCCAATAAATTGGGAAGAAGCACCACTCTAATAATAATTATGAATG---TTATTGAAGACAGGATTCAAAGACAGAGAC--ATTGGATT---------------------------------------------------------------TGGGAAATGGAAAATAAAGCTCTGGATGGCAAAATA---AGTTCTAAA-----ATT-----------AAAttattgagaacttta--------tattcaaaattatcactttatgtataccatctcatttaatcctcacagacccatgaagtgactaccattaatattcccacattacagataagaactgtaaggcacagagaaatgaagtcatttgttccacgt------agctaTGCCTCCAGAAGTCCATTTAAGCACTCTCACATTCTCCTCCACCTCCAAAGTTGTTACGGTGTATCCTTCACCTGTGGAGTTGTTATGAGGATACCCTTCACTCATCTAGGATTTCTGAAGAAAGCGCCTGCATTATATAA-TTTATTATTTT--------CCATATTTTCATAAAGGCAATATACCTCTAAATTCTGGAGTGATAGAAA-------AAGAAATTCACACAAATTCACAAGTCAGAGAAAG-TTTTTTCTCAAAG-TATTCTATTATTTTAG-ATCTATATCTCTGATTATTCTCTGTGTCTGTGGCAGGACCCACAGTGGAGTGCAGCCTCCAGCTGGAAGCAATGGCTTTGTGTAGGTGGGCCACCAGT----------GGGGT-----TTGCCTC---TCCAT-CACATGCCATATGTGGGCTGCCATCATATGCCATATGTGAAGACAGCATTCATACATGCATAGTGGGCTGCT----AGCA--------------ACAGAGTCATTGAGAGTGTCACAGCAATTGCAACACCTACCATTTCCTTGCAGAGAAACTTCTACCTCCACCTGGAGAGTGTACTTTCGAGCAAGATGAATGTGCATTTACTCAAGAGAAAAGAAACCGGAGCAGCTGGCACAGGAGGAGAGGAGAAACTCCCACTTCCTACACAGGACCAAAGGGAGATCACACTACTGGGGTAGGTGAGTTATGCCACGTGGTACAGTTTCCTAAGGAAAGCTTCTAAAATAGCATTCTA-TGAATCATTTACTGCATTTTGAAATGTGCGAAA-TATGTCTTGTGTCTGAAATGAAATGCACTTGGGATTCTACACACACAGGATGATTCA----ATATGTGCAC-TGAATG--TCATTCTTTCTGTTTATTACATTGCTT-ATGTTCATTGCTGCA-----ACAAGGATCTAACAGGGCTTACTAAGATACGCACACAAA---AATTTAATTAGAAGTAAGTTTAAAGGTCAA--AGAGAGGGACAA-ATTGGGGA-----GAAAAAGTGGTAATCTAAATTGGAGCCAGGGCCAAGGCCTAATATACAAAATGTATTAGGAGAC----------A----AAGAGGCA------TACAGATT--TGACTCCAAACTTTC-AGTTGCTAAAACTTATCTGTGAAACATGATTCATAGCATCCTTAGGAAAAAAC----------------AGAATgagcagtccacttgggtggggtataggcaatgatggggtgcattttctgtagaaaacatggaaactttgataaaacagagtaaaagttgatctgcttcatattaccaacatgta---------------------tcagcaattgtaaacattgtcagtgacaaaatGTGTCTTATAggccatg i calJac3.chr1 C 0 C 0 s mm10.chr19 38099526 1670 - 61431566 AGACTCCTTGTTTTCTGAGCCTTTGAAGGACAGTAACAAT--------------AAGAATATCTACATTCAAGGCACAGAACAGGGAATGAGGCCCCAGTAACTAGCACTGTATAGAAAAT-----------------TGAATACAAGAGAAACAAA--CAAAAAAAATGATCTTT---AAATTTTT-ACTAAGAATATGGATGTAGGGAGGCATAACAAAGTTGAGACAAAGGAGAAAATCACTGCTGAGTTGAGAGACAGCATTACTCTGGTGGTAATAACGACTGCTGTTAGTAAAGATGCCATTCAAAGACAAATATTGACTGGGTTGTACTGCTTGCCTAGGGTGTGCCGAGCCCTGGTTTTATCCTCAATATAAAACACAATCATGTCTGGGAGTGGAAAGAGA---CTTTTGTTAACAAAATA-ACAGTTCttaatatttttt-----------ttactaataataattgtattattatGtatcctaaatt----cttcacacgcattgtcttatttaatcctcgcaatcctatgaagtggatgccatcaatatccccaca-tacaagtatgaacactgaggcacagaaaAAAGACATCACCTGAGCTGCAC------AG-----------------------------------TTCTGCTCCTCCTCCAGAG------------------GAGACATCGAGCTGATCTGAGAATATCCTTCATTCACCCGGGATTTTTGAAGAAAGCTCTTACATTATACAACTCtttaattttttttttaattttattttCATAGAGGCAGGGTATCTACAGTTTTCAGAGTTCTGT-------------AATTCCACTCGAATTCCCGAGTGAGGGAAGT-GTCTTGCTCAAAG-TAATCCAATATTTCAG-ATCTAGATCTTTGAT-----TCTGTACCACTGATAGAACCCA---TGAAGCATAGAGTC--ACTGGAGG-------TCAGGCTGGGTAGCCCACCTGT----------GGGGGTGGGTCTGCCTC---TCCATAGGCTTGACATATG----------------GCC--------AGGCACCTCTCAGACATGCAAAGCAGGCTGCT----AGGAGCCGTGAGAGCATTACATATTCATCGAC--TGTCTCAGTAATTGCAACGCCTGCTGTTTCCTTGCAGCAAGACTTCCACCTCCACCTGGAGAATGCACTTTTGATCAAGATGAATGTGCGTTTACACAGGAGAAAAGGAACCGAAGCAGCTGGCACAGGGGAAGGGGAGAAACGCCCACCTCCTACACAGGACCCAAGGGAGATCACACTACTGGGGTAGGTGAGTTATGCCACATGGTGCTGTTTCCTAAGAACA-----TAACTTAGCATACTA-GTGGGCATTTACTGCGTTCTGA-ATGTGCAGATTCATGTCTTGTGACTAAAATG--ATGTACATGATATTCTACACAGTCAATAT--TTTA----ATAGGTTCATAGGAAAA--GCATAT------TTTATAACACCTCTTAATGCGTATT-----------ACAAAGGTAATCTAGGACT----AGGTTTT----AAAAA--------AAACTGAA---------------------AGAGGAACAGTAGTGGAGG------CAAAGAAGAAAATCAAAATGGAa------gctgaggcttagtata-gaaatgctcaggcaatcccagcacttgggaggcagaggca------gtcagatttctgagttcgag--gcc-agcggcc---------------agcctggtct-------------------ac----------------aaagtgagt--tctaggacagccag-----ggctatacagagaaaccctgtctcgaaaaac-----------caaaaAAAAAAAAGAAATGTTCA-----GGCAGATGGGGAACATGCAGATAAGTTCAACTCCGTGTTTTCTATAGCTGAAA-------CAGAGAGAAAATTCATCT--------GTG i mm10.chr19 I 101 C 0 s canFam3.chr1 35345510 1731 - 122678785 AGCCTCTTGATTTGTGAGGCACTGCAAGGATAACACAAAGAAAAGAAAGATAAAAAAAATCTCTACAGTCGAGGCATAG-----------------------CTTGTACCGTATATAAAATAAAATGGAGTAAAATAATTATTATGCAAGAGATGTAATAAAAACAGGTGGTAGATTAGAGAAATTT-GCTAAGAATCTCAATGCAGAAAGGTACAACCATGTTCAGGCA---AAG-AAGTTTCCAGTAAG-TGGGAGGTGGCACCATTC---TCAT-TTTAAGAATC--------------ATCATCCAAAGACATAAAT--ACTTGTTT---------------------------------------------------------------TTGGAAATGGAAAATAAGGCTCCAGGTGACACAACACGAAGCCctaat-----atttatttagctactatttattgagaacttca--------tgttctaaat----actttatgtgcatcatctcactgaa----cacagtcccgtgaggt--------------------------aggtgagaatactgaagctcagagaaagtcactcacttgctcCACGCATGTTAAACTGTGTCTCCAGAAGCACAGTG-AGCCTTTGCATGTTCTCTGCTTCCCTCCAGG------------------CAACTATAGAGTTGTTCTAAGGATTTCCTTCACTTATCCTGGATTTCTGAAGAAA---CCTATTCTAGGCAATTTTATTATTTT--------CCATATTTCCATGAAGGCAATTTCCCTCCAATTTTCAGAGATTTGTAAGCTCCTTCGGGCAATT-----AAACTCACCAATCAGAGGAGGTTTCTTTCTCGAAGTTATCCCGACACCTTGGAATCTAGATTTCTGATTTTTCTCCACTGCTATGGCAGAACCCACAGTAGAATCCAGGCTCTAGCTGGGGGCAAGAGGTTGGCATAGGTGGGTGGCCAGCTGGGGGGTAGGGAGG-----CTGCCTCTGTTCAAG-CTCA-GGCGTATG----------------GCC--------AGGTGACATCCATACATGCAGGGTGGGCTTCTTCTAAGCCACGGGAT-------GCATTTTCTTTGAAAAGGCCTTAACAATTACAACACCTGCTGTTTCCTTACAGAGAGGCTTCCACCTCCACCTGGAGAGTGTACTTTTGAACAAGATGAATGTGCATTTACTCAGGAGAGAAGAAACCGGAGCAGCTGGCATAGGAGGAGAGGAGAAACTCCCACCTCCTACACGGGACCAAAGGGAGATCACACTACTGGGGTAGGTGAGTTATGCCACATGGTACTGTTTGCTAAGGAAA---CCTGACCGAGCTTTCTAGGGGGTCATTCACTGCATTTTGGAAGGCGCAAATTTATGTCCTGGGTCTAGAATGAGCTACACATGCGATTCGACACCCCTGGGATAGATCGTCAAATTTGTGCAT-TCAAGA--TTGTTCTTTCTGCTTAT-ACGTTGTTT-ATGTATCTTGC-GCA-----AAGAGGATTTAAATGGGCTTACAAAGATATGCACACAAAAATAATTTAATTAGAAGTGGGTTTAAAAATAAAAGAGAGAGGGACAG-CATGAAGGAAAAAAAAAAAGTAGTGATCTAAGCTGGAGCCAGCACTGAGGCCTCGAATGAAAAATGTGCTGGCAGAC----------AAGGGAGGGAACATTAGTGTGCGAGCT--TGACTCTACATTTTCTAGCAGCTGAAACAAAGATGAAAAACATGATTT-------------------ACTGTGTCCTTAGGCTAAAGAAgaagcactccaccaagg---ggtgtagaaaataagggggtgcattttctgcagaaaatatatgaaggacaatgaaatacactaaatgttgattt-------attatcaccatgtg----------------------cagcagttgtaaacaatgtcagtggtaatataccccATACAGAATA-- i canFam3.chr1 C 0 I 384 a score=350629.000000 s hg38.chr9_GL383541v1_alt 153191 109 + 171286 tgtggtggctcactcctgtaatcccagcactttgggaggc--caaggtgagaggattacttgagtctaggagttcaagaccagcctagacaacatagtgagactctatctt s panTro4.chr9 68712618 109 + 137840987 tgtggtggctcactcctataatcccagcactttgggaggc--caaggtgagaggattacttgagtctaggagttcaagaccagcctagacaacatagtgagactctatctt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64867791 109 + 135191526 tgtggtggctcactcctataatcccagcactttgggaggc--caaggtgagaggattacttgagtctaggagttcaagaccagcctagacaacatagtgagactctatctc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57907676 109 - 122973662 tgtggtggctcactcctataatcccagcactttgggaggc--caaggtgagaggattacttgagcccaggagttcaagaccagcctagtcaacatagtgagactctatctt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79837549 109 + 112192347 tgtggtggctcactcctataatcccagcactttgggaggc--caaggtgagaggattacttgagctcgggagttcaagaccagcctagacaacatagtgagactctatctc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80916990 109 + 112612857 tgtggtggctcactcctataatcccagcactttgggaggc--caaggtgagaggattacttgagctcgggagttcaagaccagcctagacaacatagtgagactctatctc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76966753 109 + 107442819 tgtggtggctcactcctataatcccagcactttgggaggc--caaggtgagaggattacttgagttcgggagttcaagaccagcctagacaacatagtgagactctatctc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81230873 109 + 108555830 tgtggtggctcactcctataatcccagcactttgggaggc--caaggtgagaggattacttgagcccgggagttcaagaccagcctagacaacatagtgagattctatctc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111467485 109 - 210400635 cgtggtggctcactcctataatcccagcactttggaaggt--cgaggtgagaggactacttgagcctaggagttcaagaccagcctagaaaacatagtgagaccctatctg i calJac3.chr1 C 0 C 0 s mm10.chr19 38101196 76 - 61431566 AATCGTGAGTCACTGTT-------------CTTGGGATGAAGCAAGGAGAGCAGATAGCTGGAG------------------GTCTAGGGGGCACAAt----ctctctctc i mm10.chr19 C 0 I 58 e canFam3.chr1 35347241 384 - 122678785 I a score=219816.000000 s hg38.chr9_GL383541v1_alt 153300 80 + 171286 gacaa-------ttttttttttaatttagccagctgtggtggtgtgcacctgtggtcacagctacttggaaggctgaggcaggagga s panTro4.chr9 68712727 79 + 137840987 gacaa--------tttttttttaatttagccagctgtggtggtgtgcccctgtggtcacagctacttggaaggctgaggcaggagga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64867900 87 + 135191526 gacaacatttttttttttttttaatttagccagttgtggtggtgtgcacctgtcatcacagctacttggaaggctgaggcaagagga i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57907785 81 - 122973662 gaaaa------ttttttttttaaatttagccagttgtggtggcgtgcacctgtggtcacagctacttggaacgctgaggcagaagga i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79837658 84 + 112192347 gacaa---atttttttttttttaatttagccagttgtggtggcgtgaacctgtggtcacagctacttggaaggctgaggcaggagga i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80917099 83 + 112612857 aacaa---a-ttttttttttttaatttagccagttgtggtggcgtgaacctgtggtcacagctacttggaaggctgaggcaggagga i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76966862 84 + 107442819 aacaa---atttttttttttttaatttagccagttgtggtggcatgcacctgtggtcacagctacttggaaggctgaggcaggagga i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81230982 83 + 108555830 agcga---t-ttttctttttttaatttagccagttgtggtggcgtgcacctgtggtcacagctacttggaaggttgaggcgggagga i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111467594 82 - 210400635 gacaa-----aattttttttaaattttagccagttgtggtggcatgcacctgtggtcacagctactcagaaggctgaggcaggagga i calJac3.chr1 C 0 C 0 e mm10.chr19 38101272 58 - 61431566 I e canFam3.chr1 35347241 384 - 122678785 I a score=174222.000000 s hg38.chr9_GL383541v1_alt 153380 56 + 171286 ttgcttgagc---ccaggaggtcagggctacagtgagccatgttcatgccattgcac-cc s panTro4.chr9 68712806 56 + 137840987 ttgcttgagc---ccaggaggtcagggctacagtgagccatgttcatgccattgcac-cc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64867987 56 + 135191526 ttgcttgagc---ccaggaggtcagggctacagtgagccatgttcatgccattgcac-cc i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57907866 56 - 122973662 ctgcttgagc---ccagaaggtcagggctatagtgaaccatgttcatgccattgtac-cc i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79837742 55 + 112192347 ttgcttgagc---ccagga-gtcagggctacagtgagccatgttcatgccattgcac-cc i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80917182 55 + 112612857 atgcttgagc---ccagga-gtcagggctacagtgagccatgttcatgccattgcac-cc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76966946 55 + 107442819 ttgcttgagc---ccagga-gtcagggctacagtgagccatgttcatgccattgcac-cc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81231065 55 + 108555830 ttgcttgagc---ccagga-gtcagggctatagtgagccatgttcatgccattgcac-cc i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111467676 57 - 210400635 ttgctcgagc---ctgggaagtcaaggctacagtgagccatgttcatgccattgcactcc i calJac3.chr1 C 0 C 0 s mm10.chr19 38101330 46 - 61431566 ttgttcaggctggccaggaagtcagg-------------atcttcctgcctcagcat-cc i mm10.chr19 I 58 I 303 e canFam3.chr1 35347241 384 - 122678785 I a score=488693.000000 s hg38.chr9_GL383541v1_alt 153436 187 + 171286 agcttgggtgacagagcaaggccctgtctc--gaaaaa-aataaat----aataaattaaaaaGTACCTTCCATAGAATGGATCTTTCTCACTCACACCCCCATTCCATTTGGTATACTAACTGAataaaagcacaacacttggtccagagaagcagaactacccctgatactaagctcatagagatatttcct s panTro4.chr9 68712862 187 + 137840987 agcttgggtgacagagtaaggccctgtctc--gaaaaa-aataaat----aataaattaaaaaGTACCTTCCACAGAATGGATCTTTCTCACTCACACCCCCATTCCATTTGGTATACTAACTGAataaaagcacaacacttggtccagagaagcagaactacccctgatactaagctcatagagatatttcct i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64868043 189 + 135191526 agcttgggtgacagagcaaggccctgtcccaaaaaaaa-aaaaaaa----aaTTAATTAAAAAGTACCTTCCATAGAATGGATCTTTCTCACTCACACCCCCATTTCATTTGGTATACTAACTGAATAAaagcataacatttggtccagagaagcagaactacccctgacactaagctcatagagatatttcct i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57907922 187 - 122973662 cacttgggtgacagagcaaggccctgtctc--aaaaaa-aaataat----aataaattaaaaaGTACCTTCCATAGAATGGATCTTTCTCACTCACACCCCCATTTCATTTGGTATACTAACTGAataaaagcacaacacttggtccagagaagcagaactacccctgatactaaactcatagagatatttccg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79837797 184 + 112192347 agtttgggtgacagagcaaggccctgtctc--aaaaaaTAATGAAT----AATAAAT---AAAGTACCTTCCATAGAATGGATCTTTCTCACTCACACCCCCGTTTCATGTGGTATACCAACTGAATAAAAGCACAACACTTGGTCCAGAGAAGCAGAACTAC-CCCGATACTAAGCTCATAGAGATATTTCCT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80917237 172 + 112612857 agtttgggtgacagagcaaggccctgtctc--aaaaaaTAACGAA-------------------TACCTTCCATAGAATGGATCTTTCTCACTCACACCCCCGTTTCATGTGGTATACCAACTGAATAAAAGCACAACACTTGGTCCAGAGAAGCAGAACTAC-CCCGATACTAAGCTCATAGAGATATTTCCT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76967001 184 + 107442819 agcgtgggtgacagggcaaggccctgtttc--aaaaaataatgaat----aataaat---aaagtacCTTCCATAGAATGGATCTTTCTCACTCACACCCCCGTTTCATGTGGTATACCAACTGAATAAAAGCACAACACTTGGTCCAGAGAAGCAGAACTAC-CCCGATACTAAGCTCATAGAGATATTTCCT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81231120 189 + 108555830 agtttgggtgacagagcaaggccctgtctc--aaaaaaaaaTGAATAATAAATAAAT---AAAGTAACTTCCATAGAATGTATCTTTCTCACTCACACGCCCGTTTCATGTGGTATACCAACTGAataaaagcacaacacttggtctagagaagcagaactactcctgatactaagctcatagagatatttcct i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111467733 177 - 210400635 agcttgggcaacagagcaagtctctgtctc--aaaaca-a----------aacaaaacaaaaAATACATTCCATAGA----ATCTTTCTCACTGACACCCCTGTTTCATTTGGTATACCTACTGAATAAAAGCAGGGCACTTGGTCCAGAGAAGGAGAACTACCCCTGATACTAAGCTCCTAGAAATATTTCCT i calJac3.chr1 C 0 C 0 e mm10.chr19 38101376 303 - 61431566 I e canFam3.chr1 35347241 384 - 122678785 I a score=721024.000000 s hg38.chr9_GL383541v1_alt 153623 275 + 171286 catgaattctcctagagaaaccattatgATAGTAAATATGAGGGTAATTTGCATTGTGCTGTTTCTTATGGTCTAACTTgggatatttaatcttttggcttctctgggccacattg---gaagaagaattgtcttgggccacacataaaatacactaacgctaatgacagctgatgagctaaaaa-------------------aaattgc-aaaaaaaattctcataatgttttaagaaagtttacaaatttgtgttaggccatattcaaagctgttctgggccacatgcaacctgt s panTro4.chr9 68713049 275 + 137840987 catgaattctcctagagaaaccattatgATAGTAAATATGAGGGTAATTTGCATTGTGCTGTTTCTTATGGTCTAACTTgggatatttaatcttttggcttctctgggccacattg---gaagaagaattgtcttgggccacacataaaatacactaacgctaatgacagctgatgagctaaaaa-------------------aaattgc-aaaaaaaattctcataatgttttaagaaagtttacaaatttgtgttaggccatattcaaagctgttctgggccacatgcaacctgt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64868232 272 + 135191526 catgAATTCTCCTAGAGAAACCATTATGATAGTAAATATGAGGGTAATTTGCATTGTGCTGTTTCTTATGGTCTAACTCggggtattcaatctttcggcttctctgggccacattg------gaagaattgtattgggccacacataaaatacactaatgctaatgatagctgatgagctaaaaa-------------------aaattgc-aaaaaaaattctcataatgttttaagaaagtttacaaatttgtgttaggccatattcaaagctgttctgggccacatgcaacctgt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57908109 281 - 122973662 catgaattctcctagagaaaccattatgATAGTAAATATGAGGGTAATTTGCATTGTGCTGTTTCTTATGGTCTAACTCAgggtattcaatcttttgacttctctgggccacattggaagaagaagaattgtcttgggccacatacaaaatacactaacactaatgatagatgatgagctaaaaaaac----------------aaattgc-aaaaaaaattctcataatgttttaagaaagtttacaaatttctgttaggccatattcaaagctgttctgggccacatgcagcctgt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79837981 275 + 112192347 CATGAATTCTTCTAGAGAAACTATTATGATAGTAAATATGAGGGTAATTTGCATTGTGCTGTTTCTTATGGTCTAACTTggggtattcaatcttttggcttctctgggccacactg---gaagaagaattgtcttgggccacacataaaatacactaaaactaatgatagctgatgagctaaaaaaaa----------aaaaaaaaattga--aaaaaaattctc---atgttttaagaaagtttacaaatttgtgttaggccatattcaaagctgttctgggtcacatg-----tgt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80917409 284 + 112612857 CATGAATTCTTCTAGAGAAACTATTATGATAGTAAATATGAGGGTAATTTGCATTGTGCTGTTTCTTATGGTCTAACTTggggtattcaatcttttggcttctctgggccacactg---gaagaagaattgtcttgggccacacataaaatacactaaaactaatgataactgatgagctaaaaaaaaaagaa-aaagaaaaaaaaattgc--aaaaaaattctc---atgttttaagaaagtttacaaatttgtgttaggccatattcaaagctgttctgggtcacatg-----tgt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76967185 275 + 107442819 CATGAATTCTTCTAGAGAAACCATTATGATAGTAAATATGAGGGTAATTTGCATTGTGCTGTTTCTTATGGTCTAACTTGGGGTattcaatcttttggcttctctgggccacactg---gaagaagaattgtcttgggccacacataaaatacactaatactaatgatagctgatgagctaaaaaata----------ataaaaaaattgc--aaaaatattctc---atgttttaagaaagcttacAAATTTGTGTTAGGCCATATTCAAAGCTGTTCTGGGTCACATG-----TGT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81231309 278 + 108555830 catgaattcttctagagaaaccattatgATAGTAAATATGAGGGTAATTTGCATTGTGCTGTTTCTTATGGTCTAACTCAgggtattcaatcttttggcttctctgggccacactg---gaagaagaattgtcttgggccacacataaaatacactaatactaatgatagctgatgagccaaaaaataaa--------aaaaaaaaattgc-aaaaaaaattctc---atgttttaagaaagtttacaaatttgtgttaggccatattcaaagctgttctgggtcacatg-----tgt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111467910 292 - 210400635 CAGGAATCCTTCTAGATAAACCATTGTGACATTAAATATGAGAGTAGTTTGCATCGTGCTGTTTTTTTTGGTCTAACTCggggtgtccaatcttttggcttc-ccgggccacattg---gaagaagaattgtcttgggccacacataaaatacactaacactaacaatagctgatgagctaaaaataaatgaataaataaaaattaaatgcaaaaaaaaaatttcataatgttttaagaaagtt--cagatttgtgctatgcaacattcaaaactgtccttggccacatgcagcctgc i calJac3.chr1 C 0 C 0 s canFam3.chr1 35347625 120 - 122678785 CATAAATCTTTCTAGATAAATAAAT---------AATACAAAGGTGAGTTAGCTACTgctatttcttatggcctacctcaagata-----------agccta------------tg---gaataa--------------cac-cagagagcaCCCTG----CAgtgtaacctgt---------------------------------------------------------------------------------------------------------------------------- i canFam3.chr1 I 384 C 0 e mm10.chr19 38101376 303 - 61431566 I a score=1306212.000000 s hg38.chr9_GL383541v1_alt 153898 394 + 171286 gggctgcagtttggacaagcttgATCTAACTCAAGATAAGCCTATG---GAATAATTACCACAGAACCACCTCCAG--TAAAACC----TGTTTAATTGGCTAAACATGGTAGAATGTAATAATGAACAGCTTTATTT---TTTCTAT-----CATTCTTCAAACA-----T------AAAGATCCTCTTTTCCCCATGCCTTGGCAAATCCCTTAGCTTCCCAGTCCTGTTGAGACATTAGAACAATTAGATATTCAGGTATGTCAAA-AGTCCAGTTCAAATCAAAACTTCCATTTCTCATTCAACTGAATCTTCTCTCTTTCCCTCAGCTTGGGCCTGACTCATAGT-TTGGAA---GGATAAAGGAAGAAACAGTCTATTTTTTCATTTTCTTTGTTTTACCTCCCCTCCTGCCCCTCATCTT s panTro4.chr9 68713324 394 + 137840987 gggctgcagtttggacaagcttgATCTAACTCAAGATAAGCCTATG---GAATAATTACCACAGAACCACCTCCAG--TAAAACC----TGTTTAATTGGCTAAACGTGGTAGAATGTAATAATGAACAGCTTTATTT---TTTCTAT-----CATTCTTCAAACA-----T------AAAGATCCTCTTTTCCCCATGCCTTGGCAAATCCCTTAGCTTCCCAGTCCTGTTGAGACATTAGAACAATTAGATATTCAGGTATGTCAAA-AGTCCAGTTCAAATCAAAACTTCCATTTCTCATTCAACTGAATCTTCTCTCTTTCCCTCAGCTTGGGCCTGACTCATAGT-TTGGAA---GGATAAAGGAAGAAACAGTCTATTTTTTCATTTTCTTTGTTTCACCTCCCCTCCTGCCCCTCATCTT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64868504 397 + 135191526 gggctgcagtttggacaagcttgATCTAACTCAGGATAAGCCTATG---GAATAATTACCACAGAACCACCTCCAG--TAAAACCTGTTTGTTTAATTGGCTAAACATGGTAGAATGTAATAATGAACAGCTTTATTT---TTTCTAT-----CATTCTTCAAACA-----T------AAAGATCCTC-TTTCCCCATGCCTTGGCAAATCCCTTAGCTTCCCAGTCCTGTTGAGATATTAGAACAATTAAATATTCAGGTATGCCAAA-AGTCCAGTTCAAATCAAAACTTCCATTTCTCATTCAACTGAATCTTCTCTCTTTCCCTCAGCTTGGGCCTGACTCATAGT-TTGGAA---GGATAAAGGAAGAAACCGTCTATTTTTTCATTTTCTTTGTTTCACCTCCCCTCCTGCCCCTCATCTT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57908390 397 - 122973662 gggctgcagtttggacaaacttgGTCTAACTCAAGATAAGCCTATG---GAATAA-TACCACAGAACCACCTCCAG--TAAaacctgtttgtttaattggctaaacatggtagaatgtaacaatgaacagcttaattt---tttctat-----cactcttcaaaca-----t------aaagatcctcttttccccatgccttggcaaatcccttagcttcccagtcctgttgagatattagaacaattagatattcaggtatgtcaga-agtccagttcaaatcaaaacttccatttctcattcaactgaatcttctctccttccctcagcttgggccTGACTCATAGT-TGGAAA---GGATAAAGGAAGAAACCATCTATTCTTTCATTTTCTTTGTTTCACCTCCTCTCCTGCCCCTCATCTT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79838256 394 + 112192347 gggctgcagtttggacaagcttgGTCTAACTCAAGATAAGCCTCTA---GAA----TACCACAGAACCACCTCCAG--TAAaacctgtttgtttaattggctaaacatggtagaatgtaataatgaacagctttattt---tttctat-----cactcttcaaaca-----t------aaagattctgtttttcccatgccttggcaaatcccttagcttcccagtcctgttgagatattagaacaattagatattcaggtatgtcaaa-agtccagttgaaatcaaaaattccatttttcattcaactgaatcttctctttttccctcagcttgggcctgactcgtaat-tgggaa---gaataaaggaagaaaccgtctattctttcattttctttgtttcatctcctctcctgcccctcatctt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80917693 394 + 112612857 gggctgcagtttggacaagcttgGTCTAACTCAAGATAAGCCTCTA---GAA----TACCACAGAACCACCTCCAG--TAAAACCTGTTTGTTTAATTGGCTAAACATGGTAGAATGTAATAATGAACAGCTTTATTT---TTTCTAT-----CACTCTTCAAACA-----T------AAAGATTCTCTTTTTCCCATGCCTTGGCAAATCCCTTAGCTTCCCAGTCCTGTTGAGATATTAGAACAATTAGATATTCAGGTATGTCAAA-AGTCCAGTTGAAATCAAAAATTCCATTTTTCATTCAACTGAATCTTCTCTTTTTCCCTCAGCTTGGGCCTGACTCGTAAT-TGGGAA---GAATAAAGGAAGAAACCGTCTATTCTTTCATTTTCTTTGTTTCATCTCCTCTCCTGCCCCTCATCTT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76967460 394 + 107442819 GGGCTGCAGTTTGGACAAGCTTGGTCTAACTCAAGATAAGCCTCTA---GAA----TACCACAGAACCACCTCCAG--TAAAACCTGTTTGTTTAATTGGCTAAACATGGTAGAATGTAATAATGAacagctttattt---tttctat-----cactCTTCAAACA-----T------AAAGATTCTCTTTTTCCCATGCCTTGGCAAATCCCTTAGCTTCCCAGTCCTGTTGAGATATTAGAACAATTAGATATTCAGGTATGTCAAA-AGTccagttgaaataaaaaattccatttttcattcaactgaatcttctctttttcccttagCTTGGGCCTGACTCATAAT-TGggaa---gaataaaggaagaaaccgtctattctttcattttctttgtttcatctCCTCTCCTGCCCCTCATCTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81231587 394 + 108555830 gggctacagtttggacaagcttgGTCTAACTCAAGATGAGCCTGTA---GAA----TACCACAGAACCACCTCCAG--TAAAGCCTGTTTGTTTAATTGGCTAAACACGGTAGAATGTAATAATGAACAGCTTTATTT---TTTCTAT-----CACTCTTCAAACA-----T------AAAGATTCTCTTTTTCCCATGCCTTGGCAAATCCCTTAGCTTCCCAGTCCTGTTGAGATATTAGAACAATTAGATATTCAGGTATGTCAAA-AGTCCAGTTGAAATAAAAAATTCCATTTCTCATTCAACTGAATCTTCTCTTTTTCCCTCAGCTTGGGCCTGACTCATAGT-TGGGAA---GGATAAAGGAAGAAACCGTCTATTCTTTCATTTTCTTTGTTTCACCTCCTCTCCTGCCCCTCATCTT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111468202 346 - 210400635 aaa-tgcagtttggacgagcttgGTCTAACTCAAG---------------------T-----------------------Aaacctgtttgtttaattggataaacaaggtagaatgcaattataaacagctttattt---tttctat-----cactcttcaaacatacctt------aaagatcctcttttccccatgccttagcaaatcccttaaattctcagtcctgttgcaatactagaaaaattacacattcaggtatgtcaaa-agtccagttcagatcaaaacttccatttctcattcaattgaatcctctctctttccctcagc-----------------t-tcggAA---GGATAGAGGAGGAAACCATCTATTCTTTCATTTTCTTTGTTTCATTTCTTCTCCTGCCCCTCATCTT i calJac3.chr1 C 0 I 10123 s mm10.chr19 38101679 389 - 61431566 GTGCTGTACTTTA--------TGGCCAACCTCAAGATAAACCTATGACCAAA----TACCATGGAGCAACATAGAGtatataacctttctacggaattatccaaatgtggttaaacacagca---aatagttttatttatctttatat-----ctttcaccatata--ccct------gaaga--cttttctcctcattcctggctaaatcccttaac-tcccagttctgctgagttattagaacagtcata-attcaggcatgttaaagagtctagtccaaatcaaaacctccatttgtcattccatcaaaatgcttctaatgttcttggctgggccttgactccttgtctcagga---agataaaggggagggctgtctagtcttaca---tctttatttcaacacctccccagccttccctgtt i mm10.chr19 I 303 C 0 s canFam3.chr1 35347745 318 - 122678785 ---ttgtgaattggctaaacttgat--------------------g---ggg----taccat-----------cag------------------------------------------------gaacagctttattc---tttctttggacgctctcttgaaacg-----taccctaaaatattctcctttctccatccc----ccaatCCCTTAGTTTCCCAGTCCTGTTGAGGTATTAGAATAGTTACCTACTTCTTTGTGTTACACAATCCAGTCCAAATCAAATCTTCAGTTTCTCGTTCAATTGAGTCACCTCTTTTTCCCTTGGCTGAGATCTAACTCGTAGT-TTGGGAATTAGAAAAGGGAAGAAA------GTTCCTTTGTTTTCTTTGTTGGACTTCCTCTTCCACCCCTCATTT- i canFam3.chr1 C 0 C 0 a score=116663.000000 s hg38.chr9_GL383541v1_alt 154292 33 + 171286 CATGACTTTTTAATCAGGGAAGGTGGAAGATGG s panTro4.chr9 68713718 33 + 137840987 CATGACTTTTTAATCAGGGAAGGTGGAAGATGG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64868901 33 + 135191526 CATGATTTTTTAATCAGGGAAGGTGGAAGATGG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57908787 33 - 122973662 CATGATTTTTTAATCAGGGAAGGTGGAAGATGG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79838650 33 + 112192347 tatgatgttttaatcagggaaggtggaagaggg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80918087 33 + 112612857 TATGATGTTTTAATCAGGGAAGGTGGAAGAGGG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76967854 33 + 107442819 TATGATGTTTTAATCAGGGAAGGTGGAAGAGGG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81231981 33 + 108555830 TATGATGTTTTAATCAGGGAAGATGGAAGAGGG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111478671 32 - 210400635 CATGATTTTTTAATCAGGGAAGGTGGAGGAGG- i calJac3.chr1 I 10123 C 0 s mm10.chr19 38102068 33 - 61431566 agtcatcttctagtcagggtgggtagaggaagc i mm10.chr19 C 0 C 0 s canFam3.chr1 35348063 32 - 122678785 CATGAT-CTTTATTCAGGATAAGTGGAAGAGAG i canFam3.chr1 C 0 C 0 a score=111288.000000 s hg38.chr9_GL383541v1_alt 154325 36 + 171286 ATTAAAAGAAAGGAACTTT-AAAAATATTTGGTGCTA s panTro4.chr9 68713751 36 + 137840987 ATTAAAAGAAAGGAACTTT-AAAAATATTTGGTGCTA i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57908820 36 - 122973662 ATTAAAAGAAAGGAACTTT-AAAAATATTTGGTGCTA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79838683 36 + 112192347 attaaaagataggaacttt-agaaatatttggtgcta i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80918120 36 + 112612857 ATTAAAAGATAGGAACTTT-AGAAATATTTGGTGCTA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76967887 37 + 107442819 ATTAAAAGataggaactttaaaaaatatttggtgcTA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81232014 37 + 108555830 ATTAAAAGATAGGAACTGTAAAAAATATTTGGTGCTA i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111478703 36 - 210400635 AAGAAAAGAAAGGAACTTT-TAAAATATTTGTTGCTA i calJac3.chr1 C 0 C 0 s mm10.chr19 38102101 35 - 61431566 ataaaaagaaaagaacttt--aaaatagttggtgcta i mm10.chr19 C 0 C 0 s canFam3.chr1 35348095 36 - 122678785 ATGGAAAGAAAAGAACTTT-TAAAATAGTGGGTGCTA i canFam3.chr1 C 0 I 147 e ponAbe2.chr9 64868934 0 + 135191526 C a score=696283.000000 s hg38.chr9_GL383541v1_alt 154361 274 + 171286 -------------------------------------TTTAAAGTGATCTCTTAGCTATTGAATGTCCTT-TGTTATGACAGATGTCTAAATGCTGGCTCTTTCAGGAGCCTCTGCATCTTACCATTTCTGGCAATGTTCTCACTGGCTAA-------CCCTCTGAGACCACC--CGCTTCCCTTAGTACTTGCACTACAGAATACAACCCACATAGATTTTTCTGTTTGGGTTCC--TCCTGGAAATTTTTCCTT-GGGTTCTTTCTAGAACAGTTGTTTCCAGCCACCTTG--CTAGT-GAGTGTCCATTTGGCCT-CAATAGTGA- s panTro4.chr9 68713787 274 + 137840987 -------------------------------------TTTAAAGTGATCTCTTAGCTATTGAATGTCCTT-TGTTATGACAGATGTCTAAATGCTGGCTCTTTCAGGAGCCTCTGCATCTTACCATTTCTGGCAATGTTCTCACTGGCTAA-------CCCTCTGAGACCACC--CGCTTCCCTTAGTACTTGCACTACAGAATACAACCCACATAGATTTTTCTGTTTGGGTTCC--TCCTGGAAATTTTTCCTT-GGGTTCTTTCTAGAACAGTTGTTTCCAGCCACCTTG--CTAGT-GAGTGTCCATTTGGCCT-CAATAGTGA- i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57908856 271 - 122973662 -------------------------------------TTTAAAGTGCTCTCTTAGCTACTGAATGTCCTT-TGTTATGAC--ATGTCTAAATGCTGGCTCTTTCAGGAGCCTCTGCATCTTACCATTTCTGCCAATGTACTCACTGGCTAA-------CCCTCTGAGACCACC--CCCTTCCCTTAGTACTTGCACTACAGAATACAACCTACATAGA-TTTTCTGTTTGGGTTCC--TCCTGGAAATTTTTCCTT-GGGTTCTTTCTAGAATAGTTGTTTCCAGCCACCTTG--CTAGT-GAATGTCCATTTAGCCT-CAATAGTGA- i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79838719 265 + 112192347 -------------------------------------tttaaaatgatctcttagctactgaatgtcctt-tgttatgacagatgtctaaatgctggctctttcaggagcCTCTGCATCTTACCATTTCTGGCAATGTACT-ACTGGCTAA-------CCCTCTGAGACCACC--CCCTTCCCTTAGTACTTGCACTACAGAATACAACCCACATACA-TTTTCTGT-----------TCCTGGAAATTTTTCCTT-GGGTTCTTCCTAGGACAGTTGTTTCCAGCCACCTTGCTCTAGT-AAGTGTCCATTTGGCCT-CAATAGCGA- i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80918156 265 + 112612857 -------------------------------------TTTAAAATGATCTCTTAGCTACTGAATGTCCTT-TGTTATGACAGATGTCTAAATGCTGGCTCTTTCAGGAGCCTCTGCATCTTACCATTTCTGGCAATGTACT-GCGGGCTAA-------CCCTCTGAGACCACC--CCCTTCCCTTAGTACTTGCACTACAGAATACAACCCACATACA-TTTTCTGT-----------TCCTGGAAATTTTTCCTT-GGGTTCTTCCTAGAACAGTTGTTTCCAGCCACCTTGCTCTAGT-AAGTGTCCATTTGGCCT-CAATAGCGA- i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76967924 265 + 107442819 -------------------------------------TTTAAAATGATCTCTTAGCTACTGAATGTCCTT-TGTTATGACAGATGTCTAAATGCTGGCTCTTTCAGGAGCCTCTGCATCTTACCATTTCTGGCAATGTACT-ACTGGCTAA-------CCCTCTGAGACCACC--CCCTTCCCTTAGTACTTGCACTACAGAATACAACCCACATaca-ttttctgt-----------tcctggaaaTTTTTCCTT-GGGTTCTTCCTAGAACAGTTGTTTCCAGCCACCTTGCTCTAGT-AAGTGTCCATTTGGCCT-CAATAGTGA- i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81232051 265 + 108555830 -------------------------------------TTTAAAATGATCTCTTAGCTACTGAATGTCCTT-TGTTATGACAGATGTCTAAATGCTGTCTCTTTCAGTAGCCTCTGCATCTTACCATTTCTGGCAATGTACT-ACTGGCTAA-------CCCTCTGAGACCACC--CCCTTCCCTTAGTACTTGCACTACAGAATACAACCCACATACA-TTTTCTGT-----------TCCTGGAAATTTTTCCTT-GGGTTCTTCCTAGAACAGTTGTTTCCAGCCACCTTGCTCTAGT-AAGTGTCCATTTGGCCT-CAACAGTGA- i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111478739 278 - 210400635 -------------------------------------TTTAAAATGATCTCTTAGCTATTATATGTCCTT-GGATATGACAGATGTCTAAATACTGACTCTTTAAGGAGCCTCTGCATCTTTCA--TTCTGGCAATGTACTCACCGGCTAA-------CCCTCTGAGACCACC--CCATTCCTTTAGTACTTTCACTACGGAGTACAATCCACATAAATTTTTCTGTTTGGGTTCCCTCCCTGGAAGTTTTCACTT-GGGTTCTTTCAAGAACAGTCTTTTTCAGCCACCTTTGGCTAGTGGAGTGTCCATTTGCCCTCCAGTAGTGA- i calJac3.chr1 C 0 M 314 s mm10.chr19 38102136 255 - 61431566 -------------------------------------ttttacattctcttttggccattgactgtccccgcattgtgacagatgtc-aaatgctggcCAATC--GGAACATCTGCAGCACAGCATTTCTGGCAGTGTCTACTCTACCTAAAAACCAGCCCTTTGC-ACTTCC--TGCCTCCCTGTTAAGGTACACACCTCTGTACAA-CCACCCAGG-TTT----------------TTCTGAAAGTTTCTATT-----TTCTTTGAAGAACATCTTGTTTCATCTACCTTC--CCA---GATTGTCCA-CTGGCCT-CAGAAACTA- i mm10.chr19 C 0 I 1 s canFam3.chr1 35348278 312 - 122678785 ttaaaagtaaaataataaaataaaataGTGGGTGCTATTTCAGATTCTCTCTTGACTGATGAATATCCTC-TGTTATAGCAGATACCTAAATATTGGCTCTTTGGGGAACCACTGCATCTTACAATATCTGGCAGTGTACTTTCTGGCTAA-------TGTCCCGTGACCACCTTCTCTTCCCTTAGTGCTTGCTCTGCAAGCCACAACTCAcacaga-ctttctccttgggttct--acctggcagttttggattggggtcccttcaagagctcttgattccatccacctt---cca-t-gagtgtccatttgacct-caggcactaa i canFam3.chr1 I 147 C 0 e ponAbe2.chr9 64868934 0 + 135191526 C a score=366576.000000 s hg38.chr9_GL383541v1_alt 154635 152 + 171286 TGCACTCCTGCC----TAAGAAGATATGCAGCTTGGTCCTACTGCTGAC--CTC--T-----TTTCTTGCTGC-TTCAGCAG---ATTCTGGGACAATGTTGCTTTGGTAAAGGATGCTGTTGAAGAGATTTAGCATTGGCCCAAAGGCAGACCAGATGCTCACTTTCA s panTro4.chr9 68714061 152 + 137840987 TGCCCTCCTGCC----TAAGAAGATATGCAGCTTGGTCCTACTGCTGAC--CTC--T-----TTTCTTGCTGC-TTCAGCAG---ATTCTGGGACAATGTTGCTTCGGTAAAGGATGCTGTTGAAGAGATTTAGCATTGGCCCAAAGGCAGACCAGATGCTCACTTTCA i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57909127 154 - 122973662 TGCACTCTTGCC----TAAGAAGATATGCAGCTTGGTCCTACTGCTGAA--CTCTTT-----TTTCTTGCTGC-TTCAGCAG---ATTCTGGGACAATGTTGCTTTGGTAAAGGATGCTGTTGAAGAGATTTAGCATTGGCCCAAAGGCAGACCAGTTGCTCACTTTGA i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79838984 156 + 112192347 TGCACTCCTGCCTAACTAAGAAGATAGGCAGCTTGGTCCTACTGCTGAC--CTT--T-----TTTCTTGCTGC-TTCAGCAG---ATTCTGGGACAATGTTGCTTCAGTAAAGGATGCTGTTGAAGAGATTTAGCATTGGCCCAAAGGCAGACCAGATGCTCACTTTCA i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80918421 156 + 112612857 TGCACTCCTGCCTAACTAAGAAGATAGGCAGCTTGGTCCTACTGCTGAC--CTT--T-----TTTCTTGCTGC-TTCAGCAG---ATTCTGGGACAATGTTGCTTCAGTAAAGGATGCTGTTGAAGAGATTTAGCATTGGCCCAAAGGCAGACCAGATGCTCACTTTCA i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76968189 158 + 107442819 TGCACTCCTGCCTAATTAAGAAGATAGGCAGCTTGGTCCTACTGCTGAcctctt--t-----tttcttgctgc-ttcaGCAG---ATTCTGGGACAATGTTGCTTCAGTAAAGGATGCTGTTGAAGAGATTTAGCATTGGCCCAAAGGCAGACCAGATGCTCACTTTCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81232316 158 + 108555830 TGCCCTCCTGCCTAACTAAGAAGATAGGCAGCTTGGTCCTACTGCTGACCTCTT--T-----TTTCTTGCTGC-TTCAGCAG---ATTCTGGGACAATGTTGCTTCGGTAAAGGATGCTGTTGAAGAGATTTAGCACTGGCCCAAAGGCAGACCAGATGCTCATTTTCA i chlSab2.chr12 C 0 C 0 s mm10.chr19 38102392 148 - 61431566 TGCACTCTCACC-------TAAAATGTGCTACCTGGTCCTACAGCTACC--ATT--T-----CCCCATGCTGC-TTTGGCAG---ATGCAGGACAAGTATTTCCTCAGGGCATGATGCTATTGAAGAGATTCAATACTGG-CCAAAGGTAAACCAGATGTCGACTTTTG i mm10.chr19 I 1 C 0 s canFam3.chr1 35348590 161 - 122678785 tgcactcttgcctgattaaggagatgtgcaggttggtcctaccactgac--ctt--tctttctttcctTCTGCGTTCGGGAGCTTATTCTGGAACACTGTTGCTTCAATAGAC-ATGATGTTAAAGACATTCAGCATTGGTCCA---GTAGAATAGATTCCCACTTCCA i canFam3.chr1 C 0 C 0 e ponAbe2.chr9 64868934 0 + 135191526 C e calJac3.chr1 111479017 314 - 210400635 M a score=1040270.000000 s hg38.chr9_GL383541v1_alt 154787 401 + 171286 GCATTGAGTGAAGGATGCTAAGGTGGTTCC--TTATGTGTGAAGCTATC--TCT---GGAAAGATATCAGGATGTTAAAAATATAACTAGAAAGGCCTATATGTATTA----GGACTATTCTAAAAGCTTAtaacagaaaatacaactc--------aaactgacttaagtgaaaagaaaatccttttttggactttgttac-agaaagagactactgtggggttagcttcaggcacagcttgatgcagggattaaaactgtgtcctcaggagccagtttctctctc--tctttctctttctacctcttt---------------------------------------------------------------gagctagtttttctgggtgggctccaatct-agacaggatctcctgtcatggcaacacagtggctgtagcaactgcagtctcatgggcctttcaacattgaatctagcggaaag s panTro4.chr9 68714213 401 + 137840987 GCATTGAGTGAAGGATGCTAAGGTGGTTCC--TTATGTGTGAAGCTATC--TCT---GGAAAGATATCAGGATGTTAAAAATATAACTAGAAAGGCCTATATGTATTA----GGACTATTCTAAAAGCTTAtaacagaaaatacaactc--------aaactgacttaaatgaaaagaaaatccttttttggactttgttac-agaaagagactactgtggggttagcttcaggcacagcttgatgcagggattaaaactgtgtcctcaggagccagtttctctctc--tctttctctttctacctcttt---------------------------------------------------------------gagctggtttttctgggtgggctccaatct-agacaggatcttctgtcatggcaacacagtggctgtagcaactgcagtctcatgggcctttcaacattgaatctagtggaaag i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57909281 397 - 122973662 GCACTGAGTGAAGGATGCTAAGGTGGCTCC--TTATGTATGAAGCTATC--TTT---GGAAAGAGATCAGGATGTT-AAAATATAACTAGAAAGGCCTATATGTATTA----GGACTATTCTAAAAGCTTAtaacagaaaatacaactc--------aaactgacttaagtgaaaagaaaatccttcttcggactttgttac-agaaaaagactactgtggggttagcttcaggcacagcttgatgcagggattaaaactgtgtcctcaggagccagtttctctctc--tc--cctctttctgtctcttt---------------------------------------------------------------gagctggtttttctgggtgggctccaatct-acacaggatctcctgtcatggcaacacggtggctgtagcaactgcagtctcat-ggcctttcaacattgaatctagtggaaag i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79839140 394 + 112192347 GCACTGAGTGAAGGATGATAAGGTGGCTCC--TTGTGTGTGAAGCTATC--TCT---GGAAAGATATCAGGATGTTAAAAATATAACTAGAAAGGCCTATATGTATTA----GGACTATTCTAAAAGCTTAtaacagaaaacacaactc--------aaactgacttaagtgaaaagaaaatccttttttggactttgttac-ggaaagagactactgtggggttagcttcaggcacagcttgatgcagggattaaaactgtgtcctcaggagccagtt----tctc--tc--tctctttctacctcttt---------------------------------------------------------------gagctggtttttctgggtttgctccaatct-agacaggatctcctgtcatggcaacacagtggctgtagcaactgcagtctcat-ggcctttcaaaaatgaatctagtggaaag i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80918577 397 + 112612857 GCACTGAGTGAAGGATGATAAGGTGGCTCC--TTGTGTGTGAAGCTATC--TCT---GGAAAGATATCAGGATGTT-AAAATATAACTAGAAAGGCCTATATGTATTA----GGACTATTCTAAAAGCTTAtaacagaaaacacaactc--------aaactgacttaagtgaaaagaaaatccttttttggactttgttac-ggaaagagactactgtggggttagcttcaggcacagcttgatgcagggattaaaactgtgtcctcaggagccagtttctctctc--tc--tctctttctacctcttt---------------------------------------------------------------gagctggtttttctgggtttgctccaatct-agacaggatctcctgtcacggcaacacagtggctgtagcaactgcagtctcat-ggcctTTCAAAAATGAATCTAGTGGAAAG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76968347 400 + 107442819 GCACTGAGTGAAGGATGATAAGGTGGCTCC--TTGTGTGTGAAGCTATC--TCT---GGAAAGATATCAGGATGTTAAAAATATAACCAGAAAGGCCTATATGTATTA----GGACTATTCTAAAAGCTTATAACAGAAAACACAACTC--------AAACTGacttaagtgaaaagaaaatccttttttGGACTTTGTTAT-GGAAAGAAACTACTGTGGGGTTAGCTTCAGGCACAGCTTGATGCAGGGATTAAAACTGTGTCCTCAGGAgccagtttctctctctgtc--tctctctctacctcttt---------------------------------------------------------------gAGCTGGTTTTTCTGGGTTTGCTCCAATCT-AGACAGGATCTCCTGTCATGGCAACACAGTGGCTGTAGCAACTGCAGTCTCAT-GGCCTTTCAAAAATGAATCTAGTGGAAAG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81232474 396 + 108555830 GCACTGAGTGAAGGATGATAAGGTGGCTCC--TTGTGTGTGAAGCTCTC--TCT---GGAAAGATACCAGGATGTTAAAAATATAACTAGAAAGGCCTATATGTAGTA----GGACTATTCTAAAAGCTTAtaacagaaaatacaactc--------aaactgacttaagtgtaaagaaaatccttttttggactttgttac-ggaaagagactactgtggggttagcttcaggcacagcttgatgcagggattaaaactgtgtcctcaggagccagtt--cctctc--tc--tgtctctctacctcttt---------------------------------------------------------------gagctggtttttctgggtttgctccaatct-agacaggatctcctgtcatggcaacacagtggctgtagcaactgcagtctcat-ggcctttcaaaaatgaatctagtggaaag i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111479334 466 - 210400635 GCATTGAGTGAAGGTTGCTAAGGTGGCTCTAAAAATGTGTGGAACTATC--CTCTAGAGAAAGATATCAGGATGTTAAAAATATAACTAGAAAGGCCtgtatgtatta----ggactattctgaaagcttataacagaaaatacaactc--------aaactgacttaagtgaaaaggaaatatttttttggactttgttac-agaaagagactagtgtgggcatagcttcaggcacagcttgatgcaggggttaaaactgtgtcctcaggagccagtttctctctc--tc--tctttctctttctctctctctctctctccccccctccctccctccctctctcccccctccctcctctcctccctctctcccAACTGGTTTTTCTGGGTTGGCTCCAATCT-AGACATGATCTCCTGTCATGGCAACACAGTGGCTGTAGCAACTGCAGTCTCAT-GGCCTTTGAACATTGAATCTAGTGGAAAG i calJac3.chr1 M 314 C 0 s mm10.chr19 38102540 338 - 61431566 GTA-TGACT-AATGATTCTAAAAATACTAC-----------AAGATCCCCATCT---GAAAATGCATCAGGAAGTCACACTGATA-----------CTATATGTCATATATGGAAACACttgggtagcatacaacag-aaacaggaatc--------aaaccagtttaagtggacagagag-ctccttctgaattttgatactggtaaaggtcca-------------ttcaggcatatcctgttgcaaaagataaag-ggtataatcatgagac--------tctt--t---gctctttct-----------------------------------------------------------------------ccactgggttttctggattggcttcagtctcagaaaggatatcctagcatggta-------------agcagaggtagcctcAT-GGACTTTCAACACACACTTCTTTGGAAAG i mm10.chr19 C 0 C 0 s canFam3.chr1 35348751 367 - 122678785 GCACTGAGTAGAAGATTCTAAGGGGTCTCTAAGAGTATGTGAGGCTGTA--TCT---GGAAG---ACCAGGGGGTTAAAAAGATAATT-GAAAGACTTGTATGAAAAA----------------------AAAAAAAAAAGAAAGACTTGTATGTTAATACTGTTTTGGTTgggaatag-----tttgttgccctttgtaac-agacaaaatccatt-tagggttagctctagggacaatttgatgcagaggataaaactgtgtgatcaggagccagtt----tccc--tc-----ctgtctacctctct---------------------------------------------------------------gctctggttttttggggttgactctaatcttagataggctctcatctcatgatagcaagacggctgtagcaactgta--------ggTCTTTCAATATTAAATCTAGTGGAAAg i canFam3.chr1 C 0 I 163 e ponAbe2.chr9 64868934 0 + 135191526 C a score=62807.000000 s hg38.chr9_GL383541v1_alt 155188 27 + 171286 tgaa----------------------------------------------aactcagacaaaaatacccaaac s panTro4.chr9 68714614 27 + 137840987 tgaa----------------------------------------------aacttagacaaaaatacccaaac i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57909678 27 - 122973662 tgaa----------------------------------------------aactcagacaaaaatacccaaac i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79839534 27 + 112192347 tgaa----------------------------------------------aactcagacaaaaatacccaaat i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80918974 27 + 112612857 TGAA----------------------------------------------AACTCAGACAAAAATACCCAAAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76968747 27 + 107442819 TGAA----------------------------------------------AACTCAGACAAAAATACCCAAAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81232870 27 + 108555830 tgaA----------------------------------------------AACTCAGACAAAAATACTCAAAC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111479800 27 - 210400635 TGAA----------------------------------------------AACTCAAACAAAAATAGCCACAC i calJac3.chr1 C 0 C 0 s mm10.chr19 38102878 27 - 61431566 GGGT----------------------------------------------AACTGTGATGAAAAATCTCCAAC i mm10.chr19 C 0 I 165 s canFam3.chr1 35349281 73 - 122678785 tgaataaataaataaaatattaaaaataaaTAAATCGAGTGGAAAGAGGTAACTCAAACAAAAATTTTAAAAA i canFam3.chr1 I 163 I 1 e ponAbe2.chr9 64868934 0 + 135191526 C a score=673562.000000 s hg38.chr9_GL383541v1_alt 155215 251 + 171286 tgaa---tctcattggctctgattggAAATGTCTTGAGGGCATAGTACTATAAA---GGtcatttttgattccccacagaatttagtattctgccttatacacaatagttgctcaaaaatgcctatg--------gaatgaatgaatgaatgaatgcacaaatgaat-aaatgaatCTAT--AAACCTTCACTGACACATTTAATAATAACTAACCAATTAATTAGTGAGACCCTAGAAAATGGGATGGTGGAAAGGTATCTATTTAT s panTro4.chr9 68714641 251 + 137840987 tgaa---tctcattggctctgattggAAATGTCTTGAGGGCATAGTACTATAAA---GGTCATTTTTGATTCCCCACAGAATTTAGTATTCTGCCTTATACACAATAGATGCTCAAAAATGCCTATG--------gaatgaatgaatgaatgaatgcacaaatgaat-aaatgaatCTAT--AAGCCTTCACTGACACATTTAATAATAACTAACCAATTAATTAGTGAGACCCTAGAAAATGGGATGGTGGAAAGGTATCTATTTAT i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57909705 242 - 122973662 tgaa---tctcattggctctgactggAAATGTcttgagggcatagtacaatgactatagtcatttttaattccccacaaaatttagtattctgtcttatacacaataggtgctcaaaattgcctatg--------------------gaatgaatgCACAAATGAAT-AAATGAATCTAT--AAGCCTTCACTGACACATTTAATAATAACTAACCAATTAATTAGTGAGACCCTAGAAAATGGGATGGTAAAAAGGTATCTTTTTAT i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79839561 250 + 112192347 tgaa---tctcaccggctctgattggAAATGTCTTGAGGGCATAGTACTAAAAA---GGTCATTTTTGATTCCCCACAAAATttagtattctgccttatacacaataggcgctcaaaaatgcctatg--------gagcgaatgaatGAATGAATGCAAAAACAAAT--AATGAATCTAT--AAGCCTTCACTGACACATTTAATAATAACTAACCAATTAATTAGTGAGACCTCAGAAAATGGGATGGTAGAAAGGTATCTTTTTAT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80919001 250 + 112612857 TGAA---TCTCACCGGCTCTGATTGGAAATGTCTTGAGGGCATAGTACTAAAAA---GGTCATTTTTGATTCCCCACAAAATTTAGTATTCtgccttatacacaataggcgctcaaaaatgcctatg--------gagcgaatgaatgaatgaatGGAAAAACAAAT--AATGAATCTAT--AAGCCTTCACTGACACATTTAATAATAACTAACCAATTAATTAGTGAGACCTCAGAAAATGGGATGGTAGAAAGGTATCTTTTTAT i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76968774 250 + 107442819 TGAA---TCTCACCGGCTCTGATTGGAAATGTCTTGAGGGCATAGTACTAAAAA---GGTCATTTTTGATTCCCCACAAAATTTAGTATTCTGCCTTATACACAATAGGTGCTCAAAAATGCCTATG--------gagcgaatgaatgaatgaatgcaaaaacaaat--aatgaatctAT--AAGCCTTCACTGACACATTTAATAATAACTAACCAATTAATTAGTGAGACCTCAGAAAATGGGATGGTAGAAAGGTAACTTTTTAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81232897 251 + 108555830 TGAA---TCTCACCGGCTCTGATTGGAAATGTCTTGAGGGCATAGTACTACAAA---GGTCATTTTTGATTCCCCACAAAATTTAGTATTCTgccttgtacacaataggtgctcaaaaatgcctatg--------gagtgaatgaatgaatgaatgcaaaaatgaat-aaatgaatCTAT--AAGCCTTCACTGACACATTTAATAATAACTAACCAATTAGTTAGTGAGACCTCAGAAAATGGGATGGTAGAAAGGTATCTTTTTAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111479827 239 - 210400635 TGAGTCTTCTCATTGGCTCTGATTAGAAATGTCTTCAGGGCATGGTACCATAAA---GGTCATTTTTGATTCCCCACAAAATTTCATATTCtgccttatacatgatatgtgctcaaaaatgcctatg----------------gaatgaatgaatGCACAAATGAAAAAAATGAATCTAC--AAGCCTTCATTGACACATTTAATAATAAC--------TATTTAGTGAAACCCCAGAAAATGGGATGAAAGAAAGGTATCTTTTTAT i calJac3.chr1 C 0 C 0 s mm10.chr19 38103070 248 - 61431566 TGAG---CCTTATTGGCTCTGAATAGCAATGTCATGAGAGCAGAGTATTATAAG-------CCTGTTGAATTCCCACAGTACTTAATATTGTGACTTATGCATGATAGACATGCAAAAATCATTGTGGGataagtgaacaaatgcatgaatgagtgagtgagtgagt-aaatgaataaaCAAAAACCTTTCCTTGAACATATACGAATA-----CTCATTATATAGCAAGACCTCCAATAAC----Tggcatagtggtacacatttat i mm10.chr19 I 165 I 216 s canFam3.chr1 35349355 216 - 122678785 TGAG---TTTCATTGGCTCTGATTGATAATGTCTTCagggcaaggtactgccaa---ccttggttttgaatccccatagggcttaatcttgtaccttgtatactacagatgctcagaaatgtctttg--------------------------------gaatgaat-aaatGAG-CTAT--AAGCCCTCCTTGACACATATA--AATAACTAGCCATTTATTTAGCAAAACCCCTAGAA--------GTAGGGAGGTATCTTTTTAT i canFam3.chr1 I 1 C 0 e ponAbe2.chr9 64868934 0 + 135191526 C a score=201881.000000 s hg38.chr9_GL383541v1_alt 155466 74 + 171286 TGCAAGAGGATT-----GAAGTCAAGAATGAATCAGTTTTAGCTAGAgtctattgtagtctagatgttatgtgtatgtg s panTro4.chr9 68714892 74 + 137840987 TGCAAGAGGATT-----GAAGTCAAGAATGAATCAGTTTTAGCTAGAGTCTATTGTAGTCTAGATGTTATGTGTATGTG i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57909947 74 - 122973662 TGCAAGAGGACT-----GAAGTCAAGAATTAATCAGTTTTAGCTAGAGTCTATTGTAGTCTAGATGTTATGTGTATGTG i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79839811 74 + 112192347 TGCAAGAGGATT-----GAAGACAAGAATTAATCAGTTTTAGCTAGAGCCTATTGTGGTCTAGATGTTATGTGTATGTG i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80919251 74 + 112612857 TGCAAGAGGATT-----GAAGACAAGAATTAATCAGTTTTAGCTAGAGCCTGTTGTGGTCTAGATGTTATGTGTATGTG i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76969024 74 + 107442819 TGCAAGAGGATT-----GAAGACAAGAATTAATCAGTTTTAGCTAGAGCCTATTGTGGTCTAGatgttatgtgtatgtg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81233148 74 + 108555830 TGCAAGAGGACT-----GAAGACAAGAATTAATCAGTTTTAGCTAGAGCCTATTGTGGTCTAGATGTTATGTGTATGTG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111480066 74 - 210400635 TCCAAGAGGATT-----GAGGTCAAGAATTAAACAATTTTAGCTAGAGTCTATTGTAATCTAGATGTTGTTTATATGTG i calJac3.chr1 C 0 C 0 s canFam3.chr1 35349571 79 - 122678785 TATAAGAGGAGTAGAGAAAGGTCAGGAACAAATCAGTTTGAGTTAGAGTCCATTGTAATCATGATGTTGTATTTATGTG i canFam3.chr1 C 0 C 0 e mm10.chr19 38103318 216 - 61431566 I e ponAbe2.chr9 64868934 0 + 135191526 C a score=467541.000000 s hg38.chr9_GL383541v1_alt 155540 164 + 171286 tatTTTTCTT------GAGAAGG--TTGATAGTTTTTCTTCCTTTTGT-CAGGTATAG---------CAGTAAG------------AGATCTAATAAGAGGT------ACAACCA---AAGAGAACTATGTTATGGTAGACTACTACA-GGGAATTCTGTGGGTAATGAAGACTGTGGAATGCCTTAGACATGGAAGAGAAGAC s panTro4.chr9 68714966 164 + 137840987 TATTTTTCTT------GAGAAGG--TTGATAGTTTTTCTTCCTTTTGT-CAGGTATAG---------CAGTAAG------------CGATCTAATAAGAGGT------ACAACCA---AAGAGAACTATGTTGTGGTAGACTACTACA-GGGAATTCTGTGGGTAATGAAGACTGTGGAATGCCTTAGACATGGAAGAGAAGAC i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57910021 166 - 122973662 TGTTTTTCTTG----AGAGAAGG--TTGATAGTTTTTCTTCCTTTTGT-CAGATATAG---------CAGGAAG------------AGATCTAGTAAGAGGC------ACAACCA---AAGAGAACTATGTTGTGGTGGACTACTACA-GGGAATTCTGTGGGTAACGAAGACTGTGGAATGCCTTAGACATGGAAGAGAAGAC i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79839885 166 + 112192347 TATTTTTCTTG----AGAGAAGG--TTGACAGTTTTTCTTCCTTTTGT-CAGGGATAG---------CAGTAAG------------AGATCTAAGAAGAGGT------ACAACCA---AAGAGAACTATGTTGTGGTAAACTACTACA-GAGAATTCTGTGGTTAACAAAGACTGTGGAGTGCCTTAGACATGGAAGAGAAGAC i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80919325 166 + 112612857 TATTTTTCTTG----AGAGAAGG--TTGACAGTTTTTCTTCCTTTTGT-CAGGGATAG---------CAGTAAG------------AGATCTAAGAAGAGGT------ACAACCA---AAGAGAACTATGTTGTGGTAAACTACTACA-GAGAATTCTGTGGTTAACAAAGACTGTGGAGTGCCTTAGACATGGAAGAGAAGAC i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76969098 166 + 107442819 tatttttcttg----AGAGAAGG--TTgacagtttttcttccttttgt-cagGGATAG---------CAGTAAG------------AGATCTAAGAAGAGGT------ACAACCA---GAGAGAACTATGTTGTGGTAAACTACTACA-GAGAATTCTGTGGTTAACAAAGACTGTGGAGTGCCTTAGACATGGAAGAGAAGAC i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81233222 166 + 108555830 TATTTTTCTTG----AGAGAAGG--ATGATAGTTTTTCTTCCTTTTGT-CAGGGATAG---------CAGTAAG------------AGATCTAAAAAGAGGT------ACAACCA---AAGAGAACTATGTTGTGGTAGACTACTACA-GGGAATTCTGTGGTTAACAAAGACTGTGGAATGCCTTAGACATGGAAGAGAAGAC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111480140 168 - 210400635 TATTTTTCTTG----AGAGAAGGTTTTGGTAGTTTTTCTTCCTTTTGT-TGGGGAGAG---------CAGTAAC------------AGATCTAAGAAGAGGT------ACAACCA---AAGAGAACTGTGTTGTGGTAGACTACTATA-GGGAATTTTGTGGGTAAAGAACACTGTGGAATGCCTTAGATGTGGAagagaagac i calJac3.chr1 C 0 I 1577 s mm10.chr19 38103534 177 - 61431566 TGTTTTTCTGG-----GAGAAGG--TTGATAGTTTTTATCCCATGTATGCAGACATAAAGAAGGTTTCATTTAG------------AGGTATAAAAAGATGCCATCAAACATTCACATAAGATGACAATGTCACAGCAG----TAGGG-GAGCATATTCTGGATAAC--AGACTGTGAAATGCCTT-GACATGGAAGACAGGGC i mm10.chr19 I 216 C 0 s canFam3.chr1 35349650 181 - 122678785 CATTTTTCTTGGATGGAGGAGAG--TTGATAGTTTTTCTTCCATTTCT-CAGAGACAC---------CAAGAAGGCTAGTTGTAGCAGATCTGAGAAGAGAT------ACTCTCA---AAGAGAGCTATGCTGTGGTAGATTGCCACAGGGGAATTTTCAGGGTAAC--ATGCTGTGGAATGTCTTGGACATAGAAGAGAGCAC i canFam3.chr1 C 0 C 0 e ponAbe2.chr9 64868934 0 + 135191526 C a score=556580.000000 s hg38.chr9_GL383541v1_alt 155704 236 + 171286 -ATAGAA--AAAT-----AGCACTGAAGGGAAGGAGTCCCTGA-AAAGGGCAAGGAGAGACACC-AGGCC------A-GGTTATAACAAACCca----ggaacttagggcatcaggacaacctaaggtttcccattcactaagtaaggttcccattcaccttgagaaagttacttaaaatctctaagtctcagttctgtcatctagaaa-----atgagaa---------------------------------------------------------------------taatcataaccacttacctattttcctaacttcacagggtg s panTro4.chr9 68715130 236 + 137840987 -ATAGAA--AAAT-----AGCACTGAAGGGAAGGAGTCCCTGA-AAAGGGCAAGGAGAGACACC-AGGCC------A-GGTTATAACAAACCCA----GGAACTTAGGGCATCAGGACAACCTAAGGTTTCCCATTCACTAGGTAAGGTTCCCATTCaccttgagaaagttacttaaaatctctaagtctcagttctgtcatctagaaa-----atgagaa---------------------------------------------------------------------taatcataaccacttacctattttcctaacttcacagggtg i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57910187 305 - 122973662 -CTAGAA--AAAT-----AGCACTGAAGGGAAGGAGTCCCTGA-AAAGGGCAAGGAGGAACACC-AGGCC------A-GGTTATAACAAACCca----tgaacttagggcatcaggacaacctaaggtttcccattcactaggtaaggttcccattcaccttgagaaagttacttaaaatctctaagtctcggttctgtcatctagaaa-----atgagaataatcataaccacttacctATTTTCCTATTTTCATAGGATGGTTGAATTTAATCATAACCACTTGAATTTAATCATAACCACTTACCTATTTTCCTATTTTCataggatg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79840051 219 + 112192347 -ATAGAA--AAATAGTG-AGCATTGAAGGGAAGGAGTCCCTGA-AAAGGGCAAGGAGAGACACC-AGGCC------A-GGTTATAACAAACCCA----TGAACTTAGGGCATCAGGACAACC---------------------TAAGGTTCCCATTCaccttgagaaagttacttaaaatctctaagtctcagttctgtcatctagaaa-----atgagaa---------------------------------------------------------------------taatcataaccacttacctattttcctaacttcatagggtg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80919491 219 + 112612857 -ATAGAA--AAATAGTG-AGCATTGAAGGGAAGGAGTCCCTGA-AAAGGGCAAGGAGAGACACC-AGGCC------A-GGTTATAACAAACCCA----TGAACTTAGGGCATCAGGACAACC---------------------TAAGGTTCCCATTCaccttgagaaagttacttaaaatctctaagtctcagttctgtcatctagaaa-----atgagaa---------------------------------------------------------------------taatcataaccacttacctattttcctaacttcatagggtg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76969264 219 + 107442819 -ATAGAA--AAATAGTG-AGCATTGAAGGGAAGGAGTCCCTGA-AAAGGGCAAGGAGAGACACC-AGGCC------A-GGTTATAACAAACCCA----TGAACTTAGGGCATCAGGACAACC---------------------TAAGGTTCCCATTCACCTTGAGAAAGTTACTTAAAATCTCTAAGTCTCAGTTCTGtcatctagaaa-----atgaaaa---------------------------------------------------------------------taatcataacCACTTACCTATTTTCCTAACTTCATAGGGTG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81233388 219 + 108555830 -ACAGAA--AAACAGTG-AGCACTGAAGGGAAGGAGTCCCTGA-AAAGGGCAAGGAGAGACACC-AGGCC------A-AGTTATGACAAACCCA----TGAACTTAGGGCATCAGGACAACC---------------------TAAGGTTCCCATTCaccttgagaaagttacttaaaatctctaagtctcagttctgtcatctagaaa-----atgagaa---------------------------------------------------------------------taatcataaccacttacctattttcctaacttaatagggtg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111481885 232 - 210400635 -aaagaa--aaaTAGTG-AGCACTGAAGGGAAGGAGTCCCTGA-AAAGGGTAAGGAGAGGCACC-AAGCC------A-GGTTATAACAGACCCA----tgaacttagggcatcagaagaacctatggtttcccattcactaggtatgag--------accttgagaaagtgacttaaaatctctaagtctcagttttgtcatctagaaa-----ataagaa---------------------------------------------------------------------caattataactacttacctgctaacctaacttcatagggta i calJac3.chr1 I 1577 C 0 s mm10.chr19 38103711 228 - 61431566 ---AGAATCAGATGGGGAAGTAGTGAAGGT--GCCTTTCCTGAGAAAGAGcaaagggaagcaatgaggcc------aggggtggaagagatgcaggcgtgggctttggagat-gggataacccaacgaat-tcactcactgagtatgg----------ccttcgggaagctacctaaatcccc--agtt---gacttgacttctagaaa-----atgcgaa---------------------------------------------------------------------taactacaactac-cACTCACTTACCTAACTACAAGGAGTG i mm10.chr19 C 0 C 0 s canFam3.chr1 35349831 225 - 122678785 AAAGCAA--AAATAATA-AGCAGTGGAGGAAAGGGGTCTTTGA-AAAGGGCAAGGAGGGTCACC-AGACTTCCACGA-GGT----ACAGACCAA----TGAACTTTGGAATT----ATACCc----------cactcactatgtatgga--------gccatgagatagttacataaaatctcttcatttcatttgtgtcatctcaaagattatataagaa---------------------------------------------------------------------taattatagccccttgcctatctacctg-ctttataggctg i canFam3.chr1 C 0 C 0 e ponAbe2.chr9 64868934 0 + 135191526 C a score=63292.000000 s hg38.chr9_GL383541v1_alt 155940 22 + 171286 gttgaatttaaaaactgaaagg s panTro4.chr9 68715366 22 + 137840987 gttgaatttaaaaactgaaagg i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57910492 22 - 122973662 gttgaatttaaaaactgagagg i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79840270 22 + 112192347 gttgaatttaaaaactgagagg i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80919710 22 + 112612857 gttgAATttaaaaactgagagg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76969483 22 + 107442819 GTTGAATTTAAAAACTGAGAGG i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81233607 22 + 108555830 gttgaatttaaaaactgagagg i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111482117 21 - 210400635 gttgaatttaagaactgagag- i calJac3.chr1 C 0 I 274 s canFam3.chr1 35350056 22 - 122678785 gttAAGTTTAAAAATTGAGAGA i canFam3.chr1 C 0 C 0 e mm10.chr19 38103939 0 - 61431566 C e ponAbe2.chr9 64868934 0 + 135191526 C a score=324462.000000 s hg38.chr9_GL383541v1_alt 155962 119 + 171286 ctttgggattagactgc--cta-ggttcaaatctcagttctacctttaacctctctaagcctattttctttatctttgtattaagaataattaatacctacctcacagactgtggtgaggtt s panTro4.chr9 68715388 119 + 137840987 ctttgggattagactgc--cta-ggttcaaatctcagttctacctttaacctctctaagcctattttctttatctttgtattaagaataattaatacctacctcacagactgtggtgaggtt i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57910514 119 - 122973662 ctttgggattagactgc--ctg-ggttcaaatctcagttctacctttaacctctctaagcctattttctttatctttgtattaagaataattaatacctacctcacagactgtggtgaggtt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79840292 118 + 112192347 ctttgggattagactgc--ct--ggttcaaatctcagttctacctttaacttttctaagcctattttctttatctttgtattaagaataattaatacctacctcacagattgtggtgaggtt i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80919732 118 + 112612857 ctttgggattagactgc--ct--ggttcaaatctcagttctacctttaacttttctaagcctattttctttatctttgtattaagaataattaatacctacctcacagattgtggtgaggtt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76969505 118 + 107442819 CTTTGGGATTAGACTGC--Ct--ggttcaaatctcagttctacctttaacttttctaagcctattttctttatctttgtattaagaataattaatacctacctcacagatTGTGGTGAGGTT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81233629 118 + 108555830 ctttgggattagactgc--ctg-ggttcaaatctcagttctacctttaacctttctaagcc-agtttctttatctttgtattaagaataattaatacctacctcacagactgtggtgaggtt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111482412 119 - 210400635 ctttgggattagactgc--ctg-ggttcaaatctcagttatacctttaaactctctaagcccattttctttttctttgtatttagaacgattaacacttacctcacagactgtgcggaggtt i calJac3.chr1 I 274 C 0 s canFam3.chr1 35350078 119 - 122678785 -TTTGGGACTCAACTGCTGCTACGGTCCAAATCTCACTTCTACCTTGaacatctctaaatgtcatttccttatc--tgtatgtggaataattagtacctacatcatagattgtggtgaCATT i canFam3.chr1 C 0 I 240 e mm10.chr19 38103939 0 - 61431566 C e ponAbe2.chr9 64868934 0 + 135191526 C a score=637866.000000 s hg38.chr9_GL383541v1_alt 156081 230 + 171286 taaatgaaac---------aagatataaaacatacttagaataagacctggcatatgacaattaat-tattgctctattattCATTTactccttcattcagcaaatagctattgagtgtctactatgtgccaggtactgttttaggtactcatgaaacacagatgaacaaaac-agacaagcatttaccctcacggaacttctagtagaggag-------acagacaagaaatattaagcttaattat s panTro4.chr9 68715507 230 + 137840987 taaatgaaac---------aagatataaaacatacttagaataagacctggcatatgacaattaat-tattgctctattattCATTTattccttcattcagcaaatagctattgagtgtctactatgtgccaggtactattttaggcactcatgaaacacagatgaacaaaac-agacaagcatttaccctcacagaacttctagtagaggag-------acagacaagaaatattaagcttaattat i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57910633 229 - 122973662 taaatgaaac---------acgatataaaacatacttagaataagacctggcatatgacaattaat-tattgctgtattattCATTTattccttcattcagcaaatagctgttgagtatctactatgtgcctgatactgttttaagcacttgtgaaacacagatgaacaaaac-agacaag-atttaccctcatggaacttctagtagaggag-------actgacaagaaatattaagcttaattat i nomLeu3.chr1a C 0 I 108 s rheMac3.chr15 79840410 230 + 112192347 taaatgaaac---------aagatataaaacatacttacaataagacctggcatatgacaattaat-tattgctctattattCATTTattccttcattcagcaagtatctattgagtgtctactacgtgccaggtactgttttagaaacttgtgaaacacagatgaacaaaac-agacaagcattcaccctcatggaacttctagtagaggag-------acagacgagaaatattaagcttaattat i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80919850 230 + 112612857 taaatgaaac---------aagatataaaacatacttacaataagacctggcatatgacaattaat-tattgctctattattCATTTattccttcattcagcaagtatctattgagtgtctactacgtgccaggtactgttttagaaacttgtgaaacacagatgaacaaaac-agacaagcattcaccctcatggaacttctagtagaggag-------acagacgagaaatattaagcttaattat i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76969623 230 + 107442819 TAAATGAAAC---------AAGATATAAAACATACTTACAATAAGACCTGGCATATGACAATTAAT-TATTGctctattattcatttattccttcattcagcaagtatctattgagtgtctactatgtgccaggtactgttttagAAACTTGTGAAACAcagatgaacaaaac-agacaagcaTTCACCCTCATGGAACTTCCAGTAGAGGAG-------ACAGACGAGAAATACTAAGCTTAATTAT i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81233747 230 + 108555830 taaatgaaac---------aagatataaaacatacttacaataagacctggcatatgacaattaat-tattgctctattatGCATTTattccttcattcagcaagtatctattgagtgtctactatgtgccaggtactgttttagaaacttgtgaaacacagatgaacaaaac-agacaagcattcaccctcatggaacttctagtagaggag-------acagacaagaaatactaagcttaattat i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111482531 230 - 210400635 taaatgaaac---------aagatataaaacatacttagaataagacctggcatatgacaattaat-tcttgctctattattCATTTattccttcatttagccaatatctattgaatgtctactgtgtgccaggtactgttttaggcacttgtgaaacacagatgaacaaaac-agacaagcatttaccctcatggaacctctagtagaggag-------acagacaagaaatattacgcttaatcat i calJac3.chr1 C 0 C 0 s canFam3.chr1 35350437 247 - 122678785 taaataaaatctttttaaaaaaaTCTAAAACATAGTTAGGATATGACCTGGTATATAATAAATGCTCTAATGCTCTATTATTCATTTGttctttcactcaacaaatatccattgagtatctactatgtgccaagtccag-tttagatacttaggaaacacagatgaacaaaacaaaacaatcatttgccctcttgggccttctaatctagcaggtggagaacagacaatgaagactacactgaagtat i canFam3.chr1 I 240 I 1 e mm10.chr19 38103939 0 - 61431566 C e ponAbe2.chr9 64868934 0 + 135191526 C a score=1027864.000000 s hg38.chr9_GL383541v1_alt 156311 391 + 171286 aattatgcagtattttaaaaggcga-------t-aattgctacagaaataaaaatggagca-ggtgagggagttagggaatcgagaggagaatgtgggtggagttaactaatgtaaatagaagagtcacaacgaagcccattg-gaaggtagccttgaaaagagttgaggtagctcaccaagagcatatctggaaagcaatgttccaggtagaggggacagccattgcaaagccccataagtg--aaagcatgctcagtgtgtcctaggaacagcaaggcggctggtttagctatagcctagtgagctagggagacagtgctaggaaatga-cccagagaaataatggtaggccagctcatgg----------aggaccttgtaattaattagaagggctttggattttttttt s panTro4.chr9 68715737 391 + 137840987 aattatgcagtattttaaaaggcga-------t-aattgctacagaaataaaaatggagca-ggtgagggagttagggaatcgagaggagaatgtgggtggagttaactaatgtaaatagaagagtcacaacgaagcccattg-gaaggtagccttgaaaagagttgaggtagctcaccaagagcatatctggaaagcaatgttccaggtagaggggacagccattgcaaagccccataagtg--aaagcatgctcagtgtgtcctaggaacagcaaggcggctggtttagctatagcctagtgagctagggagacagtgctaggaaatga-cccagagaaataatggtaggccagctcatgg----------aggaccttgtaattaattagaagggctttggattttttttt i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57910970 386 - 122973662 aattatgcactattttaaaaggtga-------t-aattgctacagaaataaaaatggagca-ggtgagggagttagggaattgagaggagaatgtaggtggagttaactaatgtaaatagaagagtcacaacgaagcccattgagaaggtaaccttgaaaagagttgaggtagctcaccaacagcatatctggaaagcaatgttccaggtagaggggacagccattgcaaagccccataagtg--aaagcatgctcagtgtgtcctaggaacagcaaggcgactgctttagctatagcgtggtgagctagggagagagtgctaggaaatga-cccagagaaataatggtaggccagatcatgg----------aggaccttgtaattaattagaaggactttgaa------ttt i nomLeu3.chr1a I 108 C 0 s rheMac3.chr15 79840640 390 + 112192347 aattatgcagtattttaaaaggcaa-------t-aattgctacagaaataaaaatggcgca-ggtgagggagttagggaatcgagaggagaatgtgggtagagttaactaatgtaaatagaagagtcacaacgaagcccattgagaaggtaaccttgtaaagagttgaggtagctcactaagagcatatctggaaagcaatgtt-caggtagagg-gacagccagtccaaagccccataagtg--aaagcatgctcagtgtgtcctaagaacagcaaggcggctgctttagctatagtgtagtgagctagggagagagtgctaggaaatgt-accagagaaataatggtaggccagttcatgg----------acgatcttataattaattagaaggacttcggattttTTTTT i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80920080 390 + 112612857 aattatgcagtattttaaaaggcaa-------t-aattgctacagaaataaaaatggcgca-ggtgagggagttagggaatcgagaggagaatgtgggtagagttaactaatgtaaatagaagagtcacaacgaagcccattgagaaggtaaccttgtaaagagttgaggtagctcactaagagcatatctggaaagcaatgtt-caggtagagg-gacagccagtccaaagccccataagtg--aaagcatgctcagtgtgtcctaagaacagcaaggcggctgctttagctatagtgtagtgagctagggagagagtgctaggaaatgt-accagagaaataatggtaggccagttcatgg----------acgatcttataattaattagaaggacttcggattttttttt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76969853 391 + 107442819 AATTATGCagtattttaaaaggcaa-------t-aattgctacagaaataaaaatggcacA-GGTGAGGGAGTTAGGGAATCGAGAGGAGAATGTGGGTAGAGTTAACTAATGTAAATAGAAGAGTCACAACGAAGCCCATTGAGAAGGTAACCTTGTAAAGAGTTGAGGTAGCTCACTAAGAGCATATCTGGAAAGCAATGTT-CAGGTAGAGGAGACAGCCAGTCCAAAGCCCCGTAAGTG--AAAGCATGCTCAATGTGTCCTAAGAACAGCAAGGCGGCTGCTTTAGCTATAGTGTAGTGAGCTAGGGAGAGAGTGCTAGGAAATGT-ACCAGAGAAATAATGGTAGGCCAGTTCATGG----------ACGACCTTATAATTAATTAGAAGGacttcggattttttttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81233977 401 + 108555830 aattatgcagtattttaaaaggcaa-------t-aattgctacagaaataaaaatggcgca-ggtgaaggagttagggaatcgagaggagaatgttggtagagttaactaatgtaaatagaagagtcacaacgaagtccattgagaaggtaaccttgtaaagagttgaggtagctcactaagagcatatctggaaagcaatgtt-caggtagaagagacagccagtccaaagccccataagtg--aaagcatgctcagtgtgtcctaagaacagcaaggcagctgctttagctatagtatagtgagctagggagagagtgctaggaaatgt-accagagaaataatggtaggccaattcatggatgaccttgtatgaccttgtaattaattagaaggactgcgggttttttttt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111482761 399 - 210400635 aatcatgcagtattttaaaaggtgatcattggt-aattgctacagaactaaaaatggagca-ggtaagggagttagggaatcgagagaaggatgtgagtggagttaactaaggtaaatagaagagtcataatgaagtccactgagaaggtaaacttgaaaggag-tgaggtagcccaccaacggcatgtctggaaagcaatgttccaggtagaggggacagccagtacaaggccccataagtgaaaaaacatgcacagtgtgtcctaggaacagcaaggcggctgctttagctatagtgtagtgagctagggagagagtgctaggaga-aa-cccagagaaataatggtgggccagatcatgg----------aggaccttgtaattaattagaaggacttcagattttttttt i calJac3.chr1 C 0 C 0 s canFam3.chr1 35350685 381 - 122678785 aattatatag---gttagaaggtaa-------taaattgctacagaa--aaaaatagagtagggcaggggagcttggaaattgggaggaggatgtgaatggagttggcttatctaaatagtagaggcacaacagagctcattgagaaggtcacc-tggaaagagttgaggtagctgtcctagtgtgtatctgggaagaagtgtctcaagcagagggagcagccagtgggaagcccctaaagtg--aaagtatgctcactgtgtcccacagacaacaagg---ctggttttgcta-aacagagtgagttggggagggagtactaggaagtgagatcagagaaataatcgtgggccaggtcctgg--------------ccttttcatttgttaaaaagactttggattttaattt i canFam3.chr1 I 1 I 961 e mm10.chr19 38103939 0 - 61431566 C e ponAbe2.chr9 64868934 0 + 135191526 C a score=10787.000000 s hg38.chr9_GL383541v1_alt 156702 6 + 171286 tttttt s panTro4.chr9 68716128 6 + 137840987 tttttt i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57911356 6 - 122973662 tttttt i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79841030 6 + 112192347 TTTTTT i rheMac3.chr15 C 0 I 2809 s macFas5.chr15 80920470 6 + 112612857 tttttt i macFas5.chr15 C 0 I 1 s papAnu2.chr15 76970244 6 + 107442819 tttttt i papAnu2.chr15 C 0 I 3 s chlSab2.chr12 81234378 6 + 108555830 tttttt i chlSab2.chr12 C 0 I 22 s calJac3.chr1 111483160 5 - 210400635 ttttc- i calJac3.chr1 C 0 C 0 e mm10.chr19 38103939 0 - 61431566 C e canFam3.chr1 35351066 961 - 122678785 I e ponAbe2.chr9 64868934 0 + 135191526 C a score=915541.000000 s hg38.chr9_GL383541v1_alt 156708 546 + 171286 ccgagatagagtcttgctgtgtcgcccaggctggagtgctgtggtgtgatctcagctcactgcaacttccacctcccgggttcaagcaattctccctgcctcaggctcccgactagctgggattacaggtgcccgccaccatgctc-actcatttttgtattttttagtagagacagggttttgccgtgttggtcagactggtcttgaactcctgacctcaggtgatccatccaccttggcctcccaaagtgctgggattataggcatgagccactgtgcccagccaggactttggattttactttatttcaaatggaaagtcactagagagtgttgaacttaggagagaagcgatctgatctaattttataaggattgctctggctactgtgttgaggaaagactaggcgtgcaaatgaagcaagggtgaaatcaaagagccctgttagaggctactgcacataacccaggtgaacaatgatggtaaatttgactatgatagtggatttgactatgatggcacatttgaccagcaaccatggattg s panTro4.chr9 68716134 546 + 137840987 ccgagatacagtcttgctgtgtcgcccaggctggagtgctgtggtgtgatctcagctcactgcaacttccacctcctgggttcaagcaattctccctgcctcaggctcccgactagctgggattacaggtgcccgccaccatgctc-actcatttttgtattttttagtagagacagggttttgccgtgttggtcagactggtcttgaactcctgacctcaggtgatccatccaccttggcctcccaaagtgctgggattataggcatgagccactgtgcccagccaggactttggattttactttatttcaaatggaaagtcactggagagtgttgaacttaggagagaagcgatctgatctaattttataaggattgctctggctactgtgttgaggaaagactgggggtggaaatgaagcaagggtgaaatcaaagagccctgttagaggctactgcacataacccaggtgaactatgatggtaaatttgactatgatagtggatttgactatgatggcacatttgaccagcaaccatggattg i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57911362 544 - 122973662 ccaagatagagtcttgctgtgttgcccaggctggagtgcagtggcatgatctcagctcactgcaacttccacctactgggttcaagcaattctccctgcctcagcctcctgagtagctgggattacaggtgcccaccaccatgccc-actaatttttgtattttttagcagagacagggttttgccatgttggtcagactggtcttgaactcctgacctcaggtgatccatccaccttagccttccaaagtgctgggattacaggcatgacccaccgcgcccagccaggactttggattttactttacctcaaatggaaagtcattggagagtgttgaacttaggagagaagcgatctgatctagttttatcaggattgctctggctactgtgttgaagaaagactgggggtggaaatgaagcaagggtgaaatcaaagagccctgttagaggctaccgcacataacccaggtgagctatgatggtcaatttgac--tgatagtggatttgactatgatagcacatttgaccagcaatcatggattg i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80920477 545 + 112612857 ttgagatacagtcttactgtgtcgctcaggttggagtgcagtggtgtgatctcagctcactgcaacttccacctcccgggttcaagcaattctccctgcctcagcctcccgagtagctgggattgcatgtgtctgccaccatgccc-gctaatttctgtattttttagtagagacagggtttcgccatgttggtcagactggtcttgaactcctgaccttaggtgatccatccaccttggcctcccaaagtgctgggattgcaggcatgagccaccgtgcccagccaggactttggattttactttacctcaaatggaaagtcattggagagtgttcaacttaggagagaagtgatctgatttagttttataaggattgctc-agctactatgttgaggaaagactgggggtggaaacgaagcaagggtgaaatcagagagccctgttagaggctactgcacataacccaggtgaaatatgatggtaaatttgactatgatagtggATTTGACTATGATGGCACATTTGACCAACAACCAtggattg i macFas5.chr15 I 1 C 0 s papAnu2.chr15 76970253 543 + 107442819 ttgagat--agtcttgctgtgtcgctcaggctggagtgcagtggtgtgatctcagctcactgcaacttccacctcccgggttcaagcaattctccctgcctcagcctcccgagtagctgggattgcatgtgtctgccaccatgcct-gctaatttctgtattttttagtacagacagggtttcgccatgttggtcagactggtcttgaactcgtgacctcaggtgatccatccaccttggcctcccaaagtgctgggattgcaggcatgagccaccgtgcccagccaggacttTGGATTTTACTTTACCTCAAATGGAAAGTCATTGGAGAGTGTTGAACTTAAGAGAGAAGTGATCTGATTTAGTTTTATAAGGATTGCTC-GGCTACTATGTTGAGGAAAGACTGGGAGTGGAAACGAAGCAAGGGTGAAATCAGAGAGCTCTGTTGGAGGCTACTGCACATAACCCAGGTGAAATATGATGGTAAATTTGACTATGATAGTGGATTTGACTATGATGGCACATTTGACCAGCAACCATggattg i papAnu2.chr15 I 3 C 0 s chlSab2.chr12 81234406 545 + 108555830 ttgagatacagtcttgctgggtcactcaggctggagtgcagtggcatgatctcagctcactgcaacttccacctcccgggttcaagcaattctccctgcctcagcctcccgagtagctgggattgcatgtgtctgccactatgccc-gctaatttctgtattttttagtagagacacggtttcgccatgttggtcagactggtcttgaactcctgacctcaggtgatccatccaccttggcctcccaaagtgctgggattgctggcatgagccaccgtgcccagccaggactttggattttactttacctcaaatggaaagtcattggagagtgttgaacttaggagagaagtgatctgatttagttttataaggattgctc-ggctactacgttgaggaaagactggaggtggaaatgaagcaagggtgaaatcagagagccctgttagaggctactgcacataacccaggtgaactatgatggtaaatttgactatgatagtggATTTGACTATGATGGCACATTTGACCAGCAACCAtggattg i chlSab2.chr12 I 22 C 0 s calJac3.chr1 111483165 538 - 210400635 ccaagatggagtcttactgcgtcgccaaggctggagtgcagtggtgcgatctccgctcactggaa---ccgcctcccacttacaagcaatt----ctgcctcggccacccaaatagctgggattgcaggtgcccaccaccacacccggctaatttttgtattttttaatagagacagcatttcgccatgttgcccaggctggtcttgaactcctgacctctggtgatctgcccacctcgacctcccagcgtgctgggattacaggcatgggctaccgt-cctggccaggacgttggattttactttaagacaaatggaaattcactggagagtgttgaacttcggagagaagcaatctgatctagttttataagaatcgctctggcgactgtgttgaggaaagattgggggtgg-aatgaagcaagggtgaaatcagagagccctgtcagaggctactgcacataacccaggtgaactatgatggtaaaattgactatgatagcagatttcactatgatggtagatttgaccagccaccatggattg i calJac3.chr1 C 0 C 0 e mm10.chr19 38103939 0 - 61431566 C e canFam3.chr1 35351066 961 - 122678785 I e ponAbe2.chr9 64868934 0 + 135191526 C e rheMac3.chr15 79841036 2809 + 112192347 I a score=335705.000000 s hg38.chr9_GL383541v1_alt 157254 397 + 171286 aactgtgtattagcaatgagggtggtgataagtggtcaaatcctggatatattttgaaagccaagccacagaatttcatgatggattagatgagtataagagaaagagCAACGTTCTGAGTAGCCTGATAAAACCTtgcttgt---gttcaagaaacccttattctactgaaaaatggcaaagtgtaagggtagtgatgctagcatattgttataattgtcttattttattattcc---ttgttaatctcttacttggcctaatttataaattaaacttcatcataagtatgtatgtataggaaaaaatatatagtatacatagggttcagtagtatcagcagtttcaggcatccaccagggatcttagaacatatccctcaaggataagggggaactactgt s panTro4.chr9 68716680 400 + 137840987 aactgtgtattagcaatgagggtggtgataagtggtcaaatcccggatatattttgaaagccaagccacagaatttcatgatggattagatgagtataagagaaagagCAACGTTCTGAGTAGCCTGATAAAACCTtgcttgt---gttcaagaaacccttattctactgaaaaatggcaaagtgtaagggtagtgatgctagcatattgttataattgtcttattttattattccttgttgttaatctcttacttggcctaatttataaattaaacttcatcataagtatgtatgtataggaaaaaatatatagtatacatagggttcagtagtatcagcagtttcaggcatccaccagggatcttagaacatatccctcaaggataagggggaactactgt i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57911906 397 - 122973662 aactgtgtattagcaatgagggtggtgataagtggtcaaatcctggatatattttgaaagccaagccacagaatttcatgatggattagatgagtataagagaaagagCCACGTTCTGAGTAGCCTGATAAAACCTtgcttgt---gttcaagaaacccttattctactaaaaaatggcaaagcataagggtagtgatgctagcatattgttataattgtcttattttattattcc---ttgttaatctcttacttggcctaatttataaattaaacttcatcataagtatgtatgtataggaaaaaatatatagtatacatacggttcagtagtttcagcagtttcaggcatccaccagggatcttagaacatatccctcaaagataagggggaactactgt i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 81234951 400 + 108555830 aactgtgtagtagcaatgagggtgatgataagtggtcaaatcctggatatactttgaaagccaagccacagaatttcatgatggattagatgagtataaaagaaagagCAATGTTCTGAGTAGCCTGATAAAACCTCgcttgt---gttcaagaaacccttattctactgaaaaatgccaaagtgtaagggtagtgatgctagcatattgctataactgtcttattttattattccttgttgttaatctcttactgggcctaatttataaattaaacttaatcataagtatgtatgtatacgaaaaaatacatagtatacatagggttcagtagtatcaggagtttcaggcatccaccagggatcttagaacatatccctcaaggataaaggggaactactgt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111483703 400 - 210400635 gactgtatagtggcaatgagggtggtggtaagtggtcaaatcctggatatattttgaaagctgagccacagaatttcatgatggattagatgagcataagaaaaagagCAACGTTCTGAGTAGCCTGATAAAACCTGGCTTGTTGAACAcaagaaactcttattctactgaaaaatggcaaagcataaggatagtgatgccagcat-ttgttataattatct--tttttttattccttgttgttaatctcttactggacatcatttataaattaaacttcatcgtaagtatgtatgtacaggaaaaaatatatagtatacatagggttcagtagtatcagcagtttcaggcatctaccagggatcttagaacatatccctcaaggataagggggaactactgt i calJac3.chr1 C 0 C 0 e mm10.chr19 38103939 0 - 61431566 C e canFam3.chr1 35351066 961 - 122678785 I e ponAbe2.chr9 64868934 0 + 135191526 C e rheMac3.chr15 79841036 2809 + 112192347 I e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=89527.000000 s hg38.chr9_GL383541v1_alt 157651 88 + 171286 agtttgccagggcttccataacaaaatatcccagac-----tgggtggcttaaacattagaaatttgttttctcacaggtctggcagcttaaa s panTro4.chr9 68717080 88 + 137840987 agtttgccagggctgccataacaaaatatcccagac-----tgggtggcttaaacattagaaatttgttttctcacagttctggcagcttaaa i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57912303 88 - 122973662 agtttgccagggctgccataacaaaatatcccagac-----tgggtggcttaaacattagaaatttattttctcacagttctggtggctgaaa i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 81235351 87 + 108555830 agtttgccagggctgccataacaaaatatcccagac-----tgggtggcttaaacaatagacatttattttctcacagctctggaggct-aaa i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111484103 88 - 210400635 agtttgccagggctgccgtaacaaaataccacagac-----tgcatggcttaaacaacagaaatgtattttctcacagttctgcaggctgaaa i calJac3.chr1 C 0 C 0 s canFam3.chr1 35352027 93 - 122678785 agcttgccagtgctgccttaataaaatacctcaaatactggtgggcagcttaaacaatagaaatttattttctcatgatccaggaggcgagaa i canFam3.chr1 I 961 C 0 e mm10.chr19 38103939 0 - 61431566 C e ponAbe2.chr9 64868934 0 + 135191526 C e rheMac3.chr15 79841036 2809 + 112192347 I e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=945674.000000 s hg38.chr9_GL383541v1_alt 157739 904 + 171286 -----gtccaagatcaagatgtcggtagggttggttc-cttctgaaatttctctccttggcttgcagatggctgccttct------tgcttcacatggcctttcctctgtgccagtgcacccccgatatgtatcttcttgtaagttcaccagtcataatgaattacagcccaccctaaca-------------------------------------------------------------------------------------------atcccattgtga-----------------------------------------cttaattacctcctaaaaggttctatctccaaatacagtcac----attct--agtacgtg-ggttagggcttcaacatacctctttggagaagacacaattgaaccca-----------CTCCCAGGATTTAGGGCA--ATGGGTTGAACATTGAAGGAACAGGGTAAACTCTT-------AAGTTAAATGGCTGACAACCAAGCCCTG-TCCTGCTCCTCATGTCATTATGCTAAAATAATGTTATAGTCTGAGCTTGCTTGACTAGTAGACCATGTCCTACCTT-CTCCTCATAAATACACAG-TCTATGAAAATCTAACAAAAGCACATATAGTAGATATTAAATTGCTCCTAATTCTACTCCTGTATTTACATTATTT-CTGGGTTATGTGGACACACTTTAGCTAACATAGTATTGCTTTGTCTAAAGAAA-ATAATTTGGTTGTGTTTGCTTTGTCTTCTTAAAAACTTTGAAAGATGCTTCAGCTGCCTCGGGTTATACTTCATAGCAAAAATAGAGTGCATGTTAT--TATATGAATATATTGTGGAAAATTTTGAATGCACAAA---CTTAGTGTGTTCAACATTTATTTTGAGTGAATATTTGACATATTAAATAAAACTCTCTGGTGCACAACACAGAAAATTCTG----ATTTTTAAAGTAAATTTTTTCTAGGGCCTGCCTTCTTT---ATTCTCTGTTTCATTTGCTTCAATATAGATTTTCAAAAATTTCTCAAGACACCTTCCACTTTTCT s panTro4.chr9 68717168 900 + 137840987 -----gtccaagatcaagatgtcggtagggttggttc-cttctgaaatttctctccttggcttgcagatggctgccttct------tgcttcacatggcctttcctctgtgccagtgcacccccgatatgtatcttcttgtaagttcaccagtcataatgaattacagcccaccctaaca-------------------------------------------------------------------------------------------atcccattttga-----------------------------------------cttaattacctcctaaaaggttctatctccaaatacagtcac----attct--agtacgtg-ggttagggcttcaacatacctctttggagaagacacaattgaaccca-----------CTCCCAGGATTTAGGGCA--ATGGGTTGAACATTGAAGGAACAGGGTAAACTCTT-------AAGTTAAATGGCTGACAACCAAGCCCTG-TCCTGCTCCTCATGTCATTATGCTAAAATAATGTTATAGTCTGAGCTTGCTTGACTAGTAGACCATGTCCTACCTT-CTCCTCATAAATACACAG-TCTATGAAAATCTAACAAAAGCACATATAGTAGATATTAAATTGCTCCTAATTCTACTCCTGTATTTACATTATTT-CTGGGTTATGTGGACACACTTTAGCTAACATAGTATTGCTTTGTCTAAAGAAA-ATAATTTGGTTGTGTTTGCTTTGTCTTCTTAAAAACTTTGAAAGATGCTTCGGCTGCCTCGGGTTATACTTCATAGCAAAAATAGAGTGCATGTTAT--TATATGAATATATTGTGGAAAATTTTGAATGCACAAA---CTTAGTGTGTTCAAC----ATTTTGAGTGAATATTTGACATATTAAATAAAACTCTCTGGTGCACAACACAGAAAATTCTG----ATTTTTAAAGTAAATTTTTTCTAGGGCCTGCCTTCTTT---ATTCTCTGTTTCATTTGCTTCAATATAGATTTTCAAAAATTTCTCAAGACACCTTCCACTTTTCT i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57912391 904 - 122973662 -----gtccaagatcaagatgtcggtagggttggttc-cttctgaaatttctctccttggcttgcagatggctgccttct------tgcttcacgtggcctttcctctgtgccagcgcacccccgatatttatcttcttataggttcaccagtcataatgaattacagcccaccctaaca-------------------------------------------------------------------------------------------atcccattttga-----------------------------------------cttaattacctcctaaaaggttctatctccaaatacagtcac----gttct--agtacgtg-ggttagggcttcaacatacctctttggagaagacacaattgaaccca-----------CTCCCAGGATTTAGGGCA--ATGGGTTGACCACTGAAGGAACAGGGTAAACTCTT-------AAGTTAAATGGCTGACAGCCAAGCCCTG-TCCTGCTCCTCATGTCATTATGCTAAAATAATGTTATAGTCTGAGCTTGCTTGATTGGTAGACCATGTCCTACCTT-CTCCTTATAAATACACAG-TCTATGAAAATCTAACAAAAACACATATAGTAGATATCAAATTGCTCCTAATTCTACTCCTGTATTTACATTATTT-CTGGGTTATGTGGACACACTTTAGCTAACATAGTATTGCTTTGTCTAAAGAAA-ATAATTTGGTTGTGTTTGCTTTGTCTTCTTAAAAATTTTGAAAGATGCTTCAGCTGCCTCGGGTGATACTTCATAGCAAAAATAGAGTGCATGTTAT--TATATGAATATATTGTGGAAAATTTTGAATGCATAAA---CTTAGTGTGTTCAACATTTATTTTGAGTGAATATTTGACACATTAAATAAAATTATCTGGTGCACAACATAGAAAATTCTG----ATTTTTAAAGTAAATTTTTTCTAGGGTCTGCCTTCTTT---ATTCTCTGTTTCATTTGCTTCAATATAGATTTTCAAAAATTTCTCAAGACACCTTCCACTTTTCT i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 81235438 892 + 108555830 -----gtccaagatgaagatgtcggtagggttggttc-cttctgaaatttctctccttggcttacagatggctgcgttct------tgcttcatgtggcctttcctctgtgccagtgtacccccaatatgtatcttcttgtaagttcaccagtcataatgaattacagcccaccctaaca-------------------------------------------------------------------------------------------gtctcattttga-----------------------------------------cttaattacctcctaaaaggttctgtctccaaatacagtcac----attct--agtacatg-ggttagggtttcaacatacctcttttgagaagacacaactgaaccca-----------CTCCCAGGATTTAGGGCA--ATGGGTTGAACATTGAAGGAACAGGGTAAACTCTT-------AAGTTAAATGACTGACAACCAAGACCTG-TCCTGCTCCTCATGTAAATATGCTAAG--------------TGAGTTTGCTTGACTGGTAGACCATGTCCTACCTT-CTCCTCATAAATACACAG-TCTATGAAAATCTAACAAAAGCACATATAGTAGATATTAAATTGCTCCTAGTTCTACTCCTATATTTACATTATTT-CTGGGTTATGTGGACACAATTTAGCTAACACAGTATTGCTTTGTCTGAAGAAA-ATAATGTGGTTGTGTTTGCTTTGTCTTCTTAAAAACTTTGAAAGATGCTTCAGCTGCCTCAGGTGAAACTTCAGAGCAAAAATTGAGTGCATATTGTTATATATGAATATATTGTGGAAAAATGTGAATGCATAAA---CTTAGTGTGTTCAACATTTATTTTGAGTGAATATTTGACACATTAAATAAAATTCTCTGGTGCACAACATAGAAAATTCTG----ATTTTTAAAGTAAATTTTTTCTAGGGTCTGCCTTCTTT---ATTCTCTATTTCATTTGCTTCAATATAGATTTTCAAAAATTTCTCAAGACACCTTCCACTTTTCT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111484191 860 - 210400635 -----gtccaagatcaagatgtgggtagggttggttc-cttctgagatttctctccttggcttgcagatggctgccttcc------tgcttcacgtggcctttcctctgtgccagtgcacccctgatatgtaccttcttataaattcaccagtcataatgaattacagcccaccctaaca-------------------------------------------------------------------------------------------ctcct----------------------------------------------------attacatcctaaaaggttctatctccaaatagagtcactagaattct--agcatgtg-ggttagggcttcgacat-----------------ataaTTGAACCCA-----------CT-------TTTAGGGCA--ATAGATTGAACATTCAAGGAACAGGGTAAACTCTT-------AAGTTAAATGGCTGACAACCAAG--------------CTCATGTCATTATGCTAAAATAATGTTACAGTCCGAGCTTGTTTGACTGGTAGACCATATCCTGCCTT-CTCCTCATTAACACACAG-CCTATGATAATCTAACAAAAGCACATGCAGTAGATATTAAGCTGCTCCTAATTCTACTCCTGTATTTACATTATTT-CTGGGTTATGTGGATACATTTTGGCTAAAATAGTATAGCTTTGTCTAAAGAAA-ATAATGTGGTTGTGTTTGCTTTGTCCTCTTAAAAACTTTGAAGGATGCTTCAGCTGCCT-GGGTGAAACTTCATAGCAAAAATTGAGTGCATGTTGT--TATGTGAATATACTGCAGAAAAATTTGAATGCATAAACTTCTTAGAGTGTTCAACATTTATTTTGAGTGAATGCTTGACACATTAAATAAAAGTCTCTGGTGTACAACATA-AGAATTCTG----ATTTTTAAAGTAAATTTTTTCTAGGGTCTGCCTTCTTT----TTCTTTATTTCATTTGCTTCAATACAGATTTTCAAAAATTTCTCAAGACACTTTCCACTTTTCT i calJac3.chr1 C 0 C 0 s mm10.chr19 38103939 828 - 61431566 -----gtccaagatcaaggtatccacatggttgcttt-cctc---------------tggcttgcaaatggctatcttctgcagtgtgc-acacatggccctccttctgtgacaacacatccctcatgtctctgtttttataa------cacttgtaccaaatggagatccaccctaaca-------------------------------------------------------------------------------------------atcctcttttaa-----------------------------------------ttcagtttcatcttgagaagcccagtctctaaatatagcccc----gctct--gaggaatgaggttagggcttcatcacatgtgttttggagagaagcaacttaacccatagcaGACTCCCTCCCAGGAGTCAGTGCC--ATGGAATGGATATCCAAAGAGAAGGAAAAATTCTTTC-----ATGTTAAGTGGGTGACAGCCCAGGCCTGCTCCTGGGCCTTGTGGCTTTGTGCTA-----------CACTCTAGGCTTGTCTGACTCATAGGATATGCTCCACCTC-CTCCACACACACTCAAAACTCTATGAAATTCTATCAAAAACATGTGCAATATGTATTAAATAACTCATAACTCTAGTCCTTTACGGACATCATTA-CC-GGCTATGGGAACCTATGTTAATTAGCTTGG-GTGGCTTTGTTTAAAG----ATGGTGTGGTTAGGTTTCCTTTGTGTTTTTGAAAACTTATAAAACTGTGTCATCTGGCTAGGGTGAAACTTCCCAGCAAG-------------------ACCATGAATACA---------------AATGTTT------CTTACTGAACTCCATCTTTAATCTGAATGAATTCTAGACACATGAAATGAACTTCTCTGGTGCACAGTGTAGAGAATGTTGTTGttttttttaaataaat--------------------------------tatttCACCTGCTTCAATATTAAATTCCAAAAGATTCTCAAGATGCCGTTCAGATTTTT i mm10.chr19 C 0 I 4 s canFam3.chr1 35352120 996 - 122678785 gtccaatccaagctcaaggtattgagaggattggtttgtttctgaggcttctctgctcagcttgcagatgcccttcttccggtggtggcctcacatggttggccctcggtctttgtg--------gtctgtgtcct-------gagctttagtcat--tggattaggacccaccctaaCatttattcatgagagacacacagagagagacagagacacaggcagaaggagaagcaggttcccgatgcaggactcaatcccaggacccgagcatcacaccctgggccaaaggtagacgctcaaccactgagccacccaggtgccccctaactacctttttaaaagagctatctgcaaatacagtcac----attctgaagtaccag-agtgagggctttagtgtgtgaattttagaaggatgcagtacaacacataacaGAA---TTCCCTGGAGTTAGTGCACGGTGTGCTGAATCCTGAGGGAGCAAGGTAAGCTCTTCTTCCAGAAAATGAATGGT-----------CCCTG-TCCTGCCCCTCTCAACTTTCTAATAAGATAA--------TTCAAAGTTGTTTAATTTGCATACCACATTCTACCCCGTTCCCTCCACACACAAAA-TCCGTGATAACCTAGCAAAAGCACATTCAGTAGATCTTCAATTACTCATAATTTTCCTCCTTTATTTACCTTTTTTGCTGATTTATGGGGG-ATGCATTGGTTAACTGGGTGTGGCTTTGTGTTAAGAAATATGATATGATAGTGTTTGCTTTGTCT--CTGAAAACTTTGAAGGATGTTTCAGCTGGCT-GGATGTTTCT-----GCAAAGAT----------------GAT------------------------AATGCAAAAACATCTTTGTGTGCCCACTATTCACTCCCAGTAAATGCTTTATTCATTAAATGAAATCCTCTGATGCACAATCAAGAGAATTTTG-ATTATTTTTTCAGCACACTGCTTCCAGGGTCTGCCTTCTTCTTCATTCTTTATCTTACCTGTTTCAATGCAAATTTTTAGAAAGTTCTCAAGGCACCTTTCAATTTTCT i canFam3.chr1 C 0 C 0 e ponAbe2.chr9 64868934 0 + 135191526 C e rheMac3.chr15 79841036 2809 + 112192347 I e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=255410.000000 s hg38.chr9_GL383541v1_alt 158643 152 + 171286 -----AACTAACTCTTTTACCACTTATATC-TTTTTATTCCCATGTACAACAATGTAAATAAGAAAAACAAGTTTTGCTACACTGTGCCCA-GGGTACCTACAAA--TATAGCATTAGGTTGAAGGTGTTTTGTTCTTGTTCTTGAAATTACTTTAATAAC s panTro4.chr9 68718068 152 + 137840987 -----AACTAAATCTTTTACCACTTATATC-TTTTTATTCCCATGTACAACAATGTAAATAAGAAAAACAAGTTTTGCTACACTGTGCCCA-GGGTACCTACAAA--TATAGCATTAGGTTGAAGGTGTTTTGTTCTTGTTCTTGAAATTACTTTAATAAC i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64868934 152 + 135191526 -----AACTAAATCTTTTACCACTTATATC-TTTGTATTCCCATGTACAACAATGTAAATAAGAAAAACAAGTTTCGCTACACTGTGCCCA-GGGTACCTACAAA--TATAGCATTAGGTTGAAGGTGTTTTGTTCTTGTTCTTGAAATTACTTTAATAAC i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57913295 152 - 122973662 -----AACTAAATCTTTTACCACTTATATA-TTTTTATTCCCATGTACAACAATGTAAATAAGAAAAACAAGTTTTGCTACACTGTGCCCA-GGGTACCTACAAA--TAGAGCATTAGGTTGAAGGTGTTTTGTTCTTGTTCTGGAAATTACTTTAATAAC i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 81236330 152 + 108555830 -----AACTAAATCTTTTACCATTTATATC-TTTTTATTTCCATGTACAACTATGCAAATAAGAAAAATAAGTTTTGCTACACTGTGCCCA-GGGTACCTACAAA--TATAGCATTAGATTGAAGGTGTTTTGTTCTTGTTCTTGAAATTACTTCAGTAAC i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111485051 151 - 210400635 -----AACTAAATCGTTTACCGCTTATGTC-TTTTCATTCCCATGTACAACAATGTAAATAAG-AAAATAAATTTTGCTACACTGTGCCCAGGGGTACCTACAAA---ATAGCATTAGGTTGAAGGTGTTTTGTTCTTGTTCTTGAAATTACATTAATAAC i calJac3.chr1 C 0 C 0 s mm10.chr19 38104771 135 - 61431566 -----AGTAAAATATTTT--TGGATCTATC-TTTTTATTCCTGTGCATAGCAATGCAAGCAAG-AAAACAAATTCTACTATACTATGCCCA-CGGTACCTATAGATATATAGCATTGGGT--AAGG------GCTCTC--------AATTACTTTAATGAC i mm10.chr19 I 4 I 30 s canFam3.chr1 35353116 147 - 122678785 AACTAAAGAAAATCTTTTACAGGTTATATCTTTTTTATTCCTATCTACAGTAATGCCGGCGAG-GCAGCAAATTTTGCCAT-----------GGGTACCTACATA--TATGGAATTGGATTAAAGATGATTTGGTTTTGTTCTTAGAATTACTTTAGCAAT i canFam3.chr1 C 0 C 0 e rheMac3.chr15 79841036 2809 + 112192347 I e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=339621.000000 s hg38.chr9_GL383541v1_alt 158795 314 + 171286 TAATTTTCTAGGGAAATATAATAT----CAGTGATTATTTAcagtagttcccccttatctgcagggcatatgttcctcgatgcctagtggatgcctgaaaccaaaggcagtattaaaccctatatacaatatattttt-ctcatacatacatacctataataaagcttaatctataaattaggcacaataagacactaacaatgaccaat-----aatagaataattaca-atatattgttctcaatttcacagacagaagatttgttcctactgtagatctcagcaacctcagatt---tttcct------------ttccttgttaagtcacaacctt s panTro4.chr9 68718220 314 + 137840987 TGATTTTCTAGGGAAATATAATAT----CAGTGATTATTTAcagtagttcccaattatctgcagggcatatgttcctcgatgcctagtggatgcctgaaaccaaaggcagtattaaaccctatatacaatatattttt-cccatacatacatacctataataaagcttaatctataaattaggcacaataagacactaacaatgaccaat-----aatagaataattaca-atacattgttctcaatttcacagacagaagatttgttcctactgtagatctcagcaacctcagatt---tttcct------------ttccttgttaagtcacaacctt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64869086 311 + 135191526 CGATTTTCTAGGGAAATATAATAT----CAGTGATTATTTAcagtagttcccccttatctgcagggcatatgttcccagatgcctagtggatgccagaaaccaaaggcagtattaaaccctatatacaatatattttt-cccatacatacatacctataataaagcttaatctataaattaggcacaataagacactaacaatgaccaat-----aatagaataattaca-atatattgttctcaatttcacagac---agatttgttcctactgtagatcttagcaacctcagatt---tttcct------------ttccttgttaagtcacaacctt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57913447 311 - 122973662 TGATTTTCTAAGGAAATATAATAT----CAGTGATTATTTAcagtagttcccccttatctgcagggcatatgttcctagatgcctagtggatgcttgaaaccaaaggcagtattaaaccctatatacaatatatttttccccatacatacatatctataataaagcttaatctataaattaggcataataggacactaacaatgaccaat-----aatagaataattaca-atatattgttctcaatttcacaga----agatttgttcctactgtagatcttagcaacctcagatt---tgtcct------------ttccttgttaagtcacaacctt i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 81236482 306 + 108555830 TGATTTTCTAGGGAAATATAATAT----CAGTGATTATTTAcagtagttcccccttatctgcagggcatatgctcctagatgtctagtggatgcctgaaaccaaaagcagtattaaaccctacatacaatatattttttcccatacacacatatctataatacagtttaatctataaattatgcac------acactaaaaatgaccaat-----aacagaataactaCA-ATATATTA---Tcaatttcacagacagaagatttgttcctactgtagatcttagcaacctcaggtt---tttcct------------ttccttgttaagtcacaacctt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111485202 297 - 210400635 TGATTTTCTAGGGA-----AATAT----CAGTGATAATTTAcagtcatttccccttatcttcagggcatatgttcctagaggcct------------------aaggcagtactgaaccctatatgcaatatcttttttcacatacatgcatacctatcatagagcataatctatcagataggcacaacaagacactaataatgaccaataataaaatagaataattaca-atatattattcataatttcatatacagaagatttgttcctattgtagatcttagcaacctcagatt---tgtcct------------tttcttattaagtcatgacttt i calJac3.chr1 C 0 I 319 s canFam3.chr1 35353263 244 - 122678785 TGCTTTACTAGGGAAAT--AATGTTAGCTagtgatcatttatggaacatttacc--atgtgcaggcactatg---ctggggactt--------------------------------------------tatatCTtgtcttagtca-----------atttgagct---gctataatgaaagtaccacag---actg-----------------gatggtgtaaacaaacatttttttctctcaattctggaggttgggaagt-----cta----agatcaaggcacccacagattgggtgtcttgtgagagcctgcttccttgttcatagacagcc-- i canFam3.chr1 C 0 C 0 e mm10.chr19 38104906 30 - 61431566 I e rheMac3.chr15 79841036 2809 + 112192347 I e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=23052.000000 s hg38.chr9_GL383541v1_alt 159109 13 + 171286 tcaccttttcact s panTro4.chr9 68718534 13 + 137840987 tcaccttttcact i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64869397 13 + 135191526 tcaccttttcact i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57913758 13 - 122973662 tcaccttttcact i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 81236788 13 + 108555830 tcaccttttcact i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111485818 13 - 210400635 tcaccttttcact i calJac3.chr1 I 319 C 0 s canFam3.chr1 35353507 11 - 122678785 --accttgtcact i canFam3.chr1 C 0 I 403 e mm10.chr19 38104906 30 - 61431566 I e rheMac3.chr15 79841036 2809 + 112192347 I e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=489818.000000 s hg38.chr9_GL383541v1_alt 159122 389 + 171286 tgaagcactttatggcttctctttgccatatctaaactgtcagcatcactactcttgcactttggggccataattaaataaaataaaggttacttggacacaagatctgtgatactgtgacagtcagtctgataacaaagatgg---ctaagtgactcacaggcagagagtgtagacagcatggagacattggacaaagagatgatttgtgttctgcttgggacagagtggaacagtggaagatttcatcatgctactcacaacagaacatagtttaaaacttatgaattgtttatttctggaactttccatgtaatatttttgggccacagctgactgtgggtaaccgaaaccatggaaggcaaaaac--agataaagggggcactactAtat s panTro4.chr9 68718547 389 + 137840987 tgaagcactttatggcttctctttgccatatctaaactgtcagcatcactactcttgcactttggggccataattaaagaaaataaaggttacttggacacaagatctgtgataccgtgacagtcagtctgataacaaagatgg---ctaagtgactcacaggcagagagtgtagacagcatggagacattggacaaagagatgatttgtgttctgcttgggacagagtggaacagtggaagatttcatcatgctactcacaacagaacatagtttaaaacttatgaattgtttatttctggaactttccatgtaatatttttgggccacagctgactgtgggtaaccgaaaccatggaaggcaaaaac--agataaagggggcactactAtat i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64869410 391 + 135191526 tgaagcactttatggcttctctttgccatatctaaattgtcagcatcactactcttgcactttggggccacaattaaataaaataaaggttacttggacacaagatctgtgataccgtgacagtcagtctgataacaaagatgg---ctaagtgactcacaggcagagagtgtagacagcatggagacattggacaaagagataatttgtgttctgcttgggacagagtggaacagtggaagatttcaccatgctactcacaacagaacatagtttaaaacttatgaattgtttatttctggaaatttccatttaatatttttgggccacagctgactgtggataaccgaaaccatggaaggcaaaaacgtagataaagagggcactactAtat i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57913771 390 - 122973662 tgaagcactttatggcttctctttgccatatctaaattgtcagcatcactactcttgcactttggggccataattaagtaaaataaaggttacttggacacaagaactgtgatactgtga----cagtctgataaccaagatggctactaagtgactcacaggcagagagtgtagacagcatggacacattggacaaagagatgatttgtgttctgcttgggacagagtggaacagtggaagatttcatcatgctactcacaacagcacatagtttaaaacttatgaattgtttatttctggaactttccatttaatatttttgggccacagctgactgtgggtaaccgaaaccatggaaggcaaaaacgtagataaagggggcactactAtgt i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 81236801 393 + 108555830 tgaagcactttatggcttctctttgccgtatctaaattgtcagcatcgctactcttgcactttggggccatcattaagtaaaataaaggttacttggacacaagaactgtgataccgtgacagtcaatctgataaccaagatggctactaagtgactcacaggcagagagtgtagac-gcatggacacattggacaaagagatgatttgtgtcctgctcgggacagagtggaacagtggaagatttcatcatgctactcacaacagtacatagtttaaaactgatgaattgtttatttctggaattttccatttaatatttttgggccacagctgactgtgggtaaccgaaaccatggaaggcaaaaacatagataaagggggcactactAtat i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111485831 394 - 210400635 tgaagcactttatgacttctctttgccatatctaaattttcaacatcactactcttgcactttggggccattattaagtaaaataaaggttacttggactcaagtactgtgataccatgacagtcaatctgataactaagatggctactaagtgacccacaggcaaagaatgtaaacaacatgggcacgttggacaaagggatgatttatgtcctgctcaagacagaatggaacagtgcaagatttcatcatgctacttacaacagcacatagtttaaaactaatgaattgtttatttctggaattttctatttaatatttttgggccacagctgactgtggataaccaaaaccatggaaagtgaaaacgtagataaagtggggactactAtac i calJac3.chr1 C 0 C 0 e mm10.chr19 38104906 30 - 61431566 I e canFam3.chr1 35353518 403 - 122678785 I e rheMac3.chr15 79841036 2809 + 112192347 I e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=901005.000000 s hg38.chr9_GL383541v1_alt 159511 604 + 171286 tggacatttaccacgtgtagg-cactgcgctaggaacctcaacatcctttccacaacctgtaaggtaagtgaaagttcccacgttttgcaggaggaagctgaagtttagggaagttaagtgcctttccagggccagcacttactggtggagcagtaactggtggagcaaagacttaatctcacatttgtct-ggttctaatggctatatattctgcctacactgcctcactAGGGTTTCCAAACCTACATGCTACTAAGAGACCACACATGGCCTGGAACAGCTGTGACAACTTATATGTGAAAAGCACAGTTTTTCATA---------------AACCAAAGACCCTTCACACCAAAGCAGAGTGTCTTCTCCTAGAAA--ATACAATGA-----TTGGTATTTTGGAACATTCCTAGAAATTGATCCAGCAGAAAACATCTAAACTTTTTCTGATCTATTTCTAGTGTCTGTATAACAATGTTGTCAGTGTAACCCCAGGGCTGTAGGCCACACACTTATTATGTATCCTACACCCCACAAAAGAGTGGTTTTCCTTTGTCCTAGCCTCTAATGGTGTGAGCTCAATGTGGCTG--ATGTATTGGCACTCAGATTGCAATGTGACAAG s panTro4.chr9 68718936 604 + 137840987 tggacatttaccacgtgtagg-cactgtgctaggaacctcaacatcctttccacaacctgtaaggtaagtgaaagttcccacgttttgcaggaggaagctgaagcttagggaagttaagtgcttttccagggccagcacttactggtggagcagtaactggtggagcaaagacttaatctcacatttgtct-ggttctaatggctatatattctgcctacactgcctcactAGGGTTTCCAAACCTACATGCTACTAAGAGACCACACATGACCTGGAACAGCTGTGACAACTTATATGTGAAAAGCACAGTTTTTCATA---------------AACCAAAGACCCTTCACACCAAAGCAGAGTGTCTTCTCTTAGAAA--ATACAATGA-----TTGGTATTTTGGAACATTCCTAGAAATTGATCCAGCAGAAAACATCTAAACTTTTTCTGATCTATTTCTAGTGTCTGTATAACAATGTTGTCAGTGTAACCCCAGGGCTGTAGCCCACACACTTATTATGTATCCTACACCCCACAAAAGAGTGGTTTTCCTTTGTCCTAGCCTCTAATGGTGTGAGCTCAATGTGGCTG--ATGTATTGGCACTCAGATTGCAATGTGACAAG i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64869801 592 + 135191526 tggacatttaccatgtgtagg-cactgtgctaggaacctcaacatcctttccacaacct-taaggtaagtgaaagttcccacgttttgcaggaggaagctgaagcttagggaagttaagtgcctttccagggcca-cac----------agcagtaactggtagagcaaagacttaatctcacatttgtct-ggttctaatggctatatattctgcctacactgcctcactAGGGTTTCCAAACCTACATGCTACTAAGAGACCACACATGACCTGGAACAGCTGTGACAACTTGTATGTGAAAAGCACAGTTTTTCATA---------------AACCAAAGACCCTTCACACCAAAGCAGAGTGTCTTCTCTTAGAAA--ATACAATGA-----TTGGTATTTTGGAACATTTCTAGAAATTGATCCAGCAGAAAACATCTAAACTTTTTCTGATCTATTTCTAGTGTCTGTATAACAATGTTGTAAGTGTAACCCCAGGGCTGTAGCCCACACACTTATTATGTATCCTAAACCCCACAAAAGAGTGGTTTTCCTTTGTCCTAGCCTCTAATGGTGTGAGCTCAAAGTGGCTG--ATGTATTGGCACTCAGATTGCAATGTGACAAG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57914161 593 - 122973662 tggccatttaccatgtgtagg-cactctgctagggacctcaacatcctttccacaacctgtaaggtaagtgaaagttcccacattttggaggaggaaactgaagcttagggaagttaagtgcctttccagggcca-cgc----------agcagtaactggtagagcagagacttaatctcacatttgtct-ggttctaatggctatatattctgcctacactgcctcactAAGGTTTCCGAACCTACATGCTACTAAGAGACCACACATGACCTGGAACAGCTGTGACAACTTATATGTGAAAAGCACAGTTTTTCATA---------------AACCAAAGACCCTTCACACCAAAGCAGAGTGTCTTCTCTTAGAAA--ATACAATGA-----TTGGTATTTTGGAACATTCCTAGAAATTGATCCAGCAGAAAACATCTAAGCTTTTTCTGATCTATTTCTAGTGTCTGTATAACAATGTTATAAGTGTAACCCCAGGGCTGTAGCCCACACACTTATTATGTATCCTAAACCCCAAAAAATAGTGGTTTTCCTTTGTCCTAGCCTCTAATGGTGTGAGCTCAATGTGGCTG--ATGTATTGGCACTCAGATTGCAATGTGACGAG i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 81237194 591 + 108555830 tggatatttgccatatgtagg-cactgtgctgggaatctcaacatcctttctacaacctgtaaggtaagtgaaagttcccatgtttcagaggaggaagcagaagcttagggaagttaagtgcctttccagggcca-cac----------agtagtaactagtagagcagagacttaatctcacatttgtctgggttctaatggctatatattctgcctacactgcctcactAGGGTTTCTGAACCTACATGGTACTAAGAGACCACACATGACCTGGAACAGCTGTGACAACTTATACGTGAAAAGCACAGTTTTTC-TA---------------AACCAAAGACCCTTCACACCAAAGCAGAGCGTCTTCTCCTAGAAA--ATACAATGA-----TTGGTATTTTGGAACATTCCTAGAAATTGATCCAGCAGAAAACATC-AAACTTTTTCTGATCTATTTCTAGTGTTTATATAACAAGGTTGTACGTGTAACCCCAGGG-TGTACCCCACACACTTATGATGTATCCTAAACGCCACAGAGGAGTGGTTTTCCTTTGTCCTAGCCGCTAATGGTGTGAGCTCAATGTGGCTG--ATGTATTGGCACTCAGATTGCAATGTGACAAG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111486225 591 - 210400635 tggagattcaccatgtgcagg-cactgtgctgggagcctcaacatcctttccacaacctgtaaggtaaatgaaagttcccatgttttggggaaggaagctgaagctcagaaaagttaagtgcctttccagggcca-tac----------agtagtaactggtagagcagaaactgaatctcactctagtct-ggttctaatggctatatactctgcccacactccctcactAGGGTTTTCAAACCTACATGCTACGAAGAGACCACACATGATCTGGAATGGCTGTGACAACTTATATATGAGAAGCACAGTTTTTCATA---------------AACCAAAGACCCTTCACAACAAAGCAGAGTGTCTTCTCTTAGAAA--ACACAAT-A-----TTGGCATTTTGGGGCTCTCCTAGAAATGGATCCAGCAGAAAACATCTAAACGGTTTCTAATCTATTTCTAGTG-CTGTAAGGCAATGTTGTAAGCATAACCCCAAGGCTATAGCTCACACACCTATTGTGTATCTTAAACCTCACAAAAGATTGGTTTTTCTTTGTCCTAGCCTCTAATGGTGTGAGCTTGATGTGGCTG--ATGTATTGATACTCAGATTGCAATGTGACAAG i calJac3.chr1 C 0 C 0 s mm10.chr19 38104936 443 - 61431566 tgaacatttactctggtcaggtttctgtgcctagaatcattatatccttcctacaatctgtaatgtaagttaaaggccccaattttcagacagggaaatcgaagcttggcggagttaagtgtcctt-tggagcta-ctt-----------gtagtaactggtaaagtggggactgtatttcaggtttgttt-cattccagtgaccatattctttgc--acactgcctcaTTGGCATCACCG---TCACATG-------------ACTCATGA---------------------TGCATGTGACCAACAGAAATCATC------------------------------------------------------------------TATAAT---------------------------------------CAACAGAAA----------------TGAACTATTTCTAGTGTCTATATTCTGATACTATAAGCGTAGCTCCAGGAGTGCACCCCATTCTCCTA-------------ACCACATGGAAAAGTAGCTTTCTTGTCTTCCAGTCTTTAATAGCGTGCGCTAAATAAGGCTGACATATATCAGCTGTGAGATGGAAGAGGGACAAG i mm10.chr19 I 30 N 0 s canFam3.chr1 35353921 585 - 122678785 TGGGTATTCA--GTTTGTAAA-C------------------ACatccttaccacaatctgtaaagtaagtggaagtgcctgtttttcacatgagaaaaccaaaattgggagaatttaagtgtttttccatggcca-cgg----------agtagtaacaggtagagtaaggacagaatctcaggaatgtca-gactctactggctatat--cctggccacactgtctcACCAGAGTTTCCCTGCCTTCGTGATACTAGGACACTGCAAACGACCTGGAACAACTGTGACAGCTTCTATGTGAAAGGCCCAGTTCTTCACATAGCAGCATGATCTCACCCCAACACCTTTCA-GCCAAAGAAGGGTATCTTCTCTTGGAAAGGATATATTCAAACTGATGGTATTTTTAGACATCTATAGAAATGCATCTAGCAGAAAGTA---AATTCTTTTCTGAGCTATTTCTGATGGCAGCAAACCAG---TGTAAATTTAACTCCAGGGCTGCAGCCTGCACATCTAGTGTGTGTCCTAAGGCC--TGAAAGGGTGGCTTCTTCTTTCTCTGGAGTCCAGTGGCTTGAGACATAAGTAGGTGG-ATATATTGGCTCTCAGATTACAATATGACAGG i canFam3.chr1 I 403 C 0 e rheMac3.chr15 79841036 2809 + 112192347 I e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=17400.000000 s hg38.chr9_GL383541v1_alt 160115 14 + 171286 GGTTACtgtctcaa s panTro4.chr9 68719540 14 + 137840987 GGTTACtgtctcaa i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64870393 14 + 135191526 GGTTATtgtctcaa i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57914754 14 - 122973662 GGTTATtgtctcaa i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 81237785 14 + 108555830 GGTTATtgtctcaa i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111486816 14 - 210400635 GGTTATtgtctccg i calJac3.chr1 C 0 C 0 s canFam3.chr1 35354506 14 - 122678785 TACCACTCGTTCAA i canFam3.chr1 C 0 I 236 e rheMac3.chr15 79841036 2809 + 112192347 I e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=467616.000000 s hg38.chr9_GL383541v1_alt 160129 381 + 171286 tccattttgtgctgctataacagaatggctga-actgagcaatttatatagaatggaaacttatatccttacagttctaggggctgcaaagtctaagatcaaggttctgatatctagtgagagccatcttgctacatcatcccatggtggaaggggc--agagagagggtaagggaaagagcaagagggaaccaaactcatcctttaacaaggaacctactcccatgataatggcattaatccattaacaagggcagtgcccccatgacccaaacatctcccattaagccctacctttcgacaccactgcattggggaatcaagtttccaactcatgagttttgggggatacatccaaaccatggcaGTTACCCATTCAAAAAT s panTro4.chr9 68719554 382 + 137840987 tccattttgtgctgctataacagaatgcctgagactgagcaatttatatagaatggaaacttatatccttacagttctgggggctgcaaagtctaagatcaaggttctgatatctagtgagagccatcttgctacatcatcccatggtggaaggggc--agagagagggtaagggaaagagcaagagggaaccaaactcatcccttaataaggaacctactcccatgataatgacattaatctattaacaagggcagtgcccccatgacccaaacatctcccattaagccctacctttcgacaccgctgcattggggagtcaagtttccaactcatgagttttgggggatacatccaaaccatggcaGTTACCCATTCAAAAAT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64870407 381 + 135191526 tccattttgtgctgctataatagaatgcctgagactgagcaatttatatagaacggaaacttatatccttacagttctgggggctgcaaagtctaagatcaaggttctgacatctagtgagagccttcttgctacatcatcccatggtggaaggggc--agagagagggtgagggaaagagcaagagggaactaaactcattctttaataaggaacctactcccatgataatggcattaatccattaataagggcagtgaccccatgacccaaacatttcccattaagccctacctttctacaccgctgcactggggaatcaag-ttccaactcatgagttttgggggatacatccaaaccatggcaGTTACCCATTCAAAAAT i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57914768 382 - 122973662 tccattttgtactgctataacagaatgcctgagactgagcaatttatatagaacagaaacttatatccttacagttctgggggctggaaagtctcagatcaaggttctgacatctagtgagagccttcttgctacatcatcccatggtggaaggggc--agagagagggttagggaaacagcaagagggaaccaaactcatcctttaataaggaacttactcccatgataatggcattaatccattaataagggcagtgcccccatgacccaaacatctcccattaagccctacctttcaacaccactgcattggggaatcaagtttccaactcatgagttttgggggatacatccaaaccatggcaGTTACCCATTCAAAAAT i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 81237799 380 + 108555830 tccattttgtgctgc--taacagaatgcctgagattgagtaatttatatggaatgtaaacttacatccttacagttctgggggctggaaagtctaagatcaaggttctgacatctagtgagagccttcttgctacatcatcccatggtggaaggggc--agagagagggtgagggaaagagcaagagggaaccaaactcatactttaataaggaacctactcccatgataatggcattaatccattaataagggcagtgcccccatgacccaaacatctcccattaggtccttcctttcaacactgctgcactggggaatcaagtttccaactcacgagttttgggggacacatccaaaccatggcaGTTACCCATTCAAACAT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111486830 379 - 210400635 tccattttatgctgctataacagaatgtctgagact----aatttatatagaacagaaacttacatcctcacagttctgggagctggaaagtctaagatcaaggtgttgacatctagtgaaagccttcttgctacgtcatcccatggtggaaggggcaaagagagagagtgaggggaagagtaagagggaatcaaactcatcttttaataagaaaccccctcccatgaaattggcattaagccgttaataagggtagtgctcccatgatccaaacatctcccattaggccctacctcttgacaccacttcattggggaatcaagtttccaactcatgagttttggggttcacatccaaactatagcaGTTACCCATTCAAA-AT i calJac3.chr1 C 0 C 0 e canFam3.chr1 35354520 236 - 122678785 I e rheMac3.chr15 79841036 2809 + 112192347 I e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=379690.000000 s hg38.chr9_GL383541v1_alt 160510 276 + 171286 TAATGCATAAACAAACAAAGGTTTCTCTAAAACATTCACTTATTTGTTAAAACAACCAGCATCATAAGCTACATGTATATAAGAATTAAACCTCTCATAACTGAAAGCAATCAGAAATGGTATATAGTCCAGGATCCCTAGGATCTTGTTCTATTCCATATTTCCTGAATACCCACTATGCATTATACATCAAATAATTGCCCCAGAGTTATAATAAGTCAAGTAATAAGGGTTAAGTCCTAGAGGTAATGAAACCACA----------CAGCTAGCTCTCCTTGT s panTro4.chr9 68719936 276 + 137840987 TAATGCATAAACAAACAAAGGTTCCTCTAAAACATTCACTTATTTGTTAAAACAACCAGCATCATAAGCTACATGTATATAAGAATTAAGCCTCTCATAACTGAAAGCAATCAGAAATGCTATATAGTCCAGGATCCCTAGGATCTTGTTCTATTCCATATTTCCTGAATACCCACTATGCATTATACATCAAATAATTGCCCCAGAGTTATAATAAGTCAAGTAATAAGGGTTAAGTCCTAGAGATAATGAAACCACA----------CAGCTAGCTCTCCTTGT i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64870788 276 + 135191526 TAATGCATAAACAAACAAAGGTTCCTCTAAAACATTCACTTATTTGTTAAAACAACCAGCATCAGAAGCTACATGTATATAAGAATTAAACCTCTCATAACTGAAAGCAATCAGAAATGGTATATAGTCCAGGATCCCTAGGATCTTGTTCTATTCCATATTTCCTGAATACCCACTATGCATTATACATCAAATAACTGTCCCAGAGTTATAATAAGTAAAGTAATAAGGGTTAAGTCTTAGAGATAATGAAACCACA----------CGGCTAGCTCTCCTTAT i ponAbe2.chr9 C 0 I 9 s nomLeu3.chr1a 57915150 276 - 122973662 TGATGCATAAACAAACAAAGGTTCCTCTAAAACATTCACTTATTTGTTAAAACAACCAGCATCAGAAGCTACATGTACATAAGAATTAAACCTCTCATAACTGAAAGCAATCAGAAATGGTATATAGTCCAGGATCCCTAGGATCTTGTTCTATTCCATATTTCCTGAATACCTAAGATGAATTATACATCAAATAATTGCCCCAGAGTTATAATAAGTAAAGTAATAAGGGTTAAATCCTAGAAATAATGAAACTACA----------CAGCTGGCTCTCCTTGT i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 81238179 266 + 108555830 TAATGCATAAACAAATGAAGGTTCCTCTAAAACATGCACTTATTTGTTAAAATCACCAGCATCAGAAGCTACATGTATATAAGAATTAAACCTCTTGTAACTGAGAGCAATCAGAAATGATATATAGTCCAGGATCCCTAGGATCTTGTTCT-----ATATTTCCTGAATACCCACTATGCATTATACATCAAATAATTGCCCTAGAGTTATAAT-----AAGTAATAAGGGTTAAGTCCTAGAGATAATGAAACCACA----------CAGCAAGCTCTCCTTGT i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111487209 275 - 210400635 TAATGTATAAACAAACAAAGGTTCCTCTAAAATATTCACTTATTTGTTAAAACCACCAGCTTCAGAAGCTACATGTGTATGAGAATTAAACCTCTTATAACTGAGAGCAATCATAAATGGTATATAGTCCAGGTTCCCTAGGATCTTGTTCTATTCCATATTTCCTGAATACTCACTCTGCATTATACATGAAATAACTG-CCCAGAGTTATAATAAGTAAAGTAATAAAGGCAAAGTCCTACAGATAATGAAACCACA----------CATCGAGATCTCCTTGt i calJac3.chr1 C 0 C 0 s canFam3.chr1 35354756 220 - 122678785 tcatgaataaataagtaaaa---tctttaaaaaa----------------------------------------------GAAAAAGAAACATCTTAGAACTGGGAGCAGTCACAAA----------TCCAG-------ATGATCTTGATTTATTCCCCATTTTCTGAGCATCTACTATGCCTTATGCACCAAATAATTGTCCCAAAATTATAATAAGTATAGTATTAAGGGTTAAGTTCTAGAGAAGTTGGAACCACACAGAGAGAAGCAGCTAGCTCTCCTTGG i canFam3.chr1 I 236 C 0 e rheMac3.chr15 79841036 2809 + 112192347 I e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=7773.000000 s hg38.chr9_GL383541v1_alt 160786 7 + 171286 GGGTATC s panTro4.chr9 68720212 7 + 137840987 GGGTATC i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57915426 7 - 122973662 GGGTATc i nomLeu3.chr1a C 0 I 8 s chlSab2.chr12 81238445 7 + 108555830 GGATATc i chlSab2.chr12 C 0 I 8 s calJac3.chr1 111487484 7 - 210400635 gagtatc i calJac3.chr1 C 0 I 8 s canFam3.chr1 35354976 7 - 122678785 GAGCATc i canFam3.chr1 C 0 I 8 e ponAbe2.chr9 64871064 9 + 135191526 I e rheMac3.chr15 79841036 2809 + 112192347 I e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=74995.000000 s hg38.chr9_GL383541v1_alt 160793 51 + 171286 tgagtgtgagttcatcaagaatggtagggaggaaggaagcattccaggatg s panTro4.chr9 68720219 51 + 137840987 tgagtgtgagttcatcaagaatggtagggaggaaggaagcattccaggatg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64871073 51 + 135191526 tgagtgtaagttcatcaagaatggtagggaagaaggaagcattccaggatg i ponAbe2.chr9 I 9 C 0 s nomLeu3.chr1a 57915441 51 - 122973662 tgagtgtgagttcatcaagaatggtagggaggaaggaagcattccaggacg i nomLeu3.chr1a I 8 C 0 s chlSab2.chr12 81238460 51 + 108555830 tgactgtgagttcatcgagaatggtagggaggaaggaagcattccaggatg i chlSab2.chr12 I 8 C 0 s calJac3.chr1 111487499 51 - 210400635 tgagtgtgagttcattaagagtggcagggaggaaggaagtgttccaggatg i calJac3.chr1 I 8 C 0 s canFam3.chr1 35354991 49 - 122678785 tgagtgagagttcaccaagaagaatggcaag--atgtgggatccctgggtg i canFam3.chr1 I 8 N 0 e rheMac3.chr15 79841036 2809 + 112192347 I e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=421951.000000 s hg38.chr9_GL383541v1_alt 160844 348 + 171286 agggaatggctggtgtgaagtatggagccattaaacagtgtggcagctttcgaagaactgtaagtgactaggctggcatgtagaatattgTCACCCAGGATTACCAACAAAGTGGAGTCTAAAATATAGgc-ttttttgtgcaatattggcagttttgttttaatatttccaaagattatcaacttacaaccttgagactaagaacacttatcataggaaacattggttaagacgttattgtaaaaaacgtatttacttaaaattAAATGTACCCACCAACTTTATCAAAATTACCTGTAACTAAGACATTGGAGATCTATCTCTAGCTAACATAACAATACTAAAATG s panTro4.chr9 68720270 348 + 137840987 agggaatggctggtgtgaagtatggagccattaaacagtgtggcagctttcgaagaactgtaagtgactaggctggcatgtagaatattgTCACCCAGGATTACCAACAAAGTGGAGTCTAAAATATAGgc-ttttttgtgcaatattggcagttttgttttaatatttccaaagattatcaacttacaaccttgagactaagaacacttatcataggaaacattggttaagacgttattgtaaaaaacgtatttacttaaaattaaatgtacccaccaacttcatcaaaattacctataactaagacattggagatctatctctagctaacataacaatactaaaatg i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64871124 349 + 135191526 agggaatggctggtgtgaagtatggagccattaaacagtatggcggctttcgaagaactgtaagtgactaggctggcatgtagaatattgTCACCCAGGATTACCAACAAAGTGGAGTCTAAAATACAGGCTTTTTTTGTGCAATATTGGCAGTTTTGTTTTAATATTTTCAAAGATTATCAACTTACAACCTTGAGACTAAGAACACTTATCATAGGAAACACTGGTTAAGACATTATTGTAAAAAATGTATTTACTTAAAATTAAATGTACCCACCAACTTTATCAAAATTACCTATAACTAAGACATTGGAGATCTATCTCTAGCTAACATAACAATACTAAAATG i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57915492 349 - 122973662 agggaatggctggtgtgaagtatgaagccattaaacggtgtggcagctttcaaagaactgtaagtgactaggctggcatgtagaatattgTCACCCAGGATTACCAACAAAGTAGAGTCTAAAATATAGGCTTTttttgtgcaatattgacagttttgttttattatttccaaagattatcaacttacaaccttgagactaagaacacttatcaaaggaaacattggttaagatgttattgtaaaaaatgtatttacttaagattaaatgtacccaccaactttatcaaaattacctataactaagacattggagatctatctctagcaaacataacaatactaaaatg i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 81238511 335 + 108555830 agggaatggctagtgtgaagtatggagccattaaa--------cagctTTCGAAGAACTGTAAGTGACTAGGCTGGCACGTAGAATATTGTCACCCAGGATTACCAACAAAGTGGAGTCTAAAATACAGGCTTTTTTGGtgcaacattgaaagttttgttttaatatttccaaatattatcaacttacaaccttcagactaagaacacttatcataggaaacattggttaagatgttattgtaaaaaatgtatttACCTAACATTAAAGGTACCCACCAACTTTATCAAAATTAC------CTAAGACATTGAAGATCTATCTCTAGCTAACATATCAATACTAAAATG i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111487550 344 - 210400635 agggaatggctggtgcgaagtatggagccattaaacagtgtggcagcttttgaagaactataagtgactagggtggcgtgtagaatattgtcagccaggaCTATCAACAAATTGAAGTCTAAAATATAGGCTTTTTT--TGCAATATTGAAAGTTTTGTTTTAATATTTCCAAAGATTATCAACTTACAACCTTGAGACTAACAACACTTATAGCAGGAAACATTGCTTAAGACATAATTGTAAAAAATG---TTACTAAAAATTAAGTGTACCCACCAACTTTATTGAAATTGCCTAAATCTAAGACATTGGAGATCTATCTCTAGGTAACACAACAATACTAAAATG i calJac3.chr1 C 0 C 0 e rheMac3.chr15 79841036 2809 + 112192347 I e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=244397.000000 s hg38.chr9_GL383541v1_alt 161192 341 + 171286 AGGTGGggccgggcatggtggctcacgcttgtaatcccagcactttgggaggctgaggcaggcggatcacgaggtcaggagatcgagactatcctggctaacacggtgaaacctcgtctctactaaaaacacaca---------------cacacacacacaaaattagctgggtgtggtggcgggtgcctgtagtcccagctacttggaagactgaggcaggagaatggcgtgaacccggaaggcggagcttgcagtgagccgagatcatgccactgcactccagcctgggcaacagagcaagactccgtctcaaaaaaaat----------aaataaataaataaataa--aaaTAAAataaaata s panTro4.chr9 68720618 338 + 137840987 aggtggggccgggcatggtggctcacacttgtaatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagatcgagactatcctggctaacacggcgaaacctcgtctctactaaaa--acaca---------------cacacacacacaaaattagctgggtgtggtggcgggtgcctgtagtcccagctacttggaagactgaggcaggagaatggtgtgaacccgggaggcggagcttgcagtgagccgagatcatgccactgcactccagcctgggcaacagagcaagactccatctc-aaaaaaat----------aaataaataaataaataa--aaataaaatgaaata i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64871473 316 + 135191526 AGGTGGggccgggcgcggtggctcacgcttgtaatcccagcactttgggaggccgaggcgggcggatcatgaggtcaggagatcaagactatcctggctaacacggtgaaacctcgtctctactaaaa--ataca----------------aaaaaaaaaaaaaattagctgggcgtggtggcgggtgcctatagtcccagctacttgggagactgaggcaggagaatggcatgaacccgagaggcggagcttgcagtgagctgagatcatgccactgcactccagcctgggcaacagagcaagactccgtctc-aaa-------------------------------aa--aaataaaataaaaTA i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57915841 351 - 122973662 aggtggggccgggtgcggtggctcacgcttgtaatcccagcactttgggaggccgaggcgggcggatcacaaggtcaggagatggagactatcctggctaacacggtgaaacctcgtctctactaaaa--ataca-------------acaacaacaacaaaaaattagctgggcatggtggcgggtgcctgtagtcccagctacttgggaggctgaggcaggagaatggtgtgaacccgggaggcggagcttgcagtgagctgagatcacaccactgcactccagcctgggtgacagag-aagactccgtctc-aaaaaaataaaaaataaaaaataaataaataaataaataaataaaataaaata i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 81238846 330 + 108555830 AGTTGGggcccggcgtggtggctcatgcttgtaatcccagcactttgggaggccgaggggggcggatcacgatgtcaggatatcgagaccattctggctaatgcggtgaaaccccgtctctactaaaa--atacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattagccaggcgtggtggcgggcacctgtagtcccagctacgcgggaggctgaggcaggagaatggcgtgaacctgggaggcagagcttgcagtgagctgagatcataccactgcactccagcctgggcaacagagcgaaactcagtctc-aaaaaaat-----------------------------------aaataaaaTG i chlSab2.chr12 C 0 C 0 e rheMac3.chr15 79841036 2809 + 112192347 I e calJac3.chr1 111487894 0 - 210400635 C e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=3247201.000000 s hg38.chr9_GL383541v1_alt 161533 2744 + 171286 aggcatagattcccttaaaattaggaa-cataactaaggcattcctttctacaaaTGaaa-aaaaaaaaaaacaaaaGCTTTAAAATCTAGTGCATAAACTCAATATTACATTTCAAACTCTTAGCCAGAAGATATATGCTCCTATAAAATTCCAGCCAGGATGGGTATAGTGTGTAGAAAGATGAAGAAAAATAAATGAATTATAGACCTCTTTTTCTAGC--------------AAAAAAAAAATACACTAGAGATCACTGTGCACTC--GCTACAAAACACCTGAAAATGCAAGAAAAAAAGGATAAATGGATAAAATATTCCt----tttttttttttacattaatttctgggatacaagtgcagaacatgcaggtttgttacacaggtatacatgtgtgatggtgctttgccagacctatcatcccaacatctaggttttaagccctgcatgcattagatatttgt----------------------ccccccaccccccaacaggccccggtgtgtgatgctcccctccctgtgtccacgtgttatcattgttcaactcccacttatgagtgagaacatgcagtgtttggttttctgttcctgtgttagtctgctgagaatgatgctttccagcttcatccatgtccctccaaaggacatgaactcattcttttttatggctgcatagtatttcatggggtatatgtgccacattttctttatccagtctatcactgatgggcattttggttggttccaagtctttgctattgtaaatagtgctgcagtaaacatatgtgtgcatgtgtctttacagtagaatgatttataatcctttgggtatatacccagtaacgggattgttgggtcaaatggtatttctggttctagatccttgaagaattgccacactgtctcccacaatggttgaactaatttacactcccaccaacagtgtaaaagcattcctatttttccacatcctctctctacatctgttgttttctgactttttaatgattgccattctaactggcatgagatggtatctcattgtgtttttgatttgcatttctctaatgaccagtgatgatgagctttttttc--atgtttgttggctgcataaacatcttcttttgagaagtgtctgttcatatccttcggccactttttgatgggggttg-gttttttcttgtaaatttgtttaagttcactgtacattccagatattagacctttgtcagattgatagattgcaaaacttttctcctattctgta-------ggaatactctgatggcagtttcttttgctgtgcagaagctctttagtttaatcagatcacatttgtcaattttggcttttgctgcaattgcttttgatattttagtcatgaagtctttgcccatgtctatgtcctgaatggtattgcctaggttttcttc-atggtttttatggttttaggttttatacttaagtctttaatccaacttgagttaa-ttttgtataaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccagttttcccagcaacatttattacatagagaatcctttccccattgcttgtttttatcaggtttgtcaaagatcatatggttgcagatgtgtggtgttatttctgaggcctctgttctgttccattggtctatatgtctgttttggcaccagtaccatgctgttttggttactgtagccttgtagtatagtctgaagtcaggtaacgtgatgcctccagctttgttc-tttttgcttaggatagtcttggctatacaggctcttttt-tggttccatatgaaatttaaagtag-ttttttctaattctgtgaagaacgtcaatggtagcttgatgggaatagcattgaatctataaattactttgggcagtatggccattttcatgatattgattcttcctattgataagcatggaattttttttccatttgtttgtgtcctctcttatttttcttgagcactggtttgtagttctttttgaagaggtccttcacatcccttgtaagttgtattccttggtattttattttctttgtagctattgtgaatgggaagttcactcattatttggctctctgcttgtctattattggtgtatagggatgcttgtgatttttgcacattgattttgtatccagagactttgctgaagttgattatcagcttaaggagtttttgggctgagacaatggggttttctaaatatacaatcatgtcatctgcaaaaagagacaatttgacttcctctcttcctatttgagtaccttttatttctttctcttgcctgattgccctggacagaacttccaatactatgttgaataggaatggtgagagagggtatccttgtctt-tgccagttttcaaagggaatgcttccagcttttccccattcggtatgatattggctatgggtttgtcataaatagctcttattattttgaggtatctca----------------------------------------------------------------catgaacacctagtttattgagagtttttagcatgaagcggtgttgaattttatcgaaggccttttctgcatctattgagataatcatgtggtttttgtcattggttctgtttatgtgatggattacatttattgatttgtgtatgtcgaaccagccttgtatcccagggatgaagccgacttgattgtggtggataagctttttgatgtgctgctggattcggttggtcagtattttattgaggatttttgcattgatgttcatcagggacattggcctga s panTro4.chr9 68720956 2735 + 137840987 aggcatagattcccttaaaattaggaa-cataactaaggcattcctttctacaaaTGAAA-AAAAAAAA----AAAAGCTTTAAAATCTAATGCATAAACTCAATATTACATTTCAAACTCTTAGCCAGAAGATATATGCTCCTATAAAATTCCAGCCAGGATGGGTATAGTGTGTAGAAAGATGAAGAAAAATAAATGAATTATAGACCTCTTTTTCTAGC--------------AAAAAAAAAATACACTAGAGATCACTGTGCACTCTGGCTACAAAACACCTGAAAATGCAAGAAAAAAAGGATAAATGGATAAAATATTCC-----tttttttttttacattaatttctgggatacaagtgcagaacatgcaggtttgttacataggtatacatgtgtgatggtgctttgccggacctatcatcccaacatctaggttttaagccctgcatgcattagatatttgtc---------------------ccccccaccccccaacaggccccggtgtgtgatgctcccctccctgtgtccatgtgttatcattgttcaactcccacttatgagtgagaacatgcagtgtttggttttctgttcctgtgttagtctgctgagaatgatgctttccagcttcatccatgtccctccaaaggacatgaactcattcttttttatggctgcatagtatttcatggggtatatgtgccacattttctttatccagtctatcactgatgggcattttggttggttccaagtctttgctattgtaaatagtgctgcagtaaacatatgtgtgcatgtgtctttacagtagaatgatttataatcctttgggtatatacccagtaacgggattgttgggtcaaatggtatttctggttctagatccttgaagaattgccacactgtctcccacaatggttgaactaatttacactcccaccaacagtgtaaaagcattcctatttttccacatcctctctctacatctgttgttttctgactttttaatgattgccattctaactggcatgagatagtatctcattgtgtttttgatttgcatttctctaatgaccagtgatgatgagctttttttc--atgtttgttggctgcataaacatcttcttttgagaagtgtctgttcatatccttcggccactttttgat-ggggttg-gttttttcttgtaaatttgtttaagttcactgtacattccagatattagacctttgtcagattgatagattgcaaaacttttctcctattctgta-------ggaatactctgatggcagtttcttttgctgtgcagaagctctttagtttaatcagatcacatttgtcaattttggcttttgctgcaattgcttttgatattttagtcatgaagtctttgcccatgtctatgtcctgaatggtattgcctaggttttcttc-atggtttttatggttttaggttttatatttaagtctttaatccaacttgagttaa-ttttgtataaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccagttttcccagcaacatttattacatagagaatcctttccccattgcttgtttttatcaggtttgtcaaagatcatatggttgcagatgtgtggtgttatttctgaggtctctgttctgttccattggtctatatgtctgttttggcaccagtaccatgctgttttggttactgtagccttgtagtatagtctgaagtcaggtaacgtgatgcctccagctttgttc-tttttgcttaggatagtcttggctatacaggctcttttt-tggttccatatgaaatttaaagtag-ttttttctaattctgtgaagaaagtcaatggtagcttgatgggaatagcattgaatctataaattactttgggcagtatggccattttcatgatattgattcttcctattgataagcatggaattttttttccatttgtttgtgtcctctcttatttttcttgagcactggtttgtagttctttttgaagaggtccttcacatcccttgtaagttgtattccttggtattttattttctttgtagcaattgtgaatgggaagttcactcattatttggctctctgcttgtctattattggtgtatagggatgcttgtgatttttgcacattgattttgtatccagagactttgctgaagttgattatcagcttaaggagtttttgggctgagacaatggggttttctaaatatacaatcatgtcatctgcaaacagagacaatttgacttcctctcttcctatttgagtaccttttatttctttctcttgcctgattgccctggacagaacttccaatactatgttgaataggaatggtgagagagggtatccttgtctt-tgccagttttcaaagggaatgcttccagcttttccccattcggtatgatattggctatgggtttgtcataaatagctcttattattttgagg------a----------------------------------------------------------------catgaacacctagtttattgagagtttttagcatgaagcggtgttgaattttatcgaaggccttttctgcatctattgagataatcatgtggtttttgtcattggttctgtttatgtgatggattacatttactgatttgtctatgtcgaaccagccttgtatcccagggatgaagccgacttgattgtggtggataagctttttgatatgctgctggattcggtttgtcagtattttattgaggatttttgcattgatgttcatcagggacattggcctga i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64871789 2771 + 135191526 AGGCATAGATTCCCTTAAAATTAGGAA-CATAACTAAGGCATTCCTTTCTACAAATGaaacaaaaacaaaaacaaaaacTTTAAAATCTAGTGCATAAACTCAATATTACATTTCAAACTCCTAGCCAGAAGATATATGCTCCTATAAAATTCCAGCCAGAATGGGTATAGTGTGTAGAAAGATGAAGAAAAATAAATGAATTATAGACCTCTTTTTCTAGC-------------AAAAAAAAAAATACACTAGAGATCACTGTGCACTCTGGCTACAAAACACCTGAAAATGCAAGAAAAAAAGGATAAATGGATAAAATATATAT-ATATAtttttttttacattaagttctgggatacaagtgcagaacatgcaggtttgttacataggtatacatgtgcgatggtgctttgctggacctatcatcccaacatctaggttttaggccctgcatgctttaggtattcgtcctaatgctctcccttctctttccccccaccccccaacaggcccctgtgtgtgatgctcccctctctgtgtccacgtgttctcattgttcaactcccacttatgagtgagaacatgcagtgtttggttttctgttcctgtgttagtctgctgagaatgatgctttccagcttcatccatgtccctccaaaggacatgaactcattcttttttatggctgcatagtatttcatggggagtatgtgccacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtaaatagtgctgcagtaaacatacatgtgcatgtgtctttacagtagaatgatttataatcctttgcgtatatacccagtaatgggattgttgggtcaaatggtatttctggttctagatccttgaagaattgccacactgtctcccacaatggttgaactaatttacactcccaccaacagcgtaaaagcattcctatttttccacatcctctctccacatctgttgttttctgactttttaatgatcgccattctaactggcatgagatggtatatcattgtggttttgatttgcatttcattaatgaccagtgatgatgagctttttttc--atgtttgttggctgcataaatgtcttcttttgagaagtgtctgttcgtatcctttggccactttttgat-ggggttg-gttttttcttctaaatttgtttaagttcactgtacattctagatattagacctttgtcagattgatagattgcaaaaattttctcctattctgta-------ggaatactctgatggcagtttcttttgctgtgcagaagctctttagtttaattagatcacatttgtcaattttggcttttgctgcaattgcttttgatattttagtcatgaagtctttgcccatgcctatgtcctgaatggtattgcctaggttttcttc-atggtttttatggttttaggttttatatttaagtctttaatccaacttgagttaa-ttttgtataaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccagttttcccagcaacatttattacatagagaatcctttccccattgcttgtttttatcaggtttgtcaaagatcagatggttgcagatgtgtggtgttatttctgaggcctctgttctgttccattggtctatatatctgttttggcaccagtaccatgctgttttggttactgtagacttgtagtatagtctgaagtcaggtaacgtgatgcctccagctttgttc-tttttgcttaggatagtcttggctatacaggctcttttt-tgtttccatataaaatttaaagtag-ttttttctaattctgtgaagaaagtcaatggtagcttgatgggaatagcattgaatctataaattactttgagcagtatggccattttcatgatattgattcttcctattgataagcatggaattttttttccatttgtttgtgtcctatctta-ttttcttgagcactggtttgtagttctttttgaagaggtccttcacatcccttgtaagttgtattcctcggtattttattttctttgtagcaattgtgaatgggaagttcactcatgatttggctccctgcttgtctattattggtgtatagggatgcttgtgatttttgcacattgattttgtatccagagactttgctgaagttgattatcagcttaaggagattttgggctgagacgatggggttttctaaatatacagtcatgtcatctgcaaacaggcacaattggacttcctcttttcctgtttgagtaccttttatttcttcctcttgcctgattgccctggacagaacttccaatactatgttgaataggaatggtgagagagggtatcctcgtctt-tgccagttttcaaagggaatgcttccagcttttccccattcggtatgatattggctatgggtttgtcataaatagctcttattattttgaggtatctca----------------------------------------------------------------cataaacacctagtttattgagagtttttagcatgaagcggtgttgaattttatcgaaggccttttctgcatctattgagataatcatgtggtttttgtcattggttttgtttatgtgatggactacatttattgatttgtgtatgttgaaccagccttgtatcccagggatgaagccgacttgattgtggtggataagctttttgatgtgctgctggattcggtttgtcagtattttattgaggatttttgcattgatgttcatcagggacattggcctga i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57916192 2754 - 122973662 aggcatagattcccttaaaattaggaa-cataactaaggcattcctttctacaaaCGAAAAAAAAACAAAAACAAAAACTTTAAAATCTAGTGCATAAATTCAATATTACATTTCAAACTCCTAGCCAGAAGATATATGCTCCTACAAAATTCCAGCCAGAATGGGTACAGTGTGTAGAAAGATGAAGAAAAATAAATGAATTATAGACCTATTTTTCTACC------------AAAAGAAAAAAAAACACTAGAGATCACTGTGCACTCTGGCTACAAAACACCTAAAAATGCAAGAAAAAAAGGATAAATGGATAAAATATTCtttttttttttttttttacattaagttctgggatacaagtgcaaaacatgcaggtttgttacataggtatacatgtgcgatggtgctttgctggacctatcaccccaacatctaggttttaagccctgcatgcatcaggtatttgtcctaaggttctcccttccctttccccccaccccccaacaggtcccagtgtgtgatgctcccctccctgtgtccatgtgttatcattgttcaactcccacttatgagtgagaacatgcagtgtttggttttctgttcctgtgttagtctgctgagaatgatgctttccagcttcatccatgtccctccaaaggacatgaactcattcttttttatggctgcatagtattccatggggtatatgtgccacattttctttatccagtctatcatcgatgggcatttgggttggttccaagtctttgctattgtaaatagtgctgcagtaaacatacatgtgcatgtgtctttacagtagaatgatttataatcctttgggtatatacccagtaatgggattgttgggtcaaatggtatttctggttctagatccttgaagaattgccacactgtgtcccacaacggttgaactcatttac----------acagtgtaaaagcattcctgtttttctacatcctctctccacatctgttgttttctgactttttaatgatcgccattctaactggcatgagatggtatctcattgtggttttgatttgcatttctctcatgaccagtgatgacgagccttttttc--atgtttgtcggctgcataaacgtctacttttgagaagtgtctgttcatatccttcggccacattttgat-ggggttg-gttttttcttgtaaatttgtttaagttcactgtacattctaaatattagacctttgtcagattgatagattgcaaaaattttctcctattctgta-------ggaatactctgatggcagtttcttttgctgtgcagaagctc-----tttaattagatcacatttgtcaattttggcttttgctgcaattgcttttgatattttagtcatgaagtctttgcccatgcctacgtcctgaatggcattgcctaggttttcttc-atggtttttatggttttaggttttatatttaagtctttaatccaacttgagttaa-ttttgtataaggtgtaaggaaggggtccagtttcagttttctgcatatggctacccagttttcccagcaacatttattacatagagaatcctttccccattgcttgtttttatcaggtttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggcccctgttctgttccattggtctatatatc-gttttggcaccagtaccatgctgttttggttactgtagccttgtagtatagtctgaagtcaggtaatgtgatgcctccagctttgttc-tttttgcttaggatagtcttggttatacaggctcttttt-tggttccatatgaaatttaaagtag-ttttttctaattctgtgaagaaagtcaatggtagcttgatgggaatagcattgaatctataaattaccttgggcagtatggccattttcatgatattgattcttcctattgataagcatggaa-tttttttccatttgtttgtgtcctctctta-ttttcttgagcagtggtttgtagttcttttcgaagaggtccttcacatcccttgtaagttgtattcctcggtattttattttctttgtagcaattgtgaatgggaagttcactcatgatttggctctctgcttgtctattattggtgtatagggatgcttgtgatttttgcacattgattttgtatccagagactttgctgaagttgattatcagcttaaggagtttttgggctgagacaatggggttttctaaatatacaatcatgtcatctgcaaacagagacaatttgacttcctctcttccagtttgagtaccttttatttctttctcttgcctgattgccctggacagaacttccaatactatgttgaatagtaatggtgagagagggtatccttgtctt-tgccagttttcaaagggaatgcttccagcttttccccattcagtatgatattggctatgggtttgtcataaatagctctcattattttgaggtatctca----------------------------------------------------------------catgaacacctagtttatt--gagtttttagcatgaagtggtgttgaattttatcaaaggccttttctgcatttattgagataataatgtggtttttgtctttggttctgtttatgtgatggactacatttattgatttgtgtatgtcgaaccagccttgtatcccagggatgaagccgacttgattgtggtggataagctttttgatgtgctgctggattcggtttgtcagtattttattgaggatttttgcattgatgttcatcagggacattggcctga i nomLeu3.chr1a C 0 C 0 s chlSab2.chr12 81239176 2748 + 108555830 AGGCATAAATTCCCTCAAAATTAGGAACCACAACTAAGGCATTTGTTTCTACAAATGAAAGAAAAAACAAAAC-------TTAAAATCTAGCGCAAAAACTAAACATTACATTTCAAACTCCTAGCCAGAAGATAGATGCTCCTATAAAATTCCACCCAGAATGGGTACAATGTGTAGAAAGATGAAGAAAAAT-----AATTATAGACCTCTTTTTCTAGCCaaaaaaaaaaaaaaaaaaaaaaaTACACTAGAGATCACTGTGCACTCTGGCTATAAAACACCGGAAAATGCAAG-AAAAAAGGATAAATGGATAAAATAttctt----------tttttacattaaattctgggatgcaagtgcagaacatgcaggtttgttacatgggtatacatgtgccatggtgctttgctgcacctatcatcccatcatctaggttttaagccctgcaggcattagatatttgttctaatgctctcccttccctttccccctaccccccaacaggtcctggtgtgtgatgctcccctccctgtgtccatgtgttctcattgttcaactcctacttatgagtgagaacatgcagtgtttggttttctgttcctgtattagtctgctgagaatgatgctttccagcttcatccatgtccctccaaaggacatgaattcattcatttctatggctgcatagtattccatggtgtatacgtgccacattttctttatccagtctatcattgatgggcatttggattggttccaagtctttactattgtaaatagtgctgcaataaacatacgtgtgctcatgtctttacagtagaatgatttataatcctttaggtatatgcccagtaatgggattgttgggtcaaatggtatttctggttctagattcttgaagagttgccacacggtcttccacaatggttgaactaacttacactcccactaacagtgtaaaagcattcctgtttttccacatcctctct---catctgttgttttctgactttttaatgatcaccattctaactggcatgagatagtatctcattgtggttttgatttgcatttctctaatgaccagtaatgatgagctttttttcatatgtttgttggccgcataaatgtcttcttttgagaagtatctgttcatatccttcggccacttttcgat-ggggttgttttttttcttgtaaatttgtttaagttcattgcaggttgtagatattagacctttatcagattgatagattgcaaaaattttctcctagtctgta-------ggaatactctgatgacacttt--------------gagctctttagtttaattagatcccatttgtcaattttggcttttgttgcaattgcttttggtgttttagtcatgaagtctttgcccatgcctatgtcctgaatgatattgcctaggttttcttc-acggtttttatggttttagattttacatttaagtctttaatccaacttgagttaa-ttttgtataaggtgcaaggaaggggtccagtttcagttttctgcatatggctagccagttttcccagtaacacttattacatagggaatcctttccccattgcttgtttttatcaggtttgtcgaagattagatggttgtagatgtgtggtgttatttctgaggccactgttctgttccattggtgtatatatctgttttgataccagtaccatgctgttttggttactgtaggcttatagtatagtttgaagtcaggtaacatgatgcctccagctttgttcttttttgcttaagattgtcttggctatacaggctctcttt-tggtaccatatgaaatttaaagtagtttttttctaattctgtgaagaaagtcaatggtagcttgatgggaatagcattgaatctatacattactttgggcagtatggccattttcatgatattgatccttcctattgataagcatggaa-tttttttccatttgtttttgtcctctctta-ttttcttgagcagtggtttgtagttctttttaaagaggtccttcacatcccttgtaagttgtattcctacgtattttattttctttgcagcaattgtgaatgggaagttcactcgtgatttggctctctgcttgtctattattggtgtatagggatgcttgtgatttttgcatatggattttgtatcctgagactttgctcaagttgattatcagcttaaggagttttggggctgagacaatggggttttaaaaatatataatcatgtcatctgtaaacag--acaatttgacttcctctcttcctgtctgagtaccttttatttctttctcttgcctgattgccctggccagaacttccaatacaatgttgaataggaatggtgagagagggtatccttgtctt-tgccagttttcaaagggaatgcttccagcttttgcccattcggtatgatattggctgtgggtttgtcttaaatagctcttattattttgaggtatttca----------------------------------------------------------------catgaatacctagtttattgagagtttttagaatgaaggggtgttgaatattattgaaggccttttctgcatctattgagataatcatatggtttttgtcactggttctgtttatgtgatagattacatttattgatttgtatatgtcaaaccagccttgtgtcccagggatgaagccaacttgattgtggtggataggctttttgatgtgctgctggatttggtttgtcagtattttattgagaatttttgcatccatgcccctcagggatattgacctga i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111487894 2752 - 210400635 AGACATAGATTTTTTTAAAATGTGGAA-TA----TAAGGCATTCCTTTCTACAA-------AAAAAAAA----AAAAACTTTAAAACCTAGTGCAT-AACCCAGTTTTACATTTCAAACTTCTAGCCAGAAGATATATATGCCTATAAAATTCCAGCCAGAATGAGTACAGTGTTCAGAAAGATGAACAAAAAT----TAATTATAGACCTCTTTTCCTAGC------------------ACAAAATACACTAGCAATCATTGTGACCTCTGGCTACAAAACATCTAAAAGTGCAAG-AATAAAGAATAAATGGATAAAATAttctt---ttttttttttttactttaagttctgggatacatgtgcagaacacgcaggtttgttacacaggtacacatgtgccatggtgctttgctgcacctatcat-ccatcatctaggttttaagcctcgcttgcattaggtatttgtcctaatactctccctcccctttcctcctacccactgacaga---------------------tccctctgtccatgtattctcattgttcaactcccacttatgagtgagagcatgtgatgtttggttttctgttcctgtgtcagtgtgctgagaatgatgctttccagcttcatccatgtccctgcaaaggacatgaa--cattcttttttatggctgcatagcattctatggtgtatatgtgccacattttctttattcagcctatcattgatgggcatttgggttggttctaagtctttgctattgtaaatattgctgaaataaacatacatgtgcatatgtctttatagtagaatgatttataatcctttgggtata--------------aatgctgggtcaaatggtatttgtggttctagatccttgaagaatcaccacattgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagcattcctatttctgcacatcttcac-cagcatctgttgtttcctgactttttaatgattaccattccaactggcatgagacggtatctcattgtggttttgatttacatttctctaatgaccagtgatgacaagctttttttcatatgtttgttggctgcataaatgtgttcttttgagaagtgtctgttaatattttttgcccactttttgat-ggggttg-ttcgtctttt-------------agttccttgtagattctggatattagccctctgtcagatggatagattgtaaaaactttctcccattctgtatattggctgttcactctga-gattgtttcttttgctgtgcagaagctctttagttttattagatcccatttgtcaattttggctttcgttgccattgcttttggtgttttagtcatgaagtctttgcccatgcctatgtcctgaatggtattgcctgggttttcttctagggtttttatggttttaggttttacatttaagtctttaatccatcatgagtcaatttttgtataaggtgtaaggaagggatccagttttggttttttgcatatggctatccagttttcccagctccatttattaaagagggaatcctttcccc-ttgcttgtttttgtcaggtttatccaagatcagatgattgtagatgtatggtgttatttctgaggccactgttttgctctactggtctatatatctgttttgctaccagtacaaagctgttttgattactgtaaccctgtattatagtttgaagttagctagcatgatgcctccagctttgttc-tttttgcttacgattatcttggatatatgggctctttttctggttccatatgaaatttaaagtag-ttttttctaattcagtgaagaaagtcaatggtagcttgatgggaatagcatcgaatctataaattactttgggcactatggccattttcacaatattgatgctacctatccatgggcatgga--ttttt---------tttgtgtcctctcaca-ttttctagagca--ggtctgtagttctttttgaagaagtcctttacatcccttataattcgtattcctaggtattttattctctttgtagcaattgtgaatgggaagaccactcatgacttggatctctgcttgtctgttattggtatataggaatgcttgtgactgttgcatattgattttgtattctgagactttgctgaagttgcttctcagcttaaggaatttgggggctgagatgattgggttttctaaataaaaaatcatgtcatctgcaaacagagacaatttgacttcctctcttcctatctgaatatcttttatttctttctcttgcctgattaccctggcgagaacttccaatactatgttgaataggagtggtgagagagggcatcattatcttgtgctggtttctaaagggaatacttccag-gtttgccaattcagtttgatattgcctatgggtttttcataaataactcttactattttgagatatgtcaaaagttattttgcattactagctcttattatttgaggtatgagctcttactattttgcagtatgtatgaataccttgtttattgagcatttttagcatgaaggggtattgaattttatcaaaggccttctctgcatctattgagataatcatgtgatttttgtcattgattctgtttatgtgatggattacatttatcagtttgcatatgttgaagccgccttgtatcttagggatgaagccaatttgattgtggtggatagtctttttgatgtgctgctggattcagtttgccagtattttattgaggatttttgcatcgatgttcatcaggaatatttgcccaa i calJac3.chr1 C 0 C 0 e rheMac3.chr15 79841036 2809 + 112192347 I e papAnu2.chr15 76970796 0 + 107442819 C e macFas5.chr15 80921022 0 + 112612857 C a score=2656600.000000 s hg38.chr9_GL383541v1_alt 164277 1202 + 171286 aattttctttttttgttgtgtctctgccaggttttggtgtcagaatgatgccggcctcataaaatgaattagggaggagtctctctttttctattgcttggaataatttcagaaggaatggtaccagctcctctttgtacctctggtagaatttggctgtgaatccatctggtcctgggctttttttggttggtaggctattaattactgccttaatttcagaacttgttattggtctattcagggattctacttcttcctgatttagtcttgggagggtgtatgtgtccaggaatttatccatttcttctagattttctagtttattttcatagaggtgtttatagtattctctgatggtagtttgtatttctgtaggatcagttgtgatattccctttatcattttttattgcatctatttgattcttctc--tgttcttttttattagtctg---agcggtctatctattttattgatcttttta--aaaaa---ccagctcctggattcactgatttttttgaagggactttcatgtctctatctccttcagctctgctctgatcttcattatttcttgtctt---ctagcttttgaatttgtttgctcttgcttgtctagttcttttaattgtgatgttagggtgtcgattttagatctttcctgctttctcctttgggcatttagtgctatacatttccctct-aatgctgctttggctgtgtcccagagattctggtacattgtgtctttgttctcattggtttcaaaacacatctttatttctgctttcattttgttgttttcccagtagtcattcaggagcgggttgttcagtttccatgtagttgtgcagttttgagtgggtttcctaatcctgagtcctaatttgattgcactgtggtctgaaagactgtttgttatgatttctgttcttttgcatttactgaggagtgttttacttccaattatgtggtcaattttagaataagtgcgatgtgttgctgagaagaatgtatattctcctgatttggggtggagagttctgtagatatctattaggtccgcttggtccagagctgagttcaagtcctgga-tatccttgttaattttctgtctcattga----tctaatactgacaatggggtgttaaagtcttccactattactgtgtgtgagtctaagtctctttgtatgtctttaggaacttgcttt s panTro4.chr9 68723691 1202 + 137840987 aattttctttttttgttgtgtctctgccaggttttggtgtcagaatgatgccggcctcataaaatgaattagggaggagtctctctttttctattgcttggaataatttcagaaggaatggtaccagctcctctttgtacctctggtagaatttggctgtgaatccatctggtcccgggctttttttggttggtaggctattaattactgccttaatttcagaacttgttattggtctattcagggattctacttcttcctgatttagtcttgggagggtgtatgtgtccaggaatttatccatttcttctagattttctagtttattttcatagaggtgtttatagtattctctgatggtagtttgtatttctgtaggatcagttgtgatattccctttatcattttttattgcatctatttgattcttctc--tgttcttttttattagtctg---agcggtctatctattttattgatcttttta--aaaaa---ccagctcctggattcactgatttttttgaagggactttcatgtctctatctccttcagctctgctctgatcttcattatttcttgtctt---ctagcttttgaatttgtttgctcttgcttgtctaattcttttaattgtgatgttagggtgtcgattttagatctttcctgctttctcctgtgggcatttagtgctatacatttccctct-aatgctgctttggctgtgtcccagagattctggtacattgtgtctttgttctcattggtttcaaaacacatctttatttctgctttcattttgttgttttcccagtagtcattcaggagcgggttgttcagtttccatgtagttgtgcagttttgagtgggtttcctaatcctgagtcctaatttgattgcactgtggtctgaaagactgtttgttatgatttctgttcttttgcatttactgaggagtgttttacttccaattatgtggtcaattttagaataagtgcaatgtgttgctgagaagaatgtatattctcctgatttggggtggagagttctgtagatatctattaggtccgcttggtccagagctgagttcaagtcctgga-tatccttgttaattttctgtctcattga----tctaatactgacaatggggtgttaaagtcttccactattactgtgtgtgagtctaagtctctttgtatgtctttaggaacttgcttt i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64874560 1201 + 135191526 aattttctttttttattgtgtctctgccaggttttggtgtcagaatgatgctggcctcataaaatgaattagggaggagtctctctttttctattgtttggaatagtttcagaaggaatggtaccagctcctctttgtacctctggtagaatttggctgtgaatccatctggtcctgggctttttttggttggtaggctattaattactgccttaatttcagaacttgttattgatctattcagggattctacttcttcctgatttagtcttgggagggtgtatgtgtccaggaatttatccatttcttctagattttctagtttattttcattgaggtgtttatagtattctctgatggtagtttgtatttctgtaggatcagttgtgatactctctttatcattttttattgcatctatttgattcttctc--ttttcttttttattagtctggctagcggtctatctactttatggatctttttt--aaaaa---ccacctcctgaattcattgatttttttgaagggactttcatgtctctatctccttcagctctgctctgatcttcattatttcttgtctt---ctagcttttgaatttgtttgctcttgcttgtctaattcttttaattgtgatgttagggtgtcgattttagatctttcctgctttctcctgtgggcatttagtaccataaatttccctct-aacactgctttggctgtgtcccagagattctggtacattgtgtctttgttctcattggtttcaaaacacatctttatttctgccttcattttgttattttcccagtagtcattcaggagcgggttgttcagtttccatgtagctgtgcagttttgagtgggtttcctaatcctgagtcctaatttgattgcactgcggtctgaaagac----tgttatgatttccgttcttttgcatttactgaggagtgttttacttccaattatgtggtcagttttagaataagtgtgatgtgttgctgaaaagaatgtatattctcctgatttggggtggagagttctgtagatatctattaggtctgcttggtccagagctgagttcaagttctgga-tatccttgttaattttctgtctcattga----tctaataccgacaatggggtgttaaagtcttccactattactgtgtgtgagtctaagtctctttgtatgtctttaagaacttgcttt i ponAbe2.chr9 C 0 C 0 s nomLeu3.chr1a 57918946 1190 - 122973662 aattttccttttttgt--tgtctctgccaggttttggtgtcagaatgatgctggcctcataaaatgagttagggaggag----tctttttctattgtttggaatagtttcagaaggaatggtaccagctcctctttgtacctctggtagaatttggctgtgaatccatctggtcctgggctttttttggttggtaggctattaattactgccttaatttcagaacttgctattggtctattcagggattctacttcttcctgatttagtcttgggagggtgtacgtgtccaggaatttatccatttcttctagattttctagtttattttcgtagaggtgttcatagtattctctgatggtagtttgtatttctgtaggatcagttgtgatattccctttatcattttttattgcatctatttgattcttctc-----tcttttctattagtctggctagcggtctat----tttattgatcttttta--aaaaa---acagctcctggattcattga-ttttttgaagggtctttcatgtctctatctccttcagctctgctctgatcttcgttatttcttgtctt---ctagcttttgaatttgtttgctcttgcttgtctagttcttttaattatgatgttagggtgtcaattttagatctttcctgctttctcctgtgggcatttagtgctataaatttccctct-aacactgctttggctgtgttccagagattctggtacattgtgtctttgttctcattggtttcaaaacacatctttatttctgccttcatttcattatgtacccagtagtcattcaggagcaggttgttcagtttccatgtagttgtgcagttttgagtgggtttcctaatcctgagtcctaatttgattgcactgcagtctgagagactgtttgttatgatttccattgttttgcatttactgaggagtg-tttacttccaattatgtggtcaattttagaataagtgcgatgtgttgctgagaagaatgtatattctcctgatttggggtggagagttctgtagatatctattaggtctgcttggtccagagctgagttcaagtcctgga-tattcttgttaattttctgtctcattga----tctaatactgacaatggggtgttaaagtcttccactattattgtgtgtgagtctaagtctctttgtatgtctttaagaacttgcttt i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80921022 1199 + 112612857 aattttc-ttttttgttgtttgtctgccaggttttggtgtcagaatgatgctggcctcataaaatgagttagggaggagtctc----tttctattgtttggaatagtttcagaaggaacgggaacagctcctctttgtacctctagtagaaatcagctgtgaatccatctggtcctgggctttttttggttggtaggctattaattactgcctcaattttagaacttgttattggtctactcagggattctacttcttcctgatttagtcttgggagggtgtatgtgtccaggaatttatccatttcttctagattttctagtttatttgtgtagaggtgtttatagtattctctgatggtagtttgtatttctgtaggatcagttgtgatatcccctttatcattttttattgcatctatttgattcttctctcttttcttctttattcgtctggctagtggtctatctattttgttgatatttttt--aaaaa---ccagctcctggattcattga-tttcttgaagggtctttcatgtctctatcttcttcagttctgctgtgatcttagttatttcctgtctt---ctagcttttgaatttgtttcctcttgcttctctagttcttttaattgtgatgttagggtgtagattttagatctttcccgctttctcctgtgggcatttagtgctataaatttccctct-aacactgctttggttgtgtcccagagattctggtacac--tgtctttgttctcattggtttcaaacaacatctttatttctgccttcattttgttattttcccagtagtcattcaggagcaggttgttcagtttccatgtagttgggcagttttgagtgggtttcgcaatcctgagtcctaatttgattgccctgtggtctgagaaat----tgttatgatttccattcttttgcatttactgaggagtgttttacttccaattatgtggtcaattttagaataagtgtgatgcgttgctgagaagaatgtatattctgttgattttgggtggagagttctgtaggtatctattaggtccacttggtccagagctgagttcaagtcctgga-tatccctgttaattttctgtctcattgatctgtctaatattgacaatggggtgttaaagtcttccactattattgtgtgtgagtctaagtctctttgtacatctctaagaacttgcttt i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76970796 1203 + 107442819 aattttc-ttttttgttgtttgtctgccaggttttggtgtcagaatgatgctggcctcataaaatgagttagggaggagtctc----tttctattgtttggaatagtttcagaaggaatggtaccagctcctctttgtacctctagtagaaatcagctgtgaatccgtctggtcctgggctttttttggttgataggctattaattactgcctcaattttagaacttgttattggtctactcagggattctacttcttcctgatttagtcttgggagggtgtatgtgtccaggaatttatccatttcttctagattttctagtttatttgtgtagaggtgtttatagtattctctgatggtagtttgtatttctgtaggatcagttgtgatatcccctttatcattttttattgcatctattttattcttctctcttttcttctttattcgtctggctattggtctatctattttgttgatatttttttaaaaaa---ccagctcctggattcattga-tttcttgaagggtctttcatgtctctatctccttcagttctgctgtgatcttagttattttctgtctt---ctagcttttgaatttgtttcctcttgcttctctagttcttttaattgtgatgttagggtgtggattttagatctttcccgctttctcctgtgggcatttagtgctataaatttctctct-aacaCTGCTTtggttgtgtcccagagattctggtacactgtgtctttgttctcattggtttcaaacaacatctttatttctgccttcattttgttattttcccagtagtcattcaggagcaggttgttcagtttccatgtagttgtgcagttttgagtgggTTTCCCAATCCTGAGTCCTaatttgattgccctgtggtctgagaaac----tgttatgatttccgttcttttgcatttactgaggagtgttttacttccaattatgtggtcaattttagaataagtgtgatgtgttgctgagaagaatgtatattctgttgattttgggtggagagttctgtaggtatctattaggtccacttggtccagagctgagttcaagtcctgga-tatccctgttaattttctgtctcattgatctgtctaatattgacaatggggtgttaaagtcttccactattattgtgtgtgagtctaagtctctttgtacatctctaagaacttgcttt i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81241924 1202 + 108555830 aattttctttttttgttgtttctctgccaggttttggtgtcagaatgatgctggcctcataaaatgagttagggaggagtctctctttttctattgtttggaatagtttcagaaggaatgggaacagctcctctttgtacctctggtagaaatcagatgtgaatccatctggtcctgggcttttttaggttggtaggctattaatcactgcctcaattttagaacttgttattggtctattcagggattctacttcttcctgatttagtcttgggaggatgtatgtgtcctggaatttatccatttcttctagattttctagtttatttgtgtagaggtgttcatagtattctctgatggtagtttgtatttctgtaggatcagttgtgatatcccctttatcattttttattgcatctattttattcttctctcttttcttctttattagtctggctagtggtctatatattttgt---tatttttt--aaaaa---ccagctcctggattcattga-tttcttgaagggtctttcatatctctatctccttcagttctgctgtgatcttagttatttcttgcctt---ctagcttttgaatttgtttcctcttgcttctctagttcttttaattgtgatgttagggtgtctattttagatctttcccgctttctcctgtgggcatttagtgctataaatttccctct-aacactgctttggttgtgtcccacagattctggtacactgtgtctttgttctcattggtttcaaaaaacatctttatttctgccttcattttgttatcttcccagtagtcattcaggagcaggttgttcagtttccatgtagttgtgcagttttgagtgggtttcccaatcctgagtcctaatttgattg-cctgtggtctgagaaac----tgttatgatttccgttcttctgcatttactgaggagtgttttacttccaattatgcggtcaattttagaataagtgcgatgtgttgctgagaagaatgtatattctgttgattttgggtgaagagttctgtagatatctattaggtccacttggtccagagctgagttcaagtcctgga-tatctctgttaattttctgcctcattgatctgtctaatattgacaatggggtgttaaagtcttccactattattgtgtgtgagtctaagtctctttgtacatctctaagaacttgcttt i chlSab2.chr12 C 0 C 0 s calJac3.chr1 111490646 1160 - 210400635 aattttctctctttgtcatgtgtctggcagattttggtatcagaatgatgctggcctcataaaatgagtttgggaggagtccctctttttctattgttaggaatagtttcagaaggaatggtaccatctcctctttgtacctctagtagaatttggctgttaatttatcaggtcctgggctttttttggttggtaggctatttattactacctcaatttcagaacttgttattggtctattcagggattcgaattcttcccggtttagttttgggagggtgtatatacccagg-atttatccttttcttctagagtttctagtttatttgcatagaggtgttcatggtattctctgat-gtagtttgtatttatgtgggatcagtagtaatatcccctttatcattttttattgtgtctatttgattcttctctcttatcttcttt----gtctggctagtggtctat----tttgttaatcttaaaa--aaaaaaagtcagctcctggattcatt---ttttttgtagggtttttcatgtctctatctccttcagttcttctc-gatcttagctatttcttgtcttctgctagcttttgaatttttttgctcttggttctccagttcttttaactgtggtgttagggtgtctatttcatatctttcccactttctgatgtgggcatttagtgctataaatttccctctcaacactgttttagctgtgtcccagagattctggtacattgtttatttgttctta--------------------------tgtcttatttttgttatttacccagtagtcattcaggagcaggttgttcagtttccatgtagctgtgtgattttgagtgaatttcttaatcctgagtttaaattgagttacactgtggtctgagagac----tgttatgatttccattctttggcgtttgctgaggagtgttttacttccaattatgtggtggattttagaataagtgctatgtggtgctgagaa-aatgcatattctgttgatttggtgaagagagt----------tctatcaggtccacttggtccagagcttagttcaagtcctgaattatctttgttaattgtatgtcttgttga----tctaataatgacagtggggtgttaaagtctttcactattattgagcgctaggctaagtctctttataggtctctaagaacttggttt i calJac3.chr1 C 0 N 0 e rheMac3.chr15 79841036 2809 + 112192347 I a score=1117505.000000 s hg38.chr9_GL383541v1_alt 165479 669 + 171286 atgaatctgggtactcctgtatttggtgcatatatatttaggatagttagctcttcttgttgcattgatccctttaccattatgtaatggcct--------tctttgtctgttttgatctttgttggtttaaagtctgttttatcagagactaggattgc-aacccttgc-tttttttttctctttgcatttgcttggtaaatattcctccatctttttattttgagcctatgtgtgtctttgcatgtgagatgagtctcctgaatacagcacactgatgggtcttgactctatccaatttgccagtctgtgtcttttaattggggcatttagcccgtttacatttaagattaatattgttatttgattctgtcattatgtgaatttgattctgtcattgtgtgaatttgattctgtcattatgatggtagctggttattgtggctgttacttgatgtagtttcttcatagtgttgatgttctttacaatttggtacgtatttgcagtagctggtactggtttttcctttccatatttagtgcttccttcaggagctcttgtagggcaagcctggtggtgacgaaatccttcagcatttgcttgtctgtaaaggattttaattctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattc s panTro4.chr9 68724893 668 + 137840987 atgaatctgggtactcctgtattgggtgcatatatatttaggatagttagctcttcttgttgcattgatccctttaccattatgtaatggcct--------tctttgtctgttttgatctttgttggtttaaagtctgttttatcagagactaggattgc-aacccttgc-ttttttttt-tctttgcatttgcttggtaaatattcctccatctttttattttgagcctatgtgtgtctttgcatgtgagatgagtctcctgaatacagcacactgatgggtcttgactctatccaatttgccagtctgtgtcttttaattggggcatttagcccgtttacatttaagattaatattgttatttgattctgtcattatgtgaatttgattctgtcattgtgtgaatttgattctgtcattatgatggtagctggttattgtggctgttacttgatgtagtttcttcatagtgttgatgttctttacaatttggtatgtatttgcagtagctggtactggtttttcctttccatatttagtgcttccttcaggagctcttgtagggcaagcctggtggtgacaaaatccttcagcatttgcttgtctgtaaaggattttaattctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattc i panTro4.chr9 C 0 C 0 s ponAbe2.chr9 64875761 628 + 135191526 atgtatctgggtactcctgtattgggtgcatatatatttaggatagttagctcttcttgttgcattgatccctttatcattatgtaatggcc------------ttgtctgttttgatctttgttggtttaaagtctgttttatcagagactaggattgc-aacccttgc-ttttttttt-tctttgcatttgcttggtaaatattcctccatcgttttattttgagcctatgtgtgtctttgcatgtgagatgagtcttctgaatacagcacactgatgggtcttgactctatccaatttgccagtctgtgtcttttaattggggcatttagcccatttacatttaagattaatattgtta------------------------------------tgtgtgaatttgattctgtcattatgatggtagctggttattttgcccgttacttgatgtagtttcttcatagtgttgatgttctttacaatttgttatgtatttgcagtagctggtactgctttttcctttccatatttagtgcttccttcaggagctcttgtagggcaggcctggtggtgacaaaatccttcagcatttgcttgtctgtaaaggattttaattctccttcgcttatgaagcttaatttggctggatatgaaattctgggttgaaaattc i ponAbe2.chr9 C 0 I 1646 s nomLeu3.chr1a 57920136 632 - 122973662 atgaatctgggtactcctgtattaggtgcatatatatttaggatagttagctcttcttgttgcattgatccctttaccattatgtaatggcct--------tctttgtctgttttgatctttgttggtttaaagtctattttatcagagactaggattgt-aacccttgc-ttttttttt-tctttgcatttgcttggtaaatattcctccatccttttattttgagcctatgtgtgtctttgcatgtgagatgagtctcctgaagacagcacatcgatgggtcttgactctatccaatttgccagtctgtgtcttttaattggggcatttagcccttttacatttaagattaatattgtta------------------------------------tgtgtgaatttgattctgtcattatgatggtagctagttattttgccctttacttgatgtagtttcttcatagtgttgatgttctttacaatttggtatgtatttgcagtggctggtactggtttttcctttccatatttagtgcttccttcaggagctcttctagggcggtcctggtggtgacaaaatccttcagcatttgcttgtctgtaaaggatttgaattctcctttgcttatgaagcttagtttggctggatatgaaattctgggttgaaaattc i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80922221 638 + 112612857 atgaatctgggtactcctgtattgagtacatatatatttaggatagttagc---tcttgttgaattgatccctttaccattatgtaatgcccttctgcccttctttgtctgttttgatcattgttggtttaaattctgctttatcagagactaggattgcaaacctttgc-ttttttttt-tctttgcatttgcttggtaaatattcctccatccttttattttgagcctatgtgtgtctttgcatgtgagatgggtctcctgaatacagcacactgatgagtcttgactctatccaatttgccagtctgtgtcttttaattggggcatttagcccatttacatttaagattaatattgtta------------------------------------tgtgtgaatttgattctgtcattatgatggtagctggttattttgcccattagttgatgtagtttcttcataatgtcaatggtctttataatttggtatgtatttgcagtggctggtactggtttttcctttccatatttagtgcttccttcaggatctcttgtagggtaggcctggtggtaacaaaatccctcagcatttgcttgtctgtaaaggattttatttctccttcacttatgaaggttggtttggctggatatgaaattcttgactgcaaattc i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76971999 642 + 107442819 atgaatctgggtactcctgtattgagtacatatatatttaggatagttagctcttcttgttgaattgatccctttaccattatataatgcccttctgcccttctttgtctgttttgatcattgttggtttaaattctgctttatcagagactaggattgcaaacccttgctttttttttt-tctttgcatttgcttggtaaatattcctccatccttttattttgagcctatgtgtgtctttgcatgtgagatgggtctcctgaatacagcacactgatgagtcttgactctatccaatttgccagtctgtgtcttttaattggggcatttagcccatttacatttaagattaatattgtta------------------------------------tgtgttaatttgattctgtcattatgatggtagctggttattttgcccattagttgatgtagtttcttcataatgtcaatggtctttataatttggtatgtatttgcagtggctggtactggtttttcctttccatatttagtgcttccttcaggatctcttgtagggtaggcctggtggtaacaaaatccctcagcatttgcttgtctgtaaaggattttatttctccttcacttatgaaggttggtttggctggatatgaaattcttgattgcaaattc i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81243126 641 + 108555830 atgaatctgggtactcctgtattgagtacatatatatttaggatagttagctcttcttgttgaattgatccctttaccattatataatgcccttctgcccctctttgtctgttttgatcattgttggtttaaattctgctttatcagagactaggattgcaaacctttgc-ttttgtttt-tctttgcatttgcttggtaaatattcctccatccttttattttgagactatgtgtgtctttgcatgtgagatgggtctcctgaatacagcacactgatgagtcttgactctatccaatttgccagtctgtgtcttttaattggggcatttagcccatttacatttaagattaatattgtta------------------------------------tgtgtgaatctgattctgccattatgatagtagctggttattttgcccattagttgatgtagtttcttcataatgtcgatggtctttataatttggtatgtatttgcagtgtctggtactggtttttcctttccatatttagtgcttccttcaggatctcttgtagggcaggcctggtggtaacaaaatccctcagcatttgcttgtctgtaaaggattttatttctctttcacttatgaagcttggtttggctggatatgaaattcttgattgcaaattc i chlSab2.chr12 C 0 C 0 e rheMac3.chr15 79841036 2809 + 112192347 I a score=898646.000000 s hg38.chr9_GL383541v1_alt 166148 706 + 171286 ttttctttaagaatgttgcatattggtccctactctcttctggcttgtagggtttctgcagagagatccactgttagtctgatgggcttccctttctaagaaacctgacctttctctgtggctgcctttaacattttttctttcatttcaaccttggagaatctgatgattatgtgtcttcatgttgctcttctcatggagtatcttagtggtgttttctgtatttcctgaatttgaatgttggcctgtcttgctaggttggggaagttctcctggataataccatgaagtatgttttccaacttggttccattcttcccctcactttcaggtacaccaatcagtcatagatttggtcttttcacatagtcccatatttcttggaggctttgatca-tctttttc-------attttttttctctaatcttgtctttatgccttatttcagtaagttgatcctcaatttctgatattctttcttctgcttgattgatttggctattgatacttgtgtatgcttcacagagttctcatgctgtg-tttttcagctccatcaggtcatttatgttcttctttaaactggttattctagttagcagttcctgtaaccttttatcaaggttctcggcttccttgcattgggttagaacatgctcctttacctcagaggaat---ttattacctatcttctgaagccgacttttgtcaatttg s panTro4.chr9 68725561 706 + 137840987 ttttctttaagaatgttgaatattggtccctactctcttctggcttgtagggtttctgcagagagatccactgttagtctgatgggcttccctttctaagaaacctgacctttctctgtggctgcctttaacaatttttctttcatttcaaccttcgagaatctgatgattatgtatcttcatgttgctcttctcatggagtatcttagtggtgttttctgtatttcctgaatttgaatgttggcctgtcttgctaggttggggaagttctcctggataatatcatgaagtatgttttccaacttggttccattcttcccctcactttcaggtacaccaatcagtcatagatttggtctttccacatagtcccatatttcttggaggctttgatca-tctttttc-------attttttttctctaatcttgtctttatgccttatttcagtaagttgatcttcaatttctgatattctttcttctgcttgattgatttggctattgatacttgtgtatgcttcacagagttctcatgctgtg-tttttcagctccatcaggtcatttatgttcttctttaagctggttattctagttagcagttcctgtaaccttttatcaaggttctcagcttccttgcattgggttagaacatgctcctttacctcagaggaat---ttattacctatcttctgaagccgacttttgtcaatttg i panTro4.chr9 C 0 C 0 s nomLeu3.chr1a 57920768 710 - 122973662 ttttctttaacaatgttgaatattggtccctactctcttctggcttgtacggtttctgcagagagatctgccattagtctgatgggcttccctttctcagaaacctgacctttctctgtggctgcccttaacaatttttctttcatttcagccttggagaatctgatgattatgtgtcttcatgttgctcttctcatggagtatcttagtggtgttttctgtacttcctgaatttgaatgttggcctgtcttgctaggttggggaaattctcctggataatatcatgaagtatgttttccaacttggttccattcttcccctcactttcaggtacaccaatcagtcataggtttggtcttttcacacagtcccatatttcttggaggctttgatcgttccttttc-------attttttttctctaatcttgtcttcatgccttatttcattaagtcgatcttcaatttctgatattctttcttctgcttgattgatttggctattgatacttatgtatgcttcacaaagttctcatgctgtg-tttttcagctccatcaggtcatttatgttcttctttaaactggttattctagttagcagttcctgtaaccttttatcaaggttctcagcttccttgcattgggttagaacatgctcctttacctcagaggagtttgttattacctattttctgaagccaacttctgtcaatttg i nomLeu3.chr1a C 0 C 0 s macFas5.chr15 80922859 710 + 112612857 ttttctttaagaatgttgaatactggcccccactctcttctggcttgtagggtttctgccgagagatccactgttagtctgataggcttccctttctaagaaatctgacctttctctgtggctgcccttaacaatttttctttcatttcaaccttgaagaatctgatgattatgtgtcttcatgttgctctgctcgtagagtatcttagtggtgttttctgtatttcctgaatttgaatgttggcctgtcttgctaggttggggaagttctccgggataatatcatgaagtgtgttttccaacttggttccattcttcccctcactttcaggtacaccaatcagtcatacgtttggtcttttcacatagtcccatacttcttggagactttgttcattccttttttaaa---tttttttttctgtaatcttgtcttcacgccatatttcagtaagttgatcttcaatttctgatattctttcttctgc----ttgatttggctattgatccttgtatatgcttcacaaagttcttgtgctgtg-tttttcagctccatcaggtcttttatgttcttctttaaactggttattgtagttagcagtttctgtaaccttttatcaaggttctcagcttccttgcattgggttagaacatgctcctttacctcagaggagtttgttattacctaccttctgaagcctacttctgccaatttg i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76972641 713 + 107442819 ttttctttaagaatgctgaatactggcccctactctcttctggcttgtagggtttctgccgagagatccactgttagtctgataggcttccctttctaagaaacctgacctttctctgtggctgcccttaacaatttttctttcatttcaaccttgaagaatctgatgattatgtgtcttcaTGTTGCTCTGCTcgtggagtatcttagtggtgttttctgtatttcctgaatttgaatgttggcctgtcttgctaggttggggaagttctccggGATAATATcatgaagtgtgttttccaacttggttccattcttcccctcactttcaggtacaccaatcagtcatacgtttggtcttttcacatagtcccatacgtcttggagactttgttcattcctttttttaaattttttttttcttgtaatcttgtcttcatgccatatttcagtaagttgatcttcaatttctgatattctttcttctgc----ttgatttggctattgatccttgtatatgcttcacaaagttcttgtgctgtg-tttttcagctccatcaggtctttTATGTTCTTCTTTAAACTGGTTATTGTAGTTAGCAGtttctgtaaccttttatcaaggttctcagcttccttgcattgggttagaacatgctcctttacctcagaggagtttgttattacctaccttctgaagcctacttctgccaatttg i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81243767 704 + 108555830 ttttctttaagaatgttgaatactggcccccactctcttctggcttgtagggtttctgccgagagatccactgttagtctgatgggcttccctttctaagaaacctgacctttctctgtggctgcccttaacaatttttctttcatttcaaccttgaagaatctgatgattatgtgtcttcatgttgctctgctcgtggagtatcttagtggtgttttctgtatttcctgaatttgaatgttggcctgtcttgctaagttggggaagttctccgggataatgtcatgaagtgtgttttgcaacttggttccattcttcacctcactttcaggtacaccaatcagtcatacgtttggtcttttcacatagtcccatacttcttggagactttgttcattcctt----------ttttttcttctgtaatcttgtcttcatgccatatttcagtaagttgatcttcaatttctgatattctttcttctgc----ttgatttggctattgatccttgtgtatgcttcacaaagttcttgtgctgtgtttttttagctccatcaggtcatttatgttcttctttaaactggttattgtagttagcagtttctgtaaccttttatcaaggttctcaacttccttgcattgggttagaacatgctcctttacctcagaggagtttgttattacctacctcctgaagcctacttctgccaatttg i chlSab2.chr12 C 0 C 0 e ponAbe2.chr9 64876389 1646 + 135191526 I e rheMac3.chr15 79841036 2809 + 112192347 I a score=109020.000000 s hg38.chr9_GL383541v1_alt 166854 58 + 171286 tcaaactcattctccatccagttttgtgcccttgctggagaagagttctgatcattta s panTro4.chr9 68726267 58 + 137840987 tcaaactcattctccatccagttttgtgcccttgctggagaagagttgtgatcattta i panTro4.chr9 C 0 I 12 s nomLeu3.chr1a 57921478 58 - 122973662 tcaaactcattctccatccaattttgtgcccttgctggagaagagttgtgatcattta i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79843845 58 + 112192347 tcaaactcattctccatccagttttgtgcccttgctggagaagagttgtgatgattta i rheMac3.chr15 I 2809 C 0 s macFas5.chr15 80923569 58 + 112612857 tcaaactcattctccatccagttttgtgcccttgctggagaagagttgtgatgattta i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76973354 58 + 107442819 tcaaactcattttccatccagttttgtgcccttgctggagaagaGTTGTGATGATTTA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81244471 58 + 108555830 tcaaactcattctccatccagttttgtgcccttgctggagaagagttgtgatcattca i chlSab2.chr12 C 0 C 0 e ponAbe2.chr9 64876389 1646 + 135191526 I a score=10390.000000 s hg38.chr9_GL383541v1_alt 166912 8 + 171286 gagaagaa s nomLeu3.chr1a 57921536 8 - 122973662 gagaagca i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79843903 8 + 112192347 gagaagca i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80923627 8 + 112612857 gagaagca i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76973412 8 + 107442819 GAGAAGCA i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81244529 8 + 108555830 gagaagca i chlSab2.chr12 C 0 C 0 e ponAbe2.chr9 64876389 1646 + 135191526 I e panTro4.chr9 68726325 12 + 137840987 I a score=333229.000000 s hg38.chr9_GL383541v1_alt 166920 187 + 171286 gcagcattgtgatttttggaattttcagca-tttttgtgctggtttttactcatcttcatggatttctctacctttgatatttgaagttgatgacttttggatggggattttgtgtgggggtcctttgtgttgatgttgatattattgttttctgtctgttagtttttcttctaacagtcaggcccct s panTro4.chr9 68726337 187 + 137840987 ttagcattgtgatttttggaattttcagca-tttttgtgctggtttttactcatcttcatggatttctctacctttgatatttgaagttgatgacttttggatggggattttgtgtgggggtcctttgtgttgatgttgatattattgttttctgtctgttagtttttcttctaacagtcaggcccct i panTro4.chr9 I 12 C 0 s nomLeu3.chr1a 57921544 180 - 122973662 gcagcattgtgatttttggaattttcagcattttttgtgatggtttttactcatcttcatggatttctctacctttgatctttgaggttgatgacttttggatggggtttttgtgtggggatcttttgtgttgatgttgatattattgttt----tctgttcgtttttcttctaa----caggcccct i nomLeu3.chr1a C 0 C 0 s rheMac3.chr15 79843911 187 + 112192347 gcagcattgtgattttttgaattttcagca-tttttgtgctggtttttcctcatcttcatgggtttctctacctttgatctttgaggctgatgacctttggatggggtttttgtgtaggggtcctttgtgttgatgttgatattattgttttctgtctgttagtttttcttctaacagtcaggcccct i rheMac3.chr15 C 0 C 0 s macFas5.chr15 80923635 187 + 112612857 gcagcattgtgattttttgaattttcagca-tttttgtgctggtttttcctcatcttcatgggtttctctacctttgatctttgaggctgatgacctttggatggggtttttgtgtaggggtcctttgtgttgatgttgatattattgttttctgtctgttagtttttcttctaacagtcaggcccct i macFas5.chr15 C 0 C 0 s papAnu2.chr15 76973420 187 + 107442819 GCAGCAttgtgattttttgaattttcagca-tttttgtgctggtttttcctcatcttcatgggtttctctacctttgatctttgaggctgatgacctttggatggggtttttgtgtgggggTCCTTTGTGTTGATGTTGATATTATTGTTTTCAgtctgttagtttttcttctaacagtcaggcccct i papAnu2.chr15 C 0 C 0 s chlSab2.chr12 81244537 187 + 108555830 gcagcattgtgattttttgaattttcagca-tttttgtgctggtttttcctcaccttcatgggtttctctacctttgatctttgaggctgatgacctttggatggggtttttgtgtgggggtcctttgtgttgatgttgatattattgttttctgtctgttagtttttcttctaacagtcaggcccct i chlSab2.chr12 C 0 C 0 e ponAbe2.chr9 64876389 1646 + 135191526 I a score=9919789.000000 s hg38.chr9_GL383541v1_alt 167107 4179 + 171286 cttctgcaggtctgctgcagtttgctggagatccattccagaccctgtttgcctgggcatcatcattggaggcagcagaacagcaaagattgctgct-tgctcctttctctggaagctttgtcccagagggccacctgccagatgccagccagagctctcctgtaagaggtgtctgtcggtccctgctgggaggtctcttccagtcaggaggcacgggagtcagggacccacttgagaaggtagtctgtcccttagcagagcttgggcactgtgctgggagaatcctccctgtcaggatccactgttctcttcagagccggcagggagggacatttaagtccactgaagctgcacccacagctaccccttcccccaggggctctgtcccagggagatgggaattttatctataagctgctgcctttctttcagagatcctgcccagtgaggagtgatctagggaggcagtctggccacaaccgctttgccacactgtggtgagttctgcccagtctgaacttcctggcctccttagcactgtccgggaaaaactgcctacacaagcctcagtaatgacggatgctcctctcacaccaaactccatcatcccaggtcaacatcagactgctatgctggcattgagaatttcaagccagtgtttcttagcttgctgggttccatgggagtgggacccactgagtgagaccacttggctccctggcttcagctccctttccaggaaagtgaacggttctgtcctgctggggttctaggcaccactcagttggaaatgcaaaaatcactcgtcttctgcataggtcttgctaggagctgcagaccagagctgttcctatttggccatcttgCCAGATTTCAATATACGCTTT------TTGTTGAGTTCTTATTGTTTATATTCCTTTACAAGTTG---TTTTTTTTTCTTTAGCTCACAACTAACATTACGATAGTTGTATTATTTTCATAACTAGCCTAGTATTTGCTTTA-----TATTTATATGTTTTTTAAATCCTAAAAAGtattctatatttattcacatatttccccattcatcttcattcctttctacatttccatgtttatctcttgaattattttcttttgtgggaagtgtttttcttttgctagaataattttcttctgtatctagctttttat-ttttgttttgtttcattttatttttggtgcatgtctgctgctga----ttctttcagtttttgtttgtctgggaatgtctttttcctttacatttgaaggatagtttttctgggaatagaattctaggtgaacaattatttccttaacagccatttatttaaagatgtaattcaactgaattctggcttccatcatatctattgagaagtcagatgtcagtcctaaaa-----ttgttttttgtttttg---tttttattttgaaa--gtactattttcctctgggtgcatttaatattttctcctcatgtttgattttcagcattttagtatgatatgtatttgtccactttgcattgttataaaggaat-atctgagatgag--aatttataaagaaaagtgttttatttggctcatggttctgcaggctctaacagcatagcaccaacatgagctcagcttctggtgaagtctcaggaagattttacttgtagcggaaggcaaacgcagagcaggcatgtcaacatggtgagacagagcaagagggaggcaggaag-gaggtgctaggctctttaaacaaccagttcttacgtgaactaatagagcaaaaactcactaatcatgaaggggatggcaccaagccattcatgagggatccactcccatgacccaaacatctcccactaggtcacacctccaacattggggatcacatttcaacatgagatttcagaggacaaatatccaaactatatcaacatgcatgtgtgtagtcttctttgtagttattctgcttgggtttcattaaatttctttaatctttgagctgagatctttcaatagttttcaaaatttcttgatctttatcttgtcaaatattgcccctgcctaactgtctctcctatctttctgagactccaattatatgtacattaaaagttcttactatgtattatatatccttcatgctctcttacaaatattttctttctttttgttctcagttctttagtttgggtattttctcttggccaatt-aaaaaattttttttgaatctt----agcgatgttcagtatgttattaaacccattaactgatttttaatttctgtaattctatttttcaattctagaatttccatttgttcatttttaaatag------ttttgagatggaatttgcattccaaataattcattttttaaagtatataattcattggttttaaatatactcatgaagctgtgtaatgct--------------------tatcactatctaattctagaacat-tttttatcacctcaaaagaaactccatacccattagtagtcactcccattccctttccctatctcttccctctttaccccacccccagaaaactactaatctactttctgtctatatagatttgcccatctagacctttcatacaaatcagatcatacaatatgtggtcttctgtatctggcttctttcactaagacaaggttttcaaggtttataaatttatcaattgatgaacatttggattgctttcattttttggctactataataatgatgctattttatttgtgaacaactttttctgtggacatatgttttcattttctttaaggtataaaccagggagtggaactgttggatcgtatggtaactctacacttaactatttaataattgccagactttttcaaagtggctgtaccattttacattcccactagcagtgtattagggtttcagtttctccatatccttgtcaacatttctcactttctcttttttattatagtcatcccaagtgggaggtggcatctcatgtctattttgtctgatattattgtagccactccagttcttttttgggaactgca-tgaatggtatatcattttccaatctttcagttgcaacttatttgtatatttgaatctaaagtgtgtctcttggagacaacatatagttggatcattttttcaattcattctaccagtctctaccatttgatcagagtgttaacaattacgatttacaattaacataattattaataaggtagaatttatgtttgcattttggcatttgttttctgtatgtattacatcttctttttgttccttta---ttctattactgtttttcatgttaaatagatattttctaatataccattttaat--tcttgttttattttactatatatttctaagttattttcttagtggttgccctagggatttcaattaacatctttaaaaaatatttttacaagtaattttttaaaatgttattattccccaaagagggtgcaccattcctggaggtactgcaata-----------cctggagtggacagagtaagctcctatcccatctccctgctccaaaaacccatttaatatagtatcctcagatagaggacatatcagatattaaacttataagaacagatactacacttgatcttagccaaaacactgagaggtgatcaaaac----aattgatttttttttttttttttttttt--------------------agaaagaagtggggtctcacatgctgtccaggctagtctcaaactcctgggctcaagccatcctctcacctcggcctcccaaagtgctgggattcaggcatgagccaccactcctggccctcaattaataac-----ttgacttaagataatctagttcatattaac------ttaatttcatagcatacaaaaactatgcttcatttcttccttccattattctatcatgaatatggcacctttttgtgttataagcccattgacacagttttataattattgctttatgcagttggttgtcttttaaatcagaagataagagaaataaaaatatacttattctgttctttatatttacctacacagttatctttattggtactttttatttcttcatacaagtttgagttactatctagtacactttgcttttagcctgaaggacttcctttagtagctagtgatgaatttagttttatttatttgagagtgtcctaagttcccttttgtttttgaagggtagatttcctgcatatagaattc s panTro4.chr9 68726524 4192 + 137840987 cttctgcaggtctgctgcagtttgctggaggtccattccagaccctgtttgcctgggcatcatcattggaggcagcagaacagcaaagattgctgcc-tgctcctttctctggaagctttgtcccagagggccacctgccagatgccagccagagctctcctataagaggtgtctgtcggtccctgctgggaggtctctcccagtcagcaggcatgggagtcagggagccacttgagaaggtagtctgtcccttagcagagcttgagcactgtgctgggagaatcctccctgtcaggatccactgttctcttcagagccggcagggagggacatttaagtccactgaagctgcacccacagctaccccttcccctaggggctctgtcccagggagatgggaattttatctataagctgctgcctttctttcagagatcctgcccagtgaggagtgatctagggaggcagtctggccacaaccgctttgccacactgtggtgagttctgcccagtctgaacttcctggcctccttagcactgtcagggaaaaactgcctacacaagcctcagtaatgacggatgctcctctcacaccaaactccatcatcccaggtcaacatcagactgctatgctggcattgagaatttcaagccagtgtttcttagcttgctgggttccatgggagtgggacccactgagtgagacaacttggctccctggcttcagctccctttccaggaaagtgaacggttctgtcctgctggggttccaggcaccactcagttggaaatgcaaaaatcactcgtcttctgcataggtcttgctaggagctgcagaccagagctgttcctatttggccatcttgCCAGATTTCAATATACGCTTT------TTGTTGAGTTGTTATTGTTTATATTCCTTTACAAGTTG----TTTTTTTTCTTTAGCTCACAACTAACATTACAATAGTTGTATTATTTTCATAACTAGCCTAGTATTTGCttta-----tatttatatattttttaaatCCTAAAAAGtattctatatttattcacatatttccccattcatcttcattcctttctacatttccaggtttatctcttgaattattttcttttgcgggaagtgtttttcttttgctagaataattttcttctgtatctagctttttat-ttttgttttgtttcattttatttttggtgcatgtttgctgctga---tttctttcagtttttgtttgtctgggaatgtctttttcctttacatttgaaggatagtttttctgggaatagaattctaagtgaacaattatttccttaacagccatttatttaaagatgtaattcaactgaattctggcttccatcatatctattgagaagtcagatgtcagtcctaaaa-----ttgttttttgtttttgtttttttttttttgaaa--gtactattttcctctgggtgcatttaatattttctcctcatgtttgattttcagcattttagtatgatatgtatttgtccactttgcattgttataaaggaat-atctgagatgag--aatttataaagaaaagtgttttatttgactcatggttctgcagtctctaacagcatagcaccaacatgagctcagcttctggtgaagtctcaggaagattttacttgtagcggaaggcaaacgcagagcaggcatgtcaacatggtgagacagagcaagagggaggcagggag-gaggtgctaggctctttaaacaaccagttcttacgtgaactaatagagcaaaaactcactaatcatgaaggggatggcaccaagccattcatgagggatccactcccatgacccaaacatctcccactaggtcacatctccaacattggggatcacatttcaacatgagatttcagaggacaaatatccaaactatatcaacatgcatgtgtgtagtcttctttgtagttattctgcttgggtttcattaaatttctttaatctttgagctgagatctttcactagttttcagaatttcttgatctttatcttgtcaaatattgcccctgcctaaccgtctctcctatctttctgagactccaattatatgtacattaaaagttcttactatgtattatatatccttcatgctctcttacaaatattttctttctttttgttctcagttctttagtttgggtattttctattggccaattaaaaaaattttttttgaatctt----agtgatgttcagtatgttattaaacccattaactgatttttaatttctgtaattctatttttcaattctagaatttccatttgttcatttttaaatag------ttttgagatggaatttacattccaaataattcattttttaaagtatataattcattggttttaaatatactcatgaagctgtgtaatgct--------------------taccactatctaattctagaacat-tttttatcacctcaaaagaaactccatacccattagtagtcactcccattccctttccctatctcttccctctttaccccacccccagaaaactactaatctactttctgtctatatagatttgcccatctagacctttcatacaaatcagatcatacaatatgtggtcttctgtatctggcttctttcactaagacaaggttttcaaggtttataaatttatcaattgatgaacatttggattgctttcattttttggctattataataatgatgctattttatttgtgaacaagtttttctgtggacatatgttttcattttcttcaaggtgtaaaccagggagtggaactgttggatagtatggtaactctatacttaactatttaataattgccagacttcttcaaagtggctgtaccattttacattcccactagcagtgtattagggtttcagtttctccatatccttgtcaacatttctcactttctcttttttattacagtcatcccaagtgggaggtggcatctcatgtctattttgtctgatattattgtagccactccagttcttttttgggaactgca-tgaatggtatatcattttccaatctttcagtttcaacttatttgtatatttgaatctaaagtgtgtctcttggagacaacatatagttggatcattttttcaattcattctaccagtctctaccatttgatcagagtgttaacaattacaatttacaattaacataattattaataaggtagaatttatgtttgcattttggcatttgttttctgtatgtattacatctactttttgttccttta---ttctattactgtttttcatgttaaatagatattttctaatataccattttaat--tcttgttttattttactatatatttctaagttattttcttagtggtcgccctagggatttcaattaacatctttaaaaaatatttttacaagtaattttaaaaaatgttattattccccaaagagggtgcaccattcctggaggtactgcaataccaggtcgatgcctggagtggacagagtaagctcctatcccatctccctgctccaaaaacccatttaatatagtatcctcagatagaggacatatcagatattaaacttataagaacagatactacacttgatcttagccaaaacactgagaggcgatcaaaac----aattga--tttttttttttttttttttt--------------------agaaagaagtggggtctcacatgctgtccaggctagtctcaaactcctgggctcaagccatcctctcacctcggcctcccaaagtgctgggattcaggcatgagccaccactcccggccctcgattaataac-----ttgacttaagataatctagttcatattaac------ttaatttcatagcatacaaaaactatgcttcatttcttccttccattattctatcatgaatatggcacctttttgtgttataagcccattgacacagttttataattattgctttatgcagttggttgtcttttaaatcagaagataagagaaataaaaatatacttattctgttctttatatttacctacacagttatctttattggtactttttatttcttcatacaagtttgagttactatctagtacactttgcttttagcctgaaggacttcctttagtagctagtgatgaatttagttttatttatttgagagtgtcatcagttcccttttgtttttgaagggtagatttcctgcatatagaattc i panTro4.chr9 C 0 N 0 s ponAbe2.chr9 64878035 4158 + 135191526 cttctgcagtactgctgcagtttgctggagg-ccattccagaccctgtttgcctgggcatcatcattgcaggcagcagaacagcaaagattgctgccttgcttctttctctggaagctttgtcccagagggccacctgccagatgccagccagagctctcctataagaggtgtctgtcggtccctgctgggaggtctctcccagtcagaaggcatgggagtcagggacccacttgagaaggtagtctgtcccttagcagagcttgagcactatgctgggagaatcctacctgtcagaatccactgctctcttcagagccggcagggagggacatttaagtccactgaagctgcacccacagctaccccttcccccaggggctctgtcccagggagatgggagttttatctataagctgctgcctttctttcagagatcctgcccagtgaggagtaatctagaaaggcagtctggccacaaccgcttta-cacactgtggtgagttctgcccagtctgaacttcctggcctccttagcactgtcagggaaaaactgcctactcaagcctcagtaatggcggatgcttctctcacaccaaactccatcatcccaggtcaacatcagactgctgtgctggcattgagaatttcaagccagcgtttcttagcttgctgggttccatgggagtgggacccactgagtgagaccacttggctccctggcttcagctccctttccaggaaagtgaacggttctgtcctgctggggttccaggcaccactcagttggaaatgcaaaaatcactcgccttctgcataggtcttgctaggagctgcagaccagagctgttcctatttggccatcttgCCAGATTTCAATATACGCTTT------TTGTTGAGTTCTTATTGTTTATATTCCTTTACAAGTTGCGTTTTTTTTTTCTTTAGCTCACAACTAACATTACGATAGTTGTATTATTTTCATAACTAGCCTAGTATTTGCtttatattttatttatatattttttaaatCCTAAAAAGtattctatatttattcacatatttccccattcatcttcattcctttctacatttccatgtttatctctttaattattttcttttgcgggaagtgtttttctttcgctagaataattttcttctgtatctagctttttat-ttttgttttgtttcattttatttttggtgcatgtctgatgctga---tttctttcagtt----tttgtctgggaatgtctttttcctttacatttgaaggatagtttttctgggaatagaattctaggtgaacaattatttcctttacagccatttatttaaagatgtaattcaactgaattctggcttccatcatatctattgagaagtcagatgtcagtcctaaaa-----ttgttttttg---------ttttttttttgaaa--gtactattttcctctgggtgcatttaatattttctcctcatgtttgattttcagcattttagtatgatatgtatttgtccactttgcattgttataaaggaat-atctgagatggggtaatttataaagaaaagtgttttatttggctcatggttctgcaggctctaacagcatagcaccaacatgaactcagcttctggtgaagtctcaggaagattttactcgtagcggaaggcaaacgcagagcaggcatgtcaacatggtgagacagagcaagagggaggcagggag-gaggtgctaggctctttaaacaaccagttcttacatgaactaatagagcaaaaactcactaatcatgaaggggatggtaccaagccattcatgagggatccacttccatgacccaaacatctcccactaggtcacacctccaacattggggatcacatttcaacatgagatttcagaggacaaatatccaaactatatcaacatgcatgtgtgtagtcttctttgtagttattctgcttgggtttcattaaatttctttaatctttgagct-agatctttcactagttttcaaaatttcttgatctttatcttgtcaaatattgcccctgcctaactgtctctcctatctttctgagactccaattatatgtacattaaaagttcttactatgtattatatatccttcgtgctctcttacaaatattttctttctttttgttctcagttctttcgtttggatattttctattggccaatt-aaaaaaatttttttgaatctt----agcgatgttcagtatgttattaaacccattaactgatttttaatttctgtaattctatttttcaattctagaatttccatttgttcatttttaaatag------ttttgagatggaatttgcattccaaataattcattttttaaagtatataattcattggttttaaatatactcatgaagccatgtaatgct--------------------taccactatctaattctagaatat-tttttatcacctcaaaagaaactccatacccattaacagtcactcccattccttttccctatctcttccctctttaccccacccccagacaactactaatctactttctgtctatatagatttgcccatctagacctttcatataaatcagatcatacaatatgtggtcttctatatctggcttctttcactaagacaaggttttcaaggtttatacatttatcaattgatgaacatttggattgctttcattttttggctattataataatgatgctattttatttgtgaacaagtttttctgtagacatatgttttcattttctttaaggtataaaccagggagtggaactgttggattgtatggtaactctatacttaactatttaataattaccagactttttcaaagtggctgtaccattttacattcccactagcagtgtattagggtttcagtttctccatatccttgtcaacatttctcactttctcttttttattatagtcatcccaagtgggaggtggcatctcatgtccattttgtctgatattattgtagccactccagttcttttttgggaactgca-tgaatggtatatcattttccaatctttcagtttcaacttatttgtatatttgaatctaaagtgtgtctcttggagacaacatatagttggatcattttttcaattcattctagcaatctctaccatttgatcagagtgttaacaattacaatttacaattaacataattattaataaggtagaatttatgtttgcattttggcatttgttttctgtatgtattacatcttctttttgttccttta---ttctattactgtttttcatgttaa----atattttctaatataccattttaat--tctcgttttattttactatatatttctaagttattttcttagtggttgtcctagggatttcaattaacatctttaaaaaatatttttacaagtaatttttaaaaatgttactattccccaaaggtggtgcaccattcctggaggtactgcaataccaggttgatgcctgaagtggacagagtaagctcctatcccatctccctgctccaaaaacccatttaatatagtatcctcagatagaggacatatcagatattaaacttttaagaacagatactacacttgatcttagccaaaacgctgaaaggtgatcaaaac----aattga-------------tttcttttt--------------------agaaagaagtggggtctcacatgctgtccaggctagtctcaaactcctgggctcaagccatcctctcacctcggcctcccaaagtgctgggattcaggcataagccaccactcccagccctc----aataac-----t----------taatctagttcatattaac------ttaatttcatagcatacaaaaactatgcttcatttcttccttccattattctatcatgaatatggcacctttttgtgttataagcccattgacacagttttgtaattattgctttatgtagttggttgtcttttaaatcagaagataagagaaataaaaatatacttattctgttctttatatttacctacagagttatctttattggtactttttatttcttcatacaaatttgagttactatctagtacactttgcttttaacctgaaggacttcctttagtagctagtgatgaatttagttttatttatttgagagtgtcataagttcccttttgtttttgaagggtagatttcctgcatatagaattc i ponAbe2.chr9 I 1646 N 0 s nomLeu3.chr1a 57921724 4182 - 122973662 cttctgcaggtctgctgcagtttgctggaggtccattccagaccctgtttgcctgggcatcaccactggaggcagcagaacagcaaagaatgctgac-tgctcccttctctggaagctttgtcccaga-ggccacctgccagatgccagccagagctctcctatcagaggtgcctgtcggcccctgctgggaggtctctcccagtcaggaggcatgggagtcagggacccacttgagaaggtagtctgtcccttagcagagcttgagcactgtgctgggagaatcctccctgtcaggatccactgctctcttcagagccagcagggagggacatttaagtccactgaagctgcacccacagccaccccttcccccaggggctctgtccgagggagatgggagttttatctataagctgctgcctttctttcagagatcctgcccagtgaggggtaatctagagatgcagtctggccacaacggctttgccacactgtggtgagttctgcccagtctatacttcctggcctccttagcactgtcagggaaaaactgcctacacaagcctcagtaatggcggatgctcctctcacaccaaactccatcatcccaggtcaacttcagattgctgtgctggcattgagaatttcaagccagtgtttcttagcttgctgggttccgtgggagtggaacccactgagtgagaccacttggctccctggcttcagctccctttccaggaaagtgaacggttctgtcctgctggggttccaggcaccactcggttggaaatgcaaaaatcactggccttctgcataggtcttgctaggagctgcagaccagagctgttcctatttggccatcttgccagATTTCAATATACGCTTTTTGTTGTTGTTGAGTTCTTATTGTTTATATTCCTTTACTAGTTG--TGATTTTTTTCTTCAGCCCACAACTAACATTACGATAGTTGTATTATTTTTTTAACTACCCTAGtattttctttatattttatttatatattttttaAATCCTAAGAAGtattctatatttattcacatatttccccattcatcttcattcctttctacatttccatgtttatctcttgaattattttcttttgcgggaagTGTTTTTCTTTTGCTAGAATAATTTTCTTCTGTATCTAGCTTTTTAT-TTTTGTTTTGTTTCATTTTATttttggtgcatgtctgctgctgatgatttctttcagtttttgtttgtctgggaatgtctttttcctttacatttgaaggatagtttttctgggaatagaattctaggtaaacaattatttccttatcagccacttatttaaagatgtaattcaactgaattctggcttccatcatatctattgagaagtcagatgtcagtcctaaaa-----ttgttttttgt--------ttttgtttttgaaa--gtactattttcctctgggtgcatttaatattttctcctcatgtttgattttcagcattttagtatgatatgtatttgtccactttgcattattataaaggaataatctgagatggggtaatttataaagagaagtgttttatttggctcatggttctgcaggctctaacagcatggcaccaatgcgagctcagcttctggtaaagtctcaggaagattttactcgtagcggaaggcaaacacagggcaggcatgtcaacatggtgagacagagcaagagggaggcagggag-gaggtgctaggctctttaaacaaccagttcttacatgaactaatagagcaaaacctcactaatcatgaagggcatggcaccaagccattcatgacggatccactcccatgacccaaacacctcccactaggtcacacctccaacgctggggatcacatttcaacatgagatttcagaggacaaatatccaaactatatcaacatgcatgtgtgtag---tctttgtagttattctgcttgggtttcattaaacttctctaatctttgagctgagatctttcactagttttcaaaatttcttgatctttatcttgtcaaatattgcccctgcctaattgtctctcctatctttctgagactccaattatatgtacattaaaagttcttactatgtattatatatccttcatgctgtcttacaaatattttctttctttttgttctcagttctttagtttggatattttctattggccaatt-aaaaaaagttttttgaatctt----agcgatgttcagtatgttattaaacccattaactgacttttaatttctgtaattctatttttcaattctagaatttccatttgttcatttttaaatag------ttttgagatggaatttgcattccaaataattcatttttttaagtatataattcattggttttaaatatactcatgaagctgtgtaatgct--------------------taccactgtctaattctagaacat-tttttatcacctcaaaagaaactccacacccattagcagtcactcccattccctttccctatctcttccctctttaccccacccccagacaactactaatctactttctgtctatatagatttgcccatctagagctttcatataaatcagatcatacaatatgtggtcttctgtatctggcttctttcactaagacaagattttcaaggtttatacatttatcaattgatgaacatttggattgctttcattttttggctattataataatgatgccattttatttgtgaacaagtttttctgtggacatatgttttcattttctttaaggtataaaccagggaatggaactgttggatcatatggtaactctatacttaactatttaataattgccaaactttttcaaagtggctgtaccattttacattcccactagcagtgtattagggtttcagtttctccatatccttgtcaacatttctcactttctcttttttattatagtcatcccaagtgggaggtggcatctcatgtccattttgtctgatattattgtagccactccagttctcttttgggaactgcattgaatggtatatcattttccaatctttcagtttcaacttatttgtatatttgaatctaaagtgtgtctcttggagacaacatatagttggatcattttttcaattcattctaccaatctctactatttgatcagagtgttaacaattacaatttacaattaacataattattaataaggtagaatttatgtttgcattttggaatttgttttctgtatgtattacatcttctttttgttccttta---ttctattactgtttttcatgttaaatagatattttctaatataccattttaattctcttgttttattttactatatatttctaagttattttcttagtggttaccctagggatttcaattaacatctttaaaaaatatttttacaagtaatttttaaaaacgttattattccccaaagggggtgcaccattcctggaggtactgcaataccaggtcgatgcctggagtggacagagtaagctcctatcccatctccctgctccaaaaacccatttaatatagtatcctcagatagaggacatatcagatattaaacttataagaacagataatacacttgatcttagccagaacgctgagaggtgatcaaaac----aattga------------tttttttttt--------------------agaaagaagtggggtctcacatgttgtccaggctagtctcaaactcctgggctcaagccatcctctcacctcagcctgccaaagtgctgggatttaggcatgagccaccactcccggccctcaattaataac-----t-----taagataatctagttcatattaac------ttaatttcatagcctacaaaaactatgcttcatttcttccttccattattctatcatgaatatggcacctttttgtgttacaagcccattgacacagttttataattattgctttatgcagttggttgtcttttaaatcagaagataagagaaataaaaatatacttattctgttctttatatttacctacacatttatctttattggtactttttatttcttcatacaaatttgagttactatctagtacacttcgcttttagcctgaaggacttcctttagtagctagtg----atttagttttatttatttgagagtatcataagttcccctttgtttttgaagggtagatttcctgcatatagaattc i nomLeu3.chr1a C 0 N 0 s rheMac3.chr15 79844098 4206 + 112192347 cttctgcaggtctgctgcagtttgctggcgggccactccagaccctgtttgactgggtatcaccactggagccgccagaacagcaaagattcctgcc-tgctcctttctctagaagctttgtcctggagaggcacctgccagatgccagccagagctctcctataagaggtgtctgttggcccctgctgagaggtctctcccagttaggaggcatgagagtcagggacccacttgagaaagtagtctgtcccttagcagagcttgagcactgtgctgggagaatcctccctgtcaggatacactgctttcttcagagctggcagggagggatatttaagtctgctgaagttgcacccacagccaccccttcccccaggggctctgtcccagggagatgggagttttatctataagctgctacctttctttcagagatcctgcccaacgaggagtaatttagagaggcagtctggccagagctgctttgccacactgtggtgagttctgcccagtctgaacttcctggtttccttagcattgtcagggaaaaactgcctacacaagcctcagtaatggtggatgc-cccctcacatcaaactccatcatcccaggtcaacttcagactactgtgctggcattgagaatttcaagccagtgtttcttagcttgctgggttccgtgggagtgggacccactgagtgagaccacttggctccctggtttcagtcccctttctaggaaagtgaacggttctgtcctgctggggttctgggtaccactcagttggaaatgcaaaaatcacccgccttctgcattggtcttgctggaagctgcagaccagagctgttcctatttggccatcttgCCAGATCTCAATATACGCTTTTCATTGTTGTTGAGTTCTTACTGTTTGTATTCCTTTACTAGTTGTGT---TTTTTTCTTTAGCCCACAACTAACATTATGATAGTTGTATTATTTTCATAACTACCCTAGTATTTGCtttatattttatttacat-ttttttaaatCCTAAAAagtattctatatttagtcacatatttccccattcatcttcattcctttctacatttctatgtttatctcttgaattattttctttggtgggaagtgtttttctttttctagaagaattttcttctgtatctagctttttat-ttttgttttgtttcattttggttttggtgcatgtctgctgctga---tttctttcagtt----tttgtttgggaatgtctttttcctttacatttgaaggatagtttttctgagaatagaattctaggtgaacaattattttcttatcagccatttatgtaaagatataattcaactgaattctggtttccatcatatctattgagaagtcagatgtcagtcctaaaa---------tttt-----------ttttttttttgaaagtgtactattttcctctgggtgcttttaatatttactcctcatgtttgattttcagcattttagtatgatatgtatttgtccattttgcattgttataaaggaat-atctgagatggggtaatttataaagaaaagtgttttatttggctcatggttctgcaggctctaaccgcatggcaccaacatgagctcatcttctggtgaagtctcaggaagattttactcatagcagaaggcaaaggcagagcaggcatgtcaacatggtgagacagaataagagggaggtgggaagtgaggtgctaggctctttaaacaaccagttcttacatgaactaatagagcaaaaacttactaatcatgaaggggatggcaccaagtcattcatgagggatcgactcccatgacccaaacagctcccacta-gtcacacctccaacactggggatcacatttcaacatgagatttcagaggacaaatatccaaaccatatcaacatgcatgtgtgtagtcttctttgtagttattctgcttgggtttccttaaatttctttaatctttgagccgagatctttcactagttttcaaaatttcttgatctttttcttgtcaaatattgccccggcctaattctctctcctatctttctgagactccaattatagatacattaaaagttcttactatgtattatatatacttcatgctctcttacaaatattttctttctttttgttctcagttctttagtttggctattttctattggccaatt-taaaaa-cttttttgaatctttctcagcaatgttcagtatgttattaaacccattaattgatttttaatttctgtaattctatttttcaattctagaatttccatttgttcatttttaaatagtagatttattgagatggaatttgcattccaaataattcattttttaaagtatataattcaatggttttatatttactcatgaagctgtgtgatgcccctatctaattctagatagatgccactatctaattctagaacatatttttatcacctcaaaagaaactccatatccattagcagtcactcccattccctttccccatctcttccctctttaccccatccccagacaactactaatctactttctatctatatagatttgcccatctagacctttcatataaatcagatcatacaatatgcggtcttctgtatctggcttctttcactaagacaaggttttcaaggtttatacatttatcgattgatgaacatttggattgctttcattttttagctattataataatgatgctattttatttgtgaacaagtttttctgtggacatatgttttcattttctttaaggtataaaccagggagtggaattgttggatcgtatggtaactctatacttaactatttaataattgccagactttttcaaagtggctgcaccattttacattccaactagcagtgtattagggtttcagtttctccatatccttgtcaacatttctaactttctcttttttattatagtcatcccaagtgggagatggcaactcatgtccattttgtctgatattattata-----tccagttatcttttgggaactgca-tgaatggtatatcattttccaatctttcagtttcaacttatttgtatatttgaatctaaagtgtgtctcttggagacaacatatcgttggatcattttttcaattcattctaccaatctctaccatttgatcagagtgtta--aat--ccatttacaattaacataattattaataaagtagaatttgtgtttgcatttcggcatttgttttctgtatgtgctacatcttctttttgttcctttattcttctattactgttttttatgttaaatagatattttctaatataccattttaattctcttgttctattttactatatatttctaagttattttcttagtggttgccctagggatttcaattaacacctttaaaaaatatttttacaagtaatttttaaaaatgt---tatctcccaaagggggtgcaccatttctggaggtactaaaatatcaggtcaatgcctggagtggacagagtaagctcctatcccatctccctgctccaaaaacccatttaatatagtatcctcagatagaggacatatcagatattaagcttataagaacagatactacacttgatcttagccaaaacactgagaggtgatcaa-------attttt----ttgttttttttttttttt-------------aaattaaaaaaagaagtggggtctcacatgttgtccaggctagtctcaaactcctgggctcaagccattttctcaccttgccctcccaaagtgctgggattcaggcatgagccaccacttctggccctcaattaacaac-----t-----taagataatctagttcatattaata-----ttaatttcacagcacacaaaaactatgcttcatttcctccttctattattctatcacgaatatggcacctttttgtgttataagcccattgacacagttttgtaattattgctttatgcagttggttgtcttttaaatcag-atagaagataaataaaaatatacttattctgttctttatatttacccacacagttatctttactggtactttttatttcttcatacaaatttgagttactatctagtaccctttgcttttagcctgaaggacttcctttagtagctggtgatgaatttagttttatttatttgagagtgtcataagttcccctttgcttctgaaaggtagatttcctgcatatagaattc i rheMac3.chr15 C 0 N 0 s macFas5.chr15 80923822 4213 + 112612857 cttctgcaggtctgctgcagtttgctggaggtccactccagaccctgtttgcctgggtatcaccactggaggcagcagaacagcaaagattgctgcc-tgctcctttctctagaagctttgtcccggaggggcacctgccagatgccagccagagctctcctataagaggtgtctgttggcccctgctgagaggtctctcccagttaggaggcatgagagtcagggacccacttgagaaagtagtctgtcccttagcagagcttgagcactgtgctgggagaatcctccctgtcaggatacactgctttcttcagagctggcagggagggatatttaagtctgctgaagttgcacccacagccaccccttcccccaggggctctgtcccagggagatgggagttttatctataagctgctacctttctttcagagatcctgcccaacgaggagtaatttagagaggcagtctggccagagctgctttgccacactgtggtgagttctgcccagtctgaacttcctggtttccttagcactgtcagggaaaaactgcctacacaagcctcagtaatggtggatgc-cccctcacatcaaactccatcatcccaggtcaacttcagactactgtgctggcattgagaatttcaagccagtgtttcttagcttgctgggttccgtgggagtgggacccactgagtgagaccacttggctccctggtttcagtcccctttctaggaaagtgaacggttctgtcctgctggggttctgggtaccactcagttggaaatgcaaaaatcacccgccttctgcattggtcttgctggaagctgcagaccagagctgttcctatttggccatcttgccagATCTCAATATACGCTTTTCATTGTTGTTGAGTTCTTACTGTTTGTATTCCTTTACTAGTTGTGTTTCTTTTTTCTTTAGCCCACAACTAACATTATGATAGTTGTATTATTTTCATAACTACCCTAGTATTTGCTTTATATTTTATTTACAT-TTTTTTAAATCCTAAAAAGTATTCtatatttagtcacatatttccccattcatcttcattcctttctacatttctatgtttatctcttgaattattttctttggtgggaagtgtttttctttttctagaagaattttcttatgtatctagctttttat-ttttgttttgtttcattttggttttggtgcatgtctgctgctga---tttctttcagtt----tttgtttgggaatgtctttttcctttacatttgaaggatagtttttctgagaatagaattctaggtgaacaattattttcttatcagccatttatgtaaagatataattcaactgaattctggtttccatcatatctattgagaagtcagatgtcagtcctaaaa--------ttttt-----------ttttttttttgaaagtgtactattttcctctgggtgcttttaatatttactcctcatgtttgattttcagcattttagtatgatatgtatttgtccattttgcattgttataaaggaat-atctgagatggggtaatttataaagaaaagtgttttatttggctcatggttctgcaggctctaaccgcatggcaccaacatgagctcatcttctggtgaagtctcaggaagattttactcatagcagaaggcaaaggcagagcaggcatgtcaacatggtgagacagaataagagggaggtgggaagtgaggtgctaggctctttaaacaaccagttcttacatgaactaatagagcaaaaacttactaatcatgaaggggatggcaccaagtcattcatgagggatcgactcccatgacccaaacagctcccacta-gtcacacctccaacactggggatcacatttcaacatgagatttcagaggacaaatatccaaaccatatcaacatgcatgtgtgtagtcttctttgtagttattctgcttgggtttccttaaatttctttaatctttgagccgagatctttcactagttttcaaaatttcttgatctttttcttgtcaaatattgccccggcctaattctctctcctatctttctgagactccaattatagatacattaaaagttcttactatgtattatatatatttcatgctctcttacaaatattttctttctttttgttctcagttctttagtttggctattttctattggccaatt-taaaaa-tttttttgaatctttctcagcaatgttcagtatgttattaaacccattaattgatttttaatttctgtaattctattttgcaattctagaatttccatttgttcatttttaaatagtagatttattgagatggaatttgcattccaaataattcattttttaaagtatataattcaatggttttatatatactcatgaagctgtgtgatgcccctatctaattctagatagatgccactatctaattctagaacatatttttatcacctcaaaagaaactccatatccattagcagtcactcccattccctttccccatctcttccctctttaccccatccccagacaactactaatctactttctatctatatagatttgcccatctagacctttcatataaatcagatcatacaatatgtggtcttctgtatctggcttctttcactaagacaaggttttcaaggtttatacatttatcgattgatgaacatttggattgctttcattttttagctattataataatgatgctattttatttgtgaacaagtttttctgtggacatatgttttcattttctttaaggtataaaccagggagtggaattgttggatcgtatggtaactctatacttaactatttaataattgccagactttttcaaagtggctgcaccattttacattccaactagcagtgtattagggtttcagtttctccatatccttgtcaacatttctaactttctcttttttattatagtcatcccaagtgggagatggcaactcatgtccattttgtctgatattattata-----tccagttctcttttgggaactgca-tgaatggtatatcattttccaatctttcagtttcaacttatttgtatatttgaatctaaagtgtgtctcttggagacaacatatcgttggatcattttttcaattcattctaccaatctctaccatttgatcagagtgtta--aat--ccatttacaattaacataattattaataaagtagaatttgtgtttgcatttcggcatttgttttctgtatgtgctacatcttctttttgttcctttattcttctattactgttttttatgttaaatagatattttctaatataccattttaattctcttgttctattttactatatatttctaagttattttcttagtggttgccctagggatttcaattaacacctttaaAAAATATTTTTACAAGTAATTTTTAAAAATGT---TATCTCCCAAAGGGggtgcaccatttctggaggtactaaaatatcaggtcaatgcctggagtggacagagtaagctcctatcccatctccctgctccaaaaacccatttaatatagtatcctcagatagaggacatatcagatattaagcttataagaacagatactacacttgatcttagccaaaacactgagaggtgatCAAAAC----AATTGT----TTtttttttttttttttt-------------aaatttaagaaagaagtggggtctcacatgttgtccaggctagtctcaaactcctgggctcaagccattttctcaccttgccctcccaaagtgctgggattcaggcatgagccaccacttctggccCTcaattaacaac-----t-----taagataatctagttcatattaata-----ttaatttcacagcacacaaaaactatgcttcatttcctccttctattattctatcacgaatatggcacctttttgtgttataagcccattgacacagttttgtaattattgctttatgcagttggttgtcttttaaatcag-atagaagataaataaaaatatacttattctgttctttatatttacccacacagttatctttactggtactttttatttcttcatacaaatttgagttactatctagtaccctttgcttttagcctgaaggacttcctttagtagctggtgatgaatttagttttatttatttgagagtgtcataagttcccctttgcttctgaaaggtagatttcctgcatatagaattc i macFas5.chr15 C 0 N 0 s papAnu2.chr15 76973607 4226 + 107442819 cttctgcaggtctgctgcagtttgctggaggtccactccagaccctgtttgcctgggtatcaccactGGAGGcagcagaacagcaaagattgctgcc-tgctcctttctCTAGAAGCTTTGTCctggaggggcacctgccagatgccagacAGAGCTCTCCTATaagaggtgtctgttggcccctgcTGAGAGGTCTCTCCCAATTAGGAGGCatgagggtcagggacccacttgagaaggtagtctgtcccttagcagagcttgagcactgtgctgggagaatcctcCCTGTCAGGATACACTGctttcttcagagctggcagggagggatatttaagtctgctgaagttgcacccacagccaccccttcccccaggggctctgtcccagggagatgggagttttatctataagctgctacctttctttcagagatcCTGCCCAACGAGGAGTAATTTAGAGAGGAAGTCTGGCCAGAGCTGCTTTGCCACACTGTGGTGAGTTCTGCCCAGTCTGAACTTCCTGGTTTCCTTAGCACTGTCAGGGAAAAACTGCCTAcacaagcctcagtaatggtggatgc-cccctCACATCAAACTCCatcatcccaggtcaacttcagactacTGTGCAGGCATTGAGAATTTCCAGCCAGTgtttcttagcttgctgggtcccatgggagtgggacccactgagtgagaccacttggctccctggtttCAGTCCCCTTTCTAGGAAAGTGAACGGTTCTGTCCTGCTGGGGTTCCGGGTACcactcagttggaaatgcaaaaatcacccgccttctgcattggtcttgctggaagctgcagaccagagctgttcctatttggccatcttgccagatcTCAATATACGCTCTTCATTGTTGTTGAGTTCTTACTGTTTGTATTCCTTTACTagttgtgttt-cttttcctttagccCACAACTAACATTATGATAGTTGTATTATTTTCATAACTACCctagtatttgctttatattttatttacat-ttttttaaatcctaaaaagTATTCTATATTTAGTCACATATTTCCCCATTCATCTTCATTCCTTTCtacatttctatgtttatctcttgaattattttctttggtgggaagtgtttttctttttctagaagaattttcttctgtatctagctttttat-ttttgttttgtttcattttgtttttggtgcatgtctgctgctga---tttctttcagtt----tttgtttgggaatgtctttttcctttacatttgAAGGATAGTTTTTCTGAGAATAGAATTCTAGGTGaacaattattttcttatcaGCCATTTATGTAAAGATATAATTCAACTGAATTCTGGTTTCCATCATATCTATTGAGAAGTCAGATGTCAGTcctaaaattgttttgttttt-----------ttttttttttgaaagtgtaCTATTTTCCTCTGGGTGCTTTTAATATTTACTCCTCATGTTTGATTTTCAGCATTTTAGTATGatatgtatttgtccattttgcattgttataaaggaat-atctgagatggggtaatttataaagaaaagtgttttatttgGCTCA-GGTTCTGTAGGCTCTAACAGCATGGCACCAACATGAGCTCATCTTCTGGTGAAGTCTCAGGAAGATTTtactcatagcagaaggcaaaggcagAGCAGGCatgtcaacatggtgagacagaacaagagggaggtggggagggaggtgctaggctctttaaacaaccagttcttACATGAACTAATAGAGCAAAAACTCACTAATCATGAAGGGGatggcaccaagtcattcatgagggatcgactcccatgacccaaacagctCCCACTA-GTcacacctccaacattggggatcacatttcagcatgagatttcagaggacaaatatccaaaccatatcaacatgcATGTGTGTAGTCTTCTTTGTAGTTATTCTGCTTGGGtttcattaaatttctttaatctTTGAGCCGAGATCTTTCActagttttcaaaatttcttgATCTTTTTCTTGTCAAATATTGCCCCGGCCTAATTCTCTCTCCTATCTTTCTGAGACTCCAATTATAGGTACATTAAAAGTTCttactatgtattatatatacttcATGCtctcttacaaatattttctttctttttgttctcagtTCTTTAGTTTGGATATTTTCTATTggccaatt-taaaaa-tttttttgaatctTTCTCAGCAATATTCAGTATGTTATTAAAcccattaattgatttttaatttctgtaattctatttttcaattctagaattcccatttgttcatttttaaatagtagatttattgagatggaatttgcattccaaataattcattttttaaagtatataattcaatggTTTTAAATATACTCATGAAGCTGTGTGATGCCCCTATCTAATTCTAGGTAGATGCCactatctaattctagaacatatttttatcacctcaaaagaaactccatatccattagcagtcactcccattCCCTTTCCCCATCTCTTCCCTCTTTACCCCATCCCCAGacaactactaatctactttctatctatATAGATTTGCCCATCTAGACCTTTCATATAAATCagatcatacaatatgtggtcttctgtatctggcttctttcactaagaCAAAGTTTTCAAGGTTTATACATTTATCGAtagatgaacatttggattgctttcattttttagctattataataATGATGCTATTTTATTTGTGAACAAGTTTTtctgtggacatatgttttcattttctttaaggtATAAACCagggagtggaattgttggatcgtATATTAACTCTATACTTAACTATTTAATAATTGCCAGactttttcaaagtggctgcaccattttacattccaactAGCAGTGTATtagggtttcagtttctccatatccttgtcaacatttctaactttctcttttttattatagtcatccCAAGTGGGAGATGGCAACTCATGtccattttgtctgatattattaTA-----TCCAGTTCTCTTTTGGGAACTGCA-TGAATGG--TATCATTTTCCAATCTTTCAGTTTCAActtatttgtatatttgaatCTAAAGTGTGTCTCTTGGAGACAACATATCGTTGGATCATTTTTTCAATCCATTCTACCAATCTCTACCATTTGATCAGAGTGTTA--AAT--CCATTTACAattaacataattattaataaagtaGAATTTGTGTTTGCATTTCAgcatttgttttctgtatgtgctacatcttctttttgttcctttattcttctattactgttttttatgttaaatagatattttctaatataccattttaattctgttgttttattttactatatatttctaagttattttcttagtggttgcccTAGGGATTTCAATtaacacctttaaaaaatatttttacaagtaatttttaaaaatgt---tatctccCAAAGGGGGTGCACCATTTCTGGAGGTACTAAAATATCAGGTCAATGCCTGGAGTGGACAGAGTAAGCTCCTATCCCATCTCCCTGCTCCAAAAACCCATTTAATATAGTATCCTCAGATAGAGGACATATCAGATATTAAGCTTATAAGAACAgatactacacttgatcttagccaaaacaCTGAGAGGCGATCAAAacaattggtttt----tttttttttttttttttt-------------ttttttaagaaagaagtgGGGTCtcacatgttgtccaggctagtctcaaactcctgggctcaagccattttctcaccttgccctcccaaagtgctgggattcaggcatgagccaccacttctggcccTCAATTAACAAC-----T-----TAAGATAATCTAGTTCATATTAATATTAACTtaatttcacagcacacaaaaaCTATGCTTCATTTCCTCCTTCTATTATTCTATCATGAATATGGCACCTTTTTGTGTTATAAGCCCATTGACACAGTTTTGTAATTATTGCTTTATGCAGTTGGTTGTCTTTTAAATCAg-atagaagataaataaaaatatacttattctGTTCTTTATATTTACCCACACAGTTATCTTTACtggtactttttatttcttcatacaaATTTGAGTTACTATCTAGTACCCTTTGCTTTTAGCCTGAAGGACTTCCTTTAGTAGCTGGTGatgaatttagttttatttatttgagagtgTCATAAGTTCCCCTTTGCTTCTGAAGGGTAGATTTCCTGCATATAgaattc i papAnu2.chr15 C 0 N 0 s chlSab2.chr12 81244724 4207 + 108555830 cttctgcaggtctgctgcagtttgctggaggtccattccagacccggtttgcctgggtatcaccactggaggcagcagaacagcaaagattgctgcc-tgctcctttctctagaagctttgtcccggagaggcacctgccagatgccagccagagctctcctataagaggtgtctgttggcccctgctgagaggtctctcccagttaggaggcatgagagtcaggaccccacttgagaaggtagtctgtcccttagcagagcttgagcactgtgctgggagaatcctccctgtcaggatccactgctttcttcagagttggcagggaaggatatttaagtctgctgaagttgcatccacagccaccccttctcccaggggctctgtcccagggagatgggagttttatctataagctgctacctttctttcagagatcctgcccaacaaggagtaatttagagaggcagtctggccagagctgctttgccacactgtggtgagttctgcccagtctgaacttcctggtttccttagcactgtcagggaaaaactgcctacacaagcctcagtaatggtggatgc-cccctcacaccaaactccatcatcccaggtcaacttcagactattgtgctggcattgagaattttaagccagtgtttcttagcttgctgggttccgtgggagtgggacccactgagtgagaccacttggctccctggtttcagtcccctttctaggaaaatgaacggttctgtcctgctggggttccaggtaccactcagttggaaatgcaaaaatcacccgccttctgcattggtcttgctagaagctgcagaccagagctgttcctatttggccatcttgccagATCTCAATATACGCTTTTTGTTGTTGTTGAGTTCTTACTGTTTGTATTCCTTTACTAATTGTGTTTCTTTTTTCTTTAGCCCACAACTAACATTATGATAGTTGTATTATTTTCATAACTACCCTAATATTTGCTTTATATTTTATTTACAT-TTTTTTAAATCCTAAAAagtattctatatttattcacatatttccccattcatcttcattcctttctacatttccatgtttatctcttgaattattttctttggtgggaagtgtttttctttttctagaagaattttcttctgtatctagctttttttgttttgttttgtttcatttcctttttggtgcatgtctgctgctga---tttctttcagtt----tttgtttgggaatgtctttttcctttacatttgaaggatagtttttctgggaatagaattctaagtgaacaattattttcttatcagccatttatgtaaagatataattcaactgaattctggtttccatcatatctattgagaagtcagatgtccgtcctaaaa-------------------------tttttttttgaaagtgtactattttcctctgggtgctttcaatattta---ctcatgtttgattttcagcattttagtatgatatgtatttgtccattttgcattgttataaaggaat-atctgagatggggtaatgtataaagaaaagtgttttatttgactcatggttctgcaggctctaacagcatggcaccaacataagctcatcttctggtgaagtctcaggaagattttactcatagcagaaggcaaaggcagagcaggcatgtcaacatggtgagacagaacaagagggaagtggggagggaggtgctaggctctttaaacaaccagttcttacatgaactaatagagcaaaaactcactaatcatgaaggggatggcaccaagtcattcatgagggattgactcccatgacccaaacagctcccacta-gtcacacctccaacattggggatcacatttcaacatgagatttcagaggacaaatatccaaaccatatcaacatgcatgtgtgtagtcttctttgtaattattctgcttgggtttcattaaatttctttaatctttgagctgagattgttcactagttttcaaaatttcttgatctttttcttgtcaaatattgcctctgcctaattctctctcctatctttctgagactctaattataggtacattaaaagttcttactatgtattatatatacttcatgctctcttacaaatattttctttctttttgttctcagttctttagtttggatattttctattggccaatt-taaaaa-tttttttgaatctttctcagcaatgttcagtatgttattaaacccattaattgatttttaatttctgtaattctatttttcaattctagaatttccatttgttcatttttaaatagtagatttattgagatggaatttgcattccaaataattcattttttaaagtatacaattcaatggttttaaatatactcatgaagctgtgtgatgcccctatctaattctagatagatgccactatctaattctacaacatatttttatcacctcaaaagaaactccatagccattagcagtcactcccattccctttccccatctcttccctctttaccccatccccagacaactactaatctactttctatctatatagattg-------tgggccttccatataaatcagatcatacaatatgtggtcttctgtatctggcttctttcactaagacaaggttttcaaggtttatacatttatcaattgatgaacatttggattgctttcattttttagctattataataatgatgctattttatttgtgaacaagtttttctgtggacatatgttttcattttctttaaggtgtaaaccagggagtggaattgttggatcatatggtaactctatacttaactatttaataattgccagactttttcaaagtggctgcaccattttacattcccactggcagtgtattagagtttcagtttctccatatccttgtcaacatttctaactttctcttttttattatagtcatcccaagtgggagatggcaactcatgtccattttgtctgatattattata-----tccagttctcttttgggaactgca-tgaatggtatatcattttccaatctttcagtttcaacttatttgtatatttgaatctaaagtgtatctcttggagacaacatatcgttggatcattttttcaattcattctaccaatctctaccatttgatcagagtgtta--aat--ccatttacaattaacataattattaataaagtagaatttgtgtttgcatttcagcatttgttttctgtatgtgctaca---tatttttgttcctttattcttctattactg-tttttatgttaaatagatattttctaatataccattttaattctcttgttttattttactatatatttctaagttattttcttagtgattgccctagggatttcaattaacacctttaaAAAATATTTTAACAAGTAATTTTAAAAAATGT---TATCTCCCAAAGGGggtgcaccatttctggaggtactaaaatatcaggtcaatgcctggagtggacagagtaagttcctatcccatctccctgctccaaaaacccatttaatatagtatcctcagatagaggacatatcagatattaagcttataagaacagatactacacttgatcttagccaaaacgctgagaggtgatCAAAAC----AATTG--------------CTTTTTTTTaaaaaaaaaaaaaaaaaaaaagaaagaaatggggtctcacatgttgtccaggctaatctcaaactcctgggctcaagccattttctcaccttgccctcccaaagtgctgggattcaggcatgagccaccactcctggccCTcaattaacaacttgatt-----taagataatctagttcatattaatattaacttaatttcacagcacacaaaaactatgcttcatttcttccttctattattctatcatgaatatggcacctttttgtattataagcccattgacacagttttgtaattattgctttatgcagttggttgtcttttaaatcag-atagaagataaataaaaatatacttattctgttctttatatttacctacacagttacctttattggtactttttatttcttcatacaaatttgagttactatctagtactctttgcttttagcctgaaggacttcctttagtagctggtgatgaatttagttttatttatttgagagtgtcataagttcccctttgcttctgaagggtagatttcctgcatatagaattc i chlSab2.chr12 C 0 N 0