##maf version=1 scoring=roast.v3.3 a score=13600.000000 s hg38.chr12_KI270834v1_alt 0 1 + 119498 C s panTro5.chr12 127286065 1 + 137163284 C i panTro5.chr12 N 0 C 0 s panPan2.chr12 125637100 1 + 135337776 C i panPan2.chr12 N 0 C 0 s gorGor5.CYUI01015152v1 8149754 1 - 8369578 C i gorGor5.CYUI01015152v1 N 0 C 0 s nomLeu3.chr10 97798213 1 + 106955855 C i nomLeu3.chr10 N 0 C 0 s rheMac8.chr11 123856520 1 + 133663169 C i rheMac8.chr11 N 0 C 0 s macFas5.chr11 128164715 1 + 137757926 C i macFas5.chr11 N 0 C 0 s macNem1.NW_012010578v1 10569821 1 - 16319837 C i macNem1.NW_012010578v1 N 0 C 0 s cerAty1.NW_012001186v1 12191979 1 + 20526591 C i cerAty1.NW_012001186v1 N 0 C 0 s chlSab2.chr11 119164915 1 + 128539186 C i chlSab2.chr11 N 0 C 0 s manLeu1.NW_012103587v1 475561 1 + 6255621 C i manLeu1.NW_012103587v1 N 0 C 0 s colAng1.NW_012116043v1 4541574 1 - 8658521 C i colAng1.NW_012116043v1 N 0 C 0 s calJac3.chr9 114741927 1 + 124281992 C i calJac3.chr9 N 0 C 0 s saiBol1.JH378194 388937 1 - 9212255 C i saiBol1.JH378194 N 0 C 0 s cebCap1.NW_016107484v1 2803147 1 + 4466143 C i cebCap1.NW_016107484v1 N 0 C 0 s aotNan1.NW_018491581v1 1500054 1 + 5364348 C i aotNan1.NW_018491581v1 N 0 C 0 s otoGar3.GL873618 4235482 1 + 7922563 C i otoGar3.GL873618 N 0 C 0 a score=881896.000000 s hg38.chr12_KI270834v1_alt 1 71 + 119498 TTTTCTTGTTGTTTT--AGATCCTTGTAGTCAACCTCTTGTTTGTGAATTTCAGGTAGTTGTAGATAGATGGG s panTro5.chr12 127286066 71 + 137163284 TTTTCTTGTTGTTTT--AGATCCTTGTAGTCAACCCCTTGTTTGTGAATTTCAGGTAGTTGTAGATAGATGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637101 71 + 135337776 TTTTCTTGTTGTTTT--AGATCCTTGTAGTCAACCCCTTGTTTGTGAATTTCAGGTAGTTGTAGATAGATGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8149755 71 - 8369578 TTTTCTTGTTGTTTT--AGATCCTTGTAGTCAACCCCTTGTTTGTGAATTTCAGGTAGTTGTAGATAGATGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798214 71 + 106955855 TTTTCTTGTTGTTTT--AGATCCTCGTAGTCAACCCCTTGTTTGTGAATTTCAGGTAGTTGTAGATAGATGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123856521 71 + 133663169 TTTTCTTGTTGTTTT--AGATCCTTGTAGTCAACCCCTTGTTTGTGAATTTCAGGTAGTTGTAGATAGATGGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128164716 71 + 137757926 TTTTCTTGTTGTTTT--AGATCCTTGTAGTCAACCCCTTGTTTGTGAATTTCAGGTAGTTGTAGATAGATGGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10569822 71 - 16319837 TTTTCTTCTTGTTTT--AGATCCTTGTAGTCAACCCCTTGTTTGTGAATTTCAGGTAGTTGTAGATAGATGGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12191980 71 + 20526591 TTTTCTTGTTGTTTT--AGATCCTTGTAGTCAACCCCTTGTTTGTAAATTTCAGGTAGTTGTAGATATATGGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119164916 71 + 128539186 TTTTCTTGTTGTTTT--AGATCCTTGTAGTCAACCCCTTGTTTGTGAATTTCAGGTAGTTGTAGATAGATGGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 475562 71 + 6255621 TTTCCTTATTGTTTT--AGATCCTTGTAGTCAACCCCTTGTTTGTAAATTTCAGGTAGTTGTAGATATATGGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4541575 71 - 8658521 TTTTCTTGTTGTTTT--AGATCCTTGTAGTCAACTTGTTGTTTGTGAATTTCAGGTAGTTGTAGATAGATGGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114741928 71 + 124281992 TTTTCTTGTTGTTTT--AGATACTTCTAGTCAACCCCTCGTTTGTGAATTTCAGATAGTTATAGATCGGTGGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 388938 71 - 9212255 TTTTCTTGTTGTTTT--AGATCCTTCTGGTCAACCCCTCGTTTGTGAATTTCAGATAGTTGTAGATCGATGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2803148 71 + 4466143 TTTTCTTGTTGTTTT--AGATCCTTCTAGTCAACCCCTCGTTTGTGAATTTCAGATAGTTGTAGATCGATGGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500055 71 + 5364348 TTTTCTTGTTGTTTT--AGATCCTTCCAGTCAACCCCTCGTTTGTGAATTTCAGATACTTGTAGATCGATGGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4235483 73 + 7922563 TTTTGTTTTTGTTTTAGAGATCCTTGTAGTCAATCCTCTATGGCTGAATCTGAGGTAGTTGTGGATAGATGGG i otoGar3.GL873618 C 0 I 592 s canFam3.chr26 33106537 71 - 38964690 TTTGTTTGTAGTTTT--GGAACCAGTAATCCATACTTCCTTTTGTGAATTTGAGGTTTTTGTAGATAGATGGG i canFam3.chr26 N 0 I 3 s dasNov3.JH568189 775276 66 - 1116856 TTTTGTTACTGTTTT--ATACCTTAA-----AATCCTTCAATTGTGTATTTGAGGTTGTTGTAGATATATGGG i dasNov3.JH568189 N 0 C 0 a score=62769.000000 s hg38.chr12_KI270834v1_alt 72 5 + 119498 TAATA s panTro5.chr12 127286137 5 + 137163284 TAATA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637172 5 + 135337776 TAATA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8149826 5 - 8369578 TAATA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798285 5 + 106955855 TAATA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123856592 5 + 133663169 TAATA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128164787 5 + 137757926 TAATA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10569893 5 - 16319837 TAATA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192051 5 + 20526591 TAATA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119164987 5 + 128539186 TAATA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 475633 5 + 6255621 TAATA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4541646 5 - 8658521 TAATA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114741999 5 + 124281992 AAATA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 389009 5 - 9212255 AAATA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2803219 5 + 4466143 AAATA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500126 5 + 5364348 AAATA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4236148 5 + 7922563 TAGTA i otoGar3.GL873618 I 592 C 0 s canFam3.chr26 33106611 5 - 38964690 TAATA i canFam3.chr26 I 3 C 0 s dasNov3.JH568189 775342 5 - 1116856 TAATA i dasNov3.JH568189 C 0 I 95 a score=44460.000000 s hg38.chr12_KI270834v1_alt 77 5 + 119498 CTTTA s panTro5.chr12 127286142 5 + 137163284 CTTTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637177 5 + 135337776 CTTTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8149831 5 - 8369578 CTTTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798290 5 + 106955855 CTTTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123856597 5 + 133663169 TTTTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128164792 5 + 137757926 CTTTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10569898 5 - 16319837 CTTTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192056 5 + 20526591 CTTTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119164992 5 + 128539186 CTTTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 475638 5 + 6255621 CTTTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4541651 5 - 8658521 CTTTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114742004 5 + 124281992 ATTTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 389014 5 - 9212255 ATTTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2803224 5 + 4466143 ATTTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500131 5 + 5364348 ATTTA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4236153 5 + 7922563 TTTTC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33106616 5 - 38964690 TTTGC i canFam3.chr26 C 0 C 0 e dasNov3.JH568189 775347 95 - 1116856 I a score=488423.000000 s hg38.chr12_KI270834v1_alt 82 44 + 119498 AAATATCTGAACGTGACTAAGAGTCAAGAACTTGCTCTCCTTGT s panTro5.chr12 127286147 44 + 137163284 AAATATCTGAACGTGACTAAGAGTCAAGAACTTGCTCTCCTTGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637182 44 + 135337776 AAATATCTGAACGTGACTAAGAGTCAAGAACTTGCTCTCCTTGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8149836 44 - 8369578 AAATATCTGAACGTGACTAAGAGTCAAGAACTTGCTCTCCTTGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798295 44 + 106955855 AAATATCTGAACGTGACTAAGAGTCAAGAACTTGCTCTCCTTGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123856602 42 + 133663169 AAATGTCTGAACGTGAC--AGAGTCAAGAACTTGCTCTCCTTGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128164797 42 + 137757926 AAATGTCTGAACGTGAC--AGAGTCAAGAACTTGCTCTCCTTGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10569903 42 - 16319837 AAATGTCTGAACGTGAC--AGAGTCAAGAACTTGCTCTCCTTGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192061 42 + 20526591 AAATGTCTGAATGTGAC--AGAGTCAAGAACTTGCTCTCCTTGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119164997 42 + 128539186 AAATGTCTGAACATGAC--AGAGTCAAGAACTTGCTCTCCTTGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 475643 42 + 6255621 AAATGTCTGAACGTGAC--AGAGTCAAGAACTTGCTCTCCTTGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4541656 42 - 8658521 AAATGTCTGAACGTGAC--AGAGTCAAGAACTTGCTCTCCTTGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114742009 44 + 124281992 AAATATCTGAATGTGACTGAGAGTCAAGAATTTGCCCCCCTCGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 389019 44 - 9212255 AAATATCTGAACGTGACTCAGAGGCAAGAACTTGCTCCCCTTAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2803229 44 + 4466143 AAATATCTGAATGTGACTCAGAGTCAAGAACTTGCCCCCCTTGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500136 44 + 5364348 AAATACCTGAATGTGACTGCGAGTCAGAAACTTGCCCCCCTTGT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4236158 42 + 7922563 AAATGGCTGAGCATGAC--TAAGGTAAGTATTTGCTCTTCCTGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33106621 44 - 38964690 AAAGAAGGGAGCACGACCAGGGGTTAAGCGCTGGCTCCCCTGGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 775442 44 - 1116856 aAAGAGCTGAGCAGGAGCAAGAATTAAGAATTTGCTCTCCCTGT i dasNov3.JH568189 I 95 I 451 a score=10470.000000 s hg38.chr12_KI270834v1_alt 126 2 + 119498 TG s panTro5.chr12 127286191 2 + 137163284 TG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637226 2 + 135337776 TG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8149880 2 - 8369578 TG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798339 2 + 106955855 TG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123856644 2 + 133663169 TG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128164839 2 + 137757926 TG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10569945 2 - 16319837 TG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192103 2 + 20526591 TG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165039 2 + 128539186 TG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 475685 2 + 6255621 TG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4541698 2 - 8658521 TG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114742053 2 + 124281992 TG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 389063 2 - 9212255 CG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2803273 2 + 4466143 CA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500180 2 + 5364348 CG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4236200 2 + 7922563 CA i otoGar3.GL873618 C 0 I 5 s canFam3.chr26 33106665 1 - 38964690 C- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 775937 2 - 1116856 tg i dasNov3.JH568189 I 451 C 0 a score=524142.000000 s hg38.chr12_KI270834v1_alt 128 40 + 119498 CATTTCCAAAGGGGTCTTTGTT--------GATGGAGCTGTTCCTTGC s panTro5.chr12 127286193 40 + 137163284 CATTTCCAAAGGGGTCTTTGTT--------GATGGAGCTGTTTCTTGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637228 40 + 135337776 CATTTCCAAAGGGGTCTTTGTT--------GATGGAGCTGTTTCTTGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8149882 40 - 8369578 CATTTCCAAAGGGGTCTTTGTT--------GATGGAGCTGTTTCTTGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798341 40 + 106955855 CATTTCCAAAGGGGTCTTTGTT--------GATGGAGCTGTTTCTTGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123856646 40 + 133663169 CATTTCCAAAGAGGTCTTTGTT--------GATGGAGTTGTTTCTTGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128164841 40 + 137757926 CATTTCCAAAGGGGTCTTTGTT--------GATGGAGTTGTTTCTTGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10569947 40 - 16319837 CATTTCCAAAGGGGTCTTTGTT--------GATGGAGTTGTTTCTTGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192105 40 + 20526591 CATTTCCAAAGGGGTCTTTGTT--------CATGGAGTTGTTTCTTGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165041 40 + 128539186 CATTTCCAAAGGGGTCTTTGTT--------GATGGAGTTGTTTCTTGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 475687 40 + 6255621 CATTTCCAAAGGGGTCTTTGTT--------CATGGAGTTGTTTCTTGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4541700 40 - 8658521 CATTTCCAAAGGGGTCTTTGTT--------GATGGAGTTGTTTCTTGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114742055 39 + 124281992 CGTTTCCAAAGGGGTC-TTGTT--------GATGGAGCTGTTCCTTGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 389065 39 - 9212255 CGTTTCCAAAGGGGTC-TTGTT--------GATGGGGCTGTTTCTTGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2803275 39 + 4466143 CGTTTCCAAAGGGGTC-TTGTT--------GATGGAGCTGTTTCTTGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500182 39 + 5364348 CGTTTCCAAAGGGGTC-TTGTT--------GATGGAGCTGTTTCTTGC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6671254 38 - 9870158 CATTTCCGAAGGGGTC-TTGTT--------GATGGAA-TGTTTCTTGC i proCoq1.NW_012154285v1 N 0 C 0 s otoGar3.GL873618 4236207 39 + 7922563 CATTTCCAAAGGGGTC-TCGTT--------GATGGAACCATTTCTTGC i otoGar3.GL873618 I 5 C 0 s canFam3.chr26 33106666 31 - 38964690 --------AGAGGGTC-TTATT--------GACAGGACTATTTCTCAT i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 775939 48 - 1116856 cttcccCTAAGGGATCTTAATCAACAAGAAGAAGGAACTATTTCTTGT i dasNov3.JH568189 C 0 C 0 a score=17637.000000 s hg38.chr12_KI270834v1_alt 168 3 + 119498 --ACG s panTro5.chr12 127286233 3 + 137163284 --ACG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637268 3 + 135337776 --ACG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8149922 3 - 8369578 --ACG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798381 3 + 106955855 --ATG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123856686 3 + 133663169 --ATG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128164881 3 + 137757926 --ATG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10569987 3 - 16319837 --ATG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192145 3 + 20526591 --ATG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165081 3 + 128539186 --ATG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 475727 3 + 6255621 --ATG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4541740 3 - 8658521 --ATG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114742094 3 + 124281992 --ACG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 389104 3 - 9212255 --ACG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2803314 3 + 4466143 --ACG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500221 3 + 5364348 --GCG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6671292 3 - 9870158 --ACA i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4236246 3 + 7922563 --ATG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124765493 3 + 151834684 --ATG i mm10.chr5 N 0 C 0 s canFam3.chr26 33106699 1 - 38964690 --A-- i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 775987 3 - 1116856 AAA-- i dasNov3.JH568189 C 0 C 0 a score=4429160.000000 s hg38.chr12_KI270834v1_alt 171 231 + 119498 TTTCCAGGTTGCAAAAGAAGAATGGTCTCAGACCCTTTGGATCAACCTGAATGTGCAGATTCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCTCTCAGAAAGCTACCTCGGCCAGTCCGTGGCTTATCAGTGACCTACTACTTGGAAGCAAAAATGAAGGCATTCAAAGACTCGATTCCTTTACTTCTTGACTTGAAAAACGAGGCACTAAGAGACAGGTTTGTTTTGTC s panTro5.chr12 127286236 231 + 137163284 TTTCCAGGTTGCAAAAGAAGAATGGTCTCAGACCCTTTGGATCAACCTGAATGTGCAGATTCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCTCTCAGAAAGCTACCTCGGCCAGTCCGTGGCTTATCAGTGACCTACTACTTGGAAGCAAAAATGAAGGCATTCAAAGACTCGATTCCTTTACTTCTTGACTTGAAAAACGAGGCACTAAGAGACAGGTTTGTTTTGTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637271 231 + 135337776 TTTCCAGGTTGCAAAAGAAGAATGGTCTCAGACCCTTTGGATCAACCTGAATGTGCAGATTCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCTCTCAGAAAGCTACCTCGGCCAGTCCGTGGCTTATCAGTGACCTACTACTTGGAAGCAAAAATGAAGGCATTCAAAGACTCGGTTCCTTTACTTCTTGACTTGAAAAACGAGGCACTAAGAGACAGGTTTGTTTTGTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8149925 231 - 8369578 TTTCCAGGTTGCAAAAGAAGAATGGTCTCAGACCCTTTGGATCAACCTGAATGTGCAGAATCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCTCTCAGAAAGCTACCTCGGCCAGTCCGTGGCTTATCAGTGGCCTACTACTTGGAAGCAAAAATGAAGGCATTCAAAGACTCGATTCCTTTACTTCTTGACTTGAAAAACGAGGCACTAAGAGACAGGTTTGTTTTGTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798384 231 + 106955855 TTTCCAGGTTGCGAAAGAAGAATGGTCTCAGACCCTTTGGATCAACCTGAATGTGCAGATTCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCTCTCAGAAAGCTACCTCGGCCAGTCCGAGGCTTATCAGTGGCCTACTACTTGGAAGCGAAAATGAAGGCATTCAAAGACTCGATTCCTTTACTTCTTGACTTGAAGCACGAGGCACTAAGAGACAGGTTTGTTTTGTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123856689 231 + 133663169 TTTCCAGGTTGCAAAAGAAGAATGGTCTCAGACCCTTTGGATCAATCTGAATGTGCAGATTCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCTCTCAGAAAGCTACCTCGGTCAGTCCGTGGCTTATCAGTGGCCTACTACTTGGAAGCGAAAATGAAGGCATTCAAAGACTCAATTCCTTTACTTCTTGACTTGAAACATGAGGCACTAAGAGACAGGTTTGTTTTGTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128164884 231 + 137757926 TTTCCAGGTTGCAAAAGAAGAATGGTCTCAGACCCTTTGGATCAATCTGAATGTGCAGATTCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCTCTCAGAAAGCTACCTCGGTCAGTCCGTGGCTTATCAGTGGCCTACTACTTGGAAGCGAAAATGAAGGCATTCAAAGACTCAATTCCTTTACTTCTTGACTTGAAACATGAGGCACTAAGAGACAGGTTTGTTTTGTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10569990 231 - 16319837 TTTCCAGGTTGCAAAAGAAGAATGGTCTCAGACCCTTTGGATCAATCTGAATGTGCAGATTCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCTCTCAGAAAGCTACCTCGGTCAGTCCGTGGCTTATCAGTGGCCTACTACTTGGAAGCGAAAATGAAGGCATTCAAAGACTCAATTCCTTTACTTCTTGACTTGAAACATGAGGCACTAAGAGACAGGTTTGTTTTGTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192148 231 + 20526591 TTTCCAGGTTGCAAAAGAAGAATGGTCTCAGACCCTTTGGATCAATCTGAATGTGCAGATTCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCTCTCAGAAAGCTACCTCGGTCAGTCCGTGGCTTATCAGTGGCCTACTACCTGGAAGCGAAAATGAAGGCATTCAAAGACTCAATTCCTTTACTTCTTGACTTGAAACATGAGGCACTAAGAGACAGGTTTGTTTTGTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165084 231 + 128539186 TTTCCAGGTTGCAAAAGAAGAATGGTCTCAGACCCTTTGGATCAATCTGAATGTGCAGATTCTCCAGGAGGGAATTGAAGGTTTTCTCAAGGCTCTCAGAAAGCTACCTCGGTCAGTCCGTGGCTTATCAGTGGCTTACTACTTGGAAGCGAAAATGAAGGCATTCAAAGACTCAATTCCTTTACTTCTTGACTTGAAACATGAGGCACTAAGAGACAGGTTTGTTTTGTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 475730 231 + 6255621 TTTCCAGGTTGCAAAAGAAGAATGGTCTCAGACCCTTTGGATCAATCTGAATGTGCAGATTCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCTCTCAGAAAGCTACCTCGGTCAGTCCGTGGCTTATCAGTGGCCTACTACTTGGAAGCGAAAATGAAGGCATTCAAAGACTCAATTCCTTTACTTCTTGACTTGAAACATGAGGCACTAAGAGACAGGTTTGTTTTGTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4541743 231 - 8658521 TTTCCAGGTTGCAAAAGAAGAATGGTCTCAGACCCTTTGGATCAATCTGAATGTGCAGATTCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCTCTCAGAAAGCTACCTCGGTCAGTCCGTGGCTTATCAGTGGCCTACTACTTGGAAGCGAAAATGAAGGCATTCAAAGACTCAATTCCGTTACTTCTTGACTTGAAACATGAGGCACTAAGAGACAGGTTTGTTTTGTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114742097 231 + 124281992 TTTCCAGGCTGCAAAAGAAGAATGGTCTCAGACCCTTTGGATCAACCTGAATGTGCAGTTTCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCGCTCAGAAAGCTACCTCGGCCAGTCCGTGGCCTATCGGCGGCCTACTACTTGGAAGCAAGAATGAAGGCATTCAAAGACTCGATTCCTTTACTTCTTGACTTGAAACACGAGGCACTAAGAGACAGGTTTGTTTTGTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 389107 231 - 9212255 TTTCCAGGCCGCGAAAGAAGAATGGTCTCAGACCCTTTGGATCAACCTGAATGTGCAGTTTCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCTCTCAGAAAGCTGCCTCGGCCAGTCCGTGGCTTATCAGTGGCCTACTACTTGGAAGCAAAAATGAAGGCATTCAAAGACTCGATTCCTTTACTTCTTGACTTGAAACACGAGGCACTAAGAGACAGGTTTGTTTTGTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2803317 231 + 4466143 TTTCCAGGCTGCAAAAGAGGAATGGTCTCAGACCCTTTGGATCAACCTGAATGTGCAGTTTCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCTCTCAGAAAGCTACCTCGGCCAGTCCGTGGCTTATCAGTGGCCTACTACTTGGAAGCAAAAATGAAGGCATTCAAAGACTCGATTCCTTTACTTCTTGACTTGAAACACGAGGCACTAAGAGACAGGTTTGTTTTGTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500224 231 + 5364348 TTTACAGGCTGCAAAAGAAGAATGGTCTCAGACCCTTTGGATCAACCTGAATGTGCAGTTTCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCCCTCAGAAAGCTCCCTCGGCCAGTCCGTGGCTTATCAGTGGCCTACTACTTGGAAGCAAAAATGAAGGCATTCAAAGACTCGGTTCCTTTACTTCTCGACTTGAAACACGAGGCACTAAGAGACAGGTTTGTTCTGTC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9418972 231 - 31815103 TTTCCAGGTTGCAAAGGAAGAGTGGTCTCAGACCCTCTGGGCCAACCTGAACGTGCAGTTTCTCCAGGAAGGAATTGAAGGTTTTCTCAAGTCTCTCAGAAAGCTGCCCCGGGCGGTCCGCGGCCTGTCGGTGGCCTACCATTTGGAAGTGAAAATGAAGGCGTTCAAAGACTCCATTCCTTTACTTCTCGACTTGAAACACGAGGCACTAAGAGACAGGTGTGTTTTGCC i micMur3.chr21 N 0 C 0 s proCoq1.NW_012154285v1 6671295 231 - 9870158 TTTCCAGATTGCAAAGGAAGAATGGTCTCAGACCCTCTGGGCCAACCTGAATGTGCAGTTTCTCCAGGAAGGAATCGAAGGTTTTCTCAAGGCTCTCAGAAAGCTGCCTCGGCCGGTCCGCAGCCTGTCAGTGGCCTACCATTTGGAGATGAAAATGAAGGCATTCAAAGACTCCATTCCTTTACTTCTTGACTTGAAACACGAGGCACTAAGAGACAGGTTTGTTTTGTC i proCoq1.NW_012154285v1 C 0 I 2284 s otoGar3.GL873618 4236249 231 + 7922563 TTTCTAGGCTGCAAAAGAAGAATGGTCTCAGACCCTTTGGGCCAACCTGAATGTGCAGTTTCTCCAAGAAGGGATTGAAAGTTTTCTCAAGGCTCTCAGGAAGCTGCCTCGGTCAGTCCGCAACTTGTCAGTGGCCTACTATTTGGAAGCAAGAATGAAGGCATTCAAAGACTCAATTCCTTTGCTTCTTGACTTGAAACACGAGGCACTAAGAGACAGGTTTGTTTTGTC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124765496 231 + 151834684 TTTCTAGCTTGCCAAAGAGGAATGGTCCCAGACCCTCTGGATCAACCTGAATGTCCAGTATCTGCAGGAAGGTATCGAGGGCTTCCTCAAGAACCTCCGCAAGCTGCCACGGCAGGTGCGCGGCTTGTCCGTGGCCTTCCATTTGGAAGTGAAGATGAAGGCGTTCAAAGACTCCATCCCCCTGCTTCTGGACCTGAAGCATGAGGCCCTGCGAGAGCGGTTAGTTTCATC i mm10.chr5 C 0 C 0 s canFam3.chr26 33106700 231 - 38964690 TTTCCAGGTTGCAAAAGAAGAATGGTCTCAGACCCTCTGGATCAACCTGAATATTCAGTTCCTCCAGGAAGGAATTGAAGGTTTTCTCAGGTCTCTTAGAAAGCTACCCCGGCAGGTCCGAAACCTTTCAGTGGCCTACCATTTAGAAGCAAAAATGAAGGCATTCAAAGACTCGATTCCTCTACTTCTTGACTTAAAGCATGAAGCACTAAGAGACAGGTTTGTTTCATC i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 775990 231 - 1116856 TTTCCAGGTTGCAAAAGAAGAATGGTCTCAGACACTGTGGATCAACCTCAATGTTCAGTTTCTTCAGGAAGGAATTGAAAGTTTCCTCAAGGCTCTCAGAAAACTACCTCGGCAGGCCCGTGGCTTATCAGTGGCCCACTACCTGGAAGCAAGAATGAAAGCATTCAAAGACTCGATTCCTTTACTTCTTGACTTGAAACATGAAGCACTAAGAGACAGGTTTGTTTTTAT i dasNov3.JH568189 C 0 C 0 a score=63884.000000 s hg38.chr12_KI270834v1_alt 402 10 + 119498 CTCTGTCCGC s panTro5.chr12 127286467 10 + 137163284 CTCTGTCCAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637502 10 + 135337776 CTCTGTCCGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8150156 10 - 8369578 CTCTGTCCGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798615 10 + 106955855 CTCTGTTTGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123856920 10 + 133663169 CTCTGTCCAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128165115 10 + 137757926 CTCTGTCCAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10570221 10 - 16319837 CTCTGTCCAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192379 10 + 20526591 CTCTGTCCAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165315 10 + 128539186 CTCTGTCTGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 475961 10 + 6255621 CTCTGTCCAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4541974 10 - 8658521 CTCTGTCCGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114742328 9 + 124281992 TGCTATCCG- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 389338 9 - 9212255 TGCTGTCCG- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2803548 9 + 4466143 TGCTGTCCG- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500455 9 + 5364348 TGCTGTCCG- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9419203 10 - 31815103 CCCTGCGAGC i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4236480 10 + 7922563 CTCTACGAGC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124765727 10 + 151834684 CTCCATCAGC i mm10.chr5 C 0 I 2613 s canFam3.chr26 33106932 9 - 38964690 TGTTACCTG- i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 776221 10 - 1116856 CTCTGTAAAC i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I a score=302436.000000 s hg38.chr12_KI270834v1_alt 412 24 + 119498 AGATGTAAAAGTGTGGGAGGAGCT s panTro5.chr12 127286477 24 + 137163284 AGATGTAAAAGTGTGGGAGGAGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637512 24 + 135337776 AGATGTAAAAATGTGGGAGGAGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8150166 24 - 8369578 AGATGTAAAAGTGTGGGAGGAGCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798625 24 + 106955855 GGATGTGAAAATGTGGGAGGAGCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123856930 24 + 133663169 GGATGTGAAAGTGTGGGAGGAACT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128165125 24 + 137757926 GGATGTGAAAGTGTGGGAGGAACT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10570231 24 - 16319837 GGATGTGAAAGTGTGGGAGGAACT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192389 24 + 20526591 GGATGTGAAAGTGTGGGAGGAACT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165325 24 + 128539186 GGATGTGAAAGTGTGGGAGGAACT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 475971 24 + 6255621 GGATGTGAAAGTGTGGGAGGAACT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4541984 24 - 8658521 AGATGTGAAAGTGTGGGAGGAACT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114742337 24 + 124281992 GGATGGGAAAGTGTGGGAGGAGCT i calJac3.chr9 C 0 I 277 s saiBol1.JH378194 389347 24 - 9212255 GGATGGGAAAGTGTGGGAGGAGCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2803557 24 + 4466143 GGATGGGAAAGTGTGGGAGGAGCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500464 24 + 5364348 GGATGGGAAAGTGTGGGAGGAGCT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9419213 24 - 31815103 CGACGGGAAAGTGTGGAAGGAACT i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4236490 24 + 7922563 CTATGTGAAAGCGTGAAAGGAGCC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33106941 19 - 38964690 --TTGTGTAA--GGGGGAGGAGT- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 776231 24 - 1116856 TGACATGAAAATATGGGAACAACT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I a score=15561.000000 s hg38.chr12_KI270834v1_alt 436 1 + 119498 T s panTro5.chr12 127286501 1 + 137163284 T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637536 1 + 135337776 T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8150190 1 - 8369578 T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798649 1 + 106955855 T i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123856954 1 + 133663169 T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128165149 1 + 137757926 T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10570255 1 - 16319837 T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192413 1 + 20526591 T i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165349 1 + 128539186 T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 475995 1 + 6255621 T i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4542008 1 - 8658521 T i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 389371 1 - 9212255 T i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2803581 1 + 4466143 T i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500488 1 + 5364348 T i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9419237 1 - 31815103 T i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4236514 1 + 7922563 T i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33106960 1 - 38964690 T i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 776255 1 - 1116856 T i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e calJac3.chr9 114742361 277 + 124281992 I a score=91524.000000 s hg38.chr12_KI270834v1_alt 437 6 + 119498 TTAGTT s panTro5.chr12 127286502 6 + 137163284 TTAGTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637537 6 + 135337776 TTAGTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8150191 6 - 8369578 TTAGTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798650 6 + 106955855 TTAGTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123856955 6 + 133663169 TTAGTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128165150 6 + 137757926 TTAGTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10570256 6 - 16319837 TTAGTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192414 6 + 20526591 TTAGTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165350 6 + 128539186 TTAGTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 475996 6 + 6255621 TTAGTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4542009 6 - 8658521 TTAGTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114742638 6 + 124281992 TTAGTT i calJac3.chr9 I 277 C 0 s saiBol1.JH378194 389372 6 - 9212255 TTAGTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2803582 6 + 4466143 TTAGTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500489 6 + 5364348 TTAGTT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9419238 6 - 31815103 TTAGTT i micMur3.chr21 C 0 I 2303 s otoGar3.GL873618 4236515 6 + 7922563 TTCTTT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33106961 6 - 38964690 TTAGTC i canFam3.chr26 C 0 I 54 s dasNov3.JH568189 776256 6 - 1116856 TTATTT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I a score=656298.000000 s hg38.chr12_KI270834v1_alt 443 71 + 119498 AAAATTGTTTCC-------------------CTCAGTACATTATCTTT---------------------------------------------------GGTCTGATGATGAAGCACA----------------------------CAATTTCAACAATGCCGCAGGGC s panTro5.chr12 127286508 71 + 137163284 AAAATTGTTTCC-------------------CTCAGTACATTATCTTT---------------------------------------------------GGTCTGATGATGAAGCACA----------------------------CAATTTCAACAATGCCACAGGGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637543 71 + 135337776 AAAATTGTTTCC-------------------CTCAGTACATTATCTTT---------------------------------------------------GGTCTGATGATGAAGCACA----------------------------CAATTTCAACAATGCCACAGGGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8150197 71 - 8369578 AAAATTGTTTCC-------------------CTCAGTACATTATCTTT---------------------------------------------------GGTCTGATGATGAAGCACA----------------------------CAATTTCAACAATGCCACAGGGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798656 71 + 106955855 AAAATTGTTTCC-------------------CTCAGTACATTATCTTT---------------------------------------------------GGTCTGATGATGAAGCACA----------------------------CAATTTCAACAATGCCGCAGGGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123856961 75 + 133663169 AAAATTGTTTCC-------------------CTCAGTACATTATCTTTGCTCA----------------------------------------------GGTCTGTTGATGAAGCACA-----------------------------GATTTCAACAATGCCGCAGGGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128165156 75 + 137757926 AAAATTGTTTCC-------------------CTCAGTACATTATCTTTGCTCA----------------------------------------------GGTCTGTTGATGAAGCACA-----------------------------GATTTCAACAATGCCGCAGGGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10570262 75 - 16319837 AAAATTGTTTCC-------------------CTCAGTACATTATCTTTGCTCA----------------------------------------------GGTCTGTTGATGAAGCACA-----------------------------GATTTCAACAATGCCGCAGGGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192420 75 + 20526591 AAAATTGTTTCC-------------------CTCAGTACATTATCTTTGCTCA----------------------------------------------GGTCTGTTGATGAAGCACA-----------------------------GATTTCAACAATGCCGCAGGGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165356 75 + 128539186 AAAATTGTTTCC-------------------CTCAGTACATTATCTTTGCTCA----------------------------------------------GGTCTGTTGATGAAGCACA-----------------------------GATTTCAATAATGCAGCAGGGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 476002 75 + 6255621 AAAATTGTTTCC-------------------CTCAGTACATTATCTTTGCTCA----------------------------------------------GGTCTGTTGATGAAGCACA-----------------------------GATTTCAACAATGCCGCAGGGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4542015 75 - 8658521 AAAATTGTTTCC-------------------CTCAGTACATTATCTTTGCTCA----------------------------------------------GGTCTGTTGATGAAGCACA-----------------------------GATTTCAGTAATGCCACAGGGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114742644 76 + 124281992 AAAGTTGTTTCC-------------------TTCAGGGCATTATCTTTGCTTA----------------------------------------------GGTCTGATGAAGAAGCACA----------------------------GGATTCCAGCAGTGCCACAGGGC i calJac3.chr9 C 0 I 719 s saiBol1.JH378194 389378 76 - 9212255 AGAATTGTTTCC-------------------TTCAGTGCATTATCTTTGCTGA----------------------------------------------GGGCTGATGAAGAAGCCCA----------------------------AGATTCCAGCAGTACCGCAGGGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2803588 76 + 4466143 AAAATTGTTTCC-------------------TTCAGTGCATTATCTTTGCTTA----------------------------------------------GGTCTGATGAAGAAGCGTA----------------------------AGATTCCAGCAGTGCCACAGGGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500495 76 + 5364348 AAAATTGTTTCC-------------------TTCAGTGCAATGTCTTTGCTTA----------------------------------------------GGTCTGATGAAGAAGCACA----------------------------AGATTCCAGCAGTGCCACAGGGC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4236521 76 + 7922563 TACAATATGTCC-------------------CTCAGTGCCTTATCTTTGCTTA----------------------------------------------GACCTGGTGCCGGGGAACA----------------------------AAGGTTCAGCAATGATGCTGCAC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33107021 166 - 38964690 GAAATTGTTTCCGTGTGAAGTTTGTTTGtttctttttagattttatttatttattcatgagagacagagagagagagagagagagagaggcagagacacaggcagaaggagaagcaggctccctgtggggaacctgatgtgggactcgatcccagga---ccccaggat i canFam3.chr26 I 54 C 0 s dasNov3.JH568189 776262 63 - 1116856 TAAAATATGCCT------------------------------ATCTTTGCTTA----------------------------------------------TATCC-ATAAAGAAGAACA-----------------------------AAGTTTTATATCAATGTAGGGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I a score=1688271.000000 s hg38.chr12_KI270834v1_alt 514 162 + 119498 TAT-ACAT---GGGCACGACACAG-TTCTATAATGTTG---------------TTTCTATGT-AAAGTGTCTGTAAAACTGTCAACCACA-GGATTC------------------TTTTAAAA--AAGAAAGATCCCAGCAGGTGCAAAGTGGGCGTTTGCAGTTGCTTTTCTCGAAG----------------------------------ATTTAAAAAACTATAGTAAGTGACCT s panTro5.chr12 127286579 161 + 137163284 TAT-ACAT---GGGCACGACACAG-TTCTATAATGTTG---------------TTTCTATGT-AAAGTGTCTATAAAACTGTCAACCACA-GGATTC------------------TTTTAAAA--AAGAAAGATCCCAGCAGGTGCAAAGTGG-CGTTTGCAGTTGCTTTTCTCGAAG----------------------------------ATTTAAAAAACTATAGTAAGTGACCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637614 161 + 135337776 TAT-ACAT---GGGCACGACACAG-TTCTATAATGTTG---------------TTTCTATGT-AAAGTGTCTATAAAACTGTCAACCACA-GGATTC------------------TTTTAAAA--AAGAAAGATCCCAGCAGGTGCAAAGTGG-CGTTTGCAGTTGCTTTTCTCGAAG----------------------------------ATTTAAAAAACTATAGTAAGTGACCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8150268 161 - 8369578 TAT-ACAT---GGGCACGACACAG-TTCTATAATGTTG---------------TTTCTATGT-AAAGTGTCTATAAAACTGTCAACCACA-GGATTC------------------TTTTAAAA--AAGAAAGATCCTAGCAGGTGCAAAGTGG-CGTTTGCAGTTGCTTTTCTCGAAG----------------------------------ATTTAAAAAACTATAGTAAGTGACCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798727 161 + 106955855 TAT-ACAT---GGGCATGACACAG-TTCTATAATGTTG---------------TTTCTATGT-AAAGTGTCTGTAAAACTGTCAACCACA-GGATTC------------------TTTTAAAA--AAGAACGATCCCAGCAGGTGCAAAGTGG-CATTTGCAGTTGCTTTTCTCGAAG----------------------------------ATTTAAAAAAATATAGTAAGTGGCCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123857036 161 + 133663169 TAT-ACAT---AGGCATGACACAG-TTCTATAATATTG---------------TTTCTATGT-AAAGTGTCTATAAAACTGTCAACCACA-GGATTC------------------TTTTAAAA--AAGAAACATCCCAGCAGGTGCAAAGTGG-CATTTGCAGTTGCTTTTCTTGAAG----------------------------------ATTTAAAAAAATATAGTAAGTGGCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128165231 161 + 137757926 TAT-ACAT---AGGCATGACACAG-TTCTATAATATTG---------------TTTCTATGT-AAAGTGTCTATAAAACTGTCAACCACA-GGATTC------------------TTTTAAAA--AAGAAACATCCCAGCAGGTGCAAAGTGG-CATTTGCAGTTGCTTTTCTTGAAG----------------------------------ATTTAAAAAAATATAGTAAGTGGCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10570337 161 - 16319837 TAT-ACAT---AGGCATGACACAG-TTCTATAATATTG---------------TTTCTATGT-AAAGTGTCTATAAAACTGTCAACCACA-GGATTC------------------TTTTAAAA--AAGAAACATCCCAGCAGGTGCAAAGTGG-CATTTGCAGTTGCTTTTCTTGAAG----------------------------------ATTTAAAAAAATATAGTAAGTGGCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192495 161 + 20526591 TAT-ACAT---AGGCATGACACAG-TTCTATAATATTG---------------TTTCTATGT-AAAGTGTCTATAAAACTGTCAACCACA-GGATTC------------------TTTTAAAA--AAGAAACATCCCAGCAGGTGCAAAGTGG-CATTTGCAGTTGCTTTTCTTGAAG----------------------------------ATTTAAAAAAATATAGTAAGTGGCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165431 161 + 128539186 TAT-ACAT---AGGCATGACACAG-TTCTATAATATTG---------------TTTCTATGT-AAAGTGTGTATAAAACTGTCAACCACA-GGATTC------------------TTTTAAAA--AAGAAACATCCCAGCAGGTGCAAAGTGG-CATTTGCAGTTGCTTTTCTTGAAG----------------------------------ATTTAAAAAAATATAGTAAGTGGCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 476077 161 + 6255621 TAT-ACAT---AGGCATGACACAG-TTCCATAATATTG---------------TTTCTATGT-AAAGTGTCTATAAAACTGTCAACCACA-GGATTC------------------TTTTAAAA--AAGAAACATCCCAGCAGGTGCAAAGTGG-CATTTGCAGTTGCTTTTCTTGAAG----------------------------------ATTTAAAAAAATATAATAAGTGGCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4542090 161 - 8658521 TAT-ACAT---AGGCATGACACAG-TTCTATAATGTTG---------------TTTCTATGT-AAAGTGTCTATAAAACTGTCAACCACA-GGATTC------------------TTTTAAAA--AAGAAACATCCCAGCAGGTGCAAAGTGG-CGTTTGCAGTTGCTTTTCTTGAAG----------------------------------ATTTAAAAAAATATAGTAAGTGGCCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114743439 157 + 124281992 TAC-ACAT---GGGCACAACACG--GTCTATAATGTTG---------------TTTCTATGT-AAAGTGTCTTTACGACTGTCAACCACA--GATTC------------------TTTCAAAACCAAGAA----GCCAACAGGTGTGAAGTGG-CATTTTCAGTTGCTTTTCTCGAAA----------------------------------GTTTAAAAAAATATAGTAAGTGGCCT i calJac3.chr9 I 719 C 0 s saiBol1.JH378194 389454 192 - 9212255 TGT-ATGT---AGGCACAACACAC-TTCTGTAATGTCG---------------TTTCTGTGT-AAAGTGTCTACACAACTGTCAACCACA--GATTC------------------TTTCAAAACCAAGAG----CCCAACAGATGTGAAGTGG-CATTTTCAGTTGCTTTTCTTGAAATTAAAAAAAATATATAGTAAATGGCCTGTAAAATTTTTTAAAAAATATCGTAAGTGGCCT i saiBol1.JH378194 C 0 I 41 s cebCap1.NW_016107484v1 2803664 158 + 4466143 TAT-ATGT---AGGCACAACACGG-TTCTGTAATGTTG---------------TTTCTATGT-AAAGTGTCTATACAACTGTCAACCACA--GAGTC------------------TTTCAAAACCAAGAA----CCCAACAGGTGTGAAGTGG-CATTTTCAGTTGCTTTTCTCGAAA----------------------------------ATTTAAAAAAATATAGTAAGTGGCCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500571 158 + 5364348 TAT-ACGT---AGGCACAACACGG-TTCTGTAATGTTG---------------TTTCTATGT-AAAGTGTCTATACAACTGTCAACCACA--GATTC------------------TTTCAAAACCAAGAA----CCCAACAGGTGTGAAGTGG-CATTTTCAGTTGCTTTTCTTGAAA----------------------------------GTTTAAAAAAGTATAGTAAGTGGCCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4236597 152 + 7922563 TAT-ATGTGTAATGCAAGCAACAG-TTCTATAATATTG---------------TTTCTATG--------------AGATTATCAACCACAAGGATTC------------------TTAAAAAACAAAAAAAATCCCTCACAGGTGTTAAGTGC-CGTTTGCCATTG-TTCATTTGAAG----------------------------------ATTGGAAAAGA-AAAGAAAAGGGCCT i otoGar3.GL873618 C 0 I 1 s canFam3.chr26 33107187 192 - 38964690 catgacct---gagccaaaggcagatgctcaaccactgagccacccagatgccccTCTGTGT-GAAGTTTCTATACAATTATCAACCACAAGGATTCTCCTGTTTTTTTTTTTTTTTTTAAAC--AA-----ATCCTGCCAGATGTAAACGGG-CATTTGTGGTTGCTTCATTCTAAT----------------------------------GTTTAAAATATTATAGCAGGGGATCT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 776325 157 - 1116856 TAG-AAAT---ATATAAGAAATAA-CTCTACAATATTG---------------TTTTTATGCAAAAGTTTCTGTAAAATTATCAACCACAAGGATTC------------------TCT-------AAGACAAACCCTCTCAGACTTAAAGTGG-TATTTTCAGTTGCTTCTTTTGGAG-----------------------------------TTAAAAAAAAATTAGCACAAGGTCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I a score=80666.000000 s hg38.chr12_KI270834v1_alt 676 12 + 119498 TGATcagcccca s panTro5.chr12 127286740 12 + 137163284 TGATcagcccca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637775 12 + 135337776 TGATcagcccca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8150429 11 - 8369578 TGATcag-ccca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798888 12 + 106955855 TGATcagcccca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123857197 12 + 133663169 CTATcagcctca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128165392 12 + 137757926 CTATcagcctca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10570498 12 - 16319837 CTATcagcctca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192656 12 + 20526591 CTATcagcccca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165592 12 + 128539186 CTATcagcccca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 476238 12 + 6255621 CTATcagcccca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4542251 12 - 8658521 CTATcagcccca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114743596 12 + 124281992 AGACcagcccta i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2803822 12 + 4466143 AGACcagccctc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500729 12 + 5364348 AGACcagccctg i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4236750 11 + 7922563 AGAGcagccca- i otoGar3.GL873618 I 1 C 0 s canFam3.chr26 33107379 12 - 38964690 AGGTcagtgcca i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 776482 12 - 1116856 AGATcaacacca i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e saiBol1.JH378194 389646 41 - 9212255 I a score=1260726.000000 s hg38.chr12_KI270834v1_alt 688 107 + 119498 tccagcagacatcaaacggaactcacatatgtaatttacag-t-tttttagctgctacagtaaaagagta----aaaacaggtgaaattaattttaatagtatattttaatta s panTro5.chr12 127286752 107 + 137163284 tccagcagacatcaaacggaactcacatatgtaatttacag-t-tttttagctgctacagtaaaagagta----aaaacgggtgaaattaattttaatagtatattttaatta i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637787 107 + 135337776 tccagcagacatcaaacggaactcacatatgtaatttacag-t-tttttagctgctacagtaaaagagta----aaaacgggtgaaattaattttaatagtatattttaatta i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8150440 106 - 8369578 tccagcagacatcaaaaggaactcacatacgtaatttacag-t-tttttagctgctacagtaaaagagt-----aaaacgggtgaaattaattttaatagtatattttaatta i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97798900 107 + 106955855 tccagcagacatcaaaagggactcacatatgtaatttacag-t-tttttagctgctacagtaaaatagta----aaaacaggtgaaattaattttaatagtacattttaatta i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123857209 107 + 133663169 tccagcagacatggaaagggactcacatatgtaatttacag-t-tttttagctgctacagtaaaagagta----aaaacaggtgaaattaattttaatagtatatttcaatta i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128165404 107 + 137757926 tccagcagacatggaaagggactcacatatgtaatttacag-t-tttttagctgctacagtaaaagagta----aaaacaggtgaaattaattttaatagtatatttcaatta i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10570510 107 - 16319837 tccagcagacatggaaagggactcacatatgtaatttacag-t-tttttagctgctacagtaaaagagta----aaaacaggtgaaattaattttaatagtatatttcaatta i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192668 107 + 20526591 tccagcagacatggaaagggactcacatatgtaatttacag-t-tttttagctgctacagtaaaagagta----aaaacaggtgaaattaattttaatagtatatttcaatta i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165604 107 + 128539186 tccagcagacatggaaagtgactcacatatgtaatttacag-t-tttttagctgctacagtaaaagagta----aaaacaggtaaaattaattttaatagtatatttcaatta i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 476250 107 + 6255621 tccagcagacatggaaagggactcacatatgtaatttacag-t-tttttagctgctacagtaaaagagta----aaaacaggtgaaattaattttaatagtatatttcaatta i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4542263 108 - 8658521 tccagcagacatggaaagggactcacatatgtaatttacagtt-tttttagctgctacagtaaaagagta----aaaacaggtgaaattaattttaatagtacatttcaatta i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114743608 110 + 124281992 tccagcagacattgaaagggactcacatatgtcatttacag-t-tttttagccactacagtaagagagtaaaagaaaacaggtgaaattaattttaagagtgtattt-aatta i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 389687 110 - 9212255 tccagcagacattgaaagggactcacatatgtaatttacag-t-tttttagccactacagtaaaagagtaaaagaaaagaggtgaaattaattttaatagtgtattt-aatta i saiBol1.JH378194 I 41 C 0 s cebCap1.NW_016107484v1 2803834 108 + 4466143 tccagcagacattgaaagggactcacatatgtaatttacag-t-tttttagccactacagtaaaagagtaaaagaaaacaggtgaaattaatttta--agtgtattt-aatta i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500741 110 + 5364348 tccagcagacatcgaaagggactcacatatgtaatttacag-g-tttttagccactacagtaaaagagtaaaagaaaacaggtgaaattaattttaatagtgtattt-aatta i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4236761 111 + 7922563 tctaacagagatatcatgagacgcaaatatgtaatttatag-t-tttctagcagctatgttaaaagcttaaaatgaagcagattgagttaattttaagaatctattttaatta i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33107391 104 - 38964690 tccaacagaagt---acatgacccagatatgtaatttaaaa-tgtttccattagctgttttgaaaaagt-----aaaacaggtaaaaataattttagtaatatattttattta i canFam3.chr26 C 0 I 114 s dasNov3.JH568189 776494 110 - 1116856 tccagtagaaatataatgcgatccacacctgcaatttcaaa-t-tttctagtagttacattaaaaaagtaaaaagaaacagatgaaattaaatttaatagt-tattttaatta i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I a score=558546.000000 s hg38.chr12_KI270834v1_alt 795 51 + 119498 actcaatatatcccaaac---attatttcaacatgtaatcaacatgaaacattt s panTro5.chr12 127286859 51 + 137163284 actcaatatatcccaaac---attatttcaacatgtaatcaacatgaaacattt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637894 51 + 135337776 actcaatatatcccaaac---attatttcaacatgtaatcaacatgaaacattt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8150546 51 - 8369578 actcaatatatcccaaac---attatttcaacatgtaatcaatatgaaacattt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97799007 51 + 106955855 actcaatatatcccaaac---attatttcaatatgtaatcaacatgaagcattt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123857316 51 + 133663169 actcaatatatcccaaac---attatttcaacatgtaatcaacatgaagcattt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128165511 51 + 137757926 actcaatatatcccaaac---attatttcaacatgtaatcaacatgaagcattt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10570617 51 - 16319837 actcaatatatcccaaac---attatttcaacatgtaatcaacatgaagcattt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192775 51 + 20526591 actcaatatatcccaaac---attatttcaacatgtaatcaacatgaagcattt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165711 51 + 128539186 actcaatatatcccaaac---attatttcaacatgtaatcaacatgaagcattt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 476357 51 + 6255621 actcaatatatcccaaac---attatttcaacatgtaatcaacatgaagcattt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4542371 51 - 8658521 actcaatatatcccaaac---attatttcaacatgtaatcaacatgaagcattt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114743718 51 + 124281992 actcagtatatcccaaac---attatttcaatatgtaatcaacataaagcattt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 389797 37 - 9212255 actcaatatatcccaaac---atta--------------caacataaagcattt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2803942 48 + 4466143 actca--atatcccaaac---attatttcaatatgtaatc-acataaagcattt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500851 51 + 5364348 actcaatatatcccaaac---atcctttcaatatgtaatcaacataaaacattg i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4236872 50 + 7922563 acccaatacatccaaaac---attatttcaccatataaccaatgtgcaa-attg i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 776604 54 - 1116856 accacatctatctacagctttatcatttcaacatgcaatcggtataaaaCATTT i dasNov3.JH568189 C 0 I 2286 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e canFam3.chr26 33107495 114 - 38964690 I a score=577313.000000 s hg38.chr12_KI270834v1_alt 846 55 + 119498 attcatgagatattttacattcttcttaaaaaatatgtcaaagtgcaatgtgtat s panTro5.chr12 127286910 55 + 137163284 attcatgagatattttacattcttcttaaaaaatatgtcaaagtgcaatgtgtat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125637945 55 + 135337776 attcatgagatattttacattcttcttaaaaaatatgtcaaagtgcaatgtgtat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8150597 55 - 8369578 attcatgagatattttacattcttcttaaaaaatatgtcaaagtgcaatgtgtat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97799058 55 + 106955855 attcatgagatattttacattcttcttaaaaaatatgtcaaagtgcaatgtgtgt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123857367 55 + 133663169 attcatgagatattttacattcttcttaaaaaatatgtcgaagcacaatgtgtat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128165562 55 + 137757926 attcatgagatattttacattcttcttaaaaaatatgtcgaagcacaatgtgtat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10570668 55 - 16319837 attcatgagatattttacattcttcttaaaaaatatgtcgaagcacaatgtgtat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192826 55 + 20526591 attcatgagatattttacattcttcttaaaaaatatgtcaaagcacaatgtgtat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165762 55 + 128539186 attcatgagatattttacattcttcttaaaaaatatgtcaaagtgcaatgtgtat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 476408 55 + 6255621 attcatgagatactttacattcttcttaaaaaatatgtcaaagcacaatgtgtgt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4542422 55 - 8658521 attcatgagatattttacattcttcttaaaaaatatgtcgaagtgcaatgtgtat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114743769 55 + 124281992 atttatgagatattttacatttttcttaaaaagtacatcaaagtatgatgtgtat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 389834 55 - 9212255 atttatgagatattttacattcttcttaaaaagtacgtcaaagtgcgatgtgtat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2803990 55 + 4466143 atttatgagatattttacattcttcttaaaaagttcgtcaaaatacgatgtgtat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500902 48 + 5364348 attcatgagatattttacattcttcttaaaaagtacg-------atgatgtgtat i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4236922 54 + 7922563 attcctgtgacattttacattcttcttaaaaaataggttg-agctcgatgcctgt i otoGar3.GL873618 C 0 I 213 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I a score=412985.000000 s hg38.chr12_KI270834v1_alt 901 41 + 119498 tttatatctatagcctatttcaacctgggcttgccccgttt s panTro5.chr12 127286965 41 + 137163284 tttatatctatagcctatttcaacctgggcttgccccgttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125638000 41 + 135337776 tttatatctatagcctatttcaacctgggcttgccccgttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8150652 41 - 8369578 tttatatctatagcctatttcaacctgggcttgcctcgttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97799113 41 + 106955855 tttacatctatagcctatgtcaacctgggcttgcctcgttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123857422 41 + 133663169 tttacacctatagcctatttcaacctgggcttgccccattt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128165617 41 + 137757926 tttacacctatagcctatttcaacctgggcttgccccattt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10570723 41 - 16319837 tttacacctatagcctatttcaacctgggcttgccccattt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192881 41 + 20526591 tttacacctatagcctatttcaacctgggcttgccccattt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165817 41 + 128539186 tttacacctatagcctatttcaacctgggcttgccccattt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 476463 41 + 6255621 tttacacctatagcctatttcaacctgggcttgccccattt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4542477 41 - 8658521 tttatacctatagcctatttcaacctgggcttgccccattt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114743824 41 + 124281992 tttatacctacagcccgtttcaacctggacttgccccattt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 389889 41 - 9212255 tttatacctatagcctgtttcaacctggacttgccccattt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2804045 41 + 4466143 tttctaccaatagcctatttcaacctggacttgccccattt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500950 41 + 5364348 tttatacctacagcctatttcagcccggacttgccccattt i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e otoGar3.GL873618 4236976 213 + 7922563 I a score=6223960.000000 s hg38.chr12_KI270834v1_alt 942 617 + 119498 caagtgctccatagacacgc-----------------------gtggcttg-----tggcc-----------------------------------------------------accatactgATGGGATAGCCAGC--------CCTGTGGGTGGGACAGAGGGG---------GCATGGGTCTGTGTTTATTTGGTGATGGCACCACACAGACACGAAT---TAGGAGTTACAGTCCTCATTTGTGAGTTATGCTTCTGCTC--GTGTTCCTCTATTCCTCGGTCATGTTTTCCAAAGTGTGGTCATCTAGTCATG--------Ccatgacatcaagtgacttcattttccctagtgagaaagtcatcccttctttggttcccttcctatccttgagttcacactgagaaa-----gtctctcgtaagtgctggcttgttttcaacacctg---tt-acatctgtctctccctctcaacaaggagcaggcagccctcaggcccTggtgacgtggagtcttagccc-tcttt-tcactg-tctgctggcttccctggagca------ctcacctttacctttgcaggcttcagtttcctcatctgtaaaactaggTAGAAGTAGGCA-----TTTTCT-AGCTAAAGTTCTCGGTTTTATAATCCCATAACCcagtgtttctc--aaactttggtcctgtctcatca-tttttgtcagatctgagtatcatctatgctgtcatggctttatatt s panTro5.chr12 127287006 617 + 137163284 cgagtgctccatagacacgc-----------------------gtggcttg-----tggcc-----------------------------------------------------accatactgATGGGATAGCCAGC--------CCTGTGGGTGGGACAGAGGGG---------GCATGGGTCTGTGTTTATTTGGTGATGGCACCACACAGACACGAAT---TAGGAGTTACAGTCCTCATTTGTGAGTTATGCTTCCGCTC--GTGTTCCTCTATTCCTCGGTCATGTTTTCCAAAGTGTGGTCATCTAGTCATG--------Ccatgacatcaagtgacttcattttccctagtgagaaagtcatcccttctttggttcccttcctatccttgagttcacactgagaaa-----gtctctcgtaagtgctggcttgttttcaacacctg---tt-acatctgtctctccctctcaacaaggagcaggcagccctcaggcccTggtgacgtggagtcttagccc-tcttt-tcactg-tctgctggcttccctggagca------ctcacctttacctttgcagacttcagtttcctcatctgtaaaactaggTAGAAGTAGGCA-----TTTTCT-AGCTAAAGTTCTCGGTTTTATAATCCCATAACCcagtgtttctc--aaactttggtcctgtctcatca-tttttgtcagatctgagtatcatctatgccgtcatggctttatatt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125638041 617 + 135337776 cgagtgctccatagacacgc-----------------------gtggcttg-----tggcc-----------------------------------------------------accatactgATGGGATAGCCAGC--------CCTGTGGGTGGGACAGAGGGG---------GCATGGGTCTGTGTTTATTTGGTGATGGCACCACACAGACACGAAT---TAGGAGTTACAGTCCTCATTTGTGAGTTATGCTTCCGCTC--GTGTTCCTCTATTCCTCGGTCATGTTTTCCAAAGTGTGGTCATCTAGTCATG--------Ccatgacatcaagtgacttcattttccctagtgagaaagtcatcccttctttggttcccttcctatccttgagttcacactgagaaa-----gtctctcgtaagtgctggcttgttttcaacacctg---tt-acatctgtctctccctctcaacaaggagcaggcagccctcaggcccTggtgacgtggagtcttagccc-tcttt-tcactg-tctgctggcttccctggagca------ctcacctttacctttgcagacttcagtttcctcatctgtaaaactaggTAGAAGTAGGCA-----TTTTCT-AGCTAAAGTTCTCGGTTTTATAATCCCATAACCcagtgtttctc--aaactttggtcctgtctcatca-tttttgtcagatctgagtatcatctatgccgtcatggctttatatt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8150693 620 - 8369578 ctagtgctccatagacacac-----------------------gtggcttg-----tggcc-----------------------------------------------------accatactgATGGGATAGCCAGC--------CCTGTGGGTGGGACAGAGGGG---------GCATGGGTCTGTGTTTATTTGGTGATGGCGCCACACAGACACGAATTAGTAGGAGTTACAGTCCTAATTTGTGA-TTATGCTTCCGCTCATGTGTTCCTCTATTCCTCAGTCATGTTTTCCAAAGTGTGGTCATCTAGTCATG--------Ccatgacatcaagtgacttcattttccctagtgagaaagtcatcccttctttggttcccttcctatccttgagttcacactgagaaa-----gtctctcgtaagtgctggcttgtcttcaacaccta---tt-acatctgtgtctccctctcaacaaggagtaggcagccctcaggcccTggtgacgtggagtcttagccc-tcttt-tcactg-tctgctggcttccctggagca------ctcacctttacctttgcagacttcagtttcctcatctgtaaaactaggtagaagtaggca-----ttttct-agctaaagttcccagttttatgatcccataaCCcagtgtttctc--aaactttggtcatgtctcatca-tttttgtcagatctgagtatcatctatgctgtcatggctttata-t i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97799154 622 + 106955855 cgagtgctccgtagccacgt-----------------------gtggcttg-----tggcc-----------------------------------------------------gccttactaatgggatagcCAGC--------CCTGTGGGTGGGACAGAGGGG---------GCATGGGTCTGTGTTTATTTGGTGATGGCGCCACACAGACACAAATTAGTAGGAGTTACAGTCCTAATTTTTGAGTTATGCTCCCGCTCCTGTGTTCCTCTATTCCTCTATCATGTTTTCCAAAGTGTGGTCATCTAGTCATG--------Ccacaacatcaaatgagttcattttccctagtgagaaagtcatcccttctttggttcccttcctatccttgaattcacatggagaaa-----gtctctcgtaagtgctagcttgtcttcaacacctg---tt-acacccgtctctccctctcaacaaggagcaggcagccctcaggtcccagTGATGTGGGgtctcagccc-tcttt-tcactg-tctgctgtcttccctggagca------ctcacttttacctttgaagacttcagtttcctcatctgtaaaactaggTAGAAGTAGGCA-----TTTTCT-AGCTAAAGTTTCTGGTTTTATGATCCCATAACCcagtgtttctc--aaactttggtcctttgtcatca-tttttgtcagatctgagtatcatctatgctgtcatggctttatatt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123857463 636 + 133663169 cgagtgctccgtagccacat-----------------------gtggcttg-----tggcc-----------------------------------------------------gccatactgATGGGATAGCCAGC--------CCTGTGGGTGGGACAGAGAAGGCT-CCTACGCATGGGTCTGTGTTTATTTGGTGATGGCGCCCCACAGCCATGAATTAGTAGGAGTTACAGTCCTAATTTGTGAGTTATGCTCCTGCTCATGTGTTTCTCTATTCCTCTGTCATGTTTTCCAGAGTGTGGTCATCTAGTCATG--------CCGTgacatcaaatgacttcattttccttagtgagaaagtcatcccttctttggttcccttcccatccttgagttcacattgagaaa-----gtctctcataagtgctggcttgtcttcaacacgtg---tt-acacctgtctctccctctcaacaaggagcaggcagccctcaggcccCAGTAACTTGGGGTCTCAGCCC-TCTTT-TCACTG-TCTGCTGGCTTCCCTGGAGCACTCACCCTCACctttacctttgcagacttcagtttcctcatctgtaaaactaggTAGAAGTAGGCA-----TTTTCT-AGCTAACGTTCCCAGTTTTATGATCCCATAACCcagtgtttctc--aaactttggtcctgtctcatca-tttttgtcagatctgagtatcatctatcctatcatggctttatatt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128165658 636 + 137757926 cgagtgctccgtagccacat-----------------------gtggcttg-----tggcc-----------------------------------------------------gccatactgATGGGATAGCCAGC--------CCTGTGGGTGGGACAGAGATGGCT-CCTACGCATGGGTCTGTGTTTATTTGGTGATGGCACCACACAGACATGAATTAGTAGGAGTTACAGTCCTAATTTGTGAGTTATGCTCCTGCTCATGTGTTTCTCTATTCCTCTGTCATGTTTTCCAGAGTGTGGTCATCTAGTCATG--------CCGTgacatcaaatgacttcattttccttagtgagaaagtcatcccttctttggttcccttcccatccttgagttcacattgagaaa-----gtctctcataagtgctggcttgtcttcaacacgtg---tt-acacctgtctctccctctcaacaaggagcaggcagccctcaggcccCAGTgacttggggtctcagccc-tcttt-tcactg-tctgctggcttccctggaacactcaccctcacctttacctttgcagacttcagtttcctcatctgtaaaactaggtagaagtaggca-----ttttct-agctaacgttcccagttttacgatcccataaCCcagtgtttctc--aaactttggtcctgtctcatca-tttttgtcagatctgagtatcatctatcctatcatggctttatatt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10570764 636 - 16319837 cgagtgctccgtagccacat-----------------------gtggcttg-----tggcc-----------------------------------------------------gccatactgATGGGATAGCCAGC--------CCTGTGGGTGGGACAGAGAAGGCT-CCTACGCGTGGGTCTGTGTTTATTTGGTGATGGCGCCACACAGACATGAATTAGTAGGAGTTACAGTCCTAATTTGTGAGTTATGCTCCTGCTCATGTGTTTCTCTATTCCTCTGTCATGTTTTCCAGAATGTGGTCATCTAGTCATG--------CCGTgacatcaaatgacttcattttccttagtgagaaagtcatcccttctttggttcccttcccatccttgagttcacattgagaaa-----gtctctcataagtgctggcttgtcttcaacacgtg---tt-acacctgtctctccctctcaacaaggagcaggcagccctcaggcccCAGTGACTTGGGGTCTCAGCCC-TCTTT-TCACTG-TCTGCTGGCTTCCCTGGAGCACTCACCCTCACctttacctttgcagacttcagtttcctcatctgtaaaactaggTAGAAGTAGGCA-----TTTTCT-AGCTAACGTTCCCAGTTTTATGATCCCATAACCcagtgtttctc--aaactttggtcctgtctcatca-tttttgtcagatctgagtatcatctatcctatcatggctttatatt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12192922 636 + 20526591 cgagtgctccgtagccacat-----------------------gtggcttg-----tggcc-----------------------------------------------------gccatactgATCGGATAGCCAGC--------CCTGTGGGTGGGACAGAGAAGGCT-CCTACGCATGGGTCTGTGTTTATTTGGTGATGGTGCCACACAGACATGAATTAGTAGGAGTTACAGTCCTAATTTGTGAGTTATGCTCCTGCTCATGTGTTTCTCTATTCCTCTGTCATGTTTTCCAGAGTGTGGTCATCTAGTCATG--------CCGTgacatcaaatgacttcattttccttagtgagaaagtcatcccttctttggttcccttcccatccttgagttcacactgagaaa-----gtctctcataagtgctggcttgtcttcaacatgtg---tt-acacttgtctctccctctcaacaaggagcaggcagccctcaggcccCAGTgacttggggtctcagctc-tcttt-tcactg-tctgctggcttccctggagcactcaccctcacctttacctttgcagacttcagtttcctcatctgtaaaactaggTAGAAGTAGGCA-----TTTTCT-AGCTAACGTTCCCAGTTTTATGATCCCATAACCcagtgtttctc--aagctttggtcctgtctcatca-tttttgtcagatctgagtatcatctatgctatcatggctttatatt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119165858 641 + 128539186 cgagtgctccgtagccacac-----------------------gtggcttg-----tggcc-----------------------------------------------------gccatactgATGGGATAGCCAGC--------CCTGTGGGTGGGACAGAGAAGGCT-CCTATGCATGGATGTGTGTTTATTTGGTGATGGTGCCACACAGACATGAATTAGTAGGAGTTACAGTCCTAATTTTTGAGTTATGCTCCTGCTCATGTGTTTCTCTATTCCTCTGTCATGTTTTCCAAAGTGTGGTCATCTAGTCATG--------CTGTgacatcaaatgacttcattttccttagtgagaaagtcatcccttctttggttcccttcccatctttgagttcacattgagaaa-----gtctctcataagtgctggcttgtcttcaacacatgttatt-acacctgtctctccctctcaacaaggagcaggcagccctcaggccccagtgccttgggGTCTCAGCCC-TCTTT-TCACTG-TCTGCTGGCTTCCCTGGAGCACTCACCCTCACctttacctttgcagacttcagttttctcatctgtaaaactaggtagaagtagaca-----ttttct-aGCTAATGTTCCTAGTTTTATGATCCCATAACCcagtgtttctcaaaaactttggtcctgtctcatca-tttttgtcagatctgagtatcatctatgctatcatggctttatatt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 476504 636 + 6255621 cgagtgctccgtagccacat-----------------------gtggcttg-----tggct-----------------------------------------------------gccatactgATGGGATAGCCAGC--------CCTGTGGGTGGGACAGAGAAGGCT-CCTATGCATGGGTCTGTGTTTATTTGGTGATGGTGCCACACAGACATGAATTAGTAGGAGTTACAGTCCTAATTTGTGAGTTATGCTCCTGCTCATGTGTTTCTCTATTCCTCTGTCATGTTTTCCAGAGTGTGGTCATCTAGTCATG--------CCGTgacatcaaatgacttcattttccttagtgagaaagtcatcccttctttggttcccttcccatccttgagttcacattgagaaa-----gtctctcataagtgctggcttgtcttcaacacgtg---tt-acacctgtctctccctctcaacaaggagcaggcagccctcaggcccCAGTgacttggggtctcagctc-tcttt-tcactg-tctgctggcttccctggagcactcaccctcacctttacctttgcagacttcagtttcctcatctgtaaaactaggTAGAAGTAGGCA-----TTTTCT-AGCTAACGTTCCCAGTTTTATGATCCCATAACCcagtgtttctc--aaactttggtcctgtctcatca-tttttgtcagatctgagtatcatctatgctatcatggctttatatt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4542518 640 - 8658521 cgagtgctccgtagccaccc-----------------------gtggcttg-----tggct-----------------------------------------------------gccatactgACGGGATAGCCAGC--------CCTGTGGGTGGGACAGAGAAGGCT-CCTATGCATGGGTCTGTGTTTATTTGGTGATGGCGCCACACAGACATGAATTAGTAGGAGTTACAGTCCTAATTTGTGAGTTATGCTCCTGCTCATGTGTTTCTCTATTCCTCTGTCATGTTTTCCAAAGTCTGGTCATCTAGTCATG--------CTGTgacatcaaatgacttcattttccttagtgagaaagtcatcccttctttggttcccttcccatccttgagttcacattgagaaa-----gtctctcataagtgctggcttgtcttcaacacgtgttatt-acacctgtctctccctctcaacaaggagcaggcagccctcaggcccCAGTGACTTGGGGTCTCAGCCT-TCTTT-TCACTG-TCTGCTGGCTTCCCTGGAGCACTCACCCTCACctttacctttgcagacttcagtttcctcatctgcaaaactaggtagaagtaggca-----ttttctaagctaatgttcccagttttatgatcccataaCCcagtgtttctc--aaactttggtcctgtctcatca-tttttgtcagatctgagtatcatctatgctatcatggctttacatt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114743865 620 + 124281992 ccagtgctcagtagccacgt-----------------------gtggcttg-----tggtt-----------------------------------------------------gccttactgATGGGGTAGCCAGC--------CCTCTGGGTGGGACAGAGAAGGCT-TCTGCATGTGGGTCTGGGGTCATTTGGTGGTGGTGCCACACAGACACGAAT---TAGGAGTTACCGTCCTGATTTGTGAGTTATGCTCCCGCTGATGTGTTCTGCTCTTCCTCTGTCATGTTTTTCCAAGTGC--TCATCtggtcatg--------ccatgacatcaaatgac--cattttccttagtgagaaagtcgtcccttctttggttcccttcccacccttgagttcacatcgagaaa-----gtctcttctaagtgctggcttgtcttcaacacctg---tt-gcacctgcctctccctctcaacaaggagcaggcagccctcagggtcagGTGGTGTGGGTCcccagccc-tcttc-tcactg-tctgccggcttacctggagca------ctcgcctgtacctttgcagccttcagttccctcatctgtaaaagtaggtagaaataggca-----tttttt-agctaaagttcccggttttataatcccataacccagtgtttc----AAACTCTGGTCACGTCTCATCA--TTTTATCGTATCTGAGTATCATCTATGCTGCCATGGCTTCGTatt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 389930 622 - 9212255 cgagtgctcggtagccatgc-----------------------atggcttg-----tggtt-----------------------------------------------------gccttactgATGGGAGAGCCAGC--------CCTGTGGGTGGGACAGAGAA-GCT-TCTACCTGTGGGTCTGTGGTCATTTGGTGATGGTGCCACGCAGACATGAAT---CAGGAGTTCCAGTCCTGATTTGTGAGTTATGCTCCTGCTGATGTGTTCTCCTCTTCCTCTGTCATGTTTTTCAAAGTGTGGTCATCtggtcatg--------ccatgacatcaaatgacttcattttacttagtgagaaagtcggcccttctttggttcccttcccatccttgagttcacatcgagaaa-----gtctcttctaagtgctggcttgtcttcaacacctg---tg-acgcctgtctctccctctcagcaaggagcaggcagcccgcagggtcagGTGCTGTGGGgccccagccc-tct---tcactg-tccgctggcttacctggagca------ctcacctttacctttgcagacttcagttccctcagctgtaagactaggTAGAAATCGGCA-----TTTTTT-AGCTAAGTTTCCCGGTTTTATAATCCCGTAACCcagcatttc----aaacttgggtcatgtctcacca-tttttgtcatatctgagtatcatctatgctgccatggctttgtatt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2804086 622 + 4466143 cgagtgctcagtagccacgc-----------------------atggctcg-----tggtt-----------------------------------------------------gccttactgATGGCATAGCCAGC--------CCTGTGGGTAGGACAGAGAAGGCT-TCTATGTGTGGGTCTGTGGTCATTTGGTGATGGTGCCACACAGACACGAAT---TAGGAGTTCCAGTCCTGATTTGTGAGTTACGCTCCTCCTGGCGTGTTCCGCTGTTCCTCTGTCACGTTTTTCAAAGTGTGGTCATCTGGTCATG--------CTGTgacatcaaatgacgtcattttccttagtgagaaagtcatcccttctttggttcccctcccacccttgagttcacattgagaaa-----gtctcttccaagtgctggcttgtcgtcaacacctg---tt-acacctgtctctccctctcggcaaggagcaggcagccctcagggtcagGTGCTGTGGCTCcccagccc-tccct-tcactg-tctgctggcctacctgaagca------ctcacctttacctttgcagacttcagttccctcatctgtaaaactaggtagaaataggca-----tttttt-agctaagcttcccagttttataatcccataaCCCAGCGTTTC----AAACTTTGGTCACGTGTCat----ttttgtcatatctgagtatcatctatgctgccatggctttgtatt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1500991 616 + 5364348 cgagtgctcagtagccacgc-----------------------atggcttg-----tggtt-----------------------------------------------------gccttactgATGGTATGGCCAGC--------CCTGTGGGTGGGACAGAGAG-GCT-TCTACGTGTGGGTCTGTGGTCATTTGGTGATGGTGCCACACAGACACGAAT---TAGGAGTTACAG-CCTGATTTGTGAGTTATGCTCCAGCTGATGCGTTCCGCTCTTCCTCT-----GTTTTTCAAAGTGTGGTCATCTGGTCATG--------Ccatgacatcaaatgacctcattttccttagtgagaaagtcgttccttctttggttcccttcccatccttgagttcacatggagaga-----gtctcttctaagtgccggattgtcttcaacacctg---tt-acacctgtctctccctctc--ccaaggacaggcagccctcagggtcggGCGGTGTGCGtccccagccc-tcttt-tcactg-tctgctggcttacctggagca------ctcacctttacctttgcagacttcagttccctcatctgtaaaactaggtagaaataggca-----tttttt-agctaaagtTCCCAGTTTTATAATCCCGTAACCcagtgtttc----aaactttggtcatgtctcatca-tttttgttatatctgagtatcatctatgctgccatggttttgtatt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4237189 700 + 7922563 caagggtgccatagtgagactctgtctcaaaaaaaaaaaaaaaatggcttgagatctggccagtgtttcacatctacatctttccctggacttgccacatcttgagtgttcacagccacatagggGACAATGCCAGCATCACTTGTCTGTGGGTGGGATGGGGAGAGATACCCAACTGTGGGTCTTTGATCATT--GTTGTGGCTCCACACAGGTGGAGAA---TAGTAGT-----------TTTGTGAGTTATAGTCTC-------TGTTCCTCTGTCTGTC---CTTGTTTCCCAGAGTGTGGTCACCTAGTCATGTACAATGACAATGACATCCAGTACCTTCCTGTTCCTtagtgagaaagtcattactttttcagttcctttctgatccttctgtt-acatcaacaaggaggtgttgctcttaagtgctcgcctgtttctagcacctg---ttaacacctgtctttccctttcaacaaggaacaggctgccttcaggcccagCTGACTTGGGATCTTAGCCCATCTTTGTTACTGTTCTGTTGA----CCTGGGGCC------CCCACTTTTACCTCTGCATACTTTA----------CTGTGAAACTACATAGA--TAAGCATTTATTTTTTT-AGCCAAAGGTCCCTGTTTTATGACCTCATAACCcagtgtttccc--aaactttggttatttctcaccattttttatcatatctaagcatcacgtatgctatcatGGCtttttttt i otoGar3.GL873618 I 213 I 256 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I a score=21159.000000 s hg38.chr12_KI270834v1_alt 1559 4 + 119498 tttc s panTro5.chr12 127287623 4 + 137163284 tttc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125638658 4 + 135337776 tttc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8151313 4 - 8369578 tttc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97799776 4 + 106955855 tttc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123858099 4 + 133663169 tttc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128166294 4 + 137757926 tttc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10571400 4 - 16319837 tttc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12193558 4 + 20526591 tttc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119166499 4 + 128539186 tttc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 477140 4 + 6255621 tttc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4543158 4 - 8658521 tttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114744485 1 + 124281992 t--- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 390552 4 - 9212255 tttc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2804708 4 + 4466143 tttc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1501607 1 + 5364348 t--- i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e otoGar3.GL873618 4237889 256 + 7922563 I a score=673190.000000 s hg38.chr12_KI270834v1_alt 1563 68 + 119498 ttcctatcag----tttcttttttatggaaatgaatgttattctaaaaataaacttccaccaccactgtaaa s panTro5.chr12 127287627 68 + 137163284 ttcctatcag----tttcttttttatggaaatgaatgttattctaaaaagaaacttccaccaccactgtaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125638662 68 + 135337776 ttcctatcag----tttcttttttatggaaatgaatgttattctaaaaagaaacttccaccaccactgtaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8151317 68 - 8369578 ttcctatcag----tttcttttttatggaaatgaatgttattctaaaaagaaacttacaccaccaatgtaaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97799780 68 + 106955855 ttcctatcag----tttcttttttatgaaaatgaatgttattctaaaaagaaacttacaccaccactgtaaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123858103 68 + 133663169 ttcctatcag----tttcttttttatggaaatgaatgttattctaaaaagaaacttacaccaccactgtaaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128166298 68 + 137757926 ttcctatcag----tttcttttttatggaaatgaatgttattctaaaaagaaacttacaccaccactgtaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10571404 68 - 16319837 ttcctatcag----tttcttttttatggaaatgaatgttattctaaaaagaaacttacaccaccactgtaaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12193562 68 + 20526591 ttcctatcag----tttcttttttatggaaatgaatgttattctaaaaagaaacttacaccaccactgtaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119166503 68 + 128539186 ttcctatcag----tttcttttttgtggaaatgaatgttattctaaaaagagacttacactgccactgtaaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 477144 68 + 6255621 ttcctatcag----tttcttttttatggaaatgaatgttattctaaaaagaaacttacaccaccactgtaaa i manLeu1.NW_012103587v1 C 0 I 2710 s colAng1.NW_012116043v1 4543162 68 - 8658521 ttcctatcag----tttcttttttatggaaatgaatgttattctaaaaagaaacttataccaccactgtaaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114744486 32 + 124281992 ----------------------------------------ttctaaaaagaaactgacaccaccactgtaaa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 390556 72 - 9212255 tttctatcagtctgtttcttttttacggaaatgaatgttattctaaatagaaactgacaccaccactgtaaa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2804712 72 + 4466143 tttctatcagtctatttcttttttacagaaatgaatattattctaaaaagaaactgacaccaccactgtaaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1501608 71 + 5364348 -ttctatcagtctatttcttttttacagaaatgaatgttattctaaaaagaaaccgacaccaccactgtaaa i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4238145 69 + 7922563 TTTCTATCAGTGTATTTcttttttacgtaaatgaatg-cattttaaaaagaaac--ataccaccactgtgaa i otoGar3.GL873618 I 256 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I a score=425526.000000 s hg38.chr12_KI270834v1_alt 1631 41 + 119498 gagaaaaccaaaagctcttgccagaaatagaaagtaattat s panTro5.chr12 127287695 41 + 137163284 gagaaaaccaaaagctcttgccagaaatagaaagtaattat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125638730 41 + 135337776 gagaaaaccaaaagctcttgccagaaatagaaagtaattat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8151385 41 - 8369578 gagaaaaccaaaagctcttgccagaaatagaaagtaattat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97799848 41 + 106955855 gagaaaaccaaaagcttttgccagaaatagaacgtaattat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123858171 41 + 133663169 gagaaaaccaaaaactcttgccagaaatagaaagtaattat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128166366 41 + 137757926 gagaaaaccaaaaactcttgccagaaatagaaagtaattat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10571472 41 - 16319837 gagaaaaccaaaaactcttgccagaaatagaaagtaattat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12193630 41 + 20526591 gagaaaaccaaaaactcttgccagaaatagaaagtaattat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119166571 41 + 128539186 gagaaaaccaaaaactcttgccagaaatagaaagtaattat i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4543230 41 - 8658521 gagaaaaccaaaaactcttgccagaaatagaaagtaattat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114744518 41 + 124281992 gagaaaacaaaaagctcttgccagaaatggaaagtaattat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 390628 41 - 9212255 gagaaaaccaaaagctcttgccagaaatggaaagtaattat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2804784 41 + 4466143 gagaaaatcaaaagctcttgccagaaatggaaagtagttat i cebCap1.NW_016107484v1 C 0 I 25 s aotNan1.NW_018491581v1 1501679 41 + 5364348 gagaaaaccaaaaactcttgccagaaatggaaagtaattat i aotNan1.NW_018491581v1 C 0 I 20 s otoGar3.GL873618 4238214 41 + 7922563 tggagaaccaaaagctcttgccagaaatagaaagtaatgat i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e manLeu1.NW_012103587v1 477212 2710 + 6255621 I a score=-45382.000000 s hg38.chr12_KI270834v1_alt 1672 8 + 119498 ta--------------------------------aaaaaa s panTro5.chr12 127287736 8 + 137163284 ta--------------------------------aaaaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125638771 8 + 135337776 ta--------------------------------aaaaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8151426 8 - 8369578 aa--------------------------------aaaaaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97799889 8 + 106955855 aT--------------------------------ATGAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123858212 18 + 133663169 at--ttgt--------------------aattatatatat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128166407 18 + 137757926 at--ttgt--------------------aattatatatat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10571513 18 - 16319837 at--ttgt--------------------aattatatatat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12193671 18 + 20526591 at--atat--------------------aattatatatat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119166612 20 + 128539186 atacatat--------------------aattatatatat i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4543271 18 - 8658521 at--atgt--------------------aattgtatatat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114744559 13 + 124281992 ----aTAT-----------------------CACACACAC i calJac3.chr9 C 0 I 4 s saiBol1.JH378194 390669 36 - 9212255 ----aTGTATGTacacacacacacacacacacacacacac i saiBol1.JH378194 C 0 I 4 s otoGar3.GL873618 4238255 8 + 7922563 --------------------------------aaaaatag i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e aotNan1.NW_018491581v1 1501720 20 + 5364348 I e cebCap1.NW_016107484v1 2804825 25 + 4466143 I e manLeu1.NW_012103587v1 477212 2710 + 6255621 I a score=4343.000000 s hg38.chr12_KI270834v1_alt 1680 7 + 119498 aaaaaac---------- s panTro5.chr12 127287744 7 + 137163284 aaaaaga---------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125638779 5 + 135337776 aaaga------------ i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8151434 7 - 8369578 aaaaaac---------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97799897 6 + 106955855 AAAAA-C---------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123858230 7 + 133663169 ataaaac---------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128166425 7 + 137757926 ataaaac---------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10571531 7 - 16319837 ataaaac---------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12193689 7 + 20526591 ataaaac---------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119166632 7 + 128539186 ataaaac---------- i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4543289 7 - 8658521 ataaaac---------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114744576 5 + 124281992 ATAAA------------ i calJac3.chr9 I 4 C 0 s saiBol1.JH378194 390709 5 - 9212255 acaAA------------ i saiBol1.JH378194 I 4 C 0 s aotNan1.NW_018491581v1 1501740 5 + 5364348 ATAAA------------ i aotNan1.NW_018491581v1 I 20 C 0 s otoGar3.GL873618 4238263 17 + 7922563 aaaaattttaaaagttt i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e cebCap1.NW_016107484v1 2804825 25 + 4466143 I e manLeu1.NW_012103587v1 477212 2710 + 6255621 I a score=526367.000000 s hg38.chr12_KI270834v1_alt 1687 64 + 119498 tagctcaaaacagtcgcctgtctctgagccagagaccttcgctctaagaaaggtgaatgaccct s panTro5.chr12 127287751 64 + 137163284 tagctcaaaacagttgcctgtctctgagccagagaccttcgctctaagaaaagtgaatgaccct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125638784 64 + 135337776 tagctcaaaacagttgcctgtctctgagccagagaccttcgctctaagaaaagtgaatgaccct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8151441 64 - 8369578 tagctcaaaacagttgcctgtctctgagccagaggcctttgctctaagaaaggtgaatgaccct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97799903 64 + 106955855 TAGCTCAAAACAGTCTCTTGTctctgagccagaggccttcgctctaagaaaggtgaatgaccct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123858237 64 + 133663169 tagctcaaaacagttgcctgtctctgagccagaggcctttgctctaaggaaagtgaatgaccct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128166432 64 + 137757926 tagctcaaaacagttgcctgtctctgagccagaggccttcgctctaaggaaagtgaatgaccct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10571538 64 - 16319837 tagctcaaaacagttgcctgtctctgagccagaggccttcgctctaaggaaagtgaatgaccct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12193696 64 + 20526591 tagctcaaaacagttgcctgtctctgagccagaggccttcgctctaaggaaagtgaatgaccct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119166639 64 + 128539186 tagctcaaaacagttgcttgtctctgagccagaggccttcgctctaaggaaagtaaatgaccct i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4543296 64 - 8658521 tagctcaaaacagttgcctgtctctgagccagaggccttcgctctaaggaaagtgaatgaccct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114744581 62 + 124281992 GAGCTAAAAACAG--GGCTGTCACCGAACCAGAGGTCTTTGCTCTAAGAAAGGTGAATGACCTT i calJac3.chr9 C 0 I 24 s saiBol1.JH378194 390714 50 - 9212255 GAGCTAAAAACAGTCGGCTGTTTCTGA--------------CCGTGGGGAAGGTCATTCACCTT i saiBol1.JH378194 C 0 I 5 s cebCap1.NW_016107484v1 2804850 64 + 4466143 gagctaaaaacagtcagctgtctctgagccagaggcctttgctctAAGAAAGGTGAATGACGGT i cebCap1.NW_016107484v1 I 25 C 0 s aotNan1.NW_018491581v1 1501745 64 + 5364348 GAGCTAAAAACAGTCGGCTGTCTCTGAGCCAGAGGCCTTTGCTCTAAGAAAGGTGAATGACTGT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4238280 64 + 7922563 tagctcagagtggatgctggtctgtgagctggaggcctgccctctgagaaatgcagatagcagt i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e manLeu1.NW_012103587v1 477212 2710 + 6255621 I a score=61128.000000 s hg38.chr12_KI270834v1_alt 1751 8 + 119498 ggggaggg s panTro5.chr12 127287815 8 + 137163284 ggggaggg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125638848 8 + 135337776 ggggaggg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8151505 8 - 8369578 ggagaggg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97799967 8 + 106955855 ggggaggg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123858301 8 + 133663169 ggggaggg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128166496 8 + 137757926 ggggaggg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10571602 8 - 16319837 ggggaggg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12193760 8 + 20526591 ggggaggg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119166703 8 + 128539186 ggggaggg i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4543360 8 - 8658521 ggggaggg i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 390769 7 - 9212255 -GAGCAAA i saiBol1.JH378194 I 5 I 1 s cebCap1.NW_016107484v1 2804914 8 + 4466143 GGAGAAGG i cebCap1.NW_016107484v1 C 0 I 29 s aotNan1.NW_018491581v1 1501809 8 + 5364348 GGGGAAGG i aotNan1.NW_018491581v1 C 0 I 29 s otoGar3.GL873618 4238344 8 + 7922563 ggagaggc i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e calJac3.chr9 114744643 24 + 124281992 I e manLeu1.NW_012103587v1 477212 2710 + 6255621 I a score=13043.000000 s hg38.chr12_KI270834v1_alt 1759 3 + 119498 act s panTro5.chr12 127287823 3 + 137163284 act i panTro5.chr12 C 0 C 0 s panPan2.chr12 125638856 3 + 135337776 act i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8151513 3 - 8369578 act i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97799975 3 + 106955855 gct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123858309 3 + 133663169 gct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128166504 3 + 137757926 gct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10571610 3 - 16319837 gct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12193768 3 + 20526591 gct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119166711 3 + 128539186 gct i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4543368 3 - 8658521 gct i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 390777 3 - 9212255 AAt i saiBol1.JH378194 I 1 C 0 s otoGar3.GL873618 4238352 3 + 7922563 att i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e aotNan1.NW_018491581v1 1501817 29 + 5364348 I e cebCap1.NW_016107484v1 2804922 29 + 4466143 I e calJac3.chr9 114744643 24 + 124281992 I e manLeu1.NW_012103587v1 477212 2710 + 6255621 I a score=57270.000000 s hg38.chr12_KI270834v1_alt 1762 11 + 119498 gaggacacagc s panTro5.chr12 127287826 11 + 137163284 gaggacacagc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125638859 11 + 135337776 gaggacacagc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8151516 11 - 8369578 gaggacatagc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97799978 11 + 106955855 aaggacacagt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123858312 11 + 133663169 gaggacacagt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128166507 11 + 137757926 gaggacacagt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10571613 11 - 16319837 gaggacacagt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12193771 11 + 20526591 gaggacacagt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119166714 11 + 128539186 gaggacacagc i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4543371 11 - 8658521 gaggacacagt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114744667 11 + 124281992 GAGCAAAAAGT i calJac3.chr9 I 24 C 0 s otoGar3.GL873618 4238355 11 + 7922563 aaagtcagggc i otoGar3.GL873618 C 0 I 129 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e aotNan1.NW_018491581v1 1501817 29 + 5364348 I e cebCap1.NW_016107484v1 2804922 29 + 4466143 I e saiBol1.JH378194 390780 0 - 9212255 C e manLeu1.NW_012103587v1 477212 2710 + 6255621 I a score=7622.000000 s hg38.chr12_KI270834v1_alt 1773 2 + 119498 gt s panTro5.chr12 127287837 2 + 137163284 gt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125638870 2 + 135337776 gt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8151527 2 - 8369578 gt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97799989 2 + 106955855 gt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123858323 2 + 133663169 gt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128166518 2 + 137757926 gt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10571624 2 - 16319837 gt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12193782 2 + 20526591 gt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119166725 2 + 128539186 gt i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4543382 2 - 8658521 gt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114744678 2 + 124281992 TA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 390780 2 - 9212255 ga i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e otoGar3.GL873618 4238366 129 + 7922563 I e aotNan1.NW_018491581v1 1501817 29 + 5364348 I e cebCap1.NW_016107484v1 2804922 29 + 4466143 I e manLeu1.NW_012103587v1 477212 2710 + 6255621 I a score=720398.000000 s hg38.chr12_KI270834v1_alt 1775 84 + 119498 aagaattaaagaaagaggaaagaaacacaaaaggtggcttgccagtcaaaacaggtttattttagagaaaacaaacctgagagg s panTro5.chr12 127287839 84 + 137163284 aaaaattaaagaaagaggaaagaaacacaaaaggtggcttgccagtcaaaacaggtttattttagagaaaacaaacctgagagg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125638872 84 + 135337776 aaaaattaaagaaagaggaaagaaacacaaaaggtggcttgccagtcaaaacaggtttattttagagaaaacaaacctgagagg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8151529 84 - 8369578 aagaagtaaagaaagaggaaagaaacacaaaaggtggcttgccagtcaaaacaggtttattttagagaaaacaaacctgggagg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97799991 84 + 106955855 aagaattaaagaaagaggaaagaaacacgaaaggtggcttgccaatcaaaacaggtttattttagagaaaacaaacctgagagg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123858325 84 + 133663169 aagaattaaagaaagaggaaagaaacacgaaaggtggctcgccagtcaaaacaggtttattttagagaaaacaaacctgagagg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128166520 84 + 137757926 aagaattaaagaaagaggaaagaaacacgaaaggtggctcgccagtcaaaacaggtttattttagagaaaacaaacctgagagg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10571626 84 - 16319837 aagaattaaagaaagaggaaagaaacacgaaaggtggctcgccagtcaaaacaggtttattttagagaaaacaaacctgagagg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12193784 84 + 20526591 aagaattaaagaaagaggaaagaaacacgaaaggtggctcgccagtcaaaacaggtttattttagagaaaacaaacctgagagg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119166727 84 + 128539186 aagaattaaagaaagaagaaagaaacacgaaaggtggctcgccagtcgaaacaggtttattttagagaaaacaaacctgagagg i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4543384 84 - 8658521 aagaattaaagaaagaggaaagaaacacgaaaggtggctcgccagtcaaaacaggtttattttagagaaaacaaacctgagagg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114744680 71 + 124281992 aagaattaaagaaagagg-aagaaatatgaagggtggctcagcaatcaagacaggtttattttagagaaaac------------ i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 390782 84 - 9212255 aagaactaaagaaagaggaaagaaatctgaaaggtggctcgccaatcaaaacaggtttattttagagaaaacaaacgttgagag i saiBol1.JH378194 C 0 I 16 s cebCap1.NW_016107484v1 2804951 84 + 4466143 aagaattaaagaaagaggaaagaaatatgaaaggtggctcgccagtcacaacaggtttattttagagaaaacagacgtgagagg i cebCap1.NW_016107484v1 I 29 I 15 s aotNan1.NW_018491581v1 1501846 84 + 5364348 aagaattaaagaaagaggaaagaaatatgaaaggtggctcgccaatcaagacaggtttgttttagagaaaacaaacatgagagg i aotNan1.NW_018491581v1 I 29 I 15 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e otoGar3.GL873618 4238366 129 + 7922563 I e manLeu1.NW_012103587v1 477212 2710 + 6255621 I a score=189920.000000 s hg38.chr12_KI270834v1_alt 1859 37 + 119498 ggattctggccaagttaggtcagagccacactctctt s panTro5.chr12 127287923 37 + 137163284 ggattctggccaagttaggtcagagccacactctctt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125638956 37 + 135337776 ggattctggccaagttaggtcagagccacactctctt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8151613 37 - 8369578 ggattctggccaagttaggtcagagccacactctctt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97800075 37 + 106955855 ggattctggccaagttaggtcagagccacactctctt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123858409 37 + 133663169 ggattctggccaagttaggtcagagccacactctctt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128166604 37 + 137757926 ggattctggccaagttaggtcagagccacactctctt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10571710 37 - 16319837 ggattctggccaagttaggtcagagccacactctctt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12193868 37 + 20526591 ggattccggccaagttaggtcagagccacactctctt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119166811 37 + 128539186 ggattctggccaagttaggtcagagccacactctctt i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4543468 37 - 8658521 ggattctggcaaaattaggtcagagccacactctctt i colAng1.NW_012116043v1 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e otoGar3.GL873618 4238366 129 + 7922563 I e aotNan1.NW_018491581v1 1501930 15 + 5364348 I e cebCap1.NW_016107484v1 2805035 15 + 4466143 I e saiBol1.JH378194 390866 16 - 9212255 I e calJac3.chr9 114744751 0 + 124281992 C e manLeu1.NW_012103587v1 477212 2710 + 6255621 I a score=1448521.000000 s hg38.chr12_KI270834v1_alt 1896 180 + 119498 agagactaagagtttttaaggatttagg--gtgggagagcttatctgaggcttggactgcttctgtgtctctctgttgtgcttatctgggagggagagttgtgtgtctattcccattcatttttctgcagcagcaggcatactcgccgagtctgcttttagctcccctatcttagtgcacct s panTro5.chr12 127287960 180 + 137163284 agagactaagagtttttaaggatttagg--gtgggagagtttatccgaggcttggactgcttctgtgtctctctgttgtgcttatctgggagggagagttgtgtgtctattcccattcatttttctgcagcagcaggcatactcgccgagtctgcttttagctcccctatcttagtgcacct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125638993 180 + 135337776 agagactaagagtttttaaggatttagg--gtgggagagtttatccgaggcttggactgcttctgtgtctctctgttgtgcttatctgggagggagagttgtgtgtctattcccattcatttttctgcagcagcaggcatactcgccgagtctgcttttagctcccctatcttagtgcacct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8151650 180 - 8369578 agagactaagagtttttaaggatttagg--gtgggagagtttatccgaggcttggactgcttctgtgtcactctgttgtgcttatctgggagagagagttgtgtgtctgttcccattcatttttctgcagcagcaggcatactctccgagtctgcttttagctcccctatcttagtgcacct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97800112 180 + 106955855 atagactaagagtttttaaggatttagg--gtgggagagtttatccgaggcttggactgcttctgtgtctctttgttgtgcttatctgggagggagagttgtgtgtctattcccatgcatttttctgcagctgcaggcatacccgccaagtctgcttttagctcccctatcttagtgcacct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123858446 180 + 133663169 acagactaagagtttttaaggatttagg--gtaggagagtttatcagaggtttggactgcttttttgtctctttgttgtgcttatctgagagggagagttgtgtatctattcccatgcatttttctgcagctgcaggcatacccgccgagtctgcttttagctcccctatcttagtgcacct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128166641 180 + 137757926 acagactaagagtttttaaggatttagg--gtaggagagtttatcagaggtttggactgcttttttgtctctttgttgtgcttatctgagagggagagttgtgtatctattcccatgcatttttctgcagctgcaggcatacccgccgagtctgcttttagctcccctatcttagtgcacct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10571747 180 - 16319837 acagactaagagtttttaaggatttagg--gtaggagagtttatcagaggtttggactgcttttttgtctctttgttgtgcttatctgagagggagagttgtgtatctattcccatgcatttttctgcagctgcaggcatacccgccgagtctgcttttagctcccctatcttagtgcacct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12193905 180 + 20526591 acagactaagagtttttaaggatttagg--gtaggagagtttatcagaggtttggactgcttttttgtctctttgttgtgcttatctgggagtgagagttgtgtatctattcccatgcatttttctgcagctgcaggcatacccgccgagtctgcttttagctcccctatcttagtgcacct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119166848 180 + 128539186 acagactaagagtttttaaggatttagg--gtaggagagtttatcagaggtttggactgcttctgtgtctctttgttgtgcttatctgggagggagagttgtgtatctattcccatgcatttttctgcagctgcaggcacacctgccaagtctgcttttagttcccctatcttagtgcatct i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4543505 180 - 8658521 acagactgagagtttttaaggatttagg--gtaggagagtttatcagaggtttggactgcttctgtgtctctttgttgtgcttatctgggagggagagttgtgtatctattcccacgcatttttctgcagctgcaggcatacccaccgagtctgcttttagctcccctatcttagtgcacct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114744751 178 + 124281992 --agactaagagtttttaaggattcaggctgt--gagagtttatcaaaggcttggactgcttctgtgtctctgtgtcgtgctcatctgggagggagagttgtacgtctgctcccacgcagctttctgcagctgccggcatacctgaccagtctgctctgagcttcgctttcttagtgcactg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 390882 176 - 9212255 acagactaagagtttttaaggattcagg--gt--gtgtgtttatcaaaggcttggactgctgctgagtctctttgttgtgcttatccgggagggagagttgg--gtctcttcccacacagcgttctgcagctgcaggcacacccgatcagtctgcttttagcttccctatcttagcgcacct i saiBol1.JH378194 I 16 C 0 s cebCap1.NW_016107484v1 2805050 176 + 4466143 acaggctaagagtttttaaggattcagg--gt--gtgtgtctatcaaaggcttggactgctgctgtgcctctttgctgtgcgtatctaggagggagagatgtgcgtctgttccca--cagcgttctgcagctgcaggcatgcccgaccagtctgcttttagcttccctatcttagcgcacct i cebCap1.NW_016107484v1 I 15 C 0 s aotNan1.NW_018491581v1 1501945 174 + 5364348 acagacgaagagtttttaaggattcagg--gt--gtgtgtttatcaaaggccgggactgcttctgtgtgtctctgttgtgcttatctgggagggagagtt----gtctgttcccacacagctttctgcagctgcagccatacccgaccagtctgcttttagcttccctatcttagtgcacct i aotNan1.NW_018491581v1 I 15 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e otoGar3.GL873618 4238366 129 + 7922563 I e manLeu1.NW_012103587v1 477212 2710 + 6255621 I a score=4447064.000000 s hg38.chr12_KI270834v1_alt 2076 479 + 119498 gaagggaaaggaatgttcttattaaggtccactgttttactgggacccattgtataagggtgaagtttggcagttacccaagaga----cttcctcctctcctccctctgtgcctgagctgtcttgtctatgttttcctgtctgctctttctggtggcttgtagttagaagataagtgatttccttaaaatgcatgggctggaaa-gggagctggaccttaaagtggtggtgtttgtccaagatgaggt-tgctcctgctctgtcacacagaagcacaaagaggagactttcccttcgatgtaatttactgtaattgaaaggactgggcgggaactggagagggaatcactctctcccagtgactcaGGGCTGAGTTATGTTGAGTGTGGACCCTCTAATCCACCACCAGGGTTAtgtcacaggctggccccaggtccgctctgcccacatgcagtccatcaatcgccgtgacatgggttttgcg s panTro5.chr12 127288140 479 + 137163284 gaagggaaaggaatgttcttattaaggtccactgttttactgggacccattgtataagggtgaagtttggcagttacccaagaga----cttcctcctctcctccctctgtgcctgagctgtcttgtctatgttttcctgtctgctctttctggtggcttgtagttagaagataagtgatttccttaaaatgcatgggctggaaa-gggagctggaccttaaagtggcggtgtttgtccaagatgaggt-tgctcctgctctgtcacacagaagcacaaagaggagactttcccttcgatgtaatttactgtaattgaaaggactgggcgggaactggagagggaatcactctctcctagtgactcaGGGCTGAGTTATGTTGAGTGTGGACCCTCTAATCCACCACCAGGGTTAtgtcacaggctggccccaggtccgctctgcccacatgcagtccatcaatcgccgtgacatgggttttgtg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125639173 479 + 135337776 gaagggaaaggaatgttcttattaaggtccactgttttactgggacccattgtataagggtgaagtttggcagttacccaagaga----cttcctcctctcctccctctgtgcctgagctgtcttgtctatgttttcctgtctgctctttctggtggcttgtagttagaagataagtgatttccttaaaatgcatgggctggaaa-gggagctggaccttaaagtggcggtgtttgtccaagatgaggt-tgctcctgctctgtcacacagaagcacaaagaggagactttcccttcgatgtaatttactgtaattgaaaggactgggcgggaactggagagggaatcactctctcctagtgactcaGGGCTGAGTTATGTTGAGTGTGGACCCTCTAATCCACCACCAGGGTTAtgtcacaggctggccccaggtccgctctgcccacatgcagtccatcaatcgccgtgacatgggttttgtg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8151830 479 - 8369578 gaagggaaaggaatgttcttattaaggtccactgttttactgggacccattgtgtaagggtgaagtttggcagttacccaagaga----cttcctcctctcctccctctgtgcctgagctgtcttgtctgtgttttcctgtctgctctttctggtggcttgtagttagaagagaaatgatttccttaaaatgcatgggctggaaa-gggagctggaccttaaagtggcagtgtttgtccaagatgaggt-tgctcctgctctgtcacacagaagcacaaagaggagactttcccttcgatgtaatttactgtaattgaaaggactgggcgggaactggagagggaatcactctctcccagtgactcagggctgtgtcatgttgagtgtggaccctctaaTCCACCACCAGGGTTAtgtcacaggctggccccaggtccgctctgcccacatgcagtccatcaatcgccgtgacatgggttttgtg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97800292 479 + 106955855 gaagggaaatgactgtgcttattaaggtccactgttttactggggcccattgtatgagggtgaagtttggcagttacccaagaga----cttcctcttctcctccctctgtgcctgagctgtcttgtctatgttttcctgtctgctctttctggtggcttgtagttagaagagaaattatttccttaaaatgcatgggctggaaa-gggagctggaccttaaagtggcggtgtttgtccaagatgaggg-tgctcctgctctgtcacacagaagcacaaagaggagactttcccttcgatgtaatttactgtaattgaaaggactgggcgggaactggagagggaatcactctctccgagtgactcagggctgtgtcatgttgagtgtggaccctctaaCCGACCACCAGGGTTAtgtcacaggctggccccaggtccgctctgcccacatgcagtccatcaatcgctgtgacatgggttttgtg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123858626 480 + 133663169 gaagggaaagaaatgtgcttattaaggcccactgttttactggggcccattgtatgagggtgaagtttggcagttacccaagaga----cttccttctctcctccctctgtgcccgagctgttttgtctgtgtgttcctgtctgctctttctggcagcctgtagttagaagagaaatgatttccttgaaatgcatgggctagaaaggggagctggaccttaaagtgacagtgtttgtccaagatgaggg-tgctcctgctctgtcacacagaagcacaaagaggagactttcccttcgatgtaatttactataattgaaaggactgggtgggaactggagagggaatcactctctcccagtgactcagggctatgttgtgttgagtgtggaccctctaaCCCACCACCAGGGTTAtgtcacaggctggccccaggtccgctctgcccacatgcagtccatcaatcgccgtgacatgggttttgca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128166821 480 + 137757926 gaagggaaaggaatgtgcttattaaggcccactgttttactggggcccattgtatgagggtgaagtttggcagttacccaagaga----cttccttctctcctccctctgtgcccgagctgttttgtctgtgtgttcctgtctgctctttctggcagcctgtagttagaagagaaatgatttccttgaaatgcatgggctagaaaggggagctggaccttaaagtgacagtgtttgtccaagatgaggg-tgctcctgctctgtcacacagaagcacaaagaggagactttcccttcgatgtaatttactataattgaaaggactgggtgggaactggagagggaatcactctctcccagtgactcagggctatgtcgtgttgagtgtggaccctctaaCCCACCACCAGGGTTAtgtcacaggctggccccaggtccgctctgcccacatgcagtccatcaatcgccgtgacatgggttttgca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10571927 480 - 16319837 gaagggaaaggaatgtgcttattaaggcccactgttttactggggcccattgtatgagggtgaagtttggcagttacccaagaga----cttccttctctcctccctctgtgcccgagctgttttgtctgtgtgttcctgtctgctcttcctggcagcctgtagttagaagagaaatgatttccttgaaatgcatgggctagaaaggggagctggaccttaaagtgacagtgtttgtccaagatgaggg-tgctcctgctctgtcacacagaagcacaaagaggagactttcccttcgatgtaatttactataattgaaaggactgggtgggaactggagagggaatcactctctcccagtgactcagggctatgtcgtgttgagtgtggaccctctaaCCCACCACCAGGGTTAtgtcacaggctggccccaggtccgctctgcccacatgcagtccatcaatcgccgtgacatgggttttgca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12194085 480 + 20526591 gaagggaaaggaatgtgcttattaaggcccactgttttactggggcccattgtatgagggtgaagtttggcagttacccaagaga----cttccttctctcctccctctgtgcccgagctgttttgtctgtgtgttcctgtctgctctttctggcagcctgtagttagaagagaaatgatttccttgaaatgcatgggctagaaaggggagctggaccttaaagtgacagtgtttgtccaagatgaggg-cgctcctgctctgtcacacagaagcacaaagaggagactttcccttcgatgtaatttactataattgaaaggactgggtgggaactggagagggaatcactctctcccagtaactcagggctatgtcgtgttgagtgtggaccctctaaCCCACCACCAGGGTTAtgtcacaggctggccccaggtccgctctgcccacatgcagtccatcaatcgccgtgacatgggttttgca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119167028 480 + 128539186 gaagggaaaggaatgtgcttattaaggtccactgttttactggggcccattgtatgagggtgaagtttggcagttacccaagaga----tttccttctcttctccctctgtgcccgagctgtcttttctgtgttttcctgtctgctctttctggtggcttgtaattagaagagaaatgatttccttgaaatgcatgggctagaaaggggagctggaccttaaagtggcagtgtttgtccaagatgaggg-tgcccctgctctgtcacacagaagcacaaagaggagactttcccttcgatgtaatttactataattggaaggactgggtgggaactggagagggaatcactctctcccagtgactcaCGGCTGTGTCGTGTTGAGTGTGGACCCTCTAACCCACCACCAGGGTTAtgtcacgggctggccccaggtccgctctgcccacatgtagtccatcaatcgccgtgacatgggttttgaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 479922 480 + 6255621 gaagggaaaggaatgtgcttattaaggcccactgttttactggggcccattgtatgagggtgaagtttggcagttacccaagaga----cttccttctctcctccctctgtgtccgagctgttttgtctgtgtgttcctgtctgctctttctggcagcctgtagttagaagagaaatgatttccttgaaatgcatgggctagaaaggggagctggaccttaaagtgacagtgtttgtccaagatgaggg-ggctcctgctctgtcaCACAGAagcacaaagaggagactttcccttcgatgtaatttactataattgaaaggactgggtgggaactggagagggaatcactctctcccagtgactcagggctatgtcgtgttgagtgtggaccctctaaCCCACCACCAGGGTTAtgtcacaggctggccccaggtccgctctgcccacatgcagtccatcaatcgccgtgacatgggttttgca i manLeu1.NW_012103587v1 I 2710 C 0 s colAng1.NW_012116043v1 4543685 480 - 8658521 gaagggaaaggaatgtgcttattaaggtccactgttttactggggcccattgtatgagggtgaagtttggcagttacccaagaga----cttccttctctcctccctctgtgccggagctgtcttatctgtgttttcctgtctgctctttctggcggcttgtagttagaagagaaatgatttccttgaaatgcatgggctagaaaggggagctggaccttaaagtggcagtgtttgtccaagatgaggg-tgctcctgctctgtcacacagaagcacaaagaggagactttcccttcgatgtaatttactataattgaaaggactaggtgggaactggagagggaatcactctctcccagtgactcaCGGCTGTGTTGTGTTGAGTGTGGACCCTCTAACCCACCACCAGAGTTAtgtcacaggctggccccaggtctgctctgcccacatgcagtccatcaatcgccgtgacatgggttttgca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114744929 437 + 124281992 gaagggaaaggaatgtgc---ttaaggcccattgttttactggggcccattgtgtgagggtgaagtttggcagttaccctagagggtaacttcctcccctcctccctctgtgcctgagctgtcttatctgtgttttactgtctgctctttctggcggctggtagttaga--agaagtgatttcc----------------------aggagctggaactgaaagtggcagtgtttgc------tgacgg-tgctgctgctctgtcaCACAGAAGCACCACGAGGAGACTTTCCCTTCCGTGTAATTTAATGCAATTAAAAGGACT-----------GGAGAGGGAATCACTCTGTCCCTGTGGGTCAGGGCTGTGTCGTGTTGAGTGTGGACCCTCTAAC---CCACGAGGGTTATGTCATGGGCTGGCCCCAGGTCTGCTTTGCCTGCATGCTGTCCATCAGTTGCCGTGATACGGCTTTTGTG i calJac3.chr9 C 0 M 709 s saiBol1.JH378194 391058 443 - 9212255 gaagggaaaggaatgtgcttattaaggcccattgttttactggggcccgttgtatgagggtgaagcttggcagttaccccagagt----cttcctcccctcctccctctgtgcctgagctgtcttatctgtgttttactgtctgctctttctggccactggtggttagaggagaagtgatttcc----------------------aggagctggaactgaaagtggtggtgtttgccggagatgacgg-tgctcctgct---------------ACCACGGGGAGACTTTCCCTTCCGTGCAATTTAATGCAATTAAAAGGACTGGGGAGGAACCGGAGAGGGAATCGCTCTGTCCCCGTGGGTCAGGGCTGTGTCGTGTTGAGTGTGGACCCCATAACCCACCACCAGGGTTAtgtcatgggctggtcccaggtctgctttgcccgcctgctgtccatcagttgccgtggtatggcttttgcg i saiBol1.JH378194 C 0 I 4 s cebCap1.NW_016107484v1 2805226 434 + 4466143 gaagggaaaggaatgtgcttattaaggcccattgttttcctggggcccagtgtatgagggtgaagtttggcagttaccccagaga----cttcctcccctcctccctctgtgcctgagctgtcttatctgtgttttactgtctgctctttctggcggctggtggctaga-----------------------------------------------actgaacgtggtggtgtttgctgggggtgacggatgctcctgctctgtcaCACAGAGGCACCACCAGGAGACTTTCCTTTCCGTGTAATTTAATGCAATTAAGAGGACTGGGGAGGAACTGGAGAGGGAATCACTCTGTCCCTGTGGGTCAGGGCTGTGTCGTGTTGAGTGTGGACCTCATAACCCACCACCAGGGTTATGTCATGGACGGGCCccaggcctgctttgcccacatgctgtccatcagttgctgtgatacggctgttgtg i cebCap1.NW_016107484v1 C 0 I 4 s aotNan1.NW_018491581v1 1502119 450 + 5364348 gaagggaaaggaatgtgcttattaaggcccattgtttgactggggcccattgtatgagggtgaagtttggcagttaccccagaga----cttcctcccctcctccctctgtgcctgagctgtcttatctgtgttttactgtctgctctttctggcggctggtagttaga-----agtgatttcc----------------------aggagctggaactgaaagtggcggtgtttgccggagatgacag-tgctcctgctctgtcaCACAGAAGCACCACGAGGAGACTTGCCCTTCCGTGTAATTTAATGCAATTAAAAGAACTGGGGAGTAACTGGAGAGGGAATCACTCTGTCCCTGTGGGTCAGGGCTGTGTCGTGTTGAGTGTGGACCCTCGAAC---CCACCAGGGTTAtgtcacgggctggccccaggtctgttttgccctcatgctgtccatcagttgctgtgatacggcttttgtg i aotNan1.NW_018491581v1 C 0 I 5 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e otoGar3.GL873618 4238366 129 + 7922563 I a score=2125242.000000 s hg38.chr12_KI270834v1_alt 2555 241 + 119498 aaacaga----tttatttgcaaggccgccaagcaaggaggcaggtgagcagccctcacatctgccttcctgaagataaggcttagggatgtttaggcattaggggagtggggtggtcgaagttgagggggaaggtggttggtggtgggaaaaaggaagtaacaggttcattctgagcaagtgtagctggggttcacagcatttcacaggacataggcacagaaagtgggggcatcggcatggcct s panTro5.chr12 127288619 245 + 137163284 aaacagaaagatttatttgcaaggccgccaagcaaggaggcaggcgagcagccctcacatctgccttcctgaagataaggcttagggatgtttaggcgttaggggagtggggtggtcgaagtcgagggggaaggtggttggtggtgggaaaaaggaagtaacaggttcattctgagcaagtgtagctggggttcacagcatttcacaggacataggcacagaaagtgggggcgttgacatggcct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125639652 245 + 135337776 aaacagaaagatttatttgcaaggccgccaagcaaggaggcaggcgagcagccctcacatctgccttcctgaagataaggcttagggatgtttaggcgttaggggagtggggtggtcgaagtcgagggggaaggtggttggtggtgggaaaaaggaagtaacaggttcattctgagcaagtgtagctggggttcacaccatttcacaggacataggcacagaaagtgggggcgttgacatggcct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8152309 245 - 8369578 aaacagaaagatttatttgcaaggccgccaagcaaggaggcaggcgagcagccctcacatctgccttcctgaagataaggcttagggatgtttaggcgttgggggagtggggtggtcgaagtcgagggggaaggtggttggtggtgggaaaaaggaagtaacaggttcattctgagcaagtgtagctggggttcacagcatttcacaggacacaggcacagaaagtgggggcgtcggcgtggcct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97800771 245 + 106955855 aaacagaaagatttatttgcaaggccgccaagcaaggaggcaggcaagcagccctgacatctgcctccctgaagacaaggcttagggatgtttaggcgttaggggagtggggtggtcgaagtcgagggggaaggtggttggtggtgggaaaaaggaagtaacaggttcattctgagcaagtgtagctggggttcacggcatttcacaggacataggcacagaaagtgggggcattggcatggcct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123859106 244 + 133663169 aaacagaaagatttattcgcaaggccgccaagcaaggaggcaggcgagcagccctcacatctgcctccctgaagataaggcttagggatgtttaggggttaggggagtggggtggttgaagttgagggggaaggtggttgatggtgggaaaaaggaagtaacaggttcattctgaacaagtgtagttggggttcacagc-tttcacagaacataggcacagaaaatgggggtgtcagcgtggcct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128167301 244 + 137757926 aaacagaaagatttattcgcaaggccgccaagcaaggaggcaggcgagcagccctcacatctgcctccctgaagataaggcttagggatgtttaggggttaggggagtggggtggttgaagttgagggggaaggtggttgatggtgggaaaaaggaagtaacaggttcattctgaacaagtgtagttggggttcacagc-tttcacagaacataggcacagaaaatgggggtgtcagcgtggcct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10572407 244 - 16319837 aaacagaaagatttattcgcaaggctgccaagcaaggaggcaggcgagcagccctcacatctgcctccctgaagataaggcttagggatgtttaggggttaggggagtggggtggttgaagttgagggggaaggtggttgatggtgggaaaaaggaagtaacaggttcattctgaacaagtgtagttggggttcacagc-tttcacagaacataggcacagaaaatgggggtgtcagcgtggcct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12194565 244 + 20526591 aaacagaaagatttattcgcaaggccgccaagcaaggaggcaggcgagcagccctcacatctgcctccctgaagataaggcttagggatgtttaggggttaggggagtagggtggttgaagtcgagggggaaggtggttgatggtgggaaaaaggaagtaacaggttcattctgaacaagtgtagttggggttcacagc-tttcacaggacataggcacagaaaataggggtgtcagcgtggcct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119167508 244 + 128539186 aaacagaaagatttattcacaaggccaccaagcaaggaggcaggcgagcagccctcacatctgcctccctgaagataaggcttagggatgtttaggggttagggtagtggggtggttgaagtcgagggggaaggtggttggtggtgggaaaaaggaagtaacaggttcattctgaacaagtgtagctggggttcacagc-tttcacaggacataggcacagaaaatgggggtgtcagcgtggcct i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 480402 244 + 6255621 aaacagaaagatttattcgcaaggccgccaagcaaggaggcaggcgagcagccctcacatctgcctccctgaagataaggcttagggatgtttaggggttaggggagtggggtggttgaagtcgagggggaaggtggttgatggtgggaaaaaggaagtaacaggttcattctgaacaagtgtagttggagttcacagc-tttcacaggacataggcacagaaaatgggggtgtcagcgtggcct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4544165 244 - 8658521 aaacagaaagatttatttgcaaggccaccaagcaaggaggcgggcgagcagccctcacatctgccttcctgaagataaggcttaggggtgtttaggggttaggggagtggggtggttgaagtcgagggggaaggtggttggtggtgggaaaaaggaagtaacaggttcattctgaacaagtgtagctggggttcacagc-tttcacaggacataagcacagaaaatgggggtgtcagcatggcct i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 391505 240 - 9212255 ----agaaagatttattggcaaggctgccaagcaaggaggcaggtgagca-ccctcaaatctgccttcccaaagataaggcttagggatgtttaggggttaggggagtagggtggtctaggtcgagggggaaagtgattggtggtgggaaaaaggaagtagcaggttcattccgagcaagcgtagttagggttcatggcatttcacaggacataggtacagaaaatggtggcgccagcgtggccg i saiBol1.JH378194 I 4 C 0 s cebCap1.NW_016107484v1 2805664 240 + 4466143 ----agaaagatttatttgcaaggctgccaagcaaggaggcaggtgagca-ccctcaaatctgccttcccaaagataaagcttagggatgtttaggggttaggggagtggggtgctttaagttgcgggggaaggtgattggtggtgggaaaaaggaagtaacaggctcattctgagcaggcggagttagggttcatggcatttcacaggacataggtacagaaaatggtggcgccagcatggccg i cebCap1.NW_016107484v1 I 4 C 0 s aotNan1.NW_018491581v1 1502574 240 + 5364348 ----agaaagatttatttgcagggctgccaagcaaggaggcaggtgagca-ccctcaaatctgccttcccaatgataaggcttagggatggttaggggttcggggagtggggtggtctaagtcgagggggaaggtgattggtggtgggaaaaaggaagtaacaggttcattctgagcaagcgtagttagggttcatggcatttcacaggacacaggtacagaaaatggtggcgccagcatggcct i aotNan1.NW_018491581v1 I 5 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e otoGar3.GL873618 4238366 129 + 7922563 I e calJac3.chr9 114745366 709 + 124281992 M a score=2890392.000000 s hg38.chr12_KI270834v1_alt 2796 309 + 119498 gagggtagagtgtttggcctt-ccaacgtcaaaaaggccacctctggggcacttgcacaggcccagttgaaaggtcagtggtctcaaccagttggaactggacagaggagttggttcaacttcctgaaaaacaaccaaagtcaccatcgccatcgtggcctgtgaatgttatccat-agtagccagtgaaggttaagtttcagcgttcagtggtgagaccttcagcttcatgggaaaaggggg-aaaaaaataaaaagcaagtgaccataagcCACAGAGCAGGCA---CTGATGACCCTTACCCTTCAGTTTCA s panTro5.chr12 127288864 308 + 137163284 gagggtggagtgtttggcctt-ccaacgtcaaaa-ggccacctctggggcacttgcacaggcccagttgaaaggtcagtggtctcaaccagttggaactggacagaggagttggttcaactttctgaaaaacaaccaaagtcaccatcgccatcgtggcctgtgaatgttatccat-agtagccagtgaaggttaagtttcagcgttcagtggcgagaccttcagcttcatgggaaaaggggg-aaaaaaataaaaagcaagtgaccataagcCACAGAGCAGGCA---CTGATGACCCTTACCCTTCAGTTTCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125639897 307 + 135337776 gagggtggagtgtttggcctt-ccaacgtcaaaa-ggccacctctggggcacttgcacaggcccagttgaaaggtcagtggtctcaaccagttggaactggacagaggagttggttcaactttctgaaaaacaaccaaagtcaccatcgccatcgtggcctgtgaatgttatccat-agtagccagtgaaggttaagtttcagcgttcagtggcgagaccttcagcttcatgggaaaaggggg--aaaaaataaaaagcaagtgaccataagcCACAGAGCAGGCA---CTGATGACCCTTACCCTTCAGTTTCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8152554 306 - 8369578 gagggtggagtgtttggcctt-ccaacgtcaaaa-ggccacctctggggcacttgcacaggcccagctgaaaggtcagtggtctcaaccagttggaactggacagaggagttggttcaacttcctgaaaaacaaccaaagtcaccatcgccatcgtggcctgtgaatgttatccat-agtagccagtgaaggttaagtttcagcgttcagtggtgagaccttcagcttcatgggaaaagggg---aaaaaataaaaagcaagtgaccataagcCACAGAGCAGGCA---CTGATGACCCTTACCCTTCAGTTTCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97801016 306 + 106955855 gagggtggagtttttggcctt-cccacgtcaaaa-ggccacctctggggcacttgcacaggcccagttgaaaggtcagtggtctcaaccagttggaactggacagaggagttggctcaacttcctgaaaaataaccaaagtgaccatcgccatagtgacctgtgaatgttatccat-agtagccagtgaaggttaagtttcagcgttcagtggtgaggccttcagcttcacgggaaaagggg---aaaaaataaaaagcaagtgaccatgagcCACAGAGCAGGCA---CTGATGACACTTATCCCTCAGTTTCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123859350 309 + 133663169 gagggtggagtttttggcctt-ccaacatcaaaa-ggccacctctgggacacttgcacaggcccagttgaaaggtcagtggtctcaaccagttggaactggacagaagagttggctcaacttcctgaaaaacaaccaaagtgatcatcgccatagtgacctgtgaatgttatccat-agtagctggtgaaggttaagtttcagcattcagtggtgaggacttcagcttcatgggcaaaggggaaaaaaaaataaaaagcaagtgaccataagcCACAGAGCAGGCA---CTGATGACACTTACCCCTCAGTTTCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128167545 309 + 137757926 gagggtggagtttttggcctt-ccaacatcaaaa-ggccacctctgggacacttgcacaggcccagttgaaaggtcagtggtctcaaccagttggaactggacagaagagttggctcaacttcctgaaaaacaaccaaagtgatcatcgccatagtgacctgtgaatgttatccat-agtagctggtgaaggttaagtttcagcattcagtggtgaggacttcagcttcatgggcaaaggggaaaaaaaaataaaaagcaagtgaccataagcCACAGAGCAGGCA---CTGATGACACTTACCCCTCAGTTTCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10572651 309 - 16319837 gagggtggagtttttggcctt-ccaacatcaaaa-ggccacctctgggacacttgcacaggcccagttgaaaggtcagtggtctcaaccagttggaactggacagaggagttggctcaacttcctgaaaaacaaccaaagtgatcatcgccatagtgacctgtgaatgttatccat-agtagctggtgaaggttaggtttcagcattcagtggtgaggacttcagcttcatgggcaaaggggaaaaaaaaataaaaagcaagtgaccataagcCACAGAGCAGGCA---CTGATGACACTTACCCCTCAGTTTCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12194809 309 + 20526591 gagggtggagtttttggcctt-ccaacatcaaaa-ggccacctctgggacacttgcacaggcccagttgaaaggtcagtggtctcaaccagttggaactggacagaggagttggctcaacttcctgaaaaacaaccaaagtgatcatcgccatagtgacctgtgaatgttatccat-agtagctggtgaaggttaagtttcagcattcagtggtgaggacttcagcttcatgggcaaaggggaaaaaaaaataaaaagcaagtgaccataagcCACAGAGCAGGCA---CTGATGACACTTACCCCTCAGTTTCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119167752 309 + 128539186 gagggtggagtttttggcctt-ccaacatcaaaa-ggccacctctgggatacttgcacaggcccagttgaaaggtcagtggtctcaaccagttggaactggacagagcagttggctcaacttcctgaaaaacagccaaagtgatcatcgccatagtgacctgtgaatgttatccat-agtagctggtgaaggttaagtttcagcattcagtggtgaggccttcagcttcatgggcaaaggggaaaaaaaaataaaaagcaagtgactataagcCACGGAGCAGGCA---CTGATGACACTTACCCCTCAGTTTCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 480646 309 + 6255621 gagggtggagtttttggcctt-ccaacatcaaaa-ggccacctctgggacacttgcacaggcccagttgaaaggtcagtggtctcaaccagttggaactggacagaggagttggctcaacttcctgaaaaacaaccaaagtgatcatcgccatagtgacctgtgaatgttatccat-agtagctggtgaaggttaagtttcagcattcagtggtgaggacttcagcttcatgggcaaaggggaaaaaaaaataaaaagcaagtgaccataagcCACAGAGCAGGCA---CTGATGACACTTACCCCTCAGTTTCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4544409 307 - 8658521 gagggtggagtttttggcctt-ccaatatcaaaa-ggccacctctgggacacttgcataggccgagttgaaaggtcagtggtctcaaccagttggaactggacagaggagttggctcaacttcctgaaaaacaagcaaagtgatcatcgccatagtgacctgtgaatgttatccat-agtagctggtgaaggttaagtttcagcattcagtgatgaggacttcagcttcacgggcaaaggggaaaaaaaa--aaaaagcaagtaaccataagcCACAGAGCAGGCA---CTGATGACACTTACCCCTCAGTTTCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114746075 288 + 124281992 gagggtggagtttttggccct-ccagcatcaaaa-ggccgcctttggggcatttgcacaggcccagctgaaaggctggtggtatctaccggtttgaactggacagaggagttggcccaagttcctgaaaaacagcataagtggccatcgccatagtgatccg----tgttatccatgaacagccagtgaagg--------------tcggaggtgaggccttcagcttcgt-------gggaaaaaaataacaaaaagcaagtgaccataaacCACCAAGCAGGCAGACCTGATGACACTTACCCCTCAGTTTCA i calJac3.chr9 M 709 C 0 s saiBol1.JH378194 391745 308 - 9212255 gaggatggagtttttggccctcccaacgtcaaaa-ggccacctttggggcatttgcacaggcccaggtgaaaggccggtggtatctaccggtttgaactggacagaggagctggcccaagttcctgaaaaacagcctaagtgaccatcgccatagtgatctgtgactgttatccatgaatagccagtgacggttaagtttcagcgttcggtggtgaggccttcagcttcgtg------gggaaaaaaataacaaaaagcaagtgaccataagcCACAGGGCAGGCAGACCTGATGACACTTACCCCTCAGTTTCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2805904 304 + 4466143 gagggtggagtttttggccct-ccaatgtcaaaa-ggccacctttggggcattggcacagg-ccaggtgaaaggtcggtggtatctaccggtttgaactggacagaggagttggcccaagctcctaaaaaacaacccaagtgaccatcgccatagtgatatgtggatgttatccgtgaatagccagtgaaggttaagtctcagcattcggtggtgaggccttcagcttcgt--------gggaaaaaataacaaaaagcaagtgaccgtaagcCACAGGGCAGGCAGACCTGATGACACTTACTCCTCAGTTTCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1502814 307 + 5364348 gagggtggaggtttcggccct-ccaacgtcaaaa-ggccgcttttggggcatttgcacaggcccaggtgaaaggtcggtggtatctaccggtttgaactggacagaggagttggcccaagttcctgaaaaacaacctaagtgaccttcgccatagtgatctgtgaatgttatccatgaatagccggtgaaggttaagtttcagcgttcggtggtgaggccttcagcttcgtg------ggaaaaaaaataacaaaaagcaagtgaccataagcCACAGAGCAGGCAGACCTGATGACACTTCCCCCTCGGTTTCA i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I e otoGar3.GL873618 4238366 129 + 7922563 I a score=85042.000000 s hg38.chr12_KI270834v1_alt 3105 9 + 119498 GTTCTGACA s panTro5.chr12 127289172 9 + 137163284 GTTCTGACA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125640204 9 + 135337776 GTTCTGACA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8152860 9 - 8369578 GTTCTGACA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97801322 9 + 106955855 GTTCTGACA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123859659 9 + 133663169 GTTCTGACA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128167854 9 + 137757926 GTTCTGACA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10572960 9 - 16319837 GTTCTGACA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12195118 9 + 20526591 GTTCTGACA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119168061 9 + 128539186 GTTCTGACA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 480955 9 + 6255621 GTTCTGACA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4544716 9 - 8658521 GTTCTGACA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114746363 8 + 124281992 GTTCTGAC- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 392053 8 - 9212255 GTTCTGAC- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2806208 8 + 4466143 GTTCTGAC- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1503121 8 + 5364348 GTTCTGAC- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4238495 9 + 7922563 GTTGTGACA i otoGar3.GL873618 I 129 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 776658 2286 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I a score=926038.000000 s hg38.chr12_KI270834v1_alt 3114 87 + 119498 CCCTCCTTCCTGTC-CG-TGCT--GTGCTAGGC------CAGGGGGTTCAGAGACCGATGAACCAGTAGGGCCTCCTTTCTGACCATTTCCATGGCC s panTro5.chr12 127289181 87 + 137163284 CCCTCCTTCCTGTC-CG-TGCT--GTGCTAGGC------CAGGGGGTTCAGAGACCGATGAACCAGTAGGGCCTCCTCTCTGACCATTTCCATGGCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125640213 87 + 135337776 CCCTCCTTCCTGTC-CG-TGCT--GTGCTAGGC------CAGGGGGTTCAGAGACCGATGAACCAGTAGGGCCTCCTTTCTGACCATTTCCATGGCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8152869 87 - 8369578 CCCTCCTTCCTGTC-CG-TGCT--GTGCTAGGC------CAGGGGGTTCAGAGACTGACGAACCAGTAGGGCCTCCTTTCTGACCATTTCCATGGCC i gorGor5.CYUI01015152v1 C 0 I 256 s nomLeu3.chr10 97801331 87 + 106955855 CCCTCCTTCCTGTC-AG-TGCT--GTGCTAGGC------CAGGGGGTTCAGAGACGAATGAACCAGTAGGGCCTCCTTTCTGACCATTTCCGTGGCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123859668 87 + 133663169 TGCTCCTTCCTGTC-AG-TGCT--GTGCTAGGC------CAGGGGGTTCAGAGACTGATGAACCAGTAGGGCCTCCTTTCTGACCATTTCCATGGCC i rheMac8.chr11 C 0 I 1 s macFas5.chr11 128167863 87 + 137757926 TGCTCCTTCCTGTC-AG-TGCT--GTGCTAGGC------CAGGGGGTTCAGAGACTGATGAACCAGTAGGGCCTCCTTTCTGACCATTTCCATGGCC i macFas5.chr11 C 0 I 4 s macNem1.NW_012010578v1 10572969 87 - 16319837 TGCTCCTTCCTGTC-AG-TGCT--GTGCTAGGC------CAGGGGGTTCAGAGACTGATGAACCAGTAGGGCCTCCTTTCTGACCATTTCCATGGCC i macNem1.NW_012010578v1 C 0 I 4 s cerAty1.NW_012001186v1 12195127 87 + 20526591 CGCTCCTTCCTGTC-AG-TGCT--GTGCTAGGC------CAGGGGGTTCAGAGACTGATGAACCAGTAGGGCCTCCTTTCTGACCATTTCCATGGCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119168070 87 + 128539186 CCCTCCTTCCTGTC-AG-TGCT--GTGCTAGGC------CAGGGGGTTCAGAGACTGATGAACCAGTAGGGCCTCCTTTCTGACCATTTCCATGGCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 480964 87 + 6255621 CGCTCCTTCCTGTC-AG-TGCT--GTGCTAGGC------CAGGGGGTTCAGAGACTGATGAACCAGTAGGGCCTCCTTTCTGACCATTTCCATGGCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4544725 87 - 8658521 CCCTCCTTCCTGTT-GG-TGCT--GTGCTAGGC------CAGGGGGTTCAGAGACCGATGAACCAGTAGGGCCTCTTTTCTGACCATGTCCATGGCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114746371 92 + 124281992 -CCTCTTTCCTGTC-AG-TGCT--GTGCTAGGTGCTAGGCCCGGGGTACAGAGACTGATGAACCAGTAGGGCCTCCTTTCTGACCATTTCCATGGCA i calJac3.chr9 C 0 I 30 s saiBol1.JH378194 392061 86 - 9212255 -CCTCCTTCCTGTC-AG-TGCT--GGGCTGGGC------CTGGGGGTACAGAGACGGATGAACCAGTAGGGTCTCCTTTCTGACCATTTCCATGGCA i saiBol1.JH378194 C 0 I 28 s cebCap1.NW_016107484v1 2806216 86 + 4466143 -CCTCCTTCCTGTC-AG-TGCT--GTGCTAGGC------CGGGGGGTACAGAGACCAGTGAACCAGTACGGCCTCCTTTCTGACCATTTCCATGGCA i cebCap1.NW_016107484v1 C 0 I 12 s aotNan1.NW_018491581v1 1503129 88 + 5364348 -CCTCCTTCCTGTC-AG-TGCTACGTGCTAGGC------CGGCGGGTACAGAGACTGATGCACCAGTAGGGCCTCCTTTCTGACCATTTCCATGGCA i aotNan1.NW_018491581v1 C 0 I 28 s otoGar3.GL873618 4238504 62 + 7922563 C---CCTTCCTGTC-AGCCCCT--GTGC-AGGC------CTGGGAAT----------ATGAA-----ATAGCCTCCTTTATGAACACTTT------- i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 778944 88 - 1116856 ccctactttttatcaag-tcct--gtgctaggc------gtgggaatatagagatacattaaacagTGGATTCTTCTTTCCAGCCATTTCTGTTTCC i dasNov3.JH568189 I 2286 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e canFam3.chr26 33107495 114 - 38964690 I a score=1993745.000000 s hg38.chr12_KI270834v1_alt 3201 201 + 119498 gtgtgtgtgtgtgtgtgt--------------------------------TT---ACAACACTCAGTGATTCAACACTTGCTGCTCACGTGCTGGGTACGTGGCGTTCTGCTG---TCTAGCGTCATGCTTAGCTGCCTTACTCACACCCATTCCATATACACAGAACTAAAACATGGGCAAATTCACAGGCCAAATGCAAAACCTTAAAGGAAGGCC-AGTCAGGTGAAGAGCAGAGCT s panTro5.chr12 127289268 210 + 137163284 gtgtgtgtgtgtgtgtgt----------------------gtgtgtgtgtTT---ACAACACTCAGTGATTCAACACTTGCTGCTCACGTGCTGGGTACGTGGCGTTCTGCTG---TCTAGCGTCATGCTTAGCTGCCTTACTCACACCCATTCCATATACACAGAACTAAAACATGGGTAAATTCACAGGCCAAATGCAAA-CCTTAAAGGAAGGCC-AGTCAGGTGAAGAGCAGAGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125640300 232 + 135337776 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTT---ACAACACTCAGTGATTCAACACTTGCTGCTCACGTGCTGGGTACGTGGCGTTCTGCTG---TCTAGCGTCATGCTTAGCTGCCTTACTCACACCCATTCCATATACACAGAACTAAAACATGGGTAAATTCACAGGCCAAATGCAAA-CCTTAAAGGAAGGCC-AGTCAGGTGAAGAGCAGAGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8153212 199 - 8369578 gtgtgtgtgtgtgtgtgt--------------------------------gt---ACAACACTCAGTGATTCAACACTTGCTGCTCACGTGCTGGGTACGTGGCGTTCTGCTG---TCTAGCGTCATGCTTAGCTGCCTTACTCACACCCATTCCATATACACAGAACTAAAACAT-GGCAAATTCACAGGCCAAATGCAAA-CCTTAAAGGAAGGCC-AGTCAGGTGAAGAGCAGAGCT i gorGor5.CYUI01015152v1 I 256 C 0 s nomLeu3.chr10 97801418 208 + 106955855 GCGTGTGCACGCGCGTGT------------------------CTGTGTGTTT---ACAACACTCAGTGATTCAACACTTGCTGCTCACGTGCTGGGTACGTGGCGTTCTGCTG---TCTAGAGTCATGCTTAGCTGCCTTACTCACACCCATTCCATATACACAGAACTAAAGCATGGGCAAATTCACAGGCCAAATGCAAA-CCTTAAAGGAAGGCC-AGTCAGGTGAAGAGCAGAGCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123859756 225 + 133663169 gtgtgtgtgtgtgtgtgt----------gtgtgtgtgtgtgtgtgtgtgtTTACAACAACACTCAGTGATTCGACACTTGCTGCTCACGTGCTGGGTCCATGGCGTTTTGCTG---TCTAGCATCATACTTAGCTCCCTTACTCACACCCATTCCATATACACAGAACCAAAACATGGGCAAATTCACAGGCCAGATGTAAA-CCTTAAAGGTAGGCC-AGTCAGGTGAAGAGCAGAGCT i rheMac8.chr11 I 1 C 0 s macFas5.chr11 128167954 225 + 137757926 gtgtgtgtgtgtgtgtgt----------gtgtgtgtgtgtgtgtgtgtgtTTACAACAACACTCAGTGATTCGACACTTGCTGCTCACGTGCTGGGTCCATGGCGTTTTGCTG---TCTAGCATCATGCTTAGCTCCCTTACTCACACCCATTCCATATACACAGAACCAAAACATGGGCAAATTCACAGGCCAGATGTAAA-CCTTAAAGGTAGGCC-AGTCAGGTGAAGAGCAGAGCT i macFas5.chr11 I 4 C 0 s macNem1.NW_012010578v1 10573060 225 - 16319837 gtgtgtgtgtgtgtgtgt----------gtgtgtgtgtgtgtatgtgtgtTTACAACAACACTCAGTGATTCGACACTTGCTGCTCACGTGCTGGGTCCATGGCGTTTTGCTG---TCTAGCATCATGCTTAGCTCCCTTACTCACACCCATTCCATATACACAGAACCAAAACATGGGCAAATTCACAGGCCAGATGTAAA-CCTTAAAGGTAGGCC-AGTCAGGTGAAGAGCAGAGCT i macNem1.NW_012010578v1 I 4 C 0 s cerAty1.NW_012001186v1 12195214 225 + 20526591 GCgtgtgtgtgtgtgtgt----------gtgtgtgtgtgtgtgtgtgtgtTTACAACAACACTCAGTGATTCGACACTTGCTGCTCACGTGCTGGGTCCATGGCGTTTTGCTG---TCTAGCATCATGCTTAGCTCCCTTACTCACACCCATTCCATATACATAGAACCAAAACATGGGCAAATTCACAGGCCAGATGTAAA-CGTTAAAGGTAGGCC-AGTCAGGTGAAGAGCAGAGCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119168157 196 + 128539186 --GTGTGTGTGTGTGTTT-------------------------------------ACAACAGTTAGTGATTCGACACTTGCTGCTCATGTGCTGGGTCCATGGCGTTTTGCTG---TCTAGCGTCATGCTTAGCTCCCTTACTCACACCCATTCCATATACACAGAACCAAAACATGGGCAAATTCACAGGCCAGATGTAAA-CCTTAAAGGTAGGCC-AGTCAAGTGAAGAGCAGAGCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 481051 223 + 6255621 --gtgtgtgtgtgtgtgt----------gtgtgtgtgtgtgtgtgtgtgtTTACAACAACACTCAGTGATTCGACACTTGCTGCTCACGTGCTGGGTCCATGGCGTTTTACTG---TCTAGCATCATGCTTAGCTCCCTTACTCACACCCATTCCATATACACAGAACCAAAACATGGCCAAATTCACAGGCCAGATGTAAA-CCTTAAAGGTAGGCC-AGTCAGGTGAAGAGCAGAGCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4544812 213 - 8658521 ACgtgtgtgtgtgtgtgt----------------------gtgtgtgtgtTTACAACAACACTCAGTGATTTGACACTTGCTGCTCACATGCTGGGTCCATGGCGTTTTGCTG---TCTAGCATCATGCTTAGCTCCCTTACTCACACTCATTCCATATACACAGAACCAAAACATGGGCAAATTCACAGGCCAGATGTAAA-CCTTAAAGGTAGGCC-AGTCAAGTGAACAGTAGAGCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114746493 200 + 124281992 gtgtgtgtgtgtgtgtgt--------------------------------TTACGGAAACACTCAGTGATTCAACACTTGCTGCTTACATGCTGGGTATGTGGCATTCTGCTG---TCTAGCACCACACTTAGCTGCCTTACTCACACCCATTCTGTACACACAGAACCAA---AACGGTACATTCACAGGCCAAACGCAGA-CGTTAAAAGAAGGCC-GGTCAGGTGAGGAGCAGAGCT i calJac3.chr9 I 30 C 0 s saiBol1.JH378194 392175 197 - 9212255 gtgtgtgtgtgtgtgtgt--------------------------------TTACAACAACACTCTGTGATTCAGCCCTTGCCGCTTCCATGCTGGGTACGTGGCATTCTGCTG---TCTAGTGCCACACTTCGCTGCGTTACTCACACCCATTCCGTACCCACAGAAC------ATGGGTACATTCACAGGCCAAATGCAGA-TGTTAAAAGACGGCC-AGTCAGGTGAGGAGCAGAGCT i saiBol1.JH378194 I 28 C 0 s cebCap1.NW_016107484v1 2806314 202 + 4466143 gtgtgtgtgtgtgtgtgt--------------------------------TTACAACAACACTCTGTGATTCAACACTTGCTGCTTACATGCTGGGTACATGGCATTCTGCTG---TCTAGCGCCACACTTAGCTGCCTTACTCATACCCATTCCGTACACACAGAACCAAAACATGGGTACATTCACAGGCCAAATGCAGA-CGTTAAAAGACGGCC-AGTC-GGTGAGGAGCAGAGCT i cebCap1.NW_016107484v1 I 12 C 0 s aotNan1.NW_018491581v1 1503245 188 + 5364348 gtgtgtgtgtgtgtgtgt-----------------------------------------------gtgATTCAACACTCGCTGCTGACATGCTGGGTACGTGGCATTCTGCTG---TCTAGCGCCACACTTAGCTGCCTTACTCACACCCATTCCGTACACACAGAACCAAAACATGGGTACATTCACAGGCCAAATGCAGA-CGTTGAAAGAAGGCC-AGTCAGGTGAGGAGCAGAGAT i aotNan1.NW_018491581v1 I 28 C 0 s otoGar3.GL873618 4238566 180 + 7922563 -----TCTGTATGTGTGA-----------------------------------CAACATAAATCAGTGACTCAACACTTACTGCACCTGTGCTGACCTCCTGGCATTCCACTG---TCAAGCGCCATAGTT-------------ATACCTGTCTCATACACGTGGAACCAGAAAGTGGGCA-ACCCACAGGCTAAGTTCAAA-CCTTAACAGAAGGCA-AATTGGGTCAAGTGCACA-CT i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 779032 183 - 1116856 --------TTTTGGGTTT--------------------------------TTACGACAAAAATTAGGAA--CAACATTTATTCCTTTTGTGATGTGTACCAAGTGTTCTGCTGGTACCTAGTACCGTGTTTAGCTGCTTTACATTTATTCATTCCATA-------------AAAATGGGCAAAACTGCA-GCCTGATGTGAA-CCTTAAAGGAAGGCCAAGTTAGGTCAAGAACAGGGTT i dasNov3.JH568189 C 0 I 729 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e canFam3.chr26 33107495 114 - 38964690 I a score=1137897.000000 s hg38.chr12_KI270834v1_alt 3402 117 + 119498 GCCC-CCGTTGTGTCTGTGTGCACAGGAGTCTGCCCCGACTGT-CCCGTCTGAATGGGCCCcttcatacctcctctggcacactgcagttttctcatagtactcaaaaccctatgtcat s panTro5.chr12 127289478 117 + 137163284 GCCC-CCGTTGTGTCTGTGTGCAcaggagtctgccccgactgt-cccgtctgaatgggccccttcgtacctcctctggcacgctgcagttttctcatagtactcaaaaccctatgtcat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125640532 117 + 135337776 GCCC-CCGTTGTGTCTGTGTGCAcaggagtctgccccgactgt-cccgtctgaatgggccccttcgtacctcctctggcacgctgcagttttctcatagtactcaaaaccctatgtcat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8153411 117 - 8369578 GCCC-CCGGTGTGTCTGTGTGCAcaggagtctgccccgactgt-cccgtctgaatgggccccttcgtacctcctctggcacgctgcagttttctcatagtactcaaaaccctatgtcat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97801626 117 + 106955855 GCCC-CCGTTGTGTCTGTGTGCACAGGAGTCTGCCCCGACTGT-CCCGTCTGAATGGGCCCcttcgtacctcctctggcacgctgcagttttctcgtagtactcaaaaccctgtgtcat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123859981 117 + 133663169 GCCT-CCGTGGTGTCTGTGTGCAcaggagtctgccccgattgt-cccgtctgaatgggcccctttgtccctcctctggcacactgtggttttctcatagtactcaaaatcctatgtcat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128168179 117 + 137757926 GCCT-CCGTGGTGTCTGTGTGCAcaggagtctgccccgattgt-cccgtctgaatgggcccctttgtccctcctctggcacactgtggttttctcatagtactcaaaatcctatgtcat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10573285 117 - 16319837 GCCT-CCGTGGTGTCTGTGTGCACAGGAGTCTGTCCCGATTGT-CCCGTCTGAATGGGCCCCTTTGTCCCTCCTCTGGCACACTGTGGttttctcatagtactcaaaatcctatgtcat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12195439 117 + 20526591 GCCT-CCGTTGTGTCTGTGTGCAcaggagtctgccccgattgt-cccgtctgaatgggcccctttgtccctcctctggcacactgtagttttctcatagtactcaaaatcctatgtcat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119168353 117 + 128539186 GCCT-CTGTTGTGTCTGTGTGCACAgaagtctgccccgactgt-cccgtctgaattggccccttcgtccctcctctggcacactgtggttttctcatagtactcaaaaccctatgtcat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 481274 117 + 6255621 GCCT-CCGTTGTGTCTGTGTGCACAGGAGTCTGCCCCGATTGT-CCCATCTGAATGGGCCCCTTTGTCCCTCCTCTGGCACACTGTGGttttctcatagtactcaaaatcctatgtcat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4545025 117 - 8658521 GCCT-CTGTTGTGTCTGTGTGCAcaggagtctgccccgactgt-cccgtctgaatgggccccttcgtccctcctctggcacgctgtggttttctcatagtactcaaaaccctatgtcat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114746693 113 + 124281992 G-CC-CTGTTGTGTCTGTGTGCACAgaagtctgccccgaccgt-cccgtctgaatgggccccttcttacctcccctttcacactgcga---tcggatagtactcaacacctcatgtaat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 392372 117 - 9212255 GCCC-CTGTTGTGTCTGTGTGCACAGAAGTCTGCCCCCACCGT-CCCGCCTGAATGCGcccctccgttcctcctctttcacgcttcggttttctggtagtactcagcaccttatgtaat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2806516 115 + 4466143 G-CC-CTGTTGTGTCTGTGTGCGCAGAAGTCTGCCCCGCCCGT-CCCGTCTGAATG-GCcgcttcgtgcctcctctttcatgctgcggttttctggtagtactcaacaccttctgtaat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1503433 116 + 5364348 GCCC-CTGTTGTGTCTGTGTGCCCtgaagtctgccccgaccgt-cccgtccgaatgggccccttcgtacctcctctttcacgctgcggttttctgatagtactcaaca-cttatgtaat i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4238746 116 + 7922563 GCTTGCTGTTGTGTCTGTGCACACAGACTTCTGCCCCTACCCTACCTGCTTGAAGTGAGCCCTTCTTACTTACTGTTG--TGCTATAGTTTTTTCATGGTGTTCAA-ACTCTATGCAAT i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e mm10.chr5 124765737 2613 + 151834684 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 779215 729 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I a score=1409404.000000 s hg38.chr12_KI270834v1_alt 3519 131 + 119498 tatttaatttatagatttg-tt-gattgtttgttgtttgtctccccaagtaagtggcaggttctctgaagctaggagccttg-cccttgataactctgtac---------cccagtccactgcctggcacggagtcagcactg-- s panTro5.chr12 127289595 131 + 137163284 tatttaatttatagatttg-tt-tattgtttgttgtttgtctccccaagtaagtggcaggttctctgaagctaggagccttg-cccttgataactctgtac---------ccctgtccactgcctggcacggagtcagcactg-- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125640649 131 + 135337776 tatttaatttatagatttg-tt-tattgtttgttgtttgtctccccaagtaagtggcaggttctctgaagctaggagccttg-cccttgataactctgtac---------ccctgtccactgcccggcacggagtcagcactg-- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8153528 131 - 8369578 tatttaatttatagatttg-tt-tattgtttgttgtttgtctccccaagtaagtggcaggttctctgaagctaggagccttg-cccttgataactctgtac---------cccagtccactgcctggcacggagtcagcactg-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97801743 131 + 106955855 tatttaatttatatatttg-tt-tattgtttgttgattgtctccctaagtaagcggcaggttccctgaagctacaggccttg-cccttggtaactgtgtac---------cccagtccactgcctggcacggagtcagcactg-- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123860098 131 + 133663169 tatttaatttatgtatttg-tt-tattgtttgttgtatgtctccccaagtaaatggcaggttccctgaagctaggggcgttg-cccttggtaactctgtac---------cccagtccactgcctggcatggagtcagcactg-- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128168296 131 + 137757926 tatttaatttatgtatttg-tt-tattgtttgttgtatgtctccccaagtaaatggcaggttccctgaagctaggggcgttg-cccttggtaactctgtac---------cccagtccactgcctggcatggagtcagcactg-- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10573402 131 - 16319837 tctttaatttatgtatttg-tt-tattgtttgttgtatgtctccccaagtaaatggcaggttccctgaagctaggggcgttg-cccttggtaactctgtac---------cccagtccactgcctggcatggagtcagcactg-- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12195556 131 + 20526591 tatttaatttatgtatttg-tt-tattgtttgttgtatgtctccccaagtaaatggcagtttccctgaagctaggggcgttg-cccttggtaactctgtac---------cctagtccactgcctggcatggagtcagcactg-- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119168470 131 + 128539186 tatttagtttatgtgtttg-tt-tattgtttgttgtatgtctccccaagtaaatggcaggttccctgaagctaggggcgttg-cccttggtaactctgtac---------cccagtccactgcctggcatggagtcagcactg-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 481391 131 + 6255621 tatttaatttatgtatttg-tt-tattgtttgttgtatgtctccccaagtaaatggcaggttccctgaagctaggggcgttg-cccttggtaactctgtac---------cccagtccactgcctggcatggagtcagcactg-- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4545142 131 - 8658521 catttagtttatgtatttg-tt-tattgtttgttctatgtctccccaagtaaatggcaggttccctgaagctaggggtgttg-cccttggtaactctgtac---------cccagtccactgcctggcatggagtcagcactg-- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114746806 131 + 124281992 tatttaatttatacatttg-tt-tattgtttgttgattgtctccccaagcaggtggcaggttccctgaagctagggaccttc-tccttggtaactctgtgc---------cccagcccactgcctggcacggagtcagcactg-- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 392489 131 - 9212255 tatttaatttatacatttg-tt-tattgtttgtcgattgcctccccaagcaggtggcaggttccctgaagctagggaccttc-tccttggtaactctgtgc---------cccagcccactgcctggcacagagtcagcactg-- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2806631 131 + 4466143 tatttaatttatacatttg-tt-tattgtttgttgattgtctccccaagcaggtggcaggttccctgaagctagggaccttc-tccttggtaactctgtgc---------cccagcccgctgcctggcacggagtcagcactg-- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1503549 131 + 5364348 tatttaatttatacatttg-tt-tattgtttgttgattgtctccccaagcaggtggcagattccctgaagctagggaccttc-tccttggtaactctgtgc---------cccagcccactgcctggcacggagtcagcgctg-- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4238862 142 + 7922563 TATTTAATTTCCAGGTTTGTTt-tattgtttattcactgtctccccaagtatgtggtgtcttccctgaggccatgggccttgccccttgtttaccatgtacccccttgcacccatccctctccctggca--aagtcagcaccaat i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124768350 119 + 151834684 TGTTTAATTTGTAGGCTTG-TTCCATTGTCTATCGACCATCTGTCCAGTCAGAAGATCCTTTCCCTGAGACCAGG-ACTGGG-CCTGTGGTTACCAGGCAC-------------------TGCCCAGCA--GAGTCAGTGATG-- i mm10.chr5 I 2613 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 779215 729 - 1116856 I e canFam3.chr26 33107495 114 - 38964690 I a score=351430.000000 s hg38.chr12_KI270834v1_alt 3650 32 + 119498 a---aatatttatcaa-atgcacgaGAGCTCATAAT s panTro5.chr12 127289726 32 + 137163284 a---aatatttatcaa-atgcacgaGAGCTCATAAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125640780 32 + 135337776 a---aatatttatcaa-atgcacgaGAGCTCATAAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8153659 32 - 8369578 a---aatatttatcaa-atgcacgaGAGCTCATAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97801874 32 + 106955855 a---aatatttatcaa-atacatgaGCGCTCATAAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123860229 32 + 133663169 a---aatatttatcaa-atgcacgaGCACTCATAAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128168427 32 + 137757926 a---aatatttatcaa-atgcatgaGCACTCATAAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10573533 32 - 16319837 a---aatatttatcaa-atgcacgaGCACTCATAAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12195687 32 + 20526591 a---aatatttatcaa-atgCACAAGCACTCATAAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119168601 32 + 128539186 a---aatatttatcaa-atgcacgaGCACTCATAAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 481522 32 + 6255621 a---catatttatcaa-atgcatgaGCACTCATAAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4545273 32 - 8658521 a---aatatttatcaa-atgcacgaGCACTCATAAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114746937 32 + 124281992 a---aatatttattga-atgCACAAGCTCTCATAAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 392620 32 - 9212255 a---aatatttaccga-atgcatgaGCGCTCATAAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2806762 32 + 4466143 a---aatatttgttga-atgcatgaGCGCTCATAAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1503680 32 + 5364348 a---aatatttattga-atgcacgaGCGCTCATAAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4239004 32 + 7922563 a---aatgtttatcaa-atatgtgaGGGGTTGTAAT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124768469 36 + 151834684 GGTCAACACTTCCCAGTGTACTTGGGGCTCTGTGAT i mm10.chr5 C 0 C 0 s canFam3.chr26 33107609 32 - 38964690 A---AATATTTACTGA-ACACACGACAGCTCACAAC i canFam3.chr26 I 114 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e dasNov3.JH568189 779215 729 - 1116856 I a score=3203857.000000 s hg38.chr12_KI270834v1_alt 3682 294 + 119498 TTACATGAGGCTCTCAAAAAGGCTGAGTGATTCAACAGAGGTTGAGGTCATTGGTTGAGAGACTATGACAGAAGCCGTTCCCAATAA-TT-AAAAGTTGTGTATTTTATGAGAAGGCCGTGAAGACTAGTGTATAG---------------------------------TGTATACA-----GTATTTTGCAAGATGTTGTTTTC-CGG-TT--TAACTCTGGAGGCCAGTGGGAT--TTTGGAGAACTTTGGGAATATATTTCTAATGATGTCCTCATGTTGCAGAATTTCATTATAAGAAGTTTAC-AAAATGAGATTTGTCCTGTGATTTAAATGGGA s panTro5.chr12 127289758 294 + 137163284 TTACATGAGGCTCTCAAAAAGGCTGAGTGATTCAACAGAGGTTGAGGTCATTGGTCGAGAGACTATGACAGAAGCCGTTCCCAATAA-TT-AAAAGTTGTGTATTTTATGAGAAGGCTGTGAAGACTAGTGTATAG---------------------------------TGTATACA-----GTATTTTGCAAGATGTTGTTTTC-CGG-TT--TAACTCTGGAGGCCAGTGGGAT--TTTGGAGAACTTTGGGAATATATTTCTAATGATGTCCTCATGTTGCAGAATTTCATTATAAGAAGTTTAC-AAAATGAGATTTGTCCTGTGATTTAAATGGGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125640812 294 + 135337776 TTACATGAGGCTCTCAAAAAGGCTGAGTGATTCAACAGAGGTTGAGGTCATTGGTCGAGAGACTATGACAGAAGCCGTTCCCAATAA-TT-AAAAGTTGTGTATTTTATGAGAAGGCTGTGAAGACTAGTGTATAG---------------------------------TGTATACA-----GTATTTTGCAAGATGTTGTTTTC-CGG-TT--TAACTCTGGAGGCCAGTGGGAT--TTTGGAGAACTTTGGGAATATATTTCTAATGATGTCCTCATGTTGCAGAATTTCATTATAAGAAGTTTAC-AAAATGAGATTTGTCCTGTGATTTAAATGGGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8153691 293 - 8369578 TTACATGAGGCTCTCAAAAAGGCTGAGTGATTCAACAGAGGTTGAGGTCATTGGTCGAGAGAGTATGACAGAAGCCGTTCCCAATAA-TT-AAAAGTTGTGTATTTTATGAGAAGGCCGTGAAGACTGGTGTATAG---------------------------------TGTATACA-----GTATTTTGCAAGATGTTGTTTTC-CGG-TT--TAACTCTGGAGGCCAGTGGGAT--TTTGGAGAACTTTGGGAATATATTTCTAATGATGTCCTCATGTTGCAGCATTTCATTATAAGAAGTTTAC-AAAATGAGATTTGTCCTGTGATTTAAAT-GGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97801906 287 + 106955855 TGACATGAGGTTCACAAAAAGGCTGAGTGATTCAACAGAGGTTGAGGTCATTGGTCGAGAGACTATGACAGAAGCAGTTCCCAATAA-TT-AAAAGTTGTGTATTTTATGAGATGGCCATGAAGAC-------TAG---------------------------------TGTATATA-----GTATTTTGTGAGACATTGTTTTC-AGC-TT--TAACTCTGGAGGCCAGTGGGAT--TTTGGAGAACTTTGGGAATATATTTCCAGTGATGTCCTCATGTTTCAGAATTTCATTATAAGAAGTTTAC-AAAATGAGATTTGTCCTGTGATTTAAATGGGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123860261 285 + 133663169 TTACATGAGGCTC-CAAAAAGACTGAGTGATTCAACAGAGATTGAGGTCATTGGTCGAGAGACTATGACGGAAGCAGTTCCCAATAA-TT-AAAAGTTGTATATTTTATGAGATGGCTGTCAAGAC-------TAG---------------------------------TGTATATA-----GTATTTTGCGATACATTGTTTTC-AGG-TT--TAACTCTGGAGGCCACTGGGAT--TTTGGAGAACTTTGGGAATATATTTCCAGTGATGTCCTCATGTTTCAGAATTTCATTATAAGAA-TTTAC-AAAGTGAGATTTGTCCTGTGATTTAAATGGGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128168459 285 + 137757926 TTACATGAGGCTC-CAAAAAGACTGAGTGATTCAACAGAGATTGAGGTCATTGGTCGAGAGACTATGACGGAAGCAGTTCCCAATAA-TT-AAAAGTTGTATATTTTATGAGATGGCTGTCAAGAC-------TAG---------------------------------TGTATATA-----GTATTTTGCGATACATTGTTTTC-AGG-TT--TAACTCTGGAGGCCACTGGGAT--TTTGGAGAACTTTGGGAATATATTTCCAGTGATGTCCTCATGTTTCAGAATTTCATTATAAGAA-TTTAC-AAAGTGAGATTTGTCCTGTGATTTAAATGGGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10573565 285 - 16319837 TTACATGAGGCTC-CAAAAAGACTGAGTGATTCAACAGAGATTGAGGTCATTGGTCGAGAGACTATGACGGAAGCAGTTCCCAATAA-TT-AAAAGTTGTATATTTTATGAGATGGCTGTCAAGAC-------TAG---------------------------------TGTATATA-----GTATTTTGTGATACATTGTTTTC-AGG-TT--TAACTCTGGAGGCCACTGGGAT--TTTGGAGAACTTTGGGAATATATTTCCAGTGATGTCCTCATGTTTCAGAATTTCATTATAAGAA-TTTAC-AAAGTGAGATTTGTCCTGTGATTTAAATGGGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12195719 286 + 20526591 TTACATGAGGCTC-CAAAAAGACTGAGTGATTCAACAGAGATTGAGGTCATTGGTCGAGAGACTATGACGGAAGCAGTTCCCAATAA-TT-AAAAGTTGTATATTTTATGAGATGGCTGTCAAGAC-------TAG---------------------------------TGTATATA-----GTATTTTGCGATACATTGTCTTC-AGG-TT--TAACTCTGGAGGCCACTGGAAT--TTTGGAGAACTTTGGGAATATATTTCCAGTGATGTCCTCATGTTTCAGAATTTCATTATAAGAAGTTTAC-AAAGTGAGATTTGTCCTGTGATTTAAATAGGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119168633 287 + 128539186 TTACTTGAGGCTCTCAAAAAGACTGAGTGATTGAACAGAGACTGAGGTCATTGGTTGAGAGACTGTGACAGAAGCAGTTCCCAATAA-TT-AAAAGTTGTATATTTTATGAGATGGCTGTCAAGAC-------TAG---------------------------------TGTATATA-----GTGTTTTGTGATACATTGTTTTC-AGG-TT--TAACTCTGGAGGCCACTGGGAT--TTTGGAGAACTTTGGGAATATATTTCCAGTGATGTCCTCATGTTTCAGAATTTCATTATAAGAAGTTTAC-AAAGTGAGATTTGTCCTGTGATTTAAATGGGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 481554 286 + 6255621 TTACACGAGGCTC-CAAAAGGACTGAGTGATTCAACAGAGATTGAGGTCATTGGTCGAGAGACTATGACGGAAGCAGTTCCCAATAA-TT-AAAAGTTGTACAGTTTATGACATGGCCGTCAAGAC-------TAG---------------------------------TGTATATA-----GTATTTTGCGATACATTGTTTTC-AGG-TT--TAACTCTGGAGGCCACTGGGAT--TTTGGAGAACTTTGGGAATATATTTCCAGTGATGTCCCCATGTTTCAGAATTTCATTATAAGAAGTTTAC-AAAGTGAGATTTGTCCTGTGATTTAAATGGGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4545305 287 - 8658521 TTACATGAAGCTCTCAAAAAGACTGAGTGATTCAACAGAGATTGAGGTCATTGGTCGAGGGACTATGACAGAAGCAGTTCCCAGTAA-TT-AAAAGTTGTATATTTTATGAGATGGCTGTCAAGAC-------TAG---------------------------------TGTATATA-----GTGTTTTGCGATACATTGTTTTC-AGG-TT--TAACTCTGGAGGCCACTGGGAT--TTTGGAGAACTTTGGGAATATATTTCCAGTGATGTCCTCATGTTTCAGAATTTCATTATAAGAAGTTTAC-AAAGTGAGATTTGTCCTGTGATTTAAAGGGGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114746969 294 + 124281992 TTATGTGAAGCTCTCAAAAAAGCTGAGTGAGTCTCCGGAGGCTGAGCTCATTGGTTGAGAGACTGTGACAGAAGCAGTTTCCAAGAA-TT-AAAAGTTGCATGTTTTATGAGATGGCCGTGAAGAC-------TAGTATGTATA-------------------------TATATATA-----GCATTTTTCGAGACGTTGTTTTC-AGG-TT--TGACTCCGGAGGCCAGTGGGA---TTTAGAGAACTTTGGGAATGTATTTTCAGTGGTGCCCTCCTGTTTTAGAAATTCATTACAAGAAGTTTAC-AAAATGAGATTCATGCTGTGATTTAAATGGGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 392652 319 - 9212255 TTACATGAGGCTCTCAAAAAGGCCGAGTGAGTCTCCGGAGGCTGAGCTCATTGGTCGAGAGACTATGACAGAAGCAGTTTCCAAGAA-TT-AAAAGTTGTATGTTTTATAAGAAGGCCTTGAAGAC-------TCGTGTGTGTATATACATATATATACAGTATTTTGCTATATACA-----GTATTTTGCTAGATGTTGTTTTC-AAG-TT--TGACTCCAGAGGCCAGTGGGA---TTTGGCGAACTTTGGGAATATATTTTCAGTGATGCCCCCGTATTTTAGAATTTCATTACAAGAGGTTTAC-AGAATGAGATTCATGCTGTGATTTAAATGAGA i saiBol1.JH378194 C 0 I 609 s cebCap1.NW_016107484v1 2806794 299 + 4466143 TTACATGAGGCTTTCAAAAAGGCTGAGTGAGTCTCCGGAGGCTGAGCTCATTGGTTGAGAGACTATGACAGAAGCAGTTTCCAAGAA-TT-AAAAGTTGCACGTTTTATAAGATGGCCGTGCAGAC-------TAGCGTGTGTATATA---------------------TATATATA-----GTATTTTGCGAGATGTTGTTTTC-AGG-TT--TGACTCCGGAGGCCAGTGGGA---TTTGGAGAACTTTGGGAATATATTTTCAGTGATGCCCTCCTATTTTAGAATTTCATTACAAGAAGTTTACGAAAATGAGATTCATGCTGTGATTTAAATGGGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1503712 292 + 5364348 TTACATGAGGCTCTCAAAAAGGCTGAGTGAGTCTCCGGAGGCTGAGCTCATTGGTCGAGAGACTATGACAGAAGCAGTTGCCAGGAA-TT-AAAAGTTGCATGTTTTATGAGATGGCCGTGAAGAC-------TAGTGTATA---------------------------TATATATA-----GTATTTTGCGAGACGTTGTTTTC-AGG-TT--TGACTCTGGAGGCCAGTGGGA---TTTGGAGAACTTTGGGAATGTATTTTCAGTGATGCCCTCCTGTTTTAGAAATTCATTACAAGAAGTTTAC-AAAATGAGATTCGTGCCGTGATTTAATTGGGA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4239036 276 + 7922563 TTACACCAGGTTCTCAAAAATGCTGAGTGATCCAATAGAGATAGGGCTCACTGGTTGA--GACTATGACAGAAGCAGTTTCCAAAAA-TTAAAAAGCTGCGTATTTTATTCGATGACTATGAAGAA-------TAG---------------------------------TGCATGCT-----GAATCTTGCTGGATGTTGATTCC-TGG-GT--TTA--------GCCAGCGGGAC--TTTGGAAAATTTGGGGAATAAAATTCTAATGATGGCCTTATGTTTTAGAATTCTATT--AAGAAGTTTTC-ACAATGAGATTTGTCCTGTGACTTACATGAGA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124768505 223 + 151834684 TGACACCAGGTTCTCCCACAGGCAGAGAGGT-------------------------------------------CAGTTCCAAAAAA-CT-AGAGGCCACCCATTTTCTCAGCAG----------C-------TAA---------------------------------GACACACA----CGGGACCTGCCAGA---TGTTTCC-TGG-TTTATAACTCTAGTGGCAGGGAGGAGGATTTGGAAGAACTCAAGAGTATAATCCCGG-GCTGTCCC-----------ACGTCACTGT-GGAGGTTGTC-CCACAGGGCCTCTTCCTGTGACTGCAGGGGGA i mm10.chr5 C 0 C 0 s canFam3.chr26 33107641 261 - 38964690 TTACACCGGGGTCTCCAACAGGCTGAGTGAAGTGATAGAGGTCGAGATCTCTGGTCTA-----TGTGACAGAAGTAGGTTCCAAAAAGTT-AAAAGCTTCATATTCTCTTGGGTGGCCATGAAGAC-------TAG---------------------------------C-CATCTAAGAGCATATCTTGCTAGATATTGTTTCCTGGG-TT--TGGTTCTGGAAACCAATGGGAT--TTTGGAAAACTTTGGAAATGTAATTCCAATGATGTCCTCATTT----------------------------ATAATGGGATTTGCCTTGTGATTTAAGCAGGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 779944 286 - 1116856 TTATACCAGGTTCTCAAAAAAGATGAGTGATCTAATCAAGGTTAAAATCACTGGTCTAGAGACTATAATAGGAGCAGTTTCCAAAAA-TG-ACAAATTGTGTATTTTCTTAGACTGTTG-GATGAC-------CAG---------------------------------TCTGTATG-----ACATCATGCTAGATGTGGTTTCC-TGGACT--TAGGTCTGGCGGCCAGGGGGGT--TTTGGAAAACTTTGGAAATATAATTCCAATTATGTCCTCATATTTCATAATTCCATTACAGGAAGTTTTT-TCAATGGGGCTT-TCCTGTGATTTAAAAGGGA i dasNov3.JH568189 I 729 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I a score=56729.000000 s hg38.chr12_KI270834v1_alt 3976 4 + 119498 GTAA s panTro5.chr12 127290052 4 + 137163284 GTAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641106 4 + 135337776 GTAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8153984 4 - 8369578 GTAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802193 4 + 106955855 ATAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123860546 4 + 133663169 ATAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128168744 4 + 137757926 ATAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10573850 4 - 16319837 ATAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196005 4 + 20526591 ATAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119168920 4 + 128539186 ATAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 481840 4 + 6255621 ATAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4545592 4 - 8658521 ATAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114747263 4 + 124281992 ATAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 393580 4 - 9212255 GTAA i saiBol1.JH378194 I 609 C 0 s cebCap1.NW_016107484v1 2807093 4 + 4466143 ATAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1504004 4 + 5364348 ATAA i aotNan1.NW_018491581v1 C 0 I 114 s otoGar3.GL873618 4239312 4 + 7922563 ATAA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124768728 4 + 151834684 ACAA i mm10.chr5 C 0 C 0 s canFam3.chr26 33107902 4 - 38964690 ATAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 780230 4 - 1116856 GTAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I a score=136927.000000 s hg38.chr12_KI270834v1_alt 3980 14 + 119498 TTGAACTCCTCACT s panTro5.chr12 127290056 14 + 137163284 TTGAACTCCTTACT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641110 14 + 135337776 TTGAACTCCTTACT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8153988 14 - 8369578 TTGAACTCCTCACT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802197 13 + 106955855 TTGAACT-CTCACT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123860550 14 + 133663169 TCAAACTCCTCACT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128168748 14 + 137757926 TCAAACTCCTCACT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10573854 14 - 16319837 TCAAACTCCTCACT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196009 14 + 20526591 TTAAACTCCTCACT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119168924 14 + 128539186 TTGAACTCCTCACT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 481844 14 + 6255621 TCAAACTCCTCACT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4545596 14 - 8658521 TTGAACTCCTCATT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114747267 14 + 124281992 CTGCATTCCTCACT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 393584 14 - 9212255 CTGAATTCCTCACG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2807097 14 + 4466143 CTGAATTCCTCACT i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4239316 14 + 7922563 ATAAATTCATCACA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124768732 14 + 151834684 TTAATCTCATCTCT i mm10.chr5 C 0 I 1 s canFam3.chr26 33107906 14 - 38964690 TTAAATTCATCACT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 780234 14 - 1116856 TGAAATTCATCACT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I e aotNan1.NW_018491581v1 1504008 114 + 5364348 I a score=198194.000000 s hg38.chr12_KI270834v1_alt 3994 18 + 119498 AAATTCAGTAAGCATAAA s panTro5.chr12 127290070 18 + 137163284 AAATTCAGTAAGCATAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641124 18 + 135337776 AAATTCAGTAAGCATAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154002 18 - 8369578 AAATTCAGTAAACATAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802210 18 + 106955855 AAATTCAGTAAGCATAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123860564 18 + 133663169 AAACTCAGTAAGCATAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128168762 18 + 137757926 AAACTCAGTAAGCATAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10573868 18 - 16319837 AAACTCAGTAAGCATAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196023 18 + 20526591 AAACTCAGTAAGCATAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119168938 18 + 128539186 AAACTCAGTAAGCATAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 481858 18 + 6255621 AAACTCAGTAAGCATAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4545610 18 - 8658521 AAACTCAGTAAGCATAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114747281 18 + 124281992 AAATCCAGTAAGCTTAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 393598 18 - 9212255 AAATCCAGTAAGCTTAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2807111 18 + 4466143 AACTCCGGTAAGCTTAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1504122 18 + 5364348 aAATCCAGTAAGCTTAAA i aotNan1.NW_018491581v1 I 114 C 0 s otoGar3.GL873618 4239330 18 + 7922563 TCATTCATTCAGTGTAAA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124768747 15 + 151834684 CACTTGTCTGAGCGG--- i mm10.chr5 I 1 C 0 s canFam3.chr26 33107920 18 - 38964690 AAATCCAGGAAGCATGAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 780248 18 - 1116856 AAATTCAGTTGGCATAAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9419244 2303 - 31815103 I e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I a score=124903.000000 s hg38.chr12_KI270834v1_alt 4012 10 + 119498 GATTTGAATG s panTro5.chr12 127290088 10 + 137163284 GATTTGAATG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641142 10 + 135337776 GATTTGAATG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154020 9 - 8369578 GATTTGAAT- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802228 10 + 106955855 GATGTGAATG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123860582 10 + 133663169 GATTTGAATG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128168780 10 + 137757926 GATTTGAATG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10573886 10 - 16319837 GATTTGAATG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196041 10 + 20526591 GATTTGAATG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119168956 10 + 128539186 GATTTGAATG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 481876 10 + 6255621 GATTTGAATG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4545628 9 - 8658521 -ATTTGAATG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114747299 10 + 124281992 GATTTGAATG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 393616 10 - 9212255 GATTTGAATG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2807129 10 + 4466143 GATTTAAATG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1504140 10 + 5364348 GATTTGAATG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9421547 10 - 31815103 GATTTTAACG i micMur3.chr21 I 2303 C 0 s otoGar3.GL873618 4239348 10 + 7922563 GATTTTAATG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124768762 6 + 151834684 ----TGCGTG i mm10.chr5 C 0 C 0 s canFam3.chr26 33107938 10 - 38964690 GTTTTTATTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 780266 10 - 1116856 TATTTAATTG i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6671526 2284 - 9870158 I a score=3005146.000000 s hg38.chr12_KI270834v1_alt 4022 171 + 119498 -CTGATGTG------------CTTTCAGGCATTGGAAAGAACTTATGGAAAAAACGTCTGTCTTTTTTGAAATGACCGAAACGTTCACCTTGGAAAATATGTTTGCTATGGAACTGCACAAACACACAGATGTTCTCAA--TGAGATTGTCACA--GCAGCAATCAAGGAGG----TTGCCA--TTG-AGAAGGT s panTro5.chr12 127290098 171 + 137163284 -CTGATGTG------------CTTTCAGGCATTGGAAAGAACTTATGGAAAAAACGTCTGTCTTTTTTGAAATGACCGAAACGTTCACCTTGGAAAATATGTTTGCTATGGAACTGCACAAACACACAGATGTTCTCAA--TGAGATTGTCACA--GCAGCAATCAAGGAGG----TTGCCA--TTG-AGAAGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641152 171 + 135337776 -CTGATGTG------------CTTTCAGGCATTGGAAAGAACTTATGGAAAAAACGTCTGTCTTTTTTGAAATGACCGAAACGTTCACCTTGGAAAATATGTTTGCTATGGAACTGCACAAACACACAGATGTTCTCAA--TGAGATTGTCACA--GCAGCAATCAAGGAGG----TTGCCA--TTG-AGAAGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154029 170 - 8369578 -CTGATGTG------------CTTTCAGGCATTGGAAAGAACTTATGGAAAAAACGTCTGTCTTTTTTGAAATGACCGAAACGTTCACCTTGG-AAATATGTTTGCTATGGAACTGCACAAACACACAGATGTTCTCAA--TGAGATTGTCACA--GCAGCAATCAAGGAGG----TTGCCA--TTG-AGAAGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802238 171 + 106955855 -CTGACGTG------------CTTTCAGGCACTGGAAAGAACTTATGGAAAAAACATCTGTCCTTTTTGAAATGACCGAAACGTTCACCTTGGAAAATATGTTTGCTATGGAGCTGCACAAACACACGGATGTTCTCAA--TGAGATTGTCACA--GCAGCAATCAAGGAGG----TTGCCA--TTG-AGAAGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123860592 171 + 133663169 -CTGATGTG------------CTTTCAGGCATTGGAAAGAACTTATGGAAAAAACTTCTGTCTTTTTTGAAATGACCGAAACGTTCACCCTAGAAAATATGTTTGCTATGGAACTGCACAAACACACAGATGTTCTCAA--TGAGATTGTCACA--GCAGCAATCAAGGAGG----TTGCCA--TTG-AGAAGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128168790 171 + 137757926 -CTGATGTG------------TTTTCAGGCATTGGAAAGAACTTATGGAAAAAACATCTGTCTTTTTTGAAATGACCGAAACGTTCACCCTAGAAAATATGTTTGCTATGGAACTGCACAAACACACAGATGTTCTCAA--TGAGATTGTCACA--GCAGCAATCAAGGAGG----TTGCCA--TTG-AGAAGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10573896 171 - 16319837 -CTGATGTG------------CTTTCAGGCATTGGAAAGAACTTATGGAAAAAACGTCTGTCTTTTTTGAAATGACCGAAACGTTCACCCTAGAAAATATGTTTGCTATGGAACTGCACAAACACACAGATGTTCTCAA--TGAGATTGTCACA--GCAGCAATCAAGGAGG----TTGCCA--TTG-AGAAGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196051 171 + 20526591 -CTGATGTG------------CTTTCAGGCATTGGAAAGAACTTATGGAAAAAACGTCTGTCTTTTTTGAAATGACCGAAACGTTCACCCTAGAAAATATGTTTGCTATGGAACTGCACAAACATACGGATGTTCTCAA--TGAGATTGTCACA--GCAGCAATCAAGGAGG----TTGCCA--TTG-AGAAGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119168966 171 + 128539186 -CTGATGTG------------CTTTCAGGCATTGGAAAGAACTTATGGAAAAAACATCTGTCTTTTTTGAAATGACTGAAACGTTCACCCTGGAAAATATGTTTGCTATGGAACTGCACAAACACACGGATGTTCTCAA--TGAGATTGTCACA--GCAGCAATCAAGGAGG----TTGCCA--TTG-AGAAGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 481886 171 + 6255621 -CTGATGTG------------CTTTCAGGCATTGGAAAGAACTTATGGAAAAAACGTCTGTCTTTTTTGAAATGACCGAAACGTTCACCCTAGAAAATATGTTTGCTATGGAACTGCACAAACACACGGATGTTCTCAA--TGAGATTGTCACA--GCAGCAATCAAGGAGG----TTGCCA--TTG-AGAAGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4545637 171 - 8658521 -CTGATGTG------------CTTTCAGGCATTGGAAGGAACTTATGGAAAAAACGTCTGTCTTTTTTGAAATGACCGAAACGTTCACCCTGGAAAATATGTTTGCTATGGAACTGCACAAACACACGGATGTTCTCAA--TGAGATTGTCACA--GCAGCAATCAAGGAGG----TTGCCA--TTG-AGAAGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114747309 182 + 124281992 -CTGATGCA------------CTTTCAGGCATTGGAAAGAACTTATGGAGAAAACTTCTGTCTTTTTTGAAATGACCGAAACCTTCACCTTGGAAAATATGTTTGCTATGGAACTGCACAAACATACGGAAGTTCTCAAATGAAGATTGTCACCCGCCTGCGGTTCAAGGGGAGGTTCGCCCATTTGTAGAAAGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 393626 171 - 9212255 -CCGATGTG------------CTTTCAGGCATTGGAAAGAACTTATGGAGAAAACTTCTGTCTTTTTCGAAATGACCGAAACCTTCACCTTGGAAAACATGTTTGCTATGGAACTGCACAAGCATACGGAAGTTCTCAA--TGAGATTGTCACT--GCTGCGGTCAAGGAGG----TCGCCA--TTG-AGAAGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2807139 171 + 4466143 -CTTATGCT------------CTTTCAGGCATTGGAAAGAACTTATGGAGAAAACTTCTGTCTTTTTTGAAATGACCGAAACCTTCACCTTGGAAAATATGTTTGCTATGGAACTGCACAAACATACAGAAGTTCTCAA--TGAGATTGTCACT--GCTGCTGTCAAGGAGG----TCGCCA--TTG-AGAAGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1504150 171 + 5364348 -CTGATGCA------------CTTTCAGGCATTGGAAAGAGCTTATGGAGAAAACTTCTGTCTTTTTTGAAATGACCGAAACCTTCACCTTGGAAAATATGTTTGCCATGGAACTGCACAAACATACGGAAGTTCTCAA--TGAGATTGTCACC--GCTGCAGTCAAGGAGG----TCGCCA--TTG-AGAAGGT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9421557 171 - 31815103 -CTGATGCG------------CTTGCAGGCACTGGAAAGAGCTGATGGAGAAAACAGGCGTCTTTTTTGAAACGACCGACACGTTCACCTTGGAGAATATGTTTGCGATGGAACTGCACAAGCACACGGACGTTCTCAA--GGAGATTGTCACC--GCGGCTATCAAGGAGG----TCGCCA--TCG-AGAAGGT i micMur3.chr21 C 0 I 48 s proCoq1.NW_012154285v1 6673810 171 - 9870158 -CTGATGCA------------CTTTCAGGCACTGGAAAGAGCTCATGGAGAAAACGGGCGTCTTTTTTGAAACGACCGATACGTTCACCTTGGAAAATATGTTTGCGATGGAACTTCACAGACACACGGACGTTCTCAA--GGAGATTGTCACC--TCGGCTATCAAGGAGG----TCGCCA--TCG-AGAAGGT i proCoq1.NW_012154285v1 I 2284 C 0 s otoGar3.GL873618 4239358 171 + 7922563 -TGGATGCA------------CTTTCAGGCACTGGAATGAACTGATGGAAAAAACAGGTGTCTTTTTTGAAATGACTGACACATTCACCTTGGAAAATATGTTTGCTATGGAACTCCACAAACACTCAGATGTTCTGAA--TGAGATTGTTACA--GCAGCTACCAAGGAAG----TCGCCA--TTG-AGAGGGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124768768 183 + 151834684 -CTTATGGGTAACCCTCCTCTCTCTCAGACACTGGAAAGAACTCATGGAGAAAACGGGCGTGTTCTTCGAGATGACGGAGACCTTCACGCTTGAGAACATGTTCGCCATGGAGCTGCACAAGCACACGGAGGTGCTCAA--CGAGATCGTCACT--GCGGCCGTCAAGGAGG----TCGCCA--TCG-AGAAGGT i mm10.chr5 C 0 C 0 s canFam3.chr26 33107948 171 - 38964690 -TGGATGCA------------CTTTCAGGCATTGGAAAGAGCTTATGGAAAAAACAGGTGTATTTTTTGAGATGACAGAGACGTTCACCTTGGAAAACATGTTTGCTATGGAACTTCACAAACACACGGATGTTCTCAA--TGAGATTGTAATG--GCTGCTGTCAAAGAGA----TTGCCA--TTG-AGAAAGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 780276 171 - 1116856 TCTGCTCT-------------CTTACAGGCATTGGAAAGAACTTATGGAAAAAACTGGTGTATTTTTCGAAATGACTGAAACATTCACGTTGGAAAATATGTTTGCTATGGAACTTCACAAGCATACGGATGTTCTCAA--TGAGATTGTCACA--GCAGCTATCAAGGAGA----TCGCCA--TTG-AGAAGGT i dasNov3.JH568189 C 0 C 0 a score=36029.000000 s hg38.chr12_KI270834v1_alt 4193 3 + 119498 AAG s panTro5.chr12 127290269 3 + 137163284 AAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641323 3 + 135337776 AAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154199 3 - 8369578 AAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802409 3 + 106955855 AAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123860763 3 + 133663169 AAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128168961 3 + 137757926 AAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574067 3 - 16319837 AAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196222 3 + 20526591 AAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169137 3 + 128539186 AAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482057 3 + 6255621 AAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4545808 3 - 8658521 AAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114747491 3 + 124281992 TAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 393797 3 - 9212255 TAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2807310 3 + 4466143 TAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1504321 3 + 5364348 TAG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6673981 3 - 9870158 GAG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4239529 3 + 7922563 AAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124768951 3 + 151834684 GGG i mm10.chr5 C 0 I 243 s canFam3.chr26 33108119 3 - 38964690 AAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 780447 3 - 1116856 AAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9421728 48 - 31815103 I a score=38323.000000 s hg38.chr12_KI270834v1_alt 4196 3 + 119498 A-----CT s panTro5.chr12 127290272 3 + 137163284 A-----CT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641326 3 + 135337776 A-----CT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154202 3 - 8369578 A-----CT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802412 3 + 106955855 A-----CT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123860766 3 + 133663169 A-----CT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128168964 3 + 137757926 A-----CT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574070 3 - 16319837 A-----CT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196225 3 + 20526591 A-----CT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169140 3 + 128539186 A-----CT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482060 3 + 6255621 A-----CT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4545811 3 - 8658521 A-----CT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114747494 8 + 124281992 AGAACTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 393800 3 - 9212255 A-----CT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2807313 3 + 4466143 A-----CT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1504324 3 + 5364348 A-----CT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6673984 3 - 9870158 A-----CT i proCoq1.NW_012154285v1 C 0 I 1193 s otoGar3.GL873618 4239532 3 + 7922563 A-----CT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33108122 3 - 38964690 A-----CT i canFam3.chr26 C 0 I 4 s dasNov3.JH568189 780450 3 - 1116856 G-----CT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9421728 48 - 31815103 I e mm10.chr5 124768954 243 + 151834684 I a score=352587.000000 s hg38.chr12_KI270834v1_alt 4199 79 + 119498 TCAG--TTAAAAACAG---------GCTGGAGAAAA-----C----------------------------------------------------------------AGTC--------------------------------------------------------------------------------------TTTTTTT---------AATTCAAAGAGAAAata-----------gggaga--------------------actcatctatac----------ta------------aaaaa s panTro5.chr12 127290275 79 + 137163284 TCAG--TTAAAAACAG---------GCTGGAGAAAA-----C----------------------------------------------------------------AGTC--------------------------------------------------------------------------------------TTTTTTT---------AATTCAAAGAGAAAata-----------gggaga--------------------actcatctatac----------ta------------aaaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641329 79 + 135337776 TCAG--TTAAAAACAG---------GCTGGAGAAAA-----C----------------------------------------------------------------AGTC--------------------------------------------------------------------------------------TTTTTTT---------AATTCAAAGAGAAAata-----------gggaga--------------------actcatctatac----------ta------------aaaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154205 79 - 8369578 TCAG--TTAAAAACAG---------GCTGGAGAAAA-----C----------------------------------------------------------------AGTC--------------------------------------------------------------------------------------TTTTTTT---------AATTCAAAGAGAAAata-----------gggaga--------------------actcatctatac----------ta------------aaaaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802415 78 + 106955855 TCAG--TTAAAAACGG---------GCTGGAGAAAA-----C----------------------------------------------------------------AGTC---------------------------------------------------------------------------------------TTTTTT---------AATTTAAAGAGAAAata-----------gggaga--------------------cctcatctctac----------ca------------aaaaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123860769 80 + 133663169 TCAG--TTAAAAACAG---------GCTGGAGAAAA-----CA--------------------------------------------------------------GAGTC--------------------------------------------------------------------------------------TTTTTTT---------AATTCAAAAAGAAAACA-----------GGgaga--------------------cctcatctctac----------ta------------aaaa- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128168967 80 + 137757926 TCAG--TTAAAAACAG---------GCTGGAGAAAA-----CA--------------------------------------------------------------GAGTC--------------------------------------------------------------------------------------TTTTTTT---------AATTCAAAAAGAAAACA-----------GGgaga--------------------cctcatctctac----------ta------------aaaa- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574073 80 - 16319837 TCAG--TTAAAAACAG---------GCTGGAGAAAA-----CA--------------------------------------------------------------GAGTC--------------------------------------------------------------------------------------TTTTTTT---------AATTCAAAAAGAAAACA-----------GGgaga--------------------cctcatctctac----------ta------------aaaa- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196228 80 + 20526591 TCAG--TTAAAAACAG---------GCTGGAGAAAA-----CA--------------------------------------------------------------GAGTC--------------------------------------------------------------------------------------TTTTTTT---------AATTCAAAAAGAAAACA-----------GGgaga--------------------cctcatctctac----------ta------------aaaa- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169143 80 + 128539186 TCAG--TTAAAAACAG---------GCTGGAAAAAA-----CA--------------------------------------------------------------GAGTC--------------------------------------------------------------------------------------TTTTTTT---------AATTCAAAAAGAAAACA-----------GGgaga--------------------cctcatctctac----------ta------------aaaa- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482063 80 + 6255621 TCAG--TTAAAAACAG---------GCTGGAGAAAA-----CA--------------------------------------------------------------GAGTC--------------------------------------------------------------------------------------TTTTTTT---------AATTCAAAAAGAAAACA-----------GGgaga--------------------cctcatctctac----------ta------------aaaa- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4545814 80 - 8658521 TCAG--TTAAAAACAG---------GCTGGAGAAAA-----CA--------------------------------------------------------------GAGTC--------------------------------------------------------------------------------------TTCTTTT---------AGTTCAAAAAGAAAata-----------gggaga--------------------cctcatctctac----------ta------------aaaa- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114747502 120 + 124281992 TCAG--TTTTAAAAAACCCAGGTTTTTTTTAAAAAAAACCGA----------------------------------------------------------------AACC--------------------------------------------------------------------------------------CTTTTTCTTTTT---AAATTCAAAAGGAAAAAA-----------AAAATAAGCGGAGGAACCCTTCCTTTCCTCCTCCCCtt---------aaa------------aaaaa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 393803 91 - 9212255 TCAG--TTAAAAAAAG---------TTTTTAAAAAAA----C----------------------------------------------------------------AACC--------------------------------------------------------------------------------------TTTTTTTT--------AAATCAAAGAGAAAATA-----------GCGAGA--------------------CCTCATCTCTCCaaaaaaaaaaaa------------aaaaa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2807316 76 + 4466143 TCAG--TTAAAAGCAG---------TTTTTAAAGAA-----C----------------------------------------------------------------AACC--------------------------------------------------------------------------------------TTTTTTT---------AAATCAAAGAGAAAata-----------gcgaga--------------------cctcatctctcc-------------------------taaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1504327 77 + 5364348 TCAG--TTAAAAACAG---------GTTTTAAA--------A----------------------------------------------------------------AACC--------------------------------------------------------------------------------------TTTTTTTT--------AAATCAAAGAGAAAata-----------gcgaga--------------------ccttatctctcc----------ta------------aaaaa i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4239535 104 + 7922563 ATAG--TTAGAAGAAG----------------AAAA-----C----------------------------------------------------------------attt--------------------------------------------------------------------------------------ttttattttattaaaaaatttaaaaattatttaatttttttaaGAGAAAA--------------------CATTTGCTCTAC----------TACTTGTTGCATTTAAAGA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33108129 230 - 38964690 TTAGATATAAAAACAG---------TTTAGgggcag-----ccctggtggcgcagcggtttggcgccgcctgcagcccggggcgtgatcctggagacctgggattgagtcccacatcaggcttcctgcatggagcctgcttctccctctgctcgtgtctctgcctctctctcgctctctatgaatacataaataaatcttttt---------aaaaaaaaATAAAAATA-----------AATAAA--------------------AACAGTTTAGAA----------AA------------AAGA- i canFam3.chr26 I 4 C 0 s dasNov3.JH568189 780453 50 - 1116856 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTAGT---------TATTGTAAAAGAGTCTA-----------GAGAAA--------------------TGT-ATTTTTAT----------TA------------AAAAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9421728 48 - 31815103 I e mm10.chr5 124768954 243 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I a score=3180.000000 s hg38.chr12_KI270834v1_alt 4278 6 + 119498 aaaaa-a s panTro5.chr12 127290354 6 + 137163284 gaaaa-a i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641408 5 + 135337776 g-aaa-a i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154284 5 - 8369578 a-aaa-a i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802493 4 + 106955855 --cag-a i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123860849 4 + 133663169 --aaa-c i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169047 4 + 137757926 --aaa-c i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574153 4 - 16319837 --aaa-c i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196308 4 + 20526591 --aaa-c i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169223 3 + 128539186 --aaa-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482143 4 + 6255621 --aaa-c i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4545894 5 - 8658521 --aaaaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114747622 5 + 124281992 a-aaa-a i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 393894 5 - 9212255 a-aaa-a i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2807392 5 + 4466143 a-aaa-a i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1504404 5 + 5364348 a-aaa-a i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4239639 5 + 7922563 A-TAA-A i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33108359 3 - 38964690 --GAA-- i canFam3.chr26 C 0 I 280 e micMur3.chr21 9421728 48 - 31815103 I e mm10.chr5 124768954 243 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 780503 0 - 1116856 C a score=59928.000000 s hg38.chr12_KI270834v1_alt 4284 5 + 119498 aaatt s panTro5.chr12 127290360 5 + 137163284 aaatt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641413 5 + 135337776 aaatt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154289 5 - 8369578 aaatt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802497 5 + 106955855 aaatt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123860853 5 + 133663169 aaatt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169051 5 + 137757926 aaatt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574157 5 - 16319837 aaatt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196312 5 + 20526591 aaatt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169226 5 + 128539186 aaatt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482147 5 + 6255621 aaatt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4545899 5 - 8658521 aaatt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114747627 5 + 124281992 aaatt i calJac3.chr9 C 0 I 1651 s saiBol1.JH378194 393899 5 - 9212255 aaatt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2807397 5 + 4466143 aaatt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1504409 5 + 5364348 aaatt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4239644 5 + 7922563 GAATT i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9421728 48 - 31815103 I e mm10.chr5 124768954 243 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 780503 0 - 1116856 C e canFam3.chr26 33108362 280 - 38964690 I a score=1347384.000000 s hg38.chr12_KI270834v1_alt 4289 167 + 119498 agctgagcgtggtggtatgccattactcccagcttcttgggaggctgaggtgggaggatcacttgaacctggaaggtggaggctgcagtgaactgtgatcgcacc-atggcactccagcctgggtgacagggtgagac----cttgtctcaaagaagaa----aaacaaacaaaaa s panTro5.chr12 127290365 167 + 137163284 agctgagcgtggtggcatgcctttagtcccagcttcttgggaggctgaggtgggaggatcacttgaacctggaaggtggaggctgcagtgaactgtgatcgcacc-atggcactccagcctgggtgacggggtgagac----cttgtctcaaagaagaa----aaacaaacaaaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641418 167 + 135337776 agctgagcgtggtggcatgcctttagtcccagcttcttgggaggctgaggtgggaggatcacttgaacctggaaggtggaggctgcagtgaactgtgatcgcacc-atggcactccagcctgggtgacggggtgagac----cttgtctcaaagaagaa----aaacaaacaaaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154294 166 - 8369578 agctgagcgtggtggcttgcctttagtcccagcttcttgggaggctgaggtgggaggatcacttgaacctggaaggtggaggcggcagtgaactgtgatcgcacc-atggcactccagcctgggtgacagggtgagac----cttgtctcaaagaagaa----aaacaaac-aaaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802502 167 + 106955855 acctgggcgtggtggcatgcctttagtcccagcttcttgggaggctgaggtgggaggatcacttgaacctggaaggtgaaggccacagtgaactgtgatcgcacc-atggcactccagcctgtgtgacagggtgagtc----cctgtctcaaagaagaa----aaacaaacaaaaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123860858 168 + 133663169 agctgggcgtggtggcatgcctttagtcccaacttcttgggaggctgaggtgggaggatcacttgaacctggaaattggaggctgcagtgacctgtgatcgcacc-atggcactccagcctgggtgacagggtgagacattttctgtctc---aaagaa----aaacaaacaaaaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169056 168 + 137757926 agctgggcgtggtggcatgcctttagtcccaacttcttgggaggctgaggtgggaggatcacttgaacctggaaattggaggctgcagtgacctgtgatcgcacc-atggcactccagcctgggtgacagggtgagacattttctgtctc---gaagaa----aaacaaacaaaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574162 168 - 16319837 agctgggcgtggtggcatgcctttagttccaacttcttgggaggctgaggtgggaggatcacttgaacctggaaattggaggctgcagtgacctgtgatcgcacc-atggcactccagcctgggtgacagggtgagacattttctgtctc---gaagaa----aaacaaacaaaaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196317 168 + 20526591 agctgggcgtggtggcatgcctttagtcccaacttcttgggaggctgaggtgggaggatcacttgaacctggaaagtggaggctgcagtgacctgtgatcacacc-atggcactccagcctgggtgacagggtgagacattttctgtctt---gaagaa----aaacaaacaaaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169231 171 + 128539186 agctgggcgtggtggcatgcctttagtcccaacttcttgggagactgaggtgggaggatcacttgaacctggaaggtggaggctgcagtgacctgtgatcgcacc-atggcactccagcctgggtgacagggtgagacattttctgtctcaaagaagaa----aaacaaacagaaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482152 168 + 6255621 agctgggcgtggtggcatgcctttagtcccaacttcttgggaggctgaggtgggaggatcacttgaacctggaaagtggaggctgcagtgacctgtgatcgcacc-atggcactccagcctgggtgacagggtgagacattttctgtctc---gaagaa----aaacaaacaaaaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4545904 171 - 8658521 agctgggcgtggtggcatgcctttagtcctaacttcttgggaggctgaggtgggaggatcacttgaacctggaaggtggaggctgcagtgacctgtgatcgcacc-atggcactccagcctgggtgacagggtgagacattttctgtctcaaagaagaa----aaacaaacagata i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 393904 170 - 9212255 agctgtacgtgatggcatgcctttagtcccagctacttgggaggctgaagtgggaggatcacttgaacctggaaggtggggcctgcagtgagctgtgattgtgcc-attgcacaccagctggggtgacagagtgaggc----cc-gtctcaaagaacaaaagcaaacaaacaaaaa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2807402 170 + 4466143 agctgtatgtagtggcatgcctttagtcccagctacttgggaggctgaagtgggaggatcacttgaacctggaaggtgggggctgcagtga-ccatgatcgcgcc-attgcactccagccggggtaacagagtgaggc----cctgtctcaaagaacaaaagcaaacaaacaaaaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1504414 171 + 5364348 agctgtacgtggtggcatgcctttagtcccagctacttgggaggctgaagtgggaggatcacttgaacctggaaggtgggggctgcagtgaaccgtgatcgaacc-attgcactccagccggggtgacagggtgaggc----cctgtctcaaagaacaaaagcaaacaaacaaaaa i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4239649 109 + 7922563 -------------------------------ATCTGTTGTAGAGAGAAGGAAGGAGGG----------ATGGAGGTGGGGTGTTGGTGTGCGC------CACACCTTTTGGAGGCAAGACATGATTGTAAGA-GGGAC----TTTACCT-----AACAA----ATGCAAT------ i otoGar3.GL873618 C 0 I 1 e micMur3.chr21 9421728 48 - 31815103 I e mm10.chr5 124768954 243 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 780503 0 - 1116856 C e canFam3.chr26 33108362 280 - 38964690 I e calJac3.chr9 114747632 1651 + 124281992 I a score=50607.000000 s hg38.chr12_KI270834v1_alt 4456 4 + 119498 agag s panTro5.chr12 127290532 4 + 137163284 agag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641585 4 + 135337776 agag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154460 4 - 8369578 agag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802669 4 + 106955855 agag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123861026 4 + 133663169 agag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169224 4 + 137757926 agag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574330 4 - 16319837 agag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196485 4 + 20526591 agag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169402 4 + 128539186 agag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482320 4 + 6255621 agag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4546075 4 - 8658521 agag i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 394074 4 - 9212255 aaaG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2807572 4 + 4466143 aGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1504585 4 + 5364348 aGAG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9421776 4 - 31815103 AGAG i micMur3.chr21 I 48 C 0 s otoGar3.GL873618 4239759 4 + 7922563 AGTG i otoGar3.GL873618 I 1 C 0 s canFam3.chr26 33108642 4 - 38964690 AAAG i canFam3.chr26 I 280 C 0 e mm10.chr5 124768954 243 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 780503 0 - 1116856 C e calJac3.chr9 114747632 1651 + 124281992 I a score=535149.000000 s hg38.chr12_KI270834v1_alt 4460 55 + 119498 aaaaCATATTTGCTCTAGTACCTGCTGT---------------ACTTCAGTAATAAAGAATTATTTGTTG s panTro5.chr12 127290536 55 + 137163284 aaaaTATATTTGCTCTAGTACCTGATGT---------------ACTTCAGTAATAAAGAATTATTTGTTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641589 55 + 135337776 aaaaCATATTTGCTCTAGTACCTGATGT---------------ACTTCAGTAATAAAGAATTATTTGTTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154464 55 - 8369578 aaaaCATATTTGCTTTAGTACCTGCTGT---------------ACTTCAGTAATAAAGAATTATTTGTTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802673 55 + 106955855 aaaaCGTATTTGCTCTAGTACCTGCTGT---------------GCTTCAGTAATAAAGAATTATTTGTTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123861030 55 + 133663169 aaaaCATATTTGCTCTAGTACCTGCTGT---------------ACTTCAGTAATAAAGAATTATTTATTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169228 55 + 137757926 aaaaCATATTTGCTCTAGTACCTGCTGT---------------ACTTCAGTAATAAAGAATTATTTATTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574334 55 - 16319837 aaaaCATATTTGCTCTAGTACCTGCTGT---------------ACTTCAGTAATAAAGAATTATTTATTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196489 55 + 20526591 aaaaCATATTTGCTCTAGTACCTGCTGT---------------ACTTCAGTAATAAAGAATTATTTATTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169406 52 + 128539186 aaaaCATATTTGCTCTAGTACCTGCTGT---------------ACTTCAGTAATAAAGAATTA--TATT- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482324 55 + 6255621 aaaaCATATTTGCTCTAGTACCTGCTGT---------------ACTTCAGTAATAAAGAATTATTTATTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4546079 52 - 8658521 aaaaCATATTTGCTTTAGTACCTGCTGT---------------ACTTCAGTAATAAAGAATTA--TATT- i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 394078 55 - 9212255 AATGCGTGTTTACTCTAGTGCTTGATAT---------------ACTTCCGTAATAAAGACGTATTTGTTG i saiBol1.JH378194 C 0 I 224 s cebCap1.NW_016107484v1 2807576 55 + 4466143 AACACATGTTTACTCTAATACATGATGT---------------ACTTCCGTAATAAAGAAGTATTTGTTG i cebCap1.NW_016107484v1 C 0 I 224 s aotNan1.NW_018491581v1 1504589 55 + 5364348 AACACATGTTTACTCTAGTACTTGACGT---------------TCTTCCGTAATAAAGAAGTATTTGTTG i aotNan1.NW_018491581v1 C 0 I 224 s micMur3.chr21 9421780 55 - 31815103 AAAACCTATTTGCCCTCGTACCTGTTGC---------------ATTTGAGGGATAAAGAATTATGTGTTG i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4239763 67 + 7922563 AAACCTGGTTT---CTTATACCCTCAACGAATCCCCAACAGtaaattaaaaaaaaaataattatCTGTTG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33108646 55 - 38964690 AGAAAATGTTTGTTTTGGTACTCATTGT---------------ATTCAAGTAATAAAGAATTGTTTGCTC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 780503 45 - 1116856 GAAATATGTTTTCTCTAGTACCTGCTGT---------------GTTTGAGTAAT---GAATTG------- i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124768954 243 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e calJac3.chr9 114747632 1651 + 124281992 I a score=25662.000000 s hg38.chr12_KI270834v1_alt 4515 3 + 119498 TAG s panTro5.chr12 127290591 3 + 137163284 TAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641644 3 + 135337776 TAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154519 3 - 8369578 TAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802728 3 + 106955855 TAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123861085 3 + 133663169 TAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169283 3 + 137757926 TAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574389 3 - 16319837 TAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196544 3 + 20526591 TAG i cerAty1.NW_012001186v1 C 0 C 0 s manLeu1.NW_012103587v1 482379 3 + 6255621 TAG i manLeu1.NW_012103587v1 C 0 C 0 s micMur3.chr21 9421835 3 - 31815103 TAG i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4239830 3 + 7922563 TAG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33108701 3 - 38964690 TAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 780548 3 - 1116856 TAG i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124768954 243 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e aotNan1.NW_018491581v1 1504644 224 + 5364348 I e cebCap1.NW_016107484v1 2807631 224 + 4466143 I e saiBol1.JH378194 394133 224 - 9212255 I e calJac3.chr9 114747632 1651 + 124281992 I e colAng1.NW_012116043v1 4546131 0 - 8658521 C e chlSab2.chr11 119169458 0 + 128539186 C a score=120272.000000 s hg38.chr12_KI270834v1_alt 4518 13 + 119498 AAATAGAATTTCC s panTro5.chr12 127290594 13 + 137163284 AAATAGAATTTCT i panTro5.chr12 C 0 I 3 s panPan2.chr12 125641647 13 + 135337776 AAATAGAATTTCT i panPan2.chr12 C 0 I 3 s gorGor5.CYUI01015152v1 8154522 13 - 8369578 AAATAGAATTTCT i gorGor5.CYUI01015152v1 C 0 I 3 s nomLeu3.chr10 97802731 13 + 106955855 AAATAGAATTTCT i nomLeu3.chr10 C 0 I 3 s rheMac8.chr11 123861088 13 + 133663169 AAATATAATTTTT i rheMac8.chr11 C 0 I 3 s macFas5.chr11 128169286 13 + 137757926 AAATATAATTTTT i macFas5.chr11 C 0 I 3 s macNem1.NW_012010578v1 10574392 13 - 16319837 AAATATAATTTTT i macNem1.NW_012010578v1 C 0 I 3 s cerAty1.NW_012001186v1 12196547 13 + 20526591 AAATGTAATTTTT i cerAty1.NW_012001186v1 C 0 I 3 s chlSab2.chr11 119169458 13 + 128539186 AAATATAATTTCT i chlSab2.chr11 C 0 I 3 s manLeu1.NW_012103587v1 482382 13 + 6255621 AAATATAATTTTT i manLeu1.NW_012103587v1 C 0 I 3 s colAng1.NW_012116043v1 4546131 13 - 8658521 AAATACAATTTCT i colAng1.NW_012116043v1 C 0 I 3 s micMur3.chr21 9421838 13 - 31815103 AAACAGGATTTCC i micMur3.chr21 C 0 I 133 s otoGar3.GL873618 4239833 13 + 7922563 AAATAGAATTTCT i otoGar3.GL873618 C 0 I 2 s mm10.chr5 124769197 13 + 151834684 AAATAGAACCTCT i mm10.chr5 I 243 I 3 s canFam3.chr26 33108704 13 - 38964690 AAATAGGATTTCT i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 780551 13 - 1116856 AAATAGaatttta i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e aotNan1.NW_018491581v1 1504644 224 + 5364348 I e cebCap1.NW_016107484v1 2807631 224 + 4466143 I e saiBol1.JH378194 394133 224 - 9212255 I e calJac3.chr9 114747632 1651 + 124281992 I a score=44077.000000 s hg38.chr12_KI270834v1_alt 4531 6 + 119498 TTAATT- s panTro5.chr12 127290610 6 + 137163284 TTAATT- i panTro5.chr12 I 3 C 0 s panPan2.chr12 125641663 6 + 135337776 TTAATT- i panPan2.chr12 I 3 C 0 s gorGor5.CYUI01015152v1 8154538 6 - 8369578 TTAATT- i gorGor5.CYUI01015152v1 I 3 C 0 s nomLeu3.chr10 97802747 6 + 106955855 TTAATT- i nomLeu3.chr10 I 3 C 0 s rheMac8.chr11 123861104 6 + 133663169 TTAATT- i rheMac8.chr11 I 3 C 0 s macFas5.chr11 128169302 6 + 137757926 TTAATT- i macFas5.chr11 I 3 C 0 s macNem1.NW_012010578v1 10574408 6 - 16319837 TTAATT- i macNem1.NW_012010578v1 I 3 C 0 s cerAty1.NW_012001186v1 12196563 6 + 20526591 TTAATT- i cerAty1.NW_012001186v1 I 3 C 0 s chlSab2.chr11 119169474 6 + 128539186 TTAATT- i chlSab2.chr11 I 3 C 0 s manLeu1.NW_012103587v1 482398 6 + 6255621 TTAATT- i manLeu1.NW_012103587v1 I 3 C 0 s colAng1.NW_012116043v1 4546147 6 - 8658521 TTAATT- i colAng1.NW_012116043v1 I 3 C 0 s otoGar3.GL873618 4239848 6 + 7922563 CCAGTT- i otoGar3.GL873618 I 2 C 0 s mm10.chr5 124769213 6 + 151834684 TTAGTT- i mm10.chr5 I 3 C 0 s canFam3.chr26 33108719 6 - 38964690 TTGGTT- i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 780564 6 - 1116856 -aaattt i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e aotNan1.NW_018491581v1 1504644 224 + 5364348 I e cebCap1.NW_016107484v1 2807631 224 + 4466143 I e saiBol1.JH378194 394133 224 - 9212255 I e calJac3.chr9 114747632 1651 + 124281992 I a score=55176.000000 s hg38.chr12_KI270834v1_alt 4537 5 + 119498 AAATT s panTro5.chr12 127290616 5 + 137163284 AAATT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641669 5 + 135337776 AAATT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154544 5 - 8369578 AAATT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802753 5 + 106955855 AAATT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123861110 5 + 133663169 AAATT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169308 5 + 137757926 AAATT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574414 5 - 16319837 AAATT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196569 5 + 20526591 AAATT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169480 5 + 128539186 AAATT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482404 5 + 6255621 AAATT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4546153 5 - 8658521 AAATT i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 394357 5 - 9212255 aaaTT i saiBol1.JH378194 I 224 I 1 s otoGar3.GL873618 4239854 5 + 7922563 AAATT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124769219 5 + 151834684 TACTT i mm10.chr5 C 0 C 0 s canFam3.chr26 33108725 5 - 38964690 AAATT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 780570 5 - 1116856 aaatt i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e aotNan1.NW_018491581v1 1504644 224 + 5364348 I e cebCap1.NW_016107484v1 2807631 224 + 4466143 I e calJac3.chr9 114747632 1651 + 124281992 I a score=407582.000000 s hg38.chr12_KI270834v1_alt 4542 54 + 119498 TTTTGTTGTTCCCAATTGTAGTTTCATTTTCCATTGTTTAAAAAAATTTTTTCT s panTro5.chr12 127290621 54 + 137163284 TTTTGTTGTTCCCAATTGTAGTTTCATTTTCCATTGTTTAAAAAatttttttct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641674 54 + 135337776 TTTTGTTGTTCCCAATTGTAGTTTCATTTTCCATTGTTTAAAAAatttttttct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154549 54 - 8369578 TTTTGTTGTTCCCAATTGTAGTTTCATTTTCCATTGTTTAAAAAAattttttct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802758 52 + 106955855 TTTTATTGTTCCTAATTGTAGTTTCATTTT-CATTGTTT-AAAAAtttttttct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123861115 52 + 133663169 TTTTATTGTTCCCAATTGTAGTTTCATTTTCCATTGTTTAAAAAAatttttc-- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169313 52 + 137757926 TTTTATTGTTCCCAATTGTAGTTTCATTTTCCATTGTTTAAAAAAatttttc-- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574419 52 - 16319837 TTTTATTGCTCCCAATTGTAGTTTCATTTTCCATTGTTTAAAAAAatttttc-- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196574 52 + 20526591 TTTTATTTTTCCCAATTGTAGTTTCATTTTCCATTGTTTAAAAAAatttttc-- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169485 52 + 128539186 TTTTATTGTTCCCAATTGTAGTTTCATTTTCCATTGTTTAAAAAAatttttc-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482409 52 + 6255621 TTTTATTGTTCCCAATTGTAGTTTCATTTTCCATTGTTTAAAAAAatttttc-- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4546158 52 - 8658521 TTTTATTGTTCCCAATTGTAGTTTCATTTTCCATTGTTTAAAAAAATTtttc-- i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 394363 52 - 9212255 TTTCATTGTTCCTAATTATAGTTTCATTTTCCATTGtttaaaacattttatt-- i saiBol1.JH378194 I 1 I 2 s cebCap1.NW_016107484v1 2807855 52 + 4466143 TTTTATTGTTCCTCATTATAGTTTCGTTTTCCATTGTTTAAAACATTTTATT-- i cebCap1.NW_016107484v1 I 224 I 2 s aotNan1.NW_018491581v1 1504868 51 + 5364348 TTTTATTGTTCCTAATTATAGTTTCATTTTCCATTGTTTAAAACa-tttatt-- i aotNan1.NW_018491581v1 I 224 I 2 s otoGar3.GL873618 4239859 26 + 7922563 CTTTATTGCTTCTAA---TAGTTTCATTT------------------------- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124769224 30 + 151834684 TTTTGGCATCCCTGATTATAGTTTCATATT------------------------ i mm10.chr5 C 0 C 0 s canFam3.chr26 33108730 22 - 38964690 ---TTTTATTCTAAATTATGGTTTC----------------------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 780575 24 - 1116856 ------tcattttaatGATAGTTTCAtttt------------------------ i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e calJac3.chr9 114747632 1651 + 124281992 I a score=1110299.000000 s hg38.chr12_KI270834v1_alt 4596 121 + 119498 TATTGTTTCTTATTTATTTATTT----TGCCATTGA--TTTTTAAATAGAT-----GTAATGGATGTTC-ATGGTagaaaattg-aaaaaaa----------at--------tcataatcccactacctgaaaataattatta---actttttag s panTro5.chr12 127290675 125 + 137163284 tattgtttcttatttatttatttatttTGCCATTGA--TTTTTAAATAGAT-----GTAATGGATGTTC-ATGGTagaaaattg-aaaaaaa----------at--------tcataatcccactacctgaaaataattatta---actttttag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641728 125 + 135337776 tattgtttcttatttatttatttgtttTGCCATTGA--TTTTTAAATAGAT-----GTAATGGATGTTC-ATGGTagaaaattg-aaaaaaa----------at--------tcataatcccactacctgaaaataattatta---actttttag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154603 125 - 8369578 tattgtttcttatttatttatttatttTGCCATTGA--TTTTTAAATAGAT-----GTAATGGATGTTC-ATGGTagaaaattg-aaaaaaa----------at--------tcataatcccactacctgaaaataattatta---actttttag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802810 121 + 106955855 tattttttcttatttatttattt----tGCCATTGA--TTTTTAAATAGAA-----GTAATGAATGTTC-ATGGTagaaaattg-aaaaaaa----------at--------tcataatcccaccacctgaaaataattatta---actttttag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123861167 115 + 133663169 ---------ttatttatttatttatttTGCCATTGA--TTTTTAAATAGAA-----GTAATGGATGTTG-ATGGTagaaaattg--aaaaaa----------at--------tcataatcccaccacctgaaaataattatta---actttttag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169365 115 + 137757926 ---------ttatttatttatttatttTGCCATTGA--TTTTTAAATAGAA-----GTAATGGATGTTG-ATGGTagaaaattg--aaaaaa----------at--------tcataatcccaccacctgaaaataattatta---actttttag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574471 115 - 16319837 ---------ttatttatttatttatttTGCCATTGA--TTTTTAAATAGAA-----GTAATGGATGTTG-ATGGTagaaaattg--aaaaaa----------at--------tcataatcccaccacctgaaaataattatta---actttttag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196626 115 + 20526591 -----ttatttatttatttatttatttTGCCATTGA--TTTTTAAATAGAA-----GTAATGGATGTTG-ATGGTAGAAAATTG--AAAAAA----------AT--------TCAT----TTCCCACCTGAAAATAATTATTA---ACTTTTTAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169537 119 + 128539186 -----ttatttatttatttatttatttTGCCATTGA--TTTTTAAATAGAA-----GTAATAGATGTTG-ATGGTagaaaattg--aaaaaa----------at--------tcataatcccaccacctgaaaataattatta---actttttag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482461 119 + 6255621 -----ttatttatttatttatttatttTGCCATTGA--TTTTTAAATAGAA-----GTAATGGATGTTG-ATGGTagaaaattg--aaaaaa----------at--------tcataatcccaccacctgaaaataattatta---actttttag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4546210 116 - 8658521 --------tttttttatttatttatttTGCCATTGA--TTTTTAAATAGAA-----GTAATAGATGTTG-ATGGTagaaaattg--aaaaaa----------at--------tcataatcccaccacttgaaaataattatta---actttttag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114749283 122 + 124281992 ----TATTTTTTCTTATGTA-TTATTTTGCCATTGATTTTTTTAGATAGCA-----GTAATAGATGTTC-ATGTTAGaaaatta-aaaaaat----------at--------atataatCTCACCACCTGAAAATAATTATTA---ACTTTTTAG i calJac3.chr9 I 1651 C 0 s saiBol1.JH378194 394417 121 - 9212255 ------ttttttcttatatatttattttGCCATTGATTTTTTTAGATAGCA-----GTAATAGATGTTC-ATGTTagaaaatta-gaaaaaa----------aa--------ttataatctcaccacctcaaaataattatta---actttttag i saiBol1.JH378194 I 2 I 918 s cebCap1.NW_016107484v1 2807909 128 + 4466143 ----TATTTTTTCTTATATATTTATTTTGCCATTGATTTTTTTAGATAGCAGTACTGTAATAGATGTTC-ATGTTAGAAAATTT-AAAAAAA----------AT--------TTATGATCTCACCCCCTGAAAATAATTATTA---ACTTTTTAA i cebCap1.NW_016107484v1 I 2 C 0 s aotNan1.NW_018491581v1 1504921 122 + 5364348 ----tattttttcttatgtatttattttgccattgatttttttaGATAGCA-----GTAATAGATGTTC-ATGTTAGAAAATTA-AAAAAAA----------A---------TTATAATCTCACCACTTGAAAATAATTATAA---ACTTTTTAG i aotNan1.NW_018491581v1 I 2 C 0 s otoGar3.GL873618 4239885 95 + 7922563 --------------------------------TTGT--TTATT--ATAGAA-----GGAATGGATATTC-ATGGTAGAAAATAAAAAAAAAG----------AC--------TTATAACCCTATCACCTGAAGATAATTATTGTTCATATTTTAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124769254 100 + 151834684 -------------TTACTTA------------TTGA--T---------GAA-----AAAATGGGCACCCTTTGGAAAAAAAATG-ACAAATA----------ATCTCAGCACTCCCAGCCTGGACACCTGAAGACAGGTGTTG---TTATCCTAC i mm10.chr5 C 0 C 0 s canFam3.chr26 33108752 111 - 38964690 ----------------------TCACTTCCAATGTA--TTTATTAAATGTA-----TCAATGGATGTTC-ATGGTAGAAAACTG--AGAAAAT----AAATCAC--------TTATAATTCTACCACCTAAAGATAATTATTAGTAACATTTCAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 780599 104 - 1116856 --------------------------------ttaa--tttatt-atagaa-----gtaatagatgtac-atggtagaaaattg--aaaaaatagacaaatcat--------tcataattctagcacctgaagataattattgttaatattttgg i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I a score=643861.000000 s hg38.chr12_KI270834v1_alt 4717 72 + 119498 tgtatttctttgcctacttaaaaatg------------------------------------------catgcacacatgt--atacat-atgc----atacac----acatactactcatatat s panTro5.chr12 127290800 72 + 137163284 tgtatttctttccctacttaaaaatg------------------------------------------catgcacacatgt--atacat-atgc----atacac----acatactactcatatat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641853 72 + 135337776 tgtatttctttccctacttaaaaatg------------------------------------------catgcacacatgt--atacat-AGGc----atacac----acatactactcatatat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154728 72 - 8369578 tgtatttctttccctacttaaaaatg------------------------------------------catgcacacatgt--atacat-atgc----ataCAC----ACATACTACTCATATAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97802931 72 + 106955855 tgtatttctttccctaggtaaaaatg------------------------------------------catgcacatacgt--atacat-atgc----ataCAC----ACATACTACTCATATAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123861282 72 + 133663169 tgtatttctttccctacttaaaaatg------------------------------------------catacacacacgt--atacat-atgc----ataCAC----ACATACTACTCATATAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169480 72 + 137757926 tgtatttctttccctacttaaaaatg------------------------------------------catacacacacgt--atacat-atgc----ataCAC----ACATACTACTCATATAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574586 72 - 16319837 tgtatttctttccCTACTCAAAAATG------------------------------------------CATACACACACGT--ATACAT-ATGC----ATACAC----ACATACTACTCATATAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196741 72 + 20526591 TGTATTTCTTTCCCTACTTAAAAATG------------------------------------------CATACACACACGt--atacat-atgc----atacac----acatactactcatatat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169656 72 + 128539186 tgtatttctttccCTACTTAAAAATG------------------------------------------CATGCACGCAcat--atacat-atgc----atacac----acatactactcatatat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482580 72 + 6255621 ggtatttctttccctacttaaaaatg------------------------------------------catacacacacgt--atacat-atgc----ataCAC----ACATACTACTCATATAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4546326 72 - 8658521 tgtatttctttccctacttcaaaatg------------------------------------------catgcacacacat--atacat-atgc----ataCAC----ACATACTACTCATATAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114749405 64 + 124281992 TATATTTCTTTCCCTACTTAAAAATG------------------------------------------TATGTACACACAT----ACAT-ATAC----ACATAC----------TACTTATATCT i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2808037 71 + 4466143 TGTATTTCTTTCCCTACTTAAAAATG------------------------------------------TATGCACACAGATGTACACAT-ATAC----ATATAC----ACA---TACTCATATAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1505043 74 + 5364348 TGTATTTCTTTCCCTACTTAAAAATG------------------------------------------TATGTACACACATGTACACAT-ATAC----ATATAC----ACATACTACTCATGTAT i aotNan1.NW_018491581v1 C 0 I 2555 s otoGar3.GL873618 4239980 45 + 7922563 Tatacatcctttcctacttaaaaatg--------------------------------------------tacacacatgc--acacct-gt--------------------------------- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124769354 118 + 151834684 TAAGTGTTGCTCCCTACTTAAGATTGAAGTACTTACCATGAGAGCAGGAAGATGCCAGGAAGATGCCACATGAACCCATTT---TACATAATGG----ATACAAGCTAACAAAAAGCTAAAAGAT i mm10.chr5 C 0 C 0 s canFam3.chr26 33108863 76 - 38964690 TGTATCTCCTTGAATACTTAAAAGTG------------------------------------------TGTAGACACATGC--TTACAT-ATACCTCTACACAC----CTACACAAACTATACAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 780703 66 - 1116856 tgtgtagccttccatacttaaatatg------------------------------------------cacacatgcatat--atatat-acac----atacac----atataCAACAT------ i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e saiBol1.JH378194 394538 918 - 9212255 I a score=558853.000000 s hg38.chr12_KI270834v1_alt 4789 70 + 119498 gtgcacatacacccatgcatttgtatgcactaacata-cacgtacacaggtacacacatacaca---------------tatccc--t s panTro5.chr12 127290872 70 + 137163284 gtgcacatacacccatgcatttgtatgcactaacata-cacgtacacaggtacacacatacaca---------------tacccc--t i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641925 70 + 135337776 gtgcacatacacccatgcatttgtatgcactaacata-cacgtacacaggtacacacatacaca---------------tacccc--t i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154800 70 - 8369578 GTGCACATACACCCATGCATTTGTATGCACTAACATA-CACGTACACAGGTACACACATACACA---------------TACCCC--T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97803003 70 + 106955855 GTGCACAGACACCCATGCATTTGTATGCACAAACATA-CAAGTACACAGGTACACACATACACA---------------TACTCC--T i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123861354 70 + 133663169 GTGCATATATGCCCATGCATTTGTGTGcacaaacata-cacatacacaggtacatacatacaca---------------tacccc--t i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169552 70 + 137757926 GTGCATATATGCCCATGCATTTGTGTGcacaaacata-cacatacacaggtacatacatacaca---------------tacccc--t i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574658 70 - 16319837 GTGCATATATGCCCATGCATTTGTGTGCACAAACATA-CACATACACAGGTACATACATACACA---------------TACCCC--T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196813 70 + 20526591 gtgcatatatgcccatgcatttgtgtgcacaaacata-cacatacacaggtacacacatacaca---------------tacccc--t i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169728 70 + 128539186 gtgcatatacgctcatgcatttgTGTGCACAAACATA-CACATACACAGGTACACACATACAGA---------------TACCCC--T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482652 70 + 6255621 GTGCATATATGCCCATGCATTTGTGTGcacaaacata-cacatacacaggtacacacatacaca---------------tacccc--t i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4546398 70 - 8658521 GTGGATATACGCCCATGCATTTGTGTGCACAAACATA-CACATACACAGGTACACACATACACG---------------TACCCC--T i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114749469 66 + 124281992 GGGCACATATGCCCGTGCATGTGTATGCacaaaca-------tacacagctacacacatacaca---------------tacccccct i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2808108 66 + 4466143 GTGCACATATGCCTGTGCATGTGTATGCACGAACA-------TACACAGCTACACACATACGCA---------------TACCCCCat i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4240025 66 + 7922563 gtgcacataaagccttggatagatatgcataaacata-catgcacgcagatatagacagatgca---------------t----c--c i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124769472 82 + 151834684 GTGTGGACACATCCataca----cacacacacacatatcacatacaatagtgtacatatatgcaagaggtatgtgtatgtattca--t i mm10.chr5 C 0 C 0 s canFam3.chr26 33108939 67 - 38964690 AGTCATGCACAAACatgtataaacacacatacatgta-tatatatacatgtatataaatgcata---------------tac-----c i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 780769 70 - 1116856 GTGTACATatgcatacatattcatatgtacatccata-cacacatacacacaaacatgcatgca---------------tatcca--t i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I e saiBol1.JH378194 394538 918 - 9212255 I a score=126889.000000 s hg38.chr12_KI270834v1_alt 4859 14 + 119498 acacatat--------------atgtat s panTro5.chr12 127290942 14 + 137163284 acacatat--------------atgtat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125641995 14 + 135337776 acacatat--------------atgtat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154870 14 - 8369578 ACACATAT--------------ATGTAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97803073 24 + 106955855 ACACatatat----gcacatacatgtat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123861424 24 + 133663169 acacatacat----gcacatacatgtat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169622 24 + 137757926 acacatacat----gcacatacatgtat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574728 24 - 16319837 ACACATACAT----GCACatacatgtat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196883 24 + 20526591 acacatacat----gcacatatatgtat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169798 24 + 128539186 ACACATACAT----GCACATACGTGTAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482722 24 + 6255621 acacatacat----gcacatacatgtat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4546468 24 - 8658521 ACACATACAT----GCACatacatgtat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114749535 24 + 124281992 acacatatat----gcacatacatgtat i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2808174 24 + 4466143 acacacatat----gcacatacatgtat i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4240091 20 + 7922563 acacatacgt----acat----gtatat i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124769554 28 + 151834684 atacacacctctaaacaaatacatttac i mm10.chr5 C 0 C 0 s canFam3.chr26 33109006 16 - 38964690 acatatacat------------atgtat i canFam3.chr26 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 780839 0 - 1116856 C e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I e saiBol1.JH378194 394538 918 - 9212255 I a score=49465.000000 s hg38.chr12_KI270834v1_alt 4873 5 + 119498 atagt s panTro5.chr12 127290956 5 + 137163284 atagt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125642009 5 + 135337776 atagt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154884 5 - 8369578 ATagt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97803097 5 + 106955855 acagt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123861448 5 + 133663169 acagt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169646 5 + 137757926 acagt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574752 5 - 16319837 acagt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196907 5 + 20526591 acagt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169822 5 + 128539186 Acagt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482746 5 + 6255621 acagt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4546492 5 - 8658521 acagt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114749559 5 + 124281992 acagt i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2808198 5 + 4466143 acagt i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4240111 5 + 7922563 acagt i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124769582 5 + 151834684 atagt i mm10.chr5 C 0 I 402 e micMur3.chr21 9421851 133 - 31815103 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 780839 0 - 1116856 C e canFam3.chr26 33109022 0 - 38964690 C e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I e saiBol1.JH378194 394538 918 - 9212255 I a score=1692707.000000 s hg38.chr12_KI270834v1_alt 4878 219 + 119498 caggtgtcacctaatggcagggacacattctgagaaatgtgtcctgagttga-ttcgtgattgtgcaaaca------------------------aacctag-ctgggatgactactgcacacctaggctattggg-------tagaatctattgctctagactgcaagcctgtacagcaaggaactacattgagtacggccagccattgtaacctaatag-----tacgtgtgtatctaaacatagaaaaggtaca s panTro5.chr12 127290961 219 + 137163284 caggtgtcacctaatggcagggacacattctgagaaatgtgtcctgagttga-ttcgtgattgtgcaaaca------------------------aacctag-ctgggatgactactgcacacctaggctattggg-------tagaatctattgctctagactgcaatcctgtacagcaaggaactatattgagtactgtcagccattgtaacctaatag-----tacctgtgtatctaaacacagaaaaggtaca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125642014 219 + 135337776 caggtgtcacctaatggcagggacacattctgagaaatgtgtcctgagttga-ttcgtgattgtgcaaaca------------------------aacctag-ctgggatgactactgcacacctaggctattggg-------tagaatctattgctctagactgcaagcctgtacagcaaggaactatattgagtactgtcagccattgtaacctaatag-----tacctgtgtatctaaacacagaaaaggtaca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8154889 219 - 8369578 caggtgtcacctaatggcagggacacattctgagaaatgtgtcctgagttga-ttcgtgattgtgcaagta------------------------aacctag-ctaggatgactactgcacacctaggctattggg-------tagaatctattgctctagactgcaagcctgtacagcaaggaactatattgagtactgtcagtcattgtaacctaatag-----tacgtgtgtatctaaacacagaaaaggtaca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97803102 226 + 106955855 catgtgtcacctaatggcggggacacattctgtgaaatgtgtcctgagttga-ttcgtgattgtgcaaaca------------------------aacctag-ctgggatgactgctgcacacctaggctattgggtagagtctagagtctattgctgtagactgcaagcctgtacagcaagggactatattgagtactgtcagccattgtaacctaatag-----tacgcgtgtatctaaacatagaaaaggtaca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123861453 219 + 133663169 tgtgtgtcacctaatggcggggacacattctgagaaatgtctcctgagttga-ttcgtgtttgtgcaaaca------------------------aacctag-ctgggatgactactgcacacctaggctgttggg-------tagagcctattgctctagactgcaagcctgtacagcaagtgactatattgagtactgtcagccattgtaacctagtag-----tacatgtgtatctaaacatagaaaaggtaca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169651 219 + 137757926 tgtgtgtcacctaatggcggggacacattctgagaaatgtctcctgagttga-ttcgtgtttgtgcaaaca------------------------aacctag-ctgggatgactactgcacacctaggctgttggg-------tagagcctattgctctagactgcaagcctgtacagcaagtgactatattgagtactgtcagccattgtaacctagtag-----tacatgtgtatctaaacatagaaaaggtaca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574757 219 - 16319837 tgtgtgtcacctaatggcggggacacattctgagaaatgtctcctgagttga-ttcgtgtttgtgcaaaca------------------------aacctag-ctgggatgactactgcacacctaggctgttggg-------tagagcctattgctctagactgcaagcctgtacagcaagtgactatattgagtactgtcagccattgtaacctagtag-----tacatgtgtatctaaacatagaaaaggtaca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12196912 219 + 20526591 tgtgtgtcacctaatggcggggacacattctgagaaatgtctcctgagttga-ttcgtgtttgtgcaaaca------------------------aacctag-ctgggatgactactgcacacctaggctgttggg-------tagagcctattgctctagactgcaagcctgtacagcaagtgactatattgagtactgtcagccattgtaacctagtag-----tacatgtgtatctaaacatagaaaaggtaca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119169827 219 + 128539186 catgtgtcacctaatggcagggacacattctgagaaatgtctcctgagttga-ttcgtgtttgtgcaaaca------------------------aacctcg-ctgggatgactactgcacacctaggctgttggg-------tagagcctattgctctagactgcaagcctgtacagcaagtgactatattgagtactgtcagccattgtaacctagtag-----tacgtgtgtatctaaacatagaaaaggtaca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482751 219 + 6255621 tgtgtgtcacctaatggcggggacacattctgagaaatgtctcctgagttga-ttcgtgtttgtgcaaaca------------------------aacctag-ctgggatgactactgcacacctaggctgttggg-------tagagcctattgctctagactgcaagcctatacagcaagtgactatattgagtactgtcagccattgtaacctagtag-----tacatgtgtatctaaacatataaaaggtaca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4546497 219 - 8658521 catgtgtcacctaatggcggggacacattctgagaaatgtctcctgagttga-ttcgtgtttgtgcaaaca------------------------aacctag-ctgggatgactactgcacacctaggctgttggc-------tagagcctattgctctagactgcaagcctgtacagcaagtgactatattgagtactgtcagccattgtaacctagtag-----tacgtgtgtatctaaatatagaaaaggtaca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114749564 216 + 124281992 cacatgtcatctaatgac-gggatacat--tgagaaatgtgtcctgagttga-ttcgtgattgtgcaaaca------------------------aacctag-ctgggctgactactgcacacccaggctatgggg-------tacagcctgttgctctagactgcaagcctggacagtgagtgactgtactgagtactgtcagccatggtaaccgaatag-----tacgtatgtatctaaacgtagaaaaggtgca i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2808203 218 + 4466143 cacgtgtcacctaatgac-gggataccttctgagaaatgtgtcctgagttga-ttggtgattgtgcaaaca------------------------aacctaa-ctgggctgactgctgcacacccaggctatgggg-------tacagcctgttgctctagactgcgagcctggacagtgagtgactatactgagtactgtcagccaaggtaactgaatag-----tacgtatgtatctaaacgtagaaaaggtgca i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4240116 218 + 7922563 cctgtgtctctcagtggtggggatatgtcccgagaaatgtgtggtcaggtgatttcattactgttcaaacactcgggagtgctgaggctttacacagcctagaccgcattgcctcctgcacacctaggctgt-gtg-------ta-----------cctgggccacaaacctgaac--------------------tctgtaggtgtttataacacagcggtgagttatttgtgcatccaaatatacctaaggtaga i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e mm10.chr5 124769587 402 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 780839 0 - 1116856 C e canFam3.chr26 33109022 0 - 38964690 C e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I e saiBol1.JH378194 394538 918 - 9212255 I a score=1883.000000 s hg38.chr12_KI270834v1_alt 5097 1 + 119498 g s panTro5.chr12 127291180 1 + 137163284 g i panTro5.chr12 C 0 C 0 s panPan2.chr12 125642233 1 + 135337776 g i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8155108 1 - 8369578 g i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97803328 1 + 106955855 g i nomLeu3.chr10 C 0 C 0 s calJac3.chr9 114749780 1 + 124281992 g i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2808421 1 + 4466143 g i cebCap1.NW_016107484v1 C 0 I 513 s otoGar3.GL873618 4240334 1 + 7922563 a i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e mm10.chr5 124769587 402 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 780839 0 - 1116856 C e canFam3.chr26 33109022 0 - 38964690 C e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I e saiBol1.JH378194 394538 918 - 9212255 I e colAng1.NW_012116043v1 4546716 0 - 8658521 C e manLeu1.NW_012103587v1 482970 0 + 6255621 C e chlSab2.chr11 119170046 0 + 128539186 C e cerAty1.NW_012001186v1 12197131 0 + 20526591 C e macNem1.NW_012010578v1 10574976 0 - 16319837 C e macFas5.chr11 128169870 0 + 137757926 C e rheMac8.chr11 123861672 0 + 133663169 C a score=5807.000000 s hg38.chr12_KI270834v1_alt 5098 4 + 119498 ccaa s panTro5.chr12 127291181 4 + 137163284 ccaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125642234 4 + 135337776 ccaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8155109 4 - 8369578 ccaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97803329 4 + 106955855 ccaa i nomLeu3.chr10 C 0 C 0 s calJac3.chr9 114749781 4 + 124281992 tcaa i calJac3.chr9 C 0 I 502 s otoGar3.GL873618 4240335 2 + 7922563 --aa i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e mm10.chr5 124769587 402 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 780839 0 - 1116856 C e canFam3.chr26 33109022 0 - 38964690 C e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I e cebCap1.NW_016107484v1 2808422 513 + 4466143 I e saiBol1.JH378194 394538 918 - 9212255 I e colAng1.NW_012116043v1 4546716 0 - 8658521 C e manLeu1.NW_012103587v1 482970 0 + 6255621 C e chlSab2.chr11 119170046 0 + 128539186 C e cerAty1.NW_012001186v1 12197131 0 + 20526591 C e macNem1.NW_012010578v1 10574976 0 - 16319837 C e macFas5.chr11 128169870 0 + 137757926 C e rheMac8.chr11 123861672 0 + 133663169 C a score=9363.000000 s hg38.chr12_KI270834v1_alt 5102 9 + 119498 ggccgggca s panTro5.chr12 127291185 9 + 137163284 ggccgggca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125642238 9 + 135337776 ggccgggca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8155113 9 - 8369578 ggccgggcg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97803333 9 + 106955855 ggccaggcg i nomLeu3.chr10 C 0 C 0 s otoGar3.GL873618 4240337 9 + 7922563 ggcagagta i otoGar3.GL873618 C 0 I 792 e micMur3.chr21 9421851 133 - 31815103 I e mm10.chr5 124769587 402 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 780839 0 - 1116856 C e canFam3.chr26 33109022 0 - 38964690 C e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I e cebCap1.NW_016107484v1 2808422 513 + 4466143 I e saiBol1.JH378194 394538 918 - 9212255 I e calJac3.chr9 114749785 502 + 124281992 I e colAng1.NW_012116043v1 4546716 0 - 8658521 C e manLeu1.NW_012103587v1 482970 0 + 6255621 C e chlSab2.chr11 119170046 0 + 128539186 C e cerAty1.NW_012001186v1 12197131 0 + 20526591 C e macNem1.NW_012010578v1 10574976 0 - 16319837 C e macFas5.chr11 128169870 0 + 137757926 C e rheMac8.chr11 123861672 0 + 133663169 C a score=255852.000000 s hg38.chr12_KI270834v1_alt 5111 311 + 119498 tggtggctcacgcctgtaatcccagcactttgggaggccgaggagggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaaattagccgggtgtggtgccgggtgtggtggcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacccaggaggcagagc-tgcagtgagccgagatcgcaccactgcactccagcctgggtgacagagcaagactctgtctcaaaaaaaaaaaaaaa----------ggaaaggtacg s panTro5.chr12 127291194 308 + 137163284 tggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtgggtcacgaggtcaggagattgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaaattagccgggcatggtg------------gcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccaggaggcagagc-tgcagtgagccgagatcgcaccaccgcactccagcctgggcgacagggcaagactctgtctcaaaaaaaaaaaaaaa-aaaagaaaagaaaaggtacg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125642247 306 + 135337776 tggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagattgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaaattagccgggcatggtg------------gcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccaggaggcagagc-tgcagtgagccgagatcgcaccaccgcactccagcctgggcgacagggcaagactctgtctacaaaaaaaaaaaaaa---aagaaaagaaaaggtatg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8155122 301 - 8369578 tggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatggagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaaattagccaggcgtggtg------------g-gggtgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccaggaggcagagc-tgcagtgagccgagatcgcaccactgcactccagcctgggcgacagagcaagactctgtctcaaaaaaaaaaaaaaa-------aaagaaaaggtacg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97803342 310 + 106955855 tggtggctcatgcctgtaatcacagcactttgggaggccgaggtgggtggatcatgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctactaaaaatacaaaaaaaattagccgggtgtggtg------------gtgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggggcttgcagtgagctgagattgtgccactgcactccagcctgggcaacagagcgagactccatctcaaaaaaaaaaaaaaaaaaaagaaaagaaaaggtaca i nomLeu3.chr10 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e mm10.chr5 124769587 402 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 780839 0 - 1116856 C e canFam3.chr26 33109022 0 - 38964690 C e otoGar3.GL873618 4240346 792 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I e cebCap1.NW_016107484v1 2808422 513 + 4466143 I e saiBol1.JH378194 394538 918 - 9212255 I e calJac3.chr9 114749785 502 + 124281992 I e colAng1.NW_012116043v1 4546716 0 - 8658521 C e manLeu1.NW_012103587v1 482970 0 + 6255621 C e chlSab2.chr11 119170046 0 + 128539186 C e cerAty1.NW_012001186v1 12197131 0 + 20526591 C e macNem1.NW_012010578v1 10574976 0 - 16319837 C e macFas5.chr11 128169870 0 + 137757926 C e rheMac8.chr11 123861672 0 + 133663169 C a score=445982.000000 s hg38.chr12_KI270834v1_alt 5422 78 + 119498 gccaaaatatggtctaataatcctatgggaccaccattatatatgaaattcatcactgaatgaaacatcctt-atgcag s panTro5.chr12 127291502 78 + 137163284 gccaaaatatggtccaataatcctatgggaccaccattatatatgaaattcatcactgaatgaaacgtcctt-atgcag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125642553 78 + 135337776 gccaaaatatggtccaataatcctatgggaccaccattatatatgaaattcatcactgaatgaaacgtcctt-atgcag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8155423 78 - 8369578 gccaaaatatggtctaataatcctatgggagcaccattatatatgaaattcatcactgaatgaaacgtcctt-atgcag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97803652 78 + 106955855 gccaaaatatggtctaataatcctatgggaccaccattatatatgagattcatcactgactgaaatgtcctt-atgcag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123861672 78 + 133663169 gccaaaatatggtctaataatcctatgggaccaccattgtatatgagattcatcactggctgaaacgtcctt-atgcag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169870 78 + 137757926 gccaaaatatggtctaataatcctatgggaccaccattgtatatgagattcatcactggctgaaacgtcctt-atgcag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10574976 78 - 16319837 gccaaaatatggtctaataatcctatgggaccaccattgtatatgagattcatcactggctgaaacgtcctt-atgcag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12197131 78 + 20526591 gccaaaatatggtctaataatcctatgggaccaccattgtatatgagattcatcactggctgaaacgtcctt-atgcag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119170046 78 + 128539186 gccaaaatatggtctaataatcttatgggatcaccattgtatgtgagattcatcactggttgaaacgtcctt-atgcag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 482970 79 + 6255621 gccaaaatatggtctaataatcctatgggaccaccattgtagatgagattcatcactggctgaaacgtccttaatgcag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4546716 78 - 8658521 gccaaaatatggtctaataatcctatgggaccaccattgtatatgagattcatcactggctgaaatgtcctt-atgcag i colAng1.NW_012116043v1 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e mm10.chr5 124769587 402 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 780839 0 - 1116856 C e canFam3.chr26 33109022 0 - 38964690 C e otoGar3.GL873618 4240346 792 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I e cebCap1.NW_016107484v1 2808422 513 + 4466143 I e saiBol1.JH378194 394538 918 - 9212255 I e calJac3.chr9 114749785 502 + 124281992 I a score=66315.000000 s hg38.chr12_KI270834v1_alt 5500 11 + 119498 tacatgactgt s panTro5.chr12 127291580 11 + 137163284 tacatgactat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125642631 11 + 135337776 tacatgactgt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8155501 11 - 8369578 tacatgactgT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97803730 11 + 106955855 cacatgactgt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123861750 11 + 133663169 tgcatgactgt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169948 11 + 137757926 tgcatgactgt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10575054 11 - 16319837 tgcatgactgt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12197209 11 + 20526591 tgcatgactgt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119170124 11 + 128539186 tgcatgactgt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 483049 11 + 6255621 tgcatgactgt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4546794 11 - 8658521 tgcatgactgt i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 395456 11 - 9212255 tacatgtatgc i saiBol1.JH378194 I 918 I 26 e micMur3.chr21 9421851 133 - 31815103 I e mm10.chr5 124769587 402 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 780839 0 - 1116856 C e canFam3.chr26 33109022 0 - 38964690 C e otoGar3.GL873618 4240346 792 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I e cebCap1.NW_016107484v1 2808422 513 + 4466143 I e calJac3.chr9 114749785 502 + 124281992 I a score=858565.000000 s hg38.chr12_KI270834v1_alt 5511 197 + 119498 acatagtacaccacacatgtata----caca-cgtatatgcatgtagacacatatgcatgcaaacacacaaa-------------atatacatacagtgtgcacacagtgtacctaacatatacacat------aatgtatacacacatgtacatatgcacataatgtacatacagtgtacctaatatacacacgtacacataatatatat---------------------------acatgtatac-- s panTro5.chr12 127291591 197 + 137163284 acatagtacaccacacatgtata----caca-tgtatatgcatgtagacacatatgcatgcaaacacacaaa-------------atatacatacagtgtgcacacagtgtacctaacatatacacat------aatgtatacacatgtgtacatatgcacataatgtacatacagtgtacctaatatacacacgtacacataatatatat---------------------------acatgtatac-- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125642642 193 + 135337776 acatagtacaccacacatgtata----caca-tgtatatgcatgtagacacatatgcatgcaaacacacaaa-------------atatacatacagtgtgcacacagtgtacctaacatatacacat------aatgtatacacatgtgtacatatgcacataatg----tacagtgtacctaatatatacatgtacacataatatatat---------------------------acatgtatac-- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8155512 197 - 8369578 ACATAGTACACCACACATGTGTA----CACA-CGCATATGCATGTAGACACATATGCATGCAAACACACAAA-------------ATATACATACAGTGTGCACACAGTGTGCCTAACatatacacat------aatgtatacacacgtgtacatatgcacataatgtacatacagtgtacctaatatacacacgtacacataatatatat---------------------------acatgtatac-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97803741 196 + 106955855 acatagtacaccacacatgtata----cata-tgtatatacatgtagacacatatgcatgaaaacacacaaa-------------atatacatacagtgtgcacacagtgtacctagcatatacacat------aatgtatatacatgtgtacatatgcacataaggtacacacagtgtacctcatatatacatgtacacaaaatgtatac----------------------------tatgtattc-- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123861761 147 + 133663169 acatagtataccacacatgtatatatgcaca-tgtatatacatatagatacatatgcatggaaacacacaaa-------------atatacatacagtgtgcacacagcatacctaacatatacacgt------aatgtatatacatgtgtacgtatgcacataatg----------------------------------------------------------------------------------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128169959 147 + 137757926 acatagtataccacacatgtatatatgcaca-tgtatatacatatagatacatatgcatggaaacacacaaa-------------atatacatacagtgtgcacacagcatacctaacatatacacat------aatgtatatacatgtgtacgtatgcacataatg----------------------------------------------------------------------------------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10575065 147 - 16319837 acatagtataccacacatgtatatatgcaca-tgtatatacatatagatacatatgcatggaaacacacaaa-------------atatacatacagtgtgcacacagcatacctaacatatacacat------aatgtatatacatgtgtacgtatgcacataatg----------------------------------------------------------------------------------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12197220 147 + 20526591 acgtagtataccacacatgtatatatgcaca-tgtatatacatatagatacatatgcatggaaacacacaaa-------------atatacatacagtgtgcacacagcatacctaacatatacacat------aatgtatatacatgtgtaggtatgcacataatg----------------------------------------------------------------------------------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119170135 147 + 128539186 acatagtataccacacatgtatatatacaca-tgtatatacatgtagacacatatgcatggaaacacacaaa-------------atatacatacagtgtgcacacagcatacctaacatatacacat------aatgtatatacatgtgtacatatgcacataatg----------------------------------------------------------------------------------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 483060 147 + 6255621 acatagtataccacacatgtatatatgcaca-tgtatatacatatagatacatatgcatggaaacacacaaa-------------atatacatacagtgtgcacacagcatacctaacatatacacat------aatgtatatacatgtgtatgtatgcacataatg----------------------------------------------------------------------------------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4546805 147 - 8658521 acatagtataccacacatgtatatatacaca-tgtatatacatgtagacacatatgcatggaaacacacaaa-------------atatacatacagtgtgcacacagcatacctaacatatacacat------aatgtatatacatgtgtacatatgcacataatg----------------------------------------------------------------------------------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114750287 239 + 124281992 acaatgtatactattcatataca----tacagtgtacacaca-gtataccta-atgtatacacatacacacaatgtatactattcatatacatacaGTGTACACACAGTGTACCTAATGTATACACGTACACACAATGTATAC-----TATTcatatacatacaatgcacacacagtgtacctaatagatacacatacataaaatgtacactatgtattcatatcacgcagtgtacacgcagatatatta i calJac3.chr9 I 502 C 0 s saiBol1.JH378194 395493 213 - 9212255 acaatgtacactatttgtatgca----tacaatgtacacaca-gtataccta-atgtatacatgtacacacactgtatactagtcatatacacacaatgtacacacagtgtacctaatatatacacatacatacaatatacac-tatgtattcatatacacacaatgtacacacagtttacttaagatatacatgtatgtataatgtacat------------------------------GGTATATTA i saiBol1.JH378194 I 26 C 0 e micMur3.chr21 9421851 133 - 31815103 I e mm10.chr5 124769587 402 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 780839 0 - 1116856 C e canFam3.chr26 33109022 0 - 38964690 C e otoGar3.GL873618 4240346 792 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I e cebCap1.NW_016107484v1 2808422 513 + 4466143 I a score=780901.000000 s hg38.chr12_KI270834v1_alt 5708 120 + 119498 atatacacataatgtacacacagtgtacctaatatatacatgtacacataatgtacac-tatgtattcgtatacacacgatgtgcacacagtgtacctagtatgcacacgtacatataatg s panTro5.chr12 127291788 120 + 137163284 atatacacataatgtacacacagtgtacctaatatatacatgtacacataatgtacac-tatgtattcgtatacacacaatgtgcacacagtgtacctaatatgcacacgtacatataatg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125642835 120 + 135337776 atatacacataatgtacacacagtgtacctaatatatacatgtacacataatgtacac-tatgtattcgtatacacacaatgtgcacacagtgtacctaatatgcacacgtacatataatg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8155709 120 - 8369578 atatacacataatgtacacacagtgtacctaatatatacatgtacacataatgtacac-tatgtattcgtatacacacaatgtgcacagagcatacctaatatgcacatgtacgtataatg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97803937 113 + 106955855 gtatatacgcaatgtacacacagtatacctaatacgcacacatatgcataatgtacac--acatatacatatacacacaatgt----ataatgtacctaatatacacatgtacacatgg-- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123861908 106 + 133663169 --------------tatacacagtgtacctaatatatacatgtacacataatgtacac-tatgtattcttgtacacacaatgtacacacagtgtacctaatatgcacatgtacatataatg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128170106 106 + 137757926 --------------tatacacagtgtacctaatatatacatgtacacataatgtacac-tatgtattcttgtacacacaatgtacacacagtgtacctaatatgcacacgtacatataatg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10575212 106 - 16319837 --------------tatacacagtgtacctaatatatacatgtacacataatgtacac-tatgtattcttgtacacacaatgtacacacagtgtacctaatatgcacacgtacatataatg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12197367 106 + 20526591 --------------tacacacagtgtacctaatatatacatgtacacataatgtacac-tatgtattcttgtacacacaatgtacacacagtgtacctaatatgcacacgtacatataatg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119170282 104 + 128539186 --------------tacacacagtgtacttagtatatacatgtacacataatgaacac-tatgtattcttgtacacacaatgt--atgcagtgtacctaacatgcacacatacatataatg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 483207 106 + 6255621 --------------tacacacagtgtacctaatatatacatgtacacataatgtacac-tatgtactcttgtacacacaatgtacacacagtgtacctaatatgcacacgtacatataatg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4546952 101 - 8658521 --------------tacacacagtgtacctaatatatacatgtacacataatgtacac-tatgtattcttgt----acaatgtacacacagtgtgcgtaatatgcacacatacatataat- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114750526 117 + 124281992 atatacacacaatgtacacatagggtacctaatatacac----acacataatgcatatacatgtatatgtatgcatacagtatacacacaGTGTAACTAATATGCACGCatacatacagtg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 395706 121 - 9212255 ATATACACACAATGTACACACAGGGTACCTAatatacacacatacacataatgtatatacatgtatatatatgcatacagtatacacacagtgtaactaatatgcgtgcatacatatgatg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2808935 121 + 4466143 atatacacacaatgtacacacagggtacttaatatacacacatacacataatgtatatacatgtgtatgtatgcatacagtatacacacagtgtaactaatatgcatgcatacatacaatg i cebCap1.NW_016107484v1 I 513 C 0 e micMur3.chr21 9421851 133 - 31815103 I e mm10.chr5 124769587 402 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 780839 0 - 1116856 C e canFam3.chr26 33109022 0 - 38964690 C e otoGar3.GL873618 4240346 792 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=1384852.000000 s hg38.chr12_KI270834v1_alt 5828 194 + 119498 tacacacatat------acatatacacacaatgt----tcagtgtacccaatatacacaggtacacatagtatatacacatgtatacatatacacacagtgtacacaatataccaaagatacgcataatatacatata-------------atgtacacatgtacgtatgtatac------acatata-cataTGTATCAATACAGA---t----------------------------------------------ttttttttttt-tgaga s panTro5.chr12 127291908 193 + 137163284 tacacacatat------acatatatacacaatgt----tcaatgtacccaatatacacatgtacacatagtatatacacatgtatacatatacacacagtgtacacaatataccaaagatacgcataatatacatata-------------atgtacacatgtacatatgtatac------acatata-catatgtatCGATACAGA---t----------------------------------------------ttttttttttt--gaga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125642955 193 + 135337776 tacacacatat------acgtatatacacaatgt----tcaatgtacccaatatacacatgtacacatagtatatacacatgtatacatatacacacagtgtacacaatataccaaagatacgcataatatacatata-------------atgtacacatgtacatatgtatac------acatata-catatgtatCGATACAGA---t----------------------------------------------ttttttttttt--gaga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8155829 188 - 8369578 tgcacacatat------acat------acaatgt----tcaatgtacccaatatacacatgtacacatagtatatacacatgtatacatatacacacagtgtacacaatataccaaagatacgcataatgtacatata-------------atgtacacatgtacatatgtatac------acatata-catatgtatCGATACAGA---t----------------------------------------------ttttttttttt-tgaga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97804050 136 + 106955855 -----acatac------acac-----------------------------atgtatacatatacacacagtgtacacag-----------------------------tataccaaacatatgcataatatacatata-------------atgtgcacatgtacatatgtatac------acatata-catatgtatCGATACAAA---t----------------------------------------------tttttttttttttgaga i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123862014 188 + 133663169 tacgcacatat------acatatacacacaatgt----ataatgtacctaatatacacatatacacacaatatacacacatgtatacatatacacacagtgtacacaatataccaaacatacacataatatacatata-------------atgtatacacgtacatatgtat--------acatata-catatgtatCAATACAGA---t----------------------------------------------tttttttt-----gaga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128170212 188 + 137757926 tacgcacatat------acatatacacacaatgt----ataatgtacctaatatacacatatacacacaatatacacacatgtatacatatacacacagtgtacacaatataccaaacatacacataatatacatata-------------atgtatacacgtacatatgtat--------acatata-catatgtatCAATACAGA---t----------------------------------------------tttttttt-----gaga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10575318 188 - 16319837 tacgcacatat------acatatacacacaatgt----ataatgtacctaatatacacatatacacacaatatacacacatgtatacatatacacacagtgtacacaatataccaaacatacacataatatacatata-------------atgtatacatgtacatatgtat--------acatata-catatgtatCAATACAGA---t----------------------------------------------tttttttt-----gaga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12197473 188 + 20526591 tacacacatat------acatatacacacaatgt----ataatgtacctaatatacacatgtacacacaatatacacacatgtatacatatacacacagtgtacacaatataccaaatatacacataatatacatata-------------atgtatacacgtacatatgtat--------acatata-catatgtatCAATACAGA---t----------------------------------------------tttttttt-----gaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119170386 190 + 128539186 tacacacatat------acatatacacacaatgt----acaatgtacctaatatacacatgtacacacaatatacacacatgtatacatatacacacagtgtacacaatataccaaacgtatgtataatatacatata-------------atgtacacatgtgcatatgtatac------acatata-catatgtatTGATACAGA---t----------------------------------------------tttttttt-----gaga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 483313 188 + 6255621 tacacacatat------acatatacacacaatgt----ataatgtacctaatatacacatgtacacacaatatacacacatgtatacatattcacacagtgtacacaatataccaaacatacacataagatacatata-------------atgtatacacgtacatatgtat--------acatata-cgtatGTATCAATACAGA---t----------------------------------------------tttttttt-----gaga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4547053 186 - 8658521 --tacacatat------acatatacatacaatgt----acaatgtacctaatatacacatgtacacacaatatacacacatgtatacatat--acacagtgtatacaatataccaaacgtatgcataatatacatata-------------atgtacacacgtacctatgtatac------acatata-catatgtaCTGATACAGA---t----------------------------------------------tttttttt-----gaaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114750643 192 + 124281992 tacatacatatat----acatatacacacaatct--acacagtgtacctaatatacacatgtgcacataatatacacacacgta--------cacacagtgtacacagtataccaaacatacatataatatacatata-------------atctacacgcatacatatgtatgc------acatatg-catatGTATCAATACAGAtttt----------------------------------------------ttttttgtttt--gaga i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 395827 195 - 9212255 tacatatatatatatacacatatacacacaatctacacacagtgtacctaatatacacatgtacacataaaatacacacatgta--------cacacagtgtacacaatataccaaacataaacataatatacatata-------------atctacacacatacatatgtatac------gcatata-catatGTATCAATATAGA---t----------------------------------------------ttttttgtttt--gaga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2809056 197 + 4466143 tacatacatatat----acatatacacacaatgtacacacaatgtacctagtatacacatgtacacataatatacacatacgta--------cacgcagtgtacacaatataccaaacataaacttaatatacataca-------------atctacatacatacatatgtatacacatatacatata-catatgtatCAATACAGA---t----------------------------------------------ttttttgtttt--gaga i cebCap1.NW_016107484v1 C 0 C 0 s dasNov3.JH568189 780839 240 - 1116856 cacatacataa------atatatacacaca---t----gccacatacataaataacacatttacatat-gcatatgcacatata----catacacacagtg-----aatgtatcacacatacacacaacatatatacatatatatacaggtatgtacacacacatatacatatgt------ccatatattatacatatGGATACAGA---TGTATTTTGAAAGGGGAATCATAAAGGGCATATTATTTTTTTAATAAttttatttttt--agga i dasNov3.JH568189 C 0 I 196 e micMur3.chr21 9421851 133 - 31815103 I e mm10.chr5 124769587 402 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e canFam3.chr26 33109022 0 - 38964690 C e otoGar3.GL873618 4240346 792 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=417523.000000 s hg38.chr12_KI270834v1_alt 6022 48 + 119498 cagggtctccctatgttgccaaggctggtcatgaactcctgggctcaa s panTro5.chr12 127292101 48 + 137163284 cagggtctccctatgttgccaaggctggtcatgaactcctgggctcaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125643148 48 + 135337776 cagggtctccctatgttgccaaggctggtcatgaactcctgggctcaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8156017 48 - 8369578 cagggtctccctatgttgccaaggctggtcatgaactcctgggctcaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97804186 48 + 106955855 cagggtctccctgtgttgccaaggctggtcatgaactcctgggctcaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123862202 46 + 133663169 c--ggtctccctatgttgccaaggctggtcatgaactcctgggctcaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128170400 46 + 137757926 c--ggtctccctatgttgccaaggctggtcatgaactcctgggctcaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10575506 46 - 16319837 c--ggtctccctatgttgccaaggctggtcatgaactcctgggctcaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12197661 46 + 20526591 c--ggtctccctatgttgccaaggctggtcatgaactcctgggctcaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119170576 48 + 128539186 cagggtctccctatgttgccaaggctggtcatgaactcctgggctcaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 483501 46 + 6255621 c--ggtctccctatgttgccaaggctggtcatgaactcctgggctcaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4547239 48 - 8658521 cggggtctccctatgttgccaaggctggtcatgaactcttgggctcaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114750835 48 + 124281992 tggagtctccctacattgccaagactgatcatgaactcctggtctcaa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 396022 48 - 9212255 tggggtctccctacgttgccaagactggtcatgaactcctggtctcaa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2809253 48 + 4466143 tggggtctccctacgttgccaaggctggtcatgaactcctggtctcaa i cebCap1.NW_016107484v1 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e mm10.chr5 124769587 402 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 781079 196 - 1116856 I e canFam3.chr26 33109022 0 - 38964690 C e otoGar3.GL873618 4240346 792 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=542827.000000 s hg38.chr12_KI270834v1_alt 6070 64 + 119498 gcagtctgctcaccttgacctcctaaagtattaggattacaggcatgagccaccgcacccggcc s panTro5.chr12 127292149 64 + 137163284 gcaatctgctcaccttgacctcctgaagtattaggattacaggcatgagccaccgcacccggcc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125643196 64 + 135337776 gcaatctgctcaccttgacctcctgaagtattaggattacaggcatgagccaccgcacccggcc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8156065 64 - 8369578 gcagtctgctcaccttgacatcctaaagtattaggattacaggcatgagccaccgcacccggcc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97804234 64 + 106955855 gcaatccgctcaccttgacctcctaaagtgttaggattataggcatgagccaccacacccggcc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123862248 64 + 133663169 gcaatctgctcaccttgacttcctaaagtgttaggattacaggcatgagccaccaccccctgcc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128170446 64 + 137757926 gcaatctgctcaccttgacttcctaaagtgttaggattacaggcatgagccaccaccccctgcc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10575552 64 - 16319837 gcaatctgctcaccttgacttcctaaagtgttaggattacaggcatgagccaccaccccctgcc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12197707 64 + 20526591 gcaatctgctcaccttgacttcctaaagtgttaggattacaggcatgagccaccaccccctgcc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119170624 64 + 128539186 gcaatctgctcaccttgacttcctaaagtgttaggattacaggcatgagccaccgccccctgcc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 483547 64 + 6255621 gcaatctgctcaccttgacttcctaaagtgttaggattacaggcatgagccaccaccccctgcc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4547287 64 - 8658521 acaatctgctcaccttgacttcctaaagtgttagggttacaggcatgagccaccgccccctgcc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114750883 64 + 124281992 gcaatccacttgccttgaccccctaaagtgttaggattacaggcatgagccaccacacccggcc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 396070 64 - 9212255 gcaatccacttgccttgaccctctaaagtgttaggattataggcatgagccaccacacctggcc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2809301 64 + 4466143 gcaatccacttgccttgaccccctaaggtgttaggattacaggcgtgagccaccacacccagcc i cebCap1.NW_016107484v1 C 0 C 0 s canFam3.chr26 33109022 31 - 38964690 gcaatatacaca----------------tatatGGATCACATACACA----------------- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e mm10.chr5 124769587 402 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 781079 196 - 1116856 I e otoGar3.GL873618 4240346 792 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=313242.000000 s hg38.chr12_KI270834v1_alt 6134 40 + 119498 ------TCAATATAGATTTTT-TGTTTTGAA-TATGGAATCA-TAAGAG s panTro5.chr12 127292213 40 + 137163284 ------TCGATATAGATTTTT-TGTTTTGAA-TATGAAATCA-TAAGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125643260 40 + 135337776 ------TCGATATAGATTTTT-TGTTTTGAA-TATGAAATCA-TAAGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8156129 40 - 8369578 ------TTGATATAGATTTTT-TGTTTTGAA-TATGGAATCA-GAAGAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97804298 36 + 106955855 ------TGGATACAGA----T-TATTTTGAA-TATGGAAACA-TAAGAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123862312 36 + 133663169 ------TCGATACAGA----T-TGTTTTGAA-TATGGAATCA-TAAGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128170510 36 + 137757926 ------TCGATACAGA----T-TGTTTTGAA-TATGGAATCA-TAAGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10575616 36 - 16319837 ------TCGATACAGA----T-TGTTTTGAA-TATGGAATCA-TAAGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12197771 36 + 20526591 ------TCGATAGAGA----T-TGTTTTGAA-TATGGAATCA-TAAGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119170688 36 + 128539186 ------TCGATACAGA----T-TGTTTTGAA-TATGGAATCA-TAAGAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 483611 36 + 6255621 ------TCGATACAGA----T-TGTTTTGAA-TATGGAATCA-TAAGAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4547351 36 - 8658521 ------TTGATACAGA----T-TGTTTTGAA-TATGGAATCA-TGAGAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114750947 37 + 124281992 ------TCAATACAGA----T-TGTTTTGAATTATGGAATCA-TAAGAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 396134 36 - 9212255 ------TCAATACAGA----T-TGTTTTGAA-TATGGAATCA-TAAGAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2809365 36 + 4466143 ------TCAATACAGG----T-TGTTTTGAA-TATGGAATCA-TAAGAG i cebCap1.NW_016107484v1 C 0 C 0 s mm10.chr5 124769989 37 + 151834684 ------TCAGTGTGGA---TT-TCTTCAGAG-AATGGAATGA-TAGTGG i mm10.chr5 I 402 C 0 s canFam3.chr26 33109053 44 - 38964690 TAAATATTGATACAGC----TGTTTTTTGAA-AATACAATCATTAATAG i canFam3.chr26 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e dasNov3.JH568189 781079 196 - 1116856 I e otoGar3.GL873618 4240346 792 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=1569320.000000 s hg38.chr12_KI270834v1_alt 6174 157 + 119498 GCATATCATTTTGTAATTTG-GTTTTTGTG----ACAGTAGAGTAAGCACA-GGGGCAGAATCTCATAACTgtgcagacttcgggggcagactgtggggtttagaccctgtttctggggctcagtagc-tgag----------------cttcatgtct---gag-ccccagttgccatctctg s panTro5.chr12 127292253 157 + 137163284 GCATATCATTTTGTAATTTG-GTTTTTGTG----TGAGTAGAGTAAGCACA-GGGGCAGGATCTCATAACTgtgcagacttcgggggcagactgtggggtttagaccctgtttctggggctcagtagc-tgag----------------cttcatgtct---gag-ccccagttgccatctctg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125643300 157 + 135337776 GCATATCATTTTGTAATTTG-GTTTTTGTG----TGAGTAGAGTAAGCACA-GGGGCAGGATCTCATAACTgtgcagacttcgggggcagactgtggggtttagaccctgtttctggggctcagtagc-tgag----------------cttcatgtct---gag-ccccagttgccatctctg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8156169 154 - 8369578 GCATATCATTTTGTAATTTG-G-TTTTGTG----ACAGTAGAGTAAGCACA-GGGGCAGGATCTCATAACTgtgcagacttcgggggcagactgtggggtttagacc--gtttctggggctcagtagc-tgag----------------cttcatgtct---gag-ccccagttgccatctctg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97804334 157 + 106955855 GCATATCATTTTGTAATTTG-GTTTTTGTG----ACAGTAGAGTAAGCACA-GGGGCAGGATCTCATAACTgtgcagacttcaggggcagactgtggggtttagaccctgtttctggggctcagtagc-tgag----------------cttcatgtct---gag-cctcagttgccatctctg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123862348 157 + 133663169 ACATATCATTTTGTAATTTG-TTTTTTGTG----ACAGTAGAGTAAGCACA-GGGGCAGGATCTCATAACTgtgcaggcttcgggggcagactgtggagtttagatcctgtttctggggctcagtagc-taag----------------cctcatgtct---gag-tcccagttgccatctctg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128170546 157 + 137757926 ACATATCATTTTGTAATTTG-TTTTTTGTG----ACAGTAGAGTAAGCACA-GGGGCAGGATCTCATAACTgtgcaggcttcgggggcagactgtggagtttagatcctgtttctggggctcagtagc-taag----------------cctcatgtct---gag-tcccagttgccatctctg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10575652 157 - 16319837 ACATATCATTTTGTAATTTG-TTTTTTGTG----ACAGTAGAGTAAGCACA-GGGGCAGGATCTCATAACTgtgcaggcttcaggggcagactgtggagtttagatcctgtttctggggctcagtagc-taag----------------cctcatgtct---gag-tcccagttgccatctctg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12197807 157 + 20526591 ACATATCATTTTGTAATTTG-TTTTTTGTG----ACAGTAGAGTAAGCACA-GGGGCAGGATCTCATAACTgtgcaggcttcgggggcagactgtggagtttagatcctgtttctggggctcagtagc-taag----------------cctcatgtct---gag-tcccagttgccatccctg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119170724 158 + 128539186 ACATATCGTTTTGTAATTTGTTTTTTTGTG----ACAGTAGAGTAAGCACA-GGGACAGGAACTCATAACTgtgcaggcttcgggggcagactgtggggtttagatcctgtttctggggctcagtagc-taag----------------gctcatgtct---gag-tcccagttgccatctctg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 483647 157 + 6255621 ACATATCATTTTGTAATTTG-TTTTTTGTG----ACAGTAGAGTAAGCACA-GGGGCAGGATCTCATAACTgtgcaggcttcgggggcagactgtggagtttagatcctgtttctggggctcagtagc-taag----------------cctcatgtct---gag-tcccagttgccatctctg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4547387 157 - 8658521 ACATATCATTTTGTAATTTG-TTTTTTGTG----ACAGTAGAGTAAGCACA-GGGGCAGGATCTCATAACTgtgcaggcttcgggggcagactgtggggtttagatcctgtttctggggctcagtagt-taag----------------cctcatgtct---gag-tcccagttgccatctctg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114750984 160 + 124281992 GCCTGTCATTTTGTAATTTG-GTTTTCATG----ACCGTGGAGTAAGCACA-GGGGCAGGATCCCGTAACTgtgcagactctgggagctgactgtggggtttagaccctgtttctggggctcggtaac-tgag----------------cttcatgtctcttgag-cctcagttgccatttctg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 396170 160 - 9212255 GCCTATCATTTTGTAATTTG-GTTTTCTAG----ACAGTAAAGTAAGCACA-GGGACAGGATCCCATAACTgtgcagactctgggagcagactgtaggatttagaccctgtttctggggcttggcaac-tgag----------------cttcatgtctcttgag-cctcagttgccatctctg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2809401 159 + 4466143 GCCTATCATTTTGTAATTTG-GTTTTCTAG----ACAGTAAAGTAAGCACA-GGGGCAGGATCCCATAACTgtgcagactccgggagcagactgtggggtttagaccctgtttct-gggctcggtaac-tgag----------------cttcatgtttctcgag-cctcagttgccatctctg i cebCap1.NW_016107484v1 C 0 C 0 s mm10.chr5 124770026 143 + 151834684 GCTTTGCATTTTGAATATGG-ACTTTCTCGCTCAGCAGTGGAGTGAGCACA-GGG-CAAGACCCCCTGGTTGAATAGG----------AAGCTGCTGGGTTGAGACACCAGTTTTGGTATTTGGCAGC---AT----------------CCCCA--------GGA-CCCCACGTGGCCTTTCTG i mm10.chr5 C 0 I 51 s canFam3.chr26 33109097 153 - 38964690 GCATATTACTTTGTGATCTG-ATTTTCTTT----GCTTAATGGTAAACATA-GGGGTAGGATCGCACAG-GGGGCAG-----GGaggtggactaggaaatttagaccttggttctggtgctgagtgacctgac----------------caagctctct---gagaacccagtacccatctcta i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 781275 178 - 1116856 GCATATTATTTTGTCATTTG-ATTTTCTTGCTTAACAGTAGAGTAAGCCCACTGGGCAAGATCGCATACGTGTGCAgagtctggaggcagactgtggaatttagaccctgtttctggtactcagtagc-tgagtggacttgacaaactacttcatgcct---gag-tcctagtttccttctctg i dasNov3.JH568189 I 196 C 0 e micMur3.chr21 9421851 133 - 31815103 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e otoGar3.GL873618 4240346 792 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=417004.000000 s hg38.chr12_KI270834v1_alt 6331 52 + 119498 taaaatgtgggtgataataatccctaccaatatactttgaggtatttgcttt s panTro5.chr12 127292410 52 + 137163284 taaaatgtgggtgataataatccctaccaatatactttgaggtatttgcttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125643457 52 + 135337776 taaaatgtgggtgataataatccctaccaatatactttgaggtatttgcttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8156323 52 - 8369578 taaaatgtgggtgataataatccctaccaatatactttgaggtatttgcttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97804491 52 + 106955855 taaaatgtgggtaataataatccctaccaatatactttgaggtatttgtttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123862505 48 + 133663169 taaaatgtgggtgataataatc----ccaatataatttgaggtatttgcttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128170703 48 + 137757926 taaaatgtgggtgataataatc----ccaatataatttgaggtatttgcttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10575809 48 - 16319837 taaaatgtgggtgataataatc----ccaatataatttgaggtatttgcttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12197964 48 + 20526591 taaaatgtgggtgataataatc----ccaatataatttgaggtatttgcttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119170882 52 + 128539186 taaaatgtgggtgataataatccctaccaatataatttgaggtatttgcttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 483804 48 + 6255621 taaaatgtgggtgataataatc----ccaatataatttgaggtatttgcttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4547544 52 - 8658521 taaaatgtgggtgataataatccctaccaatataatttgaggtatttgcttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114751144 52 + 124281992 taaaatgtgggtgataataatccctaccacaatactttgaagtatttgcttc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 396330 49 - 9212255 taaaatgtgggtg---ataatccctaccacaatactttgaagtatttgcttc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2809560 52 + 4466143 taaaatgtgggtgataataatccctaccacaatactttgaagtatttgcttc i cebCap1.NW_016107484v1 C 0 C 0 s canFam3.chr26 33109250 40 - 38964690 taaaatgtgggtaataatcctt------------atttcactaagctgcttt i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 781453 21 - 1116856 -----------taaaaacactc-----------------agg---ttgtttt i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e mm10.chr5 124770169 51 + 151834684 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e otoGar3.GL873618 4240346 792 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=176937.000000 s hg38.chr12_KI270834v1_alt 6383 19 + 119498 gaggactgaatgagatcgt s panTro5.chr12 127292462 19 + 137163284 gaggactgaatgagattgt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125643509 19 + 135337776 gaggactgaatgagattgt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8156375 19 - 8369578 gaggactgaatgagatggt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97804543 19 + 106955855 gaggactgaatgagatcat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123862553 19 + 133663169 gaagactgaatgagatcat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128170751 19 + 137757926 gaagactgaatgagatcat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10575857 19 - 16319837 gaagactgaatgagatcac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12198012 19 + 20526591 gaagactgaatgagatcat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119170934 19 + 128539186 gaagactgaatgagatcat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 483852 19 + 6255621 gaagactgaatgagatcat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4547596 19 - 8658521 gaagactgaatgagatcat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114751196 19 + 124281992 gaggactgaatgagatcgc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 396379 19 - 9212255 aaggactgaatgagatcgc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2809612 19 + 4466143 gaggactgaatgacatcgc i cebCap1.NW_016107484v1 C 0 C 0 s mm10.chr5 124770220 17 + 151834684 GAGGGTCAGATGAGATC-- i mm10.chr5 I 51 C 0 s canFam3.chr26 33109290 15 - 38964690 ---gacagaaggcaatcc- i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 781474 19 - 1116856 ggagactaaaggagatcaa i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e proCoq1.NW_012154285v1 6673987 1193 - 9870158 I e otoGar3.GL873618 4240346 792 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=12492.000000 s hg38.chr12_KI270834v1_alt 6402 2 + 119498 gt s panTro5.chr12 127292481 2 + 137163284 gt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125643528 2 + 135337776 gt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8156394 2 - 8369578 gt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97804562 2 + 106955855 gt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123862572 2 + 133663169 gt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128170770 2 + 137757926 gt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10575876 2 - 16319837 at i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12198031 2 + 20526591 gt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119170953 2 + 128539186 gt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 483871 2 + 6255621 gt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4547615 2 - 8658521 gt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114751215 2 + 124281992 gt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 396398 2 - 9212255 at i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2809631 2 + 4466143 gt i cebCap1.NW_016107484v1 C 0 C 0 s proCoq1.NW_012154285v1 6675180 2 - 9870158 GT i proCoq1.NW_012154285v1 I 1193 C 0 s canFam3.chr26 33109306 1 - 38964690 a- i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 781493 2 - 1116856 gc i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e mm10.chr5 124770237 0 + 151834684 C e otoGar3.GL873618 4240346 792 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=1875305.000000 s hg38.chr12_KI270834v1_alt 6404 165 + 119498 atgtgacatgcttacctgccacatagcgaat-----gcttgataagt--gg--caattattaCCATGACAGAATCCCAAC---TT-TTCAGGAA---------ACAGACCCAGGACTCCG-A-----TTGCATTGTTGGCCAAAAG---CAAGCTAAGGAAGGTGTTTTTGGGTTGGGG-CTCGGTCCTTTCAGTTC s panTro5.chr12 127292483 165 + 137163284 atgtgacatgcttacctgccacatagcgaat-----gcttgataagt--ga--caattattaCCATGACAGAATTCCAAC---TT-TTCAGGAA---------ACAGACCCAGGACTCCG-A-----TTGCGTTGTTGGCCAAAAG---CAAGCTAAGGAAGGTGTTTTTGGGTTGGGG-CTCGGTCCTTTCAGTTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125643530 165 + 135337776 atgtgacatgcttacctgccacatagcgaat-----gcttgataagt--ga--caattattaCCATGACAGAATTCCAAC---TT-TTCAGGAA---------ACAGACCCAGGACTCCG-A-----TTGCGTTGTTGGCCAAAAG---CAAGCTAAGGAAGGTGTTTTTGGGTTGGGG-CTCAGTCCTTTCAGTTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8156396 165 - 8369578 atgtgacatgcttacctgccacatagtgaat-----gcttgataagt--ga--caattattaCCATGACAGAATCCCAAC---TT-TTCAGGAA---------ACAGACCCAGGACTCCG-A-----TTGCGTTGTTGGCCAAAAG---CAAGCTAAGGAAGGTGTTTTTGGGTTGGGG-CTCGGTCCTTTCAGTTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97804564 165 + 106955855 atgtgacatgcttacctgccacatagcaaat-----gcttgataagt--ga--ctattattaCCATGACAGAATCCTAAC---TT-TTCAGGAA---------GCAGACCCAGGACTTCG-A-----TTGCGTTGTTGGCCAAAAG---CAAGCTAAGGAAGGTGTTTTTGGGTTGGGG-CTCGGTCTTTTCAGTTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123862574 165 + 133663169 atgtgacatgcttacctgccacatagcaaat-----gcttgataagt--ga--ctattattACCATGACAGAATCCCAAC---TT-TTCAGGAA---------ACAGACCCAGGACTCCA-A-----TTGCGTTGTTGGCCAAAAG---CAAGCTAAGGCCGGTGTTTTTGGGTTGGGG-CTTGGTCTTTTCAGTTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128170772 165 + 137757926 atgtgacatgcttacctgccacatagcaaat-----gcttgataagt--ga--ctattattACCATGACAGAATCCCAAC---TT-TTCAGGAA---------ACAGACCCAGGACTCCA-A-----TTGCGTTGTTGGCCAAAAG---CAAGCTAAGGCAGGTGTTTTTGGGTTGGGG-CTTGGTCTTTTCAGTTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10575878 165 - 16319837 atgtgacatgcttacctgccacatagcaaat-----gcttgataagt--ga--ctattattaCCATGACAGAATCCCAAC---TT-TTCAGGAA---------ACAGACCCAGGACTCCA-A-----TTGCGTTGTTGGCCAAAAG---CAAGCTAAGGCAGGTGTTTTTGGGTTGGGG-CTTGGTCTTTTCAGTTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12198033 165 + 20526591 atgtgacatacttacctgccacatagcaaat-----gcttgataagt--ga--ctattattACCATGACAGAATCCCAAC---TT-TTCAGGAA---------ACAGACCCAGGACTCCA-A-----TTGCGTTGTTGGCCAAAAG---CAAGCTAAGGCAGGTGTTTTTGGGTTGGGG-CTTGGTCTTTTCAGTTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119170955 165 + 128539186 atgtgacatgcttacctgccacatagcaaat-----gcttgataagt--ga--ctattattACCATGATAGAATCCCAAC---TT-TTCAGGAA---------ACAGACCCAGGACTCCA-A-----CTGCATTGTTAGCCAAGAG---CAAGCTAAGGCAGGTGTTTTTGGGTTGGGG-CTCGGTCTTTTCGGTTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 483873 165 + 6255621 atgtgacatgcttacctgccacatagcaaat-----gcttgataagt--ga--ctattattACCATGACAGAATCCCAAC---TT-TTCAGGAA---------ACAGACCCAGGACTCCA-A-----TTGCGTTGTTGGCCAAAAG---CAAGCTAAGGCAGGTGTTTTTGGGTTGGGG-CTTGGTCTTTTCAGTTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4547617 165 - 8658521 atgtgacatgcttacctgccacatagcaaat-----gcttgataggt--ga--ctattattACCATGACAGAATCCCAAC---TT-TTCAGGAA---------ACAGACCCAGGACTCCA-A-----TTGCGTTGTTAGCCAAAAG---CAAGCTAAGGCAGGTGTTTCTGGGTTGGGG-CTCGGTCTTTTCAGTTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114751217 165 + 124281992 atgtgacacgcttacctgctacgtagcaaat-----gcttaataaat--ga--ctgttatGACCATGACAGAATCCCGAC---TT-TTCAGGAG---------ACAGACCCGGGACTCCG-A-----TTGCGTTGTTGGCCAGAAG---CGAGCTGAGGAAGGTGTTTAGGGGTTGGGG-CTTGCTCTTTACAGTTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 396400 165 - 9212255 atgtgacatgcctacctgctacatagcaaat-----gcttaataaat--ga--ctgttatGACCATGACAGAATCCCGAC---TT-TTCAGGAA---------ACAGACCCAGGACTCTG-A-----ATGCGTTGTTGGCCAGAAG---CAAGCTAAGGAAGATGTTTTGGGGTTGGGG-CTTGCTCTTTACAGTTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2809633 164 + 4466143 atgtgacatgcttacctgctacatagcaaat-----gcttaatgaat--ga--ctgttaCGACCATGGCAGAATCCCGAC---TT-TTCAGGAA---------ACAGACCCAGGACTCCG-A-----TTGCGTTGTTGGCCGGAAG---CAAGCGAAGGAAGGCGTGT-GGGGCTGGGG-CTTGCTCCTCACAGCTC i cebCap1.NW_016107484v1 C 0 C 0 s proCoq1.NW_012154285v1 6675182 157 - 9870158 atgtaacacgcgtacctggcacatagcaaat-----gcttgatgagt--ga--ctattattaCCATGACACAGTCTCGAC---TT-TTCAGGAA---------ACTGATCCAGAACTCTG-G-----TTTTATTGCTG-----------CAAGCGAAGGAAGTTGCTGTTGGGTTGGGA-TTCTGTCTTTCCCATTT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4241138 175 + 7922563 ATGTAACATGCTCACCTGGCATGCAGCAAAT-----GCTTGATGAAT--GA--CTGTTACTACTATGACAGAATCTTGACTTTTT-TTTAGGACTGATCCAGTTCTGATCTAGAACTCTGAA-----ATGAACTGTTGGTCAGAGA---CAAGCTAAGGAGGT---TGTTGGGTTTGGT-GTCCGTCTTTCCAGTTT i otoGar3.GL873618 I 792 C 0 s mm10.chr5 124770237 160 + 151834684 ------------------CCACATGGCAGACTGTGAGCCTGGTGGACAGGA--ACACTCTTGCTGTGG-AGAATCTCAAC---TT-CTCCTGTG---------ATTGAGCTGGGACAATA-AATAGGTTGAGTTGCAGACAGATGGTGACACACTAGGGAGGAGGTGGCTCTGTTAGGGTCTTGATCTT--CAATCT i mm10.chr5 C 0 C 0 s canFam3.chr26 33109307 167 - 38964690 atgcaatgtgcttacctggcacacagcaagt-----gcttggtaagt--gatGTTGGGGTCACCATGACAGAGTTTCTAC---TT-ACCGGAAA---------ACTGACCCTGACTCTGG-G-----TTGAGCAACTGACCAAAGG---CAAGCTCAGGGAGTTGCTATTGGGTTGGGA-TTTTGTTTTTCCAATGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 781495 139 - 1116856 --------------------acctgacagat-----gcttaatacaT--AA--CTATTATTATCATAACAGAATCT--AC---TTATTAAGAAA---------AGTGAACCAGGACACTGGG-----TCGAAGAGTTGGTCAAAGG---CATGCTAAAG------TTGTTGGATGGGGG-TTCAGTTTCTTCAATTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9421851 133 - 31815103 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=4903330.000000 s hg38.chr12_KI270834v1_alt 6569 283 + 119498 GTGTGCCTGAATCATTC---------TTTTTCTATTCCTGAACAGGCTGTGAAGGAAATCCTAGACACGTGGGAAAATATGAAATTCACTGTAGTCAAGTATTGCAAAGGCACACAGGAGCGAGGCTACATCCTGGGTTCTGTTGACGAAATTATTCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACGCTTTCTCTAATAGGGGAAGTCATTGAGGTGAGAGAAAAGA- s panTro5.chr12 127292648 283 + 137163284 GTGTGCCTGAATCATTC---------TTTTTCTATTCCTGAACAGGCTGTGAAGGAAATCCTAGACACGTGGGAAAATATGAAATTCAGTGTAGTCAAGTATTGCAAAGGCACACAGGAGCGAGGCTACATCCTGGGTTCTGTTGACGAAATTATTCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACGCTTTCCCTAATAGGGGAAGTCATTGAGGTGAGAGAAAAGA- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125643695 283 + 135337776 GTGTGCCTGAATCATTC---------TTTTTCTATTCCTGAACAGGCTGTGAAGGAAATCCTAGACACGTGGGAAAATATGAAATTCACTGTAGTCAAGTATTGCAAAGGCACACAGGAGCGAGGCTACATCCTGGGTTCTGTTGACGAAATTATTCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACGCTTTCTCTAATAGGGGAAGTCATTGAGGTGAGAGAAAAGA- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8156561 283 - 8369578 GTGTGCCTGAATCATTC---------TTTTTCTATTCCTGAACAGGCTGTGAAGGAAATCCTAGACACGTGGGAAAATATGAAATTCACTGTAGTCAAGTATTGCAAAGGCACACAGGAGCGAGGCTACATCCTGGGTTCTGTTGACGAAATTATTCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACGCTTTCTCTAATAGGGGAAGTCATTGAGGTGAGAGAAAAGA- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97804729 283 + 106955855 GTGTGCCTGAATCATTC---------TTTTTCTATTCCTGAACAGGCTGTGAAGGAAATCCTAGACATGTGGGAAAATATGAAATTCACTGTAGTCAAGTATTACAAAGGCACACAGGAGCGAGGCTACATCCTGGGTTCTGTTGATGAAATTATTCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATTTCAGGAAGCAGATTTGTGGGGCCTTTTTTGCAAACTGTTCAGAAATGGGAAAAAACGCTTTCTTTAATAGGGGAAGTCATTGAGGTGAGAGAAAAGA- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123862739 283 + 133663169 GTGTACCTGAATCATTC---------TTTTTCTATTCCTGAACAGGCTGTGAAGGAAATCCTAGACACGTGGGAAAATATGAAATTCACTGTAGTCAAGTATTACAAAGGCACACAGGAGCGAGGCTACATCCTGGGTTCTGTTGACGAAATTATTCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACGCTTTCTCTAATAGGAGAAGTCATTGAGGTGAGAGAAAAGA- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128170937 283 + 137757926 GTGTACCTGAATCATTC---------TTTTTCTATTCCTGAACAGGCTGTGAAGGAAATCCTAGACACGTGGGAAAATATGAAATTCACTGTAGTCAAGTATTACAAAGGCACACAGGAGCGAGGCTACATCCTGGGTTCTGTTGACGAAATTATTCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACGCTTTCTCTAATAGGAGAAGTCATTGAGGTGAGAGAAAAGA- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10576043 283 - 16319837 GTGTACCTGAATCATTC---------TTTTTCTATTCCTGAACAGGCTGTGAAGGAAATCCTAGACACGTGGGAAAATATGAAATTCACTGTAGTCAAGTATTACAAAGGCACACAGGAGCGAGGCTACATCCTGGGTTCTGTTGACGAAATTATTCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACGCTTTCTCTAATAGGAGAAGTCATTGAGGTGAGAGAAAAGA- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12198198 283 + 20526591 GTGTACCTGAATCATTC---------TTTTTCTATTCCTGAACAGGCTGTGAAGGAAATCCTAGACACGTGGGAAAATATGAAATTCACTGTAGTCAAGTATTACAAAGGCACACAGGAGCGAGGCTACATCCTGGGTTCTGTTGACGAAATTATTCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACGCTTTCTCTAATAGGAGAAGTCATTGAGGTGAGAAAAAAGA- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119171120 282 + 128539186 GTGTGCCTGAATCATTC---------TTTTT-TGTTCCTGAACAGGCTGTGAAGGAAATCCTAGACACGTGGGAAAATATGAAATTCACTGTAGTCAAGTATTACAAAGGCACACAGGAGCGAGGCTACATCCTGGGTTCTGTTGACGAAATTATTCAGACTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACGCTTTCTCTAATAGGAGAAGTCATTGAGGTGAGAGAAAAGA- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484038 283 + 6255621 GTGTACCTGAATCATTC---------TTTTTCTATTCCTGAACAGGCTGTGAAGGAAATCCTAGACACGTGGGAAAATATGAAATTCACTGTAGTCAAGTATTACAAAGGCACACAGGAGCGAGGCTACATCCTGGGTTCTGTTGACGAAATTATTCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTCCTGCAAACTGTTCACAAATGGGAAAAAACGCTTTCTCTAATAGGAGAAGTCATTGAGGTGAGAGAAAAGA- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4547782 283 - 8658521 ATGTGCCTGAATCATTC---------TTTTTCTATTCCTGAACAGGCTGTGAAGGAAATCCTAGACACATGGGAAAATATGAAATTCACTGTAGTCAAGTATTACAAAGGCACACAGGAGCGAGGCTACATCCTGGGTTCTGTTGACGAAATTATTCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACGCTTTCTCTAATAGGAGAAGTCATTGAGGTGAGAGAAAAGA- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114751382 292 + 124281992 GCGTGCCTGAATCATTCTTACTAGTCTTTTTCTATTCCTGACCAGGCTGTGAAGGAAATCCTAGACACTTGGGAAAATATGAAATTCACCGTAGTCAAGTATTACAAAGGCACCCAGGAGCGGGGCTACATCCTGGGTTCCACTGATGAAATTATCCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTGCACAAGTGGGAAAAAACACTTTCTCTAATAGGGGAAGTCATTGAGGTGAGAGAAAAGA- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 396565 292 - 9212255 GTGTGCCTGAATCATTCTTATCATTCTTTTTCTATTCCTGACCAGGCTGTGAAGGAAATCCTAGACACTTGGGAAAATATGAAATTCACCGTAGTCAAGTATTACAAAGGCACCCAGGAGCGGGGCTACATCCTGGGTTCCGTCGATGAAATTATCCAGTGTCTTGATGATAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTGCACAAATGGGAAAAAACGCTTTCTCTAATAGGGGAAGTCATTGAGGTGAGAGAAAAGA- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2809797 291 + 4466143 GTGCGCCTGAATCATTCTTATCATT-GTTTTAAATTCCTGACCAGGCTGTGAAGGAAATCCTAGACACTTGGGAAAACATGAAATTCACCGTAGTCAAGTATCACAAAGGCACCCAGGAGCGGGGCTACATCCTGGGTTCCGTTGATGAAATTATCCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCGGGAAGCAGATTTGTGGGACCTTTTCTGCAAACTGTGCACAAATGGGAAAAAACGCTTTCTCTAATAGGGGAAGTCATTGAGGTGAGAGAAAAGA- i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9421984 283 - 31815103 GTGTGTCTGAATCATTC---------TTTTTCCGTCCCTGACCAGGCTGTGAAGGAAATCCTGGACACGTGGGAAAACATGAAATTCACCGTGGTCAAGTATTACAAAGGCACGCAGGAGCGAGGCTACATTTTGGGCTCTGTTGATGAAATTATTCAGTCCCTTGATGACAACACTTTCAACCTGCAAAGCATCTCAGGAAGCAGATTCGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACCCTTTCTCTAATTGGGGAAATTATTGAGGTGAGAGAAAAGA- i micMur3.chr21 I 133 I 42 s proCoq1.NW_012154285v1 6675339 283 - 9870158 GTGTGTCTGAATCATTT---------GTTTTCTGTTCCTGACCAGGCTGTGAAGGAAATCCTGGACACGTGGGAAAACATGAAATTCACTGTGGTCAAGTATTACAAAGGCACGCAGGAGCGAGGCTACATTTTGGGCTCTGTTGATGAAATTATTCAGTCTCTCGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACACTTTCTCTAATAGGGGAAGTTATTGAGGTGAGTGAAGACA- i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4241313 283 + 7922563 ACCTGTCTGAATCCTTC---------TTTTTCTGTTCCTGACCAGGCTGTGAAGGAAATCCTGGACACGTGGGAAAACATGAAATTCTCTGTGATCAAATATTACAAAGGCACACAGGAGCGAGGCTACATTTTGGGCTCTGTTGATGAGATTATTCAGAGTCTTGATGACAATACTTTCAACCTGCAAAGCATCTCAGGAAGTAGATTTGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACACTTTCTCTCATTGGAGAAGTTATTGAGGTGAGAGAAAAGA- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124770397 283 + 151834684 GTGGGCTTGAATGTTTT---------TTTTCATTTCTCCAACCAGGCCGTGAAGGAAATCCTAGACACCTGGGAGAACATGAAGTTCACCGTGGTCAAGTACTACAAAGGCACGCAGGAGCGAGGCTACATCTTGGGGTCCGTGGACGACATCATCCAGTGCTTGGACGACAACACAGTCAACTTGCAGAGCATCTCCGGGAGCAGATTCGTGGGGCCTTTCCTGCAAACCGTCCACAAGTGGGAGAAGACACTGTCTCTGATAGGCGAGGTCATTGAGGTGAGGGCAAAGA- i mm10.chr5 C 0 C 0 s canFam3.chr26 33109474 284 - 38964690 CTGTGCCCAAACTTCTCT--------TTTTTATATTCCTGACCAGGCTGTGAAGGAAATCCTGGACACGTGGGAAAGTATGAAGTTTGCTGTGGTCAAGTATTTCAAAGGCACACAGGAGCGAGGCTACATTTTGGGGTCTGTCGATGAAATCATCCAGTGTCTTGATGACAACACTGTCAACCTGCAAAGCATCTCGGGAAGCAGATTTGTGGGGCCTTTTCTTCAAACTGTTCACAAATGGGAAAAAACGCTTTCTCTGATAGGGGAAGTCATTGAGGTGAGAGAAAAGT- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 781634 284 - 1116856 TTGTGCCCAAATCATTC---------TTTTTTCATTCCTGCCCAGGCCGTGAAGGAAATTCTGGACACGTGGGAAAATATGAAATTCACTGTGGTTAAGTACTATAAAGGCACTCAGGAGCGAGGCTACATCTTGGGGTCTGTTGATGACATTATTCAGTGCCTTGATGATAACACTTTCAACCTGCAAAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAGACTGTTCACAAATGGGAAAAAAAACTTTCTGTAATTGGGGAAGTTATTGAGGTGAGGAAAAAAAG i dasNov3.JH568189 C 0 C 0 e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=369519.000000 s hg38.chr12_KI270834v1_alt 6852 35 + 119498 TGAA--CAAAAGATGGATTAGAGCCAGTGCATAGCAG s panTro5.chr12 127292931 35 + 137163284 TGAA--CAAAAGATGGATTAGAGCCAGTGCATAGCAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125643978 35 + 135337776 TGAA--CAAAAGATGGATTAGAGCCAGTGCATAGCAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8156844 35 - 8369578 TGAA--CAAAAGATGGATTAGAGCCAGTGCATAGCAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805012 35 + 106955855 TGAA--CAAAAGATGGATTAGGGCCAGTGCATAGCAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123863022 35 + 133663169 TGAA--CAAAAGATGGATTAGAGCCAGTGCATAGCAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128171220 35 + 137757926 TGAA--CAAAAGATGGATTAGAGCCAGTGCATAGCAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10576326 35 - 16319837 TGAA--CAAAAGATGGATTACAGCCAGTGCATAGCAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12198481 35 + 20526591 TGAA--CAAAAGATGAATTAGAGCCAGTGCATAGCAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119171402 35 + 128539186 TGAA--CAAAAGATGGATTAGAGCCAGTGCATAGCAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484321 35 + 6255621 TGAA--CAAAAGATGGATTAGAGCCAGTGCATAGCAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548065 35 - 8658521 TGAA--CAAAAGATGGATTAGAGCCAGTGCATAGCAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114751674 35 + 124281992 TGAA--CAAAAGATGGGTTACAGCCAGTGCATAGCAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 396857 35 - 9212255 TGAA--CAAAAGATGGGTTTCAGCCAGTGCATAGCAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810088 35 + 4466143 TGAA--CAAAAGATGGCTTACAGCCAGTGCATAGCAG i cebCap1.NW_016107484v1 C 0 I 3 s proCoq1.NW_012154285v1 6675622 32 - 9870158 -GAA---AAAAAATGGATTAGAGCCAA-TCATAGCAG i proCoq1.NW_012154285v1 C 0 I 3 s otoGar3.GL873618 4241596 37 + 7922563 CGAAAGCAAAAGATGGATTAGAGCCAATTCACAGCAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124770680 21 + 151834684 -AAA--CAGAAAGCACACT---GCCAG---------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33109758 4 - 38964690 ---------AGGA------------------------ i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 781918 35 - 1116856 TCAA--AAAAGGGTTGATTAGAGACAGTTAATTGCAG i dasNov3.JH568189 C 0 I 3 e micMur3.chr21 9422267 42 - 31815103 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=82005.000000 s hg38.chr12_KI270834v1_alt 6887 25 + 119498 TGGCTTTTATATGAGGATATTTTGT s panTro5.chr12 127292966 25 + 137163284 TGGCTTTTATATGAGGATATTTTGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644013 25 + 135337776 TGGCTTTTATATGAGGATATTTTGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8156879 25 - 8369578 TGGCTTTTATATGAGGATATTTTGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805047 25 + 106955855 TGGCTTTTATATGAGGATATTTTGT i nomLeu3.chr10 C 0 I 315 s rheMac8.chr11 123863057 24 + 133663169 TGG-TTTTATAGGAGGATATTTTGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128171255 24 + 137757926 TGG-TTTTATAGGAGGATATTTTGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10576361 24 - 16319837 TGG-TTTTATAGGAGGATATTTTGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12198516 25 + 20526591 TGGCTTTTATAGGAGGATATTTTGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119171437 25 + 128539186 TGGCTTATATATGAGGATATTTTGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484356 25 + 6255621 TGGCTTTTATAGGAGGATATTTTGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548100 25 - 8658521 TAGCTTATATATAAGGATATTTTGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114751709 3 + 124281992 --------------GAA-------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 396892 3 - 9212255 --------------GAA-------- i saiBol1.JH378194 C 0 C 0 s otoGar3.GL873618 4241633 3 + 7922563 --------------GAA-------- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124770701 5 + 151834684 --------------------TTTCT i mm10.chr5 C 0 C 0 e micMur3.chr21 9422267 42 - 31815103 I e proCoq1.NW_012154285v1 6675654 3 - 9870158 I e dasNov3.JH568189 781953 3 - 1116856 I e canFam3.chr26 33109762 0 - 38964690 C e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I e cebCap1.NW_016107484v1 2810123 3 + 4466143 I a score=18723.000000 s hg38.chr12_KI270834v1_alt 6912 4 + 119498 GCTT s panTro5.chr12 127292991 4 + 137163284 GTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644038 4 + 135337776 GTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8156904 4 - 8369578 GCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805387 4 + 106955855 GCTT i nomLeu3.chr10 I 315 C 0 s rheMac8.chr11 123863081 4 + 133663169 GCTT i rheMac8.chr11 C 0 I 321 s macFas5.chr11 128171279 4 + 137757926 GCTT i macFas5.chr11 C 0 I 321 s macNem1.NW_012010578v1 10576385 4 - 16319837 GCTT i macNem1.NW_012010578v1 C 0 I 312 s cerAty1.NW_012001186v1 12198541 4 + 20526591 GCTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119171462 4 + 128539186 GCTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484381 4 + 6255621 GCTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548125 4 - 8658521 GCTT i colAng1.NW_012116043v1 C 0 C 0 s mm10.chr5 124770706 2 + 151834684 GC-- i mm10.chr5 C 0 C 0 s canFam3.chr26 33109762 1 - 38964690 ---T i canFam3.chr26 C 0 C 0 e micMur3.chr21 9422267 42 - 31815103 I e proCoq1.NW_012154285v1 6675654 3 - 9870158 I e dasNov3.JH568189 781953 3 - 1116856 I e otoGar3.GL873618 4241636 0 + 7922563 C e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I e cebCap1.NW_016107484v1 2810123 3 + 4466143 I e saiBol1.JH378194 396895 0 - 9212255 C e calJac3.chr9 114751712 0 + 124281992 C a score=764991.000000 s hg38.chr12_KI270834v1_alt 6916 60 + 119498 AGAA------------------------------CTTTTATATGAGGATATTTTGTGCTTAGAAACAAATGATCCTCTTTCATA-C-TTTTT s panTro5.chr12 127292995 59 + 137163284 AGAA-------------------------------TTTTATATGAGGATATTTTGTGCTTAGAAACAAATGATCCTCTTTCATA-C-TTTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644042 59 + 135337776 AGAA-------------------------------TTTTATATGAGGATATTTTGTGCTTAGAAACAAATGATCCTCTTTCATA-C-TTTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8156908 90 - 8369578 AGAACTTTTATATGAGGATATTTTGTGCTTAGAACTTTTATATGAGGATATTTTGTGCTTAGAAACAAATGATCCTCTTTCATA-C-TTTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805391 60 + 106955855 AGAA------------------------------CTTTTATATGAGGATATTTTGTGCTTCAAAACAAATGATCCTCTTTCATA-C-TTTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123863406 59 + 133663169 AGAA------------------------------CTTTTATATGAGGATATTTTGTGCTTAGAAACAAATGATCCTCTTTCATG-C--TTTT i rheMac8.chr11 I 321 C 0 s macFas5.chr11 128171604 59 + 137757926 AGAA------------------------------CTTTTATATGAGGATATTTTGTGCTTAGAAACAAATGATCCTCTTTCATG-C--TTTT i macFas5.chr11 I 321 C 0 s macNem1.NW_012010578v1 10576701 59 - 16319837 AGAA------------------------------CTTTTATATGAGGATATTTTGTGCTTAGAAACAAATTATCCTCTTTCATG-C--TTTT i macNem1.NW_012010578v1 I 312 C 0 s cerAty1.NW_012001186v1 12198545 59 + 20526591 AGAA------------------------------CTTTTATATGAGGATATTTTGTGCTTAGAAACAAATGATCCTCTTTCATG-C--TTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119171466 59 + 128539186 AGAA------------------------------CTTTTATGTGAGGATATTTTGTGCTTAGAAACAAATGATCCTCTTTCATG-C--TTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484385 59 + 6255621 AGAA------------------------------CTTTTATATGAGGATATTTTGTGCTTAGAAACAAATGATCCTCTTTCATG-C--CTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548129 60 - 8658521 AGAA------------------------------CTTTTATATGAGGATATTTTGTGCTTAGAAACAAATGATCCTCTTTCATA-C-TTTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114751712 61 + 124281992 AGAA------------------------------CTTTTATATGAGGATATTTGGTGCTTAGAAACAAATGATCCTCTTTCTTATC-TTTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 396895 60 - 9212255 AGAG------------------------------GTTTTATATGAGGATATTTGGTGCTTAGAAACAAATGATCCTCTTTCTTA-C-TTTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810126 60 + 4466143 AGAG------------------------------CTTTTATATGAGGACATTTGGTGCTTAGAAACAAATGATCCTCTTTCTTA-C-TTTTT i cebCap1.NW_016107484v1 I 3 C 0 s micMur3.chr21 9422309 58 - 31815103 AGAA------------------------------CCTCTGTATGAGAATATTTTGTGCTTAGAAACGAATGATCCTCTTTCATA-C---TTT i micMur3.chr21 I 42 C 0 s proCoq1.NW_012154285v1 6675657 58 - 9870158 AGAA------------------------------CCTCTCTATGAGAATATTTTGTGCTTAGAAATGAATGATCCTCTTGCATA-C---TTT i proCoq1.NW_012154285v1 I 3 C 0 s otoGar3.GL873618 4241636 60 + 7922563 AGAG------------------------------CCCTTATGTGAGAATATTTTGTTCTTAGAAATGAACATTCCTCTTTCATA-C-TTTTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124770708 52 + 151834684 AGGG------------------------------ATTCTATACGGGAACATTT-GTACTGAGAAATGAAGGA--CTGTCCCGTG-G------ i mm10.chr5 C 0 C 0 s canFam3.chr26 33109763 61 - 38964690 AGCA------------------------------CTTTCATAGGAGAATATTTTGTGCTCAGTCCCTGGTGATCCTCCAATGTA-CTTTTTC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 781956 60 - 1116856 AGAA------------------------------CCTTTATGTGAGAATATTTTGTACCTAGAAACTAGTGATCTTTTTTCATA-A-CTTTT i dasNov3.JH568189 I 3 I 214 e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=2490568.000000 s hg38.chr12_KI270834v1_alt 6976 185 + 119498 TGTCTTGATTTATTT----TGAGGACAAGAGTGCA-------------------TGATCAAAGGAATTGATCtgaatttttattttagtga--atga-----ttttca-tttccaagattcctaattgcttctttttcata-tatctctgtttttctttgatactgtcctgttcttgttgcaaggatgcttttgcctccttgatgacactgaaaatt s panTro5.chr12 127293054 185 + 137163284 TGTCTTGATTTATTT----TGAGGACAAGAGTGCA-------------------TGATCAAAGGAATTGATCTGAAtttttattttactga--atga-----ttttca-tttccaagattcctaattgcttctttttcata-tatctctgtttttctttgatactgtcctgttcttgttgcaaggatgcttttgcctccttgatgacactgaaaatt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644101 185 + 135337776 TGTCTTGATTTATTT----TGAGGACAAGAGTGCA-------------------TGATCAAAGGAATTGATCTGAAtttttattttactga--atga-----ttttca-tttccaagattcctaattgcttctatttcata-tatctctgtttttctttgatactgtcctgttcttgttgcaAGGATGCTTTTGCCTCCTTGATGACACTGAAAATT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8156998 186 - 8369578 TGTCTTGATTTATTT----TGAGGACAAGAGTGCA-------------------TGATCAAAGGAATTGATCTGAAtttttattttagtga--atga-----ttttca-tttccaagattcctaattgcttctttttcatattatctctgtttttctttgatactgtcctgttcttgttgcaaggatgcttttgcctccttgatgacactgaaaatt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805451 185 + 106955855 TGTCTTGATTTATTT----TGAGGGCAAGAGTGCA-------------------TGCTCAAAGGAATTGATCtgagtttttattttagtga--atga-----ttttca-tttccaagattcctaattgcttctttttcata-tgtctctgtttttctttgatactgtcgtgttcttgttgcaaggatgcttttgcctccttgatgacactgaaaatt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123863465 185 + 133663169 TGTCTTGATTTATTT----TGAGGGCAAGAGCGCA-------------------TGATCAAAGGAATTGATCTAAGtttttattttagtga--atga-----ttttca-tttccaagattcctaattgcttcttttttgta-tatctctgtttttctttgatactgttctgttcttgttgcaaggatgcttttgcctccttgatgacactgaaaatt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128171663 185 + 137757926 TGTCTTGATTTATTT----TGAGGGCAAGAGCGCA-------------------TGATCAAAGGAATTGATCTAAGtttttattttagtga--atga-----ttttca-tttccaagattcctaattgcttcttttttgta-tatctctgtttttctttgatactgttctgttcttgttgcaaggatgcttttgcctccttgatgacactgaaaatt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10576760 185 - 16319837 TGTCTTGATTTATTT----TGAGGGCAAGAGCGCA-------------------TGATCAAAGGAATTGATCTAAGtttttattttagtga--atga-----ttttca-tttccaagattcctaattgcttcttttttgta-tatctctgtttttctttgatactgttctgttcttgttgcaAGGATGCTTTTGCCTCCTTGATGACACTGAAAATT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12198604 185 + 20526591 TGTCTTGATTTATTT----TGAGGGCAAGAGCGCA-------------------TGATCAAAGGAATTGATCTAAGTTTTTATTTTAGTGA--ATGA-----TTTTCA-TTTCCAAGATTCCTAATTGCTTCTTTTTTGTA-TATCTCTGTTTTTCTTTGATACTGTCCTGTTCTTGTTGCAAGGATACTTTTGCCTCCTTGATGACGCTGAAAATT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119171525 185 + 128539186 TGTCTTGATTTATTT----TGAGGGCAAGAGCGCA-------------------CGATCAAAGGAATTGATCTAAGtttttattttagtga--atga-----ttttca-tttccaagattcctaattgcttctttttggta-tatctctctttttctttgatactgtcctgttcttgttgcaaggatgcttttgcctccttgatgacgctgaaaata i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484444 185 + 6255621 TGTCTTGATTTATTT----TGAGGGCAAGAGCGCA-------------------TGATCAAAGGAATTGATCTAAGtttttattttagtga--atga-----ttttca-tttccaagattcctaattgcttcttttttgta-tatatctgtttttctttgatactgtcttgttcttgttgcaaggatgcttttgcctccttgatgacgctgaaaatt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548189 182 - 8658521 TGTCTTGATTTATGT----TGAGGGCAAGAGTGCA-------------------TGATCAAAGGAATTGATCTAAGtttttattttagtga--atga-----ttttca-tttccaagattcttaattgcttctttttcgta-tatctctgtttttctttgatactgtcctgttc---ttgCAAGGATGCTTTTGCCTCCTTGATGATGCTGAAAATT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114751773 185 + 124281992 TGTCTTGATTTATTT----TGAGGGCACAAGTGCA-------------------TGATTAGAGGAATTGATCtgagtttttctttcagggg--atga-----ttttca-tgtccaagattcctaattgcttctttttcatc-tatctctgtttttctttgagactgtcctgttcttgttgcaaggatgcttttgcctccttgatcacactgaacatt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 396955 181 - 9212255 TGTCTTGATTTATTT----TGAGGGCAGAAGTGCA-------------------TTATTAGAGGAATTGATCtgagtttttctttcagtgg--ctga-----ttttca-tttccaagattcctaattgcttctttttcata-tatctctg----tctttgatactgtcctgttcttgttgcaaggatgcttttgcctccttgatcgccctgaaagtt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810186 183 + 4466143 TGTCTTGATTTATTT----CGAGGGCAAAAGTGCA-------------------TGATTAGAGGAATTGATCtgagtttttctttca-tgg--atga-----ttttca-tttccaagattcctaattgcttc-ttttcata-tatctctgtttttctttgatactgtcctgttcttgttgcaAGGATGCTTTTGCCTCCTTGATCACACTGAACATT i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9422367 186 - 31815103 TGTCTTGGTTTATTC----TGGGGAGAGGAGTGTA-------------------TGATTAGAGGAGTCAATCtgagttttaatttagatga--acaa-----tttttagtttccaagattcctaattggttctttttcgta-tgtccctgttcttctttaataccgtcctgttcttgttgcaaggatgctttcacctcctttattacacagaaaatt i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6675715 174 - 9870158 TGTCTT----------------GGAGAGGAGTGCA-------------------TGATTAGAGGAGTTGATCTGACttttaatttcaacga--acga-----tttttagtttccaagattcctaattggttcttttccgta-tgtccctgttcttctttcatactgtcctgttcttgttgcaaggatgctttcacatcctttattacacagaaaatt i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4241696 183 + 7922563 TGTCTTGGTTTATTT----TG-GGGGAGGAGTGTG-------------------CGTCTAGAGTGGTTGATttgatttttaatttcaaaga--atgc-----tttttagttttcaagattcctaattggctctttttcaca-tg--cctgttcttcttttataccgttcctttctttttgcaaggatgctttcacacctttcatcacactgaaaatt i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124770760 180 + 151834684 -CTCTTCACTCAGGTGGGGTGGGGGCAAGGGGGCAGTTGGTGGGGGCAAGGGGGGAGTTGGGGAGACTGA--TGAGTTTTGATTTCAGGGA--ACTAGTAATGTTTTA-TTTCTAAGATTCCTACTTGGCCC--TTTAAAG-CATCCTTGTTCCTTTTTCATAGTG-CCTGTTCTTGTTGCATGAGGGTT--------------------------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33109824 187 - 38964690 TGGCTTGATTTATTT----TGGGGTTGTATGTGCA-------------------TGATTAGAAGAGTCAATCtgaggtttaatttcaatga--atgc---atttttaa-cttccatgattcttaattggttctttcttgta-tgtccctattcttgtttaatactatcctgttcttgttgccaggatactttcacctcctttatctcattgacaaat i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 782230 187 - 1116856 TGTCTTGATTTATTT----TGGGGAGAGGGGTATA-------------------TGAGTAGAGAAGTTAAGCtgagtttttatttcaatgagtatat-----ttttaa-tttccaaacttcctaattggttctttttcata-aatctctattcttgtttaatactgtcctgttcttgttagaagatttttcatacctcctttatcacattgaaaatt i dasNov3.JH568189 I 214 C 0 e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=538793.000000 s hg38.chr12_KI270834v1_alt 7161 47 + 119498 agaaacatacttattttacattccttttc-gatttctctacac--ttttt s panTro5.chr12 127293239 47 + 137163284 agaaacatatttattttacattccttttc-gatttctctacaC--TTTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644286 47 + 135337776 AGAAACATATTTATTTTACATTCCTTTTC-GATTTCTCTACAC--TTTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157184 47 - 8369578 agaaacatatttattttacattccttttc-gatttctctacaC--TTTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805636 48 + 106955855 agaaacatatttattttacattccttttcagatttctccacac--ttttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123863650 46 + 133663169 agaaacat--ttattttacgttccttttcagatttctctacaC--TTTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128171848 48 + 137757926 agaaacat--ttattttacgttccttttcagatttctctacaCTTTTTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10576945 46 - 16319837 AGAAACAT--TTATTTTACGTTCCTTTTCAGATTTCTCTACAC--TTTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12198789 46 + 20526591 AGAAACAT--TTATTTTACGTTCCTTTTCAGATTTCTCTACAC--TTTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119171710 46 + 128539186 agaaacat--ttattttacattccttttcagatttctctacaC--TTTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484629 46 + 6255621 agaaacat--ttattttacgttccttttcagatttctctacaC--TATTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548371 46 - 8658521 AGAAACAT--TTATTTTACATTCCCTTTCAGATTTCTCTACAC--TTGTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114751958 45 + 124281992 cgaaacatatttattttaaattccttttcagattt---tacac--ttttt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397136 48 - 9212255 agaaacatatttattttaaattccttttcagGTTTCGCTACAC--TTTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810369 48 + 4466143 AGAAACATATTTATTTTAAATTTCTTTTCAGATTTCGCTACAC--TTTTT i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9422553 48 - 31815103 gtaaatagatttattttaaagtccttttcaggtttctctatac--ttttt i micMur3.chr21 C 0 I 49 s proCoq1.NW_012154285v1 6675889 48 - 9870158 gtaaacatatttattttaaagtccttttcagatttctctatac--ttttt i proCoq1.NW_012154285v1 C 0 I 53 s otoGar3.GL873618 4241879 43 + 7922563 gtaaacata-----tttaaagtcttcttcagatttctctctac--ttttt i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33110011 42 - 38964690 ttaaacatattta------aagctttttcagatttctccatat--ttatt i canFam3.chr26 C 0 I 33 s dasNov3.JH568189 782417 46 - 1116856 ttaaacat--ttattttaaagtccttttcagatttctctataa--ttttt i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124770940 0 + 151834684 C e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=144423.000000 s hg38.chr12_KI270834v1_alt 7208 27 + 119498 aaa----------------aaaa-----------------tgtctgt-----tgactctctcttg s panTro5.chr12 127293286 27 + 137163284 AAA----------------AAAA-----------------TGTCTGT-----TGACTCTCTCTTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644333 27 + 135337776 AAA----------------AAAA-----------------TGTCTGT-----TGACTCTCTCTTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157231 26 - 8369578 -AA----------------AAAA-----------------TGTCTGT-----TGACTCTCTCTTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805684 26 + 106955855 -aa----------------aaaa-----------------aatctgt-----tgactctctctta i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123863696 27 + 133663169 TTT----------------AAAA-----------------TGCCTGT-----TGACTCTCTCTTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128171896 27 + 137757926 TTT----------------AAAA-----------------TGCCTGT-----TGACTCTCTCTTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10576991 27 - 16319837 TTT----------------AAAA-----------------TGCCTGT-----TGACTCTCTCTTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12198835 27 + 20526591 TTT----------------TAAA-----------------TGCCTGT-----TGACTCTCTCTTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119171756 27 + 128539186 TTT----------------AAAA-----------------TGCCTGT-----TGACTCTCTCTTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484675 27 + 6255621 TTT----------------TAAA-----------------TGCCTGT-----TGACTCTCTCTTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548417 27 - 8658521 TTT----------------TAAA-----------------TGCCTGT-----TGACTCTCTCTTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752003 28 + 124281992 ttttt---------------aaa-----------------tgtctgt-----tgactgtctctta i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397184 31 - 9212255 TTTTTTA------------AAAA-----------------TGTCTGT-----TGACTGTCTCTTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810417 29 + 4466143 TAAAA--------------AAAA-----------------CGTCTGT-----TGACTGTCTCTTA i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4241922 52 + 7922563 ------attttcgtagataagaatttgctgtcattt--tgtttctgt-----ggaccatctctca i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33110086 28 - 38964690 --------------------aaa-----------------tctatgtgtatgtgactatctttca i canFam3.chr26 I 33 C 0 s dasNov3.JH568189 782463 54 - 1116856 ------attttcttaggcaataatttccctcttttttgtgtgtctgc-----tggccatttctca i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9422601 49 - 31815103 I e mm10.chr5 124770940 0 + 151834684 C e proCoq1.NW_012154285v1 6675937 53 - 9870158 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=43264.000000 s hg38.chr12_KI270834v1_alt 7235 3 + 119498 tgg s panTro5.chr12 127293313 3 + 137163284 TGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644360 3 + 135337776 TGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157257 3 - 8369578 TGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805710 3 + 106955855 tgg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123863723 3 + 133663169 TGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128171923 3 + 137757926 TGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577018 3 - 16319837 TGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12198862 3 + 20526591 TGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119171783 3 + 128539186 TGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484702 3 + 6255621 TGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548444 3 - 8658521 TGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752031 3 + 124281992 tgg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397215 3 - 9212255 CGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810446 3 + 4466143 TGG i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9422650 3 - 31815103 tgg i micMur3.chr21 I 49 C 0 s otoGar3.GL873618 4241974 3 + 7922563 cgg i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33110114 3 - 38964690 tga i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 782517 3 - 1116856 tgg i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124770940 0 + 151834684 C e proCoq1.NW_012154285v1 6675937 53 - 9870158 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=653755.000000 s hg38.chr12_KI270834v1_alt 7238 65 + 119498 tggtggattttcctctgtgtgattttga--tttttttttctag-ctcatctCACATGTAG--------------------------------TTTTTTTC- s panTro5.chr12 127293316 65 + 137163284 TGGTGGATTTTCCTCTGTGTGATTTTGA--TTTTTTTTTCTAG-CTCATCTCACATGTAG--------------------------------TTTTTTTC- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644363 64 + 135337776 TGGTGGATTTTCCTCTGTGTGATTTTGA---TTTTTTTTCTAG-CTCATCTCACATGTAG--------------------------------TTTTTTTC- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157260 65 - 8369578 TGGTGGATTTTCCTCTGTGTGATTTTGA--TTTTTTTTTCTAG-CTCATCTCACATGTAG--------------------------------TTTTTTTC- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805713 67 + 106955855 taatgagttttcctctgtgtgattttgattttTTTTTTTCTAG-CTCATCTCACATGTAG--------------------------------TTTTTTTC- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123863726 97 + 133663169 TGGTGGGTTTTCCTCTGTGTGATTTTGA--TTTTTTTTTCTAG-CTCATCTCACATGTATTTTTTTTTTCTAGCTCATCTCACATGTATTTTTTTTTTTC- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128171926 97 + 137757926 TGGTGGGTTTTCCTCTGTGTGATTTTGA--TTTTTTTTTCTAG-CTCATCTCACATGTATTTTTTTTTTCTAGCTCATCTCACATGTATTTTTTTTTTTC- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577021 96 - 16319837 TGGTGGGTTTTCCTCTGTGTGATTTTGA--TTTTTTTTTCTAG-CTCATCTCACATGTATTTTTTTTTTCTAGCTCATCTCACATGTA-TTTTTTTTTTC- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12198865 68 + 20526591 TGGTGGGTTTTCCTCTGTGTGATTTTGA--TTTTTTTTTCTAG-CTCATCTCACATGTAT-----------------------------TTTTTTTTTTC- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119171786 66 + 128539186 TGGTGGGTTTTCCTCTGTGTGATTTTGA--TTTTTTTTTCTAG-CTCATCTCACATGTAT-------------------------------TTTTTTTTC- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484705 66 + 6255621 TGGTGGGTTTTCCTCTGTGTGATTTTGA--TTTTTTTTTCTAG-CTCATCTCACATGTAT-------------------------------TTTTTTTTC- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548447 67 - 8658521 TGGTGGGTTTTCCTCTGTGTGATTTTGG--TTTTTTTTTCTAG-CTCATCTCACACGTAT------------------------------TTTTTTTTTC- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752034 58 + 124281992 ---tgggttttcctctgcgtgattt------tTTTTTTCCTAG-CTCATCTCACGTGAAT--------------------------------TCTTTTTC- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397218 62 - 9212255 ---TGGGTTTTCCTCCGTGGGATTTTGG--GTTTCTTTTCTAG-CTCATCTCACATGACT--------------------------------TCTGTTTC- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810449 62 + 4466143 ---TGGGTTTTCCTCCGCGTGATTTTGT--TTTTTTTTCCTAG-CTCATCTCACATTAAT--------------------------------TCTTTTTC- i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9422653 62 - 31815103 tggtgggttttcctctgtgtgattttga--ttGTCTT---TAG-TTCATCACACATAAAG--------------------------------TTTTTTCC- i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6675990 63 - 9870158 tggtggcttttcctctgtgtgattttga--tgatttt---tagtttCATCACACATAAAG--------------------------------TTTTCTCC- i proCoq1.NW_012154285v1 I 53 C 0 s otoGar3.GL873618 4241977 62 + 7922563 tgctgggttttcctctgtgtgattttga--taatttt---tag-tttgtctcacatgaag--------------------------------tacttttg- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33110117 58 - 38964690 tagtgggtttttctc----tgatCt-----attatttttaaaa-ttaatcttacataaat--------------------------------ttttttGC- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 782520 65 - 1116856 ttgtgggtttttctctatgc-actgtga--ttttTTTTCTTAG-TTCTTGTTATTTACAG--------------------------------TTTCTTTTC i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124770940 0 + 151834684 C e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=395105.000000 s hg38.chr12_KI270834v1_alt 7303 28 + 119498 TTGTGTTTGCTTCACTTTGTCATCTGTT s panTro5.chr12 127293381 28 + 137163284 TTGTGTTTGCTTCACTTTGTCATCTGTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644427 28 + 135337776 TTGTGTTTGCTTCACTTTGTCATCTGTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157325 28 - 8369578 TTGTGTTTGCTTCACTTTGTCATCTGTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805780 28 + 106955855 TTGTGTTTGCTTCACTTTGTCATCTGTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123863823 28 + 133663169 TTGTATTTGCTTCACTTTGTCATCTGTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128172023 28 + 137757926 TTGTATTTGCTTCACTTTGTCATCTGTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577117 28 - 16319837 TTGTATTTGCTTCACTTTGTCATCTGTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12198933 28 + 20526591 TTGTGTTTGCTTCACTTTGTCATCTGTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119171852 28 + 128539186 TTGTGTTTACTTCACTTTGTCATCTGTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484771 28 + 6255621 TTGTGTTTGCTTCACTTTGTCATCTGTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548514 28 - 8658521 TTGTGTTTGCTTCACTTTGTCATCTGTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752092 28 + 124281992 TTGTATCTGCTTCACTGTGTCATCTGTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397280 28 - 9212255 TTGTATCTGCTTCACTTTGTCACCTGTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810511 28 + 4466143 TTGTATCTGCTTCACTTTGTCGTCTGTT i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9422715 28 - 31815103 TTGTCCTTGCATCACTTTGTCATCTACT i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6676053 28 - 9870158 CTGTGCTTGCATCACTGTGTCTTCTGCT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4242039 28 + 7922563 ttgtgtttgcatttctTCGTAACCTGCT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124770940 17 + 151834684 TTATGTTT-----------TCATCTGCC i mm10.chr5 C 0 C 0 s canFam3.chr26 33110175 28 - 38964690 CTGTGCTTGCTTCACTTCATCATGTGTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 782585 28 - 1116856 CTGTGCTTGTTTCCTTTGGTCATGTGTT i dasNov3.JH568189 C 0 I 512 e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=283132.000000 s hg38.chr12_KI270834v1_alt 7331 20 + 119498 TTTGCAGCCTCTTTAACCTG s panTro5.chr12 127293409 20 + 137163284 TTTGCAGCCTCTTTAACCTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644455 20 + 135337776 TTTGCAGCCTCTTTAACCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157353 20 - 8369578 TTTGCAGCCTCTTTAACCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805808 20 + 106955855 TTTGCAGCCTCTTTAACTTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123863851 20 + 133663169 TTTGCAGCCTCTTTAATCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128172051 20 + 137757926 TTTGCAGCCTCTTTAACCTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577145 20 - 16319837 TTTGCAGCCTCTTTAACCTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12198961 20 + 20526591 TTTGCAGCCTCTTTAACCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119171880 20 + 128539186 TTTGCAGCCTCTTTAACCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484799 20 + 6255621 TTTGCAGCCTCTTTAACCTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548542 20 - 8658521 CTTGCAGCCTCTTTAACCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752120 20 + 124281992 TCTGCAGCCTCTCTAACCTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397308 20 - 9212255 TTTGCGGCCTCTCTAACCTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810539 20 + 4466143 TTTGCAGCCTCTCTAACCTG i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9422743 20 - 31815103 TTTGCAGTCTGTCTAACCTG i micMur3.chr21 C 0 I 68 s proCoq1.NW_012154285v1 6676081 20 - 9870158 TTTGCGGTCTCTCTAACCTG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4242067 19 + 7922563 TTTGCAGTCTCTCTAACCT- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124770957 19 + 151834684 TTTGCAGTCTCTCCAGCCT- i mm10.chr5 C 0 C 0 s canFam3.chr26 33110203 19 - 38964690 TCTGTAGTTTTTCCAAGTT- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 783125 20 - 1116856 TTTGAAGTTTTTCCAGTTTA i dasNov3.JH568189 I 512 C 0 e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=739302.000000 s hg38.chr12_KI270834v1_alt 7351 58 + 119498 AGGCCTGTCACACTGGGAAGT----AGCA----AGGTCTTATAGTAGGTGGTTTGGGGCTTTCTTC s panTro5.chr12 127293429 58 + 137163284 AGGCCTGTCACACTGGGAAGT----AGCA----AGGTCTTATAGTAGGTGGTTTGGGGCTTTCTTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644475 58 + 135337776 AGGCCTGTCACACTGGGAAGT----AGCA----AGGTCTTATAGTAGGTGGTTTGGGGCTTTCTTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157373 58 - 8369578 AGGCCTGTCACACTGGGAAGT----AGCA----AGGTCTTATAGTAGGTGGTTTGGGGCTTTCTTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805828 58 + 106955855 AGGCCTGTCACACTGGGAAGT----AGCA----AGGCCTTATAGTAGGTGGTTTGGGGCTTTCTTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123863871 58 + 133663169 GGGCCTGTCACACTGGGAAGT----AGCA----AGGTCTTATAGTAGGTGATTTGGGGCTTTCTTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128172071 58 + 137757926 GGGCCTGTCACACTGGGAAGT----AGCA----AGGTCTTATAGTAGGTGATTTGGGGCTTTCTTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577165 58 - 16319837 GGGCCTGTCACACTGGGAAGT----AGCA----AGGTCTTATAGTAGGTGATTTGGGGCTTTCTTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12198981 58 + 20526591 GGGCCTGTCACACTGGGAAGT----AGCA----AGGTCTTATAGTAGGTGATTTGGGGCTTTCTTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119171900 58 + 128539186 GGGCCTGTCACACTGGGAAGT----AGCA----AGGTCTTATAGTAGGTGGTTTGGGGCTTTCTTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484819 58 + 6255621 GGGCCTGTCACACTGGGAAGT----AGCA----AGGTCTTATAGTAGGTGATTTGGGGCTTTCTTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548562 58 - 8658521 GGGCCTGTCACACTGGGAAGT----AGCA----AGGTCTTATAGTAGGTGGTTTGGGGCTTTCTTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752140 58 + 124281992 GGGCCTGCCACACTGGGGAGT----AGCA----AGGTCTTCTAGGAGGTGGTTTGGGGCTTTCTTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397328 58 - 9212255 GGGCCTGTCACACTGGGAAGC----AGCA----AGGTCTTCTAATAGGTGGTTTGGGGCTTTCTTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810559 58 + 4466143 GGGCCTGTCACACTGGGAAGT----AGCA----AGGTCTTCTAGTAGGCGGTTTGGGGCTTTCTTC i cebCap1.NW_016107484v1 C 0 C 0 s proCoq1.NW_012154285v1 6676101 56 - 9870158 --GCCTGTCACATTGGGAAGC----ACCA----AAGTCTTATATTAGGTGCTCTGGGGCCTTCTTC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4242086 57 + 7922563 -GGCCTGTTCCACTGGGAAAC----ACCA----GAATCTTATATTAGGTGCTTTGAAGCTTTCTTC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124770976 34 + 151834684 -GGCCTGTCACACTGGGTGGT----GGGT----CAGTCCTGTG----------------------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33110222 60 - 38964690 -GGCCTGTCATAGTGGACAAC----ACCAAACCAGGTCTTATATTAGGTGGCTTG-GGCTTTCTTC i canFam3.chr26 C 0 I 180 s dasNov3.JH568189 783145 56 - 1116856 --GTCCATC---CGGGGCAGCTCTAGACA----AGGTCTTAGATTAGATGGTTTG-GGCTTTCTTC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9422763 68 - 31815103 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=277029.000000 s hg38.chr12_KI270834v1_alt 7409 23 + 119498 CTTT-TGGGCAATACTTATCCAGA s panTro5.chr12 127293487 23 + 137163284 CTTT-TGGGCAATACTTGTCCAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644533 23 + 135337776 CTTT-TGGGCAATACTTGTCCAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157431 23 - 8369578 CTTT-TGGGCAATACTTGTCCAGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805886 23 + 106955855 CTTT-TGGGCAATACTTGTCCAGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123863929 23 + 133663169 CTTT-TGGGCAACACTTGTCCAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128172129 23 + 137757926 CTTT-TGGGCAACACTTGTCCAGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577223 23 - 16319837 CTTT-TGGGCAACAGTTGTCCAGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12199039 23 + 20526591 CTTT-TGGGCAACACTTGTCCAGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119171958 23 + 128539186 CTTT-TGGGCAACACTTGTCCAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484877 23 + 6255621 CTTT-TGGGCAACACTTGTCCAGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548620 23 - 8658521 CTTT-TGGGCAACACTTGTCCAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752198 23 + 124281992 CTTT-TGGTCAATACTTGTCCAGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397386 23 - 9212255 CTTT-TGGGCAATACTTGTCCAGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810617 23 + 4466143 CTTT-TGGGCAATGCTTGCCCAGA i cebCap1.NW_016107484v1 C 0 C 0 s proCoq1.NW_012154285v1 6676157 24 - 9870158 CTTTGTGGACGAGACTAGTCCAGA i proCoq1.NW_012154285v1 C 0 I 1 s otoGar3.GL873618 4242143 24 + 7922563 CTTTGTGAAAAATACTGGTCCAGA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124771010 19 + 151834684 -----CCATCAGTGCTGAACTAGG i mm10.chr5 C 0 C 0 s canFam3.chr26 33110462 23 - 38964690 CTTG-TGGGAAATACTAGTCCAGA i canFam3.chr26 I 180 C 0 s dasNov3.JH568189 783201 24 - 1116856 CTCTGTGGGATATGCTAGTTCAGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9422763 68 - 31815103 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=1191828.000000 s hg38.chr12_KI270834v1_alt 7432 83 + 119498 CCTCTGTGAGCAACC---------CAGGCTCACTGCACCATTTTTGTGCAGTTGCC----TTTTTTTCCTCCCCAGACCACAGGCAAGCACCTTGT s panTro5.chr12 127293510 82 + 137163284 CCTCTGTGAGCAACC---------CAGGCTCACTGCACCATTTTTGTGCGGTTGCC----TTTTTTTCCTCCC-AGACCACAGGCAAGCACCTTGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644556 82 + 135337776 CCTCTGTGAGCAACC---------CAGGCTCACTGCACCATTTTTGTGCGGTTGCC----TTTTTTTCCTCCC-AGACCACAGGCAAGCACCTTGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157454 83 - 8369578 CCTCTGTGAGCAACC---------CAGGCTCACTGCACCATTTTTGTGCGGTTGCC----TTTTTTTCCTCCCCAGACCACAGGCAAGCACCTTGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805909 83 + 106955855 CCTCTGTGAGCAACC---------CAGGCTCACTGCACCATTTTTGTGTGGTTGCC----TTTTTTTCCTCCCCAGACCACAGGCAAGCACCTTGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123863952 83 + 133663169 CCTCTGTGAGCAACC---------CAGGCTCACTGCACCATTTTTGTGCAGTTGCC----TTTTTTTCCTCCCCAGACCACAGGCAAGCACCTTGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128172152 83 + 137757926 CCTCTGTGAGCAACC---------CAGGCTCACTGCACCATTTTTGTGCAATTGCC----TTTTTTTCCTCCCCAGACCACAGGCAAGCACCTTGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577246 83 - 16319837 CCTCTGTGAGCAACC---------CAGGCTCACTGCACCATTTTTGTGCAGTTGCC----TTTTTTTCCTCCCCAGACCACAGGCAAGCACCTTGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12199062 83 + 20526591 CCTCTGTGAGCAACC---------CAGGCTCACTGCACCATTTTTGTGCAGTTGCC----TTTTTTTCCTCCCCAGACCACAGGCAAGCACCTTGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119171981 83 + 128539186 CGTCTGTGAGCAACC---------CAGGCTCACTGCACCATTTTTGTGCAGTTGCC----TTTTTTTCCTCCCCAGACCACAGGCAAGCACCTTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484900 83 + 6255621 CCTCTGTGAGCAACC---------CAGGCTCACTGCACCATTTTTGTGCAGCTGCC----TTTTTTTTCCTCCCAGACCACAGGCAAGCACCTTGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548643 83 - 8658521 CCTCTGTGAGCAACC---------CAGGCTCACTGCACCATTTTTGTGCAGTTGCC----TTTTTTTCCTCCCCAGACCACAGGCAAGCACCTTGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752221 82 + 124281992 CCTCTCTGAGCAACC---------CAGGCT-ACTGCACCATTTTTGTGTGGTTGAC----TTTTTTTCCTCCCCAGACCATGGGCAGACACTTTGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397409 81 - 9212255 CCTCTCTGGCT--CC---------CAGGCTCACTGCACCATTTTTGTGTGGTTGAC----TTTTTTTCCTCCCCAGACCACGGGCAAGCACTTTGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810640 83 + 4466143 CCTCTCTGAGCAACC---------CAGGCTCACTGCACCATTTTTGTGTGCTTGGC----TTTTTTTCCTCCCCAGACCACGGGCAAGCACTTTGT i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9422831 82 - 31815103 CCTCTGTGAGCAACC---------TAGGCTCATTTCACCATTTTTGGGTGGCTGCC----TTTT-TTCCTGCCCAGACCACAGGCAAGCACCCTGT i micMur3.chr21 I 68 C 0 s proCoq1.NW_012154285v1 6676182 82 - 9870158 CCTCTGTGAGCAACC---------TGGGCTCATTTCACCATTTTCGGGTGGCTGCC----TTTT-TTCCTGCCCAGACCACAGGCAGGCACCTTGT i proCoq1.NW_012154285v1 I 1 I 1073 s otoGar3.GL873618 4242167 82 + 7922563 CCTCTGTGAGCAACC----------AGGCTCACTTTGCCATGTTTGTGTGGTTGCC----TTTTATTCCTCCCCAGACCACAGATAAGCACCTTGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124771029 95 + 151834684 CCTCTGTGAACAGCCCAGATCAGTCAGGCTCAGTTCACTATCTCTGAGTGGCTGGTTTGGTTTTTTTTCTCCCCAGACCATAGATAAGCATATTT- i mm10.chr5 C 0 C 0 s canFam3.chr26 33110485 77 - 38964690 CTTCTGTGAGCAACC---------CAGGCTCATCTCACCATTTTTGTGTGGCTGCC----TCTTTTCCCTCCCCAGACCACAGGGG------TTGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 783225 77 - 1116856 CCCCTGGGAGCAACC----------AGAATTGGCTCACCAT-TTTGCACGACTGGC----TTTG----CTCCCCAGGTCACAGGCAAGGGGCTCAT i dasNov3.JH568189 C 0 C 0 e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=17290.000000 s hg38.chr12_KI270834v1_alt 7515 1 + 119498 T s panTro5.chr12 127293592 1 + 137163284 T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644638 1 + 135337776 T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157537 1 - 8369578 T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805992 1 + 106955855 T i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123864035 1 + 133663169 T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128172235 1 + 137757926 T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577329 1 - 16319837 T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12199145 1 + 20526591 T i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119172064 1 + 128539186 T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484983 1 + 6255621 T i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548726 1 - 8658521 T i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752303 1 + 124281992 T i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397490 1 - 9212255 T i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810723 1 + 4466143 T i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9422913 1 - 31815103 T i micMur3.chr21 C 0 I 78 s otoGar3.GL873618 4242249 1 + 7922563 T i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124771124 1 + 151834684 T i mm10.chr5 C 0 C 0 s canFam3.chr26 33110562 1 - 38964690 T i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 783302 1 - 1116856 T i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=708372.000000 s hg38.chr12_KI270834v1_alt 7516 71 + 119498 TTTGGCCAC-AATCCAAGCCTTGGGTGGGATGAAGCCAGGCCTGGTTCACTGGCCAAC-TGTGTG------AT-CAGGCC------ s panTro5.chr12 127293593 71 + 137163284 TTTGGCCAC-AATCCAAGCCTTGGGTGGGATGAAGCCAGGCCTGGTTCACTGGCCAAC-TGTGTG------AT-CAGGCC------ i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644639 71 + 135337776 TTTGGCCAC-AATCCAAGCCTTGGGTGGGATGAAGCCAGGCCTGGTTCACTGGCCAAC-TGTGTG------AT-CAGGCC------ i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157538 70 - 8369578 TTTGGCCAC-AATCCAAGCCTTGGGTGGGATGAAGCCAGGCCT-GTTCACTGGCCAAC-TGTGTG------AT-CAGGCC------ i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97805993 71 + 106955855 TTTGGCCAC-AATCCAAGCCTTGGGTGGGATGAAGCCAGGCCTGGTTCACTGGCCAAC-TGTGTG------AT-CGGGCC------ i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123864036 71 + 133663169 TTTGGCCAC-AATCCAAGCTTTGGGTGGGATGAAGCCAGGTCTGGTTCACCGGCCAAG-TGTGTG------AT-CAGGCC------ i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128172236 71 + 137757926 TTTGGCCAC-AATCCAAGCTTTGGGTGGGATGAAGCCAGGTCTGGTTTACCGGCCAAG-TGTGTG------AT-CAGGCC------ i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577330 71 - 16319837 TTTGGCCAC-AATCCAAGCTTTGGGTGGGATGAAGCCAGGTCTGGTTCACCGGCCAAG-TGTGTG------AT-CAGGCC------ i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12199146 71 + 20526591 TTTGGCCAC-AATCCAAGCTTTGGGTGGGATGAAGCCAGGTCTGGTTCACCGGCCAAG-TGTGTG------AT-CAGGCC------ i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119172065 71 + 128539186 TTTGGCCAC-AATCCAAGCCTTGGGTGGGATGAAGCCAGGTCTGGTTCACCGGCCAAG-TGTGTG------AT-CAGGCC------ i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 484984 71 + 6255621 TTTGGCCAT-AATCCAAGCTTTGGGTGGGATGAAGCCAGGTCTGGTTCACCGGCCAAG-TATGTG------AT-CAGGCC------ i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548727 71 - 8658521 TTTGGCCAC-AATCCAAGCCTTGGGTGGGATGAAGCCAGGTCTGGTTCACTGGCCAAG-TGTGTG------AT-CAGGCC------ i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752304 72 + 124281992 CTTGGCTAC-AACCCAAGCCTTGGGTGGGACGAAGCCAGGCCTGGTTCCCTGGCCAGG-TGTGAG------ATCTGGGCC------ i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397491 72 - 9212255 CTTGGCTAC-AGCCCAAACCTTGGGTGGGACGAAGCCAGGCCTGGTTCCCTGGCCAGG-TGTGAG------ATCCGGGCC------ i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810724 73 + 4466143 CTTGGCTACAAACCCAAGTCTTGGGCGGGACGAAGCCAGGCCTGGTTCCCTGGCCAGG-TGTGAG------ATTCGGGCC------ i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4242250 72 + 7922563 GCCGTTCAC-AGCCAGAGCTTTGGGTGGGATGATGCCTTGCCTAGTTCTCTGGCTGGA-GGTGTG------ATTCAGGCC------ i otoGar3.GL873618 C 0 I 7 s mm10.chr5 124771125 45 + 151834684 CTCATTCAT-A----------------------------TCCTGGTTCTCTGGCAAAGAAACATG------ATTCTGGCC------ i mm10.chr5 C 0 I 5 s canFam3.chr26 33110563 72 - 38964690 CTAGGCCAC-AACTTGAGTTTTGGGTGGGATGATACCAACACTGGTTCACTGGCTAGG-GATGTG------GTCCAAGCC------ i canFam3.chr26 C 0 I 6 s dasNov3.JH568189 783303 83 - 1116856 TCTGACCAC-ATCCCAAACTTTGGGTAGG-TAGTTCCAGACCTGACTCCCCAGCTCTG-AGTGTGGAGTGCATCCCGGCCCTGGCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9422914 78 - 31815103 I e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=403600.000000 s hg38.chr12_KI270834v1_alt 7587 33 + 119498 -TCCATCATGCCTGGGCT-TCCTTTCCTTGCT----------TT-T s panTro5.chr12 127293664 33 + 137163284 -TCCATCATGCCTGGGCT-TCCTTTCCTTGCT----------TT-T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644710 33 + 135337776 -TCCATCATGCCTGGGTT-TCCTTTCCttgct----------tt-t i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157608 32 - 8369578 -TCCATCATGCCTGGGCT-TCCTTTCCTTGC-----------TT-T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97806064 33 + 106955855 -TCCATCATGCCTGGGCT-TCCTTTCCTTGCT----------TT-T i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123864107 33 + 133663169 -TCCATCATGCCTGGGCT-TCCTTGCCTTGCT----------TT-T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128172307 33 + 137757926 -TCCATCATGCCTGGGCT-TCCTTGCCTTGCT----------TT-T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577401 33 - 16319837 -TCCATCATGCCTGGGCT-TCCTTGCCTTGCT----------TT-T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12199217 33 + 20526591 -TCCATCATGCCTGGGCT-TCCTTGCCTTGCT----------TT-T i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119172136 33 + 128539186 -TCCATCATGCCTGGGCT-TCCTTGCCttgct----------tt-t i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 485055 33 + 6255621 -TCCATCATGCCTGGGCT-TCCTTGCCTTGCT----------TT-T i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548798 33 - 8658521 -TCCATCGTGCCTGGGCT-TCCTTGCCTTGCT----------TT-T i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752376 34 + 124281992 -TCCATCATGCCTGGGCT-TCCTTGCCTTGCT----------TTGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397563 34 - 9212255 -TCCATCATGCCTGGGCT-TCTTGGCCTTGCT----------TTGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810797 34 + 4466143 -TCCGTGATGCCTGGGCT-TCCttgccttgct----------ttgt i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9422992 33 - 31815103 -TCCATCATGCCTGGGCT-TCCTTGGCTTGCT----------TT-T i micMur3.chr21 I 78 I 723 s otoGar3.GL873618 4242329 30 + 7922563 -CCCATCATACCTGGGCT-TCCTTGGCTTGCT-------------- i otoGar3.GL873618 I 7 C 0 s mm10.chr5 124771175 43 + 151834684 -TCCGTCATGTTTGAACA-TCCTTGGCTTGCTGTGCTTGgtttt-t i mm10.chr5 I 5 I 4 s canFam3.chr26 33110641 33 - 38964690 -GCTCTCAAGCATGGGCT-TCCTTTGCttgct----------tt-t i canFam3.chr26 I 6 C 0 s dasNov3.JH568189 783386 35 - 1116856 TCCGGGCATGCAATGGCTGCCCTCACCTCGTT----------TT-T i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=240423.000000 s hg38.chr12_KI270834v1_alt 7620 26 + 119498 TTG----TTTGTTT--GTTTTGTCTATGACTT s panTro5.chr12 127293697 26 + 137163284 TTG----TTTGTTT--GTTTTGTCTATGACTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644743 26 + 135337776 ttg----tttgttt--gtttTGTCTATGACTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157640 26 - 8369578 TTG----TTTGTTT--GTTTTGTCTATGACTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97806097 26 + 106955855 TTG----TTTGTTT--GTTTTGTCTATGACTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123864140 30 + 133663169 TTGTTCATTTGTTT--GTTTTGTCTATGACTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128172340 30 + 137757926 TTGTTCATTTGTTT--GTTTTGTCTATGACTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577434 30 - 16319837 TTGTTCATTTGTTT--GTTTTGTCTATGACTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12199250 30 + 20526591 TTGTTCATTTGTTT--GTTTTGTCTATGACTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119172169 30 + 128539186 ttgttcgtttgttt--gtttTGTCTATGACTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 485088 30 + 6255621 TTGTTCATTTGTTT--GTTTTGTCTATGACTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548831 30 - 8658521 TTGTTCATTTGTTT--GTTTTGTCTATGACTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752410 21 + 124281992 TTG----TTTC-------TTTGTCTATAACTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397597 26 - 9212255 TTG----TTTCTTT--GTTTTGTCTATAACTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810831 26 + 4466143 ttg----tttcttt--gttttgtctgtaactt i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4242359 25 + 7922563 TTG----TTTATTT--G-TTTATCTGTGACTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124771222 27 + 151834684 ttgtt--tttgttt---ttTTGCCTTTGCCTT i mm10.chr5 I 4 C 0 s canFam3.chr26 33110674 17 - 38964690 -------------t--tttttgtctattactt i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 783421 28 - 1116856 TTT----TTtttttaagatttattttttattt i dasNov3.JH568189 C 0 I 394 e micMur3.chr21 9423025 723 - 31815103 I e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=84546.000000 s hg38.chr12_KI270834v1_alt 7646 8 + 119498 TGTGTTAG s panTro5.chr12 127293723 8 + 137163284 TGTGTTAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644769 8 + 135337776 TGTGTTAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157666 8 - 8369578 TGTGTTAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97806123 8 + 106955855 TGTGTTAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123864170 8 + 133663169 TGTGTTAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128172370 8 + 137757926 TGTGTTAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577464 8 - 16319837 TGTGTTAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12199280 8 + 20526591 TGTGTTAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119172199 8 + 128539186 TGTGTTAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 485118 8 + 6255621 TGTGTTAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548861 8 - 8658521 TGTGTTAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752431 8 + 124281992 TGTGTTAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397623 8 - 9212255 TGTGTTAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810857 8 + 4466143 tgtGTTAG i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4242384 8 + 7922563 TTTATTCG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124771249 8 + 151834684 TTTATTTG i mm10.chr5 C 0 C 0 s canFam3.chr26 33110691 8 - 38964690 taaattag i canFam3.chr26 C 0 I 594 e micMur3.chr21 9423025 723 - 31815103 I e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I e dasNov3.JH568189 783449 394 - 1116856 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=529643.000000 s hg38.chr12_KI270834v1_alt 7654 64 + 119498 TGGAAGCTCTTATGTGG------GATATAGCACTGTTTT-----------------------------------------------TTAATTTGTGAGTAAAAAACAA-------ttttttttt s panTro5.chr12 127293731 61 + 137163284 TGGAAGCTCTTATGTGG------GATATAGCACTGTTTT-----------------------------------------------TTAATTTGTGAGTTAAAAA----------ttttttttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644777 61 + 135337776 TGGAAGCTCTTATGTGG------GATATAGCACTGTTTT-----------------------------------------------TTAATTTGTGAGTTAAAAA----------ttttttttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157674 64 - 8369578 TGGAAGCTCTTATGTGG------GATATAACACTGTTTT-----------------------------------------------TTAATTTGTGAGTTAAAAACAA-------ttttttttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97806131 64 + 106955855 TGGAAGCTCTTATGTGG------GATATAGCACTGTTTT-----------------------------------------------TTAATTTGTGAGTTAAAACAAt-------ttttgtttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123864178 64 + 133663169 TGGAAGCTCTTATGTGG------GATATAGCACTGTTTT-----------------------------------------------TTAATTTGTGAGTTAAAAACAA-------ttttttttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128172378 64 + 137757926 TGGAAGCTCTTATGTGG------GATATAGCACTGTTTT-----------------------------------------------TTAATTTGTGAGTTAAAAACAA-------ttttttttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577472 64 - 16319837 TGGAAGCTCTTATGTGG------GATATAGCACTGTTTT-----------------------------------------------TTAATTTGTGAGTTAAAAACAA-------ttttttttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12199288 64 + 20526591 TGGAAGCTCTTATGTGG------GATATAGCACTGTTTT-----------------------------------------------TTAATTTGTGAGTTAAAAACAA-------ttttttttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119172207 64 + 128539186 TGGAAGTTCTTATGTGG------GATATAGCACTGTTTT-----------------------------------------------TTAATTTGTGAGTTAAAAACAA-------ttttttttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 485126 64 + 6255621 TGGAAGCTCTTATGTGG------GATATAGCACTGTTTT-----------------------------------------------TTAATTTGTGAGTTAAAAACAA-------tttttttta i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548869 63 - 8658521 TGGAAGCTCATATGTGG------GATATAGCATGGTTTT-----------------------------------------------TTAATTTGTGAGTT-AAAACCA-------ttttttttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752439 65 + 124281992 TGGAAGCTCTTATGTAG------GATACAGCACTGTTTT-----------------------------------------------TTAATTTGTGAGTTAAAAATAA------tttttttttt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397631 71 - 9212255 TGGAAGCTCTTCTGTAG------GATATAGCACTGTTTT-----------------------------------------------TTAATTTGTGAGTTAAAAATAAtttttttttttttttt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810865 66 + 4466143 TGGAAGCTCTTGTGTAG------GATATAGCACTGTTTT-----------------------------------------------TTAATTTGTGAGTTAAAAATAA-----ttttttttttt i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4242392 44 + 7922563 TGGAAGCTCTGATGTAGAATACAAATACAGCGCTATTGT-----------------------------------------------TTTCT--------------------------------- i otoGar3.GL873618 C 0 I 20 s mm10.chr5 124771257 105 + 151834684 TGAAAGCTCTTTTGAAG------GGCATAGTTTtgttgttgttggtagtggtggtggtgatagtggtagtggtgtgtatgtatgtgtttgtgtgtgtgtgta-------------tgtTTTTTC i mm10.chr5 C 0 C 0 e micMur3.chr21 9423025 723 - 31815103 I e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I e dasNov3.JH568189 783449 394 - 1116856 I e canFam3.chr26 33110699 594 - 38964690 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=225822.000000 s hg38.chr12_KI270834v1_alt 7718 29 + 119498 ---agatggagtct-------------------------------------tgctctgtcacccaggct s panTro5.chr12 127293792 29 + 137163284 ---agatggagtct-------------------------------------tgctctgtcacccaggct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644838 29 + 135337776 ---agatggagtct-------------------------------------tgctctgtcacccaggct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157738 29 - 8369578 ---agatggagtct-------------------------------------tgctctgtcacccaggct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97806195 29 + 106955855 ---agatggagtct-------------------------------------tgctctgtcacccaggct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123864242 29 + 133663169 ---agatgcagtct-------------------------------------tgctctgttgcccaggtt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128172442 29 + 137757926 ---agatgcagtct-------------------------------------tgctctgttgcccaggtt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577536 29 - 16319837 ---agatgcagtct-------------------------------------tgctctgttgcccaggtt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12199352 29 + 20526591 ---agatgcagtct-------------------------------------tgctctgttgcccaggtt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119172271 29 + 128539186 ---agatgcagtct-------------------------------------tgctctgttgcccaggtt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 485190 29 + 6255621 ---agatgcagtct-------------------------------------tgctctgttgcccaggtt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548932 29 - 8658521 ---agatggagtct-------------------------------------tgctctgtcgcccaggtt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752504 29 + 124281992 ---agacggagtct-------------------------------------tgctctgtcacccaggtg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397702 29 - 9212255 ---agacacagtct-------------------------------------tgctctgtcacccaggtg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810931 29 + 4466143 ---agacggagtct-------------------------------------tgtcctgtcacctgggtg i cebCap1.NW_016107484v1 C 0 C 0 s mm10.chr5 124771362 69 + 151834684 AggggattgaacctagggtctcatgtatgcaaggtaaactttctttaccactgagctatctccccagcT i mm10.chr5 C 0 I 227 e micMur3.chr21 9423025 723 - 31815103 I e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I e dasNov3.JH568189 783449 394 - 1116856 I e canFam3.chr26 33110699 594 - 38964690 I e otoGar3.GL873618 4242436 20 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=468239.000000 s hg38.chr12_KI270834v1_alt 7747 52 + 119498 ggagtgcagtggtgccatctcggctcattgcaacctctgccagccggattca s panTro5.chr12 127293821 52 + 137163284 ggagtgcagtggtgccatctcggctcattgcaacctctgccagccgggttca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644867 52 + 135337776 ggagtgcagtggtgccatctcggctcattgcaacctctgccagccgggttca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157767 52 - 8369578 ggagtgccgtggtgccatctcggctcattgcaacctctgccagccgggttca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97806224 52 + 106955855 ggagtgcagtggtgccatcttggctcactgcaacctctgccagccgggttca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123864271 52 + 133663169 ggagtgcggtggtgccatctcggctcactgcaacctctgccagctgagttca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128172471 52 + 137757926 ggagtgcagtggtgccatctcggctcactgcaacctctgccagctgagttca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577565 52 - 16319837 ggagtgcagtggtgccatctcggctcactgcaacctctgccagctgagttca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12199381 52 + 20526591 ggagtgcagtggtgccatctcggctcactgcaacctctgccagccgagttca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119172300 52 + 128539186 ggagtgcagtggtgccatctcggctcactgcaacctctgccagccgggttca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 485219 52 + 6255621 ggagtgcagtggtgccatctcagctcactgcaacctctgccagccgagttta i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4548961 52 - 8658521 ggagtgcagtggtgccatctcggctcactgcaacctctgccagctgggttca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752533 52 + 124281992 ggagtgcagtggtgctatcttggctcactacaacctctgccatccaggttca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397731 52 - 9212255 ggaatgcagtggtgctatcttggctcactgcaacctgtgccatccaggttca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2810960 52 + 4466143 ggagtgcagtggcgctatcttggctcactgcaacctctgccatccaggttca i cebCap1.NW_016107484v1 C 0 C 0 e micMur3.chr21 9423025 723 - 31815103 I e mm10.chr5 124771431 227 + 151834684 I e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I e dasNov3.JH568189 783449 394 - 1116856 I e canFam3.chr26 33110699 594 - 38964690 I e otoGar3.GL873618 4242436 20 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=1811699.000000 s hg38.chr12_KI270834v1_alt 7799 213 + 119498 a---gtgattctcctgcctcagcctcccgagtggctgggattacaggcatgtgccactatgcctggctagtttttgtatttttagtagagatagggtttcaccatg-----------------ttggccaggctggtcttgaactcctgacctcaagtgacctgcccacctcgggctcccaaagtgttgtgattataggcatgagccactgtgttcag-------------tcAAAAAAAAT---------TTTC-- s panTro5.chr12 127293873 212 + 137163284 a---gtgattctcctgcctcagcctcccgagtggctgggattacaggcatgtgccactatgcctggctagtttttgtatttttagtagagatggggtttcaccatg-----------------ttggccaggctggtcttgaactcctgacctcaagtgacctgcccacctctggctcccaaagtgctgtgattataggcatgagccactgtgttcag-------------tcAAAAAAT-T---------tttt-- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125644919 212 + 135337776 a---gtgattctcctgcctcagcctcccgagtggctgggattacaggcatgtgccactatgcctggctagtttttgtatttttagtagagatggggtttcaccatg-----------------ttggccaggctggtcttgaactcctgacctcaagtgacctgcccacctctggctcccaaagtgctgtgattataggcatgagccactgtgttcag-------------tcAAAAAAT-T---------tttt-- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8157819 213 - 8369578 a---gtgattctcctgcctcagcctcccgagtggctgggattacaggcatgtgccacaatgcctggctagtttttgtatttttagtagagatggggtttcaccatg-----------------ttggccaggctggtcttgaactcctgacctcaagtgacctgcccacctctggctcccaaagtgttgtgattataggcatgagccactgtgttcag-------------tcAAAAAAAAT---------tttt-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97806276 213 + 106955855 a---gtgattctcctgcctcagcctcctaagtagctgggattacaggcatgtgccactatgcctggctaatttttgaatttttagtagagatggggtttcaccatg-----------------ttggccaggctggtcttgaactcttgatctcaagtgacctgcccacctcgggctcccaaagtgttgggattataggcatgagccactgtgttcag-------------tcAAAAAAATT---------tttt-- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123864323 213 + 133663169 a---gtgattctcctgcctcagcctccagagtagttgggattacaggcacgtgccactatgcctggctaatttttgtatttttagtagagatggggtttcaccatg-----------------ttggcgaggctggtcttgaaattctgacctcaagtgacctgcccaccttgggctcccaaagtgttgggattacaggcatgagccaccatgttcag-------------tcAAAAAAATT---------tttt-- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128172523 213 + 137757926 a---gtgattctcctgcctcagcctccagagtagttgggattacaggcacgtgccactatgcctggctaatttttgtatttttagtagagatggggtttcaccatg-----------------ttggcgaggctggtcttgaaattctgacctcaagtgacctgcccaccttgggctcccaaagtgttgggattacaggcatgagccaccATGTTCAG-------------TCAAAAAAATt---------tttt-- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577617 213 - 16319837 a---gtgattctcctgcctcagcctccagagtagttgggattacaggcacgtgccactatgcctggctaatttttgtatttttagtagagatggggtttcaccatg-----------------ttggcgaggctggtcttgaaatcctgacctcaagtgacctgcccaccttgggctcccaaagtgttgggattacaggcatgagccaccatgttcag-------------tcAAAAAAATT---------tttt-- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12199433 213 + 20526591 a---gtgattctcctgcctcagcctccagagtagttgggattacaggcacgtgccactatgcctggctaatttttgtatttttagtagagatggggtttcaccatg-----------------ttggcgaggctggtcttgaaatcctgacctcaagtgacctgccccccttgggctcccaaagtgttgggattacaggcatgagccaccatgttcag-------------tcAAAAAAttt---------tttt-- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119172352 213 + 128539186 a---gtgattctcctgcctcagcctccagagtagttgggattacatgcatgtgccactatgcctggctaatttttgtatttttagtagagatggggtttcaccatg-----------------ttggccaggctggtcttgaaatcctgacctcaagtgacctgcccaccttgggctcccaaagtgttgggattacaggcatgagccaccATGTTCAG-------------TCAAAAAAATt---------tttt-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 485271 200 + 6255621 a---gtgattctcctgcc-------------tagttgggattacaggcacgtgccactatgcctggctaatttttgtatttttagtagagatgaggtttcaccatg-----------------ttggcgaggctggtcttgaaatcctgacctcaagtgacctgcccaccttgggctcccaaagtgttggaattacaggcatgagccaccatgttcag-------------tcAAAAAAttt---------tttt-- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4549013 213 - 8658521 a---gtggttctcctgcctcagcctccagagtagttgggattacaggcatgtgccactatgcctggctaatttttgtatttttagtagagatggggtttcaccatg-----------------ttggccaggctggtcttgaaatcctgacctcaagtgacctgtccaccttgggctcccaaagtgttgggattacaggcatgagccaccATGTTCAG-------------TCAAAAAAATT---------tttt-- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752585 217 + 124281992 agtggtgattctcctgcctgagcctcctgagtagctgggattatgggtacccgccaccatgcccagctaatttttgtatttttagtagagatgaggtttctccttg-----------------ttggccaggctggtcttgaattcctaacctcaagtgacctgcccacctcagcctcccaaaatgctgggattacaggtgtgagccaccatgtccag-------------tcAAAAAATGT--------Gtttt-- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 397783 217 - 9212255 agtggtgattctcctgcctcaatctctcaagtagctgggattacaggcacctgccaccatgcccagctaatttttgtattttcagtagagatggcgtttctccttg-----------------ttggccaggctggtcttgaattcctaacctcacgtgacctgcccacctcagcctcccagagtcttgggattacaggcgtgagccaccgtgtctgg-------------tcAAAAAATTT--------Gtttt-- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2811012 217 + 4466143 agtggtgattctcctgcctcagtctctcaagtagctgggattacagtcacccgccaccatgcccagctaatttttgtattttcagtagagatggagcttctccttg-----------------ttggccaggctggtcttgaattcctaacctcaagtgacctgcccacctcagcctcccaaagtgctgggattacaggcatgagccaccatgtccag-------------tcAAAAAATTT--------Gtttt-- i cebCap1.NW_016107484v1 C 0 C 0 s mm10.chr5 124771658 244 + 151834684 a---gagatccacctgcctctgcctcccacgt-gccggagttaaagcaatgtgctaccacgtctggctctgccttatttttt-----gagacaaagtttctcagtggacctggagttcactgattggctagactg---tctagcccaggagctctaagcatcctcctgtctctg-ccctctcagtgttggtgttgcagaagcacaccaccgtgcccagctttgacgtgggttctgggaagccccattcaggtcttcc i mm10.chr5 I 227 C 0 e micMur3.chr21 9423025 723 - 31815103 I e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I e dasNov3.JH568189 783449 394 - 1116856 I e canFam3.chr26 33110699 594 - 38964690 I e otoGar3.GL873618 4242436 20 + 7922563 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=4467124.000000 s hg38.chr12_KI270834v1_alt 8012 485 + 119498 Tattgaggtaa--------------aatttaaataacataaaactagtgattgtaaagtgcacaattcagtgacatttagtacattcacagtgttgtgcaaccaccacctc----taattccag---attttcatcaaacc---aaaagacaagccagtaccccttaagcagtcattccctacc-atctcctc-c-cccagcacctg----gcaacctccagtctgttttctgtgtcaat-ggatttacctattttggataattcatataagcggaatgacacaatatatgatcctttacgtctggcttttgtcacttagcgtgatgttttccaggttcttccatgttgtagcatgtgtcagtgcttccgtcctttttatggcccaataatattaaatcatgtggattgatcacatgttgtttttc------------------tatccattggctgatagacatttgggttgtttccaccttttggctattgtg------aacagtgctgccgtcagcattcatgtacaactacttgagt s panTro5.chr12 127294085 486 + 137163284 tattgaggtaa--------------aatttaaataacataaaactagcaattgtaaagtgcacaattcagtgacatttagtacattcacagtgttgtgcaaccaccacctc----taattccag---attttcatcaaacc---aaaagaaaagccagtaccccttaagcagtcattccctacccatctcctc-c-cccagcaccgg----gcaacctccagtctgttttccgtgtcaat-ggatttacctattttggatatttcatataagtggaatgacacaatatatgatcctttacgtctggcttttgtcagttagtgtgatgttttccaggttcatccatgttgtagcatgtgtcagtgcttccgtcctttttatggcccaataatattaaatcatgtggattgatcacatgttgtttttc------------------tattcattggctgatagacatttgggttgtttccaccttttggctattgtg------aacagtgctgccatcagcattcatgtacaactacttgagt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125645131 486 + 135337776 tattgaggtaa--------------aatttaaataacataaaactagcgattgtaaagtgcacaattcagtgacatttagtacattcacagtgttgtgcaaccaccacctc----taattccag---attttcatcaaacc---aaaagaaaagccagtaccccttaagcagtcattccctacccatctcctc-c-cccagcaccgg----gcaacctccagtctgttttccgtgtcaat-ggatttacctattttggatatttcatataagtggaatgacacaatatatgatcctttacgtctggcttttgtcagttagtgtgatgttttccaggttcatccatgttgtagcatgtgtcagtgcttccgtcctttttatggcccaataatattaaatcatgtggattgatcacatgttgtttttc------------------tgttcattggctgatagacatttgggttgtttccaccttttggctattgtg------aacagtgctgccatcagcattcatgtacaactacttgagt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8158032 485 - 8369578 tattgaggtaa--------------aatttaaataacataaaactagcgattgtaaagtgcacaattcagtgacatttagtacattcacagtgttgtgcaaccaccacctc----taattccag---attttcatcaaacc---aaaagacaagccagta-cccttaagcagtcattccctacccatctcctc-c-cccagcacctg----gcaacctccagtctgttttctgtgtcaat-ggatttacctattttggatatttcatataagtggaatgacacaatatatgatcctttacgtctggcttttgtcacttagtgtgatgttttccaggttcatccatgttgtagcatgtgtcagtgcttccgtcctttttatggcccaataatattaaatcgtgtggattgatcacatgttgtttttc------------------tattcattggctgatagacatttgggttgtttccaccttttggctattgtg------aacagtgctgctgtcagcattcatgtacaactacttgagt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97806489 482 + 106955855 tattgaggtaa--------------aatttacataacataaaactagctattgtaaagtgcacaa-tcagtgacatttagtacattcacagtgttgtgc-accactacctc----tagttccag---attttcatcaaact---aaaagaaaagccagtaccccttaagcagccattccctacccatctcctc-tgcccagcacctg----gcaacctccagtctgttttctgtgtcaat-ggatttacctattttggatatttcatttaagtggaatgacacaatatatgatcctttacgtctggcttttgtcacttagcatgatgttttccaggttcatccatattgtagcatgtgtcagtgcttccgtcctttttatggcccaataatattaaatcatgtggattgatcaca---tgtttttc------------------tgttcattggctgatagacatttgggttgtttccaccttttggctgctgtg------aacagtgctgctgtcagcattcgtgtacaactacttgagt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123864536 485 + 133663169 tattgaggtga--------------aatttacataacataaaactagctattgtaaagtgcacaattcagtgacatttagtacattcacagtgttgtgcagccaccacctc----tagtttcag---attttcatcaaacc---aaaagaaaagccagtaccccttaagcagtcgctccctacccatctcctcac-cccagcatctg----gcaacctccagtctgttttctgtgtcaat-ggatttacctattttgggtatttcatataagtggaatgacacgatatatgatcctttacgtctgacttttgtcagttagcatgatgttttccaggttcatc--cattttagcatgtgtcagtgcttccatcctttttatggcccaataatattaaatcatgtggcttgatcacatgttgtttttc------------------tgttcattggctgatagacatttgggttgttttcaccttttgactattgtg------aacagtgctgctgtcagcattcatgtacaactacttgagt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128172736 485 + 137757926 tattgaggtga--------------aatttacataacataaaactagctattgtaaagtgcacaattcagtgacatttagtacattcacagtgttgtgcagccaccacctc----tagtttcag---attttcatcaaacc---aaaagaaaagccagtaccccttaagcagtcgctccctacccatctcctcac-cccagcatctg----gcaacctccagtctgttttctgtgtcaat-ggatttacctattttgggtatttcatataagtggaatgacacgatatatgatcctttacgtctgacttttgtcagttagcatgatgttttccaggttcatc--cattttagcatgtgtcagtgcttccatcctttttatggcccaataatattaaatcatgtggcttgatcacatgttgtttttc------------------tgttcattggctgatagacatttgggttgttttcaccttttgactattgtg------aacagtgctgctgtcagcattcatgtacaactacttgagt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10577830 485 - 16319837 tattgaggtga--------------aatttacataacataaaactagctattgtaaagtgcacaattcagtgacatttagtacattcacagtgttgtgcagccaccacctc----tagtttcag---attttcatcaaacc---aaaagaaaagccagtaccccttaagcagtcgctccctacccatctcctcac-cccagcatctg----gcaacctccagtctgttttctgtgtcaat-ggatttacctattttgggtatttcatataagtggaatgacacgatatatgatcctttacgtctgacttttgtcagttagcatgatgttttccaggttcatc--cattttagcatgtgtcagtgcttccatcctttttatggcccaataatattaaatcatgcggcttgatcacatgttgtttttc------------------tgttcattggctgatagacatttgggttgtattcaccttttgactattgtg------aacagtgctgctgtcagcattcatgtacaactacttgagt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12199646 485 + 20526591 tattgaggtga--------------aatttacataacataaaactagctattgtaaagtgcacaattcagtgacatttagtacattcacagtgttgtgcagccaccacctc----tagttccag---attttcgtcaaacc---aaaagaaaagccagtaccccttaagcagtcgctccctacccatctcctcac-cccagcatctg----gcaacctgcagtctgttttctgtgtcaat-ggatttacctattttgggtatttcatataagtggaatgacacgatatatgattctttatgtctgacttttgtcagttagcatgatgttttccaggttcatc--cgttttagcatgtgtcagtgcttccatcctttttatggcccaataatattaaatcatgtggattgatcacatgttgtttttc------------------tgttcactggctgatagacatttgggttgtttccaccttttgactattgtg------aacagtgctgccgtcagcatccatgtacaactacttgagt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119172565 486 + 128539186 tattgaggtga--------------aatttacataacataaaactagctattgtaaagtgcacaattcagtgacattttgtacatt--cagtgttgtgcagccaccacctc----tagttccag---attttcatcaaacc---aaaagaaaagccagtaccccttaagcagtcgctccctacccatctcctcac-cccagcatctg----acaacctccagtctgttttctgtgtcaataggatttacctattttgggtatttcatataagtggaatgacacgatatatgatcctttacgtctgacttttgtcacttagcatgatgttttccaggttcatccacgttttagcatgtgtcagtgcttccatcctttttatggcccaataatattaaatcatgtggattgatcacatgttgtttttc------------------tgttcattgactgatagccttttgggttgttttcaccttctgactattgtg------agcagtgctgccgtcagcattcgtgtacaactacttgagt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 485471 485 + 6255621 tattgaggtga--------------aatttacataacataaaactagctattgtaaagtgcacaattcagtgacatttagtacattcacagtgttgtgcagccaccacctc----tagttccag---attttcgtcaaacc---aaaagaaaagccagtaccccttaagcagtcgctccctacccatctcctcac-cccagcatctg----gcaacctccagtctgttttctgtgtcaat-ggatttacctattttgggtatttcatataagtggaatgacacgatatatgattctttatgtctgacttttgtcagttagcatgatgttttccaggttcatc--cgttttagcatgtgtcagtgcttccatcctttttatggcccaataatattaaatcatgtggattgatcacatgttgtttttc------------------tgttcattggctgatagacatttgggttgttttcaccttttgactattgtg------aacagtgctgctgtcagcattcatgtacaactacttgagt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4549226 487 - 8658521 tattgaggtga--------------aatttacataacataaaactagctattgtgaagtgcacaattcagtgacattttgtacattcacagtgttgtgcagctaccacctc----tagttccag---attttcgtcaaacc---aaaagaaaagccagtaccccttaagcagtcgctccctacccatctcctcac-cccagcatctg----gcaacctccagtctgttttctgtgtcaat-ggatttacctattttgggtatttcatgtaagtggaatgacacgatatatgatcctttacgtctgacttttgtcagttagcatgatgttttccaggttcatccgtgttttagcatgtgtcagtgcttccatcctttttatggcccaataatattaaatcatgtggattgatcacatgttgtttttc------------------tgttcattgactgatagacatttgggttgttttcaccttttgactattgtg------aacagtgctgccatcagcattcatgtacaactgcttgagt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114752802 458 + 124281992 tattgaggtga--------------aatttccataccataaaactggctattgtaaagtacacaattcagtgacattcaggacgttcacagtgttgtgcaaccaccacctc----tactctcag---attttcttcaaacc----aaagaaaagccagtaccccttaagcagccactccctacccatctcctc------------------------------ctgttttctgtgtcagt-ggatttgcctattttggatgtttcacataaatggagtgacacaatatacaaccctttacgtctggcttttgtcacttagcgtgatg-tttccaggttc--acgtgttgcagcatgtgtcagtgcttcagtcctttttatggcccaataatagtcaatcgtgtggattgagcacatgctattttcc------------------tgttcattggccgatagacatctgtgttgtttccacctttcggctattgtg------aacagtgctgctgtcagcattcatgtacagttacttgagt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 398000 506 - 9212255 tattgaggtga--------------aatttacataccataaaactggctgttgtaaagtgcacaattcagtgacatttagtacattcaccatgttgtgcaactaccgcctg----tacttccag---attttcatcaaacc----aaagaaaagccagtaccccttaagcagccactccctacccatctcctc-c-ctcagaaacagactggcaaccaccggtctgttttctgtgttagt-ggatttgcctattttggatgtttcacacaaatggagtgacacaatatacgatcctttacgtctggcttttgttacttagcatgacg-tttccaggttcttccgtgttgcagcatgtgtcagtgcttcagttcttttcaggacccaataatattccctagtatggattgagcacatgttgtttttcaaacttactgttttccaatattcattggctgatagacatttgggttgtttccactttttggctattgtg------aacagtgctgctgtcggcatctatgtacaattacttgagt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2811229 488 + 4466143 tattgaggtga--------------aatttgcataccataaaactggcttctgtaaagtgcacaattcagtgacatttagtacattcacaatgttgtgcaaccaccacctc----tgcttccag---attttcttgaaacc----aaagaacagccagtgccccttgagcagccactccctacccatctcctccc-cccagaaacagact-gcaaccaccagtctgttttccgtgtcaat-ggatttgcctattttggatgtttcacttaaatggagtgacacaatatatgatcctttacgtctggcttttgttacttagcatgatg-tttccgggttcttccgtgttgtagcatgtgtcagtgcttcagtcctttgtatggcccaataatattcaatcgtgtagattgagcacatgttgtttctc------------------tgttcattggctgatagacaattgggttgtttccaccttttggctattgtg------aacagtgctgctgtcaacattcatgtacaattacttgagt i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4242456 448 + 7922563 tattgagttgc--------------aatttatataacataaaacgaaccattttaaagcatacaattgggtgatatttagtacattcaccatgttgtgcagccatcaccta----ccgttccagaacatttttgtcaaacc---taaagaaaagttaatactcgttaagcagacatttccctcccatcacatc-t----------------gctcccacaggtctgt-----------at-ggatttacctattgtagatatttcgtataaatggagtcatgtaatctgtggtcctttatgtctggcttttttagcttagcataatg------------------attttgacatgtatcaatatgtcatttccggttttggccaaataatgttctattgtatggatggactacattttgtctgtc------------------tgttcattggttgatggacatttgggtgggttccagctttgggctgttgtg------agcagtg-tgctgtgagcatttgtgtgcaactatttgagt i otoGar3.GL873618 I 20 C 0 s mm10.chr5 124771902 480 + 151834684 tgcttgggcagtttctggccccagcaatctcaccaac--taaatcaaccactttagaatgtgcaggtcaggagcctttagagca---actgtgttatataaacactgcctccatttggttccag---aattatctcagcactatgaaagaaaa--------cccctagaccatcgcttcccagctcccaagtc---cccagttccca----gttccccaaaactggctttcagtttccac---accagcctatcctgtgcatctcttatgtgtgaagtcacacacaa-----------------ggcctttttcattcagcatgagatgttcaaggcttacccacatggcaccatctgtctttgcttctctcctctttgtggttaaacaatattctgttgcatggctagaccacctttgatttatc------------------cattcatcacttggtggccatctacgctgctcctacctcctgggtcctaggcgttacggcaatgctaccgggagagctcgtgactaatgctatgcgt i mm10.chr5 C 0 C 0 e micMur3.chr21 9423025 723 - 31815103 I e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I e dasNov3.JH568189 783449 394 - 1116856 I e canFam3.chr26 33110699 594 - 38964690 I e aotNan1.NW_018491581v1 1505117 2555 + 5364348 I a score=141495.000000 s hg38.chr12_KI270834v1_alt 8497 12 + 119498 ccctgttttcaa------- s panTro5.chr12 127294571 12 + 137163284 ccctgttttcaa------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125645617 12 + 135337776 ccctgttttcaa------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8158517 12 - 8369578 ccctgttttcaa------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97806971 12 + 106955855 ccctgttttcag------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865021 12 + 133663169 ccctgttttcaa------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173221 12 + 137757926 ccctgttttcaa------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578315 12 - 16319837 ccctgttttcaa------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200131 12 + 20526591 ccctgttttcaa------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173051 12 + 128539186 ccctgttttcaa------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 485956 12 + 6255621 ccctgttttcaa------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4549713 12 - 8658521 ccctgttttcaa------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114753260 12 + 124281992 ccctgttttcaa------- i calJac3.chr9 C 0 I 312 s saiBol1.JH378194 398506 12 - 9212255 ccctgttttcaa------- i saiBol1.JH378194 C 0 I 309 s cebCap1.NW_016107484v1 2811717 12 + 4466143 ccctgttttcag------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1507672 12 + 5364348 ccctgttttcaa------- i aotNan1.NW_018491581v1 I 2555 C 0 s otoGar3.GL873618 4242904 12 + 7922563 cactgttttcag------- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124772382 18 + 151834684 -ccggctctcacttttcct i mm10.chr5 C 0 C 0 e micMur3.chr21 9423025 723 - 31815103 I e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I e dasNov3.JH568189 783449 394 - 1116856 I e canFam3.chr26 33110699 594 - 38964690 I a score=93279.000000 s hg38.chr12_KI270834v1_alt 8509 7 + 119498 ttctttt s panTro5.chr12 127294583 7 + 137163284 ttctttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125645629 7 + 135337776 ttctttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8158529 7 - 8369578 ttctttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97806983 7 + 106955855 ttctttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865033 7 + 133663169 ttctttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173233 7 + 137757926 ttctttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578327 7 - 16319837 ttctttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200143 7 + 20526591 ttctttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173063 7 + 128539186 ttctttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 485968 7 + 6255621 ttctttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4549725 7 - 8658521 ttctttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114753584 7 + 124281992 ttctttt i calJac3.chr9 I 312 I 1 s saiBol1.JH378194 398827 7 - 9212255 ttctttt i saiBol1.JH378194 I 309 I 1 s cebCap1.NW_016107484v1 2811729 7 + 4466143 ttctttt i cebCap1.NW_016107484v1 C 0 I 316 s aotNan1.NW_018491581v1 1507684 7 + 5364348 ttctttt i aotNan1.NW_018491581v1 C 0 I 1 s otoGar3.GL873618 4242916 7 + 7922563 ttctttt i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124772400 7 + 151834684 ttcttcg i mm10.chr5 C 0 C 0 e micMur3.chr21 9423025 723 - 31815103 I e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I e dasNov3.JH568189 783449 394 - 1116856 I e canFam3.chr26 33110699 594 - 38964690 I a score=27540.000000 s hg38.chr12_KI270834v1_alt 8516 7 + 119498 gggtcaa s panTro5.chr12 127294590 7 + 137163284 gggtcaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125645636 7 + 135337776 gggtcaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8158536 7 - 8369578 gggtcaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97806990 7 + 106955855 gggtcaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865040 7 + 133663169 gagtcaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173240 7 + 137757926 gagtcaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578334 7 - 16319837 gagtcaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200150 7 + 20526591 gagtcaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173070 7 + 128539186 gagtcaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 485975 7 + 6255621 gagtcaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4549732 7 - 8658521 gagtcaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114753592 3 + 124281992 gaa---- i calJac3.chr9 I 1 I 2 s saiBol1.JH378194 398835 3 - 9212255 gaa---- i saiBol1.JH378194 I 1 I 2 s aotNan1.NW_018491581v1 1507692 3 + 5364348 gaa---- i aotNan1.NW_018491581v1 I 1 I 2 s otoGar3.GL873618 4242923 7 + 7922563 gggtctg i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124772407 7 + 151834684 gtgtctg i mm10.chr5 C 0 C 0 e micMur3.chr21 9423025 723 - 31815103 I e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I e dasNov3.JH568189 783449 394 - 1116856 I e canFam3.chr26 33110699 594 - 38964690 I e cebCap1.NW_016107484v1 2811736 316 + 4466143 I a score=369319.000000 s hg38.chr12_KI270834v1_alt 8523 32 + 119498 tacctaggagcggaattgctgggcacatggta s panTro5.chr12 127294597 32 + 137163284 tacctaggagcggaattgctgggcacatggta i panTro5.chr12 C 0 C 0 s panPan2.chr12 125645643 32 + 135337776 tacctaggagcggaattgctgggcacatggta i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8158543 32 - 8369578 tacctaggagcggaattgctgggcacatggta i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97806997 32 + 106955855 tacctaggagcggaattgctgggcacgtggta i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865047 32 + 133663169 tacctaggagcggacttgctgggcacttggta i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173247 32 + 137757926 tacctaggagcggacttgctgggcacttggta i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578341 32 - 16319837 tacctaggagcggacttgctgggcacttggta i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200157 32 + 20526591 tacctaggagcggacttgctgggcacttggta i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173077 32 + 128539186 tacctaggagcggacttgctgggcacatggta i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 485982 32 + 6255621 tacctaggagaggacttgctgggcacttggta i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4549739 32 - 8658521 tacctaggagtggacttgctgggcacatggta i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114753597 32 + 124281992 tacctaggagggaaattgctgggcacgtggta i calJac3.chr9 I 2 C 0 s saiBol1.JH378194 398840 32 - 9212255 tacctaggagcggaattgccaggcacgtggta i saiBol1.JH378194 I 2 C 0 s cebCap1.NW_016107484v1 2812052 32 + 4466143 tacctaggagcggaattgtcaggcacatggta i cebCap1.NW_016107484v1 I 316 C 0 s aotNan1.NW_018491581v1 1507697 32 + 5364348 tacctaggagcggaattgccgggcacctggta i aotNan1.NW_018491581v1 I 2 C 0 s otoGar3.GL873618 4242930 32 + 7922563 tatctagtagcagaattgctgggcccgtggta i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124772414 32 + 151834684 tatctgaaaacagaatggctCAGAAGGTGGTA i mm10.chr5 C 0 C 0 e micMur3.chr21 9423025 723 - 31815103 I e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I e dasNov3.JH568189 783449 394 - 1116856 I e canFam3.chr26 33110699 594 - 38964690 I a score=253898.000000 s hg38.chr12_KI270834v1_alt 8555 26 + 119498 cttggctcacttttt-gagTG---TCTGGC s panTro5.chr12 127294629 26 + 137163284 cttggcttacttttt-gagTG---TCTGGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125645675 26 + 135337776 cttggcttacttttt-gagTG---TCTGGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8158575 26 - 8369578 cttggcttacttttt-gagTG---TCTGGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807029 28 + 106955855 cttgtctcacttttt-gCGTG-GCTTTGGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865079 28 + 133663169 cttggctcacttttt-gCATG-GCTTTGGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173279 28 + 137757926 cttggctcacttttt-gCATG-GCTTTGGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578373 28 - 16319837 cttggctcacttttt-gCATG-GCTTTGGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200189 28 + 20526591 cttggctcacttttt-gCATG-GCTTTGGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173109 28 + 128539186 cttGGCTCATTTTTC-GCATG-GCTTTGGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486014 28 + 6255621 cttggctcacttttt-gCATG-GCTTTGGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4549771 28 - 8658521 cttggctcacttttt-gCATG-GCTTTGGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114753629 28 + 124281992 cttggttcccttttt-gTGTG-GCTTTGGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 398872 28 - 9212255 cttggttcccttttt-gTGTG-GCTTTGGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812084 28 + 4466143 cttggttcccttttt-gTGTG-GCTTTGGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1507729 28 + 5364348 cttggttcccttttt-gTGTG-GCTTTGGC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4242962 30 + 7922563 cttGGCTTACTTTTTCCCATGGGCTTCTGC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124772446 25 + 151834684 TGTGGCTTGCCATGA-GTATG-GCTTC--- i mm10.chr5 C 0 C 0 s dasNov3.JH568189 783843 28 - 1116856 cTGGCCTCGCTTTTA-CAGGG-GCTTCTGC i dasNov3.JH568189 I 394 C 0 e micMur3.chr21 9423025 723 - 31815103 I e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I e canFam3.chr26 33110699 594 - 38964690 I a score=935641.000000 s hg38.chr12_KI270834v1_alt 8581 79 + 119498 ATGGCCTGTCCTTCGCTGTTGTGGGTCACAG-GCTTC-ACCCTCTTCTCATAACTAGAAGTTTTCCTACCTGTGCTGGGCT s panTro5.chr12 127294655 79 + 137163284 ATGGCCTGTCCTTTGCTGTTGTGGGTCACAG-GCTTC-ACCCCCTTCTCATAACTAGAAGTTTTCCTACCTGTGCTGGGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125645701 79 + 135337776 ATGGCCTGTCCTTTGCTGTTGTGGGTCACAG-GCTTC-ACCCCCTTCTCATAACTAGAAGTTTTCCTACCTGTGCTGGGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8158601 79 - 8369578 ATGGCCTGTCCTTCGCTGTTGTGGGTCACAG-GCTTC-ACCCCCTTCTCATAACTAGAAGTTTTCCTACCTGTGCTGGGCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807057 79 + 106955855 ATGGCCTGTCCTTCGTTGTTGTGGGTCACAG-GCTTC-ACCCCCTTCTTATAACTAGAAGTTTTCCTACCTGTGCTGGGCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865107 79 + 133663169 ATGGCCTGTCCTTAGTTGTTGTGGGTCACAG-GCTTC-ACCCCCTTCTCATAACTAGACATTTTCCTACCTGTGCTGGGCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173307 79 + 137757926 ATGGCCTGTCCTTAGTTGTTGTGGGTCACAG-GCTTC-ACCCCCTTCTCATAACTAGACATTTTCCTACCTGTGCTGGGCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578401 79 - 16319837 ATGGCCTGTCCTTAGTTGTTGTGGGTCACAG-GCTTC-ACCCCCTTCTCATAACTAGACATTTTCCTACCTGTGCTGGGCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200217 79 + 20526591 ATGGCCTGTCCTTAGTTGTTGTGGGTCACAG-GCTTC-ACCCCCTTCTCATAACTAGACATTTTCCTACCTGTGCTGGGCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173137 79 + 128539186 ATGGCCTGGCCTTAGTTGTTGTGGGCCACAG-GCTTC-ACCCCCTTCTCACAACTAGACGTTTTCCCACCTGCGCTGGGCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486042 79 + 6255621 ATGGCCTGTCCTTAGTTGTTGTGGGTCACAG-GCTTC-ACCGCCTTCTCATAACTAGACATTTTCCTACCTGTGCTGGGCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4549799 79 - 8658521 ATGGCCTGTTCTTAGTTGTTGTGGGTCACAG-GCTTC-ACCCCCTTCTCATAACTAGACGTTTTCCTACCTGTGCTGGGCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114753657 76 + 124281992 ATGGCCTGTCCTTGGTGATTGTGGGTCACAG-GCTTT-ACCCCCTTTCCGTAACTAGAAGTTTTCCTACCTA---TGGGCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 398900 79 - 9212255 ATGGCCTGTCCTTGGTGATTGTGGGTCACAG-GCTTA-ACCCCCATTTCATAACTAGAAGTTTTCCTACCTATGCTGGGCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812112 79 + 4466143 ATGGCCTGTCCTTGGTGATTGTGGGTCACAG-GCTTC-ACCCCCTTTTCATAACTAGAAGTTTTCCTACCTAAGCTGGGCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1507757 79 + 5364348 ATGGCCTGTCCTTGGTTGCTGCGGGTCACAG-GCTTC-ACCCCCTTTTCATAACTAGAAGTTTTCCTGCCTATGCTGGGCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4242992 77 + 7922563 ATGGCCTGTCCTGGGTTGTTATGAGTCACAG-GGCTC--TACCCTGCTCATAACTAAAAG-TTTCCTCCCTGTCCTGGGTT i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124772471 72 + 151834684 ----CCTA---CTGGCCATTGGCACTCACAGAGCTCC-AAGTTCTACATGTAACTTAGCA-TGTCCTCCCTGCCTGGGACT i mm10.chr5 C 0 I 1 s canFam3.chr26 33111293 78 - 38964690 ATGATTTGTCCTTTGTTCCTCTGGGTTATAG-GGCTC-CAACCCTGCTTATAACTAGAAG-CTTCTTCCTTGTCCTGGGCT i canFam3.chr26 I 594 I 1 s dasNov3.JH568189 783871 73 - 1116856 ATG----GTTCTGAGTCCTT--GAATCACAG-GCCTCTGACCCCCGCTCACAGCTAGGAACTTTCTT-CCCATCCTGGGCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9423025 723 - 31815103 I e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I a score=427528.000000 s hg38.chr12_KI270834v1_alt 8660 29 + 119498 -GCATGGAGAGCTTTCTTTTGCTTTTGAGT s panTro5.chr12 127294734 29 + 137163284 -GCATGGAGAGCTTTCTTTTGCTTTTGAGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125645780 29 + 135337776 -GCATGGAGAGCTTTCTTTTGCTTTTGAGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8158680 29 - 8369578 -GCATGGAGAGCTTTCTTTTGCTTTTGAGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807136 29 + 106955855 -GCGTGGAGAGCTTTCTTTTGCTTTAGAGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865186 29 + 133663169 -GCGTGGAGAGCTTTCTTTTGCTTTAGAGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173386 29 + 137757926 -GCGTGGAGAGCTTTCTTTTGCTTTAGAGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578480 29 - 16319837 -GCGTGGAGAGCTTTCTTTTGCTTTAGAGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200296 29 + 20526591 -GCATGGAGAGCTTTCTTTTGCTTTAGAGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173216 29 + 128539186 -GCATGGAGAGCTTTCTTTTGCTTTAGAGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486121 29 + 6255621 -GCATGGAGAGCTTTCTTTTGCTTTAGAGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4549878 29 - 8658521 -GCATGGAGAGCTTTCTTTTGCTTTAGAGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114753733 29 + 124281992 -GCGTATAGAGCTTTCTTTTGCTTTTGAGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 398979 29 - 9212255 -GCATGGAGAGCTTCCTTTTGCTTTTGAGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812191 29 + 4466143 -GCATGGAGAGCTTCCTTTTGCTTTTGAGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1507836 29 + 5364348 -GCGTGGAGAGCTTTCTTTTGCTTTTGAGT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9423748 29 - 31815103 -GCATAGAGAGTTTTCTTTTGCTTTTGAGT i micMur3.chr21 I 723 C 0 s otoGar3.GL873618 4243070 29 + 7922563 -GCAATGAGCATGGCCATGTATTTTTAAAT i otoGar3.GL873618 I 1 C 0 s mm10.chr5 124772544 29 + 151834684 -GAGCGGGGAGCATTATTTTGCTTTTTAGT i mm10.chr5 I 1 I 129 s canFam3.chr26 33111372 29 - 38964690 -GTGTGGAGAGTTTTCTTTTGCTTTTGAGT i canFam3.chr26 I 1 I 13 s dasNov3.JH568189 783944 30 - 1116856 GGTATGGAGAGTGCTCTCTTGCTGTGGAAT i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I a score=75135.000000 s hg38.chr12_KI270834v1_alt 8689 6 + 119498 GTGGCC s panTro5.chr12 127294763 6 + 137163284 GTGGCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125645809 6 + 135337776 GTGGCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8158709 6 - 8369578 GTGGCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807165 6 + 106955855 GTGGCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865215 6 + 133663169 GTGGCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173415 6 + 137757926 GTGGCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578509 6 - 16319837 GTGGCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200325 6 + 20526591 GTGGCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173245 6 + 128539186 GTGGCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486150 6 + 6255621 GTGGCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4549907 6 - 8658521 GTGGCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114753762 6 + 124281992 GTGGCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 399008 6 - 9212255 GTGGCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812220 6 + 4466143 GTGGCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1507865 6 + 5364348 GTGGCC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9423777 6 - 31815103 GTGGCC i micMur3.chr21 C 0 I 168 s otoGar3.GL873618 4243099 2 + 7922563 AT---- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124772702 6 + 151834684 gtgact i mm10.chr5 I 129 C 0 s canFam3.chr26 33111414 6 - 38964690 GTATCT i canFam3.chr26 I 13 I 7 s dasNov3.JH568189 783974 6 - 1116856 ATTTTT i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I a score=2008540.000000 s hg38.chr12_KI270834v1_alt 8695 186 + 119498 -----GTTAGT------------------------------------------TATGCTTTC---------------------------------CCCAGCATTCCCATTCA----------------------------------------------TTTGGAGTGGA-GGGGA-GCT-GGCCATGCA---GATGCTCACTCTGTCACCTTGCCTGGAAGGTCCTCCCAC---CTGAGTTGATTTGGTTCTGTCTCATGTCAGGATGGGGCTTTGCCATCCACTTTTGGAGGTATCTGATAACCCCTGCTGACACTGACC s panTro5.chr12 127294769 186 + 137163284 -----ATTAGT------------------------------------------TATGCTTTC---------------------------------CCCAGCATTCCCATTCA----------------------------------------------TTTGGAGTGGA-GGGGA-GCT-GGCCATGCA---GATGCTCACTCTGTCACCTTGCCTGGAAGGTCCTCCCAC---CTGAGTTGCTTTGGGTCTGTCTCGTGTCAGGGTGGGGCTTTGCCATCCACTTTTGGAGGTATCTGATAACCCCTGCTGACACTGACC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125645815 186 + 135337776 -----ATTAGT------------------------------------------TATGCTTTC---------------------------------CCCAGCATTCCCATTCA----------------------------------------------TTTGGAGTGGA-GGGGA-GCT-GGCCATGCA---GATGCTCACTCTGTCACCTTGCCTGGAAGGTCCTCCCAC---CTGAGTTGCTTTGGGTCTGTCTCGTGTCAGGGTGGGGCTTTGCCATCCACTTTTGGAGGTATCTGATAACCCCTGCTGACACTGACC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8158715 186 - 8369578 -----ATTAGT------------------------------------------TATGCTTTC---------------------------------CCCAGCATTCCCATTCA----------------------------------------------TTTGGAGTGGA-GGGGA-GCT-GGCCATGCA---GATGCTCACTCTGTCACCTTGCCTGGAAGGTCCTCCCAC---CTGAGTTGATTTGGGTCTGTCTCGTGTCAGGGTGGGGCTTTGCCATCCACTTTTGGAGGTATCTGATAACCCCTGCTGACACTGACC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807171 186 + 106955855 -----ATTAGT------------------------------------------TATGCTTTC---------------------------------CCCAGCATTCCCATTCA----------------------------------------------TTTGGAGTGGA-GGGGA-GCT-GGCCATGCA---GATGCTCACTCTGTCACCTTGCCTGGAAGGTCCTCCCAC---CTGAGTTGATTTGGGTCTGTCCCGTGTCAGGGTGGGGCTTTGCCATCCACTCCTGCAGGTATCTGATAACCCCTGCTGACACTGACC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865221 185 + 133663169 -----ATTAGT------------------------------------------TATGCTTTC---------------------------------CTCGGCATTCACCTTCT-----------------------------------------------TTGGAGTGGA-GGGGA-GCT-GGCCATGCA---CATGCTCACTCTGTCACCTTGCCTGGAAGGTCCTTCCAC---CGGGGTTGATTTGGGTCTGTCCCGTGTCAGGGTGGGGCTTTGCCATCCACTCCTGGAGGTATCTGATAACCCCTGCTGACACTGACC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173421 185 + 137757926 -----ATTAGT------------------------------------------TATGCTTTC---------------------------------CTCGGCATTCACCTTCT-----------------------------------------------TTGGAGTGGA-GGGGA-GCT-GGCCATGCA---CATGCTCACTCTGTCACCTTGCCTGGAAGGTCCTTCCAC---CGGGGTTGATTTGGGTCTGTCCCGTGTCAGGGTGGGGCTTTGCCATCCACTCCTGGAGGTATCTGATAACCCCTGCTGACACTGACC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578515 185 - 16319837 -----ATTAGT------------------------------------------TATGCTTTC---------------------------------CTCGGCATTCACCTTCT-----------------------------------------------TTGGAGTGGA-GGGGA-GCT-GGCCATGCA---CATGCTCACTCTGTCACCTTGCCTGGAAGGTCCTTCCAC---CGGGGTTGATTTGGGTCTGTCCCGTGTCAGGGTGGGGCTTTGCCATCCACTCCTGGAGGTATCTGATAACCCCTGCTGACACTGACC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200331 185 + 20526591 -----ATTAGT------------------------------------------TATGCTTTC---------------------------------CTCGGCATTCACCTTCA-----------------------------------------------TTGGAGTGGA-GGGGA-GCT-GGCCATGCA---CATGCTCACTCTGTCACCTTGCCTGGAAGGTCCTTCCAC---TGGGGTTGATTTGGGTCTGTCCGGTGTCAGGGTGGGGCTTTGCCGTCCACTCCTGGAGGTATCTGATAACCCCTGCTGACACTGACC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173251 185 + 128539186 -----ATTGGT------------------------------------------TATGCTTTC---------------------------------CTCGGCAGTCACCTTCA-----------------------------------------------TTGGAGTGGA-GGGGA-GCT-GGTCGTGCA---GATGCTCACTCTGTCACCTTGCCTGGAAGGTCCTTCCAC---CTGGGTTGATTTGGGTCTGTCCCGTGTCAGGGTGGGGCTTTGCCATTCACTCCTGGAGGTATCTGATAACCCCTGCTGACACTGACC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486156 184 + 6255621 ------TTAGT------------------------------------------TATGCTTTC---------------------------------CTCGGCATTCACCTTCA-----------------------------------------------TTGGAGTGGA-GGGGA-GCT-GGGCATGCA---CATGCTCACTCTGTCACCTTGCCTGGAAGGTCCTTCCAC---CGGGGTTGATTTGGGTCTGTCCCGTGTCAGGGTGGGGCTTTGCCATCCACTCCTGGAGGTATCTGATAACCCCTGCTGACACTGACC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4549913 185 - 8658521 -----ATTAGT------------------------------------------TATGCTTTC---------------------------------CTCGGCATTCACATTCA-----------------------------------------------TCGGAGTGGA-GGGGA-GCT-GGCCATGCA---GGTGCTCACTCTGTCACCTTGCCTGGAGGGTGCTTCCAC---CTGGGTTGATTTGGGTCTGTCCCATGTCAGGGTGGGGCTTTGCCATCCACTCCTGGAGGTATCTGATAACCCCTGCTGACACGGACC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114753768 185 + 124281992 -----ATTAGT------------------------------------------TATGCTTTC---------------------------------CCTAGCATTTCCATTCA----------------------------------------------TTTGGAGTGGA-GGGGA-GCT-GGCCGTGCA---GATGCTCACTCTGTCACCTTGCCTGGAAGGTCCTTCCAT---CTGAGTTGCTTTGGGTCTGTCCTGTGTCAGGGT-GGGTTTTGCTGTCCGTTCCTGGAGGTATCTGATGATCACTGCTGACGCTGACC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 399014 185 - 9212255 -----ATTAGT------------------------------------------TGCG-TTTC---------------------------------CCTAGCATTCCCATTCA----------------------------------------------TTTGGAGTGGA-GGGGA-GCTCGGCCGTGCA---GATGCTCACTCTGTCACCTTGCCTGGAAGGTCCTTCCGT---CTGAGTTGATTTGGGTCTGTCCCATGTCAGGGT-GGGCTTTGCTCTCCATTCCTGGAGGTATCTGATAATCACTGCTGACACTGACC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812226 189 + 4466143 -----ATTAGT------------------------------------------TATGCTTTC---------------------------------CGTAGCATTCCCATTCA----------------------------------------------TTTGGAGTGGA-GGGGA-GCTCGGCCGTGCAGATGATGCTCACTCTGTCACCTTGCCCGGAAGGTCCTTCTGT---CTGAGTTGATTTGGGTCTGTCCTGTGTCAGGGT-GGGCTTTGCTATCCATTCCTGGAGGTATCTGATAATCACTGCTGACACTGACC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1507871 185 + 5364348 -----ATTAGT------------------------------------------TATGCTTTC---------------------------------CCTAGCATTCCCATTCA----------------------------------------------TTTGGAGTGGA-GGGGA-GCT-GGCCGTGCA---GATGCTTACTCCGTCACCTTGCCTGGAAGGTCCTTCCAT---CTGAGTTGACTTGGGTCTGTCCTGTGTCAGGGT-AGGCTTTGCTATCCATTCCTGGAGGTATCTGATAATCATTGCTGACACTGACC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4243101 185 + 7922563 ------TTAGT------------------------------------------TCTGTGTTC---------------------------------TCCAGCATTCCTGTACA----------------------------------------------TTTGGGGTGCAGGGGGA-GCT-GGCCATATG---TGTCCTCACTGGGTCTTTTTGTCTAGAAATTCTTTCCAC---CTGAGTTGATTTGAATTCGTCCCATGTTAAGGTGGGATGTTGTAATACATTCCCTGAGGTA-CTGGTGACTCCCTCTGACATTAACA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124772708 305 + 151834684 -----attaatacatagagtgcccatgacagcagtatctcagaactgtgtgaatgtgctctctgcataccttctgaacgatgagatttttagactcctggtaaccacagtcgacccaaacccgggaaagcaaaagtgaacatccgggagggctCGGTGTGTGAGGTAGA-GGGGGCGGT-GGCCAGGTC---CCTGCACACCGTGTCGCTTGGCCTGCTAAGTTCTTGTTTGCACCAAGCTGACTTGGGCGTGTTCTGATTTAGGGAGGGATTTTGC-GTGTGTTGCTGGC-ATCCCTGCTCACCCT--CTGACGTTGA-- i mm10.chr5 C 0 C 0 s canFam3.chr26 33111427 164 - 38964690 -----TTTAGC------------------------------------------TATGATTTC---------------------------------TCTATTGTTCTTATATA----------------------------------------------TTTGGAAAGGA-GTGTA----------TGCA-------CTCACTCTGCCATCTTGCCTGGGAAGACTTTTGAC---CTGTGTTAATGTGACTCCGTCCCCTGTTAGAGTGGGATTTTACCATACGTAGTTTGAGGTACCTG--------TGCTAACATTAA-- i canFam3.chr26 I 7 C 0 s dasNov3.JH568189 783980 187 - 1116856 AAATGCTTCAT------------------------------------------CATCCTTTA---------------------------------TCCAGCATTTCTGTGTA----------------------------------------------TTTGGGTCGGA-GGGGT-G-T-GGTTATGTT---TGTGCTTTCCCCACTGTCTTTCCTTGACAGTCCTT-TAC---CTGAGGTGG-TTGTGTTTGTCCTGGGTTGGAGTGGGAGTTTGCTCTTCACACCT-GAGGCGCTTGCTAATTTGCGTCAATACTAACA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9423783 168 - 31815103 I e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I a score=177033.000000 s hg38.chr12_KI270834v1_alt 8881 13 + 119498 TTTTGTACATTTA s panTro5.chr12 127294955 13 + 137163284 TTTTGTACATTTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125646001 13 + 135337776 TTTTGTACATTTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8158901 13 - 8369578 TTTTGTACATTTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807357 13 + 106955855 TTTTGTACCTTTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865406 13 + 133663169 TTTTGTACTTTTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173606 13 + 137757926 TTTTGTACTTTTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578700 13 - 16319837 TTTTGTACTTTTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200516 13 + 20526591 TTTTGTACTTTTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173436 13 + 128539186 TTTTGTACATTTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486340 13 + 6255621 TTTTGTACTTTTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4550098 13 - 8658521 TTTTGTACATTTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114753953 13 + 124281992 TTTTGTACATTTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 399199 13 - 9212255 TTTTGTACATTTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812415 13 + 4466143 TTTTGTACATTTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1508056 13 + 5364348 TTTTGTACATTTA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9423951 13 - 31815103 TTTTGTGCATTCA i micMur3.chr21 I 168 C 0 s otoGar3.GL873618 4243286 13 + 7922563 TTCTATATGTTTA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124773013 13 + 151834684 TGCGGTGCATTTC i mm10.chr5 C 0 C 0 s canFam3.chr26 33111591 13 - 38964690 TGTTGTGCATTTC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 784167 11 - 1116856 --TCCTGCACTTA i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6676264 1073 - 9870158 I a score=2694678.000000 s hg38.chr12_KI270834v1_alt 8894 135 + 119498 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTTCCGGAAGAGGCAAAAAAGTTTGACAACATCGATAAAGTATTTAAAAGGGCAAGTGAC s panTro5.chr12 127294968 135 + 137163284 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTTCCGGAAGAGGCAAAAAAGTTTGACAACATCGATAAAGTATTTAAAAGGGCAAGTGAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125646014 135 + 135337776 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTTCCGGAAGAGGCAAAAAAGTTTGACAACATCGATAAAGTATTTAAAAGGGCAAGTGAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8158914 135 - 8369578 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTTCCGGAAGAGGCAAAAAAGTTTGACAACATCGATAAAGTATTTAAAAGGGCAAGTGAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807370 135 + 106955855 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTCCCGGAAGAGGCAAAAAAGTTTGACAACATCGATAGAGTATTTAAAAGGGCAAGTGAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865419 135 + 133663169 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTCCCAGAAGAGGCAAAAAAGTTTGACAACATCGATAGAGTATTTAAAAGGGCAAGTGAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173619 135 + 137757926 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTCCCAGAAGAGGCAAAAAAGTTTGACAACATCGATAGAGTATTTAAAAGGGCAAGTGAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578713 135 - 16319837 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTCCCAGAAGAGGCAAAAAAGTTTGACAACATCGATAGAGTATTTAAAAGGGCAAGTGAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200529 135 + 20526591 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTCCCGGAAGAGGCAAAAAAGTTTGACAACATCGATAGAGTATTTAAAAGGGCAAGTGAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173449 135 + 128539186 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTCCCGGAAGAGGCAAAAAAGTTTGACAACATCGATAGAGTATTTAAAAGGGCAAGTGAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486353 135 + 6255621 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTCCCGGAAGAGGCAAAAAAGTTTGACAACATCGATAGAGTATTTAAAAGGGCAAGTGAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4550111 135 - 8658521 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTCCCGGAAGAGGCAAAAAAGTTTGACAACATCGATAGAGTATTTAAAAGGGCAAGTGAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114753966 135 + 124281992 CAGATTTGGATGCTCGTTCAGAGAAAATGGATGTATCTTGAAAGCATTTTTATTGGTGGAGATATAAGATCACAACTTCCAGAAGAGGCGAAAAAGTTTGACAGCATCGATAGAGTATTTAAAAGGGCAAGTGAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 399212 135 - 9212255 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTTCCAGAAGAGGCAAAAAAGTTTGACAACATCGATAGAGTATTTAAAAGGGCAAGTGAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812428 135 + 4466143 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTTCCAGAAGAGGCAAAAAAGTTTGACAACATCGATAGAGTATTTAAAAGGGCAAGTGAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1508069 135 + 5364348 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTTCCAGAAGAGGCAAAAAAGTTTGACAACATCGATAGAGTATTTAAAAGGGCAAGTGAC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9423964 135 - 31815103 CAGATTTGGATGTTGGTTCAGAGGAAATGGATGTATCTCGAAAGCATTTTTATTGGCGGAGATATAAGGTCACAACTTCCGGATGAGGCAAAGAAGTTCGACAACATCGACAGAATCTTTAAAAGGGCAAGTGAC i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6677337 135 - 9870158 CAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGCATTTTTATTGGCGGAGATATAAGATCACAACTTCCGGATGAGGCAAAGAAGTTTGACAACATCGACAGAATATTTAAAAGGGCAAGTGAC i proCoq1.NW_012154285v1 I 1073 C 0 s otoGar3.GL873618 4243299 135 + 7922563 CAGATTTGGATGTTGGTGCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCGCAACTTCCAGATGAGGCAAAAAAGTTTGACAACATCGATAGAATATTTAAAAGGGCAAGTAAC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124773026 135 + 151834684 CAGATCTGGATGCTGGTTCAGAGGAAGTGGATGTACCTGGAGAGCATCTTCATTGGGGGGGACATACGGTCCCAGCTGCCTGAGGAGGCCAAGAAGTTTGACAACATCGACAGGATATTTAAGAGGGCGAGTGGC i mm10.chr5 C 0 I 130 s canFam3.chr26 33111604 135 - 38964690 CAGATATGGATGTTGGTTCAGAGGAAATGGATGTATCTTGAAAGCATTTTTATCGGTGGAGATATCAGGTCACAACTTCCAGATGAGGCAAAGAAGTTTGACAACATCGATAGGATATTTAAAAGGGCAAGTGAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 784178 135 - 1116856 CAGATATGGATGCTGGTTCAGAGAAAATGGATGTATCTTGAAAGCATTTTTATTGGTGGAGATATACGATCACAACTTCCAGATGAGGCAAAGAAGTTTGACACCATCGATAGAGTATTTAAAAGGGCAAGTGAC i dasNov3.JH568189 C 0 C 0 a score=650917.000000 s hg38.chr12_KI270834v1_alt 9029 47 + 119498 TCGCTTCTATTTTAGTAATGAAAGAAGGGCAGCGATTTGAGATATTT s panTro5.chr12 127295103 47 + 137163284 TCGCTTCTATTTTAGTAATGAAAGAAGGGCAGCGATTTGAGATATTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125646149 47 + 135337776 TCGCTTCTATTTTAGTAATGAAAGAAGGGCAGCGATTTGAGATATTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8159049 47 - 8369578 TCGCTTCTATTTTAGTAATGAAAGAAGGGCAGCGATTTGAGATATTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807505 43 + 106955855 TCACTTCTATTTTAGT----AAAGAAGGGCAGTGATTTGAGCTATTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865554 47 + 133663169 TCACTTGTATTTTAGTAATGAAAGAAGGGCAGTGTTTTGAGATATTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173754 47 + 137757926 TCACTTGTATTTTAGTAATGAAAGAAGGGCAGTGTTTTGAGATATTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578848 47 - 16319837 TCACTTGTATTTTAGTAATGAAAGAAGGGCAGTGTTTTGAGATATTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200664 47 + 20526591 TCACTTGTATTTTAGTAATGAAAGAAGGGCAGTGTTTTGAGATATTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173584 47 + 128539186 TCACTTGTATTTTAGTAATGAAAGAAGGGCAGTGTTTTGAGATATTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486488 47 + 6255621 TCACTTGTATTTTAGTAATGAAAGAAGGGCAGTGTTTTGAGATATTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4550246 47 - 8658521 TCACTTGTATTTTAGTAATGAAAGAAGGGCAGTGTTTTGAGATGTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114754101 47 + 124281992 TCACTTCTGTTTCGGTAATGAAAGAAGGGCAGTGGTCTGAGATGTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 399347 47 - 9212255 TTACTTCTATTTTAGTAATGAAAGAAGGGCAGTGATCTGAGATATTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812563 47 + 4466143 TCACTTCTGTTTTAGTAATGAAAGAAGGGCAGTGATCTGAGATATTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1508204 47 + 5364348 TCACTTCTGTTTTAGTAATGAAAGAAGGGCAGTGATCTGAGATATTT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9424099 47 - 31815103 TGGCGACTGTTTTGGTCATGCGAGGAGGACAGCGATTTGAGATATTT i micMur3.chr21 C 0 I 2089 s proCoq1.NW_012154285v1 6677472 47 - 9870158 TGGCGTCTATTTTGGTCATGAGAGGAGGACAGTGCTTTGAGATATTT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4243434 47 + 7922563 TGTCATCTATTTGAGTCATGAGAAAAGGACAGTGACTTGAGAAATGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33111739 44 - 38964690 TGGCTTCTATTTTAGTCACGAAAGCA---CAGTTATTTGAGATACTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 784313 47 - 1116856 CGGCTTCTACTTTAGTCATGAAAGAAAGATGGTTATTGGAGATTCTT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124773161 130 + 151834684 I a score=388114.000000 s hg38.chr12_KI270834v1_alt 9076 34 + 119498 GTACCTTTTTATTTGCACATTGTATTTTCT-CCAT s panTro5.chr12 127295150 34 + 137163284 GTACCTTTTTATTTGCACATTGTATTTTCT-CCAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125646196 34 + 135337776 GTACCTTTTTATTTGCACATTGTATTTTCT-GCAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8159096 34 - 8369578 GTACCTTTTTATTTGCACATTGTATTTTCT-CCAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807548 34 + 106955855 GTACTTTTTTATTTGCACATGGTGTTTTCT-CCAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865601 34 + 133663169 GTACTTTTTTATTTGCACATTGTATTTTCT-CCGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173801 34 + 137757926 GTACTTTTTTATTTGCACATTGTATTTTCT-CCGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578895 34 - 16319837 GTACTTTTTTATTTGCACATTGTATTTTCT-CCGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200711 34 + 20526591 GTACTTTTTTATTTGCACATTGTACTTTCT-CCGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173631 34 + 128539186 GTACTTTTTTATTTGCACATTGTATTTTCT-CCAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486535 34 + 6255621 GTACTTTTTTATTTGCACATTGTATTTTCT-CCAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4550293 34 - 8658521 GTACTTTTTTATTTGCACATTGTATTTTCT-CCAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114754148 33 + 124281992 GTAC-TTTTTATTTGCACATTGTATTTTCT-CCAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 399394 34 - 9212255 GTAC-TTTTTATTTGCACACTGTATTTTCTCCCAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812610 19 + 4466143 GTAC-ATTGTA--------------TTTCT-CCAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1508251 33 + 5364348 GTAC-TTTTTATTTGCACATTGTATTTTCT-CCAT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6677519 34 - 9870158 TTATTTTTGTATGTGCATGTCATATTTTCT-CCAT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4243481 34 + 7922563 TTACATTTGTTTTTGCATGTAATGTTTTCT-CCAT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33111783 34 - 38964690 TTACTTATGTTTCTGCATGTAGTATTTTGT-CTGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 784360 34 - 1116856 TTACTTTTATGTTTGCATGCAGTATTTTCT-CTGT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I a score=154964.000000 s hg38.chr12_KI270834v1_alt 9110 11 + 119498 T-AGTAGCTTCT s panTro5.chr12 127295184 11 + 137163284 T-AGTAGCTTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125646230 11 + 135337776 T-AGTAGCTTCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8159130 11 - 8369578 T-AGTAGCTTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807582 11 + 106955855 T-AGTAGCTTCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865635 11 + 133663169 T-GGTAGCTTCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173835 11 + 137757926 T-GGTAGCTTCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578929 11 - 16319837 T-GGTAGCTTCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200745 11 + 20526591 T-GGTAGCTTCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173665 11 + 128539186 T-GGTAGCTTCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486569 11 + 6255621 T-GGTAGCTTCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4550327 11 - 8658521 T-GGTAGCTTCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114754181 11 + 124281992 T-AGTAGCttct i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 399428 11 - 9212255 T-AGTGGCTTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812629 11 + 4466143 T-AGTAGCttct i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1508284 11 + 5364348 T-AGTGGCttct i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6677553 11 - 9870158 T-GGTAGCTTCT i proCoq1.NW_012154285v1 C 0 I 268 s otoGar3.GL873618 4243515 11 + 7922563 T-AGTAGCTTCT i otoGar3.GL873618 C 0 I 9 s canFam3.chr26 33111817 12 - 38964690 TAAGTAGCTTCT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e dasNov3.JH568189 784394 0 - 1116856 C a score=40321.000000 s hg38.chr12_KI270834v1_alt 9121 8 + 119498 CTCTCAtt- s panTro5.chr12 127295195 8 + 137163284 CTCTCAtt- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125646241 8 + 135337776 CTCTCAtt- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8159141 8 - 8369578 CTCTCAtt- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807593 8 + 106955855 CTCTCAtt- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865646 8 + 133663169 CTCTCAtt- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173846 8 + 137757926 CTCTCAtt- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578940 8 - 16319837 CTCTCAtt- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200756 8 + 20526591 CTCTCAtt- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173676 8 + 128539186 CTCTCAtt- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486580 8 + 6255621 CTCTCAtt- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4550338 8 - 8658521 CTCTCAtt- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114754192 4 + 124281992 ctc----t- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 399439 4 - 9212255 CTC----T- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812640 4 + 4466143 ctc----t- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1508295 4 + 5364348 ctc----t- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4243535 8 + 7922563 TTCCCATT- i otoGar3.GL873618 I 9 I 249 s canFam3.chr26 33111829 6 - 38964690 ---GGattt i canFam3.chr26 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6677564 268 - 9870158 I e dasNov3.JH568189 784394 0 - 1116856 C a score=720283.000000 s hg38.chr12_KI270834v1_alt 9129 81 + 119498 ttttagagacagggttt------tgctctgttg-cccaggctggagtgcagtgatgtgatcgtggctccctgta---gccttgaacttatg s panTro5.chr12 127295203 81 + 137163284 ttttagagacagggttt------tgctctgttg-cccaggctggagtgcagtgatgtgatcgtggctccctgta---gccttgaaattatg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125646249 81 + 135337776 ttttagagacagggttt------tgctctgttg-cccaggctggagtgcagtgatgtgatcgtggctccctgta---gccttgaaattatg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8159149 81 - 8369578 ttttagagacagggttt------tgctctgttg-cccaggctggagtgcagtgatgtgatcatggctccctgta---gccttgaacttatg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807601 82 + 106955855 ttttagagacagggttt------tgctttgttgccccaggctggagtgcagtgatgtgatcatggctcactgta---gcctcaaactcatg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865654 81 + 133663169 ttttagagacagggttt------tgctccgttg-cccaggctggagtgcagtgatgtgatcatggctctctgta---gcctcaaactcatg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173854 81 + 137757926 ttttagagacagggttt------tgctccgttg-cccaggctggagtgcagtgatgttatcatggctctctgta---gcctcaaactcatg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10578948 81 - 16319837 ttttagagacagtgttt------tgctccgttg-cccaggctggagtgcagtgatatgatcatggctctctgta---gcctcaaactcatg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200764 81 + 20526591 ttttagagacagggttt------tgctccgttg-cccaggctggagtgcagtgatgtgatcatggctctctgta---gcctcaaactcatg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173684 81 + 128539186 ttttagagacagggttt------tgctccgttg-cccaggctggagtgcagtgatgtgatcatggctctctgta---gcctcaaactcatg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486588 81 + 6255621 ttttagagacagggttt------tgcgccgttg-cccaggctggagtgcagtgatgtgatcatggccctctgta---gcctcaaactcatg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4550346 81 - 8658521 ttttagagacagggttt------tgctccgttg-cccaggctggagtgcagtgatgtgatcatggctgtctgta---gcctcaaactcatg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114754196 81 + 124281992 ttttagagacagtgtct------tgctctgttg-cccaggctggagtgcagtgatgtgatcatggctcactgca---gcctcgaactcttg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 399443 49 - 9212255 TTTTAGAGACAGTGTCTGCAACAGGCTCTGT---------------------------------------tgca---gcctcgaactcttg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812644 81 + 4466143 ttttagagacagtgtct------tgctctgttg-cccaggctggagtgcagtgatgtgatcatggctcactgca---gcctcgaactcttg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1508299 81 + 5364348 ttttagagacagtgtct------tgctctgttg-cccaggctggagtgcagtgatatgatcatggctcactgca---gcctcgaactcttg i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33111835 61 - 38964690 ttttaa-------gttt------tttttttttt-tttaaG----------------TAATCTCTAcacccaacatgggacttgaactcatg i canFam3.chr26 C 0 I 17 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6677564 268 - 9870158 I e dasNov3.JH568189 784394 0 - 1116856 C e otoGar3.GL873618 4243543 249 + 7922563 I a score=119923.000000 s hg38.chr12_KI270834v1_alt 9210 14 + 119498 ggctaaagagatcc s panTro5.chr12 127295284 14 + 137163284 ggctaaagagatcc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125646330 14 + 135337776 ggctaaagagatcc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8159230 14 - 8369578 ggctaaagagatcc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807683 14 + 106955855 ggctaaagagatcc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865735 14 + 133663169 ggctaaagagatcc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173935 14 + 137757926 ggctaaagagatcc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10579029 14 - 16319837 ggctaaagagatcc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200845 14 + 20526591 ggctaaagagatcc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173765 14 + 128539186 ggctacagagatcc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486669 14 + 6255621 ggctaaagagatcc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4550427 14 - 8658521 ggctaaagagatcc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114754277 11 + 124281992 ggct---gagatcc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 399492 11 - 9212255 ggct---gagatcc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812725 11 + 4466143 ggct---gagatcc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1508380 11 + 5364348 ggct---gagatcc i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6677564 268 - 9870158 I e dasNov3.JH568189 784394 0 - 1116856 C e canFam3.chr26 33111896 17 - 38964690 I e otoGar3.GL873618 4243543 249 + 7922563 I a score=397987.000000 s hg38.chr12_KI270834v1_alt 9224 39 + 119498 tcctaactca------gcctcccaagcagctgggacta------------------caggcat s panTro5.chr12 127295298 39 + 137163284 tcctaactca------gcctcccaagcagctgggacta------------------caggcat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125646344 39 + 135337776 tcctaactca------gcctcccaagcagctgggacta------------------caggcat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8159244 39 - 8369578 tcctaactca------gcctcccaagcagctgggacta------------------caggcat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807697 39 + 106955855 tcctacctcg------gcctcccaagcaattgggacta------------------caggcat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865749 39 + 133663169 tcctacctca------gcctctcaaacagctgggacta------------------caggcat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173949 39 + 137757926 tcctacctca------gcctctcaaacagctgggacta------------------caggcat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10579043 39 - 16319837 tcctacctca------gcctctcaaacagctgggacta------------------taggcat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200859 39 + 20526591 tcctacctca------gcctctcaaacagctgggacta------------------caggcat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173779 39 + 128539186 tcctacttca------gcctcctaaatagctgggacta------------------caggcat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486683 39 + 6255621 tcctacctca------gcctctcaaacagctgggacta------------------caggcag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4550441 39 - 8658521 tcctacctca------gcctcccaaacagttgggacta------------------caggcat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114754288 39 + 124281992 tcctgcctca------gcctcccaagcagctgggatta------------------cagacat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 399503 39 - 9212255 tcctgcctca------gcctctcaagcagctgggatta------------------caggcat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812736 39 + 4466143 tcctgcctca------gcctcccaatcagctgggatta------------------caggcat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1508391 39 + 5364348 tcctgcctca------gcctcccaagcagctgggatta------------------caggcat i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4243792 63 + 7922563 ttctaacccagtctgggcctgccaaacaacagtgacaactacaaccaaaaaatagccaggcat i otoGar3.GL873618 I 249 I 351 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6677564 268 - 9870158 I e dasNov3.JH568189 784394 0 - 1116856 C e canFam3.chr26 33111896 17 - 38964690 I a score=70615.000000 s hg38.chr12_KI270834v1_alt 9263 7 + 119498 gtgctgc s panTro5.chr12 127295337 7 + 137163284 gtgctgc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125646383 7 + 135337776 gtgctgc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8159283 7 - 8369578 gcactgc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807736 7 + 106955855 gtgctgc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865788 7 + 133663169 gtgctgc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173988 7 + 137757926 gtgctgc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10579082 7 - 16319837 gtgctgc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200898 7 + 20526591 gtgctgc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173818 7 + 128539186 gtgctgc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486722 7 + 6255621 gtgctgc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4550480 7 - 8658521 gtgctgc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114754327 7 + 124281992 gcgctgc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 399542 7 - 9212255 gtgctgc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812775 7 + 4466143 gaactgc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1508430 7 + 5364348 gcgctgc i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6677564 268 - 9870158 I e dasNov3.JH568189 784394 0 - 1116856 C e canFam3.chr26 33111896 17 - 38964690 I e otoGar3.GL873618 4243855 351 + 7922563 I a score=1366535.000000 s hg38.chr12_KI270834v1_alt 9270 149 + 119498 catgctcagctaattaaaacattttttatagggataggatcttgctatgttgtccaggctggtctcaaactcctagcctcaactgactctcccacattggcctcccaaagcactgggattacaggagtgggtcaccttgcctggccCAC s panTro5.chr12 127295344 149 + 137163284 catgctcagctaattaaaacattttttatagggataggatcttgctatgttgtccaggctggtctcaaactcctagcctcaactgactttcccacattggcctcccaaagcactgggattacaggagtgggtcaccttgcctggccCAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125646390 149 + 135337776 catgctcagctaattaaaacattttttatagggataggatcttgctatgttgtccaggctggtctcaaactcctagcctcaactgactttcccacattggcctcccaaagcactgggattacaggagtgggtcaccttgcctggccCAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8159290 149 - 8369578 catgctcagctaattaaaacattttttatagggataggatcttgctatgttgtccaggctggtctcaaactcctagcctcaagtgactctcccacattggcctcccaaagcactgggattacaggagtgggtcaccttgcctggccCAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807743 149 + 106955855 catgcccagctagttaaaacattttttatagggataggatcttgctatgttgtccaggctggtctcatattcctagcctcaaatgattctcccacgtcggcctcccaaagcactgggattacaggcatgggtcactttccccagccCAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865795 148 + 133663169 catgcccagctaattaaaaca-tttttacagggataggatcttgctacgttgtccaggctggtctcaaactcctagcctcaagtgactctcccacatcagcctcccaaagcactgggattacaggtgtgggtcaccttacccggccCAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128173995 148 + 137757926 catgcccagctaattaaaaca-tttttacagggataggatcttgctacgttgtccaggctggtctcaaactcctagcctcaagtgactctcccacatcagcctcccaaagcactgggattacaggtgtgggtcaccttacccggccCAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10579089 148 - 16319837 catgcccagctaattaaaaca-tttttacagggataggatcttgctacgttgtccaggctggtctcaaactcctagcctcaagtgactctcccacatcagcctcccaaagcactgggattacaggtgtgggtcaccttacccggccCAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12200905 148 + 20526591 catgcccagctaattaaaaca-tttttacagggataggatcttgctatgttgtccaggctggtctcaaactcctagcctcaagtgactctcccatatcagcctcccaaagcactgggattacaggtgtgggtcaccttacccggccCAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173825 148 + 128539186 catgcccagctaatgaaaaca-tttttacagggataggatcttgctatgttgtccaggatggtctcaaactcctagcctcaagtgactctcccacctcagcctcccaaagcactgagattacaggcatgggtcaccttgcccagccCAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486729 148 + 6255621 catgcccagctaattaaaaca-tttttacagggataggatcttgctacgttgtccaggctggtctcaaactcctagcctcaagtgactccctcacatcagcctcccaaagcactgggattacaggtgtgggtcaccttacctggccCAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4550487 148 - 8658521 catgcccagctaattaaaaca-tttttacagggataggatcttgctacgttgtccaggctggtctcaaactcctagcctcaagtgactctcccacatcagcctcccaaagcactgggattacaggcatgggtcaccttgcccggccCAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114754334 149 + 124281992 catgtctggctaatttaaaaattttttatagggataggatcttgccatgtcgtccaggccggtctcaaactcccagcctcaagtgattctcccaccgtgggcttccaaagcactgggattataggcgagggtcgccttgccTAGTCCAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 399549 146 - 9212255 catgcccg---aatttaaaaatgttttataaggataggatcttgctatgttgtccaggctggtctcaaactcccagcctcaagtgattctcccaccacggccttccaaagcgctgggattacaggcgtgggtcaccttgccTAGTCCAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812782 148 + 4466143 catgcccagctaatttaaaatttttttatagggataggatcttgctatgttgtgcaggctagtctcaaactcccagcctcaagtgattctcccaccgcggccttccaaagcactgggattacaggc-cgggtcaccttgccTAGTCCAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1508437 149 + 5364348 catgcctggctaatttaaaaattttttatagggataggatcttgctatgttgtccaggctggtctcaaactcccagcttcaagtgattctcccaccgcagccttccaaagcactgggcttacaggtgtgggtcgcctcgccTAGTCCAC i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33111913 35 - 38964690 catgctcttctaactgagcca--------------------------------------------------------------------------gccagacACCCAAA---------------------------------------- i canFam3.chr26 I 17 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6677564 268 - 9870158 I e dasNov3.JH568189 784394 0 - 1116856 C e otoGar3.GL873618 4243855 351 + 7922563 I a score=1061348.000000 s hg38.chr12_KI270834v1_alt 9419 89 + 119498 TAGTAGCTTCTGAATTTTT-CGTGTCATTATTTATGACCCTAATCTGTCTAGTAAAAATTCCCATTTGATTTTTAGCTGCTGGCATATGA s panTro5.chr12 127295493 89 + 137163284 TAGTAGCTTCTGAATTTTT-CGTGTCATTATTTATGACCCTAATCTGTCTAGTAAAAATTCCCATTTGATTTTTAGCTGCTGGCATATGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125646539 89 + 135337776 TAGTAGCTTCTGAATTTTT-CGTGTCATTATTTATGACCCTAATCTGTCTAGTAAAAATTCCCATTTGATTTTTAGCTGCTGGCATATGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8159439 89 - 8369578 TAGTAGCTTCTGAATTTTT-CGTGTCATTATTTATGACCCTAATCTGTCTAGTAAAAATTCCCGTTTGATTTTTAGCTGCTGGCATATGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807892 89 + 106955855 TGGTAGCTTCTGAATTTTT-CCTGTCATTATTTATGACCCTAATCTGTCTAGTAAAAATTCCCGTTTGATTTTTAGCTGCTGGCATATGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123865943 89 + 133663169 TAGTAGCTTCTGAATTTTT-CCTGTCATTATTTATGACCCTAATCTGTCTAGTAAAAATTCCCATTTGATTTTTAGCTGCTGGCGTATGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128174143 89 + 137757926 TAGTAGCTTCTGAATTTTT-CCTGTCATTATTTATGACCCTAATCTGTCTAGTAAAAATTCCCATTTGATTTTTAGCTGCTGGCGTATGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10579237 89 - 16319837 TAGTAGCTTCTGAATTTTT-CCTGTCATTATTTATGACCCTAATCTGTCTAGTAAAAATTCCCATTTGATTTTTAGCTGCTGGCGTATGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12201053 89 + 20526591 TAGTAGCTTCTGAATTTTT-CCTGTCATTATTTATGACCCTAATCTGTCTAGTAAAAATTCCCATTTGATTTTTAGCTGCTGGCGTATGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119173973 89 + 128539186 TAGTAGCTTCTGAATTTTT-CCTGTCATTATGTATGACCCTAATCTGTCTAGTAAAAATTTCCATTTGATTTTTAGCTGCTGGCGTATGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486877 89 + 6255621 TAGTAGCTTCTGAATTTTT-CCTGTCATTATTTATGACCCTAATCTGTCTAGTAAAAATTCCCATTTGATTTTTAGCTGCTGGCATATGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4550635 89 - 8658521 TAGTAGCTTCTGAATTTTT-CCTGTCATTATTTATGACCCTAATCTGTCTAGTAAAAATTCCCATTTGATTTTTAGCTGCTGGCGTATGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114754483 89 + 124281992 TAGTAGCTTCTGAATTTTT-CCTGTCATTATATATGACCTTAGTCTATCTAATAAAAATTTCGGTTTGATTTTTAGCTGCTGGCATATGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 399695 89 - 9212255 TAGTAGCTTCTGAATTTTT-CCTGTCATTATGTATGACCTTAATCTATCTAATACAAATTTCTGTTGGATTTTTAGCTGCTGGCATATGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2812930 89 + 4466143 AAATAGCTTCTGAATTTTT-CCTGTCACTATATATGACCTTAATCTATCTGATAAAAATTTGTGTTTGATTTTTAGCTGCTGGCATATGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1508586 89 + 5364348 TAGCAGCTTCTGAATTTTT-CCTGTCATTATATATGACCGTAATCTATCTAATAAAAATTTCTGTTTGATTTTTAGCTGCTGGCATATGA i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33111948 83 - 38964690 -------TCCTGAATTTTTAAAAATCATTACATATGACTTGAATCTGTTCAGTAGAAATTTCTGTTTGGTTTCAAGCCACTGGCATATGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 784394 90 - 1116856 TAGTGTCTTCTGAATTTTTTTCTGTCATAATACATGACTTTAATCTGTTTAAGAAAAATTTCTATTTGATCTTTAGCTGCTGGCACATGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6677564 268 - 9870158 I e otoGar3.GL873618 4243855 351 + 7922563 I a score=207313.000000 s hg38.chr12_KI270834v1_alt 9508 18 + 119498 CACTGAA---TCTtttttaca s panTro5.chr12 127295582 18 + 137163284 CACTGAA---TCTTTTTTACA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125646628 18 + 135337776 CACTGAA---TCTTTTTTACA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8159528 18 - 8369578 CACTGAA---tcttttttaca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807981 18 + 106955855 CACTGAA---TCTTTTTTACA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123866032 18 + 133663169 CACTGAA---TCTTTTTTACA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128174232 18 + 137757926 CACTGAA---tcttttttaca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10579326 18 - 16319837 CACTGAA---TCTTTTTTACA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12201142 18 + 20526591 CACTGAA---TCTTTTTTACA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119174062 18 + 128539186 CACTGAA---TCTTTTTTACA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486966 18 + 6255621 CACTGAA---TCTTTTTTACA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4550724 18 - 8658521 CACTGAA---TCTTTTTTACA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114754572 18 + 124281992 CACTGAA---TCTTCTTCACA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 399784 18 - 9212255 CACCAAA---TCTTTTTCACA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2813019 18 + 4466143 CACTGAA---TCTTTTTCACA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1508675 18 + 5364348 CACCGAA---TCTTTTTCACA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4244206 18 + 7922563 cactgag---ctacCtttaaa i otoGar3.GL873618 I 351 I 8 s canFam3.chr26 33112031 18 - 38964690 CACTTTA---ACTTTTTTATA i canFam3.chr26 C 0 I 7 s dasNov3.JH568189 784484 17 - 1116856 --CTAAAACGTTTTATTTA-- i dasNov3.JH568189 C 0 I 195 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6677564 268 - 9870158 I a score=2236191.000000 s hg38.chr12_KI270834v1_alt 9526 185 + 119498 tttattataaaagcaatatttgcttg-tttaaaatattttgaaagtgt--agaacagtgg---aaaaa--tg-tatctctcatggttctgtcactttaatgggaccactttaacatgtcaatatattcc-ttttatc---ttttt--cctatgtgtataagtttaaaaagcataattgtaa--tcatattgtgtacaacttt s panTro5.chr12 127295600 184 + 137163284 TTTATTATAAAAGCAATATTTGCTTG-TTTAAAATATTTTGAAAATGT--AGAACAGTGG---AAAAA--TG-TATCTCTCATGGTTCTGTCACTTTAATGGGACCACTTTAACATGTCAGTATATTCC-TTTTATC---TTTTT--CCtatgtgtataagtttaaaaagcataattgtaa--t-atattgtgtacaacttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125646646 184 + 135337776 TTTATTATAAAAGCAATATTTGCTTG-TTTAAAATATTTTGAAAATGT--AGAACAGTGG---AAAAA--TG-TATCTCTCATGGTTCTGTCACTCTAATGGGACTACTTTAACATGTCAGTATATTCC-TTTTATC---TTTTT--CCTATGTGTATAAGTTTAAAAAGCATGattgtaa--t-atattgtgtacaacttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8159546 185 - 8369578 tttattataaaagcaatatttgcttg-tttaaaatattttgaaaatgt--agaacagtgg---aaaaa--ta-tatctctcatggttctgtcacgttaatgggaccactttaacatgtcaatatattcc-ttttatc---ttttt--cctatgtgtataagcttaaaaagcataattgtaa--tcatattgtgtacaacttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97807999 185 + 106955855 TTTATTATAAAAGCAATATTTGCTTG-TTTAAAATATTTTGAAAATGT--AGAACAGTGG---AAAAA--TG-TATCTCTCATGGTTCTGTCACTTTAATGGGACCACTTTAACATGTCAATATATTCC-TTTTATC---TTTTT--CCTGTGTGTATAAGTTTAAAAagcataactgtaa--tcatattgtgtacaacttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123866050 171 + 133663169 TATATTATAAAAGCAATATTTGCTTG-TTTAAAATATTTTGAAGACGT--AGAACAGTGG---AAAAA--TG-TATCTCTCATGGTTCTGTc--------------actttaacatgtcaacatattcc-ttttatc---ttttt--cctatgtgtatacatttaaaaagcataattgtaa--tcatattgtgtacaacttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128174250 171 + 137757926 tttattataaaagcaatatttgcttg-tttaaaatattttgaaaacgt--agaacagtgg---aaaaa--tg-tatctctcatggttctgtc--------------actttaacatgtcaacatattcc-ttttatc---ttttt--cctatgtgtatacatttaaaaagcataattgtaa--tcatattgtgtacaacttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10579344 171 - 16319837 TTTATTATAAAAGCAATATTTGCTTG-TTTAAAATATTTTGAAAACGT--AGAACAGTGG---AAAAA--TG-TATCTCTCATGGTTCTGTc--------------actttaacatgtcaacatattcc-ttttatc---ttttt--cctatgtgtatacatttaaaaagcataattataa--tcatattgtgtacaacttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12201160 171 + 20526591 TTTATTATAAAAGCAATATTTGCTTG-TTTAAAATATTTTGAAAATGT--AGAACAGTGG---AAAAA--TG-TATCTCTCATGGTTCTGTc--------------actttaacatgtcaacatattcc-ttttatc---ttttt--cctatgtgtatacatttaaaaagcataattgtaa--tcatattgtgtacaacttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119174080 171 + 128539186 TTTATTATAAAAGCAATATTTGCTTG-TTTAAAATATTTTGAAAACGT--GGAACAGTGG---AAAAA--TG-TGTCTTTCATGGTTCTGTc--------------actttaacatgtcaacatattcc-ttttatc---ttttt--actatgtgtatacatttaaaaagcataattgtaa--tcatattgtgtacaacttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 486984 170 + 6255621 TTTATTATAAAAGCAATATTT-CTTG-TTTAAAATATTTTGAAAACGT--AGAACAGTGG---AAAAA--TG-TATCTCTCATGGTTCTGTc--------------actttaacatgtcaacatattcc-ttttatc---ttttt--cctatgtgtatacatttaaaaagcataattgtaa--tcatattgtgtacaacttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4550742 171 - 8658521 TTTATTATAAAAGCAATATTTGCTTG-TTTAAAATATTTTGAAAACAT--AGAACAGTGG---AAAAA--TG-TATCTCTCATGGTTCTGTc--------------actttaacatgtcaacatattcc-ttttatc---ttttt--cctatgtgtatacatttaaaaagcataattgtaa--tcatattgtgtacaacttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114754590 185 + 124281992 TTTATCATAAAAGCAATATTTGCTTG-TTTAAAATATTTTGAAAATGT--GGAACAGTGG---AAAAA--CG-TCTCTCTCATGGTTTTGTCACTTTCATGGGCCCACTTTAACATGTCACtgtattca-tgttatc---ttttt--cctatgtgtattaatttaaaaagcataattataa--tcacactgtgtacaacttt i calJac3.chr9 C 0 I 2 s saiBol1.JH378194 399802 185 - 9212255 TTTATCATAAAAGCAATATTTGCTTG-TTTAAAATATTTTGAAAATGT--AGAACAGTGG---AAAAA--CA-TACCTCTCATGGTTTTGTCACTTTCATGGGACCACTTTAACACATCACTATATTCA-TTTTATC---TTTTT--CCTATGTGTATTAATTTAAAAAGCGTAATTATAA--TCACATTGTGTACAACttt i saiBol1.JH378194 C 0 I 303 s cebCap1.NW_016107484v1 2813037 185 + 4466143 TTTATCAGAAAAGCAATATTTGCTTG-TTTAAAATATTTTGAAAATGT--AGTACAGTGG---GAAAA--CG-TGTCTCTCATGGTTTTGTCACTTTCATGGGCCCACTTTAACATGTGACTATATTCA-TTTTATC---TTTTT--CCTATGTGTATTAATTTAAAAAGCGTAATTATAA--TCACATTGTGTACAACTTT i cebCap1.NW_016107484v1 C 0 I 2 s aotNan1.NW_018491581v1 1508693 185 + 5364348 TTTATCATAAAAGCCACATTTGCTTG-TTTAAAACATTCTGAAAACGT--GGAACAGTGG---AAAGA--CA-TATCTCTCATGGTTTTGTCACTTTCATGGGaccactttaacacgtcactgtattca-ttttatc---ttttc--cctatgcgtattaatttaaaaagtgtaattataa--tcacattgtgtacaacttt i aotNan1.NW_018491581v1 C 0 I 2 s proCoq1.NW_012154285v1 6677832 176 - 9870158 TTTATTATAAAAGCAATACTTGCTTG-TTTAAAAAATTTTGAAAATGT--AAAAAAGAAG---GAAAA-------------ATGGTTCTGTCACCTTCATGGGACCACTTTAATTTGTCAGTTTATTCCTTTTTATC--TTTTTT--CCTATGTGAATAGGTTTAAAaa-cataacgataa--tcatattgtgtacgatttt i proCoq1.NW_012154285v1 I 268 I 2 s otoGar3.GL873618 4244232 189 + 7922563 tttattataaaaataatatttGCTTATTTTAAAACATTTTGAAAATTT--ACAAAAGTAG---GAAAAAATG-TATCTCTCATGGTTTTATCACCTTAATGGGACCACTTTAATTTGTCAACATATTCC-TTTTATC---TTTTT--CCTATGTGAATAAGTTTGAAAA-AATAATGATAATGTCATTTGGtgtacagtttt i otoGar3.GL873618 I 8 I 2 s canFam3.chr26 33112056 184 - 38964690 tttattataaaagaaatacttgctta------aaagcttggaaaatgt--aaaaaggtaggaaaaaaa--tg-tgtcttctagacttccatcatctcgatgtgaccacttcaatatgcc-gtatatttc-ttttgtctttttttt--tctgtgtacatgGGTTTAAACA-CACAATGTTAA--TAGTATTTTGTATAATTTT i canFam3.chr26 I 7 C 0 s dasNov3.JH568189 784696 183 - 1116856 tttattataaaagtaataccagcttt-tttaaacaccttggaaaatgtgaaaaaaaatag---aaaaa--aattatcttgcatggtcccttcacgttatcatgactacttcaatatgt-------ttct-ttttacc---tttttaatatatgtatatagattttaaaaacacaattgtaa--tcatactgtgtacaatttt i dasNov3.JH568189 I 195 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I a score=3236201.000000 s hg38.chr12_KI270834v1_alt 9711 274 + 119498 atatcataattttctcttaatattat---gagaaa--c---agttcatattaggaagtcatctgagaaaataatttcatggctctc--tat---a---ttccagggagtgggctgacattagtttagttgattactctccagtaatttgacattttgtttgaaca-gagttctttgctttcataaataatgtacaggttcttgcctaatgctttttccatagttagagtgaatgtcttaagatagattgtta-----------gaaagcaaattgcccgtgaaagggtg-tgtgtattttaaa s panTro5.chr12 127295784 277 + 137163284 atatcataattttctcttaatattattatgagaaa--c---agttcatattaggaagtcatctgagaaaataatttcatggctctc--tat---a---ttccagggagtgggctgacattagtttagttgattactctccagtaatttgacattttgtttgaaca-gagttctttgctttcataaataatgtacaggttcttgcctaatgctttttccatagttagagtgaatatcttaagatagattgtta-----------gaaagcaaattgcccgtgaaagggta-tgtgtattttaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125646830 277 + 135337776 atatcataattttctcttaatattattatgagaaa--c---agttcatattaggaagtcatctgagaaaataatttcatggctctc--tat---a---ttccagggagtgggctgacattagtttagttgattactctccagtaatttgacattttgtttgaaca-gagttctttgctttcataaataatgtacaggttcttgcctaatgctttttccatagttagagtgaatatcttaagatagattgtta-----------gaaagcaaattgcccgtgaaagggta-tgtgtattttaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8159731 274 - 8369578 atatcataattttctcttaatattat---gagaaa--c---agttcatattaggaagtcatctgagaaaataatttcatggctctc--tat---a---ttccagggagtgggctgacattagtttagttgattactctccagtaatttgacattttgtttgaaca-gagttctttgctttcataaataatgtacaggttcttgcctaatgctgtttccatagttagagtgaatatcttcagatagattgtta-----------gaaagcaaattgcccgtgaaagggtg-tgtgtattttaaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97808184 273 + 106955855 atatcataattttctcttaatattac---gagaaa--c---agttcatattaggaagtcatctgagaaaataatttcatggctctc--tat---a---ttccagtgagtgggctgacattagtttagtcgattactctctagtaatttgacattttgtttgaaca-gagttctttgctttcataaataatgtacaggttcttgcctaatgctttttccatagttagagtgaatatcttaagatagattgtta-----------gaaagcaaatttcccatgaaagggtg-tgtgta-tttAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123866221 266 + 133663169 atgtcataattttctcttaatattat---gagaaa--c---atttcatattaggaagtcatctgaggaaatattttcatggctctc--tat---a---ttccagtgagtgggctgacattagtttagttga----tctctagtaatttgacattttgtttgaaca-gagttatttgctttcataaataatgtgcaggttcttgcctaatgctttttcca----tagagtgaatatcttaagatagattgtta-----------gaaagcaaattgcccatgaaagggtg-tatgtattttaaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128174421 266 + 137757926 atgtcataattttctcttaatattat---gagaaa--c---atttcatattaggaagtcatctgaggaaatattttcatggctctc--tat---a---ttccagtgagtgggctgacattagtttagttga----tctctagtaatttgacattttgtttgaaca-gagttatttgctttcataaataatgtgcaggttcttgcctaatgctttttcca----tagagtgaatatcttaagatagattgtta-----------gaaagcaaattgcccatgaaagggtg-tatgtattttaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10579515 266 - 16319837 atgtcgtaattttctcttaatattat---gagaaa--c---atttcatattaggaagtcatctgaggaaatattttcatggctctc--tat---a---ttccagtgagtgggctgacattagtttagttga----tctctagtaatttgacattttgtttgaaca-gagttatttgctttcataagtaatgTGCAGGTTCTTGCCTAATGCTTTTTCCA----TAGAGTGAATATCTTAAGATAGATTGTTA-----------GAAAGCAAATTGCCCATGAAAGGGTG-TATGTATTTTAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12201331 270 + 20526591 atgtcataattttctcttaatattat---gagaaa--c---atttcatattaggaagtcatctgaggaaatattttcatggctctc--tat---a---ttccagtgagtgggctgacattagtttagttgattattctctagtaatttgacattttgtttgaaca-gagttatttgctttcataaataatgtgcaggttcttgcctaatgctttttcca----tagagtgaatatcttaagatagattgtta-----------gaaagcaaattgcccatgaaagggtg-tatgtattttaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119174251 266 + 128539186 atgtcataattttctcttaatattat---gagaaa--c---attttatattaggaagtcatctgaggaaatattttcatggctctc--tat---a---ttccagtgagtgggctgacattagtttagttgattattctctagtaatttgacattttgtttgaaca-gagttatttgctttcataaataatgtgcaggttcttgcctaatgctttttcca----tagagtgaatatcttaagatagattgtta-----------gaaagcaaattgcccatgaaagg-----gtgtattttaaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 487154 270 + 6255621 atgtcataattttctcttaatattat---gagaaa--c---atttcatattaggaagtcacctgaggaaatattttcatggctctc--tat---a---ttccagtgagtgggctgacattagtttagttgattattctctagtaatttgacattttgtttgaaca-gagttatttgctttcataaataatgtgcaggttcttgcctaatgctttttcca----tagagtgaatatcttaagatagattgtta-----------gaaagcaaattgcccatgaaagggtg-tgtgtattttaaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4550913 274 - 8658521 atgtcataattttctcttaatattat---gagaaa--c---atttcatattaggaagtcatctgaggaaatattttcatggctctc--tat---a---ttccagtgagtgggctgacattagtttagttgattattctctagtaatttgacattttgtttgaaca-gagttatttgctttcataaataatgtgcaggttcttgcctaatgctttttccatagttagagtgaatatcttaagatagattgtta-----------gaaagcaaattgcccatgaaagggtg-tgtgtattttaaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114754777 275 + 124281992 atcttataattttctcttaatattat---gagaaa--c---atttcatattaggaagtcacctgagaaaatattttcgtggctctctgtat---a---ctccagtgagcggtttgacattagtttagttgattattctctagaaattggacattttgtttgaaca-gaattctttgctttcataaataatgtgcaggttcatgcct-atgctttttccatagttagagtgaatatctgaagctagattgtta-----------gaaagcaaatcgcccatgaaagggtg-tgtgcattttaaa i calJac3.chr9 I 2 C 0 s cebCap1.NW_016107484v1 2813224 275 + 4466143 GTCTTATAATTTTTTCTTAATATTAT---GAGAAA--C---ATTTCATATTAGGAAGTCATCTGAGAAAATATTTTCATGGCTCTCTGTAT---A---TTCCAGTGAGTGGTTTGACATTAGTTTAGTTGATTATTCTCTAGTCATTTGACA-TTTGTTTGAACA-GAATTCTTTGCTTTCATAAATAATGTCCAGGTTCATGCCTAATGCTTCTTCCATAGTTAGAGTGAACATCTTAAGATAGATTGTTA-----------GAAAGCAAATTGCCCATGAAAGGGTG-GATGCATTTTAAA i cebCap1.NW_016107484v1 I 2 C 0 s aotNan1.NW_018491581v1 1508880 272 + 5364348 atcttataattttctcttaatattat---gagaaa--c---atttcatattaggaagtcatctgagaaaatattttcatggctctctgtat---a---ttccagtgagtggtttgacattagtttagttgattattctctagtaattggacattttgtttgatca-gaattctttgctttcataaataatgtgcaggttcgtgcctaatgctttttcca----tagggtgaatagcttaagatagattgtta-----------gaaagcaaattgcccatgaaagggtg-tatgcattttAAA i aotNan1.NW_018491581v1 I 2 C 0 s proCoq1.NW_012154285v1 6678010 272 - 9870158 aacttacaattttatcttaatattgt---gagaaa--c---atttcatattatgaagccatctgagaaaacattttaatggcttta--tatacca---ttccagtgaatgggctgacatta-----gttgactgttctctagtcatttgaccttttgtttcaaca-gaattctttgcttgcataaataatgtgtaggtttgtgcctaatggcttttccatatttaggatgaatatcttaaaacaagttgttg-----------gaagacaaattgcccgtgaaagggtg-tgctcactttaaa i proCoq1.NW_012154285v1 I 2 I 35 s otoGar3.GL873618 4244423 265 + 7922563 aactcataattttatcttaacattat---gacaga--c---attttattttatgaaaacatgagagaaaatattttaacagctttg--tatacta---ttccaattagtgggttggcattagtttggttgattgttccctagtaatttgacattttgtttgaaca-gaattcttagctttcataaataatgtgcaggtttgtgcctaatgttttttgcatgtttaggatgaatattttaagacatattgttg-----------ggaagcaaattgcccatgaaaggat--tg----------- i otoGar3.GL873618 I 2 C 0 s canFam3.chr26 33112240 266 - 38964690 ---TTCTAATTTTCTTTTAATATTAT---GAGAAAGGT---ATTTGATATTATGAAA----CTGAGAAAAGATTTTAATGCCTTTA--TAT---AATGTTCCAGTGAGTGGCTTGACATTACTTTAGTTGATTGTT-----ATAACGAGGCATCTTGTTTGAAGAGGAATTCTTTGCTTTCATAAATAATTTATGGGCTTGTGCCTTGTGTCTTTTC---ATTTAGGATGAATATCTTATGGGAGATTGTTG-----------GAAAGTAAATTGCCTGTGAAGAAGTATTGCCCATTTTAAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 784879 281 - 1116856 -----ataact---tcttaatattat---gaaaaa--cattattttatattatgaagccatttgagaaaatattttcatcgcttca--gataata---ttccagtgagtggcttgacctcagatgacttgattattctttaatagttggacattttg-ttgacct-aaattctttgctttcatcagtaatatgcaagttggtgcctaaggcttttcccatatttaggatgaatattttatgatcgattgttagaaggtaaattGAAGGTAAATTGCCCGTAAAAAAGTG-TGC-TCTTTTAAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e saiBol1.JH378194 399987 303 - 9212255 I a score=170845.000000 s hg38.chr12_KI270834v1_alt 9985 35 + 119498 gTCATTTCCAAAAAGGGTTGGACTGGTCATCACAG s panTro5.chr12 127296061 35 + 137163284 gTCATTTCCAAAAAGGGTTGGACTGGTCATCACAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647107 35 + 135337776 gTCATTTCCAAAAAGGGTTGGACTGGTCATCACAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160005 35 - 8369578 gTCGTTTCCAAAAAGGGTTGGACTggtcatcacag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97808457 35 + 106955855 GTCATTTCCAGAAAGGGATGGACTGGTCATCACAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123866487 33 + 133663169 gTCATCTCCAGAA--GGTTGGACTGGTCATCACAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128174687 33 + 137757926 gTCATCTCCAGAA--GGTTGGACTGGTCATCACAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10579781 33 - 16319837 GTCATCTCCAGAA--GGTTGGACTGGTCATCACAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12201601 33 + 20526591 gTCATCTCCAGAA--GGTTGGACTGGTCATCACAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119174517 35 + 128539186 gTCATCTCCAGAAAGGGTTGGACTGGTCATCACAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 487424 33 + 6255621 gTCATCTCCAGAA--GGTTGGACTGGTCATCACAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4551187 35 - 8658521 gTCATCTCCAGAAAGGGTTGGACTGGTCATCACAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114755052 11 + 124281992 gtcctttC------------------------TAG i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2813499 11 + 4466143 GTCCTTTC------------------------TAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1509152 11 + 5364348 GTCCTTTC------------------------TAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4244688 12 + 7922563 -----------------------tggctatcatta i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33112506 35 - 38964690 GTCCTTTTTGGAAAGGGTTGTGCCCGTCATCGCTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 785160 34 - 1116856 -ACCCTTCCAGAAAGGACATCACATATCCTcacag i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678282 35 - 9870158 I e saiBol1.JH378194 399987 303 - 9212255 I a score=372820.000000 s hg38.chr12_KI270834v1_alt 10020 36 + 119498 TGACT-----GTAGTTAGTGTGGCTGGGATTTTAACCCAGC s panTro5.chr12 127296096 36 + 137163284 TGGCT-----GTAGTTAGTGTGGCTGGGATTTTAACCCAGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647142 36 + 135337776 TGGCT-----GTAATTAGTGTGGCTGGGATTTTAACCCAGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160040 36 - 8369578 tggct-----gtagttagtgtggctgggattttaacccagc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97808492 37 + 106955855 TGGCT----GGTAATTAATGTGGCTGGGATTTTAACCCAGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123866520 37 + 133663169 TGGCT----GGTAGTTAGTGTGGCTGCGATTTTAACCCAGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128174720 37 + 137757926 TGGCT----GGTAGTTAGTGTGGCTGCGATTTTAACCCAGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10579814 37 - 16319837 TGGCT----GGTAGTTAGTGTGGCTGCGATTTTAACCCAGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12201634 37 + 20526591 TGGCT----GGTAGTTAGTGTGGCTGCGATTTTAACCCAGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119174552 37 + 128539186 TGGCT----GGTAGTTAGTGTGGCTGGGATTTCAACCCAGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 487457 37 + 6255621 TGGCT----GGTAGTTAGTGTGGCTGCGATTTTAACCCAGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4551222 37 - 8658521 TGGCT----GGTCGTTAGTGTGGCTGGGATTTTAACCCAGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114755063 34 + 124281992 TGGCT-------GGTTAGTGTGGCTGGGATTTTAACCCAGC i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2813510 34 + 4466143 TGGCT-------GGTTAGTGTGGCTGGGATTTTAACCCAGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1509163 34 + 5364348 TGGCT-------GGTTAGTGTGGCTGGGATTTTAACCCAGC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6678317 36 - 9870158 TGCCA-----CTAATCAGTGCGGCTGGGATTTTAACCCAGC i proCoq1.NW_012154285v1 I 35 I 942 s otoGar3.GL873618 4244700 32 + 7922563 tggct-----gttggtaGTGTGGTTGGGATTT--GCCCA-- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33112541 38 - 38964690 ---CCCTTAAGCCATTAGTGGGATGAAGGTCTTAACCCAGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 785194 37 - 1116856 ctgct----gagcattagtgagaccaggattttaacccagg i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e saiBol1.JH378194 399987 303 - 9212255 I a score=968259.000000 s hg38.chr12_KI270834v1_alt 10056 99 + 119498 TCTCCTGCTCTCAAAGCCCGGGTATTTTGCTACTTAGCTTTGCTGCTGTGTTCTTTAATTATAGGTGGCCAGTTCATGTTTTGATCTCTTTTATCCACT s panTro5.chr12 127296132 99 + 137163284 TCTCTTGCTCTCAAAGCCCGGGTATTTTGCTACTTAGCTTTGCTGCTGTGTTCTTTAATTATAGGTGGCCAGTTCATGTTTTGATCTCTTTTATCCACT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647178 99 + 135337776 TCTCTTGCTCTCAAAGCCCGGGTATTTTGCTACTTAGCTTTGCTGCTGTGTTCTTTAATTATAGGTGGCCAGTTCATGTTTTGATCTCTTTTATCCACT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160076 99 - 8369578 tctcttgctctcaaagcccgggtattttgctacttagcTTTGTTGCTGTGTCCTTTAATTATAGGTGGCCAGTTCATGTTTTGATCTCTTTTATCCACT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97808529 89 + 106955855 TCTCTTGCTCT----------GAATTTTGCTACTTATCTTTGCTGCTGTGTTCTTTAATTATAAGTGGCCAATTCATGTTTTGATCTGTTTTATCCACT i nomLeu3.chr10 C 0 M 100 s rheMac8.chr11 123866557 99 + 133663169 TCATTTGCTCTCAAAGCCTGGGTATTTTGCTACTTAGCTTTGCTGCTGTGTTCTTTAATTAGAGGTGGCCAGTTCATGTTTTTGTCTCTTTTATCCACT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128174757 99 + 137757926 TCATTTGCTCTCAAAGCCTGGGTATTTTGCTACTTAGCTTTGCTGCTGTGTTCTTTAATTAGAGGTGGCCAGTTCATGTTTTTGTCTCTTTTATCCACT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10579851 99 - 16319837 TCATTTGCTCTCAAAGCCTGGGTATTTTGCTACTTAGCTTTGCTGCTGTGTTCTTTAATTAGAGGTGGCCAGTTCATGTTTTTGTCTCTTTTATCCACT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12201671 99 + 20526591 TCATTTGCTCTCAAAGCCTGGGTATTTTGCTACTTAGCTTTGCTGCTGTGTTCTTTAATTAGAGGTGGCCAGTTCATGTTTTGGTCTCTTTTATCCACT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119174589 97 + 128539186 TCATTTGCTCTCAAAGCCTGGGTATTTTGCTACTTAGCTTTGCTGCTGTGTTCTTTAATTAGAGGTGGCCAGTTCATGTTTTGGTCTC--TTATCCACT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 487494 99 + 6255621 TCATTTGCTCTCAAAGCCTGGGTATTTTGCTACTTAGCTTTGCTGCTGTGTTCTTTAATTAGAGGTGGCCAGTTCATGTTTTGGTCTCTTTTATCCACT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4551259 99 - 8658521 TCATTTGCTCTCAAAGCCTGGGTATTTTGCTACTTAGCTTTGCTGCTGTGTTCTTTAATTAGAGGTGGCCAGTTCATATTTTGGTCTCTTTTATCCACT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114755097 99 + 124281992 TCACCTGCCCTCAAAGACTGGGTATTTTGCTACTTAGCTCTGCTGCTGTGTTCATTAATTACAGGTGGCCAGTTCATGTTTTGGTCTCTTTTATCCACT i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2813544 99 + 4466143 TCACCTGCCCTCAAAGACTGGGTATTTTGCTACTTAGCTCTGCTGCTGTGTTCATTAATTACAGGTGACCAGTTCATGTTTCGGTCTCTTTTATCCACT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1509197 99 + 5364348 TCACCTGCCCTCAAAGACTGGGTATTTTGCTACTTAGCTCTGCTGCTGTGTTCATTAATTACAGGTGGCCAGTTCATGTTTTGGTCTCTTTTATCCACT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4244732 89 + 7922563 ----CTCTGCTCAAAGCCAGGGTATTTTGTGACTTAGCTTTGCGGCTATATTCTTCAATTACGGGTGGGCAGTTCCTG------TCTTCTGAACATACT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33112579 35 - 38964690 ----------------------------------------------------------------GCTGCCTGCCCTCATTTGGGTCTCCTTTATCCATT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 785231 98 - 1116856 tcacttgaccccagagccggaaatctttgccacctggctctacagtTGTGTTTGTCAATTATGAATGGCCAG-TCATGTTTTGGTCTCCTTTATCCATT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e saiBol1.JH378194 399987 303 - 9212255 I a score=419633.000000 s hg38.chr12_KI270834v1_alt 10155 49 + 119498 AGAGTTTATAACTGTTTCATATAATTGTTGCATAAGCTC-TTTTTTTAAA s panTro5.chr12 127296231 49 + 137163284 AGAGTTTATAACTGTTTCATATAATTGTTGCATAAGCTC-TTTTTTTAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647277 49 + 135337776 AGAGTTTATAACTGTTTCATATAATTGTTGCATAAGCTC-TTTTTTTAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160175 49 - 8369578 AGAGTTCATAACTGTTTCATATAATTGTTGCATAAGCTC-TTTTTTTAAA i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123866656 48 + 133663169 AGTGTTTATAATTGTTTCATACCCAT-TTGCATAAGCTC-TTTTTTTAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128174856 48 + 137757926 AGTGTTTATAATTGTTTCATACCCAT-TTGCATAAGCTC-TTTTTTTAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10579950 48 - 16319837 AGTGTTTATAATTGTTTCATACCCAT-TTGCATAAGCTC-TTTTTTTAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12201770 48 + 20526591 AGCGTTTATAATTGTTTCATACCCAT-TTGCATAAGCTC-TTTTTTTAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119174686 48 + 128539186 AGCGTTTATAATTGTTTCATACTCAT-TTGCATAAGCTC-TTTTTTTAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 487593 48 + 6255621 AGTGTTTATAATTGTTTCATACCCAT-TTGCATAAGCTC-TTTTTTTAAA i manLeu1.NW_012103587v1 C 0 I 287 s colAng1.NW_012116043v1 4551358 48 - 8658521 AGCGTTTATAATTGTTTCATACCCAT-TTGCATAAGCTC-TTTTTTTAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114755196 48 + 124281992 AGCGTTTATAAGTGTTTCATACTCAT-TTGTACAAGCTC-TTTTTTTAAA i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2813643 48 + 4466143 GGAGTTTATAATTGTTTTATACTCAT-TTGCATGAGCTC-TTTTTTTAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1509296 48 + 5364348 AGAGTTTATAATTGTTTCATACTCAT-TTGCATAAGCTC-TTTTTTTAAA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4244821 48 + 7922563 ATAGTTTATAATTTTTTCTTATTCAT-TTGCATAGACTC-TTTAAAAAAA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33112614 48 - 38964690 AGAGTTGATAATATTTCCTTATTCAT-TTGCATAAGCTT-TTTTTTGAAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 785329 48 - 1116856 AGAGTTTAT-TTTTTTTGTTATCCAT-TTACATGAACTCGTTTTTTTAAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e saiBol1.JH378194 399987 303 - 9212255 I e nomLeu3.chr10 97808618 100 + 106955855 M a score=33840.000000 s hg38.chr12_KI270834v1_alt 10204 3 + 119498 CTT s panTro5.chr12 127296280 3 + 137163284 CTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647326 3 + 135337776 CTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160224 3 - 8369578 CTT i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123866704 3 + 133663169 CTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128174904 3 + 137757926 CTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10579998 3 - 16319837 CTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12201818 3 + 20526591 CTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119174734 3 + 128539186 CTT i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4551406 3 - 8658521 CTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114755244 3 + 124281992 CTT i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2813691 3 + 4466143 CTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1509344 3 + 5364348 CTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4244869 3 + 7922563 CTT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33112662 3 - 38964690 CTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 785377 3 - 1116856 CTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e saiBol1.JH378194 399987 303 - 9212255 I e manLeu1.NW_012103587v1 487641 287 + 6255621 I e nomLeu3.chr10 97808618 100 + 106955855 M a score=95716.000000 s hg38.chr12_KI270834v1_alt 10207 15 + 119498 -AAAAGAATTGTACAA s panTro5.chr12 127296283 15 + 137163284 -AAAAGAATTGTACAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647329 15 + 135337776 -AAAAGAATTGTACAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160227 15 - 8369578 -AAAAGAATTGTACAA i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123866707 15 + 133663169 -AAAAGAATTATACAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128174907 15 + 137757926 -AAAAGAATTATACAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10580001 15 - 16319837 -AAAAGAATAATACAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12201821 15 + 20526591 -AAAAGAATTATATAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119174737 15 + 128539186 -AAAAGAATTATACAA i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4551409 15 - 8658521 -AAAAGAATTATACAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114755247 15 + 124281992 -AAGGGACTTACTCAA i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2813694 15 + 4466143 -AAGAGACTTACACAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1509347 15 + 5364348 -AAGAGACTTACACAA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4244872 11 + 7922563 -AAG----ttatacaa i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 785380 16 - 1116856 AAAAAATATTACACAA i dasNov3.JH568189 C 0 I 1159 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e canFam3.chr26 33112665 0 - 38964690 C e saiBol1.JH378194 399987 303 - 9212255 I e manLeu1.NW_012103587v1 487641 287 + 6255621 I e nomLeu3.chr10 97808618 100 + 106955855 M a score=45617.000000 s hg38.chr12_KI270834v1_alt 10222 6 + 119498 CACATA s panTro5.chr12 127296298 6 + 137163284 CACATA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647344 6 + 135337776 CACATA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160242 6 - 8369578 GACATA i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123866722 6 + 133663169 CACATA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128174922 6 + 137757926 CACATA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10580016 6 - 16319837 CACATA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12201836 6 + 20526591 CACATA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119174752 6 + 128539186 CACATA i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4551424 6 - 8658521 CACATA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114755262 6 + 124281992 CACATA i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2813709 6 + 4466143 CACATA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1509362 6 + 5364348 CACATA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4244883 6 + 7922563 caaata i otoGar3.GL873618 C 0 I 184 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e canFam3.chr26 33112665 0 - 38964690 C e saiBol1.JH378194 399987 303 - 9212255 I e manLeu1.NW_012103587v1 487641 287 + 6255621 I e nomLeu3.chr10 97808618 100 + 106955855 M a score=646968.000000 s hg38.chr12_KI270834v1_alt 10228 100 + 119498 TCAggctgg--acggtgactcacgcctgtaatcccaggactttgggaggccgaggtgggcgatcacttgaagtcaggatttcgagaccagcctggccaatat s panTro5.chr12 127296304 100 + 137163284 TCAggctgg--acggtgactcacgcctgtaatcccaggactttgggaggccgaggtaggcgatcacttgaagtcaggatttcgagaccagcctggccaatat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647350 100 + 135337776 TCAggctgg--acggtgactcacgcctgtaatcccaggactttgggaggccgaggtaggcgatcacttgaagtcaggatttcgagaccagcctggccaatat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160248 100 - 8369578 TCAGGCTGG--ATggtgactcacgcctgtaatcccaggactttgggaggccgaggtgggcgatcacttgaagtcaggatttcgagaccaacctggccaatat i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123866728 102 + 133663169 TCAggccaggcacggtgactcacgcctgtaatcccaggactttgggaggctgaggtgggcgatcacttgaagtcaggagttcaagaccagcctggccaatgt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128174928 102 + 137757926 TCAggccaggcacggtgactcacgcctgtaatcccaggactttgggaggctgaggtgggcgatcacttgaagtcaggagttcaagaccagcctggccaatgt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10580022 102 - 16319837 TCAgaccaggcacggtgactcacgcctgtaatcccaggactttgggaggctgaggtgggcgatcacttgaagtcaggagttcaagaccagcctggccaatgt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12201842 102 + 20526591 TCAggccgggcacggtgactcacgcctgtaatcccaggactttgggaggccgaggtgggcgatcacttgaagtcaggagttcgagaccagcctggccaatgt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119174758 102 + 128539186 TCAggccaggcatggtgactcacgcctgtaatcccaggactttgggaggccgaggtgggcgatcacttgaagtcaggagttcaagaccagcctggccaatgt i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4551430 102 - 8658521 TCAggccgggcacggtgactcacacctataatcccaggactttgggaggccgaggtgggcgatcacttgaagtcaggagttcgagaccagcctggtcaatgt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114755268 102 + 124281992 TCAggccaggcatggtaactcacacctgtaatcccagcactttgggagggcaaggtgggtgatcactcaaagtcaggagttcgagaccagcctggccaacat i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2813715 102 + 4466143 TTAGTccaggcatgataactcatgcctgtaatcccagcactttgggagggcaaggtgggcgatcactcaaagtcaggagttcgagaccagcctggccaacat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1509368 102 + 5364348 GCAggccaggcatggtaactcacgcctgtaatcccagtactttgggagggcaaagtgggcgatcactcaaagtcaggagttcgagaccagcctggccaacat i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e canFam3.chr26 33112665 0 - 38964690 C e otoGar3.GL873618 4244889 184 + 7922563 I e saiBol1.JH378194 399987 303 - 9212255 I e manLeu1.NW_012103587v1 487641 287 + 6255621 I e nomLeu3.chr10 97808618 100 + 106955855 M a score=46200.000000 s hg38.chr12_KI270834v1_alt 10328 8 + 119498 gatgaaac s panTro5.chr12 127296404 8 + 137163284 ggtgaaac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647450 8 + 135337776 agtgaaac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160348 8 - 8369578 ggtgaaac i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123866830 8 + 133663169 ggtgaaac i rheMac8.chr11 C 0 I 22 s macNem1.NW_012010578v1 10580124 8 - 16319837 ggtgaaac i macNem1.NW_012010578v1 C 0 I 2539 s cerAty1.NW_012001186v1 12201944 8 + 20526591 ggtgaaac i cerAty1.NW_012001186v1 C 0 I 22 s chlSab2.chr11 119174860 8 + 128539186 ggtgaaac i chlSab2.chr11 C 0 I 22 s colAng1.NW_012116043v1 4551532 8 - 8658521 ggtgaaac i colAng1.NW_012116043v1 C 0 I 22 s calJac3.chr9 114755370 8 + 124281992 ggcgaaac i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2813817 8 + 4466143 ggtgaaac i cebCap1.NW_016107484v1 C 0 I 20 s aotNan1.NW_018491581v1 1509470 8 + 5364348 ggtgaaac i aotNan1.NW_018491581v1 C 0 I 20 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e canFam3.chr26 33112665 0 - 38964690 C e otoGar3.GL873618 4244889 184 + 7922563 I e saiBol1.JH378194 399987 303 - 9212255 I e manLeu1.NW_012103587v1 487641 287 + 6255621 I e macFas5.chr11 128175030 0 + 137757926 C e nomLeu3.chr10 97808618 100 + 106955855 M a score=6150.000000 s hg38.chr12_KI270834v1_alt 10336 9 + 119498 tctgtctct s panTro5.chr12 127296412 9 + 137163284 tctgtctct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647458 9 + 135337776 tctgtctct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160356 9 - 8369578 tctgtctgt i gorGor5.CYUI01015152v1 C 0 C 0 s calJac3.chr9 114755378 9 + 124281992 cccatctct i calJac3.chr9 C 0 I 699 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e canFam3.chr26 33112665 0 - 38964690 C e otoGar3.GL873618 4244889 184 + 7922563 I e aotNan1.NW_018491581v1 1509478 20 + 5364348 I e cebCap1.NW_016107484v1 2813825 20 + 4466143 I e saiBol1.JH378194 399987 303 - 9212255 I e colAng1.NW_012116043v1 4551540 22 - 8658521 I e manLeu1.NW_012103587v1 487641 287 + 6255621 I e chlSab2.chr11 119174868 22 + 128539186 I e cerAty1.NW_012001186v1 12201952 22 + 20526591 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I e macFas5.chr11 128175030 0 + 137757926 C e rheMac8.chr11 123866838 22 + 133663169 I e nomLeu3.chr10 97808618 100 + 106955855 M a score=129992.000000 s hg38.chr12_KI270834v1_alt 10345 241 + 119498 ctctctttttttttttt-gagacagagtctcgctctgtcgcccaggctggagtgcagtggcacaatcttgactctctgtaagctccacatcctgggttccggctgttctcctgcctcagcctcc-gagtagctgggactacaggtgcccaacaccacgcccggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatctg s panTro5.chr12 127296421 243 + 137163284 ctctctttttttttttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcacaatcttgactctctgtaagctccacatcctgggttccggctgttctcctgcctcagcttcccgagtagctgggactacaggtgcccaacaccacgcccggctaattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatctg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647467 241 + 135337776 ctctcttttttttttt--gagacagagtctcgctctgtcacccaggctggagtgcagtggcacaatcttgactctctgtaagctccacatcctgggttccggctgttctcctgcctcagcttcccgagtagctgggactacaggtgcccaacaccacgcccggctaattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatctg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160365 243 - 8369578 ctctctctttttttttttgagacagagtctcgctctgtcgcccaggctggagtgcagtggcataatcttgactctctgtaagctccacatcctgggttccggccgttctcctgcctcagcctcccgcgtagctgggactacaggtgcccaccaccacgcccggctaattttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtcgcaatctcctgacctcatgatctg i gorGor5.CYUI01015152v1 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e canFam3.chr26 33112665 0 - 38964690 C e otoGar3.GL873618 4244889 184 + 7922563 I e aotNan1.NW_018491581v1 1509478 20 + 5364348 I e cebCap1.NW_016107484v1 2813825 20 + 4466143 I e saiBol1.JH378194 399987 303 - 9212255 I e calJac3.chr9 114755387 699 + 124281992 I e colAng1.NW_012116043v1 4551540 22 - 8658521 I e manLeu1.NW_012103587v1 487641 287 + 6255621 I e chlSab2.chr11 119174868 22 + 128539186 I e cerAty1.NW_012001186v1 12201952 22 + 20526591 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I e macFas5.chr11 128175030 0 + 137757926 C e rheMac8.chr11 123866838 22 + 133663169 I e nomLeu3.chr10 97808618 100 + 106955855 M a score=48166.000000 s hg38.chr12_KI270834v1_alt 10586 56 + 119498 cccaccttggcctccaaaagtgctgggattacagatgtgagccactgtgcccagcc s panTro5.chr12 127296664 56 + 137163284 cccaccttggcctccaaaagtgctgggattacagatgtgagcccctgtgcccagcc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647708 56 + 135337776 cccaccttggcctccaaaagtgctgggattacagatgtgagcccctgtgcccagcc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160608 56 - 8369578 cccaccttggcctccaaaagtgctgggattacaggtgtgagccactgtgctcagcc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97808718 56 + 106955855 cccaccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcctggcc i nomLeu3.chr10 M 100 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e canFam3.chr26 33112665 0 - 38964690 C e otoGar3.GL873618 4244889 184 + 7922563 I e aotNan1.NW_018491581v1 1509478 20 + 5364348 I e cebCap1.NW_016107484v1 2813825 20 + 4466143 I e saiBol1.JH378194 399987 303 - 9212255 I e calJac3.chr9 114755387 699 + 124281992 I e colAng1.NW_012116043v1 4551540 22 - 8658521 I e manLeu1.NW_012103587v1 487641 287 + 6255621 I e chlSab2.chr11 119174868 22 + 128539186 I e cerAty1.NW_012001186v1 12201952 22 + 20526591 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I e macFas5.chr11 128175030 0 + 137757926 C e rheMac8.chr11 123866838 22 + 133663169 I a score=43030.000000 s hg38.chr12_KI270834v1_alt 10642 37 + 119498 ggtgaaactccgtctctact-aaaaatacaaaaaaaaa s panTro5.chr12 127296720 37 + 137163284 ggtgaaactccgtctctact-aaaaatacaaaaaaaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647764 38 + 135337776 ggtgaaactccgtctctactaaaaaatacaaaaaaaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160664 37 - 8369578 ggtgaaactccgtctctact-aaaaatacaaaaaaaaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97808774 37 + 106955855 agtgaaactccgtctctact-aaaaatacaaaaaaaaa i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128175030 35 + 137757926 ggtgaaaccccatctctact-aaaaattcagaaaaa-- i macFas5.chr11 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e canFam3.chr26 33112665 0 - 38964690 C e otoGar3.GL873618 4244889 184 + 7922563 I e aotNan1.NW_018491581v1 1509478 20 + 5364348 I e cebCap1.NW_016107484v1 2813825 20 + 4466143 I e saiBol1.JH378194 399987 303 - 9212255 I e calJac3.chr9 114755387 699 + 124281992 I e colAng1.NW_012116043v1 4551540 22 - 8658521 I e manLeu1.NW_012103587v1 487641 287 + 6255621 I e chlSab2.chr11 119174868 22 + 128539186 I e cerAty1.NW_012001186v1 12201952 22 + 20526591 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I e rheMac8.chr11 123866838 22 + 133663169 I a score=3822.000000 s hg38.chr12_KI270834v1_alt 10679 2 + 119498 aa s panTro5.chr12 127296757 2 + 137163284 aa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647802 2 + 135337776 aa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160701 2 - 8369578 aa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97808811 2 + 106955855 aa i nomLeu3.chr10 C 0 C 0 s cebCap1.NW_016107484v1 2813845 2 + 4466143 aa i cebCap1.NW_016107484v1 I 20 C 0 s aotNan1.NW_018491581v1 1509498 2 + 5364348 aa i aotNan1.NW_018491581v1 I 20 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e canFam3.chr26 33112665 0 - 38964690 C e otoGar3.GL873618 4244889 184 + 7922563 I e saiBol1.JH378194 399987 303 - 9212255 I e calJac3.chr9 114755387 699 + 124281992 I e colAng1.NW_012116043v1 4551540 22 - 8658521 I e manLeu1.NW_012103587v1 487641 287 + 6255621 I e chlSab2.chr11 119174868 22 + 128539186 I e cerAty1.NW_012001186v1 12201952 22 + 20526591 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I e macFas5.chr11 128175065 0 + 137757926 C e rheMac8.chr11 123866838 22 + 133663169 I a score=788077.000000 s hg38.chr12_KI270834v1_alt 10681 150 + 119498 aaaaa----------------------------------------ttagccaggcatggtggtgcatgcctgtaatcccagctactcgggaggctgaggtgggaggatcgcttgaacccaggaggtgaaggttgcagtgaactgagatcgtgacac--cactctagcctgggtgacagagtgagactctgtc s panTro5.chr12 127296759 190 + 137163284 aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattagccaggcatggtggtgcatgcctgtaatcccaactactcgagaggctgaggtgggaggatcgcttgaacccaggaggtgaaggttgcagtgaactgagatcgtgacac--cactctagcctgggtaacagagtgagactctgtc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647804 150 + 135337776 aaaaa----------------------------------------attgccaggcatggtggtgcatgcctgtaatcccaactactcgggaggctgaggtgggaggatcgcttgaacccaggaggtgaaggttgcagtgaactgagatcgtgacac--cactctagcctgggtaacagagtgagactctgtc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160703 157 - 8369578 aaaaa---------------------------------aaaaaaattagccaggcatggtggtgcatgcctgtaatcccagctactcgggaggctgaggtgggaggatcgcttgaacccaggaggtgaaggttgcagtgaactgagatcgtgacac--cactctagcctgggtgacagagtgagactctgtc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97808813 154 + 106955855 aaaaa------------------------------------aaaattagccaggcatggtagtacatgcctgtaatcccagctactcgggaggctgaggtgggaggatcgcttgaacccaggaggtgaaggttgcagtgagctgagatcgcgacac--cactctagcctgggtgacagagtgagactctgtc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123866860 152 + 133663169 aaaaa----------------------------------------ttagccagacgtggtggtgcatgcctgtaatcctagctactcaggaggctgaggtgggaggattgcttgaacccgggaggtgaaggttgcagtgagctgagatgtcgacactgcactctagcctgggtgacagagtgagactccgcc i rheMac8.chr11 I 22 C 0 s macFas5.chr11 128175065 147 + 137757926 ---------------------------------------------ttagccagacgtggtggtgcatgcctgtaatcccagctactcaggaggctgaggtgggaggattgcttgaacccgggaggtgaaggttgcagtgagctgagatgtcgacactgcactctagcctgggtgacagagtgagactccgcc i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12201974 152 + 20526591 aaaaa----------------------------------------ttagccaggcgtggtggtgcatgcctataatcccagctactcaggaggctgaggtgggaggattgcttgagcccgggaggtgaaggttgcagtgagctgagatgtcgacactgcactctagcctgggtgacagagtgagactccgcc i cerAty1.NW_012001186v1 I 22 C 0 s chlSab2.chr11 119174890 152 + 128539186 aaaaa----------------------------------------ttagccagacgtggtggtgcatgcctgtaatcccagctactcaggagactgaggtgggaggattgcttgaactcgggaggtgaaggttgcagtgagctgagatgtcgacactgcactctagcctgggtgacagagtgagactccgtc i chlSab2.chr11 I 22 C 0 s colAng1.NW_012116043v1 4551562 152 - 8658521 aaaaa----------------------------------------ttagccagatgtggtggtgcatgcctgtaatcccagctactcaggaggctgaggtgggaggattgcttgaacctgggaggtgaaggttgcagtgagctgagatgtcgacactgcactctagcctgggtgacagagtgagactccgcc i colAng1.NW_012116043v1 I 22 C 0 s cebCap1.NW_016107484v1 2813847 152 + 4466143 aaaaa----------------------------------------ttagccaggtgtggtggtgcatgtctgtaatcgtagctacttgggaggttgaggtgggaggatcacttgaacctgggaggtgaaggttgcagcgaagggggattgcagcactgcactctagcctgggtgacagagcgagactccatt i cebCap1.NW_016107484v1 C 0 I 24 s aotNan1.NW_018491581v1 1509500 152 + 5364348 aaaaa----------------------------------------ttagccaggtgtggtggtgcatgtctgtaatcgtagctactcgggaggctgaggtgggaggatcacttgaacctgggaggtgaaggttgcagtgaactgagattgcaacactgcactctagcctgggtgacagagcgagactccatt i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e canFam3.chr26 33112665 0 - 38964690 C e otoGar3.GL873618 4244889 184 + 7922563 I e saiBol1.JH378194 399987 303 - 9212255 I e calJac3.chr9 114755387 699 + 124281992 I e manLeu1.NW_012103587v1 487641 287 + 6255621 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=34789.000000 s hg38.chr12_KI270834v1_alt 10831 21 + 119498 t-c-aaaaaaaaaa--gaaaaaaga s panTro5.chr12 127296949 22 + 137163284 t-c-aaaaaaaaaaa-gaaaaaaga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647954 23 + 135337776 tac-aaaaaaaaaaa-gaaaaaaga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160860 21 - 8369578 t-c-aaaaaaaaaa--gaaaaaaga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97808967 23 + 106955855 t-c-aaaaaaaaaaagaaaaaaaga i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123867012 23 + 133663169 t-caaaaaaaaaaaa-aaaaaaaaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128175212 23 + 137757926 t-caaaaaaaaaaaa-aaaaaaaaa i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12202126 16 + 20526591 t-c-------aaaaa-aaaaaaaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119175042 15 + 128539186 t-c--------aaaa-aaaaaagaa i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4551714 17 - 8658521 t-c------aaaaaa-aaaaaaaaa i colAng1.NW_012116043v1 C 0 C 0 s aotNan1.NW_018491581v1 1509652 18 + 5364348 ------tcaaaaaaa-aaaaaaaTT i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e canFam3.chr26 33112665 0 - 38964690 C e otoGar3.GL873618 4244889 184 + 7922563 I e cebCap1.NW_016107484v1 2813999 24 + 4466143 I e saiBol1.JH378194 399987 303 - 9212255 I e calJac3.chr9 114755387 699 + 124281992 I e manLeu1.NW_012103587v1 487641 287 + 6255621 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=49959.000000 s hg38.chr12_KI270834v1_alt 10852 15 + 119498 aaaagaagaattata s panTro5.chr12 127296971 15 + 137163284 AAAAGAAGAattata i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647977 15 + 135337776 aaaagaagaaTTATA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160881 15 - 8369578 aaaagaagaaTTACA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97808990 15 + 106955855 aaaagaaaaATTACA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123867035 15 + 133663169 aaaagaaGACTAACA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128175235 15 + 137757926 aaaaaaaGACTAACA i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12202142 15 + 20526591 aaaagaaGACTAACA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119175057 15 + 128539186 aaaaaaagaaTAACA i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4551731 15 - 8658521 aaaagaagaaTAACA i colAng1.NW_012116043v1 C 0 C 0 s aotNan1.NW_018491581v1 1509670 13 + 5364348 ACACAACGAATGC-- i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33112665 15 - 38964690 AAGAAAAAAATCACA i canFam3.chr26 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e otoGar3.GL873618 4244889 184 + 7922563 I e cebCap1.NW_016107484v1 2813999 24 + 4466143 I e saiBol1.JH378194 399987 303 - 9212255 I e calJac3.chr9 114755387 699 + 124281992 I e manLeu1.NW_012103587v1 487641 287 + 6255621 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=4778.000000 s hg38.chr12_KI270834v1_alt 10867 2 + 119498 ca s panTro5.chr12 127296986 2 + 137163284 ca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647992 2 + 135337776 CA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160896 2 - 8369578 CA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97809005 2 + 106955855 CA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123867050 2 + 133663169 TG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128175250 2 + 137757926 TG i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12202157 2 + 20526591 TG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119175072 2 + 128539186 TG i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4551746 2 - 8658521 TG i colAng1.NW_012116043v1 C 0 C 0 s cebCap1.NW_016107484v1 2814023 2 + 4466143 CA i cebCap1.NW_016107484v1 I 24 C 0 s aotNan1.NW_018491581v1 1509683 2 + 5364348 CA i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33112680 2 - 38964690 CA i canFam3.chr26 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e otoGar3.GL873618 4244889 184 + 7922563 I e saiBol1.JH378194 399987 303 - 9212255 I e calJac3.chr9 114755387 699 + 124281992 I e manLeu1.NW_012103587v1 487641 287 + 6255621 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=1202106.000000 s hg38.chr12_KI270834v1_alt 10869 198 + 119498 acaa----------atatcaattcattacagaatactttagaaattacaaaaagccaag-aaaaaaaagaaaggaagaaaaaaatacctataatcccctt-gcccagggtaaccattttaatag---------ttgagcatatatctttccagaa--catttattcctgcataaacatacaaatagata-taAATAAATAAATAACATTCTACAAAATATGA s panTro5.chr12 127296988 194 + 137163284 acaa----------atatcatttcattacagaatactttagaaattacaaaaagccaag-aaaaaaaagaaaggaagaaaaaaatacctataatcccctt-gcccagggtaaccattttaatag---------ttgagcatatatctttccagaa--tatttattcctgcataaacatacaaatagata-taAATAAATAA----CATTCTACAAAATATGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125647994 193 + 135337776 ACAA----------ATATCATTTCATTACAGAATACTTTAGAAATTACAAAAAGCCaag--aaaaaaagaaaggaagaaaaaaaTACCTATAAtcccctt-gcccagggtaaccattttaatag---------ttgagcatatatctttccagaa--tatttattcctgcataaacatacaaatagata-taaataAATAA----CATTCTACAAAATATGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8160898 198 - 8369578 ACAA----------ATATCAATtcattacagaatactttagaaattacaaaaagccaag-aaaaaaaagaaaggaagaaaaaaatacctataatcccctt-gcccagggtaaccattttaatag---------ttgagcatatatctttccagaa--tgtttattcctgcataaacatacaaatagata-taAATAAATAAATAACATTCTACAAAATATCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97809007 217 + 106955855 ACAAATATCAATTCATATCAATTCATTACAGAATGCTTTAGAAATTACAAAAAGCCAAG-AAAAAAAAGAAATGAAGAAAAAAATACCTGTAATCCCCTT-GCCCAGGGTAACCATTTTAACAGTTAACCATTTTAACCATGTATCTTTCCAGAA--TGTTTATTCCTACATAAACATACAAATAGATA-TAGATGAATAAATAACATTCTACAAAATAGGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123867052 197 + 133663169 ACAA----------ATATCAATTTATTACAGAATGCtttagaaattacaaaaagccaag--aaaaaaagaaaggaaggaaaaagtacctataatctcctt-gcccagggtaaccattttaacgg---------ttgagcatgtagctttgtggaa--tgtttattcctgcataaacatacaaatatatg-tagataAATAAATAACATTCTACAAAATAGGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128175252 197 + 137757926 ACAA----------ATATCAATttattacagaatgctttagaaattacaaaaagccaag--aaaaaaagaaaggaaggaaaaagtacctataatctcctt-gcccagggtaaccattttaacgg---------ttgagcatgtagctttgtggaa--tgtttattcctgcataaacatacaaatatatg-tagataAATAAATAACATTCTACAAAATAGGA i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12202159 198 + 20526591 ACAA----------ATATCAATTCATTACAGAATGCTTTAGAAATTACAAAAAGCCAAG-AAAAAAAAGAAAGGAAGGAAAAAGTACCTATAATCCCCTT-GCCCAGGGTAACCATTTTAACGG---------TTGAGCATGTAGCTTTCTGGAA--TGTTTATTCCTGCATAAACATACAAATATATG-TAGATAAATAAATAACATTCTACAAAATAGGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119175074 199 + 128539186 ACAa----------atatcaattcattacagaatgctttagaaattacaaaaagccaagaaaaaaaaagaaaggaagaaaaaagtacctataatcccctt-gcccagggtaacgattttaacgg---------ttgagcatctagctttctggaa--tgtttattcctgcataaacatacaaatatatg-tagataAATAAATAACATTCTACAAAATAGGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 487928 198 + 6255621 ACAA----------ATATCAATtcattacagaatgctttagaaattacaaaaagccaag-aaaaaaaagaaaggaaggaaaaagtacctataatcccctt-gcccagggtaaccattttaacgg---------ttgagcatgtagctttgtggaa--tgtttattcctgcataaacatacaaatatatg-tagataAATAAATAACATTCTACAAAATAGGA i manLeu1.NW_012103587v1 I 287 C 0 s colAng1.NW_012116043v1 4551748 199 - 8658521 ACAA----------GTATCAATtcattacagaatgctttagaaattacaaaaagccaag-aaaaaaaaggaaggaagaaaaaagtacctataatccccttggcccagggtaaccattttaacgg---------ttgagcatgtagctttctggaa--tgtttattcctgcataaacatacaaatatata-tagataAATAAATAACATTCGACAAAATAGGA i colAng1.NW_012116043v1 C 0 C 0 s cebCap1.NW_016107484v1 2814025 191 + 4466143 ----------ATTCATATCAgttcattacagaatggtttagaaattataaaaagccaag-aa-------aaaggaagcaaaaagtccctccagtcccctt-acccagcgtaaccgtcttaacag---------ctgagcatatgtctttccagaa--cgtttattccttcacaaacatacacatagata-tcgataaataaataacattttaaaaaatggga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1509685 194 + 5364348 ----------GTTCATATCAgttcattacagaatggtttagaaattacaaaaagccaag-aa---aaagaaaggaagaaaaaagtccctccaatctcctt-gcccagcgtaaccttc-taacag---------ctgagcgtatgtctctccagaa--cgtttactccttcacgagcatatacctagata-tcgataaataaataacattttacaaaatggga i aotNan1.NW_018491581v1 C 0 I 8 s canFam3.chr26 33112682 179 - 38964690 --------------GTGGatatttattatagaaggatttagaaactataaaaaa--aag-ca---------------aaaaaattacctataatcccac--acccaagataaccgttttgacag---------gttaacatatatatttccagaatttgtttattcctgtgtcaacatataaataaatattccataaaataatatcattctTACCAATATGA i canFam3.chr26 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e otoGar3.GL873618 4244889 184 + 7922563 I e saiBol1.JH378194 399987 303 - 9212255 I e calJac3.chr9 114755387 699 + 124281992 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=-1862.000000 s hg38.chr12_KI270834v1_alt 11067 3 + 119498 TTG s panTro5.chr12 127297182 3 + 137163284 TTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125648187 3 + 135337776 TTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8161096 3 - 8369578 TCG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97809224 3 + 106955855 TAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123867249 3 + 133663169 TCG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128175449 3 + 137757926 TCG i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12202357 3 + 20526591 TCG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119175273 3 + 128539186 TCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 488126 3 + 6255621 TTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4551947 3 - 8658521 TCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114756086 2 + 124281992 tt- i calJac3.chr9 I 699 I 2 s cebCap1.NW_016107484v1 2814216 2 + 4466143 tc- i cebCap1.NW_016107484v1 C 0 I 10 s aotNan1.NW_018491581v1 1509887 2 + 5364348 tt- i aotNan1.NW_018491581v1 I 8 I 2 s canFam3.chr26 33112861 3 - 38964690 TCA i canFam3.chr26 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e otoGar3.GL873618 4244889 184 + 7922563 I e saiBol1.JH378194 399987 303 - 9212255 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=215345.000000 s hg38.chr12_KI270834v1_alt 11070 37 + 119498 ttc------------tttttttttttt-------agagacgaggtcttgccttgtt s panTro5.chr12 127297185 38 + 137163284 ttc------------ttttttttttttt------agagacgaggtcttgctttgtt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125648190 36 + 135337776 ttt------------ctttttttttt--------agagacgaggtcttgctttgtt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8161099 38 - 8369578 ttc------------ttttttttttttt------agagacgaggtcttgctttgtt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97809227 37 + 106955855 ttc------------tttttttttttt-------agagacgaggtctcgctttgtt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123867252 47 + 133663169 ttc----tt-----ttttttttttttttctttaaagagacgaggtcttgctttgtt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128175452 44 + 137757926 ttc------------tttttttttttttctttaaagagacgaggtcttgctttgtt i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12202360 43 + 20526591 ttc-------------ttttttttttttctttaaagagacgaggtcttgctttgtt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119175276 51 + 128539186 ttctttttt-----ttttttttttttttttttaaagagacgaggtcttgctttgtt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 488129 44 + 6255621 ttc------------tttttttttttttctttaaagagacgaggtcttgctttgtt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4551950 47 - 8658521 ttc----tt-----ttttttttttttttttttaaagagacgaggtcttgctttgtt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114756090 37 + 124281992 --------------cttttctttttttt-----aagagacaaggtcttactttgtt i calJac3.chr9 I 2 C 0 s saiBol1.JH378194 400290 37 - 9212255 --------------tttttttttttttt-----aagagacaaggtctcactttgtt i saiBol1.JH378194 I 303 C 0 s cebCap1.NW_016107484v1 2814228 31 + 4466143 --------------cttttctttttttt-----aagagaccagg------tttgtt i cebCap1.NW_016107484v1 I 10 C 0 s aotNan1.NW_018491581v1 1509891 37 + 5364348 --------------cttttctttttttt-----aagagacaaggtctcactttgtt i aotNan1.NW_018491581v1 I 2 C 0 s canFam3.chr26 33112864 44 - 38964690 ------TTTAAAAAATATACAtcttttt------aaaaagatgttatttatttatt i canFam3.chr26 C 0 I 221 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e otoGar3.GL873618 4244889 184 + 7922563 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=1559170.000000 s hg38.chr12_KI270834v1_alt 11107 239 + 119498 gcccaagctggagtgcagtggtgtgatcatagctcactgcagcctccaactcctgggctcat-atgatcctc--gccttggcctcccaggtagctgggactgcaggtatgcaccaccacacccggctaacttaaaaaaaaaaaaa----------------------tttttttt--------------------ttttttttttagtagagatggagtcttgttctgttgcccagtctggtctcaaactcctggtctcaaacaatcctcctaatcctcctgtc s panTro5.chr12 127297223 256 + 137163284 gcccaagctggagtgcagtggtgtgatcatagctcactgcagcctccaactcctgggctcat-atgatcctc--gccttggcctcccaggtagctgggactgcaggtatgcaccaccacacccggctaactttaaaaaaaaaaaaaaaa-----ttttttttttttttttttttt--------------------ttttttttttagtagagatggagccttgttctgttgcccagtctggtctcaaactcctggtctcaaacaatcctcctaatcctcctgtc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125648226 227 + 135337776 gcccaagctggagtgcagtggtgtgatcatagctcactgcagcctccaactcctgggctcat-atgatcctc--gccttggcctcccaggtagctgggactgcaggtatgcaccaccacac------------------------------------------------------nnnnnnnnnnnnnnnnnnnnttttttttttagtagagatggagtcttgttctgttgcccagtctggtctcaaactcctggtctcaaacaatcctcctaatcctcctgtc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8161137 261 - 8369578 gcccaagctggagtgcagtggtgtaatcatagctcactgcagcctccaactcctgggctcat-atgatcctc--gccttggcctcccaggtagctgggactgcaggtatgcaccaccacacccggctaactttaaaaaaaaaaaaaaaaagttgttttttttgtttgtttgtttt--------------------tgttttttttagtagagatggagtcttgttctgttgcccagtctggtctcaaactcctggtctcaaacaatcctcctaatcctcctgtc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97809264 237 + 106955855 gcccaagctggagtgcagcggtgtgatcatagctcactgcagcctccagctcctgggctcat-atgatcctc--gccttggcctcccaggtagctgggactacaggtgtgcaccaccacacccagctaacttaaaa---------------tttttttttttttttttttttttt--------------------ttttttttttagtagagatggagttttgctctgttgcccaggctggtctcaaactcctggcctcaaac---------aatcctcctgcc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123867299 215 + 133663169 gccca-----------------gtgatcaaagctcactgcagcctccaactcctgggctcat-atgatcctc--acgttggcctcccgggtagctaggacgacaggtgtgcaccaccacacctagctaacttaaaaaaaaaaaaaagg-----------------tttttttttt--------------------ctttttttttagtagcgatggagttttgctgtatcacccagactggtctcagactcctggcctcaaac---------aa---tcctgcc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128175496 215 + 137757926 gccca-----------------gtgatcaaagctcactgcagcctccaactcctgggctcat-atgatcctc--acgttggcctcccgggtagctaggacgacaggtgtgcaccaccacacctagctaacttaaaaaaaaaaaaaagg-----------------tttttttttt--------------------ctttttttttagtagcgatggagttttgctgtatcacccagactggtctcagactcctggcctcaaac---------aa---tcctgcc i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12202403 215 + 20526591 gccca-----------------gtgatcaaagctcactgcagcctccaactcctgggctcat-atgatcctc--gccttggcctcccgggtagctgggacgacaggtgtgcaccaccacacctagctaactt---aaaaaaaaaaagg-----------------tttttttttt--------------------ctttttttttagtagcgatggagttttgctttatcgcccaggctggtctcagactcctggcctcaaac---------aatcctcctgcc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119175327 203 + 128539186 gccca-----------------gtgatcatagctcactgcagcctccaactcctgggctcat-atgatcctc--gccttggcctcccgggtagctgagactacaggtgtgcaccaccacacctagctaacttaaaaagctaa--------------------------------c--------------------tttcttttttagtagcgatggagttttgctctatcgcccaggctggtctcagactcctggcctcaaac---------gatcctcctgcc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 488173 218 + 6255621 gccca-----------------gtgatcaaagctcactgcagcctccaactcctgggctcat-atgatcctc--gccttggcctcccgggtagctgggacgacaggtgtgcaccaccacacctagctaacttaaaaaaaaaaaaaggt-----------------tttttttttc--------------------ttttttttttagtagcgatggagttttgctctatcgcccaggctggtctcagactcctggcctcaaac---------aatcctcctgcc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4551997 215 - 8658521 gccca-----------------gtgatcatagctcactgcagcctccaactcctgggctcat-atgatcctc--gccttggcctcccaggtagctgggactacaggtgtgcaccaccacacctagctaactt---aaaaaaaaaaagg-----------------tttttctttc--------------------ttttttttttagtagcgatggagttttgctctatcgcccaggctggtctcagactcctggcctcaaac---------aatcctcctgcc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114756127 232 + 124281992 gcccaggctggagtgcagtcgtgtgatcatagcccactgcagcctccaactcctaggctcag-atgatcctcctgccttggcctcccaggtagctgggactacaggtgtgtaataccccacctggctaacttaaaaaaaagtt----------------------tgtttttgtt--------------------tttattttttagtagagatggagacttgctgtattgcccacgctggtcacaaactcctggcctcaaac---------gattctcctgcc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 400327 232 - 9212255 gcccaggctggagtgcagtggtgtgatcatagcccactgcagcctccaactcctgggctcag-atgatcctcctgccttggcctcccaggtagctgggactacaggtgtgaaataccgcacttggctaacttaaaaaaaagtt----------------------tgtttttgtt--------------------tttattttttagtagagatggagacttgctgtgttgcccaggctggtctcaaactcctggcctcagac---------aattctcctgtc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2814259 233 + 4466143 gcccaggctggagtgcagtcgtgtgatcatagcccactgcagcctccaactcctgggctcaatatgatcctcctgccttgccctcccaggtagctgagactacacgtgtgtaataccccacctggctaacttaaaaacaagtt----------------------tgtttttgtt--------------------tttattttttagtggagatggagacttgctgtgttgcccaggctggtctcaaactcctggcctcaaat---------gattctcctgcc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1509928 232 + 5364348 gcccaggctggagtgcagtcatgtgatcatagcccactgcagcctccaactcctgggctcag-atgatcctcctgccttggcctcccaggtagctgggactacaggtgtgtaacaccccacctggctacctttaaaaaaagtt----------------------tgtttttgtt--------------------cttattttttagtagagatggagacttgctgtgttgcccaggctggtctcaaactcctggcctcaaac---------aattctcctgcc i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e canFam3.chr26 33112908 221 - 38964690 I e otoGar3.GL873618 4244889 184 + 7922563 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=245599.000000 s hg38.chr12_KI270834v1_alt 11346 31 + 119498 ttagtctcccaaagcactgggattacaggct s panTro5.chr12 127297479 31 + 137163284 ttagtctcccaaagcactgggattacaggAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125648453 31 + 135337776 ttagtctcccaaagcactgggattacaggAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8161398 31 - 8369578 ttagtctcccaaagcactgggattacaggct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97809501 31 + 106955855 ttaatctcccaaagcactgggtttacaggcg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123867514 31 + 133663169 ttactctcccaaagcactgggtttacaggca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128175711 31 + 137757926 ttactctcccaaagcactgggtttacaggca i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12202618 31 + 20526591 ttactctcccaaagcactgggtttacaggca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119175530 31 + 128539186 ttgctcccccaaagcactgggtttacaggca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 488391 31 + 6255621 ttactctcccaaagcactgggtttacaggca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4552212 31 - 8658521 ttactctcccaaagcactgggtttacaggca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114756359 31 + 124281992 ttggtctcacaaagcactgggattacaggcg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 400559 31 - 9212255 ttggtctcacaaagcactaggattacaggca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2814492 31 + 4466143 ttggtctcacaaagcgctgggattacaggag i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1510160 31 + 5364348 ttggtctcaaaaagcactgggattacaggca i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33113129 26 - 38964690 TTGCTTTCATAAATAAC-----TTGTGGGCT i canFam3.chr26 I 221 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e dasNov3.JH568189 785396 1159 - 1116856 I e otoGar3.GL873618 4244889 184 + 7922563 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=32832.000000 s hg38.chr12_KI270834v1_alt 11377 3 + 119498 tga s panTro5.chr12 127297510 3 + 137163284 TGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125648484 3 + 135337776 TGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8161429 3 - 8369578 tga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97809532 3 + 106955855 tga i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123867545 3 + 133663169 tga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128175742 3 + 137757926 tga i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12202649 3 + 20526591 tga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119175561 3 + 128539186 tga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 488422 3 + 6255621 tga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4552243 3 - 8658521 tga i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114756390 3 + 124281992 tga i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 400590 3 - 9212255 tga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2814523 3 + 4466143 tga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1510191 3 + 5364348 tga i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33113155 3 - 38964690 TGT i canFam3.chr26 C 0 I 7 s dasNov3.JH568189 786555 3 - 1116856 taa i dasNov3.JH568189 I 1159 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e otoGar3.GL873618 4244889 184 + 7922563 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=4307171.000000 s hg38.chr12_KI270834v1_alt 11380 484 + 119498 AAATAGAATCATTCTTACCAATGTCACTGGCTATTTTTATTGAACA-GTTT-GACCTATTTCAATAAATAAACATTGAAATTATCACTCACAGCAG-----------------------ATGATTGAcctg--------ttgctggacattgaggctatttcttt-------------c--tttt-------tctgctatgatgaagaa-tgctgcagtgaatattct-gtatatacaaattgctcacaGTGGAATTGCCAGCttcctttactcagcaagtgttgaatgggcgcctactgtgtgtaagcacttctgtagggtggggtggggctcatcagtgaaca-----aaaca----aa--aaaatcctttccctgcgcagctggccttcttacgggataacga-------aaag----------a---aaaaccagaaaccagttagttacatgtagtacattagaaggtgctaaggatatgCATGTTTAAAAA------------TGATAAATGGATCCCCTGAAAGCCAATGGCACTGGGCAGCTTGTCAGTTTTG-TCTCG-GCCGTGCC-TGGGCTCTGG s panTro5.chr12 127297513 484 + 137163284 AAATAGAATCATTCTTACCAATGTCACTGGCTATTTTTATTGAACA-GTTT-GACCTATTTCAATAAATACACATCGAAATTATCACTCACAGCAG-----------------------ATGATTGAcctg--------ttgctggacattgaggctatttcttt-------------c--tttt-------tctgctatgatgaagaa-tgctgcagtgaatattct-gtatatacaaattgctcacaGTGGAATTGCCAGCttcctttactcagcaagtgttgaacgggcgcctactgtgtgtaagcacttctgtagggtggggtggggctcatcagtgaaca-----aaaca----aa--aaaatcctttccctgcgcagctggccttcttatgggataacga-------aaag----------a---aaaaccagaaaccagttagttacatgtagtacattagaaggtgctaaggatatgCATGTTTAAAAA------------TGATAAATGGATCCCCTGAAAGCCAATGGCACTGGGCAGCTTGTCAGTTTTG-TCTCG-GCCGTGCC-TGGGCTCTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125648487 484 + 135337776 AAATAGAATCATTCTTACCAATGTCACTGGCTATTTTTATTGAACA-GTTT-GACCTATTTCAATAAATACACATCGAAATTATCACTCACAGCAG-----------------------ATGATTGAcctg--------ttgctggacattgaggctatttcttt-------------c--tttt-------tctgctatgatgaagaa-tgctgcagtgaatattct-gtatatacaaattgctcacaGTGGAATTGCCAGCttcctttactcagcaagtgttgaatgggcgcctactgtgtgtaagcacttctgtagggtggggtggggctcatcagtgaaca-----aaaca----aa--aaaatcctttccctgcgcagctggccttcttatgggataacga-------aaag----------a---aaaaccagaaaccagttagttacatgtagtacattagaaggtgctaaggatatgCATGTTTAAAAA------------TGATAAATGGATCCCCTGAAAGCCAATGGCACTGGGCAGCTTGTCAGTTTTG-TCTCG-GCCGTGCC-TGGGCTCTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8161432 483 - 8369578 AAATAGAATCATTCTTACCAATGTCACTGGCTATTTTTATTGAACA-GTTT-GACCTATTTCAATAAATAAACATCAAAATTATCACTCACAGCAG-----------------------ATGATTGAcctg--------ttgctggacattgaggctatttcttt-------------c--tttt-------tctgctatgatgaagaa-tgctgcagtgaatatttt-gtatatACAAATTGCTCACAGTGGAATTGCCAGCttcctttactcagcaagtgttgaatgggcgcctactgtgtgtaagcacttctgtagggtggggtggggcccatcagtgaaca-----aaaca----aa--aaaatcctttccctg-gcagctggccttcttatgggataacga-------aaag----------a---aaaaccagaaaccagttagttacatgtagtacattagaaggtgctgaggatatgCATGTTTAAAAA------------TGATAAATGGATCCCCTGAAAGCCAATGGCCCTGGGCAGCTTGTCAGTTTCG-TCTCG-GCCGTGCC-TGGGCTCTGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97809535 477 + 106955855 AAATAGAATCATTCTTACCAATATCATTGGCTATTTTCATTGAACA-GTTT-GACCTATTTCAATAAATAAACATCGAAATTATCACTCACAGCAG-----------------------ATGATTGAcctg--------ttgctggacattgaggcta----ttt-------------c--tttt-------tctgccgtgatgaagaa-tgctgctgtgaatattct-gtatatacaaattgctcacaGTGGATTTGTGAGCttcctttactcagcaaatgttgattgggtgcctactgtgtgt-agcacttctgtagggtggggtggggcccatcagtgaaca-----aaaca----aa--aaagtcctttccccatgcagctggccttcttgtggggtaacgg-------aaag--------------aaaaccagaaaccagttagttacatgtagtacgttagaaggtgctaaggatatgCATGTTTAAAAA------------CGATAAATGGATCCCCTGAAAGCCGATGGCACTGGGCAGCTTGCCAGTTTCG-TCTCG-GCCGTG-C-TGGGCTCTGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123867548 479 + 133663169 AACTAGAATCATTCTTACCAATATCATTGGCTATTTTCATTGAACA-GCTT-GACGTATTTCAATAAATAAACATCGAAATTATCACTCACAGCAG-----------------------ATGACTGAcctg--------ttgctggacatggaggctatttcttt-------------c--tttt-------tctgctgtgatgaagaa--gctgctgtgaatattct-gtatatacaaatcGCTCACGGTGGAATTGCCAGCttcctttactcagcatatgttgactgggt---tactgggtgtaagcactgctgtaaggtggggtggaacccatcagtgaaca-----agaca----aa--aaa-tcctttccccgtgccgctggccgccttatgggataacga-------aaag----------a---aaaaccagaaaccggttagttacatgtagtacgttagaaggtgctaagGATACACATGTTTAAAAA------------TGATAAACTGATCCCCTGAAAGCCGATGGCACTGGGCAGCTTGTCAGTTTGG-TCTCT-GCTGTACC-TGGGCTCTGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128175745 479 + 137757926 AACTAGAATCATTCTTACCAATATCATTGGCTATTTTCATTGAACA-GCTT-GACGTATTTCAATAAATAAACATCGAAATTATCACTCACAGCAG-----------------------ATGACTGAcctg--------ttgctggacatggaggctatttcttt-------------c--tttt-------tctgctgtgatgaagaa--gctgctgtgaatattct-gtatatacaaatcGCTCACGGTGGAATTGCCAGCttccttgactcagcatatgttgactgggt---tactgggtgtaagcactgctgtaaggtggggtggaacccatcagtgaaca-----agaca----aa--aaa-tcctttccccgtgccgctggccgccttatgggataacga-------aaag----------a---aaaaccagaaaccggttagttacatgtagtacgttagaaggtgctaagGATACACATGTTTAAAAA------------TGATAAACTGATCCCCTGAAAGCCGATGGCACTGGGCAGCTTGTCAGTTTGG-TCTCT-GCTGTACC-TGGGCTCTGG i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12202652 479 + 20526591 AACTAGAATCATTCTTACCAATATCATTGGCTATTTTCATTGAACA-GCTT-GACGTATTTCAATAAATAAATATCGAAATTATCACTCACAGCAG-----------------------ATGACTGACCTG--------TTGCTGGACTTGGAGGCTATTTCTTT-------------C--TTTT-------TCTGCTGTGATGAAGAA--GCGGCTGTGAATATTCT-GTATATACAAATCGCTCACGGTGGAATTGCCAGCttcctttactcagcatatgtgaactgggt---tactgggtgtaagcactgctgtaaggtggggtggaacccatcagtgaaca-----agaca----aa--aaa-tcctttccccgtgccgctggccgccttatgggataacga-------aaag----------a---aaaaccagaaaccggttagttacatgtagtacgttagaaggtgctaagGATACGCATGTTTAAAAA------------TGATAAACTGATCCCCTGAAAGCCGATGGCACTGGGCAGCTTGTCAGTTTGG-TCTCT-GCTGTACC-TGGGCTCTGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119175564 475 + 128539186 AACTAGAATCATTCTTACCAATATCATTGGCTATTTTCATTGAACA-GCTT-GACGTATTTCAATAAATAAACATCGAAATTATCACTCACAGCAG-----------------------ATGACTGAcctg--------ttgctggacatggaggcta----ttt-------------c--tttt-------tctgctgtgatgaagaa--gctgctgtgaatattct-gtatatacaaatTGCTCACGGTGGAATTGCCAACttcctttactcagcatatgttgactgggt---tactgggtgtaagcactgctgtaaggtggggtggaacccatcagtgaaca-----aaaca----aa--aaa-tcctttccccgtgccgctggccgccttatgggataatga-------aaag----------a---aaaaccagaaaccggttagttacatgtagtacgttagaaggtgctgagGATACGCATGTTTAAAAA------------TGATAAACTGATCCCCTGAAAGCCGATGGCACTGGGCAGCTTGTCAGTTTGG-TCTCT-GCTGTGCC-TGGGCTCTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 488425 479 + 6255621 AACTAGAATCATTCTTACCAATATCATTGACTATTTTCATTGAACA-GCTT-GACGTATTTCAATAAATAAACATCGAAATTATCACTCACAGCAG-----------------------ATGACTGACCTG--------TTGCTGGACTTGGAGGCTATTTCTTT-------------C--TTTT-------TCTGCCGTGATGAAGAA--GCTGCTGTGAATATTCT-GTATATACAAATCGCTCACGGTGGAATTGCCAGCttcctttactcagcatatattgactgggt---tactgggtgtaagcactgctgtaaggtggggtggaacccatcagtgaaca-----agaca----aa--aaa-tcctttccccgtgccgctggccgccttatgggataacga-------aaag----------a---aaaatcagaaaccggttagttacatgtagtacgttagaaggtgctaaggatacgcatgtataaaaa------------tgaTAAACTGATCCCCTGAAAGCCGATGGCACTGGGCAGCTTGTCAGTTTGG-TCTCT-GCTGTACC-TGGGCTCTGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4552246 479 - 8658521 AACTAGAATCATTCTTACCAATATCATTGGCTATTTTCATTGGACA-ACTT-GACATATTTCAATAAATAAACATCGAAATTATCACTCACAGCAG-----------------------ATGACTGAcctg--------ttgctggacattgaggctatttcttt-------------c--tttt-------tctgctgtggtgaagaa--gctgctgtgaatattct-gtatatacaaatTGCTCACGGTGGAATTGCCAGCttcctttactcagcaaatgttgattgggt---tactgggtgtaagcactgctgtagggtggggtggaacccatcagtgaaca-----aaaca----aa--aaa-tcctttccccatgcagctggccgccttatgggataacga-------aaag----------a---aaaaccagaaaccagttagttacatgtagtacgtcagaaggtgctgagGATACGCATGTTTAAAAA------------TGATAAACTGATCCCCTGAAAGCCGATGGCACTGGGCAGCTTGTCAGTTTGG-TCTCT-GCTGTGCC-TGGGCTCTGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114756393 452 + 124281992 AAATGGAATCAATCTTGTCAATATCATTGGCTATTTTCATTGAACA-GTTT-GACCTGTTTTAATAAATAAACATTGAAATTATCACTCACAGCAG-----------------------ACGattgacctg--------ttgttggacattgaagctatttcctt-------------c--tttt------ttctgctatgataaagaa-tgctgctgtg-at-tcct-gtatatacaaattGCTCACAGTGGAATTGCCAGCtttgtttactcagcagatgttgattggacacctactgtgtgctagca-tgctgtagggtgcagtggcacccatcggtg---------agaaaacaaaa--aaaatcctttccttgtgcagctggctttcttataggatgatga-------------------------aaaatcagaaagcagttaa-----tgtggtacgttagaaggtggtaaggatatgCGTATTTAAAAA------------TGATAAATGGATCCCTTGAAAGCTGATGGCACCAGGCAGCTTGTCAGTT------TCT-GCT---------------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 400593 487 - 9212255 AAATGGAATCAATCTTACCAATATCATTGGCTATTTTCAATTAACA-GTTT-GACCTGTTTTAATAAATAAACATCGAAATTATCACTCACAGCAG-----------------------ACGATTGAcctg--------ttgttggacattgaagctatttcctt-------------c--tttt------ttctgctatgataaagaa-tgctgctgtg-at-ttct-gtatatacaaattgctcacaGTGGAATTGTCAGCtttgtttacgcaacagatgttgattggacacttactatgtgctagcactgctgtagggtagggtggcacccatcagtgcgcaaaaccaaaaaaaaaaa--aaaaacatttccttgtgcagctggctttcttatgggatgatga-------------------------aaaatcagaaaccagttgatcacctgtggtacgttagaaggtggtaaggatatgcatgtctaaaaa------------tgataaatcagTCCCTTGAAAGCTGATGGCACCGGGCAGCTTGTCAGTTTTG-TCTTT-GCTGTGCC-TGGGCTTGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2814526 482 + 4466143 AAATGGAATCAATCTTACCAATATCATTGGCTATTTTCATTGAACA-GTTT-GACCTATTTTAATAAATAAACATTGAAATTATCACTCACAGCAG-----------------------ACGATTGACCTG--------TTGTTGGACATTGAAGCTATTTCCTT-------------C--TTTT------TTCTGCTGTGTTGAAGAA-TGCTGCTGTG-AT-TTCT-GTATATACAAATTGCTCACAGTGGAATTGCCAGCtttgtttattcagcaaatgttgattggacacctactgtgtgctagcactgctgtagggtggggtggcacccatcagtgagca-----aaacaaaacaa--aaaatcctttccttgtgcagctggctttcttatgggatgatga-------------------------aaaatcagaaaccagttaattacatgtagtacattagaagagggtaaggatatgCATGTTTAAAAA------------TGATAAATTGATCCCTTGAAAGCTGATGGCACCGGGCCGCTTGTCAGTTTCG-TCTCT-GCTGTGCC-TGGGCTTGGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1510194 482 + 5364348 AAATGGAATCAATCTTACCAATATCATTGGCTATTTTCATTGAACA-GTTT-GACCTATTTTAGTAAATACACATTGAAATTATCACTCACAGCAG-----------------------ACGATTGAcctg--------ttgttggacattgaagctatttcctt-------------c--tttt------ctctgctatgataaagaa-tgctgctgtgcatgttct-gtatatacaaattgctcacaGTGGAATTGCCAGCttcgtttactcagcaagggttgattggacacctactgtgtgctagcactgctgtggggtggggtggcacccatcagtgagca-----aaaca--aaaa--aaaatcctttccttgtgcagctggctttcttatgggatgatga-------------------------aaaatcagaaaccagttaattacgtgtggtacgttagaaggtggtaaggatatgCATATTTAAAAA------------TGATAAATCGATCCCTTGGAAACTGATGGCACCGGGCAGCTTGTCAGTTTGG-TCTCT-GCTGTGCC-TGGGCTTGGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4245073 500 + 7922563 aaataggatcatccttaccaatatgattgacttttttcatttaacattTTT-GACCTATTTCAATAAAT--------AAGTTACCACTTACAGTGG-----------------------CTGGtttacctgttctc-tattgttggacatttaggttctttattt-------------ctgtttt-------tttgccatgatagtggg-tgctgctgtgactattcc-atgtatacagatTGCTCA-GTTGGGATTGCTGGCttcattcattcagcaaatgttgactgagc---acctgtgtgtaagcactgttgtggg---tggtaagatgcacctttgagca-----aagca----gatgaaactctctaccctgtgctgctggcttc--tagaggaaagagatggggggaggg----------g---gaatcaagaaataagttaattatatgtcatatgttagagggtgctaTGGATATGCTTGTTTAAAAATTTGGTGGCTTTTGCCAGATTGGTCCCTCAGTAGGTGGTGGCGCTGGGCAGTTTGTTGGTTTTGTTCTCTGGCCATGCC-TGGGCCCTGA i otoGar3.GL873618 I 184 C 0 s canFam3.chr26 33113165 453 - 38964690 aaataaaaaaattattat-----------------------------attt-GAC------------ATAAACATCTAAATTATCACTTTCAGCCA-----------------------ACGACTGACCCAGTTTC---CTATTGGATGTTTGGGGTATTTCCCTTCCCATCACCTGCC--TCCT-------TGTGCCCCTGTAAAGAG-GGCTGGAGTGAATATTCCAGGACATGCAGGTGGCCCTAAGTGGTGTTGTAGGCttcattca-tccctgaatgttgacggagggccttctatgtgcagacactgttgttggccc--atagggcacaccagtgagca-----agagagattat--aaa-tccctgcctcagacagctgaccttctagtgggaggatgg-------aaaa----------aattaacaccagagatgagtaaatgatctaaagttctctagcaggtgataggGACCTTTA----------------------TGCCGCATTGGCCCTCCAAAAGCTG-TGGTTCAGGG--GCTTGTTGGTTGT--TTTCT-GTTGTGCTGGGGGCTCTGG i canFam3.chr26 I 7 C 0 s dasNov3.JH568189 786558 542 - 1116856 aaataggatcatgcttaccaatataactggcttttttcatgtaaca-tcttcgacacatttcaataagcaaacattgcagttaacactgacagcagctacttagtgttccattatgtgaattatttacctaattccctatggttgggggtttcagttatttcatt-------------t--tttccttcttttttgctattgtaaatatgtgctgtgttgagcattctGGCATCTACACATTGCTTAAAGTGGAATTGCTGGGCtcattcattcaaca-gtcttgactgagagtgtcctatgtgcaggcactgatgtaggt--acttggggcacatcactgaaca-----aagca-gataa--aaa-tctctgccccatgcagctgcctttct---aggacagagg-------aaggggggcggaata---aacatcaga-ataagcagattatgcattgtacgttagaaggtACTGAAGATATACTTACTGAAAAATGTGACAGATTTTGCCAAATTGCCCTCCCTACAGGCGATGGTAGT-TGTGGCTTGTTAGTTTTGTTCTCT-GCTGAGCC-TTGGCCCTGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e mm10.chr5 124773161 130 + 151834684 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=656836.000000 s hg38.chr12_KI270834v1_alt 11864 79 + 119498 TGAGTGCCTGT---T-CTGGGCTCAAGAACAGTGTCTCCGCTCTCCC-----TGCTCACCCT-GCTTGACGGCTGTCCTCT-GTTCTGGT s panTro5.chr12 127297997 79 + 137163284 TGAGTGCCTGT---T-CTGGGCTCAAGAACAGTGTCTCCGCTCTCCC-----TGCTCACCCT-GCTTGACGGCTCTCCTCT-GTTCTGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125648971 79 + 135337776 TGAGTGCCTGT---T-CTGGGCTCAAGAACAGTGTCTCCGCTCTCCC-----TGCTCACCCT-GCTTGACGGCTCTCCTCT-GTTCTGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8161915 79 - 8369578 TGAGTGCCTGT---T-CCGGGCTCAAGAACAGTGTCTCTGCTCTCCC-----TGCTCACCCT-GCTTGACGGCTCTCCTCT-GTCCTGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97810012 80 + 106955855 TGAGTGCCTGT---TCCCGGGCTCAAGAACAGTGTCTCCGCTCTCCG-----TGCTCACCCT-GCTTGACGGCTCTCCTCT-GTCCTGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123868027 77 + 133663169 CGAGTGCCTAT---T--GGGGGTCAAACACAGTGTGTCTGCTCTCCC-----TGCTCACCCT-GCTTGAT-GCTCTCCTCT-GTCCTGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128176224 77 + 137757926 CGAGTGCCTAT---T--GGGGGTCAAACACAGTGTGTCTGCTCTCCC-----TGCTCACCCT-GCTTGAT-GCTCTCCTCT-GTCCTGGT i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12203131 77 + 20526591 CGAGTGCCTGT---T--GGGGGTCAAACACAGTGTGTCTGCTCTCCC-----TGCTCACCCT-GCTTGAT-GCTCTCCTCT-GTCCTGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119176039 78 + 128539186 CGAGTGACTGT---T--GCGGGTCAAACACAGTGTGTCTGCTCTCCC-----TGCTCACCCT-GCTTGATGGCTCTCCTCT-GTCCCGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 488904 78 + 6255621 CGAGTGCCTGT---T--GGGGGTCAAACACAGTGTGTCTGCTCTCCC-----TGCTCACCCT-GCTTGATGGCTCTCCTCT-GTCCTGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4552725 78 - 8658521 TGCGTGCCTGT---T--GGGGGTCAAAAACAGTGTGTCTGCTCCCCC-----TGCTCACCCT-GCTTGATGGCTCTCCTCT-GTCCTGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114756845 76 + 124281992 ---GTGCCTGT---T-CCAGGGTCAAGAACAGTGTCTCTGCTCTCCC-----TGCTCACCCT-GCTTGACGGCTCTCCTCT-GTCCTGGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 401080 79 - 9212255 TGAGTGCCTGT---T-CCAGGATCGAGAACAGTGTCTCCCCTCTCCC-----TGCTCACCCT-GCTTAATGGCTGTCCTCT-GTCCTGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2815008 79 + 4466143 TGAGTGCCTGT---T-CCAGGGTCAAGAACAGTGTCTCCGCTCTCCC-----TGCCCACCCT-GCTTGACGGCTCTCCTCT-GTCCTGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1510676 79 + 5364348 TGAGTTCCTGT---T-CCAGGGTCAAGAACAGTGTCTCTGCTCTCCC-----TGCTCACCCT-GCTTGATGGCTCTCCTCT-GTCCTGGT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4245573 69 + 7922563 -GAATGCCCAT---T-CCAGGGGTGAGAACAATGTCTCTGCTTC--------------CCTC-AAGTGACAGCACTTTTCT-GTCCCTGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124773291 71 + 151834684 tgtgtgtctgtgtgt-tcgtgtTTGCACACAGCATTTCTGC---------------CACCTT-GAGTGAC-ACTCCACTGT-CTCCCTGA i mm10.chr5 I 130 I 6 s canFam3.chr26 33113618 85 - 38964690 CCACTGCTTAC---C-CCAGGGGCCAGAGCAGTTGCCCACCCCACCCCCACTTCCCCAGCCTGGCCTGACAGCTCCCCTCT-CACCCTCC i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 787100 67 - 1116856 CACGCGCTGGC---T-CTGGGCACAGGAACAG-------GCTT---C-----TGCTCGCTTT-GCCTGAC---ACTTCTCTGGTCCTTGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e proCoq1.NW_012154285v1 6678353 942 - 9870158 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=19000.000000 s hg38.chr12_KI270834v1_alt 11943 1 + 119498 C s panTro5.chr12 127298076 1 + 137163284 C i panTro5.chr12 C 0 C 0 s panPan2.chr12 125649050 1 + 135337776 C i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8161994 1 - 8369578 C i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97810092 1 + 106955855 C i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123868104 1 + 133663169 C i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128176301 1 + 137757926 C i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12203208 1 + 20526591 C i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119176117 1 + 128539186 C i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 488982 1 + 6255621 C i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4552803 1 - 8658521 C i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114756921 1 + 124281992 C i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 401159 1 - 9212255 C i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2815087 1 + 4466143 C i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1510755 1 + 5364348 C i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6679295 1 - 9870158 C i proCoq1.NW_012154285v1 I 942 C 0 s otoGar3.GL873618 4245642 1 + 7922563 C i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124773368 1 + 151834684 C i mm10.chr5 I 6 C 0 s canFam3.chr26 33113704 1 - 38964690 C i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 787167 1 - 1116856 C i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9424146 2089 - 31815103 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=4097349.000000 s hg38.chr12_KI270834v1_alt 11944 239 + 119498 CAGATCATGGGTGAGACCTTAAAAGACCCCGTGATCAAGAGGTGCTGTGAAGCCCCAAACCGCCTCAGTGACCTACAGAACGTCAGCGAGGGCCTGGAGAAATGCCAGAAAAGCCTCAACGACTACTTAGATTCGAAGAGAAATGCTTTCCCAAGGTTCTTCTTCATTTCTGACGATGAGTTGCTTAGCATTCTGGGGAGCAGCGACCCACTCTGCGTCCAGGAGCACATGATCAAGGT s panTro5.chr12 127298077 239 + 137163284 CAGATCATGGGTGAGACCTTAAAAGACCCCGTGATCAAGAGGTGCTGTGAAGCCCCAAACCGCCTCAGTGACCTACAGAACGTCAGCGAGGGCCTGGAGAAATGCCAGAAAAGCCTCAACGACTACTTAGATTCGAAGAGAAATGCTTTCCCAAGGTTCTTCTTCATTTCTGATGATGAGTTGCTTAGCATTCTGGGGAGCAGCGACCCACTCTGCGTCCAGGAGCACATGATCAAGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125649051 239 + 135337776 CAGATCATGGGTGAGACCTTAAAAGACCCCGTGATCAAGAGGTGCTGTGAAGCCCCAAACCGCCTCAGTGACCTACAGAACGTCAGCGAGGGCCTGGAGAAATGCCAGAAAAGCCTCAACGACTACTTAGATTCGAAGAGAAATGCTTTCCCAAGGTTCTTCTTCATTTCTGATGATGAGTTGCTTAGCATTCTGGGGAGCAGCGACCCACTCTGTGTCCAGGAGCACATGATCAAGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8161995 239 - 8369578 CAGATCATGGGTGAGACCTCAAAAGACCCCGTGATCAAGAGGTGCTGTGAAGCCCCAAACCGCCTCAGTGACCTACAGAACGTCAGCGAGGGCCTGGAGAAATGCCAGAAAAGCCTCAACGACTACTTAGATTCGAAGAGAAATGCTTTCCCGAGGTTCTTCTTCATTTCTGACGATGAGTTGCTTAGCATTCTGGGGAGCAGCGACCCACTGTGCGTCCAGGAGCACATGATCAAGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97810093 239 + 106955855 CAGATCATGGGTGAGACCTTAAAAGACCCCGTGATCAAGAGGTGCTGTGAAGCCCCAAACCGCCTCAGTGACCTACAGAACGTGAGCGAGGGCCTGGAGAAATGCCAGAAAAGCCTCAACGACTACTTAGATTCGAAGAGAAATGCTTTCCCGAGGTTCTTCTTCATTTCTGACGACGAGTTGCTCAGCATTCTGGGGAGCAGCGACCCACTCTGCGTCCAGGAGCACATGATCAAGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123868105 239 + 133663169 CAGATCATGGGCGAGACCTTAAAAGACCCCGTGATCAAGAGGTGCTGTGAAGCCCCAAACCGCCTCAGTGACCTACAGAATGTCAGCGAGGGCCTGGAGAAATGTCAGAAAAGCCTCAACGACTACTTAGATTCAAAGAGAAACGCCTTCCCGAGGTTCTTCTTCATTTCTGACGATGAGCTGCTCAGCATTCTGGGGAGCAGTGACCCACTCTGCGTCCAGGAGCACATGATCAAGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128176302 239 + 137757926 CAGATCATGGGCGAGACCTTAAAAGACCCCGTGATCAAGAGGTGCTGTGAAGCCCCAAACCGCCTCAGTGACCTACAGAATGTCAGCGAGGGCCTGGAGAAATGTCAGAAAAGCCTCAACGACTACTTAGATTCAAAGAGAAACGCCTTCCCGAGGTTCTTCTTCATTTCTGACGATGAGCTGCTCAGCATTCTGGGGAGCAGTGACCCACTCTGCGTCCAGGAGCACATGATCAAGGT i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12203209 239 + 20526591 CAGATCATGGGCGAGACCTTAAAAGACCCCGTGATCAAGAGGTGCTGTGAAGCCCCAAACCGCCTCAGTGACCTACAGAATGTCAGTGAGGGCCTGGAGAAATGCCAGAAAAGCCTCAACGACTACTTAGATTCGAAGAGAAACGCCTTCCCGAGGTTCTTCTTCATTTCTGACGATGAGCTGCTCAGCATTCTGGGGAGCAGTGACCCACTCTGCGTCCAGGAGCACATGATCAAGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119176118 239 + 128539186 CAGATCATGGGCGAGACCTTAAAAGACCCCGTGATCAAGAGGTGCTGTGAAGCCCCAAACCGCCTCAGTGACCTACAGAATGTCAGCGAGGGCCTGGAGAAATGCCAGAAAAGCCTCAACGACTACTTAGATTCGAAGAGAAACGCCTTCCCGAGGTTCTTCTTCATTTCTGACGATGAGCTGCTCAGCATTCTGGGGAGCAGTGACCCACTCTGTGTCCAGGAGCACATGATCAAGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 488983 239 + 6255621 CAGATCATGGGCGAGACCTTAAAAGACCCCGTGATCAAGAGGTGCTGTGAAGCCCCAAACCGCCTCAGTGACCTACAGAATGTCAGCGAGGGCCTGGAGAAATGCCAGAAAAGTCTCAACGACTACTTAGATTCGAAGAGAAACGCCTTCCCGAGGTTCTTCTTCATTTCTGACGATGAGCTGCTCAGCATTCTGGGGAGCAGTGACCCACTCTGCGTCCAGGAGCACATGATCAAGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4552804 239 - 8658521 CAGATCATGGGTGAGACCTTAAAAGACCCCGTGATCAAGAGGTGCTGTGAAGCCCCAAACCGCCTCAGCGACCTTCAGAATGTCAGCGAGGGCCTGGAGAAATGCCAGAAAAGCCTCAACGACTACTTAGATTCAAAGAGAAATGCTTTCCCGAGGTTCTTCTTCATTTCTGACGATGAGCTGCTCAGCATTCTGGGAAGCAGTGACCCACTCTGTGTCCAGGAGCACATGATCAAGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114756922 239 + 124281992 CAGATCATGGCCGAGACCTTGAAAGATCCCGTGATCAAGAGGTGCTGTGAAGCCCCGAACCGCCTCAGTGACCTACAGAATGTCAGTGAGGGCCTGGAGAAGTGCCAGAAAAGTCTCAACGACTACTTAGATTCGAAGAGGAATGCTTTCCCGAGGTTCTTCTTCATTTCTGACGATGAGCTGCTCAGCATCCTGGGGAGCAGTGACCCACTCTGCGTCCAGGAGCACATGATCAAGGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 401160 239 - 9212255 CAGATCATGGCCGAGACCTTGAAAGATCCCGTGATCAAGAGGTGTTGTGAAGCCCCGAACCGCCTCAGTGACCTGCAGAACGTCAGCGAGGGCCTGGAGAAGTGCCAGAAAAGCCTCAACGACTACTTGGATTCGAAGAGGAATGCTTTTCCGAGGTTCTTCTTCATTTCTGACGACGAGCTGCTCAGCATCCTGGGGAGCAGCGACCCGCTCTGTGTCCAGGAGCATATGATCAAGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2815088 239 + 4466143 CAGATCATGGCCGAGACCTTGAAAGATCCCGTGATCAAGAGGTGCTGTGAAGCCCCGAACCGCCTCAGTGACCTACAGAACATCAGCGAGGGCCTGGAGAAGTGCCAGAAAAGCCTCAACGACTACTTAGATTCGAAGAGGAATGCTTTCCCGAGGTTCTTCTTCATTTCTGACGACGAGCTGCTCAGCATCCTGGGGAGCAGCGACCCGCTCTGCGTCCAGGAGCACATGATCAAGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1510756 239 + 5364348 CAGATCATGGCCGAGACCTTGAAAGATCCCGTGATCAAGAGGTGCTGTGAAGCCCCGAACCGCCTCAGTGACCTGAAGAACGTCAGCGAGGGCCTGGAGAAGTGCCAGAAAAGCCTCAATGACTACTTAGATTCGAAGAGGAATGCTTTCCCAAGGTTCTTCTTCATTTCTGACGACGAGCTGCTCAGCATCCTGGGGACCAGCGACCCGCTCTGCGTCCAGGAGCACATGATCAAGGT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9426235 239 - 31815103 CAGATCATGGGCGAGACTCTGAAGGACCCCGTGATCAAGCGCTGCTGCGAGGCCCCGAACCGCCTGCACGACCTGCAGAACATCGGCGAGGGCCTGGAGAAGTGCCAGAAGAGCCTGAACGACTACCTGGACTCGAAGAGGAACGCTTTCCCGAGGTTCTTCTTCATCTCCGACGACGAGCTGCTCAGCATCTTGGGCAGCAGCGACCCGCTGTGCGTGCAGGAGCACATGATAAAGGT i micMur3.chr21 I 2089 I 741 s proCoq1.NW_012154285v1 6679296 239 - 9870158 CAGATCATGGGCGAGACCTTGAAGGACCCCGTGATCAAGCGCTGCTGCGAGGCCCCGAACCGCCTCCACGACCTGCAGAACATCGGCGAGGGCCTGGAGAGGTGCCAGAAGAGCTTGAACGACTACTTGGACTCCAAGAGAAACGCCTTCCCGAGGTTCTTCTTCATCTCCGACGACGAGCTGCTCAGCATCCTGGGCAGCAGCGACCCGCTGTGCGTGCAGGAGCACATGATAAAGGT i proCoq1.NW_012154285v1 C 0 I 134 s otoGar3.GL873618 4245643 239 + 7922563 TAGATCATGGGTGAGACCTTGAAAGACCCTGTGATCAAGCGATGTTGTGAAGCCCCAAACCGCCTCAATGACCTGCAGCAGATCAGTGAGGGCCTGGAGAAGTGCCAGAAGAGCTTAAATGACTACTTAGACTCCAAGAGAAACGCGTTCCCCAGGTTCTTCTTCATTTCTGATGATGAGCTGCTCAGCATCTTGGGAAGCAGCGACCCGCTCTGTGTCCAGGAGCACATGATAAAGGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124773369 239 + 151834684 CAGATCATGGGGGAGACATTGAAAGACCCAGTGATAAAGCGCTGCTGTGAGGCCCCAAACCGCCTCCACGACCTGCAGACCATCAGCGAGGGCCTGGAGAAGTGCCAGAAGAGCCTGAACGACTACCTGGACTCCAAGAGGAATGCCTTCCCCAGGTTCTTCTTCATCTCGGACGACGAGCTGCTCAGCATCTTGGGCAACAGTGACCCACTGTGCGTGCAAGAGCATATGATCAAGGT i mm10.chr5 C 0 I 2 s canFam3.chr26 33113705 239 - 38964690 CAGATCATGGGCGAGACCTTAAAGGACCCCGTGATCAAGAGATGCTGCGAGGCCCCGAACCGCCTGGCCGACTTGCAGCACATCAGTGAGGGCCTCGAGAAATGCCAGAAGAGCTTGAACGACTACTTAGATAGCAAGAGAAACGCTTTCCCGAGGTTCTTCTTCATTTCTGACGATGAGCTGCTCAGCATCCTGGGGAATAGCGACCCACTGTGCGTCCAGGAACACATGATCAAGGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 787168 239 - 1116856 CAGATAATGGGAGAAACTTTAAAAGACCCGGTGATCAAGAGATGCTGCGAAGCCCCAAACCGCCTCAACGACTTACAGAATATCAGCGAAGGCCTCGAGAAATGCCAGAAGAGTTTAAATGACTACTTAGACTCCAAGAGAAACTCCTTCCCGAGGTTTTTCTTCATTTCTGACGACGAGCTGCTCAGCATTCTGGGCAACAGCGACCCCCTCTGTGTTCAGGAGCACATGATAAAGGT i dasNov3.JH568189 C 0 C 0 e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=108149.000000 s hg38.chr12_KI270834v1_alt 12183 14 + 119498 CAGCCCTCTGGGTG s panTro5.chr12 127298316 14 + 137163284 CAGCCCTCTGGGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125649290 14 + 135337776 CAGCCCTCTGGGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8162234 14 - 8369578 CAGCCCTCTGGGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97810332 14 + 106955855 CAGCCCTCTGGGTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123868344 14 + 133663169 CGGCCTTCTGGGTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128176541 14 + 137757926 CGGCCTTCTGGGTG i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12203448 14 + 20526591 CGGCCCTCTGGGTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119176357 14 + 128539186 CGGCCCTCTGGGTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 489222 14 + 6255621 CGGCCCTCTGAGTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4553043 14 - 8658521 CGGCCCTCTGGGTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114757161 14 + 124281992 CAGCCCTCTGGGTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 401399 14 - 9212255 CAGCCCTCTGGGCG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2815327 14 + 4466143 CGGCCCTCTGGGTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1510995 14 + 5364348 CGGCCCTCTGGGTG i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124773610 12 + 151834684 GGGCCCACGGTG-- i mm10.chr5 I 2 I 111 s canFam3.chr26 33113944 3 - 38964690 ---------AGG-- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 787407 6 - 1116856 GAGCCG-------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e proCoq1.NW_012154285v1 6679535 134 - 9870158 I e otoGar3.GL873618 4245882 0 + 7922563 C e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=359858.000000 s hg38.chr12_KI270834v1_alt 12197 47 + 119498 T-GCAGGGGCTCCCCGTGTAAGCCTTAGAACCGCCTTCGGTCCTCCCT s panTro5.chr12 127298330 47 + 137163284 T-GCAGGGGCTCCCCGTGTGAGCCTTGGAACCGCCTTCGGTCCTCCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125649304 47 + 135337776 T-GCAGGGGCTCCCCGTGTAAGCCTTAGAACCGCCTTCAGTCCTCCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8162248 46 - 8369578 T-GCA-GGGCTCCCCGTGTAAGCCTTAGAACTGCCTTCGGTCCTCCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97810346 47 + 106955855 T-GCAGGGGCTCCCCGTGTAAGCCTTAGAACCGCCTTCGGTCCTCCCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123868358 47 + 133663169 G-GCAGGGGCTCCCCGTGTAAGCCTTAGAACTGCCTTTGGTCCTCCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128176555 47 + 137757926 G-GCAGGGGCTCCCCGTGTAAGCCTTAGAACTGCCTTTGGTCCTCCCT i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12203462 47 + 20526591 G-GCAGGGGCTCCCCGTGTAAGCCTTAGAACCGCCTTCGGTCCTCCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119176371 47 + 128539186 G-CCAGGGGCTCCCCGTGTAAGCCTTAGAACCGCCTTCGGTCCTCCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 489236 47 + 6255621 G-GCAGGGGCTCCCCGTGTAAGCCTTAGAACCGCCTTCAGTCCTCCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4553057 47 - 8658521 G-GCAGGGGCTCCCCGTGTAAGCCTTAGAACCGCCTTCGGTCCTCCCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114757175 47 + 124281992 T-GCAGGGGCTCCCTGTGTAAGCCTTAGAACCACCTTTGGTCCTTCCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 401413 48 - 9212255 CAGAGGGGGCTCCCTGTGTGAGCCTCAGCACCGCCTTTGGTCCTCCCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2815341 47 + 4466143 C-GCAGGGGCTCCCTGTGTGAGCCTTAGAACCGCCTTCTGTCCTCCCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1511009 47 + 5364348 C-GCAGGGGCTCCCTATGTAAGCCTTAGAACCGCCTTCGGTCCTCCCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4245882 10 + 7922563 -------------------------------------CAGCCTCCCC- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33113947 17 - 38964690 -------------------------------CGCCTCCTGTcccgccc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 787413 14 - 1116856 ----------------------------------CGCGGGTCTTCCCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6679535 134 - 9870158 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=277134.000000 s hg38.chr12_KI270834v1_alt 12244 35 + 119498 GGTTCCCTTTGCCATGAGGTTCAACCCAGAGGGTT s panTro5.chr12 127298377 35 + 137163284 GGTTCCCTTTGCCATGAGGTTCAACCCAGAGGGTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125649351 35 + 135337776 GGTTCCCTTTGCCATGAGGTTCAACCCAGAGGGTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8162294 35 - 8369578 GGTTCCCTTTGCCATGAGGTTCAACGCAGAGGGTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97810393 35 + 106955855 GGTTCCCTTTGCCATGAGGTTCAACCCAGAGGGTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123868405 35 + 133663169 GGTTCCCTTTGCCGTGAGGTTCAACCCAAAGGGTT i rheMac8.chr11 C 0 I 63628 s macFas5.chr11 128176602 35 + 137757926 GGTTCCCTTTGCCGTGAGGTTCAACCCAAAGGGTT i macFas5.chr11 C 0 I 303 s cerAty1.NW_012001186v1 12203509 35 + 20526591 GGTTCCCTTTGCCGTGAGGTTCAACCCAAAGGGTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119176418 35 + 128539186 GGTTCCCTTTGCCGTGAGGTTCAACCCAAAGGGTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 489283 35 + 6255621 GGTTCCCTCTGCCGTGAGGTTCAACCCAAAGGGTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4553104 35 - 8658521 GGTTCCCTTTGCCATGAGGTTCAACCCAAAAGGTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114757222 34 + 124281992 GGTTCCCT-TGCCATGAGGTTCAGCCCGGAGAGTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 401461 34 - 9212255 GGTTCCCT-TGCCATGAGGTCCAGCCCAGAGAGTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2815388 34 + 4466143 GGTTCCCT-TGCCATGAGGTTCAGCCCAGAGAGTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1511056 34 + 5364348 GGTTCCCT-TGCCATGAGGTTCAGCCCAGGGAGTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4245892 8 + 7922563 --------------CGAGGTTC------------- i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 787427 18 - 1116856 ---------------AGGGAGCAGCCC--AGCGTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6679535 134 - 9870158 I e canFam3.chr26 33113964 0 - 38964690 C e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=831365.000000 s hg38.chr12_KI270834v1_alt 12279 106 + 119498 AAGAC--TGAAATGCTGCTGGAGTTGGttttttggtttgttttttgagacagggtctggctctgttgcccaggctggagcgcagtggtacaa-tcatggctcattgcag s panTro5.chr12 127298412 106 + 137163284 AAGAC--TGAAATGCTGCTGGAGTTGGttttttggtttgttttttgagacagggtctggctctgttgcccaggctggagcgcagtggtacaa-tcatggctcattgcag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125649386 106 + 135337776 AAGAC--TGAAATGCTGCTGGAGTTGGttttttggtttgttttttgagacagggtctggctctgttgcccaggctggagcgcagtggtacaa-tcatggctcattgcag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8162329 106 - 8369578 AAGAC--TGAAATGCTGCTGGAGTTGGttttttggtttgttttttgagacagggtctggctctgttgcccaggctggagcgcagtggtacaa-tcatggctcattgcag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97810428 106 + 106955855 AAGAC--TGAAATGCTGCTGGAGTTGGttttttggtttgttttttgagatagggtctggctctgttgcccaggctggagtgcagtggtacaa-tcgtggctcactgcag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123932068 107 + 133663169 aaGAC--TGAAATGTTGCTAGAGTTGGGtttttggtttgttttctgagatagggtctggctctgttgcccaggctggagtgcggtggtgcaattcgtggctcactgcag i rheMac8.chr11 I 63628 C 0 s macFas5.chr11 128176940 107 + 137757926 aaGAC--TGAAATGTTGCTAGAGTTGGGtttttggtttgttttctgagatagggtctggctctgttgcccaggctggagtgcggtggtgcaattcgtggctcactgcag i macFas5.chr11 I 303 C 0 s cerAty1.NW_012001186v1 12203544 107 + 20526591 AAGAC--TGAAATGTTGCTAGAGTTGGGtttttggtttgttttctgaggtagggtctggctctgttgcccagactggagtgcggtggtgcaattcgtggctcactgcag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119176453 107 + 128539186 AAGAC--TGAAATGTTGCTAGAGTTGGGtttttggtttgttttctgagatagggtctggctctgttgcccaggctggagtgcggtggtgcaattcgtggctcactgcag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 489318 107 + 6255621 AAGAC--TGAAATGTTGCTAGAGTTGGGtttttggtttgttttctgagatagggtctggctctgttgcccaggctggagtgcggtggtgcaattcgtggctcactgcag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4553139 107 - 8658521 AAGAC--TGAAATGTTGCTAGAGTTGGGtttttggtttgttttctgagatagggtctggctctgttgcccaggctggagtgcagtggtgcagttcgtggctcactgcag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114757256 105 + 124281992 AAGAC--TGAAATGCTGCTGGAGTTGGTTGTTTGGtttattttttgagatagggtctggctctgttggccaggctggagtgcagggt-gcaa-tcatggctcactgcag i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 401495 104 - 9212255 AAGAC--TGAAATGCTGCTGGAGTTGGTTGGttgttttgttttgtgag--agggtctggctctgttgcccaggctggagtacagtgtggcaa-tcaaggctcactgcag i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2815422 106 + 4466143 AAGAC--TGAAATGCTGCTGGAGTTGGttgtttcgtttgttttttgagatagggtctggctccgttgcccaggctggagtgcagtggtgcaa-tcgtggctcactgcag i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1511090 106 + 5364348 AAGAC--TGAAATGCTGCTGGAGTTGGTTGTTTGGTTTGCtttttgagatagggtctggctctgttgcccaggctggagtgcggtggtgcag-tcatggctcactgcag i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4245900 43 + 7922563 AAGACTGTGAAATGCTACTGGAG----------------------------------GGTTTTATT--------TGAAGCATA-------AA----------------- i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 787445 19 - 1116856 ---------------------------------------------GAGGCTCAGTC-GGCTTCAT-------------------------------------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6679535 134 - 9870158 I e canFam3.chr26 33113964 0 - 38964690 C e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=480855.000000 s hg38.chr12_KI270834v1_alt 12385 65 + 119498 cctccacctccccgactcaagtgatc-tgccacctcagctgcctgagtggctgggaccacag-gtgc s panTro5.chr12 127298518 65 + 137163284 cctccacctccccaactcaagtgatc-tgccacctcagcttcctgagtggctgggaccacag-gtgc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125649492 65 + 135337776 cctccacctccccaactcaagtgatc-tgccacctcagcttcctgagtggctgggaccacag-gtgc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8162435 65 - 8369578 cctccacctccccgactcaagtgatc-tgccacctcagcttcctgagtggctgggaccacag-gtgc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97810534 65 + 106955855 ccttgacctccccgactcaagtgatc-tgctgcctcagcttcctgagtcactgggaccacag-gtgc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123932175 65 + 133663169 cctcgagctccccgactcaagtgatc-tgccacctcagcttcctgagtcgctgggaccacaa-gtgt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128177047 65 + 137757926 cctcgagctccccgactcaagtgatc-tgccacctcagcttcctgagtcgctgggaccacaa-gtgt i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12203651 65 + 20526591 cctcgagctccccgactcaagtgatc-tgccacctcagcttcctgagtcgctgggaccacaa-gtgc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119176560 65 + 128539186 cctcgagctccccgactcaagtgatc-tgccacctcagcttcctgagtcactgggaccacaa-gtgc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 489425 65 + 6255621 cctcgagttccccgacgcaagtgatc-tgccacctcagcttcctgagtcgctgggaccacaa-gtgc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4553246 65 - 8658521 cctcaacctccctgactctagtgatc-tgccacctcagcttcctgagccgctgggaccacaa-gtgc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114757361 66 + 124281992 cctcaacctccctgactccagtgatcctgccacctcagcttccagggtagctgggagcacaa-gtgc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 401599 67 - 9212255 cctcaacttccctgacacaagtgatcctgccacctcagcttccggagtagctgggaacacaaggtgc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2815528 66 + 4466143 cctcaacctccctgactcaagtgatcttgccacctcagcttctggagtagctgggagcacag-gtgc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1511196 66 + 5364348 ccccaacctccctgactcaagtgatcctgccacctcagctcccggagtagctgggagcacaa-gtgc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4245943 25 + 7922563 ----------CCTGA------TGATG-------CTCAGT-----------CTGAGA-------TTG- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33113964 44 - 38964690 ccacccccacccctac-----------ccccaccTCAG-----GGAGCAGCTG------CAG-ATGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 787464 51 - 1116856 CCTGCTTCTCTTCG----TGGTGATG-GTCGACAT----------AGAGGTTTAAGACGGAG-GTGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6679535 134 - 9870158 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=591895.000000 s hg38.chr12_KI270834v1_alt 12450 80 + 119498 acaccaccatgcctggctaatttttatatat-tttttggagagat-gaggtctcactgtgttacctgggctggtctctaact s panTro5.chr12 127298583 80 + 137163284 acaccaccatgcctggctaatttttatttat-tttttggagagat-gaggtctcactgtgttacctgggctggtctctaact i panTro5.chr12 C 0 C 0 s panPan2.chr12 125649557 80 + 135337776 acaccaccatgcctggctaatttttatttat-tttttggagagat-gaggtctcactgtgttacctgggctggtctctaact i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8162500 80 - 8369578 acaccaccatgcctggctaatttttatatat-tttttggagagat-gaggtctcactgtgttacctgggctggtctctaact i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97810599 71 + 106955855 acaccaccatgcctggcta----------at-tttttggagagatgggggtctcactgtgttgcccaggctggtctctaact i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123932240 80 + 133663169 acaccaccatgcctggctattttttatatat-tttttggagagat-ggggtctcattatgttgcccaggctggtccctaact i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128177112 80 + 137757926 acaccaccatgcctggctattttttatatat-tttttggagagat-ggggtctcattatgttgcccaggctggtccctaact i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12203716 80 + 20526591 acaccaccatgcctggctattttttatatat-tttttggagagat-ggggtctcattatgttgcccaggctggtccctaact i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119176625 80 + 128539186 acaccaccatgcctggctattttttatatat-tttttggagagat-ggggtctcattatgttgcccaggctggtccttaact i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 489490 80 + 6255621 acatcaccatgcctggctattttttatatat-tttttggagagat-ggggtctcattatgttgcccaggctggtccctaact i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4553311 80 - 8658521 acaccaccatgcctggctattttttatatat-tttttggagagat-ggggtctcattatgttgcccaggctggtccctaacc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114757427 81 + 124281992 acaccaccatgcccagataatttttgtattttttttttgagagac-cgagtctcactgtgttgcccaggctagtcccttact i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 401666 81 - 9212255 acaccaccatgcccagctaatttatatatatatttttggagagac-ggagtctcactatgttgtccaggctagtctctaact i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2815594 81 + 4466143 acaccaccatgcccagctaatttttatatatttttttggagagac-agagtctcactatgttgcccaggctagtctctaact i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1511262 81 + 5364348 acaccaccatgcccagctaatttttacatatttttttggagagat-ggagtctcaccatgttgcccaggctagtctctaact i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4245968 34 + 7922563 ----CACCAGACTTGGCTCTTTTCTATA--------------------------------------------GTCCCAAACT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33114008 25 - 38964690 --------------------------------------------T-G-----TCACTGTGTCACGTGATCTGTTC------- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6679535 134 - 9870158 I e dasNov3.JH568189 787515 0 - 1116856 C e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=692848.000000 s hg38.chr12_KI270834v1_alt 12530 84 + 119498 cctgagctcaagcaatgctcccacctcggcctcc-caaag---tgggattacaggtgtgagccaccacactcagccCTCGAGTTTTAA s panTro5.chr12 127298663 84 + 137163284 cctgagctcaagcaatgctcccaccttggcctcc-caaag---tgggattacaggtgtgagccaccacactcagccCTCGAGTTTTAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125649637 84 + 135337776 cctgagctcaagcaatgctcccaccttggcctcc-caaag---tgggattacaggtgcgagccaccacactcagccCTCGAGTTTTAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8162580 84 - 8369578 cttgagctcaagcaatgttcccacctcggcctcc-caaag---taggattacaggagtgagccaccacactcagccCTCGAGTTTTAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97810670 87 + 106955855 cctgagctcaagcgatgctcccacctcggcctcc-caaagtgctgggattacagatgtgagccaccacactcagccCTGGAGTTTTAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123932320 87 + 133663169 cctgagctcaagcgatcctcccacctcagcctcc-caaagtgctgggattgcaggtgtgagccaccgcactcagccCTGGAGTTTTAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128177192 87 + 137757926 cctgagctcaagcgatcctcccacctcagcctcc-caaagtgctgggattgcaggtgtgagccaccgcactcagccCTGGAGTTTTAA i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12203796 87 + 20526591 cctgagctcaagcgatcctcccacctcagcttcc-caaagtgctgggattgcaggtgtgagccaccgcactcagccCTGGAGTTTTAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119176705 87 + 128539186 cctgagctcaagcgatcctcccacctcagcctcc-cgaagtgctggagttgcaggtgtgagccaccacactcagccCTGGAGTTTTAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 489570 87 + 6255621 cctgagctcaagcgatcctcccacctcagcctcc-caaagtgctgggattgcaggtgtgagccaccgcactcagccCTGGAGTTTTAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4553391 84 - 8658521 c---agctcaagcgatcctcccacctcagcctcc-caaagtgctgggattgcaggtgtgaaccaccgcactcagccCTGGAGTTTTAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114757508 87 + 124281992 cctgagctcaggcgatcttcccgcctcagcctcc-caaagtgctgggattatgggtgtgagccaccacactcagccCTGGAGTTTTTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 401747 87 - 9212255 cctgaactcaagcgatcttcccacctcagcctcc-caaagtgctgggattatgagtgtgagccaccacactcagtcCTGGAGTTTTTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2815675 87 + 4466143 cctgagctcaagcgatcttcctacctcagcctcc-taaattgctgggattatgggtgtgagccaccacactcagccATGGAGTTTTTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1511343 87 + 5364348 cctgagctcaagcgatctttccacctcagcctcc-caaagtgctgggattatgggtgtgagccaccacgctcagccCTGGAGTTTTTA i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33114033 55 - 38964690 ----------------CATTCCAC----GTCTCTGCGCAG---TTGGCTT----------GGCACCGGGAAATGCTGCTGGGCTTTTA i canFam3.chr26 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6679535 134 - 9870158 I e dasNov3.JH568189 787515 0 - 1116856 C e otoGar3.GL873618 4246002 0 + 7922563 C e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=261617.000000 s hg38.chr12_KI270834v1_alt 12614 30 + 119498 TTTGAAGTGTAAGCCTGATGATATTCACTG s panTro5.chr12 127298747 30 + 137163284 TTTGAAGTGTAAGCCTGATGATATTCACTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125649721 30 + 135337776 TTTGAAGTGTAAGCCTGATGATATTCACTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8162664 30 - 8369578 TTTGAAGCGTAAGCCTGATGATATTCACTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97810757 30 + 106955855 TTTGAAGCGTAAGCCTGATGATATTCACTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123932407 30 + 133663169 TTTGAAATGTAAGTCTGATGATATTCACTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128177279 30 + 137757926 TTTGAAATGTAAGTCTGATGATATTCACTC i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12203883 30 + 20526591 TTTGAAATGTAAGTCTGATGATATTCACTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119176792 30 + 128539186 TTTGAAGCATAAGCCTGATGATATTCACTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 489657 30 + 6255621 TTTGAAATGTAAGTCTGATGATATTCACTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4553475 30 - 8658521 TTTGAAGCGTAAGCCTGACGATATTCACTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114757595 28 + 124281992 TTTGAAGGATAAGCCTGATGATATTCAC-- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 401834 28 - 9212255 TTTGAAGCGTAAGCCTGATGATATTCAC-- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2815762 28 + 4466143 TTTGAAGCATAAGCCTGATGATATTCAC-- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1511430 28 + 5364348 TTTGAAGCATAAGCCTGATTATATTAAC-- i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33114088 30 - 38964690 TCAGAAACTTAAATGTCATGAAATCCACTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 787515 30 - 1116856 TTTGAGGCACAAGCCTGATGAAATGCGCTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6679535 134 - 9870158 I e otoGar3.GL873618 4246002 0 + 7922563 C e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=308238.000000 s hg38.chr12_KI270834v1_alt 12644 27 + 119498 AGTCTGAAATCACAC-C-AGATTCAGCTA s panTro5.chr12 127298777 27 + 137163284 AGTCTGAAATCACAC-C-AGATTCAGCTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125649751 27 + 135337776 AGTCTGAAATCACAC-C-AGATTCAGCTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8162694 27 - 8369578 AGTCTGAAATCACAC-C-AGATTCAGCTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97810787 27 + 106955855 AGTCTGAAATCACGC-C-AGATTCAGCTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123932437 27 + 133663169 AGTCTGAAATCACAC-C-AGATTCAGCTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128177309 27 + 137757926 AGTCTGAAATCACAC-C-AGATTCAGCTC i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12203913 27 + 20526591 AGTCTGAAATCACAC-C-AGATTCAGCTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119176822 27 + 128539186 AGTCTGAAATCACAC-C-AGATTCAGCTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 489687 27 + 6255621 AGTCTGAAATCACAC-C-AGATTCAGCTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4553505 27 - 8658521 AGTCTGAAATCACAC-C-AGATTCAGCCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114757623 27 + 124281992 AGTCTGAAATCACAC-C-AGATTCAGCTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 401862 27 - 9212255 AGTCTGAAATCACAG-C-AGATTTAGCTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2815790 27 + 4466143 AGTCTGAAATAACAG-C-AGATTTAGCTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1511458 27 + 5364348 AGTCTGAAATCACAC-C-AGATTTAGCTC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6679669 27 - 9870158 AGTCTGGAATGACAC-C-AGCCTCAGCTC i proCoq1.NW_012154285v1 I 134 C 0 s canFam3.chr26 33114118 28 - 38964690 AGTCTGAAATCACACAA-AGATTCCACTG i canFam3.chr26 C 0 I 17 s dasNov3.JH568189 787545 28 - 1116856 AGTCTAAAATTACGC-CAAAACTCAGCTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e otoGar3.GL873618 4246002 0 + 7922563 C e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=2214707.000000 s hg38.chr12_KI270834v1_alt 12671 226 + 119498 -------------TTTTTCCACAG-TCCAAAACCTTTCTTTTT----ATAAACTaaaaaaaaaaaaaaaacaaaaaaaCCAGAAATATATGAAGACTAATATATTAAATAGGGAGGcattagaggatagtggtt----tagcacatggactctagaaccagattgctggggttcaaatctttgctctattctgagtttctgtgtgatcttcggcaagttccttgatctctctggacatcagtttcctc s panTro5.chr12 127298804 224 + 137163284 -------------TTTTTCCACAG-TCCAAAACCTTTCTTTTT----ATAAACTAAAAAAACAAAGAA--CAAAAAAACCAGAAATATATGAAGACTAATATATTAAATAGGGAGGcattagaggatagtggtt----tagcacatggactctagaaccagattgctggggttcaaatctttgctctattctgagtttctgtgtgatcttcggcaagttccttgatctctctggacgtcagtttcctc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125649778 222 + 135337776 -------------TTTTTCCACAG-TCCAAAACCTTTCTTTTT----ATAAACTAAAAAACAAAAA----CAAAAAAACCAGAAATATATGAAGACTAATATATTAAATAGGGAGGcattagaggatagtggtt----tagcacatggactctagaaccagattgctggggttcaaatctttgctctattctgagtttctgtgtgatcttcggcaagttccttgatctctctggacatcagtttcctc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8162721 226 - 8369578 -------------TTTTTCCACAG-TCCAAAACCTTTCTTTTT----ATAAACTaaaaaacaaaacaaaacaaaaaaaccagaaATATATGAAGACTAATATATTAAATAGGGAGGcattagaggatagtggtt----tagcacatggactctagaaccagattgctggggttcaaatctttgctctattctgagtttctgtgtgatcttcggcaagttccttgatctctctggacatcagtttcctc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97810814 221 + 106955855 -------------TTTTTCCACAG-TCCAAAACCTTTCTTTTT----ATAAACTaaaaaaaaaaaaa---caaaaaa--cagaaaTATATGAAGACTAATATATTAAAcagagaggcgttagaggatagtggtt----tagcacatggactcaagaaccagattgctggggttcaaatctttgctctattctgagtttctgtgtgaccttcggcaagttacttaatctctgtggacatcagtttcctc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123932464 225 + 133663169 -------------TTTTTCCACAG-TCCAAAACCTTTCCTTTT----ataaactaaaaaaagttaaaaa-taaaaaatacagaaataTACAAAGACTAATATATTAAACAGAGAGGcattagaggatagtggtt----ttgcacatggactctagaaccagatggctggggttcaaatctttgctctattctgagtttctgtgtgaccttcggcaaggtacttgatctctctggacatcagtttcctc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128177336 225 + 137757926 -------------TTTTTCCACAG-TCCAAAACCTTTCCTTTT----ataaactaaaaaaagttaaaaa-taaaaaatacagaaataTACAAAGACTAATATATTAAACAGAGAGGcattagaggatagtggtt----ttgcacatggactctagaaccagatggctggggttcaaatctttgctctattctgagtttctgtgtgaccttcggcaaggtacttgatctctctggacatcagtttcctc i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12203940 225 + 20526591 -------------TTTTTGCACAG-TCCAAAACCTTTCCTTTT----ataaactaaaaaaagttaaaaa-taaaaaatacagaaataTACAAAGACTAGTATATTAAACAGAGAGGCATTGGaggatagtggtt----tcgcacatggactgtagaaccagatggctggggttcaaatctttgctctattctgagtttctgtgtggccttcggcaaggtacttgatctctctggacatcagtttcctc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119176849 225 + 128539186 -------------TTTTTCCACAG-TCCAAAACCTTTCCTTTT----ataaactaaaaaaaattaaaaa-taaaaaatacagaaataTACGAAGACTAATATATTAAACAGAGAGGcattagaggatagtggtt----tcgcacatggactctagaaccagatggctggggttcaaatctttgctctattctgagtttctgtgtgaccttcgacaaggtacttgatctctctggacatcagtttcctc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 489714 225 + 6255621 -------------TTTTTCCACAG-TCCAAAACCTTTCCTTTT----ataaactaaaaaaagttaaaaa-taaaaaatacagaaataTACAAAGACTAGTATATTAAACAGAGAGGCATTGGaggatagtggtt----tcgcacatggactctagaaccacatggctggggttcaaatctttgctctattctgagtttctgtgtggccttcggcaaggtacttgatctctctggacatcagtttcctc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4553532 225 - 8658521 -------------TTTTTCCACAG-TCCAAAACCTTTCCTTTt----ataaactaaaaaaaattaaaaa-taaaaaatacagaaataTACGAAGACTAATATATTAAACAGAGAGGCATCAGaggatagtggtt----tcacacatggactctagaaccagatggctggggttcaaatctttgctctattctgagtttctgtgtgaccttcggcaagttactcgatctctctggacatcagtttcctc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114757650 189 + 124281992 -------------TTTTTCCACAG-TCGAAAACt-------------------------------aaaa-aaaaaaaaaaagaaatataaaaaGGCTAGTATATTAAACAGAGAagcattaga-------ggtt----tagcatgtggactctagaaccagattgct-gggtccaaatctttgctctatgctgagtttctgtgtgaccttcggcaagttactt-atctctttggacatcggtttcctc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 401889 200 - 9212255 -------------TTTTTCCACAG-TCCAAAAAT-----------------------------AGAAAA-AAAAAAAAAAAGAAATATACAAAGACTAATATATTAAACAGAGAAGcattagaggatagtggtt----tagcacgtggactctagaaccagattgctggggtccaaatctttgctctatgctgagtttctgtgtgaccttcggcaagttacttgatctctctggacatcagtttcctt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2815817 193 + 4466143 -------------TTTTTCCACAG-TCCAAAACT-------------------------------------AAAAAAAAAAGAAATATACAAAGACTAATATATTAAAcagaggagcattagaggatagtggtt----tagcacgtggactctagagccagattgctggggtccaaatctttgctctgtgctgagtttctgtgtgaccttcggcaacttacttgatttctctggacatcggtttcctc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1511485 193 + 5364348 -------------TTTTTTCACAG-TCCAAAACT-------------------------------------AAAACAATAAGAAATATACAAAGACTAATCTATTAAAcagagaagcattagaggatagtggtt----tagcacgtggactctagaaccagattgctggggtccaaatctttgttctatgctgagtttctgtgtgaccttcagcaagttacctgatctctctggacgttggtttcctc i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6679696 214 - 9870158 -------------TTTCTCCACAG-TCCAAAACCTTCTTTTTTTTTGAGAAACT----------------AAAGAAATACAGAAATACACAAAGGCTAATATAATAAACAGAGAGGcagtagaggatggtcgtt----tagtacagggactccggaaccagattgcctgggttcaaatcctggctctccactgagttgctgtgtgacctttggcaagttacttaacctctctgagcattggtttcctt i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4246002 177 + 7922563 ---------------------------------TTTTTTTCTTTCTGGGAAACT----------------AAAAAAATCCAAAAGTACACAAAAGCTGA------------------agtagaggataccggtt----tagtagagggactctggaaccagatggtgtagcttctaatcctggctctacactgagttgctatgtgacctttggcaagttacttaacctctctgggcattggtctcctc i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33114163 211 - 38964690 -------------TTTTTCTGTAG-TCCAAAAACATTTTTTTT----AGAAACTA---------------AAAAGAAGATAGCAATATACAAAGACTAATATAATAAGCTGGGAGGTGAtatagtatagggctt----cagcatgtggactctggagccagactgcctgggttcaaatctggaccccacacagatttgctatgtgacttttggcaagttacttaacttctctgggcagcagtttttct i canFam3.chr26 I 17 I 449 s dasNov3.JH568189 787573 211 - 1116856 TTATTTATTGCTCTTTTTCCACAGCCCCAAAACATCCTCTTTT---------------------------TGAGAAACAGACAAATACACAAAGACTAACATAATAAACACAGAAacaataagcgatattggtttagctagcacacaggctctagagct---------ggattcaaatcctgactctatgctgatttgctctgtgaacttaggcaagttacttaacctttctgggcatcagttcctc- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=1382813.000000 s hg38.chr12_KI270834v1_alt 12897 118 + 119498 atctgtgaatggacataaccccaatggtt-acctgtttcagtggagctgttgtaaaaatgaaatgagttactatttataaagtactttgaacagtgcctACCTTTCAATGTTGGCTAAA s panTro5.chr12 127299028 118 + 137163284 gtctgtgaatggacataaccccaatggtt-acctgtttcagtggagctgttataaaaatgaaatgagttactatttataaagtactttgaacagtgcctACCTTTCAATGTTGGCTAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125650000 118 + 135337776 gtctgtgaatggacataaccccaatggtt-acctgtttcagtggagctgttataaaaatgaaatgagttactatttataaagtactttgaacagtgcctACCTTTCAATGTTGGCTAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8162947 118 - 8369578 atctgtgaatggacataaccccaatggtt-acctgtttcagtggagctgttataaaaatgaaatgagttactatttataaagtactttgaacagtgcctACCTTTCAATGTTGGCTAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97811035 118 + 106955855 atctgtgaatggtcataaccccaatagtt-acctgtttcagtggagctgttataaagatgaaatgagttactatttataaaatactttgaacagtgcctacctttcagtgttggctaaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123932689 118 + 133663169 atctgtgaacggacataaccccagtagtt-acctgttttagtgaagctgctataaagatggaatgagtcactatttataaagcactttgaacagcgcctgCTTTGCAATGTTGGCTAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128177561 118 + 137757926 atctgtgaacggacataaccccagtagtt-acctgtttcggtgaagctgctataaagatggaatgagtcactatttataaagcactttgaacagcgcctgCTTTGCAATGTTGGCTAAA i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12204165 118 + 20526591 atctgtgaacggacataaccccagtagtt-acctgtttcggtggagctgctataaagatggaatgagtcactatttataaagcactttgaacagcgcctgCTTTGCAATGTTGGCTAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119177074 118 + 128539186 atctgtgaacggacataaccccagtagtt-acctgtttcggtggagctgctataaagatggaatgagtcactatttataaagcactttgaacagcgcctgCTTTGCAATGTTGGCTaaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 489939 118 + 6255621 atctgtgaacggacataaccccagtagtt-acctgtttcggtggagctgctataaagatggaatgagtcactatttataaagcactttgaacagcgcctgCTTTGCACTGTTGGCTAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4553757 101 - 8658521 atctgtgaacagacgtaaccccaat------------------gagctgctataaagatggaatgagttactatttataaagcactttgaacagtgcctgCTGTGCAATGTTGGCTaaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114757839 118 + 124281992 atctgcgaatggacataagcccagtagtt-acctgtgtcagtggagctgttataaagatgaaatgagttactatttataaagtactttgaacagtgcctgCCTTTCAGTGTTGGCTAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 402089 118 - 9212255 atctgcgaatgggcgtaaccccaatagtt-acctgtttcagtagagctgttataaagatgaaatgagttactatttataaagtactttgaacagtgcctgCCTTTCGATGTTGGCTAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2816010 118 + 4466143 atctgcgaatggacttaaccccaatagtt-acctgtttcagtggagctgttagaaagatgaaatgagttgctatttataaagtactttgaacagtgcctgcctttcagtgttggctaaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1511678 117 + 5364348 atctgcgaatggacataaccctaatagtt-acctgttttagtggagctgttgtaaagatgaaatgagtt-ctattgctaaagtactttgaacagtgcctgcctttcaatgttggctaaa i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6679910 118 - 9870158 gtctgtaaatggacataaccctcacagtt-acctgtttcagtggagttgttataaagatgaaatgagttaatatttatgaagtacttagcaaagtgcctgCCTTTCAATGGTAGCTAAA i proCoq1.NW_012154285v1 C 0 I 370 s otoGar3.GL873618 4246179 118 + 7922563 atctgtgaatgaagataatcctaatagtt-acctgtttcagtatagttgttataaagatgaaaagagttagtatttataaagtacttagaaaagtacctACCTTACAATGTCGGCCAAA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33114823 113 - 38964690 atatctgtatgggggtaactccaatagtt-acctgcttcagtggagttgttattaagattaaatgagtttgtgtttgtaaactactt-----agtaccagtcctagGATGTTGGCTAAA i canFam3.chr26 I 449 C 0 s dasNov3.JH568189 787784 102 - 1116856 atctgtaagtgaagataaccccaatagttaacctgcttcagtgg-gttgttgtaaagattaaatgagttgctat----------------aaagtacctgccttacagtgTTGGTGAAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=567009.000000 s hg38.chr12_KI270834v1_alt 13015 51 + 119498 TAACCCTCTCCACTACCCAGAATTGGC---------ACTTGTTACCATTTAGTCATATTT s panTro5.chr12 127299146 51 + 137163284 TAACCCTCTCCACTACCCAGAATTGGC---------ACTTGTTACCATTTAGTCATGTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125650118 51 + 135337776 TAACCCTCTCCACTACCCAGAATTGGC---------ACTTGTTACCATTTAGTCATGTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8163065 51 - 8369578 TAACCCTCTCCACTACCCAGAATTGGC---------ACTTGTTACCATTTAGTCATATTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97811153 51 + 106955855 taaCCCTCTCCACTACCCAGAATTGGC---------ACTTGTTACCATTTAGTCGTATTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123932807 51 + 133663169 CAACCCTCTCCACTACCCAGAATTGGC---------ACGTGTTACCATTTAGTCATATTT i rheMac8.chr11 C 0 I 310 s macFas5.chr11 128177679 51 + 137757926 CAACCCTCTCCACTACCCAGAATTGGC---------ACGTGTTACCATTTAGTCATATTT i macFas5.chr11 C 0 I 3694 s cerAty1.NW_012001186v1 12204283 51 + 20526591 CAACCCTCTCCACTACCCAGAATTGGC---------ACGTGTTACCATTTAGTCATATTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119177192 51 + 128539186 caaccctctccactacccagaattggc---------acgtgttaccatttagtcatattt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 490057 51 + 6255621 CAACCCTCTCCACTACCCAGAATTGGC---------ACGTGTTACCATTTAGTCATATTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4553858 51 - 8658521 caaccctctccactacccagaattggc---------acgtgttaccatttagtcatattt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114757957 51 + 124281992 TAACCCTCTCCACTACCCAGAATCGGC---------ACTTGTTACCATTTAGTCTTGTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 402207 51 - 9212255 TAACCCTCTCCACTACCCAGAATTGGC---------ACTTGTTACCGTTCAGTCTTGTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2816128 51 + 4466143 taaCCCTCTCCACTACCCAGAATCGGC---------ACTGGTTACCATTTAGTCTTGTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1511795 51 + 5364348 taaCCCTCTCCACTACCCAGAATCGGC---------ACTTGTTACCATTTAGTCTTGTTC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4246297 51 + 7922563 TAACCTTAGCCACCACCCAGAGCTGAC---------ACTCACTACTATTTAGTCACATTT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33114936 60 - 38964690 TTACCTTATCCACCACCCAGAACTCACTGGTAACCAGCTTGTTACCAGTTAGTCCTGTTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 787886 42 - 1116856 TAACCTCatccaccacacagaatggac---------acttgttaacattta--------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=611174.000000 s hg38.chr12_KI270834v1_alt 13066 82 + 119498 GGTTTGTCTCTTTTTTTTGTAAAGTTGTACAAAT----TTGCAATACTTTTTGTCCCC-ATCCCCATTCATACTTCCTCTAttttct s panTro5.chr12 127299197 82 + 137163284 GGTTTGTCTCTTTTTTTTGTAAAGTTGTACAAAT----TTGCAATACTTTTTGTCCCC-ATCCCCATTCATACTTCCTCTACTTTCt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125650169 81 + 135337776 GGTTTGTCTC-TTTTTTTGTAAAGTTGTACAAAT----TTGCAATACTTTTTGTCCCC-ATCCCCATTCATACTTCCTCTACtttct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8163116 82 - 8369578 GGTTTGTCTCTTTTTTTTGTAAAGTTGTACAAAT----TTGCAATACTTTTTGTCCCC-ATCCCCATTCATACTTCCTCTACTTTCt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97811204 82 + 106955855 GGTTTGTCTCTTTTTTTTGTAAAGTTGTACAAAT----TTGCAATACTCTTTGTCCCC-ATTCCCATTCATACTTCCTCTACTTTCt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123933168 82 + 133663169 GGTTTGTCTCTTTTTTTTGTAAAGTTGTACAAAT----TTGCAATACTCTTTGTCCTC-ATCCCCATTCATACTTCCTCTACtttct i rheMac8.chr11 I 310 C 0 s macFas5.chr11 128181424 82 + 137757926 GGTTTGTCTCTTTTTTTTGTAAAGTTGTACAAAT----TTGCAATACTCTTTGTCCTC-ATCCCCATTCATACTTCTTCTACtttct i macFas5.chr11 I 3694 C 0 s cerAty1.NW_012001186v1 12204334 81 + 20526591 GGTTTGTCTC-TTTTTTTGTAAAGTTGTACAAAT----TTGCAATACTCTTTGTTCCC-TTCCCCATTCATACTTCCTCTACtttct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119177243 81 + 128539186 ggtttgtctctttttttggtaaagttgtacaaat----ttgcaatgctctttgtcccc-ttccccattcatacttccTCTACtttc- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 490108 82 + 6255621 GGTTTGTCTCTTTTTTTTGTAAAGTTGTACAAAT----TTGCAATACTCTTTGTTCCC-TTCCCCATTCATACTTCCTCTACtttct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4553909 81 - 8658521 ggtttgtgtcttttttttgtaaagttgtacaaat----ttgcaataccctttgtcccc-atccccattcatacttccTCTACtttc- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114758008 82 + 124281992 GGTTTGTCCATTTGTTTTGTGAAGTTGTGCAGGT----TTGTGgtactcttggtcccc-atccccactcatagttcctctactttct i calJac3.chr9 C 0 I 4 s saiBol1.JH378194 402258 78 - 9212255 GGTTTGTC----TGTTTTGTAAAGTTGTACAGGT----TCATAGTACTCTTGGTCCCC-ATCCCCATTCATAGTTCCTTTACTTTCT i saiBol1.JH378194 C 0 I 4 s cebCap1.NW_016107484v1 2816179 78 + 4466143 GGTTTGTC----TGTTTTGTAAAGTTGtacaggt----tcgtagtcctctcggtcccc-atccccattcatagttcctctactttct i cebCap1.NW_016107484v1 C 0 I 8 s aotNan1.NW_018491581v1 1511846 78 + 5364348 GGTTTGTT----TGTTTTGTAAAGTTGtacaggt----ttgtaggactcttggtcccc-atccccattcatacttcctctactttct i aotNan1.NW_018491581v1 C 0 I 4 s otoGar3.GL873618 4246348 84 + 7922563 GGTTTGCCTC--TTTTTTGTTAAGTTGTACAGATAAAATTGCCATCCTCTTTGTCCTCTGTCCCCACTGATAGTGC-TCTACTTTCT i otoGar3.GL873618 C 0 I 7 s canFam3.chr26 33114996 16 - 38964690 ------------------------------------------------GCTTCCCCCC-ACCCCC---------------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 787928 14 - 1116856 -------------------------------------------------------------------------ttccttttttgttt i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=624872.000000 s hg38.chr12_KI270834v1_alt 13148 153 + 119498 tttctattt---tttttttttttttttgagacagagtctcac-tctgtcgcccaggccggagtgcagtggcgcgatctccactcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgc s panTro5.chr12 127299279 156 + 137163284 tttctatttctttttttttttttttttgagacagagtctcac-tctgtcgcctaggccggagtgcagtggcgcgatctccgctcactgcaagctccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125650250 153 + 135337776 tttctattc---tttttttttttttttgagacagagtctcac-tctgtcgcccaggccggagtgcagtggcgcgatctccgctcactgcaagctccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8163198 156 - 8369578 tttctatttttttttttttttttttttgagacagagtctcac-tctgtcgcccaggccggagtgcagtggcgtgatctccgctcactgcaagctccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97811286 154 + 106955855 ttttttttt--ttttttttttttttttgagacggagtctcgc-tctgtcgcccaggctggagtgcagtggtgcgatctcagctcactgtaacctccacctcccgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcac i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123933250 148 + 133663169 ttct--------tttttttttttttttgagatggagtctcac-tgtgtcacccaggctggagtgcagtggagtgatctcagctcactgcaacttccacctcccaggttcacgccattctcctgcctcagcctccggagtagctgggactacaggcgc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128181506 147 + 137757926 ttc---------tttctttttttttttgagatggagtctcac-tgtgtcacccaggctggagtgcagtggagtgatctcagctcactgcaacttccacctcccaggttcacgccattctcctgcctcagcctccggagtagctgggactacaggcgc i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12204415 145 + 20526591 ------------tttttctttttttttgagatggagtctcacttgtgtcacccaggctggagtgcagtggtgtgatctcagctcactgcaacttccacctcccgggttaacgccattctcctgcctcagcctcccgagtagctgggactacaggcgc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119177324 143 + 128539186 ------------tttttttttttttttgagatggagtctcac-tgtgtcacccaggctggagtgcagtggcgtgatctcagctcactgcaacttccacctcccgggttcacgccattctcctg-ctcagcctctggagtagctgggactacaggcgc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 490190 147 + 6255621 tt----------tttttttttttttttgagatagagtctcacttgtgtcacccaggctggagtgcagtggcatgatctcagctcactgcaacttccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4553990 144 - 8658521 ------------tttttttttttttttgagatggagtctcac-tgtgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaacttccacctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgc i colAng1.NW_012116043v1 C 0 C 0 s canFam3.chr26 33115012 91 - 38964690 ---------------CCCTGTCTTTGTgaaacaagg-----c-tgtagagaaaaagttg-----------------ctatactctctgtcccttctccccatca--------caactctccctcc----cctttcaagagg---------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 787942 105 - 1116856 tgtctctct---catttttttttttggaaaacacagtcttac------------ggatgaagt----tgatgtgctctttgttcctc---acccccatctgtag--------ttgttcttgtgtttt--------------------ctagaggc-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I e otoGar3.GL873618 4246432 7 + 7922563 I e aotNan1.NW_018491581v1 1511924 4 + 5364348 I e cebCap1.NW_016107484v1 2816257 8 + 4466143 I e saiBol1.JH378194 402336 4 - 9212255 I e calJac3.chr9 114758090 4 + 124281992 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=37274.000000 s hg38.chr12_KI270834v1_alt 13301 4 + 119498 cagc s panTro5.chr12 127299435 4 + 137163284 cagc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125650403 4 + 135337776 cagc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8163354 4 - 8369578 cagc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97811440 4 + 106955855 cagc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123933398 4 + 133663169 ccgc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128181653 4 + 137757926 cagc i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12204560 4 + 20526591 cagc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119177467 4 + 128539186 ccgc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 490337 4 + 6255621 cagc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4554134 4 - 8658521 cagc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114758094 4 + 124281992 cagc i calJac3.chr9 I 4 C 0 s saiBol1.JH378194 402340 4 - 9212255 CAGC i saiBol1.JH378194 I 4 C 0 s aotNan1.NW_018491581v1 1511928 4 + 5364348 cagc i aotNan1.NW_018491581v1 I 4 C 0 s canFam3.chr26 33115103 4 - 38964690 cagc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 788047 3 - 1116856 -agt i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I e otoGar3.GL873618 4246432 7 + 7922563 I e cebCap1.NW_016107484v1 2816257 8 + 4466143 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=57602.000000 s hg38.chr12_KI270834v1_alt 13305 5 + 119498 cacTG s panTro5.chr12 127299439 5 + 137163284 cactg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125650407 5 + 135337776 cactg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8163358 5 - 8369578 cacTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97811444 5 + 106955855 cactg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123933402 5 + 133663169 cactg i rheMac8.chr11 C 0 I 143 s macFas5.chr11 128181657 5 + 137757926 cactg i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12204564 5 + 20526591 cactg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119177471 5 + 128539186 cactg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 490341 5 + 6255621 cactg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4554138 5 - 8658521 cactg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114758098 5 + 124281992 cacta i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 402344 5 - 9212255 CACTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2816265 5 + 4466143 cacta i cebCap1.NW_016107484v1 I 8 C 0 s aotNan1.NW_018491581v1 1511932 5 + 5364348 cacta i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33115107 5 - 38964690 cacta i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 788050 5 - 1116856 cactg i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I e otoGar3.GL873618 4246432 7 + 7922563 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I a score=260588.000000 s hg38.chr12_KI270834v1_alt 13310 28 + 119498 TCATGAATTTGTTATGATTCCTTCCAGA s panTro5.chr12 127299444 28 + 137163284 tcatgaatttgttatgattccttccaga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125650412 28 + 135337776 tcatgaatttgttatgattccttccaga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8163363 28 - 8369578 TCATGAATTTGTTATGATTCCTTCCAGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97811449 28 + 106955855 tcatgaatttgttatgattccttccaga i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128181662 28 + 137757926 tcatgaatttgttatgattccttccaga i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12204569 28 + 20526591 tcatgaatttgttatgattccttccaga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119177476 28 + 128539186 tcatgaaattgttatgattccttccaga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 490346 28 + 6255621 tcatgaatttgttatgattccttccaga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4554143 28 - 8658521 tcatgaatttgttatgattccttccaga i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114758103 28 + 124281992 tcctgaatctgttgtgattccttccaga i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 402349 28 - 9212255 TCATGAATCTGTTGTGATTCCTTCCAGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2816270 28 + 4466143 tcatgaatctgttgtgattccttccaga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1511937 28 + 5364348 tcatgaatctgtgttgattccttccaga i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33115112 28 - 38964690 gcatgaatgtgttgtggttccttccagc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 788055 28 - 1116856 tcatgaacctgctgtgacccttcctact i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I e otoGar3.GL873618 4246432 7 + 7922563 I e macNem1.NW_012010578v1 10580132 2539 - 16319837 I e rheMac8.chr11 123933407 143 + 133663169 I a score=2062820.000000 s hg38.chr12_KI270834v1_alt 13338 187 + 119498 CCACAATTT-CACACTTTTTAAATAAATGTATATGTATCCATGAACCATTTCCTGAATGGCGGGAAACAACAGAGAACACTGTCCCTTGTGATAGAGAACAGAGGCTGGCCAGACATGATCTTTGGCCTGCTAATCAAAGCTCTTTATCTAGCGTCAGCCTGG-Gc-aggggctctgagcctcggcgctg s panTro5.chr12 127299472 187 + 137163284 ccacaattt-cacactttttaaataaatgtgtatgtatccatgaaccatTTCCTGAATGGCAGGAAACAACAGAGAACACTGTCCCTTGTGATAGAGAACAGAGGCTGGCCAGACATGATCTTTGGCCTGCTAATCAAAGCTCTTTATCTAGCGTCAGCCTGG-Gc-aggggctctgagcctcggcgctg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125650440 187 + 135337776 ccacaattt-cacactttttaaataaatgtgtatgtatccatgaaccatTTCCTGAATGGCAGGAAACAACAGAGAACACTGTCCCTTGTGATAGAGAACAGAGGCTGGCCAGACATGATCTTTGGCCTGCTAATCAAAGCTCTTTATCTAGCGTCAGCCTGG-Gc-aggggctctgagcctcggcgctg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8163391 187 - 8369578 CCACAATTT-CACACTTTTTAAATAAATGTATATGTATCCATGAACCATTTCCTGAATGGCAGGAAACAACAGAGAACACTGTCCCTTGTGATAGAGAACAGAGGCTGGCCAGACATGATCTTTGGCCTGCTAATCAGAGCTCTTTATCTAGCGTCAGCCTGG-Gc-aggggctctgagccttggcgctg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97811477 187 + 106955855 ccataattt-catacttttaaaataaatgtatatgtatccatgaaccatTTCCTGAATGGCAGGAAACAACAGAGAACACTGTCCCTTGTGATAGAGAACAGAGGCTGGCCAGACGTGATCTTTGTCCTGCTAATCAAAGCTCTTTATCTAGCGTCAGCCTGG-Gc-aggggctctgagccttggcgctg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123933550 187 + 133663169 cCATAATTT-CATACTTTTTAAATAAATGTGTATGTATCCATGAACCATTTCTGGAATGGCAGGAAACAACAGAGAAAACTGTCCCTTGTGATGGAGAACAGAGGCTGACCAGACATGATCTTTGGCCTGCTAATCAAAGCTCTTTATCTAGGGTCAGCCCGG-Gc-aggggctctgagccttggcactg i rheMac8.chr11 I 143 C 0 s macFas5.chr11 128181690 187 + 137757926 ccataattt-catactttttaaataaatgtatatgtatccatgaaccatTTCTGGAATGGCAGGAAACAACAGAGAAAACTGTCCCTTGTGATGGAGAACAGAGGCTGACCAGACATGATCTTTGGCCTGCTAATCAAAGCTCTTTATCTAGGGTCAGCCCGG-Gc-aggggctctgagcctcggcactg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10582671 187 - 16319837 cCATAATTT-CATACTTTTTAAATAAATGTATATGTATTCATGAACCATTTCTGGAATGGCAGGAAACAACAGAGAAAACTGTCCCTTGTGATGGAGAACAGAGGCTGACCAGAGATGATCTTTGGCCTGCTAATCAAAGCTCTTTATCTAGGGTCAGCCCGG-Gc-aggggctctgagcctcggcactg i macNem1.NW_012010578v1 I 2539 C 0 s cerAty1.NW_012001186v1 12204597 187 + 20526591 ccataattt-catactttttaaataaatgtatatgtatccatgaaccatTTCTGGAATGGCAGCAAACAACAGAGAAAACTGTCCCTTGTGATGGAGAACAGAGGCTGAGCAGACATGATCTTTGGCCTGCTAATCAAAGCTCTTTATCTAGCGTCAGCCCGG-Gc-aggggctctgagcctcggcactg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119177504 187 + 128539186 ccataattt-catactttttaaataaatgtatatgtatccatgaaccatTTCTGGAATGGCAGGAAACAACAGAGAAAACTGTCCCTTGTGATGGAGAACAGAGGCTGACCAGACATGATCTTTGGCCGGCTAATCAAAGCTCTTTATCTAGCGTCAGCCCGG-Gc-aggggctctgagccgcggcacta i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 490374 187 + 6255621 ccataattt-catactttttaaataaatgtatatgtatccacgaaccatTTCTGGAATGGCAGCAAACAACAGAGAAAACTGCCCCTTGTGATGGAGAACAGAGGCTGAGCAGACATGATCTTTGGCCTGCTAGTCAAAGCTCTTTATCTAGCGTCAGCCCGG-Gc-aggggctctgagcctcggcactg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4554171 187 - 8658521 ctataattt-catactttttaaatacatgtatatgtatccatgaaccatTTCTGGAATGGCAGGAAACAACAGAGAAAACTGTCCCTTGTGATGGAGAACAGAGGCTGGCCAGACATGATCTTTGGCCTGCTAATCAAAGCTCTTTATCTAGCGTCAGCCTGG-Gc-aggggctctgagcctcggcacta i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114758131 188 + 124281992 ccataattt-catattttaaaaataaatgtatatgtatccgtgaaccatTTCCTGAATGGCAGGAAACAACAGAGAAGACTCTTCCTTGTGATGGAGAACAGAGGCTGGCCACACACAGTCTTTGGCCTGCTAATCAAAGCTCTTCATCTAGCATTGGACTGGAGc-aggggctctgagcctcggcactg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 402377 188 - 9212255 CCATAATTT-CATACTTTAAAAACAAATGTATATGTCTCCGTGAACCATTTCCTGAATGGCAGGAAACAACAGAGAAAACTGTCCCTTGTGAGAGAGAACAGAGGCTGGCCGCACACGGTCGCTGGCCTGCTAATCAAAGCTCTTCATCTAGCTTCGGCCTGGAGc-aggggctctgagcctcggcactg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2816298 188 + 4466143 ccataattt-catactttaaaaataaatgtatatgtatccgtgaaccatTTCCTAAATGGCAGGAAACAACAGAGAAAACTGTCCCTTGTGATAGAGAACCGAGGCTGGCCACACACGATCTTTGGCTTGCTAATCAAAGCTCTTCATCTAGCTTCGGCCTGGAGc-aggggctctgagcctcggcactg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1511965 188 + 5364348 ccataattt-catactttaaaaataaacatatatgtatccttgaaccatTTCCTGAATGGCAGGAAACAACAGAGAAAACTGTCCCTTGTGATAGAGAACAGAGGCTGGCCACACACGATCGTTGGCCTGCTAATCAAAGCTCTTCATCTAGCGTCGGCCTGGAGc-aggggctctgagcctcggcactg i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33115140 186 - 38964690 ccgtgatttgcatac-ttggacacaaatgtatgtgtatccacaaacag--taCTGCCTGGCGGGAAACAATAGACAAAACTGTCTCTGGTGATACCAGCCAGAGCATGGCCAGAACGAACCTTCGATCTGCCGGTCAAAGCTCTATATTTAGTGTCAGCCTGG-GCTAGGTGTTCTCCACCTTGGCCATG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 788083 175 - 1116856 tcatgtttc-tatgctttc-acataaacg----tgtgttcatgaacaa--tatTGAATGGCAGAAACCC----AGCAGTCTGTCCCCTGTGATAGAGAACAGAGCATGGCCAGGCACCATCTTTGGGCAGTTAATCAAAGCTCTCTATTTAGTAACGGAGTAGAGc-aggatttctcaacc--agcacca i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I e otoGar3.GL873618 4246432 7 + 7922563 I a score=3796344.000000 s hg38.chr12_KI270834v1_alt 13525 341 + 119498 ctggcatttggggctgg-atgactctttgctgt----------------------g-------gctgc-tgtcctgtgcattacaggacattacgt-------------------------agcatccc--tgaccacaacctactagatgccagtagcaccccc-tccctagttatgacaaccagaaacatc--------tccagacattgcc--aatgtcccc--------------tggtggcaaaatcatccccggctgagaaTGAGTGTTGC-ACGGTAATTCCTCCATTCCAAATTAA----CAGAGCACTTAGGAACGAGTGCTTT----CTCCTATTACTTTCCCTTTAATCAATGCTAACTTCCTTCTT-AAAGTAAGATTCATATTTTCGACTGCATATTTTTCCTTTCTCAAAGGGGAGGCTT s panTro5.chr12 127299659 341 + 137163284 ctggcatttggggctgg-atgactctttgctgt----------------------g-------gctgc-tgtcctgtgcattacaggacattacgt-------------------------agcatccc--tgaccacaacctactagatgccagtagcaccccc-tccctagttatgacaaccagaaacatc--------tccagacattgcc--aatgtcccc--------------tggtggcaaaatcatccccggctgagaaTGAGTGTTGC-ACGGTAATTCCTCCATTCCAAATTAA----CAGAGCACTTAGGAACGAGTGCTTT----CTCCCATTACTTTCCCTTTAATCAATGCTAACTTCCTTCTT-AAAGTAAGATTCATATTTTTGACTGCATATTTTTCCTTTCTCAAAGGGGAGGCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125650627 341 + 135337776 ctggcatttggggctgg-atgactctttgctgt----------------------g-------gctgc-tgtcctgagcattacaggacattacgt-------------------------agcatccc--tgaccacaacctactagatgccagtagcaccccc-tccctagttatgacaaccagaaacatc--------tccagacattgcc--aatgtcccc--------------tggtggcaaaatcatccccggctgagaaTGAGTGTTGC-ACGGTAATTCCTCTATTCCAAATTAA----CAGAGCACTTAGGAACGAGTGCTTT----CTCCCATTACTTTCCCTTTAATCAATGCTAACTTCCTTCTT-AAAGTAAGATTCATATTTTCGACTGCATATTTTTCCTTTCTCAAAGGGGAGGCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8163578 339 - 8369578 ctggcatttggggcggg-atgactc--tgctgt----------------------g-------ggtgc-tgtcctgggcattacaggacattacgt-------------------------agcatccc--tgaccgcaacctactagatgccagtagcaccccc-tccctagttatgacaaccggaaacatc--------tccagacattgcc--aatgtcccc--------------tggtggcaaaatcatccccggctgagaaTGAGTGTTGC-ACGGTAATTCCTCCATTCCAAATTAA----CAGAGCACTTAGGAACGAGTGCTTT----CTCCCATTACTTTCCCTTTAATCAATTCTAACTTCCTTCTT-AAAGTAAGATTCATATTTTCGACTGCATATTTTTCCTTTCTCAAAGGGGAGGCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97811664 342 + 106955855 ctggcatttggggctgg-atgactctttgccat----------------------g-------ggtgc-tgtcctgtgcattacaggacattacgt-------------------------agcatccctgtgaccgcaacctactagatgccagtagcaccccc-tccctagttatgacaaccagaaacatc--------tccagacattgcc--aatgtcccc--------------tggtggcaaaatcatccccggctgagaagcagtgTTGC-ATGGTAATTCCTCCATTCCAGATTAA----CAGAGCACTTAGGAACAAGTGCTTT----CTCCCATTACTTTCCCTTTCATTAATGCGAACTTCCTTCTT-AAAGTAAGATTCATATTTTCGACTGCAGGTTTTTCCTTTCTCAAA-GGGAGGCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123933737 340 + 133663169 ctggcatttggggctgg-atgactctttgccgt----------------------g-------ggtgc-tgtcctgtacattacaggatattatgt-------------------------agcatccc--tgatcgcaacctactagatgccagtagcaccccc-tccctagttatgacaaccagaaacatc--------tccagacattgcc--aatgtcccc--------------tggtggcaaaatcatccccagttgagaatcaGTATTGC-AGGGTAATTCCTCCATTCCAAATTAA----CAGAGCACTTAGGAACAAGTGCTTT----CTTCCA-TACTTTCCCTTTAATTAATGCTGACTTCCTTCTT-AAAGTAAAATTCATATTTTTGACTGCATGTTTTTCCTTTCTCAAAGGGGAGTCTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128181877 340 + 137757926 ctggcatttggggctgg-atgactctttgccgt----------------------g-------ggtgc-tgtcctgtacattacaggatattatgt-------------------------agcatccc--tgatcgcaacctactagatgccagtagcaccccc-tccctagttatgacaaccagaaacatc--------tccagacattgcc--aatgtcccc--------------tggtggcaaaatcatccccggttgagaatcaGTATTGC-AGGGTAATTCCTCCATTCCAAATTAA----CAGAGCACTTAGGAACAAGTGCTTT----CTTCCA-TACTTTCCCTTTAATTAATGCTGACTTCCTTCTT-AAAGTAAAATTCATATTTTTGACTGCATGTTTTTCCTTTCTCAAAGGGGAGTCTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10582858 340 - 16319837 ctggcatttggggctgg-atgactctttgctgt----------------------g-------ggtgc-tgtcctgtacattacaggatattatgt-------------------------agcatccc--tgatcgcaacctactagatgccagtagcaccccc-tccctagttatgacaaccagaaacatc--------tccagacattgcc--aatgtcccc--------------tggtggcaaaatcatccccggttgagaatcaGTATTGC-AGGGTAATTCCTCCATTCCAAATTAA----CAGAGCACTTAGGAACAAGTGCTTT----CTTCCA-TACTTTCCCTTTAATTAATGCTGACTTCCTTCTT-AAAGTAAAATTCATATTTTTGACTGCATGTTTTTCCTTTCTCAAAGGGGAGTCTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12204784 339 + 20526591 ctggcatttggggctgg-atgactctttgccat----------------------g-------ggtgc-tgtcctgtacattacaggatattatgt-------------------------agcatccc--tgatcgcaacctactagatgccagtagca-cccc-tccctagttatgacaaccagaaacatc--------tccagacattgcc--aatgtcccc--------------tggtggcaaaatcatccccggttgagagtcaGTATTGC-AGGGTAATTCCTCCATTCCAAATTAA----CAGAGCACTTAGGAACAAGTGCTTT----CTTCCA-TACTTTCCCTTTAATTAATGCTGACTTCCTTCTT-AAAGTAAAATTCATATTTTTGACTGCATGTTTTTCCTTTCTCAAAGGGGAGGCTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119177691 340 + 128539186 ctggcatttggggctgg-atgactctttgccgt----------------------g-------ggtgc-tgtcctgtacattacacgatattatgt-------------------------agcatccc--tgatcgcaacctactagatgccagtagcaccccc-tccctagttatgacaaccagaaacatc--------tccagacattgcc--agtgtcccc--------------tggtggcaaaatcatccccggttgagaatcaGTATTGC-AGGGTAATTCCTCCATTCCAAATGAA----CAGAGCACTTAGGAACAAGTGCTTT----CTTCCA-TACTTTCCCTTTAATTAATGCTGACTTCCTTCTT-AAAGTAAAATTCATATTTTTGACTGCATGTTTTTCCTTTCTCAAAGGGGAGGTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 490561 339 + 6255621 ctggcatttggggctgg-atgactctttgccat----------------------g-------ggtgc-tgtcctgtacattacaggatattatgt-------------------------agcatccc--tgatcgcaacctactagatgcca-tagcaccccc-tccctagttatgacaaccagaaacatc--------tccagacattgcc--aatgtcccc--------------tggtggcaaaatcatccccggttgagagtcaGTATTGC-AGGGTAATTCCTCCATTCCAAATTAA----CAGAGCACTTAGGAACAAGTGCTTT----CTTCCA-TACTTTCCCTTTAATTAATGCTGACTTCCTTCTT-AAAGTAAAATTCATATTTTTGACTGCATGTTTTTCCTTTCTCAAAGGGGAGGCTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4554358 339 - 8658521 ctggcatttggggctgg-atga-tctttgccgt----------------------g-------ggtgc-tgtcctgtgcattacaggatattatgt-------------------------agcatccc--taatcgcaacctactagatgccagtagcaccccc-tccctagttatgacaaccagaaacatc--------tccagacattgcc--aatgtcccc--------------tggtggcaaaatcatccccggttgagaatcaGTATTGC-AGGGTAATTCCTCCATTCCAAATTAA----CAGAGCACTTAGGAACAAGTGCTTT----CTTCCA-TACTTTCTGTTTAATTAATGCTGACTTCCTTCTT-AAAGTAAAATTCATGTTTTTGACTGCATGTTTTTCCTTTCTCAAAGGGGAGGCTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114758319 338 + 124281992 ctgccatttggggctgg-aagactctttgctgt----------------------g-------ggcgc-tgtcctgtgcattgcaggccattaact-------------------------aacatccc--tggccgtgacccactagatgtcagtggcaccccc-tcttcacttatgacaactagaaacatc--------tccagacattgcc--aatgt-gcc--------------tggtggcaaaattatccctggttaagaaccagtgTT-C-AGGGTAATTCCCTCATTCCAAATCAAATTCCAAAGAA---AGG-ACAAGTACTTT----TTTCCA-TGCTTTCCCTTTAATTAACGCTAACTTCCTTCTT-AAAGTAAGATTCATATTTTTGACTGCAAGTTTTTCCTTTCTCAAAGGGGAGGCTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 402565 336 - 9212255 ctgccatttggggctgg-aagactc--tgccat----------------------g-------ggtgc-tgtcctgtgcattgcaggacattaagt-------------------------agcattcc--tggctgtgacccactagatgccagtggcaccccc-tccccagttgtgacaaccagaaacatc--------tccagacactgcc--agtgt-ccc--------------tggtggcaaaattatccctggttgagaaccagtgTTGC-AGGGTGATTCCCTCCTTCCATATCAA----CAGAGTACTTAGG-ACAAGTACTTT----CTTCCA-TGCCTTACTTTTAATTAACGCTAACTTCCTTCTT-AAAGTAAGATTCATATTTTTGACTGCAAGTTTTTCCTTTCTCAAGGGGGAGGCTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2816486 336 + 4466143 ctgccatttggggctgg-aagactc--tgccgt----------------------g-------ggtgc-tgtcctgtgcattgcaggacattaagt-------------------------agcatccc--tggctgtgacccactagatgccagtgacaccccc-tccccagttgtgacaaccagaaacatc--------tccaaacattgcc--aatgt-ccc--------------tggtggcaaacttatccctggttgagaaccagtgTTGC-AGGGTAATTCCCTCATTCCAGATCAA----CAGAGTACTTAGG-ACAAGTACTTT----CTTCCA-TGCTTTCCCTTTAATTAACGCTAACTTCCTTCTT-AAAGTAAGATTCATATTTTTGACTGCAAGTTTTTCCTTTCTCAAAGGGGACGCTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1512153 310 + 5364348 ctgccatttggggcggg-aagactctttgccgt----------------------g-------ggtgc-tgtcctgtgcattgcaggacattaagt-------------------------agcatccc--tggccgtgacccactagataccagtggcaccccc-tccccagttatgacaaccagaaacgtc--------tccaga-------------------------------------------------TTGGTTGAGAACCAGTGTTGC-AGGGTAATTCCCTCATTCCAAATCAA----CAGAGGACTTAGG-ACATGTGCTTTCTTCCTTCCA-TGCTTTCCCTTTAATTAATGCTAACTTCCTTCTT-GAAGTAAGATTCATATTTTTGACTGCAAGTTTTTCCTTTCTCAAAGAGGAGGCTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4246439 342 + 7922563 ctagtgttttaggcggg-gtgactctttgctgt----------------------g-------ggtgc--atcctgagtattacaaggtactaggtaattacctagtattacaaggtactcagtgtccc--tggccttggcccactaggtgccaatagctctctc-tccctagttatgaca--cagaaacatc--------tccacacattgcc--agtgtcccc--------------tggtggcaaaatcatcctgagttgagaaccagtgTTAG-AGTACAATTCCTTTGTTCCATATAAA----CAAAGCACTTAGG-ACAAGAACTTT----ATTCCA-CACTTTCTTTTTAATC----CTGATTTTTTGCTTAAAAGTAATATTCCTATTTTCAACTGTATATTTGTCCTTt---------------- i otoGar3.GL873618 I 7 C 0 s canFam3.chr26 33115326 367 - 38964690 TTGGTGGTTGGGTCAGATATTGCTCGGCACTGTGTGTGGATGTGTGGGGgtggtgg-------ggggc-caccctgtgcgct------------gt-------------------------a----tcc--tggcttctaccctcaggaagccaggagca-ttgc-tctctagtcacaacaaccagaagtgtcattgctgacactgacattgccctagtgtcccccgCACCCCACCCTGTGGGGGCAGAACCA-CTGTGGTTATGAATCAGCATTGT-AGAAGAATCCCTTTATTCTAAATAAA----CAAAGCATTTGGGATCAAGGACATA----GCTCCATTACTTTCCCTT--GTTAATACTGATGTCCTTATT-ATACTAAAATTCTTGTTTTTGGTCATATGTGT-TCCTTTCTCAAAGTGAAGTTTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 788258 344 - 1116856 gtgacatttgg-------atgagtctttgttgg----------------------ggtggggcggtgtgtgtcttgtatattgtaggatgttgagc-------------------------agcatccc--cagcctctatcctctaggtgcaaggctcaccctcttccccagttgtgacaatcagaaatacc--------ctctgacattgccc-agtggcccc--------------tggtggcaaaattgctcccagttgagaatcgctgTTTCTAGCGTAATTCCTTTATTCCAGATAAA----CAAAGCACTTCGGATCAACTGCTTT----ACTTCA-CAGTTTCCCTGTAATTAGTGCTGGCTTCCTTCTT-AAAGTAAGATTCATATTTTTGATGACATGTTT-TCCTTTCTCAAAGAGGAGGCTC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I a score=127168.000000 s hg38.chr12_KI270834v1_alt 13866 24 + 119498 CTTCAGTATTCTGTTTC--------------------CAGtttt s panTro5.chr12 127300000 24 + 137163284 CTTCAGTATTCTGTTTC--------------------CAGtttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125650968 24 + 135337776 CTTCAGTATTCTGTTTC--------------------CAGtttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8163917 24 - 8369578 CTTCAGTATTCTGTTTC--------------------CAGtttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97812006 24 + 106955855 CTTTAGTATTCTGTTTC--------------------CAttttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123934077 25 + 133663169 ATACAGTATTCTGTTTC-------------------TTTTtttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128182217 22 + 137757926 ATACAGTATTCTGtttc----------------------tttct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10583198 44 - 16319837 ATACAGTAttctgtttcttttttttttttttttttttttttttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12205123 17 + 20526591 ATACAGTATTCTGtttc--------------------------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119178031 22 + 128539186 ATACAGTATTCTGTTTC----------------------ttttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 490900 22 + 6255621 ATACAGTATTCTGTTTC----------------------Ttttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4554697 18 - 8658521 ATACAGTATTCTGTttc--------------------------t i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114758657 24 + 124281992 ATATAATATTTTGCTTC--------------------CACTTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 402901 22 - 9212255 ATACAATATTCTGCTTC--------------------CAC--TT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2816822 24 + 4466143 ATACAATGTTCTGCTTC--------------------TACTTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1512463 24 + 5364348 ATACCATATTCTGCTTC--------------------CACtttt i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33115693 19 - 38964690 A-----TATTTTGTTTC--------------------TACTTTT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I e dasNov3.JH568189 788602 0 - 1116856 C e otoGar3.GL873618 4246781 0 + 7922563 C a score=66699.000000 s hg38.chr12_KI270834v1_alt 13890 12 + 119498 --------tttttttttttt s panTro5.chr12 127300024 12 + 137163284 --------tttttttttttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125650992 12 + 135337776 --------tttttttttttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8163941 12 - 8369578 --------gttttttttttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97812030 12 + 106955855 --------tttttttttttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123934102 12 + 133663169 --------tttttttttttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128182239 12 + 137757926 --------tttttttttttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10583242 12 - 16319837 --------tttttttttttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12205140 11 + 20526591 ---------ttttttttttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119178053 20 + 128539186 ttcttttcttttcttttttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 490922 12 + 6255621 --------cttttttttttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4554715 12 - 8658521 --------tttttttttttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114758681 8 + 124281992 --------tttttttt---- i calJac3.chr9 C 0 I 8 s saiBol1.JH378194 402923 8 - 9212255 --------tttttctt---- i saiBol1.JH378194 C 0 I 8 s cebCap1.NW_016107484v1 2816846 12 + 4466143 --------TTTTTTTTTTTT i cebCap1.NW_016107484v1 C 0 I 545 s aotNan1.NW_018491581v1 1512487 3 + 5364348 --------ttt--------- i aotNan1.NW_018491581v1 C 0 I 8 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I e dasNov3.JH568189 788602 0 - 1116856 C e canFam3.chr26 33115712 0 - 38964690 C e otoGar3.GL873618 4246781 0 + 7922563 C a score=1265909.000000 s hg38.chr12_KI270834v1_alt 13902 156 + 119498 ----------ttttttttttttCagacagggcgttgctttgttgcccaggttggagtgcagtggtgtgatcacagctcattgcagcctctacctcctgggctcaagcaatccacccgcctcagcctcccaaagtggtgggattacaggcatgagctattgtgcctg s panTro5.chr12 127300036 154 + 137163284 ----------tttttttttt--Cagacagggcgttgctttgttgcccaggttggagtgcagtggtgtgatcacagctcattgcagcctctacctcctgggctcaagcaatcctcccgcttcagcctcccaaagtggtgggattacaggcatgagctgttgtgcctg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125651004 148 + 135337776 ----------tcct--------tagacagggcgttgctttgttgcccaggttggagtgcagtggtgtgatcacagctcattgcagcctctacctcctgggctcaagcaatcctcccgcctcagcctcccaaagtggtgggattacaggcatgagctattgtgcctg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8163953 148 - 8369578 ----------tttt--------cagacagggcgttgctttgttgcccaggttggagtgcagtggtgtgatcacagctcattgcagcctctacctcctgggctcaagcaatcctcccgcctcagcctcccaaagtggtgggattacaggcatgagctattgtgcctg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97812042 150 + 106955855 ----------tttttt------gagacagggccttgctttgttgcccaggctggagtgcagtggtgtgatcacagctcattgcagcctctacctcctgggctcaagtaatcctcctgcctcagcctcccaaagtggtgggattacaggcatgagctattgtgcctg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123934114 147 + 133663169 ----------tttt--------gagatggggccttgctttgttgcccagcctagagt-cagtggtgtgatcacagctcattgcagcctctacctcctgggctcaagcagtcctcctgcctcagcctcctaaagtggtgggattacaggcatgagctattgtgcctg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128182251 147 + 137757926 ----------tttt--------gagatggggccttgctttgttgcccagcctagagt-cagtggtgtgatcacagctcattgcagcctctacctcctgggctcaagcagtcctcctgcctcagcctcctaaagtggtgggattacaggcatgagctattgtgcctg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10583254 147 - 16319837 ----------tttt--------gagatggggccttgctttgttgcccagcctagagt-cagtggtgtgatcacagctcattgcagcctctacctcctgggctcaagcagtcctcctgcctcagcctcctaaagtggtgggattacaggcatgagctattgtgcctg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12205151 147 + 20526591 ----------tttt--------gagatggggccttgctttgttgcccagcctggagt-cagtggtgtgatcacagctcattgcagcctctacctcctgggctcaagcagtcctcctgcctcagcctcctaaagtggtgggattacaggcatgagctattgtgcctg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119178073 147 + 128539186 ----------tttt--------gagatggggccttgctttgttgcccagcctggagt-cagtggtgtgatcacagctcattgcagcctctacctcctgggctcaagcagtcctcctgcctcagcctcctaaagtggtgggattacaggcatgagctattatgcctg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 490934 147 + 6255621 ----------tttt--------gagatggggccttgctttgttgcccagcctggagt-cagtggtgtgatcacagctcattgaagcctctacctcctgggctcaagcagtcctcctgcctcagcctcctaaagtggtgggattacaggcatgagctattgtgcctg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4554727 147 - 8658521 ----------tttt--------gagatggggccttgctttgttgcccagcctggagt-cagcggtgtgatcacagctcattgcagcctctacctcctgggctcaagcggtcctcctgcctcagcctcctaaagtggtgggattacagccatgagctattgtgcctg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114758697 148 + 124281992 ----------tttt--------gagatgggaccttgctttgtttcccaggctggagtgcaatggtgtgatcacagctcattgcaacctctacctcctgggttcaagcaatcctcctgcctcagcctcccaaagtggtgggattacaggcataaaccattgtgcctg i calJac3.chr9 I 8 C 0 s saiBol1.JH378194 402939 148 - 9212255 ----------tttt--------gagatggggccttgctttgtttcccaggctggagagcaatggtgtggtcacagctcatcgcagcctctacctcctgggctcaagcaatcctctcgcctcagcctcccaaagtggtgggattacaggcataagccattgtgcctg i saiBol1.JH378194 I 8 C 0 s aotNan1.NW_018491581v1 1512498 148 + 5364348 ----------tttt--------gagatggggccttgctttgtttcccaggctggagtgcaatggtgcggtcacagctcattgcagcctctacctcctgggctcaagcaatcctcctgcctcagccctgcaaagtggtgggattacaggcataagccattgtgcctg i aotNan1.NW_018491581v1 I 8 C 0 s otoGar3.GL873618 4246781 125 + 7922563 tttttttcagtttt--------tggctggggctgggtttgaacccaccacctccggt------atatggggccagcg---------ccctactcactgagccacaggcactgcccTATTTGTCCTTTTTTAAAGGGGAGGTTTATG------------------CA i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I e dasNov3.JH568189 788602 0 - 1116856 C e canFam3.chr26 33115712 0 - 38964690 C e cebCap1.NW_016107484v1 2816858 545 + 4466143 I a score=196246.000000 s hg38.chr12_KI270834v1_alt 14058 18 + 119498 gcCTTCTGCTTCCACTTT s panTro5.chr12 127300190 18 + 137163284 gcCTTCTGCTTCCACTTT i panTro5.chr12 C 0 I 1 s panPan2.chr12 125651152 18 + 135337776 gcCTTCTGCTTCCACTTT i panPan2.chr12 C 0 I 1 s gorGor5.CYUI01015152v1 8164101 18 - 8369578 gcCTTCTGCTTCCACTTT i gorGor5.CYUI01015152v1 C 0 I 1 s nomLeu3.chr10 97812192 18 + 106955855 gcCTTCTGCTTCCACTTT i nomLeu3.chr10 C 0 I 1 s rheMac8.chr11 123934261 18 + 133663169 gcCTTCTGCTTCCACTTT i rheMac8.chr11 C 0 I 1 s macFas5.chr11 128182398 18 + 137757926 gcCTTCTGCTTCCACTTT i macFas5.chr11 C 0 I 1 s macNem1.NW_012010578v1 10583401 18 - 16319837 gccttctgcttccacttt i macNem1.NW_012010578v1 C 0 I 1 s cerAty1.NW_012001186v1 12205298 18 + 20526591 gcCTTCTGCTTCCACTTT i cerAty1.NW_012001186v1 C 0 I 1 s chlSab2.chr11 119178220 18 + 128539186 gcCTTCTGCTTCCACTTT i chlSab2.chr11 C 0 I 1 s manLeu1.NW_012103587v1 491081 18 + 6255621 gcCTTCTGCTTCCACTTT i manLeu1.NW_012103587v1 C 0 I 1 s colAng1.NW_012116043v1 4554874 18 - 8658521 gcCTTCTGCTTCCACTTT i colAng1.NW_012116043v1 C 0 I 1 s calJac3.chr9 114758845 18 + 124281992 gcTTTCTGCTTCATTTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 403087 18 - 9212255 gcTTTCTGCTTCCAtttt i saiBol1.JH378194 C 0 I 308 s aotNan1.NW_018491581v1 1512646 18 + 5364348 gcTTCCTACCTCCATTTT i aotNan1.NW_018491581v1 C 0 I 1 s otoGar3.GL873618 4246906 18 + 7922563 GTGTTCTGTTTCCACTTT i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 788602 18 - 1116856 GTGTCCTGCTTCCACTTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I e canFam3.chr26 33115712 0 - 38964690 C e cebCap1.NW_016107484v1 2816858 545 + 4466143 I a score=746356.000000 s hg38.chr12_KI270834v1_alt 14076 78 + 119498 GTAAACACATA----TTTTACTGTT-GTAGAAAAATACAGTGTTAGG----AATACTTCATTTACTGTTC--GCCTCTTTTGCAAACCT s panTro5.chr12 127300209 78 + 137163284 GTAAACAAATA----TTTTACTGTT-GTAGAAAAATACAGTGTTAGG----AATACTTCATTTACTGTTC--ACCTCTTTTGCAAACCT i panTro5.chr12 I 1 C 0 s panPan2.chr12 125651171 78 + 135337776 GTAAACAAATA----TTTTACTGTT-GTAGAAAAATACAGTGTTAGG----AATACTTCATTTACTGTTC--ACCTCTTTTGCAAACCT i panPan2.chr12 I 1 C 0 s gorGor5.CYUI01015152v1 8164120 78 - 8369578 GTAAACAAATA----TTTTACTGTT-GTAGAAACATACAGTGTTAGG----AATACTTCATTTACTGTTC--GCCTCTTTTGCAAACCT i gorGor5.CYUI01015152v1 I 1 C 0 s nomLeu3.chr10 97812211 78 + 106955855 GTAAACAAATA----TTTTACTGTT-ATAGAAAAATACAGTATTAGG----AATACTTCATTTACTGTTC--GCCTCTTTTGCAAACCT i nomLeu3.chr10 I 1 C 0 s rheMac8.chr11 123934280 78 + 133663169 GTAAACAAGTC----TTTTACTGTT-ACAGAAAAATACAGTATCAGG----AATACTCCATTTACTGTTT--GTCTCTTTTGGAGACCT i rheMac8.chr11 I 1 C 0 s macFas5.chr11 128182417 78 + 137757926 GTAAACAAGTC----TTTTACTGTT-ACAGAAAAATACAGTATCAGG----AATACTCCATTTACTGTTT--GCCTCTTTTGGAGACCT i macFas5.chr11 I 1 C 0 s macNem1.NW_012010578v1 10583420 78 - 16319837 GTAAACAAGTC----TTTTACTGTT-ACAGAAAAATACAGTATCAGG----AATACTCCATTTACTGTTT--ACCTCTTTTGGAGACCT i macNem1.NW_012010578v1 I 1 C 0 s cerAty1.NW_012001186v1 12205317 78 + 20526591 GTAAACAAATC----TTTTACTGTT-ACAGAAAAATACAGTATCAGG----AATACTTCATTTACTGTTT--GCCTCTTTTGGAGACCT i cerAty1.NW_012001186v1 I 1 C 0 s chlSab2.chr11 119178239 78 + 128539186 GCAAACAAGTA----TTTTACTGTT-ACAGAAAAATACAGTATCAGG----AATACTTCATTTACTGTTT--GCCTCTTTTGGAGACCT i chlSab2.chr11 I 1 C 0 s manLeu1.NW_012103587v1 491100 78 + 6255621 GTAAACAAGTC----TTTTACTGTT-ACAGAAAAATACAGTATCAGG----AATACTTCATTTACTGTTT--GCCTCTTTTGGAGACCT i manLeu1.NW_012103587v1 I 1 C 0 s colAng1.NW_012116043v1 4554893 78 - 8658521 GTAAACAAGTA----TTTTACTGTT-ACAGAAAAATATAGTATCAGG----AATACTTCATTTACTGTTT--GCCTCTTTTGGAGACCT i colAng1.NW_012116043v1 I 1 C 0 s calJac3.chr9 114758863 81 + 124281992 GTAAACAAATAAAGATTTTACTATT-ATAGAAA-ATACAGTGTTAGG----AATACTTCATTTACTGTTC--ACCTCTTTTGCAAACCT i calJac3.chr9 C 0 I 610 s saiBol1.JH378194 403413 81 - 9212255 GTAAACAAATAAGTATTTTACTGTT-ATAGAAA-ATACCGCGTTAGG----AATACTTCATTTATTGTTC--GCCTCTTTTGCAAACCT i saiBol1.JH378194 I 308 I 308 s aotNan1.NW_018491581v1 1512665 76 + 5364348 GTAAACAAATAAA-----TACTGTT-ATAGAAA-ATACAGTGTTAGG----AATACTTCATTGACTGTTC--ACCTCTTTTGCAAACCT i aotNan1.NW_018491581v1 I 1 C 0 s otoGar3.GL873618 4246924 78 + 7922563 ---AATAGATA----TTTAACTGTTAATAGAAGAACATGGTGTTAGATCACAGTAC----TTTTCTGTTTTAGCCTCTTCCTCCAGCCT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33115712 77 - 38964690 GTAAGCAAATA----TTTCACTGCT-TTAGAAAATCAT-GTATTAGG----AGCACTTCGTTTACTGGTA--GCCCCTGGTGCAAACTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 788620 78 - 1116856 AGAAACAAATA----TTTTGCTGTT-ACAGAAAAATGTGTAGTTAGA----AGCTCTTAATTTACTGCCA--GCTCCTTTTGCAAAACT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I e cebCap1.NW_016107484v1 2816858 545 + 4466143 I a score=42449.000000 s hg38.chr12_KI270834v1_alt 14154 3 + 119498 CTG s panTro5.chr12 127300287 3 + 137163284 CTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125651249 3 + 135337776 CTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8164198 3 - 8369578 CTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97812289 3 + 106955855 CTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123934358 3 + 133663169 CTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128182495 3 + 137757926 CTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10583498 3 - 16319837 CTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12205395 3 + 20526591 CTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119178317 3 + 128539186 CTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 491178 3 + 6255621 CTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4554971 3 - 8658521 CTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114759554 3 + 124281992 cTG i calJac3.chr9 I 610 C 0 s saiBol1.JH378194 403802 3 - 9212255 cTG i saiBol1.JH378194 I 308 C 0 s aotNan1.NW_018491581v1 1512741 3 + 5364348 CTG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4247002 3 + 7922563 CTG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33115789 3 - 38964690 CTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 788698 3 - 1116856 CCG i dasNov3.JH568189 C 0 I 409 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I e cebCap1.NW_016107484v1 2816858 545 + 4466143 I a score=-2773.000000 s hg38.chr12_KI270834v1_alt 14157 1 + 119498 T s panTro5.chr12 127300290 1 + 137163284 T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125651252 1 + 135337776 T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8164201 1 - 8369578 T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97812292 1 + 106955855 T i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123934361 1 + 133663169 A i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128182498 1 + 137757926 A i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10583501 1 - 16319837 A i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12205398 1 + 20526591 A i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119178320 1 + 128539186 A i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 491181 1 + 6255621 A i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4554974 1 - 8658521 A i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114759557 1 + 124281992 A i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 403805 1 - 9212255 A i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1512744 1 + 5364348 A i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4247005 1 + 7922563 A i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33115792 1 - 38964690 G i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 789110 1 - 1116856 T i dasNov3.JH568189 I 409 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I e cebCap1.NW_016107484v1 2816858 545 + 4466143 I a score=60048.000000 s hg38.chr12_KI270834v1_alt 14158 4 + 119498 TTTT s panTro5.chr12 127300291 4 + 137163284 TTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125651253 4 + 135337776 TTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8164202 4 - 8369578 TTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97812293 4 + 106955855 TTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123934362 4 + 133663169 TTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128182499 4 + 137757926 TTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10583502 4 - 16319837 TTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12205399 4 + 20526591 TTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119178321 4 + 128539186 TTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 491182 4 + 6255621 TTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4554975 4 - 8658521 TTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114759558 4 + 124281992 TTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 403806 4 - 9212255 TTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2817403 4 + 4466143 TTTT i cebCap1.NW_016107484v1 I 545 C 0 s aotNan1.NW_018491581v1 1512745 4 + 5364348 tttt i aotNan1.NW_018491581v1 C 0 I 910 s otoGar3.GL873618 4247006 4 + 7922563 TTTC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33115793 4 - 38964690 TTTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 789111 4 - 1116856 TTTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I a score=6949558.000000 s hg38.chr12_KI270834v1_alt 14162 645 + 119498 ATTCTTTAAAGCCTGTT----TGTTGCCTTCCTCTCCTCTCTGATTTGT-GAGTGCCTTG--------TATATGGTGGG-CCCTAAAGGACTCATTGTCCTAAATGTTATTCTGATTAATAACAATGataatagtcaacaaatgccaagtg-ttta-acaacatgccagca---tttgactcagattgtttcatttgattctcccaag----cccaccttgttaagtgccatgattgtgtt-----tattccaggcagagagaggaggagcaactcacccatagttgcgcaattggatagtggggaatctgggattc-catcacaggtctctgttccccag--cctggggtg----ttaatcacCCTTCCGCCTCCTCCACGTTCCACTGGCTCCTATGTCCAGATACCTCCCCAC------------TCCAG-----CAGGGTTAGGGACAGAGTCTG----CTTTTTC-TTTCT--CTTTTCAATCCTCCACAGATCTTTGCACAGTACAGAGTAAATGAAAATCCCCAATAAGTGTCTTTGGGATGACCACACAGGTGGGTGAACGA-CATCCATCTTGCCTGCGATCTCGGCTCACCGGTTGCCATTGCTTGCATCGTGGCAGCTCTGCTGGATGGAGCACCGCTGGCTGGTCTTTGATT---CCAGAACTCCGTGCAGGTCTTACAGGGCTGCCTCTCC--CTGT s panTro5.chr12 127300295 649 + 137163284 ATTCTTTAAAGCCTGTT----TATTGCCTTCCTCTCCTCTCTGATTTGT-GAGTGCCTTG--------TATATGGTGGG-CCCTAAAGGACTCATTGTCCTAAATGTTATTCTGATTAATAACAATGATAATAGTCAACAAATGCCAAGTG-TTTA-ACAGTGTTTCagca---tttgactcagattgtttcatttgattctcccaag----cccaccttgttaagtgccatgattgtgtt-----tattccaggcagagtgaggaggagcaactcacccatagttgctcaattggatagtggggaatctgggattc-catcacaggtctCTGTTCACCAG--CCTGGGGTG----TTAATCACCCTTCCACCTCCTCCACGTTCCACTGGCTCCTATGTCCAGATACCTCCCCAC------------TCCAG-----CAGGGTTAGGGACAGAGTCTGTCTTCTTTTTC-TTTCT--CCTTTCAGTCCTCCACAGATCTTTGCACAGTACAGAGTAAATGAAAATCCCCAATAAGTGTCTTTGGGATGACCACACAGGTGGGTGAACGA-CATCCATCTTGCCTGCGATCTCGGCTCACTGGTTGCCATTGCTTGCATCGTGGCAGCTCTGCTGGATGGAGCACCGCTGGCTGGTCTTTGATT---CCAGAACTCAGTGCAGGTCTTACAGGGCTGCCTCTCC--CTGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125651257 649 + 135337776 ATTCTTTAAAGCCTGTT----TATTGCCTTCCTCTCCTCTCTGATTTGT-GAGTGCCTTG--------TATATGGTGGG-CCCTAAAGGACTCATTGTCCTAAATGTTATTCTGATTAATAACAATGATAATAGTCAACAAATGCCAAGTG-TTTA-ACAGTGTTTCagca---tttgactcagattgtttcatttgattctcccaag----cccaccttgttaagtgccatgattgtgtt-----tattccaggcagagtgaggaggagcaactcacccatagttgctcaattggatagtggggaatctgggattc-catcacaggtctCTGTTCACCAG--CCTGGGGTG----TTAATCACCCTTCCACCTCCTCCACGTTCCACTGGCTCCTATGTCCAGATACCTCCCCAC------------TCCAG-----CAGGGTTAGGGACAGAGTCTGTCTTCTTTTTC-TTTCT--CCTTTCAGTCCTCCACAGATCTTTGCACAGTACAGAGTAAATGAAAATCCCCAATAAGTGTCTTTGGGATGACCACACAGGTGGGTGAACGA-CATCCATCTTGCCTGCGATCTCGGCTCACTGGTTGCCATTGCTTGCATCGTGGCAGCTCTGCTGGATGGAGCACCGCTGGCTGGTCTTTGATT---CCAGAACTCAGTGCAGGTCTTACAGGGCTGCCTCTCC--CTGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8164206 631 - 8369578 ATTCTTTAAAGCCTGTT----TGTTGCCTTCCTCTCCTCTCTGATTTGT-GAGTGCCTTG--------TATATGGTGGG-CCCTAAAGGACTCATTGTCCTAAATGTTATTCTGATTAATAACAATGATAATAGTC-------------------A-Acagtgtttcagca---tttgactcagattgtttcatttgattctcccaag----cccaccttgttaagtgccatgattgtgtt-----tattccaggcagagagaggaggagcaaatcacccatagttgctcaattggatagtggggaacctgggattc-catcacaggtctctgttccccag--tctggggtg----ttaatcacCCTTCCGCCTCCTCCACGTTCCACTGGCTCCTATGTCCAGATACCTCCCCAc------------tccag-----cagggttagggacagagtctgtcttctttttc-tttct--cttttcaatcctccacagatctttgcacagtacagagtaaatgaaaatccccagtaagtgtctttgggatgaCCACACAGGTGGGTGAACGA-CATCCATCTTGCCTGCGATCTCGGCTCACCGGTTGCCATTGCTTGCATCGTGGCAGCTCTGCTGGATGGAGCACCGCTGGCTGGTCTTTGATT---CCAGAACTCAGTGCAGGTCTTACAGGGCCGCCTCTCC--CTGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97812297 651 + 106955855 ATTCTTTAAAGCCTGTT----TGTTGCCTTCCTCTCCTCTCTGATTTGT-GAGTGCCTTG---T--ATTATATGGTGGG-CCCTAAAGGACCCATTGTCTTAAATGTTATTCTGATGAATAACAATGataatagtcaacaaatgccaagtg-ttta-acagtgtgccagca---tttgactcagattgtttcatttgattctcccaag----cccaccttgttaagtgccatgattgtgtt-----tattccaggcagagagaggaggagcaactcacccatagttgctcaattggatagtggggaagctgggattc-caccacaggtctctgttccccag--cctggggtg----ttaatcacCC-TCCGCCTCCTCCACGTTCCACTGGCTCCTATGTCCAGATACCTCCCCAc------------tccag-----gagggttagggacagagtctgtcttctttctc-tttct--cttttcagtcctccacagatctttgcacagtacagagtaaatgaaagtccccaataagtgtctttcggatgaCCACACAGGTGGGTGAACGA-CATCCATCTCGCCTGCGATCTTGGCTCACTGGTTGCCATTGCTTGCATCGTGGCAGCTCTGCTGGATGGAGCACCGCTGGCTGATCTTTGATT---CCAGAACTCAGTGCAGGTCTTACAGGGCTGCCTCTCC--CTGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123934366 656 + 133663169 ATTTTTTAAAGTCTGTT----TGTTGCCTTCCTCTCCTCTCTGATTTGC-AAGTGCCTTG---T--ATTATATGGTGGG-CCCTAAAGGACCCATTGTCCTAAATGTTATTCTGATtaataacaatgataatagtcagcaaatgccacgtg-ttta-acagtgtgctggca---ttcgacttacattgtttcatttgattctcccaag----cccaccttggtaaatgccatgattatgtt-----tattccaggcagagagaggaggagcaactcacccatagttgctcaactggatagtggggaagctgggattc-caccacaggcctctgttccccag--cctggggtgttaattaATCACCCTTCCGCCTCCTCCACATTCCACTGGCTCCTATGTCCAGATATCTCCCCAT------------TCCAG-----Cagggttagggacagagtctgtcttctttttc-tttct--attttcaatcctccacagatctttgcacagtgcagagtaaatgaaagtccccagtaagtgtctttcggatgaCCACACAGGTGGGTGAGTGA-CATCCATCTTGCCTGTGATCTCGGCTCAATGGTTGCCATTGCTTGCATCGTGGCAGCTCTGCTGGATGAAGCACTGCTGGCTGGTCTTTGATT---CCAGAACTCAGTGCAGGTCTTACAGGGCCGCCTCTCC--CTGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128182503 656 + 137757926 ATTTTTTAAAGTCTGTT----TGTTGCCTTCCTCTCCTCTCTGATTTGC-AAGTGCCTTG---T--ATTATATGGTGGG-CCCTAAAGGACCCATTGTCCTAAATGTTATTCTGATtaataacaatgataatagtcagcaaatgccatgtg-ttta-acagtgtgctggca---ttcgacttacattgtttcatttgattctcccaag----cccaccttggtaaatgccataattatgtt-----tattccaggcagagagaggaggagcaactcacccatagttgctcaactggatagtggggaagctgggattc-caccacaggcctctgttccccag--cctggggtgttaattaatcacccttccgcctccTCCACATTCCACTGGCTCCTATGTCCAGGTATCTCCCCAT------------TCCAG-----Cagggttagggacagagtctgtcttctttttc-tttct--attttcaatcctccacagatctttgcacagtgcagagtaaatgaaagtccccagtaagtgtctttcggatgaCCACACAGGTGGGTGAGTGA-CATCCATCTTGCCTGTGATCTCGGCTCAATGGTTGCCATTGCTTGCATCGTGGCAGCTCTGCTGGATGAAGCACTGCTGGCTGGTCTTTGATT---CCAGAACTCAGTGCAGGTCTTACAGGGCCGCCTCTCC--CTGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10583506 656 - 16319837 ATTTTTTAAAGTCTGTT----TGTTGCCTTCCTCTCCTCTCTGATTTGC-AAGTGCCTTG---T--ATTATATGGTGGG-CCCTAAAGGACCCATTGTCCTAAATGTTATTCTGATTAATAACAATGATAATAGTCAGCAAAtgccacgtg-ttta-acagtgtgctggca---ttcgacttacattgtttcatttgattctcccaag----cccaccttggtaaatgccatgattatgtt-----tattccaggcagagagaggaggagcaactcacccatagttgctcaactggatagtggggaagctgggattc-caccacaggcctctgttccccag--cctggggtgttaattaATCACCCTTCCGCCTCCTCCACATTCCACTGGCTCCTATGTCCAGATATCTCCCCAT------------TCCAG-----Cagggttagggacagagtctgtcttctttttc-tttct--attttcaatcctccacagatctttgcacagtgcagagtaaatgaaagtccccagtaagtgtctttcggatgaCCACACAGGTGGGTGAGTGA-CATCCATCTTGCCTGTGATCTCGGCTCAATGGTTGCCATTGCTTGCATCGTGGCAGCTCTGCTGGATGAAGCACTGCTGGCTGGTCTTTGATT---CCAGAACTCAGTGCAGGTCTTACAGGGCCGCCTCTCC--CTGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12205403 653 + 20526591 ATTTTTTAAAGTCTGTT----TGTTGCCTTCCTCTCCTCTCTGATTTGC-GAGTGCCTTG---T--ATTATATGGTGGG-CCTTAAAGGACCCATTGTCCTAAATGTTATTCTGATTAATAACAATGATAATAGTCAGCAAATGCTACGTGTTTTA-Acagtgtgctggca---ttcgactcacattgtttcatttgattctcccaag----cccaccttggtaaatgccatgattatgtt-----tattccaggcagagagaggaggagcaactcacccatagttgctcaactggttagtggggaagctgggattc-caccacaggcctctgttccccag--cctgaggtg----ttaatcacCCTTCCGCCTCCTCCACGTTCCACTGGCTCCTATGTCCAGATATCTCCCCAT------------TCCAG-----CAGGGTTAGGGACAGAGTCTGTCTTCTTTTTC-TTTCT--ATTTTCAATCCTCCACAGATCTTTGCACAGTGCAGAGTAAATGAAAGTCTCCAGTAAGTGTCTTTCGGATGACCACACAGGTGGGTGAGCGA-CATCCATCTTGCCTGTGATCTCGGCTCAATGGTTGCCATTGCTTGCATCGTGGCAGCTCTGCTGGATGAAGCACTGCTGGCTGGTCTTTGATT---CCAGAACTCAGTGCAGGTCTTACAGGGCCGCCTCTCC--CTGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119178325 652 + 128539186 ATTCTTTAAAGTCTGTT----TGTTGCCTTCCTCTCCTCTCTGATTTGC-GAGTGCCTTG---T--ATTATATGGTGGG-CCCTAAAAGACCCATTGTCCTAAATGTTATTCTGATtaataacaatgataatagtcagcaaatgccacgtg-ttta-acagtgtgctggca---ttcgactcacattgtttcatttgattctcccaag----cccaccttggtaagtgccatgattatgtt-----tattccaggcagagaaaggaggagcaactcacccatagttgctcaactggatagtggggaagctgggattc-caccacaggcctctgttccccag--cctggggtg----ttaatcacCCTTCTGCCTTTTCCACGTTCCACTGGCTCCTATGTCCAGATATCTCCCCAT------------TCCAG-----CAGGGTTAGGGACAGAGTCTGTCTTCTTTTTC-TTTCT--ATTTTCAATCCTCCACAGATCTTTGCACAGTGCAGAGTGAATGAAAGTCCCCAATAAGTGTCTTTCAGATGACCACACAGGTGGGTGAACGA-CATCCGTCTTGCCTGTGATCTCGGCTCAATGGTTGCCATTGCTTGCATCGTGGCAGCTCTGCTGGATGAAGCACTGCTGGCTGGTCTTTGATT---CCAGAACTCAGTGCAGGTCTTACAGGGCCGCCTCTCC--CTGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 491186 652 + 6255621 ATTTTTTAAAGTCTGTT----TGTTGCCTTCCTCTCCTCTCTGATTTGC-AAGTGCCTTG---T--ATTATATGGTGGG-CCCTAAAGGACCCATTGTCCTAAATGTTATTCTGATTAATAACAATGATAATAGTCAGCAAAtgccacgtg-ttta-acagtgtgctggca---ttcgactcacattgtttcatttgattctcccaag----cccaccttggtaaatgccatgatcatgtt-----tattccaggcagagagaggaggagcaactcacccatagttgctcaactggatagtggggaagctgggattc-caccacaggcctctgttccccag--cctggggtg----ttaatcacCCTTCCACCTCCCCCACATTCCACTGGCTCCTATGTCCAGATATCTCCCCAT------------TCCAG-----Cagggttagggacagagtctgtcttctttttc-tttct--attttcaatcctccacagatctttgcacagtgcagagtaaatgaaagtccccagtaaatgtctttcggatgaCCACACAGGTGGGTGAGCGA-CATCCATCTTGCCTGTGATCTCGGCTCAATGGTTGCCATTGCTTGCATCGTGGCAGCTCTGCTGGATGAAGCACTGCTGGCTGGTCTTTGATT---CCAGAACTCAGTGCAGGTCTTACAGGGCCGCCTCTCC--CGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4554979 652 - 8658521 ATTCTTTAAAGTCTGTT----TGTTGCCTTCCTCTCCTCTCTGATTTGC-GAGTGCCTTG---T--ATTATATGGTGGG-CCCTAAAGGACCCATTGTCCTAAATGTTATTCTAATTAATAACAATGataataatcagcaaatgccacgtg-ttta-acagtgtgctggca---ttcaactcacattgtttcatctgattctcccaag----cccaccttggtaagtgccgtgattatgtt-----tattccaggcagagagaggaggagcaactcacccacagttgctcaactggatagtggggaagctgggattc-caccacaggcctctgttccccag--cctggggtg----ttaatcacCCTTCCGCCTCCTCCACGTTCCACTGGCTCCTATGTCCAGATATCTCCCCAc------------tccag-----cagggttagggacagagtctgtcttctttttc-tttct--gttttcaatcctccacagatctttggacagtgcagagtaaatgaaagtccccaataagtgtctttcggatgaGCACACAGGTGGGTGAACGA-CATCCATCTTGCCTGTGATCTCGGCTCAATGGTTGCCATTGCTTTCATTGTGGCAGCTCTGCTGGATGAAGCACTGCTGGCTGGTCTTTGATT---CCAGAACTCAGTGCAGGTCTTACAGGGCCGCCTCTCC--CTGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114759562 648 + 124281992 ATTCTTTAAAGCCTATT----TGCTGCCTTCCTCTCCTCTCTGATTTGC-GAGTGCCTTG---T--ACTATATGGTGGG-CCCTAAAGGAGCTATTTTCCTAAATATTATTCTGATTCCTAACAATGataatagtcaacaaatgccaagtg-ttta-acaatgtgccagcc---atttcctcagattgcttcatttgattctcccagg----cccgccgtgttcagtgccataattatgtt-----tattccaggcagagagaggaggagcaattcacccccagttgctggattggatagtggggaagctgggattc-caccacaggtctctgttccccag--cctggggtg----ttaatcacCCTTCCGCCTCCTCCACGTTCCACTGGCTCC--TGTCTAGATACTGCCGCAT------------TCCAG-----CAGTGTTAGGGACTGAGTCTGGCTGCTGCTTC-TTTCT---TTTTCAGTCCTCTACAGGTCTTTGCACAGTGCAGAGTAAATGAAAGTGCCCAGTAAATGTCTTTCGGATGACCACACAGGTGGATGAACAA-CATCTGTCTTGTTTGTGATCTTGGCTCACCTGTTGCCGTTGCTGGCATCATGGCAGCTCTGATGGATGGAGGCCCGCCGGCTGGTCTTTGATT---CCAGAACTCGGTGACGGTCTTACAGGGCC-CCTCTCC--CTGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 403810 649 - 9212255 ATTCTTTAAAGCCTGTT----TGTTGTCTTCCTCTCCTCTCTGATTTGC-GAGTGCCTTG---T--TCTATATGGTGGG-CCGTAAAGGACCCGTTTTCCTAAATATTATTCTGATTCATAACAATGatgatagtcaacaaatgccaagtg-ttta-acaatgtgccagca---attgactcagattgtttcatttgattgtcccaag----cccaccttgttaagtgccgtgattatgtt-----aattccaggcagagagaggaggagcaactcacccctagttgctggattggacattggggaagctgggattt-cgccacaggtctctgttccccag--cctggggtg----ttaatcacCCTTCCGTCTCCCCCACGTTCCGCTGGCTCC--TGTCTAGATAGCTCCCCGT------------TCCAG-----CAGTGTTAGGGACAGAGTCTGGCTGCTGCTGC-TTTCT---TTTTCAGTCTTCCACAGATCCTTGCACAGAACGGAGTAAATGAAAGTGCCCAGTAAATGTCTTTCAGATGGCCACACACGGGGATGGACAA-CATCTGTCTTGCCTGTGATCTCAGCTCACCTGTTGCTGTTGCTGGCATCATGGCAGCTCTGATGGATGGAGGACCGCTGGCTGGTCTTTGATT---CCAGAACTCAGTGACGGTCTTATGGGGTCGCCTCTCC--CTGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2817407 648 + 4466143 ATTCTTTAAAGCCTCTT----TGTTGCCTTCCTCTCCTCTCTGATTTGC-GAGTGCCTTG---T--TCTATATGGTGGG-CCCCAAATGACCCGTTTTCCTAAATATTATTCTGATTCATAACAATGataatggtcaacaaatgccaagtg-ttta-acaatgtgccagca---atttacttagattgtttcatttgactgctccaag-----ccaccttgttaagtgccatgattatgtt-----tattccgggcagagagaggaggagcaacccacccctagttgctggattggacattggggaagctgggattc-caccacaggtctctgttccccag--cctggggtg----ttaatcacCCTTCCGCCTCCCCCACGTTCCACTGGCTCC--TGTCTAGATACCTCCCCAT------------CCCAG-----CAGTGTTAGAGACAGAGTCTGGCTGCTGCTTC-TTTCT---TTTTCAGTCTTCCACAGATCTTTGCACGGTACAGAGTAAATGAAAGTGCCCAATAAATGTCTTTCGGATGACCATGCAGGTGGCTGAACAA-CATCTGTCTTGCCTGTGATCTTGGCGCACCTGTTGCTGTTGCTGGCATCATCGCAGCTCTGATGGATGGAGGACCACCGGCTGGTCTTTGATT---CCAGAACTCAGTGACGGTCTTACAGGGCCGCCTCTCC--CTGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1513659 648 + 5364348 ATTCTTTAAAGCCTGTT----TGTTGCCTTCCTCTCCTCTCTGATTTGC-GAGTGCCTTG---T--ACTATATGGTGGG-CCCTAGAGGACCCATTTTCCTAAATATTATTCTGATTCATAACATTGataatagtcaacaaatgccaagtg-ttta-acaatgtgccagca---atttactcggattgtttcatttgattctcccagg----cccaccttgttaagtgccatgattatgtt-----tattccaggcagagagaggaggagcaactcacccctagttgctggattggacagcggggaagctggggttg-caccacaggtctctgttccccag---ctggggtg----ttactcacccttctgcctcctcCACGTTCCACTGGCTCC--TGTCTAGATACTGCCCCAT------------TCCAG-----CAGTGTTAGGGACAGAGTCTGGCTGCTGCTGC-TTtct---ttttcagtcctccacagatctttgcacagtgcagagtaaatgaaaatgcccaataaCTGTCTTTCGGATGACCACACAGGTGGATGAACGA-CATCCGTCTTGCCTGTGATCTCGGCTCACTTGTTGCCATTGATGGCATCATGGCAGCTCTGATGGATGGAGGACTGCCGGCTGGTCTTTGATT---CCAGAACTCAGTGACGGTCTTACAGGACCGCCTCTCC--CTGT i aotNan1.NW_018491581v1 I 910 C 0 s otoGar3.GL873618 4247010 573 + 7922563 ATTCT------------------------------------CATTTTCA-GGGTGCCTGGTATT--ATTATGTCATGGG-CCCCA-AGGGCTCACTTTCATAAATATTTTTCTGATTAGTAACAATGATGTTCGTCAACAAATGCCAAATG-TT----CAATATACCAGC--------------------------------CTCAAC----CCCATCTTGG-AAATGCCACGGTTCTGTT-----TATTCTAGGCTGAGAGAGGAGAAGCAGTGCACCTCGAGTTG-TCTGTTAGACAGCAGGGTGTCTGGGGCTC-CACCACAGACTCCAGTTCCCCAG--TGTGT--------TTTGTTACCCTTCTTCCTCTTTCACGGTCCGCTGGTATATACGTTTAGATTTCTCCCCAT------------CTCAG-----GAGTGTTA------GAGTCTGTCTTCTTTTTCATTTCT--TCTTTTAACTCACCACAGATCC-TGCACAGCGCAGGATAAATGAAAGTACCAAATGCGTGTCTTCTGCATA--TAAGCAGCTGGGCGAACGAGCATCTATTCATTGTGCGATCCCAGCGGGCCCCTTGCTGTTGCTTGCATCCTGGCAGCTCT----GACAGAGCACTGCAGGCTGGCCTTTGATT----CACAGCTCAGTGAAGGG-TCACAGGGTCACTTCTGCTGCTGT i otoGar3.GL873618 C 0 I 1 s canFam3.chr26 33115797 582 - 38964690 CTCCTTGGAAGCCTGT--------TGCCTTCGCCT--TCTCTGACTTGCAGAGTGCTTTG---T--CTTCTATCCTGGG-TCCTAAAAGACTCATTTTTCTGAGTATCATCCTGATGAATAACAGAAACGATGGGC----------ATGTG-TTTG-CCA---TGCCAGCGACCTTTCCCACACGGTGTCTGCTTTGACCCTCCCAAC----CTCTTCTTG-TAAGTGCTGTAATTATGTC-----TGATCCAGGATGAGAGAAGAGAAGCAGCTTGCCCCAGGTCACCTGGTTGGGACGTGGGGGGCTTCAAGTGCACATCTAACTCCTCTGCCC--------CTGGGGTG----TTGA----------ATCTCACCGCCGGTCTG-TGTCTCCTGGGTCCAGATACCTCTCCATAGCCGCATACGCTCCAGAATCTCAAGTGTAGGGAGGGAGCATATCTTCTTTTCC-TTCCTTCCTTTTGAACCCCAAACAGACGTTTATGCACTGCGGA-TAGACGCAAGCAGCCACTGTGTGTC-------------------------------CCTGTTTCGTGC-TGTGTCCCTG---------------------------TGGCTCCTGTGTGTGACAGAGCGCTGGCCACAGGCCCTTCTGTGGGCCACTATCCTGTGTTG---TCACAGGGTGGACTGTCCCACTGT i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 789115 554 - 1116856 ATCCCTTAAAGTCTGTTGTCCTTCTCTCTTCCTCTCTTC-CTGACTTGC--AGTACCCTC---TCCTTCATATTGTGGTCCCCTGCCAGACTCATTTTCCCGAATGTCATTCTCATTAATAACAGTGATGA-GGCCAACTAATGCCAAGTG-TTAATATTCTGTGCCagcc---tttcacatgcattgtctcattccatccccacaccagtccccatcttg-caggtgccataattgtgttcatgctgtgccttgctgagaggagagaaacaaactgccc--ggttact-aattggaccatgaggaagctgggattc-aaacatagcttgctaatttccaagctctagggt-----ttagtcact--------------------------------gggcta-------------------------tcctg-----C------------------------CTTTTTC-TTTTT--CTC---------------ATCCTTGCACAGTGCAGGGTAAATGAAAGTACCCGATAAATGTTTTTTGGGTGAACAGACAGTTGCTCACATGAACATCTGTTTAGTGTGTGACTTCCGCTGGCCTGTCACTGT------------------TCTGCTGG----GGCACCACAGGCTGCCCTTCGACC---CCAGACCACAG----AGTCCTCCAGGCTCGCTTCTCC--CTCT i dasNov3.JH568189 C 0 I 3 e micMur3.chr21 9426474 741 - 31815103 I e mm10.chr5 124773622 111 + 151834684 I e proCoq1.NW_012154285v1 6680028 370 - 9870158 I a score=4404620.000000 s hg38.chr12_KI270834v1_alt 14807 237 + 119498 TT-GCAGATGTACGACAACATAGCATCACTGAGGTTTAATGACGGCGATAGTGGAGAAAAACTGGTGTCCGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGTTTCGGAAGATCTTGCGGGCTGAAGGGCGCGTGGAGGACTGGATGACGGCAGTTTTGAATGAGATGAGAAGAACTAATAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAGGTAAGGC s panTro5.chr12 127300944 238 + 137163284 TTTGCAGATGTACGACAACATAGCATCACTGAGGTTTAACGACGGCGATAGTGGAGAAAAACTGGTGTCCGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGTTTCGGAAGATCGTGCGGGCTGAAGGGCGCGTGGAGGACTGGATGACGGCAGTTTTGAATGAGATGAGAAGAACTAATAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAGGTAAGGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125651906 238 + 135337776 TTTGCAGATGTACGACAACATAGCATCACTGAGGTTTAATGACGGCGATAGTGGAGAAAAACTGGTGTCCGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGTTTCGGAAGATCGTGCGGGCTGAAGGGCGCGTGGAGGACTGGATGACGGCAGTTTTGAATGAGATGAGAAGAACTAATAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAGGTAAGGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8164837 238 - 8369578 TTTGCAGATGTACGACAACATAGCATCACTGAGGTTTAATGACGGCGATAGTGGAGAAAATCTGGTGTCCGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGTTTCGGAAGATCGTGCGGGCTGAAGGGCGCGTGGAGGACTGGATGACGGCAGTTTTGAATGAGATGAGAAGAACTAATAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAGGTAAGGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97812948 238 + 106955855 TTTGCAGATGTACGACAACATAGCATCACTGAGGTTTAATGACGGCGATAGTGGAGAAAAACTGGTGTCCGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGTTTCGGAAGATCGTGCGGGCCGAAGGGCGCGTGGAGGACTGGATGACAGCAGTTTTGAATGAAATGAGAAGAACTAATAGACTAATTACCAAAGAGGCAATTTTTAGATACTGTGAAGACAGAAGCAGGCAAGGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123935022 238 + 133663169 TTTGCAGATGTACGACAACATAGCATCGCTGCGGTTTAACGACGGCGATAGTGGAGAAAAACTGGTGTCCGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGCTTCGGAAGATCGTGCGGGCCGAAGGGCGCGTGGAGGACTGGATGACGGCAGTTTTGAATGAAATGAGAAGAACTAACAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAGGCAAGTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128183159 238 + 137757926 TTTGCAGATGTACGACAACATAGCATCGCTGCGGTTTAACGACGGCGATAGTGGAGAAAAACTGGTGTCCGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGCTTCGGAAGATCGTGCGGGCCGAAGGGCGCGTGGAGGACTGGATGACGGCAGTTTTGAATGAAATGAGAAGAACTAACAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAGGCAAGTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10584162 238 - 16319837 TTTGCAGATGTACGACAACATAGCATCGCTGCGGTTTAACGACGGCGATAGTGGAGAAAAACTGGTGTCCGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGCTTCGGAAGATCGTGCGGGCCGAAGGGCGCGTGGAGGACTGGATGACGGCAGTTTTGAATGAAATGAGAAGAACTAACAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAGGCAAGTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12206056 238 + 20526591 TTTGCAGATGTACGACAACATAGCATTGCTGCGGTTTAACGATGGCGATAGTGGAGAAAAACTGGTGTCCGCGATGATTTCAGCGGAAGGAGAAGTCATGGAGCTTCGGAAGATCGTGCGGGCCGAAGGGCGCGTGGAGGACTGGATGACGGCAGTTTTGAATGAAATGAGAAGAACTAATAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAGGCAAGTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119178977 238 + 128539186 TTTACAGATGTACGACAACATAGCATCGCTGCGGTTTAACGACGGCGATAGTGGAGAAAAACTGGTGTCCGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGCTTCGGAAGATCGTGCGGGCCGAAGGGCGCGTAGAGGACTGGATGACGGCAGTTTTGAATGAAATGAGAAGAACTAATAGACTAATTACTAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAGGCAAGTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 491838 238 + 6255621 TTTGCAGATGTACGACAACATAGCATCGCTGCGGTTTAACGACGGCGATAGTGGAGAAAAACTGGTGTCCGCGATGATTTCAGCGGAAGGAGAAGTCATGGAGCTGCGGAAGATCGTGCGGGCCGAAGGGCGCGTGGAGGACTGGATGACGGCAGTTTTGAATGAAATGAGAAGAACTAATAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAGGCAAGTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4555631 238 - 8658521 TTTGCAGATGTACGACAACGTAGCATCGCTGAGGTTTAACGACGGCGATAGTGGAGAAAAACTGGTGTCCGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGTTTCGGAAGATCGTGCGGGCCGAAGGGCGCGTGGAGGACTGGATGACGGCAGTTTTGAATGAAATGAGAAGAACTAATAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAGGCAAGTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114760210 238 + 124281992 TCTGCAGATGTACGACAACATAGCATCGCTGAGGTTTCATGACAGCGACAGTGGAGAGAAACTGGTGTCTGCAATGATTTCAGCAGAAGGAGAAGTCATGGAGTTTCGGAAGATCGTGCGCGCCGAAGGACGCGTGGAGGACTGGATGACCGCAGTTTTGAATGAAATGAGACGAACTAATAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAGGACAGAAGCAGGTAAGGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 404459 238 - 9212255 TTTGCAGATGTACGACAACATAGCATCGCTGAGGTTTCATGACGGCGATAGTGGAGAGAAACTGGTGTCTGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGTTTCGGAAGATCGTGCGGGCTGAAGGGCGTGTGGAGGATTGGATGACGGCAGTTTTGAATGAAATGAGACGAACTAATAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAGGACAGAAGCAGGTAAGAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2818055 238 + 4466143 TTTGCAGATGTACGACAACATAGCATCGCTGAGGTTTCATGACGGCGATAGTGGAGAGAAACTGGTGTCTGCCATGATTTCAGCAGAAGGAGAAGTCATGGAGTTTCGGAAGATCGTGCGGGCTGAAGGGCGCGTGGAGGACTGGATGACGGCAGTTTTGAATGAAATGAGACGAACTAATAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAGGACAGAAGCAGGTAAGCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1514307 238 + 5364348 TTTGCAGATGTACGACAACATAGCATCGCTGAGGTTTCATGACGGCGACAGTGGAGAGAAACTGGTGTCTGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGTTTCGGAAGATTGTGCGGGCCGAAGGGCGCGTGGAGGACTGGATGACGGCAGTTTTGAATGAAATGAGACGAACTAATAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAGGACAGAAGCAGGTAAGGC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9427215 237 - 31815103 -TTGCAGATGTACGACAACATCGCCTCGCTGAGGTTCCACGACGGGGACAGCGGGGAGAAGCTGGTGTCGGCGATGATCTCAGCGGAAGGCGAAGTCATGGAGTTCCGGAAGATCATCCGGGCTGAGGGCCGGGTGGAGGACTGGATGACGGCCGTGCTGAACGAGATGAGGAGGACCAACCGACTCATCACCAAGGAGGCGATTTTCAGATACTGCGAGGACAGAAGCAGGTGAGGC i micMur3.chr21 I 741 I 536 s proCoq1.NW_012154285v1 6680398 237 - 9870158 -TTGCAGATGTACGACAACATAGCGTCGCTGCGGTTTAACGACGGGGACAGCGGGGAGAAACTGGCGTCGGCGATGATTTCGGCGGAAGGCGAAGTCATGGAGTTTCGGAAGGTCATCCGGGCCGAAGGGCGGGTGGAGGACTGGATGACGGCGGTGCTGAACGAGATGAGAAGGACCAACAGACTCATCACCAAGGAGGCCATTTTCAGATACTGCGAGGACAGAAGCCGGTAAGGC i proCoq1.NW_012154285v1 I 370 C 0 s otoGar3.GL873618 4247584 237 + 7922563 -TTACAGATGTTTGACAACATAGCCTCGCTGAGGTTTAATGACGGGGACAGTGGAGAAAAACTGGTGTCAGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGTTTCGGAAGATTATCCGGGCCGAAGGGCGCGTAGAGGACTGGATGACAGCAGTTTTGAATGAAATGAGAAGGACTAATAGACTCATCACCAAAGAGGCTATTTTCAGATACTGTGAGGACAGAAGCAGGTAAGGT i otoGar3.GL873618 I 1 I 2 s mm10.chr5 124773733 237 + 151834684 -TTGCAGATGTATGATAACATAGCCATGCTGCGCTTCCACGATGGGGACAGCGGGGAGAAGCTCGTGTCGGCCATGATCTCGGCAGAGGGAGAAGTCATGACCTTCCGCAAGATCATCCGGGCCGATGGCCGTGTGGAAGACTGGATGACCGCGGTGCTACACGAAATGAGGAGGACCAACAGGCTCATCACCAAGGAAGCCATCTTCAGATACTGTGAAGACAGAAGCAGGTGATAA i mm10.chr5 I 111 C 0 s canFam3.chr26 33116380 237 - 38964690 -TTGCAGATGTATGACAACATAGCTCTGCTGAGGTTTAACGACGGTGAGAATGGAGAGAAGCTGGTGTCTGCCATGATTTCAGCAGAAGGGGAAGTCATGGAGTTCCGCAAGATCATCCGGGCTGAGGGGCGTGTGGAGGACTGGATGACGGCCGTTTTGAACGAGATGCGGAGGACCAACCGGCTGATCACCAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAGGTAGGGT i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 789672 237 - 1116856 -TTGCAGATGTATGACAACATAGCGGCACTGAGGCTCAATGACGGGGAGAGTGGAGAAAAGCTCGTGTCAGCCATGATTTCAGCAGAAGGAGAAGTCATGGAATTTCGGAAGATAATCCGGGCGGAAGGGCGTGTGGAGGACTGGATGACGGCAGTTTTGAATGAAATGAGAAGAACAAACAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAGGTACGGT i dasNov3.JH568189 I 3 C 0 a score=49995.000000 s hg38.chr12_KI270834v1_alt 15044 5 + 119498 TGCGA s panTro5.chr12 127301182 5 + 137163284 TGCGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125652144 5 + 135337776 TGCGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8165075 5 - 8369578 TGCGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97813186 5 + 106955855 TGTGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123935260 5 + 133663169 TGTGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128183397 5 + 137757926 TGTGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10584400 5 - 16319837 TGTGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12206294 5 + 20526591 TGTGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119179215 5 + 128539186 TGTGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 492076 5 + 6255621 TGTGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4555869 5 - 8658521 AGTGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114760448 5 + 124281992 TGTGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 404697 5 - 9212255 TGTGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2818293 5 + 4466143 TGTGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1514545 5 + 5364348 TGTGA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6680635 5 - 9870158 CGCGA i proCoq1.NW_012154285v1 C 0 I 877 s otoGar3.GL873618 4247823 3 + 7922563 TGC-- i otoGar3.GL873618 I 2 C 0 s mm10.chr5 124773970 3 + 151834684 --CGG i mm10.chr5 C 0 I 2 s canFam3.chr26 33116617 5 - 38964690 GGCGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 789909 5 - 1116856 CATAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I a score=173864.000000 s hg38.chr12_KI270834v1_alt 15049 14 + 119498 ATGTGGACATGCAT s panTro5.chr12 127301187 14 + 137163284 ATGTGGACATGCAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125652149 14 + 135337776 ATGTGGACATGCAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8165080 14 - 8369578 ATGTGGACATGCAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97813191 14 + 106955855 ATGTGGACGTGCAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123935265 14 + 133663169 ATGTGAACGTGCAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128183402 14 + 137757926 ATGTGAACGTGCAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10584405 14 - 16319837 ATGTGAACGTGCAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12206299 14 + 20526591 ATGTGAACGTGCAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119179220 14 + 128539186 ATGTGAACGTGCAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 492081 14 + 6255621 ATGTGAACGTGCAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4555874 14 - 8658521 ATATGAACGTGCAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114760453 14 + 124281992 ATGTGGATGTGCAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 404702 14 - 9212255 ATGTGGATGTGCAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2818298 14 + 4466143 ATGTGGATGTGCAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1514550 14 + 5364348 ATGCGGATGTGCAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4247826 14 + 7922563 ATGTGAGCATTGGC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124773975 14 + 151834684 ATGCGAGGGTGTAT i mm10.chr5 I 2 I 868 s canFam3.chr26 33116622 14 - 38964690 ATGTGAACACGTGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 789914 14 - 1116856 ATGTGACCATGTGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I a score=1051815.000000 s hg38.chr12_KI270834v1_alt 15063 94 + 119498 TGCTCTATCCAA-T-------------------TCATAGTCATAATGGATTAATTTTAAAGGCTTGGAGTAGATTGGCTGACATTCCAAATGAGGTTTTG-TTTTTTTGCAATAG s panTro5.chr12 127301201 94 + 137163284 TGCTCTATCCAA-T-------------------TCATAGTCATAATGGATTAATTTTAAAGGCTTGGAGTAGATTGGCTGACATTCCAAATGAGGTTTTG-TTTTTTTGCAATAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125652163 94 + 135337776 TGCTCTATCCAA-T-------------------TCATAGTCATAATGGATTAATTTTAAAGGCTTGGAGTAGATTGGCTGACATTCCAAATGAGGTTTTG-TTTTTTTGCAATAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8165094 94 - 8369578 TGCTCTATCCAA-T-------------------TCATAGTCATAATGGATTAATTTTAAAGGCTTGGAGTAGATTGGCTGACATTCCAAATGAGGTTTTG-TTTTTTTGCAATAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97813205 95 + 106955855 TGCTCTATCCAG-T-------------------TCATAGTCATAATGGATTAATTTTAAAGGCTTGGAGTAGATTGGCTGACATTCCAAATGAGGTTTTGTTTTTTTTGCAATAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123935279 94 + 133663169 TGCTCTATCCTA-T-------------------TCATAGTCATAATGGATTAATTTTAAGGGCTTGGAGTAGATTGACTGACATTCCAAATGAGGTTTTA-TTATTTTGCAATAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128183416 94 + 137757926 TGCTCTATCCTA-T-------------------TCATAGTCATAATGGATTAATTTTAAGGGCTTGGAGTAGATTGACTGACATTCCAAATGAGGTTTTA-TTATTTTGCAATAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10584419 90 - 16319837 TGCTCTATCCTA-T-------------------TCATAGTCATAATGGATTAATTTTAAGGGCTTGGAGTAGAT----TGACATTCCAAATGAGGTTTTA-TTATTTCGCAATAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12206313 94 + 20526591 TGCTCTATCCTA-T-------------------TCATAGTCGTAATGGATTAATTTTAAGGGCTTGGAGTAGATTGACTGACATTCCAAATGAGGTTTTA-TTATTTTGCAATAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119179234 94 + 128539186 TGCTCTATCCTA-T-------------------TCATAGTCATAATGGATTAATTTTAAAGGCTTGGAGTAGATTGACTGACATTCCAAATGAGGTTTTA-TTATTTTGCAATAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 492095 94 + 6255621 TGCTCTATCCTA-T-------------------TCATAGTCGTAATGGATTAATTTTAAGGGCTTGGAGTAGATTGACTGACATTCCAAATGAGGTTTTA-TTATTTTGCAATAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4555888 94 - 8658521 TGCTCTATCCCA-T-------------------TCGTAGTCATAATGGATTAATTTTAAGGGCTTGGAGTAGATTGACTGACATTCCAAATGAGGTTTTA-TTATTTTGCAATAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114760467 94 + 124281992 TGGTCTATCCTACT-------------------TCATAGTCACAATGGTTTAATTTTAAGGGCTTGGAGTAGAGTGACCAACCTTCTAAATGAGA-TTTA-TGTTTTTGGAATAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 404716 94 - 9212255 TGGTCTATCCTACT-------------------TCATAGTCACAGTGGATTCATTTTAAGGGCTTGGAGTAGAGTGACTGACATTCTAAATGAGA-TTTA-TGTTTTTGGAATAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2818312 94 + 4466143 TGGTCTGTCCTACT-------------------TCATAGTCACAGTGGATTCATTTTAAGTGCTTGGAGTAGAGTGACTGACATTCTAAATGAGA-TTTA-TGTTTTTGGAATAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1514564 94 + 5364348 TGGTCTATCCTAGT-------------------TCACAGTCACAGTGGATTCATTTTAAGGGCTTGGAGTAGAGTGACTGGCATTCTAAATGAGA-TTTA-TGTTTTCGGAATAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4247840 91 + 7922563 TATTCTATCCTA-C-------------------TAATGGACAGAATGGATTAATTTTAAGACTTTGG---AGATCAGCTGAGATTCCAAAGGGAGTTTTT-TCCCCTTACAGTAG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33116636 113 - 38964690 CACTGTATCATA-TCATGTATGACATCATATCATCATAGTCATGATGGGTTAATATTAAGGGCTTGGAATAGATCAAATGACATTCCGAATGAAGTTTTC-TTTTCTTGCAATAG i canFam3.chr26 C 0 I 99 s dasNov3.JH568189 789928 90 - 1116856 TACTTTACCGTA-T-------------------CAGTAGTCAAAATGGATTAATTTTAAGGGTTTTGGGTAGAT----TGACATTTCAAATGAGGTTTTC-TTTTCTATCAGTAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I a score=310538.000000 s hg38.chr12_KI270834v1_alt 15157 28 + 119498 -GTCATTAGTGGACAGATAGATGTC------------ttta s panTro5.chr12 127301295 28 + 137163284 -GTCATTAGTGGACAGATAGATGTC------------ttta i panTro5.chr12 C 0 C 0 s panPan2.chr12 125652257 28 + 135337776 -GTCATTAGTGGACAGATAGATGTC------------ttta i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8165188 28 - 8369578 -GTCATTAGTAGACAGATAGATGTC------------ttta i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97813300 28 + 106955855 -GTCATTAGCGGACAGATAGATGTC------------ttta i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123935373 28 + 133663169 -GTAATTAGTGGACAGATAGATGTC------------ttta i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128183510 28 + 137757926 -GTAATTAGTGGACAGATAGATGTC------------ttta i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10584509 28 - 16319837 -GTAATTAGTGGACAGATAGATGTC------------ttta i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12206407 28 + 20526591 -GTAATTAGTGGACAGATAGATGTC------------ttta i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119179328 28 + 128539186 -GTAATTAGTGGACAGATAGATGTC------------ttta i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 492189 28 + 6255621 -GTAATTAGTGGACAGATAGATGTC------------ttta i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4555982 28 - 8658521 -GTAATTAGTGGACAGATAGATGTC------------ttta i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114760561 40 + 124281992 -GTAATTAGTGGACAGATAGATGTCttgattgattgattga i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 404810 28 - 9212255 -GTAATTAGCAGACAGATAGATGTC------------TTTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2818406 28 + 4466143 -GTAATTAGCGGACAGATAGATGTC------------TTGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1514658 28 + 5364348 -GTAATTAGCGGACAGATAGATGTC------------ttga i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4247931 28 + 7922563 -CTAACTAGCCAACATATAGCTGTC------------TTTA i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 790018 29 - 1116856 CTACATTAGTTGACATAAATCTGTC------------TTTA i dasNov3.JH568189 C 0 I 1966 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e canFam3.chr26 33116749 99 - 38964690 I a score=22352.000000 s hg38.chr12_KI270834v1_alt 15185 2 + 119498 -----tt s panTro5.chr12 127301323 2 + 137163284 -----tt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125652285 2 + 135337776 -----tt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8165216 2 - 8369578 -----tt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97813328 2 + 106955855 -----tt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123935401 2 + 133663169 -----tt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128183538 2 + 137757926 -----tt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10584537 2 - 16319837 -----tt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12206435 2 + 20526591 -----tt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119179356 2 + 128539186 -----tt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 492217 2 + 6255621 -----tt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4556010 2 - 8658521 -----tt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114760601 2 + 124281992 -----tt i calJac3.chr9 C 0 I 2 s saiBol1.JH378194 404838 2 - 9212255 -----TT i saiBol1.JH378194 C 0 I 2 s cebCap1.NW_016107484v1 2818434 2 + 4466143 -----TT i cebCap1.NW_016107484v1 C 0 I 2 s aotNan1.NW_018491581v1 1514686 2 + 5364348 -----tt i aotNan1.NW_018491581v1 C 0 I 18 s otoGar3.GL873618 4247959 7 + 7922563 AGAATTT i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33116749 99 - 38964690 I a score=47404.000000 s hg38.chr12_KI270834v1_alt 15187 9 + 119498 tttattttt s panTro5.chr12 127301325 9 + 137163284 tttattttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125652287 9 + 135337776 tttattttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8165218 9 - 8369578 tttattttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97813330 9 + 106955855 tttattttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123935403 9 + 133663169 tttattttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128183540 9 + 137757926 tttattttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10584539 9 - 16319837 tttattttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12206437 9 + 20526591 tttattttc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119179358 9 + 128539186 tttattttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 492219 9 + 6255621 tttattttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4556012 9 - 8658521 tttattttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114760605 8 + 124281992 ttgattga- i calJac3.chr9 I 2 C 0 s saiBol1.JH378194 404842 8 - 9212255 TTCATTGG- i saiBol1.JH378194 I 2 C 0 s cebCap1.NW_016107484v1 2818438 8 + 4466143 TTGATTGA- i cebCap1.NW_016107484v1 I 2 C 0 s otoGar3.GL873618 4247966 9 + 7922563 TTTTTCTTT i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33116749 99 - 38964690 I e aotNan1.NW_018491581v1 1514688 18 + 5364348 I a score=471895.000000 s hg38.chr12_KI270834v1_alt 15196 48 + 119498 ttgagacaggatcttgctctgtcacccaggctggaatacagtggtaca s panTro5.chr12 127301334 48 + 137163284 ttgagacaggatcttgctctgtcacccaggctggaatacagtggtaca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125652296 48 + 135337776 ttgagacaggatcttgctctgtcacccaggctggaatacagtggtaca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8165227 48 - 8369578 ttgagacaggatcttgctctgtcacccaggctggaatacagtggtaca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97813339 48 + 106955855 ttgagacagggtcttgctctgttacccaggctggagtacagtggtaca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123935412 48 + 133663169 ttgagacagggtcttgctctgtcacccaggctggagtgaagtggcaca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128183549 48 + 137757926 ttgagacagggtcttgctctgtcacccaggctggagtgaagtggcaca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10584548 48 - 16319837 ttgagacagggtcttgctctgtcacccaggctggagtgaagtggcaca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12206446 48 + 20526591 ttgagacagggtcttgttctgtcacccaggctggagtgaagtggcaca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119179367 48 + 128539186 ttgagacagggtcttgctctgtcacccaggctggagtaaagtggcaca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 492228 48 + 6255621 ttgagacagggtcttgctctgtcacccaggctggagtgaagtggcaca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4556021 48 - 8658521 ttgagacagggtcttgctctgtcacccaggctggagtaaagtggcaca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114760613 48 + 124281992 ttgaGGcagggtcttgctctgtcgcccaggctggaataccgtgatcca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 404850 48 - 9212255 ttgagacagggtctcgctctgttgcccaggctggagtacagtggcaca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2818446 48 + 4466143 ttgagacagggtctcgctctgttgcccaggctggggtacagtggcaca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1514706 48 + 5364348 ttgaggcagggccttgctctgtcgcccaggctggagtacagtggcaca i aotNan1.NW_018491581v1 I 18 C 0 s otoGar3.GL873618 4247975 29 + 7922563 ATGAAATCATAACT-------------------GTGTACATTGATGCA i otoGar3.GL873618 C 0 I 54 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33116749 99 - 38964690 I a score=763138.000000 s hg38.chr12_KI270834v1_alt 15244 74 + 119498 atggctcactgcagccttgacctccctggttcaagagattctcccacctcagtcttcagtgtagctgggactac s panTro5.chr12 127301382 74 + 137163284 atggctcactgcagccttgacctccctggttcaagagattctcccacctcagtcttcagtgtagctgggactac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125652344 74 + 135337776 atggctcactgcagccttgacctccctggttcaagagattctcccacctcagtcttcagtgtagctgggactac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8165275 74 - 8369578 atggctcactgcagccttgacctccctggttcaagagagtctcccacctcagtcttcagtgtagctgggactac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97813387 74 + 106955855 atggctcactgcagccttgacctccctggttcaagagattctcccacctcagccttcagtgtagctgggactac i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123935460 74 + 133663169 atggctcactgcagccttgacctcccgggttcaagagatcctcccacctcagccttcagtgtagctgggactac i rheMac8.chr11 C 0 I 3 s macFas5.chr11 128183597 74 + 137757926 atggctcactgcagccttgacctcccgggttcaagagatcctcccacctcagccttcagtgtagctgggactac i macFas5.chr11 C 0 I 3 s macNem1.NW_012010578v1 10584596 74 - 16319837 atggctcactgcagccttgacctcctgggttcaagagatcctcccacctcagccttcagtgtagctgggactac i macNem1.NW_012010578v1 C 0 I 3 s cerAty1.NW_012001186v1 12206494 74 + 20526591 atggctcactgcagccttgacctcccgggttcaagagatcctcccacctcagccttcagtgtagctgggactac i cerAty1.NW_012001186v1 C 0 I 3 s chlSab2.chr11 119179415 74 + 128539186 atggctcactgcagccttgacctcctgggttcaagagatcctcccacctcagccttcagtgtagctgggactac i chlSab2.chr11 C 0 I 3 s manLeu1.NW_012103587v1 492276 74 + 6255621 atggctcactgcagccttgacctcccgggttcaagagatcctcccacctcagccttcagtgtagctgggactac i manLeu1.NW_012103587v1 C 0 I 3 s colAng1.NW_012116043v1 4556069 74 - 8658521 atggctcactgcagctttgacctcccgggttcaagagatcctcccacctcagccttccgtgtagctgggactac i colAng1.NW_012116043v1 C 0 I 35 s calJac3.chr9 114760661 74 + 124281992 atgattcactgtggccttgatctcccgggttcaagagatcctcccaccagagccttcagtgtagctgggactac i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 404898 74 - 9212255 atgattcactgcagccttgatctcccaggttcaagagaccctcccacctgagccttcagtgtagctgggactac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2818494 74 + 4466143 atgattcactgcagccttgatctcccgggttgaagagatcctcccacctgagccttcattgtggctgggactac i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1514754 74 + 5364348 atgattcattacagccttgatctcccgggttcaagagatcctcccacctgagccttcaatgtagctgggactac i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33116749 99 - 38964690 I e otoGar3.GL873618 4248004 54 + 7922563 I a score=1526827.000000 s hg38.chr12_KI270834v1_alt 15318 206 + 119498 agttgtgcactaccatgcctggctaattttgtacttttttgtagagagggagtctcactgtgttgcccaggttggtctcaaactcctgggctcaagtgatcctcc--caccttggcctcccaaagtgctgggattacaggtgtgagccactgagcccgg--------GCAGTCtttagcatatgtgctgccaaagcgagcacAAGATAGCAGTCTT s panTro5.chr12 127301456 206 + 137163284 agttgtgcactaccatgcctggctaattttgtacttttttgtagagagggagtctcactgtgttgcccaggttggtctcaaactcctgggctcaagtgatcctcc--caccttggcctcccaaagtgctgggattacaggtgtgagccactgagcccgg--------GCAGTCtttagtatatgtgctgcccaagcgagcacAAGATAGCAGTCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125652418 206 + 135337776 agttgtgcactaccatgcctggctaattttgtacttttttgtagagagggagtctcactgtgttgcccaggttggtctcaaactcctgggctcaagtgatcctcc--caccttggcctcccaaagtgctgggattacaggtgtgagccactgagcccgg--------GCAGTCtttagtatatgtgctgcccaagcgagcacAAGATAGCAGTCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8165349 206 - 8369578 agttgtgcactaccatgcctggctaattttgtacttttttgtagagagggagtctcactgtgttgcccaggttggtctcaaactcctgggctcaagggatcctcc--caccttggcctcccaaagtgctgggattacaggtgtgagccactgagcccgg--------GCAGTCtttagcatatgtgctgccgaagcaagcacAAAATAGCAGTCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97813461 206 + 106955855 agttgtgtactaccatgcctggcgaattttgtacttttttgtagagaaggagtctcactgtgttgcccaggctggtctcaaactcctgggctcaagtgatcctcc--caccttggcctcctgaagtgctgggattacaggtgtgagccgctgagcctgg--------GCAGTCtttagtataggtgctgccgaagcgagcacAAGACAGCAGTCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123935537 214 + 133663169 gcatgggaattaccacgcctggctaattttgtacttttttgtagagagggagtctcactgtgtcgcccaggctggtctcaaactcctaggctcaagtgatcctcc--caccttggcctcccgaattgctgggattacaggtatgaaccactgcacctggGCAAGCTAGCAGTCtttagtatatgtgctgccgaagcgagcTCAAGATAGCAGTCTT i rheMac8.chr11 I 3 C 0 s macFas5.chr11 128183674 214 + 137757926 gcatgggaattaccacgcctggctaattttgtacttttttgtagagagggagtctcactgtgtcgcccaggctggtctcaaactcctgggctcaagtgatcctcc--caacttggcctcccgaagtgctgggattacaggtatgaaccactgcacctggGCAAGCTAGCAGTCtttagtatatgtgctgccgaagcgagcTCAAGATAGCAGTCTT i macFas5.chr11 I 3 C 0 s macNem1.NW_012010578v1 10584673 214 - 16319837 gcatgggaattaccacgcctggctaattttgtacttttttgtagagagggagtctcactgtgtcgcccaggctggtctcaaactcctgggctcaagtgatcctcc--caccttggcctcccgaagtgctgggattacaggtatgaaccactgcacctggGCAAGCTAGCAGTCtttagtatatgtgctgccgaagcgagcTCAAGATAGCAGTCTT i macNem1.NW_012010578v1 I 3 C 0 s cerAty1.NW_012001186v1 12206571 214 + 20526591 gcatgggaattaccacacctggctaattttgtacttttttgtagagagggagtctcactgtgtcgcccaggctggtctcaaactcctgggctcaagtgatcctcc--caccttggcctcccgaagtgctgggattacaggtgtgagccactgcacccggGCAAGCTAGCAGTCtttagtatatgtgctgccaaagcaagcTCAAGATAGCAGTCTT i cerAty1.NW_012001186v1 I 3 C 0 s chlSab2.chr11 119179492 214 + 128539186 gcatgggaattaccacgcctggctaattttgtacttttttgtagagagggagtctcactgtgtcgcccaggctggtctcaaactcctgggctcaagtgatcctcc--caccttggcctcccgaagtgctgggattacaggtgtgagccactgcacccggGCAAGCTAGCAGTCtttagtatatgtgctgccaaagcgagcTCAAGATAGCAGTCTT i chlSab2.chr11 I 3 C 0 s manLeu1.NW_012103587v1 492353 214 + 6255621 gcatgggaattaccacacctggctaattttgtacttttttgtagagagggagtctcactgtgttgcccaggctggtctcaaactcctgggctcaagtgatcctcc--caccttggcctcccgaagtgctgggattacaggtgtgagccactgcacccggGCAAGCTAGCAGTCtttagtatatgtgctgccaaagcgagcTCAAGATAGCAGTCTT i manLeu1.NW_012103587v1 I 3 C 0 s calJac3.chr9 114760735 171 + 124281992 agttctgtgctaccataactggctaactttgtacttttttatagagatggaatctcactgtgttacccagtctggtctcaaactcctgggctcaagtgatcttcc--caccttggtttcctaaagtgctgggattagaggtgtcagccaccgcacctgg-----------------------------------------GCAAGATAGCAG--TT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 404972 175 - 9212255 agttgtatgctaccgtacctggctaattttgtacttttttgtagagatggaatatcactgtgttacccaggctggtctcaaactcctgggctcaagcgatccccccacaccttggtttcctaaagtgttgggattagaggcgtcagccaccacacctgg-----------------------------------------GCAAGATGGCAGTCTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2818568 173 + 4466143 agttgtgtgctaccatacctggctaattttgtacttttttgtggagatggaatctcactgtgttacccaggctggtctcaaactcctgggctcaagtgatccccc--caccttggtttcctacagtgctgggattagaggcgtcagccaccgcacctgg-----------------------------------------GCAAGATAGCAGTCTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1514828 173 + 5364348 agttgtgtgctaccatacctggctaattttgtacttttttgtagagatggaatctcactgtgatacccaggctggtctcaaactcctgggctcaagtgatccccc--gaccttggtttcctaaagtgctgggattagaggcgtcagccactgcgcctgg-----------------------------------------GCAAGGTAGCAGTCTT i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33116749 99 - 38964690 I e otoGar3.GL873618 4248004 54 + 7922563 I e colAng1.NW_012116043v1 4556143 35 - 8658521 I a score=409067.000000 s hg38.chr12_KI270834v1_alt 15524 61 + 119498 TCAATGATCACCCGATGCAGTACtctcaaagtgtgccccct-ggtggcagcacagggcccct s panTro5.chr12 127301662 61 + 137163284 TCAATGATCACCCGATGCAGTACtctcaaggtgtgccccct-ggtggcagcacagggcccct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125652624 61 + 135337776 TCAATGATCACCCGATGCAGTACtctcaaagtgtgccccct-ggtggcagcacagggcccct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8165555 61 - 8369578 TCAATGATCACCCGATGCAGTACtctcaaagtgtgccccct-ggtggcagcacagggcccct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97813667 61 + 106955855 TAAGTGATCACCCCATGCAGTACtcccaaagtgtgccccct-ggtggcagcacagggcccct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123935751 61 + 133663169 CAAATGATCACACCGAGCAGTACtctgaaagtgtgccccct-ggtggcagcacagggcccct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128183888 61 + 137757926 CAAATGATCACACCGAGCAGTACtctgaaagtgtgccccct-ggtggcagcacagggcccct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10584887 62 - 16319837 CAAATGATCACACCGAGCAGTACtctgaaagtgtgccccctgggtggcagcacagggcccct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12206785 41 + 20526591 CAAATGATCACACCGAGCAGTACTCTGAAAGTGTGCCCCCT--------------------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119179706 61 + 128539186 CAAATGATCACACCGAGCAGTACtctgaaagtgtgccccct-ggtggcagcacagggcccct i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 492567 41 + 6255621 CAAATGATCACACCGAGCAGTAGTCTGAAAGTGTGC---------------------CCCCT i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114760906 60 + 124281992 TACATGATCACCCCGT-CAGTACtctcaaagtgtgctccct-aatggcagcacagggcccct i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 405147 61 - 9212255 TACATGAGCACCACGTGCAGTACtctcaaagtgtgctccct-gatggcagcacagggcacct i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2818741 61 + 4466143 TACATGATCACCCCGTGCAGTACtctcaaagtgtgctccct-gatggcagcacagggcccct i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1515001 61 + 5364348 TACGTGATCACCCCATGCAGTACtctcaaagtgtgctccct-gatggcagcacagggcccct i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4248058 39 + 7922563 TTGATGATTGCCAAGTGCAG----------ATGTGTTTcct-gacagctg------------ i otoGar3.GL873618 I 54 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33116749 99 - 38964690 I e colAng1.NW_012116043v1 4556143 35 - 8658521 I a score=2153423.000000 s hg38.chr12_KI270834v1_alt 15585 237 + 119498 gggattgttagaaatgctgattcttgggtcttaccctgcacctgcc-catcag-aactctgggggtggggcctgaggatttgtgt-ttttgcaag---ctctcaggggattcccagcaccctt-agcgtgtgaacccctgACTTAGTGAACCACCAGAAACTAGGCGTTTAGTG-GGATTA---TGTGT----ATGTAACGTTGTTTCTAAAATATTTACTGAATTTCCA----ACATTCTTTGATTTTTGTGGCT s panTro5.chr12 127301723 237 + 137163284 gggattgttagaaatgctgattcttgggtcttaccctgcacctgcc-catcag-aactctgggggtggggcctgaggatttgtgt-ttttgcaag---ctctcaggggattcccagcaccctt-agcgtgtgaacccctgACTTAGTGAACCACCAGAAACTAGGCGTTTAGTG-GGATTA---TGTGT----ATGTAACGTTGTTTCTAAAATATTTACTGAATTTCCA----ACATTCTTTGATTTTTGTGGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125652685 237 + 135337776 gggattgttagaaatgctgattcttgggtcttaccctgcacctgcc-catcag-aactctgcgggtggggcctgaggatttgtgt-ttttgcaag---ctctcaggggattcccagcaccctt-agcgtgtgaacccctgACTTAGTGAACCACCAGAAACTAGGCGTTTAGTG-GGATTA---TGTGT----GTGTAACGTTGTTTCTAAAATATTTACTGAATTTCCA----ACATTCTTTGATTTTTGTGGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8165616 237 - 8369578 gggattgttagaaatgctgattcttgggtcttaccctgcacctgcc-catcag-aactctgggggtgggacctgaggatttgtgt-ttttgcaag---ctctcaggggattcccagcaccctt-agcgtgtgaacccctgACTTAGTGAACCACCAGAAACTAGGCGTTTAGTG-GGATTA---TGTGT----ATGTAACGTTGTTTCTAAAATATTTACTGAATTTCCA----ACATTCTTTGATTTTTGTGGCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97813728 237 + 106955855 gggattgttagaaatgctgattcttgggtcttaccctgcacctgcc-catcag-aactctgggggtggggcctgaggatttgtgt-ttttgcaag---ctctcaggggatccccagcggcctt-agcgtgtgaaccgctgACTTAGTGAACCACCAGAAACTAGGTGTTTAGTA-GGATTA---TGTGT----ATGTAACGTTGTTTCTAAAATATTTACTGCATTTCCA----TCATTCTTTGATTTTTGTGGCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123935812 236 + 133663169 gcgactgttagaaatgctgattcttgggtcttagcctgcacctgtg-catcag-acctctgggggtggggcctgaggagttgtgt-ttttgcaag---ctcccaggggattcccagcaccctt-agcatgtgacccgctgACTTAGTGAACCACCAGAAACGAGGTGTTTAGTA-GGATTA---TGTGT----ATGTAAC---GTTTCTAAAATATTTACTGAATTTCTATT--GCATAGAAAGATTTTTGTGGCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128183949 236 + 137757926 gcgactgttagaaatgctgattcttgggtcttagcctgcacctgtg-catcag-acctctgggggtggggcctgaggagttgtgt-ttttgcaag---ctcccaggggattcccagcaccctt-agcatgtgacccgctgACTTAGTGAACCACCAGAAACGAGGTGTTTAGTA-GGATTA---TGTGT----ATGTAAC---GTTTCTAAAATATTTACTGAATTTCTACT--GCATAGAAAGATTTTTGTGGCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10584949 236 - 16319837 gcgactgttagaaatgctgattcttgggtcttagcctgcacctgtg-catcag-acctctaggggtggggcctgaggagttgtgt-ttttgcaag---ctcccaggggattcCCAGCACCCTT-AGCATGTGACCCGCTGACTTAGTGAACCACCAGAAACGAGGTGTTTAGTA-GGATTA---TGTGT----ATGTAAC---GTTTCTAAAATATTTACTGAATTTCTACT--GCATAGAAAGATTTTTGTGGCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12206826 236 + 20526591 GCGACtgttagaagtgctgactcttgggtcttagcctgcacctgtg-catcag-aactctgggggtggggcctgaggagttgtgt-ttttgcaag---ctcccaggggattcCCAGCACCCTT-AGCATGTGACCCGCTGACTTAGTGAACCACCAGAAACGAGGTGTTTAGTA-GGATTA---TGTGT----ATGTAAC---GTTTCTAAAATATTTACTGAATTTCTACT--GCATAGAAAGATTTTTGTGGCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119179767 239 + 128539186 gcgattgttagaaatgctgattcttgggtcttagcctgtgcctgtg-catcag-aactctgggggtggggcctgaggagttgtgt-ttttgcaag---ctcccaggggattcccagcaccctt-agcgtgtgacccgctgACTTAGTGAACCACCAGAAACGAGATGTTTAGTA-GGATTA---TGTGT----ACGTAACGTTGTTTCTAAAATATTTACTGAATTTCTACT--GCATAGAAAGATTTTTGTGGCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 492608 236 + 6255621 GCGACtgttagaaatgctgactcttgggtcttagcctgcacctgtg-catcag-aactctgggggtggggcctgaggagttgtgt-ttttgcaag---ctcccaggggattcCCAGCACCCTT-AGCATGTGACCCGCTGACTTAGTGAACCACCAGAAACGAGGTGTTTAATA-GGATTA---TGTGT----ATGTAAC---GTTTCTAAAATATTTACTGAATTTCTACT--GCATAAAAAGATTTTTGTGGCT i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114760966 236 + 124281992 gggattgttagaaatgctgattcttgggtctta-cccacacctgcc-catcag-aactctgggggtggggcctggagatttgtgt-ttttgcaag---ctctcaggagattcccagcacctgt-ggcgtgcgaaccactgACTTAGTGAACCGCCAGAAGCTAGGTGTTTAGTA-GGATTA---TGTGT----ATGTAATGTCGTTTCTAAAATATTTACTGAGTTTCAA----TCATTCTTTGATTTTTGTGGCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 405208 236 - 9212255 ggggttgttagaaatgctgattcttgggtcttaccccacacctgcc-catcag-cactctgggggtggggcctgaggatttgtgt-ttttgcaag---ctctcagaagattcccagcaccctt-agcatgcgaaccactgACTTAGTGAACCACCAGAAGCTACGTGTTTAGTA--GATTA---TGTGT----ATGTAATGTTGTTTCTGAAATATTTACTGAGTTTCAA----TCATTCTTTGATTTTTGTGGCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2818802 237 + 4466143 gggattgttagaaatgctgattcttgggtcttagcccacacctgcc-catcag-aactctgggggtggggcctgaggatttgtgt-ttttgcaag---ctctcagaagattcccagcaccctt-agcatgtgaaccactgACTTAGCGAACCACCAGAAGCTATGTGTTTAGTA-GGATTA---TGTGT----ATGTAACGTTGTTTCTAAAATATTTACTGAGTTTCAA----TCATTCTTTGATTTTTGTGGCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1515062 237 + 5364348 gggattgttagaaatgctgattcttgggtcttaccccacacctgcc-catcag-aactctgggggtggggcctgaggatttgtgt-ttttgcaag---ctctcaggagatttccagcaccctt-agcgtgcgaaccactgACTTAGTGAACCACCAGAAGCTACGTGTTTAATA-GGATTA---TGTGT----GTGTAACGTTGTTTCTAAAATACTTACTGAGTTTCAG----TCATCCTTTGATTTTTGTGGCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4248097 186 + 7922563 ------gttagaaatgcaaattcctgggctctaccctacacctgct-cctcag-tac-----------------------------ttctgagag---CCCTCCAGGGA----------------------GAACCACTGATTTAATGAGGCAGCTGTAACCAGGTGTTTAGGATTGATTA---TGTGT----ATATAAAGTTG-TCCTAAAATATTTGATGAATGTTAATTAATTATTCCTTGACTTTTGTGGCC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33116848 245 - 38964690 gggcttgttagaaatccagatgcctgggccctcccccaaacctgcctcaccagaaactctgggggtggggct-----gcccatgtattttataagcccctccccagggattctgagtacactcaagtgtgagagccactgACCTGGTGACTGGACAAGAACCAGGTGTTCAGGA-GGGTTAATCTGTGTTAAGGAGTAGAGTTGTTTCTAAAATATTTAGCGA-TCTCAA----TCACACCTTGATTTTTGTGGCC i canFam3.chr26 I 99 I 172 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e colAng1.NW_012116043v1 4556143 35 - 8658521 I a score=2319702.000000 s hg38.chr12_KI270834v1_alt 15822 246 + 119498 AGAGAGG-------------------------------------------------------------------CTTCAGGATATCATGCTGAGCC--CTGCCTGCTCCTAGCAGCT--GA----------------------------------GTGCAGTCCAACTAGAAATACAGAAAGCCTCTTTGGCTAACTTATTCTATTAGATT-AGACAGGATCCCCCGTAAAGTTGGAGAATATTTGGCAGGGCCTTCGTGCAGACATAGAATCTTTCTTGTTATTATGAGA-ACACCATTCTCTTGATTTTGTACACTGCCTTTTTGATTTTAC-AAAGTGAAAACATCTACTT s panTro5.chr12 127301960 246 + 137163284 AGAGAGG-------------------------------------------------------------------CTTCAGGATATCATGCTGAGCC--CTGCCTGCTCCTAGCAGCT--GA----------------------------------GTGCAGTCCAACTAGAAATACAGAAAGCCTCTTTGGCTAACTTATTCTATTAGATT-AGACAGGATCCCCCGTAAAGTTGGAGAATATTTGGCAGGGCCTTCGTGCAGACATAGAATCTTTCTTGTTATCATGAGA-ACACCATCCTCTTGATTTTGTACACTGCCTTTTTGATTTTAC-AAAGTGAAAACATCTACTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125652922 246 + 135337776 AGAGAGG-------------------------------------------------------------------CTTCAGGATATCATGCTGAGCC--CTGCCTGCTCCTAGCAGCT--GA----------------------------------GTGCAGTCCAACTAGAAATACAGAAAGCCTCTTTGGCTAACTTATTCTATTAGATT-AGACAGGATCCCCCGTAAAGTTGGAGAATATTTGGCAGGGCCTTCGTGCAGACATAGAATCTTTCTTGTTATTATGAGA-ACACCATCCTCTTGATTTTGTACACTGCCTTTTTGATTTTAC-AAAGTGAAAACATCTACTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8165853 246 - 8369578 AGAGAGG-------------------------------------------------------------------CTTCAGGATATCATGCTGAGCC--CTGCCTGCTCCTAGCAGCT--GA----------------------------------GTGCAGTCCAACTAGAAATACAGAAAGCCTCTTTGGCTAACTTATTCTATTAGATT-AGACAGGATCCCCCGTAAAGTTAGAGAATATTTGGCAGGGCCTTCGTGCAGACATAGAATCTTTCCTGTTATTATGAGA-ACACCATCCTCTTGATTTTGTACACTGCCTTTTTGATTTTAC-AAAGTGAAAACATCTACTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97813965 247 + 106955855 AGAGAGG-------------------------------------------------------------------CTTCAGGATAGCATGCTGAGCC--CTGCCTACTCCTAGCAGCT--GA----------------------------------GTGCAGTCCAACTAGAAATACAGAAAGCCTCTTTGGCTAACTTGTTCTGTTAGATTGAGGCAGGATCACTCGTAAAGTTGGAGAATATTTGGCAGGGCCTTGATACAGACATAAAATCTTTCTTGTTATTATGAGA-ATACCATCCTCTTGATTTTGTACACTGCCTTTTTGATTTTAC-AAAGTGAAAATATCTACTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123936048 247 + 133663169 AAAGAGG-------------------------------------------------------------------CTTCAGGATATCATGCTGAGCC--CTGCCTGCTCCTAGCAGCT--GA----------------------------------GTGCAGTTCAACTAGAAATACAGAAAGCCTCTTTGGCTAACTTGTTCTGTTAGATTGAGACAGGATCCCCCTTAAAGTTGGAGTGTATTTGGCAGGGCCTTGATGCAGACATAAAATCTTCCTTGTTATTATGAGA-ACACCATCCTCTTGATTTTGCACACTGCCTTTTTGATTTTGC-AAAATGCAAACATCTACAT i rheMac8.chr11 C 0 I 303 s macFas5.chr11 128184185 247 + 137757926 AAAGAGG-------------------------------------------------------------------CTTCAGGATATCATGCTGAGCC--CTGCCTGCTCCTAGCAGCT--GA----------------------------------GTGCAGTTCAACTAGAAATACAGAAAGCCTCTTTGGCTAACTTGTTCTGTTAGATTGAGACAGGATCCCCCTTAAAGTTGGAGTGTATTTGGCAGGGCCTTGATGCAGACATAAAATCTTCCTTGTTATTATGAGA-ACACCATCCTCTTGATTTTGCACACTGCCTTTTTGATTTTGC-AAAATGCAAACATCTACTT i macFas5.chr11 C 0 I 303 s macNem1.NW_012010578v1 10585185 247 - 16319837 AAAGAGG-------------------------------------------------------------------CTTCAGGATATCATGCTGAGCC--CTGCCTGCTCCTAGCAGCT--GA----------------------------------GTGCAGTTCAACTAGAAATACAGAAAGCCTCTTTGGCTAACTTGTTCTGTTAGATTGAGACAGGATCCCCCTTAAAGTTGGAGTGTATTTGGCAGGGCCTTGATGCAGACATAAAATCTTCCTTGTTATTATGAGA-ACACCATCCTCTTGATTTTGCACACTGCCTTTTTGATTTTGC-AAAATGCAAACATCTACTT i macNem1.NW_012010578v1 C 0 I 1 s cerAty1.NW_012001186v1 12207062 247 + 20526591 AAAGAGG-------------------------------------------------------------------CTTCAGGATATCATGCTGAGCC--CTGCCTGCTCCTAGCAGCT--GA----------------------------------GTGCGGTTCAACTAGAAATACAGAAAGCCTCTTCGGCTAACTTGTTCTGTTAGATTGAGACAGGATCCCCCTTAAAGTTGGAGTGTATTTGGCAGGGCCTTGATGCAGACATAAAATCTTCCTTGTCATTATGAGA-ACACCATCCTCTTGATTTTGTACACTGCCTTTTTGATTTTGC-AAAATGCAAACATCTACTT i cerAty1.NW_012001186v1 C 0 I 1 s chlSab2.chr11 119180006 247 + 128539186 AGAGAGG-------------------------------------------------------------------CTTCAGGATATCATGCTGAGCC--CTGCCTGCTGCTAGCAGCT--GA----------------------------------GTGCAGTTCAACTAGAAATACAGAAAGCCTCTTTGGCTAACTTGTTCTGTTAGATTGAGACAGGATCCCCCTTAAAGTTGGAGTATATTTGGCAGGGCCTTGATGCAGACATAAAATCTTCCTTGTTATTATGAGA-ACACCATCCTCTTGATTTTGTACACTGCCTTTTTGATTTTGC-AAAATGCAAACATCTACTT i chlSab2.chr11 C 0 I 1 s manLeu1.NW_012103587v1 492844 247 + 6255621 AAAGAGG-------------------------------------------------------------------CTTCAGGATATCATGCTGAGCC--CTGCCTGCTCCTAGCAGCT--GA----------------------------------GTGCAGTTCAACTAGAAATACAGAAAGCCTCTTTGGCTAACTTGTTCTGTTAGATTGAGACAGGATCCCCCTTAAAGTTGGACTGTATTTGGCAGGGCCTTGATGCAGACATAAAATCTTCCTTGTTATTATGAGA-ACACCATCCTCTTGATTTTGTACACTGCCTTTTTGATTTTGC-AAAATGCAAACATCTACTT i manLeu1.NW_012103587v1 C 0 I 1 s calJac3.chr9 114761202 247 + 124281992 AGAGAGG-------------------------------------------------------------------CTTCAGGATATCGTGCTGAGCC--CTGCCTGCTCCTAGCGGCT--GA----------------------------------GTGCAGTCCAGCTGGAAATCCAGAAAGACTCTTTGGCTAACTTGTTCTATTAGACAGAGGCAGGATCTCCCATAAAGTTGGAGTCTATTTGGCAGGGCCTTGATGCAGACATAAAGCCTTTCCTGTTATTATGAGA-ACACCATCCTCTTGATTTTGTACACTGCCTTTTTAAATTTGC-AAAGTGAAAACATCTACTT i calJac3.chr9 C 0 I 4 s saiBol1.JH378194 405444 239 - 9212255 AGAGAGG-------------------------------------------------------------------CTTCAGGATATCATGCTGAGCC--TTGCCTGCTCCTAGCAGCT--GA----------------------------------GTGCAGTCCAACTGGA-------AAAGACTC--TGGCTAACTTGTCCTATTAGATTGAGGCAGGATCCCCCATGAAGTTGGAGTATATTTGGCAGGGCCTTAATATAGACATAAAATCTTTCTTGCTATTATGAGA-ACACCATCCTCTTGATTTTGTACACTGCCTTTTTTAATTTGCAAAAGTGAAAATATCTACTT i saiBol1.JH378194 C 0 I 4 s cebCap1.NW_016107484v1 2819039 238 + 4466143 AGAGAGG-------------------------------------------------------------------CTTCAGGATATCATGCTGAGCC--CGGCCTGCTCCTAACAGCT--GA----------------------------------GTGCAGTCCAACTGGA-------GAAGACTC--TGGCTAACTTGTCCTATTAGATTGAGGCAGGATCCCCCATGAAGTTGGAGTATATTTGGCAGGGCCTTAATATAGACATAAAATCTTTCTTGTTATTATGAGA-ACACCATCCTCTTGATTTTGTACACTGCCTTTTTTAATTTGC-AGAGCGAAAACATCTACTT i cebCap1.NW_016107484v1 C 0 I 4 s aotNan1.NW_018491581v1 1515299 238 + 5364348 AGAGAGG-------------------------------------------------------------------CTTCAGGATATCATGCTGAGCC--CTGCCTGCTCCTAGCAGCT--GA----------------------------------GTGCAGTCCAACTGGA-------AAAGACTC--TGGCTAACTTGTTCTATTAGATTGAGGCAGGATCCCCCATGAAGTTGGTGTATATTTGGCAGGGCCTTGATACAGACGTAAAGTCTTTCTTGTTATTATGAGA-ACACCATCCTTTTGATTTCGTATACTGCCTTTTTTAATTTGC-AAAGTGGACACATCTACTT i aotNan1.NW_018491581v1 C 0 I 4 s otoGar3.GL873618 4248283 224 + 7922563 ---------------------------------------------------------------------------------ATACCCTGT--AGCC--ATGCCTGCTCCTAGCAAATGAGA----------------------------------GTGCAGTTGAACCCATGATACATAAAACATCTTTAGATAACTTGTCCTATTAGATTTAGGCAG---------TACAATTGTAGTTTATTTGGCAGGGCTTTTAGGCAGACGTAAAATCTTTATTGTTATTATAAGACACACTGTTCTCTTGATTGTGTACACTGCCTTTCTGATTTCAC-AAAG-AAAAACATCTGTTT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33117265 329 - 38964690 agagaggcagagacacaggcagagggagaagcaggccccatgccaggagcctgacgcgggactcgatcccgggactccaggatcgcgctctgggccaaaggcaggtgccaaaccact--gagccacccagggatcccAAGAGGGCAGGTTTTAATGTGTGGTTGAGCACCAAGTACATAAAGCATCTTTGGATAATGTGTTCTGTTAGATTTAGATGGGCT-----------------TATATTTGGCA-GGCCTTTATGCAGATTTA-AACCTCTATTATTATCA--AGA-ATACTATCCTCTTGATTTTATACACTACCTTTTTGGTTTTAT-AAACTGAAGACATCTATTT i canFam3.chr26 I 172 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e colAng1.NW_012116043v1 4556143 35 - 8658521 I a score=1058239.000000 s hg38.chr12_KI270834v1_alt 16068 111 + 119498 -AAAAATTA-----TTAGCGAATAG---CATAATATTTATTTGATTATGATCCTGCTGTTTCCGAGGTACTG-AGGCATATCAAAAATTTGTTTG--CATCTTTATG----TGGATAT---GTTcagtgg s panTro5.chr12 127302206 111 + 137163284 -AAAAATTA-----TTAGCGAATAG---CATAATATTTATTTGATTATGATCCTGCTGTTTCTGAGGTACTG-AGGCATATCAAAAATTTGTTTG--CATCTTTATG----TGGATAC---GTTcagtgg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125653168 111 + 135337776 -AAAAATTA-----TTAGCGAATAG---CATAATATTTATTTGATTATGATCCTGCTGTTTCTGAGGTACTG-AGGCATATCAAAAATTTGTTTG--CATCTTTATG----TGGATAC---ATTcagtgg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8166099 111 - 8369578 -AAAAATTA-----TTAGCGAATAG---CATAATATTTATTTGATTATGATCCTGCTGTTTCCGAGGTACTG-AGGCATATCAAAAATTTGTTTG--CATCTTTATG----TGGATAT---GTTcagtgg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97814212 111 + 106955855 -AAAAATTA-----TTAGAGAATAG---CATAATATTTATTTGATAATGATCCTGCTGTTTCTGAGGTACTG-AGGCATATCAAAAATTTGTTTG--CATCTTTATG----TGGATAT---GTTCAGTGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123936598 111 + 133663169 -aaaaaTTA-----TCAGAGAACGG---CATAATATTTATTTGACTATGATCCTGCTGTTTCTGAGGTACTG-AGGCATATAAAGAGTTTGTTTG--CATCTTTATG----TAGATAT---GTTcagtgg i rheMac8.chr11 I 303 C 0 s macFas5.chr11 128184735 111 + 137757926 -aaaaaTTA-----TCAGAGAACAG---CATAATATTTATTTGACTATGATCCTGCTGTTTCTGAGGTACTG-AGGCATATAAAGAGTTTGTTTG--CATCTTTATG----TAGATAT---GTTcagtgg i macFas5.chr11 I 303 C 0 s macNem1.NW_012010578v1 10585433 111 - 16319837 -AAAAATTA-----TCAGAGAACAG---CATAATATTTATTTGACTATGATCCTGCTGTTTCTGAGGTACTG-AGGCATATAAAGAGTTTGTTTG--CATCTTTATG----TAGATAT---GTTcagtgg i macNem1.NW_012010578v1 I 1 C 0 s cerAty1.NW_012001186v1 12207310 111 + 20526591 -AAAAATTA-----TCAGAGAACAG---CATAATATTTATTTGACTATGATCCTGCTGTTTCCGAGGTACTG-AGGCATATAAAAAATTTGTTTG--CATCTTTATG----TAGATAT---GTTcagtgg i cerAty1.NW_012001186v1 I 1 C 0 s chlSab2.chr11 119180254 111 + 128539186 -AAAAATTA-----TCAGAGAACAG---CATAATATTTATTTGACTATGATCCTGCTGTTTCCGAGGTACTG-AGGCATATAAAAAATTTGTTTG--CATCTTTATG----TAGATAC---GCTcagtgg i chlSab2.chr11 I 1 C 0 s manLeu1.NW_012103587v1 493092 111 + 6255621 -AAAAATTA-----TCAGAGAGCAG---CATAATATTTATTTGACTATGATCCTGCTGTTTCTGAGGTACTG-AGGCATATAAAAAGTTTGTTTG--CATCTTTATG----TAGATAT---GTTcagtgg i manLeu1.NW_012103587v1 I 1 C 0 s calJac3.chr9 114761453 111 + 124281992 -TTAAATTA-----TTAGAGAATAG---CATAATGTTTATTTGATTATGATCCTGCTGCTTTTGAGGTACTG-TGGCATATCAAGAGGTTGTTGA--CATCTTTATG----TAGATAT---GTTcagtgg i calJac3.chr9 I 4 C 0 s saiBol1.JH378194 405687 111 - 9212255 -ATAAATTA-----TTAGAGAATAG---CATAATGTTTATTTGATTATGATCCTACTGTTTTTGAGGTACTG-TGGCATATCAAGAAGTTGTTGG--CATTTTTATG----TAGATAT---GTTcagtgg i saiBol1.JH378194 I 4 C 0 s cebCap1.NW_016107484v1 2819281 111 + 4466143 -ATAAATTA-----TTAGAGAATAG---CATAATGTTTATTTGATTATGATCCTACTGTTTTTGAGGTACTG-TGGCATATCAAGAAGTTGTTGG--CATCTTTATG----TAGATAT---GTTCAGCGG i cebCap1.NW_016107484v1 I 4 I 9 s aotNan1.NW_018491581v1 1515541 111 + 5364348 -ATAAATTA-----TTAGCGAATAG---CATAATGTTTATTTGATTATGATCCTACTGTTTTTGAGGTACTG-TGGCATATCAAGAAGTTGTTGG--CATCTTTATG----TAGCTAT---GTTcagtgg i aotNan1.NW_018491581v1 I 4 I 21 s otoGar3.GL873618 4248507 122 + 7922563 -AAAAATCAATTTTTTAGAAAATAG---TATAATATTTGGATGATCATGATACTTCTATTTCTGAGGTATCA-TGGCATATTAAAAA-TTGTTTA--CATCTTTATGTAATTAGATACATAATTcagtag i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33117594 117 - 38964690 AATAACTTA-----TTAGAGAATAAGTTGGTAGGATTGGTAGGATTATGATCCTTCTATTTTT-AGGTACTGTAAGAATTGTAATACCTTATGTAATCAGGTATATA----TAGATCT---GTTcagtgg i canFam3.chr26 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e colAng1.NW_012116043v1 4556143 35 - 8658521 I a score=27611.000000 s hg38.chr12_KI270834v1_alt 16179 11 + 119498 ataaactggta- s panTro5.chr12 127302317 11 + 137163284 ataaactggta- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125653279 11 + 135337776 ataaactggta- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8166210 11 - 8369578 ataaactggta- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97814323 11 + 106955855 ATAAACTGATA- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123936709 9 + 133663169 -tatgctagt-- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128184846 9 + 137757926 -tatgctagt-- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10585544 9 - 16319837 -tatgctagt-- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12207421 9 + 20526591 -tatgctagt-- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119180365 9 + 128539186 -tatgctggt-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 493203 9 + 6255621 -tatgctagt-- i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114761564 9 + 124281992 -tatgctggt-- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 405798 9 - 9212255 -tatgctggt-- i saiBol1.JH378194 C 0 C 0 s otoGar3.GL873618 4248629 9 + 7922563 -tttgctgat-- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33117711 10 - 38964690 -tgtgcaggt-a i canFam3.chr26 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e aotNan1.NW_018491581v1 1515652 21 + 5364348 I e cebCap1.NW_016107484v1 2819392 9 + 4466143 I e colAng1.NW_012116043v1 4556143 35 - 8658521 I a score=113993.000000 s hg38.chr12_KI270834v1_alt 16190 14 + 119498 aaactggatgtctg------- s panTro5.chr12 127302328 14 + 137163284 aaactggatgtctg------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125653290 14 + 135337776 aaactggatgtctg------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8166221 14 - 8369578 aaactggatgtctg------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97814334 14 + 106955855 Aaactggctgtctg------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123936718 14 + 133663169 aaactgaatgtctg------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128184855 14 + 137757926 aaactgaatgtctg------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10585553 14 - 16319837 aaactgaatgtctg------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12207430 14 + 20526591 aaactgaatgtctg------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119180374 14 + 128539186 aaactgaatgtctg------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 493212 14 + 6255621 aaactgaatgtctg------- i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114761573 14 + 124281992 aaactgggtgtcta------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 405807 14 - 9212255 aaactgggtgtcta------- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2819401 14 + 4466143 AAACTGGGTGTCTA------- i cebCap1.NW_016107484v1 I 9 C 0 s otoGar3.GL873618 4248638 14 + 7922563 aaattggctctctg------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33117721 20 - 38964690 -aagtggatttctgaaaaaag i canFam3.chr26 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e aotNan1.NW_018491581v1 1515652 21 + 5364348 I e colAng1.NW_012116043v1 4556143 35 - 8658521 I a score=352473.000000 s hg38.chr12_KI270834v1_alt 16204 40 + 119498 gaaaaaa-tttttttaaagctttgatttaaagcagttgcca s panTro5.chr12 127302342 40 + 137163284 gaaaaat-tttttttaaagctttgatttaaagcagttgcca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125653304 40 + 135337776 gaaaaat-tttttttaaagctttgatttaaagcagttgcca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8166235 40 - 8369578 gaaaaat-tttttttaaagctttgatttaaagcagttgcca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97814348 40 + 106955855 gaaaaaa-agtttttaaagctttgatttaaagcatttgcca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123936732 39 + 133663169 ggaaaaa--ttttttaaagctttgatttaaagtatttgcca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128184869 39 + 137757926 ggaaaaa--ttttttaaagctttgatttaaagtatttgcca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10585567 39 - 16319837 ggaaaaa--ttttttaaagctttgatttaaagtatttgcca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12207444 40 + 20526591 ggaaaaa-tttttttaaagctttgatttaaagtatgtgcca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119180388 40 + 128539186 ggaaaat-tttttttaaagctttgatttaaagtatttgcca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 493226 40 + 6255621 ggaaaat-tttttttaaagctttgatttaaagtatttgcca i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114761587 40 + 124281992 -taaaaattttttttaaagctttgatttaaagcatttgcca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 405821 39 - 9212255 -taaaaa-tttttttaaagctttgatttaaatcatttgcca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2819415 39 + 4466143 -TAAAAA-TTCTTTTaaagctttgatttaaagcatttgcca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1515673 40 + 5364348 ataaaaa-tttttttaaagctttgatttaaagcatttgcca i aotNan1.NW_018491581v1 I 21 C 0 s otoGar3.GL873618 4248652 39 + 7922563 -gaaaaa-aatttaagaagcattgatttagagtgtctacca i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33117741 34 - 38964690 gaaaaaa-------aaaagctttgatttagagaattcatca i canFam3.chr26 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e colAng1.NW_012116043v1 4556143 35 - 8658521 I a score=1491475.000000 s hg38.chr12_KI270834v1_alt 16244 128 + 119498 atttccatggtgcaaatattcctgccatggctgatttcaaagctaAATGAAATAA------GTGgtttaacaaccagcttgcaaaattccagaatattcgacagttag-tcttg-----tgacaggaggtggccctagca------------------ s panTro5.chr12 127302382 128 + 137163284 atttccatggtgcaaatattcctgccatggctgatttcaaagctaAATGAAATAA------GTGgtttaacaacaagcttgcaaaattccagaatattcgacagttag-tcttg-----tgacaggaggtggccctagca------------------ i panTro5.chr12 C 0 C 0 s panPan2.chr12 125653344 128 + 135337776 atttccatggtgcaaatattcctgccatggctgatttcaaagctaAATGAAATAA------GTGgtttaacaacaagcttgcaaaattccagaatattcgacagttag-tcttg-----tgacaggaggtggccctagca------------------ i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8166275 128 - 8369578 atttccatggtgcaaatattcctgccatggctgatttcaaagctaAATGAAATAA------GTGgtttaacaaccagcttgcaaaattccagaatattcgacagttag-tcttg-----tgacaggaggtggccctagca------------------ i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97814388 134 + 106955855 atttccatggtgcaaatattcctgccatggctgatttcaaagctaAATGAaataatagtacgtggtttaacaaccagcttgcaaaattccacaatattcgacagttag-tcttg-----tgacaggaggcggccctagca------------------ i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123936771 139 + 133663169 gtttccatggtgcaaatattcctgtcatggctgatttcaaAGCTCAGTGAAATAACAGTAAGTGgtttaacaaccagcttgcagaattcctgagtatttgacagttag-tcttgcgagttgttaggaggtggccctagca------------------ i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128184908 139 + 137757926 gtttccatggtgcaaatattcctgtcatggctgatttcaaAGCTCAGTGAAATAACAGTAAGTGgtttaacaaccagcttgcagaattcctgagtatttgacagttag-tcttgcgagttgttaggaggtggccctagca------------------ i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10585606 139 - 16319837 gtttccatggtgcaaatattcctgtcatggctgatttcaaAGCTCAGTGAAATAACAGTAAGTGgtttaacaaccagcttgcagaattcctgagtatttgacagttag-tcttgcgagttgttaggaggtggccctagca------------------ i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12207484 139 + 20526591 gtttccatggtgcaaatattcctgtcatggctgatttcaaAGCTCAGTGAAATAGCAGTAAGTGgtttaacaaccagcttgcagaattcctgagtatttgacagttag-tcttgcgagttgataggaggtggccctagca------------------ i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119180428 139 + 128539186 gtttccatggtgcaaatattcctgccatggctgatttcaaAGCTCAATGAAATAACAGTAAGTAgtttaacaaccagcttgcagaattcctgagtatttgacggtcag-tcttgcgagttgataggaggtggccctagca------------------ i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 493266 135 + 6255621 gtttccatggtgcaaatattcctgtcatggctgatttcaaAGCTCAGTGAAATAACAGTAAGTGgtttaacaaccagcttgcagaattcctgagtatttga----cag-tcttgcgagttgataggaggtggccctagca------------------ i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4556178 139 - 8658521 atttccatggtgcaaatattcctgccatggctgatttcaaAGCTCAATGAAATAACAGTAAGTGgtttaacaaccagcttgcaaaattcctgagtatttgacagttag-tcttgcgagttgataggaggtggccctagca------------------ i colAng1.NW_012116043v1 I 35 C 0 s calJac3.chr9 114761627 139 + 124281992 atttccgtggtgcaaatatttctgccatggctgatttcaaagcttaatgaaataacagtaagtgttttaacaaccagcttgccagattcttgaatatttgacaattag-tcttgtgagctgataggaggtggctctagca------------------ i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 405860 139 - 9212255 atttccatggtgcaaatatttctgccatggctgatttcaaagctaAATGAAATAAAAGTAAGTGTtttaacaactagcttgccaaattcctgaatatttgacaattag-tcttgtgagctgataggaggtggctctagca------------------ i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2819454 139 + 4466143 gtttccatggtgcaaatatttctgccatggctgatttcaaagctaAATGAAAtaatagtaagtgttttaacaaccagcttgccaaattcctgaatatttgacaattag-tcttgtgagctgataggaggtggctctagca------------------ i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1515713 135 + 5364348 gtttccatggtgcaaatatttctgccatggctgatttcaaagctaaacgAAAtaatagtaagtgttttaacaaccagcttgccaaattcctgagtatttgac----ag-tcttgtgagctgataggaggtggctctagca------------------ i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4248691 138 + 7922563 gtgtccatagtataaatcctcttaccatggttaattccaaAGGTGAATAGaataatggtaagtagtttaataaccaagttgcagaattcctgaatgtctgacagttag--cttgtgagctgataggaggtggccccaaca------------------ i otoGar3.GL873618 C 0 I 18 s canFam3.chr26 33117775 158 - 38964690 atattcgtggtgtaaatattcccaccatggctgttttcaaAGTTAAGTGGaataatggtaagtggcttgaacatcagactgcaaaattcttgacaatttgaaagtgaactcttgagaactgataggaggtggctctagcacattaTCAGCTATattta i canFam3.chr26 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I a score=646870.000000 s hg38.chr12_KI270834v1_alt 16372 61 + 119498 ttcatttaactaatatttcttcaacccctgctctgggcgatttattatgctagatgctatt s panTro5.chr12 127302510 61 + 137163284 ttcatttaactaatatttcttcaacccctgctctgggcgatttgttatgctagatgctatt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125653472 61 + 135337776 ttcatttaactaatatttcttcaacccctgctctgggcgatttgttatgctagatgctatt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8166403 61 - 8369578 ttcatttaactaatatttcttcaacccctgctctgggctatttattatgctagatgctatt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97814522 61 + 106955855 ttcatttaactaatatatcttcaacccctgctctgggctatttattatgctagatgctatt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123936910 61 + 133663169 ttcatttaaccaatagttcttcaacccctgctctgggctattcactatgctagatgctatt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128185047 61 + 137757926 ttcatttaaccaatagttcttcaacccctgctctgggctattcactatgctagatgctatt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10585745 61 - 16319837 ttcatttaaccaatagttcttcaacccctgctctgggctattcactatgctagatgctatt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12207623 61 + 20526591 ttcatttaaccaatagttcttcaacccctgctctgggctattcactatgctagatgctatt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119180567 61 + 128539186 ttcatttaaccaatagttcgtcaacccctgctctgggctattcactatgctagatgctatt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 493401 61 + 6255621 ctcatttaaccaatagttcttcaacccctgctctgggctattcactatgctagatgctatt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4556317 61 - 8658521 ttcattgaaccaatatttcttcaacccctgctctgggctattcactatgctagatgctatt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114761766 61 + 124281992 ttcgtttaactagtatttcttccacccctgctctgggctattcactatgttagatgctatt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 405999 61 - 9212255 ttcatttaactaatatttcttccgcccctgctctgggctattcactacgctagatgctatt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2819593 61 + 4466143 ttcatttaactaatattccttccacccctgctctgggctattcactacgctagatgctatt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1515848 61 + 5364348 ttcatttaactaatatttcttccacccctgctctgggctattcactacgctagatgctatt i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33117933 61 - 38964690 ttgattgaactaatatttatcggattcctgctatgagcttatcactgtggtatatgccctt i canFam3.chr26 C 0 I 216 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e otoGar3.GL873618 4248829 18 + 7922563 I a score=1960889.000000 s hg38.chr12_KI270834v1_alt 16433 197 + 119498 tcaaaactgaactagacagaaatctctgccttcTGTATGTATTAATCACTGAATGTTTTAAATTATCTTTTCTGCTCCAAAATACTGTGAAGTTTACACCAGCATCAGTTGATTTTATTTTCACGATAGCTACCACTTTGCTAGGGCATTGCTATGTTTGGTAGTGCTGAGTTGGTGGAAG--AGAGTAAGGGAATGCA s panTro5.chr12 127302571 197 + 137163284 tcaaaactgaactagacagaaatctctgccttcTGTATGTATTAATCACTGAATGTTTTAAATTATCTTTTCTGCTCCAAAATACTGTGAAGTTTACACCAGCATCAGTTGATTTTATTTTCACGATAGCTACCACTTTGCTAGGGCATTGCTACGTTTGGTAGTGCTTAGTTGGTGGAAG--AGAGTAAGGGAATGCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125653533 197 + 135337776 tcaaaactgaacttgacagaaatctctgccttcTGTATGTATTAATCACTGAATGTTTTAAATTATCTTTTCTGCTCCAAAATACTGTGAAGTTTACACCAGCATCAGTTGATTTTATTTTCACGATAGCTACCACTTTGCTAGGGCATTGCTACGTTTGGTAGTGCTTAGTTGGTGGAAG--AGAGTAAGGGAATGCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8166464 197 - 8369578 tcaaaactgaactagacagaaatctctgccttcTGTATGTATTAATCGCTGAATGTTTTAAATTATCTTTTCTGCTCCAAAATATTGTGAATTTTACACCAGCACCAGTTGATTTTATTTTCACGATAGCTACCACTTTGCTAGGGCATTGCTACGTTTGGTAGTGCTTAGTTGGTGGAAA--AGAGTAAGGGAATGCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97814583 197 + 106955855 tcaaaactgaactagacagaaatctctgccttcTGTATGTATTGATCACTGAATGTTTTAAATTATCTCTCCTGCTCCAAAATACTGTGAATTTTACACCAGCATCAGTTGATTTTATTTGCATGATAGCTACCACTTTGCTAGGGCATTGCTACGTTTGGTAGTGCTTAGTTGGTGGAAA--AGAGTAAGGGAATGCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123936971 197 + 133663169 tcaaaaccaaactagacagaagtctctgccttcTGTATGTATGAATCGCTGAATGTTTTAAAGTCTCTTTCATGCTCCAAAATACTATGAATTTTATGTCAGCATAAGTTGATTTTATTTGCATGATAGCTACCACTTTGCTAGGGCATTGCTACGTTTGGCAGTTCTTAGTTGGTGGAAA--AGAGTAAGGGAATTCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128185108 197 + 137757926 tcaaaaccaaactagacagaagtctctgccttcTGTATGTATGAATCGCTGAATGTTTTAAAGTCTCTTTCATGCTCCAAAATACTATGAATTTTATGTCAGCATAAGTTGATTTTATTTGCATGATAGCTACCACTTTGCTAGGGCATTGCTACGTTTGGCAGTTCTTAGTTGGTGGAAA--AGAGTAAGGGAATTCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10585806 197 - 16319837 tcaaaaccaaactagacagaagtctctgccttcTGTATGTATGAATCGCTGAATGTTTTAAAGTCTCTTTCATGCTCCAAAATACTATGAATTTTATGTCAGCATAAGTTGATTTTATTTGCATGATAGCTCCCACTTTGCTAGGGCATTGCTATGTTTGGCAGTTCTTAGTTGGTGGAAA--AGAGTAAGGGAATTCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12207684 197 + 20526591 tcaaaaccaaactagacagaagtctctgccttcTGTATGTATTAATCGCTGAATGTTTTAAAGTCTCTTTCTTGCTCCAAAATACTATGAATTTTACGTCAGCATAAGTTGATTTTATTTGCATGATAGCTACCACTTTGCTAGGGCATTGCTACATTTGGCAGTTCTTAGTTGGTGAAAA--AGAGTAAGGGAATTCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119180628 197 + 128539186 tcaaaaccaaactagacagaagtctctgccttcTGTATGTATTAATCACTGAATGTTTTAAAGTCTCTTTCATGCTCCAAAATACTATGAATTTTACGTCAGCATCAGTTGATTTTATTTGCATGATAGCTACCACTTTGCTAGGGCATTGCTACGTTTGGCAGTTCTTAGTTGGTGGAAA--AGAGTAAGGGAATTCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 493462 197 + 6255621 tcaaaaccaaactagacagaagtctctgccttcTGTATGTATTAATCGCTGAATGTTTTAAAGTCTCTTTCATGCTCCAAAATACTATGAATTTTATGTCAGCATAAGTTGATTTTATTTGCATGATAGCTACCACTTTGCTAGGGCATTGCTACGTTTGGCGGTTCTTAGTTGGTGGAAA--AGAGTAAGGAAATTCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4556378 196 - 8658521 tcaaaaccagactagacagaaatctctgccttcTGTATGTATTAATCGCTGAATGTTTTAAAGTCTCTTTCGTGCT-CAAAATACTATGAATTTTAAGTCAGCATCAGTTGATTTTATTTGCATGATAGCTACCACTTTGACAGGGCATTGCTACGTTTGGCAGTTCTTAGTTGGTGGAAA--AGAGTAAGGGAATTCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114761827 195 + 124281992 tcaaaa-tgaactagacagaaatctctgccttctgtatgtagcAATCGCTGAATGTTTTAAAGTCGCTTTCACGCTTCAGAATACTGTGACTTTTACGTCTGTGTCAGTTGATTTTATTTGCACGATGGCTGCCAC-TTGCTAGGGCATCGCTACCTTTGGCAGTGCTTACCTGGTGGAAA--AGAGTAAGGGAATGCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 406060 196 - 9212255 tcaaaa-tgaactagacagaaatctctgccttatgtatgtagcaatcacagAATGTTTTAAAGTCTCTTTCATGCTTCAGAATACTGTGAATTTTACATCTGTATCAGTTGATTTTATTTGCATGATGGCCGCCACTTTGCTAGGGCATCGCTACATTTGGCCATGCTTACCTGGTGGAAA--AGAGTGACGGAATGCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2819654 196 + 4466143 tcaaaa-tgaactagatagaaatctctgccttatgTATGTAGCAATCGCTGAATGTTTTGAAGTCTCTTTCATGCTTCAGAATACTGTCAATTTTACATCTATATCAGTTGATTTTATTTGCATGATGTCTACCATTATGCTAGGGCATCGCTGCGTTTGGCAGTGCTTACCTGGTGGAAG--AGAGTGAGGGAAGGCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1515909 196 + 5364348 tcaaaa-tgaactagacagaaatctctgccttcTGTATGTAGCGATCACTGAATGTTTTAAAGTCTCTTTCATGCTTCAAAATACTGTGAATTTTACATCTGTATCAGTTGATTTTATTTGCATGATGGCTACCACTTTGCTAGGGCATCGCTATGTTTGGCAGTGCTTACCTGGTGGAAA--AGAGTAAGGGAATGCA i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33118210 195 - 38964690 CCAAAGCTGAACTAGACAGAAATCACCAGCCTCTGGAAGTAGTGATCACTGAGTATTTTGAAGTCTCCTTCATGCTTCCAGATTAGGTGAATTTTGCACCAACATTAG----TTTTATCTACATCATAACTACCACCTTGCCAAGGCATTGCTGTGTGTCACAGGGTGTGGTTGGCAGGAGACAGAGTAAGAGAAAGCA i canFam3.chr26 I 216 I 100 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e otoGar3.GL873618 4248829 18 + 7922563 I a score=3716150.000000 s hg38.chr12_KI270834v1_alt 16630 372 + 119498 GCCTGATGGACTGAAAAAGATCTTTTTCTCATCCAGATGCTCCTTTGAGCACGTGAACTTGTTGCTT-CCAACAGGGAGAATAGTTGACATGAGCATGTGGTTTTATTTGAGCTGATAGGTGTGGCATCACTGAGAAGTTAGGGCCAGCTGTATCTAGTCCCAGGAAGCACC---------------------TTTGCCCTGGTCATTTAATCTTCTCTGATCCTATGGCCTCAGCTGCCACCTCTCC--GTTTCTGATTCTAGGTTTGTCGCGTCCTTTACAAGGCCCGTCTTTGTTCATCATTTCGGTGTCGTCCTCTGGGCCTTCGTAATCTTTGTTGTCTCTCTCCTGATGTGTAGGAATCATGGATAT----AAGTGATCTTTAGGTTTTCGCTG s panTro5.chr12 127302768 395 + 137163284 GCCTGATGGACTGAAAAAGATCTTTTTCTCATCCAAATGCTCCTTTGAGCACGTGAACTTGTTGCTT-CCAACAGGGAGAATAGTTGACATGAGCGTGTGGTTTTCTTTGAGCTGATACATGTGGCATCACTGAGAAGTTAGGGCCAGCTGTATCTAGTCCCAGGAAGCACCAGCATCCCGGGATTTCTTAGCTTTGCCCTGGTCATTTAATCTTCTCTGATCCTATGGCCTCAGCTGCCACCTCTCTCTGTTTCTGATTCTAGGTTTGTCGCGTCCTTTACAAGGCCCGTCTTTGTTCATCATTTCGGTGTCGTCCTCTGGGCCTTCATAATCTTTGTTGTCTCTCTCCTGATGTGTAGGAATCATGGATAT----AAGTGATCTTTAGGTTTTCGCTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125653730 395 + 135337776 GCCTGATGGACTGAAAAAGATCTTTTTCTCATCCAAATGCTCCTTTGAGCACGTGAACTTGTTGCTT-CCAACAGGGAGAATAGTTGACATGAGCGTGTGGTTTTCTTTGAGCTGATACATGTGGCATCACTGAGAAGTTAGGGCCAGCTGTATCTAGTCCCAGGAAGCACCAGCATCCCGGGATTTCTTAGCTTTGCCCTGGTCATTTAATCTTCTCTGATCCTATGGCTTCAGCTGCCACCTCTCCCTGTTTCTGATTCTAGGTTTGTCGCGTCCTTTACAAGGCCCGTCTTTGTTCATCATTTCGGTGTCGTCCTCTGGGCCTTCATAATCTTTGTTGTCTCTCTCCTGATGTGTAGGAATCATGGATAT----AAGTGATCTTTAGGTTTTCGCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8166661 395 - 8369578 GCCTGATGGACTGAAAAAGATCTTTTTCTCATCCAAATGCTCCTTTGAGCACGTGAACTTGTTGCTT-CCAACAGGGAGAATAGTTGACATGAGCGTGTGGTTTTATTTGAGCTGGTACGTGCGGCATCACTGAGAAGTTAGGGCTAGCTGTATCTAGTCCCAGGAAGCACCAGCATCCCGGGATTTCTTAGCTTTGCCCAGGTCATTTAATCTTCTCTGATCCTATGGCCTCAGCTGCCACCTCTCCCTGTTTCTGATTCTAGGTTTGTCGCGTCCTTTACAAGGCCCGTCTTTGTTCATCATTTCGGTGTCGTCCTCCGGGCCTTCGTAATCTTTGTTGTCTCTCTCCTGATGTGTAGGAATCATGGATAT----AAGTGATCTTTAGGTTTTAGCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97814780 396 + 106955855 GCCTGATGGACTGAAAAAGATCTTTTTCTCATCCAAATGCTCCTTTGAGCACGTGAACTTGTTGCTTCCCAACAGGGAGAATGGTTGGCATGAGCATGTTGTTTTATTTGAGCTGATACGTGTGGCATCACTGAGAAGTTAGGGCCAGGTGTATCTAGTCCCAGGAAACACCAGCATCCTGGGATTTCTTAGCTTTGCCCTGGTCATTTAATGTTCTCTGATCCTACGGCCTCAGCTGCCACCTCTCCCTGTTTCTGATTCTAGGTTTGTCGCGTTCTTTACAAGGCCCGTCTTTGTTCATCTCTTCGGTGTTGTCCTCTGGGCCTTGGTAATCTTTGTTGTCTCTCTCCTGGTGTGTAGGGATCATGGATAT----AAGTAATCTTTAGGTTTTAGCTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123937168 395 + 133663169 GCCTGATGGACTGAAAAAGATATTTTTCtcatcccagtgcgcctttgagcacatgaacttgttgctt-ccaacagggagaatagttgacatgagcatgttgatttatttgagctgatacgtgtggcaTCACTGAGAAGTTAAGGCCAGCTGTATCTAGTCCCAGGAAACACCAGTGTCCTGGGATTTCTTAGCTTTGCCCTGGTCATTTAATCTTCTCTGATCCTGCGGCCTCAGCTGCCACCTCTCCCTGTTTCTGATTCTAGGTTTGTCACGTTCTTTGCAAGGCCAGTCTTTGCTCGTCGTTTCAGTGTCATCCTCTGGGCGTTCGTAATCTTTGTTGTCTCTCTCCTGATGTGTAGGGATCATGGATAT----AAGTAATCTTTAGGTTTTAGCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128185305 395 + 137757926 GCCTGATGGACTGAAAAAGATATTTTTCTCATCCCAGTGCGCCTTTGAGCACATGAACTTGTTGCTT-CCAACAGGGAGAATAGTTGACATGAGCATGTTGATTTATTTGAGCTGATACGTGTGGCATCACTGAGAAGTTAAGGCCAGCTGTATCTAGTCCCAGGAAACACCAGTGTCCTGGGATTTCTTAGCTTTGCCCTGGTCATTTAATCTTCTCTGATCCTGCGGCCTCAGCTGCCACCTCTCCCTGTTTCTGATTCTAGGTTTGTCACGTTCTTTGCAAGGCCAGTCTTTGCTTGTCGTTTCAGTGTCATCCTCTGGGCGTTCGTAATCTTTGTTGTCTCTCTCCTGATGTGTAGGGATCATGGATAT----AAGTAATCTTTAGGTTTTAGCTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10586003 395 - 16319837 GCCTGATGGACTGAAAAAGATATTTTTCtcatcccagtgcgcctttgagcacatgaacttgttgctt-ccaacagggagaatagttgacatgagcatgttgatttatttgagctgatacgtgtggcaTCACTGAGAAGTTAAGGCCAGCTGTATCTAGTCCCAGGAAACACCAGTGTCCTGGGATTTCTTAGCTTTGCCCTGGTCATTTAATCTTCTCTGATCCTGCGGCCTCAGCTGCCACCTCTCCCTGTTTCTGATTCTAGGTTTGTCACGTTCTTTGCAAGGCCAGTCTTTGCTCGTCGTTTCAGTGTCATCCTCTGGGCGTTCGTAATCTTTGTTGTCTCTCTCCTGATGTGTAGGGATCATGGATAT----AAGTAATCTTTAGGTTTTAGCTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12207881 395 + 20526591 GCCTGATGGACTGAAAAAGATATTTTTCtcatcccaatgcgcctttgagcacatgaacttgttgctt-ccaacagggagaatagttgacatgagcatgttgatttatttgagctgatacgtgtggcaTCACTGAGAAGTTAAGGCCAGCTGTATCTAGTCCCAGGAAACACCAGTGTCCTGGGATTTCTTAGCTTTGCCCTGGTCATTTAATCTTCTCTGATCCTGCGGCCTCAGCTGCCACCTCTCCCTGTTTCTGATTCTAGGTTTGTCATGTTCTTTGCAAGGCCAGTCTTTGCTCGTCATTTCAGTGTCATCCTCTGGGCGTTCGTAATCTTTGTTGTCTCTCTCCTGATGTGTAGGGATCATGCATAT----AAGTAATCTTTAGGTTTTAGCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119180825 395 + 128539186 GCCTGATGGACTGAAAAAGATATTTTTCCCACCCCAATGCGCCTTTGAGCACATGAACTTGTTGCTT-CCAACAGGGAGAATAGTTGACATGAGCATGTTGATTTATTTGAGCTGATACGTGTGGCATCACTGAGAAGTTAAGGCCAGCTGTATCTAGTCCCAGGAAACACCAGTGTCCTGGGATTTCTTAGCTTTGCCCTGGTCATTTAATCTTCTCTGATCCTGCGGCCTCAGCTGCCACCTCTCGCTGTTTCTGATTCTAGGTTTGTCGCGTTCTTTGCAAGGCCAATCTTTGCTCGTCATTTCAGTGTCATCCTCTGGGCGTTCGTAATCTTTGTTGTCTCTCTCCTGATGTGTATGGATCATGGATAT----AAGTAATCTTTAGGTTTTAGCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 493659 395 + 6255621 GCCTGATGGACTGAAAAAGATATTTTTCtcatcccaatgcgcctttgagcacatgaacttgttgctt-ccaacagggagaatagttgacatgagcatgttgatttatttgagctgatacgtgtggcaTCACTGAGAAGTTAAGGCCAGCTGTATCTAGTCCCAGGAAACACCAGTGTCCTGGGATTTCTTAGCTTTGCCCTGGTCATTTAATCTTCTCTGATCCTGCGGCCTCAGCTGCCACCTCTCCCTGTTTCTGATTCTAGGTTTGTCACGTTCTTTGCAAGGCCAGTCTTTGCTCGTCATTTCAGTGTCATCCTCTGGGTGTTCGTAATCTTTGTTGTCTCTCTCCTGATGTGTAGGGATCATGCATAT----AAGTAATCTTTAGGTTTTAGCTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4556574 395 - 8658521 GCCTGATGGACTGAAAAAGATATTTTTCTCATCCCAATGTGCCTTTGAgcacatgaacttgttgctt-ccaacagggagaatagttgacatgagcatgctgatttatttgagctgacacgtgtGGCATCACTGAGAAGTTAAGGCCAGCTGTATCTAGTCCCAGGAAACACCAGCGTCCTGGGATCTCTTAGCTTTGCCCTGGTCATTTAATCTTCTCTGATCCTGTGGCCTCAGCTGCCACCTCTCCCTGTTTCTGATTCTAGGTTTGTCATGTTCTTTGCAAGGCCCATCTTTGCTCGTCATTTCAGTGTCATCCTCTGGGTGTTCGTAATCTTTGTTGTCTCTCTCCTGATGTGTAGGAATCATGGATAT----AAGTAATCTTTAGGTTTTAGCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114762022 392 + 124281992 GCCTGATGGACTGGAAAAGATCTTTTTCTCATCCACGTGCTCCTTGGAGCACATGAACTTGTTGCTT-CCAACAGGGGGACTAG-----ATGAGCATGTTGATTTATTTGTGCTGACATGTGTGGCATCACTGAGATGTTAGGGCTGGGTGGATCTAGTCCCAGGAAACACCAGTGTCCTAGGCTTTCTTAGCTTTACCCTGGTCATTCTATCTTCTCTGATCCTGTGGCCTCTGCTTCCACCTCTCCCTGTTTCTGATTCCAGGTGTGT--TGTCCTTTGCAAGACCTATCTTTGTTCATCATTTCGGTGTCGTCCTCTGGGCCTTCATAATCTTTGCTGTGTCTCTCCTGATGTGTAGGGATCATAGGTTCTGTAAATTAATCTTCAGGCTTTAGCTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 406256 389 - 9212255 GCCTGA-GGACTG--AAAGATCTTTTTCTCATCCAGATGCTCCTTGAAGCACATGAACTTGTTGCTT-CCAACAGGGGGACCAG-----ATGAGCATGTTGATTTGCTTGTGCTGACACGTGTGGCGTCACTGAGAAGTTAGGGCCAGGTGTATCTAGTCCCAGGAAACACCAGCATCCTAGGCTTTCTTAGCTTTGCCCTGGTCATTCTATCTTCTCTGATCCCGTGGCCTCAGCTTTCACCTCTTCCTGTTTCCGATTCCAGGTGTGT--TGTGCTTTGCAAGACCCATCTTTGTTCATCATTCCAGTGTCGTCCTCTGGGCCTTCATAATCTTTGTTGTGTCCCTCCTGATATGTAGGGATCATAGGTACTGTGAATTCATCTTCAGGCTTTAGCTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2819850 391 + 4466143 GCCTGA-GGACTGAAAGAGATCTTTTTCTCTTCCAGATGCTCCTTTGAGTGCATGAACTTGTTGCTT-CCAACAGGGGGACTAG-----ATGAGCATGTTGATTTATTTGTGCTGACACATGTGGCATCACTGAGAAGTTAGGGCCAGGTGTATCTAGTCCCAGGAAACACCAGCGTCCTAGGCTTTCTTAGCTTTGCCCTGATCATTCTATCTTCTCTGATCCTGTGGCCTCAGCTTCCACCTCTTCCTGTTTCTGATTCCAGGTGTGT--TGTCCTTTGCAAGACCCATCTTTGTTCATCAATTCGGTATGGTCCTCTGGGCCTTCGTAATCTTTGTTGTGTCTCTCCTGATGTGTAGGGATCATAGATACTGTAAATTAATCTTCAGGCTTTAGCTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1516105 391 + 5364348 GGCTGA-GGACTGAAAAAGATCTTTTTCTCATCCAGATGCTCCTTTGAgcacatgaacttgttgctt-ccaacaggaggactag-----atgagcgtgttgatttatttgtgctgacacgtgtGGCATCACTGAGAAGTTAGGGCCAGGTGTATCTAGTCCCAGGAAACACCAGCGTCCTAGGCTTTCTTAGCTTTGCCCTGGTCATTCTATCTTCTCTGATCCTGTGGCCTCTGCTTCCACCTCTCCCTGTTTCTGATTCCAGGTGTGT--TGTCCTTTGCaagacccacctttgttcatcatttcggcgtcatcctctgggcctttgtaatctttgttgtgtctctcctgatgtgtagggatcataggtactgtgaattaatcttcaggcttgagctg i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33118405 100 - 38964690 I e otoGar3.GL873618 4248829 18 + 7922563 I a score=417784.000000 s hg38.chr12_KI270834v1_alt 17002 39 + 119498 CACCACACAATTTTAAAATAAAACAACAAAGGTCAATGT s panTro5.chr12 127303163 39 + 137163284 CACCACACAATTTTAAAATAAAACAACAAAGGTCAATGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125654125 39 + 135337776 CACCACACAATTTTAAAATAAAACAACAAAGGTCAATGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8167056 39 - 8369578 CACCACACAATTTTAAAATAAAACAACAAAGGTCAATGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97815176 39 + 106955855 CACCACACAATTTTAAAATAAAACAACAAAGGTCAATAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123937563 39 + 133663169 CACCGCAGAATTTTAAAATAAGACAACAAAGGTCAATGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128185700 39 + 137757926 CACCGCAGAATTTTAAAATAAGACAACAAAGGTCAATGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10586398 39 - 16319837 CACCGCAGAATTTTAAAATAAGACAACAAAGGTCAATGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12208276 39 + 20526591 CACCGCAGAATTTTAAAATAAGACAACAAAGGTCAATGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119181220 39 + 128539186 CACCGCAGAATTTTAAAATAAGACAACAAAAGTCAATGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 494054 39 + 6255621 CACCGCAGAATTTTAAAATAAGACAACAAAGGTCAATGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4556969 39 - 8658521 CACTGCAGAATTTTAAACTAAGACAACAAAGGTCAATGt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114762414 39 + 124281992 CACCACAAAGTTTTAAAATGAGACAACAAAGATCAATGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 406645 39 - 9212255 CACCACACAATTTTAAAATGAGCCAACAAAGATCAACGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2820241 39 + 4466143 CACCACAAAATTTTAAAATGAGACAACAAAGATCAATGT i cebCap1.NW_016107484v1 C 0 I 8 s aotNan1.NW_018491581v1 1516496 39 + 5364348 caccacaaaattttaaaatgagacaacaaagatcaatgt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4248847 39 + 7922563 CACCACACAATTTTAAAACAAGATAGAAAAGGTTAACAT i otoGar3.GL873618 I 18 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33118405 100 - 38964690 I a score=10920.000000 s hg38.chr12_KI270834v1_alt 17041 1 + 119498 T s panTro5.chr12 127303202 1 + 137163284 T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125654164 1 + 135337776 T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8167095 1 - 8369578 T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97815215 1 + 106955855 T i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123937602 1 + 133663169 T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128185739 1 + 137757926 T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10586437 1 - 16319837 T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12208315 1 + 20526591 T i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119181259 1 + 128539186 T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 494093 1 + 6255621 T i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4557008 1 - 8658521 t i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114762453 1 + 124281992 T i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 406684 1 - 9212255 T i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1516535 1 + 5364348 t i aotNan1.NW_018491581v1 C 0 I 7 s otoGar3.GL873618 4248886 1 + 7922563 T i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33118405 100 - 38964690 I e cebCap1.NW_016107484v1 2820280 8 + 4466143 I a score=52874.000000 s hg38.chr12_KI270834v1_alt 17042 7 + 119498 ATTTTTA s panTro5.chr12 127303203 7 + 137163284 ATTTTTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125654165 7 + 135337776 ATTTTTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8167096 7 - 8369578 ATTTTTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97815216 7 + 106955855 ATTTTTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123937603 7 + 133663169 CTTTTTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128185740 7 + 137757926 CTTTTTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10586438 7 - 16319837 CTTTTTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12208316 7 + 20526591 CTTTTTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119181260 7 + 128539186 CTTTTTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 494094 7 + 6255621 CTTTTTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4557009 7 - 8658521 cttttta i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114762454 7 + 124281992 CTTTTTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 406685 7 - 9212255 CTTTTTA i saiBol1.JH378194 C 0 C 0 s otoGar3.GL873618 4248887 6 + 7922563 -CTTTTG i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33118405 100 - 38964690 I e aotNan1.NW_018491581v1 1516536 7 + 5364348 I e cebCap1.NW_016107484v1 2820280 8 + 4466143 I a score=63062.000000 s hg38.chr12_KI270834v1_alt 17049 10 + 119498 TTGCTTTTCC s panTro5.chr12 127303210 10 + 137163284 TTGCTTTTCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125654172 10 + 135337776 TTGCTTTTCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8167103 10 - 8369578 TTGCTTTTCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97815223 10 + 106955855 TTGCTTTTCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123937610 10 + 133663169 TTGCTTTTCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128185747 10 + 137757926 TTGCTTTTCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10586445 10 - 16319837 TTGCTTTTCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12208323 10 + 20526591 TTGCTTTTCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119181267 10 + 128539186 TTACTTTTCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 494101 10 + 6255621 TTGCTTTTCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4557016 10 - 8658521 ttgcttttct i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4248893 10 + 7922563 TTGCATTTAA i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33118405 100 - 38964690 I e aotNan1.NW_018491581v1 1516536 7 + 5364348 I e cebCap1.NW_016107484v1 2820280 8 + 4466143 I e saiBol1.JH378194 406692 0 - 9212255 C e calJac3.chr9 114762461 0 + 124281992 C a score=1683268.000000 s hg38.chr12_KI270834v1_alt 17059 313 + 119498 TACttat--------------------ttatttatttatttatttatt--------gagacagagtctcgctctgtcacccaggctggagtgcaatggcgctatctcggcttactacaacctccgccttccaggttcaagcgattctcctgccttagacttctgagtagttgggattacaggtgcacatcaccacacccggctaacttttgtatttttagtagagacagggtttcgccatgttggccaggctggtctcgaactcccgacctcaggtgatctgccggcctcggcctcccaaagcgctgggattacaggcgtgagccaaagcattcggccTCC s panTro5.chr12 127303220 321 + 137163284 TACttat--------------------ttatttatttatttatttatttatttattgagacagagtctcgctctgtcacccaggctggagtgcaatggcgctatctcggcttactacaacctccgccttccaggttcaagcgattctcctgcctcagactcctgagtagttgggattacaggtgcacatcaccacacccggctaacttttgtatttttagtagagacggggtttcgccatgttggccaggctggtctcgaactcccgacctcaggtgatccgccggcctcggcctcccaaagtgctgggattacaggcgtgagccaaagcatccggccTCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125654182 309 + 135337776 TACTTAt--------------------ttatttatttatttatt------------gagacagagtctcgctctgtcacccaggctggagtgcaatggcgctatctcggcttactacaacctccgccttccaggttcaagcgattctcctgcctcagactcctgagtagttgggattacaggtgcacatcaccacacccggctaacttttgtatttttagtagagacggggtttcgccatgttggccaggctggtctcgaactcccgacctcaggtgatccgccggcctcggcctcccaaagtgctgggattacaggcgtgagccaaagcatccggccTCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8167113 312 - 8369578 TACttat--------------------ttatttatttatttatttatt--------gagacaga-tctcgctctgtcacccaggctggagtgcaatggtgctatctcggcttactacaaccttcgccttccaggttcaagcgattctcctgcctcagactcctgagtagttgggattacaggtgcacatcaccacacccggctaacttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcgaactcccgacctcaggtgatctgccggcctcggcctcccaaagtgctgggattacaggcgtgagccaaagcgtccggccTCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97815233 309 + 106955855 TACTTAt--------------------ttatttatttatttatt------------gagacagagtctcgctctgtcacccaggctggagtgcagtggcgcgatctcggcttatcacaacctccgccttccaggttcaagcgattctcctgcctcagactcctgaatagttgggattacaggcatgcaccaccacacctggctaacttttgtatttttagtagagacggggtttcgccatgttggccaggctggtctcgaactcccgacctcaggtgatctgctggccttggcctcccaaagtgctgggattacaggcgtgagccacagcacccagccTCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123937620 329 + 133663169 TACCTAC----ttatttatttatttatttatttatttatttatttatt--------gagacagagtcacgctctgtcacccagcctggagtgcaatagcgcgatctcagcttactgtaacctccgcctcccaggttcaagcgattcttctgcctcagactcccgagtagttgggattacaggcgcccaccaccacacctggctaacttttgtatttttagtacagaccgggttttgccatgttggtcaggctggtcttgaacttgtgacctcaggtgatccaccagtctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggccTCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128185757 333 + 137757926 TACCTACttatttatttatttatttatttatttatttatttatttatt--------gagacagagtcacgctctgtcacccagcctggagtgcaatagcgcgatctcagcttactgtaacctccgcctcccaggttcaagcgattcttctgcctcagactcccgagtagttgggattacaggcgcccaccaccacacctggctaacttttgtatttttagtacagaccgggttttgccatgttggtcaggctggtcttgaacttgtgacctcaggtgatccaccagtctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggccTCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10586455 321 - 16319837 TACCTAC------------ttatttatttatttatttatttatttatt--------gagacagagtcacgctctgtcacccagcctggagtgcaatagcgcgatctcagcttattgtaacctccgcctcccaggttcaagcgattcttctgcctcagactcccgagtagttgggattacaggcgcccaccaccacacctggctaacttttgtatttttagtacagaccgggttttgccatgttggtcaggctggtcttgaacttgtgacctcaggtgatccgccagtctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggccTCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12208333 313 + 20526591 TACttat--------------------ttatttatttatttatttatt--------gagacagagtcgcgctctgtcacccagcctggagtgcaatagcgcgatctcagcttactgtaacctccgcctcccaggttcaagtgattcttctgcctcagactcccgagtagttgggattacaggcgcccaccaccacacctggctaacttttgtatttttagtacagaccgggttttgccatgttggtcaggctggtcttgaacttgcgacctcaggtgatccgccagtctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggccTCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119181277 309 + 128539186 TAC------------------------TTAtttatttatttatttatt--------gagacagagtcacactctgtcacccagcctggagtgcaatagcgcgatctcagcttactgtaacctccgcctcccaggttcaagtgattcttctgcctcagactcccgagtagttgggattacaggcgcctgccaccacacctggctaacttttgtatttttagtacagaccgggttttgccatgttggtcaggctggtcttgaactcgcaacctcaggtgatctgccagtcttggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggtcTCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 494111 329 + 6255621 TACttat----ttatttatttatttatttatttatttatttatttatt--------gagacagagtcgtgctctgtcacccagcctggagtgcaatagcgcgatctcagcttactgtaacctccgcctcccaggttcaagcgattcttctgcctcagactcccgagtagttgggattacaggcacccaccaccacacctggctaacttttgtatttttagtacagaccgggttttgccatgttggtcaggctggtcttgaacttgcaacctcaggtgatccgccagtctcagcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggccTCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4557026 321 - 8658521 tatttat------------ttatttatttgtttatttatttacttttt--------gagacagagtcgcgctctgtcactcagcctggagtgcgatggcgcgatctcagcttactgtaacctccgcctcccaggttcacgcgattcttctgcctcagactcccgagtagttgggattacaggcgcccaccaccacacctggctaacttttgtatttttagtacagacagggttttgccatgttggtcaggctggtcttgaactcctgacctcaggtgatccaccagtctcggcctcccaaagtgctgggattataggtgtgagccaccgcgtccggccTCA i colAng1.NW_012116043v1 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33118405 100 - 38964690 I e otoGar3.GL873618 4248903 0 + 7922563 C e aotNan1.NW_018491581v1 1516536 7 + 5364348 I e cebCap1.NW_016107484v1 2820280 8 + 4466143 I e saiBol1.JH378194 406692 0 - 9212255 C e calJac3.chr9 114762461 0 + 124281992 C a score=882528.000000 s hg38.chr12_KI270834v1_alt 17372 82 + 119498 TACTCTTTTAAATTTATTTTGCCATTAACTGTAGGTCATCAAGATAATGACTATAGTAATCCGCAGTCACTTTTCCAGTATT s panTro5.chr12 127303541 82 + 137163284 TACTCTTTTAAATTTATTTTGCCATTAACTGTAGGTCATCAAGATAATGACTATAGTAATCCGCAGTCACTTTTCCAGTATT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125654491 82 + 135337776 TACTCTTTTAAATTTATTTTGCCATTAACTGTAGGTCATCAAGATAATGACTATAGTAATCCGCAGTCACTTTTCTAGTATT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8167425 82 - 8369578 TACTCTTTTAAATTTATTTTGCCATTAACTGTAGGTCATCAAGATAATGACTATAGTAATCCGCAGTCACTTTTCCAGTATT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97815542 82 + 106955855 TACTCTTTTATATTTATTTTGCCATTAACTGTAGGTCATCAAGATAATGACTGTAGTAATCCGCAATCACTTTTGCGGTATT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123937949 82 + 133663169 TACTCTTTTAAATTTATTTTGCCATTAACTGTAGGTCATCAAGATAATAACTATAGTAACCCGAAGTCACTTTTCCAGTATT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128186090 82 + 137757926 TACTCTTTTAAATTTATTTTGCCATTAACTGTAGGTCATCAAGATAATAACTATAGTAACCCGAAGTCACTTTTCCAGTATT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10586776 82 - 16319837 TACTCTTTTAAATTTATTTTGCCATTAACTGTAGGTCATCAAGATAATAACTATAGTAACCCGAAGTCACTTTTCCAGTATT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12208646 82 + 20526591 TACTCTTTTAAATTTATTTTGCCATTAACTGTAGGTCATCAAGATAATAACTATAGTAACCCGAAGTCACTTTTCCAGTATT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119181586 82 + 128539186 TACTCTTTTAAATTTATTTTGCCATTAACTGTAGGTCATCAAGATAATAACTATAGTAACCCGAAGTCACTTTTCCAGTATT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 494440 82 + 6255621 TACTCTTTTAAATTTATTTTGCCATTAACTGTAGGTCATCAAGATAATAACTATAGTAACCCGAAGTCACTTTTCCAGTATT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4557347 82 - 8658521 TACTCTTTTAAATTTATTTTGCCATTAACTGTAGGTCATCAAGATAATAACTGTAGTAACCCGAAGTCACTTTTCCAGTATT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114762461 82 + 124281992 TACTCATCTAAATATGTTTTGCCATTAACTGTAGGTCATCAAGATAATGACTATGGTACCCCACAGTCCCTTTTCCAGGACT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 406692 82 - 9212255 TACTCTTCTAAATTTATTTTGCCATTAACTGTACGTCATCAAGATAATGACTATGGTAATCCACAGTCACTTTTCCAGTCCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2820288 82 + 4466143 TACTCTTCCAAACTTATTTTGCCATTAACTGTAGGTCATCAGGATAATGACTATGGTAATCCACAGTCCCTTTTCCAGTACT i cebCap1.NW_016107484v1 I 8 C 0 s aotNan1.NW_018491581v1 1516543 82 + 5364348 tactcttctaaatgtaTTTTGCCATTAACTGTAGGTCATCGAGATAATGACTGTGGTAATCCACAGTCACTTTTCCAGTACT i aotNan1.NW_018491581v1 I 7 C 0 s otoGar3.GL873618 4248903 81 + 7922563 TATTCTGTTACGTTTATTTTGTCATTAATTGAAGGTCATTAAAATAG-GACTATGGTAATTCACAATCAATTTTCCAACACT i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33118405 100 - 38964690 I a score=3416544.000000 s hg38.chr12_KI270834v1_alt 17454 382 + 119498 GGCATtgtattactgtgttttcacactgctatacagaaatactcaagactgggtaatttataaag-aaaaaggtttaattgactcacagtcacgcatggctggggaggcctca--------------------------------------------------ggaaacttacagtcatggcggaagacaaaggaaaagcaagtacctttttcac---aaggtggcgggaaagagaga--gagagaaggaggaactaacaaccacttataaaaccgtcagatctcatgagaactcactcagtatcacgagaacagcatg-gggaaaccgcccccatgatccagtcacctcccaccaggtccttccctcaacacctggggattatggggattacaatttgagacgagacgtgggtggggacacagagccaaaccatatca s panTro5.chr12 127303623 432 + 137163284 GGCATtgtattactgtgttttcacactgctatacagaaatactcaagactgggtaatttataaag-aaaaaggtttaattgactcacagtcacgcatggctggggaggcctcaagaaacttacagtcatggcggaaggcaaaggggaagcatgaaaggactcaggaaacttacagtcatggcggaaggcaaaggaaaagcaagtacctttttcac---aaggtggtgggaaagagaga--gagagaaggaggaactaacaaccacttataaaaccatcagatctcatgagaactcactcagtatcacgagaacagcatg-gggaaaccgtccccatgatccaatcacctcccaccaggtccctccctcaacacctggggattacggggattacaatttgagacgagacgtgggtggggacacagagccaaaccatatca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125654573 432 + 135337776 GGCATtgtattactgtgttttcacactgctatacagaaatactcaagactgggtaatttataaag-aaaaaggtttaattgactcacagtcacgcatggctggggaggcctcaagaaacttacagtcatggcggaaggcaaaggggaagcatgaaaggactcaggaaacttacagtcatggcggaaggcaaaggaaaagcaagtacctttttcac---aaggtggtgggaaagagaga--gagagaaggaggaactaacaaccacttataaaaccatcagatctcatgagaactcactcagtatcacgagaacagcatg-gggaaaccgtccccatgatccagtcacctcccaccaggtccctccctcaacacctggggattacggggattacaatttgagacgagacgtgggtggggacacagagccaaaccatatca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8167507 382 - 8369578 GGCATtgtattactgtgttttcacactgctatacagaaatactcaagactgggtaatttataaag-aaaaaggtttaattgactcacagtcacacatggctggggaggcctca--------------------------------------------------ggaaacttacagtcatggcggaaggcaaaggaaaagcaagtacctttttcac---aaggtggcgggaaagagaga--gagagaaggaggaactaataaccacttataaaaccatcggatctcatgagaactcactcagtatcacgagaacagcatg-gggaaactgcccccatgatccagtcacctaccaccaggtccctccctcaacacctgggggttatggggattacaatttgagatgagacgtgggtggggacacagagccaaaccgtatca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97815624 380 + 106955855 GGCATtgtattactctgttttcacgctgctatacagaaatacccaagactgggtaatttataaag-aaaaaggtttaattggctcatagtcacacatagctggggaggcctca--------------------------------------------------ggaaacttacagtcatggtggaaggcaaaggaaaagcaagtacctttttcac---aaggtggcgggaa--agaga--gagaggaggagggactaacaacccctcataaaaccatcagatctcatgagaactcgctcagtatcacgagaacagcatg-gggagaccgcccctatgatccagtcacctcccactgggtccctccctccacacctggggatcatggggactacggtttgagatgagacttgggtggggacacagagccaaaccatatca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123938031 382 + 133663169 GGCATtgtattagtctgttttcacactgctatacagaaatacccaagactgggtaatttataaag-aaaagggtttaattgactcacagttacgcatggctggggaggcctca--------------------------------------------------ggaaacttacagttacggcagaaggcaaaggcaaagcaagtacctttttcacgtggtggtggcaagaa----aga--gagagaaggaggaactaacaaccacttataaaaccatcagatctcatgagaactcactctgtatcgtgagaacagcatgagggaaaccgcccccatgatccaatcacctcccaccaggtccctccctcaacagctgggagttatggggattacaattggagttgcgacttgggtggggacacggagcccaaccatatta i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128186172 379 + 137757926 GGCATtgtattagtctgttttcacactgctatacagaaatacccaagactgggtaatttataaag-aaaaaggtttaattgactcacagttacgcatggctggggaggcctca--------------------------------------------------ggaaacttacagttacggcagaaggcaaaggcaaagcaagtacctttttcac---gtggtggcaagaa----aga--gagagaaggaggaactaacaaccacttataaaaccatcagatctcatgagaactcactctgtatcgtgagaacagcatgagggaaaccgcccccatgatccaatcacctcccaccaggtccctccctcaacagctgggagttatggggattacaattggagttgcgacttgggtggggacacggagcccaaccatatta i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10586858 379 - 16319837 GGCATtgtattagtctgttttcacactgctatacagaaatacccaagactgggtaatttataaag-aaaaaggtttaattgactcacagttacgcatggctggggaggcctca--------------------------------------------------ggaaacttacagttacggcagaaggcaaaggcaaagcaagtacctttttcac---gtggtggcaagaa----aga--gagagaaggaggaactaacaaccacttacaaaaccatcagatctcatgagaactcactctgtatcgtgagaacagcatgagggaaaccgcccccatgatccaatcacctcccaccaggtccctccctcaacagctgggagttatggggattacaattggagttacgacttgggtgggaacacggagcccaaccatatta i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12208728 379 + 20526591 GGCATtgtattagtctgttttcacactgctatacagaaatacccaggactgggtaatttataaag-aaaaaggtttaattgactcacagttacgcatggctggggaggcctca--------------------------------------------------ggaaacttacagttacggcagaaggcaaaggcaaagcaagtacctttttcat---gtggtggcaagaa----aga--gagagaaggaggaactaacaaccgcttataaaaccatcagatctcatgagaactcactctgtatggtgagaacagcatgggggaaaccgcccccatgatccaatcacctcccaccaggtccctccctcaacacctgggagttatggggactacaattggagttgagacttgggtggggacacggagcccaaccatatta i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119181668 379 + 128539186 GGCATtgtattagtctgttttcacactgctatacagaaatacccaagactgggtgatttataaag-aaaaaggtttaattgactcacagttactcatggctggggaggcctca--------------------------------------------------ggaaatttacagttatggcagaaggcaaaggcaaagcaagtacctttttcac---gtggtggcaagaa----aga--gagagaaggagtaactaacaaccacttataaaaccatcagatctcatgagaactcactctgtatcatgagaacagcgtgggggaaaccgcccccctgatccaatcacctcccaccaggtccctccttcaacacctgggggttatgggggttccaattggacttgagacttgggtggggacacggaacccaaccgtatca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 494522 379 + 6255621 GGCATtgtattagtctgttttcacactgctatacagaaataaccaagactgggtaatttataaag-aaaaaggtttaattgactcacagttacgcatggctggggaggcctca--------------------------------------------------ggaaacttacagttacggcagaaggcaaaggcaaagcaagtacctctttcac---gtggtggcaagaa----aga--gagagaaggaggaactaacaaccgcttataaaaccatcaggtctcatgagaactcactctgtatcgtgagaacagcatgggggaaaccgcccccatgatccaatcacctcccaccaggtccctccctcaacacctgggagttatggggattacaattggagttgagacttgggtggggacacggagcccaaccatatta i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4557429 378 - 8658521 GGCATtgtattagtctgttttcacactgctatacataaatacccaggactgggtaatttataaag-aaaaaggtttaattgactcacagttccgcatggctggggaggcctca--------------------------------------------------ggaaacttacagttacggcagaaggtgaaggcaaagcaagtacctttttcat---gtggtggcaagaa----aga--gagagaaggaggaactaacaaccacttataaaaccatccgatctcataagaactcactc-gtatcatgagaacagcatggggggaaccgcccccataatccaatcacctcccaccaggtccctccctcaacacctgggggttatggggattacagttggagttgagacttgagtggggacacggagcccaaccatatca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114762543 369 + 124281992 GGCATtatattagtctgttttcatgctgctatacagaaatacccaagactgggtaattgataaaggaaaaaggtttaattgactcacagttctgcatggttggggaggcctct--------------------------------------------------ggaaactcacagtcatgctggaaggcaaaggagaagcaagtgcctttttcac---aaggtggcaggaa----aga-------gaggaggaactggcagacacttatgaaaccatcagatctcctgtt------ctcagtatcatgagaacagcgtgggggaaactgcccccatgatccagtcacctcccaccaggtccctccctcaacacatggggatgatggggattacaatttgagatgagatttgggtggggacacaaagtcaaaccttacca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 406774 374 - 9212255 GGCATtgtattagtctgttttcatgctgctatacagaaatacccaagactgggtaattgttaaaggaaaaagggtt-attgactcacagttctgcatggctggggaggcctct--------------------------------------------------ggaaacttagagtcatgctggaaggcaaaggagaagcaagtgcgtttttcac---aaggtggcaggaa----agagagtgaggaggaggaactgacaaacacttaggaaaccatcagatctcatgaga----actcagtatcatgagaagggcatgggggaaaccgcccccgggatccagtcacctcccaccgggtccctccctcaacacatggag-tgatggggattacaatttgagatgagatttgggt--ggacacaaagtctaaccttgtca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2820370 379 + 4466143 GGCATtgtattagtctgttttcatgctgctatacagaaatacccaagactgggtaattgataaaggaaaaaggtttaattgactcacagttccgcatggttggggaggcctct--------------------------------------------------ggaaacttgcagtcatgttggaaggcaaaggagaagcaagtgcgtttttcac---aaggtggcaggaa----agagagagagaaggaggaaatgacaaacacttgtgaaaccatcagatctcatgagaa--cacacagtatcatgagaacagcatgggggaaaccgcccccttgatccagtcacctcccaccaggtccctccctcaacacgtgggg-tgatggggattacaatttgagatgagatttgggtggggacacaaagccaaactttatca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1516625 376 + 5364348 GGCATtatattagtctgttttcatgctgctatacagaaatatccaagactgggtaattgataaagaaaaaaggtttaattgactcacagttccgcatggttggggaggcctct--------------------------------------------------ggaaacttacagtcatgctagaaggcaaaggagaagcaagtgcctttttcac---aaggtggcaggaa----aga----gaggaggaggaagtgacagacacttatgaaaccatcagatctcatgactgctcactcagtatcatgagaacagcatggggggaaccgcccccatgatccagtcccctcccaccaggtccctccctcagcacgtggggatcat-gggattacag-ttgagatgagatttgggtgaggacacaaagtcagaccttgtca i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33118405 100 - 38964690 I e otoGar3.GL873618 4248984 0 + 7922563 C a score=2345985.000000 s hg38.chr12_KI270834v1_alt 17836 245 + 119498 GGCATTTACAGCTCTGAGTCCATTATTTTTTAAGTGCAGTTTAGAAAAAAAGCTTTG---TCTAAATGTGTCTCAAGGCAATCACAAGCTTTGTAAGTTAGTGCCTCTggagaggacatccaagtggccaataaac--at--gaaaagaggagaaaccccacgactcagcagg-atc----------tgtacattaagggaggatgagat-gttttgtttcacttttcagactggcaaaaattcaaaagcgtgttacaacCTGG s panTro5.chr12 127304055 245 + 137163284 GGCATTTACAGCTCTGAGTCCATTATTTTTTAAGTGCAGTTTAGAAAAAAAGCTTTG---TCTAAATGTGTCTCAAGGCAATCACAAGCTTTGTAAGTTAGTGCCTCTggagaggacatccaagtggccaataaac--at--gaaaagaggagaaaccccccgactcagcagg-atc----------tgtacattaagggaggatgagat-gtttcgtttcacttttcagactggcaaaaattcaaaagCGTGTTACAACCTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125655005 245 + 135337776 GGCATTTACAGCTCTGAGTCCATTATTTTTTAAGTGCAGTTTAGAAAAAAAGCTTTG---TCTAAATGTGTCTCAAGGCAATCACAAGCTTTGTAAGTTAGTGCCTCTggagaggacatccaagtggccaataaac--at--gaaaagaggagaaaccccccgactcagcagg-atc----------tgtacattaagggaggatgagat-gtttcgtttcacttttcagactggcaaaaattcaaaagCGTGTTACAACCTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8167889 245 - 8369578 GGCATTTACAGCTCTGAGTCCATTATTTTTTAAGTGCAGTTTAGAAAAAAAGCTTTG---TCTAAATGTGTCTCAAGGCAATCACAAGCTTTGTAAGTTAGTGCCTCTggagaggacatccaagtggccaataaac--at--gaaaagaggagaaaccccacgactcagcagg-atc----------tgtacattaagggaggatgagat-gttttgtttcacttttcagactggcaaaaattcaaaagcgtgttacaacCTGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97816004 247 + 106955855 GGCATTTACAGCTCTGAGTCCATTATTTTTTAAGTGCAGTTTAGAAAAAAAGCTTTG---TCTAAATGTGTCTCAAGGCAATCACAAGCTTTGTAAGTTAGTGCCTCTggagaggacatccaagtggccgataaacatat--gaaaagaggagaagccccacgactcagcagg-atc----------tgtacattaagggaggatgagat-gttttgtttcacttttcagactggcaaaaattcaaaagcgtgataCAACCTGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123938413 236 + 133663169 GGCATTTACAGCTCTGAGTCCATTATTTCTTAAGTGCAGTTTAGAAAAAAAGCTTTG---CCTAAATGTGTTTCAAGGCAATCACAAGCTATGTAAGTTAGTGCCTTGGTagaggaaatccaa---------acat--at--gaaaagaggagaaaccccgcaactcagcagg-atc----------tgtacattacgggaggatgaggt-gtttcgtttcacctttcagactggcaaaaattcaaaagcatgataCAGCCTGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128186551 236 + 137757926 GGCATTTACAGCTCTGAGTCCATTATTTCTTAAGTGCAGTTTAGAAAAAAAGCTTTG---CCTAAATGTGTTTCAAGGCAATCACAAGCTATGTAAGTTAGTGCCTTGGTAGAGGAAATCCaa---------acat--at--gaaaagaggagaaaccccgcaactcagcagg-atc----------tgtacattacgggaggatgaggt-gtttcgtttcacctttcagactggcaaaaattcaaaagcatgataCAGCCTGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10587237 236 - 16319837 GGCATTTACAGCTCTGAGTCCATTATTTCTTAAGTGCAGTTTAGAAAAAAAGCTTTG---CCTAAATGTGTTTCAAGGCAATCACAAGCTATGTAAGTTAGTGCCTTGGTAGAGGAAATCCaa---------acat--at--gaaaagaggagaaaccccgcaactcagcagg-atc----------tgtacattacgggaggatgaggt-gtttcgtttcacctttcagactggcaaaaattcaaaagcatgataCAGCCTGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12209107 236 + 20526591 GGCATTTACAGCTCTGAGTCCATTATTTCTTAAGTGCAGTTTGGAAAAAAAGCTTTG---CCTAAATGTGTTTCAAGGCAATCACAAGCTATGTAAGTTAGTGCCTTGGTAGAGGAAATCCaa---------acat--ac--gaaaagaggagcaaccccgcgactcagcagg-atc----------tgtacattacgggaggatgaggt-gtttcgtttcacctttcagactggcaaaaattcaaaagcatgaGACAGCCTGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119182047 236 + 128539186 GGCATTTACAGCTCTGAGTCCATTATTTTTTAAGTGCAGTTTAGAAAAAAAGCTTTG---CCTAAATGTGTTTCAAGGCAATCACAAGCTATGTAAGTGAGTGCCTTGGTAGAGGAAATCCaa---------acat--at--gaaaagaggagacaccccacgactcagcagg-atc----------tgtacattacgggaggatgaggt-gttttgtttcacctttcagactggcgaaaattcaaaagcatgataCAGCCTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 494901 236 + 6255621 GGCATTTACAGCTCTGAGTCCATTATTTCTTAAGTGCAGTTTGGAAAAAAAGCTTTG---CCTAAATGTGTTTCAAGGCAATCACAAGCTATGTAAGTTAGTGCCTTGGTAGAGGAAATCCaa---------acat--at--gaaaagaggagaaaccccgtgactcagcagg-atc----------tgtacattacgggaggatgaggt-gtttcgtttcacctttcagacttgcaaaaattcaaaagcatgataCAGCCTGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4557807 246 - 8658521 GGCATTTATAGCCCTGAGGCCATTATTCTTTAAGTGCAGTTTAGAAAAAGAGCTTTG---CCTAAATGTGTTTCAAGGCAATCACAAGCTATGCAAGTTAGTGCCTTGGTagaggaaatccaa---------acat--at--gaaaagaggagaaaccccacgactcagcagg-atctgtacattaatgtacattaagggaggatgagat-gttttgtttcacctttcagactggcaaaaattcaaaagcatgataCAACCTGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114762912 244 + 124281992 GACATTTTCAGCTCTGAGTCCATTATTTTTTAAGTATACTTTAGAAAAAAAGC-TTG---CCTACATGTATTTCAAGGCACTCACAAGCTTTGCAAGTGAGTGCCTCTGTagaggaaatccaagtggccgataaac--at--gaaaagaggagaaaccccacgaccccatagg-agc----------tgcacattaaggcaggatgggat-gttttgtttcacctttcagactggcagaaattcaaaagCACGATGCAACCTGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 407148 234 - 9212255 GGCATTTTCAGCTCTGAGTCCATTATTTTTTAAGTACACTTTAGAAGAAAAGC-TTG---CCTAAATGTATTTCAAGGCACTCACAAGCTCCGCAAGTGAATGCCTCTATagaggaaatccaagtggccaataaac--atacgaaaagag------------gactccacagg-atc----------tgcacattacagcaggatgggat-gttttgtttcacctttcagactggaagaaattcaaaagCACGATGCAACCTGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2820749 246 + 4466143 GGCATTTTCAGCTCTGAGTCCATTCTTTTTTAAGCACACTTTAGAAAAAAAGC-TTG---CCTAAATGTGTTTCCAGGCACTCACAAGCTTCGCAAGTTAGTGCCTCTGTagaagaaatccacgtggccaataaac--atatgaaaagaggagaaaccccacgactccacagg-atc----------cgcactttaaggccggatgggat-gttttgtttcaccttttagactggcagaaattcaaaagCACGATGCAACCTGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1517001 244 + 5364348 GGCATTTCCAGCTCTGAGTCCGTTATTTTTTAAG-ATACTTTAGAAAAGAAGC-TTG---TCTAAATGGATTGCAAGGCACTCAC-AGCTTCGCAAGTTAGGGCCTCTGTagaggacatccaagtggccgataaac--atctgaaaagaggagaaagcccccaactccgcagg-atc----------tgcacattaaggcaggatgggat-gttttgtttcacctttcagactggcggaaattcaaaagCACGATGCAACCTGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4248984 250 + 7922563 GGAATTTATAGCTCTGAGTCTATTATTCTTTC--TACAGTTTAGAAAGAAAAGCTCGTGCCCTAAATGTATTTCAAGGCATTTCCTAGCTTTGTAAATGAGTATCTCTGTagaggaaatccaactggctgataaac--acaagaaaagaggagaactgtcactatccatctggaatc----------tgcaaattaaggcagaatgagataatgtcttttcacctttcagactggcaaaaattcaaaagcgtggtgaaacctgg i otoGar3.GL873618 C 0 I 725 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33118405 100 - 38964690 I a score=24252.000000 s hg38.chr12_KI270834v1_alt 18081 6 + 119498 CCTGCA s panTro5.chr12 127304300 6 + 137163284 CCTGCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125655250 6 + 135337776 CCTGCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8168134 6 - 8369578 CCTGCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97816251 6 + 106955855 CCTGCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123938649 6 + 133663169 CCTGCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128186787 6 + 137757926 CCTGCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10587473 6 - 16319837 CCTGCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12209343 6 + 20526591 CCTGCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119182283 6 + 128539186 CCTGCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 495137 6 + 6255621 CCTGCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4558053 6 - 8658521 CCTGCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114763156 2 + 124281992 CC---- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 407382 2 - 9212255 CC---- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2820995 2 + 4466143 CC---- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1517245 2 + 5364348 CC---- i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33118405 100 - 38964690 I e otoGar3.GL873618 4249234 725 + 7922563 I a score=145136.000000 s hg38.chr12_KI270834v1_alt 18087 12 + 119498 AACCTGGGCAGT s panTro5.chr12 127304306 12 + 137163284 AACCTGGGCAGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125655256 12 + 135337776 AACCTGGGCAGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8168140 12 - 8369578 AACCTGGGCAGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97816257 12 + 106955855 AACCTGGGCAGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123938655 12 + 133663169 AACCTGGGCAGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128186793 12 + 137757926 AACCTGGGCAGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10587479 12 - 16319837 AACCTGGGCAGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12209349 12 + 20526591 AACCTGGGCAGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119182289 12 + 128539186 AACCTGGGCAGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 495143 12 + 6255621 AACCTGGGCAGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4558059 12 - 8658521 AACCTGGGCAGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114763158 12 + 124281992 AACCTGGGCGGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 407384 12 - 9212255 AGCCTGGGCAGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2820997 12 + 4466143 AGCCTGGGCAGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1517247 12 + 5364348 AACCTGGGCAGT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4249959 10 + 7922563 AACAAGGGCA-- i otoGar3.GL873618 I 725 C 0 s canFam3.chr26 33118505 12 - 38964690 AACATGGGTGGT i canFam3.chr26 I 100 C 0 e micMur3.chr21 9427452 536 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I a score=452500.000000 s hg38.chr12_KI270834v1_alt 18099 32 + 119498 GTGGTCAGAGATTATGAAATTCTTTGTTGGAA s panTro5.chr12 127304318 32 + 137163284 GTGGTCAGAGATTATGAAATTCTTTGTTGGAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125655268 32 + 135337776 GTGGTCAGAGATTATGAAATTCTTTGTTGGAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8168152 32 - 8369578 GTGGTCAGAGATTATGAAATTCTTCGTTGGAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97816269 32 + 106955855 GTGGTCAGAGATTATGAAATTCTTTGTTGGAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123938667 32 + 133663169 GTGGTCAGAGACTATGAAATTCTTTGTTGGAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128186805 32 + 137757926 GTGGTCAGAGACTATGAAATTCTTTGTTGGAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10587491 32 - 16319837 GTGGTCAGAGACTATGAAATTCTTTGTTGGAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12209361 32 + 20526591 GTGATCAGAGACTATGAAATTCTTTGTTGGAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119182301 32 + 128539186 GTGGTCAGAGATTATGAAATTCTTTGTTGGAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 495155 32 + 6255621 GTGGTCAGAGACTATGAAATTCTTTGTTGGAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4558071 32 - 8658521 GTGGTCAGAGATTATGAAATTCTTTGTTGGAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114763170 32 + 124281992 GTGGTCGGAGATGATGGAATTCTTTGTTGGAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 407396 32 - 9212255 GTGGTCGGAGATTATGAAATTCTTTGTTGGAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2821009 32 + 4466143 GTGGTCGGAGATGACGAAATTCTTTGTTGGAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1517259 32 + 5364348 GTGGTCGGAGATTACGAAATTCTTTGTTGGAA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9427988 32 - 31815103 GTGGTCAAAGATTATGAAATTCTTTGTTGGAA i micMur3.chr21 I 536 I 246 s otoGar3.GL873618 4249969 31 + 7922563 -TGGCCAAAGAGTATGAAATTCTTTGCTGAAA i otoGar3.GL873618 C 0 I 53 s canFam3.chr26 33118517 32 - 38964690 GTGGTCAGAGATTATTTAGTTTTTTGTTGGAA i canFam3.chr26 C 0 C 0 e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I a score=194395.000000 s hg38.chr12_KI270834v1_alt 18131 17 + 119498 --TTTTA-----Attttctttctt s panTro5.chr12 127304350 17 + 137163284 --TTTTA-----Attttctttctt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125655300 17 + 135337776 --TTTTA-----Attttctttctt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8168184 17 - 8369578 --ttttt-----attttctttctt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97816301 17 + 106955855 --ttttt-----attttctttctt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123938699 17 + 133663169 --TTTTA-----Attttctttctt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128186837 17 + 137757926 --TTTTA-----Attttctttctt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10587523 17 - 16319837 --TTTTA-----Attttctttctt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12209393 17 + 20526591 --TTTTA-----Attttctttctt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119182333 17 + 128539186 --TTTTA-----Attttctttctt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 495187 17 + 6255621 --TTTTA-----Attttctttctt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4558103 17 - 8658521 --TCTTA-----Attttctttctt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114763202 17 + 124281992 --ttttt-----attttctttctt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 407428 17 - 9212255 --TTTTA-----Attttctttctc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2821041 17 + 4466143 --ttttt-----attttctttctt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1517291 17 + 5364348 --ttttt-----attttctttctt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4250053 17 + 7922563 --ttttt-----tttttttttttt i otoGar3.GL873618 I 53 C 0 s canFam3.chr26 33118549 24 - 38964690 ttttttaaaaagattttatttatt i canFam3.chr26 C 0 I 241 e micMur3.chr21 9428020 246 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I a score=2366686.000000 s hg38.chr12_KI270834v1_alt 18148 228 + 119498 gagacagggtcttgctctgttgccctggccggagtacagtgatgcgagctcggctcactgaagccttgagttcctaggttcaagcaatcctcccacctcagcctcctgaatagctgggaccacaggcatgtaccaccacatctggctaatttttgtatttttggtagagacaaggtttcgctgtgttgcccaggctggtctcaaactcctgagctcaagcaatctgcc s panTro5.chr12 127304367 228 + 137163284 gagacagggtcttgctctgttgccctggccggagtacagtgatgccagcttggctcactgaagccttgagttcctaggttcaagcaatcctcccacctcagcctcctgaatagctgggactacaggcatgtaccaccacatctggctaatttttgtatttttggtagagacaaggtttcgctgtgttgcccaggctggtctcaaactcctgagctcaagcaatctgcc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125655317 228 + 135337776 gagacagggtcttgctctgttgccctggccggagtacagtgatgcgagcttggctcactgaagccttgagttcctaggttcaagcaatcctcccacctcagcctcctgaatagctgggactacaggcatgtaccaccacatctggctaatttttgtatttttggtagagacaaggtttcgctgtgttgcccaggctggtctcaaactcctgagctcaagcaatctgcc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8168201 228 - 8369578 gagacagggtcttgctctgttgccctggccggagtacagtgatgcgagctcggctcactgaagccttgagttcctaggttcaagcaatcctcccacctcagcctcctgaatagctgggactacaggcatgtaccaccacatctggctaatttttgtatttttggtagagacaaggttttgctgtgttgcccaggctggtctcaaactcctgagctcaagcaatctgcc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97816318 228 + 106955855 gagatagggtcttgctctgttgccctggccggagtacggtgatgtgagctcggctcactgaagccttgagctcccgggttcaagcaatcctcccacctcagcctcctgagtagctgggactacaggcatatgccaccacatctggctaatttttgtatttttggtagagacaaggtttcgctgtgttgcccaggctggtctcaaactcttgagctcaagcaatctgcc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123938716 228 + 133663169 gaggtagggtcttactctgttgccctggccacagtacagtggtgtgagctcagctcactgaagccctgagctcctgggttcaagcaatcctcccacctcagcctcctgaataggggggactacaggcatgtgccaccacatctggctaatttttgtatttttggtagagacaaggtttcactgtgttgcccaggctggtctcaaactcctgagctcaagcaatctgcc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128186854 228 + 137757926 gaggcagggtcttactctgttgccctggccacagtatagtggtgtgagctcagctcactgaagccctgagctcctgggttcaagcaatcctcccacctcagcctcctgaataggggggactacaggcatgtgccaccacatctggctaatttttgtatttttggtagagacaaggtttcactgtgttgcccaggctggtctcaaactcctgagctcaagcaatctgcc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10587540 228 - 16319837 gaggcagggtcttactctgttgccctggccacagtacagtggtgtgagctcagctcactgaagccctgagctcctgggttcaagcaatcctcccacctcagcctcctgaataggggggactacaggcatgtgccaccacatctggctaatttttgtatttttggtagagacaaggtttcactgtgttgcccaggctggtctcaaactcctgagctcaagcaatctgcc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12209410 228 + 20526591 gaggcagggtcttactctgttgccctggccacagtacagtggtgtgagctcggctcactgaagccctgagctcctgggttcaagcaatcctcccacctcagcctcctgaatagcggggactacaggcatgtgccaccacatctggctaatttttgtatttttggtagagacaaggtttcactgtgttgcccaggctggtctcaaactcctgagctcaagcaatctgcc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119182350 228 + 128539186 gaggcagggtcttactctgttgccctggccacagtacagtgacgtgagctcggctcactgaagccctgagctcctgggttcaagcaatcctcccacctcagcttcctgaatagcggggactacaggcatgtgccaccacatctggctaatttttgtatttttggtagagacaaggtttcactgtgttgcccaggctggtctcaaactcctgagctcaagcaatctgcc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 495204 228 + 6255621 gaggcagggtcttactctgttgccctggccacagtacagtgatgtgagctcggctcactgaagccctgagctcctgggttcaagcaatcctcccacctcagcctcctgaatagcggggactacaggcatgtgccaccacatctggctaatttttgtatttttggtagagacaaggtttcactgtgttgcccaggctggtctcaaactcctgagctcaagcaatctgcc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4558120 228 - 8658521 gaggcagggtcttactctgttgccctggccacagtacagtgatgtgagctcagctcactgaagccctgagctcctgggttcaagcaatcctcccacctcagcctcctgaatggtggggactacaggcatgtgccaccacatctggctaatttttatatttttggtagagacaaggtttcactgtgttgcccagactggtctcaaactcctgagctcaagcaatctgcc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114763219 225 + 124281992 gagacagggtcttgttctgttgccctggctggagtgctgtggtgtgatcttggctcactgcagccttgagctcctgggttcaagcaaacctcccacctcagcctcctgcatagctgaggctatgggtgggtgccaccacatctggctaatttttgtatttttggtagagccaaggtttcgctgtgttccccaggctggtctcaaactcctgagttcaagcaatcT--- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 407445 225 - 9212255 gagacagggtcttgctctgctgccctggctggagtgcagtggtgtgatctcggctcactgcagccttgagctcctgggttcaagcaatcctcccacctcggcctcctgaatagctggggctacgggtggatgccaccacatctggctaatttttgtatttttggtagagacaaggtttcactgtattctgcaggctggtctcaaactcctgagctcaagcaatct--- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2821058 228 + 4466143 gaggcagggtcttcctctgttgccccggctgaagtgtggtggtgtgatctcggctcactgcagccttgagctcctgggttcaagcaaacctcccacctcaccctcctgaatagctggggctacaggcgggtgccaccacatctggctaatttttgtatttttggtagagacaaggtttcgctgtgttctccaggctggtctcaaacacctgagctcaagcaatctgcc i cebCap1.NW_016107484v1 C 0 I 22 s aotNan1.NW_018491581v1 1517308 226 + 5364348 gagacagggtcttgttctgttgccccggctggagtgtggtggtgtga--ttggctcactgcagccttgagctcctgggttcaagcaaacttcccacctcagcctcctgaatagctgaggctatgggcgggtgccaccacatctggctaatttttgtatttttggtagagacaaggttttaccgtgttcaccaggctggtcccaaactcctgagctcaagcaatcTGCC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4250070 168 + 7922563 gagacagagtcttactatgtggccctcggtagagtgctgtggtgtcacc---actcacagcaacctcaaattcttaggtttaagtgattcctttgcctcagcctcccaagtagctgagactataggcgcccaccataatgcctggctattttt-----------------------------gtgttgc----------------------------agttgtttacc i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9428020 246 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33118573 241 - 38964690 I a score=380255.000000 s hg38.chr12_KI270834v1_alt 18376 69 + 119498 ccagcttggcctcccataatgctgggattacaggtgtgagccaccgtgcccagccTGGAATA-TTGTTTT s panTro5.chr12 127304595 69 + 137163284 ccagcttggcctcccataatgctgggattacaggtgtgagccaccgtgcccagccTGGAATA-TTGTTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125655545 69 + 135337776 ccagcttggcctcccataatgctgggattacaggtgtgagccaccgtgcccagccTGGAATA-TTGTTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8168429 69 - 8369578 ccagcttggcctcccataatgctgggattacaggtgtgagccaccgtgcccagccTGGAATA-TTGCTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97816546 70 + 106955855 ccagcttggcctcccataatgctgggattacaggtgtgagccaccatgcccagccTGGAATATTTTTTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123938944 69 + 133663169 gcagctgggcctcccataatgctgggattacaggtatgagccaccatgcccagccTGGAATG-TGTTTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128187082 69 + 137757926 gcagctgggcctcccataatgctgggattacaggtatgagccaccatgcccagccTGGAATG-TGTTTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10587768 69 - 16319837 gcagctgggcctcccataatgctgggattacaggtatgagccaccatgcccagccTGGAATG-TGTTTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12209638 70 + 20526591 gcagctgggcctcccataatgctgggattacaggtatgagctaccatgcccagccTGGAATGTTTTTTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119182578 69 + 128539186 gcagcttggcctcccataatgctgggattacaggtatgagccaccatgcccagccTGGAATA-TTTTTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 495432 69 + 6255621 gcagctgggcctcccataatgctgggattacaggtatgagctaccatgcccagccTGGAATG-TTTTTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4558348 69 - 8658521 gcagcttggcctctcataatgctaggattacaggtatgagccaccatgcccagccTGGAATA-TTTTTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114763444 30 + 124281992 ---------------------------------------GCTGCTGTGCCTGGCCTGAAAtt-ttttttt i calJac3.chr9 C 0 I 16 s saiBol1.JH378194 407670 30 - 9212255 ---------------------------------------gccgccGTGCCTGGCCTGGaatt-ttttttt i saiBol1.JH378194 C 0 I 9 s aotNan1.NW_018491581v1 1517534 27 + 5364348 ------------------------------------------GCTGTGCCCGGCCTGGAttt-ttttttt i aotNan1.NW_018491581v1 C 0 I 12 s otoGar3.GL873618 4250238 35 + 7922563 -----ttggtgt---atgtggctggcactgta-------accactgtgct-------------------- i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9428020 246 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33118573 241 - 38964690 I e cebCap1.NW_016107484v1 2821286 22 + 4466143 I a score=3292541.000000 s hg38.chr12_KI270834v1_alt 18445 346 + 119498 ACTTCTTACA-TAAA-CCTCAAATACTAAGTAAGTTTGAAAACCTATAATCAAATAttttattttatttta-----------------------------------ttttttagagacagggccttgctctgtcactcaggttggagtacagtg-cacaattgtagttggctgcggcctccaactcctgggctccagcgc--------------ccctgg------agtagctgggactacaggcatgcgtcattatgcctggctagtttttaattta-ttttttgtagagatagggttttgctatg-ttgcccaggctagtcttgaactcctggcttcaagtgatcctcttccttggcctcccaaagtgttgggtttacaggcgtgagctaccacgactggccC-------C s panTro5.chr12 127304664 347 + 137163284 ACTTCTTACAATAAA-CCTCAAATACTAAGTAAGTTTGAAAACCTATAATCAAATAttttattttatttta-----------------------------------ttttttagagacagggccttgctctgtcactcaggttggagtacagtg-cacaatcgtagttggctgcggcctccaactcctgggctccagcgc--------------ccctgg------agtagctgggactacaggcacgcatcattatacctggctagtttttaattta-ttttttgtagagatagggttttgctatg-ttgcccaggctggtcttgaactcctggcttcaagtgatcctcttccttggcctcccaaagtgttgggattacaggcgtgagctaccacgactggccC-------C i panTro5.chr12 C 0 C 0 s panPan2.chr12 125655614 347 + 135337776 ACTTCTTACAATAAA-CCTCAAATACTAAGTAAGTTTGAAAACCTATAATCAAATAttttattttatttta-----------------------------------ttttttagagacagggccttgctctgtcactcaggttggagtacagtg-cacaatcgtagttagctgcggcctccaactcctgggctccagcgc--------------ccctgg------agtagctgggactacaggcacgcgtcattatacctggctagtttttaattta-ttttttgtagagatagggttttgctatg-ttgcccaggctggtcttgaactcctggcttcaagtgatcctcttccttggcctcccaaagtgttgggattacaggcgtgagctaccacgactggccC-------C i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8168498 347 - 8369578 ACTTCTTACAATAAA-CCTCAAATACTAAGTAAGTTTGAAAACCTATAATCAAATAttttattttatttta-----------------------------------ttttttagagacagggccttgctctgtcactcaggttggagtacagtg-cacaatcgtagttggctgcggcctccaactcctgggctccagcgc--------------ccctgg------agtagctgggactacaggcacgcgtcattacgcctggctagtttttaattta-ttttttgtagagatagggttttgctatg-ttgcccaggctggtcttgaactcctggcttcaagtgatcctcttccttggcctcccaaagtgttgggattacaggcgtgagctaccacgactggccC-------C i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97816616 345 + 106955855 ACTTCTT--AATAAA-CCCCAAATACTAAGTAAGTTTGAAAACCTATAATCAAATAttttattttatttta-----------------------------------ttttttagagacagggccttgctctgtcactcaggttgaagtacagtg-cacaatcgtagttggctgcagcctccaactcctgggcttcagcac--------------ccctgg------agtagctgggactacaggcatgcatcattatgcctggctagtttttaatgta-ttttttgtagagatagggttttgctatg-ttgcccaggctggtcttgaactcctggcttcaagtgattctcctccttggcctcccaaagtgttgggattacaggtgtgagctaccacgactggccC-------C i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123939013 362 + 133663169 ACTTCTTACAATAAA-CCCCAAATACTAAGTAAGTTTGAAAACCT-TAATCAAAtattttattttattttattttattttatttta-----------------t--tttGTTAgagacagggccttgctctgtcactcaggttggagtacagta-cacaattgtagtttgctgcagcctccaactcctgggctccagtgc--------------ccctgg------agtagctgggactacaggtgtgcgccatcatgcctgggtagtttttaattta-ttttttgtagagacagggttttgctatg-ttgcccaggctggtcttgaactcctggcttcaagtgatcctccaccttggcttcccaaagtgttgggattataggcgtgagccaccatgactggccC-------A i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128187151 362 + 137757926 ACTTCTTACAATAAA-CCCCAAATACTAAGTAAGTTTGAAAACCT-TAATCAAAtattttattttattttattttattttatttta-----------------t--tttGTTAgagacagggccttgctctgtcactcaggttggagtacagta-cacaattgtagtttgctgcagcctccaactcctgggctccagtgc--------------ccctgg------agtagctgggactacaggtgtgcgccatcatgcctgggtagtttttaattta-ttttttgtagagacagggttttgctatg-ttgcccaggctggtcttgaactcctggcttcaagtgatcctccaccttggcttcccaaagtgttgggattataggcgtgagccaccacgactggccC-------A i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10587837 353 - 16319837 ACTTCTTACAATAAA-CCCCAAATACTAAGTAAGTTTGAAAACCT-TAA---------Atattttattttattttattttatttta-----------------t--tttGTTAgagacggggccttgctctgtcactcaggttggagtacagta-cacaattgtagtttgctgcagcctccaactcctgggctccagtgc--------------ccctgg------agtagctgggactacaggtgtgcgccatcatgcctgggtagtttttaattta-ttttttgtagagacagggttttgctatg-ttgcccaggctggtcttgaactcctggcttcaagtgatcctccaccttggcttcccaaagtgttgggattataggcgtgagccaccacgactggccC-------A i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12209708 351 + 20526591 ACTTCTTACAATAAA-CCCCAAATACTAAGTAAGTTTGAAAACCT-TAATCAAAtattttattttattttatttta------------------------------tttGTTAgagacagggccttgctctgtcactcaggttggagtacagta-tacaattgtagtttgctgcaacctccaactcctgggctccagtgc--------------ccctgg------agtagctgggactacaggtatgcgccatcatgcctgggtagtttttaattta-ttttttgtagagacagggttttgctatg-ttgcccaggctggtcttgaactcctggcttcaagtgatcctccgcctaggcttgccaaagtgttgggattataggcgtgagccaccacgactggccC-------A i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119182647 364 + 128539186 ACTTCTTACAATAAA-CCCCAAATACTAAGTAAGTTTGAAAATCT-TAATCAAAtattttattttattttattttattttatttta-----------------ttGtttgttagagacagggccttgctgtgtcactcaggttggagtacagtg-cacaattgtagtttgctgcagcctccagctcctgggctccagcgc--------------ccctgg------agtagctgggactacaggtgtgcaccatcatgcctgggtagtttttaatgta-ttttttgtagagacagggttttgctatg-ttgcccaggctggtcttgaactcctggcttcaagtgatcctccgccttggcttcccaaagtgttgggattataggcgtgagccaccatgactggccC-------A i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 495501 381 + 6255621 ACTTCTTACAATAAA-CCCCAAATACTAAGTAAGTTTGAAAACCT-TAATCAAGtattttattttattttattttattttattttattttattttattttattttatttGTTAgagacagggccttgctctgtcactcaggttggagtacagta-cacaattgtagttcgctgcagcctccaactcctgggctccagtgc--------------ccctgg------agtagctgggactacaggtgtgcgccatcatgcctgggtagtttttaattta-ttttttgtagagacagggttttgctatg-ttgcccaggctggtcttgaactcctggcttcaagtgatcctccgcctacgcttgccaaagtgttgggattataggcgtgagccaccacgactggccC-------A i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4558417 359 - 8658521 ACTTCTTACAATAAA-CCCCAAATACTAAGTAAGTTTGAAAACCT-TAATCAAATGttttattttatttta--ttattttatttta--------------------ttttatAgagacagggccttgctctgtcactcaggttggagtacagtg-cacaattgtagttcgctgcagcctccaactcctgggctccagtgc--------------ccctgg------agtagctgggactacaggcgtgcgtcatcatgcctgggtagtttttaattta-ttttttgtagagacagggttttgctatg-ttgcccaggctggtcttgaactcccggcttcaagtgatcctccgccttggcttcccaaagtgttgggattgcaggcgtgagccaccacgactggccC-------A i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114763490 351 + 124281992 ttttttAACAATAAACCCCAGAATACCAAGTAAGTTTGAAAACCTACAATCAAGTGttttatttcatttta-----------------------------------ttttttagagaaagggccttgctttgtcactcaggctgcagtacagtggcactatcctagttcgc-------------tcctgggctccagtgctgggactttagggcccctgg------ggtagctgggacttcaggcacacgtcatcatgcctggctagtttttaattta-ttttttgtagagacagggttttgctatatttgcccaggctggtcttgaatttctggtttcaagtgatcctctgccttggcctcccaaagtgttgggattacaggcaggagccactgcaactggccT-------G i calJac3.chr9 I 16 C 0 s saiBol1.JH378194 407709 360 - 9212255 aCTTCTTACAGTAAA-CCCAAAATACCAAGTAAGTTTAAAAACCT---ATCAAATGttttactttattttg-----------------------------------ttttttagagacagggccttgctctgtcactcaggctggagtacgctggcgttatcatagttcgctgcagcctccatttcctcggctccagtgctgggactttaggacccctgg------agtagctgggacttcaggcacgcatcatcatgcctggctagtttacaatttatttttttgtagagacaggattttgctata-ttgcccaggctggtcttgaatttctggtttcaagtgatcctctgctttggcctcccaaagtgttgggattacaggcgggagccaccgcgactggccT-------G i saiBol1.JH378194 I 9 C 0 s cebCap1.NW_016107484v1 2821308 362 + 4466143 ACTTCTTACAGTAAA-CCCAAAATACCAAGTTGGTTTAAAAACCTATAATCAAATGttttatttcatttta-----------------------------------ttttttagaggcagggcctcgctctctcactcaggctggagtatgctgtcgttatcatagttcgctgcagcccccatctcctcggctccagtgctgggacttcaggggccctgt------agtagctgggacttcaggcacatgtcatcatgcctggctagtttataattta-ttttttgtagagacagggttttgttata-ttgcccaggctggtcttgaatttctggtttcaagtgatcctcctccttggtctcccaaagtgttgggattacaggcgggagccacagcgactggccT-------G i cebCap1.NW_016107484v1 I 22 C 0 s aotNan1.NW_018491581v1 1517573 362 + 5364348 actttttACAATAAA-CCCAAAATACCAAGTAAGTTGGAAAACCTACAATCAAATGttttattttatttta-----------------------------------tgttttagagacagggccttgctctgtcactcaggctggagtacagtggcactatcatagttcgctgcagcctctatctcctgggctccagtgctgggactttagggtccctag------agtacctgggacttcaggcgcacgtcatcatgcctggctagtttttaattta-ttttttgaagagacagggttttgctata-ttgcccaggctggtcttgaatttctggtttcaagtgatcctccgccttggcctcccaaagcgttgggattacaggcgggagccactgcgactggccT-------G i aotNan1.NW_018491581v1 I 12 C 0 s otoGar3.GL873618 4250273 299 + 7922563 ----------acagg-cgcc-------------------aagccC---------------Attttcattta-----------------------------------tttttttgagacagagtctcactctgatgcccaagttagagtgctgtc-----agcctagctcacagcaacctcaaaatcctgggcgcaagcagtcctcctg------ccctggcctccaagtagctgggtctacaga-gtctaccactatgcctgcctcattttc-------ctatttttagagacagagtctcactc---ttgctcaggctggtctcaaactcctaaatgcagacagtcctc------------ccatagtgccaggattacaggcctgagccaccatacctggccCTGATGAAG i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9428020 246 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e dasNov3.JH568189 790047 1966 - 1116856 I e canFam3.chr26 33118573 241 - 38964690 I a score=27846.000000 s hg38.chr12_KI270834v1_alt 18791 2 + 119498 AA s panTro5.chr12 127305011 2 + 137163284 AA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125655961 2 + 135337776 AA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8168845 2 - 8369578 AA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97816961 2 + 106955855 AA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123939375 2 + 133663169 AA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128187513 2 + 137757926 AA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10588190 2 - 16319837 AA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12210059 2 + 20526591 AA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119183011 2 + 128539186 AA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 495882 2 + 6255621 AA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4558776 2 - 8658521 AA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114763841 2 + 124281992 AA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 408069 2 - 9212255 AA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2821670 2 + 4466143 AA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1517935 2 + 5364348 AA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4250572 2 + 7922563 AA i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 792013 2 - 1116856 AA i dasNov3.JH568189 I 1966 C 0 e micMur3.chr21 9428020 246 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I e canFam3.chr26 33118573 241 - 38964690 I a score=112714.000000 s hg38.chr12_KI270834v1_alt 18793 12 + 119498 ACATTTAAAAAG s panTro5.chr12 127305013 12 + 137163284 ACATTTAAAAAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125655963 12 + 135337776 ACATTTAAAAAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8168847 12 - 8369578 ACACTTAAAAAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97816963 12 + 106955855 ACATTTAAAAAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123939377 12 + 133663169 ACATTGAAAAAG i rheMac8.chr11 C 0 I 327 s macFas5.chr11 128187515 12 + 137757926 ACATTGAAAAAG i macFas5.chr11 C 0 I 325 s macNem1.NW_012010578v1 10588192 12 - 16319837 ACATTGAAAAAG i macNem1.NW_012010578v1 C 0 I 329 s cerAty1.NW_012001186v1 12210061 12 + 20526591 ACATTGAAAAAG i cerAty1.NW_012001186v1 C 0 I 333 s chlSab2.chr11 119183013 12 + 128539186 ACATTGAAAAAG i chlSab2.chr11 C 0 I 325 s manLeu1.NW_012103587v1 495884 12 + 6255621 ACATTGAAAAAG i manLeu1.NW_012103587v1 C 0 I 328 s colAng1.NW_012116043v1 4558778 12 - 8658521 ACATTGAAAAAG i colAng1.NW_012116043v1 C 0 I 336 s calJac3.chr9 114763843 11 + 124281992 ACATTTAAAAA- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 408071 11 - 9212255 ACATTTAAAAA- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2821672 11 + 4466143 ACATTTAAAAA- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1517937 11 + 5364348 ACATTTAAAAA- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4250574 12 + 7922563 ATATTTTAAAAG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33118814 12 - 38964690 ATATTTTAGAAG i canFam3.chr26 I 241 C 0 s dasNov3.JH568189 792015 12 - 1116856 ATATTTTaaact i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9428020 246 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I a score=1695872.000000 s hg38.chr12_KI270834v1_alt 18805 179 + 119498 TGATCTGGCATCTTTCTGTGCAGTCAGGTACCTGCAACA-TTTTTTGTGGAGAGAGGCA-----CCCTCGGCCTGGAATTTTACTACCTAGTCGGAGATAGGTAACATCTTACTCTCACCTAAGTCTTACTCCTCTGACTTACTTAGGTAAACAAATACAGGCACTTGCTTACCTAAAACCTTTA s panTro5.chr12 127305025 179 + 137163284 TGATCTGGCATCTTTCTGTGCAGTCAGGTACCTGCAACA-TTTTTTGTGGAGAGAGGCA-----CCCTCGGCCTGGAATTTTACTACCTAGTCGGAGATAGGTAACATCTTACTCTCACCTAAGTCTTACTCCCCTGACTTACTTAGGTAAACAAATATAGGCACTTGCTTACCTAAAACCTTGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125655975 179 + 135337776 TGATCTGGCATCTTTCTGTGCAGTCAGGTACCTGCAACA-TTTTTTGTGGAGAGAGGCA-----CCCTCGGCCTGGAATTTTACTACCTAGTCGGAGATAGGTAACATCTTACTCTCACCTAAGTCTTACTCCCCTGACTTACTTAGGTAAACAAATATAGGCACTTGCTTACCTAAAACCTTGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8168859 179 - 8369578 TGATCTGGCATCTTTCTGTGCAGTCAGGTCCCTGCAACA-TTTTTTGTGGAGAGAGGCA-----CCCTCGGCCTGGAATTTTACTGCCTAGTCGGAGATAGGTAACATCTTACTCTCACGTAAGTCTTACTCCGCTGACTTACTTAGGTAAACAAATATAGGCACTTGCTTACCTAAAACCTTTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97816975 179 + 106955855 TGATCTGGCATCTTTCTGTGCAGTCAGGTACCTGCAACA-TTTTTTGTGGCGAGAGGCA-----CCCTTGGCCTGGAATTTTACTACCTAGTCAGAGATAGGTAACATCTTACTCTCACCTAAGTCTTACTCCTCTGACTTACTTAGGTAAACAAATGTAATCACTTGCTTACCTAAAACGTTTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123939716 175 + 133663169 TGATCTGGCATCTTTCTATGCAGTCAGGTACCTGCAACA-TTTTTTGTGGCGAGAGGCA-----CCCTCGGCCTGGAATTTTACTACCTAGTCAGAGATAGGTAACATCTTACTCCTACCTAAGTCTTACTCCTCTG----ACTTAGGTAAACAAATGCAGGTACTTGCTTACCTGAAGCcttta i rheMac8.chr11 I 327 C 0 s macFas5.chr11 128187852 175 + 137757926 TGATCTGGCATCTTTCTATGCAGTCAGGTACCTGCAACA-TTTTTTGTGGCGAGAGGCA-----CCCTCGGCCTGGAATTTTACTACCTAGTCAGAGATAGGTAACATCTTACTCCTACCTAAGTCTTACTCCTCTG----ACTTAGGTAAACAAATGCAGGTACTTGCTTACCTGAAGCcttta i macFas5.chr11 I 325 C 0 s macNem1.NW_012010578v1 10588533 175 - 16319837 TGATCTGGCATCTTTCTATGCAGTCAGGTACCTGCAACA-TTTTTTGTGGCGAGAGGCA-----CCCTCGGCCTGGAATTTTACTACCTAGTCAGAGATAGGTAACATGTTACTCCTACCTAAGTCTTACTCCTCTG----ACTTAGGTAAACAAATGCAGGTACTTGCTTACCTGAAGCCTTTA i macNem1.NW_012010578v1 I 329 C 0 s cerAty1.NW_012001186v1 12210406 175 + 20526591 TGATCTGGCATCTTTCTATGCAATCAGGTACCTGCAACA-TTTTTTGTGGCGAGAGGCA-----CCCTCGGCCTGGAATTTTACTACCTAGTCAGAGATAGGTAACATCTTACTCCTACCTAAGTCTTACTCCTCTG----ACTTAGGTAAACAAATGCAGGTACTTCCTTACCTGAAGCCTTTA i cerAty1.NW_012001186v1 I 333 C 0 s chlSab2.chr11 119183350 175 + 128539186 TGATCTGGCATCTTTCTATGCAGTCAGGTACCTGCAACA-TTTTTTGTGGCGAGAGGCA-----CCCTCGGCCTGGAATTTTACTACCTAGTCAGAGATAGGTAACATCTTACTCCTACCTAAGTCTTACTCCTCTG----ACTTAGGTAAACAAATGCAGGCACTTGCTTACCTGAAGCcttta i chlSab2.chr11 I 325 C 0 s manLeu1.NW_012103587v1 496224 175 + 6255621 TGATCTGGCATCTTTCTATGCAGTCAGGTACCTGCAACA-TTTTTTGTGGCGAGAGGCA-----TCCTCGGCCTGGAATTTTACTACCTAGTCAGAGATAGGTAACATCTTACTCCTACCTAAGTCTTACTCCTCTG----ACTTAGGTAAACAAATGCAGGCACTTGTTTACCTGAAGCCTTTA i manLeu1.NW_012103587v1 I 328 C 0 s colAng1.NW_012116043v1 4559126 179 - 8658521 TGATCTGGCATCTTTCTATGCAGTCAGGTACTTGCAACA-TTTTTTGTGGAGAGAGGCA-----CCCTTGGCCTGGAATTTTACTACCTAGTCAGAGATAGGTAACATCTTACTCCTGTCTAAGTCTTACTCCTCTGACTTACTTAGGTAAACAAATGTAGGCACTTGCTTACCTGAAGCcttta i colAng1.NW_012116043v1 I 336 C 0 s calJac3.chr9 114763854 174 + 124281992 TGATCTGACATCTTTCTGGGGAATTAGGTACCTGCAACA-TTTTTTGTGGGGAGGGGTA-----TCC-TGGTCTGGTATTTGACTACCTAGTCAGAGGTAGGTAACATCTTACTC----CTAAGTCTTACTCCTCTGACTCACTTAGGTAAACAAATGTAGGCACTTGCTTACCTAAAGCCTTTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 408082 157 - 9212255 TGATCTGACATCTTTCTGTGGAGTTAGGTACCTGTAACA-TTTTTTGTGGGGAGGGGTA-----CCC-CGGCCTGGTATTTTACTATCTAGTCAGAGGTGGGTAACATCCTACTC----CCAAGT-----------------CTTAGGTAAACAAATGTAGGCACTTGCTTACCTAAAGCCTTCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2821683 170 + 4466143 TGATGTGACGTCTTTCTGTGGAGTTAGGTACGTGCAACATTTTTTTGTGGGGAGGGGTA-----CCC-CGAACTGGTATTT-ACTACCTTGTCAGAGGCAGGTAAAACCCTACTC----CTAAGTCTTACTCCTCTGA----CTTAGGTAGACAAATGTAGGCACTTGCTTACCTAAAGCCTTTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1517948 174 + 5364348 TGATCTGACATCTTTCTGTGGAGTTAGGTACCTGCAACA-TTTTTTGTGGGGAGGGGTA-----CCC-CGGCCTGGTATTTTACTACCTTGTCAGAGGTAGGTAACATCCTACTC----CTAAGTCTTACTCCTCTGACTCGCTTAGGTAAACAAATGTAGGCACTTGCTTACCTAAAGCCTTTA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4250586 122 + 7922563 TGACCTGGCATCTTTCTATACAGGCAGGTGCCTGCAGCA-TTTTCT---TGGAGGGGGA-----TCTTTGGTCTAGTATTTTACTAAGTGGTCAGAG-------------TACTCT----------------------------------------TATTGTCATTTGCTTACTTAAA-CCTTTA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33118826 116 - 38964690 TCATCTAGCATCTTTCTGCACAGTCA-----CCTCTACC-TCTGTTGTGTGTGCATGTC-----GCC--GGGCTTGTATTTTCCTGTCCAGTGGAAGA----------GTTACT----------------------------------------------GTCATTTGCTTACCTAGAGCCCGTA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 792027 123 - 1116856 -tagctgccatttttctacccaggcaagtttct-------ctctgtgtgtatatgtgtgtgtgttcattggcctgatatttcattatttagccagaag------------------------agtcttact------------------------------gtcattgcctccctgaagctttta i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9428020 246 - 31815103 I e mm10.chr5 124773989 868 + 151834684 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I a score=1198395.000000 s hg38.chr12_KI270834v1_alt 18984 103 + 119498 CTTTG----CCCT------------CCCTATTCCAGATCAAAGAAATAAATTCCTGAAGGGA--CTGTTTTGGGTACCAGTCCCCGGAT-----------------TGAT--CAGAGCCTCTTACAGGTGT-------------GCGTTTTCT s panTro5.chr12 127305204 103 + 137163284 CTTTG----CCCT------------CCCTATTCCAGATCAAAGAAATAAATTCCTGAAGGGA--CTGTTTTGGGTACCAGTCCCCAGAT-----------------TGAT--CAGAGCCTCTTACAGGTGT-------------GCGTTTTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125656154 103 + 135337776 CTTTG----CCCT------------CCCTATTCCAGATCAAAGAAATAAATTCCTGAAGGGA--CTGTTTTGGGTACCAGTCCCCAGAT-----------------TGAT--CAGAGCCTCTTACAGGTGT-------------GCGTTTTCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8169038 102 - 8369578 CTTTG----CCCT------------CCCTATTCCAGATCAAAG-AATAAATTCCTGAAGGGA--CTGTTTTGGGTACCAGTCCCCGGAT-----------------TGAT--CAGAGCCTCTTACAGGTGT-------------GCGTTTTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97817154 103 + 106955855 CTTTG----CCCT------------CCCTATTCCAGATCAAAGAAATAAATTCCTGAAGGGA--CTGTTTTGGGTACCAGTCCTCGGAT-----------------TGAT--CAGAGCCTTTTACAGGTGT-------------GTGTTTTCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123939891 103 + 133663169 ctttg----ccct------------tcctattccagatcaaagaaataaattcctgaaggga--ctgttttgggtaccagtccccagAT-----------------TGAT--CAGAGCCTCTTACACGTGT-------------GCGTTCTCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128188027 103 + 137757926 ctttg----ccct------------tcctattccagatcaaagaaataaattcctgaaggga--ctgttttgggtaccagtccccagAT-----------------TGAT--CAGAGCCTCTTACACGTGT-------------GCGTTCTCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10588708 103 - 16319837 CTTTG----CCCT------------TCCTATTCCAGATCAAAGAAATAAATTCCTGAAGGGA--CTGTTTTGGGTACCAGTCCCCGGAT-----------------TGAT--CAGAGCCTCTTACACGTGT-------------GCGTTCTCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12210581 103 + 20526591 CTTTG----CCCT------------TCCTATTCCAGATCAAAGAAATAAATTCCTGAAGGGA--CTGTTTTGGGTACCAGTCCCCAGAT-----------------TGAT--CAGAGCCTCTTACACGTGT-------------GCGTTCTCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119183525 103 + 128539186 ctttg----ccct------------tcctattccagatcaaagaaataaattcctgaaggga--ctgttttgggtaccagtccccagAT-----------------TGAT--CAGAGCCTCTTACACGTGT-------------GCGTTCTCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 496399 103 + 6255621 CTTTG----CCCT------------TCCTATTCCAGATCAAAGAAATAAATTCCTGAAGGGA--CTGTTTTGGGTACCAGTCCCCAGAT-----------------TGAT--CAGAGCCTCTTACACGTGT-------------GCGTTCTCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4559305 103 - 8658521 ctttg----ccct------------gcctattccagatcaaagaaataaattcctgaaagga--ctgttttgggtaccagtccctggAT-----------------TGAG--CAGAGCCTCTTACACGTGT-------------GCATTCTCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114764028 103 + 124281992 CTTTG----CCCT------------CCCTATTCCAGATCAAAGAAATAAATTCCCGAAGGGA--CTGTTTTTGGTACCAGTCCCTGGAC-----------------TGAT--CAGAGCCTCTTTCAGGTGT-------------GCGTTTTCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 408239 103 - 9212255 CTTTG----CCCT------------TCCTATTCCAGATCAAAGAAATAAATTCCCAAAGGCA--CTGTTTTTGGTGCCCGTCCCTGGAC-----------------TGAT--CAGAGCCTCTTTCAGGTGT-------------GCGTTTTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2821853 107 + 4466143 CTTTGCCCCCCCC------------CCCCACtccagatcaaagaaataaattcctgaaggca--ctgtttttggtaccagtccctggAC-----------------TGAT--GAGAGCCTCTTTCAGGTGT-------------GCGTTTTCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1518122 103 + 5364348 CTTTG----CCCC------------CGCTATTCCAGATCAAAGAAATAAATTCCCAAAGGGA--CTGTTTTTGGTACCAGTCCCTGGAC-----------------TGCG--CAGAGCCTCTTTCAGGTGT-------------GCGTTTTCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4250708 115 + 7922563 CTTTG----TGGTGAAGTACTTTGGTCCTATTCCAGATCCAAGATGTGAAGTCCTCGTGGGA--CTATTTTTGGTGCCAGTCCTTGGGT-----------------TGGT--CAAAGTCTCTTAAAAGTGT-------------GCTTCCTCC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124774857 114 + 151834684 CTTCA----TGCT------------TCCTGTTCCTGGCCAGACATGCGAACCACTGCCG-----CTGACTTCCAGGGCAGTCTCTAG-C-----------------TGATCCCAGGGTCTGTTAAGTCTGTCTGTGACTGGCTCGCTTTCCCT i mm10.chr5 I 868 C 0 s canFam3.chr26 33118942 100 - 38964690 TGTTG----CCTT------------CTCCATTATAGATCAAAGAAACACATT-CTGACGGCAACCGGTATCTGGTGTCGGTCCCTGG---------------------TA--CAAGATCTCAAACAGGCGT-------------GCTTTTTCC i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 792150 119 - 1116856 ctttg----cctt------------ccctagtccagattaaaaaaatAACTTCTTTATGGGA--CTGTTCCCT-TATCACTCCCAGTATGTGTATGGGGGAGGGGACGGC--GGGAATCTCTTAAAGATGT-------------GCTTTTTAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9428020 246 - 31815103 I e proCoq1.NW_012154285v1 6680640 877 - 9870158 I a score=5514765.000000 s hg38.chr12_KI270834v1_alt 19087 287 + 119498 GCAGAGTCGACTGGATGCTCCTGTACCAGGGCATGGTGGTGCTGGCCGCTAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCACAAAGCGCAAAAAGGGGAGAAGCAGGCCATGAAGAACTATGGCAGGAAAATGCACCGGCAGATCGATGAGTTGGTAACGCGCATCACCATGCCGCTAAGCAAAAACGACAGGAAAAAATACAACACTGTTCTCATCATTGATGTGCATGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAGGTGAGCATTTTCC s panTro5.chr12 127305307 287 + 137163284 GCAGAGTCGACTGGATGCTCCTGTACCAGGGCATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACATCTTCCACAAAGCGCAGAAAGGGGAGAAGCAGGCCATGAAGAGCTACGGCAGGAAAATGCACCGGCAGATCGATGAGTTGGTAATGCGCATCACCATGCCGCTAAGCAAAAACGACAGGAAAAAATACAACACTGTTCTCATCATTGATGTGCACGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAGGTGAGCATTTTCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125656257 287 + 135337776 GCAGAGTCGACTGGATGCTCCTGTACCAGGGCATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACATCTTCCACAAAGCGCAGAAAGGGGAGAAGCAGGCCATGAAGAGCTACGGCAGGAAAATGCACCGGCAGATCGATGAGTTGGTAATGCGCATCACCATGCCGCTAAGCAAAAACGACAGGAAAAAATACAACACTGTTCTCATCATTGATGTGCACGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAGGTGAGCATTTTCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8169140 287 - 8369578 GCAGAGTCGACTGGATGCTCCTGTACCAGGGCATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCACAAAGTGCAAAAAGGGGAGAAGCAGGCCATGAAGAACTACGGCAGGAAAATGCACCGGCAGATCGATGAGTTGGTAACGCGCATCAGCATGCCGCTAAGCAAAAACGACAGGAAAAAATACAACACTGTTCTCATCATTGATGTGCACGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAGGTGAGCATTTTCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97817257 287 + 106955855 GCAGAGTCGACTGGATGCTCCTGTACCAAGGCATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTTCACAAAGTGCAAAAAGGGGAGAAGCAGGCCATGAAGAACTATGGCAGGAAAATGCACCGGCAGATCGATGAGTTGGTAACACGCATCACCATGCCGCTAAGCAAAAACGACAGGAAAAAATACAACACCGTTCTTATCATTGACGTGCACGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAGGTGAGCATTTTCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123939994 287 + 133663169 GCAGAGTCGACTGGATGCTCCTGTACCAAGGCATGGTGGTGCTGGCTGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCACAAAGTGCAAAAAGGGGAGAAGCAGGCCATGAAGAACTACGGCAGGAAAATGCACCGACAGATCGATGAGTTGGTAACGCGCATCACCATGCCCCTGAGCAAAAACGACAGGAAAAAATACAACACTGTTCTCATCATTGACGTGCACGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAGGTGAGCATTTTCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128188130 287 + 137757926 GCAGAGTCGACTGGATGCTCCTGTACCAAGGCATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCACAAAGTGCAAAAAGGGGAGAAGCAGGCCATGAAGAACTACGGCAGGAAAATGCACCGACAGATCGATGAGTTGGTAACGCGCATCACCATGCCCCTGAGCAAAAACGACAGGAAAAAATACAACACCGTTCTCATCATTGACGTGCACGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAGGTGAGCATTTTCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10588811 287 - 16319837 GCAGAGTCGACTGGATGCTCCTGTACCAAGGCATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCACAAAGTGCGAAAAGGGGAGAAGCAGGCCATGAAGAACTACGGCAGGAAAATGCACCGACAGATCGATGAGTTGGTAACGCGCATCACCATGCCCCTGAGCAAAAACGACAGGAAGAAATACAACACCGTTCTCATCATTGACGTGCACGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAGGTGAGCATTTTCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12210684 287 + 20526591 GCAGAGTCGACTGGATGCTCCTGTACCAGGGCATGGTGGTGCTGGCTGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCACAAAGTGCAAAAAGGGGAGAAGCAGGCCATGAAGAACTACGGCAGGAAAATGCACCGACAGATCGATGAGTTGGTAACGCGCATCACCATGCCCCTGAGCAAAAACGACAGGAAAAAATACAACACCGTTCTCATCATTGACGTGCACGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAGGTGAGCATTTTCG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119183628 287 + 128539186 GCAGAGTCGACTGGATGCTCCTGTACCAAGGCATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCACAAAGTGCAAAAAGGGGAGAAGCAGGCCATGAAGAACTACGGCAGGAAAATGCACCGACAGATCGATGAGTTGGTAACGCGTATCACCATGCCCCTGAGCAAAAACGACAGGAAAAAATACAACACCATTCTCATCATTGACGTGCACGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAGGTGAGCATTTTCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 496502 287 + 6255621 GCAGAGTCGACTGGATGCTCCTGTACCAGGGCATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCACAAAGTGCAAAAAGGGGAGAAGCAGGCCATGAAGAACTACGGCAGGAAAATGCACCGACAGATCGATGAGTTGGTAACGCGCATCACCATGCCCCTGAGCAAAAACGACAGGAAAAAATACAACACCGTTCTCATCATTGACGTGCACGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAGGTGAGCATTTTCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4559408 287 - 8658521 GCAGAGTCGACTGGATGCTCCTGTACCAAGGCATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTAGAAGATGTCTTCCACAAAGTGCAAAAAGGGGAGAAGCAGGCCATGAAGAGCTACGGCAGGAAAATGCACCGACAGATCGATGAGCTGGTAACGCGCATCACCATGCCCCTGAGCAAAAACGACAGGAAAAAATACAACACCGTTCTCATCATTGACGTGCACGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAGGTGAGCATTTTCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114764131 287 + 124281992 GCAGGGTCGATTGGATGCTCCTGTACCAAGGCATGGTGGTGCTAGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCGGAAAGTGCAGAAAGGGGAGAAGCAGGCCATGAAGAACTACGGCAAGAAAATGCACCGGCAGATCGATGAGCTGGTAACTCGCATCACCACGCCCCTGAGCAAAAACGACAGGAAAAAATACAACACCGTTCTCATCATCGACGTGCACGCCAGAGACATCGTTGATTCTTTCATAAGAGGCAGGTGGGCATTTTCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 408342 287 - 9212255 GCAGGGTTGATTGGATGCTCCTGTACCAAGGCATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCGGAAAGTGCAGAAAGGGGAGAAGCAGGCCATGAAGAACTACGGCAAGAAAATGCACTGGCAGATCGATGAGCTGGTGACGCGCATCACCATGCCCCTGAGCAAAAACGACAGGAAAAAATACAACACCGTTCTCATCATCGACGTGCACGCCCGAGACATCGTTGATTCTTTCATAAGAGGCAGGTGGGCATGTTCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2821960 287 + 4466143 GCAGGGTTGATTGGATGCTCCTGTACCAAGGCATGGTGGTGCTAGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCGGAAGGTGCAGAAAGGGGAGAAGCAGGCCATGAAGAACTACGGCAAGAAAATGCACCGGCAGATTGATGAGCTGGTAACTCGCATCACCATGCCCCTGAGCAAAAACGACAGGAAAAAATACAACACCGTTCTCATCATCGACGTGCACGCCAGAGACATCGTGGATTCTTTCATAAGAGGCAGGTGGGCATTTTCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1518225 287 + 5364348 GCAGGGTTGATTGGATGCTCCTGTACCAAGGCATGGTGGTGCTAGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCGGAAAGTGCAGAAAGGGGAGAAGCAGGCCATGAAGAACTACGGCAACAAAATGCACCGGCAGATTGACGAGCTGGTAACTCGCATCACCATGCCCCTGAGCAAAAACGACAGGAAAAAATACAACACCGTTCTCATCATCGACGTGCACGCCAGAGACATCGTTGATTCTTTCATAAGAGGCAGGTGGGCATTTTCC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9428266 287 - 31815103 GCAGAGTCGACTGGATGCTCCTGTACCAGGGCATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAGGACGTCTTCCGCAAGGTGCAGGAAGGGGAGAAGCAGGCCATGAAGAACTACGGCCGGAAAATGCACCGGCAGATCGACGAGCTGGTGACGCGCATCACGATGCCCTTGACCAAAAACGACAGGAAGAAATACAACACCGTCCTCATCATCGACGTGCACGCCAGAGACATCGTGGACTCCTTCATCAGAGGCAGGTGAGTGCCTCCC i micMur3.chr21 I 246 I 53 s proCoq1.NW_012154285v1 6681517 287 - 9870158 GCAGGGTCGACTGGATGCTCCTGTACCAGGGCATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAGGACGTCTTCCGCAAAGTGCGGGACGGGGAGAAGCAGGCCATGAAGAACTACGGCCGGAAGATGCACCGGCAGATCGATGAGTTGGTGACGCGCATCACCACGCGCTTAAGCAAAAACGACAGGAAGAAATACAACACCGTCCTCATCATCGACGTGCACGCCAGAGACATCGTGGATTCTTTCATAAGGGGCAGGTGAGCGTCTTCC i proCoq1.NW_012154285v1 I 877 C 0 s otoGar3.GL873618 4250823 287 + 7922563 GCAGAGTTGACTGGATGCTCCTATACCAAGGCATGGTGGTGCTGGCAGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCACAAAGTGCAGGCAGGGGAGAAGCAGGCCATGAAGAACTATGGCAGGAAAATGCACCGGCAAATCGATGAGCTGGTAACTCGTATCACCATGTCCTTAAGCAAAAACGACAGGAAGAAATACAATACTGTTCTCATTATCGACGTGCATGCCAGGGATATCGTGGATTCTTTCATCAGAGGCAGGTGAGCCTCTTCC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124774971 287 + 151834684 GCAGGGTGGACTGGATGCTGCTGTACCAAGGCATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAAGTGGAAGATGTCTTCAACAAGGTCAAGCAAGGGGACAAGCAGGCCATGAAGAACTACGGCAAGAAGATGCACAGCCAGATTGATGACCTGGTGACGCGGATCACCATGGAGCTGAGCAAAAACGACAGGAAGAAATACAACACTGTCCTGATCATCGATGTCCACGCCCGGGACATCGTGGATTCCTTCATCCGGGGCAGGTGGGTCCCATCC i mm10.chr5 C 0 I 1 s canFam3.chr26 33119043 287 - 38964690 TTAGAGTCGACTGGATGCTCCTATATCAAGGGATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAGGACGTCTTCCACAAAGTGCAGAAGGGGGAGAAGCAGGCCATGAAGGAGTACGGCAAGAAAATGCACCAGCAGATTGATGAGTTGGTCACTCGGATCACCATGCCCTTAAACAAAAATGACAGAAAGAAATACAACACGGTTCTCATCATTGACGTGCATGCCAGAGATATAGTCGATTCTTTCATAAGAGACAGGTCGGGACCTGTG i canFam3.chr26 I 1 I 12 s dasNov3.JH568189 792269 287 - 1116856 GTAGGGTCGACTGGATGCTCCTGTACCAAGGCATGGTGGTGCTGGCTGCATGCCAGGTGTGGTGGACCTGGGAGGTGGAAGATGTCTTCAACAAAATAAAACAAGGGGAGAAGCAGGCCATGAAGCACTATGGCAGAAAAATGCACCGGCAAATTGATGAGTTGGTGACTCGGATCACTATGCACTTGAGCAGAAATGACAGGAAAAAATATAACACAGTTCTCATCATCGATGTGCACGCCAGAGACATAGTGGATTCTTTCATAAGAGGCAGGTGAGGACCTCTT i dasNov3.JH568189 C 0 C 0 a score=682186.000000 s hg38.chr12_KI270834v1_alt 19374 59 + 119498 GGGGTCACTGGCATTTCAAAAGGGACCCTTTGTGGTCCGCTGATCTGTCT--CAACGGTTT s panTro5.chr12 127305594 59 + 137163284 GGGGTCACTGGCATTTCAAAAGGGACCCTTTGTGGTCCGCTGGTCTGTCT--CAACGGTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125656544 59 + 135337776 GGGGTCACTGGCATTTCAAAAGGGACCCTTTGTGGTCCGCTGGTCTGTCT--CAACGGTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8169427 59 - 8369578 GGGGTCACTGGCATTTCAAAAGGGACCCTTTGTGGTCCGCTGATCTGTCT--CAACGGTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97817544 59 + 106955855 GGGGTCACTGGCATTTCAAAAGGGACCCTTTGTGGTCCACTGGTCTGTCT--CAACAGTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123940281 59 + 133663169 GGGGGCACTGGCATTTCAAAAGGGACCCTTCGTGGTCCTCTGGTCTGTCT--CAGTGGTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128188417 59 + 137757926 GGGGGCACTGGCATTTCAAAAGGGACCCTTCGTGGTCCTCTGGTCTGTCT--CAATGGTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10589098 59 - 16319837 GGGGGCACTGGCATTTCAAAAGGGACCCTTCGTGGTCCTCTGGTCTGTCT--CAATGGTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12210971 59 + 20526591 GGGGGCACTGGCATTTCAAAAGGGACCCTTCGTGGTCCGCTGGTCTGTCT--CAATGGTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119183915 58 + 128539186 -GGGGCACTGGCATTTCAAAAGGGACCCTTCGTGGTCCGCTGGTCTGTCT--CAATGGTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 496789 59 + 6255621 GGGGGCACTGGCATTTCAAAAGGGACCCTTCGTGGTCCTCTGGTCTGTCT--CAATGGTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4559695 59 - 8658521 GGGGGCACTGGCATTTCAAAAGGGACCCTTCGTGGTCCGCTGGTCTGTCT--CAATGGTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114764418 59 + 124281992 GGGGGCACTGGCATTTCAAAAGGGACCCTTTGTGGTCCTCTGGTCTCCCT--CAACGGTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 408629 59 - 9212255 GGGGGCACTGGCGCTCCAAAAGGGACCCTTTGTGGTCCTTTGATCTCCCT--CAACGGTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2822247 59 + 4466143 AGGGGCACTGGCATTTCAAAAGGGACCCTTTGTGGTCCTCTGACCTCCCT--TAACGGTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1518512 59 + 5364348 GGGGGCACTGGCATTTCAAAAGGGACCCTTTGTGGTCCTCTGATCTCCCT--CAACGGTTT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6681804 59 - 9870158 GCGGCCACCTGCGTTTCAAAACGGACCCTTTGGTGTTCTCTGGTCCCCAT--CAACCGTCC i proCoq1.NW_012154285v1 C 0 I 2 s otoGar3.GL873618 4251110 59 + 7922563 AAGGGCACCTGTGTTTCAAACCAGACTCTTGGTTGTTCTCTGGTCCTGCT--CAACTGCTC i otoGar3.GL873618 C 0 I 2 s mm10.chr5 124775259 58 + 151834684 TGGGACACTGGGATTGCTTCACTG---TTCTGTCCTTCTGTGGTCTGCCCAGCGATGGCTT i mm10.chr5 I 1 C 0 s canFam3.chr26 33119342 51 - 38964690 GGGGGCA---GCACGTCCCAGGGCGTCCACCAC--CTTGCTTGTTTTCCT--CGACGT--- i canFam3.chr26 I 12 C 0 s dasNov3.JH568189 792556 57 - 1116856 -AGGGCACTGGAGCATC-AAGTTCATTCCTTATCCACCTTTGACCCTCCT--CAGCCAACT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9428553 53 - 31815103 I a score=4000473.000000 s hg38.chr12_KI270834v1_alt 19433 218 + 119498 ------------------CCACT---TC--CTCCACCTTTCTTGC----------------------------CGTCCAGTATCCTGGAGGCCCGAGAGTTTGACTGGGAAAGTCAGTTGCGGTTTTATTGGGACCGGGAGCCGGATGAGCTGAACATCCGCCAGTGCACGGGAACCTTTGGCTACGGCTACGAGTACATGGGCCTGAACGGCAGGCTGGTCATCACGCCCCTCACCGATCGGATTTACCTGACGCTCACCCAGGTGAC s panTro5.chr12 127305653 218 + 137163284 ------------------CCACT---TC--CTCCACCTTTCTTGC----------------------------CGTCCAGCATCCTGGAGGCCCGAGAGTTTGAATGGGAAAGTCAGTTGCGGTTTTATTGGGACCGGGAGCCGGATGAGCTGAACATCCGCCAGTGCACGGGAACCTTTGGCTACGGCTACGAGTACATGGGCCTGAACGGCAGGCTGGTCATCACGCCCCTCACCGACCGGATTTACCTGACGCTCACCCAGGTGAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125656603 218 + 135337776 ------------------CCACT---TC--CTCCACCTTTCTTGC----------------------------CGTCCAGCATCCTGGAGGCCCGAGAGTTTGAATGGGAAAGTCAGTTGCGGTTTTATTGGGACCGGGAGCCAGATGAGCTGAACATCCGCCAGTGCACGGGAACCTTTGGCTACGGCTACGAGTACATGGGCCTGAACGGCAGGCTGGTCATCACGCCCCTCACCGACCGGATTTACCTGACGCTCACCCAGGTGAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8169486 218 - 8369578 ------------------CCACT---TC--CTCCACCTTTCTTGC----------------------------GGTCCAGCATCCTGGAGGCCCGAGAGTTTGAATGGGAAAGTCAGTTGCGGTTTTATTGGGACCGGGAGCCGGATGAGCTGAACATCCGCCAGTGCACGGGAACCTTTGGCTACGGCTACGAGTACATGGGCCTGAACGGCAGGCTGGTCATCACGCCCCTCACCGACCGGATTTACCTGACGCTCACCCAGGTGAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97817603 221 + 106955855 ------------------CCACTTCCTC--CTCCATCTTTCTTGT----------------------------GGTCCAGCATCCTGGAGGCCCGAGAGTTTGAATGGGAAAGTCAGTTGCGGTTTTATTGGGACCGGGAGCCGGATGAGCTGAACATCCGCCAGTGCACGGGAACCTTTGGCTACGGCTACGAGTACATGGGCCTGAACGGCAGGCTGGTCATCACGCCCCTCACCGACCGGATTTACCTGACGCTCACCCAGGTGAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123940340 221 + 133663169 ------------------CCACTTCCTC--CTCCACCTTTCTTGC----------------------------GGTCCAGCATCCTGGAGGCCCGAGAGTTTGAATGGGAAAGTCAGTTGCGGTTTTATTGGGACCGGGAGCCGGACGAGCTGAACATCCGCCAGTGCACAGGAACCTTTGGCTACGGATACGAGTACATGGGTCTGAACGGCAGGCTGGTCATCACGCCCCTCACTGACCGGATTTACCTGACGCTCACCCAGGTGAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128188476 221 + 137757926 ------------------CCACTTCCTC--CTCCACCTTTCTTGC----------------------------GGTCCAGCATCCTGGAGGCCCGAGAGTTTGAATGGGAAAGTCAGTTGCGGTTTTATTGGGACCGGGAGCCGGACGAGCTGAACATCCGCCAGTGCACAGGAACCTTTGGCTACGGATACGAGTACATGGGTCTGAACGGCAGGCTGGTCATCACGCCCCTCACTGACCGGATTTACCTGACGCTCACCCAGGTGAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10589157 221 - 16319837 ------------------CCACTTCCTC--CTCCACCTTTCTTGT----------------------------GGTCCAGCATCCTGGAGGCCCGAGAGTTTGAATGGGAAAGTCAGTTGCGGTTTTATTGGGACCGGGAGCCGGACGAGCTGAACATCCGCCAGTGCACAGGAACCTTTGGCTACGGATACGAGTACATGGGTCTGAACGGCAGGCTGGTCATCACGCCCCTCACTGACCGGATTTACCTGACGCTCACCCAGGTGAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12211030 221 + 20526591 ------------------CCACTTCCTG--CTCCACCTTTTTTGT----------------------------GGTCCAGCATCCTGGAGGCCCGAGAGTTTGAATGGGAAAGTCAGTTGCGGTTTTATTGGGACCGGGAGCCGGATGAGCTGAACATCCGCCAGTGCACGGGAACCTTTGGCTACGGATACGAGTACATGGGTCTGAACGGCAGGCTGGTCATCACGCCCCTCACCGACCGGATTTACCTGACGCTCACCCAGGTGAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119183973 221 + 128539186 ------------------CCACTTCCTC--CTCCACCTTTCTTGC----------------------------GGTCCAGCATCCTGGAGGCCCGAGAGTTTGAATGGGAAAGTCAGTTGCGGTTTTATTGGGACCGGGAGCCGGATGAGCTGAACATCCGCCAGTGCACAGGAACCTTTGGTTACGGATACGAGTACATGGGTCTGAACGGCAGGCTGGTCATCACGCCCCTCACCGACCGGATTTACCTGACGCTCACCCAGGTGAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 496848 221 + 6255621 ------------------CCACTTCCTC--CTCCACCTTTCTTGC----------------------------GGTCCAGCATCCTGGAGGCCCGAGAGTTTGAATGGGAAAGTCAGTTGCGGTTTTATTGGGACCGGGAGCCAGATGAGCTGAACATCCGCCAGTGCACGGGAACCTTTGGCTACGGATACGAGTACATGGGTCTGAACGGCAGGCTGGTCATCACGCCCCTCACCGACCGGATTTACCTGACGCTCACCCAGGTGAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4559754 221 - 8658521 ------------------CCACTTCCTC--CTCCACCTTTCTTGC----------------------------GGTCCAGCATCCTGGAGGCCCGAGAGTTTGAATGGGAAAGTCAGTTGCGGTTTTATTGGGACCGGGAGCCGGATGAGCTGAACATCCGCCAGTGCACGGGAACCTTTGGCTACGGATATGAGTACATGGGTCTGAACGGCAGGCTGGTCATCACGCCCCTCACCGACCGGATTTACCTGACGCTCACCCAGGTGAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114764477 221 + 124281992 ------------------CCACTTCCTC--CTCCACCTTTCTTGC----------------------------CGTCCAGCATCCTGGAGGCCCGGGAGTTTGAGTGGGAAAGTCAGTTGCGGTTTTACTGGGACCGGGAGCCGGATGAGCTGAACATCCGCCAGTGCACGGGAACCTTTGGCTATGGCTACGAGTACATGGGCCTGAACGGCAGGCTGGTCATCACGCCCCTCACCGACCGGATCTACCTGACGCTCACACAGGTGAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 408688 221 - 9212255 ------------------CCACTTCCTC--CTCCACTTTTCTTGC----------------------------CATCCAGCATCCTGGAGGCTCGGGAGTTTGAATGGGAAAGTCAGTTGCGGTTTTACTGGGACCGGGAGCCGGATGAGCTGAACATCCGCCAGTGCACGGGAACCTTTGGCTATGGCTACGAGTACATGGGCCTGAACGGCAGGCTGGTCATCACGCCCCTCACCGACCGGATTTACCTGACGCTCACACAGGTGAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2822306 221 + 4466143 ------------------CCACTTCCTC--CTCCACTTTTCTTTC----------------------------CATCCAGCATCCTGGAGGCCCGGGAGTTTGAATGGGAAAGTCAGTTGCGGTTTTACTGGGACCGGGAGCCGGATGAGCTGACCATCCGCCAGTGCACGGGAACCTTTGGCTATGGCTACGAGTACATGGGCCTGAACGGCAGGCTGGTCATCACGCCCCTCACTGACCGGATTTACCTGACGCTCACACAGGTGAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1518571 221 + 5364348 ------------------CCACTTCCTC--CTCCACCTTTCTTGC----------------------------CGTCCAGCATCCTGGAGGCCCGGGAGTTTGAGTGGGAAAGTCAGCTGCGGTTTTACTGGGACCGGGAGCCGGATGAGCTGAACATCCGCCAGTGCACGGGAACCTTTGGCTATGGCTACGAGTACATGGGCCTGAACGGCAGGCTGGTCATCACGCCCCTCACCGACCGGATTTACCTGACGCTCACACAGGTGAC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9428606 218 - 31815103 ---------------------CCGACCC--CCCCACATTTCTCGC----------------------------CACCCAGCATTCTCGAAGCCCGGGAGTTCGAGTGGGAGAGCCAGCTGCGGTTTTACTGGGACCGAGAGCCCGACGAGCTGAACATCCGGCAGTGCACGGGCACCTTCGGCTACGGCTACGAGTACATGGGCCTGAACGGGCGGCTGGTCATCACGCCCCTCACCGACCGCATCTACCTGACGCTCACCCAGGTGAC i micMur3.chr21 I 53 I 1115 s proCoq1.NW_012154285v1 6681865 220 - 9870158 ---------------------CCGGCCCCACCCCGCATTTCTCGC----------------------------CACCCAGCATTCTCGAAGCCCGGGAGTTCGAGTGGGAAAGTCAGCTGCGGTTTTACTGGGACCGAGAGCCAGACGAGCTGAACATCCGGCAGTGCACGGGGACCTTCGGCTACGGCTACGAGTACATGGGCCTGAACGGGCGGCTGGTCATCACTCCCCTCACCGACCGCATCTACCTGACGCTCACCCAGGTGAC i proCoq1.NW_012154285v1 I 2 I 1258 s otoGar3.GL873618 4251171 218 + 7922563 ---------------------CTTTGCC--CCCCACATTTCTCAC----------------------------CACCCAGCATTCTTGAAGCCCGGGAGTTCGAGTGGGAAAGTCAGCTGCGGTTTTACTGGGACCGAGAGCCAGACGAGTTGAACATCCGGCAGTGCACAGGGACCTTCGGCTACGGCTATGAGTACATGGGGCTGAATGGGCGTCTGGTCATCACGCCCCTTACCGACCGCATCTACCTGACACTCACCCAGGTGAC i otoGar3.GL873618 I 2 C 0 s mm10.chr5 124775317 216 + 151834684 ---------------------CTTCCTT--CTCTTCCCCTCC--C----------------------------CACCCAGCATCCTTGAGGCCCGGGAGTTTGAGTGGGAGAGCCAGCTCCGCTTCTACTGGGACCGCGAGCCAGATGAGCTCAACATCCGCCAGTGCACTGGGACCTTCAGCTACGGCTATGAGTACATGGGCCTCAACGGGAGGCTGGTCATCACGCCCCTTACAGACCGCATCTACCTGACGCTCACACAGGTGAC i mm10.chr5 C 0 C 0 s canFam3.chr26 33119393 214 - 38964690 ------------------------CTTC--TCCCACGTCTCCT-C----------------------------CTTCCAGCATTCTCGAGGCCCGGGAGTTTGAATGGGAAAGTCAGCTGCGGTTTTACTGGGACCGGGAACCGGATGAGCTGAACATCCGTCAGTGCACGGGCACATTCAGCTACGGCTATGAGTACATGGGCCTGAATGGGAGGTTGGTCATCACGCCGCTCACAGACCGGATTTACCTGACTCTCACCCAGGTGAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 792613 266 - 1116856 CCCTTTCCTCCTTCATGCCTGCCTTCTC--TTCCACCAGTCTTTCTCCCTCTTTATTTGCCTCCCGTTTCCCACCCCCAGCATTCTCGAGGCCCGGGAGTTTGAATGGGAAAGTCAGCTGCGGTTTTACTGGGACCGAGAACCCGATGAACTCAACATCCGCCAGTGCACGGGAACCTTCAGCTACGGTTATGAGTACATGGGATTGAACGGGAGATTGGTCATCACTCCCCTTACAGATCGGATTTACCTGACCCTCACTCAGGTGA- i dasNov3.JH568189 C 0 C 0 a score=699273.000000 s hg38.chr12_KI270834v1_alt 19651 74 + 119498 TGCCAGCCTGGCACTTGTGGTTACCACTTACCTTGGGGCG----------------GGGCATTTT-CTCTAAGCTTGAGGTGTGATGACTG s panTro5.chr12 127305871 74 + 137163284 TGCCAGCCTGGCACTTGTGCTTACCACTTACCTTGGGGCA----------------GGGCATTTT-CTCTAAGCTTCAGGTGTGATGACTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125656821 74 + 135337776 TGCCAGCCTGGCACTTGTGCTTACCACTTACCTTGGGGCA----------------GGGCATTTT-CTCTAAGCTTCAGGTGTGATGACTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8169704 74 - 8369578 TGCCAGCCTGGCACTTGTGGTTACCACTTACCTTGGGGCG----------------GGGCATTTT-CTCTAAGCTTGAGGTGTGATGACTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97817824 74 + 106955855 TGTCGGCCTGGCGCTTGTGGTTACCACTTACCTTGGGGCG----------------GGGCATTTT-CTCTAAGCTTGAGGCGTGATCACTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123940561 74 + 133663169 TGTCGGCCTGGCGCTTGTGGTTACCACTTACCTTGGGGTG----------------GGGCACTTT-CTCTAAGCTTGAGGCATGATGACTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128188697 74 + 137757926 TGTCGGCCTGGCGCTTGTGGTTACCACTTACCTTGGGGTG----------------GGGCACTTT-CTCTAAGCTTGAGGCATGATGACTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10589378 74 - 16319837 TGTCGGCCTGGCGCTTGTGGTTACCACTTACCTTGGGGTG----------------GGGCACTTT-CTCTAAGCTTGAGGCATGATGACTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12211251 74 + 20526591 TGTCAGCCTGGCGCTTGTGGTTACCACTTACCTTGGGGTG----------------GGGCACTTT-CTCTAAGCTTGAGGCATGATGACTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119184194 74 + 128539186 TGTCAGCCTGGCGCTTGTGGTTACCACTTACCTTGGGGTG----------------GGGCACTTT-CTCTAAGCTTGAGGCATGATGACTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 497069 74 + 6255621 TGTCGGCCTGGTGCTTGTGGTTACCACTTACCTTGGGGTG----------------GGGCACTTT-CTCTAAGCTTGAGGCATGATGACTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4559975 74 - 8658521 TGTCAGCCTGGCGCTTGTGGTTACCGCTTACCTTGGGGCG----------------GGGCACTTT-CTCTAAGCTTGAGGCGTGATGActg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114764698 73 + 124281992 TGTGGGCCTGGCAC-TGTGCTTGCCACTTACCCTGGGGCG----------------GGGCATTTT-CTCTACGCTTGAAGCCTGATGACTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 408909 70 - 9212255 TGTCGGCCTGGC----GTGGTTGCCACTTACCTTGGGGCG----------------GGGCATTTT-CTCTATGCTTGAAGCATGATGACTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2822527 74 + 4466143 TGTCGGCCTGGTGCTTGTGGTTGCCACTTACCTTGGGGCG----------------GGGCATTTT-CTCTATGCTTGAAGCGTGATGACTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1518792 73 + 5364348 TGTCGGCCTGGCGC-TGTGGTTGCCACTTACCTTGGGGTG----------------AGGCATTTT-CTCTACGCCTGAAGCATGATGACTG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4251389 56 + 7922563 TGCAGGCCTAGTGCCCGTAGCTGCCACTT--------GTT----------------GTGCCTTTC-CCCTAAGC----------ACAGCCG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124775533 25 + 151834684 ----------------ATATTTGCCCCT----------------------------GGACATAGC-CTGT--------------------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33119607 62 - 38964690 --------GGGC---TGTGGTCATTCGCCGCCTGTGGTTA----------------TGGGTTGTT-CTCTAAGCATGA-TTAGGGTGACTG i canFam3.chr26 C 0 I 1216 s dasNov3.JH568189 792879 79 - 1116856 TGCTGACTTGCC--CTTTGGTTATGACCTACCTTATAGTTCCTAACCATTTTATACATGCATTTCACTCTACGC----------ATGACTA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I a score=892044.000000 s hg38.chr12_KI270834v1_alt 19725 81 + 119498 CAGTGATTGA-AATAG-CAGGGGAGATCATTGC-----TTTGAAATCTCGAAAAGCTTTTCCA--TTTGGGATGTGACC-AGATTGTCACC s panTro5.chr12 127305945 81 + 137163284 CAGTGATTGA-AATAG-CAGGGGAGATCATTGC-----TTTGAAATCTCGAAAAGCTTTTCCA--TTTGGGATGTGACC-CGATTGTCACC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125656895 81 + 135337776 CAGTGATTGA-AATAG-CAGGGGAGATCATTGC-----TTTGAAATCTCGAAAAGCTTTTCCA--TTTGGGATGTGACC-CGATTGTCACC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8169778 81 - 8369578 CAGTGATTGA-AATAG-CAGGGGAGATCATTGC-----TTTGAAATCTCGAAAAGCTTTTCCA--TTTGGGATGTGACC-CGATTGTCACC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97817898 81 + 106955855 CAGTGATTGA-AATAG-CAGGGGAGATCGTTGC-----TTTGAAATCTGGAAAAGCTTTTCCA--TTCGGGATGTGGCC-CGATTGTCACC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123940635 81 + 133663169 CAGTGATTGA-AATAG-CAGGGGAGATCGTTGC-----TTTGAAATCTGGAAAAGCTTTTCTA--TTCGGGATGTGACC-CGATTGTCACC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128188771 81 + 137757926 CAGTGATTGA-AATAG-CAGGGGAGATCGTTGC-----TTTGAAATCTGGAAAAGCTTTTCTA--TTCGGGATGTGACC-CGATTGTCACC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10589452 81 - 16319837 CAGTGATTGA-AACAG-CAGGGGAGATCGTTGC-----TTTGAAATCTGGAAAAGCTTTTCTA--TTCGGGATGTGACC-CGATTGTCACC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12211325 81 + 20526591 CAGTGATTGA-AATAG-CAGGGGAGATCGTTGC-----TTTGAAATCTGGAAAAGCTTTTCCA--TTCGAGATGTGACC-CGATTGTCACT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119184268 81 + 128539186 CAGTGATTGA-AATAG-CAGGGGAGATCGTTGC-----TTTGAAATCTGGAAAAGCTTTTCCA--TTCGGGATGTGACC-CGATTGTCACT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 497143 81 + 6255621 CAGTGATTGA-AATAG-CAGGGGAGATCGCTGC-----TTTGAAATCTGGAAAAGCTTTTCCA--TTCGGGATGTGACC-CGATTGTCACC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4560049 81 - 8658521 ctgtgattga-aatag-caggggagatcgttgc-----tttgaaatctggaaaagcttttcca--ttcaggatgtgACC-TGATTGTCACC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114764771 81 + 124281992 CAGGGATTGA-AACAG-CAAGGGAGATCATTGC-----TTTGAAATCTTGAAAAACGTTTCCA--TTCGCGATGTGACT-CGATTGCCATC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 408979 81 - 9212255 CAGGGATTGA-AATAG-CAAGGGAGATCGTTGC-----TTTGAAATCTTGAAAAACGTTTCCA--TTCGGGATGTGACT-CGATTGACATC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2822601 81 + 4466143 CAGGGATTGA-AATAG-CAAGGGAGATCGTTGC-----TTTGAAATCTTGAAAAACGTTTCCA--TTCGGGATGTGACT-CGATTGACATC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1518865 81 + 5364348 CAGGGATTGA-AATAG-CAAGGGAGATCGTTGC-----TTTGAAATCTTGAAAAACGTTTCCA--TTCGGGATGTGACT-CGATTGACGTC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4251445 82 + 7922563 TGGTGATTGA-CATGGTTAAGGGAGATCACGGC-----TTTGAAATCTTGAAAAGATGTTTCA--TTTGGAATATGACC-TGATAGTCACT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124775558 71 + 151834684 ---TGGTTGT-TCTAGACATGGG---TCTTAGC-----TTTG-AGTTTGGGAAATAGCTTGCA--CTTGGAGTCTGAC-----TTGTCACT i mm10.chr5 C 0 C 0 s dasNov3.JH568189 792958 85 - 1116856 TAGTAATTGGCAATAG-TAAGGGACGTCATTATCGCTGTTTGGGATTGGGAGG-----Ttgcaagttcaggagatccccatgactgccacc i dasNov3.JH568189 C 0 I 69 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e canFam3.chr26 33119669 1216 - 38964690 I a score=272289.000000 s hg38.chr12_KI270834v1_alt 19806 28 + 119498 ATTTGGGATTGGCATGTAAGTGTGGCCG s panTro5.chr12 127306026 28 + 137163284 ATTTGGGATTGGCATGTAAGTGTGGCCG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125656976 28 + 135337776 ATTTGGGATTGGCATGTAAGTGTGGCCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8169859 28 - 8369578 ATTTGGGATTGGCATGTAAGTGTGGCCG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97817979 28 + 106955855 ATTTGGGATTGGGATGTAAGTGTGGCCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123940716 28 + 133663169 ATTTGGGATTGGGATGTAAGTGTGGCCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128188852 28 + 137757926 ATTTGGGATTGGGATGTAAGTGTGGCCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10589533 28 - 16319837 ATTTGGGATTGGGATGTAAGTGTGGCCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12211406 28 + 20526591 ATTTGGGATTGGGATATAAGTGTGGCCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119184349 28 + 128539186 ATTTGGGATTGGGATGTAAGTGTGGCCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 497224 28 + 6255621 ATTTGGGATTGGGATATAAGTGTGGCCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4560130 28 - 8658521 ATTTGGGATTGGGATGTAAGTGTGGCCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114764852 28 + 124281992 ATCTGAGATTGGGATGTCAGTGTGGCCG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 409060 28 - 9212255 GTCTGCGATTAGGATGTCAGTGTGGCCG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2822682 28 + 4466143 GTCTGAGATTGGGCTGTCAGTGTGGCTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1518946 28 + 5364348 GTCAGAGATTGGGATGTCAGTGTGGCCG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4251527 28 + 7922563 GTCTGGGACTGGGATGAGAGTGAGCCTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124775629 25 + 151834684 AT-TGGAACTGAAACCCC--CGAGGACA i mm10.chr5 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793043 69 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I a score=28611.000000 s hg38.chr12_KI270834v1_alt 19834 2 + 119498 TG s panTro5.chr12 127306054 2 + 137163284 TG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657004 2 + 135337776 TG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8169887 2 - 8369578 TG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818007 2 + 106955855 TG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123940744 2 + 133663169 TG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128188880 2 + 137757926 TG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10589561 2 - 16319837 TG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12211434 2 + 20526591 TG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119184377 2 + 128539186 TG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 497252 2 + 6255621 TG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4560158 2 - 8658521 TG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114764880 2 + 124281992 TG i calJac3.chr9 C 0 I 18 s saiBol1.JH378194 409088 2 - 9212255 TG i saiBol1.JH378194 C 0 I 18 s cebCap1.NW_016107484v1 2822710 2 + 4466143 TG i cebCap1.NW_016107484v1 C 0 I 18 s aotNan1.NW_018491581v1 1518974 2 + 5364348 TG i aotNan1.NW_018491581v1 C 0 I 26 s otoGar3.GL873618 4251555 2 + 7922563 TG i otoGar3.GL873618 C 0 I 64 s mm10.chr5 124775654 2 + 151834684 TC i mm10.chr5 C 0 I 2 s dasNov3.JH568189 793112 2 - 1116856 TG i dasNov3.JH568189 I 69 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e canFam3.chr26 33119669 1216 - 38964690 I a score=51698.000000 s hg38.chr12_KI270834v1_alt 19836 8 + 119498 CTTAGCCA s panTro5.chr12 127306056 8 + 137163284 CTTAGCCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657006 8 + 135337776 CTTAGCCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8169889 8 - 8369578 CTTAGCCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818009 8 + 106955855 CTTAGCCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123940746 8 + 133663169 CTTAGCCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128188882 8 + 137757926 CTTAGCCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10589563 8 - 16319837 CTTAGCCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12211436 8 + 20526591 CTTAGCCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119184379 8 + 128539186 CTTAGCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 497254 8 + 6255621 CTTAGCCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4560160 8 - 8658521 CTTAGCCG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114764900 8 + 124281992 CCTAGTCC i calJac3.chr9 I 18 C 0 s saiBol1.JH378194 409108 8 - 9212255 CCCGCTCC i saiBol1.JH378194 I 18 C 0 s cebCap1.NW_016107484v1 2822730 8 + 4466143 CCTAGTCC i cebCap1.NW_016107484v1 I 18 C 0 s otoGar3.GL873618 4251621 8 + 7922563 CTTGTTCC i otoGar3.GL873618 I 64 C 0 s mm10.chr5 124775658 2 + 151834684 CC------ i mm10.chr5 I 2 C 0 s dasNov3.JH568189 793114 8 - 1116856 CTCAGTCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e canFam3.chr26 33119669 1216 - 38964690 I e aotNan1.NW_018491581v1 1518976 26 + 5364348 I a score=1036454.000000 s hg38.chr12_KI270834v1_alt 19844 102 + 119498 CTGGTACACTGGTCCCTAGGTAATGGTGT-GTC-AGGGGTATTGGTAGAGGCCAATGCGAAAAT-GC-----AGGAATGTCAAAGGTGGTGACTGTT--AGGGCAAGTGTGA s panTro5.chr12 127306064 103 + 137163284 CTGGTACACTGGTCCCTAGGTAATGGTGT-GTCGGGGGGTATTGGTAGAGGCCAATGGGAAAAT-GC-----AGGAATGTCAAAGGTGGTGACTGTT--AGGGCAAGTGTGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657014 103 + 135337776 CTGGTACACTGGTCCCTAGGTAATGGTGT-GTCGGGGGGTATTGGTAGAGGCCAATGGGAAAAT-GC-----AGGAATGTCAAAGGTGGTGACTGTT--AGGGCAAGTGTGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8169897 103 - 8369578 CTGGTACACTGGTCCCTAGGTAATGGTGT-GTCGGGGGGTATTGGTAGAGGCCAACGGGAAAAT-GC-----AGGAATGTCAAAGGTGGTGACTGTT--AGGGCAAGTGTGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818017 102 + 106955855 CTGGTACAGTGGTCCCTAGATAATGGTGT-GTC-GGGGGTATCAGTAGAGGCCAATGGGAAAAT-GC-----AGAAATGTCAAAGATGGTGACTTTT--AGGGCAAGTGTGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123940754 103 + 133663169 CTGCTATACTGGCCCCTAGGTAATGGTGT-GTCAGGCTGTATCAGTAGAGGCCAATGGGAAAAT-GC-----AGAAATGTCAAAGATGGTGACTGTT--AGGGCAGGTGTGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128188890 103 + 137757926 CTGCTATACTGGCCCCTAGGTAATGGTGT-GTCAGGCTGTATCAGTAGAGGCCAATGGGAAAAT-GC-----AGAAATGTCAAAGATGGTGACTGTT--AGGGCAGGTGTGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10589571 103 - 16319837 CTGCTATACTGGCCCCTAGGTAATGGTGT-GTCAGGCTGTATCAGTAGAGGCCAATGGGAAAAT-GC-----AGAAATGTCAAAGATGGTGACTGTT--AGGGCAGGTGTGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12211444 103 + 20526591 CTGCTACACTGGCCCCTAGGTAATGGTGT-GTCAGGCTGTATCAGTAGAGGCCAATGGGAAAAT-GC-----AGAAATGCCAAAGATGGTGACTGTT--AGGGCAGGTGTGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119184387 103 + 128539186 CTGCTACACTGGCCCCTAGGTAATGGTGT-GTCAGGCTGTATCAGTAAAGGTCAATGGGAAAAT-GC-----AGAAATGTCAAAGATGGTGACTGTT--AGGGCAGGTGTGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 497262 103 + 6255621 CTGCTACACTGGCCCCTAGGTAATGGTGT-GTCAGGCTGTATCAGTAGAGGCCAATGGGAAAAT-GC-----AGAAATGCCAAAGATGGTGACTGTT--AGGGCAGGTGTGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4560168 103 - 8658521 CTGCTACACTGGCCCCTAGGTAATGGTGT-GTCAGGGGGTATCAGTAGAGGCCAATGGGAAAAT-GC-----AGAAATGTCAAAGATGGTGACTGTT--AGGGCAGGTGTGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114764908 102 + 124281992 CTGGTACACTGGTCCCTGGGTAATGGTGTGGTGGGG--GTATCAGTAGAGGCCAATAGGAAAAT-GC-----AGAAATGTCAAAGATGGTGACTGTT--AGGGCAAGTGTGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 409116 101 - 9212255 CTGGTACACTGGTCTCTCAGCAGTGGTGT-GTCAGG--GTATCAGTAGTGGCCAATAGGAAAAT-GC-----AGAAATGTCAAAGAGGGTGACTGTC--AGGGCAGGTGTGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2822738 102 + 4466143 CTGGTACACTGGTCCCCAGGTAATGGTGTGTCGGGG--GTATCAGTAGAGGCCAATAGGAAAAT-GC-----AGAAATGTCAAAGATGGTGACTGTC--AGGGCAAGTGTGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1519002 101 + 5364348 CCGGTACCCTGGTCCCTGGGTAATGGTGT-GTCGGG--GTATCAGTAGAGGCCAATAGGAAAAT-GC-----AGGAATGTCAAAGATGGTGACTGTT--AGGGCAAGTGTGA i aotNan1.NW_018491581v1 I 26 C 0 s otoGar3.GL873618 4251629 71 + 7922563 CTGGGTCACTAGTCCCTA--TAATGAGGA-GT--GG-----TTAGTAGAG----------------------------GTCAAAGGTGGTG--TGTT-GGGGGTGGGGACAC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124775660 86 + 151834684 CTGGGACACTGGTCCCTATGCAGTAGTGA-TGGAGT---------CAGAGGGTAATAGAAAAATCAC-----AGAAATGTGTAAGATGCATAATATT--AAAG--------- i mm10.chr5 C 0 C 0 s dasNov3.JH568189 793122 100 - 1116856 CTAGTGCACTGGTTCCTATGTAATGG-GT-G---------ACCGGTAGAGATCAATGGAAAAAT-ACAGAAAAGAAATGTTAAAAATGGTGACTATCAAAAGGTGAGTATGA i dasNov3.JH568189 C 0 I 25 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e canFam3.chr26 33119669 1216 - 38964690 I a score=1016037.000000 s hg38.chr12_KI270834v1_alt 19946 99 + 119498 TGTGGttttgcacgtcttgtgacagcttttattccagaatatatccgttcaagtgaacggccttggatgatagagatagtgtctccctccaggacagag s panTro5.chr12 127306167 99 + 137163284 TGTGGttttgcacatcttgtgacagcttttattccagaatatatctgttcaagtgaacggccttggatgatagagatagcgtctccctccaggacagag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657117 99 + 135337776 TGTGGttttgcacatcttgtgacagcttttattccagaatatatctgttcaagtgaacggccttggatgatagagatagcgtctccctccaggacagag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170000 99 - 8369578 TGTGGttttgcacgtcttgtgacagcttttattccagaatatgtctgttcaagtgaacggccttggatgatagagatagtgtctccctccaggacagag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818119 99 + 106955855 TGTGGttttgcacatcttgtgacagcttttattccagaatgtatctgttcaagtgaacagccttggatgatggagatagtgtctccctccaggacagag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123940857 99 + 133663169 TGTGGttttgcacgtcttgtgacagcttttattccagaatatatctgttccagtgaacagccttggatggtagagatagcgtctccctccaggacagaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128188993 99 + 137757926 TGTGGttttgcacgtcttgtgacagcttttattccagaatatatctgttccagtgaacagccttggatggtagagatagcgtctccctccaggacagaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10589674 99 - 16319837 TGTGGtttcgcacgtcttgtgacagcttttattccagaatatatctgctccagtgaacagccttggatggtagagatagcgtctccctccaggacagaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12211547 99 + 20526591 TGTGGttttgcacgtcttgtgacagcttttattccagaatatatctgttccagtgaacagccttggagggtagagatagcgtctccctccaggacagaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119184490 99 + 128539186 TGTGGttttgcacgtcttgtgacagcttttattccagaatatatctgtttcagtgaacagccttggatggtagatgtagcgtctccttccaggacagaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 497365 99 + 6255621 TGTGGttttgcacgtcttgtgacagcttttgttccagaatatatctgttccagtgaacagccttggatggtagagatagcgtctccctccaggacagaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4560271 99 - 8658521 TGTGGttttgtacgtcttgtgacagcttttattccagaatatatctgttccagtgaacagccttggatggtagggatagcgtctccctccaggacagaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114765010 98 + 124281992 TGTGGTTT-Tcacgtcttgtggcagcttttagcctggaatacatctgttcaagtgaacagccctggacaatagagatagtgcctccctccaggatggag i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 409217 98 - 9212255 TGTGGttt-gtacgtcttgtggcagcttttagtcctgaatctatctgttcaggtgagcagccttggatgacagagatagtgtctccatccaggacagag i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2822840 98 + 4466143 TGTGGttt-gcacgtcttgtggcagcttttgatcccgaatatgtctgttcaagtgaacagccttggatgatggagatagcgtctccatccaggacagaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1519103 98 + 5364348 TGTGGttt-gcacgtcttgtggcagcttttagtcccgaatatatctgttcaagtgaacagccttggatgatagagatagtgtctccctccaggagagag i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4251700 90 + 7922563 CATGCTTTTGCATGTC-TGTGACAGTTCTTATTCCAGA--------TTCCGagtgaacagccttagaagatatagacggtgtctccctccaggtcagag i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124775746 56 + 151834684 ---------------------------------------TGTATTGGACCATGAGAAGGCCAGTGGA----GGAGACCATGTCTCCTCTTAGGGTGGCG i mm10.chr5 C 0 I 87 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I a score=921901.000000 s hg38.chr12_KI270834v1_alt 20045 88 + 119498 ggtaaacttgtttgttgtacaggaaatgaagataacacttccatccaggcagagcttgggaaggtttgcaagcaacccccaagactgt s panTro5.chr12 127306266 88 + 137163284 ggtaaacttgtttgctgtacaggaaatgaagataacacttccatccaggcagagcttgggaaggtttgcaagcaacccccaagactgt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657216 88 + 135337776 ggtaaacttgtttgctgtacaggaaatgaagataacacttccatccaggcagagcttgggaaggtttgcaagcaacccccaagactgt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170099 88 - 8369578 ggtaaacttgtttgctgtacaggaaatgaagataacacttccatccaggcagagcttgggaaggtttgcaagcaacccccaagactgt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818218 88 + 106955855 ggtaaacctgtttgctgtacaggaaatgaagataacacttccacacaggcagagcttgggcaggtttgcaagcaacccccaagactgt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123940956 86 + 133663169 ggtaaacttgtttgctgtacaggaaatgaa-gtaacacatccatccaggcagagtttgggcaggTTGGCAAGTAA-CCCCAAGACTGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128189092 88 + 137757926 ggtaaacttgtttgctgtacaggaaatgaaggtaacacatccatccaggcagagtttgggcaggttggcaagtaacccccaagactgt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10589773 88 - 16319837 ggtaaacttgtttgctgtacaggaaatgaaggtaacacatccatccaggcagagtttgggcaggttggcaagtaacccccaagactgt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12211646 86 + 20526591 ggtaaacttgtttgctgtacaggaaatgaaggta--acatccatccaggcagagtttgggcaggttggcaagcaacccccaagactgt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119184589 88 + 128539186 ggtaaacttgtttgctgtacaggaaatgaaggtaacacatccatccaggcagagtttgggcaggttggcaagcaacccccaagactgt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 497464 86 + 6255621 ggtaaacttgtttgctgtacaggaaatgaaggta--acatccatccaggcagagtttgggcaggttggcaagcaacccccaagactgt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4560370 88 - 8658521 ggtaaacttgtttgctgtacaggaaatgaaggtaacacttccatccaggcagagtttgggcaggttggcaagcaacccccaaggctgt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114765108 88 + 124281992 ggtaaactagtttgctgtacagaaaatgaagataacacttccatccaggcagagcttgagcaggtttgcaagccacccccaagactgc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 409315 88 - 9212255 ggtaaactagtttgctgtgcaggaaatgaagctaacacttccatccaggcagagcttgagcaggcttgcaggcaacccccaagatggc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2822938 88 + 4466143 cgtaaactagtttgctgtgcaggaaatgaagataacacttccatccaggcagagcttgagcaggtttgcaagcagcccccaagactgc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1519201 88 + 5364348 ggtaaactagtttgctgtacaggaaatgaagataacacttccatccaggcagagcttgagcaggtttgcaagcaacccccaagactgc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4251790 88 + 7922563 ggcaaatttgtttgctgtccatgtaatacagatagcgttgctgtgcaggcaggctttgggcaggtttttaagcaactcttaggattgt i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e mm10.chr5 124775802 87 + 151834684 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I a score=1152752.000000 s hg38.chr12_KI270834v1_alt 20133 114 + 119498 ttgtcagatgcttgctagttttctttttt--------taaattagagatgaggtcttgatatgttgcccaggcttgccttgaactcctggcctcaagtgatcctcccaccttggcctcctga s panTro5.chr12 127306354 114 + 137163284 ttgtcagatgcttgctagttttctttttt--------taaattagagatgaggtcttgatatgttgcccaggcttgccttgaactcctggcctcaagtgatcctcccaccttggcctcccga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657304 114 + 135337776 ttgtcagatgcttgctagtgttctttttt--------taaattagagatgaggtcttgatatgttgcccaggcttgccttgaactcctggcctcaagtgatcctcccaccttggcctcccga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170187 114 - 8369578 ttgtcagatgcttgctagttttctttttt--------taaattagagatgaggtcttgatatgttgcccaggcttgccttgaactcctggcctcaagtgatcctcccaccttggcctcccga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818306 122 + 106955855 tcgtcagatgcttgctagttttctttttgtcttgttataaattagagatgaggtctcaatatgttgcccaggcttgccttgaactcctggcctcaagtgatcctcccaccttggcctcccaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123941042 110 + 133663169 TTGTCAGATGCTTGCTAGTttcttttttcttttat----aattagagatgaggtctcgatatgttg-ccaggc-tgccttgaactcctggctc--agtgatcctcc--acttg--cctccga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128189180 122 + 137757926 ttgtcagatgcttgctagttttcttttcttctttttataaattagagatgaggtctcgatatgttgcccaggcttgccttgaactcctggcctcaggtgatcctcccaccttggcctcccga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10589861 122 - 16319837 ttgtcagatgcttgctagttttctttttttctttttataaattagagatgaggtctcgatatgttgcccaggcttgccttgaactcctggcctcaggtgatcctcccaccttggcctcccga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12211732 121 + 20526591 ttgtcagatgcttgctagttttctttt-ttctttttataaattagagatgaggtctcaatatgttgcccaggcttgccttgaactcctggcctcaggtgatcctcccaccttggcctcccga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119184677 122 + 128539186 ttgtcagatgcttgctagttttctttttttctttttataaattagagatgaggtctcgatatgttgcccaggcttgccttgaactcctggcctcaagtgatcctcccaccttggcctcctga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 497550 122 + 6255621 ttgtcagatgcttgctagttttctttttttctttttataaattagagatgaggtctcgatatgttgcccaggcttgccttgaactcctggcctcaggtgatcctcccaccttggcctcccga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4560458 122 - 8658521 ttgtcagatgcttgctagttttctttttttctttttataaattagagatgaggtcttgatatgttgcccaggcttgccttgagctcctggcctcaagtgatcctcccaccttggcctcccga i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114765196 122 + 124281992 ttgtcagatgcttgctagcgttcttttttgctttttataaattagagatgaggtcttgatatgttgcccaggcttgccttgaactcctggcctcaggtgatcttcccaccgtggcctcctga i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 409403 122 - 9212255 ttgtcaggtgcttgctagtgttcttttttgctttttataaattagagatgaggtctcgatatgtttcccaggcttgccttgaactcctggcctcaggtgatcctcccaccttggcctcccga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2823026 122 + 4466143 ttgtcagatgcctgctagtgttcttttttgctttttagaaattagagatgaggtctcgttatgtttcccaggcttgccttgaactcctggcctcaggtgatcctcccaccttggcctcccga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1519289 122 + 5364348 ttgtcagatgcttgctagtgttcctttttgctttttataaattagagatgagatctcgatatgtttcccaggcttgccttgaactcctggcctcaggtgatcctcccaccttggcctcccga i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e mm10.chr5 124775802 87 + 151834684 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e otoGar3.GL873618 4251878 0 + 7922563 C a score=618169.000000 s hg38.chr12_KI270834v1_alt 20247 67 + 119498 gtagctaggactatagcattcactgctgcacc------------tggctacattggtggtctcttaggctcacagtttc s panTro5.chr12 127306468 67 + 137163284 gtagctaggactatagcatgcactgctgcacc------------tggctacattggtggtctcttaggctcacagtttc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657418 67 + 135337776 gtagctaggactatagcatgcactgctgcacc------------tggctacattggtggtctcttaggcacacagtttc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170301 67 - 8369578 gtagctaggactatagcatgcactgctgcacc------------tggctgcattggtggtctcttaggcccacagtttc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818428 67 + 106955855 gtagctaggactatagcgtgcactgctacacc------------tggctacattggtggtctcttaggttcacagtttc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123941152 78 + 133663169 gtagctaggactatagcacgcactgctgcaccctgcTGCAACCTTGGCTAGGATGGTGGTCTCTTA-GCTCACATTTTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128189302 67 + 137757926 gtagctaggactatagcacgcaccgctgcacc------------tggctagattggtggtctcttaggctcacattttc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10589983 67 - 16319837 gtagctaggactatagcacgcaccgctgcacc------------tggctagattggtggtctcttaggctcacattttc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12211853 67 + 20526591 gtagctaggactatagcacgcaccgctgcacc------------tggctagattggtggtctcttaggctcacattttc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119184799 67 + 128539186 gtagctaggactatagcatgcaccgctacacc------------tggctagattggtggtctcttaggctcacattttc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 497672 67 + 6255621 gtagctaggactatagcacgcaccgctgcacc------------tggctagattggtggtctcttaggctcacattttc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4560580 67 - 8658521 gtagctgggactatagcatgcaccactgcaac------------tggctagattggtggtctcttaggctcacattttc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114765318 67 + 124281992 ttagctgggagcatagcacacactactgcacc------------tggctaggttggtgggctcttaagcccacagtttc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 409525 67 - 9212255 ttagctgggagcatagcatgcaccactgcacc------------tggctagggtggtgggctcttaagctcacagtttc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2823148 67 + 4466143 ttagctgggagcatagcatgcaccactgcacc------------tggctaggttggtggcctcttaagctcacagtttc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1519411 67 + 5364348 ttagctgggagcatagcatgcaccactgcacc------------tggctaggttggtgggctcttaagctcacagtttc i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124775889 56 + 151834684 ggagct-gtaccAGAGCCTGCATCACAGTGCC------------TGTGTG---TGATGGGTCCCTTAGCGCA------- i mm10.chr5 I 87 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e otoGar3.GL873618 4251878 0 + 7922563 C a score=2266543.000000 s hg38.chr12_KI270834v1_alt 20314 227 + 119498 t--------cagc------tgtgactcatacccactgtggatgtggcatgcacctggg-cccgtctccacatcacaccatgggatttggggggacaaggataaagggaatgagtgagaacaggaagcccctgctgcctcctgtgctgtgagtgataaagtcctttgtttttgagaaaa----agagtgtcatctt-----atctgtattggttagggttccacag-----agaaatagaaccaataggacatagct s panTro5.chr12 127306535 227 + 137163284 t--------cagc------tgtgactcatacccactgtggatgtggcatgcacctggg-cccgtctccacatcacagtatgggatttgcggggacaaggataaagggaatgagtgagaacaggaagcccctgctgcctcctgtgctgtgagtgataaagtcctttgtttttgagaaaa----agagtgtcatctt-----atctgtattggttagggttccacag-----agaaatagaaccaataggacatagct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657485 227 + 135337776 t--------cagc------tgtgactcatacccactgtggatgtggcatgcacctggg-cccgtctccacatcacagtatgggatttgcggggacaaggataaagggaatgagtgagaacaggaagcccctgctgcctcctgtgctgtgagtgataaagtcctttgtttttgagaaaa----agagtgtcatctt-----atctgtattggttagggttccacag-----agaaatagaaccaataggacatagct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170368 226 - 8369578 t--------cagc------tgtgactcatacccactgtggatgtggcatgcacctggg-cccgtctccacatcacaccatgggatttg-ggggacaaggataaagggaatgagtgagaacaggaagcccctgctgcctcctgtgctgtgagtgataaagtcctttgtttttgagaaaa----agagtgtcatctt-----atctgtattggttagggttctacag-----agaaatagaaccaataggacatagct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818495 227 + 106955855 t--------cagc------tgtgactcatacccactgtgggcgcggcatgcacctggg-cctgtctccacatcaccccatgggatttggggggacaaggataaagggaatgagtgagaacaggaagcccatgctgcctcctgtgctgtgagtgataaagtcctttgtttttgagaaaa----agagtgtcatctt-----atctgtattggttagggttctccag-----agaaatagaaccaataggacatagct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123941230 238 + 133663169 TCATACCCACAGCGGGGTAtgagactcatacccgctgtgggtgtggcatgcacctgggccccgtctcctcatcaccccat-ggatttggggggacagggataaagggaatgagtgagaacaggaagcccatgctgcctcctgtgctgtgggtgataaagtcctttg-ttttgagaaaa----agagtgtcatctt-----atctgTATTGGTTAGGG-TCTCCAG-----AGAAATAGTA-CAGCAGGACATAGCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128189369 227 + 137757926 t--------cagc------tgagactcatacccgctgtgggtgtggcatgcacctggg-cccgtctcctcatcaccccatgggatttggggggacagggataaagggaatgagtgagaacaggaagcccatgctgcctcctgtgctgtgggtgataaagtcctttgtttttgagaaaa----agagtgtcatctt-----atctgtattggttagggttctccag-----agaaatagtaccagcaggacatagct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10590050 240 - 16319837 tcatacccacagc-gggtatgagactcatacccgctgtgggtgtggcatgcacctggg-cccgtctcctcatcaccccatgggatttggggggacagggataaagggaatgagtgagaacaggaagcccatgctgcctcctgtgctgtgggtgataaagtcctttgtttttgagaaaa----agagtgtcatctt-----atctgtattggttagggttctccag-----agaaatagtaccagcaggacatagct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12211920 227 + 20526591 t--------cagc------tgagactcatacccgctgtgggtgtggcatgcacctggg-cctatctcctcatcaccccatgggatttggggggacagggataaagggaatgagtgagaacaggaagcccgtgctgcctcctgtgctgtgagtgataaagtcctttgtttttgagaaaa----agagtgtcatctt-----atctgtattggttagggttctccag-----agaaatagtaccagcaggacatagct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119184866 227 + 128539186 t--------cagc------tgagactcatacccgctgtgggtgtggcacgcacctggg-cccatctccacatcaccccatgggatttgggggaacagggataaagggaatgagtgagaacaggaagtccatgctgccttctgtgctgtgagtgataaagtcctttgtttttgagaaaa----agagtgtcatctt-----atctgtgtaggttagggttctccag-----agaaataggaccagtaggacatagct i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 497739 227 + 6255621 t--------cagc------tgagactcatacccgctgtgggtgtggcatgcgcctggg-cccgtctcctcatcaccccatgggatttggggggacagggataaagggaatgagtgacaacaggaagcccatgctgcctcctgtgctgtgagtgataaagtcctttgtttttgagaaaa----agagtgtcatctt-----atctgtattggttagagttctccag-----agaaatagtaccagtaggacatagct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4560647 227 - 8658521 c--------cagc------tgagactcatacccactgtgggtgtggcatgcacctggg-cccgtctccacgtcaccccatggtatgtagggggacagggataaagggaatgagtgaaaacaggaagcccatgctgcctcctgtgctgtgagtgataaagtgctttgtttttgagaaaa----agagtgtcatctt-----atctgtattggttagggttctccag-----agaaataggaccagtaggacatagct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114765385 224 + 124281992 t--------catc------tgtgactcatacctactgtgggtgcggcatgcacctgg--cctgtctccacatcacctcttgggatttgcagggacagggatgaagggaatgagtgagagcaggaag-ccatgctgcctcctgtgctgtgagtg-taaagtccttttcttttgaGAAAA----AGAGTGTAATCTT-----atctgtattggttagggttctccag-----agaaatagaacctataggacaCAGCT i calJac3.chr9 C 0 I 40 s saiBol1.JH378194 409592 214 - 9212255 t--------cggc------tgtgactcttacctactgtgggtgcggcatgcacctgg--cctgtctccatatcacctcatgggatttgcagggaca-ggatgaagggaatgagtgagagcaggaag-ccatgc---------tgctgtgagtg-taaagtcctttgcttttgaGAAAA----ATAGTGTAATCTT-----Gtctgtattggttagggttctccag-----agaaatagaaccaataggacatAGCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2823215 223 + 4466143 t--------cggc------tgtgtctcatacccactgtgggtgcggcatgcacctgg--cctgtctccacatcacctcatgggatttgcagggaca-ggatgaagggaatgagtgagagcaggaag-tcatactgcctcctgtgctgtgagtg-taaagtcctttgcttttgaGAAAA----AGAATGTAATCTT-----atctgtattggttagggctctccag-----agatacagaaccaaaaggacatAGCT i cebCap1.NW_016107484v1 C 0 I 899 s aotNan1.NW_018491581v1 1519478 223 + 5364348 t--------cggc------tgtgactcattcctactgtgggtgtggcatgcacctgg--tctgtctccacatcacctcatgggatttgcagggaca-ggataaagggaatgagtgagagcaggaag-ccgtgctgcctcctgtgctgtgagtg-taaagtcctttgcttttgaGAAAA----ACAGTGTAATCTT-----atctgtattggttagggttctccag-----agaaatagaaccaataggacaGAGct i aotNan1.NW_018491581v1 C 0 I 346 s otoGar3.GL873618 4251878 207 + 7922563 t--------cagc------tgtgattcagaccc--------tggagca-gcacctggg-cc--tccgcacctcaccctgggggatctg--ggcacagaggctaagggggtgggtgagaacaggaagccca--------cttgtgctaggagtgataaagttctttgtctTGGGGGAAAAAATAAAGTATGATCTT-----ACCtgcattagccagggttctccac-----agaaacagaatcagtagT---TATCT i otoGar3.GL873618 C 0 I 10 s mm10.chr5 124775945 211 + 151834684 ---------CAGC------TGAGCTTCAATCCCACACTGTGTACAGCACACTCCTGTG-CTTGTCTCTGCACTACCTCGCTGTACCTGGGGGTAAGTGGGTGAACGGACGG---------ATGAAGCCCGTGACAACT------------GTG----AGCCCTTTGTCTTTCTAAAAA----AAAGTGTGAACTTCAGCCAAGCGTGATGGTCATGtttgctgaggtggaggaagaaggatcaggagttcaaggtc i mm10.chr5 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I a score=27860.000000 s hg38.chr12_KI270834v1_alt 20541 4 + 119498 agct s panTro5.chr12 127306762 4 + 137163284 agct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657712 4 + 135337776 agct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170594 4 - 8369578 agct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818722 4 + 106955855 agct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123941468 4 + 133663169 AGct i rheMac8.chr11 C 0 I 1124 s macFas5.chr11 128189596 4 + 137757926 agct i macFas5.chr11 C 0 I 16 s macNem1.NW_012010578v1 10590290 4 - 16319837 agct i macNem1.NW_012010578v1 C 0 I 902 s cerAty1.NW_012001186v1 12212147 4 + 20526591 agct i cerAty1.NW_012001186v1 C 0 I 8 s chlSab2.chr11 119185093 4 + 128539186 agct i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 497966 4 + 6255621 agct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4560874 4 - 8658521 agct i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 409806 4 - 9212255 CGCT i saiBol1.JH378194 C 0 C 0 s otoGar3.GL873618 4252095 4 + 7922563 ATTT i otoGar3.GL873618 I 10 C 0 s mm10.chr5 124776156 4 + 151834684 accc i mm10.chr5 C 0 I 2 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e aotNan1.NW_018491581v1 1519701 346 + 5364348 I e cebCap1.NW_016107484v1 2823438 899 + 4466143 I e calJac3.chr9 114765609 40 + 124281992 I a score=83902.000000 s hg38.chr12_KI270834v1_alt 20545 44 + 119498 aGCTGGATGGctgtctgtctgtctgtg--------------tatctatctatctatct s panTro5.chr12 127306766 52 + 137163284 aGCTGGATGGctgtctgtctgtctgtg----tatct--atctatctatctatctatct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657716 56 + 135337776 aGCTGGATGGctgtctgtctgtctgtgtatctatct--atctatctatctatctatct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170598 56 - 8369578 aGctgtctgtctgtctgtctgtgtatctatctatct--atctatctatctatctatct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818726 56 + 106955855 agctggctggctggctggctggctgtgtatctatct--atctatctatctatctatct i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128189616 44 + 137757926 ------------atctgtctatctgtctgtctgtct--gtctctctgtctatcgatct i macFas5.chr11 I 16 C 0 s cerAty1.NW_012001186v1 12212159 44 + 20526591 ------------gtctatctatctgtctgtctgtct--gtctctctgtctatcgatct i cerAty1.NW_012001186v1 I 8 C 0 s chlSab2.chr11 119185097 44 + 128539186 ------------gtttgtctgtctatctgtctgtct--gtctgtctctctctctgtct i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 497970 44 + 6255621 ------------gtttgtctgtctgtctatctgtct--gtctgtctatctatctatct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4560878 44 - 8658521 ------------gtttgtctgtctgtctatctatct--gtctatctgtctgtctctct i colAng1.NW_012116043v1 C 0 I 38 s saiBol1.JH378194 409810 31 - 9212255 -------------------CTCTTGTGCACACA-------CACTCTCtccatccatc- i saiBol1.JH378194 C 0 I 1 s otoGar3.GL873618 4252099 39 + 7922563 ------------ATCTGGATA---GTACATCTAGTTAGGTAGATCTCACTGTTT---- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124776162 55 + 151834684 agctatatagctggttGTTGTTTTTTTTTTTTAACC---TTTTCCTCTttatttttct i mm10.chr5 I 2 I 6 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e aotNan1.NW_018491581v1 1519701 346 + 5364348 I e cebCap1.NW_016107484v1 2823438 899 + 4466143 I e calJac3.chr9 114765609 40 + 124281992 I e macNem1.NW_012010578v1 10590294 902 - 16319837 I e rheMac8.chr11 123941472 1124 + 133663169 I a score=2104.000000 s hg38.chr12_KI270834v1_alt 20589 1 + 119498 a s panTro5.chr12 127306818 1 + 137163284 a i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657772 1 + 135337776 a i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170654 1 - 8369578 a i gorGor5.CYUI01015152v1 C 0 I 3 s nomLeu3.chr10 97818782 1 + 106955855 a i nomLeu3.chr10 C 0 I 3 s macFas5.chr11 128189660 1 + 137757926 g i macFas5.chr11 C 0 I 5 s cerAty1.NW_012001186v1 12212203 1 + 20526591 g i cerAty1.NW_012001186v1 C 0 I 5 s chlSab2.chr11 119185141 1 + 128539186 a i chlSab2.chr11 C 0 I 13 s manLeu1.NW_012103587v1 498014 1 + 6255621 a i manLeu1.NW_012103587v1 C 0 I 878 s otoGar3.GL873618 4252138 1 + 7922563 G i otoGar3.GL873618 C 0 I 14 s mm10.chr5 124776223 1 + 151834684 a i mm10.chr5 I 6 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e aotNan1.NW_018491581v1 1519701 346 + 5364348 I e cebCap1.NW_016107484v1 2823438 899 + 4466143 I e saiBol1.JH378194 409841 1 - 9212255 I e calJac3.chr9 114765609 40 + 124281992 I e colAng1.NW_012116043v1 4560922 38 - 8658521 I e macNem1.NW_012010578v1 10590294 902 - 16319837 I e rheMac8.chr11 123941472 1124 + 133663169 I a score=17995.000000 s hg38.chr12_KI270834v1_alt 20590 31 + 119498 ----atctatctatcttatccatcca------------tccgtgcat s panTro5.chr12 127306819 43 + 137163284 ----atctatctatcttatccatccatccatccatccgtccatgcat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657773 43 + 135337776 ----atctatctatcttatccatccatccatccatccgtccgtgcat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170658 43 - 8369578 ----atctatctatcttatccatccgtccgtccgtccgtccgtccat i gorGor5.CYUI01015152v1 I 3 C 0 s nomLeu3.chr10 97818786 21 + 106955855 ----atctatctatc-tatctatcta--------------------- i nomLeu3.chr10 I 3 C 0 s macFas5.chr11 128189666 28 + 137757926 ----atctatctatc-ta--tatcta------------tgtatctat i macFas5.chr11 I 5 C 0 s cerAty1.NW_012001186v1 12212209 30 + 20526591 ----atctatctatc-tatctatcta------------tctatctat i cerAty1.NW_012001186v1 I 5 C 0 s chlSab2.chr11 119185155 28 + 128539186 ----atctatctatc-tatctatcta--------------tatctat i chlSab2.chr11 I 13 C 0 s saiBol1.JH378194 409842 18 - 9212255 ----atccatccatc-catccat------------------------ i saiBol1.JH378194 I 1 C 0 s otoGar3.GL873618 4252153 14 + 7922563 ----ATGTATCTGTA-AAG---------------------------- i otoGar3.GL873618 I 14 C 0 s mm10.chr5 124776224 31 + 151834684 aaatatttatttatttcatgtatgtg------------ggtat---- i mm10.chr5 C 0 I 1 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e aotNan1.NW_018491581v1 1519701 346 + 5364348 I e cebCap1.NW_016107484v1 2823438 899 + 4466143 I e calJac3.chr9 114765609 40 + 124281992 I e colAng1.NW_012116043v1 4560922 38 - 8658521 I e manLeu1.NW_012103587v1 498015 878 + 6255621 I e macNem1.NW_012010578v1 10590294 902 - 16319837 I e rheMac8.chr11 123941472 1124 + 133663169 I a score=-11124.000000 s hg38.chr12_KI270834v1_alt 20621 13 + 119498 ccatc--------catcta---ca s panTro5.chr12 127306862 13 + 137163284 ccatc--------catcta---ca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657816 13 + 135337776 ccatc--------catcta---ca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170701 10 - 8369578 ccatc--------catcc------ i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818807 10 + 106955855 tcatc--------tatct------ i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128189694 6 + 137757926 ct-----------tatc------- i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12212239 9 + 20526591 ctatc--------tatc------- i cerAty1.NW_012001186v1 C 0 I 2 s chlSab2.chr11 119185183 9 + 128539186 atatc--------tatc------- i chlSab2.chr11 C 0 I 1 s calJac3.chr9 114765649 11 + 124281992 ccatc--------catcca----- i calJac3.chr9 I 40 C 0 s saiBol1.JH378194 409860 14 - 9212255 ccatc--------catcTAAtc-- i saiBol1.JH378194 C 0 C 0 s otoGar3.GL873618 4252167 11 + 7922563 TTATC--------CATAAA----- i otoGar3.GL873618 C 0 I 2 s mm10.chr5 124776256 15 + 151834684 ctatcgctgtcttca--------- i mm10.chr5 I 1 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e aotNan1.NW_018491581v1 1519701 346 + 5364348 I e cebCap1.NW_016107484v1 2823438 899 + 4466143 I e colAng1.NW_012116043v1 4560922 38 - 8658521 I e manLeu1.NW_012103587v1 498015 878 + 6255621 I e macNem1.NW_012010578v1 10590294 902 - 16319837 I e rheMac8.chr11 123941472 1124 + 133663169 I a score=-20668.000000 s hg38.chr12_KI270834v1_alt 20634 8 + 119498 tat--ccatc s panTro5.chr12 127306875 4 + 137163284 t------atc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657829 1 + 135337776 t--------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170711 3 - 8369578 -------atc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818817 4 + 106955855 t------gtc i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128189700 8 + 137757926 --catccatc i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12212250 8 + 20526591 --tatctatg i cerAty1.NW_012001186v1 I 2 C 0 s chlSab2.chr11 119185193 8 + 128539186 --tatccatc i chlSab2.chr11 I 1 C 0 s colAng1.NW_012116043v1 4560960 8 - 8658521 --tatccatc i colAng1.NW_012116043v1 I 38 C 0 s calJac3.chr9 114765660 2 + 124281992 --------tc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 409874 8 - 9212255 --ttttcttc i saiBol1.JH378194 C 0 C 0 s otoGar3.GL873618 4252180 4 + 7922563 ------TATC i otoGar3.GL873618 I 2 C 0 s mm10.chr5 124776271 8 + 151834684 --gacacacc i mm10.chr5 C 0 I 362 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e aotNan1.NW_018491581v1 1519701 346 + 5364348 I e cebCap1.NW_016107484v1 2823438 899 + 4466143 I e manLeu1.NW_012103587v1 498015 878 + 6255621 I e macNem1.NW_012010578v1 10590294 902 - 16319837 I e rheMac8.chr11 123941472 1124 + 133663169 I a score=798.000000 s hg38.chr12_KI270834v1_alt 20642 2 + 119498 ca---- s panTro5.chr12 127306879 2 + 137163284 ca---- i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170714 2 - 8369578 ca---- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818821 2 + 106955855 ca---- i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128189708 2 + 137757926 ca---- i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12212258 2 + 20526591 ta---- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119185201 2 + 128539186 ca---- i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4560968 2 - 8658521 ca---- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114765662 2 + 124281992 ca---- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 409882 2 - 9212255 ct---- i saiBol1.JH378194 C 0 C 0 s otoGar3.GL873618 4252184 6 + 7922563 TAGATA i otoGar3.GL873618 C 0 I 261 e micMur3.chr21 9428824 1115 - 31815103 I e mm10.chr5 124776279 362 + 151834684 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e aotNan1.NW_018491581v1 1519701 346 + 5364348 I e cebCap1.NW_016107484v1 2823438 899 + 4466143 I e manLeu1.NW_012103587v1 498015 878 + 6255621 I e macNem1.NW_012010578v1 10590294 902 - 16319837 I e rheMac8.chr11 123941472 1124 + 133663169 I e panPan2.chr12 125657830 0 + 135337776 C a score=164302.000000 s hg38.chr12_KI270834v1_alt 20644 66 + 119498 tccatc-catcc----------------------atccatccatcc-atccatccatccat-------ccatgtatctatccatccatccatcctat----------------- s panTro5.chr12 127306881 66 + 137163284 tccatc-catcc----------------------atccatccatcc-atccatccatccat-------ccatgtgtctatgcatccatccatcctat----------------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657830 63 + 135337776 ---atc-catcc----------------------atccatccatcc-atccatccatccat-------ccatgtatctatccatccatccatcctat----------------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170716 63 - 8369578 tctgtc-catgc----------------------atccatccatct-acatatccatccat-------ccatccatccatccatccatccatcc-------------------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818823 62 + 106955855 tccatc-catcc----------------------atccatccatcc-at-catccatctat-------gcatctatccatccatccatccatcc-------------------- i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128189710 65 + 137757926 tccatc-catcc----------------------atccatccatcc-atccatccatccgt-------ctatgtatctatctatccatccaccc-at----------------- i macFas5.chr11 C 0 I 174 s cerAty1.NW_012001186v1 12212260 66 + 20526591 tctatcttatcc----------------------atccatccatcc-atccatccatctgt-------ctatgtatctatctatccatccaccc-at----------------- i cerAty1.NW_012001186v1 C 0 I 1 s chlSab2.chr11 119185203 59 + 128539186 tccatc-catcc----------------------gtctatgtatct-atctatccatccac-------ccatgtatctatctatccatcc------------------------ i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4560970 63 - 8658521 tccatc-tatcc----------------------atccatccatcc-atccatccatccat-------ccatccatccatccatccatccatcc-------------------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114765664 71 + 124281992 tccatc-catcc----------------------atccatccatcc-atccgtccatctatGTATCTAATCTTTttctttctttctctct-------------------cttcc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 409884 105 - 9212255 tccttc-cttcctccctctttctcttttctctctttccatccatcctATCCGTCCATCTAT-------CTCTGTTTCTCTCTCcctacctatcc-atcctgtctatctacctac i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e mm10.chr5 124776279 362 + 151834684 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e otoGar3.GL873618 4252190 261 + 7922563 I e aotNan1.NW_018491581v1 1519701 346 + 5364348 I e cebCap1.NW_016107484v1 2823438 899 + 4466143 I e manLeu1.NW_012103587v1 498015 878 + 6255621 I e macNem1.NW_012010578v1 10590294 902 - 16319837 I e rheMac8.chr11 123941472 1124 + 133663169 I a score=9491.000000 s hg38.chr12_KI270834v1_alt 20710 10 + 119498 -----tatctatcta----- s panTro5.chr12 127306947 10 + 137163284 -----tatctatcta----- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657893 10 + 135337776 -----tatctatcta----- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170779 9 - 8369578 ------atccatcca----- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818885 9 + 106955855 ------atccatcca----- i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128189949 10 + 137757926 -----tatctatcta----- i macFas5.chr11 I 174 I 4 s cerAty1.NW_012001186v1 12212327 10 + 20526591 -----tatccatcta----- i cerAty1.NW_012001186v1 I 1 I 4 s chlSab2.chr11 119185262 10 + 128539186 -----tatctatcta----- i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4561033 9 - 8658521 ------atccatcca----- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114765735 20 + 124281992 tttcttttccttcctttctg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 409989 20 - 9212255 ctacctacTCGTCCTGTCTG i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e mm10.chr5 124776279 362 + 151834684 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e otoGar3.GL873618 4252190 261 + 7922563 I e aotNan1.NW_018491581v1 1519701 346 + 5364348 I e cebCap1.NW_016107484v1 2823438 899 + 4466143 I e manLeu1.NW_012103587v1 498015 878 + 6255621 I e macNem1.NW_012010578v1 10590294 902 - 16319837 I e rheMac8.chr11 123941472 1124 + 133663169 I a score=117921.000000 s hg38.chr12_KI270834v1_alt 20720 35 + 119498 t-ctatctatctatctatctatctatctatctatct s panTro5.chr12 127306957 35 + 137163284 t-ctatctatctatctatctatctatctatctatct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657903 35 + 135337776 t-ctatctatctatctatctatctatctatctatct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170788 35 - 8369578 t-gtatctatctctccatccatccatcctattatct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818894 35 + 106955855 tcctatctat-tatctatctatctatctatctatct i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128189963 35 + 137757926 t-ctatctatctatctatctatctatctatctatct i macFas5.chr11 I 4 I 17 s cerAty1.NW_012001186v1 12212341 32 + 20526591 t-ccat---tctatctatctatctatctatctatct i cerAty1.NW_012001186v1 I 4 I 1 s chlSab2.chr11 119185272 35 + 128539186 t-ctatctatctatctatctatctatctatctatct i chlSab2.chr11 C 0 I 376 s manLeu1.NW_012103587v1 498893 35 + 6255621 t-ctatctatctatctatctatctatctatctatct i manLeu1.NW_012103587v1 I 878 C 0 s colAng1.NW_012116043v1 4561042 35 - 8658521 t-ctatgtatctatctatccatccacccatgtatct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114765755 35 + 124281992 c-cttcatttcttccttcctttctttctcccttccc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 410009 35 - 9212255 T-CTCTATTTCCCTGTTGCTGTCTCTATCtctgtct i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e mm10.chr5 124776279 362 + 151834684 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e otoGar3.GL873618 4252190 261 + 7922563 I e aotNan1.NW_018491581v1 1519701 346 + 5364348 I e cebCap1.NW_016107484v1 2823438 899 + 4466143 I e macNem1.NW_012010578v1 10590294 902 - 16319837 I e rheMac8.chr11 123941472 1124 + 133663169 I a score=33275.000000 s hg38.chr12_KI270834v1_alt 20755 15 + 119498 atcca--------------------tccatccatc s panTro5.chr12 127306992 35 + 137163284 atctatctgtctatctatctatctgtccatccatc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657938 19 + 135337776 atcta----------------tctgtccatccatc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170823 15 - 8369578 atcta--------------------tccatccatc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818929 15 + 106955855 atcta--------------------tctatctatc i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128190015 15 + 137757926 ctcta--------------------cccatccatc i macFas5.chr11 I 17 C 0 s cerAty1.NW_012001186v1 12212374 14 + 20526591 -tcta--------------------tctatctatc i cerAty1.NW_012001186v1 I 1 I 833 s manLeu1.NW_012103587v1 498928 15 + 6255621 atcta--------------------tctatctatc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4561077 15 - 8658521 atcta--------------------tccatccatc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114765790 14 + 124281992 atcca--------------------tccttccat- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 410044 13 - 9212255 gtcta--------------------tctgccta-- i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e mm10.chr5 124776279 362 + 151834684 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e otoGar3.GL873618 4252190 261 + 7922563 I e aotNan1.NW_018491581v1 1519701 346 + 5364348 I e cebCap1.NW_016107484v1 2823438 899 + 4466143 I e chlSab2.chr11 119185307 376 + 128539186 I e macNem1.NW_012010578v1 10590294 902 - 16319837 I e rheMac8.chr11 123941472 1124 + 133663169 I a score=10233.000000 s hg38.chr12_KI270834v1_alt 20770 30 + 119498 ----------------ctgtctatttatcatctcgatcatctatt-t s panTro5.chr12 127307027 30 + 137163284 ----------------ctgtctatttatcatctcgatcatctatt-t i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657957 30 + 135337776 ----------------ctgtctatttatcatctcgatcatctatt-t i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170838 30 - 8369578 ----------------ctgtctatttatcatctcgatcatctatt-t i gorGor5.CYUI01015152v1 C 0 I 4 s nomLeu3.chr10 97818944 30 + 106955855 ----------------ctgtctatttatcatctcgatcatctatt-t i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128190030 30 + 137757926 ----------------atccctatctatcatctattttatctatca- i macFas5.chr11 C 0 I 7 s manLeu1.NW_012103587v1 498943 12 + 6255621 -----------------tgtctatctatc------------------ i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4561092 25 - 8658521 ----------------ctgcctatctatc----tatctatctatc-- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114765804 30 + 124281992 ctatatctctctctccctacccatccatcc----------------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 410057 15 - 9212255 ---------------cctacctacccgtcc----------------- i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e mm10.chr5 124776279 362 + 151834684 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e otoGar3.GL873618 4252190 261 + 7922563 I e aotNan1.NW_018491581v1 1519701 346 + 5364348 I e cebCap1.NW_016107484v1 2823438 899 + 4466143 I e chlSab2.chr11 119185307 376 + 128539186 I e cerAty1.NW_012001186v1 12212388 833 + 20526591 I e macNem1.NW_012010578v1 10590294 902 - 16319837 I e rheMac8.chr11 123941472 1124 + 133663169 I a score=2548.000000 s hg38.chr12_KI270834v1_alt 20800 1 + 119498 t s gorGor5.CYUI01015152v1 8170872 1 - 8369578 t i gorGor5.CYUI01015152v1 I 4 C 0 s macFas5.chr11 128190067 1 + 137757926 t i macFas5.chr11 I 7 I 28 s cerAty1.NW_012001186v1 12213221 1 + 20526591 t i cerAty1.NW_012001186v1 I 833 C 0 s manLeu1.NW_012103587v1 498955 1 + 6255621 t i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4561117 1 - 8658521 t i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114765834 1 + 124281992 t i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 410072 1 - 9212255 t i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e mm10.chr5 124776279 362 + 151834684 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e otoGar3.GL873618 4252190 261 + 7922563 I e aotNan1.NW_018491581v1 1519701 346 + 5364348 I e cebCap1.NW_016107484v1 2823438 899 + 4466143 I e chlSab2.chr11 119185307 376 + 128539186 I e macNem1.NW_012010578v1 10590294 902 - 16319837 I e rheMac8.chr11 123941472 1124 + 133663169 I e nomLeu3.chr10 97818974 0 + 106955855 C e panPan2.chr12 125657987 0 + 135337776 C e panTro5.chr12 127307057 0 + 137163284 C a score=2818.000000 s hg38.chr12_KI270834v1_alt 20801 1 + 119498 a s gorGor5.CYUI01015152v1 8170873 1 - 8369578 a i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123942596 1 + 133663169 a i rheMac8.chr11 I 1124 C 0 s macFas5.chr11 128190096 1 + 137757926 a i macFas5.chr11 I 28 C 0 s macNem1.NW_012010578v1 10591196 1 - 16319837 a i macNem1.NW_012010578v1 I 902 C 0 s cerAty1.NW_012001186v1 12213222 1 + 20526591 a i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119185683 1 + 128539186 a i chlSab2.chr11 I 376 C 0 s manLeu1.NW_012103587v1 498956 1 + 6255621 a i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4561118 1 - 8658521 a i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114765835 1 + 124281992 g i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 410073 1 - 9212255 g i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e mm10.chr5 124776279 362 + 151834684 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e otoGar3.GL873618 4252190 261 + 7922563 I e aotNan1.NW_018491581v1 1519701 346 + 5364348 I e cebCap1.NW_016107484v1 2823438 899 + 4466143 I e nomLeu3.chr10 97818974 0 + 106955855 C e panPan2.chr12 125657987 0 + 135337776 C e panTro5.chr12 127307057 0 + 137163284 C a score=146448.000000 s hg38.chr12_KI270834v1_alt 20802 32 + 119498 tctatctatcta------------------tctatctatctatctatcta s panTro5.chr12 127307057 26 + 137163284 ------tatcta------------------tctatctatctatctatcta i panTro5.chr12 C 0 C 0 s panPan2.chr12 125657987 26 + 135337776 ------tatcta------------------tctatctatctatctatcta i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170874 32 - 8369578 tctatctatcta------------------tctatctatctatctatcta i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97818974 26 + 106955855 ------taccta------------------tctatttatctatctatcta i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123942597 32 + 133663169 tccatccatcca------------------tccatccatccatccatcca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128190097 48 + 137757926 tctatctatcca--tccatccatccatccatccatccatccatccatcca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10591197 32 - 16319837 tccatccatcca------------------tccatccatccatccatcca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12213223 32 + 20526591 tctatctatcta------------------tccatccatccatccatcca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119185684 32 + 128539186 tccatccatcca------------------tccatccatccatccatcca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 498957 32 + 6255621 tctatctatcta------------------tctatctatcCATCCATCCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4561119 32 - 8658521 tctatctatcta------------------tctatctatctatctatcta i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114765836 29 + 124281992 tctatctaccca------------------cctacccatc---CTGTCCC i calJac3.chr9 C 0 I 11 s saiBol1.JH378194 410074 32 - 9212255 tctgtctgtctg------------------tctgtctgtctctctctctc i saiBol1.JH378194 C 0 I 10 s otoGar3.GL873618 4252451 44 + 7922563 ----tctatccagggtgatagagtgaaac-tctgtct-cCAAGATAATTA i otoGar3.GL873618 I 261 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e mm10.chr5 124776279 362 + 151834684 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e aotNan1.NW_018491581v1 1519701 346 + 5364348 I e cebCap1.NW_016107484v1 2823438 899 + 4466143 I a score=31122.000000 s hg38.chr12_KI270834v1_alt 20834 3 + 119498 tct s panTro5.chr12 127307083 3 + 137163284 tct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125658013 3 + 135337776 tct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170906 3 - 8369578 tct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97819000 3 + 106955855 tct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123942629 3 + 133663169 tcc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128190145 3 + 137757926 tcc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10591229 3 - 16319837 tcc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12213255 3 + 20526591 tct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119185716 3 + 128539186 tcc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 498989 3 + 6255621 TCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4561151 3 - 8658521 tct i colAng1.NW_012116043v1 C 0 I 280 s calJac3.chr9 114765876 3 + 124281992 TCT i calJac3.chr9 I 11 C 0 s saiBol1.JH378194 410116 3 - 9212255 tct i saiBol1.JH378194 I 10 C 0 s cebCap1.NW_016107484v1 2824337 3 + 4466143 tct i cebCap1.NW_016107484v1 I 899 C 0 s aotNan1.NW_018491581v1 1520047 3 + 5364348 tct i aotNan1.NW_018491581v1 I 346 C 0 s otoGar3.GL873618 4252495 3 + 7922563 TCT i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e mm10.chr5 124776279 362 + 151834684 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I a score=526352.000000 s hg38.chr12_KI270834v1_alt 20837 48 + 119498 atctatctggatatttaggaggagatttattatgaggtattgactcat s panTro5.chr12 127307086 48 + 137163284 atctatctggatatttaggaggagatttattatgaggtattgactcat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125658016 48 + 135337776 atctatctggatatttaggaggagatttattatgaggtattgactcat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170909 48 - 8369578 atctatctggatacttaggaggagatttattatgaggtattgactcat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97819003 48 + 106955855 atctgtctggatatttaggaagagatttattatgaggtattgactcat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123942632 48 + 133663169 atccatctggatatttaggaagagatttattatgaggcattgactcat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128190148 48 + 137757926 atccatctggatatttaggaagagatttattatgaggcattgactcat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10591232 48 - 16319837 atccatctggatatttaggaagagatttattatgaggcattgactcat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12213258 48 + 20526591 atctatctgtatatttaggaagagatttattatgaggcattgactcat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119185719 48 + 128539186 atccatctggatatttaggaagagatttattatgaggcattgactcat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 498992 48 + 6255621 ATCCatctggatatttaggaagagatttattatgaggcattgactcat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4561434 48 - 8658521 atctatctggatatttaggaagagatttattatgaggcattgactcat i colAng1.NW_012116043v1 I 280 C 0 s calJac3.chr9 114765879 48 + 124281992 ATCTGTCtagatattttggaagagatttattatgaggtattgactcat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 410119 48 - 9212255 gtctgtcCagatatttgggaagagatttattatgaggtattgactcgt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2824340 48 + 4466143 gtctgtctagatatttggaaagagatttattatgaggtattgactcat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1520050 48 + 5364348 GTCTGTCtagatatttgggaagagatttattatgaggtattgactcat i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4252498 48 + 7922563 AGGtagatcgatatctaggaagagatttattatgaagtattgactgat i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e mm10.chr5 124776279 362 + 151834684 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I a score=2308179.000000 s hg38.chr12_KI270834v1_alt 20885 233 + 119498 gtgatgatagggtctgattactctcacaatctgccatctgcaagctggaggaccaggaaggccagtagca---tttgaagttctgacagtgagagagccaatagtgtagactcgtgtctgggtctgagggcctgagaacccgaagtgccaagggtagaagcccagtgccctggctcagtcagtcaggcagcaccagtgtaacctccctccatccttctgttctgttcagtcttcaa-- s panTro5.chr12 127307134 194 + 137163284 gtgatgatagggtctgattactctcacaatctgccatctgcaagctggaggaccaggagggccagtagca---tttgaagttctgacagtgagagagccaatagtgtagactcgtgtctgggtctgagggcctgagaacccgaagtgccaagggtagaagcccagtgccctggctcagtcagtcaggcaacaccagt----------------------------------------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125658064 200 + 135337776 gtgatgatagggtctgattactctcacaatctgccatctgcaagctggaggaccaggagggccagtagca---tttgaagttctgacagtgagagagccaatagtgtagactcgtgtctgggtctgagggcctgagaacccgaagtgccaagggtagaagcccagtgccctggctcagtcagtcaggcaacaccagtgtaacc----------------------------------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8170957 220 - 8369578 gtgatgatagggtctgattactctcacaatctgccatctgcaagctggaggaccaggaaggccagtagca---tttgaagttctgacagtgagagagccaataatgtagactcgtgtctgggtctgaaggcctgagaacccgaagt-------------gcccagtgccctggctcagtcagtcaggcagcaccagtgtaacctccctccatccttctgttctgttcagtcttcaa-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97819051 233 + 106955855 gtgatgatagggtctgattactctcacaatctgccatctgcaagctggaggaccaggaaagccagtagca---tttggagttctgacagtgagagagccagtagtgtagacccctatctgggtctgaaggcctgagaacccgaagagccaagggtagaaccccagtgccctggctcaggcagtcaggcagcaccgacgtaacctccctccatccttctgttctgttcagtcttcaa-- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123942680 231 + 133663169 gtgatgacagggtctgattactctcacaatctgccatctgcaagctggagaaccaggaaagccagtagcg---tttgaagttctaccagtgagagagcccatagtgtagattcctgtctgggtctgaaggcctgagaacccgaagtgccaagggtagaagcccagtgccctggttcaagcagtcaggcagccccaatgtaacctccctccatccttctgttctgttcggttttc---- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128190196 231 + 137757926 gtgatgacagggtctgattactctcacaatctgccatctgcaagctggagaaccaggaaagccagtagcg---tttgaagttctaccagtgagagagcccatagtgtagattcctgtctgggtctgaaggcctgagaacccgaagtgccaagggtagaagcccagtgccctggttcaagcagtcaggcagcaccaatgtaacctccctccatccttctgttctgttcggtcttc---- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10591280 231 - 16319837 gtgatgacagggtctgattactctcacaatctgccatctgcaagctggagaaccaggaaagccagtagcg---tttgaagttctaccagtgagagagcccatagtgtagattcctgtctgggtctgaaggcctgagaacccgaagtgccaagggtagaagcccagtgccctggttcaagcagtcaggcagcaccaatgtaacctccctccatccttctgttctgttcggtcttc---- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12213306 231 + 20526591 gtgatgacagggtctgattactctcacaatctgccatctgcaagctggagaaccaggaaagccagtagcg---tttgaagttctaccagtgagagagcccatagtgtagatgcctgtctgggtctgaaggcctgagaacccgaagtgccaagggtagaagcccagtgccctggttcaagcagtcaggcagcaccaatgtaacctccctccatccttctgttctgttcggtcttc---- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119185767 231 + 128539186 gtgatgacagggtctgattactctcacaatctgccatctgcaagctggagaaccaagaaagccagtagcg---tttgaagttctaccagtgagagagcccatagtgtagatgcctgtctgggtctgaaggcctgagaacccgaagtgccaagggtagaagcccagtgccctggctcaagcagtcaggcagcaccaatgtaacctccctccatccttctgttctgttcggtcttc---- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 499040 231 + 6255621 gtgatgacagggtctgattactctcacaatctgctatctgcaagctggagaaccaggaaagccagtagcg---tttgaagttctaccagtgagagagcccatagtgtagatgcctgtctgggtctgaaggcctgagaacctgaagtgccaagggtagaagcccagtgccctggttcaagcagtcaggcagcaccaatgtaacctccctccatccttctgttctgtttggtcttc---- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4561482 231 - 8658521 gtgatgatagggtctgattactctcacaatctgccatctgcaagctggagaaccaggaaagccagcagtg---tttgaagttctaccagtgcgagagccaatagtgtagatgcctgtctgggtctgaaggcctgagaacccgaagtgccaagggtagaagcccagtgccctggttcaagcagtcaggcagcaccaatgtaacctccctccatccttctgttctgttcagtcttc---- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114765927 229 + 124281992 gtgatgatagag--tgattactctcatgatctgccatctgcgagctggagaaccaggaaggctagtaggg---tttgaagttctgactgtgagagagccagtagtgtagattcctgtctgggtctgaaggcctgagaacccgaagtgcccagggtagaagcccagtgccctggctcaagcagtcaggcagcaccagtgcaaccttcctccatccttccattctgttcagtcttc---- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 410167 231 - 9212255 gtgatgatagagtctgattactctcatcatctgccatttgcaagctggagaaccaggaagcctagtagtg---tttgaagttctgacagtgagagagccggtagtgtagattcctgtctgggtctgaaggcctgagaacccgaagtgcccagggtagaagcccagtgccctggctcaagcagtcaggcagccccagtgccaccttcctccatccttccattctgttcggtcttc---- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2824388 231 + 4466143 gtgatgacagagtctgattactctcatgatctgccatctgcaagctggagaaccaggaaggctagtagtg---tttgaagttctgacagtgagagaaccagtagtgtagattcctgtctgggtctgaaggcctgagaacccgaagtgcccagggtagaagcccagtgccctggctcaagcagtcaggcagccccagtgcaaccttcctccatccttccgttctgttcagtcttc---- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1520098 230 + 5364348 gtaatgatagagtctgattacgctcgtgatctgccatctgcaagctggagaaccaggaaggctagtagtg---tttgaagttctggcagtgagagagccagtagtgtagattcctgtctgggtctgaaggcctgagaacccaaagtgcccagggtagaagccgagtgccctggctcaagcagtcaggcagca-cagtgcaaccttcctccatccttccgtcctgttcagtcttc---- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4252546 215 + 7922563 gtgattatggaggctgattaatt------cccactgtctgcaagctggggaaccagcaaaaccagtgatgcaacttgcaggtctgactaccagagagccaacagtgtgaactccaatctgggtctgaa-gcctgataaccatgagccctgtcaggagaagctga-tatcccagctcaggcagtcagg-------------acctccctccatctttttgttctaatcagtcttcaa-- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124776641 184 + 151834684 GAGAGGTTGGAGGCATGTTAGTATCCTAGCCTGCCGTTGGCCAGCTGGACAGTCAGG----------------ACCGAAGGCC------AGAGGGAGCC----------ACTTACATTTGGGTCTGAAGCCCTGAG------TAATGTC-AGAGTACAAGGCCACTAGCCCAGCCAAAGTGGAAAA-------------AGCCTCTCTTTTTCCTTTGGTTCCACCCAGTTCTC--GA i mm10.chr5 I 362 I 151 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I a score=4131.000000 s hg38.chr12_KI270834v1_alt 21118 31 + 119498 tggattagatgatcaggcagcaccaatgtaa s panTro5.chr12 127307328 4 + 137163284 ---------------------------gtaa i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8171177 31 - 8369578 tggattagatgatcaggcagcaccaatgtaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97819284 31 + 106955855 tgtattagatgaTCAGGCAGCACTGATGTAA i nomLeu3.chr10 C 0 I 256 s otoGar3.GL873618 4252761 10 + 7922563 cagattggat--------------------- i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e mm10.chr5 124776825 151 + 151834684 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I e aotNan1.NW_018491581v1 1520328 0 + 5364348 C e cebCap1.NW_016107484v1 2824619 0 + 4466143 C e saiBol1.JH378194 410398 0 - 9212255 C e calJac3.chr9 114766156 0 + 124281992 C e colAng1.NW_012116043v1 4561713 0 - 8658521 C e manLeu1.NW_012103587v1 499271 0 + 6255621 C e chlSab2.chr11 119185998 0 + 128539186 C e cerAty1.NW_012001186v1 12213537 0 + 20526591 C e macNem1.NW_012010578v1 10591511 0 - 16319837 C e macFas5.chr11 128190427 0 + 137757926 C e rheMac8.chr11 123942911 0 + 133663169 C e panPan2.chr12 125658264 0 + 135337776 C a score=445588.000000 s hg38.chr12_KI270834v1_alt 21149 84 + 119498 cctccctccatccttctgttctgttcagtctttaatggattagatgaggcccacccactttggggagggtcatctgcttttctc s panTro5.chr12 127307332 84 + 137163284 cctccctccatccttctgttctgttcagtctttaatggattagatgaggcccacccactttggggagggtcatctgcttttctc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125658264 82 + 135337776 --tccctccatccttctgttctgttcagtctttaatggattagatgaggcccacccactttggggagggtcatctgcttttctc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8171208 84 - 8369578 cctccctccatccttctgttctgttcagtctttaatggattagatgaggcccacccactttggggagggtcatctgcttttctc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97819571 79 + 106955855 cctccctccatcc-----ttctgttcagtcttcaatggattagatgaggcccacccactttggggagggtcatctgcttttctc i nomLeu3.chr10 I 256 C 0 s rheMac8.chr11 123942911 47 + 133663169 ---------------------------------aacggattagatgaggcccacccactttggggagggtcatctgcttt---- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128190427 47 + 137757926 ---------------------------------aacggattagatgaggcccacccactttggggagggtcatctgcttt---- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10591511 47 - 16319837 ---------------------------------aacggattagatgaggcccacccactttggggagggtcatctgcttt---- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12213537 47 + 20526591 ---------------------------------aacagattagatgaggcccacccactttggggagggtcatctgcttt---- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119185998 47 + 128539186 ---------------------------------aacggattcgatgaggcccacccactttggggagggtcatctgcttt---- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 499271 47 + 6255621 ---------------------------------aacggattagatgaggcccacccactttggggagggtcacctgcttt---- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4561713 47 - 8658521 ---------------------------------aacggattagaggaggcccacccacttcggggagggtcatctgcttt---- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114766156 51 + 124281992 ---------------------------------agcagattagatgaggcccacccactttgaggagggtcatctgcttttctc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 410398 51 - 9212255 ---------------------------------agcagattagatgaggcccactcattttgaggagggtcatctgcttttctc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2824619 51 + 4466143 ---------------------------------agcagattagatgaggcccactcactttgaggagggtcacctgcttttctc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1520328 51 + 5364348 ---------------------------------agcagattagatgaggcccacccactttgaggagggtcatctgcttttctc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4252771 44 + 7922563 ----------------------------------aggggt------agggctgtctacactgggtagggctgtctgctctactc i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e mm10.chr5 124776825 151 + 151834684 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I a score=1226859.000000 s hg38.chr12_KI270834v1_alt 21233 123 + 119498 aa-atgctaa-----tctcttcctgaaacacactcatggacactcccagaaataatgtttagcca---gctacctgggcatcctgtggcccagtcaagttgacacatgaaagcaaacaccacaTTCTTTCTC s panTro5.chr12 127307416 123 + 137163284 aa-atgctaa-----tctcttcctgaaacacactcatggacactcccagaaataatgtttagcca---gctacctgggcatcctgtggcccagtcaagttgacacatgaaagcaaacaccacaTTCTTTCTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125658346 123 + 135337776 aa-atgctaa-----tctcttcctgaaacacactcatggacactcccagaaataatgtttagcca---gctacctgggcatcctgtggcccagtcaagttgacacatgaaagcaaacaccacaTTCTTTCTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8171292 123 - 8369578 aa-atgctaa-----tctcttcctgaaacacactcatggacactcccagaaataatgtttagcca---gctacctgggcatcttgtggcccagtcaagttgacacatgaaagcaaccaccacaTTCTTTCTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97819650 123 + 106955855 aa-atgctaa-----tctcttcctgaaacacactcatggacactcccagaagtaatgtttagccg---gctacctgggcatcttgtggcccagtcaagttgacacacgaaagcaaccaccacaTTCTTTCTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123942958 114 + 133663169 ---------------cctcttcctgaaacacactcatgggcactcccagaaataatgtttagcca---gctacctgggcatcttgtggcccagtcaagttgacacatgaaagcaaccaccacaTTTTTTCTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128190474 114 + 137757926 ---------------cctcttcctgaaacacactcatgggcactcccagaaataatgtttagcca---gctacctgggcatcttgtggcccagtcaagttgacacatgaaagcaaccaccacaTTTTTTCTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10591558 114 - 16319837 ---------------cctcttcctgaaacacactcatgggcactcccagaaataatgtttagcca---gctacctgggcatcttgtggcccagtcaagttgacacatgaaagcaaccaccacaTTTTTTCTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12213584 114 + 20526591 ---------------cctcttcctgaaacacactcatgggcactcccagaaataatgtttagcca---gctacctgggcatcttgtggcccagtcaagttgacatatgaaagcaaccaccacaTTTTTTCTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119186045 114 + 128539186 ---------------tctcttcctgaaacatactcacggacactcccagaaataatgtttagcca---gctacctgggcatcttgtggcccagtcaagttgacacatgaaagcaaccaccacaTTTTTTCTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 499318 114 + 6255621 ---------------tctcttcctgaagcacactcatgggcactcccagaaataatgtttagcca---gctacctgggcatcttgtggcccagtcaagttgacgcatgaaagcaaccaccacaTTTTTTCTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4561760 114 - 8658521 ---------------tctcttcctgaaacacactcatggacactcccagaaataatgtttagcca---gctacctgggcatcttgtggcctagtcaagttgacacatgaaagcaaccaccacaTTTTTTCTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114766207 120 + 124281992 aa-atgctaa-----tctcttcctgaaacacactcatggacactcccagagataatgtttagcca---gctacctgggcatcctgtggcccagtcaagttgacacataaaagcaaccaccaca---TTTCTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 410449 119 - 9212255 aa-atgtgaa-----tctcttcctgaaacacactcatggacactcccagagataatgtttagcca---gctacctgggcatcctgtggcccagtcaagttgacacataaaagcaaccaccgca----TTCTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2824670 119 + 4466143 aa-atactaa-----tcccttcctgaaacacactcatggacactcccagagataatgtttagcca---gctacctgggcatcctgtggtccagtcaagttaacacatcaaagcaaccaccgca----TTCTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1520379 119 + 5364348 aa-acgctaa-----tctcttcctgaaacacactcatggacactcccagagataatgtttagcca---gctacctgggcatcctgtggcccagtcaagttgacacataaaagcaactaccaca----TTCTC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4252815 116 + 7922563 agtctaccagt----tcacgtacta----accttcacggaca----cagaaataatgtttagccacctgttgtctgggcatcctgtagcccagtcaagttgacacataaaattaatgattaca----TTATA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124776976 96 + 151834684 ----------aagtgtcagtctctgagatactctcacagacacacccaggaataac-ccaggaca---gctccctggac------------aatcgagctgacacccggagttgacA----------GTGTT i mm10.chr5 I 151 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I e dasNov3.JH568189 793222 25 - 1116856 I e canFam3.chr26 33119669 1216 - 38964690 I a score=49552.000000 s hg38.chr12_KI270834v1_alt 21356 3 + 119498 TAT s panTro5.chr12 127307539 3 + 137163284 TAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125658469 3 + 135337776 TAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8171415 3 - 8369578 TAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97819773 3 + 106955855 TAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123943072 3 + 133663169 TAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128190588 3 + 137757926 TAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10591672 3 - 16319837 TAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12213698 3 + 20526591 TAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119186159 3 + 128539186 TAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 499432 3 + 6255621 TAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4561874 3 - 8658521 TAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114766327 3 + 124281992 TAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 410568 3 - 9212255 TAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2824789 3 + 4466143 TAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1520498 3 + 5364348 TAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4252931 3 + 7922563 TAT i otoGar3.GL873618 C 0 I 16 s mm10.chr5 124777072 3 + 151834684 CAT i mm10.chr5 C 0 I 4 s canFam3.chr26 33120885 3 - 38964690 TAT i canFam3.chr26 I 1216 C 0 s dasNov3.JH568189 793247 3 - 1116856 TAT i dasNov3.JH568189 I 25 C 0 e micMur3.chr21 9428824 1115 - 31815103 I e proCoq1.NW_012154285v1 6682085 1258 - 9870158 I a score=4301987.000000 s hg38.chr12_KI270834v1_alt 21359 237 + 119498 TCTGCACCTATAGTCACAGTGATGAATTTGGAAATGACACCCACTTCCTTCTGTGCACCAGAAAACATATGTTTTGC-ATTTGGCTTA-TAACAGGCGCTGTCCATGTATCTAGGTGGGGCCCCCGCCGGCCCAGCAGGAACCGGCAAAACCGAGACCACCAAGGACCTGGCGAAAGCCTTGGGCTTGCTCTGTGTTGTCACCAACTGTGGCGAAGGCATGGATTACAGGGTAAGGCCT s panTro5.chr12 127307542 237 + 137163284 TCTGCACCTATAGTCACAGTGATGAATTTGGAAATGACACCCATTTCCTTCTGTGCACCAGAAAACATATGTTTTGC-ATTTGGCTTA-TAACAGGCGCTGTCCATGTATCTGGGTGGGGCCCCCGCCGGCCCAGCAGGAACCGGCAAAACCGAGACCACCAAGGACCTGGCGAAAGCCTTGGGCTTGCTCTGTGTTGTCACCAACTGTGGCGAAGGCATGGATTACAAGGTAAGGCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125658472 237 + 135337776 TCTGCACCTATAGTCACAGTGATGAATTTGGAAATGACACCCATTTCCTTCTGTGCACCAGAAAACATATGTTTTGC-ATTTGGCTTA-TAACAGGCGCTGTCCATGTATCTGGGTGGGGCCCCTGCCGGCCCAGCAGGAACCGGCAAAACCGAGACCACCAAGGACCTGGCGAAAGCCTTGGGCTTGCTCTGTGTTGTCACCAACTGTGGCGAAGGCATGGATTACAAGGTAAGGCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8171418 237 - 8369578 TCTGCACCTATAGTCACAGGGATGAATTTGGAAATGACACCCACTTCCTTCTGTGCACCAGAAAACATACGTTTTGC-ATTTGGCTTA-TAACAGGCGCTGTCCATGTATCTGGGTGGGGCCCCCGCCGGCCCAGCAGGAACCGGCAAAACCGAGACCACCAAGGACCTGGCGAAAGCCTTGGGCTTGCTCTGTGTTGTCACCAACTGTGGCGAAGGCATGGATTACAAGGTAAGGCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97819776 237 + 106955855 TCTGCACCGATAGTCACAGTGATGAATTTGGAAATGACACCCACTTCCTTCTGTGCACCAGAAAACATATGTTTTGC-ATTTGGCTTA-TAACAGGCGCTGTCCATGTATCTGGGTGGGGCTCCCGCCGGCCCAGCAGGTACCGGCAAAACTGAGACCACCAAGGACCTGGCGAAAGCCCTGGGCTTGCTCTGCGTTGTCACCAACTGTGGCGAAGGCATGGATTACAAGGTAAGGCCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123943075 237 + 133663169 TCTGCACCTGTAGTCACAGTGATGAATTTGGAAATGACACCCACTTCCTTCTGTGCACCAGAAAACATATGTTTTGC-ATTTGGCTTA-TAACAGGCACTGTCTATGTATCTGGGTGGGGCCCCTGCTGGCCCAGCAGGTACCGGCAAAACTGAGACCACCAAGGACCTGGCGAAAGCCTTGGGTTTGCTCTGCGTTGTCACCAACTGTGGCGAAGGCATGGATTACAAGGTAAGGCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128190591 237 + 137757926 TCTGCACCTGTAGTCACAGTGATGAATTTGGAAATGACACCCACTTCCTTCTGTGCACCAGAAAACATATGTTTTGC-ATTTGGCTTA-TAACAGGCACTGTCTATGTATCTGGGTGGGGCCCCTGCTGGCCCAGCAGGTACCGGCAAAACCGAGACCACCAAGGACCTGGCGAAAGCCTTGGGTTTGCTCTGCGTTGTCACCAACTGTGGCGAAGGCATGGATTACAAGGTAAGGCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10591675 237 - 16319837 TCTGCACCTGTAGTCACAGTGATGAATTTGGAAATGACACCCACTTCCTTCTGTGCACCAGAAAACATATGTTTTGC-ATTTGGCTTA-TAACAGGCACTGTCTATGTATCTGGGTGGGGCCCCTGCTGGCCCAGCAGGTACCGGCAAAACCGAGACCACCAAGGACCTGGCGAAAGCCTTGGGTTTGCTCTGCGTTGTCACCAACTGTGGCGAAGGCATGGATTACAAGGTAAGGCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12213701 237 + 20526591 TCTGCACCTGTAGTCACAGTGATGAATTTGGAAATGACACCCACTTCCTTCTGTGCACCAGAAAACATATGTTTTGC-ATTTGGCTTA-TAACAGGCACTGTCCATGTATCTGGGTGGGGCCCCTGCTGGCCCAGCAGGTACTGGCAAAACCGAGACCACCAAGGACCTGGCGAAAGCCTTGGGTTTGCTCTGCATTGTCACCAACTGTGGTGAAGGCATGGATTACAAGGTAAGGCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119186162 237 + 128539186 TCTGCACCTGTAGTCACAGTGATGAATTTGGAAATGACACCCACTTCCTTCTGTGCACCAGAAAACATATGTTTTGC-ATTTGGCTTA-TAACAGGCACTGTCCATGTATCTGGGTGGGGCCCCTGCTGGCCCAGCAGGTACCGGCAAAACCGAGACCACCAAGGACCTGGCGAAAGCCTTGGGTTTGCTCTGCGTTGTCACCAACTGTGGTGAAGGCATGGATTACAAGGTAAGGCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 499435 237 + 6255621 TCTGCACCTGTAGTCACAGTGATGAATTTGGAAATGACACCCACTTCCTTCTGTGCACCAGAAAACATATGTTTTGC-ATTTGGCTTA-TAACAGGCACTGTCCATGTATCTGGGTGGGGCCCCTGCTGGCCCAGCAGGTACCGGCAAAACCGAGACCACCAAGGACCTGGCGAAAGCCTTGGGTTTGCTCTGCGTTGTCACCAACTGTGGCGAAGGCATGGATTACAAGGTAAGGCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4561877 237 - 8658521 TCTGCACCTGTAGTCACAGCGATGAATTTGGAAATGACACCCACTTCCTTCTGTGCGCCAGAAAGCATATGTTTTGC-ATTTGGCTTG-TAACAGGCACTGTCCATGTATCTGGGTGGGGCCCCTGCTGGCCCAGCAGGTACCGGCAAAACCGAGACCACCAAGGACCTGGCGAAAGCCTTGGGTTTGCTCTGCATTGTCACCAACTGTGGCGAAGGCATGGATTACAAGGTAAGGCCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114766330 235 + 124281992 TCTGCACCTGTTGTCACAGTGATGAATTTGGAAATGACGCCTGCTTCCTTCTGTGCACCAGAAAACAT--GTTTTGC-ATTTGGCTTA-TAACAGGCACTGTCCATGTATCTGGGTGGGGCCCCTGCTGGCCCAGCAGGTACCGGCAAAACTGAGACCACCAAGGACCTGGCAAAAGCTCTGGGCTTGCTCTGCGTTGTCACCAACTGTGGCGAAGGCATGGATTACAAGGTAAGGCCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 410571 235 - 9212255 TCTGTACCTGTTGTCACAGTGATGAATTTGGAAATGACGCCTGCTTCCTTCTGTGCACCAGAAAACAT--GTTTTGC-ATTTGGCTTA-TAACAGGCACTGTCCATGTATCTGGGTGGGGCCCCTGCTGGCCCCGCAGGTACTGGCAAAACTGAGACCACCAAGGACCTGGCAAAAGCCCTGGGCTTGCTCTGCGTTGTCACCAACTGTGGCGAAGGCATGGATTACAAGGTAAGGCCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2824792 235 + 4466143 TCTGCACCTGTTGTCACAGTGATGAATTTGGAAATGACGCCTGCTTCCTTCTGTGCACCAGAAAACAT--GTTTTGC-ATTTGGCTTA-TAACAGGCACTGTCCATGTACCTGGGTGGGGCCCCTGCTGGCCCAGCAGGTACCGGCAAGACTGAGACCACCAAGGACCTGGCAAAAGCCCTGGGCTTGCTCTGCGTTGTCACCAACTGTGGCGAAGGCATGGATTACAAGGTAAGGCCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1520501 235 + 5364348 TCTGTACCTGTTGTCACAGTGATGAATTTGGAAATGATGCCTGCTTCCTTCTGTGCACCAGAAAACAT--GTCTTGC-ATTTGGCTTA-TAACAGGCACTGTCCATGTATCTGGGTGGGGCCCCTGCTGGCCCAGCAGGTACCGGCAAAACTGAGACCACCAAGGACCTGGCAAAAGCCCTGGGCTTGCTCTGCGTTGTCACCAACTGTGGCGAAGGCATGGATTACAAGGTAAGGCCT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9429939 234 - 31815103 TCTGCACCTGTTGTCGCAGTAACGAATTGGGAAGTGACACCCGTTTCCTTCTGTGCGTCAGAAAACAC--GTTTC-C-CTCTGGCTTG-CCGCAGGCCCTGTCCATGTATCTGGGCGGTGCCCCTGCCGGCCCGGCGGGCACCGGCAAGACTGAGACCACCAAGGACCTGGCGAAAGCCCTGGGCTTGCTCTGCGTCGTCACCAACTGCGGCGAAGGCATGGATTACAAAGTAAGGCCT i micMur3.chr21 I 1115 I 631 s proCoq1.NW_012154285v1 6683343 234 - 9870158 TCTGCACCTGTCATCACAGTAACGAATTTGGAAGCGACACCTGTCTCCTTCTGTGCATCAGAAAACAC--GTTTA-C-CTTTGGCTTA-TTGCAGGCCCTGTCCATGTATCTGGGCGGCGCCCCTGCTGGCCCGGCAGGTACGGGCAAAACCGAGACCACCAAGGACCTGGCGAAAGCTCTGGGCTTGCTCTGCGTCGTAACCAACTGCGGCGAAGGCATGGATTACAAAGTAAGGCCT i proCoq1.NW_012154285v1 I 1258 C 0 s otoGar3.GL873618 4252950 235 + 7922563 TCTGTACCTATTGTCACACTGATGAATTTGGAAATGACACCTATTTCCTTCTGTTCATCAGAAAACAT--GTTTCAC-ATTTGGCTTA-TCACAGGCACTGTCCATGTATCTGGGTGGCGCCCCTGCTGGCCCAGCAGGGACTGGCAAAACTGAGACCACCAAGGACCTTGCAAAAGCCTTGGGCTTGCTCTGCGTTGTAACCAACTGCGGCGAAGGCATGGATTACAAAGTAAGGCTT i otoGar3.GL873618 I 16 C 0 s mm10.chr5 124777079 223 + 151834684 TCTACCCATGT-GTCCCAGAGATGTGTCCAGGAGTGGCACTCTTT-------------CAGAACACATGTGTTTTAC-ATGTGGCTGC-TCACAGGCGCTGTCCATGTATCTGGGAGGTGCCCCTGCTGGTCCAGCAGGAACCGGCAAGACAGAGACCACCAAGGACCTCGCCAAAGCCCTGGGCCTCCTGTGTGTTGTCACAAACTGTGGTGAAGGCATGGATTACAAGGTAAGAGCT i mm10.chr5 I 4 C 0 s canFam3.chr26 33120888 236 - 38964690 TCCACATATATTGTCACAGTGCT---TTGGGAAATGGCACCTGTTTCCTTGTGTGAATCAGACAACATGGGCTTTGTGGTTTGGCTCCTTAACAGGCGCTGTCCATGTATCTGGGAGGGGCCCCCGCTGGCCCAGCAGGTACTGGCAAAACCGAGACCACCAAGGATCTGGCCAAAGCCCTGGGCTTGCTCTGTGTTGTGACCAATTGTGGTGAAGGCATGGATTATAAGGTATGACCT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 793250 235 - 1116856 TCAACATATATTGTCACTGTGCTAAACCTGGAAATGACACCTGTTTCCTTATGTGAATCAGAAAGCAT--GTTTTGC-ATTTGGCTTG-TAACAGGCACTATCCATGTATCTGGGTGGGGCTCCTGCTGGCCCAGCAGGTACCGGCAAAACTGAGACCACTAAGGACCTCGCCAAAGCCTTGGGCTTGCTCTGTGTTGTAACTAACTGCGGAGAAGGCATGGATTACAAAGTAAGGCAT i dasNov3.JH568189 C 0 C 0 a score=3515134.000000 s hg38.chr12_KI270834v1_alt 21596 304 + 119498 GGCTGTCACCTTTGGTACTGGCTCATTAGGCAGAGAGCTTAAAGCA----GGACAT--------GGCATTTCACCTCCTAGTCTT---------TGACATGGCGACAGT-GGAAGAAGCT------AGTAGA-AAACCTTCCACCACCA----------------------------------------------------------------------------------------CAGCCCCAGAACCTAAGTGTGTCTGCTTAAAGACCCTGCTTTGTTAGCAGGATGTAGAGCAAGAGTCCCGGATTCACTACcctagtagggtcaggttgataatgtacgtgagtaaagcggccagc--aga--c-----a--agagagtggtgggatctgtggctaactggagagcaaaagtcc---atctaaagaggg s panTro5.chr12 127307779 305 + 137163284 GGCTGTCACCTTTGGTACTGGCTCATTAGGCAGAGAGCTTAAAGCA----GGACAT--------GGCATTTCACCTCCTAGTCTT---------TGACATGACGACAGTGGGAAGAAGCT------AGTAGA-AAACCTTCCACCACCA----------------------------------------------------------------------------------------CAGCCCCAGAACCTAAGTGTGTCTCCTTAAAGATCCTGCTTTGTTAGCAGGATGTAGAGCAAGAGTCCCGGATTTACTACcctagtagggtcaggtagataatgtacgtgagtaaagcagccagc--aga--c-----a--agagagtggtgggatctgtggctaaccggagagcaaaactcc---atgtaaagaggg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125658709 305 + 135337776 GGCTGTCACCTTTGGTACTGGCTCATTAGGCAGAGAGCTTAAAGCA----GGACAT--------GGCATTTCACCTCCTAGTCTT---------TGACATGACGACAGTGGGAAGAAGCT------AGTAGA-AAACCTTCCACCACCA----------------------------------------------------------------------------------------CAGCCCCAGAACCTAAGTGTGTCTCCTTAAAGATCCTGCTTTGTTAGCAGGATGTAGAGCAAGAGTCCCGGATTTACTACcctagtagggtcaggtagataatgtacgtgagtaaagcagccagc--aga--c-----a--agagagtggtgggatctgtggctaactggagagcaaaactcc---atgtaaagaggg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8171655 305 - 8369578 GGCTGTCACCTTTGGTACCGGCTCATTAGGCAGAGAGCTTAAAGCA----GGACAT--------GGCATTTCACCTCCTAGTCTT---------TGACATGACGACAGTGGGAAGAAGCT------AGTAGA-AAACCTTCCACCACCA----------------------------------------------------------------------------------------CAGCCCCAGAACCTAAGCGTGTCTGCTTAAAGATCCTGCTTTGTTAGCAGGATGTAGAGCAAAAGTCCCGGATTCACTACcctagtagggtcaggtggataatgtacatgagtaaagcggccagc--aga--c-----a--agagagtggtgggatctgtggctaactggagagcaaaactcc---atgtaaagaggg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97820013 305 + 106955855 TGCTGTCACCTTTGGTACTGGCTCATTAGGCAGAGAGCTTAAAGCA----GGACAT--------GGCATTTCACCTCCTAGTCTT---------TGACATGACGACAGCGGGAAGAAGCT------AGTAGA-AAACCTTCTACCACCA----------------------------------------------------------------------------------------CAGCCCCAGAACCTAAGTGTGTCTGCTTAAAGATCCTGCTTTGCTAGCAGGATGTAGAGcaagaatcccagattcactagcctagtagggtcaggtagataatgtacgtgagtaaagcggccagc--aga--c-----a--acagagtggtgggatctgtggctaactggagagcaaaactcc---atctaaagaggg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123943312 320 + 133663169 TGCTGTCACCTTTGGTACTGGCTCATTAGGTAGAGAGCTTAAAGCA----GGACAT--------GGCATTTCACCTCCTAGTCTTCT-GTGAAGTGACATGACGTCAGCGGGAAGAAGCT------AGGAGG-AAACCTTCCGCCACCA----------------------------------------------------------------------------------------CAGCCCCAGAACCCAAGTGTGTCTGCTTGACGATCCTGCTTCGCTAGCAGGAAGTAGAGcaagagtcccggattcactagcctaggagggtcaggtagatgatgtacgtgagtaaagcggccagc--aga--ccattgaatagagagtggtgggatctgtggctaactgcagagcaaaactcc---atctgaagaggg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128190828 320 + 137757926 TGCTGTCACCTTTGGTACTGGCTCATTAGGTAGAGAGCTTAAAGCA----GGACAT--------GGCATTTCACCTCCTAGTCTTCT-GTGAAGTGACATGACGTCAGCGGGAAGAAGCT------AGGAGG-AAACCTTCCGCCACCA----------------------------------------------------------------------------------------CAGCCCCAGAACCCAAGTGTGTCTGCTTGATGATCCTGCTTCGCTAGCAGGAAGTAGAGcaagagtcccggattcactagcctaggagggtcaggtagatgatgtacgtgagtaaagcggccagc--aga--ccattgaatagagagtggtgggatctgtggctaactgcagagcaaaactcc---atctgaagaggg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10591912 320 - 16319837 TGCTGTCACCTTTGGTACTGGCTCATTAGGTAGAGAGCTTAAAGCA----GGGCAT--------GGCATTTCACCTCCTAGTCTTCT-GTGAAGTGACATGACGTCAGCGGGAAGAAGCT------AGGAGG-AAACCTTCCGCCACCA----------------------------------------------------------------------------------------CAGCCCCAGAACCCAAGTGTGTCTGCTTGACGATCCTGCTTCGCTAGCAGGAAGTAGAGCAAGATTCCCGGATTCACTAgcctaggagggtcaggtagatgatgtacgtgagtaaagcggccagc--aga--ccattgaatagagagtggtgggatctgtggctaactgcagagcaaaactcc---atctgaagaggg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12213938 315 + 20526591 TGCTGTCACCTTTGGTACTGGCTCATTAGGTAGAGAGCTTAAAGCA----GGACAT--------GGCATTTCACCTCCTAGTCTTCT-GTGAAGTGACATGACATCAGCGGGAAGAAGCT------AGGAGG-AAACCTTCCGCCACCA----------------------------------------------------------------------------------------CAGCCCCAGAACCCAAGTGTGTCTGCTTGACGATCCTGCTTCGCTAGCAGGAAGTAGAGcaagagtcccggattcactagcctaggaaggtcaggtagatgatgtacgtgagtaaagcggccagc--aga--c-----aatagagagtggtgagatctgtggctaactgcagagcaaaactcc---atctgaagaggg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119186399 315 + 128539186 TGCTGTCACCTTTGGTACTGGCTCATTAGGTAGAGAGCTTAAAGCA----GGACAT--------GGCATTTCACCTCCTAGTCTTCT-GTGAAGTGACATGACGTCAGCAGGAAGAAGCT------AGGAGG-AAACCTTCCGCCACCA----------------------------------------------------------------------------------------CAGCCCCAGAACCCAAGTGTGTCTGCTTGAAGATCCTGCTTCGTTAGCAGGAAGTGGAGcaagagtcccggattcactagcctagtagggtcaggtagataatgtatatgagtaaagcggccagc--aga--c-----agtagagagaggtgggatctgcagctaactgcagagcaaaactcc---atctgaagaggg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 499672 316 + 6255621 TGCTGTCACCTTTGGTACTGGCTCATTAGGTAGAGAGCTTAAAGCA----GGACAT--------GGCATTTCACTTCCTAGTCTTCT-GTGAAGTGACATGACGTCAGTGGGAAGAAGCT------AGGAGG-AAACCTTCCGCCACCA----------------------------------------------------------------------------------------CAGCCCCAGAACCCAAGTGTGTCTGCTTGACGATCCTGCTTTGCTAGCAGGAAGTAGAGCAAGAGTCCCGGATTCACTAGCCTAGGAGGGTCAGGTAGATGATGTACGTGAGTAAAGCGGCCAGC--aga--ct----aatagagagtggtgggatctgtggctaactgcagagcaaaactcc---atctgaagaggg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4562114 315 - 8658521 TGCTGTCACCTTTGGTACTGGCTCATTAGGCAGAGAGCTTAAAGCA----GGACAT--------GGCATTTCACTTCCTAGTCTTCT-GTGAAGTGACATGATGTCAGCGGGAAGAAGCT------AGGAGG-AAACCTTCTGCCACCA----------------------------------------------------------------------------------------CAGCCCCAGAACCCAAGTGTGTCTGCTTGAAGGTCCTGCTTCGTTAGCAGGAAGTAGAGcaagagtcccggattcactagcctagtagcgtcaggtagatgatgtatgtgagtaaagcggccagc--aga--c-----aatagagagtggtgggatctgtggctaactggagagcaaaactcc---atctgaagaggg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114766565 314 + 124281992 TGCTGTCGCCGTTGGTACTGGCTCATTAGGTAGAGAGCTTCAAGTG----GGACAT--------GGCATTTCACCTCCTAGTCTTCC-ATGAAGTGACATGGTGACAGCGGGAAGAAGGC------AGTAGA-AAACCTTCCACCACCA----------------------------------------------------------------------------------------CAGTCTCGGAACCTAAATGTGTCTGCTTAAAGATTCTGCTTTGCTAGCAGGTTGTAGAGcaagagtcccggattcactagcctggtagggtcagatagacaatgtatgtga-taaagtggccggc--agg--t-----aatagagagtggtgggatctgtggctaacttgagagcaaaactcc---atctaaagaggg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 410806 315 - 9212255 TGCTGTTGCTGTTGGTGCTGGCTCATTGGGTAGAGAGCTGAAAGTG----GGACAC--------GGCATTTCACCTCCTAGTCTTCC-ATGAAGTGACATGGTGACAGCGGGAAGAAGGT------AGTAGA-AAACCTTCCACCCCCA----------------------------------------------------------------------------------------CAGTCTCAGAACCTAAATGTGTCTGCGTAAAGATTCTGCTTTGCTAGCAGGATATAGAGcaagagtccccgattcactagcctagtagagtcaggtagacaatgtatgcgagtaaagcggccgac--aga--c-----agtagagagtggtgggatctgcagcgaacttgagagccaaactcc---atctaaagaggg i saiBol1.JH378194 C 0 I 355 s cebCap1.NW_016107484v1 2825027 315 + 4466143 TGCTGTTGCTGTTTGTACTGGCTCATTAGGTAGAGAGCTTAAAGTG----GGACAC--------GGCATTTCACCTCCTGGTCTTCC-ATGAAGTGACACGGTGACAGTGGGAAGAAGGT------AGTAGA-AAGCCTGCCACCACCA----------------------------------------------------------------------------------------CAGTCTCAGGACACAAACGTGTCTGCTTAAAGATTCTGCTTTGCTAGCAGGATGTAGAGCAAGAGTCCCGGATTCACTAGCCTAGTAGCGTCAGGTAGACAATGTATGCGAGTAAAGCGGCCGGC--AGA--C-----AGTAGAGAGTGGTGGGATCTGTGGCTAACTTGAGAGCAAAACTCC---ATCTAAACAGGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1520736 315 + 5364348 TGCTGTCGCCGTTGGTACTGGTTCATTAGGTAGAGAGCTTCAAGTG----GGACAC--------GGCATTTCACCTCCTAGTCTTCC-ATGAAGTGACATGGTGACAGCGGGAAGAAGGT------AGTAGA-AAACCTCCCACCGCCA----------------------------------------------------------------------------------------CAGTCTCAGAACCTAAATGTATCTTCTTAGAGATTCTGCTTTGCTAGCAGGATGTAGAGcaagagtcccggattcactagcctagtagggtcagatagacaatgtacgtgagtaaagtggccggc--aga--c-----aatagagagtggtgggatctgtggctaacctgagagcaaaactcc---atctaaagaggg i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6683577 308 - 9870158 TGCTGTCACTTCTGGTCCTATCTTGTTAGGCAGAGAGCTTAAAGCG----GGACATGGCAGGAAGGCATTTCACCTCACTG-------------TGACATGGCGACAGCTGCAAGAATAT------GGTAGA-AAACCTCTGACCACCA----------------------------------------------------------------------------------------CAGTCCCAGAACTGGAATGTGTCTGCGTAAAGATTCTGCTTTGTCAGCAGCATGTAGAGCAGGAGTCCTGGACCACCTAgcgtaccggggttgggtagctaatgtgaatgagtaaagcagccggc--agaggc-----aatagggagtggtggggtctgtggccaagtggagaacagtgctct--------aaagggg i proCoq1.NW_012154285v1 C 0 I 3 s otoGar3.GL873618 4253185 401 + 7922563 TGCTGTCACTT------CTATCTTACAAGGCAGAGAGCTTAAAGTG----GGACATAGCAGGAAGGCATTTCACCTCGCTA-------------TGAGCTAGTGACAGCTGGAAGAATGTAGTGAAAGTAGA-AAACCTTTCATTACCAGGGTCcagcagatctcaacctgtgagtcacaacccacaggaactgtattaaagggctgcggcattaggaaggttgagaacaactgctgtaGTCTCAGAACTTAAATTTGTCTGCTTAGAGCTTCTGCTTTGTTAGGGGCATGTAGAGcaagagtcccaaacttcctggcctgccagggtcaggtagctaatgtaaatgagtcaagcagctggc--agagac-----gttagggagtgggggggtctgtggccaactggagaacaatgctct---gtctaaagaggg i otoGar3.GL873618 C 0 I 3 s mm10.chr5 124777302 209 + 151834684 CACCATCACTCCCAGTACCCGATTGCCCTGCAGAGGGCTTCTGGTG---CAGATAT--------GGT-----------------------------------------CAGGAAGTATGT------------------------CACC-----------------------------------------------------------------------------------------TGTCTCCTGAAATGACAAGTGACAGCTGGGAGG--------------------GTGGGGCAAGGGTCCTGAACTC---AGGCTGCTGAAGTCAG------------CATAAGGAG-----------------C-----AAGAGAGGGTGA-GGAAGATGTCG---ACTGCAGTACTGCACTCCTGAGTCTAGAGGGCG i mm10.chr5 C 0 I 1 s canFam3.chr26 33121124 293 - 38964690 CAGTGTCACTCCTGGTACTG--CTACTGGACAGAGAGCAGAACATG----GGACATGGTAGGAAGGCATTTCACCCCATACTCTTCC-ATGAAAAGACATGGAGACAGCTGGAGGAAGAG------AGCAGATAAATCTTTCAC--CCT----------------------------------------------------------------------------------------CGGTCTCAGAGCTTGTGTGTGTCTGCTT--------------GTTAGCAACATGTAGGCTAAACAtcgaaaactgaa-gtcccaccagagccatgta----atataaataag-aaagtagcaggtggaga--c-----catagagagtggtgagggccatggccagctggtggg-------cc---agagggagag-- i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 793485 286 - 1116856 GGGTGTCACTTTTGGTACTATTTTATT----AGAGAGCTCAGAGTGGTTGGTACATGGCAGGAAGGCATTCCATGTCATACTCTCTCAGGGAACTGACATGGCAGTGGTTGGGAGTATGT------AGTAGA-AAACGTTTTGCCACCA----------------------------------------------------------------------------------------CAGTCACAGAACTTGAATGTGT-----------------TTTGTTAGCAGCAAGTAGAGCAAGAGTCCCAAACATA----------AGTGTTTGCCAT--------CATGAATA-----GCCAAC--AGagac-----aatagagagtggtggagactgtggtcaactggagagcaatgccct---ccttaaaaggaa i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9430173 631 - 31815103 I a score=-21319.000000 s hg38.chr12_KI270834v1_alt 21900 4 + 119498 tgc--c s panTro5.chr12 127308084 5 + 137163284 cgct-c i panTro5.chr12 C 0 C 0 s panPan2.chr12 125659014 5 + 135337776 cgct-c i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8171960 5 - 8369578 cgcc-c i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97820318 6 + 106955855 cgccac i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123943632 6 + 133663169 cgccac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128191148 6 + 137757926 cgccac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10592232 6 - 16319837 caccac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12214253 6 + 20526591 cgccac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119186714 6 + 128539186 cgccac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 499988 6 + 6255621 cgccac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4562429 6 - 8658521 cgccac i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114766879 4 + 124281992 tgcc-- i calJac3.chr9 C 0 I 328 s cebCap1.NW_016107484v1 2825342 4 + 4466143 CGCC-- i cebCap1.NW_016107484v1 C 0 I 381 s aotNan1.NW_018491581v1 1521051 4 + 5364348 cgcc-- i aotNan1.NW_018491581v1 C 0 I 321 s proCoq1.NW_012154285v1 6683888 3 - 9870158 ggc--- i proCoq1.NW_012154285v1 I 3 C 0 s otoGar3.GL873618 4253589 3 + 7922563 tgc--- i otoGar3.GL873618 I 3 C 0 s mm10.chr5 124777512 3 + 151834684 CAC--- i mm10.chr5 I 1 C 0 s canFam3.chr26 33121418 3 - 38964690 cat--- i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 793771 4 - 1116856 tgcc-- i dasNov3.JH568189 C 0 I 2 e micMur3.chr21 9430173 631 - 31815103 I e saiBol1.JH378194 411121 355 - 9212255 I a score=7111.000000 s hg38.chr12_KI270834v1_alt 21904 1 + 119498 c s panTro5.chr12 127308089 1 + 137163284 c i panTro5.chr12 C 0 C 0 s panPan2.chr12 125659019 1 + 135337776 c i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8171965 1 - 8369578 c i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97820324 1 + 106955855 t i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123943638 1 + 133663169 t i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128191154 1 + 137757926 t i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10592238 1 - 16319837 t i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12214259 1 + 20526591 t i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119186720 1 + 128539186 t i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 499994 1 + 6255621 t i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4562435 1 - 8658521 t i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114767211 1 + 124281992 t i calJac3.chr9 I 328 C 0 s saiBol1.JH378194 411476 1 - 9212255 t i saiBol1.JH378194 I 355 C 0 s proCoq1.NW_012154285v1 6683891 1 - 9870158 t i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4253592 1 + 7922563 t i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124777515 1 + 151834684 T i mm10.chr5 C 0 I 1 s canFam3.chr26 33121421 1 - 38964690 t i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 793777 1 - 1116856 c i dasNov3.JH568189 I 2 C 0 e micMur3.chr21 9430173 631 - 31815103 I e aotNan1.NW_018491581v1 1521055 321 + 5364348 I e cebCap1.NW_016107484v1 2825346 381 + 4466143 I a score=58507.000000 s hg38.chr12_KI270834v1_alt 21905 6 + 119498 gtccag s panTro5.chr12 127308090 6 + 137163284 gtccag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125659020 6 + 135337776 gtccag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8171966 6 - 8369578 gtccag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97820325 6 + 106955855 gtccag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123943639 6 + 133663169 gtccaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128191155 6 + 137757926 gtccaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10592239 6 - 16319837 gtccaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12214260 6 + 20526591 gtccaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119186721 6 + 128539186 gtccaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 499995 6 + 6255621 GTCCAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4562436 6 - 8658521 gtccaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114767212 6 + 124281992 gtctag i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 411477 6 - 9212255 gtctag i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1521376 6 + 5364348 gtctag i aotNan1.NW_018491581v1 I 321 C 0 s proCoq1.NW_012154285v1 6683892 6 - 9870158 gctcag i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4253593 6 + 7922563 gctcag i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124777517 5 + 151834684 TTCCA- i mm10.chr5 I 1 C 0 s canFam3.chr26 33121422 6 - 38964690 gcctag i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 793778 6 - 1116856 acttag i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9430173 631 - 31815103 I e cebCap1.NW_016107484v1 2825346 381 + 4466143 I a score=961769.000000 s hg38.chr12_KI270834v1_alt 21911 80 + 119498 ctttggttcataatcaccatttgggaaagtgg-acccagcattgctagattttcccacatttc----------------------------------------------------------------------------------------------------aagagaagagaagagaaa s panTro5.chr12 127308096 80 + 137163284 ctttggttcataatcaccatttgggaaagtgg-acccagcattgctagattttcccacatttc----------------------------------------------------------------------------------------------------aagagaagagaagagaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125659026 80 + 135337776 ctttggttcataatcaccatttgggaaagtgg-acccagcattgctagattttcccacatttc----------------------------------------------------------------------------------------------------aagagaagagaagagaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8171972 80 - 8369578 ctttggttcctaatcaccatttgggaaagtgg-acccagcattgctagattttcccacatttc----------------------------------------------------------------------------------------------------aagagaagagaagagaaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97820331 80 + 106955855 ctttggttcgtaatcaccatttgggaaagtgg-acccagcattgctagattttccaacatttc----------------------------------------------------------------------------------------------------aagagaagagaagagaaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123943645 80 + 133663169 ctctggttcataatcaccatttgggaaagtgg-acccagcattgctacattttccaacatttc----------------------------------------------------------------------------------------------------aagagaagagaagacaaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128191161 80 + 137757926 ctctggttcataatcaccatttgggaaagtgg-acccagcattgctacattttccaacatttc----------------------------------------------------------------------------------------------------aagagaagagaagacaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10592245 80 - 16319837 ctctggttcataatcaccatttgggaaagtgg-acccagcattgctacattttccaacatttc----------------------------------------------------------------------------------------------------aagagaagagaagacaaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12214266 80 + 20526591 ctctggttcatagtcaccatttgggaaagtgg-acccagcattgctacattttccaacatttc----------------------------------------------------------------------------------------------------aagagaagagaagacaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119186727 85 + 128539186 ctctggttcataatcaccatttgggaaagtgg-acccagcattgctagattttccaacatttc-----------------------------------------------------------------------------------------------aagagaagagaagagaagagaaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 500001 80 + 6255621 CTCTGGTTCATAATCActatttgggaaagtgg-acccagcattgctagattttccaacatttc----------------------------------------------------------------------------------------------------aagagaagagaagacaaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4562442 80 - 8658521 ctctggttcataatcaccatttggcaacgtgg-acccagcattgctagattttccaacatttc----------------------------------------------------------------------------------------------------aagagaagagaagagaaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114767218 80 + 124281992 ctttggttcataatcaccttttgggaaagtgg-acccagtattgctagattttccaacatttc----------------------------------------------------------------------------------------------------aagaaaagagaagagaaa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 411483 80 - 9212255 ctttggttcataatcaccgtttgggaaagtgg-acccaatattgctagattttctgatatttc----------------------------------------------------------------------------------------------------aagaaaagagaagagaaa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2825727 80 + 4466143 ctttggttcataatcaccatttgggaaagtgg-acccagtattgctatattttccgacatttc----------------------------------------------------------------------------------------------------aagaaaagagaagagaaa i cebCap1.NW_016107484v1 I 381 C 0 s aotNan1.NW_018491581v1 1521382 80 + 5364348 ctttggttcataatcaccttttgggaaagtgg-acccagtattgctagattttctgacatttc----------------------------------------------------------------------------------------------------aagaaaagagaaGAGAAA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6683898 79 - 9870158 ctttgattaattattgctacttgggaaagtgg-tcccaccattgctagacttcatagcatttc----------------------------------------------------------------------------------------------------aagagaagccaaaag-tc i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4253599 76 + 7922563 cttccattaattatcactacttgggaaagtgg-acccagcattgctaggtt---caacatttc----------------------------------------------------------------------------------------------------aagagaagctaacgt-tc i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124777522 78 + 151834684 CTTTGGTTCAATAAGGGTACTGGGGGCTGTGGCGCCCTCTGTGGCCAGATTTTGCATCATTTT-------------------------------------------------------------------------------------------------------AGTAGCTGGCCCATC i mm10.chr5 C 0 C 0 s canFam3.chr26 33121428 180 - 38964690 ctgcggttcgctgttactacttgggaaaatga-acccagtgttgcttgatgttccagtatttcTTTTTTTAAAAAAAAGatttatttatttatttatttatttatttatttatttatttatttatttatttatttatttatGATAgacagagagagagagagagagagagagagagagaga i canFam3.chr26 C 0 I 164 s dasNov3.JH568189 793784 79 - 1116856 cctcagtcaattgttgccatttggtgaagtgg-accgagtgttgttacattttccagtttatt----------------------------------------------------------------------------------------------------gagggaagccagaaatc- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9430173 631 - 31815103 I a score=3027391.000000 s hg38.chr12_KI270834v1_alt 21991 228 + 119498 tggagttttacacaaa------aat-ctg-gatttgtaaaaTCC--CAAGTAGGAGCCAGCCCATGAG-GGGCCTTGGAAGTCCTGCCAGAAAAATCCACTAGTCAAGTGGC----TGGTCACCTGCTTCTCTGCC-AATCAGTG-ATCTCATTGTTTGCTTTAATTT--------AGAAAATATATCCATAAATGTGTTGC--TTGCAGTTTTAAAGATGAAAA-TTGCCCTTG----TCCTGACATGTCTTTCTTCCT s panTro5.chr12 127308176 228 + 137163284 tggagttttacacaaa------aat-ctg-gatttgtaaaaTCC--CAAGTAGGAGCCAGCCCATGAG-GGGCCTTGGAAGTCCTGCCAGAAAAATCCACTAGTCAAGTGGC----TGGTCACCTGCTTCTCTGCC-AATCAGTG-ATCTCATTGTTTGCTTTAATTT--------AGAAAATATATCCATAAATGTGTTGC--TTGCAGTTTTAAAGATGAAAA-TTGCCCTTG----TCCTGACATGTCTTTCTTCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125659106 228 + 135337776 tggagttttacacaaa------aat-ctg-gatttgtaaaaTCC--CAAGTAGGAGCCAGCCCATGAG-GGGCCTTGGAAGTCCTGCCAGAAAAATCCACTAGTCAAGTGGC----TGGTCACCTGCTTCTCTGCC-AATCAGTG-ATCTCATTGTTTGCTTTAATTT--------AGAAAATATATCCATAAATGTGTTGC--TTGCAGTTTTAAAGATGAAAA-TTGCCCTTG----TCCTGACATGTCTTTCTTCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8172052 228 - 8369578 tggagttttacacaag------aat-ctg-gatttgtaaaaTCG--CAAGTAGGAGCCAGCCCATGAG-GGGCCTTGGAAGTCCTGCCAGAAAAATCCACTGGTCAAGTGGC----TGGTCACCCGCTTCTCTGAC-AATCAGTG-ATCTCATGGTTTGCTTTAATTT--------AGAAAATATATCCATAAATGTGTTGC--TTGCAGTTTTAAAGATGAAAA-TTGCCCTTG----TCCTGACATGTCTTTCTTCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97820411 228 + 106955855 tggagttttacacaaa------aat-ctg-gatttgtaaaaTTC--CAAGTAGGAGCCAGCCCATGAG-GGGCCTTGGAAGTCCTGCCAGAAAAACCCACCAGTCAGGTGGC----TGGTCACCTGCTTCTCTGCC-AATCAACC-ATCTCATGGTTTGCTTTAATTT--------AGAAAATATATCCATAAATGTGTTGC--TTGCAGTCTTAAAGATGAGAA-TTGCCCTTG----TCCCGACATGTCTTTCTTCCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123943725 228 + 133663169 tggagttttacacaaa------aat-ctg-gatttgtaaaaTCC--CAAGTAGGAGCCAGTCCATGAG-GGGCCTTGGAAGTCCTGCCAGAAAAATCCACTAGTCAGGTGGC----TGGTCGCCTGCTTCTCTGCC-AATCGGTG-ATCTCATGGTTTGCTTTAATTT--------AGAAAATATATCCATAAATGCATTGT--TTGCAGTTTTAAAGATGAAAA-TTGTCCTTG----TCCTGACATGTCTTTCTTCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128191241 228 + 137757926 tggagttttacacaaa------aat-ctg-gatttgtaaaaTCC--CAAGTAGGAGCCAGTCCATGAG-GGGCCTTGGAAGTCCTGCCAGAAAAATCCACTAGTCAGGTGGC----TGGTCGCCTGCTTCTCTGCC-AATCGGCG-ATCTCATGGTTTGCTTTAATTT--------AGAAAATATATCCATAAATGCATTGT--TTGCAGTTTTAAAGATGAAAA-TTGTCCTTG----TCCTGACATGTCTTTCTTCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10592325 228 - 16319837 tggagttttacacaaa------aat-ctg-gatttgtaaaaTCC--CAAGTAGGAGCCAGTCCATGAG-GGGCCTTGGAAGTCCTGTCAGAAAAATCCACTAGTCAGGTGGC----TGGTCACCTGCTTCTCTGCC-AATCGGCG-ATCTCATGGTTTGCTTTAATTT--------AGAAAATATATCCATAAATGCATTGT--TTGCAGTTTTAAAGATGAAAA-TTGTCCTTG----TCCTGACATGTCTTTCTTCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12214346 228 + 20526591 tggagttttacacaaa------aat-ctg-gatttgtaaaaTCC--CAAGTAGGAGCCAGTCCATGAG-GGGCCTTGGAAGTCCTGCCAGAAAAATCCACTAGTCAGGTGGC----TGGTCGCCTGCTTCTCTGCC-AATCGGCG-ATCTCATGGTTTGCTTTAATTT--------AGAAAATATATCCATAAATGCATTGT--TTGCAGTTTTAAAGATGAAAA-TTGTCCTTG----TCCTGACATGTCTTTCTTCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119186812 228 + 128539186 tggagttttacacaaa------aat-ctg-gatttgtaaaaTCC--CAAGTAGGAGCCAGCCCATGAG-GGGCCTTGGAAGTCCTGCCAGAAAAATCCACTAGTCAGGTGGC----TGGTCGCCTGCTTCTCTGCC-AATCGGCG-ATCTCATGGTTTGCTTTAATTT--------AGAAAATATATCCATAAATGCATTGC--TTGCAGTTTTAAAGATGAAAA-TTGTCCTTG----TCCTGATACGTCTTTCTTCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 500081 228 + 6255621 tggagttttacacaaa------aat-ctg-gatttgtaaaaTCC--CAAGTAGGAGCCAGCCCATGAG-GGGCCTTGGAAGTCCTGCCAGAAAAATCCACTAGTCAGGTGGC----TGGTCGCCTGCTTCTCTGCC-AATCGGCG-ATCTCATGGTTTGCTTTAATTT--------AGAAAATATATCCATAAATGCATTGT--TTGCAGTTTTAAAGATGAAAA-TTGTCCTTG----TCCTGACATGTCTTTCTTCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4562522 228 - 8658521 tggagttttacacaaa------aat-ttg-gatttgtaaaGTCC--CAAGTAGGAGCCAGCCCATGAG-GGGTCTTAGAAGTCCTGCCAGAAAAATCCACTAGTCAGGTGGC----TGGTCGCCTGCTTCTTTGCC-AATCGGCG-ATCTCGTGGTTTGCTTTAATTT--------AGAAAATATATCCATAAATGCATTGC--TTGTAGTCTTAAAGATGAAAA-TTGTCCTTG----TCCTGACATGTCTTTCTTCCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114767298 232 + 124281992 aggagttttacacaga------aat-ctg-gatttgtaaaaTCC--CGAGTAGGAGCCAGCCCATGAG-GGGCCTTGGAAGTCCTGCCGGAAAAATCCACTAGTCAGGTGGC----TGGTTGCCTGCTTCTCTGCC-AGTCAACG-ATTTCATCGTTTGC-TTAATTTAGAAAATAAGAAAATATATCCACAAATGTATGGT--CTACAGCTTTAAAGATGAAAA-CTTACCCTG----TCCTGACGTTTC---CTTCCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 411563 227 - 9212255 aggagttttacacaga------aat-ctg-gatttgtaaaaTCC--CGAGTAGAAGCCAGCCCATGAA-GGGCCTCGGAAGTCCTGCCGGAAAAATCCACTAGTCAGGTGGC----TGGTTGCCTGCTTCTCTGCC-AATCAACT-ATCTCATTGTTTCC-TTAATTT--------AGAAAATATATCCATAAATGTATTGC--TTACAGCTTTAAAGATGAAAA-CTGCCCCTG----TCCTGACATTTCGTTCTTCCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2825807 227 + 4466143 aggatttttacacaga------aat-ctg-tatttgtaaaaTCC--CGAGTAGAAGCCAGCCCATGAG-GGGCCTTGGAAGTCCTGCCAGAAAAATCCAGTAGTCAGGTGGC----TGGTTGCCTGCTTCTCTGCC-AATCAACG-ATCTCATTGTTTCC-TTAATTT--------AGAAACTATATCCATAAATGTATTGC--TTACAGCTTTAAAGATGAAAA-CTGCCCCTG----TCCTGACATTTTGTTCCTCCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1521462 228 + 5364348 AGGAGTTTTCCACAGA------AAT-CTG-GATTTGTGAAATCC--TGAGTAGAAGCCAGCCCATGAG-AGGCCTTGGAAGTCCTGCCGGAAAAATCCACTAGTCAGGTGGC----TGGTTGCCTGCTTCTCTGCC-GATCAACA-ATCTCGTTGTTTGCTTTAATTT--------AGAAAATATATCCATAAATGTGTTGC--TTACAGCTTTAAAGATGAAAA-CTGCCCCTG----TCCTGACATTTCGTTCTTCCT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6683977 228 - 9870158 tggcattttacacaaa------aat-ctt-gatttgtaaaatcc--ctagtgggagctggcccatgagaggggcttggAAGTCTTGCCAGAAGGATCCGTTTGTGGGG-GGC----TGGCTGGCTGCTTCTTTGTC-AACCGACA-ATCTCGTTGTTTGCTTTGATTT--------AGAAAGTGTATCCACAAATGTGTTGC--TTGCAGTTTTAAAGACGAAAA-TCGCCCTTG----CCCTGACATCTCTTTCACTCC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4253675 199 + 7922563 tggtgttttacacaaa------aat-ctt-gatttgtaaaatct--tgagtgggag-------------------------------cagaaagatccattagtggggtggc----cagctggctgcTTCCCTGGCTAACTGACA-GTCTCTTTATTTGCTTTAATGT--------AGAAAGTGTATCTACAGATGTGCTAC--TTGCAGTTTTAAAGATGACAA-TCACCCTTG----TTCTGACATTTCTTTCACTTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124777600 214 + 151834684 TGGAGTTTTCTACAAATAATGCAGT-CTG-GA-TTACCTAGCCC--TAAGTGGGAGTTGGCCTACTGA-GGGCCTTGGGAATATTTCTAGAAAGTTCTGTGAGTGTTG-GAC----TAGGC-CAGGGCTCCCAGCC-CTTCAGCA-----CAGTGT-----TTAATTT--------AGAAGA-------GCAAACCCCCCGCCACTTCTGTTTCTGGGA--GAAA-CAGACCCTGAGCATCCTG-----TCGGAATCCCT i mm10.chr5 C 0 C 0 s canFam3.chr26 33121772 229 - 38964690 tggagtttttcataaa------att-ccgtaatttgtaaagtcctgtgAATGGGAACTGGCCCAGGA--GGGTCCTGGAAGTCTTGCCAGAAAGATCCACCAGTGGGGTGAT----TGGCTGGCTGCCTCTCTGGC-AACCGG-A-TCCACACTCTCTGTTTTAACTT--------AGGGAACATATCTGTAAATATGTCAC--TTGTGATTTTAAAGTTAAAAA-TTGCCCTTG----TCCTGACATTTCTTTCACTCT i canFam3.chr26 I 164 C 0 s dasNov3.JH568189 793863 226 - 1116856 tggagttttacatgaa------aatcctt-gatttG----------TTAGTGGGAGATAGCCCAGGAA-AGGCCTTGCAAGTCTTGCCAGAAAGACCTGTCAGCAGGGTGGCTGCTTGGCTGACTGGTTTTCTGCC-AATCTGAATATCCCATT-CTTACTTTAATCT--------AGGAAATGTATTCATAGATGTCTCAC--TTGCAGTTTTGAAGAAGAAAATTTGCCCTTG----TCCTGACATTTTTTTCATTAC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9430173 631 - 31815103 I a score=3159822.000000 s hg38.chr12_KI270834v1_alt 22219 160 + 119498 AGGCCGTGGGGAAGATTTTCTCTGGCCTGGCACAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGATGCTTCTGTGCTCTCCGTGATCTCCTCCCAGATCCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACGTTCCAGGTGAG s panTro5.chr12 127308404 160 + 137163284 AGGCCGTGGGGAAGATTTTCTCTGGCCTGGCACAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGATGCTTCTGTGCTCTCCGTGATCTCCTCCCAGATCCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACGTTCCAGGTGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125659334 160 + 135337776 AGGCCGTGGGGAAGATTTTCTCTGGCCTGGCACAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGATGCTTCTGTGCTCTCCGTGATCTCCTCCCAGATCCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACGTTCCAGGTGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8172280 160 - 8369578 AGGCCGTGGGGAAGATTTTCTCTGGCCTGGCACAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGATGCTTCTGTGCTCTCCGTGATCTCCTCCCAGATCCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACGTTCCAGGTGAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97820639 160 + 106955855 AGGCCGTGGGGAAGATTTTCTCTGGCCTAGCACAGTGCGGGTCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGATGCTTCTGTGCTCTCCGTGATCTCCTCTCAGATCCAGACAATCCGAAATGCTCTGATCCATCAGTTAACCACGTTCCAGGTGAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123943953 160 + 133663169 AGGCCGTGGGGAAGATTTTCTCTGGCCTGGCCCAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGATGCTTCTGTGCTCTCCGTGATCTCCTCTCAGATCCAGACGATCCGAAACGCTCTGATCCATCAGTTAACCACATTCCAGGTGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128191469 160 + 137757926 AGGCCGTGGGGAAGATTTTCTCTGGCCTGGCCCAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATTGATGCTTCTGTGCTCTCCGTGATCTCCTCTCAGATCCAGACGATCCGAAACGCTCTGATCCATCAGTTAACCACATTCCAGGTGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10592553 160 - 16319837 AGGCCGTGGGGAAGATTTTCTCTGGCCTGGCCCAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATTGATGCTTCTGTGCTCTCCGTGATCTCCTCTCAGATCCAGACGATCCGAAACGCTCTGATCCATCAGTTAACCACATTCCAGGTGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12214574 160 + 20526591 AGGCCGTGGGGAAGATTTTCTCTGGCCTGGCCCAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGATGCTTCTGTGCTCTCCGTGATCTCCTCTCAGATTCAGACGATCCGAAACGCTCTGATCCATCAGTTAACCACATTCCAGGTGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119187040 160 + 128539186 AGGCCGTGGGAAAGATTTTCTCTGGCCTGGCCCAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGACGCTTCTGTGCTCTCCGTGATCTCCTCTCAGATCCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACGTTCCAGGTGAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 500309 160 + 6255621 AGGCCGTGGGGAAGATTTTCTCTGGCCTGGCCCAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGACGCTTCTGTGCTCTCCGTGATCTCCTCTCAGATCCAGACAATCCGAAACGCTCTGATCCATCAGTTAACCACGTTCCAGGTGAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4562750 160 - 8658521 AGGCCGTGGGGAAGATTTTCTCTGGCCTGGCCCAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGACGCTTCTGTGCTCTCCGTGATCTCCTCTCAGATCCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACGTTCCAGGTGAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114767530 160 + 124281992 AGGCCGTGGGGAAGATTTTCTCTGGCCTGGCACAGTGCGGGGCCTGGGGCTGCTTTGATGAGTTTAATCGAATCGATGCTTCTGTGCTGTCCGTGATCTCCTCTCAGATCCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACATTCCAGGTGAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 411790 160 - 9212255 AGGCCGTGGGGAAGATTTTCTCTGGCCTGGCACAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGATGCGTCTGTGCTGTCCGTGATCTCCTCTCAGATCCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACGTTCCAGGTGAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2826034 160 + 4466143 AGGCTGTGGGGAAGATTTTCTCTGGCCTGGCACAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATTGATGCTTCTGTGCTGTCCGTGATCTCCTCCCAGATCCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACATTCCAGGTGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1521690 160 + 5364348 AGGCCGTGGGGAAGATATTCTCTGGCCTGGCACAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATTGATGCTTCTGTGCTGTCCGTGATCTCCTCTCAGATCCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACGTTCCAGGTGAG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9430804 160 - 31815103 AGGCCGTGGGGAAGATCTTCTCCGGCCTCGCGCAGTGCGGGGCTTGGGGCTGCTTTGACGAGTTCAACCGGATCGACGCCTCCGTGCTCTCGGTCATCTCGTCTCAGATCCAGACGATCCGGAACGCTCTGATGCATCAGTTAACCACGTTCCAGGTGAG i micMur3.chr21 I 631 I 451 s proCoq1.NW_012154285v1 6684205 160 - 9870158 AGGCCGTGGGGAAGATTTTCTCTGGCCTTGCGCAGTGCGGGGCTTGGGGCTGCTTTGACGAGTTTAATCGCATCGACGCCTCTGTGCTCTCAGTTATCTCGTCTCAGATCCAGACCATCCGAAACGCTCTGATCCATCAGTTAACCACGTTCCAGGTGAG i proCoq1.NW_012154285v1 C 0 I 461 s otoGar3.GL873618 4253874 160 + 7922563 AGGCTGTGGGGAAGATTTTCTCTGGCCTTGCCCAGTGTGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGCATTGACGCCTCTGTGCTCTCAGTTATCTCATCTCAGATTCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACATTCCAGGTGAG i otoGar3.GL873618 C 0 I 3 s mm10.chr5 124777814 160 + 151834684 AGGCTGTCGGGAAGATCTTCTCTGGCCTTGCCCAGTGTGGCGCGTGGGGCTGCTTCGATGAGTTCAACCGGATCGATGCCTCCGTGCTGTCTGTCATCTCGTCTCAGATCCAGACAATCCGCAATGCGCTGATCCATCAGCTGACCACGTTCCAGGTGAG i mm10.chr5 C 0 I 1082 s canFam3.chr26 33122001 160 - 38964690 AGGCCATTGGGAAGATTTTCTCTGGCCTTGCCCAGTGTGGGGCTTGGGGCTGCTTTGATGAGTTCAATCGAATCGATGCCTCTGTGCTATCTGTCATCTCATCTCAGATTCAGACGATCCGAAATGCTCTGATTCATCAGCTAACCACGTTCCGGGTGAG i canFam3.chr26 C 0 I 3 s dasNov3.JH568189 794089 160 - 1116856 AGGCTATTGGGAAGATTTTTTCTGGCCTTGCCCAGTGTGGGGCCTGGGGCTGCTTTGATGAGTTTAATCGAATCGATGCCTCTGTGCTCTCAGTTATCTCATCTCAGATCCAGACAATTCGAAATGCTCTGATCCACCAGTTAACCAAGTTCCAGGTGAG i dasNov3.JH568189 C 0 I 3 a score=1709749.000000 s hg38.chr12_KI270834v1_alt 22379 183 + 119498 ACACATGAAGCCC-CCGGGACCATG-TCCCTAGGATGGAAGT-TTGCCAAGTATGGTAAGCTTCCTCTGTAGCGTCAGTTTCTGGGCCGTTGACACTCCAGACCAGGCTTCCTGTAG---AAGATCTGTTGG------TTTTTCCAATTGAGATGATTGGGTTT-CC----A-AAATTATCATCATTGATGAT----AAGGTTTG s panTro5.chr12 127308564 183 + 137163284 ACACATGAAGCCC-CCGGGACCATG-TCCCTAGGATGGAAGC-TTGCCAAGTATGGTAAGCTTCCTCTGAAGCGTCAGTTGCTGGGCCGTTGACACTCCAGACCAGGCTTCCTGTAG---AAGATCTGTTGG------TTTTTCCAATTGAGATGATTGGGTTT-CC----A-AAATTATCATCATTGATGAT----AAGGTTTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125659494 183 + 135337776 ACACATGAAGCCC-CCGGGACCATG-TCCCTAGGATGGAAGC-TTGCCAAGTATGGTAAGCTTCCTCTGAAGCGTCAGTTGCTGGGCCGTTGACACTCCAGACCAGGCTTCCTGTAG---AAGATCTGTTGG------TTTTTCCAATTGAGATGATTGGGTTT-CC----A-AAATTATCATCATTGATGAT----AAGGTTTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8172440 183 - 8369578 ACACATGAAGCCC-CCGGGACCATG-TCCCTAGGATGGAAGC-TTGCCAAGTATGGTAAGCTTCCTCTGAAGCATCAGTTGCTGGGCCGTTGACACTCCAGACCAGGCTTCCTGTAG---AAGATCTGTTGG------CTTTTCCAATTGAGATGATTGGGTTT-CC----A-AAATTATCATCATTGATGAT----AAGGTTTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97820799 143 + 106955855 ACATGTGAAATCC-CCGGGACCATG-ACCCCAGGATGGAAGC-TTGCC---------ATACTACCTCTGAAA-------------------------------CAGGCTTCCTATGG---AAGATCTGTTGG------TTTTTCCAACTGAAATGATTGGGTTT-CC----C-AAATTATCATCATTGATGAT----AAGGTTTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123944113 176 + 133663169 ACGTGCGAAGCCC-CCGGGACCATG-TCCCCAGGATGGAAGC-TTGCC---------ATACTACCTCTGAAACACCAGATGGTGGGCCGTTGTCACTCTAGACCAGGCTTCCTGTAG---AAGATCTGTTGG------CTTTTCCAATTGAGATGATTGGGTTT-CC----A-AAATTATCATCATTGATGATAG--AAGGTTTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128191629 176 + 137757926 ACGTGCGAAGCCC-CCGGGACCATG-TCCCCAGGATGGAAGC-TTGCC---------ATACTACCTCTGAAACACCAGATGGTGGGCCGTTGTCACTCTAGACCAGGCTTCCTGTAG---AAGATCTGTTGG------CTTTTCCAATTGAGATGATTGGGTTT-CC----A-AAATTATCATCATTGATGATAG--AAGGTTTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10592713 176 - 16319837 ACGTGCGAAGCCC-CCGGGACCATG-TCCCCAGGATGGAAGC-TTGCC---------ATACTACCTCTGAAACACCAGATGGTGGGCCGTTGTCACTCTAGACCAGGCTTCCTGTAG---AAGATCTGTTGG------CTTTTCCAATTGAGATGATTGGGTTT-CC----A-AAATTATCATCATTGATGATAG--AAGGTTTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12214734 176 + 20526591 ACGTGCGAAGCCC-CCGGGACCATG-TCCCCAGGATGGAAGC-TTGCC---------ATACTACCTCTGAAACACCAGATGGTGGGCCGTTGTCACTCTAGACCAGGCTTCCTGTAG---AAGATCTGTTGG------CTTTTCCATTTGAGATGATTGGGTTT-CC----A-AAATTATCATCATTGATGATAG--AAGGTTTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119187200 176 + 128539186 ATGCGTGAAGCCC-CCGGGACCATG-TCCCCAGGATGGAAGC-TTGCC---------ATACTACCTCTGAAACATCAGATGGTGGGCCGTTGTCACTCTAGACCAGTCTTCCTGTAG---AAGATCTGTTGG------CTTTTCCAGTTGAGATGATTGAGTTT-CC----A-AAATTATCATCGTTGATGATAG--AAGGTTTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 500469 176 + 6255621 ACGCGCGAAGCCC-CCGGGACCATG-TCCCCAGGATGGAAGC-TTGCC---------ATACTACCTCTGAAACACCAGATGGTGGGCCGTTGTCACTCTAGACCAGGCTTCCTGTAG---AAGATCTGTTGG------CTTTTCCAATTGAGATGATTGGGTTT-CC----A-AAATTATCATTGTTGATGATAG--AAGGTTTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4562910 176 - 8658521 ACGCATGAAGCCC-CCGGGACCATG-TCCCCAGGATGGAAGC-TTGCC---------ATACTACCTCTGAAACACCAGATGGTGGGCCGTTGTCACTCTATACCAGGCTTCCTGTAG---AAGATCTGTTGG------CTTTTCCAATTGAGATGATTGGGTTT-CC----A-AAATTATCATCGTTGATGATAG--AAGGTTTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114767690 181 + 124281992 ACACGTGCCGCCCACCGGGACCGTG-TTCCCAGGAGGGAAGC-TTGCC---------ATCCTACCTCTGAAACATCAGATGGTGGGCAGCTGTTGCTCCAGATCAGGCTTCCTCTAG---AAGATCCGTTGGCGTTTTCTTTTCCAGTTGAGATGCTTGGGTTT-CC----A-AAATTACCATCATTGATGAT----AAAGTCTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 411950 174 - 9212255 ACACGTG-------CCGGGACCGTG-TCCCCAGGAGGGAAGC-TTGCC---------ATACTAGCTCTGAAACAGCAGATGGTGGGCAGCTGTCGCTCCAGATCAGGCTTCCTCTAG---AAGATCTGTTGGCTTTTTCTTTTCCAGTTGAGATGATTGGGTTT-CC----A-AAATTACCGTCATTGATGAG----AAGGTTTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2826194 181 + 4466143 ACACGTGCCGCCCACCGGGACCGTG-TCCCCAGGAGGGAAGC-TTGCC---------ATACTACCTCTGAAACATCAGATGGTGGGCAGCTGTCGCTCCAGATCAGGCTTCCTCTAG---AAGATCTGTTGGCTTTTTCTTTTCCAGTTGAGATGATTGGGTTT-CC----A-AAATTACCATCATTGATGAT----AAGGTTTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1521850 181 + 5364348 ACACGTGCCGCCCACCGGGACCGTG-TCCCCGGGAGGGAAGC-TTGCC---------ATACTACCTCTGAAACATCAGATGGTGGGCAGCCGTCGCTCCAGATCAGGCTTCCTCTAG---AAGATCTGTTGGCTTTTTCTTTTCCAGTTGAGATGATTGGGTTT-CC----A-AAATTACCATCATTGATTAT----AAGGTTTG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4254037 177 + 7922563 AAGTGTGAAGCCCTCTAGCGTGGTA-TCCTCAGGATGAAAAC-TGGCC---------CCCTTACCTTTGAAACAGCAGGTGGTGTGGAGTTGTCTTTCCAGAC------TCCTGAAG---AAGACTTGCCAAATTTTTATTTTCTCATTGAGTTGGTTGGGATT-CC----ACAAATTATCATCATTGGTGATTA--AAGATTT- i otoGar3.GL873618 I 3 C 0 s canFam3.chr26 33122164 152 - 38964690 GAGTGTGAAGCTGGGCCTGATCACACTCTTCAGGGTGGAAACTTTGCT---------GTGTTCCTTTTGAAACATCAGAT------------------------------------G---AAGGCTTGACAGATTTTTGCTTTTGAATTGAGGTAGTTGGGTTTCCC----A-AAATTATCAGCATCTTTGAGAATTAGAGACTG i canFam3.chr26 I 3 C 0 s dasNov3.JH568189 794252 187 - 1116856 AAGTGTGATGCTCCGTTGGGCCCTG-TCCCCAAGATGCAAAC--TGCC---------CTGTTACCTTCGAGACGACAGGTGGCAGAGGCTTGTCTTTCCAGA-CAGCTTTTCTATGGATAAAGACTGGCCAGATTTTTGTTTTTAAACTGAGATGATAAGGATT-CCCTGAA-TTATTATTATCTTTGATAAT-G--AAGGACTG i dasNov3.JH568189 I 3 C 0 e micMur3.chr21 9430964 451 - 31815103 I e mm10.chr5 124777974 1082 + 151834684 I e proCoq1.NW_012154285v1 6684365 461 - 9870158 I a score=553154.000000 s hg38.chr12_KI270834v1_alt 22562 34 + 119498 TAATAGTCCAAGGACTTCACACTGACTCCAGACA s panTro5.chr12 127308747 34 + 137163284 TAATAGTCCAAGGACTTCACACTGACTCCAGACA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125659677 34 + 135337776 TAATAGTCCAAGGACTTCACACTGACTCCAGACA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8172623 34 - 8369578 TAATAGTCCAAGGACTTCACACTGACTCCAGACA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97820942 34 + 106955855 TAATAGTCCAAGGACTTCACACTGACTCCAGAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123944289 34 + 133663169 TAACAGTCCAAGGACTTCACACTGACTCCAGACA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128191805 34 + 137757926 TAACAGTCCAAGGACTTCACACTGACTCCAGACA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10592889 34 - 16319837 TAACAGTCCAAGGACTTCACACTGACTCCAGACA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12214910 34 + 20526591 TAACAGTCCAAGGACTTCACACTGACTCCAGACA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119187376 34 + 128539186 TAACAGTCCAAGGACGTCACACTGACTCCAGACA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 500645 34 + 6255621 TAACAGTCCAAGGACTTCACACTGACTCCAGACA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4563086 34 - 8658521 TAACAGTCCAAGGACTTCACACTGACTCTAGACA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114767871 34 + 124281992 TAGTAGTCCAAGGACTTCGCACTGACTCCAGACA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 412124 34 - 9212255 TAATAGTCCAAGGACTTCACACTGACTCCAGACA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2826375 34 + 4466143 TAATAGTCCAAGGACTTCACACTGACTCCAGACA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1522031 34 + 5364348 TAATAGTCCGAGGACTTCACACTGACTCCAGACA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9431415 34 - 31815103 TAATAGTCCAAGGACTTCAAACTAATTCCAGACA i micMur3.chr21 I 451 C 0 s proCoq1.NW_012154285v1 6684826 34 - 9870158 TAATAGTCCAAGGACTTCAAACTAATTCCAGACA i proCoq1.NW_012154285v1 I 461 I 31 s otoGar3.GL873618 4254214 34 + 7922563 TAATAGTTCAAGGACTTCAAACTAATTCCAAATA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33122316 33 - 38964690 CAGTA-TTCTAGAACTTCAAACTAATTCCAGACA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 794439 34 - 1116856 TAATATTCCAAGGACCTCAAACTACTTCAGGGTA i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124777974 1082 + 151834684 I a score=298767.000000 s hg38.chr12_KI270834v1_alt 22596 34 + 119498 CAGAACCAATAGT---TATGAATGGGCGTGGGGCAGA s panTro5.chr12 127308781 33 + 137163284 CAGAACCAATAGT---TATG-ATGGGGGTGGAGCAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125659711 33 + 135337776 CAGAACCAATAGT---TATG-ATGGGGGTGGAGCAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8172657 33 - 8369578 CAGAACCAATAGT---TATG-ATGGGGGTGGAGCAGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97820976 34 + 106955855 TGGAATCAATAGT---TATGAATGGGGGTGTGGCAGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123944323 34 + 133663169 TAGAACTAATAGT---TACGAATGGGGGTGGGGCAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128191839 34 + 137757926 TAGAACTAATAGT---TACGAATGGGGGTGGGGCAGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10592923 34 - 16319837 TAGAACTAATAGT---TACGAATGGGGGTGGGGCAGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12214944 34 + 20526591 TAGAACTAATAGT---TACGAATGGGGGTGGGGCAGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119187410 34 + 128539186 TAGAACTAATAGT---TACAAATGGGGGTGGGGCAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 500679 34 + 6255621 TAGAACTAATAGT---TACGAATGGGGGTGGGGCAGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4563120 34 - 8658521 TAGAACTAACAGT---TACGAATGGGGGTGGGGCAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114767905 33 + 124281992 TATCGCTAACAGT---TACAGAT-GGGGTGGGGCAGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 412158 33 - 9212255 TATC-CTAACAGT---TACGGGTGGGGGTGGGGCAGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2826409 34 + 4466143 TATCACTAACAGT---TACAGATGGGGGTGGGGCAGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1522065 34 + 5364348 TATCACTAACAGT---TATAGATGGGAGTGGGGCAGC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9431449 32 - 31815103 TATAACTAATAGT---TATAGACAG--GTAAGACGGT i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4254248 28 + 7922563 TATAATGAATACT---TATAAACAG------GACAGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33122349 35 - 38964690 TAGAAGTAGTAGTAGCTATAGACAA--GTAAGGcagt i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 794473 32 - 1116856 TATGATTATTAAT---TACAGACAG--GCAAGGCAGT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124777974 1082 + 151834684 I e proCoq1.NW_012154285v1 6684860 31 - 9870158 I a score=2331936.000000 s hg38.chr12_KI270834v1_alt 22630 160 + 119498 GTTCTCAAATAAGTGATGTGCAGGGTCCCCTAGAAAGGAAACAAT---AT--TCTTGGCGACTTCCCAAGTTTGAG--------AAAACCTGACTTAGAAA----------------------------------------------------------------------------------GCGAATGTTCCTTGCAAT---CATTATC---------ACAGT-------GAACAAGAAATTTTGCCTTCATACCTTGTGAAGTTACGGCAT s panTro5.chr12 127308814 162 + 137163284 GTTCTCAAATAAGTGATGTGAAGGGTCCCCTAGAAAGGAAACAAT---AT--TCTTGGTGACTTCCCAAGTTTGAG--------AAAACCTGACTTAGAAA----------------------------------------------------------------------------------GCGAATGTTCCTTGCAATC-ACATTATC---------ACAGT-------GAACAAGAAATTTTGCCTTCATAGCTTGTGAAGTTACGGCAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125659744 162 + 135337776 GTTCTCAAATAAGTGATGTGCAGGGTCCCCTAGAAAGGAAACAAT---AT--TCTTGGTGACTTCCCAAGTTTGAG--------AAAACCTGACTTAGAAA----------------------------------------------------------------------------------GCGAATGTTCCTTGCAATC-ACATTATC---------ACAGT-------GAACAAGAAATTTTGCCTTCATAGCTTGTGAAGTTACGGCAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8172690 162 - 8369578 GTTCTCAAATAAGTGATGTGCAGGGTCCTCTAGAAAGGAAACAAT---AT--TCTTGGCGACTTCCCAAGTTTGAG--------AAAACCTGACTTAGAAA----------------------------------------------------------------------------------GCGAATGTTCCTTGCAATC-ACATTATC---------ACAGT-------GAACAAGAAATTTTGCCTTCATAGCTTGTGAAGTTACGGCAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97821010 162 + 106955855 GTTCTCAAATAAGTGATGTGCAGGGCCCTCTAGAAGGGAAAAAAG---AT--TCTTGGCGACTTCCCAAGTTTGAG--------AAAGCCTGACTTAGAAA----------------------------------------------------------------------------------GCGAATGTTCCATGCAATC-ACATTATC---------ACAGT-------GAATAAGAAATTTTGCCTTCATAGCTTGTAAAGTTACGGCAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123944357 162 + 133663169 TTTCTCAAATAAGTGATGTGCAGGGCCCCCTAGAAGGGAAAAAAT---AT--TCTTGGTGACTTCCCAAGTTTGAG--------AAAACCTGACTTAGAAA----------------------------------------------------------------------------------GTGAATGTTCCATGCAATC-ACATTGTC---------ACAGT-------GAATAAGAAATTTTTTCTTCATAGCTTGTAAAGTTATGGCGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128191873 162 + 137757926 TTTCTCAAATAAGTGATGTGCAGGGCCCCCTAGAAGGGAAAAAAT---AT--TCTTGGTGACTTCCCAAGTTTGAG--------AAAACCTGACTTAGAAA----------------------------------------------------------------------------------GTGAATGTTCCATGCAATC-ACATTGTC---------ACAGT-------GAATAAGAAATTTTTTCTTCATAGCTTGTAAAGTTATGGCGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10592957 162 - 16319837 TTTCTCAAATAAGTGATGTGCAGGGCCCCCTAGAAGGGAAAAAAT---AT--TCTTGGTGACTTCCCAAGTTTGAG--------AAAACCTGACTTAGAAA----------------------------------------------------------------------------------GTGAATGTTCCATGCAATC-ACATTGTC---------ACAGT-------GAATAAGAAATTTTTTCTTCATAGCTTGTAAAGTTATGGCGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12214978 162 + 20526591 TTTCTCAAATAAGTGATGTGCAGGGCCCCCTAGAAGGGAAAAAAT---AT--TCTTGGCGACTTCCCAAGTTTGAG--------AAAACCTGACTTAGAAA----------------------------------------------------------------------------------GTGAATGTTCCATGCAATC-ACATTGTC---------ACAGT-------GAATAAGAAATTTTGTCTTCATAGCTTGTAAAGTTATGGCGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119187444 162 + 128539186 GTTCTCAAATAAGTGATGTGCAGGGCCCCCTAGAAGGGAAAAAAT---AT--TCTTGGTGACTTCCCAAGTTTGAG--------AAAACCTGACTTAGAAA----------------------------------------------------------------------------------GTGAATGTTCCATGCAATC-ACATTGTC---------ACAGT-------GAATACGAAATTTTGTCTTCATAGCTTGTAAAGTTACGGCGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 500713 162 + 6255621 GTTCTCAAATAAGTGATGTGCAGGGCCCCCTAGAAGGGAAAAAAT---AT--TCTTGGCGACTTCCCAAGTTTGAG--------AAAACCTGACTTAGAAA----------------------------------------------------------------------------------GCGAATGTTCCATGCAATC-ACATTGTC---------ACAGT-------GAATACGAAATTTTGTCTTCATAGTTTGTAAAGTTACGGCGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4563154 162 - 8658521 GTTCTCAAATAAGTGATGTGCAGGGCCCCCTAGAAAGGAAAAAAT---AT--TCTTGGCGACTTCCCAAGTTTGAG--------AAAACCTGACTTAGAAA----------------------------------------------------------------------------------GCGAATGTTCCATGCAATC-ACATTGTC---------ACAGT-------GAATAAGAAATTTTGTCTTCGTAGCTTGTAAGGTTACGGCAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114767938 162 + 124281992 ATTCCCAAATAAGTGGTGTGCAGGGCCCCTTAGAAAGGAAAAAGT---AT--TCTTGGCCACTTCCCAAGTTTGAG--------AAAACCTGACTTATAAA----------------------------------------------------------------------------------GTGCATGTTCCATGCAATC-ACAATGGC---------ACAGT-------GAACAAGACGTTTTGCCTTCGTAGCTTGTAAAGTTACAGTAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 412191 162 - 9212255 ATTCTCAAATAAGTCGTGTGCAGGGCCCTCTAGAAAGGAAAAAAT---AT--TCTTGGTGACTTCCCAAGTTTGAG--------AAAACCTGACTTACAAA----------------------------------------------------------------------------------GCGTATGTTCCATGTAATC-ACAATATC---------ACAGT-------GAACAAGAAATTTTGCCTTCATAGCTTGTAAAGTTACGACAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2826443 162 + 4466143 ATTCTCAAATAAGTGGTGTGCAGGGCCTCCTAGAAAGGAAAAAAT---AT--TCTTGGCGACTTCCCAAGTTTGAG--------AAAACCTGACTTACAAA----------------------------------------------------------------------------------GCACACATTCCATGCAATC-ACAATATC---------ACAGT-------GAAGAAGAAATTTTGCCTTCATAGCTTGTAAAGTTACGGCAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1522099 162 + 5364348 ATTCCCAAATAAGTGATGTGCAGGGCCCCTTAGAAAGGAACGAAT---AT--TCTTGGCGACTTCCCAAGTTTGAG--------AAAACCTGACTTACAAA----------------------------------------------------------------------------------GTGCATGTTCCATGCAATC-ACAATATC---------ACAGC-------GAACAAGAAATTTTGCCTTCATAGCTTGTGAAGTTACGGCAT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9431481 164 - 31815103 GTTCTCAAATAAGTGATGTGCAGGACCCCCTATAACGGAAAAAAA---ATATTCTTGGTGACTTCCCAAGTTTGAA--------AAGACCTGACTTAAAAA----------------------------------------------------------------------------------GTTAATGTTCTATTTAGTC-ACATTATC---------ACAAT-------GAACAAGAAATTTTGACTTCATACCTTATAAAGTTATGGCAT i micMur3.chr21 C 0 I 419 s proCoq1.NW_012154285v1 6684891 164 - 9870158 GTTCTCAAATAAGTCATGTGCAGGGACCCCTATAAAGGGAAAAAA---ACATTCTTGGTGACTTCCCAGGTCTGAG--------AAGACCTGACTTAGAAA----------------------------------------------------------------------------------GTTAATGTTCCGTTCAATC-ACGTTATC---------ACAGT-------GAACAAGAAATTCTGCCTTCATACCTTATAAAGTTATGGCAT i proCoq1.NW_012154285v1 I 31 I 731 s otoGar3.GL873618 4254276 244 + 7922563 GTCCTCAAAAAAGTGATATGCAGGGCCCCCTATAAAGGAGAAAGA---AA--TCTTGATGACTTCTCAAGTTTGAG--------AAGACCTGACTTAGAAAGTTAATGCTctgtgagctatgatgccataacactctacccacagtgacagagtaagagtctgtatcaaaaaaaagaaaaaCTGTTAATGCTCTGTTCAATG-ACATTTAC---------ATAGT-------GAACAAGAAATTTTGCCTTCATATTTTATAAAGTTATGGCAC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33122384 188 - 38964690 gttctcaagtaagtaatgtccagagccccctttaaagaaaaaaaCAAAAT--TCTTGGTCACTTCCCAAGTTTGAGGGGGAAAAAAAAAGCAACCTTAAAG----------------------------------------------------------------------------------ATGAATGTTCCATTCAATT-GAAATGTCTTTCAATAGATAGTATTACACAGACAGAAAATTTTGCCTTC-TGCCTCGTGAAGTTAGGGCAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 794505 145 - 1116856 GTTCTCAAATAAATGATGTTCAGGGCCCCCTTTAAAGGAAAAAGA---AG-----------CTTCCCAAGTTTGAG--------AAATACTGATTTAGGGC-------------------------------------------------------------------------------------------CCTTTCAATCGAAATTATC---------ACAAT-------GAACAAGAAGTTTTGTCTTCATATTCGGTAAAGTTATGGCAT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124777974 1082 + 151834684 I a score=737410.000000 s hg38.chr12_KI270834v1_alt 22790 67 + 119498 CATAACAAGCAGGATTTGCAAG---GTT---ATCAAAGTGAGAAGGCAGA-ATTTTAAAACAATTGTTGAGAAT s panTro5.chr12 127308976 67 + 137163284 CATAACAAGCAGGATTTGCAAG---GTT---ATCAAAGTGAGAAGGCAGA-ATTTTAAAACAATTGTTGAGAAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125659906 67 + 135337776 CATAACAAGCAGGATTTGCAAG---GTT---ATCAAAGTGAGAAGGCAGA-ATTTTAAAACAATTGTTGAGAAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8172852 67 - 8369578 CATAACAAGCAGGATTTGCAAG---GTT---ATCAAAGTGAGAAGGCAGA-ATTTTAAAACAATTGTTGAGAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97821172 67 + 106955855 TATAACAAGCAGGATTTGCAAG---GTT---ATCAAAGTGAGAAGGCAAA-ATTTTAAAACAATTGTCGAGAAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123944519 67 + 133663169 CATAATAAGCAGGATTTGCAAG---GTT---ATCAAAGTGAGATGGCAAA-ATTTTAAAACAATTGTTGAGAAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128192035 67 + 137757926 CATAATAAGCAGGATTTGCAAG---GTT---ATCAAAGTGAGATGGCAAA-ATTTTAAAACAATTGTTGAGAAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10593119 67 - 16319837 CATAATAAGCAGGATTTGCAAG---GTT---ATCAAAGTGAGATGGCAAA-ATTTTAAAACAATTGTTGAGAAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12215140 67 + 20526591 CATAATAAGCAGGATTTGCAAG---GTT---ATCAAAGTGAGATGGCAAA-ATTTTAAAACAATTGTTGAGAAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119187606 67 + 128539186 CATGATAAGCAGGATTTGCAAG---GTT---ATCAAAGTGAGAAGGCAAA-ATTTTGAAACAATTGTTGAGAAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 500875 67 + 6255621 CATAATAAGCAGGATTTGCAAG---GTT---ATCAAAGTGAGAAGGCAAA-ATTTTGAAACAACTGTTGAGAAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4563316 67 - 8658521 CATAACAAGCAGGATTTGCAAG---GTT---ATCAAAGTGAGAAGGCAAA-ATTTTAAAACAATTGTTGAGAAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114768100 66 + 124281992 CATAACAAGCAGGATTTGTAAG---ATT---ATCAAAGTGAG-AGGCCAC-GTTTTAAAACAGTTGTTGAGAAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 412353 67 - 9212255 TGTAACAAGCAGGATTTGCAAG---ATG---ATCAAAGTGAGAAGGCCAC-ATTTTTAAACAGTTGTTGAGAAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2826605 67 + 4466143 TGTAACAAGCAGGATTTGCAAG---ATT---ATCAAAGTGAGAAGGCCAC-ATTTTAAAACAGTTGTTGAGAAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1522261 67 + 5364348 CATAACAAGCAGGATTTGCAAG---ATC---ATCAAAGTGAGAAGGCCAC-GTTTTAAAACAGTTGTTGAGAAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4254520 61 + 7922563 -------TATTGGATTTTTAAAGTTGTT---ATCAAAGTGAGAAGGGAAA---TTAAAAATAAATTTTGGGGGT i otoGar3.GL873618 C 0 I 471 s canFam3.chr26 33122572 68 - 38964690 TAAAACGAGCTGGAtttttaag---gttgtcatcaaaatgaaaaggc-aa-attagaaaaaaaattttgagca- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 794650 71 - 1116856 TATAATGAGTAGAAATTTTTAGGTTGTT---ATTAAAGTGAAAAGACAAATAACTTTTTTCTTTTTTTGAGAAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9431645 419 - 31815103 I e mm10.chr5 124777974 1082 + 151834684 I e proCoq1.NW_012154285v1 6685055 731 - 9870158 I a score=94815.000000 s hg38.chr12_KI270834v1_alt 22857 11 + 119498 TCACCAATTTC s panTro5.chr12 127309043 11 + 137163284 TCACCAATTTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125659973 11 + 135337776 TCACCAATTTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8172919 11 - 8369578 TCACCAATTTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97821239 11 + 106955855 TCACCAATTTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123944586 11 + 133663169 TCATCAATTTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128192102 11 + 137757926 TCATCAATTTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10593186 11 - 16319837 TCATCAATTTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12215207 11 + 20526591 TCATCAATTTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119187673 11 + 128539186 TCATCAATTTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 500942 11 + 6255621 TCATCAATTTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4563383 11 - 8658521 TCATCAATTTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114768166 10 + 124281992 TC-CCAGTTTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 412420 10 - 9212255 TC-CCAGTTTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2826672 10 + 4466143 TC-CCAGTTTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1522328 10 + 5364348 TC-CCAGTTTC i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33122640 11 - 38964690 tcactgatttc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 794721 11 - 1116856 CCACGCATATC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9431645 419 - 31815103 I e mm10.chr5 124777974 1082 + 151834684 I e proCoq1.NW_012154285v1 6685055 731 - 9870158 I e otoGar3.GL873618 4254581 471 + 7922563 I a score=80708.000000 s hg38.chr12_KI270834v1_alt 22868 6 + 119498 -TCTCTG s panTro5.chr12 127309054 6 + 137163284 -TCTCTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125659984 6 + 135337776 -TCTCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8172930 6 - 8369578 -TCTCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97821250 6 + 106955855 -TCTCTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123944597 6 + 133663169 -TCTCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128192113 6 + 137757926 -TCTCTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10593197 6 - 16319837 -TCTCTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12215218 6 + 20526591 -TCTCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119187684 6 + 128539186 -TCTCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 500953 6 + 6255621 -TCTCTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4563394 6 - 8658521 -TCTCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114768176 6 + 124281992 -TCTCTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 412430 6 - 9212255 -TCTCTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2826682 6 + 4466143 -TCTCTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1522338 6 + 5364348 -TCTCTG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9432064 6 - 31815103 -TCTCTG i micMur3.chr21 I 419 C 0 s proCoq1.NW_012154285v1 6685786 6 - 9870158 -TCTCTG i proCoq1.NW_012154285v1 I 731 C 0 s canFam3.chr26 33122651 6 - 38964690 -tgccca i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 794732 6 - 1116856 CCCACT- i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124777974 1082 + 151834684 I e otoGar3.GL873618 4254581 471 + 7922563 I a score=933898.000000 s hg38.chr12_KI270834v1_alt 22874 84 + 119498 CCAAAGAATATGTTTGCAGAC-----TTGAGTTTGAGAAGTCTGCATTAAATTACACCAGATTaagctggatccaaatttggagaaaca s panTro5.chr12 127309060 84 + 137163284 CCAGAGAATATGTTTGCAGAC-----TTGAGTTTGAGAAGTCTGCATTAAATTACACCAGATTaagctggatccaaatttggagaaaca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125659990 84 + 135337776 CCAGAGAATATGTTTGCAGAC-----TTGAGTTTGAGAAGTCTGCATTAAATTACACCAGATTAAGCTGGATCCAAATTTGGAGAAACA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8172936 84 - 8369578 CCAAAGAATATGTTTGCAGAC-----TTGAGTTTGAGAAGTCTGCATTAAATTACACCAGATTaagctggatccaaatttggagaaaca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97821256 84 + 106955855 CCAAACAATATGTTTGCAGAC-----TTGAGTTTGAGAAGTCTGCATTAAATTACGCCAGATTAAGCTGGATCCAAATTTGGAGAAACC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123944603 84 + 133663169 CTGAAGAATATGTTTGCAGAC-----TTGAGTTTGAGAAGTCTGTGTTAAATTATACCAGATTAAGCTGGATCCAAATTTGGAGAAACA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128192119 84 + 137757926 CTGAAGAATATGTTTGCAGAC-----TTGAGTTTGAGAAGTCTGTGTTAAATTATACCAGATTAAGCTGGATCCAAATTTGGAGAAACA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10593203 84 - 16319837 CTGAAGAATATGTTTGCAGAC-----TTGAGTTTGAGAAGTCTGTGTTAAATTATACCAGATTAAGCTAGATCCAAATTTGGAGAAACA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12215224 84 + 20526591 CTGAAGAATATGTTTGCAGAC-----TTGAGTTTGAGAAGTCTGTGTTAAATTATACCAGATTAAGCTGGATCCAAATTTGGAGAAACA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119187690 84 + 128539186 CTGAAGAATATGTTTGCAGAC-----TTGAGTTTGAGAAGTCTGTGTTAAATTAtaccaggttaagctggatccaaatttggagaaaca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 500959 84 + 6255621 CTGAAGAATATGTTTCCAGAC-----TTGAGTTTGAGAAGTCTGTGTTAAATTAAACCAGATTAAGCTGGATCCAAATTTGGAGAAACA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4563400 84 - 8658521 ctgaagaatatgtttgcagac-----ttgagtttgagaagtctgtgttaaattataccagattaagctggatccaaatttggagaaaca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114768182 59 + 124281992 CCTACACGTATGCTTGTAGGT-----GTGAGTTTGAGAAG-------------------------GCTGCGTCCAAATTGGGAGAAACA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 412436 58 - 9212255 CCTATGCATGTGCTTGTAGAT-----GTGAG-TTGAGAAG-------------------------GCTGGATCCAAACTGGGAGAAACA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2826688 56 + 4466143 CCTACGCGTGTGCTTGTAGAT-----GTGAATTT---Aag-------------------------gctggatccaaattgggagaaaca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1522344 59 + 5364348 CCTACACATAGGCTTGTAGAT-----GTGAGTTTGagaag-------------------------gctggatccgaattgggagaaaca i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9432070 84 - 31815103 TCCAAGGATACGTTTGCAGAC-----TCGAGTTTGAGAGGTCTGCATTAAATTACATCAGATTAAGCTGGATCGGAATTTGGAGAAACA i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6685792 84 - 9870158 TCCAAGGATACGTTTGCAGAC-----TCGAGTTTGAAAGGTCTGCATTAAATTACATCAGATTAAGCCGGATCAGAATTTGGAGAAACA i proCoq1.NW_012154285v1 C 0 I 915 s otoGar3.GL873618 4255052 89 + 7922563 ccCAGGGATATATTTCTAGACACAAGTTTAGTTTAAGAAGTCTGCATTAAATTACATTAGATTAAGCTGGATCAGAATTTGAAGAAACA i otoGar3.GL873618 I 471 C 0 s canFam3.chr26 33122657 83 - 38964690 tccaagattatatttgcagac-----ccgag-ctGGTAAGTCTGCAGTAAGTTATAGCTGATGATGCTGGATCAGAATTTGGAAAAAAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 794738 64 - 1116856 ----------------CTGAC-----TCAAGTTTGAGAAATCTCCATTAAGTTACATCAG-TTAAATGGGATCAGGATTTGGAGCA--- i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124777974 1082 + 151834684 I a score=397555.000000 s hg38.chr12_KI270834v1_alt 22958 31 + 119498 tgatcttattatgtaatctaggtggcccaga s panTro5.chr12 127309144 31 + 137163284 tgatcttattatgtaatttaggtggcccaga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125660074 31 + 135337776 TGATCTTATTATGTAATTTAGGTGGCCCAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8173020 31 - 8369578 tgatcttattatgtaatctaggtggcccaga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97821340 31 + 106955855 TGAACTTATTATGTAATCTAGGTGGCCCAGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123944687 31 + 133663169 TGATCTTATTATGTAGTCTAGGAGGCCCAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128192203 31 + 137757926 TGATCTTATTATGTAGTCTAGGAGGCCCAGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10593287 31 - 16319837 TGATCTTATTATGTAGTCTAGGAGGCCCAGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12215308 31 + 20526591 TGATCTTATTATGTAGTCTAGGAGGCCCAGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119187774 31 + 128539186 tgatcttattatgtagtctaggaggcccaga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 501043 31 + 6255621 TGATCTTATTATGTAGTCTAGGAGGCCCAGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4563484 31 - 8658521 tgatcttattatgtagtctaggaggcccaga i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114768241 31 + 124281992 TGATCTTATTACGTAATCTAGGTGGCCCAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 412494 31 - 9212255 TGATCTGATTATGTAATCTAGGTGGCCCAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2826744 31 + 4466143 tgatctgattatataatctaggtggcccaaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1522403 31 + 5364348 tgatcttattacgtaatctaggtggcacaaa i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9432154 31 - 31815103 CAACCTTAATATATAATTTAGGTAGCCCAGA i micMur3.chr21 C 0 I 200 s otoGar3.GL873618 4255141 31 + 7922563 TCATCTTAATATATAATTTAGGTAGCCCAGG i otoGar3.GL873618 C 0 I 4 s canFam3.chr26 33122740 29 - 38964690 CGATCTT--TACATGATTTAGATAGTCCCAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 794802 31 - 1116856 CAATCTTGTGATAGAATCTTGGTAACCCAGG i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124777974 1082 + 151834684 I e proCoq1.NW_012154285v1 6685876 915 - 9870158 I a score=1386373.000000 s hg38.chr12_KI270834v1_alt 22989 139 + 119498 aggggattctctgaAAACACAGGACCAGCGTGGGTGGGCCATTTCCCTACACCGGGGTCTTCTGGGTC-------CCTTGCTGTCCTTCTGCCT-CTGTCCTCCCCCCTCCATGCCCTGCACAC-TTGTCAC--TAAGCCACTTGCTCCA s panTro5.chr12 127309175 139 + 137163284 aggggattctctgaAAACACAGGACCGGCGTGGGTGGGCCATTTCCCCACACCGGGGCCTTCTGGGTC-------CCTCGCTGTCCTTCTGCCT-CTGTCCTCCCCCCTCCATGCCCTGCACAC-TTGTCAC--TAAGCCACTTGCTCCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125660105 139 + 135337776 AGGGGATTCTTTGAAAACACAGGACCGGCGTGGGTGGGCCATTTCCCCACACCGGGGCCTTCTGGGTC-------CCTCGCTGTCCTTCTGCCT-CTGTCCTCCCCCCTCCATGCCCTGCACAC-TTGTCAC--TAAGCCACTTGCTCCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8173051 139 - 8369578 aggggattctctgaAAACACAGGACCAGCGTGGGTGGGCCATTTCCCCACACCGGGGCCTtctgggtc-------cctcgctgtccttctgcct-ctgtcctccccactccatgccctgcacac-ttgtcgc--taagccacttgctccg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97821371 139 + 106955855 AGGGGGTTCTCTGAAAACACAGGACCAGCGTGGGTGGGCCATTTCCCCACACCGGGGCCTTCTGGGTC-------CCTCGCTGTCCTTCTGCCT-CTGTTCTCCCCCCTCTATGCCCTACACAC-TTGTCAC--TAAGCCACTTGCTCCG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123944718 139 + 133663169 AGGGGGTTCTCTAAAAACACAGGACCAGCGTGGGTGGGTCATTTCCCTGCACCAGGGCCTTCTGGGTC-------CCTTGCTGTCCTTCTGCTT-CTGTCCTCCCCCCTCCATGCCCTGCACAC-TTGTCAC--TAAGCCACTTGCTGCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128192234 139 + 137757926 AGGGGGTTCTCTAAAAACACAGGACCAGCGTGGGTGGGTCATTTCCCTGCACCAGGGCCTTCTGGGTC-------CCTTGCTGTCCTTCTGCTT-CTGTCCTCCCCCCTCCATGCCCTGCACAC-TTGTCAC--TAAGCCACTTGCTGCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10593318 139 - 16319837 AGGGGGTTCTCTAAAAACACAGGACCAGCGTGGGTGGGTCATTTCCCTGCACCAGGGCCTTCTGGGTC-------CCTTGCTGTCCTTCTGCTT-CTGTCCTCCCCCCTCCATGCCCTGCACAC-TTGTCAC--TAAGCCACTTGCTGCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12215339 138 + 20526591 AGGGGGTTCTCTGAAAACACAGGACCAGCGTGGGTGGGTCATTTCCC-ACACCAGGGCCTTCTGGGTC-------CCTTGCTGTCCTTCTGCTT-CTGTCCTCCCCCCTCCATGCCCTGCACAC-TTGTCAC--TAAGCCACTTGCTGCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119187805 139 + 128539186 agggggttctctgaAAACACAGGACCAGCGTGGGTGGGCCATTTCCCTGCACCAGGGCCTTCTGGGTC-------CCTTGCTGTCCTTCTGCTT-CTGTCTTCCCCGCTCCATGCCCTGCACAC-TTGTCAC--TAAGCCACTTGCTGCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 501074 139 + 6255621 AGGGGGTTCTCTGAAAACACAGGACCAGCGTGGGTGGGCCATTTCCCTGCACCAGGGCCTTCTGGGTC-------CCTTGCTGTCCTTCTGGTT-CTGTCCTCCCCACTCCATGCCCTGCACAC-TTGTCAC--TAAGCCACTTGCTGCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4563515 135 - 8658521 agggggttctctgaaaacacaagaccagtgtgggtgggccatttccctgcaccaGGGCCTTCTGGGTC-------CCTTGCTGTCCTTCTGCTT-CTGTCCTCCCCCCTCCATGCCCTGCACAC-TTGTCAC--TAAGCCActtgc---- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114768272 111 + 124281992 AGGGGTTTCTCTGAGAGCTCAGGACCAGCGTGACTGGGCAATTTCCCCACACAAGGGC-------------------------------------CTGTCCACCCCGCTCCATGCCCTGCATAT-TTGGCAT-TTAAGCCACTTACTGCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 412525 140 - 9212255 AGGGGCTTCTCTGGGAACGCAGGACCGGCCTGGCTGGGCAATTTCCCTGCACCGGGGCCTTCTAGACC-------CTTTGCTTTTCTTCTGCTT-CTGTCCACCCCACTCCATGCCCTGCATGC-TTGTCAC-TTAAGCCACTTAGTGCG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2826775 141 + 4466143 aggggcttctctgaGAACACAGGACCAGCGTGGCTGGGCAATTTCCCCGCACCAGGGCCTTCTAGATC-------CTTTGCTTTCCTTCTGCCT-TTGTCCACCCCCCTCCATGCCCTGCGTGCTTTGTCAC-TTAAGCCACTTACTGCG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1522434 140 + 5364348 aggggcttctctgaGAACACAGGACCAGCGTGGCTGGGCAATTTCCCCGCCCAGGGGCCTTCTAGATC-------CTTTGCTGTCCTTCTGCCT-CTGTCCACCCCCCTCCATGCCCTGCATGC-TTGTCAC-TTGAGCCACTTACTGCG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4255176 82 + 7922563 AGTGATTTTTTTGACAATACAGGACCAGAGTAGCTGGACCATTTTCCTGCACTGAGGTCCTCTGTGGT-------CCCCG------------------------------CATACCCTG------------------------------- i otoGar3.GL873618 I 4 C 0 s canFam3.chr26 33122769 139 - 38964690 AGTTGGTTCTGTGACAA-AGGGGACCAGAGTGCCTGGGCCATGTCCCTGCACCGGGGTCCCCTGGGAT-------CCTGGC-GTGCTCTGATGT-ACTCCCTACCCCCTGTGTGCCCCACATTC-TTGTCACCTTATGCCACTTGCCTTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 794833 139 - 1116856 AGTGGGTTCTTT----------GACCAGAGCAGCTGGGCCATTTCCCTGCCCAGGGGCCTGTTTAGTCCCCACATCCCCACTGCTCTTCCTCTCACTGTCATTGCCCCCTCATGCCCTGCCCCT-TTGTCACCTCATGTTAATCACTCCA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9432185 200 - 31815103 I e mm10.chr5 124777974 1082 + 151834684 I e proCoq1.NW_012154285v1 6685876 915 - 9870158 I a score=472602.000000 s hg38.chr12_KI270834v1_alt 23128 44 + 119498 CAGTCATACCATGCCTTGTGACACCACATGTGTCCCCATCTGAG s panTro5.chr12 127309314 44 + 137163284 CAGTCATACCATGCCTTGTGACACCACATGTGTCCCCATCTGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125660244 44 + 135337776 CAGTCATACCATGCCTTGTGACACCACATGTGTCCCCATCTGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8173190 44 - 8369578 cagtcataccatgccttgtgacaccacatgtgtccccatctgag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97821510 44 + 106955855 CAGTCATACCATGCCTTGTGACACCACATGCGTCCCCACCTGAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123944857 44 + 133663169 CAGTCAAACCCTGCCCTGTGACACCATGTCCGTCCCCAGCTGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128192373 44 + 137757926 CAGTCAAACCCTGCCCTGTGACACCATGTCCGTCCCCAGCTGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10593457 44 - 16319837 CAGTCAAACCCTGCCCTGTGACACCATGTCCGTCCCCAGCTGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12215477 44 + 20526591 CAGTCAAACCCTGCCCTGTGACACCATGTCCGTCCCCAGCTGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119187944 44 + 128539186 CAGTCAAACCCTGCCCTGTGACACCATGTGCGTCCCCAGCTGAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 501213 44 + 6255621 CAGTCAAACCCTACCCTGTGACACcacgtgcgtccccatctgag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4563650 41 - 8658521 ---gcaaaccctgccctgtgacaccatgtgcgtccccatctgag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114768383 44 + 124281992 CAGTCACAccgtgccctgtgacaccacatgcatccctatctgag i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 412665 44 - 9212255 CGGTCACACCATGCCTTGTGACACCACATGCGTCCTTATCTGAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2826916 44 + 4466143 CAGTCACACTGTGCCCTGTGACACCACATGTGTCCCTATCTGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1522574 44 + 5364348 CAGTCACACCGTGCCCTGTGACACCACATGCGTCCCTATCTGAG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6686791 44 - 9870158 CAGTCGTAGCATACCCTGTGACACCGTATTTGTCCCCATCCATC i proCoq1.NW_012154285v1 I 915 C 0 s canFam3.chr26 33122908 44 - 38964690 AGGGCACACTGGGCCCTGTCACAACATTTTTGTCCCTGTCTGCC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 794972 43 - 1116856 TAGACACACCATGCC-TGTGACACTATATGCACCTCTTATTGCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9432185 200 - 31815103 I e mm10.chr5 124777974 1082 + 151834684 I e otoGar3.GL873618 4255258 0 + 7922563 C a score=2659720.000000 s hg38.chr12_KI270834v1_alt 23172 208 + 119498 TGGAATTGTCCCTTCTTC--CCTTCA--CTGGAAAACTCCTATACATCCTTT----------AGAGCCCCAT-------TCCAGGATGAAAATTCAGCTTGAG------CTGG---------------------------TGGCCCTGTCATCTCACATGCGTCCTCCTCAGATCTTGGCAGGGCTCAC-------TGTTAAGAGATTGTGTCAGCTGGAGACTGTTCAATAT-TTTCAGGATTCCAGTAAAGGGTCTGGATAGATTTCC--------------------------------------------------------------- s panTro5.chr12 127309358 208 + 137163284 TGGAATTGTCCCTTCTTC--CCTTCA--CTGGAAAACTCCTATACATCCTTT----------AGAGCCCCAT-------TCCAGGATGAAAATTCAGCTTGAG------CTGG---------------------------TGGCCCTGTCATCTCACATGCGTCCTCCTCAGATCTTGGCAGGGCTCAC-------TGTTAAGAGATTGTGTCAGCTGGAGACTGTTCAATAT-TTTCAGGATTCCAGTAAAGGGTCTGGATAGATTTCC--------------------------------------------------------------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125660288 208 + 135337776 TGGAATTGTCCCTTCTTC--CCTTCA--CTGGAAAACTCCTATACATCCTTT----------AGAGCCCCAT-------TCCAGGATGAAAATTCAGCTTGAG------CTGG---------------------------TGGCCCTGTCATCTCACATGCGTCCTCCTCAGATCTTGGCAGGGCTCAC-------TGTTAAGAGATTGTGTCAGCTGGAGACTGTTCAATAT-TTTCAGGATTCCAGTAAAGGGTCTGGGTAGATTTCC--------------------------------------------------------------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8173234 208 - 8369578 tggaattgtcccttcttc--ctttca--ctggaaaactcctatacatccttt----------agagccccat-------tccagGATGAAAATTCAGCTTGAG------CTGG---------------------------TGGCCCTGGCATCTCACATGCGTCCTCCTCAGATCTCGGCAGGGCTCAC-------TGTTAAGAGATTGTGTCAACTGGAGACTGTTCAATAT-TTTCAGGATTCCAGTAAAGGGTCTGGATAGATTTCC--------------------------------------------------------------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97821554 215 + 106955855 TGGAATTGTCCCTTCTTC--CCTTTT--CTGGAAAACTCCTATACATCCTTT----------AGAGCCCCATGGGGAGGTCCAGGATGAAAATTCAGCTTGAG------CTGG---------------------------TGGCCCTGGCATCCCACATGCATCCTCCTCAGACCTCGGCGGGGCTCAC-------TGTTAAGAGATGGTGTCAACTGGAGACTGTTCAATAT-TTTCAGGATTCCAGTAAAGGGTCTGGATAGATTTCC--------------------------------------------------------------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123944901 214 + 133663169 TGGAATTGTCCC-TCTTC--CCTTTA--CTGGAAAACTCCTATACATCCTTC----------AGAGCCCCATTGGGAGGTCCAGGATGAAAATTCAGCTTGAG------CTGG---------------------------TGGCCCTGGCATCCCACCTGCCTCCTCCTCAGGTCTTGGTGGGGCTCAC-------TGTTAAGAGAGTGTGTCAACTGGAGACTGTTCAATAT-TTTCAGGATTCCAGTAAGAGGTCTGGATAGGTTTCC--------------------------------------------------------------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128192417 214 + 137757926 TGGAATTGTCCC-TCTTC--CCTTTA--CTGGAAAACTCCTATACATCCTTC----------AGAGCCCCATTGGGAGGTCCAGGATGAAAATTCAGCTTGAG------CTGG---------------------------TGGCCCTGGCATCCCACCTGCCTCCTCCTCAGGTCTTGGTGGGGCTCAC-------TGTTAAGAGAGTGTGTCAACTGGAGACTGTTCAATAT-TTTCAGGATTCCAGTAAGAGGTCTGGATAGGTTTCC--------------------------------------------------------------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10593501 214 - 16319837 TGGAATTGTCCC-TCTTC--CCTTTA--CTGGAAAACTCCTATACATCCTTC----------AGAGCCCCATTGGGAGGTCCAGGATGAAAATTCAGCTTGAG------CTGG---------------------------TGGCCCTGGCATCCCACCTGCCTCCTCCTCAGGTCTTGGTGGGGCTCAC-------TGTTAAGAGAGTGTGTCAACTGGAGACTGTTCAATAT-TTTCAGGATTCCAGTAAGAGGTCTGGATAGGTTTCC--------------------------------------------------------------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12215521 214 + 20526591 TGGAATTGTCCC-TCTTC--CCTTTA--CTGGAAAACTCCTATACATCCTTC----------AGAGCCCCATTGGGAGGTCCAGGATGAAAATTCAGCTTGAG------CTGG---------------------------TGGCCCTGGCATCCCACCTGCCTCCTCCTCAGGTCTTGGTGGGGCTCAC-------TGTTAAGAGAGTGTGTCAACTGGAGACTGTTCAATAT-TTTCAGGATTCCAGTAAGAGGTCTGGATAGGTTTCC--------------------------------------------------------------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119187988 215 + 128539186 TGGAATTGTCCCTTCTTC--CCTTTA--CTGGAAATCTCCTATACATCCTTC----------AGAGCCCCATTGGGAGGTCCAGGATGAAAATTCAGCTTGAG------CTGG---------------------------CGGCCCTGGCATCCCACCTGCCTCCTCCTCAGGTCTCGGTGGGGCTCAC-------TGTTAAGAGAGTGTGTCAACTGGAGACCGTTCAATAT-TTTCAGGATTCCAGTAAGGGGTCTGGATAGATTTCC--------------------------------------------------------------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 501257 215 + 6255621 tggaattgtcccttcttc--ccttta--ctggaaaactcctatacatccttc----------agAGCCCCATTGGGAGGTCCAGGATAAAAATTCAGCTTGAA------CTGG---------------------------TGGCCCTGGCATCCTACCTGCCTCCTCCTCAGGTCTTGGTGGGGCTCAC-------TGTTAAGAGAGTGTGTCAACTGGAGACCGTTCAATAT-TTTCAGGATTCCAGTAAGAGGTCTGGATAGGTTTCC--------------------------------------------------------------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4563691 215 - 8658521 tggaattgtcccttcttc--ccttta--ctggaaaactcctatccatccttc----------agagccccactgggaagtccAGGATGAAAATTCAGCTTGAG------CTGG---------------------------TGGCCCTGGCATCCCACCTGCCTCCTCCTCAGGTCTCGGTGGGGCTTAC-------TGTTAAGAGAGTGTGTCAACTGGAGACTGTTCAATAT-TTTCAGGATTCCAGTAAGGGGTCTGGATAGATTTCC--------------------------------------------------------------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114768427 223 + 124281992 tggaattgtcccttcttc-cccttca--ctggaaaactcctatacatccttt----------agagccccagTGGGAGATCTGGGGTGAAAATTGAGCTTGAG------CTGG---------------------------TGGCCCTGGCATCCTACTTGCCTTCTTCTCAGATCTTGACAGGGCTCAAGAGATCTTGTTAAGAGATTGTGTCAACTGGCGACTGTTCAGTAT-TTTCAGGATTCTAGTAAAGGGTCTGGATAGATTTCC--------------------------------------------------------------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 412709 216 - 9212255 TGGAATTGTCCCTCCTTC-CCCTTCA--CTGGAAAACTCCTATACATCCTTT----------AGAGCCACATTGGGAGATCTGGGATGAAAACTGAGCTTGAG------CTGG---------------------------TGGCCCTGGCATCTCACTTGCCGCCTTCTCAGATCTTGGTGGGACTCAG-------TGTTGAGAGATTGTGTCAGCTGGAGACTGTTCAGTAT-TTTCAGGATTCTGGTAAAGGGTCTGGATAGATTTCC--------------------------------------------------------------- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2826960 213 + 4466143 TGGGATTGTCCCTTCTTC-TCCTTCA--CTAGAAAACTCCTATACATCCTTT----------AGAGCCCCAGTGGGAGATCTGGGATGAAAACTGAGCTTGAG------CTGG---------------------------TGGCCCTGGCATCCCACTTGC---CTTCTCAGATCTTGGCGGGGCTCAC-------TGTTAAGAGACTGTGTCAGCTGGAGACTGTTCAGAAT-TTTCAGGATTCTAGTAAAAGGTCTGGATAGGTTTCC--------------------------------------------------------------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1522618 216 + 5364348 TGGAATTGTCCCTTCTTC-CCCTTCA--CTGGAAAACTCCTATACATCCTTT----------AGAGCCCCATTGGGAGATCTGGGATGAAAATTGAGCTTGAG------CTGG---------------------------TGGCCCTGGCATCCCACTTGCCTTCTTCTCAGATCTTGGCGGGGCTCAC-------TGTTAAGAGATTATGTTAACTGGAGACTGTTCGGTAT-TTTCAGGATTCTAGTAAAGGGTCTGGATAGATTTCC--------------------------------------------------------------- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9432385 216 - 31815103 TGGAATTGTCCTTTCTTT-CCCTTCA--CTGGAGAACTCCTACACATCCTCC----------AGAGCCCCACTGGGGGGTTCAGATTCAAAATTGAGCTTGAG------CCCG---------------------------TGGCCCTGGCATCCCACCTGCTTTCTCTGCAGACCTTGTCAGGGGTCAC-------TGTCAAGAGATTATGTAAACTGAATACTGTTAAATAT-ATTCCGGATCCCAGTAAAGGTTCTGGATACATTTCC--------------------------------------------------------------- i micMur3.chr21 I 200 I 904 s proCoq1.NW_012154285v1 6686835 216 - 9870158 TGGAATTGTCCTTTCTTT-CCCTTCA--CTGGAAAACTCCTACACATCCTCC----------AGAGCCCCACTGGGGGGTTCAGATTCAAAACTGAGCTTGAG------CTGG---------------------------TGGCCCTGGCATCCCACCTGCTTTCTCTCCAGACCTCGTCAGGGGTTAC-------TGTCCAGAGATTATGTAAACTGGATACTGCTAAATAT-TTTCAGGATCTCAGTAAAGCTTCTGGGTACATTTCC--------------------------------------------------------------- i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4255258 78 + 7922563 -------TTCCTCCCTTA-CCCTACA--------------------------------------------------------------------------------------G---------------------------CTGCTCTGTCCTCACTCC----------------------------------------------------------------------AATAT-TTTCAGGATCCCAGTAAAAGTTCTGCATACATTTCC--------------------------------------------------------------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33122952 230 - 38964690 TAGGATTGTCCTTCCTTC--CCTTGTGCCTGAAAAACTCCTCTATATCCTCCAAGGCCCTATAGAGCCTCATCGAGAGGGCTAG--TGAGGATTC-GCTCGTGGGTCCCTCTG---------------------------TGCCCCTGGCACCCCACCACTTTTTCTCTTAGACCACAGTGCAGTTCAT-------TGTCAAGAGATTGTGGAAACTAGATACTGTTAAACAT-TTTCAGGATTCCCATAAAGGCTTTGGATGGATTTTC--------------------------------------------------------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 795015 318 - 1116856 TGGAGTCATCCTTTCTTTCCCTTTCA--CCTGAAAACTCCTAGTCATCCTCCAAAGCCCTAAAAAGCCTTATTGCTGGGTTCAGGACCAAACTTCAGCTTGGG------CTGGTGAGGATTCTGTCATGGGCATTGAAGCTGGCAATAGTTTCTCACCTGTTTTTTCCCTACACTTCCATGGGACTGAC-------TGTCAAGAGGGTATGTAAGCTGGTTGCTGTTAAAAATATCTAAAGATTCCCATAAAGGTTCTGGATAGACTTTtttttttaagatttatgtttaatttatttctctcccctccccccacattgtctgctttctgtcc i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124777974 1082 + 151834684 I a score=219393.000000 s hg38.chr12_KI270834v1_alt 23380 19 + 119498 ------------------------CTTTGATGagttcttttga s panTro5.chr12 127309566 19 + 137163284 ------------------------CTTTGATGAGGTCTTTTGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125660496 19 + 135337776 ------------------------CTTTGATGAGGTCTTTTGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8173442 19 - 8369578 ------------------------CTTTGATGagttcttttga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97821769 19 + 106955855 ------------------------CTTTGATGagttattttga i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123945115 19 + 133663169 ------------------------TTTTGATGagttcttctga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128192631 19 + 137757926 ------------------------TTTTGATGagttcttctga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10593715 19 - 16319837 ------------------------TTTTGATGagttcttttga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12215735 19 + 20526591 ------------------------TTTTGATGagttcttttga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119188203 19 + 128539186 ------------------------TTTTGATGAGTTCTTTTGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 501472 19 + 6255621 ------------------------TTTTGATGAGTTCTTTTGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4563906 19 - 8658521 ------------------------TTTTGATGagttcttttga i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114768650 19 + 124281992 ------------------------TTTGGATGAGCCCTTTTGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 412925 19 - 9212255 ------------------------TTCGGATGagctcttttga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2827173 19 + 4466143 ------------------------TTTGGATGagctcttttga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1522834 19 + 5364348 ------------------------TTTGGATGAACTCTTTTGA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6687051 19 - 9870158 ------------------------CTGTAATTagttcttctga i proCoq1.NW_012154285v1 C 0 I 836 s otoGar3.GL873618 4255336 19 + 7922563 ------------------------TTCTAATTAATTGTTCTGA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33123182 19 - 38964690 ------------------------TTTTAATTGGTTCTCCTGG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 795333 43 - 1116856 atttgataagtgtGGATAGACTTTTTTTCATTAGTCCTTCTGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9432601 904 - 31815103 I e mm10.chr5 124777974 1082 + 151834684 I a score=11012.000000 s hg38.chr12_KI270834v1_alt 23399 1 + 119498 g s panTro5.chr12 127309585 1 + 137163284 G i panTro5.chr12 C 0 C 0 s panPan2.chr12 125660515 1 + 135337776 G i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8173461 1 - 8369578 g i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97821788 1 + 106955855 g i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123945134 1 + 133663169 g i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128192650 1 + 137757926 g i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10593734 1 - 16319837 g i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12215754 1 + 20526591 g i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119188222 1 + 128539186 G i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 501491 1 + 6255621 G i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4563925 1 - 8658521 g i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114768669 1 + 124281992 G i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 412944 1 - 9212255 g i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2827192 1 + 4466143 g i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1522853 1 + 5364348 G i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4255355 1 + 7922563 T i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33123201 1 - 38964690 G i canFam3.chr26 C 0 I 42 s dasNov3.JH568189 795376 1 - 1116856 A i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9432601 904 - 31815103 I e mm10.chr5 124777974 1082 + 151834684 I e proCoq1.NW_012154285v1 6687070 836 - 9870158 I a score=1453657.000000 s hg38.chr12_KI270834v1_alt 23400 176 + 119498 ggatttttg---gggctgagctgactgctcc-cgagagagggaattaacctgcaatgtatatagatttccagaagctgtgtttctC----------------------------------------------------------------------AGAGCCAGGAGGC-------------------------AGCAGCTATCTGCT------------------CTTCCCCctgggccatctgggccatct------------gggc-cTCTTGTGGGATACTGAGGC----TA-----------------------------------GGGATGGTCTCAGG s panTro5.chr12 127309586 180 + 137163284 GGATTTTTG---GGGCTGAGCTGACTGCTCC-CGAGAGAGGGAATTAACCTGCAATGTATATAGATTTCCAGAAGCTGTGTTTCTC----------------------------------------------------------------------AGAGCCAGGAGGC-------------------------AGCAGCTATCTGCT------------------CTTCCCCctgggccatctgggccatct------------gggc-cTCTTGTGGGATACTGAGGCAGGGTA-----------------------------------GGGATGGTCTCAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125660516 180 + 135337776 GGATTTTTG---GGGCTGAGCTGACTGCTCC-CGAGAGAGGGAATTAACCTGCAATGTATATAGATTTCCAGAAGCTGTGTTTCTC----------------------------------------------------------------------AGAGCCAGGAGGC-------------------------AGCAGCTATCTGCT------------------CTTCCCCctgggccatctgggccatct------------gggc-cTCTTGTGGGATACTGAGGCAGGGTA-----------------------------------GGGATGGTCTCAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8173462 176 - 8369578 ggatttttg---gggctgagctgactgctcc-cgagagagggaattaacctgcaatgtatatagatttccagaagctgtgtttctC----------------------------------------------------------------------AGAGCCAGGAGAC-------------------------AGCAGCTATCTGCT------------------CTTCCTCctgggccatctgggccatct------------gggc-cTCTTGTGGGATACTGAGGC----TA-----------------------------------GGGATGGTCTCAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97821789 171 + 106955855 ggatttttg---gggctgagctgactgctcc-cgagagaggaaattaacctgcaacgtatgtagatttccagaagctgtgtttctc----------------------------------------------------------------------agagccaggaggc-------------------------agcagctatctgct------------------cttcccc---------cggggccatct------------GGGC-CTCTTGTGGGATACGGAGGCAGGGTA-----------------------------------GGGATGGTCTCAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123945135 163 + 133663169 ggatttttg---gggctgagctgactgctcc-cgagagagggaattaac-------gcatgtaggtttccagaagctgtgtttctC----------------------------------------------------------------------AGAGCCAGGAGGC-------------------------AGCAGCTATCTGCT------------------CTT-CCC---------AGGGCCCATCT------------GGGC-CTCTTGTGGGATACCGAGGAGGGGTG-----------------------------------GGGATGGCCTCAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128192651 163 + 137757926 ggatttttg---gggctgagctgactgctcc-cgagagagggaattaac-------gcatgtaggtttccagaagctgtgtttctC----------------------------------------------------------------------AGAGCCAGGAGGC-------------------------AGCAGCTATCTGCT------------------CTT-CCC---------AGGGCCCATCT------------GGGC-CTCTTGTGGGATACTGAGGAGGGGTG-----------------------------------GGGATGGTCTCAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10593735 164 - 16319837 ggatttttg---gggctgagctgactgctcc-cgagagagggaattaac-------gcatgtaggtttccagaagctgtgtttctc----------------------------------------------------------------------agagccaggaggc-------------------------agcagctatctgct------------------cttcccc---------agggCCCATCT------------GGGC-CTCTTGTGGGATACCGAGGAGGGGTG-----------------------------------GGGATGGCCTCAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12215755 164 + 20526591 ggatttttg---gggctgagctgactgctcc-cgagaaagggaattaac-------gcatgtaggtttccagaagctgtgtttctc----------------------------------------------------------------------agagccaggaggc-------------------------agcagctgtctgct------------------cttcccc---------agggCCCATCT------------GGGC-CTCTTGTGGGATACCGAGGAGGGGTG-----------------------------------GGGATGGTCTCAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119188223 164 + 128539186 GGATTTTTG---GGGCTGAGCTGACTGCTCC-TGAGAGAGGGAATTAAC-------GGATGTAGGTTCCCAGAAGCTGTGTTTCTC----------------------------------------------------------------------AGAGCTAGGAGGC-------------------------AGCAGCTGTCTGCT------------------CTTCCCC---------AGGGCCCATCT------------GGGC-CTCTTGTGGGATACCGAGGAGGGGTG-----------------------------------GGGAAGGTCTCAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 501492 163 + 6255621 GGATTTTTG---GGGCTGAGCTGACTGCTCC-CGAGAGAGGGAATTAAC--------GATGTAGGTTTCCAGAAGCTGTGTTTCTC----------------------------------------------------------------------AGAGCCAGGAGGC-------------------------AGCAGCTGTCTGCT------------------CTTCCCC---------AGGGCCCATCT------------GGGC-CTCTTGTGGGATACCGAGGAGGGGTG-----------------------------------GGGATGGTCTCAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4563926 164 - 8658521 ggatttttg---gggctgagctgactgctcc-cgagagagggaattaac-------acatgtaggtttccagaagctgtgtttctc----------------------------------------------------------------------agagccaggaggc-------------------------agcagctgtctgct------------------cttcccc---------agggCCCATCT------------GGGC-CTCTTGTGGGATACCGAGGAGGGGTG-----------------------------------GGGATGGTGTCAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114768670 168 + 124281992 GTG-TGTGG---GGGCTGAGCTGATTGCTCC-CGAGAGAGGGATTTAGCATGTAATGCATGTAGATTTCCAGAGGCTGTGTTTCTC----------------------------------------------------------------------AGAGCCAGGGGGC-------------------------CGCAGCTGTCTGTT------------------GGTCCCT---------AGGGACCGTCT------------GGGC-CTCTTGTGGGATACCGAGGGCGGG-------------------------------------GGAATGGTCTCAGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 412945 204 - 9212255 gta-ttttg---gggctgagctgattgctcc-cgagagaaggatttagcatgtaatgcgtgtagatttccagaagctgtgtttctc----------------------------------------------------------------------agagcca-gaggc-------------------------tgcagctgtctgtt------------------ggtccct---------agggaccatct------------gggC-CTCTTGTACGATACCAAGGGCGGGGGAATGGTCTCAGGGTGGACTTGAAAGTCAAGGCAGTGGAATGGTCTCAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2827193 168 + 4466143 gta-ttttg---gggctgagctgattgctcc-caagagagggatttagcatgtaatgcatgtcgatttccagaagctgtgtttctc----------------------------------------------------------------------agagccagggggc-------------------------tgaagctatctgtt------------------agtccct---------agagaccatct------------gggC-CTCTTGCAGGATACCGAGGGTGGG-------------------------------------GGAATGGTCTCAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1522854 168 + 5364348 GTA-TTTTG---GGGCTGAGCTGACTGCTCC-CGAGAGAGGGATTTAGCGTGTAATGCATGTAGATTTCCAGAAGCTGTGTTTCTC----------------------------------------------------------------------AGAGCCAGGGGGC-------------------------CGCAGCTATCTGTT------------------GGTCCCT---------AGGGACCATCT------------GGGC-CTCTTGTGGGATACCGAGGACGGG-------------------------------------GGAATGGTCTCAGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4255356 157 + 7922563 GCA-TGTCA---GGGTGGAGCTGAGTGCCCCATGGGAGGGAAATTTAACCTGTTTTGCAGGTGGGTTT-CAGGAGCTGAGTT--TT----------------------------------------------------------------------AAGGGCAGAAGG--------------------------AGGAGCAGTCTGCT------------------CTTCCCC---------AGGGGATAACC------------TGG----------GGATACAGAGGA-GAGTG-----------------------------------AGAACAGTCTCAAT i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 795377 287 - 1116856 ---AATTTGAAAGGGCTGAGCTTACGACTCCATGGCAGGGAAATTTAGCCTGTAACCTCCTTAGGTGTCTAGAAGCTCtttttttttttttttttaattcttttattGTCttttttttttttttaaagatacatagatcgcaaaaaagttacattaagaaatatgaggttcccacaaaccccaccccacccccAAGAAGCTGTGTTTTTAAAAGCAGGCCTGTCAGTGTCCCT---------GAGGGCAGCCCTGTGAATCCAGAGGGCAATCCTGTGGGGTACTGGGGATTGGCG-----------------------------------AGG----------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9432601 904 - 31815103 I e mm10.chr5 124777974 1082 + 151834684 I e proCoq1.NW_012154285v1 6687070 836 - 9870158 I e canFam3.chr26 33123202 42 - 38964690 I a score=6981110.000000 s hg38.chr12_KI270834v1_alt 23576 679 + 119498 GCCGACCTATGAGTCAAGGCAGTGGCCTTGTTTTGGGGGAGGC--TGGCTGTCTTCCGGGCTGCCCTCTCGTTGGTGATGCAGACTGTGCCTCCTAACAACAAAAATTTTCTGTCCTCTGCCTGGCTGGTGGACAATC-AAAA----------------------------------------------AAAATAAA--------------ATA--GAAAA--------------CTTCACCGAGAGACGACCG----------GACTCAACCTTCAGCTAAAAAGGCTAAGAA---------------------------------TATAGG-GATTTCCGTGGTTTGTTGG---TACCTGGGGCAACCAGAGGAATGAAGACTGGTTTCTTGAGGGGTTT-GAGGTGGGATTC-TTTAGGCAGG---AGTGACTGCATGAAGTCCAG-GCACCCGCA-------GAAG----------GTGCAAA-----------GCCAGGTGAGAGGAATGGAAGCCGGCGctgtgtgaggtggtgggctgggcgct---cccaacctgggctgtctcctttcatcgccacagccgtgccacgaggtgggttgcatttctgttgtgcagaaaaataaactgagactcagagaggttaagtgacctgctgagggtcacacagc--------------tTCTTGTATCAGCCCCAG----------ACTCTGTGCTTCGCCAACC-TGGGCCCCTTCTCCAAG-GTAGTG-CCCTGGGTTCAGGTCTGAGTTTGG--GGTTCCACTGAGACCTGCCCTCC--------CCAAGGCCTTCAG---CGAGGG----GGG-CCCTGCATTGAACACCGGGGAGGGAAAAAGAGACAAG s panTro5.chr12 127309766 678 + 137163284 GCCGACCTGTGAGTCAAGGCAGTGGCCTTGTTTTGGGGGAGGC--TGGCTGTCTTCCGGGCTGCCCTCTTGTTGGTGATGCAGACTGTGCCTCCTAACAACAAACA-TTTCTGTCCTCTGCCTGGCTGGTGGACAATC-AAAA----------------------------------------------AAAATAAA--------------ATA--GAAAA--------------CTTCACCGAGAGACGACCG----------GACTCAACCTTCAGCTAAAAAGGCTAAGAA---------------------------------TATAGG-GATTTCTGTGGTTTGTTGG---TACCTGGGGAAACCAGAGGAATGAAGACTGGTTTCTTGAGGGGTTT-GAGGTGGGATTC-TTTAGGCAGG---AGTGACTGCATGAAGTCCAG-GCACCCGCA-------GAAT----------GTGCAAA-----------GCCAGGTGAGAGGAATGGAAGCCGGCGctgtgtgaggtggtgggctgggcgct---cccaacctgggctgtctcctttcatcgccacagctgtgccacgaggtgggttgcatttctgttgtgcagaaaaataaactgagactcagagaggttaagtgacctgctgagggtcacacagc--------------tTCTTGTATCAGCCCCAG----------GCTCTGTGCTTCGCCAACC-TGGGCCCCTTCTCCAAG-GTAGTG-CCCTGGGTTCAGGTCCGAGTTTGG--GGTTCCACTGAGACCTGCCCTCC--------CCAGGGCCTTCAG---CGAGGG----GGG-CCCTGCATTGAACACCGGGGAGGGAAAAAGAGACAAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125660696 678 + 135337776 GCCGACCTGTGAGTCAAGGCAGTGGCCTTGTTTTGGGGGAGGC--TGGCTGTCTTCCGGGCTGCCCTCTTGTTGGTGATGCAGACTGTGCCTCCTAACAACAAAAA-TTTCTGTCCTCTGCCTGGCTGGTGGACAATC-AAAA----------------------------------------------AAAATAAA--------------ATA--GAAAA--------------CTTCACCGAGAGACGACCG----------GACTCAACCTTCAGCTAAAAAGGCTAAGAA---------------------------------TATAGG-GATTTCCGTGGTTTGTTGG---TACCTGGGGCAACCAGAGGAATGAAGACTGGTTTCTTGAGGGGTTT-GAGGTGGGATTC-TTTAGGCAGG---AGTGACTGCATGAAGTCCAG-GCACCCGCA-------GAAG----------GTGCAAA-----------GCCAGGTGAGAGGAATGGAAGCCGGCGctgtgtgaggtggtgggctgggcgct---cccaacctgggctgtctcctttcatcgccacagccgtgccacgaggtgggttgcatttctgttgtgcagaaaaataaactgagactcagagaggttaagtgacctgctgagggtcacacagc--------------tTCTTGTATCAGCCCCAG----------GCTCTGTGCTTCGCCAACC-TGGGCCCCTTCTCCAAG-GTAGTG-CCCTGGGTTCAGGTCCGAGTTTGG--GGTTCCACTGAGACCTGCCCTCC--------CCAAGGCCTTCAG---CGAGGG----GGG-CCCTGCATTGAACACCGGGGAGGGAAAAAGAGACAAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8173638 666 - 8369578 GCCGACCTATGAGTCAAGGCAGTGGCCTTGTTTTGGGGGAGGC--TGGCTGTCTTCCGGGCTGCCCTCTTGTTGGTGATGCAGACTGTGCCTCCTAACAACAAAAA-TTTCTGTCCTCTGCCTGGCTGGTGGACAATC-AAAA----------------------------------------------AAAATAAA--------------ATA--GAAAA--------------CTTCACCGAGAGACAACCG----------GACTCAACCTTCAGCTAAAAAGGCTAAGAA---------------------------------TATAGG-GATTTCCGTGGTTTGTTGG---TACCTGGGGCAACCAGAGGAATGAAGACTGGTTTCTTGAGGGGTTT-GAGGTGGGATTC-TTTGGGGAGG---AGTGACTGCATGAAGTCCAG-GCACCTGCA-------GAAG----------GTGCAAA-----------GCCAGGCGAGAGGAATGGAAGCCGGCGctgtgtgaggtggtgggctgggcgct---cccaacctgggctgtctcctttcatcgccacagccatgccacgaggtgggttgcatttctgttgtgcagaaaaataaactgagactcagagaggttaagtgacctgctgagggtcacacagc--------------tTCTTGTATCAGCCCCAG----------GCTCTGTGCTTCGCCAACC-TGGGCCCCTTCTCCAAG-GTAGTG-CCCTGGGTTCAGGTCCGAGT--------------TGAGATCTGCCCTCC--------CCAACGTCTTCAG---CTAGGG----GGG-CCCTGCATTGAACACCGGGGAGGGAAAAAGAGACAAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97821960 683 + 106955855 GCTGACCTGTGAGTCAAGACAGTGGCCTTGTTTTGGTGGAGGC--TGGCTGTCTTCCGGGCTGCGCCCTTTTTGGTGATGCAGACGGTGCCTCCTAACAACAAAAA-TTTCCGTCCTCTGCCTGGCTGGTGGACAATCAAAAA----------------------------------------------AAAATAAA--------------ATA--GAAAA--------------CTTCACCGAGAGACAACCG----------GACTCAACCTTCAGCTAAAGAGGCTAAGAA---------------------------------TATAGG-GATTTCCGTGGTTTGTTGG---TACCTGGGGCAACCAGAGGAATGAAGACTGGTTTCTTGAGGGGTTT-GAGGTGGGATTC-TTTAGGGAGG---AGTCACTGCATGAAGTCCAG-GCACCTGCA-------GAGG----------GTGCAAA-----------GCCAGGTGAGAGGAATGGAAGCCGGCactgtgtgaggcggtgggctgggcact---cccaacctgggccgtctcctttaatcgccacagccgtgccacaaggtaggttgcatttctgttgtgcagaaaaataaactgagactcagagaggttaagtgacctgctgagggtcacacagc--------------tGCTTGTATCAGCCCCAG----------GCTCTGTGCTTCACCAACC-TGGGCCCCCTCTCCAAG-GTGGTGCCCCTGAGTTCAGGTCTGAGTTTGG--GGTTCCACTGAGACCTGCCCTCC--------CCAAGGCCTTCAGTGATGAGGG----GGG-CCCTGCATTGAACACCGGGGAGGGAAAAAGAGACAAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123945298 676 + 133663169 GCGCACCTGTGAGTCGAGGCAGTGGCCTTGTTTTGGGGGAGGC--TGGCTGTCTTCCAGGCTGCCCTCTTGTTGGTGATGCAGACTGTGCCTCCTAAAAATAAAAA-TTTCTGTCTTCTGCCTGGCTGGCGGACAATC-AAAA----------------------------------------------AAAATAAA--------------ACC--GAAAA--------------CTTCACCGAGAGACAACCA----------GACTCAACCTTCAGCTAAAGAGGCTAAGAA---------------------------------TATAGG-GATTTCCGTGGTTCGTTGG---TACCTGGGGCAACCAGAGGAATGAAGACTGGTTTCTTGAAGGGTTT-GAGGTGGGATTC-TTTAGGGAGG---AGTGACCACATGAAGTCCAG-GCACCCGCA-------GAGG----------GTGCAAA-----------GCCAGGT-AGAGGAATGGAagcgggtgctctgtgacgtggtgggctgggcgct---cccaacctggcctgtctcccttaatcgccacagccgtgccatgaggtaggttgcatttctgttgtgcagaaaaataaactgagactcagagaggttaagtgatctgttgagggtca-atggc--------------ttcttgtatcagccccag----------gctctgtgcttcgtcaacc-tgggcccc-tctcccag-gtagtgcccctgggttcagGTCCAAGTTTGG--GGTTCCACTGAGACCTGCCCTCC--------CCAAGGTCTTCGG---CGAGGG----GGG-CCCTGCACTGAACACTGGGGAGGGGAAAGGAGGCTAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128192814 676 + 137757926 GCGCACCTGTGAGTCGAGGCAGTGGCCTTGTTTTGGGGGAGGC--TGGCTGTCTTCCAGGCTGCCCTCTTGTTGGTGATGCAGACTGTGCCTCCTAAAAATAAAAA-TTTCTGTCTTCTGCCTGGCTGGCGGACAATC-AAAA----------------------------------------------AAAATAAA--------------ACC--GAAAA--------------CTTCACTGAGAGACAACCA----------GACTCAACCTTCAGCTAAAGAGGCTAAGAA---------------------------------TATAGG-GATTTCCGTGGTTCGTTGG---TACCTGGGGCAACCAGAGGAATGAAGACTGGTTTCTTGAAGGGTTT-GAGGTGGGATTC-TTTAGGGAGG---AGTGACCACATGAAGTCCAG-GCACCCGCA-------GAGG----------GTGCAAG-----------GCCAGGT-AGAGGAATGGAagcgggtgctctgtgacgtggtgggctgggcgct---cccaacctggcctgtctcccttaatcgccacagccgtgccatgaggtaggttgcatttctgttgtgcagaaaaataaactgagactcagagaggttaagtgatctgttgagggtca-atggc--------------tTCTTGTATCAGCCCCAG----------GCTCTGTGCTTCGTCAACC-TGGGCCCC-TCTCCCAG-GTAGTGCCCCTGGGTTCAGGTCCAAGTTTGG--GGTTCCACTGAGACCTGCCCTCC--------CCAAGGTCTTCGG---CGAGGG----GGG-CCCTGCACTGAACACTGGGGAGGGGAAAGGAGGCTAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10593899 676 - 16319837 ACGCACCTGTGAGTCGAGGCAGTGGCCTTGTTTTGGGGGAGGC--TGGCTGTCTTCCAGGCTGCCCTCTTGTTGGTGATGCAGACTGTGCCTCCTAAAAATAAAAA-TTTCTGTCTTCTGCCTGGCTGGCGGACAATC-AAAA----------------------------------------------AAAATAAA--------------ACC--GAAAA--------------CTTCACCGAGAGACAACCA----------GACTCAACCTTCAGCTAAAGAGGCTAAGAA---------------------------------TATAGG-GATTTCCGTGGTTCGTTGG---TACCTGGGGCAACCAGAGGAATGAAGACTGGTTTCTTGAAGGGTTT-GAGGTGGGATTC-TTTAGGGAGG---AGTGACCACATGAAGTCCAG-GCACCCGCA-------GAGG----------GTGCAAA-----------GCCAGGT-AGAGGAATGGAAGCGGGTGCTCTGTGACGTGGTGGGCCGGGCGCT---CCCAACCTGGCCtgtctcccttaatcgccacagccgtgccatgaggtaggttgcatttctgttgtgcagaaaaataaactgagactcagagaggttaagtgatctgttgagggtca-ATGGC--------------TTCTTGTATCAGCCCCAG----------GCTCTGTGCTTCGTCAACC-TGGGCCCC-TCTCCCAG-GTAGTGCCCCTGGGTTCAGGTCCAAGTTTGG--GGTTCCACTGAGACCTGCCCTCC--------CCAAGGTCTTCGG---CGAGGG----GGG-CCCTGCACTGAACACTGGGGAGGGGAAAGGAGGCTAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12215919 676 + 20526591 GCGCACCTGTGAGTCGAGGCAGTGGCCTTGTTTTGGGGGAGGC--TGGCTGTCTTCCAGGCTGCCCTCTTGTTGGTGATGCAGACTGTGCCTCCTAAAAATAAAAA-TTTCTGTCTTCTGCCTGGCTGGCGGACAATC-AAAA----------------------------------------------AAAAAAAA--------------ACC--GAAAA--------------CTTCGCCGAGAGACAACCA----------GACTCAACCTTCAGCTAAAGAGGCTAAGAA---------------------------------TATAGG-GATTTCGGTGGTTCGTTGG---TACCTGGGGCAACCAGAGGAATGAAGACTGGTTTCTTGAAGGGTTT-GAGGTGGGATTC-TTTAGGGAGG---AGTGACCGCATGAAGTCCAG-GCACCCGCA-------GAGG----------GTGCAAA-----------GCCAGGT-AGAGGAATGGAAGCAGGTGCTCTGTGACGTGGTGGGCTGGGCACT---CCCAACCTGGCCtgtctcccttaatcgccacagccgtgccatgaggtaggttgcatttctgttgtgcagaaaaataaactgagactcagagaggttaagtgatctgttgagggtca-acggc--------------tTCTTGTATCAGCCCCAG----------GCTCTGTGCTTCATCAACC-TGGGCCCC-TCTCCCAG-GTAGTGCCCCTGGGTTCAGGTCCAAGTTTGG--GGTTCCACTGAGACCTGCCCTCC--------CCAAGGTCTTCGG---CGAGGG----GGG-CCCTGCACTGAACACTGGGGAGGGCAAAGGAGGCTAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119188387 677 + 128539186 GCGCACCTGTGAGTCGAGGCAGTGGCCTTGTTTTGGGGGAGGC--TGGCTGTCTTCCAGGCCGCCCTCTTGTTGGTGATGCAGACTGTGCCTCCTAAAAATAAAAA-TTTCTGTCCTCTGCCTGGCTGGCGGACAATC-AAAA----------------------------------------------AAAATAAA--------------ACA--GAAAA--------------CTTCACCGAGAGACAACCG----------GACTCAACCTTCAGCTAAAGAGGCTAAGAA---------------------------------TATAGG-GATTTCCATGGTTCGTTGG---TACCTGGGGCAACCAGAGGAATGAAGACTGGTTTCTTGAAGGGTTT-GAGGTGGGATTC-TTTAGGGAGG---AGTGACCACATGAAGTCCAG-GCACCCGCA-------GAGG----------GTGCACA-----------GCCCGGTGAGAAGAATGGAagcgggtgctctgtgaggtggtgggctgggcgct---cccaacctggcctgtctcccttaatcgccacagccgtgccatgaggtaggttgcatttctgttgtgcagaaaaataaactgagactcagagaggttaagtgatctgttgagggtca-acggc--------------tTCTTGTATCAGCCCCAG----------GCTCTGTGCTTCGTCAACC-TGGGCCCC-TCTCCAAG-GTAGTGCCCCTGGGTTCAGGTCCAAGTTTGG--GGTTCCACTGAGACCTGCCCTCC--------CCAAGGTCTTCGG---TGAGGG----GGG-CCCTGCACTGAACACTGGGGAGGGGAAAGGAGGCTAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 501655 675 + 6255621 GCACACCTGTGAGTCGAGGCAGTGGCCTTGTTTTGGGGGAGGC--TGGCTGTCTTCCAGGCTGCCCT-TTGTTGATGATGCAGACTGTGCCTCCTAAAAATAAAAA-TTTCTGTCCTCTGCCTGGCTGGCGGACAATC-AAAA----------------------------------------------AAAATAAA--------------ACC--AAAAA--------------CTTCACTGAGAGACAACCA----------GACTCAACCTTCAGCTAAAGAGGCTAAGAA---------------------------------TATAGG-GATTTCGGTGATTTGTTGG---TACCTGGGGCAACCAGAGGAATGAAGACTGGTTTCTTGAAGGGTTT-GAGGTGGGATTC-TTTAGGGAGG---AGTGACCACATGAAGTCCAG-GCACCCGCA-------GAGG----------GTGCAAA-----------GCCAGGT-AGAGGAATGGAagcgggtgctctgtgatgtggtgggctgggcgct---cccaacctggcctgtctcccttaatcgccacagccctgccatgaggtaggttgcatttctgttgtgcagaaaaataaactaagactcagagaggttaagtgatctgttgagggtca-atggc--------------tTCTTGTATCAGCCCCAG----------GCTCTGTGCTTCGTCAACC-TGGGCCCC-TCTCCCAG-GTAGTGCCCCTGGGTTCAGGTCCAAGTTTGG--GGTTCCACTGAGACCTGCCCTCC--------CCAAGGTCTTCGG---CGAGGG----GGG-CCCTGCACTGAACACTGGGGAGGGGAAAGGAGGCTAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4564090 673 - 8658521 GCGGACCTGTGAGTTGAGGCAGTGGCCTTGTTTTGGGGAAGGC--TGGCTGCCTTCCAGGCTGCCCTCTTGTTGGTGATGCAGACTGTGCCTCCTAAAAATAAAAA-TTTCTGTCCTTTGCCTGGCTGGCGGACAATC-AAAA----------------------------------------------AAAATAAA--------------ACA--GAAAA--------------CTTCACCGAGAGACAACCG----------GACTCAACCTTCAGCTAAAGAGGCTAAGAA---------------------------------TATAGG-GATTTCCGTGGTTCGTTGG---TACCTGGGGCAACCAGAGGAATGAAGACTGGTTTCTTGAAGGGTTT-GAGGTGGGATTC-TTTAGGGAGG---AGTGACCGCATGAAGTCCAG-GCACCCGCA-------GAGG----------GTGCAAA-----------GCCAGGTGAGAGGAATGGAAGCCAGTGCCCtgtgaggtggtgggctgggcgct---cccaacctggcctgtctcccttaatcgccacagccatgccgtgaggtaggttgcatttctgttgtgcagaaaaagaaactgagactc----aggttaagtgatctgttgagggtca-acggc--------------tTCTTGTATCAGCCCCAG----------GCTCTGTGCTTCGTCAACC-TGGGCCCC-TCTCCAAG-GTAGTGCCCCTGGGTTCAGGTCCAAGTTTGG--GGTTCCACTGAGACCTGCCCTCC--------CCAGGGTCTTCGG---CGAGGG----GGG-CCCTGCATTGAACCCTGGGGAGGGGAAAGGAGGTTAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114768838 704 + 124281992 GTGGACTTGTGAGTCAAGGCAGTGGCCCTGTTTTGGGGGAGGC--TGGCTGTCTTCCCGGCTGCGCTCTAGTTGGCAATGTAGACTGTGCCTCCTAAAAATAAAAA-CTTCTGTCCTCTGCCTGACTGGCAGATAATA-GAAatatatatacgtatatatatgtgtgtg--------------------tatatata-----------tatata--tatCT--------------CTTCACCAAGAGACAACCG----------GACTCAAACTTTGGCTACAGAGGGTAAGAA---------------------------------TATAGG-GATTTATATGGTTCATTGG---TACCCGGGGCAACCAGAGGAATGAAGACTGGTTTCTTGAGGGGTGCAGAAGTGGG-TTC-TTTAGCGGGG---AGTGACTGCACGAAGTCCAG-GCTCCCGTG-------GAGG----------GTGCAAA------GGCATGCCAGGTGCGAGGAACGGAAACTGG-Gctgtgtgaggcgctgggccaggcgct---cccaacctgtgctatctcatttaatcaccacagccgtgccacaaggtaggttgcatttctgttgtgcagaaaaagaaac--agactcagagaggttgagtgacctgttgagagtcccacagc--------------CTCTTGTATCAGCCCCAG----------GCTCTGTGCTTTGTCAACC-TTGGCCCCATCTCCAAG-GGGGTACCCCTGGGTTCAGGACCTAGTTTGG--GGTTCCACTGAGACCTGCCCTCT--------TCAAGGG-TTCAG---TGAGGG----GGG-CCCTGCATTGAACACTGGGGAGGGGAAAGGAG----- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 413149 745 - 9212255 GTGGACTTGTAAGTCATGGCAGTGGCTCTGTTTTGGGGGAGGC--TGGCTGTCTTCCCGGCTGCGCTCTACTTGGCAATGTAGACTGTGCCTCCTAAAAATAAAAA-TTTCTGTCCTCTGCCTGACTGGCGGGTAATA-AAAATATGTATACGTCTGTATATGTGTGTGTGTGTGtgtgtgtgtatgtatatatata-----------tatata--tacatacacacacataaaacttcagcaagagacaacca----------gactcaacctttggctacagagGCTAAGAA---------------------------------TATAGG-GATTTCTATGGTTCATTGG---TACCTGGGGCAACCAGAGGAATGAAGACCGGTTTCTTGAGGGGTGCAGAAGTGGGATTC-TTTAGCGGGG---AGTGACTGCATGAAGTCCAG-GCTCCCGCG-------GAGG----------GTGCAAA------GGCGTGCCAGGTGAGAGGAATGGAAACTGA-Gctgtgtgaggtagtgggccgggcgct---cccaacctgtgctatctcatttaatcaccacagccgtgccacgaggtaggttgcatttctgttgtgcagaaaaagaaactgagactcagagaggttgagtgacctgttgagggtcccacagc--------------ctctcgtatcagccccag----------gctctgtgctttgtcaact-ttggccctgtctccaag-ggggtgcccttGGGTTCGAGTCTGAGTTTGG--GGTTCCACTGAGACCTGCCCTCC--------TCAAGGG-TTCAG---TGAGGG----GGG-CCCTGCATTGAACACC-GGGAGGGAAAAGGAGACAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2827361 708 + 4466143 GTGCACTTGTGAGTCAAGGCAGTGGCCCTGTTTTGGGGGAGGC--TGGCTGTCTTCCCGGCTGCGCTCTAGTTGGCAATGTAGACTGTGACTCCTAAAAATAAAAA-TTTCTGTCCTCTGCCTGACTGGCGGATAATA-AAAATATGTATACGTCTATATATGTA------------------------TAGATACA-----------TGTATA--TAAAA--------------CTTCAGCAAGAGACAACCG----------GACTCAACCTTTGGCTACAGAGGCTAAGAA---------------------------------TATAGG-GATTTCTATGGTTCATTGG---TACCTGGGACAACCAGAGGAATGAAGACTGGTTTCTTGAGGGGTGCAGGAGTGGGATTC-TTTAGCGGGG---AGTGATTGCGTGAAGTCCAG-GCTCCTGCG-------GAGG----------GTGCAAA------GGCATGCCAGGTGAGAGGAACGGAAACTGG-Gctgtgtgaagtggtgggctgggcgct---cccaacctgtgctatctcatttaatcaccacagccatgccacgaggtaggttgcatttctgttgtgcagaaaaagaaactgagactcagagaggttgagtgacctgttgagggtcccacagc--------------CTCTTGTATCAGCTCCAG----------GCTCTGTGCTTTGTCAACC-TTGGCCCTGTCTCCAAG-GGGGTGCCTTTGGGTTCGGGTCTGAGATTGG--GGTTCCACTGAGACCTGCCCTCC--------TCAAGGG-TTCAG---TGAGGG----GGG-CCCTGCATTGAGCACCGGGGAGGGAAAAGGAGACAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1523022 704 + 5364348 GTGGACTTGTGAGTCAAGGCAGTGGCCCTATTTTTGGGGAGGC--TGGCTGTCTTCCTGGCTGCGCTCTAGTCGGCAATGTAGACTGTGCCTCCTAAAAATAAAAA-TTTCTGTCCTCTGCCTGACTGGCGGataata-aaaatg----------tatatatgtgtgtg--------------------tatatata-----------tatata--taAAA--------------CTTCACCAAGAGACAACCG----------GACTCAACCTTTGGCTACAGAGGCTAAGAA---------------------------------TATAGG-GATTTCTATGGTTCATTGGTACTACCTGGGGCAACCAGAGGAATGAAGACTGGTTTCTTGAGGGGTGCAGAAGTGGGATTC-TTTAGCGGGG---AGTGACTGCATGAAGTCCAG-GCTCCCGTG-------GAGG----------GTGCAAA------GGCATGCCAGGTGAGAGGAATGGAAACTGG-Gctgtgtgaggtggtgggccgggcgct---cccaacctgtgctatctcatttaatcaccacagccgtgccacaaggtaggttgcatttctgttgtgcagaaaaagaaactgagactcagagaggttgagtgacctgttgacggtcccacagc--------------CTCTTGTATCAG--CCAG----------GCTCTGTGCTTTGTCAACC-TTGGCCCCGTCTCCAAG-GGGGTGCCCTTGGGTTCGGGTCTGAGTTTGG--GGTTCCACTGAGACCTGCCCTCC--------TCAAGGG-TTCAG---TGAGGG----AGGCCCCTGCATTGAACACCGGGGAGGGGAAAGGAGACAGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4255513 685 + 7922563 GCGGGCTTGGGAA-CAAGACAGTGGCCCTGTTTCATGCAGAGCATCAGCTGTCTGCCGGGCTGGCCTCTTGTTGGTGATGCAGCCTATATTTCATAAAAATAGAAA-GTTCTGTCTTCTGTCTATTGGGTGGACAAGG-AAAA----------------------------------------------GAAATAAA--------------ATA--GAAGA--------------GTTCACTGAGAGACAGTCG----------GGTCTCACGTCTGTCTAAAGAGGCTGAGAATGTAGGGGTAAGGCTGTGTAAAGAGGCTGAGAGTGTAGG-GGTGTCTGCAGTTTGTTGC---TGCCTGGGGCAGCTGGAGGAACAAAGTCTGGTGTCCTGAAGACTGC-TGAGTTAGATTCATTTGGGGAGA---ACTGACCGCATGAAGTGTGGCGCCCACGCA-------GGGGTGGGATGGGAGTGGAAA-----AGATCCGACAAGAAGGAGAAATGGAAACGGGCGC-ATGCAAGGCGGT--GCTAGGTGCT----------------GTCTC----AGTCACCACAACCA----------------------------CTCAGGAAAGGAACCTGGGTCTCAGGG----TAAGTGACCTGTTG-GGGTCACACTGC--------------ACCTTATCCCAGCCCCAGCTACTGCCCAGGCTTGGGCTTTCCCAGTC-TCAGCTACTTCTCCAG------------TGGGTTCAGATCAGAGTTT-G--GGTGTCAGCGAGGCTCACCCTCCCCAGAACACCAGGGCCTTCAG---CAAGGG----GGGACTCTGTGTTTGATTTTTGGGAAGGCAAAGGAGCTAAG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33123244 662 - 38964690 GCAGGCTTGGGAGACAACATAGTGGCCTCCTTCCTCAGGGAGCATCAGCTATCTGCTGGATGGCCCTTTTGTTCCTGAGGCAGGCTGTGCCTCATAAAAATACTGT-TTTCTATCTTTTATCTGTCCAGTGGACCGGT-AAAA----------------------------------------------GAAATAAA--------------ATGGTGAAAT--------------CTTAGAGGAAAAAAAGTTGAGACAGGTGAAAGTTGGCTGTAGGCTAAAGAAATTCAAAA---------------------------------CAGGG----------TAGTTTGTGGG---TCCCTGAGGTGCCTGGAGGAATGGAGGCTGGTTTCTGGAAGGATGCTGGGGTGGGTTTC-TGTGGGAAGAGTTGGTGCTCGGGTGGGGGTGGT-GGAGCTAGA-------ATGG----------GGGCAGG-----------GACCAGTGACATGAATGAGAATCCACTTTGTGCGGAGCGTCAGACTGGGTGCTGGGGCACAGATCGATTGCCTCATTCAATCACCACAACCT----------------------------TGCAGAGAAGGAGACTCA--CTCAGAGAGGGTAGGGAGCCTGTCCAGGCTCACAGAG---------------TGCCCGCATACTCCCCAC----------GCTGCACTCCTTCCCAGCA-CCTGCTGCTTCTCGAGGTGTGCAGACTCTGGATTTGGATCACAGTTTGGCAGGGGC-----AAAGCTCATCACC--------TAGGACCCTTAGG---CGAGAACCACAAG-GACAACATTTGAGGCCTGGAAACAGACGGGAGTCAAA i canFam3.chr26 I 42 C 0 s dasNov3.JH568189 795664 685 - 1116856 ----ACCTGGAGAACAAGGCA-TGGCCTCCTTTCTGGGGAAGCATCACCTGTCTGCTAGGCTGCCTTCC--TCACTGAGGCAGCCTATACCTCATAAAAATAAATT-TTCCTATCCTCTATCTAGCCGATGGACACCT-AAAA----------------------------------------------GAAATAAAATAATAAGATCTTAATA--GAAAA--------------GTTCA-CGAGAGGCAATGA---------AGGCTCAACTTTAGGCTAAAGAGACTAAAAA--------------------------------ATATAGGAGATTCCTACAGTTTGTTGG---TACCTGGGACAGCTGGA------------GGTTTCTTAAAGGAAGCGGAGGTGGAATTC-TTTAGGACAA---GTTAACCCCATTAAGTCCAG-GTACCCGGGTCAGTGTGGAG----------GTGGGAACAAGAAGGGATGGCaactagcattgatgaaaatctgctttgtgtgaagtattgggccta--------tcttaggtagatcgtctcatttaatctccaccaccatgctgcaaggtaggttgtatccctgtcttgtagaaaaggaaactgggactcagagaagctaagtaacctgtggagggtcatactgcgattatgtggcagattgtcagatcaagtccag----------gCTACACTTTTTGCCTGTCATCAGCCCCTTCTCAAGT-GTCGAGACCCCTGGTTCAGATCAGAGTGGGG--ATGTCAGCCAAGACATGCCCTGC--------CCA--------GA---AGATGG----AAG-CCTTATAC--------------AAAAAAGGACACCAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9432601 904 - 31815103 I e mm10.chr5 124777974 1082 + 151834684 I e proCoq1.NW_012154285v1 6687070 836 - 9870158 I a score=372421.000000 s hg38.chr12_KI270834v1_alt 24255 34 + 119498 TGGTGTTGTCAGCCTCATACCATGAAAATGAATC s panTro5.chr12 127310444 34 + 137163284 TGGTGTTGTCAGCCTCATACCATGAAAATGAATC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661374 34 + 135337776 TGGTGTTGTCAGCCTCATACCATGAAAATGAATC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8174304 34 - 8369578 TGGTGTTGTCAGCCTCACATCATGAAAATGAATT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97822643 34 + 106955855 TGGTGTCGTCCGCCTCATACCATGAAAACGAATT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123945974 34 + 133663169 TGATGTCATCCGCCTCCTACCATGAAAATGAATC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128193490 34 + 137757926 TGATGTCATCCGCCTCCTACCACGAAAATGAATC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10594575 34 - 16319837 TGATGTCATCCGCCTCCTACCACGAAAATGAATC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12216595 34 + 20526591 TGGTGTCATCCACCTCCTACCGTGAAAATGAATC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189064 34 + 128539186 TGGTGTCATCCGCCTCCTACCACGAAAATGAATC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 502330 34 + 6255621 TGATGTCATCCGCCTCCTACCACGAAAATGAATC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4564763 34 - 8658521 TGGTGTCAACCGCCTCCTACCACGAAAATGAATC i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 413894 34 - 9212255 TGGTGTCATCCGCCTTGTACCATGAAAACGAATC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2828069 34 + 4466143 TGGTGTCATCTGCCTCGTACCATGAAAATGAATC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1523726 34 + 5364348 TGGGGTCATCTGCCTCGTACCATGAAAATGAATC i aotNan1.NW_018491581v1 C 0 I 6 s proCoq1.NW_012154285v1 6687906 34 - 9870158 TGGTGTCGTCCGCCTCGTACCATGAAAATGAATC i proCoq1.NW_012154285v1 I 836 C 0 s otoGar3.GL873618 4256198 34 + 7922563 TGGCATCATCTGGCTCATATTATAAAAATGAATC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33123906 34 - 38964690 GGGTGGTGTCTTCCTTGTACCATGAAGATGAACA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 796349 21 - 1116856 TGGTGCTGTCAGCCTCATACC------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9432601 904 - 31815103 I e mm10.chr5 124777974 1082 + 151834684 I e calJac3.chr9 114769542 0 + 124281992 C a score=31565.000000 s hg38.chr12_KI270834v1_alt 24289 8 + 119498 GCCACGCA-- s panTro5.chr12 127310478 8 + 137163284 GCCACGCA-- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661408 8 + 135337776 GCCACGCA-- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8174338 8 - 8369578 GCCACGCA-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97822677 8 + 106955855 GCCACGCC-- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123946008 8 + 133663169 CCCACGCG-- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128193524 8 + 137757926 CCCACGCG-- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10594609 8 - 16319837 CCCACGCG-- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12216629 8 + 20526591 CCCACGCG-- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189098 8 + 128539186 CCCACGCG-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 502364 8 + 6255621 CCCACGCG-- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4564797 8 - 8658521 CCCACGTG-- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114769542 2 + 124281992 -----AT--- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 413928 6 - 9212255 -CCACAC--- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2828103 6 + 4466143 -CCACAC--- i cebCap1.NW_016107484v1 C 0 C 0 s proCoq1.NW_012154285v1 6687940 8 - 9870158 TCCACGCG-- i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4256232 8 + 7922563 TCCACGTA-- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33123940 8 - 38964690 GCCCCGTG-- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 796370 6 - 1116856 ----CGTCTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9432601 904 - 31815103 I e mm10.chr5 124777974 1082 + 151834684 I e aotNan1.NW_018491581v1 1523760 6 + 5364348 I a score=137817.000000 s hg38.chr12_KI270834v1_alt 24297 16 + 119498 GCTCGCCGCAGGCCCC s panTro5.chr12 127310486 16 + 137163284 GCTCGCCGCTGGCCCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661416 16 + 135337776 GCTCGCCGCTGGCCCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8174346 16 - 8369578 GCTCGCCGCAGGCCCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97822685 16 + 106955855 GCTCGCAGCAGCCCTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123946016 15 + 133663169 GCTCACTGCAGG-CTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128193532 15 + 137757926 GCTCACTGCAGG-CTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10594617 15 - 16319837 GCTCACTGCAGG-CTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12216637 15 + 20526591 GCTCACTGCAGG-CTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189106 16 + 128539186 GCTCACTGCAGGCCTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 502372 15 + 6255621 GCTCACTGCAGG-CTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4564805 16 - 8658521 GCTCACTGCAGGCCTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114769544 16 + 124281992 GCTCGCCACAGGCCTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 413934 16 - 9212255 GCTCGCTGCAGGCCTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2828109 16 + 4466143 GCTCGCCGCAGGCCGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1523766 16 + 5364348 GCTCGCTGCAGGCCTT i aotNan1.NW_018491581v1 I 6 C 0 s proCoq1.NW_012154285v1 6687948 16 - 9870158 GCTCACCCAAGGCCCC i proCoq1.NW_012154285v1 C 0 I 34 s otoGar3.GL873618 4256240 16 + 7922563 GCTCGCCCAAGGCCTC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33123948 14 - 38964690 GCTCTCTCTGTCCC-- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 796376 15 - 1116856 GCTCGCC-CTGGCCTC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9432601 904 - 31815103 I e mm10.chr5 124777974 1082 + 151834684 I a score=343002.000000 s hg38.chr12_KI270834v1_alt 24313 39 + 119498 CTTTCCA-AGGGGCTGGCCGGCCGGGCCACCTAACTGCTT s panTro5.chr12 127310502 39 + 137163284 CTTTCCA-AGGGGCTGGCCGGCCGGGCCACCTAACTGCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661432 39 + 135337776 CTTTCCA-AGGGGCTGGCCGGCCGGGCCACCTAACTGCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8174362 39 - 8369578 CTTTCCA-GGGGGCTGGCCGGCCGGGCCACCTAACTGCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97822701 39 + 106955855 CTTTCCA-GGGGGCTGGCCGGCCGGGCCACCTAACTGCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123946031 38 + 133663169 CTTTCCA--GGGGCGGGCCGGCCGGGCCACCTAACTGCTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128193547 38 + 137757926 CTTTCCA--GGGGCGGGCCGGCCGGGCCACCTAACTGCTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10594632 38 - 16319837 CTTTCCA--GGGGCGGGCCGGCCGGGCCACCTAACTGCTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12216652 35 + 20526591 CTTTCCA--GGGGCGGGCCGGCCGGGCCTCCTAA---CTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189122 39 + 128539186 CTTTCCA-GGGGGCGGGCCGGCCGGGCCACCTAACTGCTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 502387 38 + 6255621 CTTTCCA--GGGGCGGGCCGGCCGGGCCACCTAACTGCTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4564821 39 - 8658521 CTTTCCC-GGGGGCAGGCCGGCTGGGCCACCTAACTGCTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114769560 35 + 124281992 CTTTCCA---GGGCGGGCCGGCCGGGTCACCTAACTGC-- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 413950 35 - 9212255 CTTTCCA---GGGCGGGCTGGCCAGGTCACCTAACTGC-- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2828125 37 + 4466143 CTTTCCA---GGGCGGGCCGGCTGGGTTACCTAACTGCtt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1523782 37 + 5364348 CTTTCCA---GGGTGGGCCGGCCGGGTCACTTAACTGCTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4256256 35 + 7922563 CTCGCTC-TGGAGTG----GGCTAGGCCACATGACCGCCT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33123962 30 - 38964690 TTTCCCT-GGTGGTGGGCCTGCTGG----CCTCAT----- i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 796391 36 - 1116856 CTTTCCCCTGAGCTGGGCTGGACAGACCTCATAACC---- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9432601 904 - 31815103 I e mm10.chr5 124777974 1082 + 151834684 I e proCoq1.NW_012154285v1 6687964 34 - 9870158 I a score=8302.000000 s hg38.chr12_KI270834v1_alt 24352 4 + 119498 CTTT s panTro5.chr12 127310541 4 + 137163284 CTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661471 4 + 135337776 CTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8174401 4 - 8369578 CTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97822740 4 + 106955855 CTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123946069 4 + 133663169 CTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128193585 4 + 137757926 CTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10594670 4 - 16319837 CTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12216687 4 + 20526591 CTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189161 2 + 128539186 CT-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 502425 4 + 6255621 CTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4564860 4 - 8658521 CTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114769595 2 + 124281992 --TT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 413985 2 - 9212255 --TC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2828162 4 + 4466143 cttt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1523819 4 + 5364348 CTTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4256291 1 + 7922563 C--- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124779056 4 + 151834684 CTCC i mm10.chr5 I 1082 C 0 s canFam3.chr26 33123993 3 - 38964690 CCC- i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 796427 2 - 1116856 CT-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9432601 904 - 31815103 I e proCoq1.NW_012154285v1 6687964 34 - 9870158 I a score=42761.000000 s hg38.chr12_KI270834v1_alt 24356 4 + 119498 CTTT s panTro5.chr12 127310545 4 + 137163284 CTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661475 4 + 135337776 CTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8174405 4 - 8369578 CTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97822744 4 + 106955855 TGTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123946073 4 + 133663169 CTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128193589 4 + 137757926 CTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10594674 4 - 16319837 CTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12216691 4 + 20526591 CTTT i cerAty1.NW_012001186v1 C 0 C 0 s manLeu1.NW_012103587v1 502429 4 + 6255621 CTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4564864 4 - 8658521 CTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114769597 4 + 124281992 CTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 413987 4 - 9212255 CTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2828166 4 + 4466143 cttt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1523823 4 + 5364348 CTTT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6687998 4 - 9870158 CTTT i proCoq1.NW_012154285v1 I 34 C 0 s mm10.chr5 124779060 4 + 151834684 CTGC i mm10.chr5 C 0 C 0 s canFam3.chr26 33123996 4 - 38964690 CATT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 796429 4 - 1116856 CCTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9432601 904 - 31815103 I e otoGar3.GL873618 4256292 0 + 7922563 C e chlSab2.chr11 119189163 0 + 128539186 C a score=4149778.000000 s hg38.chr12_KI270834v1_alt 24360 210 + 119498 CTTCCTTCTTGCCCTCCAGTTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCCGGCTACGCAGGCCGCACGGAGCTGCCCGAGTCGGTGAAGGCGCTGTTCAGGCCTGTGGTCGTGATCGTGCCCGACCTGCAGCAGATCTGTGAGATCATGCTCTTCTCTGAGGGCTTCCTGGAGGCCAAGGT s panTro5.chr12 127310549 210 + 137163284 CTTCCTTCTTGCCCTCCAGTTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCCGGCTACGCAGGCCGCACGGAGCTGCCCGAGTCGGTGAAGGCGCTGTTCAGGCCTGTGGTCGTGATCGTGCCCGACCTGCAGCAGATCTGTGAGATCATGCTCTTCTCTGAGGGCTTCCTGGAGGCCAAGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661479 210 + 135337776 CTTCCTTCTTGCCCTCCAGTTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCCGGCTACGCAGGCCGCACGGAGCTGCCCGAGTCGGTGAAGGCGCTGTTCAGGCCTGTGGTCGTGATCGTGCCCGACCTGCAGCAGATCTGTGAGATCATGCTCTTCTCTGAGGGCTTCCTGGAGGCCAAGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8174409 210 - 8369578 CTTCCTTCTTGCCCTCCAGTTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCCGGCTACGCAGGCCGCACGGAGCTGCCCGAGTCGGTGAAGGTGCTGTTCAGGCCCGTGGTCGTGATCGTGCCTGACCTGCAGCAGATCTGTGAGATCATGCTCTTCTCTGAGGGCTTCCTGGAGGCCAAGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97822748 210 + 106955855 CTTCCTTCTTGCTCTCCAGTTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCCGGCTACGCAGGCCGCACGGAGCTGCCCGAGTCGGTGAAGGCGCTGTTCAGGCCTGTGGTCGTGATCGTGCCCGACCTGCAGCAGATCTGCGAGATCATGCTCTTCTCCGAGGGCTTCCTGGAGGCCAAGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123946077 210 + 133663169 CTTCCTTCTTGCTCTCCAGTTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCCGGCTACGCGGGCCGCACGGAGCTGCCTGAGTCAGTGAAGGCGCTGTTCAGGCCCGTGGTCGTGATCGTGCCCGACATGCAGCAGATCTGCGAGATCATGCTCTTCTCCGAGGGCTTCCTGGGGGCCAAGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128193593 210 + 137757926 CTTCCTTCTTGCTCTCCAGTTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCCGGCTACGCGGGCCGCACGGAGCTGCCTGAGTCAGTGAAGGCGCTGTTCAGGCCCGTGGTCGTGATCGTGCCCGACATGCAGCAGATCTGCGAGATCATGCTCTTCTCCGAGGGCTTCCTGGGGGCCAAGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10594678 210 - 16319837 CTTCCTTCTTGCTCTCCAGTTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCTGGCTACGCGGGCCGCACGGAGCTGCCTGAGTCAGTGAAGGCGCTGTTCAGGCCCGTGGTCGTGATCGTGCCCGACATGCAGCAGATCTGCGAGATCATGCTCTTCTCCGAGGGCTTCCTGGGGGCCAAGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12216695 210 + 20526591 CTTCCTTCTTGCTCTCCAGTTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCCGGCTACGCGGGCCGCACGGAGCTGCCCGAGTCAGTGAAGGCGCTGTTCAGGCCCGTGGTCGTGATCGTGCCCGACCTGCAGCAGATCTGCGAGATCATGCTCTTCTCCGAGGGCTTCCTGGGGGCCAAGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189163 209 + 128539186 -TTCCTTCTTGCTCTCCAGTTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCCGGCTACGCGGGCCGCACGGAGCTGCCCGAGTCAGTGAAGGCGCTGTTCAGGCCCGTGGTCGTGATCGTGCCCGACATGCAGCAGATCTGCGAGATCATGCTCTTCTCTGAGGGCTTCCTGGGGGCCAAGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 502433 210 + 6255621 CTTCCTTCTTGCTCTCCAGTTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCCGGCTACGCGGGCCGCACGGAGCTGCCCGAGTCAGTGAAGGCGCTGTTCAGGCCCGTGGTCGTGATCGTGCCCGACCTGCAGCAGATCTGCGAGATCATGCTCTTCTCCGAGGGCTTCCTGGGGGCCAAGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4564868 210 - 8658521 CTTCCTTCTTGCCCTCCAGTTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCCGGCTACGCGGGCCGCACGGAGCTGCCCGAGTCAGTGAAGGCGCTGTTCAGGCCCGTGGTCGTGATCGTGCCCGACCTGCAGCAGATCTGCGAGATCATGCTCTTCTCCGAGGGCTTCCTGGGGGCCAAGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114769601 210 + 124281992 CTTCCTTCTCGTCCTCCAGTTTGAAGGGCAGGAGATCACCCTGGACTCTCGCATGGGCATCTTCATCACCATGAACCCTGGCTACGCAGGCCGCACAGAGCTGCCTGAGTCGGTGAAGGCGCTGTTCAGGCCGGTGGTCGTGATTGTGCCTGACCTGCAGCAGATCTGCGAGATCATGCTCTTCTCCGAGGGCTTCCTGGGGGCTAAGGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 413991 210 - 9212255 CTTCCTTCTCATCCTCCAGTTTGAAGGGCAGGAGATCACCCTGGACTCTCGCATGGGCATCTTCATCACCATGAACCCGGGCTACGCAGGCCGCACAGAGCTGCCCGAGTCGGTGAAGGCGCTGTTCAGGCCCGTGGTTGTGATCGTGCCTGACCTGCAGCAGATCTGCGAGATCATGCTTTTCTCCGAGGGCTTCCTGGGGGCCAAGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2828170 210 + 4466143 ctttcttcttGTCCTCCAGTTTGAAGGGCAGGAGATCACCCTGGACTCTCGCATGGGCATCTTCATCACCATGAACCCTGGCTACGCAGGCCGCACAGAGCTGCCCGAGTCGGTGAAGGCACTGTTCAGGCCCGTGGTCGTGATCGTGCCTGACCTGCAGCAGATCTGCGAGATCATGCTCTTCTCCGAGGGCTTCCTGGGGGCCAAGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1523827 210 + 5364348 CTTCCTTCTCATCCTCCAGTTTGAAGGGCAGGAGATCACCCTGGACTCTCGCATGGGCATCTTCATCACCATGAACCCTGGCTACGCAGGCCGCACAGAGCTGCCCGAGTCAGTGAAGGCTCTGTTCAGGCCGGTGGTCGTGATCGTGCCTGACCTGCAGCAGATCTGCGAGATCATGCTCTTCTCCGAGGGCTTCCTGGGGGCCAAGGT i aotNan1.NW_018491581v1 C 0 I 34 s micMur3.chr21 9433505 210 - 31815103 CTTTCTTCCTGTCCTGCAGTTTGAAGGGCAGGAGATCGCGCTGGACTCCCGGATGGGCATCTTCATCACCATGAACCCCGGCTACGCGGGCCGCACGGAGCTGCCCGAGTCGGTGAAGGCCCTGTTCAGGCCGGTGGTGGTGATCGTGCCGGACCTGCAGCAGATCTGCGAGATCATGCTCTTCTCCGAGGGCTTCCTCGGGGCCAAGGT i micMur3.chr21 I 904 C 0 s proCoq1.NW_012154285v1 6688002 210 - 9870158 CTTTCTTCTTGTCCTGCAGTTCGAAGGGCAGGAGATCACGCTGGACTCGCGAATGGGCATCTTCATCACCATGAACCCCGGCTACGCGGGCCGCACGGAGCTGCCCGAGTCGGTGAAGGCCCTGTTCAGGCCGGTGGTGGTGATCGTGCCTGACCTGCAGCAGATCTGCGAGATCATGCTCTTCTCCGAGGGCTTCCTCTGGGCCAAGGT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4256292 210 + 7922563 CTTTGTTCTTGTCCGGCAGTTTGAAGGGCAGGAGATCTCCCTGGACTCCCGAATGGGCATCTTCATCACCATGAACCCTGGCTACGCGGGCCGCACGGAGCTGCCTGAGTCGGTGAAGGCCCTGTTCAGGCCCGTGGTCGTGATCGTGCCTGACCTGCAGCAGATCTGTGAGATCATGCTCTTCTCCGAGGGCTTCCTCGGGGCCAAGGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124779064 210 + 151834684 TTTCTCTCCTGCCACCCAGTTCGAAGGGCAGGAGATCTCCCTTGACTCTCGGATGGGCATCTTCATCACCATGAACCCGGGCTATGCGGGCCGCACGGAGCTGCCTGAGTCTGTGAAGGCGCTGTTCAGGCCTGTGGTTGTCATTGTGCCCGACCTGCAGCAGATCTGTGAGATCATGCTTTTCTCTGAGGGCTTCCTGGGCGCCAAGGT i mm10.chr5 C 0 C 0 s canFam3.chr26 33124000 210 - 38964690 CTTTCCTGTCGCCCTCCAGTTTGAAGGGCAGGAGATCGCCCTGGACTCGAGGATGGGCATCTTCATCACCATGAACCCGGGCTACGCGGGCCGCACGGAGCTGCCTGAGTCAGTGAAGGCTCTCTTCAGGCCCGTGGTGGTGATCGTGCCTGACCTGCAGCAGATCTGTGAGATCATGCTCTTCTCCGAGGGCTTCCTCTGGGCCAAGGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 796433 209 - 1116856 TTCCCCCCTTGCTC-CCAGTTCGAAGGGCAGGAGATCACCCTGGACTCACGCATGGGCATTTTCATCACCATGAACCCGGGCTATGCCGGCCGCACGGAGCTGCCCGAGTCGGTGAAGGCCCTCTTCAGGCCGGTGGTGGTCATCGTGCCGGACCTGCAGCAGATCTGCGAGATCATGCTCTTCTCCGAGGGCTTCCTGTGGGCCAAGGT i dasNov3.JH568189 C 0 C 0 a score=15976.000000 s hg38.chr12_KI270834v1_alt 24570 3 + 119498 GGG s panTro5.chr12 127310759 3 + 137163284 GGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661689 3 + 135337776 GGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8174619 3 - 8369578 GGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97822958 1 + 106955855 --G i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123946287 1 + 133663169 --G i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128193803 1 + 137757926 --G i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10594888 1 - 16319837 --G i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12216905 1 + 20526591 --G i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189372 1 + 128539186 --G i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 502643 1 + 6255621 --G i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565078 1 - 8658521 --G i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114769811 1 + 124281992 --G i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 414201 1 - 9212255 --G i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2828380 1 + 4466143 --G i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9433715 1 - 31815103 --G i micMur3.chr21 C 0 I 619 s proCoq1.NW_012154285v1 6688212 1 - 9870158 --G i proCoq1.NW_012154285v1 C 0 I 652 s otoGar3.GL873618 4256502 1 + 7922563 --G i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124779274 3 + 151834684 GAG i mm10.chr5 C 0 I 8 s canFam3.chr26 33124210 1 - 38964690 --G i canFam3.chr26 C 0 C 0 e dasNov3.JH568189 796642 0 - 1116856 C e aotNan1.NW_018491581v1 1524037 34 + 5364348 I a score=146602.000000 s hg38.chr12_KI270834v1_alt 24573 19 + 119498 GGGCCTTGGCAGCGCCAGG s panTro5.chr12 127310762 19 + 137163284 GGGCCTTGGCAGCGCCAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661692 19 + 135337776 GGGCCTTGGCAGCGCCAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8174622 19 - 8369578 GGGCCTTGGCAGCGCCAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97822959 19 + 106955855 GGGCCTCGGCAGCACCAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123946288 19 + 133663169 GGGCCTCGGCAGTGCCAGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128193804 19 + 137757926 GGGCCTCGGCAGTGCCAGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10594889 19 - 16319837 GGGCCTCGGCAGTGCCAGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12216906 19 + 20526591 GGGCCTCGGCAGTGCCAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189373 19 + 128539186 GGGCCTTGGCAGTGCCAGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 502644 19 + 6255621 GGGCCTCGGCAGTGCCAGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565079 19 - 8658521 GGGCCTCGGCAGCACCAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114769812 18 + 124281992 GGG-CATGGCAGCGCTGGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 414202 19 - 9212255 GGGCCGTGGCAGCACTGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2828381 19 + 4466143 GGGCCACGGCAGCGCTGGG i cebCap1.NW_016107484v1 C 0 I 14 s mm10.chr5 124779285 14 + 151834684 -----CGGCCAGCTGCAGG i mm10.chr5 I 8 C 0 s canFam3.chr26 33124211 19 - 38964690 ATGTCTTGTTGGAGCCCTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 796642 14 - 1116856 GGGCCTCGGCCGCG----- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e otoGar3.GL873618 4256503 0 + 7922563 C e aotNan1.NW_018491581v1 1524037 34 + 5364348 I a score=59155.000000 s hg38.chr12_KI270834v1_alt 24592 16 + 119498 TCGTGCAGTGC--AGACT s panTro5.chr12 127310781 16 + 137163284 TCGTGCAGTGC--AGACT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661711 16 + 135337776 TCGTGCAGTGC--AGACT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8174641 16 - 8369578 TCGTGCAGTGC--AGACT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97822978 16 + 106955855 CCGTGCAGTGC--AGACT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123946307 16 + 133663169 CCACACAGTGC--AGACT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128193823 16 + 137757926 CCACACAGTGC--AGACT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10594908 16 - 16319837 CCACACAGTGC--AGACT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12216925 16 + 20526591 TCGTGCAGTAC--AGACT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189392 16 + 128539186 CCGCGCAGTGC--AGACT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 502663 16 + 6255621 CCACGCAGTGC--AGGCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565098 16 - 8658521 CCGCGCAGTGC--AGACT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114769830 14 + 124281992 -CTTGGCGGGC--ACAT- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 414221 14 - 9212255 -CTCGGCGGGC--ACAC- i saiBol1.JH378194 C 0 C 0 s mm10.chr5 124779299 16 + 151834684 CTGTGTTTTGT--GAAct i mm10.chr5 C 0 C 0 s canFam3.chr26 33124230 18 - 38964690 CTCAGCCGTCCTGGGACC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 796656 2 - 1116856 ----------------CT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e otoGar3.GL873618 4256503 0 + 7922563 C e aotNan1.NW_018491581v1 1524037 34 + 5364348 I e cebCap1.NW_016107484v1 2828400 14 + 4466143 I a score=157254.000000 s hg38.chr12_KI270834v1_alt 24608 13 + 119498 TCACCC-GGGTCTG s panTro5.chr12 127310797 13 + 137163284 TCACCC-GGGTCTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661727 13 + 135337776 TCACCC-GGGTCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8174657 13 - 8369578 TCACCA-GGGTCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97822994 13 + 106955855 TCACCT-GGGTCTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123946323 13 + 133663169 TCACCC-GGGTCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128193839 13 + 137757926 TCACCC-GGGTCTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10594924 13 - 16319837 TCACCC-GGGTCTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12216941 13 + 20526591 TCACCC-GGATCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189408 13 + 128539186 TCACCC-GGGTCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 502679 13 + 6255621 TCACCC-GGATCTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565114 13 - 8658521 TCACCC-GGGTCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114769844 13 + 124281992 TTACCC-AGGTCTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 414235 13 - 9212255 TCACCC-GGGTCTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2828414 13 + 4466143 TCACCT-GGGTCTG i cebCap1.NW_016107484v1 I 14 C 0 s aotNan1.NW_018491581v1 1524071 13 + 5364348 TCACCC-GGGTCTG i aotNan1.NW_018491581v1 I 34 C 0 s otoGar3.GL873618 4256503 7 + 7922563 -------GGGTCTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124779315 13 + 151834684 gcccct-gcccctg i mm10.chr5 C 0 C 0 s canFam3.chr26 33124248 14 - 38964690 CCACCCTGCCTCTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 796658 13 - 1116856 TCCCCA-AACTCTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I a score=60768.000000 s hg38.chr12_KI270834v1_alt 24621 4 + 119498 CTTC s panTro5.chr12 127310810 4 + 137163284 CTTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661740 4 + 135337776 CTTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8174670 4 - 8369578 CTTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97823007 4 + 106955855 CTTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123946336 4 + 133663169 CTTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128193852 4 + 137757926 CTTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10594937 4 - 16319837 CTTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12216954 4 + 20526591 CTTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189421 4 + 128539186 CTTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 502692 4 + 6255621 CTTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565127 4 - 8658521 CTTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114769857 4 + 124281992 CTTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 414248 4 - 9212255 CTTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2828427 4 + 4466143 CTTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1524084 4 + 5364348 CTTC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4256510 4 + 7922563 CTTC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124779328 4 + 151834684 ctcc i mm10.chr5 C 0 I 2765 s canFam3.chr26 33124262 4 - 38964690 CTTT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C a score=153858.000000 s hg38.chr12_KI270834v1_alt 24625 13 + 119498 CAGACTGGGGACC s panTro5.chr12 127310814 13 + 137163284 CAGACTGGGGATC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661744 13 + 135337776 CAGACTGGGGATC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8174674 13 - 8369578 CAGACTGGGGACC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97823011 13 + 106955855 CAGACTGGGGACC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123946340 13 + 133663169 CAGACTGGGGACC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128193856 13 + 137757926 CAGACTGGGGACC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10594941 13 - 16319837 CAGACTGGGGACC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12216958 13 + 20526591 CAGACTGGGGACC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189425 13 + 128539186 CAGACTGGGGACC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 502696 13 + 6255621 CAGACTGGGGACC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565131 13 - 8658521 CAGACTGGGGACC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114769861 13 + 124281992 CAGACTGGGGGCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 414252 13 - 9212255 CAGACTGGGGACC i saiBol1.JH378194 C 0 M 7043 s cebCap1.NW_016107484v1 2828431 13 + 4466143 CAGACTGGGGGCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1524088 13 + 5364348 CAGACTGGGGACC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4256514 13 + 7922563 CAGACTGGGCACT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33124266 5 - 38964690 CAGGC-------- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C a score=285655.000000 s hg38.chr12_KI270834v1_alt 24638 34 + 119498 TAGGACGCGTTAGCTCCGTGTGGCTCTTCCAGAC s panTro5.chr12 127310827 34 + 137163284 TAGGACGCGTTAGCTCCGTGTGGCTCTTCCAGAC i panTro5.chr12 C 0 I 128 s panPan2.chr12 125661757 34 + 135337776 TAGGACGCGTTAGCTCCGTGTGGCTCTTCCAGAC i panPan2.chr12 C 0 I 44 s gorGor5.CYUI01015152v1 8174687 34 - 8369578 TAGGACGCGTTAGCTCCGTGTGTCTCTTCCAGAC i gorGor5.CYUI01015152v1 C 0 I 126 s nomLeu3.chr10 97823024 34 + 106955855 TAGGATGCGTGAGCTCTGTGTGGCTCTTCCAGAC i nomLeu3.chr10 C 0 T 40 s rheMac8.chr11 123946353 34 + 133663169 TAGGATGTGTTAGTTCCATGCGGCTCTTCCAGAC i rheMac8.chr11 C 0 I 870 s macFas5.chr11 128193869 34 + 137757926 TAGGACGTGTTAGTTCCATGTGGCTCTTCCAGAC i macFas5.chr11 C 0 I 954 s macNem1.NW_012010578v1 10594954 34 - 16319837 TAGGACGTGTTAGTTCCATGCGGCTCTTCCAGAC i macNem1.NW_012010578v1 C 0 I 231 s cerAty1.NW_012001186v1 12216971 34 + 20526591 TAGGACGTGTTAGTTCCATGCGGCTCTTCCAGAC i cerAty1.NW_012001186v1 C 0 I 128 s chlSab2.chr11 119189438 34 + 128539186 TAGGACGTGTTAGTTCCATGCAGCTCTTCCAGAC i chlSab2.chr11 C 0 I 44 s manLeu1.NW_012103587v1 502709 34 + 6255621 TAGGACGTGTTAGTTCCATGCGGCTCTTCCAGAC i manLeu1.NW_012103587v1 C 0 I 44 s colAng1.NW_012116043v1 4565144 34 - 8658521 TAGGACGAGTTAGTTCCATGTGGCTCTTCCAGAC i colAng1.NW_012116043v1 C 0 I 44 s calJac3.chr9 114769874 34 + 124281992 TAGGACACACTAGCTCCATGCGGCTCTTCCAGAC i calJac3.chr9 C 0 I 2 s cebCap1.NW_016107484v1 2828444 34 + 4466143 TAGGACGTGTTAGCTCCGTGCGGCTCTTCCGGAC i cebCap1.NW_016107484v1 C 0 I 28 s aotNan1.NW_018491581v1 1524101 33 + 5364348 -AGGACTCACTAGCTCTGTGTGGCTTTTCCAGAC i aotNan1.NW_018491581v1 C 0 I 2 s otoGar3.GL873618 4256527 25 + 7922563 TAGGACGC-TGGGCTCGGTGGGGCTC-------- i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C e canFam3.chr26 33124271 0 - 38964690 C e saiBol1.JH378194 414265 7043 - 9212255 M a score=210186.000000 s hg38.chr12_KI270834v1_alt 24672 37 + 119498 GGGACCTAGGATGTG------------------------------------------TCAGCTCCATGTGGC------------TCTTCCA s panTro5.chr12 127310989 37 + 137163284 GGGACCTAGGACGTG------------------------------------------TTAGCTCCATGTGGC------------TCTTCCA i panTro5.chr12 I 128 C 0 s panPan2.chr12 125661835 37 + 135337776 GGGACCTAGGACGTG------------------------------------------TTAGCTCCATGTGGC------------TCTTCCA i panPan2.chr12 I 44 C 0 s gorGor5.CYUI01015152v1 8174847 37 - 8369578 GGGACCTAGGATGTG------------------------------------------TCAGCTCCATGTGGC------------TCTTCCA i gorGor5.CYUI01015152v1 I 126 C 0 s nomLeu3.chr10 97823018 37 + 106955855 GGGACCTAGGATGCG------------------------------------------TGAGCTCTGTGTGGC------------TCTTCCA i nomLeu3.chr10 T 40 C 0 s rheMac8.chr11 123947257 37 + 133663169 GGGACCTAGGACGCG------------------------------------------TTAGCTCCATGTGGC------------TCTTCCA i rheMac8.chr11 I 870 C 0 s macFas5.chr11 128194857 37 + 137757926 GGGACCTAGGACGCG------------------------------------------TTAGCTCCGTGTGGC------------TCTTCCA i macFas5.chr11 I 954 C 0 s macNem1.NW_012010578v1 10595219 79 - 16319837 GGGACCTAGGACGTGTTAACTCCATGTGGCTCTTCCAGACTGGAGATGTAGGACACCTTAGCTCCATGTGGC------------TCTTCCA i macNem1.NW_012010578v1 I 231 C 0 s cerAty1.NW_012001186v1 12217133 37 + 20526591 GGGACCTAGGACGTG------------------------------------------TTAACTCCATGTGGC------------TCTTCCA i cerAty1.NW_012001186v1 I 128 C 0 s chlSab2.chr11 119189516 37 + 128539186 GGGACCTAGGACGCG------------------------------------------TTAGCTCCGTGTGGC------------TCTTCCA i chlSab2.chr11 I 44 C 0 s manLeu1.NW_012103587v1 502787 49 + 6255621 GGGACCTAGGACACG------------------------------------------TTAGCTCAGTGTGGCTCTTCCAGACTGGGGCCTA i manLeu1.NW_012103587v1 I 44 C 0 s colAng1.NW_012116043v1 4565222 37 - 8658521 GGGACCTAGGACAAG------------------------------------------TTAGCTCTGTGTGAC------------TCTTCCA i colAng1.NW_012116043v1 I 44 C 0 s calJac3.chr9 114769910 37 + 124281992 GGGACCGAGGATGCG------------------------------------------TTAGCTCTGTGCGGC------------TCTTCCA i calJac3.chr9 I 2 C 0 s aotNan1.NW_018491581v1 1524136 37 + 5364348 GGGACCTAGGACTTG------------------------------------------CTAGCTCTGTGCGGC------------TTTTCCA i aotNan1.NW_018491581v1 I 2 C 0 s otoGar3.GL873618 4256552 6 + 7922563 -------------------------------------------------------------------------------------CTTACA i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C e canFam3.chr26 33124271 0 - 38964690 C e cebCap1.NW_016107484v1 2828478 28 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=14925.000000 s hg38.chr12_KI270834v1_alt 24709 3 + 119498 GAT s panTro5.chr12 127311026 3 + 137163284 GAC i panTro5.chr12 C 0 I 2 s panPan2.chr12 125661872 3 + 135337776 GAC i panPan2.chr12 C 0 I 2 s gorGor5.CYUI01015152v1 8174884 3 - 8369578 GAC i gorGor5.CYUI01015152v1 C 0 I 42 s nomLeu3.chr10 97823055 3 + 106955855 GAC i nomLeu3.chr10 C 0 T 40 s rheMac8.chr11 123947294 3 + 133663169 GAC i rheMac8.chr11 C 0 I 2 s macFas5.chr11 128194894 3 + 137757926 GAC i macFas5.chr11 C 0 I 2 s macNem1.NW_012010578v1 10595298 3 - 16319837 GAC i macNem1.NW_012010578v1 C 0 I 2 s cerAty1.NW_012001186v1 12217170 3 + 20526591 GAC i cerAty1.NW_012001186v1 C 0 I 2 s chlSab2.chr11 119189553 3 + 128539186 GAC i chlSab2.chr11 C 0 I 2 s manLeu1.NW_012103587v1 502836 1 + 6255621 G-- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565259 3 - 8658521 GAC i colAng1.NW_012116043v1 C 0 I 2 s calJac3.chr9 114769947 3 + 124281992 GAC i calJac3.chr9 C 0 I 128 s aotNan1.NW_018491581v1 1524173 3 + 5364348 GAC i aotNan1.NW_018491581v1 C 0 I 2 s canFam3.chr26 33124271 1 - 38964690 --T i canFam3.chr26 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C e otoGar3.GL873618 4256558 0 + 7922563 C e cebCap1.NW_016107484v1 2828478 28 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=203595.000000 s hg38.chr12_KI270834v1_alt 24712 40 + 119498 GGGACCTAGGA-----------------------------------------------TGTGTTAGCTCCGTGTGGCTCTTCCAGAC s panTro5.chr12 127311031 40 + 137163284 GGGACCTAGGA-----------------------------------------------TGCGTTAGCTCCGTGTGGCTCTTCCAGAC i panTro5.chr12 I 2 C 0 s panPan2.chr12 125661877 40 + 135337776 GGGACCTAGGA-----------------------------------------------TGCGTTAGCTCCGTGTGGCTCTTCCAGAC i panPan2.chr12 I 2 C 0 s gorGor5.CYUI01015152v1 8174929 40 - 8369578 GGGACCTAGGA-----------------------------------------------TGTGTTAGCTCCGTGTGGCTCTTCCAGAC i gorGor5.CYUI01015152v1 I 42 C 0 s nomLeu3.chr10 97823018 40 + 106955855 GGGACCTAGGA-----------------------------------------------TGCGTGAGCTCTGTGTGGCTCTTCCAGAC i nomLeu3.chr10 T 40 C 0 s rheMac8.chr11 123947299 40 + 133663169 GGGACCTAGGA-----------------------------------------------TGCGTTAGCTCCGTGTGGCTCTTCCAGAC i rheMac8.chr11 I 2 I 128 s macFas5.chr11 128194899 40 + 137757926 GGGACCTAGGA-----------------------------------------------TGCGTTAGCTCCGTGTGGCTCTTCCAGAC i macFas5.chr11 I 2 I 2 s macNem1.NW_012010578v1 10595303 82 - 16319837 GGGCCCTAGGACACGTTA-----GCTCCATGTGGCTCTTCCAGACTGGGGATTTCGGACGCGTTAGCTCTGTGTGGCTCTTCCAGAC i macNem1.NW_012010578v1 I 2 I 2 s cerAty1.NW_012001186v1 12217175 82 + 20526591 GAGATGTAGGACACCTTA-----GCTCCGTGTGGCTCTTCTAGACTGGGGACCTAGGACGTGTTAGCTCCGTGTAGCTCTTCCACAC i cerAty1.NW_012001186v1 I 2 I 86 s chlSab2.chr11 119189558 81 + 128539186 GGGACCTAGGACACGTTAGCTCTG-----TTTGACTCTTCCAGACT-GGGACCTAGGACGCGTTAGCTCCGTGTGACTCTTCCAGAC i chlSab2.chr11 I 2 I 1 s manLeu1.NW_012103587v1 502837 73 + 6255621 ---------GACACGTTAGCTCCA-----TGTGGCTCTTCCAGACTGGGGACCTAGGACGCGTTAGCTCCGTGTGGCTCCTCCAGAC i manLeu1.NW_012103587v1 C 0 I 2 s colAng1.NW_012116043v1 4565264 39 - 8658521 G-GACTTAGGA-----------------------------------------------CGCATTAGCTCCATGTGGCTCTTCCAGAC i colAng1.NW_012116043v1 I 2 I 2 s calJac3.chr9 114770078 40 + 124281992 GGGACCGAGGA-----------------------------------------------CGCGTTAGCTCTGTGCGGCTCTTCCAGAC i calJac3.chr9 I 128 I 2 s aotNan1.NW_018491581v1 1524178 40 + 5364348 GGGACCTAGGA-----------------------------------------------TTCGCTAGTTCCGTGCGGCTCTTCCAGAC i aotNan1.NW_018491581v1 I 2 I 2 s canFam3.chr26 33124272 30 - 38964690 GGGACTTGGGA-----------------------------------------------AGTTTGCATTCTGTGTGGC---------- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C e otoGar3.GL873618 4256558 0 + 7922563 C e cebCap1.NW_016107484v1 2828478 28 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=85366.000000 s hg38.chr12_KI270834v1_alt 24752 11 + 119498 GGGACCTAGGA s panTro5.chr12 127311071 11 + 137163284 GGGACCTAGGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661917 11 + 135337776 GGGACCTAGGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8174969 11 - 8369578 GGGACCTAGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97823058 11 + 106955855 GGGACCTAGGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123947467 11 + 133663169 GGGACCTAGGA i rheMac8.chr11 I 128 C 0 s macFas5.chr11 128194941 11 + 137757926 GGGACCTAGGA i macFas5.chr11 I 2 C 0 s macNem1.NW_012010578v1 10595387 11 - 16319837 GGGACCTTGGA i macNem1.NW_012010578v1 I 2 C 0 s cerAty1.NW_012001186v1 12217343 11 + 20526591 GGGACCTTGGA i cerAty1.NW_012001186v1 I 86 C 0 s chlSab2.chr11 119189640 11 + 128539186 GGGACCTAGGA i chlSab2.chr11 I 1 C 0 s manLeu1.NW_012103587v1 502912 11 + 6255621 GGGACCTAGGA i manLeu1.NW_012103587v1 I 2 C 0 s colAng1.NW_012116043v1 4565305 11 - 8658521 GGGACCTCGGA i colAng1.NW_012116043v1 I 2 C 0 s calJac3.chr9 114770120 11 + 124281992 GGGACCGAGGA i calJac3.chr9 I 2 C 0 s aotNan1.NW_018491581v1 1524220 11 + 5364348 GGGACCTAGGA i aotNan1.NW_018491581v1 I 2 I 15 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C e canFam3.chr26 33124302 0 - 38964690 C e otoGar3.GL873618 4256558 0 + 7922563 C e cebCap1.NW_016107484v1 2828478 28 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=66608.000000 s hg38.chr12_KI270834v1_alt 24763 13 + 119498 TGTGTTAGTTCCA s panTro5.chr12 127311082 13 + 137163284 TGTGTTAGCTCCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661928 13 + 135337776 TGTGTTAGCTCCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8174980 13 - 8369578 TGTGTTAGTTCCA i gorGor5.CYUI01015152v1 C 0 I 125 s nomLeu3.chr10 97823069 13 + 106955855 TGTGTTAGCTCCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123947478 13 + 133663169 CGCGTTAGCTCCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128194952 13 + 137757926 CGCCTTAGCTCCG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10595398 13 - 16319837 TGCCTTAGCTCCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12217354 13 + 20526591 TGCCTTAGCTCCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189651 13 + 128539186 CGTGTTAGCTTCG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 502923 13 + 6255621 TGCGTTAGCTCCG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565316 13 - 8658521 TGCCTTAACTCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114770131 13 + 124281992 CGCGTTAGCTCTG i calJac3.chr9 C 0 C 0 s canFam3.chr26 33124302 9 - 38964690 ----TTAATtgtg i canFam3.chr26 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C e otoGar3.GL873618 4256558 0 + 7922563 C e aotNan1.NW_018491581v1 1524231 15 + 5364348 I e cebCap1.NW_016107484v1 2828478 28 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=48693.000000 s hg38.chr12_KI270834v1_alt 24776 7 + 119498 TGTGGGT s panTro5.chr12 127311095 7 + 137163284 TGTGGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661941 7 + 135337776 TGTGGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8175118 7 - 8369578 TGTGGCT i gorGor5.CYUI01015152v1 I 125 C 0 s nomLeu3.chr10 97823082 7 + 106955855 TGTGGCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123947491 7 + 133663169 TGTGGCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128194965 7 + 137757926 TGTGGCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10595411 7 - 16319837 TGTGGCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12217367 7 + 20526591 TGTGGCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189664 7 + 128539186 TGTGGCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 502936 7 + 6255621 TGTGGCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565329 7 - 8658521 TGTGGCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114770144 7 + 124281992 TGCGGCA i calJac3.chr9 C 0 C 0 s canFam3.chr26 33124311 7 - 38964690 tgtgtgt i canFam3.chr26 C 0 I 38 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C e otoGar3.GL873618 4256558 0 + 7922563 C e aotNan1.NW_018491581v1 1524231 15 + 5364348 I e cebCap1.NW_016107484v1 2828478 28 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=158996.000000 s hg38.chr12_KI270834v1_alt 24783 24 + 119498 CTTCCAGACTGGGGACCTAGGATG s panTro5.chr12 127311102 24 + 137163284 CTTCCAGACTGGGGACCTAGGACG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661948 24 + 135337776 CTTCCAGACTGGGGACCTAGGACG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8175125 24 - 8369578 CTTCCAGACTGGGGACCTAGGACG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97823089 24 + 106955855 CTTCCAGACTGGGGACCTAGGACG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123947498 24 + 133663169 CTTCCAGACTGGGGACCTCGGATG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128194972 24 + 137757926 CCTCCAGACTGGGGACCTAGGACG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10595418 24 - 16319837 CTTCCAGCCTGGGGACCTAGGATG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12217374 24 + 20526591 CTTCCAGCCTGGGGACCTAGGACG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189671 24 + 128539186 CTTCCAGACTGGGGACCTCGGACG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 502943 24 + 6255621 CTTCCAGACTGGGGACCTAGGACG i manLeu1.NW_012103587v1 C 0 I 399 s colAng1.NW_012116043v1 4565336 24 - 8658521 CTTCCAGACTGGGGACCTCGGACG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114770151 24 + 124281992 ATTCCAGACTGGGGACCGAGGATG i calJac3.chr9 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C e canFam3.chr26 33124318 38 - 38964690 I e otoGar3.GL873618 4256558 0 + 7922563 C e aotNan1.NW_018491581v1 1524231 15 + 5364348 I e cebCap1.NW_016107484v1 2828478 28 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=151969.000000 s hg38.chr12_KI270834v1_alt 24807 24 + 119498 TGTTAGCTCCATGTGGCTCTTCCA s panTro5.chr12 127311126 24 + 137163284 TGTTAGCTCCACGTGGCTCTTCCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661972 24 + 135337776 TGTTAGCTCCACGTGGCTCTTCCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8175149 24 - 8369578 TGTTAGCTCCATGTGGCTCTTCCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97823113 24 + 106955855 TGTTAGCTCTGTGTGGCTCTTTCA i nomLeu3.chr10 C 0 T 79 s rheMac8.chr11 123947522 24 + 133663169 TGTTAGCTCCATGTGGCTCTTCCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128194996 24 + 137757926 CGTTAGCTCCATGTGGCTCTTCCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10595442 24 - 16319837 TGTTAGCTCCATGTGGCTCTGCCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12217398 24 + 20526591 TGTTAGCTCCATGTGGCTCTTCCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189695 24 + 128539186 TGTTAGCTCTATGTGGCTCTTCCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 503366 24 + 6255621 TGTTAGCTCCGTGTGGCTCTTCCA i manLeu1.NW_012103587v1 I 399 C 0 s colAng1.NW_012116043v1 4565360 24 - 8658521 CATTAGCTCCGTGTGGCTCTTCCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114770175 24 + 124281992 CGTTAGCTCTGTGCGGCAATTCCA i calJac3.chr9 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C e canFam3.chr26 33124318 38 - 38964690 I e otoGar3.GL873618 4256558 0 + 7922563 C e aotNan1.NW_018491581v1 1524231 15 + 5364348 I e cebCap1.NW_016107484v1 2828478 28 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=7480.000000 s hg38.chr12_KI270834v1_alt 24831 5 + 119498 GACTG s panTro5.chr12 127311150 5 + 137163284 GACTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125661996 5 + 135337776 GACTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8175173 5 - 8369578 GACTG i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123947546 5 + 133663169 GACTG i rheMac8.chr11 C 0 I 41 s macFas5.chr11 128195020 5 + 137757926 GACTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10595466 3 - 16319837 GAC-- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12217422 3 + 20526591 GAA-- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189719 3 + 128539186 GAC-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 503390 5 + 6255621 GACTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565384 3 - 8658521 GAC-- i colAng1.NW_012116043v1 C 0 I 40 s calJac3.chr9 114770199 5 + 124281992 GACTG i calJac3.chr9 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C e canFam3.chr26 33124318 38 - 38964690 I e otoGar3.GL873618 4256558 0 + 7922563 C e aotNan1.NW_018491581v1 1524231 15 + 5364348 I e cebCap1.NW_016107484v1 2828478 28 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e nomLeu3.chr10 97823137 79 + 106955855 T a score=151359.000000 s hg38.chr12_KI270834v1_alt 24836 26 + 119498 GGGACCTAGGATGTGTCAGCTCCATG s panTro5.chr12 127311155 26 + 137163284 GGGACCTAGGATGTGTTAGCTCCATG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125662001 26 + 135337776 GGGACCTAGGATGTGTTAGCTCCATG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8175178 26 - 8369578 GGGACCTAGGATGTGTCAGCTCCCTG i gorGor5.CYUI01015152v1 C 0 I 205 s nomLeu3.chr10 97823058 26 + 106955855 GGGACCTAGGATGTGTTAGCTCCATG i nomLeu3.chr10 T 79 C 0 s rheMac8.chr11 123947592 26 + 133663169 GGGACCTAGGATACATTAGCTCCATG i rheMac8.chr11 I 41 C 0 s macFas5.chr11 128195025 26 + 137757926 GGGACCTCGGACGTGTTAGCTCCATG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10595469 26 - 16319837 GGGGCCTAGGACACGTTAGCTCCTTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12217425 26 + 20526591 GGGGCCTAGGACACGTTAGCTCCTTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189722 26 + 128539186 GGGACCTAGGACGCCTTAGCTCCGTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 503395 26 + 6255621 GGGACCTTGGACGTGTTAGCTCCATG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565427 26 - 8658521 GGGACCTAGGATGTGTTAGCTCCATG i colAng1.NW_012116043v1 I 40 C 0 s calJac3.chr9 114770204 26 + 124281992 GGGACCGAGGATGCCCTAACTCCATG i calJac3.chr9 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C e canFam3.chr26 33124318 38 - 38964690 I e otoGar3.GL873618 4256558 0 + 7922563 C e aotNan1.NW_018491581v1 1524231 15 + 5364348 I e cebCap1.NW_016107484v1 2828478 28 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=101844.000000 s hg38.chr12_KI270834v1_alt 24862 14 + 119498 TGGCTCTTCCAGAC s panTro5.chr12 127311181 14 + 137163284 TGGCTCTTCCAGAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125662027 14 + 135337776 TGGCTCTTCCAGAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8175409 14 - 8369578 TGGCTCTTCCAGAC i gorGor5.CYUI01015152v1 I 205 C 0 s nomLeu3.chr10 97823084 14 + 106955855 TGGCTCTTCCAGAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123947618 14 + 133663169 TGGCTCTTCCAGAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128195051 14 + 137757926 TGGCTCTTCCAGAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10595495 14 - 16319837 TGGCTCTTCCAGAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12217451 14 + 20526591 TGGCTCTTCCAGAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189748 14 + 128539186 TGGCTCTTCCAGAT i chlSab2.chr11 C 0 I 81 s manLeu1.NW_012103587v1 503421 14 + 6255621 TAGCTCTTCCAGAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565453 14 - 8658521 TGGCTCTTCCAGAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114770230 14 + 124281992 TGGCTCTTCCAGAC i calJac3.chr9 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C e canFam3.chr26 33124318 38 - 38964690 I e otoGar3.GL873618 4256558 0 + 7922563 C e aotNan1.NW_018491581v1 1524231 15 + 5364348 I e cebCap1.NW_016107484v1 2828478 28 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=5348.000000 s hg38.chr12_KI270834v1_alt 24876 2 + 119498 TG s gorGor5.CYUI01015152v1 8175423 2 - 8369578 TG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97823098 2 + 106955855 TG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123947632 2 + 133663169 TG i rheMac8.chr11 C 0 I 332 s macFas5.chr11 128195065 2 + 137757926 TG i macFas5.chr11 C 0 I 415 s manLeu1.NW_012103587v1 503435 2 + 6255621 TG i manLeu1.NW_012103587v1 C 0 I 289 s colAng1.NW_012116043v1 4565467 2 - 8658521 TG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114770244 2 + 124281992 TG i calJac3.chr9 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C e canFam3.chr26 33124318 38 - 38964690 I e otoGar3.GL873618 4256558 0 + 7922563 C e aotNan1.NW_018491581v1 1524231 15 + 5364348 I e cebCap1.NW_016107484v1 2828478 28 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e chlSab2.chr11 119189762 81 + 128539186 I e cerAty1.NW_012001186v1 12217465 0 + 20526591 C e macNem1.NW_012010578v1 10595509 0 - 16319837 C e panPan2.chr12 125662041 0 + 135337776 C e panTro5.chr12 127311195 0 + 137163284 C a score=125335.000000 s hg38.chr12_KI270834v1_alt 24878 18 + 119498 GGGACCTAGGATGTGTCA s panTro5.chr12 127311195 18 + 137163284 GGGACCTAGGATGTGTTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125662041 18 + 135337776 GGGACCTAGGATGTGTTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8175425 18 - 8369578 GGGACCTAGGATGTGTTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97823100 18 + 106955855 GGGACCTAGGACGTGTTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123947966 18 + 133663169 GGGACCTAGGATGTGTTA i rheMac8.chr11 I 332 C 0 s macFas5.chr11 128195482 18 + 137757926 GGGACCTAGGATGTGTTA i macFas5.chr11 I 415 C 0 s macNem1.NW_012010578v1 10595509 18 - 16319837 GGGACCTAGGATGTGTTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12217465 18 + 20526591 GGGACCTAGGATGTGTTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189843 18 + 128539186 GGGACCTAGGATGTGTTA i chlSab2.chr11 I 81 C 0 s manLeu1.NW_012103587v1 503726 18 + 6255621 GGGACCTAGGATGTGTTA i manLeu1.NW_012103587v1 I 289 C 0 s colAng1.NW_012116043v1 4565469 18 - 8658521 GAGACCTAGGATATGTTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114770246 18 + 124281992 GGGGCCTAGGACGTGTTA i calJac3.chr9 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796671 0 - 1116856 C e canFam3.chr26 33124318 38 - 38964690 I e otoGar3.GL873618 4256558 0 + 7922563 C e aotNan1.NW_018491581v1 1524231 15 + 5364348 I e cebCap1.NW_016107484v1 2828478 28 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=58531.000000 s hg38.chr12_KI270834v1_alt 24896 8 + 119498 GCTCCGTG s panTro5.chr12 127311213 8 + 137163284 GCTCCGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125662059 8 + 135337776 GCTCCGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8175443 8 - 8369578 GCTCCGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97823118 8 + 106955855 GCTCTGTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123947984 8 + 133663169 GCTCCGTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128195500 8 + 137757926 GCTCCGTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10595527 8 - 16319837 GCTCCGTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12217483 8 + 20526591 GCTCCGTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189861 8 + 128539186 GCTCCATG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 503744 8 + 6255621 GCTCCGTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565487 8 - 8658521 GCTCCGTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114770264 8 + 124281992 GCTCCACA i calJac3.chr9 C 0 C 0 s dasNov3.JH568189 796671 8 - 1116856 GTTCTGCG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e canFam3.chr26 33124318 38 - 38964690 I e otoGar3.GL873618 4256558 0 + 7922563 C e aotNan1.NW_018491581v1 1524231 15 + 5364348 I e cebCap1.NW_016107484v1 2828478 28 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=119721.000000 s hg38.chr12_KI270834v1_alt 24904 22 + 119498 TGGCTCTTTGATTTTT-GTTTTT s panTro5.chr12 127311221 22 + 137163284 TGGCTCTTTGATTTTT-GTTTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125662067 22 + 135337776 TGGCTCTTTGATTTTT-GGTTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8175451 22 - 8369578 TGGCTCTTTGATTTTT-GTTTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97823126 18 + 106955855 TGGCTCTTTCATTT-----TTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123947992 22 + 133663169 TGGCTCTTTGATTTTT-GTTTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128195508 21 + 137757926 TGGCTCTTTGATTTTT-G-TTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10595535 21 - 16319837 TGGCTCTTTGATTTTT-G-TTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12217491 20 + 20526591 TGGCTCTTTGATTTTT-G--TTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189869 22 + 128539186 TGGCTCTTTGATTTTTGG-TTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 503752 21 + 6255621 TGGCTCTTTGATTTTT-G-TTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565495 20 - 8658521 TGGCTCTTTGATTTTT-G--TTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114770272 18 + 124281992 TGGCTGTTTGATTTTT-G----T i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2828506 18 + 4466143 TGGCTCTTTGATTTTT-G----T i cebCap1.NW_016107484v1 I 28 C 0 s aotNan1.NW_018491581v1 1524246 18 + 5364348 TGGCTCTTTGATTTTT-G----T i aotNan1.NW_018491581v1 I 15 C 0 s dasNov3.JH568189 796679 12 - 1116856 AGGCTTTTAGAT----------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e canFam3.chr26 33124318 38 - 38964690 I e otoGar3.GL873618 4256558 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M a score=123377.000000 s hg38.chr12_KI270834v1_alt 24926 15 + 119498 TTTTT--CTGCTGTGTC s panTro5.chr12 127311243 17 + 137163284 TTTTTTTCTGCTCTGTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125662089 16 + 135337776 TTTTT-TCTGCTCTGTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8175473 14 - 8369578 TTTTT-TCTGCTCTG-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97823144 16 + 106955855 TTTTT-TCTGCTCTGTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123948014 16 + 133663169 TTTTT-CCTGCTCTGTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128195529 16 + 137757926 TTTTT-CCTGCTCTGTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10595556 16 - 16319837 TTTTT-CCTGCTCTGTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12217511 16 + 20526591 TGTTT-TCTGCTCTGTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189891 16 + 128539186 TTTTT-TCTGCTCTGTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 503773 16 + 6255621 TTTTT-CCTGCTCTGTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565515 16 - 8658521 TTTTT-TCTGCTCTGTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114770290 16 + 124281992 TTTTT-TCTGCTGTGTC i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2828524 16 + 4466143 TTTTT-TCTGCTGTGTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1524264 16 + 5364348 TTTTT-TCTTCTGTGTC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4256558 15 + 7922563 -TTTT-TCCACTTGGTT i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796691 0 - 1116856 C e canFam3.chr26 33124318 38 - 38964690 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=122387.000000 s hg38.chr12_KI270834v1_alt 24941 27 + 119498 TCTCTTCTTC---CTCCCCCACCtcttttt s panTro5.chr12 127311260 27 + 137163284 TCTCTTCTTC---CTCCCCCACCtcttttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125662105 27 + 135337776 TCTCTTCTTC---CTCCCCCACCtcttttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8175487 27 - 8369578 TCTCTTCTTC---CTCCCTCACCtcttttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97823160 27 + 106955855 TCTCTTCTTA---CACCCCCACCtcttttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123948030 19 + 133663169 TCTCT----------CCCCCACCtc-tttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128195545 19 + 137757926 TCTCT----------CCCCCACCtc-tttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10595572 19 - 16319837 TCTCT----------CCCCCACCtc-tttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12217527 19 + 20526591 TCTCT----------CCCCCACCtc-tttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189907 19 + 128539186 TCTCT----------CCCCCACCtc-tttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 503789 19 + 6255621 TCTCT----------CCCCCACCtc-tttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565531 19 - 8658521 TCTCT----------CCCCCACCtc-tttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114770306 26 + 124281992 TCTCTTCTCC---CTCCCCAACCTC-tttt i calJac3.chr9 C 0 I 825 s cebCap1.NW_016107484v1 2828540 26 + 4466143 TCTCTTCTCC---CTCCCCAACCTC-tttt i cebCap1.NW_016107484v1 C 0 I 870 s aotNan1.NW_018491581v1 1524280 26 + 5364348 TCTCTTCTCC---CTTCCCCACCTC-tttt i aotNan1.NW_018491581v1 C 0 I 835 s otoGar3.GL873618 4256573 22 + 7922563 TCTCTGC--------GCACCACttcatatt i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33124356 24 - 38964690 TCTCTCCCTC-----CTCCTGTCtc-tttt i canFam3.chr26 I 38 I 2 s dasNov3.JH568189 796691 27 - 1116856 TCCTTTATTCCAACACCCCCACTAT-TT-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=2217864.000000 s hg38.chr12_KI270834v1_alt 24968 340 + 119498 aaattataactttta--attttggaataatgtaagatgc-acaagaggttgcaacaatagtagcacggactttccaggtgccccttc-ccc-----atgag-----aacatctcacatagccacagtccattgcccaaaccagggagttggtgttggcacaagtgccattaactcaggtgtagacgttgtgtggatttcaccaggttt-------cacat-----tctctctat--------------ggcgtg--tgcgtgtagttagttctatgacgttttatcacatgtggatgggagtggccgtcaccaca-tcaggatacagaactattccatcaccacgaccacaaagaagagagacagggtcttactctgtcaccc s panTro5.chr12 127311287 340 + 137163284 aaattataactttta--attttggaataatgtaagatgc-acaagaggttgcaacaatagtagcacggactttccaggtgccccttc-ccc-----atgag-----aacatctcacatagccacagtccattgcccaaaccaggaagttggtgttggcacaagtgccattaactcaggtgtagacgttgtgtggatttcaccaggttt-------cacat-----tctctctct--------------ggcgtg--tgcgtgtagttagttctatgacgttttatcacatgtggatgggagtggccgtcaccaca-tcaggatacagaactattccatcaccacgaccacaaagaagagagacagggtcttactctgtcaccc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125662132 340 + 135337776 aaattataactttta--attttggaataatgtaagatgc-acaagaggttgcaacaatagtagcacggactttccaggtgccccttc-ccc-----atgag-----aacatctcacatagccacagtccattgcccaaaccaggaagttggtgttggcacaagtgccattaactcaggtgtagacgttgtgtggatttcaccaggttt-------cacat-----tctctctct--------------ggcgtg--tgcgtgtagttagttctgtgacgttttatcacatgtggatgggagtggccgtcaccaca-tcaggatacagaactattccatcaccacgaccacaaagaagagagacagggtcttactctgtcaccc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8175514 340 - 8369578 aaattataactttta--attttggaataatttaagatgc-acaagaggttgcaacaatagtagcacggactttccaggcgccccttc-ccc-----atgag-----aacatctcacatagccacagtccattgcccaaaccaggaagttggtgttggcacaagtgccattaactcaggtgtagacattgtgtggatttcaccaggttt-------cacat-----tctctctct--------------ggcgtg--tgcgtgtagttagttctatgacattttatcacatgtggatgggagtggccatcagcaca-tcaggatacagaactattccatcaccacgaccacaaagaagagagacagggtcttactctgtcaccc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97823187 339 + 106955855 aaattataactttta--attttggaataatttaagatgc-acaagagattgcaacaatagtagcatggaatttccgggtgccccttc-ccc-----atgag-----agcatctcacatatccacagtccattgcccaaaccagaaagttggtgttggcacaagtgccattaactcaggtatagacgttatatggatttcacca-gttt-------cacat-----tctctcttt--------------ggcgtg--tgcgtgtagttagttctatgacattttatcacatgtggttgggagtagctgtcaccaca-tcaggatacagaactattctatcaccacaaccacaaagaagagagacaaggtcttactctgtcaccc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123948049 341 + 133663169 aaattgtaactttta--attttggaataatttaagatgc-acaagaggttgccacaatagtagcacggaatttccgggtgcccctttcccc-----atgag-----aatatctcacatatccacagcccactgcccaaaccaggaagctggtgttggcacaagtgccattaactcaggtatagacgttatgtggatttcaccaggttt-------cccat-----tctctctct--------------ggcgtg--tgcgtgtagttagttctatgatgttttatcacatatggacgggagtggctgtcaccaca-tcaggatacagaactattccatcgccacaaccacaaagaagagagacagggtcttactctgtcaccc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128195564 341 + 137757926 aaattgtaactttta--attttggaataatttaagatgc-acaagaggttgccacaatagtagcacggaatttccgggtgcccctttcccc-----atgag-----aatatctcacatatccacagcccactgcccaaaccaggaagctggtgttggcacaagtgccattaactcaggtatagacgttatgtggatttcaccaggttt-------cccat-----tctctctct--------------ggcgtg--tgcgtgtagttagttctatgatgttttatcacatatggacgggagtggctgtcaccaca-tcaggatacagaactattccatcgccacaaccacaaagaagagagacagggtcttactctgtcaccc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10595591 341 - 16319837 aaattgtaactttta--attttggaataatttaagatgc-acaagaggttgccacagtagtagcacggaatttccgggtgcccctttcccc-----atgag-----aatatctcacatatccacagcccactgcccaaaccaggaagctggtgttggcacaggtgccattaactcaggtatagacgttatgtggatttcaccaggttt-------cccat-----tctctctct--------------ggcgtg--tgcgtgtagttagttctatgatgttttatcacatgtggacgggagtggctgtcaccaca-tcaggatacagaactattccatcgccacaaccacaaagaagagagacagggtcttactctgtcaccc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12217546 340 + 20526591 aaattataactttta--attttggaataatttaagatgc-acaagaagttgcaacaatagtagcacggaatttccgggtgccccttt-ccc-----atgag-----aatatctcacatatccacagcccattgcccaaaccaggaagctggtgttggcacaagtgccattaactcaggtatagacgttatgtagatttcaccaggttt-------cacat-----tctctctct--------------ggcgtg--tgcgtgtagttagttctatgatgttttatcacatgtggacgggagtggccgtcaccaca-tcaggatacagaactattccatcaccacaaccacaaagaagagagacagggtcttactctgtcaccc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119189926 341 + 128539186 aaattgtaactttta--gttttggaataatttaagatgc-acaagaggttgcaacaatagtagcacggaatttccgggtgcccctttcccc-----atgag-----aatatctcacatatccatagcccattgcccaaaccaggaagctggtgttggcacaagtgccattaactcaggtatagacgttatgtggatttcaccaggttt-------cccat-----tctctctct--------------ggcgtg--tgcgtgtagttagttctatgatgttttaacacatgtggacgggagtggccgtcaccaca-tcaggatacagaactattccatcaccacaaccacaaagaagagagacagggtcttactctgtctccc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 503808 341 + 6255621 aaattgtaactttta--attttggaataatttaagatgc-acaagaggttgcaacaatagtagcacggaatttccgggtgcccctttcccc-----atgag-----aatatctcacatatccatagcccactgcccaaaccaggaagctggttttggcacaagtgccattaactcaggtatagacgttatgtggatttcaccaggttt-------cccat-----tctctctct--------------ggcgtg--tgcgtgtagttagttctatgatgttttatcacatgtggacgggagtggccgtcaccaca-tcaggatacagaactattccatcaccacaaccacaaagaagagagacagggtcttactctgtcaccc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565550 341 - 8658521 aaattataactttta--attttggaataatttaagatgc-acaagaggttgcaacaatagtagcacggaatttccgggtgcccctttcccc-----atgag-----aatatctcacatatacacagcccattgcccaaaccaggaagctggtgttggcacaagtgccattaactcaggtatagatgttgtgtggacttcaccaggttt-------cacat-----tctctctct--------------ggcgtg--tgcgtgtagttacttctatgatgttttatcacatgtggatgggagtggccgtcaccaca-tcaggatacagaactattccatcaccacaaccacaaagaagagagacagggtcttactctgtcaccc i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4256595 305 + 7922563 aagtt----cttttaacattttggattaattgaagacgc-agaagagcttgcagcaatagtaac----agttctggtgtaccctttc-tcc-----atgat-----aacgtcatacacatacgtggtctgtctcctaaaccaggaaaatgatgttcgcatgaatgccattaactcagctacagacttttcttggatttcaccgggttt-------tacat-----tctctctctctctttcaatctggggggtg--tgtgtg----tatttttgtgacattttatcatttacgtac-tgagtgaccatt-tcaga--caagatacaga--cattccctta----------------------------------ctgtcaccc i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33124382 328 - 38964690 aaattgttagtttta---ttttcaagtaatc--agactcaacaagaagtgggaacaatag-aacagag---ttccatgtaccccctgcctcccctggtgat-----gacaatttatacccccaaggcaggttgtcaaaaccgggaccgggagatgggcat-ggtgctattatctcaggcacaagctttatctggattccattagtttt-------tacatctccctgtctctgt--------------ggtatgtttgtttgtatatagttctagaacattttgttgtatgtgt---ggcatagccagtgccacaatcaggatacagaactgggccatcaccacaa-----------agaaac----tccttc-ctgtcatcc i canFam3.chr26 I 2 I 487 s dasNov3.JH568189 796718 280 - 1116856 ATATtttagcttctc--atattgcaagaatttaagactc-acaagaagttgcaaaaatagtata--ggggttcccatgtacccatcc-ccc-----cggcgccccccataccttacacaaccac-gcacattgtcaagtccaggagcaggaggttggcacaa-cgcaatttact--ggcacagactgttattcaatttcatcagttttttatgcccccct-----ccttctttt--------------ggtgtg--tgtgtgta--tagatctgtgacattttaccacttgtgta-----------------aac-tcaag----------------taaccaccatcataa------------------------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e aotNan1.NW_018491581v1 1524306 835 + 5364348 I e cebCap1.NW_016107484v1 2828566 870 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114770332 825 + 124281992 I a score=6006.000000 s hg38.chr12_KI270834v1_alt 25308 1 + 119498 a s panTro5.chr12 127311627 1 + 137163284 a i panTro5.chr12 C 0 C 0 s panPan2.chr12 125662472 1 + 135337776 a i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8175854 1 - 8369578 a i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97823526 1 + 106955855 a i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123948390 1 + 133663169 a i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128195905 1 + 137757926 a i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10595932 1 - 16319837 a i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12217886 1 + 20526591 a i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119190267 1 + 128539186 a i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 504149 1 + 6255621 a i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565891 1 - 8658521 a i colAng1.NW_012116043v1 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e dasNov3.JH568189 796998 0 - 1116856 C e canFam3.chr26 33124710 487 - 38964690 I e otoGar3.GL873618 4256900 0 + 7922563 C e aotNan1.NW_018491581v1 1524306 835 + 5364348 I e cebCap1.NW_016107484v1 2828566 870 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114770332 825 + 124281992 I a score=1505556.000000 s hg38.chr12_KI270834v1_alt 25309 263 + 119498 ggctggagtgcagtggtgggatcacagctcactgcagcctcaaactcctgggctcaagtgatcttcctgcctcagcctcctgagtatttgggacc------------------------acaggcagatgccatcacacctggctaatcttgcttattttttgtagagacagggtctctacagcccaggctggtctcgaacttctgggctccagtaatcctcccacctcagcctcccgagtagctgggactacaggt-tgtgccactgcacccagcctcatgttactg s panTro5.chr12 127311628 263 + 137163284 ggctggagtgcagtggtgggatcacagctcactgcagcctcaaactcctgggctcaagtgatcttcctgcctcagcctcctgagtatttgggacc------------------------acaggcagatgccatcacgcctggctaatcttgcttattttttgtagagacagggtctctacagcccaggctggtctcaaacttctgggctccagtaatcctcccacctcagcctcccgagtagctgggactacaggt-tgtgccactgcacccagcctcatgttactg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125662473 262 + 135337776 ggctggagtgcagtggtgggatcacagctcactgcagcctcaaactcctgggctcaagtgatcttcctgcctcagcctcctgagtatttgggacc------------------------acaggcagatgccatcacgcctggctaatcttgctta-tttttgtagagacagggtctctacagcccaggctggtctcaaacttctgggctccagtaatcctcccacctcagcctcccgagtagctgggactacaggt-tgtgccactgcacccagcctcatgttactg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8175855 263 - 8369578 ggctggagtgcaatggtgggatcacagctcactgcagcctcaaactcctgggctcaagtgatcttcctgcctcagcctcctgagtatttgggacc------------------------acaggcagatgccatcacgcctggctaatcttgcttattttttgtagagacagggtctctacagcccaggctggtctcgaacttctgggctccagtaatcctcccacctcagcctcccgagtagctgggactacaggt-tgtgccactgcacccagcctcatgttactg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97823527 264 + 106955855 ggctggagtacagtggtgggatcacagctcactgcagcctcaaactcctgggctcaagtgatcttcctgcctcagcctcctgagtatttgggacc------------------------acaggcagatgccatcacgcctggctaatcttgcttattttttgtagagacagggtctctacagcccaggctggtctcgaacttccaggctcaagtaatcttcccacctcagcctccctagtagctgggactacaggtgtgtgccactgcacccagcctcatgttactg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123948391 264 + 133663169 ggctagagtgcaatggtgggatcacagctcacggcagtctcaaactcctgggctcaaatgatcttcctgcctcagcctcctgagtatttgggacc------------------------acaggcagatgccatcatgcctggctaatcctgcttattttttgtagagacagggtctctacagcccaggctggtcttgaacttctgggctcaagtaatcctcccacctcagcctcccgagtagctgggactacaggtgtgtgccactgcacccagcctcttgttactg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128195906 264 + 137757926 ggctagagtgcaatggtgggatcacagctcacggcagtctcaaactcctgggctcaaatgatcttcctgcctcagcctcctgagtatttgggacc------------------------acaggcagatgccatcatgcctggctaatcctgcttattttttgtagagacagggtctctacagcccaggctggtcttgaacttctgggctcaagtaatcctcccacctcagcctcccgagtagctgggactacaggtgtgtgccactgcacccagcctcttgttactg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10595933 264 - 16319837 ggctagagtgcaatggtgggatcacagctcacggcagtctcaaactcctgggctcaaatgatcttcctgcctcagcctcctgagtatttgggacc------------------------acaggcagatgccatcatgcctggctaatcctgcttattttttgtagagacagggtctctacagcccaggctggtcttgaacttctgggctcaagtaatcctcccacctcagcctcccgagtagctgggactacaggtgtgtgccactgcacccagcctcttgttactg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12217887 264 + 20526591 ggctggagtgcaatggtgggatcacagctcacggcagtctcaaactcctgggctcaaatgatcttcctgcctcagcctcctgagtatttgggacc------------------------acaggcagatgccatcatgcctggctaatcttgcttattttttgtagagacagggtctctacagcccaggctggtcttgaacttctgggctcaagtaatcctcccacctcagcctcccgagtagctgggactacaggtgtgtgccactgcacccagcctcttgttactg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119190268 264 + 128539186 ggctggagtgcaatggtgggatcacagctcacggcagtctcaaactcctgggctcaaatgatcttcctgcctcagcctcctgagtatttgggacc------------------------acaggcagatgccatcatgcctggctaatcttgcttattttttgtagagacatggtctctatagcccaggctggtcttgaacttctgggctcaagtaatcctcccacctcagcctcccgaatagctgggactacaggtgtgtgccactacacccagcctcttgttactg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 504150 264 + 6255621 ggctagagtgcaatgatgggatcacagctcacggcagtctcaaactcctgggctcaaatgatcttcctgcctcagcctcctgagtatttgggacc------------------------acaggcagatgccatcatgcctggctaatcttgcttattttttgtagagacacggtctttacagcccaggctggtcttgaacttctgggctcaagtaatcctcccacctcagcctcccgagtagctgggactacaggtgtgtgccactgcacccagcctcttgttactg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4565892 288 - 8658521 ggctggagtgcaatggtgggatcacagctcactgcagtctcaaactcctgggctcaaatgatcttcctgcctcagcctcctgagtatttgggactcctgagtatttgggagtattgggaccaggcagatgccatcatgcctggctaatcttgcttattttttgtagagacagggtctctacagcccaggctggtcttgaacttctgggctcaagtaatcctcccacctcagcctcccgagtagctgggactacaggtgtgtgccactgcacccagcctcttgttactg i colAng1.NW_012116043v1 C 0 C 0 s dasNov3.JH568189 796998 82 - 1116856 --ctggggtaca------ggaccgc--cccactgcagtc-------------------------------------------agggttcaggact------------------------gc--------tccatcac------------------------------------------aaagcacaa--------------------------------------------------agcagct-----------------------------cccttgtgttccct i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e canFam3.chr26 33124710 487 - 38964690 I e otoGar3.GL873618 4256900 0 + 7922563 C e aotNan1.NW_018491581v1 1524306 835 + 5364348 I e cebCap1.NW_016107484v1 2828566 870 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114770332 825 + 124281992 I a score=1549296.000000 s hg38.chr12_KI270834v1_alt 25572 261 + 119498 cttactagacacattc-tcccctcaaccctaactcctgcaacccctgatctattcttcagtcagtgtaattttgtcactttgagaatgttctctacctgga---gacatgtagtatggaaccctttgagacgggcttctttcactcagcacaatgcctttgagaATATGTAGATTCAAAAACAACTTTATGGATAACT--TTTATCCTCTTTTAAGCTATC--TATAAAATGTACATACGTAAGATCTTTCCA---GAAGCTCTGGAAAAGT- s panTro5.chr12 127311891 261 + 137163284 cttactagacacattc-ttccctcaaccctaactcctgcaacccctgatctattcttcagtcagtgtaattttgtcactttgagaatgttctctacctgga---gacatgtagtatggaaccctttgagatgggcttctttcactcagcacaatgcctttgagaATATGTAGATTCAAAACCAACTTTATGGATAACT--TTTATCCTCTTTTAAGCTATC--TATAAAATGTACATACGTAAGATCTTTCCA---GAAGCTCTGGAAAAGT- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125662735 261 + 135337776 cttactagacacattc-ttccctcaaccctaactcctgcaacccctgatctattcttcagtcagtgtaattttgtcactttgagaatgttctctacctgga---gacatgtagtatggaaccctttgagatgggcttctttcactcagcacaatgcctttgagaATATGTAGATTCAAAACCAACTTTATGGATAACT--TTTATCCTCTTTTAAGCTATC--TATAAAATGTACATACGTAAGATCTTTCCA---GAAGCTCTGGAAAAGT- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176118 261 - 8369578 cttactagatacattc-tcccctcaaccctaactcctgcaacccctgatctattcttcagtcagtgtaattttgtcactttgagaatgttctctacctgga---gacatgtagtatggaaccctttgagacgggcttctttcactcagcacaatgcctttgagaATATGTAGATTCAAAACCAACTTTATGGATAACT--TTTATCCTCTTTTAAGATATC--TATAAAATGTACATATGTAAGATCTTTCCA---GAAGCTCTGGAAAAGT- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97823791 261 + 106955855 ctgactagacacattc-tcccctcaaccctaactcctgcaagccctgatctattcttcagtcagtgtaattttgtcactctgagaatgttctctacctgga---gacatggagtatggaaccctttgagatgggcttctttcactcagcacaatgcctttgagattATGTAGATTCAAAACCAACTTTATGGATAACT--TTTATCCTCTTTTAAGCTATC--TATAAAATGTACATATGTAAGATCTTTCCA---GAAGCTCTGGAAGAGT- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123948655 259 + 133663169 cttactagacacactc-tcccccaaaccctaactctggcaacccctgatctattcttcagccagtatagttttgtcactttgagactgttctgtacctgga---gacgtgtagcatggaaccctttgaggcgggcttcttt-actcagcacaatgcctttgagaATATGT-GGTTCAAAAACAACTTTATAGATAATG--TTTATTGTCTTTTAAGCTATC--TATAACATGTACGTATGTAAGATCTTTCCA---GAAGCTCTGGAAAAGT- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128196170 259 + 137757926 cttactagacacactc-tcccccaaaccctaactctggcaacccctgatctattcttcagccagtatagttttgtcactttgagactgttctgtacctgga---gacgtgtagcatggaaccctttgaggcgggcttcttt-actcagcacaatgcctttgagaATATGT-GGTTCAAAAACAACTTTATAGATAATG--TTTATCCTCTTTTAAGCTATC--TATAACATGTACGTATGTAAGATCTTTCCA---GAAGCTCTGGAAAAGT- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10596197 259 - 16319837 cttactagacacactc-tcccccaaaccctaactctggcaacccctgatctattcttcagccagtatagttttgtcactttgagactgttctgtacctgga---gacgtgtagcatggaaccctttgaggcgggcttcttt-actcagcacaatgcctttgagaATATGT-GGTTCAAAAACAACTTTATAGATAATG--TTTATCCTCTTTTAAGCTATC--TATAACATGTACGTATGTAAGATCTTTCCA---GAAGCTCTGGAAAAGT- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12218151 259 + 20526591 cttactagacacactc-tcccccaaaccctaactctggcaacccctgatctgttcttcagccagtataattttgtcactttgaggctgctctgtacctgga---gacatgtagtatggaaccctttcaggcgggcttcttt-actcagcacaatgcctttgagaATATGT-GGTTCAAAAACAACTTTATAGATAATG--TTTATCCTCTTTTAAGCTATC--TATAACATGTACGTATGTAAGATCTTTCCA---GAAGCTCTGGAAAAGT- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119190532 259 + 128539186 cttactagacacactc-tcccctaaaccctaactctagcaacccctgatctgttcttcagccagtgtaattttgtcactttgaggctgctctgtacctgga---gacgtgtagtatggaaccctttgaggcgggcttcttt-actcagcacaatgcctttgagaATATGT-GGTTCAAAAACAACTTTATAGATAATG--GTTATCCTCTTTTCAGCTATC--TATAACATGTACGTATGTAAGATCTTTCCA---GAAGCTCTGGAAAAGT- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 504414 259 + 6255621 cttactagacacactc-tcccccaaaccctaactctggcaacccctgatctattcttcagccagtatagttttgtcactttgagactgttctgtacctgga---gacatgtagtatggaaccctttgaggcgggcttcttt-actcagcacaatgcctttgagaATATGT-GGTTCAAAAACAACTTTATAGATAATG--TTTATCCTCTTTTAAGCTATC--TATAACATGTATGTATGTAAGATCTTTCCA---GAAGCTCTGGAAAAGT- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4566180 261 - 8658521 cttactagacacactc-tcccccaaaccctaactctggcaacccc-gatctattcttcagccagtataattttgtcactttgagactgttctgtacctgga---gacatgtagtatggaaccctctgaggtgggcttcttt-actcagcacaatgcctttgagaATATGTGGGTTCAAAAACAACTTTATAGATAATG--TTTATCCACTTTTAAGCTATCTATATAACATGTACGTATGTAAGATCTTTCCA---GAAGCTCTGCAAAAGT- i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4256900 252 + 7922563 cttagtagtcacacct-ttccc--agctc-----ctggcagccccc--tctgttcccca-tcactgtaattgcatcacttcaaaaatagtctacacctggagtcgccacgcagcatgcacccctctgggaagggcgtcctccactcagcataacaccttgaagaATATGTGGATTAAAAAAAAA---TATTGTTAACA--TTTATTCTTTTAAAAGATATC--TGTCAAAC-TAAGCGTCT-AGATATATCCACAGAAGGTCCTGGAAAAGA- i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 797080 220 - 1116856 -ttcatagtcacacacactcccccaacctgacccctgacgaccactgatctgtccccca-tcactctgactgtgtcactttgggaatgtcctataaatgga---atcacacagtatgcagccctttgagg------------------------------------atac-ggcttAAAAA----TTTACAGGTAACTCCTTTATCCTCTCTATATGTCTA--TATAAAA-GTATGCATAT-ACATGTTCTCA---GAAGGTCCTGGAAAACA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9433716 619 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6688213 652 - 9870158 I e canFam3.chr26 33124710 487 - 38964690 I e aotNan1.NW_018491581v1 1524306 835 + 5364348 I e cebCap1.NW_016107484v1 2828566 870 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114770332 825 + 124281992 I a score=44760.000000 s hg38.chr12_KI270834v1_alt 25833 4 + 119498 TACA s panTro5.chr12 127312152 4 + 137163284 TACA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125662996 4 + 135337776 TACA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176379 4 - 8369578 TACA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824052 4 + 106955855 TACA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123948914 4 + 133663169 TACA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128196429 4 + 137757926 TACA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10596456 4 - 16319837 TACA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12218410 4 + 20526591 TACA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119190791 4 + 128539186 TACA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 504673 4 + 6255621 TACA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4566441 4 - 8658521 TACA i colAng1.NW_012116043v1 C 0 C 0 s micMur3.chr21 9434335 4 - 31815103 TACA i micMur3.chr21 I 619 C 0 s proCoq1.NW_012154285v1 6688865 4 - 9870158 TACA i proCoq1.NW_012154285v1 I 652 C 0 s otoGar3.GL873618 4257152 4 + 7922563 TACA i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 797300 4 - 1116856 TACA i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124779332 2765 + 151834684 I e canFam3.chr26 33124710 487 - 38964690 I e aotNan1.NW_018491581v1 1524306 835 + 5364348 I e cebCap1.NW_016107484v1 2828566 870 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114770332 825 + 124281992 I a score=617949.000000 s hg38.chr12_KI270834v1_alt 25837 69 + 119498 AAATAGAGAATACTTTTAAC-ATAGAGGGTTGTCACATTGCGTTTCTGCAATATGTCTTTTATTGAAAGC-------- s panTro5.chr12 127312156 69 + 137163284 AAATAGAGAATACTTTTAAC-ATAGAGGGTTGTCACGTTGCGTTTCTGCAATATGTCTTTTATTGAAAGC-------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663000 69 + 135337776 AAATAGAGAATACTTTTAAC-ATAGAGGGTTGTCACGTTGCGTTTCTGCAATATGTCTTTTATTGAAAGC-------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176383 69 - 8369578 AAATAGAGAATACTTTTAAC-ATAGAGGGTTGTCACGTTGCGTTTCTGCAATATGTCTTTTATTGAAAGC-------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824056 69 + 106955855 AAATAGAGAATACTTTTAAC-ATGGAGGGTTGTCACATTGTGTTTCTGCAATATGTTCTTTATTGAAAGC-------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123948918 69 + 133663169 AAATAGAGAATACTTTTAAC-ATAGAGGGTTGTCACATTGCGTTTCTGCAATATGTCTTTTATTGAAAGC-------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128196433 69 + 137757926 AAATAGAGAATACTTTTAAC-ATAGAGGGTTGTCACATTGCGTTTCTGCAATATGTCTTTTATTGAAAGC-------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10596460 69 - 16319837 AAATAGAGAATACTTTTAAC-ATAGAGGGTTGTCACATTGCGTTTCTGCAATATGTCTTTTATTGAAAGC-------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12218414 69 + 20526591 AAATAGAGAATACTTTTAAC-ATAGAGGGTTGTCACATTACGTTTCTACAATATGTCTTTTATTGAAAGC-------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119190795 67 + 128539186 AAATAGAGAATACTTTCAAC---AGAAGGTTGTCACATTGCGTTTCTGCAATATGTCTTTTCTTGAAAGC-------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 504677 69 + 6255621 AAATAGAGAATACTTTTAAC-ATAGAGGGTTGTCACATTGCGTTTCTGCAATATGTCTTTTATTGAAAGC-------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4566445 69 - 8658521 AAATAGAGAATACTTTTAAC-ATAGAGGGTTGTCACGTTGCATTTCTGCAATATGTCTTTTATTGAAAGC-------- i colAng1.NW_012116043v1 C 0 C 0 s micMur3.chr21 9434339 69 - 31815103 AAACAGAGAATGCTTTTACC-ATAAAGGGTTGTCATGTTGCTTTCCTGCAATATATATTTTATTGGAAGC-------- i micMur3.chr21 C 0 I 3417 s proCoq1.NW_012154285v1 6688869 67 - 9870158 AAATAGAGAATACTTTTAAC-ATAAAGGGTTGTTACGTTGCTTTCCTGCA--ATGTGTTTTATTGGAAGC-------- i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4257156 68 + 7922563 AAATTGTGAATACTTTTAAC-ATAAAGAGTTATTATGTTAC-TGCCTGCAATATATATTTTATTGAATGC-------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33125197 64 - 38964690 AAATAGCAAGTGCTTTCAAC-ACAAAGGGTTGTGAGGTCTCTTTTCTGTAAT-----TTTTTAAAAAGGC-------- i canFam3.chr26 I 487 C 0 s dasNov3.JH568189 797304 68 - 1116856 AAGTAACCTATACTTTTAACAAAAAAGGAGTGTTAGATTGCTTTTCTGCAA----------ATTAAAAAAAAAAAGAC i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124779332 2765 + 151834684 I e aotNan1.NW_018491581v1 1524306 835 + 5364348 I e cebCap1.NW_016107484v1 2828566 870 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114770332 825 + 124281992 I a score=822422.000000 s hg38.chr12_KI270834v1_alt 25906 118 + 119498 TCTTGGTGCCTATTACCGTGTCAGGATTTTGAGTTGGCACGATGAGATCTCTTGTTCCTAGTTTTCACGACTAAAATTGCC-ACACTT-GCCTTAGAGAC---CTGTGGGTT-TTGAACCCTTG s panTro5.chr12 127312225 118 + 137163284 TCTTGGTGCCTATTACCGTGTCAGGATTTTGAGTTGGCACGATGAGATCTCTTGTTCCTAGTTTTCACGACTAAAATTGCC-ACACTT-GCCTTAGAGAC---CTGTGGGTT-TTGAACCCTTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663069 118 + 135337776 TCTTGGTGCCTATTACCGTGTCAGGATTTTGAGTTGGCACGATGAGATCTCTTGTTCCTAGTTTTCACGACTAAAATTGCC-ACACTT-GCCTTAGAGAC---CTGTGGGTT-TTGAACCCTTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176452 118 - 8369578 TCTTGGTGCCTATTACCATGTCAGGATTTTGAGTTGGCACGATGAGATCTCTTGTTCCTAGTTTTCACGACTAAAATTGCC-ACACTT-GCCTTAGAGAC---CTGTGGGTT-TTGAACCCTTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824125 118 + 106955855 TCTTGGTGCCTATTACTGTGTCAGGATTTTGAGTTGGCATAATGAGATCTCTTGTTCCTAGTTTTTCTGACTAAAATTGCC-ACACTT-GCGTTAGATAC---CTGTGGGTT-TTGAACCCTTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123948987 118 + 133663169 TCTTGGTGCCTATTACTGCGTCAGGATTTTGAGGTGGCATGACGAGATCTCTTGCTCCTAGATTTTATGACTAAAATTGCC-ACACTT-GCCTTAGGGAC---CTGTGGGTT-TTGAATGCTTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128196502 118 + 137757926 TCTTGGTGCCTATTACTGCGTCAGGATTTTGAGGTGGCATGACGAGATCTCTTGCTCCTAGTTTTTATGACTAAAATTGCC-ACACTT-GCCTTAGGGAC---CTGTGGGTT-TTGAATGCTTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10596529 118 - 16319837 TCTTGGTGCCTATTACTGCGTCAGGATTTTGAGGTGGCATGATGAGATCTCTTGCTCCTAGTTTTTATGACTAAAATTGCC-ACACTT-GCCTTAGGGAC---CTGTGGGTT-TTGAATGCTTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12218483 120 + 20526591 TCTTGGTGCCTATTACTGCGTCAGGATTTTGAGGTGGCATGACGAGATCTCTTGCTCCTAGTTTTTATGACTAAAATTGCC-ACACTTGGCCTTACGGAC---CTGTGGTTTGGTGAACGCTTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119190862 118 + 128539186 TCTTGGTGCCTATTACTGCGTCAGGATTTTGAGGTGGCGTGACGAGATCTCTTGTTCCTAGTTTTTATGACTAAAATTGCC-ACACTT-GCCTTAGGGAC---CTGTGGGTT-TTGAACGCTTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 504746 118 + 6255621 TCTTGGTGCCTATTACTGCGTCAGGATTTTGAGGTGGCATGATGAGATTTCTTGCTCCTAGTTTTTATGACTAAAATTGCC-ACACTT-GCCTTAGGGAC---CTGTGGGTT-TTGAACGCTTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4566514 118 - 8658521 TCTTGGTGCTTATTACTGTGTCAGGATTTTGAGATGGCATGATGAGATCTCTTGTTCCTAGTTTTTATGACTGAAATTGCT-ACACTT-GCCTTAGGGAC---ATGTGGGTT-TTGAACGCTTG i colAng1.NW_012116043v1 C 0 C 0 s proCoq1.NW_012154285v1 6688936 113 - 9870158 ACCTGCTGCCTGTT-----GTGAGGCCTTTGAGTCAGTGGGATGAGATCTCGTGTTCGTAGTTTTTATGACTAAGATTCCC-ACACCT-GCCTCAGGGAC---CAGTGGGCT-TTGAGTCCTTG i proCoq1.NW_012154285v1 C 0 I 42 s otoGar3.GL873618 4257224 106 + 7922563 TCTTGTTAACTCTT-----GTCAGGATTTTGAGTCA----GATGAGATCTCTTGTTC----TTTTTATGACTAAAAGACCCTGTGCCT-GCCTTAGGAAC---CAGTGGGCT-TTGAATCCCTG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33125261 102 - 38964690 TTTTGCTGCTTG-CATGTTGTCTGGATTTTAAACAGGAGTGGTGGGATCTCTGGTTCTTAGTCCTCATG----------CC-A------TCCTTAGGGAG---CAGCAGGCT-TTGAATCATTG i canFam3.chr26 C 0 I 16 s dasNov3.JH568189 797372 108 - 1116856 TCTTGTCTTCTGCCATATCATCGGCATTTTGATTTAGGGCGG-------------TTCTTGTTTTCATTTCCAAAGTGCCC-ATGCCA-GTGCCGGGGACAAGAAGCAGGTT-TTCGGTCCTTA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e aotNan1.NW_018491581v1 1524306 835 + 5364348 I e cebCap1.NW_016107484v1 2828566 870 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114770332 825 + 124281992 I a score=236965.000000 s hg38.chr12_KI270834v1_alt 26024 31 + 119498 CCATAGATG--------------AGGTGGCT-GACTTGTCCTC-AAA s panTro5.chr12 127312343 31 + 137163284 CCATAGATG--------------AGGTGGCT-GACTTGTCCTC-AAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663187 31 + 135337776 CCATAGATG--------------AGGTGGCT-GACTTGTCCTC-AAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176570 31 - 8369578 CCGTAGATG--------------AGGTGGCT-GACTTGTCCTC-AAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824243 31 + 106955855 CCGTAGATG--------------AGGTGGCT-GACTTGTCCTC-AAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949105 31 + 133663169 CTGTAGATG--------------AGGTGGCT-GACTTGTCCTC-AAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128196620 31 + 137757926 CTGTAGATG--------------AGGTGGCT-GACTTGTCCTC-AAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10596647 31 - 16319837 CTGTAGATG--------------AGGTGGCT-GACTTGTCCTC-AAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12218603 33 + 20526591 CTGTAGATG--------------AGGTGGCTGGACTTGTCCTCAAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119190980 31 + 128539186 CTGTAGATG--------------AGGTGGCT-GACTTGTCCTC-AAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 504864 31 + 6255621 CTGTAGATG--------------AGGTGGCT-GACTTGTCCTC-AAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4566632 31 - 8658521 CTGTAGATG--------------ATGTGGCT-GACTTGTCCTC-AAA i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4257330 31 + 7922563 ATGTAGAGT--------------GGGTGGCT-GACTTGTCCTC-AAA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33125379 45 - 38964690 CAGTAGCTACATCAGTAGTCTGTGAGTGGCT-GACTCATCTTG-AAA i canFam3.chr26 I 16 C 0 s dasNov3.JH568189 797480 31 - 1116856 ACATAGATG--------------AGGTGTCT-GACTTGTCCTC-AAA i dasNov3.JH568189 C 0 I 14 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6689049 42 - 9870158 I e aotNan1.NW_018491581v1 1524306 835 + 5364348 I e cebCap1.NW_016107484v1 2828566 870 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114770332 825 + 124281992 I a score=109139.000000 s hg38.chr12_KI270834v1_alt 26055 35 + 119498 GAC-A-TTTAC------AGCC------------------------ttttttttttttttgagatgga s panTro5.chr12 127312374 35 + 137163284 GAC-A-TTTAC------AGCC------------------------ttttttttttttttgagatgga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663218 33 + 135337776 GAC-A-TTTAC------AGCC--------------------------ttttttttttttgagatgga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176601 37 - 8369578 GAC-A-TTTAC------AGCC---------ttt-----------tttttttttttttttgagat--a i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824274 41 + 106955855 GAC-A-TTTAC------AGTC-------ttttt-----------tttttttttttttttgagacaag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949136 42 + 133663169 GAC-A-TTTAC------AGCC-------tttttg----------ttttttgttttttctgagacaga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128196651 42 + 137757926 GAC-A-TTTAC------AGCC-------tttttg----------ttttttgttttttctgagacaga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10596678 49 - 16319837 GAC-A-TTTAC------AGCCtttttgttttttg----------ttttttgttttttttgagacaga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12218636 42 + 20526591 GAC-ATTTTAC------AGCC-------ttttt-----------tttttttttttttttgagacaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191011 35 + 128539186 GAC-A-TTTAC------AGCC------------------------ttttttttttttttgagacaga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 504895 42 + 6255621 GAC-A-TTTAC------AGCC-------tttttt----------tttttttttttttttgagacaga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4566663 38 - 8658521 GAC-A-CTTAC------GGCC-------tt--------------tttttttttttttttgagacaga i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4257361 7 + 7922563 CTC-A-GTT---------------------------------------------------------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33125424 59 - 38964690 AATGA-GTTACAGGAGAAGCT-------tttttaatttaaagattttatttatttatttgagagaga i canFam3.chr26 C 0 I 199 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6689049 42 - 9870158 I e dasNov3.JH568189 797511 14 - 1116856 I e aotNan1.NW_018491581v1 1524306 835 + 5364348 I e cebCap1.NW_016107484v1 2828566 870 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114770332 825 + 124281992 I a score=340081.000000 s hg38.chr12_KI270834v1_alt 26090 62 + 119498 atcttgctctgtcacccaggttggagtgcagtggtgtgatctcagctcactg----------caacctctgt s panTro5.chr12 127312409 62 + 137163284 atcttgctctgtcacccaggttggagtgcagtggtgcgatctcagctcactg----------caacctctgt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663251 62 + 135337776 atcttgctctgtcacccaggttggagagcagtggtgcgatctcagctcactg----------caacctctgt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176638 62 - 8369578 atcttgctctgtcacccaggttggagtgcagtggtgcgatctcagctcactg----------caacctctgt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824315 62 + 106955855 atcttgctctgtcacccaggttggagtgcagtggtgcaatctcagctcactg----------caacctccgc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949178 62 + 133663169 atcttgctctgtcacccaggttggagtgcaatggtgtgatctcagctcactg----------caacctccgc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128196693 62 + 137757926 atcttgctctgtcacccaggttggagtgcaatggtgtgatctcagctcactg----------caacctccgc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10596727 62 - 16319837 atcttgctctgtcacccaggttggagtgcaatggtgtgatctcagctcactg----------caacctccgc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12218678 72 + 20526591 tctttgctctgtcacccaggttggagtgcaatggtgtgatctcagctcactaccctcactgccaacctccac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191046 70 + 128539186 atcttgctctgtcacccaggttggagtgcaatggtgtgatctcagctcacta-cctcactg-caacctccac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 504937 70 + 6255621 atcttgctctgtcacccaggttggagtgcaatggtgtgatctcagctcacta-cctcactg-caccctccac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4566701 62 - 8658521 atcttgctctgtcacccaggttggagtgcaatggtgtgatctcagctcactg----------caacctctgc i colAng1.NW_012116043v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6689049 42 - 9870158 I e dasNov3.JH568189 797511 14 - 1116856 I e canFam3.chr26 33125483 199 - 38964690 I e otoGar3.GL873618 4257368 0 + 7922563 C e aotNan1.NW_018491581v1 1524306 835 + 5364348 I e cebCap1.NW_016107484v1 2828566 870 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114770332 825 + 124281992 I a score=100735.000000 s hg38.chr12_KI270834v1_alt 26152 20 + 119498 ctcccaggttc-aagcggatt s panTro5.chr12 127312471 20 + 137163284 ctcccaggttc-aagcggatt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663313 20 + 135337776 ctcccaggttc-aagcggatt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176700 20 - 8369578 ctcccaggttc-aagcggatt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824377 19 + 106955855 ctcccgggttc-aagc-aatt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949240 19 + 133663169 ctcttgggttc-aagc-gatt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128196755 19 + 137757926 ctcttgggttc-aagc-gatt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10596789 19 - 16319837 ctcttgggttc-aagc-gatt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12218750 20 + 20526591 ctcctgggttcaaagc-gatt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191116 19 + 128539186 ctcctgggttc-aagc-gatt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505007 19 + 6255621 ctcccgggttc-aagc-gatt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4566763 19 - 8658521 ctcctgggttc-aagc-gatt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771157 19 + 124281992 ctcctgggctc-aagt-aatc i calJac3.chr9 I 825 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6689049 42 - 9870158 I e dasNov3.JH568189 797511 14 - 1116856 I e canFam3.chr26 33125483 199 - 38964690 I e otoGar3.GL873618 4257368 0 + 7922563 C e aotNan1.NW_018491581v1 1524306 835 + 5364348 I e cebCap1.NW_016107484v1 2828566 870 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=320466.000000 s hg38.chr12_KI270834v1_alt 26172 36 + 119498 ctcctgcctcagcctcccaagtagctggga-ttatag s panTro5.chr12 127312491 36 + 137163284 ctcctgcctcagcctcccaagtagctggga-ttacag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663333 36 + 135337776 ctcctgcctcagcctcccaagtagctggga-ttacag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176720 36 - 8369578 ctcctgcctcagcctcccaagtagctggga-ttacag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824396 36 + 106955855 ctcctgcctcagcctcccaagtagctggga-ttacag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949259 36 + 133663169 ctcctgcctcagcctcccaagtagctggga-ttacag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128196774 36 + 137757926 ctcctgcctcagcctcccaagtagctggga-ttacag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10596808 36 - 16319837 ctcctgcctcagcctcccaagtagctggga-ttacag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12218770 37 + 20526591 ctcctgcctcagcctcccaagtagctgggacttacag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191135 36 + 128539186 ctcctgcctcagcctcccaagtagctggga-ttacag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505026 36 + 6255621 ctcctgcctcagcctcccaagtagctggga-ttacag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4566782 36 - 8658521 ctcttgcctcagcctcccaaatagctggga-ttacag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771176 36 + 124281992 ctcctcccttagcctcttgagtagctggga-ctgcag i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2829436 36 + 4466143 ctcctccctcagcctcttaagtagctgggc-atacag i cebCap1.NW_016107484v1 I 870 C 0 s aotNan1.NW_018491581v1 1525141 36 + 5364348 ctcctgcctcagcctcttgagtagctggga-ctacag i aotNan1.NW_018491581v1 I 835 C 0 s otoGar3.GL873618 4257368 16 + 7922563 --------------------GTACCTTTAA-TTATAG i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6689049 42 - 9870158 I e dasNov3.JH568189 797511 14 - 1116856 I e canFam3.chr26 33125483 199 - 38964690 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=1330968.000000 s hg38.chr12_KI270834v1_alt 26208 164 + 119498 gcatgcgccaccacgcctg-gctaatttttatatttttagtagagacagggtttca-ccatgttgg-ctaggctggtcttgaactcttgacctcaggtgatccacccacctt-ggcgtcccaaagtgctgggattacaggcatgaacaactatgcttggccCAGTTAC s panTro5.chr12 127312527 164 + 137163284 gcatgcgccaccacgcctg-gctaatttttatatttttagtagagacagggtttca-ccatgttgg-ctaggctggtcttgaactcttgacctcaggtgatccacccacctt-ggcgtcccaaagtgctgggattacaggcgtgaacaactatgcttggccCAGTTAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663369 164 + 135337776 gcatgcgccaccacgcctg-gctaatttttatatttttagtagagacagggtttca-ccatgttgg-ctaggctggtcttgaactcttgacctcaggtgatccacccacctt-ggcgtcccaaagtgctgggattacaggcatgaacaactatgcttggccCAGTTAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176756 164 - 8369578 gcatgcgccaccacgcctg-gctaatttttatatttttagtagagacagggtttcg-ccatgttgg-ctatgctggtcttgaactcttgacctcaggtgatccacccacctt-ggcctcccaaagtgctgggattacaggcatgaacaactatgcttggccCAGTTAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824432 150 + 106955855 gcatgtgccacaacgcctg-gctaatttttatatttttagtagagacagtgtttca-ccatgttgg-ctaggctggtctcgaactcttgacctcaggtgatctacccacctt-ggcctcccaaagtgctgggattacaggcgtgag--------------tcaGTTAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949295 164 + 133663169 gcatatgccaccacgtctg-gttaatttttatatttttagcagagacagggtttca-ccatgttgg-ccaggctggtcttgaactcttgacctcaggtgatgcacccgcctt-ggcctcccaaagtgctgggattacaggcataagtgaccacgcttggccCAGTTAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128196810 164 + 137757926 gcatatgccaccacgtctg-gttaatttttatatttttagcagagacagggtttca-ccatgttgg-ccaggctggtcttgaactcttgacctcaggtgatgcacccgcctt-ggcctcccaaagtgctgggattacaggcataagtgaccacgcttggccCAGTTAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10596844 164 - 16319837 gcatatgccaccacgtctg-gttaatttttatatttttagcagagacagggtttca-ccatgttgg-ccaggctggtcttgaactcttgacctcaggtgatgcacccgcctt-ggcctcccaaagtgctgggattacaggcataagtgaccacgcttggccCAGTTAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12218807 166 + 20526591 gcatgtgcca-cacatctgtgttaatttttata-ttttagcagagacagggtttcacccatgttggcccaggctggtcttgaactcttgacctcaggtgatccacccctcttgggcctcccaaagtgctgggattacaggcataagtgaccacgcttggccCAGTTAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191171 164 + 128539186 gcatgtgccaccacatctg-gttaatttttatatttttagcagagacagggtttca-ccatgttgg-ccaggctggtcttgaactcttgacctcaggtgatccacccgcctt-ggcctcccaaagtgctgggattacaggcttaagtgaccatgcttggccCAGTTAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505062 164 + 6255621 gcatgtgccaccacatctg-gttaatttttatatttttagcagagacagggtttca-ccatgttgg-ccaggctggtcttgaactcttgacctcaggtgatccacccgcctt-ggcctcccaaagtgctgggattacaggcataagtgaccacgcttggccCAGTTAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4566818 164 - 8658521 gcatgtgccaccacgtctg-gttagtttttatatttttagcagagacagggtttca-ccatgttgg-ccaggctggtcttgaactcttgacctcaggtgatctacccgcctt-ggcctcccaaagtgctgggattacaggcataagtgaccacgcttggccCAGTTAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771212 164 + 124281992 gtgtgcaccaccactcctg-gctaatttttgtatttttaatagagataggttttcc-ccatattgg-ccaggcacgtctcaaactcctgacctcaggtgatccacccacctt-ggcctcccaaagcgctgggattacaggcatgagccaccacgcctggccCAGTGAC i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2829472 163 + 4466143 gtgtgtaccaccatgcctg-gctaatttttgtatttttaatagagatagggtttcc-ccatgttgg-ctaggctggtctcaaactcctgacctcaggtgatccacccacctc-ggcc-cccaaagcactgggattacaggtgtgagccaccacgcctggccCAGTTAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1525177 164 + 5364348 gtgtgcaccagcactcctg-gctaatttttgtatttttaatagagatagggtttcc-ccatgttgg-ctaggctggtcttgaactcctgacctcagataatccacccacctc-ggcctcccaaagcgctgggattaaaggtgtgagccaccacgcctggccCAGTTAC i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6689049 42 - 9870158 I e dasNov3.JH568189 797511 14 - 1116856 I e canFam3.chr26 33125483 199 - 38964690 I e otoGar3.GL873618 4257384 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M a score=41745.000000 s hg38.chr12_KI270834v1_alt 26372 4 + 119498 AGCC s panTro5.chr12 127312691 4 + 137163284 AGCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663533 4 + 135337776 AGCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176920 4 - 8369578 AGCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824582 4 + 106955855 AGCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949459 4 + 133663169 AGCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128196974 4 + 137757926 AGCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597008 4 - 16319837 AGCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12218973 4 + 20526591 AGCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191335 4 + 128539186 AGCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505226 4 + 6255621 AGCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4566982 4 - 8658521 TGCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771376 4 + 124281992 AGCC i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2829635 4 + 4466143 AGCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1525341 4 + 5364348 AGCC i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 797525 4 - 1116856 AGCC i dasNov3.JH568189 I 14 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6689049 42 - 9870158 I e canFam3.chr26 33125483 199 - 38964690 I e otoGar3.GL873618 4257384 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M a score=43648.000000 s hg38.chr12_KI270834v1_alt 26376 4 + 119498 TTAA s panTro5.chr12 127312695 4 + 137163284 TTAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663537 4 + 135337776 TTAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176924 4 - 8369578 TTAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824586 4 + 106955855 TTAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949463 4 + 133663169 TTAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128196978 4 + 137757926 TTAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597012 4 - 16319837 TTAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12218977 4 + 20526591 TTAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191339 4 + 128539186 TTAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505230 4 + 6255621 TTAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4566986 4 - 8658521 TTGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771380 4 + 124281992 TTAA i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2829639 4 + 4466143 TTAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1525345 4 + 5364348 TTAA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6689091 4 - 9870158 TTAA i proCoq1.NW_012154285v1 I 42 C 0 s dasNov3.JH568189 797529 4 - 1116856 TCAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e canFam3.chr26 33125483 199 - 38964690 I e otoGar3.GL873618 4257384 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M a score=66389.000000 s hg38.chr12_KI270834v1_alt 26380 6 + 119498 TAATAG s panTro5.chr12 127312699 6 + 137163284 TAATAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663541 6 + 135337776 TAATAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176928 6 - 8369578 TAATAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824590 6 + 106955855 TAATAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949467 6 + 133663169 TAATAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128196982 6 + 137757926 TAATAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597016 6 - 16319837 TAATAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12218981 6 + 20526591 TAATAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191343 6 + 128539186 TAATAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505234 6 + 6255621 TAATAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4566990 6 - 8658521 TAATAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771384 6 + 124281992 TCATAG i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2829643 6 + 4466143 TCATAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1525349 6 + 5364348 TTATAG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6689095 6 - 9870158 TAATAG i proCoq1.NW_012154285v1 C 0 C 0 s canFam3.chr26 33125682 6 - 38964690 TAACAT i canFam3.chr26 I 199 C 0 s dasNov3.JH568189 797533 6 - 1116856 TAATAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e otoGar3.GL873618 4257384 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M a score=513875.000000 s hg38.chr12_KI270834v1_alt 26386 47 + 119498 GTTTAGGTCAAAATAAAGAAGCAATGTATTTCTGGAGTGTGATTCCT s panTro5.chr12 127312705 47 + 137163284 GTTTAGGTCAAAATAAAGAAGCAATGTATTTCTGGAGTGTGATTCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663547 47 + 135337776 GTTTAGGTCAAAATAAAGAAGCAATGTATTTCTGGAGTGTGATTCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176934 47 - 8369578 GTTTAGGTCAAAATAAAGAAGCAATGTATTTCTGGAGTGTGATTCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824596 47 + 106955855 GTTTAGGTCAAAATAAAGAAGCAATGTATTTCTGGAGTGTGATTCCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949473 47 + 133663169 GTTTAGGTCAAAGTAAAGCAGCAGTGTATTTCTGGAGTGTGATTCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128196988 47 + 137757926 GTTTAGGTCAAAGTAAAGCAGCAGTGTATTTCTGGAGTGTGATTCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597022 47 - 16319837 GTTTAGGTCAAAGTAAAGCAGCAGTGTATTTCTGGAGTGTGATTCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12218987 47 + 20526591 GTTTAGGTCAAAGTAAAGAAGCAATGTATTTCTGGAGTGTGATTCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191349 47 + 128539186 GTTTAGGTCAAAGTAAAGAAGCAGTGTATTTCTGGAGTGTGATTCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505240 47 + 6255621 GTTTAGGTCAAAGTAAAGAAGCAATGTATTTCTGGAGAGTGATTCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4566996 47 - 8658521 GTTTAGGTCAAAATAAAGAAGCAACGTATTTCTAGAGTGTGATTCCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771390 44 + 124281992 ATTTGGGTCAAAAT-AAGAAGCCATGTATTTCTGGA--GTGATTCCT i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2829649 45 + 4466143 A-TTGGGTCAAAAT-AAGAAGCAATGTATTTCTGGAGCGTGATTCCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1525355 47 + 5364348 GTTTGGGTCAAAATAAAGAAGCAATGTATTTCTGGAGTGTGATTCCT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6689101 44 - 9870158 GCTTAGGTCAAAATAAACA---AGCATATATTTGGAGTGTGCTTACT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4257384 46 + 7922563 GTTTAGGTCCAAATAAGCAGG-AGGATATTTTTTGAGTGACATTGCT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33125688 47 - 38964690 GTTCAGGTCTAAATAAGAAGGAGGCATATTTTTGGAGTGTGGGTGCT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 797539 47 - 1116856 GTTTAGGCCACAGTGAGCAAGAAGCATGTTTTTAAAGTTTGATCACT i dasNov3.JH568189 C 0 I 932 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=11849.000000 s hg38.chr12_KI270834v1_alt 26433 1 + 119498 A s panTro5.chr12 127312752 1 + 137163284 A i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663594 1 + 135337776 A i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176981 1 - 8369578 A i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824643 1 + 106955855 A i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949520 1 + 133663169 A i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197035 1 + 137757926 A i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597069 1 - 16319837 A i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12219034 1 + 20526591 A i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191396 1 + 128539186 A i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505287 1 + 6255621 A i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4567043 1 - 8658521 A i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771434 1 + 124281992 A i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2829694 1 + 4466143 A i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1525402 1 + 5364348 A i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6689145 1 - 9870158 G i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4257430 1 + 7922563 A i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33125735 1 - 38964690 A i canFam3.chr26 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e dasNov3.JH568189 797586 932 - 1116856 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=395199.000000 s hg38.chr12_KI270834v1_alt 26434 40 + 119498 CAGATG--------------GTTCTGTTCTTTAAATTAAGATAGTGAAGATTTT------------ s panTro5.chr12 127312753 40 + 137163284 CAGATG--------------GTTCTGTTCTTTAAATTAAGATAGTGAAGATTTT------------ i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663595 40 + 135337776 CAGATG--------------GTTCTGTTCTTTAAATTAAGATAGTGAAGATTTT------------ i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8176982 40 - 8369578 CAGATG--------------GTTCTGTTCTTTAAATTAAGATAGTGAAGATTTT------------ i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824644 35 + 106955855 CAAATG--------------GTTCTATTCT-----TTAAGATGGTGAAGATTTT------------ i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949521 40 + 133663169 CAAATG--------------ATTCTGTTCTTTAAATTAAGATGGTGAAGATTTT------------ i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197036 40 + 137757926 CAAATG--------------ATTCTGTTCTTTAAATTAAGATGGTGAAGATTTT------------ i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597070 40 - 16319837 CAAATG--------------ATTCTGTTCTTTAAATTAAGATGGTGAAGATTTT------------ i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12219035 40 + 20526591 CAAATG--------------GTTCTGTTCTTTAAATTAAGATGTTGAAGATTTT------------ i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191397 40 + 128539186 CAAATG--------------GTTCTGTTCTTTAAATTAAGATGGTGAAGATTTT------------ i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505288 40 + 6255621 CAAATG--------------GTTCTGTTCTTTAAATTAAGATAGTGAAGATTTT------------ i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4567044 40 - 8658521 CAAACG--------------GTTCTGTTCTTTAAATTAAGATGGTGAAGATTTT------------ i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771435 40 + 124281992 CAATTG--------------GTTCTGTTCTTTAACTTAAGGTCGCGAGGATTTT------------ i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2829695 37 + 4466143 CAATTG--------------GTTCTGTTCTTTAACGTAAGGT---GGTGATTTT------------ i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1525403 40 + 5364348 CAATTA--------------GTTCTGTTCTTTAAATTAAGGTGGTGAAGATTTT------------ i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6689146 40 - 9870158 CGGCGG--------------GTTCTGTTCTTTAAATCAAGGTGGTTAAGATTTT------------ i proCoq1.NW_012154285v1 C 0 I 52 s otoGar3.GL873618 4257431 39 + 7922563 TGGTGG--------------GTT-TGCTCTTTACATTAAGGTGGTTAAGATCCT------------ i otoGar3.GL873618 C 0 I 31 s canFam3.chr26 33125736 53 - 38964690 TGATTTAAAAAGTTGGATGCGTTTTATTCT-TAAGCTAAGGCAGTGAAGATCAT------------ i canFam3.chr26 C 0 I 31 s dasNov3.JH568189 798518 52 - 1116856 CAAAAG--------------ATTCTGTTCTTTCCATTAAGGAGATTAAGATTTCCCCTGGCTTTTT i dasNov3.JH568189 I 932 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=184641.000000 s hg38.chr12_KI270834v1_alt 26474 20 + 119498 GGTAACACA---------GATGTTTCTTC s panTro5.chr12 127312793 20 + 137163284 GGTAACACA---------GATGTTTCTTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663635 20 + 135337776 GGTAACACA---------GATGTTTCTTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177022 20 - 8369578 GGTAACACA---------GATGTTTCTTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824679 20 + 106955855 GGTAACACA---------GATGTTTCTTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949561 20 + 133663169 GGTAACACA---------GATGTTCCTTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197076 20 + 137757926 GGTAACACA---------GATGTTCCTTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597110 20 - 16319837 GGTAACACA---------GATGTTCCTTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12219075 20 + 20526591 GGTAACACA---------GATGTTCCTTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191437 20 + 128539186 GGTAACACA---------GATGTTCCTTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505328 20 + 6255621 GGTAACACA---------GATGTTCCTTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4567084 20 - 8658521 GGTAACACA---------GATGTTCCTTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771475 20 + 124281992 GGTAACACA---------GATGTTCCTTT i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2829732 20 + 4466143 GGTAACACA---------AATATTCCTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1525443 20 + 5364348 GGTAACACA---------GATGTTCCTTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4257501 20 + 7922563 GCAAAGCCA---------GGTATTCTTTA i otoGar3.GL873618 I 31 C 0 s canFam3.chr26 33125820 20 - 38964690 AGCAAGACT---------GGCATTCTTTG i canFam3.chr26 I 31 C 0 s dasNov3.JH568189 798570 25 - 1116856 GGAGAGTCATCAAATTTTGGTATTT---- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e proCoq1.NW_012154285v1 6689186 52 - 9870158 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=529697.000000 s hg38.chr12_KI270834v1_alt 26494 40 + 119498 AAATTAGTTCCCAATTTGCCATATTTAAAAATGAAGGACC s panTro5.chr12 127312813 40 + 137163284 AAATTAGTTCCCAATTTGCCATATTTAAAAATGAAGGACC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663655 40 + 135337776 AAATTAGTTCCCAATTTGCCATATTTAAAAATGAAGGACC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177042 40 - 8369578 AAATTAGTTCCCAATTTGCCATATTTAAAAATGAAGGACC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824699 40 + 106955855 AAATTAGTTCCCAATTTGCCATATTTAAAAATGAAGGACC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949581 40 + 133663169 ACATTAATTCCCAATTTGCCATATTTAAAAATGAAGGACC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197096 40 + 137757926 ACATTAATTCCCAATTTGCCATATTTAAAAATGAAGGACC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597130 40 - 16319837 ACATTAATTCCCAATTTGCCATATTTAAAAATGAAGGACC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12219095 40 + 20526591 ACATTAATTTCCAATTTGCCATATTTAAAAATGAAGGACC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191457 40 + 128539186 ACATTAATTCCCAATTTGCCATATTTAAAAATGAAGGACC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505348 40 + 6255621 ACATTAATTCCCAATTTGCCATATTTAAAAATGAAGGACC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4567104 40 - 8658521 ACATTAATTCCCAATTTGCCATATTTAAAAATGAAGGACC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771495 40 + 124281992 AAAGTAGTTCCGAATTTGCCATATTTAAAAATGAAGGACC i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2829752 40 + 4466143 AAATTAGTTCCCAATTTGCCGTATTTAAAAATGAAGGACC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1525463 40 + 5364348 AAATTAGTTCTCAATTTGCCATATTTAAAAATGAGGGACC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6689238 40 - 9870158 AAATTAGTTCCCAATTTGCCGTGGTTAAAAACGAAGGACC i proCoq1.NW_012154285v1 I 52 C 0 s otoGar3.GL873618 4257521 40 + 7922563 AAATTAGTTCCCAGTTTGCCATAGTTAAGAAAGAAGGACC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33125840 40 - 38964690 AAATTAGTTCCTAATTTGTCATCATTGAAAACAAAGGACC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 798595 40 - 1116856 AATTTAATTCCTGATTTGTAATAGTTAAAAACTAAGGGTC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124779332 2765 + 151834684 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=922672.000000 s hg38.chr12_KI270834v1_alt 26534 83 + 119498 CACCCTGGTATTTCTGGAAGTT-AGAGAT-GGAATTTGC-----TTATT--TGTAGAGCAGCTGCACTGGA-ACACC--TG---CCCCCG----TTTTCTTG s panTro5.chr12 127312853 83 + 137163284 CACCCTGGTATTTCTGGAAGTT-AGAGAC-GGAATTTGC-----TTATT--TGTAGAGCAGCTGCACTGGA-ACACC--TG---CCCCCG----TTTTCTTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663695 83 + 135337776 CACCCTGGTATTTCTGGAAGTT-AGAGAC-GGAATTTGC-----TTATT--TGTAGAGCAGCTGCACTGGA-ACACC--TG---CCCCCG----TTTTCTTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177082 83 - 8369578 CACCCTGGTATTTCTGGAAGTT-AGAGAC-GGAATTTGC-----TTGTT--TGTAGAGCAGCTGCACTGGA-ACACC--TG---CCCCCG----TTTTCTTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824739 83 + 106955855 CACCCTGGTATTTCTGAAAGTT-AGAGAC-GGAATTTGC-----TTATT--TGTAGAGCAGCTGCACTGGA-ACACC--TG---CCCCCG----TTTTCTTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949621 83 + 133663169 CACCCTGGTATTTCTGAAAGTT-AGAGAC-AGAATTTGC-----TTATT--TGTAGAGCGGCTGCACTGGA-ACACC--TG---CCCCTG----TTTTCTTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197136 83 + 137757926 CACCCTGGTATTTCTGAAAGTT-AGAGAC-GGAATTTGC-----TTATT--TGTAGAGCGGCTGCACTGGA-ATACC--TG---CCCCTG----TTTTCTTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597170 83 - 16319837 CACCCTGGTATTTCTGAAAGTT-AGAGAC-GGAATTTGC-----TTATT--TGTAGAGCGGCTGCACTGGA-GCACC--TG---CCCCTG----TTTTCTTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12219135 83 + 20526591 TACCCTGGTATTTCTGAAAGTT-AGAGAC-AGAATTTGC-----TTATT--TGTAGAGCAGCTGCACTGGA-ACACC--TG---CCCCTG----TTTTCTTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191497 84 + 128539186 TACCCTGGTATTTCTGAAAGTTAAGAGAC-AGAATTTGC-----TTATT--TGTAGAGCGGCTGCACTGGA-ACACC--TG---CCCCTG----TTTTCTTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505388 83 + 6255621 CACCCTGGTATTTCTGAAAGTT-AGAGAC-GGAATTTGC-----TTATT--TGTAGAGCGGCTGCACTGGA-ACACC--TG---CCCCTG----TTTTCTTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4567144 83 - 8658521 CACCCTGGTATTTCTGAAAGAT-AGAGAC-GGAATTTGC-----TTATT--TGTAGAGCGGCTGCACTGGA-ACACC--TG---CCCCTG----TTTTCTTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771535 81 + 124281992 CACCCCGGTGTTTCTGAAAGTT-AGACAT-GAAATTTGC------TGTT--TGTAGAGCAGCTACGCTGGA-ACGCC--CG----CACCG----TTTTCTTG i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2829792 81 + 4466143 CACCCTGGTATTTCTGAAAGTT-AGAGAC-GGAATTTGC------TATT--TGTAGAGCCGCTATGCTGGA-ACGCC--TG----CGCTG----TTTTATTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1525503 82 + 5364348 CACCCAGGTATTTCTGAAAGTT-AGAGAT-GAAATTTGC-----TTATT--TGCAGAGCAGCTACGCTGGA-ACGCC--TG----CACTG----TTTTCTTG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6689278 81 - 9870158 CA-CCTGGAATTTCTGAGCATT-AGAGA--CAGATTTGC-----TTATT--TATAGAACAGCTTCCCTGGA-ACATT--TG---CACCCA----TTTTCTTG i proCoq1.NW_012154285v1 C 0 I 73 s otoGar3.GL873618 4257561 82 + 7922563 CA-CCTGGTATTTCTGGACGTT-GGCGAC-CAGATTTGC-----TTATT--TAAGGAGTAGCTACATTGGA-ACATC--TG---TATTGA----TTTTCTTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124782097 95 + 151834684 CACCCTGGTGTTTTCGAACGCT-GAAGAC-CAGCTCTGCTGATCTTGTC--TGTAGCTTAGTGTCCCTGGG-ATACC--TGTATCCCTTGGTATTTACCGTG i mm10.chr5 I 2765 I 7 s canFam3.chr26 33125880 78 - 38964690 CATCCTGGTGTTTCT----CTT-AGAGGCAAGGGTCTGC-----TTGTT--TATAGAGCAGTTCCATTGAACAATTT--TA---TGTCCA----TTTTC--- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 798635 82 - 1116856 CACCCTGGTATTTCTGAAAATT-AGAGGC-AAGATTTGC-----TTATCTATATAGAGCAGCT----TTGA-ACACCTTTA---TGTCCA----TTTCCAT- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=586879.000000 s hg38.chr12_KI270834v1_alt 26617 75 + 119498 CATTTGTAGAATGATGCT--CCATTGC-TTTTGAATCAttttctttttt-c--tttttttttgtattattATCTTCTATCA s panTro5.chr12 127312936 75 + 137163284 CATTTGTAGAATGATGCT--CCATTGC-TTTTGAATCAttttctttttt-c--tttttttttgtattattATCTTCTATCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663778 75 + 135337776 CATTTGTAGAATGATGCT--CCATTGC-TTTTGAATCAttttctttttt-c--tttttttttgtattattATCTTCTATCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177165 76 - 8369578 CATTTGTAGAATGATGCT--CCATTGC-TTTTGAATCAttttcttttttgt--tttttttttgtattattATCTTCTATCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824822 75 + 106955855 CATTTGTAGAATGATGCT--CCGTTGC-TTTTGAATCATTTTATTTTAT-C--TTACTTTTTGTATTATTATCTTCTATCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949704 76 + 133663169 CATTTGTAGAATGATCCT--CTGTTGC-TTTTGAATCATTTTATTTTAT-C-TTTTTTTTTTGTATTATTATCTTCTTTCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197219 76 + 137757926 CATTTGTAGAATGATCCT--CTGTTGC-TTTTGAATCATTTTATTTTAT-C-TTTTTTTTTTGTATTATTATCTTCTTTCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597253 75 - 16319837 CATTTGTAGAATGATCCT--CTGTTGC-TTTTGAATCATTTTATTTTAT-C--TTTTTTTTTGTATTATTATCTTCTTTCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12219218 76 + 20526591 CATTTGTAGAATGATCCT--CTGTTGC-TTTTGAATCAttttattttat-c-ttttttttttgtattgttatcttctttCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191581 71 + 128539186 CATTTGTAGAATGATCCT--CTGTTGC-TTTTGAGTC-----ATTTTAT-C-TTTTTTTTTTGTATTATTATCTTCTTTCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505471 76 + 6255621 CATTTGTAGAATGATCAT--CTGTTGC-TTTTGAATCATTTTATTTTAT-C-TTTTTTTTTTGTATTATTATCTTCTTTCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4567227 77 - 8658521 CATTTGTAGAATGATCCT--CTGTTGC-TTTTCAATCattttattttat-ctttttttttttgtattgttatcttctttCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771616 73 + 124281992 CATTTGTAGAACGATGTT--CCATTGC-TCTTGAATCATTTTATCTTAT-C-TTCATCTTTT---TCATTCTCTTCTACCA i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2829873 73 + 4466143 CTTTTGTAGAACGATGTT--CCGTTGC-TCTTGAATCGTTTTATTTTAT-C-TTCATTTTTT---TCGTTCTCTTCCACCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1525585 67 + 5364348 CATTTGCAGAATGATGTT--CTGTTGC-TCTTGAATC-----ATTTTAT-C-TTCGT-TTTT---TCATTCTCTTCTACCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4257643 75 + 7922563 TGTTTGTGTAAGAATGTT--ATGTTGCTTTTTGCATCATTTTATTTGAT-G---TAATTTTTCCCCTATGATCTTCCATCA i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124782199 63 + 151834684 CGTTTGCAG-----TGCTAACTGTCAC-TTTC------TCCTATTGTAT-T-----TATGTCTTATCACTGCCTTTGGTTA i mm10.chr5 I 7 C 0 s canFam3.chr26 33125958 66 - 38964690 --TTTGTAGAATGATGTC--CTGTTGC-TTTTAGGTCATTCTCTTTCCT-T-GTTTT--------TCATTATCTTTGATCA i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 798717 59 - 1116856 ----TGTATAGTGATATT--CT-TTGC-CTT-----CACtttattttat-t-----tatttt---ttattatCTTTTATCA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e proCoq1.NW_012154285v1 6689359 73 - 9870158 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=2894739.000000 s hg38.chr12_KI270834v1_alt 26692 186 + 119498 AAAAGACTCTGGCGAAAAAGATGACGGTTCTGTATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAGGTAGGGGCCACGTGCTGGAACATTCTCTGGTT--TC s panTro5.chr12 127313011 186 + 137163284 AAAAGACTCTGGCGAAAAAGATGACGGTTCTGTATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAGGTAGGGGCCACATGCTGGAACATTCTCTGGTT--TC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125663853 186 + 135337776 AAAAGACTCTGGCGAAAAAGATGACGGTTCTGTATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAGGTAGGGGCCACGTGCTGGAACATTCTCTGGTT--TC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177241 186 - 8369578 AAAAGACTCTGGCGAAAAAGATGACGGTTCTGTATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAGGTAGGGGCCACATGCTGGAACATTCTCTGGTT--TC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97824897 186 + 106955855 AAAAGACTCTGGCGAAAAAGATGACGGTTCTATATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAGGTAGGGGCCACGTGCTGGAACATTCTTTGGTT--TC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949780 186 + 133663169 AAAAGACTCTGGCAAAAAAGATGACAGTTCTGTATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAGGTAGGGGCCACGTGCCGGAACATTCTCTGGTT--TC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197295 186 + 137757926 AAAAGACTCTGGCAAAAAAGATGACAGTTCTGTATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAGGTAGGGGCCACGTGCCGGAACATTCTCTGGTT--TC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597328 186 - 16319837 AAAAGACTCTGGCAAAAAAGATGACAGTTCTGTATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAGGTAGGGGCCACATGCCGGAACATTCTCTGGTT--TC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12219294 186 + 20526591 AAAAGACTCTGGCAAAAAAGATGACAGTTCTGTATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAGGTAGGGGCCACGTGCTGGAACATTCTCTGGTT--TC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191652 186 + 128539186 AAAAGACTCTGGCAAAAAAGATGACAGTTCTATACAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAGTCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAGGTAGGGGCCACGTTCTGGAACATTCTCTGGTT--TC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505547 186 + 6255621 AAAAGACTCTGGCAAAAAAGATGACAGTTCTGTATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAGGTAGGGGCCATGTGCTGGAACATTCTCTGGTT--TC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4567304 186 - 8658521 AAAAGACTCTGGCAAAAAAGATGACGGTTCTGTATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAGGTAGGGGCCATGTGCTGGAACATTCTCTGCTT--TC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771689 186 + 124281992 AAAAGACTCTGGCAAAAAAGATGACGGTTCTGTACAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGCACCACTATGATTTTGGACTCAGAGCGCTGAAATCAGTGCTGGTCATGGCTGGCGAGCTGAAGAGAGGCTCCTCCGATCTTAGGGAGGTAGGGGCCACATGCTGGAACATTCTCTGGCT--TC i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2829946 186 + 4466143 AAAAGACTCTGGCAAAAAAGATGACGGTTCTGTACAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGCATCACTATGATTTTGGACTCAGAGCGCTGAAATCAGTGCTGGTCATGGCTGGCGAGCTGAAGAGAGGCTCCTCCGATCTTAGGGAGGTAGGGGCCAGGTGCTGGAACGTTCTCCGGCT--TC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1525652 186 + 5364348 AAAAGACTCTGGCAAAAAAGATGACGGTTCTGTACAAGCTGGCGCGGGAGCAGCTGTCCAAGCAGCACCATTATGATTTTGGACTCAGAGCGCTGAAATCAGTGCTGGTCATGGCTGGCGAGCTGAAGAGAGGCTCCTCTGATCTTAGGGAGGTAGGTGCCAGGTGCTGGAACATTCTCTGGCT--TC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6689432 186 - 9870158 AAAAGACCCTGGCGAAAAAGATGACCGTTCTGTACAAGCTGGCCCGGGAGCAGCTCTCCAAGCAGCATCACTACGATTTCGGACTCAGGGCCCTGAAATCGGTGCTGGTGATGGCTGGCGAGCTGAAGAGAGGCTCCTCTGACCTCAGGGAGGTAGGGACCATGTGCTGGAACATTCTCTGGTT--TC i proCoq1.NW_012154285v1 I 73 I 3934 s otoGar3.GL873618 4257719 186 + 7922563 ATAAGACTCTGGCAAAAAAGATGACGGTCCTGTACAAGCTGGCCCGGGAGCAGCTCTCCAAACAGCATCATTATGATTTTGGACTCAGGGCCTTGAAATCGGTGCTAGTGATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAAAGAGGTAGGAGCCACATGCTGGACCGTTCTTTGGCT--TC i otoGar3.GL873618 I 1 C 0 s mm10.chr5 124782262 178 + 151834684 AAAAGACGCTGGCCAAGAAGATGACAGTTCTCTATAAGCTGGCCCGGGAGCAGCTGTCGAAACAGCACCACTATGACTTTGGGCTCCGGGCCCTGAAGTCAGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCGCAGACCTGCAGGAGGTAGG--CCACTCAGTG------TCTTCGGTT--TT i mm10.chr5 C 0 C 0 s canFam3.chr26 33126025 186 - 38964690 AAAAGACGCTGTCCAAAAAGATGACTGTTCTGTATAAGTTGGCCCGGGAGCAGCTCTCCAAGCAACATCACTATGATTTTGGACTGAGAGCCCTGAAATCCGTATTGGTAATGGCTGGAGAACTGAAGAGAGGCTCTTCTGATCTCAGAGAGGTAGGGGCCATGGACACCGATGTTCTCCAGGT--CT i canFam3.chr26 I 1 I 2 s dasNov3.JH568189 798776 187 - 1116856 AAAAGACTCTGGCCAAAAAGATGACTGTTCTGTATAAGCTGGCCCGGGAGCAGCTCTCCAAGCAGCATCACTATGACTTTGGACTCAGAGCCCTAAAATCAGTGCTGGTCATGGCTGGTGAGCTGAAGAGGGGCTCTGCGGATCTCAAGGAGGTAGGGG-CACACGCACAAACGTTCCCTGATTGGTC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=514415.000000 s hg38.chr12_KI270834v1_alt 26878 64 + 119498 AGCTGCTTCA--GGCATTTACTACGTGCCATTGGGGA----GGTGAT-GGGC-ACAGTATGG------------------------------------------------TA-TCACCTGA s panTro5.chr12 127313197 64 + 137163284 AGCTGCTTCA--GGCATTTACTACGTGCCATTGGGGA----GGTGAT-GGGC-ACAGTATGG------------------------------------------------TA-TCACCTGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664039 64 + 135337776 AGCTGCTTCA--GGCATTTACTACGTGCCATTGGGGA----GGTGAT-GGGC-ACAGTATGG------------------------------------------------TA-TCACCTGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177427 64 - 8369578 AGCTGCTTCA--TGTATTTACTACGTGCCGTTGGGGA----GGTGAT-GGGC-ACAGTATGG------------------------------------------------TA-TCACCTGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825083 66 + 106955855 AGCTGGTTCATGTGCATTTACTCCATGCTGTTGGGGA----GGTGAT-GGGC-ACAGTATGG------------------------------------------------TA-TCACCTGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123949966 66 + 133663169 AGCTGGTTCATGTGCATTTACTATGTGCTTTCAGGGA----GGTGAT-GGGC-ACAGTATGG------------------------------------------------TA-TCACCTGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197481 66 + 137757926 AGCTGGTTCATGTGCATTTACTATGTGCTTTCAGGGA----GGTGAT-GGGC-ACAGTATGG------------------------------------------------TA-TCACCTGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597514 66 - 16319837 AGCTGGTTCATGTGCATTTACTATGTGCTTTCAGGGA----GGTGAT-GGGC-ACAGTATGG------------------------------------------------TA-TCACCTGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12219480 66 + 20526591 AGCTGGTTCATGTACATTTACTATGTGCTTTCAGGGA----GGTGAT-GGGC-ACAGTATGG------------------------------------------------TA-TCACCTGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191838 66 + 128539186 AGCTGGTTCATGTGCATTTACTATGTGCTTTCAGGGA----GGTGAT-GGGC-ACAGTATGG------------------------------------------------TA-TCACCTGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505733 66 + 6255621 AGCTGGTTCATGTGCATTTACTATGTGCTTTCAGGGA----GGTGAT-GGGC-ACAGTATGG------------------------------------------------TA-TCACCTGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4567490 66 - 8658521 AGCTGGTTCATGTGCATTTACTATGTGGTTTCGGGGA----GGTGAT-GGGC-ACAGTATGG------------------------------------------------TA-TCACCTGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771875 66 + 124281992 AGCTGGTTCATGCACATTTACTGCCTGCTGCGGGGGA----GGTGCC-GGGC-ACAGTATGG------------------------------------------------TA-TCACCTGA i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2830132 67 + 4466143 AGCTGGTTCATGCACATTTACTACCTGCGGCGGGGGA----GGTGCCGGGGC-ACAGGATGG------------------------------------------------TA-TCACCCGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1525838 66 + 5364348 AGCTGGTTCATGCACATTGACTACCTGCTGCGGGGGA----GGTGGC-GGGC-ACAGTATGG------------------------------------------------TA-TCAGCCGA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4257905 114 + 7922563 ATTTGGATCATGTACACATAATAAATACTGGGATAAA----GGGGAT-AGGT-ACAGTACAGTCCTCGATTGAAAGGCTTTGGGttttttcttgagagaaggtctcgttctg-tcacctgg i otoGar3.GL873618 C 0 I 256 s mm10.chr5 124782440 73 + 151834684 GCGTGGTTCG-GTGCAGTTCCTGTGCATGGGCAGAAGGCATGGCTGC-GGAC-ACGGGGCAG----------------------------------AGCA----------GG-CCACCCGG i mm10.chr5 C 0 C 0 s canFam3.chr26 33126213 66 - 38964690 ATCTGGTTCATGTGTACCTAACAAACACT----GGGA-CATGATGAT-GGACTACAGCATAG------------------------------------------------TGCTCACAAG- i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 798963 64 - 1116856 ACTCAGTTCACGTGTATGGAATAAATTCTGGGATGGA----GATG---GGGT-ATAAAACAG------------------------------------------------TA-TTAATTGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=584988.000000 s hg38.chr12_KI270834v1_alt 26942 60 + 119498 AAGGTTTAAGTCTTAGCTGCCTCTTCACCCC------GCGGT--CTGGCCTTACTTTGGCCTCTTACC s panTro5.chr12 127313261 60 + 137163284 AAGGTTTAAGTCTTAGCTGCCTCTTCACCCC------GCGGT--CTGGCCTTACTTTGGCCTCTTACC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664103 60 + 135337776 AAGGTTTAAGTCTTAGCTGCCTCTTCACCCC------GCGGT--CTGGCCTTACTTTGGCCTCTTACC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177491 60 - 8369578 AAGGTTTGAGTCTTAGCTGCTGCTTCACCCC------GCGGT--CTGGCCTTACTATGGCCTCTTACC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825149 60 + 106955855 AAGGTTTAAGTCTTAGCTGCTGCTTCACCAC------GCTGT--CTGGCCTTACTTCGGCCTCTTACC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123950032 60 + 133663169 AATGTTTAAGTCTTAGCAGCCGCTTCCCCCA------TCGGT--CTGGCCTTACTTTGGCCTCTTACC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197547 60 + 137757926 AATGTTTAAGTCTTAGCAGCTGCTTCCCCCA------TCGGT--CTGGCCTTACTTTGGCCTCTTACC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597580 60 - 16319837 AATGTTTAAGTCTTAGCAGCCGCTTCCCCCA------TCGGT--CTGGCCTTACTTTGGCCTCTTACC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12219546 60 + 20526591 AATGTTTAAGTCTTAGCAGCCGCTTCCCCCA------GCGCT--CTGGCCTTACTTTGGCCTCTTACC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191904 60 + 128539186 AATGTTTAAGTCTTAGCAGCCGCTTCCCCCA------GCGCT--CTGGCCTTACTTCGGCCTCTTACC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505799 60 + 6255621 AATGTTTAAGTCTTAGCAGCCGCTTCCCCCA------GCGCT--CTGGCCTTACTTTGGCCTCTTACC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4567556 60 - 8658521 AATGTTTAAGTCTTAGCAGCCGCTTCCCCCA------GCGGT--CTGGCCTTACTTCGGCCTCTTGCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114771941 60 + 124281992 AAGTGTTAGGTCTCAGCTGCTGCTTCCACCA------TCGGC--CCAGCCTTACTTTGGTCTCTTACC i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2830199 60 + 4466143 AAGTCTTAGGTCTTCGCTGCTGCTTCGCCCA------GCGGC--CTGGCCTTACTTTGGTCTCTTACC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1525904 60 + 5364348 AAGTGTGAGGTCTTAGCTGCTGCTTCGCCCG------GCGGC--CTGGCCTTACTTCGGTCTCTTACC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4258275 60 + 7922563 AAGTTTTAACTCTTAGCTGTCCCTTCATTTA------GTGGT--CTGGTCTTACTTTGATCTCTTTCC i otoGar3.GL873618 I 256 C 0 s mm10.chr5 124782513 58 + 151834684 -AAGCTCAAGTCTTGGCTATC-CCTCCATGA------GCTGT--TTGCCTTTGCTTTGGTCCCCCCCC i mm10.chr5 C 0 I 1247 s canFam3.chr26 33126279 68 - 38964690 AAAGTTTTAGTTTTAGCTGTCACTTCATTTACTTCATTTGGTTGCTGGCCTTAATTGGATCTCTTATT i canFam3.chr26 C 0 I 3 s dasNov3.JH568189 799027 58 - 1116856 CAGTTTCAAGTCCTA-CTGTCACTTCATTTA------TTTTT--CTGGCCTTCATTTGTTCTCTTAC- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=2447513.000000 s hg38.chr12_KI270834v1_alt 27002 262 + 119498 TGTTG-TATCGTTTGC-TTG------TAATTACAC------TTAGTACCTTAAGGTCAAGTGCAATGTCTTCGCTCCAATAGCAACATTTATGATGCTTCCATAGTAAT----AATCTGTAGTCTCAGGATGGGTGTGGCGGAAGGGTGGGGACTAACAAAATTCTCATGAAAGCATGAAGGTGAGTTGTTATTTTCT----------CTTTGAAACAAAA--GAGGGGAACAATTGTG-TTTTTTTTACATGG------ACTTTAAATAAAAGGTTTAGTCAA---TGTTCTGTGGGCAAC s panTro5.chr12 127313321 262 + 137163284 TGTTG-TATCGTTTGC-TTG------TAATTACAC------TTAGTACCTTAAGGTCAAGTACAATGTCTTCGCTCCAATAGCAACATTTATGATGCTTCCATAGTAAT----AATCTGTAGTCTCAGGATGGGTGTGGCGGAAGGGTGGGGACTAACAAAATTCTCATGAAAGCATGAAGGTGAGTTGTTATTTTCT----------CTTTGAAACAAAA--GAGGGGAACAATTGTG-TTTTTTTTACATGG------ACTTTAAATAAAAGGTTTAGTCAA---TGTTCTGTGGGCAAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664163 261 + 135337776 TGTTG-TATCGTTTGC-TTG------TAATTACAC------TTAGTACCTTAAGGTCAAGTACAATGTCTTCGCTCCAATAGCAACATTTATGATGCTTCCATAGTAAT----AATCTGTAGTCTCAGGATGGGTGTGGCGGAAGGGTGGGGACTAACAAAATTCTCATGAAAGCATGAAGGTGAGTTGTTATTTTCT----------CTTTGAAACAAAA--GAGGGGAACAATTGTG--TTTTTTTACATGG------ACTTTAAATAAAAGGTTTAGTCAA---TGTTCTGTGGGCAAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177551 258 - 8369578 TGTTG-TATCATTTGC-TTG------TAATTACAC------TTAGTACCTTAAGGTCAAGTGCAATGTC-TCGCTCCAATAGCAACATTTATGATGCTTCCATAGTAAT----AATCTGTAGTCTCAGGATGGGTGTGGCGGAAGGGTGGGGACTAACAAAATTCTCATGAAAGCATGAATGTGAGTTGTTATTTTCT----------CTTTGAAACAAAA--GAGGGGAACAATTG----TTTTTTTACATGG------ACTTTAAATAAAAGGTTTAGTCAA---TGTTCTGTGGGCAAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825209 263 + 106955855 TGTTA-TATTGTTTGC-TCG------TAATTACAC------TTAGTACCTTAAGGTCAAGTGCAATGTCCTTGCTCCAATAACAACATTTATGATGCTTCCATAGTAATAATCAATCTGTAGTCTCAGGATGGGTGTGGCGGAAGGGTGGGGACTAACAAAATTCTCACGTAAGCGTGAATGTGAGTTGTTATTTTCT----------CTTT-----AAAA--GAGGGGAATGATTGTG-TTTTATTTACATGG------ACTTTAAAGAAAAGGTTTAGTCAA-GTCGTTCTGTGGGCAAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123950092 271 + 133663169 TGTTA-TATCGTTTGCTTTG------TAATTACAC------TTAGTACCTTAAGGTTGAGTGCAACATCCTCACTCCAATACCAACATTTATGATGCTTCCATAGTAATAATCAATCTGTAGTCTCAGGATGGGTGTGGCGGAATGGTGGGGACTAACAAAATTCTCATGAAAGCATGAATGTGAGTTGTTATTTTCT----------CTTTGCAACAAAA--GAGGGGAACGATTGTGGTTGTTTTTACATGG------ACTTTAAAGAAAAAGTTCAGTCAATGCTGTTCTGTGGGCAAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197607 271 + 137757926 TGTTA-TATCGTTTGCTTTG------TAATTACAC------TTAGTACCTTAAGGTTGAGTGCAACATCCTCACTCCAATACCAACATTTATGATGCTTCCATAGTAATAATCAATCTGTAGTCTCAGGATGGGTGTGGCGGAACGGTGGGGACTAACAAAATTCTCATGAAAGCATGAATGTGAGTTGTTATTTTCT----------CTTTGCAACAAAA--GAGGGGAACGATTGTGGTTGTTTTTACATGG------ACTTTAAAGAAAAAGTTCAGTCAATGCTGTTCTGTGGGCAAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597640 271 - 16319837 TGTTA-TATCGTTTGCTTTG------TAATTACAC------TTAGTACCTTAAGGTTGAGTGCAACATCCTCACTCCAATACCAACATTTATGATGCTTCCATAGTAATAATCAATCTGTAGTCTCAGGATGGGTGTGGCGGAACGGTGGGGACTAACAAAATTCTCATGAAAGCATGAATGTGAGTTGTTATTTTCT----------CTTTGCAACAAAA--GAGGGGAACGATTGTGGTTGTTTTTACATGG------ACTTTAAAGAAAAAGTTCAGTCAATGCTGTTCTGTGGGCAAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12219606 271 + 20526591 TGTTA-TATCGTTTGCTTTG------TAATTACAC------TTAGTACCTTAAGGTTGAGTGCAACATCCTCACTCCAATACCAACATTTATGATGCTTCCATAGTAATAATCAATCTGTAGTCTCAGGATGGGTGTGGCGGAACGGTGGGGACTAACAAAATTCTCATGAAAGCATGAATGTGAGTTGTTATTTTCT----------CTTTGCAATAAAA--GAGGGGAACGATTGTGGTTGTTTTTACATGG------ACTTTGAAGAAAAAGTTCAGTCAATGCTGTTCTGTGGGCAAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119191964 271 + 128539186 TGTTA-TATCGTTTGCTTTG------TAATTACAC------TTAGTACCTTAAGGTTGAGTGCAACGTCCTTGCTCCAAAACCAACATTTATGATGCTTCCATAGTAATAATCAATCTGTAGTCTCAGGATGGGTGTGGCGGAATGGTGGGGACTAACAAAATTCTCATGAAAGCATGAATGTGAGTTGTTATTTTCT----------CTTTGCAACAAAA--AAGGGGAACGATTGTGGTTGTTTTTACATGG------ACTTTAAAGAAAAAGTTCAGTCAATGCTGTTCTGTGGGCAAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 505859 271 + 6255621 TGTTA-TATCGTTTGCTTTG------TAATTACAC------TTAGTACCTTAAGGTTGAGTGCAACATCCTCACTCCAATACCAACATTTATGATGCTTCCATAGTAAGAATCAATCTGTAGTCTCAGGATGGGTGTGGCGGAACGGTGGGGACTAACAAAATTCTCATGAAAGCATGAATGTGAGTTGTTATTTTCT----------CTTTGCAACAAAA--CAGGGGAACGATTGTGGTTGTTTTTACATGG------ACTTTGAAGAAAAAGTTCAGTCAATGCTGTTCTGTGGGCAAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4567616 271 - 8658521 TGTTA-CATCGTTTGCTTTG------TAATTACAC------TTAGTACCTTAAGGTTGAGTGCAACGTCCTCGCTCCAATACCAACATTTATGATGCTTCCGTAGTAATAATCAATCTGTAGTCTCAGGATGGGTGTGGCGGAATGGTGGGGACTAACAAAATTCTCATGAAAGCATGAATGTGAGTTGTTATTTTCT----------CTTTGCAACAAAA--GCGGGGAACGATTGTGGTTGTTTTTACATGG------ACTTTAAAGAAAAAGTTCCGTCAATGCTGTTCTGTGGGCAAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114772001 273 + 124281992 TGTTA-TAGCATTTGC-TTG------TAATGATAC------TTGGTACCTTAAGGTCAAGTGCAGCGTCCTCACTCCAGTACCCGCATTTACGATGCTTCCATAGTAATAGTCAGTCTGTAGTTTCAGGAT-GGTGTGGCGGAAGGGTACAGGCTACCAAAATTATCATGGAAGCATGAATGTGAGTTTTTATTTTCT----------CTCTGCAACAAAA--GAGGGGAATGATTGTGTTTGTTTTTACATGGA--TTTACTCTAAAGAAAAGGTTCGGTCAATGCCATTCTGTGGGCAAC i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2830259 271 + 4466143 TGTTA-CAGCATTTGC-TTG------TAATTATAC------TTGGTACCTTAAGGTTGAGTGCAACGTCCTCACTTCAGTACCAGCATTTACGACGCTTCCATAGTAATGATCAGTCTGTAGTCTCAGGAT-GGTGTGGTGGAAGGGTAAAGGCTAACAAAATTCTCATGAAAGCATGAATGTGAGTTTTTATTTTCT----------CTTTGCAACAAA----AGGGGAATGATTGTGTTGGTTTTTACATGGA--TTTACTCTAAAGAAAAGGTTCGGTCAATGCCATTCTGTGGGCAAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1525964 268 + 5364348 TGTGA-TAGCATTTGC-TTG------TAATTATAC------TTGGTACCTTAAGGTCGAGTGCAACGTCCTCACTCCAGTACCAGCATTTACGAGGCTTCCATAGTAATAATCAGTC--TAGTCTCAGGAT-GGTGTGCTGGAGGAGTAAAGACTAACAAAATTCTCATGAAAGCATGAATGTGAGTTTTTATTTTCT----------CTTTGCAACAA-----AGGGGAATGATTGTGTTTGTTTTTACCTGGA--TTTACTCTAAAGAAAAGGTTTAGTCAATGCCATTCTGTGGGCAAC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4258335 264 + 7922563 CATTA-TATCATTTAA-TTC------TAATTAGACTTCGAATTAGTAGCTTCAGGTGAAGTTTAATGTCATC-TTTCAGTACCAACGTGTATGATGCTTCAATAGTAATAGTCAATCTGTAATCTCAGGAT-GGTGAGGTGGGAGGGTGGAGACAAACAAAATTCTTACGAAAGCATAAATGTAAGTTTTCATTTTCT----------CTTTGCACCAAAAACAAGAGGGAAGTTTATG--TGTTTTT------------ACTCTAAAGTGTAAGTTTAGT----GCCATTCCATGGGCAAA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33126350 251 - 38964690 TATTAGTAGTATATGCTTTTTTCCCCTAATTTGAC------TAATTACCAT-AGGTCAAGTTGAATGTCTTC------------ACAACTCTGATGCTTCAGTGGTAATAATCAATCCATAATTGCAGGAT-GGTGGGGTGGAGGGGTGGGGATAAACCCAGTTCTCAAGAAAGCATGAGAATGATTTTTTTTGTTTTTGTTTTTCTGCTTTGCAATAAAA--GTACAGAACTC--------------------------ACTCCAAAGCAGACTTC---TCAGTGCTGCTCTGTGGGCAAC i canFam3.chr26 I 3 C 0 s dasNov3.JH568189 799085 239 - 1116856 --TTA-TATTGTTTTC-TTC------TAATTGGAC------TTATCACTCCAAGGGGAGGT--------------TCAGTGCCACCATTTACAAAACATCAATAATAAT---CCATCAGTAGTGTCAGGAC-AGTGGGGTGGAGGGGTGGGGATAACCCC--CTCTTGCCAAAGCATGTACATGAGTTTT--TTTCCT----------CTTTGTAATAAAA--GCACG------------TTTCTTTCACATGGGACTCTACTCCAAAGCACA-GCTCAGTGAATGCCGTCCTGTGGGCAAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=146507.000000 s hg38.chr12_KI270834v1_alt 27264 14 + 119498 AGGCTTACCTGTTT s panTro5.chr12 127313583 14 + 137163284 AGGCTCACCTGTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664424 14 + 135337776 AGGCTCACCTGTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177809 14 - 8369578 AGGCTCACCTGTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825472 14 + 106955855 AGGCTCACCTGTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123950363 14 + 133663169 AGGCTCACCTGTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197878 14 + 137757926 AGGCTCACCTGTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597911 14 - 16319837 AGGCTCACCTGTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12219877 14 + 20526591 AGGCTCACCTGTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119192235 14 + 128539186 AGGCTCACCTGTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 506130 14 + 6255621 AGGCTCACCTGTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4567887 14 - 8658521 AGGCTCACCTGTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114772274 14 + 124281992 AGGCTCACTTGTTT i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2830530 14 + 4466143 AGGATCACTTGTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1526232 14 + 5364348 AGGCTCACTTGTTT i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33126601 11 - 38964690 AGGCTCACATG--- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 799324 14 - 1116856 AGACTCGTGTGTTT i dasNov3.JH568189 C 0 I 15 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M a score=176544.000000 s hg38.chr12_KI270834v1_alt 27278 18 + 119498 CTCTAGTGACTGTACTCA-- s panTro5.chr12 127313597 18 + 137163284 CTCTAGTGACTGTACTCA-- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664438 18 + 135337776 CTCTAGTGACTGTACTCA-- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177823 18 - 8369578 CTCTAGTGACTGTACTCA-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825486 18 + 106955855 CTCTAGTGACTGTACTCA-- i nomLeu3.chr10 C 0 I 2 s rheMac8.chr11 123950377 18 + 133663169 CTCTAGTGACTGTACTCA-- i rheMac8.chr11 C 0 I 28 s macFas5.chr11 128197892 18 + 137757926 CTCTAGTGACTGTACTCA-- i macFas5.chr11 C 0 I 2 s macNem1.NW_012010578v1 10597925 18 - 16319837 CTCTAGTGACTGTACTCA-- i macNem1.NW_012010578v1 C 0 I 28 s cerAty1.NW_012001186v1 12219891 18 + 20526591 CTCTAGTGACTGTACTCA-- i cerAty1.NW_012001186v1 C 0 I 350 s chlSab2.chr11 119192249 18 + 128539186 CTCTAGTGACTGTACTCA-- i chlSab2.chr11 C 0 I 18 s manLeu1.NW_012103587v1 506144 18 + 6255621 CTCTAGTGACTGTACTCA-- i manLeu1.NW_012103587v1 C 0 I 8 s colAng1.NW_012116043v1 4567901 18 - 8658521 CTCTAGTGACTGTACTCA-- i colAng1.NW_012116043v1 C 0 I 2 s calJac3.chr9 114772288 18 + 124281992 CTCTAGTGATGGTAATCA-- i calJac3.chr9 C 0 I 2 s cebCap1.NW_016107484v1 2830544 18 + 4466143 CTCTAGTGATTGTACTCA-- i cebCap1.NW_016107484v1 C 0 I 2 s aotNan1.NW_018491581v1 1526246 18 + 5364348 CTCTAGTGATTGTACTCA-- i aotNan1.NW_018491581v1 C 0 I 2 s canFam3.chr26 33126612 19 - 38964690 -TCTAGAGACTGTACTTTCA i canFam3.chr26 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M a score=22158.000000 s hg38.chr12_KI270834v1_alt 27296 5 + 119498 ATGTT s panTro5.chr12 127313615 5 + 137163284 ATGTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664456 5 + 135337776 ATGTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177841 5 - 8369578 GTGTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825506 5 + 106955855 ATGTT i nomLeu3.chr10 I 2 I 2 s macFas5.chr11 128197912 5 + 137757926 ATGTT i macFas5.chr11 I 2 C 0 s colAng1.NW_012116043v1 4567921 5 - 8658521 ATGTT i colAng1.NW_012116043v1 I 2 C 0 s calJac3.chr9 114772308 5 + 124281992 GTGTT i calJac3.chr9 I 2 C 0 s cebCap1.NW_016107484v1 2830564 5 + 4466143 GTGTT i cebCap1.NW_016107484v1 I 2 C 0 s aotNan1.NW_018491581v1 1526266 5 + 5364348 GTGTT i aotNan1.NW_018491581v1 I 2 C 0 s canFam3.chr26 33126631 5 - 38964690 ATGTT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M e manLeu1.NW_012103587v1 506162 8 + 6255621 I e chlSab2.chr11 119192267 18 + 128539186 I e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e rheMac8.chr11 123950395 28 + 133663169 I a score=6573.000000 s hg38.chr12_KI270834v1_alt 27301 5 + 119498 gcacg s panTro5.chr12 127313620 5 + 137163284 gcacg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664461 5 + 135337776 gcacg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177846 5 - 8369578 GCACG i gorGor5.CYUI01015152v1 C 0 C 0 s macFas5.chr11 128197917 5 + 137757926 ACACA i macFas5.chr11 C 0 C 0 s colAng1.NW_012116043v1 4567926 3 - 8658521 aca-- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114772313 5 + 124281992 acaca i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2830569 5 + 4466143 acaca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1526271 5 + 5364348 acaca i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33126636 5 - 38964690 TTATG i canFam3.chr26 C 0 I 8 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M e manLeu1.NW_012103587v1 506162 8 + 6255621 I e chlSab2.chr11 119192267 18 + 128539186 I e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e rheMac8.chr11 123950395 28 + 133663169 I e nomLeu3.chr10 97825511 2 + 106955855 I a score=8267.000000 s hg38.chr12_KI270834v1_alt 27306 4 + 119498 caca s panTro5.chr12 127313625 4 + 137163284 caca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664466 4 + 135337776 caca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177851 4 - 8369578 CACA i gorGor5.CYUI01015152v1 C 0 C 0 s macFas5.chr11 128197922 4 + 137757926 CACG i macFas5.chr11 C 0 C 0 s calJac3.chr9 114772318 4 + 124281992 gaca i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2830574 4 + 4466143 caca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1526276 4 + 5364348 caca i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4567929 0 - 8658521 C e manLeu1.NW_012103587v1 506162 8 + 6255621 I e chlSab2.chr11 119192267 18 + 128539186 I e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e rheMac8.chr11 123950395 28 + 133663169 I e nomLeu3.chr10 97825511 2 + 106955855 I a score=5348.000000 s hg38.chr12_KI270834v1_alt 27310 2 + 119498 ca s panTro5.chr12 127313629 2 + 137163284 ca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664470 2 + 135337776 ca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177855 2 - 8369578 CA i gorGor5.CYUI01015152v1 C 0 C 0 s colAng1.NW_012116043v1 4567929 2 - 8658521 ca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114772322 2 + 124281992 ca i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2830578 2 + 4466143 ca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1526280 2 + 5364348 ca i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M e manLeu1.NW_012103587v1 506162 8 + 6255621 I e chlSab2.chr11 119192267 18 + 128539186 I e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e macFas5.chr11 128197926 0 + 137757926 C e rheMac8.chr11 123950395 28 + 133663169 I e nomLeu3.chr10 97825511 2 + 106955855 I a score=21236.000000 s hg38.chr12_KI270834v1_alt 27312 14 + 119498 cgcacgcacacaca s panTro5.chr12 127313631 14 + 137163284 tgcacgcacacaca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664472 14 + 135337776 tgcacgcacacaca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177857 14 - 8369578 CGCACACACGCACG i gorGor5.CYUI01015152v1 C 0 C 0 s colAng1.NW_012116043v1 4567931 14 - 8658521 cgcgcgcacacaca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114772324 14 + 124281992 gacacacacacaca i calJac3.chr9 C 0 C 0 s aotNan1.NW_018491581v1 1526282 14 + 5364348 cacacgcacacaca i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e cebCap1.NW_016107484v1 2830580 0 + 4466143 C e saiBol1.JH378194 414265 7043 - 9212255 M e manLeu1.NW_012103587v1 506162 8 + 6255621 I e chlSab2.chr11 119192267 18 + 128539186 I e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e macFas5.chr11 128197926 0 + 137757926 C e rheMac8.chr11 123950395 28 + 133663169 I e nomLeu3.chr10 97825511 2 + 106955855 I a score=2345.000000 s hg38.chr12_KI270834v1_alt 27326 2 + 119498 cg s panTro5.chr12 127313645 2 + 137163284 cg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664486 2 + 135337776 cg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177871 2 - 8369578 CG i gorGor5.CYUI01015152v1 C 0 C 0 s colAng1.NW_012116043v1 4567945 2 - 8658521 cg i colAng1.NW_012116043v1 C 0 C 0 s aotNan1.NW_018491581v1 1526296 2 + 5364348 ca i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e cebCap1.NW_016107484v1 2830580 0 + 4466143 C e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114772338 0 + 124281992 C e manLeu1.NW_012103587v1 506162 8 + 6255621 I e chlSab2.chr11 119192267 18 + 128539186 I e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e macFas5.chr11 128197926 0 + 137757926 C e rheMac8.chr11 123950395 28 + 133663169 I e nomLeu3.chr10 97825511 2 + 106955855 I a score=4606.000000 s hg38.chr12_KI270834v1_alt 27328 8 + 119498 cacacgca s panTro5.chr12 127313647 8 + 137163284 cacacgca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664488 8 + 135337776 cacacgca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177873 5 - 8369578 CACAC--- i gorGor5.CYUI01015152v1 C 0 C 0 s aotNan1.NW_018491581v1 1526298 8 + 5364348 cacacGCA i aotNan1.NW_018491581v1 C 0 I 21 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e cebCap1.NW_016107484v1 2830580 0 + 4466143 C e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114772338 0 + 124281992 C e colAng1.NW_012116043v1 4567947 0 - 8658521 C e manLeu1.NW_012103587v1 506162 8 + 6255621 I e chlSab2.chr11 119192267 18 + 128539186 I e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e macFas5.chr11 128197926 0 + 137757926 C e rheMac8.chr11 123950395 28 + 133663169 I e nomLeu3.chr10 97825511 2 + 106955855 I a score=33873.000000 s hg38.chr12_KI270834v1_alt 27336 80 + 119498 cggacacacgcacgcgcacacacacacggatacatgcacgcgcacacacgtacgcacgcacatgtacacatacgcacacg s panTro5.chr12 127313655 78 + 137163284 cggacacacgcacgcgcacacacac--ggatacacgcacgcgcacacacgtacgcacgcacacacacacatacgcacacg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664496 78 + 135337776 cggacacacgcacgcgcatacacac--ggatacacgcacgcgcacacacgtacgcacgcacacacacacatacgcacacg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177878 59 - 8369578 -------------------ACACAC--GGATacacgcacgcacacacacgtacgcatgcacacgcacacatacgcacacg i gorGor5.CYUI01015152v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1526306 21 + 5364348 I e cebCap1.NW_016107484v1 2830580 0 + 4466143 C e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114772338 0 + 124281992 C e colAng1.NW_012116043v1 4567947 0 - 8658521 C e manLeu1.NW_012103587v1 506162 8 + 6255621 I e chlSab2.chr11 119192267 18 + 128539186 I e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e macFas5.chr11 128197926 0 + 137757926 C e rheMac8.chr11 123950395 28 + 133663169 I e nomLeu3.chr10 97825511 2 + 106955855 I a score=1500.000000 s hg38.chr12_KI270834v1_alt 27416 1 + 119498 c s panTro5.chr12 127313733 1 + 137163284 c i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664574 1 + 135337776 c i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177937 1 - 8369578 c i gorGor5.CYUI01015152v1 C 0 C 0 s manLeu1.NW_012103587v1 506170 1 + 6255621 c i manLeu1.NW_012103587v1 I 8 C 0 s cebCap1.NW_016107484v1 2830580 1 + 4466143 c i cebCap1.NW_016107484v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1526306 21 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114772338 0 + 124281992 C e colAng1.NW_012116043v1 4567947 0 - 8658521 C e chlSab2.chr11 119192267 18 + 128539186 I e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e macFas5.chr11 128197926 0 + 137757926 C e rheMac8.chr11 123950395 28 + 133663169 I e nomLeu3.chr10 97825511 2 + 106955855 I a score=12025.000000 s hg38.chr12_KI270834v1_alt 27417 15 + 119498 --acgcacacgca--------------cacg s panTro5.chr12 127313734 13 + 137163284 --acgcac--gca--------------cacg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664575 13 + 135337776 --acgcac--gca--------------cacg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177938 27 - 8369578 --acgcac--gcacatgcacgcacatgcacg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825513 13 + 106955855 --ccacac--aca--------------caca i nomLeu3.chr10 I 2 C 0 s manLeu1.NW_012103587v1 506171 13 + 6255621 --acacac--gcg--------------caca i manLeu1.NW_012103587v1 C 0 C 0 s cebCap1.NW_016107484v1 2830581 15 + 4466143 acacacac--aca--------------caca i cebCap1.NW_016107484v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1526306 21 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114772338 0 + 124281992 C e colAng1.NW_012116043v1 4567947 0 - 8658521 C e chlSab2.chr11 119192267 18 + 128539186 I e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e macFas5.chr11 128197926 0 + 137757926 C e rheMac8.chr11 123950395 28 + 133663169 I a score=9842.000000 s hg38.chr12_KI270834v1_alt 27432 4 + 119498 caca s panTro5.chr12 127313747 4 + 137163284 caca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664588 4 + 135337776 caca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177965 4 - 8369578 caca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825526 4 + 106955855 cacg i nomLeu3.chr10 C 0 C 0 s manLeu1.NW_012103587v1 506184 4 + 6255621 caca i manLeu1.NW_012103587v1 C 0 I 2 s calJac3.chr9 114772338 4 + 124281992 caca i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2830596 4 + 4466143 caca i cebCap1.NW_016107484v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1526306 21 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4567947 0 - 8658521 C e chlSab2.chr11 119192267 18 + 128539186 I e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e macFas5.chr11 128197926 0 + 137757926 C e rheMac8.chr11 123950395 28 + 133663169 I a score=51939.000000 s hg38.chr12_KI270834v1_alt 27436 14 + 119498 cacacacacaTTTG s panTro5.chr12 127313751 14 + 137163284 cacacacacaTTTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664592 14 + 135337776 cacacacacaTTTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177969 14 - 8369578 cgcacacacaTTTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825530 14 + 106955855 cacacacacaTTTG i nomLeu3.chr10 C 0 C 0 s chlSab2.chr11 119192285 14 + 128539186 CACACACACATTTG i chlSab2.chr11 I 18 C 0 s manLeu1.NW_012103587v1 506190 14 + 6255621 cacacacacaTTTG i manLeu1.NW_012103587v1 I 2 C 0 s colAng1.NW_012116043v1 4567947 14 - 8658521 cacacacacaTTTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114772342 14 + 124281992 cacacacaGATTTG i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2830600 14 + 4466143 cacacaGAGATCTG i cebCap1.NW_016107484v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1526306 21 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e macFas5.chr11 128197926 0 + 137757926 C e rheMac8.chr11 123950395 28 + 133663169 I a score=50765.000000 s hg38.chr12_KI270834v1_alt 27450 13 + 119498 GGTAG-TAAAAAAA s panTro5.chr12 127313765 13 + 137163284 GGTAG-TAAAAGAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664606 13 + 135337776 GGTAG-TAAAAGAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177983 13 - 8369578 GGTAG-TAAAAGAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825544 13 + 106955855 GATAG-TAAAAGAA i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 9559592 13 - 137757926 GGCAG-TAAAAGAA i macFas5.chr11 n 0 C 0 s chlSab2.chr11 119192299 13 + 128539186 GGTAG-TAAAAGAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 506204 13 + 6255621 GGTAG-TAAAAGAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4567961 13 - 8658521 GGTAG-TAAAAGGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114772356 13 + 124281992 GGTAG-TAAGACAA i calJac3.chr9 C 0 I 3 s cebCap1.NW_016107484v1 2830614 14 + 4466143 GGTAGTTAAGACGA i cebCap1.NW_016107484v1 C 0 I 4 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1526306 21 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e rheMac8.chr11 123950395 28 + 133663169 I a score=362681.000000 s hg38.chr12_KI270834v1_alt 27463 78 + 119498 AA----ACAGCCGTGAGTGCAGTGATAGAAGCCTGTTTGTGTCCATAGGAGGAGAGGCTG-------------------------------------------------CCACAAATCGCTTCATTCTTTT s panTro5.chr12 127313778 82 + 137163284 AACAAAACAGCCGTGAGTGCAGTGATAGAAGCCTGTTCGTGTCCATAGGAGGAGAGGCTG-------------------------------------------------CCACAAATCGCTTCATTCTTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664619 82 + 135337776 AACAAAACAGCCGTGAGTGCAGTGATAGAAGCCTGTTCGTGTCCATAGGAGGAGAGGCTG-------------------------------------------------CCACAAATCGCTTCATTCTTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8177996 82 - 8369578 AACAAAACAGCCGTGAGTGCAGTGATAGAAGCCTATTAGTGTCCATAGGAGGAGAGGCTG-------------------------------------------------CCACAAATTGCTTCATTCTTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825557 82 + 106955855 AACAAAACAGCCGTGAGTGCAGTGATAGAAGCCTATTCGTGTCCACAGGAGGAGAGGCTG-------------------------------------------------CCACAAATCGCTTCATTCTTTT i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 9559605 82 - 137757926 AACAAGCCAGCTGTGACTGCAGTGATGGGACCATATTCACCTCCCTAGGAGGAGAGACTG-------------------------------------------------CTGCAATTCGCTTCACTCTTTT i macFas5.chr11 C 0 n 0 s chlSab2.chr11 119192312 128 + 128539186 AACAAAACAGCCGTGAGTGCAGTGATAGAAGCCTGTTCGTGTCCATAGGAGGAGAGGCTGTCACAGTGCGGAGATAGAAGCCTGTTCGTGTCCAT---AGGACAGGCTACCACAAATCACTTCATTCTTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 506217 131 + 6255621 AACAAAACAGCCGCGAGTGCAGTGATAGAAGCCTGTTCGTGTCCATAGGAGGAGAGGCTGTCACAGTGCGGAGATAGAAGCCTATTCGTGTCCATAGGAGGACAGGCTACCACAAATTGCTTCATTCTTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4567974 131 - 8658521 AACAAAACAGCCGTGAGTGCAGTGATAGAAGCCTATTCGTGTCCATAGGAGGAGAGGCTGTCACAGTGCGGAGATAGAAGCCTATTCGCATCCATAGGAGGAGAGGCTACCACAAATCACTTCATTCTTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114772372 77 + 124281992 ----AAACAGCCGTGAGTGTAGTGACAGAAGTCTGTTCATGTCCATAGG-GGAGAGATTG-------------------------------------------------CTGCAAATCGCTTCATTCTTCT i calJac3.chr9 I 3 C 0 s cebCap1.NW_016107484v1 2830632 78 + 4466143 ----AAACAGCCGTGAGTGCAGTGACAGAAGCCTATTCATGTCCATAGGAGGAGAGACTG-------------------------------------------------CTGCAAATTGCTTCATTCTTTT i cebCap1.NW_016107484v1 I 4 C 0 s aotNan1.NW_018491581v1 1526327 75 + 5364348 ----AAACAGCTGTGAGTGCAGTGACAGAAGCCTATTCACGTCCATA---GGAGAGACTG-------------------------------------------------CCGCAAATCGCTAAATTCTTTT i aotNan1.NW_018491581v1 I 21 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e rheMac8.chr11 123950395 28 + 133663169 I a score=30827.000000 s hg38.chr12_KI270834v1_alt 27541 8 + 119498 GGG-ATTTT s panTro5.chr12 127313860 8 + 137163284 GGG-ATTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664701 9 + 135337776 GGGTATTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178078 8 - 8369578 GGG-ATTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825639 8 + 106955855 GGG-GTTTT i nomLeu3.chr10 C 0 C 0 s chlSab2.chr11 119192440 8 + 128539186 GGG-GTTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 506348 8 + 6255621 GGG-GTTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4568105 8 - 8658521 GGG-GTTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114772449 8 + 124281992 GGA-GTTTT i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2830710 8 + 4466143 GGA-GTTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1526402 8 + 5364348 GGA-GTTTT i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e macFas5.chr11 9559687 0 - 137757926 I e rheMac8.chr11 123950395 28 + 133663169 I a score=53751.000000 s hg38.chr12_KI270834v1_alt 27549 15 + 119498 CACAC-ATTTGGGttt s panTro5.chr12 127313868 15 + 137163284 CACAC-ATTTGGGttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664710 16 + 135337776 CACACTATTTGGGTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178086 15 - 8369578 CACAC-ATTTGGGTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825647 15 + 106955855 CCCAC-ATTTGAGttg i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128197926 15 + 137757926 CGCAC-ATTTGGGTTT i macFas5.chr11 C 0 C 0 s chlSab2.chr11 119192448 12 + 128539186 CACAC-ATTTGGG--- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 506356 12 + 6255621 CACAC-ATTCGGG--- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4568113 15 - 8658521 CACAC-ATTTGGGTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114772457 15 + 124281992 CATAC-ATTTGGGttt i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2830718 15 + 4466143 CATAC-ATTTGttttt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1526410 15 + 5364348 CATAT-ATTTGGTTTT i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macNem1.NW_012010578v1 10597943 28 - 16319837 I e rheMac8.chr11 123950395 28 + 133663169 I a score=18630.000000 s hg38.chr12_KI270834v1_alt 27564 5 + 119498 ttttt s panTro5.chr12 127313883 5 + 137163284 ttttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664726 5 + 135337776 TTTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178101 5 - 8369578 TTTGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825662 5 + 106955855 ttttt i nomLeu3.chr10 C 0 C 0 s macNem1.NW_012010578v1 10597971 5 - 16319837 ttttt i macNem1.NW_012010578v1 I 28 C 0 s colAng1.NW_012116043v1 4568128 5 - 8658521 TTTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114772472 5 + 124281992 ttttt i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2830733 5 + 4466143 ttttt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1526425 5 + 5364348 TTTTT i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M e manLeu1.NW_012103587v1 506368 0 + 6255621 C e chlSab2.chr11 119192460 0 + 128539186 C e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macFas5.chr11 128197941 0 + 137757926 C e rheMac8.chr11 123950395 28 + 133663169 I a score=18018.000000 s hg38.chr12_KI270834v1_alt 27569 3 + 119498 ttt s panTro5.chr12 127313888 3 + 137163284 ttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664731 3 + 135337776 TTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178106 3 - 8369578 TTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825667 3 + 106955855 ttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123950423 3 + 133663169 TTT i rheMac8.chr11 I 28 C 0 s macNem1.NW_012010578v1 10597976 3 - 16319837 ttt i macNem1.NW_012010578v1 C 0 C 0 s chlSab2.chr11 119192460 3 + 128539186 TTT i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4568133 3 - 8658521 TTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114772477 3 + 124281992 ttt i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2830738 3 + 4466143 ttt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1526430 3 + 5364348 TTT i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M e manLeu1.NW_012103587v1 506368 0 + 6255621 C e cerAty1.NW_012001186v1 12219909 350 + 20526591 I e macFas5.chr11 128197941 0 + 137757926 C a score=8281.000000 s hg38.chr12_KI270834v1_alt 27572 1 + 119498 t s panTro5.chr12 127313891 1 + 137163284 t i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664734 1 + 135337776 T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178109 1 - 8369578 T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825670 1 + 106955855 t i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123950426 1 + 133663169 T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197941 1 + 137757926 T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597979 1 - 16319837 t i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12220259 1 + 20526591 T i cerAty1.NW_012001186v1 I 350 C 0 s chlSab2.chr11 119192463 1 + 128539186 T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 506368 1 + 6255621 T i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114772480 1 + 124281992 t i calJac3.chr9 C 0 I 312 s cebCap1.NW_016107484v1 2830741 1 + 4466143 t i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1526433 1 + 5364348 T i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4568136 0 - 8658521 C a score=7098.000000 s hg38.chr12_KI270834v1_alt 27573 1 + 119498 t s panTro5.chr12 127313892 1 + 137163284 t i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664735 1 + 135337776 T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178110 1 - 8369578 T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825671 1 + 106955855 t i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123950427 1 + 133663169 T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197942 1 + 137757926 T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597980 1 - 16319837 t i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12220260 1 + 20526591 T i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119192464 1 + 128539186 T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 506369 1 + 6255621 T i manLeu1.NW_012103587v1 C 0 C 0 s cebCap1.NW_016107484v1 2830742 1 + 4466143 t i cebCap1.NW_016107484v1 C 0 I 319 s aotNan1.NW_018491581v1 1526434 1 + 5364348 T i aotNan1.NW_018491581v1 C 0 M 6820 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114772481 312 + 124281992 I e colAng1.NW_012116043v1 4568136 0 - 8658521 C a score=10670.000000 s hg38.chr12_KI270834v1_alt 27574 2 + 119498 tt s panTro5.chr12 127313893 2 + 137163284 tt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664736 2 + 135337776 TT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178111 2 - 8369578 TT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825672 2 + 106955855 tt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123950428 2 + 133663169 TT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197943 2 + 137757926 TT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597981 2 - 16319837 tt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12220261 2 + 20526591 TC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119192465 2 + 128539186 TT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 506370 2 + 6255621 TT i manLeu1.NW_012103587v1 C 0 C 0 s cebCap1.NW_016107484v1 2831062 2 + 4466143 TT i cebCap1.NW_016107484v1 I 319 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1526435 6820 + 5364348 M e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114772481 312 + 124281992 I e colAng1.NW_012116043v1 4568136 0 - 8658521 C a score=16814.000000 s hg38.chr12_KI270834v1_alt 27576 5 + 119498 ttttt s panTro5.chr12 127313895 5 + 137163284 ttttt i panTro5.chr12 C 0 I 1 s panPan2.chr12 125664738 1 + 135337776 G---- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178113 3 - 8369578 TTT-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825674 5 + 106955855 ttttt i nomLeu3.chr10 C 0 I 2 s rheMac8.chr11 123950430 5 + 133663169 TTTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197945 5 + 137757926 TTTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597983 5 - 16319837 ttttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12220263 5 + 20526591 TTTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119192467 5 + 128539186 TTTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 506372 5 + 6255621 TTTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4568136 3 - 8658521 --TTT i colAng1.NW_012116043v1 C 0 C 0 s cebCap1.NW_016107484v1 2831064 5 + 4466143 TTTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1533311 5 + 5364348 TTTTT i aotNan1.NW_018491581v1 M 6820 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114772481 312 + 124281992 I a score=311586.000000 s hg38.chr12_KI270834v1_alt 27581 35 + 119498 GGAGGGGTCGAAGGAAGAGTTATTTATGCTCTTAC s panTro5.chr12 127313901 35 + 137163284 GGAGGGGTCGAAGGAAGAGTTATTTATGCTCTTAC i panTro5.chr12 I 1 C 0 s panPan2.chr12 125664739 35 + 135337776 GTAGGGGTCGAAGGAAGAGTTATTTATGCTCTCAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178116 35 - 8369578 GGAGGGGTCGAAGGAAGAGTTATTTATGCTCTTAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825681 35 + 106955855 GGAGGGGTCGAAGGAAGAGTTATTTATGCTCTTAC i nomLeu3.chr10 I 2 C 0 s rheMac8.chr11 123950435 35 + 133663169 GGAGGGGTCGAAGGAAGAGATATTTATGCTCTTAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197950 35 + 137757926 GGAGGGGTCGAAGGAAGAGATATTTATGCTCTTAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10597988 35 - 16319837 GGAGGGGTCGAAGGAAGAGATATTTATGCTCTTAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12220268 35 + 20526591 GGAGGGGTCAAAGGAAGAGATATTTATGCTCTTAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119192472 35 + 128539186 GGAGGGGTCGAAGGAAGAGATATTTATGCTCTTAC i chlSab2.chr11 C 0 I 309 s manLeu1.NW_012103587v1 506377 35 + 6255621 GGAGGGGTCGAAGGAAGAGATATTTATGCTCTTAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4568139 35 - 8658521 GGAGGGGTCGAAGGAAGAGATATTTATGCTCTTAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114772793 35 + 124281992 GGAGGGGGCAAAGGAAGAGTTATTTATGCTTTTAC i calJac3.chr9 I 312 C 0 s cebCap1.NW_016107484v1 2831069 35 + 4466143 GGAGGGGACAAAGGAAGAGTTATTTATGCTTTTCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1533316 35 + 5364348 GGAGGGGACAAAGGAAGAGTTATTTATGCTTTTAC i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M a score=2791271.000000 s hg38.chr12_KI270834v1_alt 27616 335 + 119498 AAAAAAGGAAGCTGTAAAATGTAAAACACTATAAAGTCAGATGGAGCTGCATTCGTCATTTGTACTTCTTTTTTCTTAGGAGAAAGGAGTTATATGGAAACTTCTTTCATTTTCTCCCCTGCTCCTCTATGTCCAAAGTTGAAGGGCGATCATGCTATTGAGTGGGTCATATCTTCTGAACTGAAAAACCACCGATGCCA-----CTTTCAGTCTTAGCAACAGGGAAAACAGTCTCAAGTGCTATCTAAGGCTCTACGAAGAAGAGTGAGGCCGTTTGCAGCAGTCTCTCCTCCTAGGGCGGTGAATATGGTCCCATCACTGCACTCACTACTGGCTTG s panTro5.chr12 127313936 335 + 137163284 AAAAAAGGAAGCTGTAAAATGTAAAACACTGTAAAGTCAGATGGAGCTGCATTCGTCATTTGTACTTCTTTTTTCTTAGGAGAAAGGAGTTATATGGAAACTTCTTTCATTTTCTCCCCTGCTCCTCTATGTCCAAAGTTGAAGGGCGATCATGCTATTGAGTGGGTCATATCTTCTGAACTGAAAAACCACCGATGCCA-----CTTTCAGTCTTAGCAACAGGGAAAACAGTCTCAAGTGCTATCTAAGGCTCTACGAAGAAGAGTGAGGCCGTTTGCAGCAGTCTCTCCTCCTAGGGAGGTGAATATGGTCCCATCACTGCACTCACTACTGGCTTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125664774 335 + 135337776 AAAAAAGGAAGCTGTAAAATGTAAAACACTGTAAAGTCAGATGGAGCTGCATTCGTCATTTGTACTTCTTTTTTCTTAGGAGAAAGGAGTTATATGGAAACTTCTTTCATTTTCTCCCCTGCTCCTCTATGTCCAAAGTTGAAGGGCGATCATGCTATTGAGTGGGTCATATCTTCTGAACTGAAAAACCACCGATGCCA-----CTTTCAGTCTTAGCAACAGGGAAAACAGTCTCAAGTGCTATCTAAGGCTCTACGAAGAAGAGTGAGGCCGTTTGCAGCAGTCTCTCCTCCTAGGGAGGTGAATATGGTCCCATCACTGCACTCACTACTGGCTTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178151 335 - 8369578 AAAAAAGGAAGCTGTAAAATGTAAAACACTGTAAAGTCAGATGGAGCTGCATTCGTCATTTGTACTTCTTTTTTCTTAGGAGAAAGGAGTTATATGGAAACTTCTTTCATTTTCTCCCCTGCTCCTCTATGTCCAAAGTTGAAGGGCGATCATGCTATTGAGTGGGTCATATCTTCTGAACTGAAAAACCACCGATGCCA-----CTTTCAGTCTTAGCAACAGGGAAAACAGTCTCAAGTGCTATCTAAGGCTCTACGAAGAAGAGTGAGGCCGTTTGCAGCAGTCTCTCCTCCTAGGGAGGTGAATATGGTCCCATCACTGCACTCACTACTGGCTTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97825716 335 + 106955855 AAGAAAGGAAGCTGTAAAATGTAAAACCCTATAAAGTCAGATGGAGCTGCATTCGTCATTTTTACTTCCTTTTTCTTAGAAGAAAGGAGTTATATGGAAACTTCTTTCATTTTCTCCCCTGCTCCTCTATGTCCAAAGTTGAAGGGTGATCATACTATTTAGTGGGTCATATCTTCTGAACTGAAAAACCACTGATGCCA-----CTTTCAGTCTTAGCAACAGGGAAAACAGTCTCAAGTGCTATCTAAGGCTCTACAAAGAGGAGTGAAGCGGTTTGCAGCAGTCTCTCCTCCTAGGGAGGTGAATATGGTCCCATCACTGCACTTACTAATGGCTTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123950470 334 + 133663169 AAAAAAGGAAGCTGTAAAATGTAAAACACTGTAAAGTCAGATGAAGCTGCATTCGTCATTGTTACTTC-TTTTTCTTAGGAGAAAGAAGTTATATGGAAACTTCTTTCATTTTCTCCCCTGCTCATCTATGTCCAAAGTTGAAGGGCGATCATACTCTCGGGTGGGTCATATCTTCTGAAATGAAAAACCACCGATGCCA-----CTTTCAGTCTTAGCAACAGGGAAAACAGTCCCAAGCGCTATCTAAGGCTCTACAAAAAAGAGTGAAGCGAATTGCAGCAGTCTCTCCTCCTAGGGAGGTGAATATGGTCCCATCACTGCAGTCACAGCTGGCTTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128197985 334 + 137757926 AAAAAAGGAAGCTGTAAAATGTAAAACACTGTAAAGTCAGATGAAGCTGCATTCGTCATTGTTACTTC-TTTTTCTTAGGAGAAAGAAGTTATATGGAAACTTCTTTCATTTTCTCCCCTGCTCATCTATGTCCAAAGTTGAAGGGTGATCATACTCTCGGGTGGGTCATATCTTCTGAAATGAAAAACCACCGATGCCA-----CTTTCAGTCTTAGCAACAGGGAAAACAGTCCCAAGCGCTATCTAAGGCTCTACAAAAAAGAGTGAAGCGAATTGCAGCAGTCTCTCCTCCTAGGGAGGTGAATATGGTCCCATCACTGCAGTCACAGCTGGCTTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10598023 334 - 16319837 AAAAAAGGAAGCTGTAAAATGTAAAACACTGTAAAGTCAGATGAAGCTGCATTCGTCATTGTTACTTC-TTTTTCTTAGGAGAAAGAAGTTATATGGAAACTTCTTTCATTTTCTCCCCTGCTTATCTATGTCCAAAGTTGAAGGGCGATCATACTCTCGGGTGGGTCATATCTTCTGAAATGAAAAACCACCGATGCCA-----CTTTCAGTCTTAGCAACAGGGAAAACAGTCCCAAGCGCTATCTAAGGCTCTACAAAAAAGAGTGAAGCGAATTGCAGCAGTCTCTCCTCCTAGGGAGGTGAATATGGTCCCATCACTGCAGTCACAGCTGGCTTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12220303 334 + 20526591 AAAAAAGGAAGCTGTAAAATGTAAAACACTGTAAAGTCAGATGAAGCTGCATTCGTCATTGTTACTTC-TTTTTCTTAGGAGAAATAAGTTGTATGGAAACTTCTTTCATTTTCTCCCCTGCTCATCTATGTCCAAAGTTGAAGGGCGATCATACTATTGGGTGGGTCATATCTTCTGAACTGAAAAACCACCGATGCCA-----CTTTTAGTCTTAGCAACAGGGAAAACAGTCCCAAGTGCTATCTAAGGCTCTACAAAAAAGAGTGAAGCGAATTGCAGCAGTCTCTCCTCTTAGGGAGGTGAATATGGTCCCATCACTGCAGTCACAGCTGGCTTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119192816 334 + 128539186 aaaaaggaaaGCTGTAAAATGTAAAACACTATAAAGTCAGATGAAGCTGCATTCGTCATTGTTACTTC-TTTTTCTTAGGAGAAAGAAGTTATATGGAAACTTCTTTCATTTTCTCCCCTGCTCATCTATGTCCAAAGTTGAAGGGCGATCATACTATTGGGTGGGTCATATCTTCTGAACTGAAAAACCACCGATGCCA-----CTTTCAGTCTTAGCAACAGGGAAAACAGTCCCAAGTGCTATCTAAGGCTCTACAAAAAAGAGTGAAGCGAATTGCAGCAGTCTCTCCTCCTAGGGAGGTGAATATGGTCCCATCACTGCAGTCACAGCTGGCTTG i chlSab2.chr11 I 309 C 0 s manLeu1.NW_012103587v1 506412 334 + 6255621 AAAAAAGGAAGCTATAAAATGTAAAACACTGTAAAGTCAGATGAAGCTGCATTCATCATTGTTACTTC-TTTTTCTTAGGAGAAGTAAGTTATATGGAAACTTCTTTCATTTTCTCCCCTGCTCATCTATGTCCAAAGTTGAAGGGCGATCATACTATTGGGTGGGTCATATCTTCTGAACTGAAAAACCACCGATGCCA-----CTTTCAGTCTTAGCAACAGGGAAAACAGTCCCAAGCACTATCTAAGGCTCTACAAAAAAGAGTGAAGCGAATTGCAGCAGTCTCTCCTCTTAGGGAGGTGAATATGGTCCCATCACTGCAGTCACAGCTGGCTTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4568174 334 - 8658521 CAAAAAGGAAGCTGTAAAATGTAAAACACTATAAAGTCAGATGAAGCTGCATTCGTCATTGTTACTTC-TTTTTCTTAGGAGAAGGGAGTTATATGGAAACTTCTTTCATTTTCTCCCCTGCTCATCTGTGTCCAAAGATGAAGGGCGATCATACTATCGGGTGGGTCATATCTTCTGAACTGAAAAACCACCGATGCCA-----CTTTCAGTCTTAGCAACAGGGAAAACAGTCCCAAGTGCTATCTAAGGCTCTGCAAAAAAGAGTGAAGCGAATTGCAGCAGTCTCTCCTCCTAGGGAGGTGAATATGGTCCCATCACTGCAGTCACAGCTGACTTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114772828 336 + 124281992 AAAAAAGGCAGCTGTAAAGTATAAAACACTATAAAGTCAGCTGGAGCTGCATTCGGCCTTTTTACGTC-TTTTTCTTAGGAGAAAGGAGTTGCTGGGAAACGTCTCTCATTTTCTCCCCGGCTCCTC--TGTCCAGAGTTGAAGGGAGATCGTACTACTGTGTGCGTCATATCTTCAGAACTGAAAAACCACTGATGCCACTTTCCTTTCAGTCTCAGCAACA-GGAATACAGTCCCAAGTGCCATCTAAGGCTCTACAGAAAAGAAGGAAGGCATCTGCTGCAGTCTGTCCTCCCAGGGAGGGGAATAGGGTCCCATCACTGCTCTCAGAGCCAGCTTG i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2831104 338 + 4466143 AAAAAAGGAAGCTGTAAAATGTAAAACACTGTAAAGTCAGATGGAGCTGCATTCAGCCTTTTTACTTC-TTTTTCTTAGGAGAAAGGAGTTACAGGGAAACGTCTCTCATTTTCTCCCCTGCTCCTCTATGTCCAAAGTTGAAGGGAGATCGTACTATTGTGTGCGTCATATCTTCTGAACTGAAAAACCACTGATGCCACTTTCCTTTCAGTCTCAGCAACA-GGAAAACAGTCCCAAGTGCCATCTAAGTCTCTACAGAAAAGAAAGAAGCCATTTGCTGCAGTCTGTCCTCCTAGGGAGGGGAATAGGGTCCCATCACTGCTCTCAGGGTGGGTGTG i cebCap1.NW_016107484v1 C 0 I 49 s aotNan1.NW_018491581v1 1533351 322 + 5364348 AAAAAAGGAAGCTGTGAAATGTGGAACACTATAAAGTCAGATGGAGCTGCATTCGGCATTTTTACTTC-CTTTTCTTAGGAGAAAGGAGTAACAGGGAAACGTCTCTCATTTTCTCCCCTGCTCCTCTATGTCCAAAGTTGAAGGGAGATCGTACTGTTGGGTGCGTCATATCTTCTGAACTGAAAAACCACTGTTGCCACTTTCCTTTCAGTCTCAGCAACA-GGAAAACAGTCCCAAGTGCCATCTAAGGCTCTACAGAAAGGAAGGAAGCCATTTGCTGCAGTCTGTCCTCCTAGGGAGGGGAATAGGGTCCCATCACTGC---------------- i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M a score=402432.000000 s hg38.chr12_KI270834v1_alt 27951 58 + 119498 TTTTCTTTTACTGCCTTACACTGAACCCAAGCATGCATTCATAGGCTCAACTGCTGCA s panTro5.chr12 127314271 58 + 137163284 TTTTCTTTTACTGCCTTACACTGAACCCAAGCATGCATTCATAGGCTCAACTGCTGCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125665109 58 + 135337776 TTTTCTTTTACTGCCTTACACTGAACCCAAGCATGCATTCATAGGCTCAACTGCTGCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178486 58 - 8369578 TTTTCTTTTACTGCCTTACACTGAACCCAAGCATGCATTCGTAGGCTCAACTGCTGCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97826051 58 + 106955855 TTTTCTTTTACTGCCTTACACTGAACCCGAGCATGCATTCATAGGCTCAACTGCTGCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123950804 58 + 133663169 TTTTCTTTTACTGCCTTACACTGAACCCAAGCATGCATTCATAGGCTTAACTGCTGCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128198319 58 + 137757926 TTTTCTTTTACTGCCTTACACTGAACCCAAGCATGCATTCATAGGCTTAACTGCTGCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10598357 58 - 16319837 TTTTCTTTTACTGCCTTACACTGAACCCAAGCATGCATTCATAGGCTTAACTGCTGCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12220637 58 + 20526591 TTTTCTTTTACTGCCTTACACTGAACCCAAGCATGCATTCATAGGCTTAACTGCTGCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119193150 58 + 128539186 TTTTCTTTTACTGCCTTACGCTGAACCCAACCATGCATTCATAGGCTTAACTGCTGCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 506746 58 + 6255621 TTTTCTTTTACTGCCTTACACTGAACCCAAGCATGCATTCATAGGCCTAACTGCTGCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4568508 58 - 8658521 TTTTCTTTTACTGCCTTACACTGAACCCAAGCATGCATTCATAGGCTTAACTGCTGCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114773164 50 + 124281992 -TCTCTTCCACTGCC-----GTTAGCGCAGCTGTGCATTCACAGGGCTAA--GCTGCA i calJac3.chr9 C 0 C 0 s aotNan1.NW_018491581v1 1533673 52 + 5364348 -TCTCTTCCACTGCC-----CTTAACGCAGCCACGCATTCACAGGGCTAACTGCTGCA i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e cebCap1.NW_016107484v1 2831442 49 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=723757.000000 s hg38.chr12_KI270834v1_alt 28009 83 + 119498 CAATCTGGTACTTCCTTAGAAGAATGAAAACACATTGCAAATACCGAATATCCAAGGACTTCCGAGAAAGAGGTAAAAAACAG s panTro5.chr12 127314329 83 + 137163284 CAATCTGGTACTTCCTTAGAAGAATGAAAACACATTGCAAATACCGAATATCCAAGGACTTCCGAGAAAGAGGTAAAAAACAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125665167 83 + 135337776 CAATCTGGTACTTCCTTAGAAGAATGAAAACACATTGCAAATACCGAATATCCAAGGACTTCCGAGAAAGAGGTAAAAAACAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178544 83 - 8369578 CAATCTGGTACTTCCTTAGAAGAATGAAAACACATTGCAAATACCAAATATCCAAGGACTTCCGAGAAAGAGGTAAAAAACAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97826109 83 + 106955855 CAATCTGGTACTTCCTTAGAAGAATGAAAACATATTGCAAATACCAAATATCCAAGGACTTCTGAGAAAGACGTAAAAAACAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123950862 83 + 133663169 CAATCTGGTACTTCCTTAGAAGAATGAAAACACATTGCAAATACCAAATATCCAAGGACTTCTGAGAAAGAGGTAAAAAACAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128198377 83 + 137757926 CAATCTGGTACTTCCTTAGAAGAATGAAAACACATTGCAAATACCAAATATCCAAGGACTTCTGAGAAAGAGGTAAAAAACAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10598415 83 - 16319837 CCATCTGGTACTTCCTTAGAAGAATGAAAACACATTGCAAATACCAAATATCCAAGGACTTCTGAGAAAGAGGTAAAAAACAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12220695 83 + 20526591 CAATCTGGTACTTCCTTAGAAGAATGAAAACACATTGCAAATACCAAATATCCAAGGACTTCTGAGAAAGAGGTAAAAAACAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119193208 83 + 128539186 CAATCTGGTACTTCCTTAGAAGAATGAAAACACATTGCAAATACCAAATATCCAAGGACTTCTGAGAAAGAGGTGAAAAACAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 506804 83 + 6255621 CAATCTGGTACTTCCTTAGAAGAATGAAAACATATTGCAAATACCAAATATCCAAGGACTTCTGAGAAAGAGGTAAAAAACAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4568566 83 - 8658521 CAATCTGGTGCTTCCTTAGAAGAATGAAAACACATTGCAAATACCAAATATCCAAGGACTTCTGAGAAAGAGGTAAAAAACAG i colAng1.NW_012116043v1 C 0 I 659 s calJac3.chr9 114773214 80 + 124281992 CAGTCTG---CTTCCTTAGAAGAATGAAAACACATTGCACATAGCAAATATCCAAAGACGTCTGAGAGAGGAGGGAAAAGCAG i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2831491 82 + 4466143 CAGTCTGCTACTTCCTTAGAAGAATGAAAACACATTGCACATA-CAAATATCCAAAGGCTTCTAAGAAAGAAGTTGAAAGCAG i cebCap1.NW_016107484v1 I 49 C 0 s aotNan1.NW_018491581v1 1533725 83 + 5364348 CAGTCTGCTACTTCCTTAGAAGAATGAAAACACATTGCACGTACCAAATATCCAAAGACTTCTGAGAAAGAAGTTAAAAGCAG i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M a score=1606938.000000 s hg38.chr12_KI270834v1_alt 28092 188 + 119498 CCTCCTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAGCAATGTGGACTT-ACACATGTAAAACTGTGTTTGTACAGAGACTGCGATGGTTTCTTCACATAGGAAATTAACTTTGCTGTATTGTCTTTGGGCTTCTTTATCACATTAAAAGTTTGCAAGCTTGGACCTTTGTTCTTATTCAGTAAATCT s panTro5.chr12 127314412 188 + 137163284 CTTCCTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAGCAATGTGGACTT-ACACATGTAAAACTGTGTTTGTACAGAGACTGCGATGGTTTCTTCACATAGGAAATTAACTTTGCTGTATTGTCTTTGGGCTTCTTTATCACATTAAAAGTTTGCAAGCTTGGACCTTTGTTCTTATTCAGTAAATCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125665250 188 + 135337776 CTTCCTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAGCAATGTGGACTT-ACACATGTAAAACTGTGTTTGTACAGAGACTGCGATGGTTTCTTCACATAGGAAATTAACTTTGCTGTATTGTCTTTGGGCTTCTTTATCACATTAAAAGTTTGCAAGCTTGGACCTTTGTTCTTATTCAGTAAATCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178627 188 - 8369578 CCTCCTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAGCAATGTGGACTT-ACACATGTAAAGCTGTGTTTGTACAGAGACTGCGATGGTTTCTTCACATAGGAAATTAACTTTGCTGTATTGTCTTTGGGCTTCTTTATCACATTAAAAGTTTGCAAGCTTGGACCTTTGTTCTTATTCAGTAAATCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97826192 188 + 106955855 CCTCCTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAACAATGTGGACTT-ACATATGTAAAACTGTGTTTGTACAGAGACTGCGATGGTTTCTTCACATAGGAAATTAACTTTGCTGTATTGTCTTTGGGCTTCTTTATCACATCAAAAGTTTGCAAACTTGGACCTTTGTTCTTATTCACTAAATCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123950945 185 + 133663169 CCTTGTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAACAAGGTGGAGTT-ACACATGTAAAAC--TGTTTGTACGGAGAC-GTGATGGTTTCTTCACATAGGAAATTAACTTTGCTATATTGTCTTTGGGCTTCTTTATCACGTCAAAAGTTGGCAAACTTGGACCTTTGTTCTTATTCAGTAAATCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128198460 185 + 137757926 CCTTGTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAACAAGGTGGAGTT-ACACATGTAAAAC--TGTTTGTACGGAGAC-GTGATGGTTTCTTCACATAGGAAATTAACTTTGCTATATTGTCTTTGGGCTTCTTTATCACGTCAAAAGTTTGCAAACTTGGACCTTTGTTCTTATTCAGTAAATCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10598498 186 - 16319837 CCTTGTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAACAAGGTGGAGTT-ACACATGTAAAAC--TGTTTGTATGGAGACTGTGATGGTTTCTTCACATAGGAAATTAACTTTGCTATATTGTCTTTGGGCTTCTTTATCACGTCAAAAGTTTGCAAACTTGGACCTTTGTTCTTATTCAGTAAATCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12220778 186 + 20526591 CCTTGTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAACAAGGTGGAGTT-ACACATGTAAAAC--TGTTTGTACAGAGACTGTGATGGTTTCTTCACATAGGAAATTAACTTTGCTATATTGTCTTTGGGCTTCTTTATCACGTCAAAAGTTTGCAAACTTGGACCTTTGTTCTTATTCAGTAAATCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119193291 186 + 128539186 CCTCCTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAACAAGGTGGAGTT-ACACATGTAAAAC--TGTTTGTACAGAGACTGTGATGGTTTCTTCACATAGGAAATTAACTTTGCTATATTGTCTTTGGGCTTCTTTATCACGTCAAAAGTTTGCAAACTTGGACCTTTGTTCTTATTCAGTAAATCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 506887 186 + 6255621 CCTTCTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAACAAGGTGGAGTT-ACACATGTAAAAC--TGTTTGTACAGAGACTGTGATGGTTTCTTCACATAGGAAATTAACTTTGCTATATTGTCTTTGGGCTTCTTTATCACGTCAAAAGTTTGCAAACTTGGACCTTTGTTCTTATTCAGTAAATCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4569308 186 - 8658521 CCTCCTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAACAAGGTGGAGTT-ACACGTGTAAAAC--TGTTTGTACGGAGACTGTAATGGTTTCTTCACATAGGAAATTAACTTTGCTAGATTGTCTTTGGGCTTCTTTATCATGTCAAAAGTTTGCAAACTTGGACCTTTGTTCTTATTCAGTAAATCT i colAng1.NW_012116043v1 I 659 C 0 s calJac3.chr9 114773294 187 + 124281992 CCTCCTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAAAAATGTGGACTTAACACATGTAAAAC--TGTTCGTACAGAGACTGTGATGGTTTCTTCGCACATAAAGTCAACTTTGCTGTATTGTCTTTGCACTTCGTTATCACATCAAAAGTTTGCAGACTCGGACCTTTGCTCTTACTCAGTAAATCC i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2831573 185 + 4466143 CCTCCTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAAAAATGTGGACTTAACACATGTAAAAC--TGTTTGTAC--AGACTGTGATGGTTTCTTCACATATAAAATCAACTATGCTATATTGTCTTTGCACTTCTTTATCACATCAAAAGTTTGCAAACTCAGACCTTTGTTCTTATTCAGTAAATCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1533808 187 + 5364348 CCTCCTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAAAAATGTGGACTTAACACGTGTAAAAC--TGTTTGTACAGAGACTGTGATGGTTTCTTCACATATAAAATCAACTTTGCGGTATTGTCTTTGCACTTCTTTATCACATCAAAAGTTTGCAAACTCAGACCTTTGTTCTTACTCAGTAAATCT i aotNan1.NW_018491581v1 C 0 I 6 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M a score=74886.000000 s hg38.chr12_KI270834v1_alt 28280 9 + 119498 ATGTCACAG s panTro5.chr12 127314600 9 + 137163284 ATGTCACAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125665438 9 + 135337776 ATGTCACAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178815 9 - 8369578 ATGTCACAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97826380 9 + 106955855 ATGTCACAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123951130 9 + 133663169 ATGTCACAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128198645 9 + 137757926 ATGTCACAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10598684 9 - 16319837 ATGTCACAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12220964 9 + 20526591 ATGTCACAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119193477 9 + 128539186 ATGTCACAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 507073 9 + 6255621 ATGTCACAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4569494 9 - 8658521 ATGTCACAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114773481 9 + 124281992 GTGTCACAG i calJac3.chr9 C 0 I 28 s cebCap1.NW_016107484v1 2831758 9 + 4466143 GTGTCACAG i cebCap1.NW_016107484v1 C 0 I 16 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1533995 6 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=408587.000000 s hg38.chr12_KI270834v1_alt 28289 78 + 119498 GATGAGTGAGGATTTAGCATCTTTTGCTTCAAATTAGAACCACATATTTGGAATTTACTGCTGCAGTTCTCAGCTGCG s panTro5.chr12 127314609 78 + 137163284 GATGAGTGAGGATTTAGCATCTTTTGCTTCAAATTAGAACCACATATTTGGAATTTACTGCTGCAGTTCTTAGCTGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125665447 78 + 135337776 GATGAGTGAGGATTTAGCATCTTTTGCTTCAAATTAGAACCACATATTTGGAATTTACTGCTGCAGTTCTTAGCTGCG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178824 78 - 8369578 GATGAGTGAGGATTTAGCATCTTTTGCTTCAAATTAGAACCACATATTTGGAATTTACTGCTGCAGTTCTCAGCTGCG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97826389 75 + 106955855 GATGAGTGAGGATTTAGCATCTTTTGCTTCAAATTAGAACCACATATTTGGG---TACTGCTGCAGTTCTCAACTGCG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123951139 74 + 133663169 GATGAGTCAGGACTTAGTGTCTTTTGCTTCAAATTAGAACCACATATTTGGA----ATTGCTGCAGTTCTCAACTGCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128198654 74 + 137757926 GATGAGTCAGGACTTAGTGTCTTTTGCTTCAAATTAGAACCACATATTTGGA----ATTGCTGCAGTTCTCAACTGCG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10598693 74 - 16319837 GATGAGTCAGGACTTAGTGTCTTTTGCTTCAAATTAGAACCACATATTTGGA----ATTGCTGCAGTTCTCAACTGCG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12220973 74 + 20526591 GATGAGTCAGGATTTAGCGTCTTTTGCTTCAAATTAGAACCACATATTTGGA----ATTGCTGCAGTTCTCAACTGCG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119193486 74 + 128539186 GATGAGTCAGGATTTAGCGTCTTTTGCTTCAAATTAGAACCACATATTTGGA----ATTGCTGCAGTTCTCAACTGCG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 507082 74 + 6255621 GATGAGTCAGGATTTAGCGTCTTTTGCTTCAAATTAGAACCACATATTTGGA----ATTGCTGCAGTTCTCAACTGCG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4569503 74 - 8658521 GATGAGTCAGGATTTAGCATCTTTGGCTTCAAATTAGAACCACATATTTGGA----ATTGCTGCAGTTCTCAACTGCG i colAng1.NW_012116043v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1533995 6 + 5364348 I e cebCap1.NW_016107484v1 2831767 16 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114773490 28 + 124281992 I a score=50305.000000 s hg38.chr12_KI270834v1_alt 28367 12 + 119498 CTTATCATGACA--- s panTro5.chr12 127314687 12 + 137163284 CTTATCATGACA--- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125665525 12 + 135337776 CTTATCATGACA--- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178902 12 - 8369578 CTTATCATGACA--- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97826464 12 + 106955855 CTTATCATGCCA--- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123951213 12 + 133663169 CGTATCATGAGA--- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128198728 12 + 137757926 CGTATCATGAGA--- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10598767 12 - 16319837 CTTATCATGAGA--- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12221047 12 + 20526591 CTTATCATGAGA--- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119193560 12 + 128539186 CTTATCATGAGA--- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 507156 12 + 6255621 CTTATCATGATA--- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4569577 12 - 8658521 CTTATCATGCTA--- i colAng1.NW_012116043v1 C 0 C 0 s cebCap1.NW_016107484v1 2831783 12 + 4466143 ---CTCAGTAAATCT i cebCap1.NW_016107484v1 I 16 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1533995 6 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114773490 28 + 124281992 I a score=38442.000000 s hg38.chr12_KI270834v1_alt 28379 6 + 119498 GTGGTG s panTro5.chr12 127314699 6 + 137163284 GTGGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125665537 6 + 135337776 GTGGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178914 6 - 8369578 GTGGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97826476 6 + 106955855 GTGGCG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123951225 6 + 133663169 GTGGCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128198740 6 + 137757926 GTGGCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10598779 6 - 16319837 GTGGCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12221059 6 + 20526591 GTGGCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119193572 6 + 128539186 GTGGCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 507168 6 + 6255621 GTGGCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4569589 6 - 8658521 GTGGCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114773518 6 + 124281992 GTGGCT i calJac3.chr9 I 28 C 0 s cebCap1.NW_016107484v1 2831795 6 + 4466143 GTGGCT i cebCap1.NW_016107484v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1533995 6 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=4239229.000000 s hg38.chr12_KI270834v1_alt 28385 530 + 119498 GAAACTGGAGGACATTAAAAAGCCCATGAAGTCAGCTGTACTTGCCATTTATTTAGTCTTGTTTGGAATAAAAGGTAAAGAATTCACAAATACCACCACCTCAGCACCTGTTTCAAAGGAAACATCAGGCTTCAGCTTGCAACATGATGTCGTTACAATTAAGCAAATAGCAGAAGCCCC-CGTCAGTTGCTTCCTTCTTCTGGAGAAGGC-GGGGAACTGCAATCCCCGGGGCTCCTGTGTTGAGTCTGGGAGGCAGAACAAAAGGAAAAGTGGCCTTTTCCACTCCACATCCTGGAGGTAATGGGTAGAGAAGACATACCCACATTTCCAGATAGTGAACGCTGAGT-AGAGAAGCAGGACTACCTGTCCTAGGAGACAACATAGAGACGCTTGCCAGGTCCTGAGTTCAGAATTTTGTTTTTGAGATTTATATAAAAGCACCTAAggctgggcgcagtggctcatgcctgtaatcctagcactttcggaggctgaggtgggaggattgcttgaggccagaagtttgagac s panTro5.chr12 127314705 530 + 137163284 GAAACTGGAGGACATTAAAAAGCCCATGAAGTCAGCTGTACTTGCTATTTATTTAGTCTTGTTTGGAATAAAAGGTAAAGAATTCACAAATACCACCACCTCAGCACCTGTTTCAAAGGAAACATCAGGCTTCAGCTTGCAACATGATGTCATTACAATTAAGCAAATAGCAGAAGCCCC-TGTCAGTTGCTTCCTTCTTCTGGAGAAGGC-GGGGAACTGCAATCCCCGGGGCTCCCGTGTTGAGTCTGGGAGGCAGAACAAAAATAAAAGTGGCCTTTTCCACTCCACATCCTGGAGGTAATGGGTAGAGAAGAGATACCCACATTTCCAGATAGTGAACGCTGAGT-AGAGAAGCAGGACTGCCTGTCCTAGGAGACAACATAGAGACGCTTGCCAGGTCCTGAGTTCAGAATTTTGTTTTTGAGATTTATATAAAAGCACCTAAggctgggcgcagtggctcatgcctgtaatcctagcactttgggaggctgaggtgggaggattgcttgaggccagaagtttgagac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125665543 530 + 135337776 GAAACTGGAGGACATTAAAAAGCCCATGAAGTCAGCTGTACTTGCTATTTATTTAGTCTTGTTTGGAATAAAAGGTAAAGAATTCACAAATACCACCACCTCAGCACCTGTTTCAAAGGAAACATCAGGCTTCAGCTTGCAACATGATGTCATTACAATTAAGCAAATAGCAGAAGCCCC-CGTCAGTTGCTTCCTTCTTCTGGAGAAGGC-GGGGAACTGCAATCCCCGGCGCTCCCGTGTTGAGTCTGGGAGGCAGAACAAAAAGAAAAGTGGCCTTTTCCACTCCACATCCTGGAGGTAATGGGTAGAGAAGAGATACCCACATTTCCAGATAGTGAACGCTGAGT-AGAGAAGCAGGACTGCCTGTCCTAGGAGACAACATAGAGACGCTTGCCAGGTCCTGAGTTCAGAATTTTGTTTTTGAGATTTATATAAAAGCACCTAAggctgggcgcagtggctcatgcctgtaatcctagcactttgggaggctgaggtgggaggattgcttgaggccagaagtttgagac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8178920 530 - 8369578 GAAACTGGAGGACATTAAAGAGCCCATGAAGTCAGCTGTACTTGCCATTTATTTAGTCTTGTTTGGAATAAAAGGTAAAGAATTCACAAATACCACCACCTCAGCACCTGTTTCAAAGGAAACATCAGGCTTCAGCTTGCAACATGATGTCgttacaattaagcaaatagcagaagcccc-cgtcagttgcttccttcttctggagaAGGC-GGGGAACTGTAATCCCCGGGGCTCCTGTGTTGAGTCTGAGAGGCAGAACAAAAAGAAAAGTGGCCTTTTCCATTCCACATCCTGGAGGTAATGGGTAGAGAAGAGATACCCACATTTCCAGATAGTGAACGCTGAGT-AAAGAAGCAGGACTGCCTGTCCTAGGAGACAACATAGAGATGCTTGCCAGGTCCTGAGTTCAGAATTTTGTTTTTGAGATTTATATAAAAGCACCTAAggctgggcgcagtggctcatgcctgtaatcctagcactttgggaggctgaggtgggaggattgcttgaggccagaagtttgagac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97826482 530 + 106955855 GAAACTGGAGGATGTTAAAAAGCCCATGAAGTCAGCTGTACTTGCCATTTATTTAGTCTTGTTTGGAATAAAAGGTAAAGAATTCACAAATACCACCACCTCAGCACCTGTTTCAAATGAAGCATCAGCCTTCAGCTTACAACATGATGTCTTTACAATTAAGCAAATAGCAGAAGCCCC-CATCAGCTGCTGTTTTCTTCTGGAGAAGGCAGGGGAACTGCAATCCCTGGGGCTCCTGTGTTGAGTCTGAGAGGCAGAACAAAAAGAAAAGTGGCCTTTTCCATTCCACATCCTGGAGGTAATGGGTAGAGAAGAGATACCCACATTTCCAGATAGTGAACGCTGAAT-AAAGAAGCAGGACTACCTGCCCTAGGAGACAACATAGAGACGCTTGCCAGATCCTGAGTTCAGAATTTTG-TTTTGAGATTTATATAAAAGCACCTAAggctgggtgcagtggctcatgcctgtaatcctagtactttgggagcctgaggtgggaggactgcttgaggccagaagtttgagac i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123951231 527 + 133663169 GAAACGGGAGGACGTTAAAAAGTCCCTCAAGTCAGCTATACTTGCCCTTTGTTTAGTCTTGTTTGGAATAAAAGGTGAAGAATTCACAAATACCACCACCTAAGCACCTGTTTCAAATGAAACATCAGCCTTCAGCTTGCAACATGATGTCTTTACAATTAAGCAAATAGCAGAAGCCCCACGTCAG----TTCTTCCTTCTGGAGAAGGCAGGGGAACTGCAATCCCCGGGGCTCCTGTGTTGAATCTGAGAGGTAGAACAAAAAGAAAAGTGGCCTCTTCCATTCCACATCCTGGAGGTAATGTGTAGAGAAGAGATACCCACATTTCCAGATAGTGAACACTGAA--AAAGAAGCAGGACCACCTGCCCTAGGAGACAACATAGAGATGCTTGCCAGGTCCTGAGTTCAAACTTTTGTTTTTGAGATTTATATAAAAGCACCTAAgactgggtgcagtggctcatgcctgcaatcctagcactttgggaggctgaggtgggaggattgcttgaggccagaagtttgagac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128198746 510 + 137757926 GAAACTGGAGGACGTTAAAAAGTCCCTGAAGTCAGC-----------------TAGTCTTGTTTGGAATAAAAGGTGAAGAATTCACAAATACCACCACCTAAGCACCTGTTTCAAATGAAACATCAGCCTTCAGCTTGCAACATGATGTCTTTACAATTAGGCAAATAGCAGAAGCCCCACGTCAG----TTCTTCCTTCTGGAGAAGGCGGGGGAACTGCAATCCCCGGGGCTCCTGTGTTGAATCTGAGAGGTAGAACAAAAGGAAAAGTGGCCTCTTCCATTCCACATCCTGGAGGTAATGTGTAGAGAAGAGATACCCACATTTCCAGATAGTGAACACTGAA--AAAGAAGCAGGACCACCTGCCCTAGGAGACAACATAGAGATGCTTGCCAGGTCCTGAGTTCAAACTTTTGTTTTTGAGATTTATATAAAAGCACCTAAgactgggtgcagtggctcatgcctgtaatcctagcactttgggaggccgaggtgggaggattgcttgaggccagaagtttgagac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10598785 527 - 16319837 GAAACTGGAGGACGTTAAAAAGTCCCTGAAGTCAGCTATACTTGCCCTTTGTTTAGTCTTGTTTGGAATAAAAGGTGAAGAATTCACAAATACCACCACCTAAGCACCTGTTTCAAATGAAACATCAGCCTTCAGCTTGCAACATGATGTCTTTACAATTAAGCAAATAGCAGAAGCCCCACGTCAG----TTCTTCCTTCTGGAGAAGGCAGGGGAACTGCAATCCCCGGGGCTCCGGTGTTGAATCTGAGAGGTAGAACAAAAAGAAAAGTGGCCTTTTCCATTCCACATCCTGGAGGTAATGTGTAGAGAAGAGATACCCACATTTCCAGATAGTGAATActgaa--aaagaagcaggactacctgccctaggagacaacatagagatgcttgccaggtcctgagttcaaaattttgtttttgAGATTTATATAAAAGCACCTAAgactgggtgcagtggctcatgcctgtaatcctagcactttgggaggctgaggtgggaggattgcttgaggccagaagtttgagac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12221065 527 + 20526591 GAAACTGGAGGACATTAAAAAGTCCCTGAAGTCAGCTATACTTGCCCTTTGTTTAGTCTTGTTTGGAATAAAAGGCGAAGAATTCACAAATACCACCACCTAAGCACCTGTTTCAAATGAAACATCAGCCTTCAGCTTGCAACATGATGTCTTTACAATTAAGCAAATAGCAGAAGCCCCACGTCAG----TTCTTCCTTCTGGAGAAGGCAGGGGAACTGCAATCCCCGGGGCTCCTGTGTTGAATCTGAGAGGTAGAACAAAAAGAAAAGTGGCCTTTTCCATTCCACATCCTGGAGGTAATGTGTAGAGAAGAGATACCCACATTTCCAGATAGTGAATACTGAA--AAAGAAGCAGGACTACCTGCCCTAGGAGACAACATAGAGATGCTTGCCAGGTCCTGAGTTCAAAATTTTGTTTTTGAGATTTATATAAAAGCACCTAAgactgggtgcagtggctcatgcctgtaatcctagcactttgggaggctgaggtgggaggattgcttgaggccagaagtttgagac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119193578 531 + 128539186 GAAACTGGAGGACATTAAAAAGTCCCTGAAATCAGCTATACTTGCCCTTTATTTAGTCTTGTTTGGAATAAAAGGTAAAGAATTCGCAAATACCACCACCTAAGCACCTGTTTCAAATGAAATATCAGCCTTCAGCTTGCAACATGGTCTCTTTACAATTAAGCAAATAGCAGAAGCCCCACGTCAGTT-CTTCTTCCTTCTGGAGAAGGCAGGGGAACTGCAATCCCCAGGGCTCCTGTGTTGAATCTGAGAGGCAGAACAAAAAGAAAAGTGGCCTTTTCCATTCCACATCCTGGAGGTAATGTGTAGAGAAGAGATACCCACATTTCCAGATAGTGAATACTGAAT-AAAGAAGCAGGACTACCTGCCCTAGGAGACAACATAGAGATGCTTGCCAGGTCCTGAGTTCAACATTTTGTTTTTGAGATTTATATAAAAGCACCTAAGATTgggtgcagtggctcatgcctgtaatcctagcacttcgggaggctgaggtgggaggattgcttgaggccagaagtttgagac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 507174 527 + 6255621 GAAACTGGAGGACATTAAAAAGTCCCTGAAATCAGCTATACTTGCCCTTTATTTAGTCTTGTTTGGAATAAAAGGTAAAGAATTTGCAAATACCACCACCTAAGCACCTGTTTCAAATGAAACATCAGCCTTCAGCTTGCAACATGATGTCTTTACAATTAAGCAAATAGCAGAAGCCCCACGTCAG----TTCTTCCTTCTGGAGAAGGCAGGGGAACTGCAATCCCCGGGACTCCTGTGTTGAATCTGAGAGGCAGAACAAAAAGAAAAGTGGCCTTTTCCATTCCACATCCTGGAGGTAATGTGTAGAGAAGAGATACCCACATTTCCAGATAGTGAATActgaa--aaagaagcaggacttcctgccctaggagacaacatagagatgcttgccaggtcctgagttcaaaattttgtttttgAGATTTATATAAAAGCACCTAAgactgggtgcagtggctcatgcctgtaatcctagcactttgggaggctgaggtgggaggattgcttgaggccagaagtttgagac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4569595 530 - 8658521 GAAACTAGAGGACATTAAAAAGTCCCTGAAGTCAGCTATACCTGTCCTTTATTTAGTCTTGTTTGGAATAAAAGGTAAAGAATTCACAAATACCACCACCTAAGCACCTGTTTCAAATGAAACATCAGCCTTCAGCTTGCAACATGATATCTTTACAATTAAGCAAATAGCAGAAGCCCCACGTCAGTC-CTTCTTCCTTCTGGAGAAGGCAGGGGAACTGCAATCCCCAGGCCTCCTGTGTTGAATCTGAGAGGTAGAACAAAAAGAAAAGTGGCCTTTTCCATTCCACATCCTGGAGGTAATGTGTAGAGAAGAGATACCCACATTTCCAGACAGTGAATActgaa--gaagaagcaggactgcctgccctaggagacaacagagagatgcttgccaggtcctgagttcaaaattttgtttttgAGATTTATATAAAAGCACCTAAgactgggtgcagtggctcatgcctgtaatcctagcactttgggaggctgaggtgggaggattgcttgaggccagaagtttgagac i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114773524 509 + 124281992 GAAACTGCAAGACA-TTAAAAACCCCTACAGTCAGCTATACTGGCCGTTTATTTAGTCTTGTTGGGAATAAAAAGTAAGTAATT--CAAATACCACCACCTAAGCACCCATTTCAAATGCACCCTCAGGCTTCAGCTTGTGA---AATGTCTTTACAATTAAGCAAATGGCAGAAGGCTC-----ACTTGCTTCTTTCTTCTGG-GAAGGCAGGGTAGCTGCAATCCCAGGGGCTTCTGTGTCCAAGCTGAGAGGCAGAACAAAAGGTAAAGTGGCCTTTTTCATTCCAAATCCTGGAGGTAATGGCTAGAGAAAAGACACCCACATTTCCAGATAGTGAAGGCTGAATGAAAGAGGCAGGACTCCTCACTCTCGGAGACA-----------CTTGCCAGGTCCCAAGTTCAGAATTTTG-TTTTGAGATGTAAATAAAAGCATGTAAggctgggtgtagtggctcaggctggtagtcccagcacattgggaggccaaggtgggaggactgcttgaggccagaagtgtgagac i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2831801 510 + 4466143 GAAACGGGAAGACATTTAAGAACCCCTAAAATCAGCTGTCCTTGCCGTTTATTTAGTCTTGTTTGGAATAAAAAGTAAAGAATT--CAAATACCACCACCAAAGCACCTATTTCAAATGCACCCTCAGCCTTCGGCTTGCGA---AATGTCTTTACAATGAAGCAAATGGCAGAAGACTC-----ACTTGCTTCTTTCTTTTGG-GAAGGCAGGGTAGCTGCAATCCCAGGGGCATCTGTGTTCAATCTGAGAGGCAGAACAAAAGGTAAAGTGGCCTTTTTCATTCCAAATCCTGGAGGTAATACCTAGAGAAGAGATACCCACATTTCCAGATAGTGAAGGCTGAATGAAAGAAGCAGGACTCCTCACTCTAAGAGACA-----------CCTGCCAGGTCCCAAGTTCAGAATTTTT-TATTGATATGTAAATAAAAGCATCTAAggctgggtgcagtggctcgggctggtaatcccagcacattgggaggccaaggtgggaggattgcttgaggccagaagtgtgagac i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1534001 505 + 5364348 GAAACTGGAAGACATTTAAAACCCCCTAAAGTCAGCTATACTTGCCGTTTATTTAGTCTTGTTTGGAATAAAAATTAAAGAATT--CAAATACCACCACCTAAGCACCTATTTCAAATGCACCCTCAGCCTTCAGCTTGAGA---AATGTCTTTACAATTAAGCAAATGGCAGAAGACTC-----ACTTGCTTCCTTCTTCTGG-GAAGGCAGGGTAGCTGCAATCCCAGGGGCTTCTGTGTCAAATCTGAGAGGCAGGACAAAAGGTAAAGTGGCCTTTTTCATTCCAAATCCTGGAGGTAATGCCTAGAGAAGAGATACCCACATTTCCGGATAGTGAAGGCTGAATGAAAGAAGCAGGACTCCTCACTCTAGGAGACA-----------CTTGCCAGGTCCCAAGTTCAGAAGTTTG-TTTTGAGATGTAAATAAAAGCATCTAAggctgggtgcagtggctcaggctg-----cttggcacattgggaggccaaggtgggaggattgcttgaggccagaagtgtgagac i aotNan1.NW_018491581v1 I 6 I 339 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M a score=1120761.000000 s hg38.chr12_KI270834v1_alt 28915 147 + 119498 cagcctaggcaacatggc-aaaaccccatttctttccaa----------acaaatacccaaaactaaaaaatttagctggctgtggtggcacacttctatagtcccagctacttaggaggctgaagtaggaggattgcttgaacctgggaggtggagg s panTro5.chr12 127315235 147 + 137163284 cagcctaggcaacatggc-aaaaccccatttctttccaa----------acaaatacccaaaattaaaaaatttagctggctgtggtggcacacttctatagtcccagctacttaggaggctgaagcaggaggattgcttgaacctgggaggtggagg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125666073 148 + 135337776 cagcctaggcaacatggcaaaaaccccatttctttccaa----------acaaatacccaaaactaaaaaatttagctggctgtggtggcacacttctatagtcccagctacttaggaggctgaagcaggaggattgcttgaacctgggaggtggagg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8179450 147 - 8369578 cagcctaggcaacatggc-aaaaccccatttctttccaa----------acaaatccccaaaactaaaaaatttagctggctgtggtggcacgcttctatagtcccagctacttaggaagctgaagtaggaggattgcttgaacctgggaggtggagg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97827012 147 + 106955855 tagcctaggcaacatggc-aaaaccccatttctttccaa----------acaaatccccaaaactaaaaaatttagctgggtgtggtggcacgcttctatagtcccagctacttaggaggctgaagtaggaggattgcttcaacctgggaggtggagg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123951758 147 + 133663169 cagcctaggcaacatgac-aaaatcccatttctttcaaa----------acaaatccccaaaaccaaaaaatttagctggttgtggtggcacgtttctatagtcccagctacttaggaggctgaagtgggaggattgcttgaacctgggaggtggagg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128199256 147 + 137757926 cagcctaggcaacatgac-aaaatcccatttctttcaaa----------acaaatccccaaaaccaaaaaatttagctggttgtggtggcacgtttctatagtcccagctacttaggaggctgaagtgggaggattgcttgaacctgggaggtggagg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10599312 147 - 16319837 cagcctaggcaacatgac-aaaatcccatttctttcaaa----------acaaatccccaaaaccaaaaaatttagctggttgtggtggcacgtttctatagtcccagctacttaggaggctgaagtgggaggattgcttgaacctgggaggtggagg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12221592 147 + 20526591 cagcctaggcaacatgac-aaaaccccatttctttctaa----------acaaatccccaaaaccaaaaaatttagctgggtgtggtggcacgcttctatagtcccagctacttaggaggctgaagtgggaggattgtttgaacctgggaggtggagg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119194109 147 + 128539186 cagcctaggcaacatgac-aaaaccccatttctttcaaa----------acaaatcccccaaaccaaaaaatttagctgggtgtggtggcacgcttctatagtcccagctacttaggaggctgaagtgggaggattgcttgaacctgggaggtggagg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 507701 147 + 6255621 cagcctaggcaacatgac-aaaatcccatttctttcaaa----------acaaatccccaaaaccaaaaaatttagctgggtgtggtggcacgcttctatagtcccagctacttaggaggctgaagtgggaggattgcttgaacctgggaggtggagg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4570125 147 - 8658521 cagcctaggcaacatgac-aaaaccccatttgtttcaaa----------acaaatccccaaaaccaaaaaattcagctaggtgtggtggcacgcttctatagtcccagctacttaggaggctgaagtgggaggattgcttgaacctgggaggtggagg i colAng1.NW_012116043v1 C 0 M 1230 s calJac3.chr9 114774033 157 + 124281992 cagcctaggcaacatggc-aaaaccccatttcttccaaaacaaacaaacacaaaccccccaaagcaaaaaattgagccgggcctggtggcatgctcctacagtcccaggtacttaggaggctgaagtgcgaagactgcttgagcctgggaggtggagg i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2832311 157 + 4466143 cagcctaggcaacatggc-aaaaccccatttcttccaaaacaaacaaacacaaaccccccaaaccaaaaaattgagctgggcctggtagcatgctcctacagtcccagctacttaggaggctgaagtgggaggattgcttgagcctgggaggtggagg i cebCap1.NW_016107484v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1534506 339 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=441826.000000 s hg38.chr12_KI270834v1_alt 29062 76 + 119498 ctgcaatgagccgagatggcactattacactccagcctgggtgacagagcgagaccctgtctcaaaa-aaaaaaaaa s panTro5.chr12 127315382 75 + 137163284 ctgcagtgagccgagatggcactattacactccagcctgggtgacagagcgagaccctgtctc-aaa-aaaaaaaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125666221 75 + 135337776 ctgcaatgagccgagatggcactattacactccagcctgggtgacagagcgagaccctgtctc-aaa-aaaaaaaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8179597 70 - 8369578 ctgcagtgagccgagatggtactattacactccagcctgggtgacagagcgagaccctgtctc-aaa-aaaa----- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97827159 75 + 106955855 ctgcaatgagcctggatggcactattacactccagcctgggtgacagagcgagaccctgtctc-aaa-aaaagaaaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123951905 72 + 133663169 ctgcaatgagccgagatggcactattaccctccagcctgggtgacagagtgagaccctgtcac-aaa-aca---aaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128199403 72 + 137757926 ctgcaatgagccgagatggcactattaccctccagcctgggtgacagagtgagaccctgtcac-aaa-aca---aaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10599459 72 - 16319837 ctgcaatgagccgagatggcactattaccctccagcctgggtgacagagtgagaccctgtcac-aaa-aca---aaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12221739 75 + 20526591 ctgcaatgagccgagatggcactattacactccagcctgggtgacagagtgagaccctgtctc-aaa-acaaacaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119194256 75 + 128539186 ctgcaatgagctgagatggcactattacactccagcctgggtgacagagtgagaccctgtctc-aaa-acaaacaaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 507848 75 + 6255621 ctgcaatgagccgagatggcactattacactccagcctgggtgacagagtgagaccctgtctc-aaa-acaaacaaa i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114774190 76 + 124281992 ctgcagtgagccgagatggcaccattgcactccagcctgggtgacagagtgagaccttgtctc-acacacacacaca i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2832468 76 + 4466143 ctgcagtgagccaagacagcaccattgcactccagcctgggtgacagagtgagaccctgtctg-aaacacacacaca i cebCap1.NW_016107484v1 C 0 I 56 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1534506 339 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M a score=-26585.000000 s hg38.chr12_KI270834v1_alt 29138 11 + 119498 aaataata--ata------------- s panTro5.chr12 127315457 9 + 137163284 aaata--a--ata------------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125666296 8 + 135337776 aaat---a--ata------------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8179667 4 - 8369578 -------a--aaa------------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97827234 11 + 106955855 aaaaaaaa--ata------------- i nomLeu3.chr10 C 0 I 1 s rheMac8.chr11 123951977 10 + 133663169 caaa---aCCCAA------------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128199475 10 + 137757926 caaa---aCCCAA------------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10599531 10 - 16319837 caaa---aCCCAA------------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12221814 8 + 20526591 caaa---a--caa------------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119194331 8 + 128539186 caaa---a--caa------------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 507923 8 + 6255621 caaa---c--aaa------------- i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114774266 17 + 124281992 ---------cacacacacaccacata i calJac3.chr9 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1534506 339 + 5364348 I e cebCap1.NW_016107484v1 2832544 56 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M a score=-3170.000000 s hg38.chr12_KI270834v1_alt 29149 4 + 119498 aaaa s panTro5.chr12 127315466 4 + 137163284 aaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125666304 4 + 135337776 aaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8179671 4 - 8369578 aaaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97827246 4 + 106955855 atat i nomLeu3.chr10 I 1 C 0 s rheMac8.chr11 123951987 4 + 133663169 atat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128199485 4 + 137757926 atat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10599541 4 - 16319837 atat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12221822 4 + 20526591 aTAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119194339 4 + 128539186 atat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 507931 4 + 6255621 acaa i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114774283 2 + 124281992 -ca- i calJac3.chr9 C 0 I 454 s cebCap1.NW_016107484v1 2832600 3 + 4466143 gtg- i cebCap1.NW_016107484v1 I 56 I 1 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1534506 339 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M a score=921781.000000 s hg38.chr12_KI270834v1_alt 29153 148 + 119498 GTATATATATATATAT--GCGCACCTAAAGGTCAAAGTAAATGTTCTTCCTGTAATAAGGAACCTTTGCTTTAGCGTAGATGGCCATACCC--CTCTGTAAGGTGGGGAGGAGGAAGTTTCTGCTCCTTCCCTCTGGCCGAGATCTGTTTTC s panTro5.chr12 127315470 148 + 137163284 GTATATATATATATAT--GCGCACCTAAAGGTCAAAGCAAATGTTCTTCCTGTAATAAGGAACCTTTGCTTTAGCGTAGATGGCCATACCC--CTCTGTAAGGTGGGGAGGAGGAAGTTTCCGCTCCTTCCCTCTGGCCGAGATCTGTTTTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125666308 148 + 135337776 GTATATATATATATAT--GCGCACCTAAAGGTCAAAGCAAATGTTCTTCCTGTAATAAGGAACCTTTGCTTTAGCGTAGATGGCCATACCC--CTCTGTAAGGTGGGGAGGAGGAAGTTTCCGCTCCTTCCCTCTGGCCGAGATCTGTTTTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8179675 148 - 8369578 GTATATATATATATAT--GCGCACCTAAAGGTCAAAGCAAATGTTCTTCCTGTAATAAGGAACCTTTGCTTTAGCGTAGATGGCCATACCC--CTCTGTAAGGTGGGGAGGAGGAAGGTTCCGCTCCTTCCCTCTGGCCGAGATCTGTTTTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97827250 148 + 106955855 atatatatatatatat--GCCCACCTAAAGGTCAAGGCAAATGTTCTTCCTGTAATAAGGAACCTTTGCTTTAGCGTAGATGGCCATACCC--CTCTGTAAGGTGGGGAGGAGGAAGGTTCTGCTCCTTCCCTCTGGCCGAGATCTGTTTTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123951991 150 + 133663169 atatatacatatatatGGGCACACCTAAAGGTCAAAGCAAATGTTCTTCTTGTGATAAGGAACCTTTGCCTTAGTGTAGATGACCATGCCC--CTCTGTAAGGTGGGGAGGAGGAAGGTTCCGCTCCTTCCCTCTGGCCGAAATCTGTTTTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128199489 150 + 137757926 atatatacatatatatGGGCACACCTAAAGGTCAAAGCAAATGTTCTTCTTGTGATAAGGAACCTTTGCCTTAGTGTAGATGACCATGCCC--CTCTGTAAGGTGGGGAGGAGGAAGGTTCCGCTCCTTCCCTCTGGCCGAAATCTGTTTTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10599545 150 - 16319837 atatatacatatatatGGGCACACCTAAAGGTCAAAGCAAATGTTCTTCTTGTGATAAGGAACCTTTGCCTTAGTGTAGATGACCATGCCC--CTCTGTAAGGTGGGGAGGAGGAAGGTTCCGCTCCTTCCCTCTGGCCGAAATCTGTTTTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12221826 142 + 20526591 ATATATATAT--------GCACACCTAAAGGTCAAGGCAAATGTTCTTCCTGTGATAAGGAACCTTTGCCTTAGTGTAGATGACCATGCCC--CTCTGTAAGGTGGGGAGGAGGAAGGTTCCGCTTCTTCCCTCTGGCCGAAATCTGTTTTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119194343 150 + 128539186 atatatatatatatat--GCACACTTAAAGGTCAAGGCAAATGTTCTTCCTGTGATAAGGAACCTTTGCCTTAACGTAGATGACCATCCCCCTCTCTGTAAGGTGGGGAGGAGAAAGGTTCTGCTTCTTCCCTCTGGCTGAAATCTGTTTTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 507935 148 + 6255621 aTATATATATATATAT--GCACACCTAAAGGTCAAGGCAAATGTTCTTCCTGTGATAAGGAACCTTTGCCTTAGTGTAGATGACCATGCGC--CTCTGTAAGGTGGGGAGGAGGAAGGTTCCGCTTCTTCCCTCTAGCTGAAATCTGTTTTC i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114774739 148 + 124281992 GTGTGTGTGTGTGTAT--ATGCACCTAAAGGCCTAGGAAAACGTTCTTCCTGTGATAAGGAACCTTCGCTTTAGCGTGGATGGCCATGCCC--CTCTGTAAGGTGGGGAGGAAGAAGTTTCTGCTCCTTCCCTCTGGCTGAGATCTGTTTCC i calJac3.chr9 I 454 C 0 s cebCap1.NW_016107484v1 2832604 148 + 4466143 gtgtgtgtgtgtgtAT--GCGcacctgaaggtctaggaaaacgttcttcctgtgataaggaacatttgctttagcgtggatggccatgccc--ctctgtaacgtggggaggaaGAAGGTTCTGCTCCTTCCCTCTGGCCAAGATCTGTTTTC i cebCap1.NW_016107484v1 I 1 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1534506 339 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M a score=447097.000000 s hg38.chr12_KI270834v1_alt 29301 58 + 119498 TTCTCCTTGCACGGCCCACCAGGACACTCAGCCTCCTAGGAGCAGGCCCACCCTG--------------------------GCC s panTro5.chr12 127315618 58 + 137163284 TTCTCCTTGCACGGCCCACCAGGACACTCAGCCTCCTAGGAGCAGGCCCACCCTG--------------------------GCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125666456 58 + 135337776 TTCTCCTTGCACGGCCCACCAGGACACTCAGCCTCCTAGGAGCAGGCCCACCCTG--------------------------GCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8179823 58 - 8369578 TTCTCCTTGCACAGCCCACCAGGACACTCAGCCTCCTAGGAGCAGGCCCACCCTG--------------------------GCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97827398 84 + 106955855 TTCTCCTTGCACGGCCCACCAGGACACTCAGCCTCCCAGGAGCAGGCCCACCCTGGCCCCTAGGCTGGATCGCAGCATTGCGCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123952141 84 + 133663169 TTCTCCTCGCACAGCCCACCAGGACACTCGGCCTCCCAGGAGCAGGCCCACCCCAGCCCCTAGGCTGGATTGCAGCGTTGTGCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128199639 84 + 137757926 TTCTCCTCGCACAGCCCACCAGGACACTCGGCCTCCCAGGAGCAGGCCCACCCCAGCCCCTAGGCTGGATTGCAGCGTTGTGCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10599695 84 - 16319837 TTCTCCTCGCACAGCCCACCAGGACACTCGGCCTCCCAGGAGCAGGCCCACCCCAGACCCTAGGCTGGATTGCAGCGTTGTGCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12221968 84 + 20526591 TTCTCCTCGCACGGCCCACCAGGACACTCGGCCTCCCAGGAGCAGGCCCACCCCGGCCCCTAGGCTGGATCGCAGCGTTGTGCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119194493 84 + 128539186 TTCTCCTCGCACGGCCCACCAGAACACTCGGCCTTCCAGGAGCAGGCCCACCCCGGCCCCTAGGCTGGATCTCAGTGTTGTGCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 508083 84 + 6255621 TTCTCCTCGCACGGCCCACCAGGACACTCGGCCTCCCAGGAGCAGGCCCACCCCGGCCCCTAGGCTGGATCGCAGCGTTGTGCC i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114774887 58 + 124281992 TTCTCCTCACACAGCCCACCAGGACACTCGGCCTCGCAGGAGCAGGCCCACCCTG--------------------------GCC i calJac3.chr9 C 0 I 25 s cebCap1.NW_016107484v1 2832752 58 + 4466143 TTCTCCTCACACAGCCCACCAGGACACTCGGCCTCGCAGGAGCAGGCCCGCCCCA--------------------------GCC i cebCap1.NW_016107484v1 C 0 I 25 s aotNan1.NW_018491581v1 1534845 58 + 5364348 TTCTCCTCACACAGCCCACCAGGACACTCGTCTTCGCAGGAGCAGGCCCACCCTG--------------------------GCC i aotNan1.NW_018491581v1 I 339 I 941 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M a score=552197.000000 s hg38.chr12_KI270834v1_alt 29359 89 + 119498 TCACTCCTCTGCCTGTGCTCCTATTTTATATTTTATTTAATTTTTACATTTATATACAATTTTGTATTGTATATTTCACTTTTATATAT s panTro5.chr12 127315676 89 + 137163284 TCACTCCTCTGCCTGTGCTCCTATTTTATATTTTATTTAATTTTTACATTTATATACAATTTTGTACTGTATATTTCACTTTTATATAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125666514 89 + 135337776 TCACTCCTCTGCCTGTGCTCCTATTTTATATTTTATTTAATTTTTACATTTATATACAATTTTGTACTGTATATTTCACTTTTATATAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8179881 89 - 8369578 TCACTCCTCTGCCTGTGCTCCTATTTTATATTTTATTTAATTTTTACATTTATATACAATTTTATATTGTATATTTCACTTTTATATAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97827482 89 + 106955855 TCACGCCTCTGCCTGTGTTCCCATTTTATATTTTATTTAATTTTTACATTTATATACAATTTTATATTGTATATTTCACTTTTATATAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123952225 89 + 133663169 TCACTCCTCTGCCTGTGCTCCTTTTTTATATTTTATTTAATTTTTATGTTTATATACAATTTTATATTTTATATTTCACTTTTAGATAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128199723 89 + 137757926 TCACTCCTCTGCCTGTGCTCCTTTTTTATATTTTATTTAATTTTTATGTTTATATACAATTTTATATTTTATATTTCACTTTTAGATAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10599779 89 - 16319837 TCACTCCTCTGCCTGTGCTCCTTttttatattttatttaatttttatgtttatatacaattttatattttatatttcacttttatatAT i macNem1.NW_012010578v1 C 0 I 1715 s cerAty1.NW_012001186v1 12222052 89 + 20526591 TCACTCCTCTGCCTGTGCTCCTTttttatattttatttaatttttatatttatatacaattttatattttatatttcacttttatatat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119194577 89 + 128539186 TCACTCCTCTGCCTGTGCTGCTTTTTTATATTTTATTTAATTTTTATGTTTATATACAATTTTATATTTTATATTTCACTTTTATATAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 508167 89 + 6255621 TCACTCCTCTGCCTCTGCTGCTTTTTTATATTTTATTTAATTTTTATGTTTATATACAATTTTATATTTTATATTTCACTTTTATATAT i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114774970 81 + 124281992 TCACTCCTCTGCCTATGCTCCTttcttatattttattttatttttacatttatatacaa--------tttatattttacttttatatat i calJac3.chr9 I 25 C 0 s cebCap1.NW_016107484v1 2832835 82 + 4466143 TCACTCCTCTGCCTGTGCTCCtttcttatattttattttatttttacatttatatacaat-------tttatattttacttttatatat i cebCap1.NW_016107484v1 I 25 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1534903 941 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M a score=244639.000000 s hg38.chr12_KI270834v1_alt 29448 44 + 119498 TTTATTTTACATTTTTATTTTCATATGAAACTTTGAAAAATGCA s panTro5.chr12 127315765 44 + 137163284 TTTATTTTACATTTTTATTTTCATATGAAACTTTGAAAAATGCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125666603 44 + 135337776 TTTATTTTACATTTTTATTTTCATATGAAACTTTGAAAAATGCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8179970 44 - 8369578 TTTATTTTACATTTTTATTTTCATATGAAATTTTGAAAAATGCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97827571 44 + 106955855 TTTATTTTACATTTTTATTTTCATATGAAATTTTGAAAAATGCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123952314 44 + 133663169 TTTATTTTACATTTTTATTTTCATATGAAATTTTGAAAAATGCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128199812 44 + 137757926 TTTATTTTACATTTTTATTTTCATATGAAATTTTGAAAAATGCA i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12222141 44 + 20526591 tttattttacatttttattttcatatgaaaatttgaaaaatgca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119194666 44 + 128539186 TTTATTTTACATTTTTATTTTCATATGAAATTTTGAAAAATGCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 508256 44 + 6255621 TTTATGTTACATTTTTATTTTCATATGAAATTTTGAAAAATGCA i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114775051 44 + 124281992 tttattttatattttaattttcatatGGAAATTTGAAAACTGCA i calJac3.chr9 C 0 I 1 s cebCap1.NW_016107484v1 2832917 44 + 4466143 tttattttatatttttattttCATGTGGAAATTTGAAAATTGCA i cebCap1.NW_016107484v1 C 0 I 34 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1534903 941 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=111945.000000 s hg38.chr12_KI270834v1_alt 29492 29 + 119498 TA------TTTACATTTATATTATTTATATGATCA s panTro5.chr12 127315809 29 + 137163284 TA------TTTACATTTATATTATTTATATGATCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125666647 29 + 135337776 TA------TTTACATTTATATTATTTATATGATCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180014 29 - 8369578 TA------TTTACATTTATATGATTTATATGATCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97827615 29 + 106955855 TA------TTTACGTTTATATGATTTATATGATCG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123952358 29 + 133663169 TA------TTTAAGTTTATATGATTTATATGATCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128199856 29 + 137757926 TA------TTTAAGTTTATATGATTTATATGATCA i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12222185 29 + 20526591 ta------tttaagtttatatgatttatatgatca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119194710 29 + 128539186 TA------TTTAAGTTTATATGGTTTATATGATCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 508300 29 + 6255621 TA------TTTAAGTTTATATGATTTATATGATCA i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114775096 35 + 124281992 TATGAAATTTTGTTTTTAAAAAGTTTATATGATTG i calJac3.chr9 I 1 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1534903 941 + 5364348 I e cebCap1.NW_016107484v1 2832961 34 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=685444.000000 s hg38.chr12_KI270834v1_alt 29521 171 + 119498 TTATTAAATATGAAATATGAAATTTCATATA-TTCATATTACACATAATATCTTATACATATTTTATACTATATAATATACA---TAACATtttatataca-tttataaa-tttatataatttataAATAATACAAATATA-------------ATTAATTTATATGAATGATATAA---AATATATAAATTT s panTro5.chr12 127315838 171 + 137163284 TTATTAAATATGAAATATGAAATTTCATATA-TTCATATTACACATAATATCTTATACATATTTTATACTATATAATATACA---TAACATtttatataca-tttataaa-tttatataatttataAATAATACAAATATA-------------ATTAATTTATATGAATGATATAA---AATATATAAATTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125666676 171 + 135337776 TTATTAAATATGAAATATGAAATTTCATATA-TTCATATTTCACATAATATCTTATACATATTTTATACTATATAATATACA---TAACATtttatataca-tttataaa-tttatataatttataAATAATACAAATATA-------------ATTAATTTATATGAATGATATAA---AATATATAAATTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180043 171 - 8369578 TTATTAAATATGAAATATGAAATTTCATATA-TTTATATTACACATAATATCTTATACATATTTTATACTATATAATATACA---TAACATtttatataca-tttataaa-tttatataatttataAATAATACAGATATA-------------ATTAATTTATATAAATGATATCA---AATATATAAATTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97827644 168 + 106955855 CTATTAAATAGGAAATATGAAATTTCATATA-TTT-TATTACACATAA-----TATACATATTTTATACTACATAATATATG---TAACATtttatataca-tttataaa-tttatataatttataaacaatataaatata---------atttattaatttatataaatgatat-a---aatatataaattt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123952387 179 + 133663169 TTATT-------AAATATGAAATTTTATATA-TTTGTATTACATATAATATTTTATATATA-TTTACACTATATAATATACATATTAACATTTTATATAAATTTTATAAA-TTTATATAATTTATAAACAATACAAATATAATTTATTTAATTTATTAATTTATATAAATGATAT-A---CATATATACATTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128199885 179 + 137757926 TTATT-------AAATATGAAATTTTATATA-TTTGTATTACATATAATATTTTATATATA-TTTACACTATATAATATACATATTAACATTTTATATAAATTTTATAAA-TTTATATAATTTATAAACAATACAAATATAATTTATTTAATTTATTAATTTATATAAATGATAT-A---CATATATACATTT i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12222214 180 + 20526591 ttattaaatatgaaatatgaaattttatatattttgtattacatataa---tttgtacata-tttacactatataatatacatattaacattttatataaattttctaaa-tttatataatttataaacaatacaaatataatttatgcaatttattaatttatataaatgat--------atatatacattt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119194739 180 + 128539186 TTATTAAATATGAAATATGAAATTTTATATATTTTGTATTACATATAT---TTTGTACGTG-TTTACACTATATAATATACATATTAACATTTTATATAAATTTTATAAA-TTTATATAATTTATAAACAATACAAATATAATTTATGTAATTTATTAATTTATATAAATGAT--------ATATATACATTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 508329 181 + 6255621 TTATTAAATATGAAATATGAAATTTTATATATTTTGTATTACATATAT---TTTGTATGTA-TTTACACTATATAATATACATATTAACATTTTATAGAAATTTTATAAATTTTATATAATTTATAAACAATACAAATATAATTTATGTAATTTATTAATTTATATAAATGAT--------ATATATACATTT i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114775131 174 + 124281992 -TATTAAATGTGAAATATGAA---TTATGTA-TTT-Tatatcacataa---tttatgcatattttatactatataatatgcatattaacattttatgtaaattttataaa-tttatataatttataaataatacaaatata---------atttataaattcatataaattatataaaataatataaaaactt i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2832995 175 + 4466143 TTATTAAATGTGAAATATGAA---TTATATT-TTA-TATTACATATAA---TATATGCATATTTTATACTATATAATATGCATATTAATATTttatgtaaattttataaa-tttatataatttataaataatacaaatatg---------acttataaattcatataaattatataaaataatataaaAACTT i cebCap1.NW_016107484v1 I 34 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258599 0 + 7922563 C e aotNan1.NW_018491581v1 1534903 941 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=371906.000000 s hg38.chr12_KI270834v1_alt 29692 88 + 119498 TATAAAATTTAATTTATATAAAATTGTAATATAT--GTATATAATTTATATATAA---TTTTATATTTCATTTTAAATTTTATATTTCATTTA s panTro5.chr12 127316009 84 + 137163284 TATAAA----AATTTATATAAAATTGTAATATAT--GTATATAATTTATATATAA---TTTTATATTTCATTTTAAATTTTATATTTCATTTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125666847 84 + 135337776 TATAAA----AATTTATATAAAATTGTAATATAT--GTATATAATTTATATATAA---TTTTATATTTCATTTTAAATTTTATATTTCATTTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180214 86 - 8369578 TATAAAATTTAATTTATATAAAATTATA--ATAT--GTATATAATTTATATATAA---TTTTATATTTCATTTTAAATTTTATATTTCATTTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97827812 69 + 106955855 tataaaattttatttatataaaattgtaatatat--gtatataatttatataT----------------------AATTTTATATTTCATTTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123952566 81 + 133663169 TATAAAATTTCATTTATATAAAATTATA--ATAT--GTATATCATTTATATATAA----TTTATATTTCATTTTAAATTTTATATTTCA---- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128200064 83 + 137757926 TATAAAATTTCATTTATATAAAATTATAATATAT--GTATATCATTTATATATAA----TTTATATTTCATTTTAAATTTTATATTTCA---- i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12222394 83 + 20526591 tataaaatttcatttatataaaattataatatat--gtatatcatttatatataa----tttatgtttcattttaaattttatatttca---- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119194919 83 + 128539186 TATAAAATTTCATTTATATAAAATTATAATATAT--GTATATCATTTATATATAA----TTTATGTTTCATTTTAAATTTTATATTTCA---- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 508510 87 + 6255621 TATAAAATTTCATTTATATAAAATTATAATATGT--GTATATCATTTATATATAA----TTTATGTTTCATTTTAAATTTTATATTTCATAtg i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114775305 88 + 124281992 cataaatttttatttatatgaaattttaatatat--gtatacagtttatataATT---TTTCATATTTCATTTTAAAATTTATATTTCATTTA i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2833170 88 + 4466143 TATACATTTTTATTTATATGAAATTTTAATATAT--GTATACAATTTATATAATT---TTTCATATTTCATTTTAAAATTTATATTTCATTTA i cebCap1.NW_016107484v1 C 0 I 407 s otoGar3.GL873618 4258599 92 + 7922563 TAGAATGtttgttttatttgttatattaatatattattgttttattaatatattttacttttat-ttttatataaaattttttacttcacttt i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e aotNan1.NW_018491581v1 1534903 941 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=913665.000000 s hg38.chr12_KI270834v1_alt 29780 212 + 119498 AATATATATGTATGTGTATATATA--TGTGTGTGTGTGTGTATATCTATCTATCTATCTATCtttttttcgagacagagtttcactcttgtcac---gccaggagtacgatggcgcaatctcagttcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacctgccgccacacccagc s panTro5.chr12 127316093 212 + 137163284 AATATATATGTATGTGTATATATA--TGTGTGTGTGTGTGTATATCTATCTATCTATCTATCtttttttcgagacagagtttcactcttgtcac---gccaggagtacgatggcgcaatctcagttcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacctgccgccacacccagc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125666931 212 + 135337776 AATATATATGTATGTGTATATATA--TGTGTGTGTGTGTGTATATCTATCTATCTATCTATCtttttttcgagacagagtttcactcttgtcac---gccaggagtacgatggcgcaatctcagttcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacctgccgccacacccagc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180300 210 - 8369578 AATATATATGTGTGTGTATATATA--TGTGTGTGTGTGTGTGTA--TATCTATCTATCTATCtttttttcgagacagagtttcactcttgtcac---gccaggagtacaatggcgcaatctcagttcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacctgccaccacacccagc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97827881 215 + 106955855 AATATAtatgtatgtgtatgtgtg--tgtgtgtgtgtgtgtgtgtgtgtgtATATATATATCttttttttgggacagagtttcactcttgtcacccaggctggagtacaatggcgcaatctcagctcgctgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcacctgccaccacgcccagc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123952647 199 + 133663169 ------TATGTATGTGTATATATA--TGTGTGTGTGTGTATGTA----------TATATATAtttttttcgagacagagtttcactcttgtcacccaggctggagtgcaatggtacaatctcagctcactgtaacttccacctcccgggttcaagtgattctcctgcctcagcctcccgaatagctgggatttcaggcacctgccgccacacccagc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128200147 199 + 137757926 ------TATGTATGTGTATATATA--TGTGTGTGTGTGTATGTA----------TATATATAtttttttcgagacagagtttcactcttgtcacccaggctggagtgcaatggtacaatctcagctcactgtaacctccacctcccgggttcaagtgattctcctgcctcagcctcccgaatagctgggatttcaggcacctgccgccacacccagc i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12222477 201 + 20526591 ------tatgtatgtgtatatatatgtgtgtgtgtgtgtatgtg----------tatatatatttttttcaagacagagtttcactcttgtcacccaggctggagtgcaatggtgaaatctcagctcgctgtaacctccgcctgctgggttcaagtgattctcttgcctcagcctcccgaatagctgggactacaggcacctgccaccacacccagc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195002 197 + 128539186 ------TGTGTATGTGTATATA----TATGTGTGTGTGTATGTA----------TATATATATAtttttcaagacagagtttcactcttgtcacccaggctggagtgcaatggtgaaatctcagctcactgtaacctccgcctcctgggttcaagtgattctcctgcctcagcctcccgaatagctgggattacaggcacttgccaccacacccagc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 508597 203 + 6255621 tatgtgtgtgtatgtgtgtgtg----tgtgtgtgtgtgtatgtA----------TATATATAtttttttcaagacagagtttcactcttgtcacccaggctggagtgcaatggtgaaatctcagctcactgtaacctccgcctcctgggttcaggtgattctcctgcctcagcctcccgaatagctgggattacaggcacttgccaccacacccagc i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114775393 189 + 124281992 ----------AAtgtgtgtgtgtg--tgtgtgtgtgtgtgtgtA----------------TCtttttctcgagacagagtttcacttttgttgcccaggctggagtgcaatggcacgatctcagctcactgcaacctccgcctcccgggttcaagagattctcctgcctcagcctcctgagtagctgggattacaggcacccgccgccacaccaggc i calJac3.chr9 C 0 C 0 s otoGar3.GL873618 4258691 201 + 7922563 ------tatttgtttcattttaga--tttttattttCATACATA---AAACttttttttttttctttttagaggcagagtctcactttgttcccttgg--taaagtgccgtggc---atcacagctcacagcaacctccagttcttgggcttaggcgattcttttgcctcagcctccttagtagctgggactacaggcacctgtcacaatgcccagc i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e aotNan1.NW_018491581v1 1534903 941 + 5364348 I e cebCap1.NW_016107484v1 2833258 407 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=282062.000000 s hg38.chr12_KI270834v1_alt 29992 60 + 119498 taatttttgtgtttttagtagagatgtgatttcaccatgtcggccaggctgatctcgaac s panTro5.chr12 127316305 60 + 137163284 taatttttgtgtttttagtagagatgtgatttcaccatgtcggccaggctgatctcgaac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667143 60 + 135337776 taatttttgtgtttttagtagagatgtgatttcaccatgtcggccaggctgatctcgaac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180510 60 - 8369578 taatttttgtgtttttagtagagatgtgatttcaccatgtcggccaggctgatctcgaac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97828096 59 + 106955855 taatttttgtatttttagtagagatgtgatttcaccatgt-ggccaggctgatctcagac i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123952846 60 + 133663169 taatctttgtatttttactagagaagtggtttcaccatgtcagccaggttgatctccaac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128200346 60 + 137757926 taatctttgtatttttactagagaagtggtttcaccatgtcagccaggttgatctccaac i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12222678 60 + 20526591 taatctttgtatttttactagagatgtggtttcaccatgtcagccaggttgatctccaac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195199 60 + 128539186 taatctttgtatttttactagagacgtggtttcaccatgtcagccaggttgatctccaac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 508800 58 + 6255621 taatctttgtatttttactagagacatggtgaaacca--tcagccaggttgatctccaac i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114775582 60 + 124281992 gaatttttgtattttcagtagagatggggtttcaccatattgaccaggctgctctcaaac i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2833665 60 + 4466143 taatttttgtattttcagtagagatggggtttcaccatgttgatcaggctgccctcaaac i cebCap1.NW_016107484v1 I 407 C 0 s otoGar3.GL873618 4258892 38 + 7922563 tattttttgt--------------tgcagtttgtctg--------gggctgggtttgaac i otoGar3.GL873618 C 0 I 38 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e aotNan1.NW_018491581v1 1534903 941 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=274494.000000 s hg38.chr12_KI270834v1_alt 30052 52 + 119498 t-----cctcaggttatccacccacctcagcctcccaaagtgctggaattacaggca s panTro5.chr12 127316365 52 + 137163284 t-----cctcaggttatccacccacctcagcctcccaaagtgctggaattacaggca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667203 52 + 135337776 t-----cctcaggttatccacccacctcagcctcccaaagtgctggaattacaggca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180570 52 - 8369578 t-----cctcaggttatccacccacctcagcctcccaaagtgctggaattacaggca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97828155 51 + 106955855 t-----cctcaggttatccaccc-cctcagcctcccaaagtgctggaattacaggca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123952906 57 + 133663169 tcctgacctcaggttatccgcctgcctcagcctcccaaagtgctgggattacaggca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128200406 57 + 137757926 tcctgacctcaggttatccgcctgcctcagcctcccaaagtgctgggattacaggca i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12222738 57 + 20526591 tcctgacctcaggttatccgcctgcctcagcctcccaaagtgctgggattacaggca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195259 57 + 128539186 tcctgacctcaggttatccgcctgcctcagcctcccaaagtgctgggattacaggca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 508858 57 + 6255621 tcctgacctcaggttatccgcctgcctcagcctcccaaagtgctgggattacaggca i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114775642 57 + 124281992 tcctgacctcagattatccgcccacttcagcctcccaaagtgctgggattacaggtt i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2833725 57 + 4466143 tcctgacctcagattatgctctcacttcaggctcccaaagtgctgagattataggtt i cebCap1.NW_016107484v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4258930 38 + 7922563 I e aotNan1.NW_018491581v1 1534903 941 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=77623.000000 s hg38.chr12_KI270834v1_alt 30104 14 + 119498 tgagccactgcacc s panTro5.chr12 127316417 14 + 137163284 tgagccactgcacc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667255 14 + 135337776 tgagccactgcacc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180622 14 - 8369578 tgagccactgcacc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97828206 14 + 106955855 tgagccactgcacc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123952963 14 + 133663169 tgagccaatgcacc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128200463 14 + 137757926 tgagccaatgcacc i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12222795 14 + 20526591 tgagccaatgcacc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195316 14 + 128539186 tgagccaatgcacc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 508915 14 + 6255621 tgagccaatgcacc i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114775699 14 + 124281992 tgacacactgcacc i calJac3.chr9 C 0 I 273 s cebCap1.NW_016107484v1 2833782 14 + 4466143 tgagatactgcacc i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4258968 14 + 7922563 tgagccacaggcgc i otoGar3.GL873618 I 38 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e aotNan1.NW_018491581v1 1534903 941 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=386643.000000 s hg38.chr12_KI270834v1_alt 30118 84 + 119498 cggccATATATGTGTATATTATATAATATGAAGTACATATT-----ATATGAA---ATATATGAA--ATATATATTTTATATTTTATGTT---TAAT s panTro5.chr12 127316431 84 + 137163284 cggccATATATGTGTATATTATATAATATGAAGTACATATT-----ATATGAA---ATATATGAA--ATATATATTTTATATTTTATGTT---TAAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667269 84 + 135337776 cggccATATATGTGTATATTATATAATATGAAGTACATATT-----ATATGAA---ATATATGAA--ATATATATTTTATATTTTATGTT---TAAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180636 86 - 8369578 cggccATATATGTGTATATTATATAATATGAAGTACATATT-----ATATGAA---ATATATGAAATATATATATTTTATATTTTATGTT---TAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97828220 86 + 106955855 aggccATATATGTGTATATTATATAATATGAAGTACATATT-----ATACGAA---ATATATGAAATATATATATTTTATATTTTATGTT---TAAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123952977 86 + 133663169 cggccATATATGTGTATATTATATAATATGAAGTACATATT-----ATATGAA---ATATATGAAATATACATATTTTATATTTTATGTT---TAAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128200477 86 + 137757926 cggccATATATGTGTATATTATATAATATGAAGTACATATT-----ATATGAA---ATATATGAAATATACATATTTTATATTTTATGTT---TAAT i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12222809 89 + 20526591 cggccatatatgtgtatattatataatatgaagtacatatt-----atatgaa---atatatgaaatatacatattttatattttatgtttaataat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195330 89 + 128539186 cagccATATATGTGTATATTATATAATATGAAGTACATATT-----ATATGAA---ATATGTGAAATATACATATTTTATATTTTATGTTTAATAAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 508929 86 + 6255621 cggccATATATGTGTATATTATATAATATGAAGTACATATT-----ATATGAA---ATATATGAAATATACATATTTTATATTTTATGTT---TAAT i manLeu1.NW_012103587v1 C 0 C 0 s cebCap1.NW_016107484v1 2833796 91 + 4466143 tcgccATATATATGTATATTATATAATATGAAGTACATATTATATGATATGAA---ATATATGGAATATATATATATTATATTTCATGTT---TAAT i cebCap1.NW_016107484v1 C 0 I 69 s otoGar3.GL873618 4258982 77 + 7922563 tgcccATACATAAAACATTTTTAAATTTTGAAGAATGGAGT-----GTGAGAATTTACattt-----atataaattgtatatttcat---------- i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e aotNan1.NW_018491581v1 1534903 941 + 5364348 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114775713 273 + 124281992 I e colAng1.NW_012116043v1 4570272 1230 - 8658521 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=135531.000000 s hg38.chr12_KI270834v1_alt 30202 53 + 119498 CTCATGTAAAC--TATTTTATATAA---TTTATATTTATTTACATATTAATATAAAAT s panTro5.chr12 127316515 53 + 137163284 CTCATATAAAC--TATTTTATATAA---TTTATATTTATTTACATATTAATATAAAAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667353 53 + 135337776 CTCATATAAAC--TATTTTATATAA---TTTATATTTATTTACATATTAATATAAAAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180722 53 - 8369578 CTCATATAAAC--TGTTTTATATAA---TTTATATTTATTTACATATTAATATAAAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97828306 51 + 106955855 CTCATATAAACTTTATTTTATATAA---TTTA----TATTTACATATTAACATAAAAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953063 46 + 133663169 CTCATATAAACTT--TTTTATATAA---TTTA----TATTTACATATT---TTAATAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128200563 43 + 137757926 CTCATATAAAC-----TTTATATAA---TTTA----TATTTACATATT---TTAATAT i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12222898 48 + 20526591 ctcatataaactttattttatataa---ttta----tatttacatatt---ttaatat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195419 48 + 128539186 CTCATATAAACTTTATTTTATATAA---TTTA----TATTTACATATT---TTAATAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509015 48 + 6255621 CTCATATAAACTTTATTTTATATAA---TTTT----TATTTACATATT---TTAATAT i manLeu1.NW_012103587v1 C 0 C 0 s otoGar3.GL873618 4259059 49 + 7922563 -------aaaa--ttttttacataaaatttcatttttagtaaaagttttatgtaaaat i otoGar3.GL873618 C 0 I 8 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e aotNan1.NW_018491581v1 1534903 941 + 5364348 I e cebCap1.NW_016107484v1 2833887 69 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114775713 273 + 124281992 I e colAng1.NW_012116043v1 4570272 1230 - 8658521 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=109148.000000 s hg38.chr12_KI270834v1_alt 30255 29 + 119498 AAAAAATAAAATTATATAATTTCTGTATA s panTro5.chr12 127316568 29 + 137163284 AAAAAATAAAATTATATAATTTCTGTATA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667406 29 + 135337776 AAAAAATAAAATTATATAATTTCTGTATA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180775 29 - 8369578 AAAAAATAAAATTATATAATTTCTGAATA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97828357 27 + 106955855 --AAATTAAAATTATATAATTTCTGTATA i nomLeu3.chr10 C 0 I 242 s rheMac8.chr11 123953109 29 + 133663169 AAAAATTAAAATTATGTAATTTCTGTATA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128200606 29 + 137757926 AAAAATTAAAATTTTATAATTTCTGTATA i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12222946 29 + 20526591 aaaaattaaaattatgtaatttctgtata i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195467 29 + 128539186 AAAAATTAAAATTATGTAATTTCTGTATA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509063 29 + 6255621 AAAAATTAAAATTATGTAATTTCTGTATA i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114775986 18 + 124281992 aaaaaataaa--taaataaa--------- i calJac3.chr9 I 273 C 0 s otoGar3.GL873618 4259116 22 + 7922563 aaaaattgaaattata-GATTTC------ i otoGar3.GL873618 I 8 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e aotNan1.NW_018491581v1 1534903 941 + 5364348 I e cebCap1.NW_016107484v1 2833887 69 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=10010.000000 s hg38.chr12_KI270834v1_alt 30284 2 + 119498 TA s panTro5.chr12 127316597 2 + 137163284 TA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667435 2 + 135337776 TA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180804 2 - 8369578 TA i gorGor5.CYUI01015152v1 C 0 I 10 s nomLeu3.chr10 97828626 2 + 106955855 TA i nomLeu3.chr10 I 242 C 0 s rheMac8.chr11 123953138 2 + 133663169 TA i rheMac8.chr11 C 0 I 1 s macFas5.chr11 128200635 2 + 137757926 TA i macFas5.chr11 C 0 I 1 s cerAty1.NW_012001186v1 12222975 2 + 20526591 ta i cerAty1.NW_012001186v1 C 0 I 1 s chlSab2.chr11 119195496 2 + 128539186 TA i chlSab2.chr11 C 0 I 1 s manLeu1.NW_012103587v1 509092 2 + 6255621 TA i manLeu1.NW_012103587v1 C 0 I 1 s calJac3.chr9 114776004 2 + 124281992 ta i calJac3.chr9 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4259138 0 + 7922563 C e aotNan1.NW_018491581v1 1534903 941 + 5364348 I e cebCap1.NW_016107484v1 2833887 69 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=3804.000000 s hg38.chr12_KI270834v1_alt 30286 10 + 119498 -AAAATATATA s panTro5.chr12 127316599 10 + 137163284 -TAAATATATA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667437 10 + 135337776 -TAAATATATA i panPan2.chr12 C 0 C 0 s nomLeu3.chr10 97828628 9 + 106955855 -AAAATAAAA- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953141 10 + 133663169 -GTATTATATA i rheMac8.chr11 I 1 I 1 s macFas5.chr11 128200638 10 + 137757926 -GTATTATATA i macFas5.chr11 I 1 I 1 s cerAty1.NW_012001186v1 12222978 10 + 20526591 -gtattatata i cerAty1.NW_012001186v1 I 1 I 1 s chlSab2.chr11 119195499 10 + 128539186 -GTATTATATA i chlSab2.chr11 I 1 I 1 s manLeu1.NW_012103587v1 509095 10 + 6255621 -GTATTATATA i manLeu1.NW_012103587v1 I 1 I 1 s calJac3.chr9 114776006 9 + 124281992 -aaaataaaa- i calJac3.chr9 C 0 I 19 s otoGar3.GL873618 4259138 9 + 7922563 AGATTTACT-- i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e aotNan1.NW_018491581v1 1534903 941 + 5364348 I e cebCap1.NW_016107484v1 2833887 69 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I e gorGor5.CYUI01015152v1 8180806 10 - 8369578 I a score=79540.000000 s hg38.chr12_KI270834v1_alt 30296 69 + 119498 ATACATATATTCAGA------AATTATATA------ATTTTAAATTA--ATTTCTGTAATTTAaatttaaattaatttaaatt---------- s panTro5.chr12 127316609 69 + 137163284 ATACATATATTCAGA------AATTATATA------ATTTTAAATTA--ATTTCTGTAATTTAaatttaaattaatttaaatt---------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667447 69 + 135337776 ATACATATATTCAGA------AATTATATA------ATTTTAAATTA--ATTTCTGTAATTTAaatttaaattaatttaaatt---------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180816 69 - 8369578 ATTTATATATACAGA------AATTATATA------ATTTTAAATTA--ATTTCTGTAATTTAaatttaaattaatttaaatt---------- i gorGor5.CYUI01015152v1 I 10 C 0 s nomLeu3.chr10 97828637 75 + 106955855 ATAAATATGTTTTAATTATATAATTATATA------AATTAAAATTATTAATTAATTAATTAAAATATAAA--AATATATCTT---------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953152 39 + 133663169 TTATATATATACAGG------ACTTATATA------ATTTTAAATTA------------------TATA------------------------ i rheMac8.chr11 I 1 C 0 s macFas5.chr11 128200649 39 + 137757926 TTATATATATACAGG------ACTTATATA------ATTTTAAATTA------------------TATA------------------------ i macFas5.chr11 I 1 C 0 s cerAty1.NW_012001186v1 12222989 39 + 20526591 ttatatatatacagg------acttatata------attttaaatta------------------tata------------------------ i cerAty1.NW_012001186v1 I 1 C 0 s chlSab2.chr11 119195510 39 + 128539186 TTATATATATGCAAG------ACTTATATA------ATTTTAAATTA------------------TATA------------------------ i chlSab2.chr11 I 1 C 0 s manLeu1.NW_012103587v1 509106 37 + 6255621 TTATATATA--CAGG------ACTTATATA------ATTTTAAATTA------------------TATA------------------------ i manLeu1.NW_012103587v1 I 1 C 0 s calJac3.chr9 114776034 39 + 124281992 aaatatgtaaaaaca------aattacata------attttaagtta------------------tata------------------------ i calJac3.chr9 I 19 C 0 s otoGar3.GL873618 4259147 82 + 7922563 GTATATTTGTACATT------AACTATGTATAACAGTTTTTAAAATA-----CATAAAATTTCATTTTATATTTCATAAACTTGAGGGTCATC i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e aotNan1.NW_018491581v1 1534903 941 + 5364348 I e cebCap1.NW_016107484v1 2833887 69 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e colAng1.NW_012116043v1 4570272 1230 - 8658521 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=133843.000000 s hg38.chr12_KI270834v1_alt 30365 18 + 119498 aatttCTGTAA------------TTTAAAA s panTro5.chr12 127316678 18 + 137163284 aatttCTGTAA------------TTTAAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667516 18 + 135337776 aatttCTGTAA------------TTTAAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180885 18 - 8369578 aatttCTGTAA------------TTTAAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97828712 17 + 106955855 AA-TTATATAA------------TTTAAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953191 18 + 133663169 AATTTCTGTAA------------TTTAAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128200688 18 + 137757926 AATTTCTGTAA------------TTTAAAA i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12223028 18 + 20526591 catttctgtaa------------tttaaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195549 18 + 128539186 AATTTCTGTAA------------TTTAAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509143 18 + 6255621 AATTTCTGTAA------------TTTAAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4571508 18 - 8658521 AATTTCTGTAA------------TTTAAAA i colAng1.NW_012116043v1 M 1230 C 0 s calJac3.chr9 114776073 18 + 124281992 aatttttgtaa------------tttgaaa i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2833956 18 + 4466143 AATTTTTGTAA------------TTTGAAA i cebCap1.NW_016107484v1 I 69 C 0 s aotNan1.NW_018491581v1 1535844 18 + 5364348 AATTTTTGTAA------------TTTGAAA i aotNan1.NW_018491581v1 I 941 C 0 s otoGar3.GL873618 4259229 30 + 7922563 AAGTTCTGAAAGGCCAGGTATTCTTTAAAA i otoGar3.GL873618 C 0 I 334 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e saiBol1.JH378194 414265 7043 - 9212255 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=93946.000000 s hg38.chr12_KI270834v1_alt 30383 16 + 119498 TTATGTAATTTTAAAT----- s panTro5.chr12 127316696 16 + 137163284 TTATGTAATTTTAAAT----- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667534 16 + 135337776 TTATGTAATTTTAAAT----- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180903 16 - 8369578 TTATGTAATTTTAAAG----- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97828729 12 + 106955855 TTATA----ATTAAAT----- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953209 16 + 133663169 TTATATAATTTTAAAT----- i rheMac8.chr11 C 0 I 5 s macFas5.chr11 128200706 16 + 137757926 TTATATAATTTTAAAT----- i macFas5.chr11 C 0 I 5 s cerAty1.NW_012001186v1 12223046 16 + 20526591 ttatataattttaaat----- i cerAty1.NW_012001186v1 C 0 I 5 s chlSab2.chr11 119195567 16 + 128539186 TTATATAATTTTAAAT----- i chlSab2.chr11 C 0 I 21 s manLeu1.NW_012103587v1 509161 16 + 6255621 TTATATAATTTTAAAT----- i manLeu1.NW_012103587v1 C 0 I 5 s colAng1.NW_012116043v1 4571526 16 - 8658521 TTATATAATTTTAAAT----- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114776091 21 + 124281992 ttatataattttaaattaaat i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2833974 21 + 4466143 TTATATAATTTTAAATTAAAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1535862 21 + 5364348 TTATATAATTTTAAATTAAAT i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4259259 334 + 7922563 I e saiBol1.JH378194 414265 7043 - 9212255 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=91315.000000 s hg38.chr12_KI270834v1_alt 30399 17 + 119498 GTGTATAAAATTGTTAA s panTro5.chr12 127316712 17 + 137163284 GTGTATAAAATTGTTAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667550 17 + 135337776 GTGTATAAAATTGTTAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180919 17 - 8369578 GTGTATAAAATTGTTAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97828741 17 + 106955855 GTGTATAAAATTGTTTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953230 17 + 133663169 GTGTATAAATTTTTTAA i rheMac8.chr11 I 5 C 0 s macFas5.chr11 128200727 17 + 137757926 GTGTATAAATTTTTTTA i macFas5.chr11 I 5 C 0 s cerAty1.NW_012001186v1 12223067 17 + 20526591 gtgtataaattttttta i cerAty1.NW_012001186v1 I 5 C 0 s manLeu1.NW_012103587v1 509182 17 + 6255621 GTGTATAAATTTTTTTA i manLeu1.NW_012103587v1 I 5 C 0 s colAng1.NW_012116043v1 4571542 17 - 8658521 GTGTATAAATTTTTTAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114776112 17 + 124281992 GTGTATAAAATTTCTTA i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2833995 17 + 4466143 GTGTATAAAATTTCTTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1535883 17 + 5364348 GTGTATAAAACTTCTTA i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4259259 334 + 7922563 I e saiBol1.JH378194 414265 7043 - 9212255 M e chlSab2.chr11 119195583 21 + 128539186 I e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=90531.000000 s hg38.chr12_KI270834v1_alt 30416 13 + 119498 AAATAATAAAATG s panTro5.chr12 127316729 13 + 137163284 AAATAATAAAATG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667567 13 + 135337776 AAATAATAAAATG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180936 13 - 8369578 AAATAATAAAATG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97828758 13 + 106955855 AAAGTATAAAATG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953247 13 + 133663169 AAAGTATAAAATG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128200744 13 + 137757926 AAAGTATAAAATG i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12223084 13 + 20526591 aaagtataaaatg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195604 13 + 128539186 AAAGTATAAAATG i chlSab2.chr11 I 21 C 0 s manLeu1.NW_012103587v1 509199 13 + 6255621 AAAGTATAAAATG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4571559 13 - 8658521 AAAGTATAAAATG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114776129 13 + 124281992 AAAGTATGAAATG i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2834012 13 + 4466143 AAAGTATAAAATG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1535900 13 + 5364348 AAAGTATAAAATG i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e canFam3.chr26 33126641 8 - 38964690 I e otoGar3.GL873618 4259259 334 + 7922563 I e saiBol1.JH378194 414265 7043 - 9212255 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=124705.000000 s hg38.chr12_KI270834v1_alt 30429 16 + 119498 TTTATATAAAAATTAT s panTro5.chr12 127316742 16 + 137163284 TTTATATAAAAATTAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667580 16 + 135337776 TTTATATAAAAATTAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180949 16 - 8369578 TTTATATAAAAATTAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97828771 16 + 106955855 TTTATATAAAAATTAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953260 16 + 133663169 TTTATATAAAAATTAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128200757 16 + 137757926 TTTATATAAAAATTAT i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12223097 16 + 20526591 tttatataaaaattat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195617 16 + 128539186 TTTACATAAAAATTGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509212 16 + 6255621 TTTATATAAAAATTAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4571572 16 - 8658521 TTTATATAAAAATTAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114776142 16 + 124281992 TTTATGTGAAAATTGT i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2834025 16 + 4466143 TTTATGTGAAAATTGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1535913 16 + 5364348 TTTATGTGAAAATTGT i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33126649 15 - 38964690 TTTATATG-AAATTTC i canFam3.chr26 I 8 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799338 15 - 1116856 I e otoGar3.GL873618 4259259 334 + 7922563 I e saiBol1.JH378194 414265 7043 - 9212255 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=406953.000000 s hg38.chr12_KI270834v1_alt 30445 50 + 119498 ATTTTATATTTCATAAGAGTGTTAC--CACTGGGTTGGAAACACAGTCCAAA s panTro5.chr12 127316758 50 + 137163284 ATTTTATATTTCATAAGAGTGTTAC--CACTGGGTTGGAAACACAGTCCAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667596 50 + 135337776 ATTTTATATTTCATAAGAGTGTTAC--CACTGGGTTGGAAACACAGTCCAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8180965 50 - 8369578 ATTTTATATTTCATAAGAGTGTTAC--CACTGGGTTGGAAACACAGTCCAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97828787 50 + 106955855 ATTTTATATTTCATTAGAGTGTTTC--CACTGGGTTGGAAACACAGTCCAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953276 50 + 133663169 ATTTTATATTTCATAAGAGTGTTTC--CACCGGGTTGGAAACACAGTCCAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128200773 50 + 137757926 ATTTTATATTTCATAAGAGTGTTTC--CACCGGGTTGGAAACACAGTCCAAA i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12223113 50 + 20526591 attttatatttcataAGAGTGTTTC--CACCGGGTTGGAAACACAGTCCAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195633 50 + 128539186 ATTTTATATTTCATAAGAGTGTTTC--CACCGGGTTGGAAACACAGTCCAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509228 50 + 6255621 ATTTTATATTTCATAAGAGTGTTTC--CACCGGGTTGGAAACACAGTCTAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4571588 50 - 8658521 ATTTTATATTTCATAAGAGTGTTTC--CACTGGGTTGGAAACACAGTCCAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114776158 50 + 124281992 ATTTTATATTTCATGAGGGTGTTTC--TGCTGGGGTGGAAACCCAGTCCAAA i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2834041 50 + 4466143 ATTTTATATTTCATGAGGGTGTTTC--TGCTGGGTTGGAAACCCAGTCCAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1535929 50 + 5364348 ATTTTATATTTCATGAGGGTGTTTC--TGCTGGGTTGGAAACCCAGTCCAAA i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33126664 33 - 38964690 ATTTTATATTTCATTAGAGGATTTCTATACTAG------------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 799353 43 - 1116856 ATTTTATATTTTCTAAAAGGGTTTT--CAGTGCATTGGGAA-ATAG------ i dasNov3.JH568189 I 15 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e otoGar3.GL873618 4259259 334 + 7922563 I e saiBol1.JH378194 414265 7043 - 9212255 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=333966.000000 s hg38.chr12_KI270834v1_alt 30495 43 + 119498 GCACTGGGTTCCTTTGGAAAT--CTCTTGGAAACA--TGTGTTTCAT s panTro5.chr12 127316808 43 + 137163284 GCACTGGGTTCCTTTGGAAAT--CTCTTGGAAACA--TGTGTTTCAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667646 43 + 135337776 GCACTGGGTTCCTTTGGAAAT--CTCTTGGAAACA--TGTGTTTCAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8181015 43 - 8369578 GCACTGGGTTCCTTTGGAAAT--CTCTTGGAAACA--TGTGTTTCAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97828837 43 + 106955855 GCACTGGGTTCCTTTGGAAAT--CTCTTGGAAACA--TGTGTTTCAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953326 41 + 133663169 GCACTGGGTTCCTTTGGAAAT--CTCTTGGAAAC----GTGTTTCAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128200823 41 + 137757926 GCACTGGGTTCCTTTGGAAAT--CTCTTGGAAAC----GTGTTTCAT i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12223163 41 + 20526591 GCACTGGGTTCCTTTGGAAAT--CTCTTGGAAAC----GTATTTCAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195683 41 + 128539186 GCACTGGGTTCCTTTGGAAAT--CTCGTGGAAAT----GTGTTTCAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509278 41 + 6255621 GCACTGGGTTCCTTTGGAAAT--CTCTTGGAAAC----GTGTTTCAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4571638 41 - 8658521 GCACTGGGTTCCTTTGGAAAT--CTCTTGGAAAC----GTGTTTCAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114776208 43 + 124281992 GCACTGAGTTCCTTTGAAAAT--CTCCTGGAAACA--TGTGTTTCAT i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2834091 41 + 4466143 GCACTGAGTTCCTTTGAAAAT--CCCCTGGAAAC----GTGTTTCAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1535979 43 + 5364348 GCACTGAGTTCCTTCGAAAAT--CTCCTGGAAACG--TGTGTTTCAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4259593 45 + 7922563 GTACTCAGTTGCTTTGGGAAT--TCCTCAGCAACATCTGTGTTTTGT i otoGar3.GL873618 I 334 C 0 s canFam3.chr26 33126697 44 - 38964690 TCCCTGGGCT-TTTTGGAAATAATCCTTAAAGACA--TCTGTTTCGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 799396 23 - 1116856 -----------CTTTGAAAAC--ATCT-----------GTGTTTCAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e mm10.chr5 124782571 1247 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e saiBol1.JH378194 414265 7043 - 9212255 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=58614.000000 s hg38.chr12_KI270834v1_alt 30538 6 + 119498 TTCCTG s panTro5.chr12 127316851 6 + 137163284 TTCCTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667689 6 + 135337776 TTCCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8181058 6 - 8369578 TTCCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97828880 6 + 106955855 TTCCTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953367 6 + 133663169 TTCCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128200864 6 + 137757926 TTCCTG i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12223204 6 + 20526591 TTCCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195724 6 + 128539186 TTCCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509319 6 + 6255621 TTCCTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4571679 6 - 8658521 TTCCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114776251 6 + 124281992 TTCCTG i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2834132 6 + 4466143 TTGCTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1536022 6 + 5364348 TTCCTG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4259638 6 + 7922563 TTCATT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124783818 6 + 151834684 TCCCTC i mm10.chr5 I 1247 C 0 s canFam3.chr26 33126741 4 - 38964690 --TCTG i canFam3.chr26 C 0 I 3 s dasNov3.JH568189 799419 6 - 1116856 TTCATC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9434408 3417 - 31815103 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e saiBol1.JH378194 414265 7043 - 9212255 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=2542751.000000 s hg38.chr12_KI270834v1_alt 30544 182 + 119498 CAGGACGTGGTGCTGATGAGGGCCTTGCGAGACATGAACTTGCCCAAATTTGTGTTTGAAGATGTTCCTCTTTTCCTTGGTTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGCGTCCGCTACCCTGACTTCAACGATGCGGTAGAGCAGGTCCTGGAGGAGAACGGCTACGCGGT s panTro5.chr12 127316857 182 + 137163284 CAGGACGTGGTGCTGATGAGGGCCTTGCGAGACATGAACTTGCCCAAATTTGTGTTTGAAGATGTTCCTCTTTTCCTTGGTTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGTGTCCGCTACCCTGACTTCAACGATGCGGTAGAGCAGGTCCTGGAGGAGAGCGGCTACGCGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667695 182 + 135337776 CAGGACGTGGTGCTGATGAGGGCCTTGCGAGACATGAACTTGCCCAAATTTGTGTTTGAAGATGTTCCTCTTTTCCTTGGTTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGCGTCCGCTACCCTGACTTCAACGATGCGGTAGAGCAGGTCCTGGAGGAGAGCGGCTACGCGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8181064 182 - 8369578 CAGGACGTGGTGCTGATGAGGGCCTTGAGAGACATGAACTTGCCCAAATTTGTGTTTGAAGATGTTCCTCTTTTCCTTGGTTTGATTTCCGATCTGTTTCCTGGGCTGGACTGCCCTCGCGTCCGCTACCCTGACTTCAGTGATGCGGTAGAGCAGGTCCTGGAGGAGAACGGCTACGCGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97828886 182 + 106955855 CAGGACGTGGTGCTGATGAGGGCGCTGCGAGACATGAACTTGCCCAAATTTGTGTTTGAAGATGTTCCTCTTTTCCTTGGTTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGCGTCCGCTACCCTGACTTCAGCGATGCGGTAGAGCAGGTCCTGGAGGAGAACGGCTACGCGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953373 182 + 133663169 CAGGACGTGGTGCTGATGAGGGCCCTGCGAGACATGAACCTGCCCAAGTTTGTGTTTGAAGATGTTCCTCTTTTCCTTGGTTTGATTTCGGATCTGTTTCCTGGGCTGGATTGCCCTCGCGTCCGCTACCCTGACTTCAATGATGCGGTAGAGCAGGTTCTGGAGGAGAACGGCTACGCGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128200870 182 + 137757926 CAGGACGTGGTGCTGATGAGGGCCCTGCGAGACATGAACCTGCCCAAGTTTGTGTTTGAAGATGTTCCTCTTTTCCTTGGTTTGATTTCGGATCTGTTTCCTGGGCTGGATTGCCCTCGCGTCCGCTACCCTGACTTCAATGATGCGGTAGAGCAGGTCCTGGAGGAGAACGGCTACGCGGT i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12223210 182 + 20526591 CAGGACGTGGTGCTGATGAGGGCCCTGCGAGACATGAACCTGCCCAAGTTTGTGTTTGAAGATGTTCCTCTTTTCCTTGGTTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGCGTCCGCTACCCTGACTTCAATGATGCGGTAGAGCAGGTCCTGGAGGAGAATGGCTACACGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195730 182 + 128539186 CAGGACGTGGTGCTGATGAGGGCCCTGCGAGACATGAACCTGCCCAAGTTTGTGTTTGAAGATGTTCCTCTTTTCCTCGGTTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGCGTCCGCTACCCTGACTTCAATGATGCGGTAGAGCAGGTCCTGGAGGAGAACGGCTACGCGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509325 182 + 6255621 CAGGACGTGGTGCTGATGAGGGCCCTGCGAGACATGAACCTGCCCAAGTTTGTGTTTGAAGATGTTCCTCTTTTCCTCGGTTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGTGTCCGCTACCCTGACTTCAATGATGCGGTAGAGCAGGTCCTGGAGGAGAACGGCTACACGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4571685 182 - 8658521 CAGGACGTGGTGCTGATGAGGGCCCTGCGAGACATGAACTTGCCCAAGTTTGTGTTTGAGGATGTTCCTCTTTTCCTCAGTTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGCGTCCGCTACCCTGACTTCAATGATGCGGTGGAGCAGGTCCTGGAGGAGAACGGCTACGCGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114776257 182 + 124281992 CAGGACGTGGTACTGATGAGGGCCCTGCGCGACATGAACCTGCCCAAGTTTGTGTTTGAAGATGTCCCTCTTTTCCTCGGCTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGTGTCCGCTACCCTGATTTCAACGATGCGGTAGAGCAGGTCCTGGAGGAGAACGGCTACGCAGT i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2834138 182 + 4466143 CAGGACGTGGTACTGATGAGGGCCCTGCGTGACATGAACCTGCCCAAGTTTGTGTTTGAAGATGTCCCTCTTTTCCTCGGCTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGCGTCCGCTACCCTGACTTCAACGATGCGGTAGAGCAGGTCCTGGAGGAGAACGGCTACGTGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1536028 182 + 5364348 CAGGACGTGGTACTGATGAGGGCTCTGCGCGACATGAACCTGCCCAAGTTTGTGTTTGAAGATGTCCCTCTTTTCCTCGGCTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGCGTCCGCTACCCTGACTTGAACGATGCCGTGGAGCAGGTCCTGGAGGAGAACGGCTACGTGGT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9437825 182 - 31815103 CAGGACGTGGTGCTGATGAGGGCCCTCCGGGACATGAACCTGCCCAAGTTCGTGTTTGAGGACGTGCCTCTCTTCCTCGGCCTGATTTCCGACCTGTTCCCGGGGCTCGACTGCCCGCGGGTCCGCTACCCCGACTTCAACGACGCCGTGGAGCACGTGCTGGAGGAGAACGGCTACGTGGT i micMur3.chr21 I 3417 I 185 s otoGar3.GL873618 4259644 182 + 7922563 CAGGATGTGGTGCTGATGCGGGCCCTTCGAGACATGAATCTGCCCAAGTTTGTGTTTGAAGACGTCCCTCTTTTCCTCGGTTTGATTTCCGATCTGTTTCCAGGACTAGACTGCCCTCGAGTCCGCTACCCGGACTTCAATGATGCTGTAGAGCATGTCCTTGAGGAGAACGACTACGTGGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124783824 182 + 151834684 CAGGATGTCGTCCTGATGCGGGCGCTGCGGGACATGAACCTGCCCAAGTTTGTGTTTGAGGACGTCCCCCTCTTCCTGGGCCTCATCTCTGACCTGTTTCCCGGGCTGGACTGCCCCCGTGTGCGCTACCCGGATTTCAACGACGCAGTGGAGCAGGTGTTGGAGGAAAATGGTTATGTGCT i mm10.chr5 C 0 C 0 s canFam3.chr26 33126748 182 - 38964690 CAGGATGTGGTGCTGATGAGGGCCCTTCGAGACATGAATCTGCCCAAGTTCGTATTTGAGGATGTCCCTCTTTTCCTTGGTTTGATTTCTGATCTGTTTCCTGGACTAGACTGCTCGCGTGTTCGCTACCCCAATTTTAATGATGCCGTGGAACAGGTGCTGGAGGAGAATGGCTACATTGT i canFam3.chr26 I 3 C 0 s dasNov3.JH568189 799425 182 - 1116856 TAGGATGTGGTACTGATGCGGGCACTACGGGACATGAATCTGCCCAAGTTTGTGTTTGAAGATGTCCCTCTTTTCCTCGGTCTGATTTCTGATCTGTTTCCTGGACTAGACTGCCCCCGTGTCCGCTACCCCGATTTCAATGATGCAGTAGAACAAGTGCTGGAAGAGAATGGCTATGTTGT i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e saiBol1.JH378194 414265 7043 - 9212255 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=188966.000000 s hg38.chr12_KI270834v1_alt 30726 17 + 119498 CCTACCCATCCAGGTAA----- s panTro5.chr12 127317039 17 + 137163284 CCTACCCATCCAGGTAA----- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667877 17 + 135337776 CCTACCCATCCAGGTAA----- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8181246 17 - 8369578 CCTACCCATCCAGGTAA----- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829068 17 + 106955855 CCTACCCGTCCAGGTAA----- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953555 17 + 133663169 CCTACCCGTCCAGGTAA----- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201052 17 + 137757926 CCTACCCGTCCAGGTAA----- i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12223392 17 + 20526591 CCTACCCGTCCAGGTAA----- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195912 17 + 128539186 CCTACCCATCCAGGTAA----- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509507 17 + 6255621 CCTACCCATCCAGGTAA----- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4571867 17 - 8658521 CCTACCCGTCCAGGTAA----- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114776439 17 + 124281992 CCTCCCCGTCCAGGTAA----- i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2834320 17 + 4466143 CCTCCCCGTCCAGGTAA----- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1536210 17 + 5364348 CCTCCCCGTTCAGGTAA----- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4259826 17 + 7922563 CCTGCCGGTGCAGGTGA----- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124784006 17 + 151834684 CCTGCCAGTCCAGGTGA----- i mm10.chr5 C 0 I 1083 s canFam3.chr26 33126930 17 - 38964690 CTTACCTGTCCAGGTAA----- i canFam3.chr26 C 0 I 10 s dasNov3.JH568189 799607 22 - 1116856 CTTACCTGTTCAGGTACAACTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e saiBol1.JH378194 414265 7043 - 9212255 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=281881.000000 s hg38.chr12_KI270834v1_alt 30743 48 + 119498 AG---CCAGGAAAATGACCTCACTGTGGCCG----TGCATCCTTTCCATTGGCTT s panTro5.chr12 127317056 48 + 137163284 AG---CCAGGAAAATGACCTCACTGTGGCCG----TGCATCCTTCCCATTGGCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667894 48 + 135337776 AG---CCAGGAAAATGACCTCACTGTGGCCG----TGCATCCTTCCCATTGGCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8181263 48 - 8369578 AG---CCAGGAAAATGACCTCACTGTGGCCG----TGCATCCTTTCCATTGGCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829085 48 + 106955855 AG---CCAGGAAAATGACCTCACTGTAGCTG----TGCATCCTTTCCATTGGCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953572 47 + 133663169 AG----CGGGAAAATGAGCTCCCTGTGGCTG----TGCATCCTTTCCATTGGCTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201069 47 + 137757926 AG----CGGGAAAATGAGCTCCCTGTGGCTG----TGCATCCTTTCCATTGGCTT i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12223409 48 + 20526591 AG---CCGGGAAAATGAGCTCACTGTGGCTG----TGCATCCATTCCATTGGCTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195929 48 + 128539186 AG---CCAGGAAAATGAGCTCACTGTGGCTG----TGCATCCTTTCCATTGGCTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509524 48 + 6255621 AG---CCGGGAAAATGAGCTCACTGTGGCTG----TGCATCCTTTCCATTGGCTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4571884 48 - 8658521 AG---CCGGGAAAATGAGCTCACTGTGGCTG----TGCATCCTTTCCATTGGCTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114776456 44 + 124281992 AG---CCAGG-AAATGACATCACTG--GCCG----TGCGTCCTTCCCATTGG-TT i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2834337 44 + 4466143 AG---CCAGG-AAATGACATCACTG--GCCA----TGTGTCCTTCCCATTGG-TT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1536227 43 + 5364348 AG---CCAGG-AAATGACGTCACCG--GCCG----TGCGTCCTTCAC-CTGG-GT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4259843 51 + 7922563 ACGGCCTAAAAGCAAGCATTCACTGTGACTT----CTGGTCCTTTCCATTAGTTT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33126957 37 - 38964690 AA---ATGTGAAAATGAGTTCATAG---------------GCTTCTTCTGGGTTT i canFam3.chr26 I 10 C 0 s dasNov3.JH568189 799629 52 - 1116856 AG---CTGGAAATGAGAGCTCGCTTTGACTTTCTCTGATTCCTTTCAGTCAATCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e saiBol1.JH378194 414265 7043 - 9212255 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=193296.000000 s hg38.chr12_KI270834v1_alt 30791 25 + 119498 TTTGTTT------------TTGCAGTTCTTTAAAAAT s panTro5.chr12 127317104 25 + 137163284 TTTGTTT------------TTGCAGTTCTTTAAAAAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667942 25 + 135337776 TTTGTTT------------TTGCAGTTCTTTAAAAAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8181311 25 - 8369578 TTTGTTT------------TTGCAGTTCTTTAAAAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829133 25 + 106955855 TTTGTTT------------TTGCAGTTCTTTAAAAAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953619 25 + 133663169 TTTGTTT------------TTGCAGTTCTTTAAAAAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201116 25 + 137757926 TTTGTTT------------TTGCAGTTCTTTAAAAAT i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12223457 25 + 20526591 TTTGTTT------------TTGCAGTTCTTTAAAAAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119195977 25 + 128539186 TTTGTTT------------TTGCAGTTCTTTAAAAAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509572 25 + 6255621 TTTGTTT------------TTGCAGTTCTTTAAAAAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4571932 25 - 8658521 TTTGTTT------------TTTCAGTTCTTTAAAAAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114776500 25 + 124281992 TTTGTTT------------TTATAGTTCTTTAAAAAT i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2834381 25 + 4466143 TTTGCTT------------TTATAGTTCTTTAAAAAT i cebCap1.NW_016107484v1 C 0 I 1298 s aotNan1.NW_018491581v1 1536270 22 + 5364348 TTTGTTT------------TTATA---CTTCAGAAAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4259894 37 + 7922563 TTTGTTTTAAAGAACTGCAttgtagttatggtaaaat i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33126994 22 - 38964690 TTGGTCT------------TTCCA--TCTGAAAAAA- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799681 0 - 1116856 C e saiBol1.JH378194 414265 7043 - 9212255 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=684107.000000 s hg38.chr12_KI270834v1_alt 30816 96 + 119498 ATATGTACAGTAAAATACGCATAAGTTTCACCATCTTAACCATTTTTCCCCA--tttttaaatcacagtaaaatacacataac--aatatttaccatctt--- s panTro5.chr12 127317129 96 + 137163284 ACATGTACAGTAAAATACGCATAAGTTTCACCATCTTAACCATTTTTCCCCA--tttttaaatcacagtaaaatacacataac--aatatttaccatctt--- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125667967 96 + 135337776 ATATGTACAGTAAAATACGCATAAGTTTCACCATCTTAACCATTTTTCCCCA--tttttaaatcacagtaaaatacacataac--aatatttaccatctt--- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8181336 96 - 8369578 GTATGTACAGTAAAATATGCATAAGTTTCACCATCTTAACCATTTTTCCCCA--tttttaaatcacagtaaaatacacataac--aatatttaccatctt--- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829158 96 + 106955855 ATATGTATAGTAAAATACGCATAAGTTTCACCATCTTAACCATTTTTCCCCA--tttttaaatcacagtaaaatacacataac--aatatttaccatctt--- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953644 96 + 133663169 ATATGTATAGTAAAATACACAAAAGTTTCACCATCTTAACCATTTTTCCCCA--tttttaaatcgtggtaaaatacacataac--aatatttaccctgtt--- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201141 96 + 137757926 ATATGTGTAGTAAAATACACAAAAGTTTCACCATCTTAACCATTTTTCCCCA--tttttaaatcgtggtaaaatacacataac--aatatttaccctgtt--- i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12223482 96 + 20526591 ATATGTACAGTAAAATACACAAAAGTTTCACCATCTTAACCATTTTTCCCCA--tttttaaatcgtggtaaaatacacataac--aatatttaccctgtt--- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119196002 96 + 128539186 ATATGTATAGTAAAATACATAAAAGTTTCACCATCTTAACCATTTTCCCCCA--tttttaaatcacggtaaaatacacataac--aatatttaccctgtt--- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509597 96 + 6255621 ATATGTATAGTAAAATACACAAAAGTTTCACCATCTTAACCATTTTTCCCCA--tttttaaatcgtggtaaaatacacataac--aatatttaccctgtt--- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4571957 96 - 8658521 ATATTTATAGTAAAATACACAAAAGTTTCACCATCTTAACCATTTTTCCCCA--tttttaaatcgtggtaaaatacacataac--aatatttaccctctt--- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114776525 95 + 124281992 ATATGTATAG-AAAATACATGTGAGTTTCACCATCTTAACCATTTCTCCTCA--TTTTTAAATTGCAGTAAAATACATATACC--AATATTTATCATCTT--- i calJac3.chr9 C 0 C 0 s aotNan1.NW_018491581v1 1536292 95 + 5364348 AAATGTGTAG-AGAATACAGGTAAGTTTCACCATCTTAACCATTTTCCCCCA--TTTTTAAATTGCAGTAAAACACATATAGC--AATATTTATCATCTT--- i aotNan1.NW_018491581v1 C 0 I 1145 s otoGar3.GL873618 4259931 85 + 7922563 atacatg-----------acatcagttttaccatcttaaccacttCCTCCtt--ttttt--attgtggtaaaatacacataacctaaaatttaccatctg--- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33127016 100 - 38964690 CtaaatgtggaaaaatacacataacatttaccatcttaaccatttttCCCTGAttttttttattgtggtaaggtacacataac--aa-attttccctcatctt i canFam3.chr26 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799681 0 - 1116856 C e cebCap1.NW_016107484v1 2834406 1298 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=67931.000000 s hg38.chr12_KI270834v1_alt 30912 10 + 119498 acctactttt s panTro5.chr12 127317225 10 + 137163284 acctactttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125668063 10 + 135337776 acctactttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8181432 10 - 8369578 acctactttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829254 10 + 106955855 acctactttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953740 10 + 133663169 acctactttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201237 10 + 137757926 acctactttt i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12223578 10 + 20526591 acctactttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119196098 10 + 128539186 acctactttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509693 10 + 6255621 acctactttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4572053 10 - 8658521 acctactttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114776620 10 + 124281992 CCTTTCTTTT i calJac3.chr9 C 0 I 1206 s otoGar3.GL873618 4260016 10 + 7922563 aactactttt i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33127116 10 - 38964690 actcatgttt i canFam3.chr26 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799681 0 - 1116856 C e aotNan1.NW_018491581v1 1536387 1145 + 5364348 I e cebCap1.NW_016107484v1 2834406 1298 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=84623.000000 s hg38.chr12_KI270834v1_alt 30922 14 + 119498 aaatgtagagtttg s panTro5.chr12 127317235 14 + 137163284 aaatgtagagtttg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125668073 14 + 135337776 aaatgtagagtttg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8181442 14 - 8369578 aaatgtagagtttg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829264 14 + 106955855 aaatgtagagtttg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953750 14 + 133663169 aaatgtagagtttg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201247 14 + 137757926 aaatgtagagtttg i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12223588 14 + 20526591 aattgtagagtttg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119196108 14 + 128539186 aaatgtagagtttg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509703 14 + 6255621 aaatgtagagtttg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4572063 14 - 8658521 aaatgtagagtttg i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4260026 14 + 7922563 aagtgtggggtttg i otoGar3.GL873618 C 0 I 76 s canFam3.chr26 33127126 11 - 38964690 ---agtatagttta i canFam3.chr26 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799681 0 - 1116856 C e aotNan1.NW_018491581v1 1536387 1145 + 5364348 I e cebCap1.NW_016107484v1 2834406 1298 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114776630 1206 + 124281992 I e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=18018.000000 s hg38.chr12_KI270834v1_alt 30936 3 + 119498 tta s panTro5.chr12 127317249 3 + 137163284 tta i panTro5.chr12 C 0 C 0 s panPan2.chr12 125668087 3 + 135337776 tta i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8181456 3 - 8369578 tta i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829278 3 + 106955855 tta i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123953764 3 + 133663169 tta i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201261 3 + 137757926 tta i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12223602 3 + 20526591 tta i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119196122 3 + 128539186 tta i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509717 3 + 6255621 tta i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4572077 3 - 8658521 tta i colAng1.NW_012116043v1 C 0 C 0 s canFam3.chr26 33127137 3 - 38964690 tta i canFam3.chr26 C 0 I 83 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799681 0 - 1116856 C e otoGar3.GL873618 4260040 76 + 7922563 I e aotNan1.NW_018491581v1 1536387 1145 + 5364348 I e cebCap1.NW_016107484v1 2834406 1298 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114776630 1206 + 124281992 I e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=1154698.000000 s hg38.chr12_KI270834v1_alt 30939 286 + 119498 ggccgggcacagtggcttacgcctgtaatcccagcacttcgggaggctgaggcgggtggatcacgaggtcaagagattgagatcatcctggccaacgtggagaaaccccatctctactaaaaatacaaaaattagccgggcgtggtggcgctcgcct---gtagtctcagcttcttgggaggctgagg-cgagagaattgctggaacgcgcgaggtggaggttgcagtgagccaagatcgtgccactgcactccagcctggtgagagagcgagactccgtctcaaaaaat s panTro5.chr12 127317252 286 + 137163284 ggccgggcacagtggcttacgcctgtaatcccagcacttcgggaggctgaggcgggtggatcacgaggtcaagagattgagatcatcctggccaacgtggagaaaccccatctctactaaaaatacaaaaattagccgggcgtggtggcgctcgcct---gtagtctcagcttcttgggaggctgagg-caagagaattgctggaacacgcgaggtggaggttgcagtgagccaagatcgtgccactgcactccagcctggtgacagagcgagactccgtctcaaaaaat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125668090 286 + 135337776 ggccgggcacagtggcttaagcctgtaatcccagcacttcgggaggctgaggcgggtggatcacgaggtcaagagattgagatcatcctggccaacgtggagaaaccccatctctactaaaaatacaaaaattagccgggcgtggtggcgctcgcct---gtagtctcagcttcttgggaggctgagg-caagagaattgctggaacacgcgaggtggaggttgcagtgagccaagattgtgccactgcactccagcctggtgacagagcgagactccgtctcaaaaaat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8181459 286 - 8369578 ggccgggcacagtggcttacacctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaagagattgagatcatcctggccaacgtggagaaaccccatctctactaaaaatacaaaaattagccgggcgtggtggcgcttgcct---gtagtctcagcttcttgggaggctgagg-caagagaattgctggaacacgggaggtggaggttgcagtgagccaagatcgtgccactgcactccagcctggtgacagagcgagactccgtctcaaaaaat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829281 286 + 106955855 ggcccggcacagtggctcacgcccgtaatcccagcacttcgggaggctgaggcgggcggatcatgaggtcaagagatcgagatcatcctggccaacgtggagaaaccccatctctactaaaaatacaaaaattagctgggcgtggtggcgcttgcct---gtagtctcagcttcttgggaggctgagg-caagagaattactggaacacgggaggtggaggttgcagtgagccaagatcgtgccactgtactccagcctggtgacagagcaagactccgtctcaaaaaat i nomLeu3.chr10 C 0 I 1 s rheMac8.chr11 123953767 245 + 133663169 ggcccggcgcagtggctcgcgcctgtaatcccagcacttcgggaggttga-----------------------------------------ccaacatggagaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggcgctcgcct---gtagtctcagcttcttgggaggctgagg-caagagaattgcttgaacacgggaggtggagcttgcaatgagccaagatcatgccactgcactcccgcctggtgacagagcgagactctgtctcaaaaaat i rheMac8.chr11 C 0 I 2 s macFas5.chr11 128201264 245 + 137757926 ggcccggcgcagtggctcgcgcctgtaatcccagcacttcgggaggttga-----------------------------------------ccaacatggagaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggcgctcgcct---gtagtctcagcttcttgggaggctgagg-caagagaattgcttgaacacgggaggtggagcttgcaatgagccaagatcatgccactgcactcccgcctggtgacagagcgagactctgtctcaaaaaat i macFas5.chr11 C 0 I 2 s cerAty1.NW_012001186v1 12223605 248 + 20526591 ggcccggcgcagtggctcgcgcctgtaatcccagcacttcgggaggctga-----------------------------------------ccaacatggagaaaccccatctctactaaaaatacaaaaattaggtgggtgtggtggcgctcgcctatagtagtctcagcttcttgggaggctgagg-caagagaattgcttgaacacgggaggtggagcttgcaatgagccaagatcatgccgctgcactcccgcctggtgacagagcgagactctgtctcaaaaaat i cerAty1.NW_012001186v1 C 0 I 4 s chlSab2.chr11 119196125 243 + 128539186 ggcccggcgcagtggctcacgcctgtaatcccagcacttcgggacgctga-----------------------------------------ccaacatggagaaaccccatctctactaaaaatacaaaaattagccgggtgtggtggcgctcgcct---gtagtctcagcttcttgggaggctgagg-caagagaattgcttgaacacgggaggtggagcttgcaatgagccaagatcatgccactgcactccagcctggtgacagagcgaga--ctgtctcaaaaaat i chlSab2.chr11 C 0 I 5 s manLeu1.NW_012103587v1 509720 245 + 6255621 ggcccggcgcagtggctcgcgcctgtaatcccagcacttcgggaggctga-----------------------------------------ccaacatggagaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggcgctcgcct---gtagtctcagcttcttgggaggctgagg-caagagaattgcttgaacacgggaggtggagcttgcaatgagccaagatcatgccgctgcactcccgcctggtgacagagtgagactctgtctcaaaaaat i manLeu1.NW_012103587v1 C 0 I 2 s colAng1.NW_012116043v1 4572080 243 - 8658521 ggcccggtgcagtggctcacgcctgtaatcccagcacttcgggaggctga-----------------------------------------ccaacatggagaaaccctatctctactaaaaatacaaaaattagctgggtgtggtggcgctcgcct---gtggtctcagcttcttgggaggctgagaccaagagaattgcttgaacg-gggaggtggagcttgccgtgagccaagatcgtgccactgcactccagcctggtgacagagcgaga--ctgtctcaaaaaat i colAng1.NW_012116043v1 C 0 I 1 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799681 0 - 1116856 C e canFam3.chr26 33127140 83 - 38964690 I e otoGar3.GL873618 4260040 76 + 7922563 I e aotNan1.NW_018491581v1 1536387 1145 + 5364348 I e cebCap1.NW_016107484v1 2834406 1298 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114776630 1206 + 124281992 I e macNem1.NW_012010578v1 10599868 1715 - 16319837 I a score=81697.000000 s hg38.chr12_KI270834v1_alt 31225 15 + 119498 aaaagaaaaaagaaa s panTro5.chr12 127317538 15 + 137163284 aaaagaaaaaagaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125668376 15 + 135337776 aaaagaaaaaagaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8181745 15 - 8369578 aaaagaaaaaagaaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829568 15 + 106955855 aaaaaaaaaaagaaa i nomLeu3.chr10 I 1 C 0 s rheMac8.chr11 123954014 15 + 133663169 aaaaaaaaaaagaaa i rheMac8.chr11 I 2 C 0 s macFas5.chr11 128201511 15 + 137757926 aaaaaaaaaaagaaa i macFas5.chr11 I 2 C 0 s macNem1.NW_012010578v1 10601583 15 - 16319837 aaaaaaaaaaagaaa i macNem1.NW_012010578v1 I 1715 C 0 s cerAty1.NW_012001186v1 12223857 15 + 20526591 aaaaaaaaaaagaaa i cerAty1.NW_012001186v1 I 4 C 0 s chlSab2.chr11 119196373 15 + 128539186 aaagaaaaaaagaaa i chlSab2.chr11 I 5 C 0 s manLeu1.NW_012103587v1 509967 15 + 6255621 aaaaaaaaaaagaaa i manLeu1.NW_012103587v1 I 2 C 0 s colAng1.NW_012116043v1 4572324 15 - 8658521 aaaaaaaataaaaaa i colAng1.NW_012116043v1 I 1 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799681 0 - 1116856 C e canFam3.chr26 33127140 83 - 38964690 I e otoGar3.GL873618 4260040 76 + 7922563 I e aotNan1.NW_018491581v1 1536387 1145 + 5364348 I e cebCap1.NW_016107484v1 2834406 1298 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M e calJac3.chr9 114776630 1206 + 124281992 I a score=382454.000000 s hg38.chr12_KI270834v1_alt 31240 44 + 119498 aaatgtagagtttgttggtgctaagtacattcacattactgtgc s panTro5.chr12 127317553 44 + 137163284 aaatgtagagtttgttggtgctaagtacattcacattactgtgc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125668391 44 + 135337776 aaatgtagagtttgttggtgctaagtacattcacattactgtgc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8181760 44 - 8369578 aaatgtagagtttgttggtgctaagtacattcacattactgtgc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829583 44 + 106955855 aaatgtagagtttgttggtgctaagtacattcacattactgtcc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123954029 44 + 133663169 aaatgtagagtttggtagcactaagtacattcacattgctgtgc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201526 44 + 137757926 aaatgtagagtttggtagcactaagtacattcacattgctgtgc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10601598 44 - 16319837 aaatgtagagtttggtagcactaagtacattcacattgctgtgc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12223872 44 + 20526591 aaatgtagagtttggtagcactaagtacattcacattgctgtgc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119196388 44 + 128539186 aaatgtagagtttggtagcactaagtacattcacattgctgtgc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 509982 44 + 6255621 aaatgtagagtttggtagcactaagtatattcacattgctgtgc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4572339 44 - 8658521 aaatgtagagtttggtagcactaagtacattcacattactgtgc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114777836 44 + 124281992 aaatgtagagtttgttggtattaagtacattcacattactgtgc i calJac3.chr9 I 1206 C 0 s cebCap1.NW_016107484v1 2835704 44 + 4466143 aaatgtagagtttgttggcattaagtacgttcacgttactgtgc i cebCap1.NW_016107484v1 I 1298 C 0 s aotNan1.NW_018491581v1 1537532 44 + 5364348 aaatgtagagtttgttggcattaagtacattcacgttactgtgc i aotNan1.NW_018491581v1 I 1145 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799681 0 - 1116856 C e canFam3.chr26 33127140 83 - 38964690 I e otoGar3.GL873618 4260040 76 + 7922563 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=329361.000000 s hg38.chr12_KI270834v1_alt 31284 40 + 119498 aaccatcagcattatccatctctggaacgttttcatattg s panTro5.chr12 127317597 40 + 137163284 aaccatcagcattagccatctctggaacgttttcatattg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125668435 40 + 135337776 aaccatcagcattagccatctctggaacgttttcatattg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8181804 40 - 8369578 aaccatcagcattatccatctctggaacaatttcatattg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829627 40 + 106955855 aaccatcagcaatatccatctccagaacgttttcatgttg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123954073 40 + 133663169 aaccatcaccattatccatctccagaacgttttcatattg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201570 40 + 137757926 aaccatcaccattatccatctccagaacgttttcatattg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10601642 40 - 16319837 aaccatcaccattatccatctccagaacgttttcatattg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12223916 40 + 20526591 aaccatcaccattatccatctccagaacgttttcatattg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119196432 39 + 128539186 aaccatcaccattaaccatctccagaacg-tttcgtattg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 510026 40 + 6255621 aaccatcaccattatccatctccagaacattttcatattg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4572383 40 - 8658521 aaccatcaccattatccatctccagaacgttttcatattg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114777880 40 + 124281992 aaccatatccattatccatctctagaacgtttttgtattg i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2835748 40 + 4466143 aaccatcaccgttatccatccccagaatgttttcatattg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1537576 40 + 5364348 aaccatcaccattatccatctccagaacgtttttgtattg i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33127223 22 - 38964690 aaccaacacccccacccgtctc------------------ i canFam3.chr26 I 83 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799681 0 - 1116856 C e otoGar3.GL873618 4260040 76 + 7922563 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=1758674.000000 s hg38.chr12_KI270834v1_alt 31324 198 + 119498 caaaactaaaaccctacacccgtt-aacagcttaccttctcccctccctcc--------------------gctg--gcaacctctgctcgacttcctgtctctacaaatttgactactctaggtacctcctgtaagtagaatcatgtaatttttgtccttttgtgtctggcttatttcactaac---agtgttttcaacatttatccatgttgtggcatgtgt s panTro5.chr12 127317637 191 + 137163284 cgaaactaaaaccctacacccgtt-aacagctta-------ccctccctcc--------------------gctg--gcaacctctgctcgacttcctgtctctacaaatttgactactctaggtacctcctgtaagtagaatcatgtaatttttgtccttttgtgtctggcttatttcactaac---agtgttttcaacatttatccatgttgtggcatgtgt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125668475 191 + 135337776 cgaaactaaaaccctacacccgtt-aacagctta-------ccctccctcc--------------------gctg--gcaacctctgctcgacttcctgtctctacaaatttgactactctaggtacctcctgtaagtagaatcatgtaatttttgtccttttgtgtctggcttatttcactaac---agtgttttcaacatttatccatgttgtggcatgtgt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8181844 197 - 8369578 caaaactaaaaccctacacccgtt-aacagcttaccttct-ccctccctcc--------------------gctg--gcaacctctgctcgacttcctgtctctacaaatttgactactctaggtacctcctgtaagtagaatcatgtaatttttgtccttttgtgtctggcttatttcactaac---agtgttttcaacatttatccatgttgtggcatgtgt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829667 201 + 106955855 caaaactaaaaccctacacccgtt-aacagcttaccttctcccctccctcca-------------------gccgctgcaacctctgctcgacttcctgtctctacaaatttgactactctaggtacctcctataagtggaatcatataatttttgtccttttgtgtctggcttatttcactaac---agtgttttcaacatttatccatgttgtggcatgcgt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123954113 202 + 133663169 caaaactaaaaccctgtacccgtt-aactacttaccttctcccctcgctccagcc----------------gctg--gcaacctctgcttgacttcctgtctctacagatttgactactctaggtacctcctataggtggaatcatataatttttgtccatttgtgtctggcttatttcactaac---agtgttttcaacatttatccatgttgtggcatgtgt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201610 202 + 137757926 caaaactaaaaccctgtacccgtt-aactacttaccttctcccctcgctccagcc----------------gctg--gcaacctctgctcgacttcctgtctctacagatttgactactctaggtacctcctataggtggaatcatataatttttgtccatttgtgtctggcttatttcactaac---agtgttttcaacatttatccatgttgtggcatgtgt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10601682 202 - 16319837 caaaactaaaaccctgtacccgtt-aactacttaccttctcccctcgctccagcc----------------gctg--gcaacctctgctcgacttcctgtctctacagatttgactactctaggtacctcctataggtggaatcatataatttttgtccttttgtgtctggcttatttcactaac---agtgttttcaacatttatccatgttgtggcatgtgt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12223956 202 + 20526591 caaaactgaaaccctgtacccgtt-aactacttaccttctcccctcgctccagcc----------------gctg--gcgacctctgctcgacttcctgtctctacacatttgactactctaggtacctcttgtaggtggaatcatataatttttgtccttttgtgtctggcttatttcactaac---agtgttttcaacatttatccatgttgtggcatgtgt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119196471 202 + 128539186 caaaactaaaaccctgtacccgtt-aactacttaccctctcccctccctccagcc----------------gctg--gcagcctctgctcgacttcctgtctctacacatttgaccactctaggtacctcctataggtggaatcatataatttttgtccttttgtgcctggcttatttcactaac---agtgttttcaacatttatccatgttgtggcatgtgt i chlSab2.chr11 C 0 I 322 s manLeu1.NW_012103587v1 510066 202 + 6255621 caaaactaaaaccctgtacctgtt-aactacttaccttctcccctcgctccagcc----------------gctg--gcaacctctgctcgacttcctgtctctacacatttgactactctaggtacctcttgtaggtggaatcatataatttttgtccttttgtgtctggcttatttcactaac---agtgttttcaacatttatccatgttgtggcatgtgt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4572423 193 - 8658521 caaaactaaaaccctgtccccgtt-aactacttaccttctcccctccctccagcc----------------gctg--gcaacct-tgctcgacttcctgtctctacacatttgaccactctaggtacctcctataggtgga-------aatttttgtccttttgtgtctcgctta-ttcactaac---agtgttctcaacatttatccatgttgtggcgtgtgt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114777920 200 + 124281992 cacaactaaacccctatgcccatt-aacagcttacattcc-ctctccctcc-acc----------------cccg--gcaacctctgttcaactttctctcta--tgaattggactactctaggtacctcctgtaagtggaagcatatactttttgtccttttgtgtctggtttatttcactaac-atagtgctttcaatgtttatgcatgttgtggcatgtgt i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2835788 200 + 4466143 caaaactaaagccctatgcccatt-aacagcttatattcc-cactccctcc-acc----------------cccg--gcaacctctgctcaacttcctgtctc--tgaattggactactctaggtacctcctctaagtggaagcatataatttttgtccttttgtgtctggcgtatttcactaac-atagtgctttcaatgtttatgcatgttgtggcatgtgt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1537616 202 + 5364348 caaaactaaaaccctatgcccatt-aacagcttacattct-gcctccctcc-acc----------------ctcg--gcaacctctgctcaactttctgtctctgtgaattggactactctaggtacctcctataagtggaagcatataatttttgtccttttgtatctggcttatttcactaac-atagtgttttcaatgtttatgcatgttgtggcatgtgt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4260116 200 + 7922563 ------caaaacttcatactcatcaaacaattgactttctttcccctccccagcc----------------ccag--acacccaccatcctactttctgtctctgtgaatctgacaactctagggactttgtgttaggggaatcatccaggatttgtctttttgtgacgggcttatctcacttagcataacgtcctcaaatttcatccatgtggtagcctgtgt i otoGar3.GL873618 I 76 C 0 s canFam3.chr26 33127245 199 - 38964690 -----------------acccctc-ccccacttcctccctcccccctccccatcctgaggcctgatgcccacctg--gtacctacccttctgctttctgt-tctataaatctggctcctctggggacattatgtaagtggaatcttgcggtgtttgtccttttgtgactggcttttttcatttag---tgtg-tttcatagtttatccatgtcatagcaggtgt i canFam3.chr26 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799681 0 - 1116856 C e saiBol1.JH378194 414265 7043 - 9212255 M a score=405013.000000 s hg38.chr12_KI270834v1_alt 31522 40 + 119498 cagaatt-t-cttcctttttaaggctaaat----------TTT-----------ATATATATA s panTro5.chr12 127317828 40 + 137163284 cagaatt-t-cttcctttttaaggctaaat----------TTT-----------ATATATATA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125668666 40 + 135337776 cagaatt-t-cttcctttttaaggctaaat----------TTT-----------ATATATATA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8182041 40 - 8369578 cagaatt-t-cttcctttttaaggctgaat----------TTT-----------ATATATATA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829868 40 + 106955855 cagaatt-t-cttccttgttaaggctaaat----------TTt-----------atatatata i nomLeu3.chr10 C 0 I 37 s rheMac8.chr11 123954315 40 + 133663169 cagaatt-t-cttcctttttaaggctaaat----------ttt-----------atgtatgta i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201812 40 + 137757926 cagaatt-t-cttcctttttaaggctaaat----------TTT-----------ATATATGTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10601884 40 - 16319837 cagaatt-t-cttcctttttaaggctaaat----------TTT-----------ATATATGTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12224158 40 + 20526591 cagaatt-t-cttcctttttaaggctaaat----------TTT-----------ATATATGTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119196995 40 + 128539186 cagaatt-t-cttcctttttaaggctaaat----------TTT-----------ATATATGTA i chlSab2.chr11 I 322 C 0 s manLeu1.NW_012103587v1 510268 40 + 6255621 cagaatt-t-cttcctttttaaggctaaat----------TTT-----------ATATATGTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4572616 40 - 8658521 cagaatt-t-cttcctttttaaggctaaat----------TTT-----------ATATATGTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114778120 40 + 124281992 cagaatt-t-ctttctttttaaggctagat----------tgt-----------gtgtgtgtg i calJac3.chr9 C 0 I 36 s cebCap1.NW_016107484v1 2835988 40 + 4466143 cagaatt-t-cttcctttttaaggctagat----------TTT-----------ATATAtgtg i cebCap1.NW_016107484v1 C 0 I 47 s aotNan1.NW_018491581v1 1537818 40 + 5364348 cagaatt-t-cttcctttttaaggctagat----------tat-----------atatatata i aotNan1.NW_018491581v1 C 0 I 29 s otoGar3.GL873618 4260316 52 + 7922563 cagactt-tccttcctttttaaggctgaat----------acttcattgcatggatataTATA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33127444 51 - 38964690 cagaatcac-cttccttgttaaggctgaataatattccactgt-----------acatacata i canFam3.chr26 C 0 I 13 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799681 0 - 1116856 C e saiBol1.JH378194 414265 7043 - 9212255 M a score=-11197.000000 s hg38.chr12_KI270834v1_alt 31562 3 + 119498 GTT s panTro5.chr12 127317868 3 + 137163284 GTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125668706 3 + 135337776 GTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8182081 3 - 8369578 GTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829945 3 + 106955855 TTT i nomLeu3.chr10 I 37 C 0 s rheMac8.chr11 123954355 2 + 133663169 G-T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201852 2 + 137757926 G-T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10601924 2 - 16319837 G-T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12224198 2 + 20526591 G-T i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119197035 2 + 128539186 G-T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 510308 2 + 6255621 G-T i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4572656 2 - 8658521 G-T i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114778196 2 + 124281992 -GT i calJac3.chr9 I 36 C 0 s otoGar3.GL873618 4260368 1 + 7922563 --C i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33127508 2 - 38964690 -GT i canFam3.chr26 I 13 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 799681 0 - 1116856 C e aotNan1.NW_018491581v1 1537858 29 + 5364348 I e cebCap1.NW_016107484v1 2836028 47 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=10920.000000 s hg38.chr12_KI270834v1_alt 31565 1 + 119498 T s panTro5.chr12 127317871 1 + 137163284 T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125668709 1 + 135337776 T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8182084 1 - 8369578 T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829948 1 + 106955855 T i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123954357 1 + 133663169 T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201854 1 + 137757926 T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10601926 1 - 16319837 T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12224200 1 + 20526591 T i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119197037 1 + 128539186 T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 510310 1 + 6255621 T i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4572658 1 - 8658521 T i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114778198 1 + 124281992 T i calJac3.chr9 C 0 I 1 s otoGar3.GL873618 4260369 1 + 7922563 T i otoGar3.GL873618 C 0 I 13 s canFam3.chr26 33127510 1 - 38964690 t i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 799681 1 - 1116856 T i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e aotNan1.NW_018491581v1 1537858 29 + 5364348 I e cebCap1.NW_016107484v1 2836028 47 + 4466143 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=55465.000000 s hg38.chr12_KI270834v1_alt 31566 6 + 119498 TTTTTC s panTro5.chr12 127317872 6 + 137163284 TTTTTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125668710 6 + 135337776 TTTTTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8182085 6 - 8369578 TTTTTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829949 6 + 106955855 TTTTTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123954358 6 + 133663169 TGTTTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201855 6 + 137757926 TGTTTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10601927 6 - 16319837 TGTTTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12224201 6 + 20526591 TGTTTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119197038 6 + 128539186 TGTTTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 510311 6 + 6255621 TGTTTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4572659 6 - 8658521 TGTTTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114778200 3 + 124281992 ---TTC i calJac3.chr9 I 1 C 0 s cebCap1.NW_016107484v1 2836075 6 + 4466143 TTTTTC i cebCap1.NW_016107484v1 I 47 C 0 s aotNan1.NW_018491581v1 1537887 6 + 5364348 TTTTTC i aotNan1.NW_018491581v1 I 29 C 0 s otoGar3.GL873618 4260383 6 + 7922563 TTTTTG i otoGar3.GL873618 I 13 C 0 s canFam3.chr26 33127512 6 - 38964690 tttttt i canFam3.chr26 I 1 I 203 s dasNov3.JH568189 799682 6 - 1116856 TTTTTA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=100974.000000 s hg38.chr12_KI270834v1_alt 31572 10 + 119498 ACACAATGTG s panTro5.chr12 127317878 10 + 137163284 ACACAATGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125668716 10 + 135337776 ACACAATGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8182091 10 - 8369578 ACACAATGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829955 10 + 106955855 ACACAATGTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123954364 10 + 133663169 ACACAGTGTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201861 10 + 137757926 ACACAGTGTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10601933 10 - 16319837 ACACAGTGTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12224207 10 + 20526591 ACACAATGTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119197044 10 + 128539186 ACACAATGTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 510317 10 + 6255621 ACACAATGTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4572665 10 - 8658521 ACACAATGTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114778203 10 + 124281992 ACACAGTGTG i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2836081 10 + 4466143 ACACAGTGTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1537893 10 + 5364348 ACAGAATGTG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4260389 9 + 7922563 GTAC-TTGTG i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 799688 10 - 1116856 GCACAATGTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e canFam3.chr26 33127518 203 - 38964690 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=4629902.000000 s hg38.chr12_KI270834v1_alt 31582 468 + 119498 ATCA---GGTGACTC-AAATATTTTGTTTTGAGGCATCAACCATCAGAGGTTCTTTCCTCACCTCACC------------TTTTTTTTCT----CCTGAGTCACACTTA--AAAAAAAATTAAATTAGATATTGCAGGGATAGGATTTGGATCCTCTGA--AGCCTGTAAG-TTGTATATGTTGTCATTAAGC-CAAACACGTATTGATTGGCAGAGTCCTGCTGAGAGTGTAAATGCCCAGAGCCTCCAGACC-TGG---GGGGTTGCCTCGGGTCGGGCAGCTTCAGGGTGTCAGGCTACCCCGGAGACCTCAGGCCTGGGCAGTGGGCACCGGGTACCGGCCGTGGACGAGA--GCTTTCTGTGCTTTTCCTGACCCTGA---TTTTCTCTGGAGTTGGTTGTTGAAAAAGATGTGTtttctggaaggaatataaaatggtgcagccactttg-gaaaacagcctggcagttcctcaacaggttaaaccgagagttaccat s panTro5.chr12 127317888 469 + 137163284 ATCA---GGTGACTC-AAATATTTTGTTTTGAGGCATCAACCATCAGAGGTTCTTTCCTCACCTCACC--------T---TTTTTTTTCT----CCTGAGTCACACTTA--AAAAAAAATTAAATTAGATATTGCAGGGATAGGATTTGGATCCTCTGA--AGCCTGTAAG-TTGTATATGTTGTCATTAAGC-CAAACACGTATTGATTGGCAGAGTCCTGCTGAGAGTGTAAATGCCCAGAGCCTCCAGGCC-TGG---GGGGTTGCCTCGGGTCGGGCAGCTTCAGGGTGTCAGGCTACCCCGGAGGCCTCAGGCCTGGGCAGCGGGCACCAGGAAATGGCCGTGGACGAGA--GCTTTCTGTGCCTTTCCTGACCCTGA---TTTTCTCTGGAGTTGGTTGTTGAAAAAGATGGGTtttctggaaggaatataaaatggtgcagccactttg-gaaaacagcctggcagttcctcaacaggttaaactgagagttaccat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125668726 469 + 135337776 ATCA---GGTGACTC-AAATATTTTGTTTTGAGGCATCAACCATCAGAGGTTCTTTCCTCACCTCACC--------T---TTTTTTTTCT----CCTGAGTCACACTTA--AAAAAAAATTAAATTAGATATTGCAGGGATAGGATTTGGATCCTCTGA--AGCCTGTAAG-TTGTATATGTTGTCATTAAGC-CAAACACGTATTGATTGGCAGAGTCCTGCTGAGAGTGTAAATGCCCAGAGCCTCCAGGCC-TGG---GGGGTTGCCTCGGGTCGGGCAGCTTCAGGGTGTCAGGCTACCCCGGAGGCCTCAGGCCTGGGCAGCGGGCACCAGGAAACGGCCGTGGACGAGA--GCTTTCTGTGCCTTTCCTGACCCTGA---TTTTCTCTGGAGTTGGTTGTTGAAAAAGATGTGTtttctggaaggaatataaaatggtgcagccactttg-gaaaacagcctggcagttcctcaacaggttaaactgagagttaccat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8182101 471 - 8369578 GTCA---GGTGACTCAAAATATTTTGTTTTGAGGCATCAACCATCAGAGGTTCTTTCCTCACCTCACCT-------T---TTTTTTTTCT----CCTGAGTTACACTTA--AAAAAAAATTAAATTAGATATTGCAGGGGTAGGATTTGGATCCTCTGA--AGCCTGTAAG-TTGTATATGTTGTCATTAAGC-CAAACATGTATTGATTGGCAGAGTCCTGCTGAGAGTGTAAATGCCCAGAGCCTCCAGGCC-TGG---GGGGTTGCCTTGGGTCGGGCAGCTTCAGGGTGTCAGGCTACCCCGGAGGCCTCAGGCCTGGGCAGCGGGCACCGGGTACCGGCCGTGGACGAGA--GCTTTCTGTGCCTTTCCTGACCCTGA---TTTTCTCTGGAGTTGGTTGTTGAAAAAGATGTGTtttctggaaggaatataaaatggtccagccactttg-gaaaacagcctggcagttcctcaacaggtttaaccaagagttaccat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97829965 468 + 106955855 ATCA---GGTGACTC-AAATATTTTGTTTTGAGGCATCAACCATCAGAGGTTCTTTCCTCACCTCACC--------T---TTTTTTTTCT----CCTGAGTCACACTT---AAAAAAAATTAAATTAGATATTGCTGGGGTAGAATTTGGATCCTCTGA--AGCCTGTAAG-TTGTATATGTTGTCATTAAGC-CAAACACATATTGATTGGCACAGTCTTGCTGAGAGTGTAAATGCCCAGAGCCTCCAGGCC-TGG---GGGGTTGCCTCGGGTCGGGCAGCTTCAGGGCGTCCGGCTACCCCGGAGGCCTCAGGCCTGGGCAGTGGGCACCAGGTACCGGCCGTGGATGAGA--GCTTTCTGTGCCTTTCCTGACCCTGA---TTTTCTCTGGAGTTGGTTGTTTAAAAAGATGTGTtttctggaaagaatgtaaaatggtgcagccactttg-gaaaacagcctggcagttcctcaacaggttaaactgagagttaccgt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123954374 469 + 133663169 ATCA---GATGACTC-GAATATTTTGTTTTGAGGCATCAACCATCAGAGGTTCTTTCCTCACCTCACC------------TTTTTTTTCT----CCTGAGTCACACTTA--GAAAAAAATTGAATTAGATATTGCTGGGGTAGGATTTGGATCCTCTGAAGAGCCTGTAAG-CTGTATATGTTGTCATTAAGC-CAAATACGTATTGATTGGCAGAGTCCTGCTGAGAATGTAAATGCTCAGAGCCTCCAGGCC-TGG---GGGGTTGCCTCGGGTCAGCCAGCTTCAGGGTGTCAGGCTACCCCGGAGGCCTCAGGCCTGGGCAGTGGGCACCGGGTACCGGCTGTGGATGAGA--GCTTTCTGTGCCTTTCCTGACCCTGA---TTTTCTCTGTAGTTGGTTG-TTAAAAGCATGTGTtttccggaaggaatgtaaaatggtgcagccacttta-gaaaacagcctggcagttcctcaacaggttaaaccgagagttaccat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128201871 469 + 137757926 ATCA---GATGACTC-GAATATTTTGTTTTGAGGCATCAACCATCAGAGGTTCTTTCCTCACCTCACC------------TTTTTTTTCT----CCTGAGTCACACTTA--GAAAAAAATTGAATTAGATATTGCTGGGGTAGGATTTGGATCCTCTGAAGAGCCTGTAAG-CTGTATATGTTGTCATTAAGC-CAAATACGTATTGATTGGCAGAGTCCTGCTGAGAATGTAAATGCTCAGAGCCTCCAGGCC-TGG---GGGGTTGCCTCGGGTCAGCCAGCTTCAGGGTGTCAGGCTACCCCGGAGGCCTCAGGCCTGGGCAGTGGGCACCGGGTACCGGCTGTGGATGAGA--GCTTTCTGTGCCTTTCCTGACCCTGA---TTTTCTCTGTAGTTGGTTG-TTAAAAGCATGTGTtttccggaaggaatgtaaaatggtgcagccacttta-gaaaacagcctggcagttcctcaacaggttaaaccgagagttaccat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10601943 469 - 16319837 ATCA---GATGACTC-GAATATTTTGTTTTGAGGCATCAACCATCAGAGGTTCTTTCCTCACCTCACC------------TTTTTTTTCT----CCTGAGTCACACTTA--GAAAAAAATTGAATTAGATATTGCTGGGGTAGGATTTGGATCCTCTGAAGAGCCTGTAAG-CTGTATATGTTGTCATTAAGC-CAAATACGTATTGATTGGCAGAGTCCTGCTGAGAATGTAAATGCTCAGAGCCTCCAGGCC-TGG---GGGGTTGCCTCGGGTCAGCCAGCTTCAGGGTGTCAGGCTACCCCGGAGGCCTCAGGCCTGGGCAGTGGGCACCGGGTACCGGCTGTGGATGAGA--GCTTTCTGTGCCTTTCCTGACCCTGA---TTTTCTCTGTAGTTGGTTG-TTAAAAGCATGTGTtttccggaaggaatgtaaaatggtgcagctacttta-gaaaacagcctggcagttcctcaacaggttaaaccgagagttaccat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12224217 470 + 20526591 ATCA---GATGACCC-GAATATTTTGTTTTGAGGCATCAACCATCAGAGGTTCTTTCCTCACCTCACC--------T---TTTTTTTTCT----CCTGAGTCACACTTA--GAAAAAAATTGAATTAGATATTGCTGGGGTAGGATTTGGATCCTCTGAAGAGCCTGTAAG-TTGTATATGTTGTCATTAAGC-CAAATACATATTGATTGGCAGAGTCCTGCTGAGAATGTAAATGCCCAGAGCCTCCAGGCC-TGG---GGGGTTGCCTCGGGTCGGGCAACTTCAGGGTGTCAGGCTACCCCGGAGGCCTCAGGCCTGGGCAGTGGGCACCGGGTACCGGCTGTGGATGAGA--GCTTTCTGTGCCTTTCCTGACCCTGA---TTTTCTCTGTAGTTGGTTG-TTAAAAGCATGTGTtttctggaaggaatgtaaaatggtgcagccacttta-gaaaacagcctggcagttcctcaacaggttaaaccgagagttaccat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119197054 471 + 128539186 ATCA---GATGACTC-GAATATTTTGTTTTGAGGCATCAACCATCAGAAGTTCTTTCCTCACCTCACC--------T---TTTTTTTTCT----CCTGAGTCACACTTA--GAAAAAAATTGAATTAGATATTGCTTGGGTAGGATTTGGATCCTCTGAAGAGCCTGTAAG-TTGTATATGTTGTCATTAAGC-GAAATACGTATTGATTGGCAGAGTCCTGCTGAGAGTGTAAATGCCCAGAGCCTCCAGGCC-TGG---GAGGTTGCCTCAGGTCAGGCAGCTTCAGGGTGTCAGGCTACCCCGGAGGCCTCAGGCCTGGGCAGTGGGCACCGGGTACCGGCCGTGGATGAGA--GCTTTCTGTGCCTCTCCTGACCCTGA---TTTTCTCTGTAGTTGGTTGTTTAAAAGCATGTGTtttctggaaggaatgtaaaatggtgcagccacttta-gaaaacagcctggcagttcctcaacaggttaaaccgagagttaccat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 510327 468 + 6255621 ATCA---GATGACCC-GAATATTTTGTTTTGAGGCATCAACCATCAGAGGTTCTTTCCTCACCTCACCT-------T---TTTTTTTTCT----CCTGAGTCACACTTA--GAAAAAAATTGAATTGGATATTGCTGGGGTAGGATTTGGATCCTCTGAAGAGCCTGTAAG-TTGTATATGTTGTCATTAAGC-CAAATACGTATTGATTGGCAGAGTCCTGCTGAGAATGTAAATGCTCAGAGCCTCCAGGCC-TGG---GGGATTGCCTCGGGTTGGGCAGCTTCAGGGTGTCAGGCTACCCCGGAGGCCTCAGGCCTGGGCAGTGGGCACCGGGTACCGGCTGTGGATGAGA--GCTTTCTGTGCCTTTCCTGACCCTGA---TTTTCTCTGTAGTTGGTCG-TTAAAAGCATGTGTtttctggaaggaatgtaaaatggtgcagtcacttta-gaaaacagcctggcagt---tcaacaggttaaaccgagagttaccat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4572675 445 - 8658521 ATCA---GATGACTC-GAATATTTTGTTTTGAGGCATCAACCATCAGAGGTTCTTTCCTCACCTCACC--------T---TTATTTTTCT----CCTGAGTCACACTTA--GAAAAAAATTAAATTAGATATTGCTGGGGTAGGATTTGGATCCTCTGAAGAGCCTGTAAG-TTG---------------------------TATTGATTGGCGGAGTCCTGCTGAGAATGTAAATGCCCAGAGCCTCCAGGCC-TGG---GGGGTTGCCTCGGGTCGGGCAGCTTCAGGGTGTCAGGCTACCCCAGAGGCCTCAGGCCTGGTCAGTGGGCACCGGGTACCGGCCGTGGATGAGA--GCTTGCTGTGCCTTTCCTGACCCTGA---TTTTCTCTGTAGTTGGTTGTTTAAAAGCATGTGTtttctggaaggaatgtaaaatgatgcagccacttta-gaaaacagcctagcagttcctcaacaggttaaaccaagagttaccat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114778213 467 + 124281992 ATCA---GATGATTC-AAATATTTTGTTTTGAGGCTTTAATCATCAGAGATTCTTCCCCCATACCACC--------C-----TTTTTTTT----TTTGAGTCACAC------AAAAAAATTAAATTAGATATTGCTGGTGTAGGATTTGGATCCTCTGA--AGCCTGTAAGGTTGCATCTGCTGTCATTAAGC-CAAAAATGTATTGACTGGCAGGGTCCTGCTGAGAGTTTAAGTGCCCTGAGCCTCTAGGCCGGGGGAGGGGGTCACCTCCGGTTGGGCAGCTTTAGGGCATGAAGCTACCCTGGAGGCCTCAGGCCTGGGCAGTGGGCAGCAGGTACTGGCCATGGACGGGA--GCTTTCTGTGCCTTTCGTGACCTTGA---TTTCCTCTGGAGATGGTTGTTTAAAAAGACGTGTtttctgaaaggaatgtaaaatggtgcagcc-ctttg-gaaaacaatctggtagttcctcaacaggttaaatcgagagttaccat i calJac3.chr9 C 0 I 117 s cebCap1.NW_016107484v1 2836091 472 + 4466143 ATCA---GATGATTC-AAATATTTTGTTTTGAGGCTTTAACCATCAGAGATTCTTCCCCCACCTCACC--------CCTGTTTTTTTTTT----CCTGAGTCACAC------AAAAAAATTAAATTAGATATTGCTGGGGTAGGATTTGGATCCTCTGA--AGGCTGTAAGGTTGCATATGTTGTCATTAAGCGAAAAAATGTATTGATTGGCAGGGTCCTGCCAAGAGTTAAAGTGCCCAGAGCCTCCAGGCC-GGTGCGGGGGTCACCTCGGGTCAGGCAGCTTCAGGGCATCAGGCTACTCCAGAGGCCTCAGGCCTGGGCAGTGGGCAGTAGGTACTGGCCACGGACCAGA--GCTTTCTGTGCCTTTCGTGACCCTGA---TTTTCTCTGGAGATGGTTGTTTAAAAAGATGTGTTTTCTG-AAggaatgtaaaatggtgcagccactttg-gaaaacaatctggcagttcctcagcaggttaaactgagagttaccgt i cebCap1.NW_016107484v1 C 0 I 90 s aotNan1.NW_018491581v1 1537903 468 + 5364348 ATCA---GATGATTC-AAATATTTTGTTTTGGGGTTTTAACCATCAGAGGTTCTTTCCCCACCCCCCC--------T---TTTTTTTTTC----CCTGAGTGACACTTA--GAAAAAAATTAAATTAGATATTGCTGGGGTAGGATTTGGATCCTCTGA--AGCCTATAAGTTTGCATATGTTGTCATTAAAC--CAAAACGTATTGATTGGCAGGGTCCTGCCGAGAGTTTAAGTGCCCAAAGCCTCCAGGCC-GGT---GGGGTCACCTCGGGTCGGGCAGCTTCAGGGCATCAGGCTACCCTGGAGGCCTCAGGCCTGGGCAGTGGGCAGCAGGTACCGGCCATGGATGAGA--GCTTTCTGTGCCTTTCGTGACCCTGA---TTTCCTCTGGAGATGGTTGTTT-AAAAGGTGTGTtttctggaaggaatgtaaaatggtgcagccactttg-gaaaacaatctggcagttcctcaacaggttaaaccgagagttaccat i aotNan1.NW_018491581v1 C 0 I 85 s otoGar3.GL873618 4260398 433 + 7922563 ATCA---GATGGCTC-AAATATTTTGTT--------TCAACTATTGGAGGTTCTTTTCCCTCCTCGCT--------A-----CCCCCCAC----CAAGAGTCACATTTA--CAAAAAAATTAACTTAGTTATTTCTGGGGTAGAATTATGCTGATCTGA--AGCCTGTGAGGTTGTAAATATTGTCATTAAGC-CAAAAGCTCCTTGGC--ACAGTGTTCTGCTGAGCGTGCAGGTGTCCC-AGTTGCTGGACC-AGG---ATAGCTGCCCAGGGACA---------------CTAGGCTACTC-AGATGCCTCAGATGTGCACAGTGGGCAGTA-------GTCATGGATAAGA--GCAATCTGTGCCTTTCCTAACCCTGG---TTTTCTCTCCAAGTGGTTATTTAAAAAGGcatattttctggcaggaatgtaaaatcatgaagccacttt--gaaagcagcctggcagttcctcagcaggttaaacacagggtcaccat i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33127721 451 - 38964690 ATCATGTGATAACTC-CAGTATTTTGTTTTGGGGT-CCAGCTATCTAATATTCTCTCCCCACCCCACC--------T---TTTTCTTTTT----CCAGAGTCACACTTA-CAAGGAAAATTAAATTAGATGTTATT--GATAAAGTGTTGATCATCTGA--AGTCTGTAAGGTTGTATATGTTGCCAGAAAGC-CATAAAT-TATGGCC--AAAGTGTTCTGCTGAGTGTATAAATGCCTAAAGCTGCACAACC-AGG---GTGGCCACCTTTGGTTGGGGTATCTCAGGGTATCAGGCTACCC-AGAAGCCTCGAGCTGGGGCAG-------CAGGTACTGGCCGCAGATGAGAGTGCTCTCTGCGCTTTTCCTGACTCTGACATTTTCCTCTGGAGGTGGTTGTTTAAAA---------------Agggaatgtaaaatggcatagcagctatgaaaaaacagtccggcagttccccaagtagttaatcatacagttaccac i canFam3.chr26 I 203 C 0 s dasNov3.JH568189 799698 401 - 1116856 ATCA---GAGAACTT-AAAAACTTTGTTTTGGGGC-CCACACATCTAATGTTCTTCCCCCACCACATCCCCCATTGT---TGTTGTTTTTAAAATCGGAGTCATACTTGTTTTAAAACATTAAATTAGATGTTGCTAGGGTAGAATTTTGGTCATCTGC--AGCCTGTAGGGCTGGCTATGTTGTCATTATAT-----------------GGACATGTTCTGCTGAGA-TATAAATGCCCAGAGC-TGCAGGGC-TGG---GTGGCTGCCTTGG-------------------------CAGCCCGGAATCTT---------------------AGGTGCCAGCCATGGAGGACG--GCTCGCTGTACCTCTCTCAGCTTTGACC-TTTTCTCTGGAGTTAGTTGTCTAGAAAGATGTGTtttctggcgggaatgtgaaatggtg-agccaccttg-gaaaatggtctggcagttcctc------------caagag------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e saiBol1.JH378194 414265 7043 - 9212255 M a score=933116.000000 s hg38.chr12_KI270834v1_alt 32050 92 + 119498 aagacccagcaatttcactgctggggatctacccaag---aatgaggacgaacgtccgctcagaa--ttgttcatgaatgtccggagcagcattatt s panTro5.chr12 127318357 92 + 137163284 aagacccagcaatttcactgctggggatctacccaag---aatgaggacgaacgtccgctcagaa--ttgttcacgaatgttcggagcagcattatt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125669195 92 + 135337776 aagacccagcaatttcactgctggggatctacccaag---aatgaggacgaacgtccgctcagaa--ttgttcacgaatgttcggagcagcattatt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8182572 92 - 8369578 aagacccagcaatttcactgctggggatctacccaag---aatgaggacgaatgtccgctcagaa--ttgttcacgaatgttcggagcagcattatt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97830433 92 + 106955855 aagactcagcaatttcactactggggatctacccgag---agtgaggatgaacgtccgctcagaa--ttgttcacgaatgtccggagcagcattatt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123954843 91 + 133663169 aagacctggcaatttcactact-gggatctacccaag---agtgaggataaacatctgctcagaa--ttgttcacgaatgtctggagcagcattatt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128202340 91 + 137757926 aagacctggcaatttcactact-gggatctacccaag---agtgaggataaacatctgctcagaa--ttgttcacgaatgtctggagcagcattatt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10602412 91 - 16319837 aagacctggcaatttcactact-gggatctacccaag---attgaggataaacatctgctcagaa--ttgttcacgaatgtctggagcagcattatt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12224687 91 + 20526591 aagacctggcaatttcactact-gggatctacccaag---agtgaggataaacatctgctcagaa--ttgttcacgaatgtctggagcagcattatt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119197525 91 + 128539186 aagacctggcaatttcactact-gggatctacccaag---agtgaggacgaacatctgctcagaa--ttgttcacgaatgtctggagcagcattatt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 510795 91 + 6255621 aagaccaggcaatttcactact-gggatctacccaag---agtgaggacaaacatctgctcagaa--ttgttcacgaatgtctggagcagcattatt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4573120 91 - 8658521 aagacctggcaatttcactact-gggatctacccaag---agtgaggacgaacatctgctcagaa--ttgttcatgaatgtctggagcagcattatt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114778797 90 + 124281992 AAgacccagcagtttccctcttggagatctaccc--g---agtgaggactaacgtccagtcagaa--ttgttcacaaatgttcagagcaacaatatt i calJac3.chr9 I 117 C 0 s saiBol1.JH378194 421327 92 - 9212255 AAgacccagcaatttctctagtggggatcgacccaag---agtgaggacgaacgtccagtcagaa--ttgttcacaaatgttcggagcagcaatatt i saiBol1.JH378194 M 7043 C 0 s cebCap1.NW_016107484v1 2836653 92 + 4466143 AAgacccagcaatttccctactggggatctacccaag---agtgaggacgaacgtccagtcagaa--ttgttcacaaatgtttggagcagcaatgtt i cebCap1.NW_016107484v1 I 90 C 0 s aotNan1.NW_018491581v1 1538456 90 + 5364348 AAgactcagcaatttccctactggggatctacct--g---agtgaggatgaacgtccagtcagaa--ttgttcacaaatgttcggagcagcaatatt i aotNan1.NW_018491581v1 I 85 C 0 s otoGar3.GL873618 4260831 97 + 7922563 ataacccagcagttctttgcctgtgtatttacccaagagaagtgagaaaaaatgtctacccagaaactcgttcatgagtcttcatagcatcgtcatt i otoGar3.GL873618 C 0 I 1661 s canFam3.chr26 33128172 97 - 38964690 atgccccagcaattccactactatgtatctacctgagagaagtgagaatatatgtccatgcaagaacttatacacaaatgttcatagcactgttatt i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 800099 54 - 1116856 ---------------------------------------aaatgaaaac--acatccacacaaaa--cacgtcctgaatgttcatagcagcgttatt i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I a score=3024490.000000 s hg38.chr12_KI270834v1_alt 32142 305 + 119498 cataatagccaaaaagtgggaacaac-cc-aacatccatcagttgatggatccactgctgaaacagaatgtggtctgtccatccc-----atgggatatattttggccatagaaaggaatgcagc----acgcgtgctacaacatggatgagctttgaaaacatgc-taagcgaaagaagccagatgtgagagatcacacattctagg--atcccatttccatgaa---------atgcccagaatacgcaaatccgtagagaca-ggaagtagatgagtggttgccaggggctggggga---aaggggattgggaga---------g-------atgggtacagggt s panTro5.chr12 127318449 305 + 137163284 cataatagccaaacagtgggaacaac-cc-aacatccatcagttgatggatcaactgctgaaacagaatgtggtctgtccatccc-----atgggatatattttggccatagaaaggaatgcagc----acgcgtgctacaacatggatgagctttgaaaacatgc-taagcgaaagaagccagatgtgagagatcacacattctagg--atcccatttccatgaa---------atgcccagaatacgcaaatccgtagagaca-gaaagtagatgagtggttgccaggggctggggga---aaggggtttgggaga---------g-------atgggtacagggt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125669287 305 + 135337776 cataatagccaaaaagtgggaacaac-cc-aacatccatcagttgatggatcaactgctgaaacagaatgtggtctgtccatccc-----atgggatatattttggccatagaaaggaatgcagc----acgcgtgctacaacatggatgagctttgaaaacatgc-taagcgaaagaagccagatgtgagagatcacacattctagg--atcccatttccatgaa---------atgcccagaatacgcaaatccgtagagaca-gaaagtagatgagtggttgccaggggctggggga---aaggggtttgggaga---------g-------atgggtacagggt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8182664 305 - 8369578 cataatagccaaaaagtgggaacaac-cc-aacatccatcagttgatggatcaactgctgaaacagaatgtggtctgtccatccc-----atgagatatattttggccacagaaaggaatgcagc----acgcgtgctacaacatggatgagctttgaaaacatgc-taagcgaaagaagccagatgtgagagatcacacattctagg--atcccatttccatgaa---------atgcccagaatacgcaaatccgtagagaca-gaaagtagatgagtggttgccaggggctggggga---aaggggattgggaga---------g-------atgggtacagggt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97830525 305 + 106955855 cataatagccaaaaagcgggaacaac-cc-aacatccatcagttgatggatcaactgctgaaacagaatgtggtctgtccatccc-----atgggatatattttgtccatagaaaggaacgcagc----ctgcatgctacaacatggatgagctttgaaaacacgc-taagcgaaagaagccagatgtgagagatcacacattctagg--atcccatttccatgaa---------atgcccagaatacacaaatccatagagaca-gaaagtagatgagtggttgccaggggctggggga---aaagggattgggaga---------g-------atgggtacagggt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123954934 308 + 133663169 cataatagccaaaaagtggtagcaac-cc-aacatccctcaattgatggatcaactgctgaaacagaatgtggtctgtccatgcc-----atgggatatcttttggccatagaaaggaatgcaggactgacgcatgctgcaacatggatgagctttgaaaacacgc-taagcaaaagaagccagatgtgagagatcacacattctagg--atcccatttccatgaa---------atgcccagaatacgcaaatccatagaggta-gaaagtagatgagtggttgccaggggctggggga---aaggggact-ggaga---------g-------atgggtgcagggt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128202431 308 + 137757926 cataatagccaaaaagtggtagcaac-cc-aacatccctcaattgatggatcaactgctgaaacagaatgtggtctgtccatgcc-----atgggatatcttttggccatagaaaggaatgcagcactgacgcatgctgcaacatggatgagctttgaaaacacgc-taagcaaaagaagccagatgtgagagatcacacattctagg--atcccatttccatgaa---------atgcccagaatacgcaaatccatagagata-gaaagtagatgagtggttgccaggggctggggga---aaggggact-ggaga---------g-------atgggtgcagggt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10602503 308 - 16319837 cataatagccaaaaagtggtagcaac-cc-aacatccctcaattgatggatcaactgctgaaacagaatgtggtctgtccatgcc-----atgggatatcttttggccatagaaaggaatgcagcactgatgcatgctgcaacatggatgagctttgaaaacacgc-taagcaaaagaagccagatgtgagagatcacacattctagg--atcccatttccatgaa---------atgcccagaatacacaaatccatagagata-gaaagtagatgagtggttgccaggggctggggga---aaggggact-ggaga---------g-------atgggtgcagggt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12224778 308 + 20526591 cataatagccaaaaagtggtagcaac-cc-aacatccattaattgatggatcaactgctgaaacagaatgtggtctgtccatgcc-----atgggatatcttttggccatagaaaggaatgcagcgctgacgcgtgctgcaac-tggatgagctttgaaaacacgc-taagcgaaagaagccagatgtgagagatcacacattctaga--atcccatttccatgaa---------atgcccagaatacgcaaatccgtagagata-gaaagtagatgagtggttgccaggggctggggga---aagggcattgggaga---------g-------atgggtgcagggt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119197616 309 + 128539186 cataatagccaaaaagtgggaacaac-cc-aacatccatcaattgatggatcaactgctgaaacagaatggggtctgtccgtgcc-----atgggatatcttttggccctagaaaggaatgcagcgctgacgcatgctgcaacatggatgagctttgaaaacacgc-taagcgaaagaagccggatgtgagagatcacacattctagg--atcccatttccatgaa---------atgcccagaatatgcaaatccatagagaca-gaaagtagatgagtggttgccaggggctggggga---aaggggaatgggaga---------g-------atgggtacagggt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 510886 309 + 6255621 cataatagccaaaaagtggtagcaac-cc-aacatccatcaattgatggatcaactgctgaaacagaatgtggtctgtccatgcc-----atgggatatcttttggccatagaaaggaatgcagcgctgacgcatgctgcaacatggatgagctttgaaaacacgc-taagcgaaagaagccagatgtgagagatcacacattctagg--atcccatttccatgaa---------atgcccagaatacgcaaatccatagagata-gaaagtagatgagtggttgccaggggctggggga---aaggggattgggaga---------g-------atgggtgcagggt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4573211 309 - 8658521 tataatagccaaaaagtgagaacaac-cc-aacatccatcaattgatggatcaactgctgaaacagaatgtggtctgtccatgcc-----atgggatagattttggccatagaaaggaatgcagcgctgacacgtgctgcaacatggatgagctttgaaaacacgc-taagcgaaagatgccagatgtgagagatcacacattctagg--atcccatttccatgaa---------atgcccagaatacataaatccacagagaca-gaaagtagatgagtggttgccaggggctgggggc---aaggggattgggaga---------g-------atgggttcagggt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114778887 281 + 124281992 cataatagccaaaacgtgggaacagc-ct-ggtatccatcaattgatggatcagctgctgaaacagaatgtggtctgcccatccc-----atgggatatatattggccatagaaagtaatgcagcaccgacacatgctacatcgtggatgaaccttgaaaacgtgc-taagtgaaagaagccagatgtgagaggtcacatcttctagg--atcccacttccgtaaa---------atgtccagaataggcaaatccatagagaca-----------------------------ggggga---aaggggattgggaga---------g-------aggggtacagggt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 421419 263 - 9212255 cataatagccaaaaagtgggaacaac-cc-ggtgtccatcaactgatggatcaactgctgaaacagaatgtggtctgcccatccc-----gtgggatagacattggccatagaaaggaatgcagcactgacccacgctacattgtggatgaaccttgaaaacgcgc-taggtgaaagaagccagatgtgagaggtcacatcttctagg--atcccacttccatgaa---------atgtccagaataggcaaatgcat--------------------------------------------------GATTGGGAGA---------G-------atgggtacagggt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2836745 260 + 4466143 t---atagccaaaaagtgggaacaac-cc-agtatccatcaactgatggatcaactgctgaaacagaatgtggtctgcccatccc-----atgggatatgcattggccataaaaaggaatgcagcactgacacatgctacgtcgtggatgaaccttgaaaacacgc-taagtgaaagaagccagatgtgagagatcacatcttctagg--agcccatttccgtgaa---------atgtccagaataggcaaatccat--------------------------------------------------gattgggagg---------g-------atgggtacagggt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1538546 309 + 5364348 cataatagccaaaaagtgggaacaac-cc-aatatccatcaattgatggatcaactgctgaaacagaatgtggtctgcccacccc-----atgggatatatattggccatagaaaggaacgcggcactgatacatgctacatcatggatgaaccttgaaaacgcgc-taaatgaaagaagccagatgtgagagatcacatcttctagg--atcccacttccgtgaa---------atgtgcagaataggcaaatccatagagaca-gaaagcagattagtggttgccaggggctggggga---aaggggattgggaga---------g-------atgggtacagggt i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33128269 311 - 38964690 cataagagcccaaaa-tagaatcaataca-aatattcatccatggatgaa---------aaaaccagatgagatcttgcca---c-----acagaatagtatttggccgcaaaaaagcatgcagtcctgacccacgctgcaatgtggatgaaccctgaaaacatgc--gagtgagagtagccagacacaaaggcctgcatagactgtgtaattccatttacgtcactctgtttctgtgtggagaatggggaaaaccatggagata-gaaagctgatgggcag-tgccagtgtctggaggc---a--gggttgggaaga---------ggtgattaatgaatacagagt i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 800153 312 - 1116856 -ttaatagctcaacattagaaacatc-ccaaatgtgcatcagctgatgaatggat-----aaatgaaatatggcatattcatattcaataatgaaatattattcagccataaaaaggaatgaagttctgacacaca---------gaaaaaactcgaaaaattcttttgtgtgaaagaagccagtcataaaagaccacaaattgtatg----tctatttatatgaa---------atgtccagaataggcaaatctatagagacaagactgtagattagtagttgccagacatcaggggaggtaggggaattgggaggctaatggcta-------aagagtacagggc i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e otoGar3.GL873618 4260928 1661 + 7922563 I a score=1344530.000000 s hg38.chr12_KI270834v1_alt 32447 131 + 119498 ---ttt-----------------------------------ttgtgggg---agggg----tgataaaaatgttctaaaattgctcatggggatggttgcacaactctgtgaatatactggaaa-ccattgacttgtaccctttc-aa-ag-gtaaattgtatggcgtgtgtgttgtatc s panTro5.chr12 127318754 131 + 137163284 ---ttt-----------------------------------ttgtgggg---agggg----tgataaaaatgttctaaaattgctcatggggatggtcgcacaactctgtgaatatactggaaa-ccattgacttgtaccctttc-aa-ag-gtaaattgtatggcgtgtgtgttgtatc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125669592 131 + 135337776 ---ttt-----------------------------------ttgtgggg---agggg----tgataaaaatgttctaaaattgctcatggggatggtcgcacaactctgtgaatatactggaaa-ccattgacttgtaccctttc-aa-ag-gtaaattgtatggcgtgtgtgttgtatc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8182969 131 - 8369578 ---ttt-----------------------------------ttgtgggg---agggg----tgataaaaatgttctaaaattgctcatggggatggttgcacaactctgtgaatatactggaaa-ccattgacttgtaccctttc-aa-ag-gtaaattgtatggcgtgtgtgttgtatc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97830830 130 + 106955855 ---ttt-----------------------------------ttgcgggg---agggg----tgataaaaatgttctaaaattgctcatggggatggttgcacaactctgtgaatatactggaaa-ccattgacttgta-cctttc-aa-ag-gtaaattgtatggcatgtgtgttgtatc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123955242 130 + 133663169 ---ttt-----------------------------------ttgcggag---agggg----tgataaaaatgttctaaaattgctcgtggggatggttgcacaagtctctgaatatactggaaa-ccattgacttgtaccctttc-aa-ag-gtaaattgta-ggcatgtgtgttgtatc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128202739 130 + 137757926 ---ttt-----------------------------------ttgcggag---agggg----tgataaaaatgttctaaaattgctcgtggggatggttgcacaagtctctgaatatactggaaa-ccattgacttgtaccctttc-aa-ag-gtaaattgta-ggcatgtgtgttgtatc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10602811 130 - 16319837 ---ttt-----------------------------------ttgcggag---agggg----tgataaaaatgttctaaaattgctcgtggggatggttgcacaagtctctgaatatactggaaa-ccattgacttgtaccctttc-aa-ag-gtaaattgta-ggcatatgtgttgtatc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12225086 130 + 20526591 ---ttt-----------------------------------ttgcggag---agggg----tgataaaaatgttctaaaattgctcgtggggatagttgcacaagtctctgaatatactggaaa-ccattgacttataccctttc-aa-ag-gtaaattgta-ggcatgtgtgttgtatc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119197925 130 + 128539186 ---ttt-----------------------------------ttccgggg---aggag----tgataaaaatgttctaaaattgctcagggggatggttgcacaagtctctgaatatactggaaa-ccattgacttgtaccctttc-aa-ag-gtaaattgta-ggtgtgtgtgttgtatc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 511195 130 + 6255621 ---ttt-----------------------------------ttgcggag---agggg----tgataaaaatgttctaaaattgctcgtggggatggttgcacaagactctgaatatactggaaa-ccattgacttataccctttc-aa-ag-gtaaattgta-ggcatgtgtgttgtatc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4573520 130 - 8658521 ---ttt-----------------------------------ttgcgggg---agggg----tgataaaaatgttctaaaattgctcatggggatggttgcacaagtctctgaatatactggaaa-cgattgacttgtaccctttc-aa-ag-ataaattgta-ggcatgtgtgttgtatc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114779168 133 + 124281992 ---ttt-----------------------ttttttttttttttgcagcg---agagg----tgataaaaatattctaaagttgtttatggggatggttgcacaactccgtgaatgtgccggaaa-cgactgactt-----------aa-gg-gtaaattgtacggtgtgtgtgttatatc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 421682 156 - 9212255 ---ttttgttgttgttgttgttgttgttatttttttgttttttgcaggg---agagg----taataaaaatgttctaaaattgcttatggggatgtttgcacaactccgtgaatatgctggaaa-ccattgactc-----------aa-gg-gtaaattgtacagtgtgtgtgttatatc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2837005 138 + 4466143 ---tttttttt------------------ttttttttttttccccaggg---agagg----tgataaaaatgttctaaaattgcttatggggatgtttgcacaactctgtgaatatgctggaaa-ccattaactt-----------aa-gg-gtaaattgtacggtgtgtgtattatatc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1538855 143 + 5364348 ---ttt-----------------------tttgtttttttttttcaggg---agagg----tgataaaaatgttctaaaattgcttatggggatgtttgcacaactccatgactgtgctgg-aa-ccattgacttgtaccctttcaaa-gg-gtaaattgtacggtgtgtgtgttatgtc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4262589 130 + 7922563 ---TTT-----------------------------------TTGTAGGG---Agggg----tggtaaaaatgttctaaa-ttgattacggtgatagttgcacaactcaggaaatatactaggaa-ccatcgagttgtacacttta-aa-tg-gtgaattgtatgctatgtgaattatacc i otoGar3.GL873618 I 1661 I 219 s canFam3.chr26 33128580 124 - 38964690 ---ttt-----------------------------------ttggggaggatatggg----tcatgaaaatgctctaaaattgaatggagtaattggtgcaca------------tactaaaaacccactgaattgcacacttga-aa-tgagtgaaatgtgtggaatatgaattacagc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 800465 135 - 1116856 ttcttt-----------------------------------ttggggtg---atgaaaaattcataaattgattctaaaattg----tgggaatggatgcccaactctgtgaacatacagaaaa-ccactgaattgtacacttta-aattg-gtgaattatatggtatgtgaattatatc i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I a score=205249.000000 s hg38.chr12_KI270834v1_alt 32578 20 + 119498 gcaataaaa-------ctgCGTCAGAA---- s panTro5.chr12 127318885 19 + 137163284 gcaataaaa-------ctgctTCAG-A---- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125669723 19 + 135337776 gcaataaaa-------ctgctTCAG-A---- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8183100 19 - 8369578 gcaataaaa-------ctgctTCAG-A---- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97830960 19 + 106955855 tcaataaaa-------ctGCTTCAG-A---- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123955372 19 + 133663169 tcaataaaa-------ctgctTCAG-G---- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128202869 19 + 137757926 tcaataaaa-------ctgctTCAG-G---- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10602941 19 - 16319837 tcaataaaa-------ctgctTCAG-G---- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12225216 19 + 20526591 tcaataaaa-------ctgttTCAG-G---- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119198055 19 + 128539186 tcaataaaa-------ctgctTCAG-G---- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 511325 19 + 6255621 tcaataaaa-------ctgttTCAG-G---- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4573650 19 - 8658521 tcaataaaa-------ctgctTCAG-G---- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114779301 19 + 124281992 tcaataaaa-------ctgctTCAG-A---- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 421838 19 - 9212255 tcaataaaa-------ctGCTTCAG-A---- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2837143 19 + 4466143 tcaataaaa-------ctgctTCAG-A---- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1538998 19 + 5364348 tcaataaaa-------ctTCTTCAG-A---- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4262938 26 + 7922563 gcaataaaataagactctgtctcta-a---- i otoGar3.GL873618 I 219 C 0 s canFam3.chr26 33128704 19 - 38964690 tcaacaaag-------ctgtttaaa-a---- i canFam3.chr26 C 0 I 7 s dasNov3.JH568189 800600 23 - 1116856 tcaataaag-------ctgctgtta-attaa i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e mm10.chr5 124784023 1083 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I a score=67858.000000 s hg38.chr12_KI270834v1_alt 32598 10 + 119498 -AAAAGATAAT s panTro5.chr12 127318904 10 + 137163284 -AAAAGATAAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125669742 10 + 135337776 -AAAAGATAAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8183119 10 - 8369578 -AAAAGATAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97830979 10 + 106955855 -AAAAGGTAAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123955391 10 + 133663169 -AAAAGATCAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128202888 10 + 137757926 -AAAAGATCAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10602960 10 - 16319837 -AAAAGATCAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12225235 10 + 20526591 -AAAAGATCAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119198074 10 + 128539186 -AAAAGATCAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 511344 10 + 6255621 -AAAAGATCAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4573669 10 - 8658521 -AAAAGATCAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114779320 9 + 124281992 -AAAAGAT-AG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 421857 9 - 9212255 -AAAAGAT-AG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2837162 9 + 4466143 -AAAAGAT-AG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1539017 9 + 5364348 -ACAAGAT-AG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4262964 10 + 7922563 -aaaaaaaaaa i otoGar3.GL873618 C 0 I 7 s mm10.chr5 124785106 8 + 151834684 -AGAAGATA-- i mm10.chr5 I 1083 C 0 s canFam3.chr26 33128730 7 - 38964690 -AAAAGGT--- i canFam3.chr26 I 7 I 1 s dasNov3.JH568189 800623 10 - 1116856 aaaAAGAC-AT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438007 185 - 31815103 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I a score=3394690.000000 s hg38.chr12_KI270834v1_alt 32608 223 + 119498 GTTTTAGCCCAGCTGCCATTGTTTGTCCCGCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGGCCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAAGTGAGTATGACCTC-CGTAGGGAGGGCCTGGCTGCCA--CAG--GGG--CTCACAGTATATGTTTGGTGCCAGTATTA s panTro5.chr12 127318914 223 + 137163284 GTTTTAGCCCAGCTGCCATTGTTTGTCCCGCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACAACGATGGTGGTGGGGCCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAAGTGAGTATGACCTC-CGTGGGGAGGGCCTGGCTGCCA--CGG--GGG--CTCACAGTATATGTTTGGTGGCAGTATTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125669752 223 + 135337776 GTTTTAGCCCAGCTGCCATTGTTTGTCCCGCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACAACGATGGTGGTGGGGCCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAAGTGAGTATGACCTC-CGTGGGGAGGGCCTGGCTGCCA--CGG--GGG--CTCACAGTATATGTTTGGTGGCAGTATTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8183129 223 - 8369578 GTTTTAGCCCAGCTGCCATTGTTTGTCCCGCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGGCCCACCAGAGGGGGCAAGTCCGTCATCATTAACACTCTGTGTCAGGCCCAGACCAAGTGAGTATGACCTC-CGTGGGGAGGGCCTGGCTGCCA--CGG--GGG--CTCACAGTATATGTTTGGTGGCAGTATTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97830989 223 + 106955855 GTTTTAGCCCAGCTGCCATTGTTTGTCCCACAGGTGGATAAAGTGGTTCAGATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTCGTGGGACCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACCCTGTGTCAGGCCCAGACCAAGTGAGTATGACCTC-CGTGGAGAGGGCCTGGCTGCCA--CGG--GGG--CTCACAGTATATGTTTGGTGGCAGTATTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123955401 221 + 133663169 GTTTTAGCCCAACTGCCATTGTTTGTCCCGCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGACCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAAGTGAGTATGACCTC-CATGGGGAGGGCCTGACTGCCA----G--GGG--CTCACGGTATATGTTTGGTGGCAGTATTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128202898 222 + 137757926 GTTTTAGCCCAACTGCCATTGTTTGTCCCGCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGACCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAAGTGAGTATGACCTC-CATGGGGAGGGCCTGACTGCCG---GG--GGG--CTCACGGTATATGTTTGGTGGCGGTATTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10602970 222 - 16319837 GTTTTAGCCCAACTGCCATTGTTTGTCCCGCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGACCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAAGTAAGTATGACCTC-CATGGGGAAGGCCTGACTGCCA---GG--GGG--CTCACGGTATATGTTTGGTGGCAGTATTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12225245 222 + 20526591 GTTTTAGCCCAACTGCCATTGTTTGTCCCGCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGACCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAAGTGAGTATGACCTC-CATGGGGAGGGCCTGACTGCCA---GG--GGG--CTCACGGTGTATGTTTGGTGGCAGTATTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119198084 222 + 128539186 GTTTTAGCCCAACTGCCATTGTTTGTCCCGCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGACCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAAGTGAGTATGACCTC-CGTGGGGAGGGCCTGACTGCCA---GG--GGG--CTCACGGTGTATGTTTGGTGGCAGTATTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 511354 221 + 6255621 GTTTTAGCCCAACTGCCATTGTTTGTCCTGCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGACCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAAGTGAGTATGACCTC-CAT-GGCAGGGCCTGACTGCCA---GG--GGG--TTCACGGTGTATGTTTGGTGTCAGTATTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4573679 222 - 8658521 GTTTTAGCCCAACTGCCATTGTTTGTCCCGCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGACCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAAGTGAGTATGACCTC-CGTGGGGAGGGCCTGACTGCCA---GG--GGG--CTCACGGTATATGTTTGGTGGCAGTATTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114779329 221 + 124281992 GTTTTAGCTCAGCTGCCACTGTTTGTCCTGCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACAATGGTGGTGGGGCCCACAGGCGGGGGCAAGTCTGTCGTCATTAACACGCTGTGTCAGGCCCAGAGCAAGTGAGTATGAGCTC-CATGGGGAGGGCCTGGCTG-CA---GG--GGG--CGCACTGGGAAGGTGTGGCAGCCGTATTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 421866 221 - 9212255 GTTTTAGCTCAGCTGCCACTGTTGTTCCCGCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACAATGGTGGTGGGGCCCACAGGCGGGGGCAAGTCCGTAGTCATTAACACGCTGTGTCAGGCCCAGAGCAAGTGAGTATGAGCCC-CATGGGGAGGGCCTGGCTG-CA---GG--GGG--TGCACAGGGAACGTTTGGTGGCCGTGTTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2837171 221 + 4466143 GGTTTAGCTCAGCTGCCACTGTGTGTCCCGCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACCATGGTGGTGGGGCCCACAGGCGGGGGCAAGTCCGTCGTCATTAACACGCTGTGTCAGGCCCAGAGCAAGTGAGTATGAGCTC-CATGGGGAGGGCCTGGCTG-CA---GG--GGG--CGCACAGCGAACGTTTGGTGGCCGTATTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1539026 220 + 5364348 GTTTT-GCTCAGCTGCCACCGTTTGTCCCGCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGGCCCACAGGTGGGGGCAAGTCCGTCGTCATTAACACGCTGTGTCAGGCCCAGAGCAAGTGAGTATGAGCTC-CGTGGGGAGGGCCTGGCTG-CA---GG--GGG--CGCACAGGGAACGTTTGGTGGCGGTATTA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9438192 223 - 31815103 GTTTTAACCCAGCTGCCGATGCTTGTCCCGCAGGTGGATAAAGTGGTTCAGATGTTCGAGACCATGCTGACCCGCCACACGACAATGGTGGTGGGGCCCACGGGCGGGGGCAAGTCCGTGGTCATTAACACCCTGTGTCAGGCCCAGACCAGGTGAGTGTGGCCCCGTGTCG---GGGCCCGGTTGCTGCCCGG--TGG--TTCACGGGAGACGTTTGGTGGCCGCATTC i micMur3.chr21 I 185 C 0 s otoGar3.GL873618 4262981 224 + 7922563 ATTTTAACTCAGCTGCCTATGCTTGTCCCACAGGTGGACAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACAACAATGGTGGTAGGGCCTACGGGAGGGGGCAAGTCTGTGGTCATTAATGCCCTGTGTCAGGCCCAGACCAGGTGAGTACAGTTTC-TATGGGAAGGGCCTGGTTGCTG--GGG--TGG-TTTCACAGGAAGCGTTTGGTGGCACTATTA i otoGar3.GL873618 I 7 C 0 s mm10.chr5 124785114 222 + 151834684 GGTTTAACGATTCTGCCCATGTCTGTCCCACAGGTGGATAAAGTGGTCCAAATGTTCGAGACCATGCTGACCCGCCACACCACAATGGTGGTAGGGCCTACAGGAGGGGGCAAGTCCGTAGTCATCAATACTCTGTGTCAGGCCCAGACAAAGTGAGTGT--CCTG-CGGGGGTTGGGGGCATTTGCCA---GG--GTGGCCTCTTGGGAAGTGTTTGGCGAGAGCTTTA i mm10.chr5 C 0 I 550 s canFam3.chr26 33128738 220 - 38964690 TGTTTACCCTAGCTGCTAATCTTTGCCCCACAGGTGGATAAAGTGGTTCAGATGTTTGAGACCATGTTAACCCGCCACACGACCATGGTGGTGGGGCCCACAGGAGGGGGCAAGTCTGTGGTCATTAATGCTCTGTGTCAGGCCCAGACCAAGTAAGTATGACCCT-GA--GGTAGGGCCTGGTTGCCA---GG--GTG--GTTTCCTGGTATGGTTGTTGGTGGTATCA i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 800633 216 - 1116856 ATTTCAACCCAGCCGTCAACATCTCTCCTGCAGGTGGATAAAGTGGTGCAAATGTTCGAGACCATGCTGACCCGCCACACAACAATGGTGGTGGGGCCTACCGGAGGGGGCAAGTCTGTGGTCATTAACGCTTTGTGTCAGGCCCAGACCAAGTAAGTGCAGCTGT-----GGGAGCGCC-GGTTGCCA---GGCTGGC--TTCACCGTCCG---TTGGTGGCAGCATTA i dasNov3.JH568189 C 0 I 5 e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I a score=678304.000000 s hg38.chr12_KI270834v1_alt 32831 45 + 119498 CCAAGTCCCACTTTGCTCTCTGATTTCCTGGGAGGGTAAATTTGT s panTro5.chr12 127319137 45 + 137163284 CCAAGTCCCACTTTGCTCTCTGATTTCCTGGGAGGGTAAATTTGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125669975 45 + 135337776 CCAAGTCCCACTTTGCTCTCTGATTTCCTGGGAGGGTAAATTTGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8183352 44 - 8369578 CCAAGTCCCACTTTGCTCTCTG-TTTCCTGGGAGGGTAAATTTGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97831212 45 + 106955855 CCAAGTCCCACTTTGCTCTCTGATTTCCTGGGAGGGTAAATTTGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123955622 45 + 133663169 CCAAGTCCCACTTTGCTCTCTGATTTCCTGGGAGGGTAAATTTGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128203120 45 + 137757926 CCAAGTCCCACTTTGCTCTCTGATTTCCTGGGAGGGTAAATTTGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10603192 45 - 16319837 CCAAGTCCCACTTTGCTCTCTGATTTCCTGGGAGGGTAAATTTGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12225467 45 + 20526591 CCAAGTCCCACTTTGCTCTCTGATTTCCTGGGAGGGTAAATTTGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119198306 45 + 128539186 CCAAGTCCCACTTTGCTCTCTGATTTCTTGGGAGGGTAAATTTGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 511575 45 + 6255621 CCAAGTCCCACTTTGCTCTCTGATTTCCTGGGAGGGTAAATTTGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4573901 45 - 8658521 CCAAGTCCCACTTTGCTCTCTGATTTCCTGGGAGGGTAAATTTGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114779550 45 + 124281992 CCGAGTACCACTGAGCTCTCTGATTTCCTGGGAGGGTAAATTTGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 422087 45 - 9212255 CCGAGTCCCACTGAGCTCTCTGATTTCCTGGGAGGGTAAATTTGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2837392 45 + 4466143 CCGAGTCCCACTGAGCTCTCTGATTTCCTGGGAGGGTAAAGTTGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1539246 45 + 5364348 CCGAGTCCCACTGAGCTCTCTGATTTCCTGGGAGGGTAAATTTGT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9438415 45 - 31815103 CCACGTCCCACTGTGCTCTCTGATTTCCTGGGAGGGTGAACTTGT i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4263205 45 + 7922563 CCAAGTCCTACTTTGCTTTCTGATTTCCTGGGAGGGTAAATTTGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33128958 44 - 38964690 CCAAGTCCC-CCTTGGTTTCTCAGTTCTTAGGAAGTTAAATTTGT i canFam3.chr26 C 0 I 494 s dasNov3.JH568189 800854 45 - 1116856 TCCAGTCCCACTTCACTTTCTGTTTTCCTGGAAGGGTGCATTTAT i dasNov3.JH568189 I 5 C 0 e mm10.chr5 124785336 550 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I a score=152528.000000 s hg38.chr12_KI270834v1_alt 32876 16 + 119498 AAT--ACACACCCCTTTC s panTro5.chr12 127319182 16 + 137163284 AAT--ACACACCCCTTTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125670020 16 + 135337776 AAT--ACACACCCCTTTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8183396 16 - 8369578 AAT--ACACACCCCTTTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97831257 16 + 106955855 AAT--ACACACCCCTTTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123955667 16 + 133663169 AAT--ACACACCCCTTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128203165 16 + 137757926 AAT--ACACACCCCTTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10603237 16 - 16319837 AAT--ACACACCCCTTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12225512 16 + 20526591 AAT--ACTCACCCCTTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119198351 16 + 128539186 AAT--ACACACCCCTTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 511620 16 + 6255621 AAT--ACACACCCCTTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4573946 16 - 8658521 AAT--ACACACCCCTTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114779595 16 + 124281992 CAT--ATACACTCCTTTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 422132 16 - 9212255 CCT--ACACACCCCTTTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2837437 18 + 4466143 CCTACACACACCCCTTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1539291 16 + 5364348 CCT--ACACACCCCTTTC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9438460 16 - 31815103 CCT--AAACACCCTCGTA i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4263250 16 + 7922563 CCT--CAAGAGTCCCTTA i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 800899 16 - 1116856 CCT--AAATACCCTTTTA i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124785336 550 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e canFam3.chr26 33129002 494 - 38964690 I a score=2016125.000000 s hg38.chr12_KI270834v1_alt 32892 161 + 119498 G-ACTCAGCGTGTTTTTACTGACTTTATTGCAGACTTAGTTAAGATATTTTAGAATGCAAA---ATA-GCAACCCGCTTGTGCATCAGATGGTGAATAGGTTCATTTGTGAAATGAGAATTTCACAAACTATCTTAT-----------AAGGATATTTTGAAAATGAA---TGT---AAGTCA s panTro5.chr12 127319198 161 + 137163284 G-ACTCAGCGTGTTTTTACTGACTTTATTGCAGACTTAGTTAAGATATTTTAGAATGCAAA---ATA-GCAACCCGCTTGTGCATCAGATGGTGAATAGGTTCATTTGTGAAATGAGAATTTCACAAGCTATCTTAT-----------AAGGATATTTTGAAAATGAA---TGT---AAGTCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125670036 161 + 135337776 G-ACTCAGCGTGTTTTTACTGACTTTATTGCAGACTTAGTTAAGATATTTTAGAATGCAAA---ATA-GCAACCCGCTTGTGCATCAGATGGTGAATAGGTTCATTTGTGAAATGAGAATTTCACAAGCTATCTTAT-----------AAGGATATTTTGAAAATGAA---TGT---AAGTCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8183412 161 - 8369578 A-ACTCAGCGTGTTTTTACTGACTTTATTGCAGACTTAGTTAAGATATTTTAGAATGCAGA---ATA-GCAACCCGCTTGTGCATCAGATGGTGAATAGGTTCACTTGTGAAATGAGAGTTTCACAAACTATCTTAT-----------AAGGATATTTTGAAAATGAA---TGT---AAGTCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97831273 161 + 106955855 G-ACTCGGCGTGTTTTTGCTGACTTTATTGCAGACTTAGTTAAGATATTTTAGAATGCAAA---ATA-GCAACCCGCTTGTGCATCAGATGGTGAATAGGTTCATTTGTGAAATGAGAATTTCACAAACTATCTTAT-----------AAGGATATTTTGAAAATGAA---TGT---AAGTCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123955683 162 + 133663169 G-ACTCAGGGTGTTTTTACTGACTTTATTGCAGACTCAGTTAAGATATTTTAGAATGCAAA---ATA-GCAACCCGCTTGTGCATCAGATGGTGAATAGGTTCATTTGTGAAATGAGAGTTTCACAAACTATCTTAT-----------GAGGATATTGTGAAAATGAA---CGTG--AAGTCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128203181 162 + 137757926 G-ACTCAGGGTGTTTTTACTGACTTTATTGCAGACTCAGTTAAGATATTTTAGAATGCAAA---ATA-GCAACCCGCTTGTGCATCAGATGGTGAATAGGTTCATTTGTGAAATGAGAGTTTCACAAACTATCTTAT-----------GAGGATATTGTGAAAATGAA---CGTG--AAGTCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10603253 162 - 16319837 G-ACTCAGGGTGTTTTTACTGACTTTATTGCAGACTCAGTTAAGATATTTTAGAATGCAAA---ATA-GCAACCCGCTTGTGCATCAGATGGTGAATAGGTTCATTTGTGAAATGAGAGTTTCACAAACTATCTTAT-----------GAGGATATTGTGAAAATGAA---CGTG--AAGTCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12225528 162 + 20526591 G-ACTCAGGGTGTGTTTACTGACTTTATTGCAGACTCAGTTAAGATATTTTAGAATGAAAA---ATA-GCAACCCGCTTGTACATCAGACGGTGAATAGGTTCATTGGTGAAATGAGAGTTTCACAAACTATCTTAT-----------AAGGATATTGTGAAAATGAA---CGTG--AAGTCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119198367 162 + 128539186 G-ACTCAGGGTGTTTTTACTGACTTTATTGCAGACTCAGTTAAGATATTTTAGAATGCAAA---ATA-GCAACCCGCTTGTGCATCAGATGGTGAATAGGTTCATTTGTGAAATGAGAGTTTCACAAACTATCTTAT-----------AAGGATATTGTGAAAATGAA---CGTG--AAGTCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 511636 162 + 6255621 G-ACTCAGGGTGTTTTTACTGACTTTATTGCAGACTCAGTTAAGATATTTTAGAATGCAAA---ATA-GCAACCCGCTTGTGCATCAGATGGTGAATAGGTTCATTTGTGAAATGAGAGTTTCACAAACTATCTTAT-----------AAGGATATTGTGAGAATGAA---CATG--AAGTCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4573962 161 - 8658521 G-ACTCAGCGTGTTTTTACTGACTTCATTGCAGACTCAGTTAAGATATTTTAGAATGCAAA---ATA-GCAACCCGCTTGTGCATCAGATGGTGAATAGGTTCATTTGTGAAATGAGAATTTCACAAACTATCTTAT-----------AAGGATATTGTGAAAATGAA---CG-G--AAGTCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114779611 155 + 124281992 G-ACTCGGCATGTGCTTACTGACTTGATTGCTGACTTAGTTAAGATATTTTAGAATGCGAA---ATA-GTGACCCATTTGTACATCATATGGTGAATAGGTGCATTTGTTAAATCAGAATTTCACAAACTATCTT-----------------AGACTTGGAAAATGAA---AGT---AAGTCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 422148 161 - 9212255 G-ACTCAGCATATGCTTACTGACTTTATTGCTGACTTAGTTAAGGTATTTTAGAATGCGAA---ATA-GTGACACATTTGTGCATCATGTGGTGAATAGGTTCATTTGTGAAATTAGAATTCCATAAACTGTCTTAT-----------AAGGAGACTTTGAAAACGAA---AGT---AAGTCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2837455 172 + 4466143 G-ACTCAGCATGTGCTTACTGACTTTACTGCTGACTTAGTGAAGATATTTTAGAATGTGAA---ATA-GTGACCCATTTGTGCATCATATGGTGAATAGGTTCATTTGTGAAATTAGAATTTCACGAACTATCTTATAGTCTCCTTGAAAGGAGACTTTGAAAATGAA---AGT---AAGTCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1539307 161 + 5364348 G-ACTCAGTGTGTGCTTACTGACTTTATTGCTGACTTAGTTAAGATATTTTAGAATGCGAA---ATA-GTGACCCATTTGTGCATCAAATGGTGAATAGGTTCATTTGTGAAATTAGAATTTCACAAACTATCTTAT-----------AAGGAGACTTTGAAAATGAA---AGT---AAGTCA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9438476 160 - 31815103 ACACTCAGAGTGTCTTTGCTTGTTTCACTGCTGAGTTAGTTAGCAGATTTTAGAAAGCAAA---AGA-GCAACCCTTTGGTGTGTCAGATGGTG-TTAGGTTGGTTTGTGAAATGAGAATTTCACAAACTACCTTGT-----------AAGGATATTTTGA-AATGAA---TGT---AAGTCA i micMur3.chr21 C 0 I 1091 s otoGar3.GL873618 4263266 161 + 7922563 ATACTCAGATTATCTTTACTTATTTCATTGCTGATTTAGTTAACCTATTTTAGAATGCTAA---ATA-GCAACTCTTTCCTATGTCAGACAGTG-AATGGTTGATTTGTGAAATGAGAATTTGATGAACCATCTTGT-----------AAGGATATTTTGATAGTGAA---CTT---AAGTCA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33129496 158 - 38964690 G-ACTCAGAGCATCTCTACTTGTTTCATTGCTGATTT------GCTATTTTAGAAGGCAAA---ACA-ATGACCCTTTCGTGCATTAGACTGTGACTAGGTTTATCTGTGAGAGGAGTATATCACAAACAACCTTAT-----------AAGGATATTTTGAAAATTAA---TTTGTTAAGTTG i canFam3.chr26 I 494 C 0 s dasNov3.JH568189 800915 164 - 1116856 A-GCTCAGAGTGCCTCTACTTGTTTCATTGCTGATTTAGTCAGTATATTTCAGAATACAAAGGGATATATAACCCCTTTGCATATCAGACTGTGACTAGGT----TTGTGAAATGAAAATTTCGCAAAACATTCTAT-----------GAACATATTTTGAAAAATAAGTTCGT---AGGTCA i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124785336 550 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I a score=1953470.000000 s hg38.chr12_KI270834v1_alt 33053 175 + 119498 TAGTTTCTTGGGGTCCAAATTGCTTCCTTAAAGTAAGTCAGGA--TTCA-C-CTTATGCAGTACTGCTGTGGTTTCGCAGTGGCCAGAAAACGAATGTCACCTCCCCGGGTGCCTTATAATCGCTAGCCCTTCGGGGGCAATTCTTCACGAAGGAAAAAGTGATCGTACACTCCCACAT s panTro5.chr12 127319359 175 + 137163284 TAGTTTCTTGGGGTCCAAATTGCTTCCTTAAAGTAAGTCAGGA--TTCA-C-CTTATGCAGTACTGCTGTGGTTTCGCAGTGGCCAGAAAAAGAATGTCACCTCCCCAGGTGCCTTATAATCTCTAGCCCTTCAGGGGCAATTCTTCACGAAGGAAAAAGTGATTGTACACTCCCACAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125670197 175 + 135337776 TAGTTTCTTGGGGTCCAAATTGCTTCCTTAAAGTAAGTCAGGA--TTCA-C-CTTATGCAGTACTGCTGTGGTTTCGCAGTGGCCAGAAAAAGAATGTCACCTCCCCAGGTGCCTTATAATCTCTAGCCCTTCAGGGGCAATTCTTCACGAAGGAAAAAGTGATTGTACACTCCCACAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8183573 175 - 8369578 TAGTTTCTTGGGGTCCAAATTGCTTCCTTAAAGTAAGTCAGGA--TTCA-C-CTTATGCAGTACTGCTGTGGTTTCGCAGTGGCCAGAAAAAGAATGTCACCTCCCCGGGTGCCTTATAATCTCTAGCCCTTCAGGGGTAATTCTTCACCAAGGAAAAAGTGATCGTACACTCCCACAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97831434 175 + 106955855 TAGTTTCTTGGTGTCCAAATTGCTTCCTTAAAGTAAGTCAGGA--TTCA-C-CTTATGCAGCACTGCTGTGGTTTCACAGTGGCCAGAAAAAGAATGTCACCTTCCCTGGTGCCTTATAATCTCTAGCTCTTCAGGGGCAATTCTTCACGAAGGAAAAAGTGATCGTACACTGCCACAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123955845 175 + 133663169 TAGTTTTTTGGTGTCTAAATTGCTTCCTTAAAGTAATTCAGGA--TTCA-C-CTTATGCAGCACTGCTGTGGTTTCGCAGTGGCCAGAAAAAGAATGTCACCTCCCTGGGTGCCTTATAATCTCTAGCCCTTCAGGGGCAATTCTTCATGCAGGAAACAGTGATCGTACACTCCCACAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128203343 175 + 137757926 TAGTTTTTTGGTGTCTAAATTGCTTCCTTAAAGTAATTCAGGA--TTCA-C-CTTATGCAGCACTGCTGTGGTTTCGCAGTGGCCAGAAAAAGAATGTCACCTCCCTGGGTGCCTTATAATCTCTAGCCCTTCAGGGGCAATTCTTCATGCAGGAAACAGTGATCGTACACTCCCACAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10603415 175 - 16319837 TAGTTTTTTGGTGTCTAAATTGCTTCCTTAAAGTAATTCAGGA--TTCA-C-CTTATGCAGCACTGCTGTGGTTTCGCAGTGGCCAGAAAAAGAATGTCACCTCCCTGGGTGCCTTATAATCTCTAGCCCTTCAGGGGCAATTCTTCATGCAGGAAACAGTGATCGTACACTCCGACAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12225690 175 + 20526591 TAGTTTTTTGGTGTCTAAATTGCTTCCTTAAAGTAATTCAGGA--TTCA-C-CTTATGCAGCACTGCTGTGGTTTTGCAGTGGCCAGAAAAAGAATGTCACCTCCCCGGGTGCCTTATAATCTCTAGCCCTTCAGGGGCAATTCTTCATGCAGGAAACAGTGATCGTACACTCCGACAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119198529 175 + 128539186 GAGTTTTTTGGTGTCTAAATTGCTTCCTTACAGTAATTCAGGA--TTCA-C-CTTATGCAGCACTGCTGTGGTTTCACAGTGGCCAGAAAAAGAATGTCACCTCCCCGGGTGCCTTATAATCTCTAGCCCTTCAGGGACAATTCTTCATGAAGGAAACAGTGATCGTACACTCCCACAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 511798 175 + 6255621 TAGTTTTTTGGTGTCTAAATTGCTTCCTTACAGTAATTCAGGA--TTCA-C-CTTATGCAGCACTGCTGTGGTTTCGCAGTGGCCAGAAAAAGAATGTCACCTCCCCGGGTGCCTTATAATCTCTAGCCCTTCAGGGGCAATTCTTCATGCAGGAAACAGTGATCATACACTCCCACAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4574123 175 - 8658521 TAGTTTTTTGGTGTCTAAATTGCTTCCTTAAAGTAATTCAGGA--TTCA-C-TTTATGCAGCACTGTTGTGGTTTCGCAGTGGCCAGAAAAAGAATGTCACCTCCCCGGGTGCCTTATAATCTCTAGCCCTTCAGGGGCAATTCTTCATGAAGGAAAAAGTGATTGTACACTCCCACAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114779766 175 + 124281992 TAGTTTCTTGGTGTCTGGATTGCTTCCTTAAAGTAAGTCAGGA--TTCA-C-ATTATGCAGCACTGCTGTGGTTTCAGAGTGGCCAGGACAAGAATGTCACTTCCCTGGGTGCCTTATAATCTCCAGCCCTGCAGAGGCAGTTCTTCGTGACGGAAAAAGTGATTGTACGTTCCCACAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 422309 175 - 9212255 TAGTTTCTTGGTGTCCGGATTGCTTCCTTAAAGTAAGTCAGGA--TTCA-C-ATTATGCAGCACTGCTGTGGTTTCAGAGTGGCCAGGACAAGAATGTCACTTCTCTGGGTGCCTTATAATCTCCAGCCCTGCAGAGGCAGTTCTTTGTGAAGGAAAAAGTGATTGTACATTCTCGCAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2837627 175 + 4466143 TAGTTTCTTGGTGTCCGGATTGCTTCCTTAAAGTAAGTCAGGA--TTCA-C-ATTATGCAGCACTGCTGTGGTTTCAGAGTGGCCAGGACAAGAGTGTCACTTCCCTGGGTGCCTTACAATCTCCAGCCCTGCAGAGGCAGTTCTTCGTGAAGGAAAAAGTGATTGTACATTCTCACAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1539468 175 + 5364348 TAATTTCTCGGTGTCCGGATTGCTTCCTTACAGTAAGTCAGGA--TTCA-C-GTTATGCAGCACTGCTGTGGTTTCAGAGTGGCCAGGACAAGAATGTCACTTCCCTGGGTGCCTTATAATCTCCAGCCCTGCAGAGGCAGTTCTTCCTGAAGGAAAAAGTGATTGTACATTCCCACAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4263427 145 + 7922563 TATTTTTTCAGTGTTGAGATTGCTTCTTTCCAGTAAGTCAGCA-------------------ACCTTTGTGGTATCTGAGTGGTTAGAAAAAG--TGTCACTTCCTTAGATTCTT----ATCACCAGCCCTGCAGAGGCAATTTTGCTTGGAGGAACGTGTGA---------CTTATGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33129654 159 - 38964690 TATTTTCTTGGTGTTCAGGTTGCTCCTTCAAAGTAAGTCAGGACACTCATC-ATTATGCAACACTGTTATAGTATCAGAGTGGCCAGAAACAGAGTGTTATCTCACCAAAGACTTTGTTATCAGCAGCCCAGTGGGAGCAATGCTGCTCCAAGGGAAAGG------------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 801079 166 - 1116856 TATGCATTTGGTGTGCTGATTGCTCCATTTAAGTCAGCCAGGA--CCCA-TGATTAGGCAAAACTGCTGTGGTATTGGAGGG--CAGAA-GAGAGTGTCTTCTCCCCAGATGCCTT------CCCAAACCTGCAGGCACAATTCTGCTAGAAGGAAAAGG-GCTCTCACACTCATATAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438636 1091 - 31815103 I e mm10.chr5 124785336 550 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I a score=151020.000000 s hg38.chr12_KI270834v1_alt 33228 14 + 119498 TGAAGATCGTAAAG s panTro5.chr12 127319534 14 + 137163284 TGAAGATCATAAAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125670372 14 + 135337776 TGAAGATCATAAAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8183748 14 - 8369578 TGAAGATCATAAAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97831609 14 + 106955855 TGAAGATCATAAAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123956020 14 + 133663169 TGAAGACCATAAAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128203518 14 + 137757926 TGAAGACCATAAAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10603590 14 - 16319837 TGAAGACCATAAAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12225865 14 + 20526591 TGAAGATCATAAAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119198704 14 + 128539186 TGAAGATCATAAAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 511973 14 + 6255621 TGAAGATCATAAAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4574298 14 - 8658521 TGAAGATCATAAAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114779941 14 + 124281992 AGAAGATCATAAAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 422484 14 - 9212255 AGAAGATCATAAAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2837802 14 + 4466143 AGAAGATCGTAAAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1539643 14 + 5364348 AGAAGATCATAAAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4263572 14 + 7922563 AGAACATCACAAAG i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9438636 1091 - 31815103 I e mm10.chr5 124785336 550 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 801245 0 - 1116856 C e canFam3.chr26 33129813 0 - 38964690 C a score=2803755.000000 s hg38.chr12_KI270834v1_alt 33242 299 + 119498 GAgccaggcatggtggctcacgcctg---taatcccagcactttgggaggcctgggtgggaggatcccatagtccaggattttgagaacagcctgggcaacataatgagactccgtctccacatt---aaaaaaaaattagctgggtgtggtgatgtgcacctgtagtacagctactcaggaggctaaggagggaggattgcttgagcccaagaatttgaggctgcagtgggctaggattgtgccactgcacaccagcctgggcaacagagtgagaccttctctct--------------------aaaaaaaaaaaaaaaGGAG s panTro5.chr12 127319548 313 + 137163284 GAgccaggcatggtggctcacgcctg---taatcccagcactttgggaggcctgggtgggaggatcgcatagtccaggattttgagaacagcctgggcaacataatgagactccgtctccacatt---aaaaaaaaattagctgggtgtggtgacgtgcacctgtagtacagctactcaggaggctaaggagggaggattgcttgagcccaagaatttgaggctgcagtgggctaggattgtgccactgcacaccagcctgggcaacagagtgagaccttctctct------aaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125670386 300 + 135337776 GAgccaggcatggtggctcacgcctg---taatcccagcactttgggaggcctgggtgggaggatcgcatagtccaggattttgagaacagcctgggcaacataatgagactccgtctccacatt---aaaaaaaaattagctgggtgtggtgacgtgcacctgtagtacagctactcaggaggctaaggagggaggattgcttgagcccaagaatttgaggctgcagtgggctaggattgtgccactgcacaccagcctgggcaacagagtgagaccttctctct-------------------aaaaaaaaaaaaaaaaGGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8183762 311 - 8369578 GAgccaggcacggtggctcacgcctg---taatcccagcactttgggaggcctgggtgggaggatcgcatagtccaggattttgagaacagcctgggcaacataatgagactccgtctccacatt---aaaaaaaaattagctgggtgtggtgacgtgcacctgtagtacagctactcaggaggctaaggagggaggattgcttgagcccaagaatttgaggctgcagtgggctaggattgtgccactgcacaccagcctgggcaacagagtgagaccttctctct--------gaaaaaaaaagaaaaaaaaaaaaaaaaGGAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97831623 321 + 106955855 GAgccaggcatggtggctcacgcctg---taatcccagcaccttgggaggcctgggtgggaggaacgtataggccaggattttgagaacagcctgggcaacataatgagactctgtctccacatttaaaaaaaaaaaagagctgggtgtggtgacgtgcacctgtagtacagctactcaggaggctaagga-ggaggagtgcttgagcccaggattttgaggctgcagtgggctaggattgtgccactgcacaccagcctgggcaacagagtgagaccttctctctctaaaaaaaaaaaaaaaaaaaaaaaagagaaaGAGAGAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123956034 309 + 133663169 GAgccaggcatggtggctcatgcctg---taatcccagcgctttgggaggccagggtgagaggatcgcctagtccaggattttgagaacagcctgggcaacataatgagactccgtccccacatt---aaaaaaaaattagctgtgtgtggtgacgtgcacctgtagtacagctactcaggaggctaaggagggaggattgcttgagttcaagagtttgagtctgcagtgggctaggattgtgccactgcacaccagcctgggcaacagagtgagaccttctctct----------aaaaaaaaaaaaaaaaaaaaGCGAGAGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128203532 311 + 137757926 GAgccaggcatggtggctcatgcctg---taatcccagcgctttgggaggccagggtgagaggatcgcctagtccaggattttgagaacagcctgggcaacataatgagactccgtctccacatt-aaaaaaaaaaattagctgtgtgtggtaacgtgcacctgtagtacagctactcaggaggctaaggagggaggattgcttgagttcaagagtttgagtctgcagtgggctaggattgtgccactgcacaccagcctgggcaacagagtgagaccttctctct----------aaaaaaaaaaaaaaaaaaaaGAGAGAGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10603604 310 - 16319837 GAgccaggcatggtggctcatgcctg---taatcccagcgctttgggaggccagggtgagaggatcgcctagtccaggattttgagaacagcctgggcaacataatgagactccgtctccacaat--aaaaaaaaaattagctgtgtgtggtgacgtgcacctgtagtacagctactcaggaggctaaggagggaggattgcttgagttcaagagtttgagtctgcagtgggctaggattgagccactgcacaccagcctgggcaacagagtgagaccttctctct----------aaaaaaaaaaaaaaaaGAGAGAGAGAGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12225879 309 + 20526591 GAgccaggcatggtggctcatgcctg---taatcccagcgctttgggaggccagggtgagaggatcgcctagtccaggattttgagaacagcctgggcaacataatgagactccgtctccacatt--aaaaaaaaaattagctgtgtgtggtgacgtgcacctgtagtacagctactcaggaggctaaggagggaggattgcttgagttcaagagtttgagtctgcagtgggctaggattgtgccactgcacaccagcctgggcaacagagtgagaccttctctct----------aaaaaaaaaaaaaaaa-aaaGAGAGAGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119198718 307 + 128539186 GAgccaggcatggtggctcatgcctg---tgatctcagcgctttgggaggccagggtgagaggatcgcctagtccaggattttgagaacagcctgggcaacataatgagactccatctccacatt--aaaaaaaaaattagctgtgtgtggtgacgtgcacctgtagtacagctactcaggaggctaaggagggaggattgcttgagttcaagagtttgagtctgcagtgggctaggattgtgccactgcacaccagcctgggcaacagagtgagaccttctctct----------aaaaaaaaaataaa---aGAGAGAGAGAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 511987 313 + 6255621 GAgccaggcatggtggctcatgcctgatttaatcccagcactttgggaggccagggtgagaggatcgcctagtctaggattttgagaacagcctgggcaacataatgagactccgtctccacatt--aaaaaaaaaattagctgtgtgtggtgacgtgcacttgtagtacagctactcaggaggctaaggagggaggattgcttgagttcaagagtttgagtctgcagtgggctaggattgtgccactgcacaccagcctgggcaacagagtgagaccttctctct----------aaaaaaaaaaaaaaaaGAGAGAGAGAGAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4574312 308 - 8658521 GAgccaggcatggtggctcatgcctg---tattcccagcgctttgggaggccggggtgagaggatcacttaggccaggattttgagaacagcctgggcaatataatgagactccgtctccacatt--aaaaaaaaaattagctgtgtgtggtgacgtgcacctgtagtacagctactcaggaggctaaggagggaggattgcttgagttcaagagtttaagtctgcagtgggctaggattgtgccactgcacaccagcctgggcaacagagtgagaccttctctct----------aaaaaaaaaagagag--agagagagagag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114779955 295 + 124281992 GAgccgggcgtagtggctcatgcctg---taatcccagcactttgggaggccaaggtgggaggatgacacaggccaggattttgagaatagcctgggcaacataatgagactctgtctttacgtt---aaaaaaaagttagctgggtgtggtgatgtgcacctgtagtatagctactcaggaggctaaggagggaggattgcctgaacccaggagtttgaggctgcagtgggcgaggattgtgtcatggcacactagtctgggcagcagagtgagaccttctctct------------------------ctaaaaaaaaGAGAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 422498 295 - 9212255 GAgccgggcatggtggctcatgcctg---taatcccagcactttgggaggccaaggtgggaggctgacataggccaggattttgagaacagcctgggcaacataatgagactctgtctttacgtt---aaaaaaaagtgagctgggtgtggtgatgtgcacctgtggtatagctactcaggaggctgaggagggaggatagcttgagcccaggagtttgaggctgcagtgggcgaggattgtgccactgcaaaccagtctgggcagcagagtgagaccttctctct------------------------aaaaaaaaaaGAGAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2837816 297 + 4466143 GAgccgggcgtggtggctcatgcctg---taatcccagcactttgggaggccaaggtgggaggatgacataggccaggattttgagaacagcctgggcaacataatgagactctgtctttgcgtt---aaaaaaaagttagctgagtgtggtgacgtgcacctgtggtatagctactcaggaggctaaggagggaggattgcttgagcccaggagttagaggctgcagtgggtgaggattgtgccactgcacagcagtctgggcagcagagtgagaccttctctct----------------------aaaaaaaaaaaaGAGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1539657 298 + 5364348 GAgctgggcgtggtggctcatgcttg---taat-ccagcactttgggaggccaaggtgggaggatgacataggccaggattttgagaacagcctgagcaacataatgagactctgtctttacgtt---aaaaaaaagttagctgggtgtggtgatgtgcacctgtagtatagctactcaggaggctaaggagggaggattgcttgagcccaggagtttgaggctgcagtgggtgaggactgtgccactgcataccagtctgggcaacagagtgagaccttctctct--------------------aaaaaaaaaaaaaaGAGAG i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33129813 63 - 38964690 --------------------------------------------------------------AATCTCACACTCCAGAAT-------ACAG--------------------------------------------------------------------------------GATATTCTGGAGACTTGTGAA------------------------------TTGTAGTG-----------------------------------------------CCTATCCTT----------AAA-------------------------- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9438636 1091 - 31815103 I e mm10.chr5 124785336 550 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e dasNov3.JH568189 801245 0 - 1116856 C e otoGar3.GL873618 4263586 0 + 7922563 C a score=53485.000000 s hg38.chr12_KI270834v1_alt 33541 6 + 119498 AGTATG s panTro5.chr12 127319861 6 + 137163284 AGTATG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125670686 6 + 135337776 AGTATG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8184073 6 - 8369578 AGTATG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97831944 6 + 106955855 AGTATA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123956343 6 + 133663169 AGTATA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128203843 6 + 137757926 AGTATA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10603914 6 - 16319837 AGTATA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12226188 6 + 20526591 AGTGTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119199025 6 + 128539186 AGTATG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 512300 6 + 6255621 AGTATA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4574620 6 - 8658521 agTATG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114780250 6 + 124281992 AGTGTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 422793 6 - 9212255 AGTGTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2838113 6 + 4466143 AGTGTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1539955 6 + 5364348 TGTGTA i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 801245 6 - 1116856 AGAATA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438636 1091 - 31815103 I e mm10.chr5 124785336 550 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e canFam3.chr26 33129876 0 - 38964690 C e otoGar3.GL873618 4263586 0 + 7922563 C a score=86608.000000 s hg38.chr12_KI270834v1_alt 33547 8 + 119498 TCATAAAA s panTro5.chr12 127319867 8 + 137163284 TCATAAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125670692 8 + 135337776 TCATAAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8184079 8 - 8369578 TCATAAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97831950 8 + 106955855 TCATAAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123956349 8 + 133663169 TCATAACA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128203849 8 + 137757926 TCATAACA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10603920 8 - 16319837 TCATAACA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12226194 8 + 20526591 TCATAACA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119199031 8 + 128539186 TCATAACA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 512306 8 + 6255621 TCATAACA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4574626 8 - 8658521 TCATAAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114780256 8 + 124281992 TCATAAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 422799 8 - 9212255 TCATAAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2838119 8 + 4466143 TCATAAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1539961 8 + 5364348 TCATAAAA i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124785886 8 + 151834684 TCGTAAAG i mm10.chr5 I 550 C 0 s dasNov3.JH568189 801251 8 - 1116856 TCAGAGAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438636 1091 - 31815103 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e canFam3.chr26 33129876 0 - 38964690 C e otoGar3.GL873618 4263586 0 + 7922563 C a score=2050108.000000 s hg38.chr12_KI270834v1_alt 33555 183 + 119498 GCCTGCAGTGAATTGAAAGCCTTCTACTGAAAGTGGAT-TCCT-GACTCCTCACTTCTCTTCTAAGCAAT----AACTAGATTCCAGAAAGACCTCCGTGGATGCTGATAGCCCGGC--AAAAA----------TCTAAATCAAGCC-AA--AGTTTCTGTGACTTAAACATTTCTAGG-CAGTCTATAA---AATCTAAAGAGTAAG s panTro5.chr12 127319875 183 + 137163284 GCCTGCAGTGAATTGAAAGCCTTCTACTGAAAGTGGAT-TCCT-GACTCCTCACTTCTCTTCTAAGCAAT----AACTAGATTCCAGAAAGACCTCCGTGGATGCTGATAGCCCGGC--AAAAA----------TCTAAATCAAGCC-AA--AGTTTCTGTGACTTAAACATTTCTAGG-CAGTCTATAA---AATCTAAAGAGTAAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125670700 183 + 135337776 GCCTGCAGTGAATTGAAAGCCTTCTACTGAAAGTGGAT-TCCT-GACTCCTCACTTCTCTTCTAAGCAAT----AACTAGATTCCAGAAAGACCTCCGTGGATGCTGATAGCCCGGC--AAAAA----------TCTAAATCAAGCC-AA--AGTTTCTGTGACTTAAACATTTCTAGG-CAGTCTATAA---AATCTAAAGAGTAAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8184087 182 - 8369578 GCCTGCAGTGAATTGAAAGCCTTC-ACTGAAAGTGGAT-TCCT-GACTCCTCACTTCTCTTCTAAGCAAT----AACTAGATTCCAGAAAGACCTCCATGGATGCTGATAGCCCGGC--AAAAA----------TCTAAATCAAGCC-AA--AGTTTTTGTGACTTAAACATTTCTAGG-CAGTCTATAA---AATCTAAACAGTAAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97831958 183 + 106955855 GCCTGCAGTGAATTGAAAGCCTTCTACTGAAAGTGGAT-TCCT-GACTCCTCATTTCTCTCCTGAGCAGT----AA-TAGATACCAGAAAGACCTCTGTGGATGCTGATAGCCCAGC--AAAAG----------TCTAAATCAAGCC-AA-TAATTTTTGTGACTTAAACATTTCTAGG-CAGTCTGTAA---AATCTAAAGAATAAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123956357 177 + 133663169 GCCTGCAGTGAATTGAAAGCCTTCTACTGAAAGTGGAT-TCCT-GACTCCTGGCTTCTCTCCTAAGCAAT----AACTAGATTCCAGAAAGTCCTCCGTGGATGCTGACAGTCTGGC--AAAAA----------TCTAAATCAAGCC-AA-TAATTTTTGTGACTTAA-------TAGG-CAGTCTATAA---AATCTAAAGAGTAAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128203857 177 + 137757926 GCCTGCAGTGAATTGAAAGCCTTCTACTGAAAGTGGAT-TCCT-GACTCCTCGCTTCTCTCCTAAGCAAT----AACTAGATTCCAGAAAGTCCTCCGTGGATGCTGACAGTCTGGC--AAAAA----------TCTAAATCAAGCC-AA-TAATTTTTGTGACTTAA-------TAGG-CAGTCTATAA---AATCTAAAGAGTAAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10603928 177 - 16319837 GCCTGCAGTGAATTGAAAGCCTTCTACTGAAAGTGGCT-TCCT-GACTCCTCGCTTCTCTCCTAAGCAAT----AACTAGATTCCAGAAAGACCTCCGTGGATGCTGACAGTCTGGC--AAAAA----------TCTAAATCAAGCC-AA-TAATTTTTGTGACTTAA-------TAGG-CAGTCTATAA---AATCTAAAGAGTAAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12226202 177 + 20526591 GCCTGCAGTGAATTGAAAGCCTTCTACTGAAAGTGGAT-TCCT-GACTCCTCGCTTCTCTCCTAAGCAAT----AACTAGATTCCAGAAAGACCTCCGTGGATGCTGACAGTCTGGC--AAAAA----------TCTAAATCAAGCC-AA-TAATTTTTGTGACTTAA-------TAGG-CAGTCTATAA---AATCTAAAGAGTAAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119199039 177 + 128539186 GCCTGCAGTGAATTGAAAGCCTTCTACTGAAAGTGAAT-TCCT-GACTCCTCGCTTCTCTCCTAAGCAAT----AACTAGATTCCAGAAAGACCTCCGTGGTTGCTGACAGTCTGGC--AAAAA----------TCTAAATCAAGCC-AA-TAATTTTTGTGACTTAA-------TAGG-CAGTCTATAA---AATCTAAAGAGTAAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 512314 177 + 6255621 GCCTGCAGTGAATTGAAAGCCTTCTACTGAAAGTGGAT-GCCT-GACTCCTCGCTTCTCTCCTAAGCAAT----AACTAGATTCCAGAAAGACCTCCGTGGATGCTGACAGTCTGGC--AAAAA----------TCTAAATCAAGCC-AA-TAATTTTTGTGACTTAA-------TAGG-CAGTCTATAA---AATCTAAAGAGTAAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4574634 177 - 8658521 GCCTGCAGTGAATTGAAAGCCTTCTACTGAAAGTGGAT-TCCT-GACTCCTCGCTTCTCTCCTAAGCAAT----AACTAGATTCCAGAAACACCTCCGTGGATGCTGACAGTCTGGC--AAAAA----------TCTAAATCAAGCT-AA-TAATTTTTGTGACTTAA-------TAGG-CAGTCTATAA---AATCTAAAGAGTAAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114780264 187 + 124281992 GCCTCCAGTGGATTGAAAGCCTTCTATCCAAAGTGGGT-TCCT-GACTCTTCACTTCTCCCCGAAGCGATAACCAACTAGATTCCAGAAAGACCT---TGGATGCTGATAGCCCGGCAAAAAAA----------TCTAGATCAAGCC-TA-CAGTTTTCATGACTTAAACATTTCTAGG-TAGTCTATGA---AATCTAAAGAGTAAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 422807 186 - 9212255 GCCTGCAGTGGATTGAAAGCCTTCTACCCAAAGTGGGT-TCCT-GACTCTTCACTTCTCCCCTGAGCAGTAACTAACTAGATTCCAGAAAGGCCT---TGGATGCTGATAGCCTGGC-AAAAAA----------TCTAAATCAAGCC-TA-CAGTTTTTGTGACTTAAACATTTCTAGG-TAGTCTATGA---AATCTAAAGAGTAAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2838127 186 + 4466143 GTCTACAGTGGATTGAAAGCCTTCTATCCAAAGTGGGT-TCCT-GACTCTTCACTTCTCCCCTAAGCAGTAACTAACTAGATTCCAGAAAGACCT---TGGATGCTGATAGCCCGGC-AAAAAA----------TCTAAATCAAATC-TA-CAGTTTTTGTGACTTAAACATTTCTAGG-TAGTCTATGA---AAGCTAAAGAATAAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1539969 182 + 5364348 GCCTGCAGTGGATTGAAAGCCTTCTACCGAAAGTGGGT-TCCT-GACTCCTCACTTCTCCCCTAAGCAAT----AACTAGATTCCAGAAAGACCT---TGGATGCTGATAGCCTGGC-AAAAAA----------TCTAAATCAAGCC-CA-CAGTTTTTGTGACTTACACATTTCCAGG-TAGTCTATGA---AATCTAAAGAGTAAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4263586 174 + 7922563 GCCTGCAGGGGACTGACAGCTGTGTACTGACAGTGGATCTCCT-GAC---------CTCTCGGGAGCAAT----AACTAGATTGCAGAAAGACTTCAGCGGATGCCAACAGTCCAGC--AAAAA----------TCTAAAGCAAGCCTTA-TAATATTTGTGGCTTTCATATTTGTAGATTTATTTATAC---AGTCTGA----TGAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124785894 185 + 151834684 ACTCACTGTGTGGTGACAGTCTTCCATCTAGAGAGGATTTCCA-AACCGTTTGCTTCTCCACTTGCCAGT----GACTGGGTTCTAGAGAGACTTGGACAAATGCCAGTATTACAGG--CAAAC----------TCTAAATGGGGCC-ATGCGATCTTTGTGACTGTAGTATTT-CAGA-TTGCATAGCA---AATCTCCAGACCAgg i mm10.chr5 C 0 I 1142 s canFam3.chr26 33129876 151 - 38964690 --------------------------CTGAAATGGATT-TTCT-GACTTCTCACTTTTCTCTTAAGCAAG----AACTAGATTCCAGAAAGACTTTACTGCATGTTAA--------C--AAAAA----------TCTAAATCAAGCTTTA-TAATCTTTGTGACTTTAATATTTCTAGA-TAGTCTATAA---AATCTGCTGAGTAAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 801259 192 - 1116856 GCCTGTGGTATA-------CCTTAGACTGAAAATGGAT-TTTTGGACATCTCACTTCACTTCTAAGCAAT----AACTAGATTCCAAAAGGACCTCAGCGAATGCTAATATTCAAGC--AAAAAAATCTAAAATTCTAAATCAAGCATTA-TAATCTTTCTGACATTATCATTTCTAGA-TAGTCTATAAGATAATCTCAAGAGTAAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438636 1091 - 31815103 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I a score=1143938.000000 s hg38.chr12_KI270834v1_alt 33738 101 + 119498 TGTCTGTCATATGTTCCCATTATTTCTTCATATGTTTCATATG-------------AGAAAACCAGTCGACAGTGGCTTACTGACTC-TAAGTGGGCTGTG-CCGTGGCCAT-C-TGC s panTro5.chr12 127320058 101 + 137163284 TGTCTGTCATTTGTTCCCATTATTTCTTCATATGTTTCATATG-------------AGAAAACCAGTCGACAGTGGCTTACTGACTC-TAAGTGGGCTATG-CCGTGGCCAT-C-TGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125670883 101 + 135337776 TGTCTGTCATTTGTTCCCATTATTTCTTCATATGTTTCATATG-------------AGAAAACCAGTCGACAGTGGCTTACTGACTC-TAAGTGGGCTATG-CCGTGGCCAT-C-TGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8184269 101 - 8369578 TGTCTGTCATTTGTTCCCATTATTTCTTCATATGTTTCATATG-------------AGAAAACCAGTCGACAGTGGCTTACTGACTC-TAAGTGGGCTGTG-CCGTGGCCAT-C-TGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97832141 101 + 106955855 TATCTGTCATTTGTTCCCATTATTTCTTCATATGTTTCATAGG-------------AGAAAACCAGTCGACAGTGGCTTACTGACTC-TAAGTGGGCTGTG-CTGTAGCCAT-C-TGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123956534 101 + 133663169 TGTATGTCATTTGTTCCCGTTGTTTCTTCATATGTTTCATATG-------------AGAAAACGAGCTGACAGTGGTTTACTGACTC-TAAGTGGGCTGTA-CTGTGGCCAT-C-TGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128204034 101 + 137757926 TGTATGTCATTTGTTCCCGTTGTTTCTTCATATGTTTCATATG-------------AGAAAACGAGCTGACAGTGGTTTACTGACTC-TAAGTGGGCTGTA-CTGTGGCCAT-C-TGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10604105 101 - 16319837 TGTATGTCATTTGTTCCCGTTGTTTCTTCATATGTTTCATATG-------------AGAAAACGAGCTGACAGTGGTTTACTGACTC-TAAGTGGGCTGTA-CTGTGGCCAT-C-TGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12226379 101 + 20526591 CGTATGTCATTTGTTCCCATTGTTTCTTCATATGTTTCATGTG-------------AGAAAACCAGCTGGCAGTGGTTTACTGACCC-TAAGTGGGCTGTA-CTGCGGCCAT-C-TGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119199216 101 + 128539186 TGTATGTCATTTGTTCCCATTGTTTCTTCATATGTTTCATGTG-------------AGAAAACCAGCTGACAGTGGTTTACTGACTC-TAAGTGGGCTGTA-CTGCGGCCAT-C-TGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 512491 101 + 6255621 CGTATGTCATTTGTTCCCATTGTTTCTTCATATGTTTCATGTG-------------AGAAAACCAGCTGGCAGTGGTTTACTGACCC-TAAGTGGGCTGTA-CTGCGGCCAT-C-TGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4574811 101 - 8658521 TGTATGTCATTTGTTCCCATTGTTTCTTCATATGTTTCATATG-------------AGAAAACCAGCTGACATTGGTTTACTGACTC-TAAGTGGGCTGTA-CTGTGGCCAT-C-TGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114780451 101 + 124281992 TGACTGTCATTTGTTCCCATTATTTCTTCATATGTTTCATATG-------------AAAAAACCAGTCGACAGTGGCTTACTGACTC-TAAGTGGGCTGTG-CTGTGGCCAT-C-TGC i calJac3.chr9 C 0 I 307 s saiBol1.JH378194 422993 91 - 9212255 TGACGGTCATTTGTTCCCATTATTTCTTCATATGTTTCATATG------------AAAAAAACCAGTCGAAAGTGGCTTACTGACTCTTAAGTGGG-------------CAT-C-TGC i saiBol1.JH378194 C 0 I 312 s cebCap1.NW_016107484v1 2838313 102 + 4466143 TGACTGTCATTTGTTCCCATTATTTCTTCATATGTTTCATATG------------AAAAAAAACAGTCGACAGTGGCTTACTGACTC-TAAGTGGGCTGTG-CTGGGGCCAT-C-TGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1540151 100 + 5364348 TGACTGTCATTTGTTCCCATTATTTCTTCATACGTTTCATATG--------------AAAAACCAGTCGACAGTGGCTTCCTGACTC-TAAGTGGGCTATG-CCGTGGCCAT-C-TGC i aotNan1.NW_018491581v1 C 0 I 308 s otoGar3.GL873618 4263760 97 + 7922563 CGACTGTCATTTCTTC---TTGTTTCT--GTATGTTTCCTTTA-------------AGGAAAC-AGCGGACAGTGGCTTATGGGCTC-TCACTGGGTTCTATCTGTAGTTATCC-TGC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33130027 96 - 38964690 TGACTGTCACTTTTTC---TTATTTCT---TATGTTTCTTATG-------------AGAAAACCAATGGACAGTGGCTTACTGATTT-TAAGTGGGTTATG-CCTTGGCCAT-CTTGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 801451 115 - 1116856 TGAATGTCGTTTCTTACCGTTATTTCTGCATGTTTTTCCTATGATTACTTAGTCAAAGAAAACCAGTGGACAATGGCTTGCTAATTT-TAGGTGGGCTCTC-CTGTAGTTGTCC-TGT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438636 1091 - 31815103 I e mm10.chr5 124786079 1142 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I a score=67359.000000 s hg38.chr12_KI270834v1_alt 33839 5 + 119498 ATttc s panTro5.chr12 127320159 5 + 137163284 ATttc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125670984 5 + 135337776 ATttc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8184370 5 - 8369578 ATttc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97832242 5 + 106955855 ATttc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123956635 5 + 133663169 ATTTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128204135 5 + 137757926 ATTTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10604206 5 - 16319837 ATTTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12226480 5 + 20526591 ATttc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119199317 5 + 128539186 ATttc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 512592 5 + 6255621 ATttc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4574912 5 - 8658521 ATttc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114780859 5 + 124281992 ATTTC i calJac3.chr9 I 307 C 0 s saiBol1.JH378194 423396 5 - 9212255 ATTTC i saiBol1.JH378194 I 312 C 0 s cebCap1.NW_016107484v1 2838415 5 + 4466143 Atttc i cebCap1.NW_016107484v1 C 0 I 308 s aotNan1.NW_018491581v1 1540559 5 + 5364348 ATTTC i aotNan1.NW_018491581v1 I 308 C 0 s otoGar3.GL873618 4263857 5 + 7922563 ATTTC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33130123 5 - 38964690 CTTTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 801566 5 - 1116856 GTTAC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438636 1091 - 31815103 I e mm10.chr5 124786079 1142 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I a score=518141.000000 s hg38.chr12_KI270834v1_alt 33844 43 + 119498 attctttaattcattcattGT----AAGTTTATAGAACTATCACACA s panTro5.chr12 127320164 47 + 137163284 attctttaattcattcattGTTAGATAGTTTATAGAACTATCACACA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125670989 47 + 135337776 attctttaattcattcattGTTAGATAGTTTATAGAACTATCACACA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8184375 42 - 8369578 attctttaattcattcattGT----TAGTTTATAGAACTATCACAC- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97832247 47 + 106955855 attctttaattcattcattGTTAGATAGTTTATACAACTATCACACA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123956640 47 + 133663169 ATTTTTTAATTTATTCATTGTTAAATAGTTTATAGAACTATCACACA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128204140 47 + 137757926 ATTTTTTAATTTATTCATTGTTAAATAGTTTATAGAACTATCACACA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10604211 47 - 16319837 ATTTTTTAATTTATTCATTGTTAAATAGTTTATAGAACTATCACACA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12226485 47 + 20526591 attctttaattcattcattGTTAAATAGTTTATAGAACTATCACACA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119199322 47 + 128539186 attctttaattcattcattGTTAAATAGTTTATAGAACTATCACGCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 512597 47 + 6255621 attctttaattcattcattGTTAAATAGTTTATAGAACTATCACACA i manLeu1.NW_012103587v1 C 0 I 7132 s colAng1.NW_012116043v1 4574917 47 - 8658521 attctttaattcattcattGTTAAATAGTTTATAGAACTATCACACA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114780864 47 + 124281992 ATTCTTTAATTAATTCATTGTTAGATAGTTTATAGAACTATCACATA i calJac3.chr9 C 0 I 2 s saiBol1.JH378194 423401 47 - 9212255 ATTCTTTAATTAATTCATTGTTAGATAGTTTATAGAACTATCACATA i saiBol1.JH378194 C 0 I 2 s cebCap1.NW_016107484v1 2838728 47 + 4466143 ATTCTTTAATTAATTCATTGTTAGATAGTTTATAGAACTATCACATA i cebCap1.NW_016107484v1 I 308 I 2 s aotNan1.NW_018491581v1 1540564 47 + 5364348 ATTCTTTAATTAATTCATTGTTAGATAGTTTATAGAACTATCACATA i aotNan1.NW_018491581v1 C 0 I 2 s otoGar3.GL873618 4263862 47 + 7922563 ATTATATGATTAATTCACTTTTAGGTAACTTATAGAATTATCTCATA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33130128 47 - 38964690 ATTCTTTAATTAATTTATTGTTAAATAATTGATAGAACTATTATATA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 801571 12 - 1116856 CTTCTTTGTTCT----------------------------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438636 1091 - 31815103 I e mm10.chr5 124786079 1142 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I a score=9263.000000 s hg38.chr12_KI270834v1_alt 33887 4 + 119498 GTTG s panTro5.chr12 127320211 4 + 137163284 CGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125671036 4 + 135337776 CGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8184417 3 - 8369578 -GTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97832294 4 + 106955855 TATG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123956687 2 + 133663169 --CG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128204187 2 + 137757926 --CG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10604258 2 - 16319837 --CG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12226532 2 + 20526591 --CG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119199369 2 + 128539186 --CG i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4574964 2 - 8658521 --CG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114780913 4 + 124281992 TATG i calJac3.chr9 I 2 C 0 s saiBol1.JH378194 423450 4 - 9212255 TATG i saiBol1.JH378194 I 2 I 1 s cebCap1.NW_016107484v1 2838777 4 + 4466143 TATG i cebCap1.NW_016107484v1 I 2 C 0 s aotNan1.NW_018491581v1 1540613 4 + 5364348 TATG i aotNan1.NW_018491581v1 I 2 C 0 s otoGar3.GL873618 4263909 4 + 7922563 CATG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33130175 2 - 38964690 --CA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 801583 4 - 1116856 GGTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438636 1091 - 31815103 I e mm10.chr5 124786079 1142 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I e manLeu1.NW_012103587v1 512644 7132 + 6255621 I a score=3034714.000000 s hg38.chr12_KI270834v1_alt 33891 280 + 119498 TATGCATGTGTAATATAGCATGTAC----ATTATGATTTACTGATTC-GTTGGTTGTGAACTGTGG-AGTGTGTGAAGTTTTGTTCTCTATAGATGAATTAATCCTATAGTTAGTGCTGCAGGGATTTACAGGCACT-GTGGTGAGAAATGCCCTGTCTGCTTGATTCATGAAGT--CA-----ACAGAGCAGCTGTTGTTCTGTAGATAAGGAGGATTGAACATTAGTAGTCCAAAGCCTTGTT--ATTATCGTGGATGA----C-TGAGTGTGGTCTCCTATACGCCCTTAATTCTGAG s panTro5.chr12 127320215 283 + 137163284 TGTGTATGTGTAATATAGCATGTAC-ATTATTATAATTTACTGATTC-ATTGGTTGTGAACTGTGG-AGTGTGTGAAGTTTTGTTCTCTGTAGATGAATTAATCCTATAGTTAGTGCTGCAGGGATTTACAGGCACT-GTGGTGAGAAATGCCCTGTCTGCTTGATTCATGAAGT--CA-----ACAGAGCAGCTGTTGTTCTGTAGATAAGGAGGATTGAACATTAGTAGTTCAAAGCCTTGTT--ATTATCCTGGGTGA----C-TGAGTGTGGTCTCCTATACGCCCTTAATTCTGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125671040 283 + 135337776 TGTGTATGTGTAATATAGCATGTAC-ATTATTATAATTTACTGATTC-GTTGGTTGTGAACTGTGG-AGTGTGTGAAGTTTTGTTCTCTGTAGATGAATTAATCCTATAGTTAGTGCTGCAGGGATTTACAGGCACT-GTGGTGAGAAATGCCCTGTCTGCTTGATTCATGAAGT--CA-----ACAGAGCAGCTGTTGTTCTGTAGATAAGGAGGATTGAACATTAGTAGTTCAAAGCCTTGTT--ATTATCCTGGGTGA----C-TGAGTGTGGTCTCCTATACGCCCTTAATTCTGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8184420 283 - 8369578 TGTGTATGTGTAATATAGCATGTAC-ATTATTATGATTTACTGATTT-GTTGGTTGTGAACTGTGG-AGTGTGTGAAGTTTTGTTCTCTGTAGATGAATTAATCCTATAGTTAGTGCTGCAGGGATTTACAGGCACT-GTGGTGAGAAATGCCCTGTCTGCTTGATTCATGAAGT--CA-----ACAGAGCAGCTGTTGTTCTGTAGATAAGGAGGACTGAACATTAGTAGTTCAAAGCCTTGTT--ATTATCCTGGGTGA----C-TGAGTATGGTCTCCTATACGCCCTTAATTCTGAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97832298 284 + 106955855 TGTGTATGTGTAATATAGCATGTAC-ATTATTATGATTTACTGATTT-GTTGGTTGTGAACTGTGG-AGTGTGTGAACTTTTGTTGTCTGTAGATGAATTAATCCTATAGTTAGTGCTGCAGGGATTTACAGGCACT-GTGGTGAGAAATGCCCTGTCTGCTTGATTCATGAAGT--CA-----ACAGAGCAGATGTTGTTCTGCCAATAAGAAGGATTGAACATTAGTAGCTCAAAGCCTTGTT--ATTATCCTGGATGA----CTTGAGTATGGTCTCCTATATGCCCTTAATTCTGAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123956689 284 + 133663169 TATGTATGTCTAATGTAGCATGTAC-ATTATTACGACTTACTGATTT-GTTGGTTGTGAACTGTGG-AGTGTGTGATGTTTAGTTCTCTTTGGCTGAATTAATCCTATAGTTAGGGCTGTGGGGATTTACAGGCACT-ATGGTGAGAAGTGCCCTGTCTGCTTGATCCATGAAGT--CA---GCACAGAGCAGATGTTGTTCTGCAAGTAAGAAGGATTGAACATTTGTAGTTCAAAGCTTTGTT--ATT-TCCTGGATGA----C-TGAGTACGGTCTCCTATACGCCCTTAATTCTGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128204189 285 + 137757926 TATGTATGTCTAATGTAGCATGTAC-ATTATTATGACTTACTGATTT-GTTGGTTGTGAACTGTGG-AGTGTGTGATGTTTAGTTCTCTTTGGCTGAATTAATCCTATAGTTAGGGCTGCGGGGATTTACAGGCACT-ATGGTGAGAAGTGCCCTGTCTGCTTGATCCATGAAGT--CA---GCACAGAGCAGATGTTGTTCTGCAAGTAAGAAGGATTGAACATTTGTAGTTCAAAGCTTTGTT--ATTATCCTGGATGA----C-TGAGTACGGTCTCCTATACGCCCTTAATTCTGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10604260 285 - 16319837 TATGTATGTCTAATGTAGCATGTAC-ATTATTATGACTTACTGATTT-GTTGGTTGTGAACTGTGG-AGTGTGTGATGTTTAGTTCTCTTTGGCTGAATTAATCCTATAGTTAGGGCTGCGGGGATTTACAGGCACT-ATGGTGAGAAGTGCCCTGTCTGCTTGATCCATGAAGT--CA---GCACAGAGCAGATGTTGTTCTGCAAGTAAGAAGGATTGAACATTTGTAGTTCAAAGCTTTGTT--ATTATCCTGGATGA----C-TGAGTACGGTCTCCTATACGCCCTTAATTCTGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12226534 285 + 20526591 TATGTATGTCTAATGTAGCATGTAC-ATTATTATGACTTACTGATTT-GTTGGTTGTGAACTGTGG-AGTGTGTGATGTTTAGTTCTCTTTGGCTGAATTAATCCTATAGTTAGGGCTGTGGGGATTTACAGGCACT-ATGGTGAGAAGTGCCCTGTCTGCTTGATCCATGAAGT--CA---ACACAGAGCCGATGTTGTTCTGCAGGTAAGAAGGATCGAACGTTTGTAGTTCAAAGCTTTGTT--ATTATCCTGGATGA----C-TGAGTACGGTCTCCTATACGCCCTTAATTCTGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119199371 282 + 128539186 TATGCATGTCTAATGTAGCATGTAC-ATTATTATGACTTACTGATTT-GTTGGTTGTGAACTGTGG-AGTGTGTGATGTTTAGTTCTCTTTGGTTGAATTAATCCTATAGTTAGGGCTGTGGGGATTTACAGGCACT-ATGGTGAGAAGTGCCCTGTCTGCTTGATCCATGAAGT--CA---ACACAGAGCAGATGTTCTGC---AGGTAAGAAGGATTGAACATTTGTAGTTCAAAGCTTGGTT--ATTATCCTGGATGA----C-TGAATACGGTCTCCTATACGCCCTTAATTCTGAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 519776 284 + 6255621 TATGTATGTCTAATGTAGCATGTAC-ATTATTATGACTTACTGATTT-GTTGGTTGTGAACTGTGG-AGTGTGTGATGTTTAGTTCTCTTTGGCTGAATTAATCCTATAGTTAGGGCTGCGGGGATTTACAGGCACT-ATGGTGAGAAGTGCCCTGTCTGCTTGATCCATGAAGT--CA---GCACAGAGCAGATGTTGTTCTG-AAGTAAGAAGGATCGAACATTTGTAGTTCAAAGCTTTGTT--ATTATCCTGGATGA----C-TGAGTACGGTCTCCTATACGCCCTTAATTCTGAG i manLeu1.NW_012103587v1 I 7132 C 0 s colAng1.NW_012116043v1 4574966 285 - 8658521 TATGTATGTCTAATATAGCATGTAC-ATTATTATGACTTACTGATTT-GTTGGTTGTGAACTGTGG-AGTATGTGATATTTAGTTCTCTTTGGTTGAATTAATCCTATAGTTAGGGCTGTGGGGATTTACAGGCACT-ATGGTGAGAAGTGCCCTGTCTGCTTGATCCATGAAGT--CA---ACACAGAGCAGATGTTGTTCTGCAAGTAAGAAGGATTGAACATTTGTAGTTCAAAGCTTTGTT--ATTATCCTGGATGA----C-TGAGTATGGTCTCCTATACGCCCTTAATTCTGAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114780917 287 + 124281992 TGTGTATGTGGAATATAACATGTAC-ATTATTATTATTTACTGACTT-GTTGGTTGTGAACTGGGG-AGTGTGTGAAGTTTAGTTCTCTTTAGATTAATTGATGCTATGGTGAATGCTGCGGGGATTTACAGGCATC-ATGGGGAGAAATGCC--ATCTGCTTGATTCACGAAGT--CC---ACACAGAGCAGGTGCTGTTCTGTAAATAAGAAGGATTGAACGTTAGTAGTTCAAAGCCTTGTT--ATTATCCTGGATAATATCC-TGAGTATGGTCTCCTATACACCCTTAATTCTGAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 423455 282 - 9212255 TGTGTATGTGTCATATAACATGTAC-ATTGTTATTGTTTACTGACTT-GTTGGTTGTGAACTGGGG-AGTGCGTGAAGTTTAGTTCTCTTTAGATTAATTGGTGTTACAGTGAGTGCTGC-GGTATTTACAGGCATC-GTGGGGAGAAATGCC--GTCTGCCTGATTCACGAAGT--CC---ACTCAGAGCGGGTGCCATCCTGTAAATAAGAAGGATTGAACATTAGTAGTTCAAAGCCTTGTT--ATTATCCTGGATGA----C-CGAGTATGGTCTCCTATACGCCCTTAATTCTGAG i saiBol1.JH378194 I 1 C 0 s cebCap1.NW_016107484v1 2838781 283 + 4466143 TGTGTATGTGTAATATAACATGCAC-ATTATTATTATTTGCTGATTT-GTTGGTTGTGAACTGGGG-AGTGCATGAAGTTTAGTTCTCTTCAGATTAATTGATGTTATAGTGAGTGCTGCGGGGATTTACAGGCATC-ATGGGGAGAAATGCC--ATCTGCTTGATTCACGAAGT--CC---ACACAGAGCAGGTGCTGTTCTGTAAATAAGAAGGAGTGAACGTTAGTAGTTCAAAGCCTTGTT--ATTTTCCTGGGTGG----C-TGAATGTGGTCTCCTATACACCCTTAATTCTGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1540617 283 + 5364348 TGTGTATGTGTAATATAACATGTAC-ATTGTTATTATTTACTGACTC-GTTGGTTGTGAACTGGGG-AGTGTGTGAAGTTTAGTTCTCTTTAGATTAAATGATGCTATAGTGAGTGCTGCGGGGATTTACAGGCATC-ATGGGGAGAAATGCC--ATCTGCTTGATTCACGAAGT--CC---ACACAGAGCAGGTGCTGTTCTGTAAATAAGAAGGGTTGAACGTTAGTAGTTCAAAGCCTTGTT--ATTATCCTGGATGA----C-TGAGTATGGTCTCCTATACGCCCTAAATTCTGAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4263913 271 + 7922563 TGTGTATGTGTAATATAATATGCA--------------TAATTATTT-GTGAATTATGAACTATGGTTTTGTGTGATGTTTAGGCTTTTTTAGATGAATTAACCAT-------GTGTTGCAGGAATTTACAAGCATT-ACAGCGGGAAGCAACCTGTCTACTTGATTTATGAAGT--CAGCAACACAGAGCAGATACTGTTCTGTAAATAAGAGAGATTGAACGTTAGTGGTTCAAAGGCTTGTTGCATTATCCCAGATGA----C-TGAATATTGTCTCCTTCATACCATTAACTGTGGA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33130177 272 - 38964690 TATGCATATATA----TGCATGCACCATTATTTTTATTTACTTATTCAGTTAATCATGAACTGCTG-TTTGTGTGAAGTCTGGTTTTCTGCAGATGAATTAATTCCATAGT----GTTGCAGGAGTTTGCAGGCATGAAGGGTGGCAAATGCCCTGTGTACACAATTTATAAAGT--CAGCAACACAAAGTGGATA---TCCTGTAAATATG-AGGATTGAATATTAGTAGTCCAAGTGTGTTAT--GTTTTCTTGGATAA----C-----TATGATCTCTTATATAC---TAGTTATGAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 801587 247 - 1116856 ------------------AATGCAT-GTTATTATTATT------ATT-GCTAACTTTGAACTGTGG-CTTATGTGATGTTT--CTTTCTCTAGATGAGTTA----CATGGC----GCTGTGGGAATTTGCAGGCATT-ATAGTGGGAA-TGACCTG-CCACGTGGTTTTTAAAGTAGCA---ACGCAGAGCAGAGGTCAT-CTGTAAATGCCAGGGA-TAAACATGAGTTTTCCAAGGTCTTGTTCTATTATCCTGGATGA----T-GGAGTATTGTTTCCTCTATACC---AATGCTGA- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438636 1091 - 31815103 I e mm10.chr5 124786079 1142 + 151834684 I e proCoq1.NW_012154285v1 6689618 3934 - 9870158 I a score=358913.000000 s hg38.chr12_KI270834v1_alt 34171 34 + 119498 ATATTTACTTAAA-TGTCATATatat-----------------------------------------------------------------gaatatgta s panTro5.chr12 127320498 34 + 137163284 ATATTTACTTAAA-TGTCATATatat-----------------------------------------------------------------gaatatgta i panTro5.chr12 C 0 C 0 s panPan2.chr12 125671323 34 + 135337776 ATATTTACTTAAA-TGTCATATatat-----------------------------------------------------------------gaatatgta i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8184703 34 - 8369578 ATATTTACTTAAA-TGTCATATATAT-----------------------------------------------------------------GAATATGTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97832582 34 + 106955855 ATATTTACTTAAA-TGTCATATatat-----------------------------------------------------------------gaatatgta i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123956973 34 + 133663169 ATATTTACTTAAA-TGCCATATatat-----------------------------------------------------------------gaatatgga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128204474 34 + 137757926 ATATTTACTTAAA-TGCCATATatat-----------------------------------------------------------------gaatatgga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10604545 34 - 16319837 ATATTTACTTAAA-TGCCATATatat-----------------------------------------------------------------gaatatgga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12226819 34 + 20526591 ATATTTACTTAAA-TGCCATATATAT-----------------------------------------------------------------GAATATGGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119199653 34 + 128539186 ATATTTACTTAAA-TGTCATATATAT-----------------------------------------------------------------GAATATAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 520060 34 + 6255621 ATATTTACTTAAA-TGCCATATatat-----------------------------------------------------------------gaatatgga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4575251 34 - 8658521 ATATTTACTTAAA-TGTCATATatat-----------------------------------------------------------------gaatatgga i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114781204 34 + 124281992 ATATTCACTTAAA-TGTCATATATAT-----------------------------------------------------------------GAATATGTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 423737 34 - 9212255 ATATTCACTTAAA-TGTCATGTATAT-----------------------------------------------------------------GAATATGTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2839064 34 + 4466143 ATATTCACTTAAA-TGTCATATattt-----------------------------------------------------------------gaatatgta i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1540900 34 + 5364348 ATATTCACTTAAA-TGTCATATATAT-----------------------------------------------------------------GAATGTGTA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6693552 34 - 9870158 ATATTTACATAAA-TGTCATGTATAG-----------------------------------------------------------------GAATATGTG i proCoq1.NW_012154285v1 I 3934 C 0 s otoGar3.GL873618 4264184 99 + 7922563 ACATTTACATAAA-TGTCAGATATagtagaacttccataactcaccacctccctacactgaccatctccttaagtctaattttcatagactggacatgca i otoGar3.GL873618 C 0 I 116 s canFam3.chr26 33130449 35 - 38964690 ATATTTACATAAATTGTTGTAGGCAT-----------------------------------------------------------------GAATATGTA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 801834 2 - 1116856 ---------TA----------------------------------------------------------------------------------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438636 1091 - 31815103 I e mm10.chr5 124786079 1142 + 151834684 I a score=1612546.000000 s hg38.chr12_KI270834v1_alt 34205 125 + 119498 atatg-cataaatatgaaatatacatgaaAGT--TAGCTTCTTGGTGCCCTCCAGAGGCAAAGCTGTGCTTCTAGTTCAG-----ACTTCATTTGTGCTGTGGCCACATTTTTGGTGAAATGTGGTTGCTTTA s panTro5.chr12 127320532 125 + 137163284 atatg-cataaatatgaaatatacatgaaAGT--TAGCTTCTTGGTGCCCTCCAGAGGCAACGCTGTGCTTCTAGTTCCG-----ACTTCATTTGTGCTGTGGCCACATTTTTGGTGAAATGTGGTTGCTTTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125671357 125 + 135337776 atatg-cataaatatgaaatatacatgaaAGT--TAGCTTCTTGGTGCCCTCCAGAGGCAACGCTGTGCTTCTAGTTCCG-----ACTTCATTTGTGCTGTGGCCACATTTTTGGTGAAATGTGGTTGCTTTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8184737 125 - 8369578 ATATG-CATAAATATGAAATATACATGAAAGT--TAGCTTCTTGGTGCCCTCCAGAGGCAACGCTGTGCTTCTAGTTCCG-----ACTTCATTTGTGCTGTGGCCACATTTTTGGTGAAATGTGGTTGCTTTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97832616 125 + 106955855 atatg-cataaatatgaaatatacatgaaAGT--TAGCTTCTTGGTGCCCTCCAGAGGCAAAGCTGTGCTTCTAGTTCAG-----ACTTCATTTGTGCTGTGGCCACATTTTTGGTGAAACGTGGTTGCTTTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123957007 125 + 133663169 atatg-cataaatatgaaatatacatgaaAGT--TAGCTTCTTGGCGCCCTCCAGAGGCGAAGCTGTGCTTCTAGTTCAG-----ACCTCATTTGTGCTGTGGCCACATTTTTGGTGAAATGTGGTTGCTTTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128204508 125 + 137757926 atatg-cataaatatgaaatatacatgaaAGT--TAGCTTCTTGGCGCCCTCCAGAGGCGAAGCTGTGCTTCTAGTTCAG-----ACCTCATTTGTGCTGTGGCCACATTTTTGGTGAAATGTGGTTGCTTTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10604579 125 - 16319837 atatg-cataaatatgaaatatacatgaaAGT--TAGCTTCTTGGCGCCCTCCAGAGGCGAAGCTGTGCTTCTAGTTCAG-----ACCTCATTTGTGCTGTGGCCACATTTTTGGTGAAATGTGGTTGCTTTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12226853 125 + 20526591 ATATG-CTTAAATATGAAATATACATGAAAGT--TAGCTTCTCGGCGCCCTCCAGAGGCGAAGCTGTGCTTCTAGTTCAG-----ACCTCATTTGTGCTGTGGCCACATTTTTGGTGAAATGTGGTTGCTTTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119199687 125 + 128539186 ATATG-CATAAATATGAAATATACATGAAAGT--TAGCTTCTTGACGCCCTCCAGAGGCGAAGTTGTGCTTCTAGTTCAG-----ACCTCGTTTGTGCTGTGGCCACGTTTTTGGTGAAATGTGGTTGCTTTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 520094 125 + 6255621 atatg-cataaatatgaaatatacatgaaAGT--TAGCTTCTCGGCGCCCTCCAGAGGCGAAGCTGTGCTTCTAGTTCAG-----ACCTCATTTGTGCTGTGGCCACATTTTTGGTGAAATGTGGTTGCTTTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4575285 125 - 8658521 atatg-cataaacatgaaatatacatgaaAGT--TAGCTTCTTGGCGCCCTCCAGAGGCGAAGCTGTGCTTCTAGTTCAG-----ACTTCATTTGTGCTGTGGCCACATTTTTGGTGAAATGTGGTTGCTTTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114781238 125 + 124281992 ATGTG-CATAAATATGAAACATACATGATATT--TAGCTTCTTGGTGCCCTCCAAAGGCAAAGCTGTGCTTCTAGCTCAG-----ACTTCATTTGTGCCGTGGCCACAGTTTTGGTGAAATGTAGTTGCTTTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 423771 125 - 9212255 ATATG-CATAAATATGAAACATACATGACATT--TAGCTTCTTGGTGCCCTCGAAAGGCAGAGCTGTGCTTCTAGTCCAG-----ACTTCATTTGTGCGGTGGCCACAGTTTTGGTGAAATGTGGTTGCTTTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2839098 126 + 4466143 atatgaaatcaatatgaaACATACATGACATT--TAGCTTCTTGGTGCCCTCCAAAGGCAAAGCTGTGCTTCTAGTTCAG-----ACTGCATTTGTGCTGTGGCTACAGTTTTGGTGAAATGTGGTTGCTTTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1540934 125 + 5364348 ATATG-CGTAAATATGAAACATTCATGACATT--TACCTTCTTGGTGCCCTCCAAAGGCAAAGCTGTGCTTCTAGTTCAG-----ACTTCATTTGTGCTGTGGCCACAGTTTTGGTGAAATGTAGTTGCTTTA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6693586 111 - 9870158 ATATC-TGTGAATATGAAGTGTACATGTAAGT--TAGCTTCTTGGTGTCCTTCACAGGCAAAACTGTTT-------------------TCATTTGTGTTGGGGCCACATTTTTGGTGAAATGTGGTTCCTTTA i proCoq1.NW_012154285v1 C 0 I 2295 s otoGar3.GL873618 4264399 127 + 7922563 ATATG-TATGAATATGAAATATACACAAAAGTTATAGCTTCTTGGTGCCCTTCACAGGCAAAGCTGTGTTTCCAGTTCAC-----ACCTCATTTGTGGTAAAGCCATATTTTTCTTGAAATGTGCTCCCTTTG i otoGar3.GL873618 I 116 C 0 s canFam3.chr26 33130484 102 - 38964690 -----------------------------GCT--TAGTTTCTCGATGCCCTCAAAAGGCAAAGCTGTGCTTTCAGTTCAGCTGAAAGCACACTTGTGTTGGGGCCACATTTTTGGTGAAACATGGTTTCCTTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 801836 94 - 1116856 -----------ATAT--------CACAAAAGT--TACCTTCATAG-----------GGCAAAGCCATGCTT-TAACTGAG-----GCCTCGTTTGTGTTGGGGCCA-ATTTTCAGTGAATCGTGGTTGCTCTA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438636 1091 - 31815103 I e mm10.chr5 124786079 1142 + 151834684 I a score=919852.000000 s hg38.chr12_KI270834v1_alt 34330 76 + 119498 TATTTAGAAG-AAAGCACTAACAGTGAA-GGGAAGCCCAGTGAAGAGTTTGCATGGGTTGCATTTTCAATTTTGGATT s panTro5.chr12 127320657 76 + 137163284 TATTTAGAAG-AAAGCACTAACAGTGAA-GGGAAGCCCAGTGAAGAGTTTGCACGGGCTGCATTTTAAATTTTGGATT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125671482 76 + 135337776 TATTTAGAAG-AAAGCACTAACAGTGAA-GGGAAGCCCAGTGAAGAGTTTGCACGGGCTGCATTTTAAATTTTGGATT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8184862 76 - 8369578 TATTTAGAAG-AAAGCACTAGCAGTGAA-GGGAAGCCCAGTGAAGAGTTTGCATGGGCTGCATTTTAAATTTTGGATT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97832741 76 + 106955855 TGTTTAGAAG-AAGGCACTGACGGTGAA-GGGAAGCCCAGTGAAGAGTTTGCATGGGTTGCATTTTAAATTTTGGATT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123957132 76 + 133663169 TGTTTAGAAG-AAAGCACTAACAGTGAA-GGGAAGCCCAGTGAAGAGTTTGCATGGGTTGCATTTTAAATTTTGGCTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128204633 76 + 137757926 TGTTTAGAAG-AAAGCACTAACAGTGAA-GGGAAGCCCAGTGAAGAGTTTGCATGGGTTGCATTTTAAATTTTGGCTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10604704 76 - 16319837 TGTTTAGAAG-AAAGCACTAACAGTGAA-GGGAAGCCCAGTGAAGAGTTTGCATGGGTTGCATTTTAAATTTTGGCTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12226978 76 + 20526591 TGTTTAGAAG-AAAGCGCTAACAGTGAA-GGGAAGCCCAGTGAAGAGTTTGCATGGGTTGCATTTTAAATTTTGGCTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119199812 77 + 128539186 TGTTTAGAAGAAAAGCACTAACAGTGAA-GGGAAGCCCAGTGAAGAGTTTGCATGGATTGCATTTTAAATTTTGGCTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 520219 76 + 6255621 TGTTTAGAAG-AAAGCACTAACAGTGAA-GGGAAGCCCAGTGAAGAGTTTGCATGGGTTGCATTTTAAATTTTGGCTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4575410 76 - 8658521 TGTTTAGAAG-AAAGCACTAACAGTGAA-GGGAAGCCCAGTGAAGAGTTTGCATGGGTTGCATCTTAAATTTTGGCTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114781363 75 + 124281992 TGTTTGGAAG-GAACCACTAACAGAGAA-GGGAGGCCC-GGGGAGAGTTGACATGGGTTGCATTTTAAATTTTGGATT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 423896 76 - 9212255 TGTTTGGAAG-AAACCACTAACAGTGAA-GGGAAGCCCAGGGGAGGGTCTACATGGGTTGCATTTTAAATTCTGGATT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2839224 76 + 4466143 TGTTTGGAAG-AAACCACTAACAGTGAA-GGGAAGCCCAGGGGAGAGTTTACATGGGTTGCATTTTAAATTTTGGATT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1541059 76 + 5364348 TGTTTGGAAG-AAACTACTAACAGTGAA-GGGGAGCCCAGGGGAGAGTTTACATGGGTTGCATTTTAAATTTTGGATT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4264526 76 + 7922563 CATTTAGTAT-AAACCACTACCAGTGAA-TGGGAAGCTGGTGGAGGGTTTATGTGGATTACATTCTAAATTTTGAACT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33130586 77 - 38964690 CATTTAGTGT-AAACCATTAACAGTAAGCAGGAAGCCCACAGGAGAGTTTGTGTGGGTTGCATTTTAAATTCTGGATT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 801930 76 - 1116856 TATTTTAGTG-TAACCATTAACAGTGAA-TAGAGAGACCAGGAGTTGTTTGAATGGATTGCATTTTAAATGTTGCATT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438636 1091 - 31815103 I e mm10.chr5 124786079 1142 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I a score=1187307.000000 s hg38.chr12_KI270834v1_alt 34406 94 + 119498 AAAGTCAAAACATCTAATTCCTCATAGAGGGAACC---------CAGACTGTTTTCCTCATGCATTTAGTTGTCTTGAACCATGGCTAAAGC--CTCTC--T--TGATT s panTro5.chr12 127320733 94 + 137163284 GAAGTCAAAACATCTAATTCCTCATAGAGGGAACC---------CAGACTGTTTTCCTCATGCATTTAGTTTTCTTGAACCATGGGTAAAGC--CTCTC--T--TGATT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125671558 94 + 135337776 GAAGTCAAAACATCTAATTCCTCATAGAGGGAACC---------CAGACTGTTTTCCTCATGCATTTAGTTTTCTTGAACCATGGCTAAAGC--CTCTC--T--TGATT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8184938 94 - 8369578 GAAGTCAAAACATCTAATTCCTCATAGAGGGAACC---------CAGACTGTTTTCCTCATGCATTTAGTTTTCTTGAACCATGGCTAAAGC--CTCTC--T--TGATT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97832817 94 + 106955855 GAAGTCAAAACATCTAATTCCTCATAGAACGAACC---------CAGACTGTTTTCCTCATGCATTTAGTTTGCTTGAACCATGACTAAAGC--CTCTC--T--TGATT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123957208 94 + 133663169 GAATTCAAAACATCTAATTCCTCACAGAGGGAACC---------CAGACTGTTTTCCTCATGCATTTAGTTTGCTTGAACCATGGCTAAAGC--CTCTC--T--TGATT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128204709 94 + 137757926 GAATTCAAAACATCTAATTCCTCACAGAGGGAACA---------CAGACTGTTTTCCTCATGCATTTAGTTTGCTTGAACCATGGCTAAAGC--CTCTC--T--TGATT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10604780 94 - 16319837 GAATTCAAAACATCTAATTCCTCACAGAGGGAACC---------CAGACTGTTTTCCTCATGCATTTAGTTTGCTTGAACCATGGCTAAAGC--CTCTC--T--TGATT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12227054 94 + 20526591 GAATTCAAAACATCTAATTCCTCACAGAGGGAACC---------CAGACTGTTTTCCTCATGCATTTAGTTTGCTTGAACCATGGCTAAAGC--CTCTC--T--TGATT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119199889 94 + 128539186 GAATTTAAAACATTTAATTCCTCACAGAGGGAACC---------CAGACTGTTTTCCTCATGCATTTAGTTTGCTTGAACCATGGCTAAAGC--CTCTC--T--TGATT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 520295 94 + 6255621 GAATTCAAAACATCTAATTCCTCACAGAGGGAACC---------CAGACTGTTTTCCTCATGCATTTAGTTTGCTTGAACCATGGCTAAAGC--CTCTC--T--TGATT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4575486 94 - 8658521 GAATTCAAAACATCTAATTCCTCACAGAGGGAACC---------CAGACTTTTTTCCTCATGCATTTAGTTTGCTTGAACCATGGCTAAAGC--CTCTC--T--TGATT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114781438 94 + 124281992 GAATTCAAAACATCTGACTCGTCACAGAGGGAACC---------CAGATTGTTTTCCTCATGCATTTAGTTTGCTTGAACCATGGCTAAAGT--CTCTC--T--TGATT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 423972 93 - 9212255 GAATTCAAAACATCTAATTCCTCACAGAGGGAACC---------CAGATTGTTTTCCTCATGCATTTAGTTTGCTTGAACCATGGCTAAAGT---TCTC--T--TGATT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2839300 93 + 4466143 GAATTCAAAACATCTAATTCCTCACAGAGGGAACC---------CAGATTGTTTTCCTCATGTATTTAGTTTGCTTGAACCATGGCTAAAGT--CTCTC-----TGATT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1541135 94 + 5364348 GAATTCAAAACATCTAATTCCTCACAGAGGGAACC---------CAGATTGTTTTCCTCATGCATTTAGTTTGCTTGAACCACGGCTAAAGT--CTCTC--T--TGATT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4264602 96 + 7922563 GGATTCAGAACATCTGATTCTTCACATAGGCAACC---------CAGACTGATTTGCTAATGCTGTTAGTTTGCCTGGACCAAGGCTGAAGC--CTCTC--TTCTGATT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124787221 92 + 151834684 AAAGTAGAAACACAGAGGGCTTTAAAATGGGTTCC---------CA----CCTGCCTTTGCGTGTTTCGTTGGCCTGAGCCATGGCTAAAGCTGCCTCT--T--TGGTT i mm10.chr5 I 1142 C 0 s canFam3.chr26 33130663 95 - 38964690 GGATCCAAAACATCGAA-TCCTCACATAGGTGGTG---------CAGACTGTTTTCCTAATGCATTTAGGCCACCTGGACCACAACTGCAGC--CTCTCATT--TGATT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 802006 98 - 1116856 ------TAAACATTTGTTTAATGTTGGAAACATCTTACCTGGTGCAGCTTGTTTTCCTAATGCACCTAGCCT-CCTCAACCACAGCTGAAGC--CCCTCCTT--CGATC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9438636 1091 - 31815103 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I a score=3504315.000000 s hg38.chr12_KI270834v1_alt 34500 199 + 119498 TAGGCTTGGGCTGACGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTACGGCATCCTGGACCCAACCACCCGAGACTGGACAGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAAGCCAACAGACAAGAAGGAGCGAAAGTGAGTATCT-TTGT-AGGTAGGAAAGAGCCTGGGTTAG s panTro5.chr12 127320827 199 + 137163284 TAGGCTTGGGCTGATGACAAAGTTATACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTACGGCATCCTGGATCCAACCACCCGAGACTGGACAGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAAGCCAACAGACAAGAAGGAGCGAAAGTGAGTATCT-TTGT-AGGTAGGAAAGAGCCTGGGTTAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125671652 199 + 135337776 TAGGCTTGGGCTGATGACAAAGTTATACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTACGGCATCCTGGATCCAACCACCCGAGACTGGACAGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAAGCCAACAGACAAGAAGGAGCGAAAGTGAGTATCT-TTGT-AGGTAGGAAAGAGCCTGGGTTAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8185032 199 - 8369578 TAGGCTTGGGCTGATGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTACGGCATCCTGGATCCAACCACCCGAGACTGGACAGATGGAGTGTTGTCAAACATCTTCAGGGAAATCAACAAGCCAACAGACAAGAAGGAGCGAAAGTGAGTATCT-TTGT-AGGTAGGAAAGAGCCTGGGTTAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97832911 199 + 106955855 TAGGCTTGGGCTGATGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTATGGCATCCTGGACCCAACCACCCGAGACTGGACAGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAAGCCAACGGACAAGAAGGAGCGAAAGTGAGTATCT-TTGT-AGGTAGGAAAGATCCTGGGTTAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123957302 199 + 133663169 TAGGCTTGGGCTGATGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTATGGCATCCTGGACCCAACCACCCGAGACTGGACCGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAGGCCAACGGATAAGAAGGAGCGAAAGTGAGTATCT-TTGT-AGGTAGGAAAGAGCCTGAGTTAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128204803 199 + 137757926 TAGGCTTGGGCTGATGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTATGGCATCCTGGACCCAACCACCCGAGACTGGACCGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAGGCCAACGGATAAGAAGGAGCGAAAGTGAGTATCT-TTGT-AGGTAGGAAAGAGCCTGAGTTAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10604874 199 - 16319837 TAGGCTTGGGCTGATGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTATGGCATCCTGGACCCAACCACCCGAGACTGGACCGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAGGCCAACGGATAAGAAGGAGCGAAAGTGAGTATCT-TTGT-AGGTAGGAAAGAGCCTGAGTTAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12227148 199 + 20526591 TAGGCTTGGGCTGATGACAAAGTTGTATATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTATGGCATCCTGGACCCAACCACCCGAGACTGGACGGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAGGCCAACGGATAAGAAGGAGCGAAAGTGAGTATCT-TTGT-AGGTAGGAAAGAGCCTGAGTTAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119199983 199 + 128539186 TAGGCTTGGGCTGATGACGAAGTTGTACATCCTGAACCCCAAAGCTGTGAGTGTCATAGAACTCTATGGCATCCTGGACCCAACTACCCGAGACTGGACCGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAGGCCAACGGATAAGAAGGAGCGAAAGTGAGTATCT-TTGT-AGGTAGGAAAGAGCCTGGGTTAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 520389 199 + 6255621 TAGGCTTGGGCTGATGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTATGGCATCCTGGACCCAACCACCCGAGACTGGACCGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAGGCCAACGGATAAGAAGGAGCGAAAGTGAGTATCT-TTGT-AGGTAGGAAAGAGCCTGGGTTAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4575580 199 - 8658521 TAGGCTTGGGCTGATGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTATGGCATCCTGGACCCAACCACCCGAGACTGGACCGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAGGCCAACGGATAAGAAGGAGCGAAAGTGAGTATCT-TTGT-AGGTAGGAAAGAGCCTGGGTTGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114781532 199 + 124281992 TAGGCTTGGGCTGATGACAAGGTTATACATCCTGAACCCCAAAGCCGTGAGTGTCACAGAACTCTATGGCATCCTGGACCCCACCACCCGAGACTGGACCGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAAGCCAACGGATAAGAAGGAGCGAAAGTGAGTATCC-TTGT-GGGTAGGAAAGAGCCTGGGTTAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 424065 200 - 9212255 TAGGCTTGGGCTGATGACAAAGTTATACATCCTGAACCCCAAAGCTGTGAGTGTCATAGAACTCTATGGCATCCTGGACCCCACCACTCGAGACTGGACCGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAAGCCAACGGATAAGAAGGAGCGAAAGTGAGTATCCTTTGC-AGGTAGGAAAGAGCCTGCGTTAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2839393 199 + 4466143 TAGGCTTGGGCTGATGACAAAGTTATACATCCTGAACCCCAAAGCCATGAGTGTCATAGAACTCTATGGCATCCTGGACCCCACCACCCGAGACTGGACCGATGGCGTGTTGTCAAACATCTTCAGGGAAATCAACAAGCCAACAGATAAGAAGGAGCGAAAGTGAGTATCC-TTGT-AGGTAGGAAAGAGCCTGGGTTAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1541229 196 + 5364348 TAGGCTTGGGCTGATGACAAAGTTATACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTATGGCATCCTGGACCCCACCACCCGAGACTGGACCGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAAGCCAACAGATAAGAAGGAGCGAAAGTGAGTATCC-TT----GGCAGGAAAGAGCCTGGGTTAG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9439727 199 - 31815103 TAGGCTTGGGATAACGACCAAGTTGTACATCCTGAACCCCAAAGCTGTGAGCGTCATAGAGCTCTATGGCATCCTGGACCCCACCACCCGCGACTGGACCGATGGGGTGTTGTCGAACATCTTCAGGGAAATCAACAGGCCGACGGATAAGAAGGAGCGAAAGTGAGTGTTT-TTGT-AGGCAGGTAAGAGCCAGGGTTAG i micMur3.chr21 I 1091 I 500 s otoGar3.GL873618 4264698 199 + 7922563 TAGGCTTGGGATAATGACAAAGTTGTACACCCTGAACCCCAAGGCTGTAAGTGTCATAGAACTCTATGGTATCCTGGACCCCACCACCAGAGACTGGACAGATGGGGTATTGTCAAACATCTTCAGGGAAATCAACAGGCCAACGGATAAGAAGGAGCGAAAGTGAGTATTT-TTCT-AAAAAGGAAAGAGCCTAGACTAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124787313 199 + 151834684 TAGGCTTGGGATAATGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATTGAGCTGTATGGCATCCTGGATCCCACCACTCGAGACTGGACAGATGGGGTGCTGTCGAACATCTTCCGGGAGATCAACAGGCCGACCGACAAGAAGGAACGGAAGTGAGTGCTC-TCCT-AATTGGCCAGACGCCTGGATTAG i mm10.chr5 C 0 C 0 s canFam3.chr26 33130758 200 - 38964690 TAGGCTTGGGCTGATGACAAAGCTGTACATCTTGAATCCCAAAGCTGTGAGTGTCATAGAGCTCTATGGCATCCTAGACCCCACCACCCGAGACTGGACAGATGGAGTGCTGTCAAACATTTTCAGGGAGATCAACAAGCCAACGGATAAGAAGGAGCGAAAGTGAGTACCT-TTTTGAGTTAGGAGGGAGCCTGGGTTAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 802104 200 - 1116856 TAGGCTTGGGCTGGTGACAAAGCTGTACATCCTGAACCCCAAAGCTGTCAGTGTCATAGAACTCTACGGCATTCTGGATCCCACCACCCGAGACTGGACAGATGGAGTTTTGTCAAACATCTTCAGGGAGATCAACAAGCCAACGGATAAGAAGGAGCGCAAGTGAGTACCT-TTGTTAGGTAGGACAGAACCTGGGGTAA i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I a score=78030.000000 s hg38.chr12_KI270834v1_alt 34699 5 + 119498 TTAAT s panTro5.chr12 127321026 5 + 137163284 TTAAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125671851 5 + 135337776 TTAAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8185231 5 - 8369578 TTAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97833110 5 + 106955855 TTAAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123957501 5 + 133663169 TTAAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128205002 5 + 137757926 TTAAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10605073 5 - 16319837 TTAAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12227347 5 + 20526591 TTAAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119200182 5 + 128539186 TTAAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 520588 5 + 6255621 TTAAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4575779 5 - 8658521 TTAAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114781731 5 + 124281992 TTAAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 424265 5 - 9212255 TTAAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2839592 5 + 4466143 TTAAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1541425 5 + 5364348 TTAAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4264897 5 + 7922563 TTGAT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124787512 5 + 151834684 CTAAt i mm10.chr5 C 0 I 2185 s canFam3.chr26 33130958 5 - 38964690 TTCAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 802304 5 - 1116856 TTAAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9439926 500 - 31815103 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I a score=405044.000000 s hg38.chr12_KI270834v1_alt 34704 33 + 119498 GTTAATTAGCTCAACATTAAAAACGGTGGCAGG s panTro5.chr12 127321031 33 + 137163284 GTTAATTAGCTCAACATTAAAAACAGTGGCAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125671856 33 + 135337776 GTTAATTAGCTCAACATTAAAAACAGTGGCAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8185236 33 - 8369578 GTTAATTAGCTCAACATTAAAAACGGTGGCAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97833115 33 + 106955855 GTTAATTAGCTCAACATTAAAAACGGTGGCAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123957506 33 + 133663169 GTTAATTAGCTCAACATTAAAAACGGTGGCAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128205007 33 + 137757926 GTTAATTAGCTCAACATTAAAAACGGTGGCAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10605078 33 - 16319837 GTTAATTAGCTCAACATTAAAAACAGTGGCAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12227352 33 + 20526591 GTTAATTAGCTCAACATTAAAAACGGTGGCAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119200187 33 + 128539186 GTTAATTAGCTCAACATTAAAAACGGTGGCAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 520593 33 + 6255621 GTTAATTAGCTCAACATTAAAAATGGTGGCAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4575784 33 - 8658521 GTTAATTAGCTCAACATTAAAAACGGTGGCAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114781736 33 + 124281992 GTCAATTAGCTCATCATTAAAAACGGTGGCAGg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 424270 33 - 9212255 GTTAATTAGCTCATCATTAAAAATGGTGGCAGg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2839597 33 + 4466143 GTTAATTAGCTCATCATTAAAAACGGTGGCAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1541430 33 + 5364348 GTTAATTAGCTCATCATTAAAAATGGTGGCAGg i aotNan1.NW_018491581v1 C 0 I 339 s otoGar3.GL873618 4264902 33 + 7922563 AATACTTAGCTAAACCTTACAAATTGAGGCAAG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33130963 33 - 38964690 GTTCATTATTTAAATGTTATGGATGAAAAAGAC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 802309 32 - 1116856 GTTAATTAGCT-AACATTACAAATAATGGCAAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9439926 500 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I a score=10028.000000 s hg38.chr12_KI270834v1_alt 34737 1 + 119498 A s panTro5.chr12 127321064 1 + 137163284 A i panTro5.chr12 C 0 C 0 s panPan2.chr12 125671889 1 + 135337776 A i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8185269 1 - 8369578 A i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97833148 1 + 106955855 A i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123957539 1 + 133663169 A i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128205040 1 + 137757926 G i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10605111 1 - 16319837 A i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12227385 1 + 20526591 A i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119200220 1 + 128539186 A i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 520626 1 + 6255621 A i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4575817 1 - 8658521 A i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114781769 1 + 124281992 g i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 424303 1 - 9212255 a i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2839630 1 + 4466143 A i cebCap1.NW_016107484v1 C 0 I 330 s otoGar3.GL873618 4264935 1 + 7922563 A i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33130996 1 - 38964690 A i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 802341 1 - 1116856 A i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9439926 500 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e aotNan1.NW_018491581v1 1541463 339 + 5364348 I a score=10035.000000 s hg38.chr12_KI270834v1_alt 34738 1 + 119498 C s panTro5.chr12 127321065 1 + 137163284 C i panTro5.chr12 C 0 C 0 s panPan2.chr12 125671890 1 + 135337776 C i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8185270 1 - 8369578 C i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97833149 1 + 106955855 C i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123957540 1 + 133663169 C i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128205041 1 + 137757926 C i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10605112 1 - 16319837 C i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12227386 1 + 20526591 C i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119200221 1 + 128539186 C i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 520627 1 + 6255621 C i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4575818 1 - 8658521 C i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114781770 1 + 124281992 c i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 424304 1 - 9212255 c i saiBol1.JH378194 C 0 C 0 s otoGar3.GL873618 4264936 1 + 7922563 C i otoGar3.GL873618 C 0 I 4 s dasNov3.JH568189 802342 1 - 1116856 T i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9439926 500 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e canFam3.chr26 33130997 1 - 38964690 I e aotNan1.NW_018491581v1 1541463 339 + 5364348 I e cebCap1.NW_016107484v1 2839631 330 + 4466143 I a score=16793.000000 s hg38.chr12_KI270834v1_alt 34739 2 + 119498 TA s panTro5.chr12 127321066 2 + 137163284 TA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125671891 2 + 135337776 TA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8185271 2 - 8369578 TA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97833150 2 + 106955855 TA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123957541 2 + 133663169 TA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128205042 2 + 137757926 TA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10605113 2 - 16319837 TA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12227387 2 + 20526591 TA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119200222 2 + 128539186 TA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 520628 2 + 6255621 TA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4575819 2 - 8658521 TA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114781771 2 + 124281992 cg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 424305 2 - 9212255 cc i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1541802 2 + 5364348 TA i aotNan1.NW_018491581v1 I 339 C 0 s otoGar3.GL873618 4264941 2 + 7922563 TA i otoGar3.GL873618 I 4 C 0 s canFam3.chr26 33130998 2 - 38964690 TG i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 802343 2 - 1116856 TA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9439926 500 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e cebCap1.NW_016107484v1 2839631 330 + 4466143 I a score=87332.000000 s hg38.chr12_KI270834v1_alt 34741 9 + 119498 TACATTGTA----- s panTro5.chr12 127321068 9 + 137163284 TACATTGTA----- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125671893 9 + 135337776 TACATTGTA----- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8185273 9 - 8369578 TACATTGTA----- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97833152 9 + 106955855 TACATTGTA----- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123957543 9 + 133663169 TACATTGTA----- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128205044 9 + 137757926 TACATTGTA----- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10605115 9 - 16319837 TACATTGTA----- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12227389 9 + 20526591 TACATTGTA----- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119200224 9 + 128539186 TACATTGTA----- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 520630 9 + 6255621 TACATTGTA----- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4575821 9 - 8658521 TACATTGTA----- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114781773 9 + 124281992 ggcatggtg----- i calJac3.chr9 C 0 I 313 s saiBol1.JH378194 424307 9 - 9212255 ggcatggtg----- i saiBol1.JH378194 C 0 I 324 s cebCap1.NW_016107484v1 2839961 9 + 4466143 TACATTGCA----- i cebCap1.NW_016107484v1 I 330 C 0 s aotNan1.NW_018491581v1 1541804 9 + 5364348 TACATTGTA----- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4264943 9 + 7922563 GATATTGTA----- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33131000 7 - 38964690 --TATAGTA----- i canFam3.chr26 C 0 I 5 s dasNov3.JH568189 802345 14 - 1116856 AATATAGTATTGCA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9439926 500 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I a score=1010473.000000 s hg38.chr12_KI270834v1_alt 34750 100 + 119498 GCTTCATGCTTGGATTTCAACAGACTTAGAGTCCAGTCTTGGAGGCTGTGCTTCGGAAGTGCGCAGT-CCAAtcttagtgctttt-tatgtgtgacc----tcagt s panTro5.chr12 127321077 100 + 137163284 GCTTCATGCTTGGATTTCAACAGACTTAGAGTCCAGTCTTGGAGGCTGTGCTTCGGAAGTGCGCAGT-CCAAtcttactgctttt-catgtgtgacc----tcagt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125671902 100 + 135337776 GCTTCATGCTTGGATTTCAACAGACTTAGAGTCCAGTCTTGGAGGCTGTGCTTCGGAAGTGCACAGT-CCAAtcttactgctttt-catgtgtgacc----tcagt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8185282 100 - 8369578 GCTTCATGCTTGGATTTCAACAGACTTAGAGTCCAGTCTTGGAGGCTGTGCTTCGGAAGTGCGCAGT-CCAAtcttagtgctttt-catgtgtgacc----tcagt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97833161 100 + 106955855 GCTTCATGCTTGGATTTCAACAGACTTAGAGTCCAGTCCTGGAGGCTGTGCTTCagaagttcacagt-ccaatcttagtgctttt-tatgtgtgact----tcagt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123957552 100 + 133663169 GCTTCATGCTTGGATTTCAGCAGACTTGGAGTTCAATCCTGGAGGCTGTGCTTCGGAAGTGAGCAGT-CCAGtcttagtgctttt-tacgtgtgacc----tcagt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128205053 100 + 137757926 GCTTCATGCTTGGATTTCAGCAGACTTGGAGTTCAATCCTGGAGGCTGTGCTTCGGAAGTGAGCAGT-CCAGtcttagtgctttt-tacgtgtgacc----tcagt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10605124 100 - 16319837 GCTTCATGCTTGGATTTCAGCAGACTTGGAGTTCAATCCTGGAGGCTGTGCTTCGGAAGTGAGCAGT-CCAGtcttagtgctttt-tacgtgtgacc----tcagt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12227398 100 + 20526591 GCTTCATGCTTGGATTTCAGCAGACTTGGAGTTCAATCCTGGAGGCTGTGCTTCGGAAGTGAGCAGT-CCAGtcttagtgctttt-tacgtgtgacc----tcagt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119200233 100 + 128539186 GCTTCATGCTTGGATTTCAGCAGACTTGGAGTTCAATCCTGGAGGCTGTGCTTCGGAAGCGAGTAGT-CCAGtcttagtgctttt-tacgtgtgacc----tcagt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 520639 100 + 6255621 GCTTCATGCTTGGATTTCAGCAGACTTGGAGTTCAATCCTGGAGGCTGTGCTTCGGAAGTGAGCAGT-CCAGCcttagtgctttt-tacgtgtgacc----tcagt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4575830 100 - 8658521 GCTTCATGCTTGGATTTCAGCAGACTTAGAGTTCAATCCTGGAGGCTGTGCTTCGGAAGTGAGCAGT-CCAGtcttagtgctttt-tacgcgtgacc----tcagt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114782095 98 + 124281992 GCTTTGTGCTTGGATTTCAACAGACTTAGAATGGAATCCTGGAGGCTGTGCTTAGGAAGTGCAGTGT-CCAAtcttagtgctttt-tatgtgtgaa------ctgt i calJac3.chr9 I 313 C 0 s saiBol1.JH378194 424640 98 - 9212255 GCTTCGTGCTTGGATTTCAACAGACTTAGAATGGAAACCCAGAGGCTGTGCTTAGGAAGTGCGGTGT-CCAAtcttagtgctttg-tatgtgtgag------cagt i saiBol1.JH378194 I 324 C 0 s cebCap1.NW_016107484v1 2839970 98 + 4466143 GCTTCATGCTTGGATTTCAGCAGACTCAGAATGGAATCCTGGAGGCTGTGCTTAGGAAGTGCAGTGT-CCAAtcttagtgctttg-tgtatgtgaa------cagt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1541813 98 + 5364348 GCTTCGTGCTTGGATTTCAACAGACTTAGAATCGAATCCTGGAGGCTGTGCTTAGGAAGTGCAGTGT-CCAAtcttagtgctttg-tatgtgtgaa------cagt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4264952 88 + 7922563 GCTTT----------------AGACATAGAGTCCAGTCCTAGGGGCTCTgcctatgacgtggcaggt-accaacttagtgctctt-tgtgtatgactccagtcagt i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33131012 98 - 38964690 GTTTCATTAATGGATGCCCACAGAATTAGAGACAGATGTCAAGGGCCCTGTTCACAAAGTGCCAGGT-GCAAtcttagt--tctc-tatgtgttatc----tctgt i canFam3.chr26 I 5 C 0 s dasNov3.JH568189 802359 105 - 1116856 GTGCCATGCTTGAACTTAAACAGCCCTGGACTCAAATCA-AGAGGCTCTgcttatgaaaggccaggtgcccttctcagagctcttacatgtatcacctgcatcagc i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9439926 500 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I a score=1983291.000000 s hg38.chr12_KI270834v1_alt 34850 187 + 119498 tgtctt-agtgatgcaatgtggtaggtaccgggattgttcccagcttaccacagaggaaactgaggcctagaaaaggtcagaaatgtggcccaaggccaGGG-ATTTGGCCCTGATCTGTGTGACTC-TAAGTTCTCAAACACAGCCGCCAT--CAAGCTG-CCTGATCACCACGTTCTATGGCAAGGTAAGT s panTro5.chr12 127321177 187 + 137163284 cgtctt-agtgatgcaatgtggtatgtaccaggattgttcccagcttaccacagaggaaactgaggcctagaaaaggtcagaaatgtggcccaaggccaGGG-ATTTGGCCCTGATCTGTGTGACTC-TAAGTTCTCAAACACAGCCGCCAT--CAAGCTG-CCTGATCACCACGTTCTATGGCAAGGTAAGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125672002 187 + 135337776 cgtctt-agtgatgcaatgtggtatgtaccaggattgttcccagcttaccacagaggaaactgaggcctagaaaaggtcagaaatgtggcccaaggccaGGG-ATTTGGCCCTGATCTGTGTGACTC-TAAGTTCTCAAACACAGCCGCCAT--CGAGCTG-CCTGATCACCACGTTCTATGGCAAGGTAAGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8185382 187 - 8369578 cgtctt-attgatgcaatttggtgcgtaccaggattgttcccagcttaccacagaggaaactgaggcctagaaaaggtcagaaatgtggcccaaggccaGGG-ATTTGGCCCTGATCTGTGTGACTC-TAAGTTCTCAAACACAGCCGCCAT--CAAGCTG-CCTGATCACCACGTTCTATGGCAAGGTAAGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97833261 188 + 106955855 cttctt-agtgatgcaatgtggtacgtaccaggattgttcccagcttaccacggaggaaactgaggcctagaaaaggtcagaaatgtgccccaaggccaggg-atttgaccctgatctgtgtgactcttaagtccTCAAACACAGCCGCCAT--CAAGCTG-CCTGATCACCATGTTCTATGGCAAGGTAAGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123957652 187 + 133663169 cttctt-agtgatgcaatgtgctaggtaccgggattgttcccagcttaccacagaggaaactgaggcctagaaaagatcagaaacgtgccccaaggccaggg-atttaaccctgatctgtgtgactc-taaGTCCTCAAACACAGCCGCCAT--CAAGCTG-CCTGGTCACCATGTTCTATGGCAAGGTAAGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128205153 187 + 137757926 cttctt-agtgatgcaatgtgctaggtaccgggattgttcccagcttaccacagaggaaactgaggcctagaaaagatcagaaacgtgccccaaggccaggg-atttaaccctgatctgtgtgactc-taagtccTCAAACACAGCCGCCAT--CAAGCTG-CCTGGTCACCATGTTCTATGGCAAGGTAAGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10605224 187 - 16319837 cttctt-agtgatgcaatgtgctaggtaccgggattgttcccagcttaccacagaggaaactgaggcctagaaaagatcagaaacgtgccccaaggccaggg-atttaaccctgatctgtgtgactc-taaGTCCTCAAACACAGCCGCCAT--CAAGCTG-CCTGGTCACCATGTTCTATGGCAAGGTAAGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12227498 187 + 20526591 cttctt-agtgatgcaatgtgctaggtaccgggattgttcccagcttaccacagaggaaactgaggcctagaaaagatcagaaacgtgccccaaggccaggg-atttgaccctgatctgtgtgactc-taaGTCCTCAAACACAGCTGCCGT--CAAGCTG-CCTGGTCACCATGTTCTATGGCAAGGTAAGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119200333 188 + 128539186 cttctt-agtgatgcaatgtgctaggtactgggattgttcccagcttaccacagaggaaactgaggcctagaaaagatcagaaacgtgccccaaggccaGGG-ATTTGACCCTGATCTGTGTGACTCTTAAGTCCTCAAACACAGCTGCCAT--CAAGCTG-CCTGGTCACCATGTTCTATGGCAAGGTAAGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 520739 187 + 6255621 cttctt-agtgatgcaatgtgctaggtaccgggattgttcccagcttaccacagaggaaactgaggcctagaaaagatcagaaacatgccccaaggccaggg-atttgaccctgatctgtgtgactc-taaGTCCTCAAACACAGCTGCCGT--CAAGCTG-CCTGGTCACCATGTTCTATGGCAAGGTAAGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4575930 187 - 8658521 cttctt-agtgatacaatgtgctaggtaccgggattgttcccagcttaccacagaggaaactgaggcctagaaaagatcagaaacgtgccccaaggccaggg-atttgaccctgatctgtgtgactc-taaGTCCTCAAACACAGCCGCCAT--CAAGCTG-CCTGGTCACCATGTTCTATGGCAAGGTAAGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114782193 185 + 124281992 cttctt-agtgatgcagtgtggtaggtaccgggattgttcccaggttaccatggagaaaactgaggcctgg-aagggccagaaacgtgccccaaggccaGGG-ATTTGACCCTGCTCTGTGTGACTC-TAAGTACTCAAATACAGCTGCTGT--CAAGCT--CCTGGTCACCGTGTTCTCTGGCAAGATAAGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 424738 184 - 9212255 cttctt-agcgatgcagtgcggtaggtaccgggattgtt-ccaggttaccacggagaaaactgaggcctag-aagggccgcaaacgtgccccagtgtcgggg-atttgaccctgatctgtgtgactc-taaGTCCTCAAATGTAGCCACTGT--CAAGCT--CCTGGTCACCATGTTCTCTGGCTAGGTAAGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2840068 175 + 4466143 cttctt-agcgatgcagtgcggtgggtaccgggattgttcccaggttaccacggagaaaactgaggcctag-aagggccagaaacgtgccccaggGCCTGGG-ATTTGACCCTGATTTGTGTGACTC-T----------ATACAGCCGCTGT--CAAGCT--CCTGGTCACCATGTTCTCTGGCAAGGTAAGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1541911 185 + 5364348 cttctt-agcgatgcagtgcagtaggtaccgggattgttcccaggttaccacagagaaaactgaggcctag-aggggccagaaacgtgccccaaggccaggg-atttgaccctgatctgtgtgactc-taaGTCCTCAAATACAGCCACTGT--CAAGCT--CCTGGTCACCATGTTCTCTGGCAAGGTAAGT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4265040 183 + 7922563 cctcttccacagtgtgatgtgggagatgccacatctgtccccaaattaccacagaggaacccaaggcctagaggaggcaggaaacttgccctaaggccaGAGTGTTGGACTCTGGGTGGTGTGACTC-TGAGCCCTTAAATGCAGCCACCATGCTGGGCTG-TCTGGTCACTATGCTC--------GAATAGG i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 802464 169 - 1116856 cttctc-aacagccctgtgtggcaggtactgtgattgtccccatcttactgctgaggaaactgaggcctggagaagttaagaaacttgccTCAATGCTAGCG-GTGTGGACTCGGGCTGCCTGACCT-TGAGC---------------------CAGGCTGCCCTTGTGACCATGAGACACGGCAAGACAGTT i dasNov3.JH568189 C 0 I 391 e micMur3.chr21 9439926 500 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e canFam3.chr26 33131110 0 - 38964690 C a score=1230412.000000 s hg38.chr12_KI270834v1_alt 35037 127 + 119498 CAAGGAAAGGTAGCAAAGGGCCATGGAAAGTGCAGGAATGCCCTCCTGAGCCACGGCTTTCC-ATCTGTAGACGTGGTTGATGGTGCCCTGATGACATCACCACATGCCATGGCAAAGGCCAAGTGAG s panTro5.chr12 127321364 127 + 137163284 CAAGGAAAGGTAGCAAAGTGCCATGGAAAGTGCAGGAATGCCCTCCTGAGCCACGGCTTTCC-ATCTGTAGACGTGGCTGATGGTGCCCTGATGACATCACCACATGCCATGGCAAAGGCCAAGTGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125672189 127 + 135337776 CAAGGAAAGGTAGCAAAGTGCCATGGAAAGTGCAGGAATGCCCTCCTGAGCCACGGCTTTCC-ATCTGTAGACGTGGCTGATGGTGCCCTGATGACATCACCACATGCCATGGCAAAGGCCAAGTGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8185569 127 - 8369578 CAAGGAAAGGTAGCAAAGTGCCATGGAAAGTGCAGGAATGCCCTCCTGAGCCACGGCTTTCC-ATCTGTAGACGTGGCTGATGGTGCCCTGATGACATCACCACATGCCATGGCAAAGGCCAAGTGAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97833449 93 + 106955855 CAAGGAAAGGTAGCAAAGTGCCATGGAAAGTGCAG-----------------------------------GACATGGTTGACGGTGCCCTGATGACATCCCCACATGCCATGGCGAAGGCCAAGTGAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123957839 127 + 133663169 CAAAGAAAGGTAGCAAAGTGCCATGGAAAATGCAGGAATGCcctcccgagccacggttttcc-atctgtagatgtggttgatggtgccctgatgacatcaccacgtgacatggcgaaggccaagtgag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128205340 127 + 137757926 CAAAGAAAGGTAGCAAAGTGCCATGGAAAATGCAGGAATGCCCTCCCGAGCCACGGTTTTCC-ATCTGTAGACGTGGTTGATGGTGCCCTGATGACATCACCACGTGACATGGCGAAGGCCAAGTGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10605411 127 - 16319837 CAAAGAAAGGTAGCAAAGTGCCATGGAAAATGGAGGAATGCcctcccgagccacagttttcc-atctgtagacgtggttgatggtgccctgatgacatcaccacgtgacatggcgaaggccaagtgag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12227685 127 + 20526591 CAAAGAAAGGTAGCAAAGTGCCATGAAAAATGCAGGAATGCcctcccgagccacggttttcc-atctgtagacgtggttgatggtgccctgatgacatcaccacgtgccatggcaaaggccaagtgag i cerAty1.NW_012001186v1 C 0 I 25 s chlSab2.chr11 119200521 127 + 128539186 CAAAGAAAGGTAGCAAAGTGCCATGGAAAATGCAGGAATGCCCTCCCGAGCCACGGTTTTCC-ATCTGTAGGCGTGGTTGATGGTGCCCTGATGACATCACCACGTGCCATGGCAAAGGCCAAGTGAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 520926 127 + 6255621 CAAAGAAAGGTAGCAAAGTGCCATGGAAAATGCAGGAATGCcctcccgagccacagttttcc-atctgtagacgtggttgatggtgccctgatgacatcaccacgtgacatggcgaaggccaagtgag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4576117 127 - 8658521 CAAAGAAAGGTAGCAAAGTGCCATGGAAAATGCAGGAATGCCCTCCCGAGCCACGGTTTTCC-ATCTGTAGACGTGGTTGATGGTGCCCTGATGACATCACCACGTGCCATGGCGAAGGCCGAGTGAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114782378 127 + 124281992 CAAGGAAAGGTAGCAAAGTGCCATGGAGCGTGCAGGCGTGGCCCCCTGAGCCCCAGCTTTCC-ATCTGTACATGTGGTTAATGGTGCCCAGATGACGTCACCTTGTGCTGTGGCCGGGGCCAAGTGAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 424922 127 - 9212255 CAAGGAAAGGTAGCAAAGTGCTGTGGAGTGTGCAGGCGTGCCCTCCTGAGCCACAGCTTTCC-ATCTGTAGATGTGATTGATGGTGCCCCGATGACGTCACCTCATATCATGGCTGGGGCCAAGTGAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2840243 126 + 4466143 CAAGGAAAGGTAGCAAAGTGCTGTGGAGCGTGCAGGCGTGCCCTCCTGAGCCATAGCTTTCC-ATCTGTAGATGTGGTTCATGGTGCCCC-ATGACGTCACCTCGTGCCATGGCCGGGGCCACGTGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1542096 127 + 5364348 CAAGGAAAGATAGCAAAGTGCCGTGGAGCGTGCAGGCGTGCCCTCCTGAGCCACAGCTTTCC-ATCTGTTGATGTGGGTAATGGTGCCCCGATGACGTCACCTCATGCCATGGCCGGGGCCAAGTGAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4265223 121 + 7922563 CAAGGAAAGGTAGCAAAGTGCCGTGGAGAATCCTGGGA------CCTGAGTAAGGACTTTCCTACCTATAGACATTGCTGGCATTGCTCTGCTGACCTTATCACATGCTGTGGTAAGGGCCAC-TGAA i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9439926 500 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 802633 391 - 1116856 I e canFam3.chr26 33131110 0 - 38964690 C a score=88082.000000 s hg38.chr12_KI270834v1_alt 35164 9 + 119498 GCCAAGTAC s panTro5.chr12 127321491 9 + 137163284 GCCAAGTAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125672316 9 + 135337776 GCCAAGTAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8185696 9 - 8369578 GCCAAGTAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97833542 9 + 106955855 GCCAAGTAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123957966 9 + 133663169 gccaagtac i rheMac8.chr11 C 0 I 27 s macFas5.chr11 128205467 9 + 137757926 GCCAAGTAC i macFas5.chr11 C 0 I 27 s macNem1.NW_012010578v1 10605538 9 - 16319837 gccaagtac i macNem1.NW_012010578v1 C 0 I 27 s chlSab2.chr11 119200648 9 + 128539186 GCCAAGTAC i chlSab2.chr11 C 0 I 27 s manLeu1.NW_012103587v1 521053 9 + 6255621 gccaagtac i manLeu1.NW_012103587v1 C 0 I 27 s colAng1.NW_012116043v1 4576244 9 - 8658521 GCCAAGTAC i colAng1.NW_012116043v1 C 0 I 27 s calJac3.chr9 114782505 9 + 124281992 GCCAAGTAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 425049 9 - 9212255 GTCAAGTAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2840369 9 + 4466143 GCCAAGTAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1542223 9 + 5364348 GCCAAGTAA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4265344 9 + 7922563 GCCAAGTGT i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9439926 500 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 802633 391 - 1116856 I e canFam3.chr26 33131110 0 - 38964690 C e cerAty1.NW_012001186v1 12227812 25 + 20526591 I a score=566659.000000 s hg38.chr12_KI270834v1_alt 35173 62 + 119498 AGAAATGCTCTGAG-----GGTGTGTAAGGTAAAAAGCTTTTA--------GTTGGTCCTATAATATCTCTTTGC s panTro5.chr12 127321500 62 + 137163284 AGAAATGCTCTGAG-----GGTGTGTAAGGTAAAAAGCTTTTA--------GTTGGTCCTATAATATCTCTTTGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125672325 62 + 135337776 AGAAATGCTCTGAG-----GGTGTGTAAGGTAAAAAGCTTTTA--------GTTGGTCCTATAATATCTCTTTGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8185705 62 - 8369578 AGAAATGCTCTGAG-----GGTGTGTAAGGTAAAAAGCTTTTA--------GTTGGTCCTATAATATCTCTTTGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97833551 62 + 106955855 AGAAATGCTCTGAG-----GGTGTGTAAGGTAAAAAGCTTTTA--------GTTGGTCCTATAATATCTCTTTGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123958002 61 + 133663169 ataaatgCTCTGAG-----GGTGTGTAAGGTAAAAAGCTTTTA--------GTTGGTCCTATAATATCTCTTTG- i rheMac8.chr11 I 27 C 0 s macFas5.chr11 128205503 61 + 137757926 ATAAATGCTCTGAG-----GGTGTGTAAGGTAAAAAGCTTTTA--------GTTGGTCCTATAATATCTCTTTG- i macFas5.chr11 I 27 C 0 s macNem1.NW_012010578v1 10605574 61 - 16319837 ataaatgCTCTGAG-----GGTGTGTAAGGTAAAAAGCTTTTA--------GTTGGTCCTATAATATCTCTTTG- i macNem1.NW_012010578v1 I 27 C 0 s cerAty1.NW_012001186v1 12227837 61 + 20526591 ataaatgctCTGAG-----GGTGTGTAAGGTAAAAAGCTTTTA--------GTTGGTCCTATAATATCTCTTTG- i cerAty1.NW_012001186v1 I 25 C 0 s chlSab2.chr11 119200684 61 + 128539186 ATAAATGCTCTTAG-----GGTGTGTAAGGTAAAAAGCTTTTA--------GTTGGTCCTATAATATCTCTTTG- i chlSab2.chr11 I 27 C 0 s manLeu1.NW_012103587v1 521089 61 + 6255621 ataaatgCTCTGAG-----GGTGTGTAAGGTAAAAAGCTTTTA--------GTTGGTCCTATAATATCTCTTTG- i manLeu1.NW_012103587v1 I 27 C 0 s colAng1.NW_012116043v1 4576280 61 - 8658521 ATAAATGCTCTGAG-----GGTGTGTAAGGTAAAAAGCTTTTA--------GTTGGTCCTATAATATCTCTTTG- i colAng1.NW_012116043v1 I 27 C 0 s calJac3.chr9 114782514 65 + 124281992 GAAAAGGCTCTGGG--CGGGGGGTGTCAGGTAAAAAGCTTTTA--------GTGAGTCCTGTAATATCTTTTTGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 425058 67 - 9212255 GGAAAGGCTTGGGGGTGGGGGAGTGTCAGGTAAAAAGCTTTTA--------GTTGGTCCTATAATATCTCTTTGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2840378 63 + 4466143 GGAAAGGCTCTGGG----GTGGGTGTCAGGTAAAAAGCTTTTA--------GTTGGTCCTATAATATCTCTTTGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1542232 61 + 5364348 GGAAAAGCTCTGGG------GGGTGTCATGTAAAAAGCTTTTA--------GTCAGTCCTATAATATCTCTTTGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4265353 68 + 7922563 AGAAACACACTGTG-----GGTGCACCATAGGAAAAGGTTTTATCATAATTGTTG--CCTGTGATATGTCCTGGG i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9439926 500 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 802633 391 - 1116856 I e canFam3.chr26 33131110 0 - 38964690 C a score=729899.000000 s hg38.chr12_KI270834v1_alt 35235 60 + 119498 TAAACTCAGGAATGGTTCTGATTTTATGTTCTAATCAAATCCCATTAATAATAAATAAAA s panTro5.chr12 127321562 60 + 137163284 TAAACTCAGGAATGGTTCTGATTTTATGTTCTAATCAAATCCCATTAATAATAAATAAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125672387 60 + 135337776 TAAACTCAGGAATGGTTCTGATTTTATGTTCTAATCAAATCCCATTAATAATAAATAAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8185767 60 - 8369578 TAAACTCAGGAATGGTTCTGATTTTATGTTCTAATCAAATCCCATTAATAATAAATAAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97833613 60 + 106955855 TAAACTCAGGAATGGTTCTGATTTTATGTTCTAATCAAATCCCATTAATAATAAATAAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123958063 60 + 133663169 TAAACGCAGGAATGGTTCTGATTTTATGTTCTAATCAAATCCCATTAATAATAAATAAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128205564 60 + 137757926 TAAACGCAGGAATGGTTCTGATTTTATGTTCTAATCAAATCCCATTAATAATAAATAAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10605635 60 - 16319837 TAAACGCAGGAATGGTTCTGATTTTATGTTCTAATCAAATCCCATTAATAATAAATAAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12227898 60 + 20526591 TAAATGCAGGAATGGTTCCGATTTTATGTTCTAATCAAATCTCATTAATAATAAATAAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119200745 60 + 128539186 TAAACGCAGGAATGGTTCCGATTTTATGTTCTAATCAAATCCCATTAATAATAAATAAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 521150 60 + 6255621 TAAATGCAGGAATGGTTCTGATTTTATGTTCTAATCAAATCCCATTAATAATAAATAAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4576341 60 - 8658521 TAAACGCAGGAATGGTTCTAATTTTATGTTCTAATCAAATCCCATTAATAATAAATAAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114782579 60 + 124281992 TAATCTCAGGAATGGTTCTCATTTTATGTTCTAATCAAATCCCATTAATAATAAATAAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 425125 60 - 9212255 TAAACTCAGGAATGGTTCTGATTTTATGTTCTAATCAAATCCCATTAATAATAAATAAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2840441 60 + 4466143 TAAACTCAGGAATGGTTCTGATTTTATGTTCTAATCAAATCCCATTAATAATAAATAAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1542293 60 + 5364348 TAAACTCAGGAATGGTTCTGATTTTATGTTCTAATCAAATCCCATTAATAATAAATAAAA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9440426 60 - 31815103 TAAACTCAGGAACAGTCCTGATTTTATGTTCTAGTCAAATCCCATTAATAATAAATAAAA i micMur3.chr21 I 500 I 5899 s otoGar3.GL873618 4265421 39 + 7922563 TCAGCTTAGGAACAGTCCTGA-TTAATGTT-----------CCATTAATAA--------- i otoGar3.GL873618 C 0 C 0 e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 802633 391 - 1116856 I e canFam3.chr26 33131110 0 - 38964690 C a score=896714.000000 s hg38.chr12_KI270834v1_alt 35295 86 + 119498 TCCTTAAATAACAAGAGTCCAAAGTCCCAACTCATGGCTTTTAAAACA---GCTTCTTAGCGCTTTTCCCctgattctggatgaaccca s panTro5.chr12 127321622 86 + 137163284 TCCTTAAATAACCAGAGTCCAAAATCCCAACTCATGGCTTTTAAAACA---GCTTCTTAGCACTTTTCCCctgattctggatgaaccca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125672447 86 + 135337776 TCCTTAAATAACCAGAGTCCAAAGTCCCAACTCATGGCTTTTAAAACA---GCTTCTTAGCACTTTTCCCctgattctggatgaaccca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8185827 86 - 8369578 TCCTTAAATAACAAGAGTCCAAAGTCCCAACTCATGGCTTTTAAAACA---GCTTCTTAGCGcttttcccctgattctggatgaaccca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97833673 86 + 106955855 TCCCTAAATAACAAGAGTCCAAAGTTCTGACTCACGGCTTTTAAAACA---GCTTCTTAGCGCTTTTCCCctcattctggatgaaccca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123958123 86 + 133663169 TCCTTAAATAACAAGAGTCCAAAGTCCCGACTCATGGCTTTAAAAACA---GCTTCTTAGCActtttcccctggttctggatgaaccca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128205624 86 + 137757926 TCCTTAAATAACAAGAGTCCAAAGTCCCGACTCATGGCTTTAAAAACA---GCTTCTTAGCACTTTTCCCctggttctggatgaaccca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10605695 86 - 16319837 TCCTTAAATAACAAGAGTCCAAAGTCCCGACTCATGGCTTTAAAAACA---GCTTCTTAGCActtttcccctggttctggatgaaccca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12227958 86 + 20526591 TCCTTAAATAACAAGAGTCCAAAGTCCCGGCTCATGGCTTTAAAAACA---GCTTCTTAGCACTTTTCCCctgattctggatgaaccca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119200805 86 + 128539186 TCCTTAAATAACAAGAGTCCAAAGTCCTGGCTCGTGGCTTTAAAAACA---GCTTCTTAGCACTTTTCCCctgattctggatgaaccca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 521210 86 + 6255621 TCCTTAAATAACAAGAGTCCAAAGTCCCGACTCATGGCTTTAAAAACA---GCTTCTTAGCActtttcccctgattctggatgaaccca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4576401 84 - 8658521 TCCTTAAATAACAAGAGTCCAAAGTCCCGACTCATGGCTTTAAAA--A---GCTTCTTAGCActtttcccctgattctggatgaaccca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114782639 89 + 124281992 TCCTTAAACAGCAAGAGTCCAAAGTCCCGACTCATGGCTTTTAAAACAGCTTCTTCTTAGCACTTCTCGCCGGATTCTGGATGAACTCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 425185 87 - 9212255 TCCTTAAACAACAAGAGTCCAAAGTCCCGACTCGTGGCTTTTGAAACA-CTTCTTCTGAGCGctt-tcccctgattctggatgaactca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2840501 89 + 4466143 TCCTGAAACAACAAGAGTCCGAAGTCCCGACTCATGGCTTTTAAAACAGCTGCTTCTTAGCGCTTTGCCCCTGATTCTGGACGGACTca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1542353 85 + 5364348 TCCTTAAACAACAAGAGTCCAAAGTCCCGACTCATGGCTTTTAAAACA---GCTTCTTAGCACTT-TTCCccgattctggatgaactca i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4265460 84 + 7922563 ----TAAATAACAAGAGTTTAAAGTCCCAACTAATAGCTTTAAAACAA-ACTCTTTTTAGCACTTCTCTCctgatttgggattaatcca i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 802633 391 - 1116856 I e canFam3.chr26 33131110 0 - 38964690 C a score=4333009.000000 s hg38.chr12_KI270834v1_alt 35381 413 + 119498 ggattccacgctgaattccgttgtcttg-ttt--ttggcattctttaattttgagcagttcgtcaggatttc-tttatcttttatgaccttcctgttctggaggattccaggccaaccgttttagagaatggtctcggtttgggtttgtccgctgcttcttcataattagattcaggccatggctgtttgacaggaaggctgcaggagtgatgctgtgtccttctccgcatctcatcacgggc---acatggtgttgg-ttgccctattatgggtggtgttaatcttga-ttattgggttaagg----tgccat-----tttcctctttgcagttgat-atgcaa-ctcta-gggagataacttatgactaagtaaatatcccatttctcatccaaccttcacccattcacccaatggtttggagcatctgttg s panTro5.chr12 127321708 413 + 137163284 ggattccacactgaattctgttgtcttg-ttt--ttggcattctttaattttgagcagttcgtcaggatttc-tttatcttttatggccttcttgttctggaggattccaggccaaccgttttagagaatggtctcagtttgggtttgtccgctgcttcttcataattagattcaggccatggctgtttgacaggaaggctgcaggagtgatgctgtgtccttctccgcatctcatcacgggc---acatggtgttgg-ttgccctattatgggtggtgttaatcttga-ttattgggttaagg----tgccat-----tttcctctttgcagttgat-atgcaa-ctgca-gggagataacttatgactaagtaaatatcccatttctcatccaaccttcacccattcacccaatggtttggagcatctgttg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125672533 413 + 135337776 ggattccacactgaattccgttgtcttg-ttt--ttggcattctttaattttgagcagttcgtcaggatttc-tttatcttttatgaccttcttgttctggaggattccaggccaaccgttttagagaatggtctcagtttgggtttgtccgctgcttcttcataattagattcaggccatggctgtttgacaggaaggctgcaggagtgatgctgtgtccttctccgcatctcatcacgggc---acatggtgttgg-ttgccctattatgggtggtgttaatcttga-ttattgggttaagg----tgccat-----tttcctctttgcagttgat-atgcaa-ctgta-gggagataacttatgactaagtaaatatcccatttctcatccaaccttcacccattcacccaatggtttggagcatctgttg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8185913 413 - 8369578 ggatttcacgctgagttccgttgtcttg-ttt--ttggcattctttaattttgagcagttcgtcaggatttc-tttatcttttatgaccttcttgttctggaggattccagaccaactgttttagagaatggtctcagtttgggtttgtcagctgcttcttcataattagattcaggccatggctgtttgacaggaaggctgcaggagtgatgctgtgtccttctccgcatctcatcacaggc---acatggtgttgg-ttgccctattatgggtggtgttaatcttga-ttattgggttaagg----tgccat-----tttcctctttgcagttgat-atgcaa-ctgta-gggagataacttatgactaagtaaatatctcatttctcatccaaccttcacccattcacccaatggtttggagcatctgttg i gorGor5.CYUI01015152v1 C 0 I 13 s nomLeu3.chr10 97833759 413 + 106955855 ggattccacactgaattccgttgtcttg-ctt--ttgtcattctttaattttgagcagttcctcaggatttc-tttattttttatgaccttcttgttctggaggattccaggccaactgttgtagagaatggtctcagtttgggtttgtcagttgcttcttcataattagattcaggctatggctctttgacaggaaggcggcaggagtgatgctgtgtccttctctgcatctcattgcgggc---acatggtgttgg-ttgccctattatgggtgatgttaatcttga-ttattgggttaagg----tgacat-----tttcctctttgcagttgat-atgcaa-ctgta-gggagatatcttatgactaagtaaatatcccatttctcatccagccttcacccattcacccagtgctttggagcatctgttg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123958209 408 + 133663169 tgattccacactgagttccatcatcttg-ttt--gtggcgttctttaattttgagcagttccttagga-ttc-tttatcttttatgaccttcttgttctggaggattccaggccaactgttttagagaatgatctcagtttgggtttgtcagttgcttcttcataattagattcaggctatggctctttgacaggaaggccgcaggaacgatgctgtgtccttc---gcatctcatcacgggc---acgtggtgttgg-ttgccctattatgggtggtgttaatcttga-ttattgggttaagg----tgccat-----tttcctcttcgcagttgat-atgcaa-atgta-gggagatatcttatgactaagtaaatatcccatttctcatccaaccttcacccattcacccaatggttt-gagcatctgttg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128205710 408 + 137757926 cgattccacactgagttccatcatcttg-ttt--ttggcgttctttaattttgagcagttccttagga-ttc-tttatcttttatgaccttcttgttctggaggattccaggccaactgttttagagaatgatctcagtttgggtttgtcagttgcttcttcataattagattcaggctatggctctttgacaggaaggccgcaggaacgatgctgtgtccttc---gcatctcatcacgggc---acgtggtgttgg-ttgccctattatgggtggtgttaatcttga-ttattgggttaagg----tgccat-----tttcctcttcgcagttgat-atgcaa-atgta-gggagatatcttatgactaagtaaatatcccatttctcatccaaccttcacccattcacccaatggttt-gagcatctgttg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10605781 408 - 16319837 cgattccacactgagttccatcatcttg-ttt--ttggcgttctttaattttgagcagttccttagca-ttc-tttatcttttatgaccttcttgttctggaggattccaggccaactgttttagagaatgatctcagtttgggtttgtcagttgcttcttcataattagattcaggctatggctctttgacaggaaggccgcaggaacgatgctatgtccttc---gcatctcatcacgggc---acgtggtgttgg-ttgccctattatgggtggtgttaatcttga-ttattgggttaagg----tgccat-----tttcctcttcgcagttgat-atgcaa-atgta-gggagatatcttatgactaagtaaatatcccatttctcatccaaccttcacccattcacccaatggttt-gagcatctgttg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12228044 408 + 20526591 cgatcccacactgagttccatcatcttg-ttt--ttggcattctttaattttgagcagttcctcagga-ttc-tttatcttttatgaccttcttgttctggaggattccaggccaactgttttagagaatgatctcagtttgggtttgtcagttgcttcttcataattagattcaggctatggctctttgacaggaaggctgcaggaacgatgctgtgtccttc---acatctcatcacgggc---acgtggtgttgg-ttgccctattatgggtggtgttaatcttga-ttattgggttaagg----tgccat-----tttcctcttcgcagttgat-atgcaa-atgta-gggagatatcttatgactaagtaaatatcccatttcttatccaaccttcacccactcatccaatggttt-gagcatctgttg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119200891 405 + 128539186 cgatcccacactgagttccatcatcttg-ttt--ttggcattctttaattttgagcagttcctcagga-ttc-tttatcttttatgac---cttgttctggaggattccaggccaactgttttagagaatgatctcagtttgggtttgtcagttgcttcttcataattagattcaggctatggctctttgacaggaaggctgcaggaacgatgctgtgtccttc---gcatctcatcacgggc---acgtggtgttgg-ttgccctattatgggtggtgttaatcttga-ttattgggttaagg----tgccat-----tttcctcttcgcagttgat-atgcaa-atgta-gggagatatcttatgactaagtaaatatcccatttcttatccaaccttcacccactcacccaatggttt-gagcatctgttg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 521296 408 + 6255621 cgatcccacactgagttccatcatcttg-ttt--ttggcgttctttaattttgagcagttcctcagga-ttc-tttatcttttatgaccttcttgttctggaggattccaggccaactgttttagagaatgatctcagtttgggtttgtcagttgcttcttcataattagattcaggctatggctgtttgacaggaaggctgcaggaacgatgctgtgtccttc---gtatctcatcacgggc---acgtggtgttgg-ttgccctgttatgggtggtgttaatcttga-tttttgggttaagg----tgccat-----tttcctctttgcagttgat-atgcaa-atgta-gggagatatcttatgactaagtaaatatcccatttcttatccaaccttcacccattcacccaatggttt-gagcatctgttg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4576485 402 - 8658521 cgattccacactgagttccatcatcttg-ttt--ttggccttctttaattttgagcagttcctcagga-ttc-tttatcttttatgaccttcttgttctggaggattccaggccaactgttttagagaatgatctcagtttgggtttgtcagttgcttcttcataattagattcaggctatggctctttgacaggaaggctgcaggaacgatgctgtgtccttc---gcatctcatcctgggc---acgtggtgttgg-ttgccctattatgggtggtgttaatcttga-ttattgggttaagg----tgccat-----tttcctcttcgcagttgat-atgcaa-atgtaggggagatatcttatgaataagtaa-------atttctcatccacccttcacccattcacccaatggttt-gagcatctgttg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114782728 393 + 124281992 GGACTCCACTCTGAGTTCCAttgtcttg-ttc--ttggcagtctttcattttgagcagttcctcaggatttc-tttatcttttatga---tcttgttctggaagattccagacccgccgttctagagaatgctctcggtttgggcttgtgagttgcttcttcgtgattagatt---------cctccttgacaggaaggccgtaggactggtac---gtccgcc---gcacctcatcac-ggc---acatggtgttgg-ctgccctattatgggtgctgttaatcttga-ttattgggttaagg----tgCCAT-----TTTCCTCTTTGCAGTTGAT-ATGGAA-CTGGA-AGGAGACATCTTATGACCAAGTAAACACCCCATTTCTCATCCAGCCTTCACCCATTCACCCAGTGGTTC-GAGCATCTATTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 425272 410 - 9212255 ggattccacactgagtccctttgtcttgtttc--atggcagtctttaattttgagcagttccttaggatttc-tttatcttttatgactttcttgttctggaagattccggaccagccgttccagagaatgctgtcagtttgggtttgtcagttgcttcttcgtgattagattcaggctacgcctctttgacaggaaggccatgggactggtgctgtgtcctct---gcatcttatcac-ggc---acatggtgttgg-ttgccctgttatgggtggtggtaatcttgatttattgggtaaagg----tgctgt-----tttcctctttgcaattgat-atgcaa-ctgta-aggaaatatcttatgactaagtaaataccccatttctcatccagccttcacccattcacccagtggttt-gagcagctattg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2840590 410 + 4466143 gggttccacacggagtccccttgtcttgtttc--ttgtcagtctttaattttgagcagttccttaggatttcttttatcttttgtgaccttcttgttctggaagattccggaccagccgttctagagaatgctctccgtttgggtttgtcagttgcttcttcgtgattagattcaggctacgcctctttgacaggaaggccgtaggactggtgctgtgtcctcc---gcatctcatcac-ggc---acatggtgttgg-ttgccctgttatgggtggtggtactcttga-ttattgggttaagg----tgctgt-----tttcctctttgcagttgat-atgcaa-ctgta-gggagctctcttatgactaagtaaataccccatttctcatccagccttcacccattcacccagtggttt-gagcatctattg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1542438 409 + 5364348 agattccacactgagttccgttgtcttgtttc--ttggcagtctttaatttcgcgcagttcctcaggatttc-tttatcttttatgaccttcttgttctggaagattccggaccagccattctggagaacgccctcagtttgggtttgccagttgcttcttcgcgattagattcagggtacgcctctttgacaggaaggccgtaggactggggctgtgttctcc---gcatctcatcac-ggc---acatggtgttgg-ttgccctattatgggtggtgttaatcttga-ttattgggttaagg----tgccat-----tttcctctttgcagttgat-atgcaa-ctgta-gggagatatcttatgactaagtaaataccccatttctcatccagccttcacccattgacccactggttt-gagcatctattg i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4265544 394 + 7922563 gtatctcatgttgagtttaggtattatg---t--ctggggtccttcagttttgagcagtttctcaagatttc-tttgtctcctataaccttggtgtactagaggatttcagatca-----cttatagaatggtctcagcttgggtttgtcagatgcttcttcaccattagattcaggctgggcctttttaacaggaatgatgcaggagtgatg---tgtccttcacagcacctgattggagga---cattggt------ttgcctcattattggtggttttcactttgg-ttattgggtgaagg----tgccacttcagtttcccctttgcagctgac-atgcaatctgta-gtgagataccctatgactatgtaaatataccatttttcataaaaatttcac--------ccaatggttt-gagcatctatt- i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 803024 403 - 1116856 ggatt---CACtgcattcatttgtcctg-tcccattggcttcctctaatctcgagcag--------aatttc-ttagtccttcctggcctt-gtgttttggaaccatccagtctggccacttaatagaatgccttcagtttggatttgtctgatgcttccctatgattagatttgggctatgcatctttggcaggaatcacacaaaatttcccatgtgtccacagt-gagttttatcagaagctttatctgatgctggtttattcctttattggtgagattgactttgc-tcctctagttaaggcatctgccat-----tttttcctttgcaattgataatgcaatctgtg-gggaaagaccctaagactatgcaaatatcctgttccttatcaggacttcac--------tcagtggttt-tggcatctattg i dasNov3.JH568189 I 391 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e canFam3.chr26 33131110 0 - 38964690 C a score=83567.000000 s hg38.chr12_KI270834v1_alt 35794 9 + 119498 atggttact s panTro5.chr12 127322121 9 + 137163284 atggttact i panTro5.chr12 C 0 C 0 s panPan2.chr12 125672946 9 + 135337776 atggttact i panPan2.chr12 C 0 C 0 s nomLeu3.chr10 97834172 9 + 106955855 atggttact i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123958617 9 + 133663169 atggttgct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128206118 9 + 137757926 atggttgct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10606189 9 - 16319837 atggttgct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12228452 9 + 20526591 atggttgct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119201296 9 + 128539186 atggttgct i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 521704 9 + 6255621 atggttgct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4576887 9 - 8658521 atggttgct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114783121 9 + 124281992 ATGGTTGCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 425682 9 - 9212255 atggTTGCG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2841000 9 + 4466143 atggttgct i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1542847 9 + 5364348 atggttgct i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 803427 9 - 1116856 atgatatcc i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e canFam3.chr26 33131110 0 - 38964690 C e otoGar3.GL873618 4265938 0 + 7922563 C e gorGor5.CYUI01015152v1 8186326 13 - 8369578 I a score=87128.000000 s hg38.chr12_KI270834v1_alt 35803 7 + 119498 tgaatcT s panTro5.chr12 127322130 7 + 137163284 tgaatcT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125672955 7 + 135337776 tgaatcT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8186339 7 - 8369578 TGAATCT i gorGor5.CYUI01015152v1 I 13 C 0 s nomLeu3.chr10 97834181 7 + 106955855 tgaatct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123958626 7 + 133663169 tgaatcT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128206127 7 + 137757926 tgaatcT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10606198 7 - 16319837 tgAATCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12228461 7 + 20526591 tgaatcT i cerAty1.NW_012001186v1 C 0 I 684 s chlSab2.chr11 119201305 7 + 128539186 tgaatcT i chlSab2.chr11 C 0 I 1180 s manLeu1.NW_012103587v1 521713 7 + 6255621 tgaatct i manLeu1.NW_012103587v1 C 0 I 457 s colAng1.NW_012116043v1 4576896 7 - 8658521 tgaatct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114783130 7 + 124281992 TGAATCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 425691 7 - 9212255 CGAATCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2841009 7 + 4466143 tgAATCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1542856 7 + 5364348 tgaatcT i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 803436 7 - 1116856 tgaatct i dasNov3.JH568189 C 0 I 21 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e canFam3.chr26 33131110 0 - 38964690 C e otoGar3.GL873618 4265938 0 + 7922563 C a score=16785.000000 s hg38.chr12_KI270834v1_alt 35810 4 + 119498 GGTC s panTro5.chr12 127322137 4 + 137163284 GGtc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125672962 4 + 135337776 GGtc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8186346 4 - 8369578 GGtc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97834188 4 + 106955855 cctc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123958633 4 + 133663169 AGTC i rheMac8.chr11 C 0 I 134 s macFas5.chr11 128206134 4 + 137757926 AGTC i macFas5.chr11 C 0 I 18 s macNem1.NW_012010578v1 10606205 4 - 16319837 AGTC i macNem1.NW_012010578v1 C 0 I 18 s colAng1.NW_012116043v1 4576903 4 - 8658521 aGTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114783137 4 + 124281992 AGTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 425698 4 - 9212255 AGTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2841016 4 + 4466143 AGTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1542863 4 + 5364348 AGTC i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 803443 21 - 1116856 I e canFam3.chr26 33131110 0 - 38964690 C e otoGar3.GL873618 4265938 0 + 7922563 C e manLeu1.NW_012103587v1 521720 457 + 6255621 I e chlSab2.chr11 119201312 1180 + 128539186 I e cerAty1.NW_012001186v1 12228468 684 + 20526591 I a score=126.000000 s hg38.chr12_KI270834v1_alt 35814 1 + 119498 A s panTro5.chr12 127322141 1 + 137163284 a i panTro5.chr12 C 0 C 0 s panPan2.chr12 125672966 1 + 135337776 a i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8186350 1 - 8369578 a i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97834192 1 + 106955855 c i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128206156 1 + 137757926 G i macFas5.chr11 I 18 I 118 s macNem1.NW_012010578v1 10606227 1 - 16319837 G i macNem1.NW_012010578v1 I 18 I 64 s colAng1.NW_012116043v1 4576907 1 - 8658521 A i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114783141 1 + 124281992 G i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 425702 1 - 9212255 G i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2841020 1 + 4466143 G i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1542867 1 + 5364348 A i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 803443 21 - 1116856 I e canFam3.chr26 33131110 0 - 38964690 C e otoGar3.GL873618 4265938 0 + 7922563 C e manLeu1.NW_012103587v1 521720 457 + 6255621 I e chlSab2.chr11 119201312 1180 + 128539186 I e cerAty1.NW_012001186v1 12228468 684 + 20526591 I e rheMac8.chr11 123958637 134 + 133663169 I a score=14898.000000 s hg38.chr12_KI270834v1_alt 35815 2 + 119498 tc s panTro5.chr12 127322142 2 + 137163284 tc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125672967 2 + 135337776 tc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8186351 2 - 8369578 tc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97834193 2 + 106955855 tc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123958771 2 + 133663169 tc i rheMac8.chr11 I 134 C 0 s macFas5.chr11 128206275 2 + 137757926 tc i macFas5.chr11 I 118 C 0 s macNem1.NW_012010578v1 10606292 2 - 16319837 tc i macNem1.NW_012010578v1 I 64 C 0 s colAng1.NW_012116043v1 4576908 2 - 8658521 TC i colAng1.NW_012116043v1 C 0 I 489 s calJac3.chr9 114783142 2 + 124281992 TC i calJac3.chr9 C 0 I 3 s saiBol1.JH378194 425703 2 - 9212255 TC i saiBol1.JH378194 C 0 I 3 s cebCap1.NW_016107484v1 2841021 2 + 4466143 TC i cebCap1.NW_016107484v1 C 0 I 3 s aotNan1.NW_018491581v1 1542868 2 + 5364348 TC i aotNan1.NW_018491581v1 C 0 I 3 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 803443 21 - 1116856 I e canFam3.chr26 33131110 0 - 38964690 C e otoGar3.GL873618 4265938 0 + 7922563 C e manLeu1.NW_012103587v1 521720 457 + 6255621 I e chlSab2.chr11 119201312 1180 + 128539186 I e cerAty1.NW_012001186v1 12228468 684 + 20526591 I a score=148965.000000 s hg38.chr12_KI270834v1_alt 35817 88 + 119498 ctcctcctcctcctc-------------------------ctccttctccttcttcttctcctcctcctcttcctcTTCTTGttcttctttcttcttt-tctttttttttgaga s panTro5.chr12 127322144 108 + 137163284 ctcctcctcctcctcctcc----ccctcctcctcctccctctccttcttcttcttcttctcctcctcctcttcctcttcttgttcttctttcttcttt-tc-ttttttttgaga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125672969 111 + 135337776 ctcctcctcctcctcctccccctccctcctcctcctccctctccttcttcttcttcttctcctcctcctcttcctcttcttgttcttctttcttcttt-c--ttttttttgaga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8186353 99 - 8369578 ctcctcctcctcctc-------------ctcctcctcctcctccttctccttcttcttctcctcctcctcttcctcttcttgttcttctttcttcttt-tc-ttttttttgaga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97834195 80 + 106955855 ctcctcctcctcctc-------------------------ctcctcctcctccccctccccctcctcctcctcctc--------ctTCtttcttcttc-tttttttttttgaga i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123958773 88 + 133663169 ctccttctcctcctc----------------------ctcctcctccttcttcttcttctcctcctcctccttctcctccttctccttctccttcttc-ttattcttcttc--- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128206277 88 + 137757926 ctccttctcctcctc----------------------ctcctcctccttcttcttcttctcctcctcctccttctcctccttctccttcttcttcttc-ttcttcttcttc--- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10606294 76 - 16319837 ctccttctcctcctc----------------------ctcctcctc------------ctccttctcctccttctcctccttctccttctccttcttc-ttattcttcttc--- i macNem1.NW_012010578v1 C 0 C 0 s calJac3.chr9 114783147 58 + 124281992 GTCATTGTCTTCTTC-------------------------T------TCCTCCTCACCTTCC----------------------TCttcttcttttt--tc-ttttttttgaga i calJac3.chr9 I 3 C 0 s saiBol1.JH378194 425708 66 - 9212255 GTCATCGTCTCCTTC-------------------------TTCCTCCTCCTCCTCACCTTCC----------------------TCttcttcttttttatt-ttttttttgaga i saiBol1.JH378194 I 3 C 0 s cebCap1.NW_016107484v1 2841026 83 + 4466143 GTCATTGtcttcttc-------------------------ttcctcctcctcctcaccttcctcctcctcctcctcttct----tcttcttcttcttt-tt-ttttttttggga i cebCap1.NW_016107484v1 I 3 C 0 s aotNan1.NW_018491581v1 1542873 71 + 5364348 Gtcatcatcttcttc--------------------------------ttctcctcaccctcctcttctttcttcc---------tcttcttttttttt-tt-ttttttttgagg i aotNan1.NW_018491581v1 I 3 C 0 s otoGar3.GL873618 4265938 13 + 7922563 -----------------------------------------------------------------------------------------------------tttttttttaaga i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 803443 21 - 1116856 I e canFam3.chr26 33131110 0 - 38964690 C e colAng1.NW_012116043v1 4576910 489 - 8658521 I e manLeu1.NW_012103587v1 521720 457 + 6255621 I e chlSab2.chr11 119201312 1180 + 128539186 I e cerAty1.NW_012001186v1 12228468 684 + 20526591 I a score=2602587.000000 s hg38.chr12_KI270834v1_alt 35905 301 + 119498 -ggggtcgtgctctgttgcccaggcta-agttcagtcacatgatcacggctcactgcagcctcaaa--ctcctgggctcaagcaatcctcccacctcagccttc----caggtggctgggactgcaggtgcatgtcaccatgcccagctaatttttgc--ttttttttgtagagacagagtctcc---ctgtactgcccaggcttgtcttgaactcctgggcccaaggaatcctcctgcctc-----------------agccaactacagtgctgagatta-caggtgtgagccaccatgcctggccGTTGAGTCCTTTTATAGTGAATAT- s panTro5.chr12 127322252 301 + 137163284 -ggggtcatgctctgttgcccaggcta-agtgcagtgacatgatcacggctcactgcagcctcaaa--ctcctgggctcaagcaatcctcccacctcagccttc----caggtggctgggactgcaggtgcatgtcaccatgcccagctaatttttgc--ttttttttgtagagacagagtctcc---ctgtactgcccaggcttgtcttgaactcctgggcccaaggaatcctcctgcctc-----------------agccaactacagtgctgagatta-caggtgtgagccaccatgcctggccGTTGAGTCCTTTTATAGTGAATAT- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125673080 303 + 135337776 -ggggtcatgctctgttgcccaggcta-agtgcagtgacatgatcacggctcactgcagcctcaaa--ctcctgggctcaagcaatcctcccacctcagccttc----caggtggctgggactgcaggtgcatgtcaccatgcccagctaatttttgcttttttttttgtagagacagagtctcc---ctgtactgcccaggcttgtcttgaactcctgggcccaaggaatcctcctgcctc-----------------agccaactacagtgctgagatta-caggtgtgagccaccatgcctggccGTTGAGTCCTTTTATAGTGAATAT- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8186452 302 - 8369578 -ggggtcatgctctgttgcccaggcta-agtgcagtgacatgatcacggctcactgcagcctcaaa--ctcctgggctcaagcaatcctcccacctcagccttc----caggtggctgggactgcaggtgcatgtcaccatgcccagctaatttttgc-tttttttttgtagagacagagtctcc---ctgtactgcccaggcttgtcttgaactcctgggcccaaggaatcctcctgcctc-----------------agccaactacagtgctgagatta-caggtgtgagccaccatgcctggccGTTGAGTCCTTTTATAGTGAATAT- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97834275 292 + 106955855 -ggggtcgtgcgct-ttgcccaggcta-ag-gcaatgccatgatcagggttcactgcagctc--aa--ctcctgggctcaagcaatcctcc--actcagc--tt----caggtggctgggactgcaggtgcatgtcaccatgcccagctaatttttgc---tttttttgtagagacacagtctcc---ctgtactgcccgggcttgtcttgaactcctgggcccaagaaattctcctacctc-----------------agccaactacagtgctgagatta-caggtgtgagccaccacgcctggccTTTGAGTCCTTTTATAGTGAATAT- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123958861 300 + 133663169 -ggggtcatgctctgttgcccaggcta-agtgcagtgacatgatcactgcttactgcagcctcgaa--ctcccaggctcaagcaatcctcccaccttagccttc----caagtgactgggactacaggtgcatgtcaccacgcccagctaatttctgc---tttttttgtagagacagagtctcc---ctgtactggccaggcttgtcttgaactcctgggctcaaggaattctcctgcctc-----------------agtctcctacagtgctgagatta-taggggtgagccaccatgcctggccTTTGAGTCTTCTTATAATGAAtat- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128206365 300 + 137757926 -ggggtcatgctctgttgcccaggcta-agtgcagtgacatgatcactgcttactgcagcctcgaa--ctcccaggctcaagcaatcctcccaccttagccttc----caagtgactgggactacaggtgcatgtcaccacgcccagctaatttctgc---tttttttgtagagacagagtctcc---ctgtactggccaggcttgtcttgaactcctgggctcaaggaattctcctgcctc-----------------agtctcctacagtgctgagatta-taggggtgagccaccacgcctggccTTTGAGTCTTCTTATAATGAAtat- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10606370 301 - 16319837 -ggggtcatgctctgttgcccaggcta-agtgcagtgacatgatcactgcttactgcagcctcgaa--ctcccaggctcaagcaatcctcccaccttagccttc----caagtgactgggactacaggtgcatgtcaccacgcccagctaatttctgc--ttttttttgtagagacagagtctcc---ctgtactggccaggcttgtcttgaactcctgggctcaaggaattctcctgcctc-----------------agtctcctacagtgctgagatta-taggggtgagccaccacgcctggccTTTGAGTCTTCTTATAATGAAtat- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12229152 295 + 20526591 -Ggggtcatgctctgttgcccaggcta-agtgcagtgacatgattactgctcactgcagcctcgaa--ctcccaggcttaagcaatcctcccacctcagccttc----caagtgactgggactacaggtgcatgtcaccatgcct-----atttttgc---tttttttgtagagacagagtctcc---ctgtactgcccaggcttgtcttgaactcctgggctcaagggattctcctgcctc-----------------agtctcctacagtgctgagatta-caggggtgagccaccacgcctggccTTTGAGTCCTCTTATAATGAAtat- i cerAty1.NW_012001186v1 I 684 C 0 s manLeu1.NW_012103587v1 522177 313 + 6255621 -Ggggtcatgctctgttgcccaggcta-agtgcagtgacatgattactgctcactgcagcctcgaa--ctcccaggctcaagcaatcctcccacctcagccttc----caagtgactgggactacaggtgcatgtcaccatgcct-----atttttgc---tttttttgtagagacagagtctcc---ctgtactgcccaggcttgtcttgaactcctgggctcaagggattctcctgcctcagtctcctacagtgctgagtctcctacagtgctgagatcaccaggggtgagccaccacgcctggccTTTGAGTCCTCTTATAATGAAtat- i manLeu1.NW_012103587v1 I 457 C 0 s colAng1.NW_012116043v1 4577399 297 - 8658521 -Ggggtcatgctctgttgcccaggcta-agtgcagtgacatgatcactgcttactgcagcctcgaa--ctcccaggctcaagcaatcttcccaccttagccttc----caagtgactgggactacaggtgcatgtcaccatgcccagctaatttttgc---tttttttgtagagacagagtctcc---ctgtactggccaggcttgtcttgaactcctgggctcaagggattctcctacctc-----------------agtctcctacag---tgagatta-caggggtgagccaccacgcctggccTTTGAGTCTTCTTATAATGAAtat- i colAng1.NW_012116043v1 I 489 C 0 s calJac3.chr9 114783205 306 + 124281992 -ggggtcatactctgttgcccaggcta-agtgcagaggcatgatcatggttcactgcagccttgaa--ctcctgggctcaagcagtcctctcacctcacccttccactcgagtggttgtgactacaggtgcatgccaccatgcccagataatttttac---cttttttgtagagacagggtctctacaagttactgcccagacttgtcttgaactcctgggctcaagggatctttctgcctc-----------------ggcctcct-aagtgctgagatta-caggtgtgagccaccacgcctggccTTTGAGTCTTCTTATAATGAATGT- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 425774 300 - 9212255 -ggggtcatactctgttgcctaagcta-cgtacagaggcataatcatggttcactgcagccttgaa--ctgccgggctcaagcagtcctctcacctcactcttc----cgagtggttgtgactacaggtacatgtcaccatgcccagataatttttgc---tttttttgtagagacagggtctcc---cattactgtccagtcttgtcttgaactcatgggctccagggatctttctgcctc-----------------agcctcctaaagtgctgagatta-caggtgtgagccaccatgcctggccTTTGAGTCTTCTTATAATGAACGT- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2841109 300 + 4466143 -ggggtcatactctgttgcccaagcta-agtgcagaggcatgatcatggttcactgcagccttgaa--ctcctgggctcaagcagacctctcacctcacttttc----tgagtgattgtgactacaggtacatgtcaccatgcccagataatttttgc---tttttttgtagagacagggtctcc---cattactgcccaggcttgtcttaagctcctgggctcaagggatctttctgcctc-----------------agcctcctaaaatgctgagatta-taggtgtgagccaccacacctggccTTTGAGTCTTCTTATAATGAATGT- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1542944 302 + 5364348 -ggggtcatactctgttgcccaggcta-agtgcagaggcatgatcatggttcactgcagccttgaactctcccgggctcaagcaatcctctcacctcacccttc----tgagtggttgtgactacaggtacatgtcaccatgcccagataatttttgc---ttttattgtagagacagggtctcc---ctgtgctgcccagccttgtcgtgaactcctgggctcaagggatctttctgcctc-----------------agcctcctaaagtgctgagatta-ccggtgtgagccaccatgcctggcctttgagtcttcttATAATGAATGT- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4265951 290 + 7922563 gatagtcttgctctattgcctgggttatagtgttgtggcacagtcatagctcactatggcttcgaa--gtcctgggctcaagtggtcttttcacttcagtcttc----tgagtagctgggactataagctcgcaccaccatgcccagctcatttttaa---attttttgtagagatcgggtctca---ctaggttgcccaggctgctcttgaactcctgaactcaagcaatccttttgtctt-----------------ggcctcccaaagtgctgggatta-ATGGC-----------TGCTTGAATCTT--GTCTTCTTACAATGAATATA i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 803443 21 - 1116856 I e canFam3.chr26 33131110 0 - 38964690 C e chlSab2.chr11 119201312 1180 + 128539186 I a score=1106550.000000 s hg38.chr12_KI270834v1_alt 36206 116 + 119498 AAATGGAGACTTTCtatagggacaactggtgaaatttgaatgtggactataca-----ttagataatagtattgtatcaatattacatttcctgagtttgataattctgctgtggttgtgt s panTro5.chr12 127322553 116 + 137163284 AAATGGAGACTTTCtatagggacaactggtgaaatttgaatgtggactatata-----ttagataatagtattgtatcaatattacatttcctgagtttgataattctgctgtggttatgt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125673383 116 + 135337776 AAATGGAGACTTTCtatagggacaactggtgaaatttgaatgtggactataca-----ttagataatagtattgtatcaatattacatttcctgagtttgataattctgctgtggttgtgt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8186754 116 - 8369578 AAATGGAGACTTTCtatagggacaactggtgaaatttgaatgtggactataca-----ttagataatagtattgtatcaatattacatttcctgagtttgacaattctgctgtggttgtgt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97834567 116 + 106955855 AAATGGAGACTTTCtatagggacaactggtgaaatttgaatgtggaatacata-----ttagataatagtattgtatcaatattaaatttcctgagtttgataattctgctgtggttgtgt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123959161 116 + 133663169 aaatggagattttctatagggacaactggtgaaatttgaatgtggattatata-----ttagataatagtattgtgtcaatattaaatttcctgagtttgataattctgctgtggttgtgt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128206665 116 + 137757926 aaatggagattttctatagggacaactggtgaaatttgaatgtggattatata-----ttagataatagtattgtgtcaatattaaatttcctgagtttgataattctgctgtggttgtgt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10606671 116 - 16319837 aaatggagattttctatagggacaactggtgaaatttgaatgtggattatata-----ttagataatagtattgtgtcaatattaaatttcctgagtttgataattctgctgtggttgtat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12229447 116 + 20526591 aaacggagattttctatagggacaactggtgaaatttgcatgtggattttata-----ttagataatagtattgtatcaatattaaatttcctgagtttgataattctgctgtagttgtgt i cerAty1.NW_012001186v1 C 0 C 0 s manLeu1.NW_012103587v1 522490 116 + 6255621 aaacggagattttctatagggacaactggtgaaatttgcatgtggattttata-----ttagataatagtattgtatcaatattaaatttcctgagtttggtaattctgctgtggttgtgt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4577696 116 - 8658521 aaatggagattttctatagggacaactggtgaaatttgaatgtggattatata-----ttagataatagtattgtatcaatattaaatttcctgagtttgataattctgctgtggttgtgt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114783511 115 + 124281992 AAATGGAGACTTTCtatagggacaactggtgacatttgaatgtggactatgta-----ttatataataata-tttatgaatattagattttctgacttgggtaattctgctctggttgtgt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 426074 115 - 9212255 AAATGGGGACTTTCtatagggacaactggtgacatttgaatgtggactatata-----ttatataataata-tgtgtcaatattagattttctgacttgggtaattctgctctggttatgt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2841409 115 + 4466143 AAATGGAGACTTTCtatagggacaactggtgacatttgaatgtggactgtata-----ttatataataata-tgtatcaatgttagattttctgacttgggtaattctgctctggttatgt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1543246 120 + 5364348 AAATGGAGACTTTCtatagggacaactggtgacatttgaatgtggactatgtaatattatatataataata-tgtgtcaatattagattttctgacttcgataattctgctctggttatgt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4266241 115 + 7922563 AAATGGAGTCTTTCTTttgggataattagtaaaatttgaatatgggctgt-ta-----ttagataatagcttagtatcgatgttaaattttctgaattttataattgtgctgaggttatat i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 803464 89 - 1116856 aaatggagattttCtgttggaacaattggtgacatttgactat-gactgcgta-----ttag----taatattgtacccatgttaaatttctt----------------------ctgtgt i dasNov3.JH568189 I 21 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e canFam3.chr26 33131110 0 - 38964690 C e chlSab2.chr11 119201312 1180 + 128539186 I a score=2362888.000000 s hg38.chr12_KI270834v1_alt 36322 235 + 119498 aagagaaggtgcttattcttaggaaatacttgcttaagtatttaggg--gaagggggcattttatctgcaattgactctcaaatgattc---------agagagagagaataa--------------------gagagagtgcgaatgtggc---aaaaaaa-cgtaacaattggggaatctgactgaaaggcatatggga---gttctt-catactgttttattctcataactctgtaagtttgaaattatttaaaaataaaaaGCTAAAAGG- s panTro5.chr12 127322669 235 + 137163284 aagagaaggtgcttattcttaggaaatacttgcttaagtatttaggg--gaagggggcattttatctgcaattgactctcaaatgattc---------agagagagagaataa--------------------gagagagtgcgaatgtggc---aaaaaaa-cgtaacaattggggaatctgactgaaaggcatatggga---gttctt-catactgttttattctcataactctgtaagtttgaaattatttaaaaataaaaaGCTAAAAAG- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125673499 235 + 135337776 aagagaaggtgcttattcttaggaaatacttgcttaagtatttaggg--gaagggggcattttatctgcaattgactctcaaatgattc---------agagagagagaataa--------------------gagagagtgcgaatgtggc---aaaaaaa-cgtaacaattggggaatctgactgaaaggcatatggga---gttctt-catactgttttattctcataactctgtaagtttgaaattatttaaaaataaaaaGCTAAAAAG- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8186870 234 - 8369578 -agagaaggtacttattcttaggaaatacttgcttaagtatttaggg--gaagggggcattttatctgcaattgactctcaaatgattc---------agagagagagaataa--------------------gagagagtgcgaatgtggc---aaaaaaa-cgtaacaattggggaatccgactgaaaggcatatgggc---gttctt-cgtactgttttattctcgtaactctgtaagtttgaaattatttaaaaataaaaaGCTAAAAAG- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97834683 238 + 106955855 aagagaaggtgcttattcttaggaaatactggcttaagtatggaggg--gaagggggcattttatctgcaattgactctcaaatgattc------a-gagagagagagaataa--------------------gagagagtgcaaatgtggc-a-aaaaaaa-tgtaacaattggggaatctgacagaaaggcatatggga---gttctt-catactattttattcttgtaactctgtaagtttgaaataatttaaaaataaaaaGCTAAAAAG- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123959277 236 + 133663169 aaaagaaggtgcttattcttaggaaatacttgcttaagtatttgggg--aagggaggcattttatctgcaattgactctcaaatgattt------a-gagagagacagagtaa--------------------gagagcgcgcaaatctggt----aaaaaa-cgtaacagtgggggaatctgactgaaaggcatgtggga---gttctt-catactattttattcttgtaactctgtaagtttgaaattatttaaaaataaaaaGCTAAAAAG- i rheMac8.chr11 C 0 I 1 s macFas5.chr11 128206781 236 + 137757926 aacagaaggtgcttattcttaggaaatacttgcttaagtatttaggg--gaaggaggcattttatctgcaattgactctcaaatgattt------a-gagagagacagagtaa--------------------gagagcgcgcaaatctggt----aaaaaa-cgtaacagtgggggaatctgactgaaaggcatatggga---gttctt-catactattttattcttgtaactctgtaagtttgaaattatttaaaaataaaaagctaaaaag- i macFas5.chr11 C 0 I 1 s macNem1.NW_012010578v1 10606787 236 - 16319837 aagagaaggtgcttattcttaggaaatacttgcttaagtatttaggg--gaaggaggcattttatctgcaattgactctcaaatgattt------a-gagagagacagagtaa--------------------gagagcgtgcaaatctggt----aaaaaa-cgtaacagtgggggaatctgactgaaaggcatatggga---gttctt-catactattttattcttgtaactctgtaagtttgaaattatttaaaaataaaaaGCTAAAAAG- i macNem1.NW_012010578v1 C 0 I 1 s cerAty1.NW_012001186v1 12229563 242 + 20526591 aagagaaggtacttattcttaggaaatacttgcttaagtatttaagg--gaaggagacattttatcagcaattgactctcaaatgattcagagaga-gagagagagagagtaa--------------------gagagagtgcaaatctggt----aaaaaa-cgtaacagtaggggaatctgactgaaaggcatatggga---gttctt-catactattttattcttgtaactctgtaagtctgaaattatttaaaaataaaaaGCTAAAAAG- i cerAty1.NW_012001186v1 C 0 I 1 s chlSab2.chr11 119202492 236 + 128539186 aagagaaggtgcttattcttaggaaatacttgcttaagtatttaagg--gaaggagacattttatctgcaattgactctcaaatgattc------a-gagagagagagagtaa--------------------gagagagcacaaatctggt----aaaaaa-cgtaacagtgggggaatctgactgaaaggcatatggga---gttctt-catactattttattcttgtaactctgtaagtctgaaattatttaaaaataaaaagctaaaaag- i chlSab2.chr11 I 1180 I 1 s manLeu1.NW_012103587v1 522606 242 + 6255621 aagagaaggtgcttattcttaggaaatacttgcttaagtatttaagg--gaaggagacattttatctacaattgactctcaaatgattcagagaga-gagagagagagagtaa--------------------gagagagcgcaaatctggt----aaaaaa-cgtaacagtgggggaatctgactgaaaggcatatggga---gttctt-catactattttattcttgtaactctgtaagtctgaaattatttaaaaataaaaaGCTAAAAAG- i manLeu1.NW_012103587v1 C 0 I 1 s colAng1.NW_012116043v1 4577812 236 - 8658521 aagagaaggtgcttattcttaggaaatacttgcttaagtatttaggg--gaaggaggcattttatctgtaattgactctcaaatgattc------a-gagagagagagagtaa--------------------gagagagcgcaaatctggt----aaaaaa-tgtaacagtaggggaatctgactgacaggcatatggga---gttctt-catactattttattcttgtaactctgtaagtttgaaattatttaaaaataaaaaGCTAAAAAG- i colAng1.NW_012116043v1 C 0 I 1 s calJac3.chr9 114783626 223 + 124281992 aagagaaagtgcttattcttatgaaatacttgctt-------taggg--gaaaggggcatttaatctgcggttga--ctctaatgattc------a-gagagagacaga------------------------atgagagtgcaaatgtgac----aaaaaa-cataacaattggggaatctggtggaaaggcatatgggg---gttctt-catactgttttattcttgtaactgtgtaagtttgaaattttttaaaaataaaaaGTTAAAAAG- i calJac3.chr9 C 0 I 1 s saiBol1.JH378194 426189 248 - 9212255 aagagaaagtgcttattcttaggaaatacttgctt-------tgggg--gaaaggggcattttatctgcaactga--ctcaagtgattc------a-gagagaaagagagagagagtgtgtgtgtgtatgtatatgagagtgcaaatgtgac----aaaaaaccataacaattggggaatctggttgaaagccatatgggg---gttctt-catactattttattcttgtaactgtgtaagtttgaaattctttaaaaataaaaagttaaaaag- i saiBol1.JH378194 C 0 I 1 s cebCap1.NW_016107484v1 2841524 240 + 4466143 aagagaaagtgcttattcttaggaaatacttgctt-------taggg--gaaaggggcattttatctgcaattgactctcaaatgattc------a-gagagagagagagagagagagagt------------atgagagtgcaaatgtgacca-aaaaaaa-cataacaattggggaatctggttaaatgccatatgggg---gttctt-catactattttattcttgtaactgtgtaagtttgaaattctttaaaaataaaaaGTTAAAAAG- i cebCap1.NW_016107484v1 C 0 I 1 s aotNan1.NW_018491581v1 1543366 225 + 5364348 aaaagaagatgcttattcttaggaaatacttgctt-------taggg--gaaaggggcattt-atctgcaatggactctcaaatgattg------a-gagagagagt--------------------------atgagagtgcaaatgtgacaa-aaaaaaa-catgacaattggagaatctggttgaaaggcatatgggg---gttctt-catactattttattcttgtaactgtgtaagtttgaaatttttaaaaaataaaaaGTTAAAAAG- i aotNan1.NW_018491581v1 C 0 I 1 s otoGar3.GL873618 4266356 243 + 7922563 aagggaaggtgcgtgttcttaggatatacatgcttgaatattta-----gaaaagggtattatgtctgccactgactctaaaataattc------acgggagacaaagattaagagagagagc----------aagagcgcgcaaatgttgcaacaaaaaaa-attaacaat-ggagaatcttgttaaaggatacatggga---gttctt-----ttgttctatttttgtaactctaaaagtttgaaattatttcaaaataaaaaGTTGAAGGG- i otoGar3.GL873618 C 0 I 302 s dasNov3.JH568189 803553 229 - 1116856 aagagaaggtgcttgttcttaggaaatacttgctgaagtatttaggaatgaaaggg----tatgcctgaaatttactgtcagatgattt------a-gagagagaaagt------------------------gcgtatgcatgaatgtggt--------aa-aataataattagaaaatctgcgtgaagaatatagagggtgtgtttttgggtgctagtctattcttattactct--aggtttgaaattatcttaaaataaaaaGCTAAAAAGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e canFam3.chr26 33131110 0 - 38964690 C a score=3408198.000000 s hg38.chr12_KI270834v1_alt 36557 322 + 119498 AAAAAAAT-ACAGGAAGGAAATAAACCAAAATGTTAATCCTGG--AAAAAAAAGAT----------CTAACTGCTTATATCAGTGAGTTAAATGGAGGCACTATCAAACCACCATTTCAGCACAGT---AGAATAGC---CTCTGTCCTGTGGAGATGGGCTTTGCTGCATGAGATGTCACCCATTATAGCCACAAAATGGAACCATCCT-GAAGCTTGAATACCTGAGGCCTTG-----GACGTAGACGTGCTGCCAGGACACATGGTGTGTAACCcagggcttgtgaactcagatgctcccagggacccagcaggtagcacaaatgagtgaagtggAGCAAATTA s panTro5.chr12 127322904 321 + 137163284 AAAAAAAT-ACGGGCAGGAAATAAACCAAAATGTTAATCCT-G--AAAAAAAAGAT----------CTAACTGCTTATATCAGTGAGTTAAATGGAGGCACTATCAAACCACCATTTCAGCACAGT---AGAATAGC---GTCTGTCCTGTGGAGATGGGCTTTGCTGCATGAGATGTCACCCATTATAGCCACAAAATGGAACCATCCT-GAAGCTTGAATACCTGAGGCCTTG-----GACGTAGACGTGCTGCCAGGACACATGGTGTGTAAACcagggcttgtgaactcagatgctcccagggacccagcaggtagcacaaatgagtgaagtggagcaaatTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125673734 320 + 135337776 -AAAAAAT-ACGGGCAGGAAATAAACCAAAATGTTAATCCT-G--AAAAAAAAGAT----------CTAACTGCTTATATCAGTGAGTTAAATGGAGGCACTATCAAACCACCATTTCAGCACAGT---AGAATAGC---GTCTGTCCTGTGGAGATGGGCTTTGCTGCATGAGATGTCACCCATTATAGCCACAAAATGGAACCATCCT-GAAGCTTGAATACCTGAGGCCTTG-----GACGTAGACGTGCTGCCAGGACACATGGTGTGTAAACcagggcttgtgaactcagatgctcccagggacccagcaggtagcacaaatgagagaagtggAGCAAATTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8187104 321 - 8369578 -AAAAAAT-ACAGGAAGGAAATAAACCAAAATGTTAATCCTGA--AAAAAAAAGAT----------CTAACTGCTTATATCAGTGAGTTAAATGGAGGCACTATCAAACCAGCATTTCAGCACAGT---AGAATAGC---CTCTGTCCTGTGGAGATGGGCTTTGCTGCATGAGATGTCACCCATTGTAGCCACAAAATGGAACCATCCT-GAAGCTTGAATACCTGAGGCCTTG-----GACGTAGACGTGCTGCCAGGACACATGGTGTATAAACcacggcttgtgaactcagatgctcccagggacccagcaggtagcacaaatgagtgaagtggAGCAAATTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97834921 321 + 106955855 AAAAAAAT-ACAGGAAGGAAATAAACCAAAATGTTAATGCT-G--AAAAAAAAAAT----------CCAACTACTTATATCAGTGAGTTAAATGGAGGCACTATCAAACCACCATTTCAGCACAGT---AGAATAGC---GTCCATCCTGTGGAGATGGGCTTTGCTGCATGAGATGTCGCCCATTATAGCCACAAAATGGAACCATCCT-TAAGCTTGAATACCTGAGGCCTTG-----GAAGTAGATGTGCTGCCAGGACACATGGTGTGTAAACcagggcgtgtgaactcagatgctcccagggaccaagcatgtagcacaaatgagcgaagtggAGCAAATTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123959514 321 + 133663169 AAAAAGAT-ATGGGAAGGAAATAAACCAAAATGTTAACGCT-G--AAAAAAAAAAT----------CCAACTACTTATATCAGTGAGTTAAATGGAGGCACTATCAAGCCACCATTTCAGCACAGT---AGAATAGC---GTCTGTCCTGTGGAGATGGGCTTCGCTGCATGAGATGTCACCCAGTATAGTCACAAAATGAAACCATCCC-GAAGCTTAAATACCTGAGGCCTTG-----GAAGTAGACGTGCTGCCAGCACGCATGGTGTGTAAACTagggcttgtaaactcagattctcccagggtcccagcaggtagcacaaatgagtgaagtggAGCAAATTA i rheMac8.chr11 I 1 C 0 s macFas5.chr11 128207018 321 + 137757926 aaaaaGAT-ATGGGAAGGAAATAAACCAAAATGTTAACGCT-G--AAAAAAAAAAT----------CCAACTACTTATATCAGTGAGTTAAATGGAGGCACTATCAAGCCACCATTTCAGCACAGT---AGAATAGC---GTCTGTCCTGTGGAGATGGGCTTCGCTGCATGAGATGTCACCCAGTATAGTCACAAAATGAAACCATCCC-GAAGCTTAAATACCTGAGGCCTTG-----GAAGTAGACGTGCTGCCAGCACGCATGGTGTGTAAACTagggcttgtaaactcagattctcccagggtcccagcaggtagcacaaatgagtgaagtggAGCAAATTA i macFas5.chr11 I 1 C 0 s macNem1.NW_012010578v1 10607024 321 - 16319837 AAAAAGAT-ATGGGAAGGAAATAAACCAAAATGTTAACGCT-G--AAAAAAAAAAT----------CCAACTACTTATATCAGTGAGTTAAATGGAGGCACTATCAAGCCACCATTTCAGCACAGT---AGAATAGC---GTCTGTCCTGTGGAGATGGGCTTCGCTGCATGAGATGTCACCCAGTATAGTCACAAAATGAAACCATCCC-GAAGCTTAAACACCTGAGGCCTTG-----GAAGTAGACGTGCTGCCAGCACGCATGGTGTGTAAACTagggcttgtaaactcagattctcccagggtcccagcaggtagcacaaatgagtgaagtggAGCAAATTA i macNem1.NW_012010578v1 I 1 C 0 s cerAty1.NW_012001186v1 12229806 321 + 20526591 AAAAAGAT-ATGGGAAGGAAATAAACCAAAATGTTAATGCT-G--AAAAAAAAAAT----------CCAGCTACTTATATCAATGAGTTAAATGCAGGCACTATCAAACCACCATTTCAGCACAGT---AGAATAGT---GTCTGTCCTGTGGAGATGGGCTTCGCTTCATGAGATGTCACCCAGTATAGCCACAAAATGAAACCATCCC-GAAGCTTGAATACCTGAGGCCTTG-----GAAGTAGACGTACTGCCAGCACACATGGTGTGTAAACcaggacttgtaaactcagattctcccagggacccagcaggtagcacaaatgagtgaaatggAGCAAATTA i cerAty1.NW_012001186v1 I 1 C 0 s chlSab2.chr11 119202729 321 + 128539186 aaaaaGAT-ATGGGAAGGAAATAAACCAAAATGTTAATGCT-G--AAAAAAAAAAT----------CCAACTACTTATATCAATGAGTTAAATGGAGGCACTATCAAACCACCATTTCAGCACAGT---AGAATAGT---GTCTGTCCTGTGGAGATGGGCTTCGCTGCATGAGATGTCACCCAGTATAGCCACAAAATGAAACCATCCC-GAAGCTTGAATACCTGAGGCCTTG-----GAAGTAGACGTGCTGCCAGCACACATGGTGTGTAAACcaggacttgtaaactcagattctcccagggacccagcaggtagcacaaatgagtgaaatggAGCAAATTA i chlSab2.chr11 I 1 C 0 s manLeu1.NW_012103587v1 522849 321 + 6255621 AAAAAGAT-ATGGGAAGGAAATAAACCAAAATGTTAATGCT-G--AAAAAAAAAAT----------CCAACTACTTATATCAATGAGTTAAATGGAGGCACTATCAAACCACCATTTCAGCACAGT---AGAATAGC---GTCTGTCCTGTGGAGATGGGCTTCGCTGCATGAGATGTCACCCAGTATAGCCACAAAATGAAAGCATCCT-GAAGCTTGAATACCTGAGGCCTTG-----GAAGTAGACGTACTGCCAGCACACATGGTGTGTAAACcaggacttgtaaactcagattctcccagggacccagcaggtagcacaaatgagtgaaatggAGCAAATTA i manLeu1.NW_012103587v1 I 1 C 0 s colAng1.NW_012116043v1 4578049 321 - 8658521 AAAAAGAT-ATGGGAAGGAAATAAACCAAAATGTTAATGCT-G--AAAAAAAAAAT----------CCAACTACTTATATTGGTGAGTTAAATGGAGGCACTATCAAACCACCATTTCAGCACAGT---AGAATAGC---GTCTGTCCTGTGGAGATGGGCTTCGCTGCATGAGATGTCACCCAGTATAGCCACAAAATGAAACCATCCC-GAAGCTCGAATACCTGAGGCCTTG-----GAAGTAGATGTGCTGCCAGCACGCATGGTGTGTAAACcagggcttgtaaactcagattcgcccagggacccagcaggtagcacaaatgagtgaagtggAGCAAATTA i colAng1.NW_012116043v1 I 1 C 0 s calJac3.chr9 114783850 324 + 124281992 AAAAAAAACACGGGAAGGAAATAAACCAAAATGTTAATGTT-GCCAAAAAAAAAAT----------TCATCTACTCATATCAGTGAGTTAAATGGAGGCACTGTCAAACTACCCTTTCGGCATAGC---AGAATAGC---GTCCATCCTGCAGAGATGGGCTTTGCTGCGTGAGATGTAAGCCATTATAGCCACAAAATGGAACCATCAT-GAAGTTTGAATACCTGAGGCCTTG-----GAAGTAGACCTGCTGCCTGGACAGATGGTGTGTCAACcagggcttgtaaactcagatgctccaagggacccagcaggtagtacaaatgagtcaagtggAGCAAACTA i calJac3.chr9 I 1 C 0 s saiBol1.JH378194 426438 333 - 9212255 aaaaaaAA-ATGGGAAGGAAATAAACCAAAATGTTAATGCT-GCCAAAAAAAACACAACAAAACAACTATCTATTCATATCAGTGAGTTAAATGGAGGCACTGTCAAACTAGCCTTTCAGCACAGC---AGAATCGC---GTCCATCCTGCAGAGATGGGCTTTGCTGCGTGAGATGTAAGCCATTATAGTCACCAAATGGAACCATCAT-GAAGTTTGAATAGCTGAGGCCTTG-----GAGGTAGACCTGCTGCCAGGACAGATGGTGTGTCAACcagggcttgtaaactcagatgctccaagggacccagcaggtagcacaaatgagtgaaatggAGCAAAGTA i saiBol1.JH378194 I 1 C 0 s cebCap1.NW_016107484v1 2841765 324 + 4466143 AAAAAAAA-ATGGGAAGGAAATAAACCAAAATGTTAATGCT-GCCAAAAAAAAAAAAAT-------CCATCTATTCATATCAGTGAGTTAAATG--GGCACTGTCAAACTACCCTTTCGGCATAGC---AGAATGGC---GTCCATCCTGCGGAGATGGGCTTTGCTGAGTGAGATGTAAGCCATTATAGCCACAAAATGGAACCGTCAT-GAAGTTTGAATACCTGAGGCCTTG-----GAAGTAGACCTGCTGCCAGGACAGATGGTGTGTCAACcagggcttgaaaactcatatgccccgagggacccagcaggtagcacaaatgagggaagtggagctaagtA i cebCap1.NW_016107484v1 I 1 C 0 s aotNan1.NW_018491581v1 1543592 325 + 5364348 GAAAAAAA-ATGGGAAGGAGATAAACCAAAATGTTAATGCT-GCCAAAAAAAAAAAAT--------CCATCTACTCATATCAGTGAGTTAAACGGAGGCACTGTCAAACCACCCATTCGGCATAGC---AGAATAGC---GTCCATCCTGTGGAGATGGGCTTTGCTGCGTCAGATGTAAGCCGTTATAGCCACAAAATGGAACCATCTT-GAAGTTTGAACACCTGAGGCCTTG-----GAAGTAGACCTGCCGCCAGGACAGATGGTGTGTCAACcagggcttgtaaactcagatgctccgagggacccagcaggtagcacaaatgagtgaagtggAGCAAAGCA i aotNan1.NW_018491581v1 I 1 C 0 s otoGar3.GL873618 4266901 287 + 7922563 gaaagaaT-ACTGGAAGAAAATAAGCCAGAATGTTAATGCT-G-----CAAAAAAT----------CTAACTGCTTATAT-AGTGAATTAAATGGAAGCAATATCAAACCACCATTCCCTCACAAC---AGAGTAACAGAGTCTGTCCATTGGGGATGGACTT----------------------TATACCCACAAAGTTGAAGCTTCAC-TTAGC-------CTTGGAGCC--------AAAGTAGACTTGCTGCGAGGACAAATGATGTGTGAACCAGTTGTTGTAGATGCAGCTGCTCCCAGGGACCCAGCAGGTAGCATAAGTGAGGGAAGTGGC-CAAATTG i otoGar3.GL873618 I 302 C 0 s dasNov3.JH568189 803782 293 - 1116856 AAAAAAAT-ATTGAAAGAAGAGAA-----AATGTTAACATT-G------AAGAAAT----------CCAACTGCTTATATAAGTGAATTA------------------------TTCCAACACCATCTGAGAATACT---GTTGGTCCTTTGGAGAAGGTCTTTGCTCT----GGTGTGAACCATCATAGCCTCATAATTGAAGGGTCATAGTAGCTTCAACATCTTAGGCTTTGAAGCCAAAGTAGAACTGCAACCAGGACAGTTGGTATACAAACcagggcttgtaaactcggatgcttccaggggccctgcagggagcatatgcaaatgaagtgagcctcatta i dasNov3.JH568189 C 0 I 4131 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e canFam3.chr26 33131110 0 - 38964690 C a score=2736798.000000 s hg38.chr12_KI270834v1_alt 36879 259 + 119498 CATGGTGgtgttagtttcctagggctgccataacaaataactgggtggcttgaaacaacagagatttattatctcatagttctggagg----------------------ccaaaagtctaaaa-agaggtgtgagcaggactgcactccctccgaaggctcta-gggcaaat----cct---cacctcttctgcttctggtggttccaggtgttccttggcttgtgaccacatcatttcaaactttgcctctttcttggc----cttcccctctgtgtgtcttatgtctcctc s panTro5.chr12 127323225 259 + 137163284 TATGGTGgtgttagtttcctagggctgccataacaaataactgggtggcttgaaacaacagagatttattatctcatagttctggagg----------------------ccaaaagtctaaaa-agaggtgtgagcaggactgcactccctccgaaggctcta-gggcaaat----cct---cacctcttctgcttctggtggttccaggtgttccttggcttgtggccacatcgtttcaaactttgcctctttcttggc----cttcccctctgtgtgtcttatgtctcctc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125674054 259 + 135337776 TATGGTGgtgttagtttcctagggctgccataacaaataactgggtggcttgaaacaacagagatttattatctcatagttctggagg----------------------ccaaaagtctaaaa-agaggtgtgagcaggactgcactccctccgaaggctcta-gggcaaat----cct---cacctcttctgcttctggtggttccaggtgttccttggcttgtggccacatcgtttcaaactttgcctctttcttggc----cttcccctctgtgtgtcttatgtctcctc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8187425 281 - 8369578 CATGGTGgtgttagtttcctagggctgccataacaaataactgtgtggcttaaaacaacagagatttattatctcatagttctggagataataagaggtctaaaaaagtctaaaaagtctaaaa-agaggtgtgagcaggactgcactccctccgaaggctcta-gggcaaat----cct---cacctcttctgcttctggtggttccgggtgttccttggcttgtggccacatcatttcaaactttgcctctttcttggc----cttcccctctgtgtgtcttatgtctcctc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97835242 259 + 106955855 CGTGGTGgtgttagtttcttagggctgccataacaaataactgggtggcttaaaacaacagagatttattatctcacagttctggagg----------------------ccaaaagtctaaaa-agaggtgtgagcaggactgcactccctccaaaggctcta-gggcaaat----cct---cgcctcttctacttctggtggttccaggtgttccttggcttgtggccacgtcgtttcaatctttgcctctttcttggc----cttcccttctgcgtatctcatgcctcctc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123959835 259 + 133663169 CATGGTGgtgttagcttcctagggctgccataacaaataactgggtggcttaaagcaacagacatttattatctcacaattctggagg----------------------ccaaaagtctaaaa-agaggtgtgagcaggactgcactccctccaaaggctcta-gggcaaat----cct---tgcctcttctgcttctggtggttccaggtgttccttggcttgtggccacatcatttcaacctttgcctctgtcttggc----cttcccctctgcgtgtctcatgtctcctc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128207339 259 + 137757926 CATGGTGgtgttagcttcctagggctgccataacaaataactgggtggcttaaagcaacagacatttattatctcacaattctggagg----------------------ccaaaagtctaaaa-agaggtgtgagcaggactgcactccctccaaaggctcta-gggcaaat----cct---tgcctcttctgcttctggtggttccaggtgttccttggcttgtggccacatcatttcaacctttgcctctgtcttggc----cttcccctctgcgtgtctcatgtctcctc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10607345 259 - 16319837 CATGGTGgtgttagcttcctagggctgccataacaaataactgggtggcttaaagcaacagacatttattatctcacaattctggagg----------------------ccaaaagtctaaaa-agaggtgtgagcaggactgcactccctccaaaggctcta-gggcaaat----cct---tgcctcttctgcttctggtggttccaggtgttccttggcttgtggccacatcatttcaacctttgcctctgtcttggc----cttcccctctgcgtgtctcatgtctcctc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12230127 259 + 20526591 CATGGTGgtgttagcttactagggctgccataacaaataactgggtggcttaaagcaaccgacatttattatctcacaattctggagg----------------------ccaaaagtctaaaa-agaggtgtgagcaggactgcactccctccaaaggctcta-gggcaaat----cct---cacctcttctgcttctggtggttccaggtgttccttggcttgtggccacatcattttaatctttgcctctgtcttggc----cttcccctctgcgtgtctcatgtctcctc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119203050 259 + 128539186 CATGGTGgtgttagcttactagggctgccataacaaataactgggtggcttaaagcaaccgacatttattatctcacagttctggagg----------------------ccaaaagtctaaaa-agaggtgtgagcaggactgcactccctccaaaggctctg-gggcaaat----cct---cacctcttctgcttctggtggttccaggtgttccttggcttgtggccacatcatttcaatctttgcctctgtcttggc----cttcccctctgcgtgtctcatgtctcctc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 523170 259 + 6255621 CATGGTGgtgttagcttactagggctgccataacaaataactgggtggcttaaagcaaccgacatttattatctcacaattctggagg----------------------ccaaaagtctgaaa-agaggtgtgagcaggactgcactccctccaaaggctcta-gggcaaat----cct---tgcctcttctgcttctggtggttccaggtgttccttggcttgtggccacatcattttaatctttgcctctgtcttggc----cttcccctctgcgtgtctcatgtctcctc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4578370 259 - 8658521 CATGGTGgtgttagcttcctagggccgccataacaaataactgggtggcttaaagcaacagacatttattatctcacaattctggagg----------------------ccaaaagtctaaaa-agaggtgtgagcaggactgcactccctccgaaggctcta-gggcaaat----cct---cacctcttctgcttctggtggttccaggtgttccttggcttgtggccacatcatttcaatctttgcctctgtcttggc----cttcccctctgcgtgtctcatgtctcctc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114784174 263 + 124281992 CATGGTGTtattagttccctagggctgccatgacaaataactgggtggcttaaaatagcagagatttattatctcacagctctggagg----------------------ccaaaagtctaaaa-agaggtgtgggcaggactgcactccctctgaaggctcta-gggtgaatcctccct---cgcctctgccacttctggtggtgccaggtgttccttggcttgtggccacatcgtttgagtctttgcctctgtcttggc----cttcccctttgcctgtctcacatctcttc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 426771 263 - 9212255 CATGGTATtattagtttcctagggctgccatgacaaataactgggtggcttaaaacggcagagatttattatctcactcttccggagg----------------------ccaaaagtctaaaa-agaggtgtgggcaggactgcactccctccgaaagctcta-gggcaaatcctccct---cgcctcttccacttctggtggtgccaggtgttccttggcttgtggctgcatcatttgagtctttgcttctgtcttggc----catcccctttgcctgtctcacatctcttc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2842089 262 + 4466143 CGTGGTGTtattagtttcctagggctgccatgacaaataact-ggtggcttaaaacagcagagatttattatctcacagttccagagg----------------------ccaaaagtctaaaa-agaggtgtgggcaggactgcactccctccgaaggctcta-gggcgaatcctccct---cgcctcttccacttctggtggtgccaggtgttccttggcttgtggccacatcatttgagtctttgcctctgtcttggc----cttcccctttgcctgtctcacatctcttc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1543917 263 + 5364348 CGTGGTGTtattagtttcctagggctgccatgacaaataactgggtggcttaaaacagcagagatttattatctcactgttctggagg----------------------ccaaaagtctaaaa-agaggtgtgggcaggactgcactccctccgaaggctcta-gggcgaatcctccct---cgcctcttccacttctggtggtgtcagttgttccttggctagtggccacatcatttgagtctttgcctctgtcttggc----cctcccctttgcctgtctcacatctcttc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4267188 248 + 7922563 GATGGta-tattagtttcctaaggctgtcgtaac------------------tagaaatagaaatttattctctaatagttttaaagg----------------------ccaaaagtctgacataaaggtgttggcagggcctcactccttctgaagcctccaggggcaaat----ccttcctgccttctctggcttctgtagctccaggtg-tccttggtttgtggccatatcactttgatctctgcctctgtcttcacatggcctcttccctatgtgtctcaaatctcccT i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 804075 4131 - 1116856 I e canFam3.chr26 33131110 0 - 38964690 C a score=116909.000000 s hg38.chr12_KI270834v1_alt 37138 10 + 119498 ctgctt-------------ttct---- s panTro5.chr12 127323484 10 + 137163284 ctgctt-------------ttct---- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125674313 10 + 135337776 ctgctt-------------ttct---- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8187706 10 - 8369578 ctgctt-------------ttct---- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97835501 10 + 106955855 ctgctt-------------ttct---- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123960094 10 + 133663169 ctgctt-------------ttct---- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128207598 10 + 137757926 ctgctt-------------ttct---- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10607604 10 - 16319837 ctgctt-------------ttct---- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12230386 10 + 20526591 ctgctt-------------ttct---- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119203309 10 + 128539186 ctgctt-------------ttct---- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 523429 10 + 6255621 ctgctt-------------ttct---- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4578629 10 - 8658521 ctgctt-------------ttct---- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114784437 10 + 124281992 ctgctt-------------ttct---- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 427034 10 - 9212255 ctgctt-------------ttct---- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2842351 10 + 4466143 ctgctt-------------ttct---- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1544180 10 + 5364348 ctgctt-------------ttct---- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4267436 10 + 7922563 CTGCTT-------------TGCT---- i otoGar3.GL873618 C 0 I 30 s canFam3.chr26 33131110 27 - 38964690 ctgctcaactgggaggaaattctcccc i canFam3.chr26 C 0 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 804075 4131 - 1116856 I a score=4884112.000000 s hg38.chr12_KI270834v1_alt 37148 501 + 119498 cttataaggacatttgtcattagattaggactcatctgtataatccagaatggtcacatcttgagatccttaattgcgtttgcaaaggcctt-----tctccaaacaaggtca-cagtcacagcttctgggtgaacacatcttttggt-ggggggtgggtacca-ttcgacccactacaCATGGACATCCAAAATACTTT-CTTTATTCTTGACTGTACCAC-AGGAAACCAGGGGTTAAAACCAGTGATAAATAGCAATTGATACTCAGCCTcag-atgtaagagaagaatgaggt---------aggagttgtggcaggggcagggactatgacactttctgtcttcatgggcagccactactcagcatcagctgattgttcccacga----aggaatccaggtctgtgtgctcagaacttccagcttgcccaagaagtgagaaattcagatttttgtgtgaagttccctcattcttaaatattggcaaagaactcaaa---Cttttttttctt---tttttttttttt s panTro5.chr12 127323494 504 + 137163284 cttataaggacatttgtcattagattaggactcatctgtataatccagaatggtcacatcttgagatccttaattgcgtttgcaaaggcctt-----tctccaaacaaggtca-cagtcacagcttctgggtgaacacatcttttggt-ggggggtgggtacca-ttcgacccactacacatggatatccaaaatacttt-ctttattcttgactgtaccac-aggaaaccaggggttaaaaccagtgataaatagcagttgatactcagcctcag-atgtaagagaagaatgaggt---------aggagttgtggcaggggcagggactatgacactttctgtcttcatgggcagccactactcagcatcagctgattgttcccacga----aggaatccaggtctgcgtgctcagaacttccagcttgcccaagaagtgagaaattcagatttttgtgtgaagttccctcattcttaaatattggcaaataactcaaa---ctttcttttcttttctttttttttttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125674323 504 + 135337776 cttataaggacatttgtcattagattaggactcatctgtataatccagaatggtcacatcttgagatccttaattgcgtttgcaaaggcctt-----tctccaaacaaggtca-cagtcacagcttctgggtgaacacatcttttggt-ggggggtgggtacca-ttcgacccactacacatggatatccaaaatacttt-ctttattcttgactgtaccac-aggaaaccaggggttaaaaccagtgataaatagcagttgatactcagcctcag-atgtaagagaagaatgaggt---------aggagttgtggcaggggcagggactatgacactttctgtcttcatgggcagccactactcagcatcagctgattgttcccacga----aggaatccaggtctgcgtgctcagaacttccagcttgcccaagaagtgagaaattcagatttttgtgtgaagttccctcattcttaaatattggcaaataactcaaa---cttttttttcttttcttttttcttttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8187716 498 - 8369578 cttataaggacatttgtcattagattaggactcatctgtataatccagaatggtcacatcttgagatccttaattgcgtttgcaaaggcctt-----tctccaaacaaggtca-cagtcacagcttctgggtgaacacatcttttggtgggggggtgggtacca-ttcgacccactacacatggatatccaaaatacttt-ctttattcttgactgtaccac-aggaaaccaggggttaaaaccagtgataaatagcaattgatactcagcctcag-atgtaagagaagaatgaggt---------aggagttgtggcgggggcagggactatgacactttctgtcttcatgggcagccactactcagcatcagctgattgtt-ccacga----aggaatccaggtctgtgtgctcagaacttccagcttgcccaagaagtgagaaattcagatttttgtgtgaagttccctcattcttaaatattggcaaagaactcaaa---Cttttttttctt------ttttttttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97835511 493 + 106955855 cttataaggacatttgtcatt--attaggactcatctgtataatccagaatgatcacatcttgagatccttaattacatctgcaaaggcctc-----tctccaaacaaggtca-cagtcacagcttctgggtgaacacatcttttggt-gggggatgggtacca-ttcgacccactacaCATGGATATCCAAAATACTTT-CTTTGTTCTTGACTGTACCTC-AGGAAACCAGCGGTTAAAACCAGTGATAAATAGCAATTGATACTCAGCCTcag-atgtaagagaagaatgaggt---------aggagttgtggcagtggcagggactatgacactttctgtctccatgggcagccactactcagcatcagcagattgttcccacga----aggaatccaggtctgtgtgctcagaacttccagcttgcccaagaagtgagaaattcagatttttgtgtgaagttccctcattcttaaatattggcaactaactcaaa---CCttttttt---------ttttttttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123960104 483 + 133663169 cttataagggcatttgtcattagattagtactcatctgtataagccagaatgatcgcatcttgagatccttaattacatctgcaaaggcctt-----tctccaaacaaggtcaccagtcacagcttctgggtgaacacatcttttggt-ggggggtgggtacca-ttcgacccactacacatggatatccaaaatacttt-ctttactcttgactgtaccgc-aggaaaccaggggttaaaaccagtgat-aatagcaattgatactcagcctcag-gtgtaag---agaatgaggt---------aggcgttgtggcaggggcagggactatgacactttctgtctccataggcagccactcctcagcatcagcagattgttcccatga----aggaatccaggtctgtgtgctcagaacttccagtttgcccaagaagtgagaaattcagatttttgtgtgaagttcccttattcttaaatattggcaactaactcaaa---Cttcttttt------------------ i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128207608 499 + 137757926 cttataagggcatttgtcattagattaggactcatctgtataagccagaatgatcgcatcttgagatccttaattacatctgcaaaggcctt-----tctccaaacaaggtcaccagtcacagcttctgggtgaacacatcttttggt-ggggggtgggtacca-ttcgacccactacaCATGGATATCCAAAATACTTT-CTTTACTCTTGACTGTACCAC-AGGAAACCAGGGGTTAAAACCAGTGATCAATAGCAATTGATACTCAGCCTCAG-GTGTAAG---AGAATGAGGT---------AGGCGTTGTGGCAGGGGCAGGGACTATGACACTTTCTGTCTCCATAggcagccactcctcagcatcagcagattgttcccatga----aggaatccaggtctgtgtgctcagaacttccagtttgcccaagaagtgagaaattcagatttttgtgtgaagttccctcattcttaaatattggcaactaactcaaa---Cttctttttttt---tttttttttttt i macFas5.chr11 C 0 I 106 s macNem1.NW_012010578v1 10607614 499 - 16319837 cttataagggcatttgtcattagattaggactcatctgtataagccagaatgatcgcatcttgagatccttaattacatctgcaaaggcctt-----tctccaaacaaggtcaccagtcacagcttctgggtgaacacatcttttggt-ggggggtgggtacca-ttcgacccactacacatggatatccaaaatacttt-ctttactcttgactgtaccac-aggaaaccaggggttaaaaccagtgatcaatagcaattgatactcagcctcag-gtgtaag---agaatgagtt---------aggcgttgtggcaggggcagggactatgacactttctgtctccataggcagccactcctcagcatcagcagattgttcccatga----aggaatccaggtctgtgtgctcagaacttccagtttgcccaagaagtgagaaattcagatttttgtgtgaagttccctcattcttaaatattggcaactaactcaaa---CTTCtttttttt---tttttttttttt i macNem1.NW_012010578v1 C 0 I 3 s cerAty1.NW_012001186v1 12230396 487 + 20526591 cttataagggcatttgtcattagattaggactcatctgcataagccagaatgatcgcatcttgagatcctgaattacatctgcaaaggcctt-----tctccagacaaggtcaccagtcacagcttctgggtgaacacatcttttgat-ggggagtgggtacca-ttcgacccactacacatggatatccaaaatacttt-ctttactcttgactgtaccac-aggaaatcaggggttaaaaccagtgatcaatagcaattgatactcagcctcag-gtgtaag---agaatgaggt---------aggcgttgtggcaggggcagggactatgatactttctgtctccatgggcagccactcctcagcatcagcagattggtcccatga----aggaatccaggtctgtgtgctcagaacttccagtttgcccaagaagtgagaaattcagatttttgtgtgaagttccctcattcttaaatattggcaattaactcaaa---Cttttttttttt--------------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119203319 488 + 128539186 cttataaaggcatttgtcattagattaggactcatctgcataagccagaatgatcgcatcttgagatccttaattacatctgcaaaggcctt-----tctccagacaaggtcaccagtcacagcttctgggtgaacacatcttttgat-ggggggtgggtacca-tttgccccactacaCATGGATATCCAAAATACTTT-CTTTACTCTTGACTGTACCAC-AGGAAACCAGGGGTTAAAACCAGTGATCAATAGCAATTGATACTCAGCCTCAG-GTGTAAG---AGAATGAGGT---------AGGCGTTGTGGCAGGGGCAGGGACTATGATACTTTCTGTCTCCATgggcagccactcctcagcatcagcagattgttcccatga----aggaatccaggtctgtgtgctcagaacttccagtttgcccaagaagtgagaaattcagatttttgtgtgaagttccctcattcttaaatattggcaattaactcaaa---Cttttttttttt---t----------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 523439 488 + 6255621 cttataagggcatttgtcattagattaggactcatctgcataagccagaatgatcgcatcttgagatccttaattacatctgcaaaggcctt-----tctccagacaaggtcaccagtcacagcttctgggtgaacacatcttttgat-ggggagtgggtacca-ttcgacccactacacatggatatccaaaatacttt-ctttactcttgactgtaccac-aggaaaccaggggttaaaaccagtgatcaatagcaattgatactcagcctcag-gtgtaag---agaatgaggt---------aggcgttgtggcaggggcagggactatgatactttctgtctccatgggcagccactcctcagcatcagcagattgttcccatga----aggaatccaggtctgtgtgctcagaacttccagtttgcccaagaagtgagaaattcagatttttgtgtgaagttccctcattcttaaatattggcaattaactcaaa---Cttttttttttt---t----------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4578639 500 - 8658521 cttataagggcatttgtcattagattaggactcatctgtataagccagaatgatcgcatcttgagatccttaattacatctgcaaaggcctt-----tctccaaacaaggtcaccagtcacagcttctgggtgaacacatcttttggtgggggggtgggtaccg-tttgacccactacacatggatatccaaaatacttt-ctttacccttgactgtaccac-aggaaaccaggggttaaaaccagtgatcaatagcaattgatactcagcctcag-gtgtaag---agaatgaggt---------aggcgttgtggcaggggcagggactatgacactttctgtctccataggcagccactcctcagcatcagcagattgttcccatga----aggaatccaggtctgtgtgctcagaacttccagtttgcccaagaagtgagaaattcagatttttgtgtgaagttccctcattcttaaatattggcaactaactcaaa---Cttttttttttt---tttttttttttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114784447 481 + 124281992 cttataaggacatttgtcattagattagggctcatctgtttaatgcagaatgatcacatcttaagatccttaattacatctgcagaggcctt-----tctccaaacaaggtca-caGGCACAGCTTCTGGGTGAACGGATCTTTTGGT--------GGGTACCA-TTCGATACACTACACATGAATATCCAAAATACTTT-CTTTTCTCTTCACTGTAGCACAAGGAAACCAGGGGTTAAAACCAGCATTAAGTAGCAACTGATACTCAGCCTCAG-ATGTAAGAGAAACATGAGGT---------AGGGGCTGGGG-GCGGGCAGGGACTATGGCACTTTCTGTCTCCATggtcagccactactcagcatcagcagattgttcccatgaaggaaggaatgcaggtctgtgtgctcagaatttccagtttgccccagaagtgagaaattcagatttttatgtgaagttccctaattcttaaatattggcaactaactcaaa---CAttttt-------------------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 427044 486 - 9212255 cttataaggacatttgtcattagattagggttcatctgtataatgcagaatgattgcatcttaagatccttaattacgtctgcaaaggcctt-----tctccaaacgaggtca-cagtcacagcttccgggtgaacaaatcttttggt--------gggtacta-ttcgatccactacaCATGAATATCCAGAATACTTT-CTTTTCTCTTAACTGTAGC--------ACCAGGGGTTAAAACCAGCGTTAAATAGCAGCTGATACTCAGCCTCAGAATGTAAGAGAAAAATGAAGTAAATACCCCAGGGGCTGggg-gcgggcagggactatggcactctctgtctccatggtcagccaccactcagcatcagcagattgttcccatgaagggaggaatgcaagtctgtgtgctcagaatttccagtttgccccagaagcgagaaaatcagatttttgtgtgaagttccctaattcttaaatattggcaactaactcaGCAttttttttt-------------------- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2842361 481 + 4466143 cttataaggacatttgtcattagattagggctcatctgtataatgcagaatgatcgcctcttaagatccttaattacgtctgcaaaggcctt-----tctccaaacaaggtca-cagtcacagcttctgtgtgaacaaatcttttggt---------ggtacca-ttcgatccactacacatgaatatccagaatacttt-cttttctcttaactgtagcacaaggaaaccaggggttaaaaccagcgttaaatagcaactgatactcagcctcag-atgtaagagaaaaatgagat---------aggggctgggg-gcgggcagggactacggcactttctgtctccatggtcagccactactcagcatcagcagattgttcccatgaaggaaggaatgcaggtctgtgtgctcagaatttccagtttgccctagaagtgagaaaatcagatttttgtgtgaagttccctaattcttaaatattggcaacgaattcaaa---CAtttttc------------------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1544190 482 + 5364348 cttataaggacatttgtcattagattagggctcatctgtataatgcagaatgatcgcatcttaagatccttaattacatctgcaaagtcctt-----tctccaaacgaggtca-cagtcacagcttctgggtgaacaaatcttttggt--------gggtacca-ttagatccactacacatgaatatccaaaatacttt-cttttctcttaactgtagcacaaggaaaccaggggttaaaaccagcgttaaatagcaactgatactcagcctcag-atgtaagagaaaaatgaggt---------aggggctgggg-gcgggcagggactatggcactttctgtctccatggtcagccactactcaacatcagcacattgttcccatgaaggaaggaatgcaggtctgtgtgctcagaattcccagtttgacccagaagtgagaaattcagatttttgtgtgaagttccctaattcttaaatattggcaactaactcaaa---Cttttttt------------------- i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33131137 431 - 38964690 tctgtaagggcacttgtcattggagaagggcccacctggacaattaaagatgctgtcatcttaaggtccttaagtacatcagcaaaaccctcccccaccccccaatatggtca-tagtcacagtttctggatgaacatatcttttggg--------ggccaCCATTTCAATCTGTTACACATGGGCATATGAAATACTTTCCTTTTCTCCTGACTTTACCATAAGAAAACTTGGTGTCAAAACAAGTGATAAATAGTTGTTGATATTCAGTCTCAG-TTTTAAGAAAAGAATGAGAT---------A--------------------GACTGTGATACTGTCCATCCCCATggacagctgctactgagcttcagcagattgttcccgtgc----aggaatgcaggtctgtgttgggagga-ttccagtttgcaagagaagcaagacatccagatttttgtgt--------ttttttttttaat------------------------------------------------ i canFam3.chr26 C 0 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 804075 4131 - 1116856 I e otoGar3.GL873618 4267446 30 + 7922563 I a score=102934.000000 s hg38.chr12_KI270834v1_alt 37649 13 + 119498 ttt----tttgagacgg s panTro5.chr12 127323998 13 + 137163284 ttt----tttgagacgg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125674827 17 + 135337776 ttttgtatttgagacgg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8188214 13 - 8369578 ttc----tttgagacgg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97836004 13 + 106955855 ttt----tttgagacag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123960587 13 + 133663169 ttt----tttgagacgg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128208213 13 + 137757926 ttt----tttgagacgg i macFas5.chr11 I 106 C 0 s macNem1.NW_012010578v1 10608116 13 - 16319837 ttt----tttgagatgg i macNem1.NW_012010578v1 I 3 C 0 s cerAty1.NW_012001186v1 12230883 13 + 20526591 aat----tttgagacgg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119203807 13 + 128539186 aat----tttgagacgg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 523927 13 + 6255621 aat----tttgagacgg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4579139 6 - 8658521 -----------agacgg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114784928 13 + 124281992 ttt----tttgagacgg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 427530 13 - 9212255 ttt----tttgagacgg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2842842 13 + 4466143 ttt----tttgagacgg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1544672 13 + 5364348 ttt----tttgagacag i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33131568 13 - 38964690 tta----tttatgatag i canFam3.chr26 C 0 I 53 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 804075 4131 - 1116856 I e otoGar3.GL873618 4267446 30 + 7922563 I a score=385446.000000 s hg38.chr12_KI270834v1_alt 37662 42 + 119498 ggtcttgc----actgttgcctgggtgggagtgcaatagtgctatc s panTro5.chr12 127324011 42 + 137163284 agtcttgc----actgttgcctgggtgggagtgcaatagtgctatg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125674844 42 + 135337776 agtcttgc----actgttgcctgggtgggagtgcaatagtgctatg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8188227 42 - 8369578 ggtcttgc----actgttgcctgggtgggagtgcaatagtgctatc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97836017 42 + 106955855 agtcttgc----actgttgcctgggtgggagtgcaatagtactatc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123960600 42 + 133663169 agtcttgc----actgttgcctgggcaggagtgcagtagtgctatc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128208226 42 + 137757926 agtcttgc----actgttgcctgggcaggagtgcagtagtgctatc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10608129 42 - 16319837 agtcttgc----actgttgcctgggcaggagtgcagtagtgctatc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12230896 42 + 20526591 agtcttgc----actgttgcctgggcgggagtgcagtagtgccatc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119203820 42 + 128539186 agtcttgc----actgttgcctgggcgggagtgcagtagtgctatc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 523940 42 + 6255621 agtcttgc----actgttgcctgggcgggagtgcagtagtgctatc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4579145 46 - 8658521 agtcttgcactgactgttgcctgggcgggagtacagtagtgctatc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114784941 42 + 124281992 agtcttgc----actgtcacccaggtgggagttcaatggtgcgatc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 427543 42 - 9212255 agtcttgc----actgttacccaggtaggagttcaatggtgcgatc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2842855 42 + 4466143 agtcttga----actgtttcccaggtgggagttcaatggtgcgatc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1544685 42 + 5364348 agtcttgc----actatcgcccaggtgggagttcaatggtgcgatc i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 804075 4131 - 1116856 I e canFam3.chr26 33131581 53 - 38964690 I e otoGar3.GL873618 4267446 30 + 7922563 I a score=2061006.000000 s hg38.chr12_KI270834v1_alt 37704 211 + 119498 ttggctcactgcaacctgtgcctcctgggttcatgcgattc--tcctgcctcagcctcctgagtag---ctgggattacaggca-----cacaccactatgcc---------------------------------------------tggctaa----------------------ttttttgtatttttagtagagacggggtttcactatg---------------------------------ttggccag-----actggtctcgaact----cctgacctcgcgatccg------cccaccttggcct---cccaaagtg-----------------------ctgggatt----------acag---T s panTro5.chr12 127324053 221 + 137163284 ttggctcactgcaacctgtgcctcctgggttcatgcgattc--tcctgcctcagcctcctgagtag---ctgggattacaggca-----cacaccactatgcc---------------------------------------------tggctaa----------------------ttttttgtatttttagtagagacggggtttcactatg---------------------------------ttggccag-----actggtctcgaact----cctgacctcgcgatccg------cccacctcggcct---cccaaagtg-----------------------ctgggattacaggcTCAAACAG---T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125674886 221 + 135337776 ttggctcactgcaacctgtgcctcctgggttcatgcgattc--tcctgcctcagcctcctgagtag---ctgggattacaggca-----cacaccactatgcc---------------------------------------------tggctaa----------------------ttttttgtatttttagtagagacggggtttcactatg---------------------------------ttggccag-----actggtctcgaact----cctgacctcgcgatccg------cccacctcggcct---cccaaagtg-----------------------ctgggattacaggcTCAAACAG---T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8188269 220 - 8369578 ttggctcactgcaacctgtgcctcctgggttcatgcgattc--tcctgcctcagcctcctgagtag---ctgggattacaggca-----cacaccactatgcc---------------------------------------------tggctaa----------------------ttttttgtatttttagtagagacagggtttcactatg---------------------------------ttggccag-----actggtctcgaact----cctgacctcgcgatccg------cccacctcggcct---cccaaagtg-----------------------ctgggattacaggcTCAAACAG---- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97836059 214 + 106955855 tcggctca-------ctatgcctcttgggttcatgcgattc--tcctgcctcagcctcctgagtag---ctgggattacaggca-----cacaccactatgcc---------------------------------------------tggctaa----------------------ttttttgtatttttagtaaagatggggtttcactatg---------------------------------ttggccag-----actggtctctaact----cctgacctcgtgatctg------cccagctcaacct---cccaaagtg-----------------------ctgggattacgggcTCAAACAA---T i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123960642 221 + 133663169 tcagctcacttcaacctctgcctcctgggttcatgcaattc--tcctgcctcagcctcctgagtag---ctgggattacaggca-----cacaccactacgcc---------------------------------------------tggctaa----------------------ttttttctatttttagtagagattgggtttcactatg---------------------------------ttggccag-----actggtctcgaact----cctgaccttgtgatccg------cctaccttggcct---cccaaagtg-----------------------ctgggattacaggcTCAAACAA---T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128208268 221 + 137757926 tcagctcacttcaacctctgcctcctgggttcatgcaattc--tcctgcctcagcctcctgagtag---ctgggattacaggca-----cacaccactacgcc---------------------------------------------tggctaa----------------------ttttttctatttttagtagagattgggtttcactatg---------------------------------ttggccag-----actggtctcgaact----cctgacctcgtgatccg------cctacctcggcct---cccaaagtg-----------------------ctgggattacaggcTCAAACAA---T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10608171 219 - 16319837 tcagctcacttcaacctctgcctcctgggttcatgcaattc--tcctgcctcagcctcctgagtag---ctgggattacaggca-----cacaccactacgcc---------------------------------------------tggctaa------------------------ttttctatttttagtagagattgggcttcactatg---------------------------------ttggccag-----actggtctcgaact----cctgacctcgtgatccg------cctacctcggcct---cccaaagtg-----------------------ctgggattacaggcTCAAACAA---T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12230938 221 + 20526591 tcagctcacttcaacctctgcctcctgggttcatgtgattc--tcctgcctcagcctcctgagtag---ctgagattacaggca-----cacactactatgcc---------------------------------------------tggctaa----------------------ttttttgtatttttagtagagattgggtttcactatg---------------------------------ttggccag-----actggtctcgaact----cctgacctcgtgatcca------cctaccttggcct---cccaaagtg-----------------------ctgggattacaggcTCAAACAA---T i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119203862 221 + 128539186 tcagctcacttcaacctctgcctcctgggttcatgtgattc--tcctgcctcagcctcctgagtag---ctgagattacaggca-----cacaccactatgcc---------------------------------------------tggctaa----------------------ttttttgtatttttagtagagattgggtttcactatg---------------------------------ttggccag-----actggtcttgaact----cctaacctcgtgatcca------cctaccttggcct---cccaaagtg-----------------------ctgggattacaggcTCAAACAA---T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 523982 221 + 6255621 tcagctcacttcaacctctgcctcctgggttcatgtgattc--tcctgcctcagcctcctgggtag---ctgagattacaggca-----cacaccactatgcc---------------------------------------------tggctaa----------------------ttttttgtatttttagtagagattgggtttcactatg---------------------------------ttggccag-----actggtctcgaact----cctgacctcgtgatcca------cctaccttggcct---cccaaagtg-----------------------ctgggattacaggcTCAAACAA---T i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4579191 220 - 8658521 tcagctcacttc-acctctgcctcctgggttcatgctattc--tcctgcctcagcctcctgagtag---ctgggattacaggca-----cacaccactacgcc---------------------------------------------tggctaa----------------------ttttttgtatttttagtagagattgggtttcactatg---------------------------------ttggccag-----actggtctcgaact----cctgacctcgtgatccg------cctacctcggcct---cccaaagtg-----------------------ctgggattacaggTTCAAACAA---T i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114784983 218 + 124281992 tcggcttactgcagcctctgcctcccatgttcacatgattc--tcctgcctcagcctcccgagtag---gtgggattacaggca-----ctcactaccacgcc---------------------------------------------cagctaa---------------------tttttttttatttttagtagagacgggatttcactatg---------------------------------ttggccag-----actggtcttgaact----cttgacctcgtgatcca------cctgccttggcct---cccaaagtg-----------------------ctgggattacaagcTCAG-------T i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 427585 224 - 9212255 tcagcttactgcagcctctgcctcccatgttcacatgattc--tcctgcctcagtgtcctgagtag---ctgggattacaggca-----cacactaccatgcc---------------------------------------------cagctaa----------------------ttttttgtatttttagtagagacaggatttcactatg---------------------------------ttggccag-----actggtcttgaact----cttgacctcatgatcca------cccgccttggcct---cccaaagtg-----------------------ctgggattataggcTCAAACAGCTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2842897 221 + 4466143 tcggcttactgcaacctccgcctcccatgttcacatgattc--tcctgcctcagccccctgagtag---atgggattacaggca-----cacactaccatgcc---------------------------------------------cagctaa----------------------ttgtttgtatttttagtagagacgggatttcactatg---------------------------------ttggccag-----actggtcttgaact----cttgacctcgtgatcca------cctgccttggcct---cccaaagtg-----------------------ctgggattacaggcTCAAACAG---T i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1544727 221 + 5364348 tcggcttactgcaacctccacctcccatgttcacatgattc--tcctgcctcagccttccgagtag---ctgggagtacaggca-----cacactaccatgcc---------------------------------------------cagctaa----------------------ttttttgtatttttagtagagatggtatttcactatg---------------------------------ttggccag-----actggtcttgaact----cttgacctcgtgatcca------ccctccttggcct---cccaaagtg-----------------------ctgggattacaggcTCAAACGG---T i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33131634 357 - 38964690 caggctccatgcaccgggagccc------gacgtgggattcgatcccg----ggtctccaggatcgcgccctgggccaaaggcaggcgccaaaccgctgcgccacccagggatcccttttgtgttgtttttaaattcttcaatgatggtgactgactcaaaCAAttttttaaaagatttatttatttatttgagggagagagagtgtgagtagggggaggagcagaggaagagaatccccaagcagattccccaatgagcactgagcctgaagtgtggcctgatcccatgacccatgagatcatgactgggcagaaacccagagttggacatttaactgaccaaaccacctgggtgcccAGACTCA--------G i canFam3.chr26 I 53 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e dasNov3.JH568189 804075 4131 - 1116856 I e otoGar3.GL873618 4267446 30 + 7922563 I a score=74494.000000 s hg38.chr12_KI270834v1_alt 37915 6 + 119498 TTTTTA s panTro5.chr12 127324274 6 + 137163284 TTTTTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125675107 6 + 135337776 TTTTTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8188489 6 - 8369578 TTTTTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97836273 6 + 106955855 TTTTTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123960863 6 + 133663169 TTTTTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128208489 6 + 137757926 TTTTTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10608390 6 - 16319837 TTTTTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12231159 6 + 20526591 TTTTTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119204083 6 + 128539186 TTTTTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 524203 6 + 6255621 TTTTTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4579411 6 - 8658521 TTTTTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114785201 6 + 124281992 TTTTTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 427809 6 - 9212255 TTTTTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2843118 6 + 4466143 TTTTTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1544948 6 + 5364348 TTTTTA i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33131991 6 - 38964690 TTTTTA i canFam3.chr26 C 0 I 11 s dasNov3.JH568189 808206 6 - 1116856 TTGTCA i dasNov3.JH568189 I 4131 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I e otoGar3.GL873618 4267446 30 + 7922563 I a score=1391947.000000 s hg38.chr12_KI270834v1_alt 37921 117 + 119498 TGTACCATTTC---------AGTCAAACCTCTGGGCCAACTAGGGTGCTCTGTCTCAGATACTGGGTAGAAAACCCTGGGAAAAAGACATTCAACATGAATGGGCAGGTTATACCAAGTTCCATAA s panTro5.chr12 127324280 117 + 137163284 TGTACCATTTC---------AGTCAAACCTCTGGGCCAACTAGGGTGCTCTGTCTCAGATCCTGGCTAGAAAACCCTGGGAAAAAGACATTCAACATGAATGGGCAGGTTATACCAAGTTCCATAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125675113 117 + 135337776 TGTACCATTTC---------AGTCAAACCTCTGGGCCAACTAGGGTGCTCTGTCTCAGATCCTGGCTAGAAAACCCTGGGAAAAAGACATTCAACATGAATGGGCAGGTTATACCAAGTTCCATAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8188495 117 - 8369578 TGTACCATTTC---------AGTCAAACCTCTGGGCCAACTAGGGTGCTCTGTCTCAGATCCTGGCTAGAAAACCCTGGGAAAAAGACATTCAACATGAATGGGCAGGTTATACCAAGTTCCATAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97836279 116 + 106955855 TGTACCA-TTC---------AGTCAAACCTCTGGGCCAACTAGGGTGCTGTGTCTCAGATTCTGGCTAGAAAACCCTGGGAAAAAGACGTTCAACATGAATGGGCAGGTTATACCAAGTTCCATAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123960869 116 + 133663169 TGTACCA-TTC---------AGTTAAACCTGTGGGCCAGCTAGGGTGCTCTGTCTCAGATCCTGGTTAGAAAACCCTGGGAAAAAGACATTCAACATGAATGGGCAGGTTATACCAAGTTCCATAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128208495 116 + 137757926 TGTACCA-TTC---------AGTTAAACCTGTGGGCCAGCTAGGGTGCTCTGTCTCAGATCCTGGTTAGAAAACCCTGGGAAAAAGACATTCAACATGAATGGGCAGGTTATACCAAGTTCCATAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10608396 116 - 16319837 TGTACCA-TTC---------AGTTAAACCTGTGGGCCAGCTAGGGTGCTCTGTCTCAGATCCTGGTTAGAAAACCCTGGGAAAAAGACATTCAACATGAATGGGCAGGTTATACCAAGTTCCATAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12231165 116 + 20526591 TGTACCA-TTC---------AGTTAAACCTGTGGGCCAGCTAGGGTGCTCTGTCTCAGATTCTGGTTAGAAAACCCTGGGAAAAAGACATTCAACATGAATGGGCAGGTTATACCAAGTTCCATAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119204089 116 + 128539186 TGTGCCA-TTC---------AGTTAAACCTGTGGGCCAGCTAGGGTGCTCTGTCTCAGATTCTGGTTAGAAAACCCTGGGAAAAAGACATTCAACATGAATGGGCAGGTTATACCAAGTTCCATAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 524209 116 + 6255621 TGTACCA-TTC---------AGTTAAACCTGTGGGCCAGCTAGGGTGCTCTGTCTCAGATTCTGGTTAGAAAACCCTGGGAAAAAGACATTCAACATGAATGGGCAGGTTATACCAAGTTCCATAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4579417 116 - 8658521 TGTACCA-TTC---------AGTTAAACCTGTGGGCCAGCTAGGGTGCTCTGTCTCAGATCCTGGCTAGAAAACCCTGGGAAAAAGACATTCAACATGAATGGAAAGGTTATACCAAGTTCCATAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114785207 115 + 124281992 TATGCCA-TTC---------AGTCAAACCTCTGGGCCAACTAGGGTACTCTTTCTCAGATCCTGGCTAGGAAACCCTGGGAAAAAGACATTCAACATGAATGGGCAGGTTATACCGCGTT-CATAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 427815 116 - 9212255 TATACCA-TTC---------AGTCAAACCTCTGGGCCAACTAGGGTACTCTTTATCAGATCCTGGCTAGGAAACCCTGGGAAAAAGACATTCAACATGAATGGGCAGGTTATACCAAGTTCCGTAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2843124 116 + 4466143 TATACCA-TTC---------AGTCAAACCTCTGGGCCAACTAGGGTACTCTTTCTCAGATCCTGGCTAGGAAACCCTGGGAAAAAGACATTCAACATGAATGGGCAGGTTATACCAAGTTCCATAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1544954 116 + 5364348 TATACCA-TTC---------AGTCAAACCTCTGGGCCAACTAGGGTACTCTTTCTCAGATCCTGGCTGGGAAACCCTGGGAAAAAGACATTCAACATGAATGGGCAGGTTATACCAAGTTCCATAA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4267476 110 + 7922563 TGTTCCCTGTG---------GGCCAAACCTCTGGACCATGTAAGATGCTCTGTCTCAGATCCTGGCTAGAAAACCCTGGG-AGAAGCTATGCAAACTGCACGGGCAGGTTA------GTTCCATGA i otoGar3.GL873618 I 30 C 0 s canFam3.chr26 33132008 104 - 38964690 TTTCCCA-TTTGATTTTATGGGTCAAACTTCTGGAACAAGTTGGGTGCTCAGTCTCAGGTCCTTGCTATGAAACTCTGAGAACAAGACAT-CAACATGA-------------------TTCCCTA- i canFam3.chr26 I 11 C 0 s dasNov3.JH568189 808212 114 - 1116856 TGCGCCC-TCT---------GGTCTTGCCTGTGGAGCAGGTAGGGTGCTCTGGCTCGGGTCCTGGCTGGAGAGCCCTGGG-AATAGATGTTCAATGTGAATGGGCACACTGC-CCAAGTCCCATGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e mm10.chr5 124787517 2185 + 151834684 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I a score=350915.000000 s hg38.chr12_KI270834v1_alt 38038 31 + 119498 TTGGAAGCTCTC-TAGGACCCATGGCTCTCCT s panTro5.chr12 127324397 31 + 137163284 TTGGAAGCTCTC-TAGGATGCATGGCTCTCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125675230 31 + 135337776 TTGGAAGCTCTC-TAGGATGCATGGCTCTCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8188612 31 - 8369578 TTGGAAGCTCTC-TAGGACCCATGGCTCTCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97836395 31 + 106955855 TTGGAAGCTGTC-TAGGACCCATGGCTCTCCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123960985 31 + 133663169 TTGGAAACTCTC-TAGGACCCATACCTCTCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128208611 31 + 137757926 TTGGAAACTCTC-TAGGACCCATACCTCTCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10608512 31 - 16319837 TTGGAAACTCTC-TAGGACCCATACCTCTCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12231281 31 + 20526591 TTGGAAACTCTC-TAGGACCCATACCTCTCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119204205 31 + 128539186 TTGGAAACTCTC-TAGGACCCATACCTCTCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 524325 31 + 6255621 TTGGAAACTCTC-TAGGACCCATACCTCTCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4579533 31 - 8658521 TTGGAAACTCTC-TAGGACCCATACCTCTCCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114785322 31 + 124281992 TTGGAAGCTCTC-TAGGACCCATGGCTCTCCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 427931 31 - 9212255 TTGGAAGCTCTC-TAGGACCCATGGCTCTCCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2843240 31 + 4466143 TTGGAAGCTCTC-TAGGACCCATGGGTCTCCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1545070 31 + 5364348 CTGGAAGCTCTC-TAGGACCCATGGCTCTCCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4267586 32 + 7922563 TTGGAAACTATCTTAAGACCTTTGGCTCACCT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124789702 31 + 151834684 TTGGAAACACTT-TAGGGTCTGTGGCTTACTG i mm10.chr5 I 2185 I 11 s canFam3.chr26 33132112 14 - 38964690 -TGAAAGCT----TGGGTT------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 808326 29 - 1116856 ATGGCAGCTCTC-CAGGGTTCATGGCTCCT-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9440486 5899 - 31815103 I e proCoq1.NW_012154285v1 6693697 2295 - 9870158 I a score=3213555.000000 s hg38.chr12_KI270834v1_alt 38069 164 + 119498 TTCTTTGGTTGCTGCAGGTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAGGTTGTTGACATTGGCCAACGGGGAACGCATCCGGCTCCAAGCACACTGTGCCCTGCTCTTTGAGGCAAGTAGTGA s panTro5.chr12 127324428 164 + 137163284 TTCTTTGGTTGCTGCAGGTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAGGTTGTTGACATTGGCCAACGGGGAACGCATCCGGCTCCAAGCACACTGTGCCCTGCTCTTTGAGGCAAGTAGTGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125675261 164 + 135337776 TTCTTTGGTTGCTGCAGGTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAGGTTGTTGACATTGGCCAACGGGGAACGCATCCGGCTCCAAGCACACTGTGCCCTGCTCTTTGAGGCAAGTAGTGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8188643 164 - 8369578 TTCTTTGGTTGCTGCAGGTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAGGTTGTTGACATTGGCCAACGGGGAACGCATCCGGCTCCAAGCACACTGTGCCCTGCTCTTTGAGGCAAGTAGTGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97836426 164 + 106955855 TTCTTTGGTTGCTGCAGGTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAGGTTGTTGACATTGGCCAACGGGGAACGCATCCGGCTCCAAGCACACTGTGCCCTGCTCTTTGAGGCAAGTAGTGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123961016 164 + 133663169 TTCTTTGGTTACTGCAGGTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAAGTTGTTGACATTGGCCAATGGGGAACGCATCCGGCTCCAAGCACACTGTGCCCTGCTCTTTGAGGCAAGTAGTGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128208642 164 + 137757926 TTCTTTGGTTGCTGCAGGTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAAGTTGTTGACATTGGCCAATGGGGAACGCATCCGGCTCCAAGCACACTGTGCCCTGCTCTTTGAGGCAAGTAGTGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10608543 164 - 16319837 TTCTTTGGTTGCTGCAGGTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAAGTTGTTGACATTGGCCAATGGGGAACGCATCCGGCTCCAAGCACACTGTGCCCTGCTCTTTGAGGCAAGTAGTGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12231312 164 + 20526591 TTCTTTGGTTGCTGCAGGTATATTTTATTTGATGGTGATGTGGATGCTCTGTGGGTGGAAAACATGAATTCTGTGATGGATGACAACAAGTTGTTGACATTGGCCAATGGGGAACGCATCCGGCTCCAAGCACACTGTGCCCTGCTCTTTGAGGCAAGTAGTGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119204236 164 + 128539186 TTCTTTGGTTGCTGCAGGTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAAGTTGTTGACATTGGCCAATGGGGAACGCATCCGGCTCCAAGCACACTGTGCCCTGCTCTTTGAGGCAAGTAGTGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 524356 164 + 6255621 TTCTTTGGTTGCTGCAGGTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAAGTTGTTGACATTGGCCAATGGGGAACGCATCCGGCTCCAAGCACACTGTGCCCTGCTCTTTGAGGCAAGTAGTGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4579564 164 - 8658521 TTCTTTGGTTGCTGCAGGTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAGGTTGTTGACATTGGCCAATGGGGAACGCATCCGACTCCAAGCGCACTGTGCCCTGCTCTTTGAGGCAAGTAGTGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114785353 164 + 124281992 TTCTTTGGTTGCTCCAGGTATATTTTATTTGATGGTGATGTGGATGCTTTATGGGTGGAGAACATGAATTCTGTGATGGATGACAACAGGCTGTTGACCTTGGCCAACGGGGAACGCATCCGGCTCCAAGCACACTGCGCCCTGCTCTTTGAGGCAAGTGGTAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 427962 164 - 9212255 TTCTTTGCTTGCTCCAGGTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAGGCTGTTGACATTGGCCAACGGGGAACGCATCCGGCTCCAAGCACACTGCGCCCTGCTCTTTGAGGCAAGTGCTAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2843271 164 + 4466143 TTCTTTGGCTGCTCCAGGTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAGGCTGTTGACATTGGCCAACGGGGAACGCATCCGGCTCCAAGCACACTGCGCCCTGCTCTTTGAGGCAAGTGGTAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1545101 164 + 5364348 TTCTTTGGTTGCTCCAGGTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAGGCTGTTGACATTGGCCAACGGGGAACGCATCCGGCTCCAAGCACACTGCGCCCTGCTCTTTGAGGCAAGTGGTAA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9446385 164 - 31815103 TTCTGTGGCTGCCGCAGGTACATTTTGTTTGATGGTGACGTGGACGCCCTGTGGGTGGAAAACATGAATTCTGTGATGGACGACAACAGGCTGTTGACCTTGGCCAACGGGGAGCGCATTCGGCTTCAAGCGCACTGCGCCCTACTCTTTGAGGCAAGTGGGGA i micMur3.chr21 I 5899 C 0 s proCoq1.NW_012154285v1 6695992 164 - 9870158 TTCTTTGGTCGCCGCAGGTATATTCTATTTGACGGGGACGTGGATGCCCTGTGGGTGGAAAACATGAACTCCGTGATGGACGACAACAGGCTGCTGACCTTGGCCAACGGGGAGCGCATCCGGCTGCAGGCGCACTGCGCCCTGCTCTTCGAGGCGAGTCGTGA i proCoq1.NW_012154285v1 I 2295 I 1173 s otoGar3.GL873618 4267618 164 + 7922563 TCCTGTGGTTTCTGTAGGTACATATTATTTGATGGTGATGTGGATGCTCTGTGGGTAGAAAACATGAATTCTGTGATGGATGACAACAGGCTATTGACATTGGCCAATGGGGAACGTATCCGGCTTCAAGCACACTGCGCTCTGCTCTTTGAGGCAAGTAGTGA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124789744 164 + 151834684 CTCCTTGGTCCCTGCAGGTATATTTTGTTCGATGGTGACGTGGATGCCTTGTGGGTGGAAAACATGAACTCCGTGATGGACGACAACAAACTGTTGACCTTGGCCAACGGGGAGCGCATCCGGCTCCAGGCGCACTGCGCCCTGCTCTTTGAGGCAAGTAGCGC i mm10.chr5 I 11 C 0 s canFam3.chr26 33132126 164 - 38964690 ATTTTTACTTGCTATAGGTATATTTTATTTGATGGGGATGTGGATGCTCTGTGGGTAGAAAACATGAATTCTGTGATGGATGACAACAAGCTGTTGACATTGGCCAATGGGGAGCGCATTCGGCTTCAAGCACACTGTGCTCTGCTCTTTGAGGCAAGTAGTAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 808355 164 - 1116856 TTCTTTGGTTGCCACAGATATATCTTATTTGATGGCGATGTGGATGCCCTGTGGGTGGAAAACATGAATTCTGTGATGGATGACAACAAACTGTTGACGTTGGCCAATGGAGAGCGCATTCGACTTCAAGCACACTGTGCTCTGCTGTTTGAGGCAAGTAGCAA i dasNov3.JH568189 C 0 C 0 a score=1083489.000000 s hg38.chr12_KI270834v1_alt 38233 85 + 119498 TTAAAAGTAAATTTGAACATAAATCTTTCTTGTAATTAAAAATGCAAatgtttgttaaagtagtagtaaatgtagatgattattt s panTro5.chr12 127324592 85 + 137163284 TTAAAAGTAAATTTGAACATAAGTCTTTCTTGTAATTAAAAATGCAAatgtttgttaaagtagtagtaaatgtagatgattattt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125675425 85 + 135337776 TTAAAAGTAAATTTGAACATAAGTCTTTCTTGTAATTAAAAATGCAAatgtttgttaaagtagtagtaaatgtagatgattattt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8188807 84 - 8369578 TTAAAAGT-AATTTGAACATAAGTCTTTCTTGTAATTAAAAATGCAAATGTTTGTTAAAGTagtagtaaatgtagatgattattt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97836590 85 + 106955855 TTAAAAGTAAATTTGAACATAGGTCTTTCTTGTAATTAAAAATGTAAatgtttgttaaagtagtagtaaatataggtgattattt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123961180 85 + 133663169 TTAAAAGTAAATTTGAACATAAGTCTTTCTTGTAATTAAAAATGTAAatgtttattaaagtagtagtaaatatagacgattattt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128208806 85 + 137757926 TTAAAAGTAAATTGGAACATAAGTCTTTCTTGTAATTAAAAATGTAGatgtttattaaagtagtagtaaatatagacgattattt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10608707 85 - 16319837 TTAAAAGTAAATTTGAACATAAGTCTTTCTTGTAATTAAAAATGTAGatgtttattaaagtagtagtaaatatagacgattattt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12231476 85 + 20526591 TTAAAAGTAAATTTGAACATAAGTCTTTCTTGTAATTAAAAATGTAAatgtttattaaagtagtagtaaatatagactattattt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119204400 85 + 128539186 TTAAAAGTAAATTTGAACATAAGTCTTTCTTGTAATTAAAAATGTAAatgtttattaaagtagtagtaaatatagacgattattt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 524520 85 + 6255621 TTAAAAGTAAATTTGAACATAAGTCTTTCTTGTAATTAAAAATGTAAatgtttattaaagtagtagtaaatatagatgattattt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4579728 85 - 8658521 TtaaaagtaaatttgaacataagtctttcttgtaattaaaaatgtaaatgtttattaaagtagtagtaaatatagatgATTAttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114785517 85 + 124281992 TTAAAAGTAAATTTGAACGTAAGTCTTTCTTGTAATTAAACATGTGAATGTTTATTAAAGTAGTAGTAAATATAGATGATTATTT i calJac3.chr9 C 0 I 1 s saiBol1.JH378194 428126 82 - 9212255 TTAAAAGTAAATTTAAACATAAGTCTTTGTTGTAATTAAACATGTAAatgtttattaaagtagtagtaaatatagatg---attt i saiBol1.JH378194 C 0 I 1 s cebCap1.NW_016107484v1 2843435 82 + 4466143 TTAAAAGTAAATTTGAACCTAAGTCTTTCTTGCAATTAAACATGTAAatgtttattaaagtagtagtaaatatagatg---attt i cebCap1.NW_016107484v1 C 0 I 1 s aotNan1.NW_018491581v1 1545265 85 + 5364348 TTAAAAGTAAACTTGAACATAAGTGTTTCTTGTAATTAAACATGTAAatgtttattaaagtagtagcaaatatagatgattattt i aotNan1.NW_018491581v1 C 0 I 3836 s micMur3.chr21 9446549 83 - 31815103 CGGAAAGTGATTTCGAACATGCGTCTTGCTTTTAAGTAAAAATCCGAatgtttatcgaagtagtaataaacatagacgaccgt-- i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4267782 79 + 7922563 TGAAAAATAATTTTTAATAGACATCTTTCTTT----TGAAAATTTGAatgtttattaaagtagtgataagtatagatgattat-- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124789908 75 + 151834684 CTAGATCCGAACTTGAACACAGGCTTCGCTTTTGGTTAA----TTAATTCTCTATTGAAGTAG--GTGGCTATGGAAATTC---- i mm10.chr5 C 0 C 0 s canFam3.chr26 33132290 82 - 38964690 TGAAAAATAGTTTTAA---TATGTCTTTCTTTTCAGTAAAAGTTTAAattttcattaaattgataataaatatagatgactaaag i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 808519 80 - 1116856 TGAAAAATAATTTTAAGCACAAATCTTT----TAATTTAAATTTTAAATGTTTACtatagtagtaataaatataggtgactaca- i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I a score=670138.000000 s hg38.chr12_KI270834v1_alt 38318 51 + 119498 aaaaacaaacaatgcataaggg--tttataatgaa---------------tacaactctttgttctt----t s panTro5.chr12 127324677 51 + 137163284 aaaaacaaacaatgcataaggg--tttataatgaa---------------tacaactctttgttctt----t i panTro5.chr12 C 0 C 0 s panPan2.chr12 125675510 51 + 135337776 aaaaacaaacaatgcataaggg--tttataatgaa---------------tacaactctttgttctt----t i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8188891 51 - 8369578 aaaaacaaacaatgcataaggg--tttataatgaa---------------tacaactctttgttctt----t i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97836675 51 + 106955855 aaaaacaaacaatgcataaggg--tttataatgag---------------tacaaccctttgttctt----t i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123961265 51 + 133663169 aaaaacaaacaatacataaggg--tttataatgag---------------tacaactctttgttctt----t i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128208891 51 + 137757926 aaaaacaaacaatacataaggg--tttataatgag---------------tacaactctttgttcct----t i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10608792 51 - 16319837 aaaaacaaacaatacgtaaggg--tttataatgag---------------tacaactctttgttcct----t i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12231561 51 + 20526591 aaaaacaaacaatacataaggg--tttataatgag---------------tacaactctttgttctt----t i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119204485 51 + 128539186 aaaaacaaacaatacataaggg--tttataatgag---------------tacaactctttgttctt----t i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 524605 51 + 6255621 aaaaacaaacaatacataaggg--tttataatgag---------------tacaactctttgttctt----t i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4579813 51 - 8658521 aaaaacaaacaatacataaggg--tttataatgag---------------tataactctttgttctt----t i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114785603 51 + 124281992 AAAAACAAACAATGCATAAGGC--TTTATAATAAG---------------TACAACTCTTTGTTCTT----C i calJac3.chr9 I 1 C 0 s saiBol1.JH378194 428209 51 - 9212255 aaaaacgaacaatgcgtaaggg--tttctaataag---------------tacaactctttgttctt----t i saiBol1.JH378194 I 1 C 0 s cebCap1.NW_016107484v1 2843518 51 + 4466143 aaaaacaaacaatgcttaaggg--tttataataag---------------tacaaccctgtgttctt----t i cebCap1.NW_016107484v1 I 1 C 0 s aotNan1.NW_018491581v1 1549186 51 + 5364348 aaaaacaaacaatgcataaggg--tttataataag---------------gacaactctttgttctt----t i aotNan1.NW_018491581v1 I 3836 C 0 s micMur3.chr21 9446632 53 - 31815103 --aaaaaaacaatgcacgagag--tttatgatgag---------------tacaactctttgttctttatct i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4267861 50 + 7922563 ---aaaaaacaaagaacaaaag--tttatgatgag---------------tacaa--ctttgttctttatct i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124789983 49 + 151834684 -----------------AGAGG--TTTATAATGAGTTACATTTTCTTCAATACATTTATCTATGCTT----T i mm10.chr5 C 0 I 247 s canFam3.chr26 33132373 53 - 38964690 aaacccaaacagtgcagaagagtttttatgatgac---------------cacaactcagtattccc----c i canFam3.chr26 I 1 I 2 s dasNov3.JH568189 808599 47 - 1116856 acaaataaaccatgcagaag----tttatgatg-----------------tacaactctgtgctctt----c i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I a score=636601.000000 s hg38.chr12_KI270834v1_alt 38369 52 + 119498 ----actcctctca-tccctcttt-----atcccagaagtgactacttttac--tttttatg--aa s panTro5.chr12 127324728 52 + 137163284 ----actcctctca-tccctcttt-----atcccagaagtgactacttttac--tttttatg--aa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125675561 52 + 135337776 ----actcctctca-tccctcttt-----atcccagaagtgactacttttac--tttttatg--aa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8188942 52 - 8369578 ----actcctctca-tccctcttt-----atcccagaagtgactacttttac--tttttatg--aa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97836726 52 + 106955855 ----actcctctca-tccctcttt-----atcccagaggtgactacttttac--tttttatg--aa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123961316 52 + 133663169 ----actcctctca-tccctcttt-----atcccagaggtgactacttttac--tttttatg--aa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128208942 54 + 137757926 ----acttctctca-tccctcttt-----atcccagaggtgactacttttac--tttttatgaaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10608843 54 - 16319837 ----acttctctca-tccctcttt-----atcccagaggtgactacttttac--tttttatgaaaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12231612 52 + 20526591 ----actcctctca-tccctcttt-----atcccagaggtgactacttttac--tttttatg--aa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119204536 52 + 128539186 ----actcctctca-tccctcttt-----atcccagaggtaactacttttac--tttttatg--aa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 524656 52 + 6255621 ----actcctgtca-tccctctcc-----gtcccagaggtgactacttttac--tttttatg--aa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4579864 52 - 8658521 ----actcctctca-tccctcttt-----atcccagaggtgactacttttac--tttttatg--aa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114785654 52 + 124281992 ----ACTCCTCTCA-TCCCTCTTT-----ATCCCAGAAGTGTCTACTtttac--tttttatg--aa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 428260 52 - 9212255 ----actcctttta-tccctcttt-----atcccagaagtgtctacttttac--ttttcatg--aa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2843569 52 + 4466143 ----actcctctca-tcgctcttt-----atcccagaagtgtctacttttac--tttttatg--aa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1549237 52 + 5364348 ----actcctctca-tccctcttt-----atcccagaagtgtctacttttac--tttttatg--aa i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9446685 58 - 31815103 ----actcccctcattccctctttactccatcccagatgtgattaatt-tac-ttatttttg--ag i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4267911 55 + 7922563 ----actccccgcattccctcttt-----atcccagagatgattatttctactttttttttg--aa i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33132428 55 - 38964690 ----actcctctta-tccctctttactgaattccagaggtaactatttttca--ctcttgag---- i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 808646 57 - 1116856 acatgctcccccag-cccttctctcctgtgccacaaaggcagctactttt----cactcaag---- i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124790032 247 + 151834684 I e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I a score=896939.000000 s hg38.chr12_KI270834v1_alt 38421 82 + 119498 ttgtttcttctgatgattaccctagtgtctataagtaacaggcttagcatgatat-tcttcctttatacattttatagtttat s panTro5.chr12 127324780 82 + 137163284 ttgtttcgtctgatgattaccctagtgtctataagtaacagggttagcatgatat-tcttcctttatacattttatagtttat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125675613 82 + 135337776 ttgtttcgtctgatgattaccctagtgtctataagtaacagggttagcatgatat-tcttcctttatacattttatagtttat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8188994 82 - 8369578 ttgtttcttctgatgattaccctagtgtctataagtaacaggcttagcatgatat-tcttcctttatacattttatagtttat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97836778 82 + 106955855 ttgtttcttctgatgattacccttgtgtctataagtaacacgcttagcatgatat-tcttcctttatacattttatactttat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123961368 82 + 133663169 ttgtttcttctcatgattaccctactgtctataagtaacaggcttagcatgatat-tcttcctttatacattttatagtttat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128208996 82 + 137757926 ttgtttcttctcatgattaccctactgtctataagtaacaggcttagcatgatat-tcttcctttatacattttatagtttat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10608897 82 - 16319837 ttgtttcttctcatgattaccctactgtctataagtaacaggcttagcatgatat-tcttcctttatacattttatagtttat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12231664 82 + 20526591 ttgtttcttctcatgattaccctactgtctataagtaacaggcttagcatgatat-tcttcctttatacattttatagtttat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119204588 82 + 128539186 ttgtttcttctcatgattaccctactgtctataagtaaccggcttagcatgatat-tcttcctttatacattttatagtttat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 524708 82 + 6255621 ttgtttcttctcatgattaccctactgtctataagtaacaggcttagcatgatat-tcttcctttatacattttatagtttat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4579916 82 - 8658521 ttgtttcttctcatgattaccctactgtctataagtaacaggcttagcatgatat-tcttgctttatacattttatagttcat i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 428312 77 - 9212255 ttgtttcttctgatga-----ctagtttctataagtaacaggcttagcgtgatat-tcttcctttacacattttatggtttct i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2843621 77 + 4466143 ttgtttcttctgatga-----ctagtatctataagtaacaggcttagcatgatat-tcttcctttatacattttatggtttat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1549289 77 + 5364348 ttgtttcttctgatga-----ctagtatctataagtaacaggcttagcatgatat-tcttcctttatacattttatggtttat i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9446743 83 - 31815103 ttgtttttcctgatgattaccgtagcatctgtaagtaatatgctcagcatgctgtctcttcctttatacattttatagctcat i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4267966 74 + 7922563 ttgctttttctgatgattaccatagtaggtataagcaatgtggtctgcatgatatttcttcctttatacatttt--------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33132483 73 - 38964690 -ttattcttctgattattatcctggtgtctgtaaacaacacacttagcatgctat-tccttc-ctatcaagtttac------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 808703 72 - 1116856 ttgtttcttctggaagttacctcggtatttgtaagtactatgcccagcatg---t-tctttctttatcaagtttac------- i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124790032 247 + 151834684 I e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I e calJac3.chr9 114785706 0 + 124281992 C a score=1377761.000000 s hg38.chr12_KI270834v1_alt 38503 112 + 119498 acattatctgt-------tgactgactgctacaaaagtgagaattcatctcttataccactaacg------------tcagaatagtatattgctaagttggttaa--cagt-agataatgtttacattataat s panTro5.chr12 127324862 112 + 137163284 acattatctgt-------tgactgactgctacaaaagtgagaattcatctcttgtaccactaacg------------tcagaatagtatattgctaagttggttaa--cagt-agataatgtttacattataat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125675695 112 + 135337776 acattatctgt-------tgactgactgctacaaaagtgagaattcatctcttgtaccactaacg------------tcagaatagtatattgctaagttggttaa--cagt-agataatgtttacattataat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8189076 112 - 8369578 acattatctat-------tgactgactgctacaaaagtgagaaTTCATCTCTTATACCACTAACG------------TCAGAATAGTATATTGCTAAGttggttaa--cagt-agataatgtttacattataat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97836860 110 + 106955855 acattatctat-------tgactgactgctacaaaaatgagaattcatctc--ataccactaacg------------tcagaatagtatattgctaagttggttaa--cagt-agataatgtttacattataat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123961450 112 + 133663169 acattatctat-------tgactgactgctacaaaagtgagaattcatctcttataccactaaca------------tcagaatagtatattgctaagttggttaa--tagt-agataatgtttacattataat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128209078 112 + 137757926 acattatctat-------cgactgactgctacaaaagtgagaattcatctcttATACCACTAACG------------TCAGAATAGTATATTGCTAAGttggttaa--tagt-agataatgtttacattataat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10608979 112 - 16319837 acattatctat-------cgactgactgctacaaaagtgagaattcatctcttATACCACTAACG------------TCAGAATAGTATATTGCTAAGttggttaa--tagt-agataatgtttacattataat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12231746 112 + 20526591 acattatctgt-------cgactgactgctacaaaagtgagaattcatctcttataccactaacg------------tcagaatagtgtattgctaagttggttaa--cagt-agataatgtttacgttataat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119204670 112 + 128539186 acattatctat-------cgactgactgctacaaaagtgagaattcatctcttATACCACTAACG------------TCAGAATAGTATATTGCTAAGttggttaa--cagt-agataatgtttacattataat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 524790 112 + 6255621 acattatctgt-------cgactgactgctacaaaagtgagaattcatctcttataccactaacg------------tcagaatagtatattgctaaattggttaa--cagt-agataatgtttacattataat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4579998 112 - 8658521 acattatctat-------cgactgactgctacaaaagtaagaattcatctcttATAACACTAACG------------Tcaaaatagtatattgctaagttggttaa--cagt-agataatgtttacattataat i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 428389 112 - 9212255 acattatttat-------tgactgactgctacaaaagtgagaattcatctcttacaccattaaca------------tcagaatagtatattgctaagttggttca--cagt-acataatgtttacatgataat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2843698 112 + 4466143 acattatttat-------tgactgatggctacaaaagtgagaattcatctcttACACCATTAACA------------TCAGAATAGTATATTGCTAAGttggttaa--cagt-acataatgtttacattataat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1549366 112 + 5364348 acgttatttat-------tgactgactgctgcaaaagtgagaattcatctcttATACCATTAACA------------TTAGAATAGTATATTGCTAAGCtggttaa--cagt-acataatgtttacattataat i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9446826 123 - 31815103 acatcatctat-------tgactggctgctacgaaagtgagaagtcatcgctcatgccgccctcc-acctcccctcctcAGGACAGCATATTGTTGAGCtggttaa--cagc-aaacagtgttgacattattaa i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4268040 119 + 7922563 -----atctat-------tgactgactgctatgaaagtgagaattcatctcttaaaccactagctaacctcccctcctcaggatagtatattgttaagtcagttaa--taat-aagccatgtttacattattat i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124790279 131 + 151834684 ACATCACGTGTTGCTTAATGACCGAGCCCTCTGAATGTGAGGATTTGTTTGGTGCATCAGTCACCAGCCCTCCCTCCTCAGAATATCATATTGCTGAACTGTTTGA--CAGT-ACACCCTAGTTACATGGTTTC i mm10.chr5 I 247 C 0 s canFam3.chr26 33132556 124 - 38964690 acagtatctat-------gctataactgctatgaaagtgagagttcatctc--ataccactagtt-cactcccctcctcaGAATAATATATTGCTAAATCAgttgaatcagtaaaaccgtatttgcattattat i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 808775 104 - 1116856 acattatctgt-------tgactgactgcta------tgaagagtcatctcttataccaccagcc-------taccccctcaacagtatatcacta-------tat--cagt-aaatagtagttatatgattgt i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I e calJac3.chr9 114785706 0 + 124281992 C a score=193999.000000 s hg38.chr12_KI270834v1_alt 38615 12 + 119498 gaagatagaaat s panTro5.chr12 127324974 12 + 137163284 gaagatagaaat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125675807 12 + 135337776 gaagatagaaat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8189188 12 - 8369578 gaagatagaaat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97836970 12 + 106955855 gaagatagaaat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123961562 12 + 133663169 gaagatagaaat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128209190 12 + 137757926 gaagatagaaat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10609091 12 - 16319837 gaagatagaaat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12231858 12 + 20526591 aaagatagaaat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119204782 12 + 128539186 gaagatagaaat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 524902 12 + 6255621 gaagatagaaat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4580110 12 - 8658521 gaagatagaaat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114785706 12 + 124281992 aaagacagaaat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 428501 9 - 9212255 ---gacagaaat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2843810 12 + 4466143 gaagacagaaat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1549478 12 + 5364348 gaaggcagaaat i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9446949 12 - 31815103 gaagatagaaat i micMur3.chr21 C 0 I 250 s otoGar3.GL873618 4268159 12 + 7922563 gaagatagaaat i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124790410 12 + 151834684 GAATATGGAAAT i mm10.chr5 C 0 C 0 s canFam3.chr26 33132680 12 - 38964690 gaatatggaaat i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 808879 12 - 1116856 gaatatggaaat i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I a score=758984.000000 s hg38.chr12_KI270834v1_alt 38627 57 + 119498 --aatttactgaagaaccaactaatatactacgattacatttactt--------tcttttagagcca s panTro5.chr12 127324986 56 + 137163284 ---atttactgaagaaccaactaatatactacgattacatttactt--------tcttttagagcca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125675819 56 + 135337776 ---atttactgaagaaccaactaatatactacgattacatttactt--------tcttttagagcca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8189200 56 - 8369578 ---atttactgaagaaccaactaatatactacgattacatttactt--------tcttttagagcca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97836982 56 + 106955855 ---atttactgaagaaccaactaatatactgtgattacatttactt--------tcttttagagcca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123961574 56 + 133663169 ---atttactgaagaaccaactaatatactgtgattacatttactt--------tcttttagagcca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128209202 56 + 137757926 ---atttactgaagaaccaactaatatactgtgattacatttactt--------tcttttagagcca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10609103 56 - 16319837 ---atttactgaagaaccaagtaatatactgtgattacatttactt--------tcttttagagcca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12231870 56 + 20526591 ---atttactgaagaaccaactaatatactgtgattacatttactt--------tcttttagagcca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119204794 56 + 128539186 ---atttactgaagaaccaactaatatactgtgattacatttactt--------tcttttagagcca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 524914 56 + 6255621 ---atttactgaagaaccaactaatatactgtgattacatttactt--------tcttttagagcca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4580122 56 - 8658521 ---atttactgaagaaccaactaatatactgtgattacatttactt--------tcttttagagcca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114785718 64 + 124281992 ---atttactgaataaccaactaatatattatgattacatttactctcttttttttttttagagccc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 428510 60 - 9212255 ---atttactcaagaaccaactaatatactatgattacatttactc----tttcttttttagagcca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2843822 62 + 4466143 ---atttactgaagaaccaactaatatactatgattacatttactc--ttttttttttttagagcca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1549490 63 + 5364348 ---atttactgaagaaccaactaatatactatgattacatttactc-tttttttttttttagagcca i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4268171 56 + 7922563 ---attgactgcagagccaactggtatattgtgattacatttactt--------tcttttagaacca i otoGar3.GL873618 C 0 I 173 s mm10.chr5 124790422 55 + 151834684 ---ATTTACTGTAGAGCCAGCTAATATACTGTAGTT-CATTCTTTG--------CCTTTTAGGACCA i mm10.chr5 C 0 I 2 s canFam3.chr26 33132692 56 - 38964690 ---atttactgtagggccagctagtatactgctattatgtttactt--------tcttttagagcct i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 808891 55 - 1116856 attatttactacag----aactaggatactgtgcttaagttaactt--------tcttttagagtta i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9446961 250 - 31815103 I e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I a score=659810.000000 s hg38.chr12_KI270834v1_alt 38684 73 + 119498 tttccttt---g--------------------------------------------------------------------------------------------------------------------tctagagtttgtaattgccttcc-----------------------------------------------------tttttttccctcacactatttgcctttattttaatctcatt-- s panTro5.chr12 127325042 71 + 137163284 tttccttt---g--------------------------------------------------------------------------------------------------------------------tctggagtttgtagttgccttcc-----------------------------------------------------tttttttccctcacactatttgcctttattttaacctca---- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125675875 71 + 135337776 tttccttt---g--------------------------------------------------------------------------------------------------------------------tctggagtttgtagttgccttcc-----------------------------------------------------tttttttccctcacactatttgcctttattttaacctca---- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8189256 73 - 8369578 tttcgttt---g--------------------------------------------------------------------------------------------------------------------tctggagtttgtaattgccttcc----------------------------------------------------ttttttttccctcacactatttgcctttattttaacctca-t-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97837038 71 + 106955855 tttgcttt---g--------------------------------------------------------------------------------------------------------------------tctggagttcgtaattgccttcc-----------------------------------------------------ttttTTTCCCGCACACTATTTGCCTTTATTTTAACCTCA---- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123961630 74 + 133663169 tttacttt---g--------------------------------------------------------------------------------------------------------------------tctggagtttgtaattgccttcc--------------------------------------------------tttttttttttcctcacactatttgcctttatcttaacctca---- i rheMac8.chr11 C 0 I 262 s macFas5.chr11 128209258 81 + 137757926 tttgcttt---g--------------------------------------------------------------------------------------------------------------------tctggagtttgtaattgccttcct-------------------------------------------ttttttttttttttttttctcaccctatttgcctttttcttaacctca---- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10609159 79 - 16319837 tttgcttt---g--------------------------------------------------------------------------------------------------------------------tctggagtttgtaattgccttcc---------------------------------------------ttttttttttttttttcctcacactatttgcctttatcttaacctca---- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12231926 75 + 20526591 tttgcttt---g--------------------------------------------------------------------------------------------------------------------tctggagtttgtaattgccttcc-------------------------------------------------ttttttttttttcctcacactatttgcctttatcttaacctca---- i cerAty1.NW_012001186v1 C 0 I 2 s chlSab2.chr11 119204850 77 + 128539186 tttgcttt---g--------------------------------------------------------------------------------------------------------------------tctggagtttgtaattgcct-----------------------------------------------tttttttttttttttttcctcacactatttgcctttatcttaacctca---- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 524970 122 + 6255621 tttgcttt---g--------------------------------------------------------------------------------------------------------------------tctggagtttgtaattgccttccttttttttttttttttttttatctttgttggtttaaagtcc--gttttttttttttttttttctcacactatttgcctttatcttaacctca---- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4580178 78 - 8658521 tttgcttt---g--------------------------------------------------------------------------------------------------------------------tctggagtttgtaattgccttcc----------------------------------------------ttttttttttttttccctcacactatttgcctttatcttaacctca---- i colAng1.NW_012116043v1 C 0 I 2 s calJac3.chr9 114785782 69 + 124281992 tttgcttt---g--------------------------------------------------------------------------------------------------------------------tctagagtttgtaattgccttcc------------------------------------------------------tttttttcctcacactgtttgcctttatcttaacctc----- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 428570 69 - 9212255 tttgcttt---g--------------------------------------------------------------------------------------------------------------------tctggagtttgtaattgcctacc------------------------------------------------------ttttacccctcacactctttgcctttatcttaacctc----- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2843884 69 + 4466143 tttgcttt---g--------------------------------------------------------------------------------------------------------------------tctggagtttgtaattgcctacc------------------------------------------------------ttttttccctcacactgtttgcctttatcttaacctc----- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1549553 69 + 5364348 tttgcttt---g--------------------------------------------------------------------------------------------------------------------tctggagtttgtaattgccttcc------------------------------------------------------tttttttcctcacactctttgcctttatcttaacctc----- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4268400 221 + 7922563 cttgccct---aggctcagtcccttccagctgggactgcaggcacctgccacaatgcctggctattttgttgttgttgtaactgtcattgttatttggcaaacctgggctgcatttgaacccaccagctctggtgtatgtggctggcgccc-------------------tagccactgagcaacagatgccaagtcTGCCTGCCTTTTTTCCTTCATACCGTTTGTCTTTATCTTATCCTCA---- i otoGar3.GL873618 I 173 I 2 s mm10.chr5 124790479 52 + 151834684 TTTTTTTT---G------------------------------------------------------------------------------------------------------------------------------GTAGTGGCCTTCC---------------------------------------------------------TTTTTCTTATGCTGTTTGCCTTCATCTTCA--------- i mm10.chr5 I 2 C 0 s canFam3.chr26 33132750 71 - 38964690 ttttctttttgg--------------------------------------------------------------------------------------------------------------------cctgaagtttgtagttgccttct-------------------------------------------------------tttttctttCACACTATTTGCCTTGAACTTTTCTTT----- i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 808946 73 - 1116856 tttgcatt---t--------------------------------------------------------------------------------------------------------------------cctgaagtttctaattaccttct-----------------------------------------------------tttttttcccttgcactatttgctttttccttatcctta--tt i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9446961 250 - 31815103 I e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I a score=1297704.000000 s hg38.chr12_KI270834v1_alt 38757 121 + 119498 ttttttttt-----aaa--ctttctatcatatcaagtattctgtcgagcccc----tttat----ttcctgga----ggctattctccaaa-------gccctctatct----cttaggatatggactgctcg-------------tttcataggtgtggccct s panTro5.chr12 127325113 120 + 137163284 -tttttttt-----aaa--ctttctatcatatcaagtattctgtcgagcccc----tttat----ttcctgga----ggctattctccaaa-------gccctctgtct----cttaggatatggactacttg-------------tttcataggtgtggccct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125675946 119 + 135337776 --ttttttt-----aaa--ctttctatcatatcaagtattctgtcgagcccc----tttat----ttcctgga----ggctattctccaaa-------gccctctgtct----cttaggatatggactacttg-------------tttcataggtgtggccct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8189329 121 - 8369578 ttttttttt-----aaa--ctttctatcatatcaagtattctgtcgagcccc----tttac----ttcctgga----ggctattctccaaa-------gccctctatct----cttaggatatggactgcttg-------------tttcataggtgtggccct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97837109 129 + 106955855 -TTTTTTTTTAAAAAAA--CTttctatcatatcaagtattctgtcgagtccc----tttat----ttcctgga----gactattctccaaa-------gccctctatctcctacttagggtatggactgcttg-------------tttcataggcgtggccct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123961966 125 + 133663169 ttttttttt-----aaa--ctttctatcatatcaagtattctgttgagcccc----tttat----ttcctgga----gactattctccaaa-------gccctctatctcctgcttaggatatggactgcttg-------------tttcataggtgtggccct i rheMac8.chr11 I 262 C 0 s macFas5.chr11 128209339 124 + 137757926 -ttttttta-----aaa--ctttctatcatatcaagtattctgttgagcccc----tttat----ttcctgga----gactattctccaaa-------gccctctatctcctgcttaggatatggactgcttg-------------tttcataggtgtggccct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10609238 124 - 16319837 -ttttttaa-----aaa--ctttctatcatatcaagtattctgttgagcccc----tttat----ttcctgga----gactattctccaaa-------gccctctatctcctgcttaggatatggactgcttg-------------tttcataggtgtggccct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232003 122 + 20526591 ---ttttaa-----aaa--ctttctatcgtatcaagtattctgtcgagtccc----tttat----ttactgga----gactattctccaaa-------gccctctatctcctgcttaggatatggactgcttg-------------tttcataggtgtggccct i cerAty1.NW_012001186v1 I 2 C 0 s chlSab2.chr11 119204927 124 + 128539186 -tttttaaa-----aaa--gtttctatcatatcaagtattctgtcgagtccc----tttat----ttcctgga----gactattctccaaa-------gccctctatctcctgcttaggatatggactgcttg-------------tttcataggtgtggccct i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 525092 124 + 6255621 -ttttttaa-----aaa--ctttctatcatatcaagtattctgtcgagtccc----tttat----ttactgga----gactattctccaaa-------gccctctatctcctgcttaggatatggactgcttg-------------tttcataggtgtggccct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4580258 122 - 8658521 ---ttttta-----aaa--ctttgtatcatatcaagtattctgtcgagctcc----tttat----ttcctgga----gactattctccaaa-------gccctctatctcctgcttaggatatgcactgcttg-------------tttcataggtgtggccct i colAng1.NW_012116043v1 I 2 C 0 s calJac3.chr9 114785851 122 + 124281992 ---ttttta-----aaa--ctttctatcatatcaagtattctgttgagcctc----tttat----ttcctgga----gactattctccaaa-------gccttctatttcctgcttaggatacagactgcttg-------------tttcataggtgtggccct i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 428639 122 - 9212255 ---tttttt-----aaa--ctttctatcatatcaagtattctgttgagcctc----tttat----ttcctgga----gaccattctccaaa-------gcctgctatttcctgcttaggatacagactgcttg-------------ttttataggtgtggccct i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2843953 122 + 4466143 ---tttttt-----aaa--ctttctatcatatcaagtattctgttgagcctc----tttat----ttcctgga----gactgttctccaaa-------gccttctatttcctgcttaggatatggactccttg-------------tttcataggtgtggccct i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1549622 119 + 5364348 ---ttt--------aaa--ctttctatcacatcaagtattctgttgagcctc----tttat----ttcctgga----gactattctccaaa-------gccttctatttcctgcttagggtacggactgcttg-------------tttcataggtgtggccct i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4268623 104 + 7922563 -TGTTTTTT----------------------------GTTCAGTTGAGCTCC----TCTGT----TTCCTGTAGACTGACTATGCTCTAAG-------GCCTTCAATATT---CTTACAGCATGGAATGCTTG-------------TTACATAGCTGTGGCCCT i otoGar3.GL873618 I 2 C 0 s mm10.chr5 124790531 127 + 151834684 ----TTAAG-----AAATTCTTTCTATCATGTCAAGAATT-----GGGCCCTCCTGTTTTT----TCCTTATA----GACCACTTTCCAAGTCTTCCCTCTCCCCATTTCCTGATCACCATACCAAGGGCTTG-------------TT-CATAGCCGTGCCTT- i mm10.chr5 C 0 C 0 s canFam3.chr26 33132821 55 - 38964690 GTTTTTTTC-----AAA--CTTTTTATCGTATC----------------CTC----T--------------------G-----------AA--------------------------------------CTTG-------------TTTCACAGAAGTGGCCAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 809019 142 - 1116856 tctctttcc-----aaa--ccttctaccatattgtgtgttctgttgttcttt----ttttttttcttcttgga----gaccattctccatg-------gccctcgaccccttgcttataacatgaactgcttgccctctgggcatatttcacagctttgacctt i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9446961 250 - 31815103 I e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I a score=2497143.000000 s hg38.chr12_KI270834v1_alt 38878 206 + 119498 gggacttgctttcacTCTAGCTTAGTATTAATGCCATTTCT--------AA------CTGTAAAATTTGTCAGTG----CATGA------AATATTTGTACATAT--------------TATTATCTGATTAGCTGACTGAACTATA-----TT--TTTTTTGTAGAGAGAGCTAGGTTTGTTAATA-TATCTGGTTTAGCTTTGTACTTATGAAGTTTTATACTGCCTGATCTCAACTATGTT-AAAAAA--AT s panTro5.chr12 127325233 205 + 137163284 gggacttgctttcacTCTAGCTTAGTATTAATGCCATTTCT--------AA------CTGTAAAATTTGTCAGTG----CATGG------AATATTTGTACATAT--------------TATTATCTGATTAGCTGACTGAACTAT------TT--TTTTTTGTAGAGAGAGCTAGGTTTGTTAATA-TATCTGGTTTAGCTGCGTACTTACGAAGTTTtatactgcctgatctcaactatgtt-aaaaaa--at i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676065 205 + 135337776 gggacttgctttcacTCTAGCTTAGTATTAATGCCATTTCT--------AA------CTGTAAAATTTGTCAGTG----CATGG------AATATTTGTACATAT--------------TATTATCTGATTAGCTGACTGAACTAT------TT--TTTTTTGTAGAGAGAGCTAGGTTTGTTAATA-TATCTGGTTTAGCTGTGTACTTATGAAGTTTtatactgcctgatctcaactatgtt-aaaaaa--at i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8189450 206 - 8369578 gggacttgctttcacTCTAGCTTAGTATTAATGCCATTTCT--------AA------CTGTAAAATTTGTCAGTG----CATGG------AATATTTGTACATAT--------------TATTATCTGATTAGCTGACTGAACTATA-----TT--TTTTTTGTAGAGAGAGCTAGGTTTGTTAATA-TATCTGGTTTAGCTGTGTACTTATGAAGTTTtatactgcctgatctcaactatgtt-aaaaaa--at i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97837238 208 + 106955855 gggacttgctttcacTCTAGCTTAGTATTAATCCCATTTCT--------AA------CTGTAAAATTTGTCAGTG----CATGG------AATATTTGTACA-----------------TATTATCTGATTAGCTGACTGAATTATATATATTT--TTTTTTGTAGAGAGAGCTAGGTTTGTTAATA-CATCTGGTTTAGCTATGTACTTATGAAGTTTtatactgcctgatctcaactatgtt-aaaaaa--at i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962091 205 + 133663169 gggacttgctttcacTCTAACTTAGTATTAATGCCATTTCT--------AA------CTGTAAAATTGGTGGGTA----CATGG------AATATTTGTACATAT--------------TACTATCTGATTAGCTGACTGAACTAT------AT--TTTTTTGTAGAGAGAGCTAGGTTTGTTAATA-TATCTGGTTTAGCTGTGTACTTATGAAGTTTTTTACTGCCTGATCTCAACTATTTT-AAAAAA--AT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128209463 205 + 137757926 gggacttgctttcacTCTAACTTAGTATTAATGCCATTTCT--------AA------CTGTAAAATTAGTGGGTA----CATGG------AATATTTGTACATAT--------------TACTATCTGATTAGCTGACTGAACTAT------AT--TTTTTTGTAGAGAGAGCTAGGTTTGTTAATA-TATCTGGTTTAGCTGTGTACTTATGAAGTTTTATACTGCCTGATCTCAACTATTTT-AAAAAA--AT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10609362 205 - 16319837 gggacttgctttcacTCTAACTTAGTATTAATGCCATTTCT--------AA------CTGTAAAATTGGTGGGTA----CATGG------AATATTTGTACATAT--------------TACTATCTGATTAGCTGACTGAACTAT------AT--TTTTTTGTAGAGAGAGCTAGGTTTGTTAATA-TATCTGGTTTAGCTGTGTACTTATGAAGTTTtatactgcctgatctcaactatttt-aaaaaa--at i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232125 206 + 20526591 gggacttgctttcacTCTAACTTAGTATTAATGCCATTTCT--------AA------CTGTAAAATTGGTGGGTA----CATGG------AATATTTGTACATAT--------------TACTATCTGATTAGCTGACTGAACTAT------AT--TTTTTTGTAGAGAGAGCTAGGTTTGTTAATATTATCTGGTTTAGCTGTGTACTTATGAAGTTTtatactgcctgatctcaactatgtt-aaaaaa--at i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205051 206 + 128539186 gggacttgctttcacTCTAACTTAGCATTAATGCCATTTCT--------AA------CTGCAAAATTGGTGGGTA----CATGG------AATATTTGTACATAT--------------TACTATCTGATTAGCTGACTGAACTAA------AT--TTTTTTGTAGAGAGAGCTAGGTTTGTTAATAGTTTCTGGTTTAGCTGTGTACTTATGAAGTTTtatactgcctgatctcaactatgtt-aaaaaa--at i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 525216 206 + 6255621 gggacttgctttcacTCTAACTTAGTATTAATGCCATTTCT--------AA------CTGTAAAATTGGTGGGTA----CATGG------AATATTTGTACATAT--------------TACTATCTGATTAGCTGACTGAACTAT------AT--TTTTTTGTAGAGAGAGCTAGGTTTGTTAATATTATCTGGTTTAGCTGTGTACTTATGAAGTTTtatactgcctgatctcaactatgtt-aaaaaa--at i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4580380 219 - 8658521 gggacttgctttcacTCTAACTTAGTATTAATGCCATTTCT--------AA------CTGTAAAATTGGTGGGTA----CATGG------AATATTTGTACATATCTAGTACATATTTGTACTATCTGATTAGCTGACTGAACTAT------AT--TTTTTTGTAGAGAGAGCTAGGTTTGTTAATA-TATCTGGTTTAGCTGTGTCCTTATGAAGTTTTATACTGCCTGATCTCAACTATGTT-AAAAAA--AT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114785973 199 + 124281992 gggacttgctttca----ctcttaGTATTACTGCGATTCCT--------AA------CTGTAAAATTTGTCAGTG----CATGA------AATATTTGTACATGC--------------TGTTATCTGATGAGCTGACTGAACTGT------AT--TTTTTTGTAGAGAGAGCTAGGTTTGTTAATA-TATCTGGTTTAGTTGTATACTTATGAAGTTTTATACTACCTGATCTCAACTATGTTAAAAAA----- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 428761 201 - 9212255 gggacttgcttccactctcTCTTAGTATTGATGCCACTCCT--------AA------CTGTAAAATTCATCAGTG----CATGA------AATATTTGTACATAT--------------TATTATCTGATGAGCTGACTAAACTGT------A---TTTTTTGTAGAGACAGCTAGGTTTGTTAATA-TATCTGGTTTAGTTGTATACTTATGAAGTTGTATACTACCTGATCTCAACTATGTT-AAAAG----- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844075 198 + 4466143 gggacttgctttca----cTCTTAGTATTAATGCCATTCCT--------AA------CTGTAAAATTTGTCAGTG----CATGA------AATATTTGTACATAT--------------TATTATCTGATGAGCTGACTGAACTGT------AT--TTTTTTGTAGAGAGAGCTAGGTTTGTTAATA-TATCTGGTTTAGTTGTATACTTATGAAGTTTTATACTACCTGATCTCAACTATGTT-AAAAA----- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1549741 201 + 5364348 gggacttgctttcacTCTATCTTAGTATTAATGCCATTCCT--------AA------CTGTAAAATTTGTCAGT-----CACGA------AATATTTGTACATAT--------------TATTATCTGATGAGCTGATCGAACTGT------AT--TTTTTTGTAGAGAGAGCTATGTTTGTTAATG-TAGCTGGTTTAGTTGTATACTTATAAAGTTTTATACTACCTGATCTCAACTATATT-AAAAA----- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9447211 214 - 31815103 AGGACTTGCTTTCACTCTAACTCAGTATTGGTGCCATGTCT--------ATACTGGCTTGCAAGATCTGTCAGTG----CACG-------AGTATTTGCACATCT--------------CTTTATCTGATTAGCAGACTGAACTAC------GTCGTCTTTCCTAGGAAGAGATAGGCTTGTTAATA-TTGCTGATTTAGCTATGCACTTACTGAGTTTTATACAACCTGATCTGAACTATGTT-AAAAAAAAAA i micMur3.chr21 I 250 C 0 s otoGar3.GL873618 4268727 209 + 7922563 GGGACATGCTTTCACTCTGACTTAACATTAACATTATTCCT--------AAATTGGCCTGCAAAATTTGTCAGCA----CATA-------AGTATTTGTACATAT--------------CATTATCTG-TTGGCAGATGGAACTAT------GTCTTCTTTCATAGAAAGAGATAGGATTGTTAACA-TTGCTGGTTTAGCTATGTACTTATTATGTTTTATACTATCTTATCTGAACTATGTT-AAAAAA---- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124790658 188 + 151834684 AGGACTCGCTCTTGCCCCATCTTGATAGTGACATCATTTTTTTTTTTCAGT------CTGCAGAATTCACTGGTG----CATTG--------TGGTTGTGCAAAC--------------TGTGAACC---------ATGGAACCAT------G---TCTTTTATGAAGAGAGACA--TCTGTCAATG-T-----GCTTAACTTTAGACGTAC---ACTTTGTGATACCCGAACC---CTGTCTC-AAAAAA--AT i mm10.chr5 C 0 I 603 s canFam3.chr26 33132876 167 - 38964690 GAGATTTGCTTTCACTTTGGCTTGATGTCAATGCTGTTTCT--------AACTTGGCCTGCAAACTTTGTTGATG----CATGG-------GTATTTGTGCATAT--------------CATTATGTTATTGGCTGACTGAACTGTC-----TT--TTCTTTTCATAGGGAGATGGATGTGTTAATA-TTGTTGGTTTAGATGCATAC----------------------------------------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 809161 217 - 1116856 gagagtttctttcacTTCAGCTTAATATTAATGCATTTCTT--------AACTTGGCCTGAAAAATTTATCTGTGCAGCCATGGTACACAGGCATTTGTGCATAT--------------TGTTATCTGATTGGCTAATTGAAATGT------GT--CTTTTTTCTTATAGAGCTGA----GCTAACA-TTTCTGGCTTAGATGCTTACTTACTATGATTTATATTAGCTGATCTCAATTATGTT-AAAAAG--AT i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I a score=140747.000000 s hg38.chr12_KI270834v1_alt 39084 12 + 119498 AATAAagaaaaa- s panTro5.chr12 127325438 12 + 137163284 aataaagaaaaa- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676270 12 + 135337776 aataaagaaaaa- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8189656 12 - 8369578 aataaagaaaaa- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97837446 12 + 106955855 aataaagaaaaa- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962296 12 + 133663169 AATAAagaaaaa- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128209668 12 + 137757926 AATAAagaaaaa- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10609567 12 - 16319837 aataaagaaaaa- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232331 12 + 20526591 aataaagaaaaa- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205257 12 + 128539186 aataaagaaaaa- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 525422 12 + 6255621 aataaagaaaaa- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4580599 12 - 8658521 AATAAagaaaaa- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786172 12 + 124281992 AATAAagaaaaa- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 428962 12 - 9212255 AATAAACaaaaa- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844273 12 + 4466143 AATAAagaaaaa- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1549942 12 + 5364348 AATAAagaaaaa- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9447425 12 - 31815103 ACAAAagcaaaa- i micMur3.chr21 C 0 C 0 s dasNov3.JH568189 809378 12 - 1116856 -ACAAAGGAAAAA i dasNov3.JH568189 C 0 I 1671 e mm10.chr5 124790846 603 + 151834684 I e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I e canFam3.chr26 33133043 0 - 38964690 C e otoGar3.GL873618 4268936 0 + 7922563 C a score=1270930.000000 s hg38.chr12_KI270834v1_alt 39096 105 + 119498 agattgactggaaaacactccaaaacaacatttgtttctgggtggtggga-tttggataacttattttcttctttatatttttcta-ttttttgtcagatattctac s panTro5.chr12 127325450 105 + 137163284 agattgactggaaaacactccaaaacaacatttgtttctgggtgatggga-tttggataacttactttcttctttatatttttcta-ttttttgtcagatattctac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676282 105 + 135337776 agattgactggaaaacactccaaaacaacatttgtttctgggtgatggga-tttggataacttactttcttctttatatttttcta-ttttttgtcagatattctac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8189668 106 - 8369578 agattgactggaaaacactccaaaacaacatttgtttctgggtggtggga-tttggataacttattttcttctttatatttttctatttttttgtcagatattctac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97837458 105 + 106955855 agatggactggaaaacactccaaaacgacatctgtttctgggtggtggga-tttggataacttatcttcttctttatactgttcta-ctttttgtcagatattctac i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962308 105 + 133663169 agattgactggaaaacacttcaaaacaacatttgtttctaggtggtggga-tttggataacttattttcttctttatacttttcta-ttttttgtcagatattctac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128209680 105 + 137757926 agattgactggaaaacacttcaaaacaacatttgtttctaggtggtggga-tttggataacttattttcttctttatacttttcta-ttttttgtcagatattctac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10609579 105 - 16319837 agattgactggaaaacacttcaaaacaacatttgtttctaggtggtggga-tttggataacttattttcttctttatacttttcta-ttttttgtcagatattctac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232343 105 + 20526591 agattgactgggaaacacttcaaaacaacatttgtttctaggtggtggga-tttggataacttattttcttctttatacttttcta-ttttttgtcagatattctac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205269 105 + 128539186 agattgactggaaaacacttcaaaacaacatttgtttctaggtggtggga-tttggataacttattttcttctttatacttttcta-ttttttgtcagatactctac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 525434 105 + 6255621 agattgactgggaaacacttcaaaacaacatttgtttctaggtggtggga-tttggataacttattttcttctttatacttttcta-ttttttgtcagatattctac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4580611 105 - 8658521 agattgactggaaaacacttcaaaacaacatttgtttctaggtggtggga-tttggataacttattttcttctttatacttttcta-ttttttgtcagatattctac i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786184 103 + 124281992 agattgaatggaaaacactccaaaacaacatttgtttctgggtggtggga-tttggataacttattttcttctttatacttttgta--tttttgtcagatattc-ac i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 428974 103 - 9212255 agattgaatggaaaacactccaaaacaacatttgtttttgggtggtggga-tttggataatttattttcttctttatacttttcta--tttttgtcagatattc-ac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844285 103 + 4466143 agattgaatggaaaacactccaaaacaacatttgtttctgggtggtggga-tttggataacttattttcttctttatacttttcta--tttttgtcagatattc-ac i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1549954 100 + 5364348 agattgaatggaaaacactccaa---aacatttgtttctgggtggtggga-tttggataacttattttcttctttatacttttcta--tttttgtcagatattc-ac i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9447437 92 - 31815103 agactgaaaggaaaacactcc-acattatatctgtctctgggcggtggga-tttaagtaacttattttcttctat-------------tttttgtCAGATACTCTCC i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4268936 92 + 7922563 -----------AAAACACTCCAAAATGATATTTGTTTCTGGGTCTAGGGA-CTTAAATAACTTATTTTCTTCTTT-TTTTTTTTTA--TTTTTGTCAAGTACACTAC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33133043 91 - 38964690 --------------ATACTCCAGaacaatgtttatttcttggtgttggaattttgaataagttattttctcccctagagttttcta--tttttgtcaaatattctaa i canFam3.chr26 C 0 C 0 e mm10.chr5 124790846 603 + 151834684 I e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I e dasNov3.JH568189 809390 1671 - 1116856 I a score=338108.000000 s hg38.chr12_KI270834v1_alt 39201 28 + 119498 aacgtattaattttcacattaattttat s panTro5.chr12 127325555 28 + 137163284 aacgtattaattttcacattaattttat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676387 28 + 135337776 aacgtattaattttcacattaattttat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8189774 28 - 8369578 aacgtattaattttcacattaattttat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97837563 28 + 106955855 aacttattaattttcacattaattttat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962413 24 + 133663169 aacat----attttcacattaattttat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128209785 24 + 137757926 aacat----attttcacattaattttat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10609684 24 - 16319837 aacat----attttcacattaattttat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232448 24 + 20526591 aacat----attttcacattaattttat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205374 24 + 128539186 aacat----attttcacattaattttat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 525539 24 + 6255621 aacat----attttcacattaattttat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4580716 24 - 8658521 aacat----attttcacattaattttat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786287 28 + 124281992 aacataataattttcacataaattttat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429077 28 - 9212255 aacatattaattttcacattaattttat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844388 28 + 4466143 aacatattaattttcacgttaattttat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550054 27 + 5364348 aacatatt-attttcacattaattttat i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9447529 28 - 31815103 AACATACCCATTTTCACATTAATTTTAT i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4269028 28 + 7922563 AACATATTAATTTTCACTTTAATTTTGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33133134 27 - 38964690 atcatattaattttcacaTTAA-TTTAT i canFam3.chr26 C 0 I 4 s dasNov3.JH568189 811061 28 - 1116856 aAAGTATTAATTTTCACATCAATTATAT i dasNov3.JH568189 I 1671 I 1 e mm10.chr5 124790846 603 + 151834684 I e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I a score=17416.000000 s hg38.chr12_KI270834v1_alt 39229 3 + 119498 aat s panTro5.chr12 127325583 3 + 137163284 aat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676415 3 + 135337776 aat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8189802 3 - 8369578 aat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97837591 3 + 106955855 aat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962437 3 + 133663169 tat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128209809 3 + 137757926 tat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10609708 3 - 16319837 tat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232472 3 + 20526591 tat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205398 3 + 128539186 tat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 525563 3 + 6255621 tat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4580740 3 - 8658521 tat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786315 3 + 124281992 aat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429105 3 - 9212255 aat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844416 3 + 4466143 aat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550081 3 + 5364348 aat i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9447557 3 - 31815103 AGT i micMur3.chr21 C 0 I 156 s otoGar3.GL873618 4269056 3 + 7922563 AGT i otoGar3.GL873618 C 0 I 3 s mm10.chr5 124791449 3 + 151834684 AAT i mm10.chr5 I 603 C 0 s canFam3.chr26 33133165 2 - 38964690 AA- i canFam3.chr26 I 4 C 0 s dasNov3.JH568189 811090 3 - 1116856 AAG i dasNov3.JH568189 I 1 C 0 e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I a score=220505.000000 s hg38.chr12_KI270834v1_alt 39232 21 + 119498 a--gaaaaaCCAAAAAGATGTTA s panTro5.chr12 127325586 21 + 137163284 a--gaaaaaCCAAAAAGATGTTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676418 21 + 135337776 a--gaaaaaCCAAAAAGATGTTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8189805 21 - 8369578 a--gaaaaaCCAAAAAGATGTTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97837594 21 + 106955855 a--gaaaaaCCAAAAAGATGTTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962440 21 + 133663169 a--gaaaaaCTAAAAAGATGTTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128209812 21 + 137757926 a--gaaaaaCTAAAAAGATGTTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10609711 21 - 16319837 a--gaaaaaCTAAAAAGATGTTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232475 21 + 20526591 a--gaaaaaCTAAAAAGATGTTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205401 21 + 128539186 a--gaaaaaCTAAAAAGATGTTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 525566 21 + 6255621 a--gaaaaaCTGAAAAGATGTTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4580743 21 - 8658521 a--gaaaaaCTAAAAAGATGTTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786318 23 + 124281992 aagagaaaaCCAAAAAGTTGTTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429108 23 - 9212255 aagagaaaataaAAAAGTTGTTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844419 23 + 4466143 aagagaaaaCCAAAAAGTTGTTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550084 23 + 5364348 aagagaaaaCCAAAAAGTTGTAA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4269062 21 + 7922563 A--GAAATTTTTAAAAAGTGTTA i otoGar3.GL873618 I 3 I 210 s mm10.chr5 124791452 21 + 151834684 A--AAGTGGCTAGAGAGACGATC i mm10.chr5 C 0 I 3 s canFam3.chr26 33133167 21 - 38964690 A--GAAAACTTTAAAAGGTACTA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 811093 21 - 1116856 A--GAAAAATTAAAAATGTGTTA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9447560 156 - 31815103 I e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I a score=1428214.000000 s hg38.chr12_KI270834v1_alt 39253 128 + 119498 CATCAGAAGTGTGTAATCTTCTCATCAAAATC-CCAGGTGTTCAGTTAAAAAGCTCAT--GGAAGCTGTGTTGAT--TTTGGTATTATTTGGATTTCATGCAGTTGT-AAAAACTTTCCATAAGAGAAGGTCCT s panTro5.chr12 127325607 128 + 137163284 CATCAGAAGTGTGTAATCTTCTCATCAAAATC-CCAGGTGTTCAGTTAAAAACCTCAT--GAAAGCTGTGTTGAT--TTTGGTATTATTTGGATTTCATGCAGTTGT-AAAAACTTTCCATAAGAGAAGGTCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676439 128 + 135337776 CATCAGAAGTTTGTAATCTTCTCATCAAAATC-CCAGGTGTTCAGTTAAAAACCTCAT--GAAAGCTGTGTTGAT--TTTGGTATTATTTGGATTTCATGCAGTTGT-AAAAACTTTCCATAAGAGAAGGTCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8189826 128 - 8369578 CATCAGAAGTGTGTAATCTTCTCATCAAAATC-CCAGGTGTTCAGTTAAAAACCTCAT--GAAAGCTGTGTTGAT--TTTGGTATTATTTGGATTTCATGCAGTTGT-AAAAACTTTCCATAAGAGAAGGTCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97837615 128 + 106955855 CATCAGAAGTGTGTAATCTTCTCATCAAAATC-CCAGGTGTTCATTTAAAAACCTCAT--GAAAGCTGTGTTCAT--TTTGGTATTATTTGGATTTCATGCAGTTGT-AAAAGCTTTCCATAAGAGAAGGTCCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962461 128 + 133663169 CATCAGAAGTGTGTAATCTTCTCATCAAAATC-CCAGGTGTTCAGTTAAAAACCTCAT--GAAAGCTGTGTTCAT--TTTGATATGATTTGGATTTCATGCAGTTGT-AAAAACTTTCCATAAGAGAAGGTCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128209833 128 + 137757926 CATCAGAAGTGTGTAATCTTCTCATCAAAATC-CCAGGTGTTCAGTTAAAAACCTCAT--GAAAGCTGTGTTCAT--TTTGGTATGATTTGGATTTCATGCAGTTGT-AAAAACTTTCCATAAGAGAAGGTCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10609732 128 - 16319837 CATCAGAAGTGTGTAATCTTCTCATCAAAATC-CCAGGTGTTCAGTTAAAAACCTCAT--GAAAGCTGTGTTCAT--TTTGGTATGATTTGGATTTCATGCAGTTGT-AAAAACTTTCCATAAGAGAAGGTCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232496 128 + 20526591 CATCAGAAGTGTGTAATCTTCTCATCAAAATC-CCAGGTGTTCAGTTAAAAACCTCAT--GAAAACTGTGTTCAT--TTTGGTATGATTTGGATTTCATGCAGTTGT-AAAAACTTTCCATAAGAGAAGATCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205422 128 + 128539186 CATCAGAAGTATGTAATCTTCTCATCAAAATC-CCAGGTGTTCAGTTAAAAACCTCAT--GAAAGCTGCGTTCAT--TTTGGTATGATTTGGATTTCATGCAGTTGT-AAAAACTTTCCATAAGAGAAGATCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 525587 128 + 6255621 CATCAGAAGTGTGTAATCTTCTCATCAAAATC-CCAGGTGTTCAGTTAAAAACCTCAT--GAAAACTGTGTTCAT--TTTGGTATGATTTGGATTTCATGCAGTTGT-AAAAACTTTCCATAAGAGAAGATCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4580764 125 - 8658521 CATCAGAAGTGTGTAA---TCTCATCAAAATC-CCAGGTGTTCAGTTAAAAACCTCAT--GAAAGCTGTGTTCAT--TTTGGTATGATTTGGATTTCATGCAGTTGT-AAAAACTTTCCATAAGAGAAGGTCCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786341 119 + 124281992 CATCAGAAGTGTGTAATCTTCTCATCATAATC-CCAGGTGCTC----------CTCAG-GGAAAGCTGTGTTCGT--CTTGGTATGATTTAGATTTTGTGCAGTTGT-AAAAACTTTGCATAAGAGAAGGTCCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429131 119 - 9212255 CATCAGAAGTGTGTAATCTTCTCATCATAATC-CCAGGTGCTC----------CTCAG-GGAAAGCTGTGTTTGT--CTTGGTATGATTTAGATTCTGTGCAGTTGT-AATAACTTTGCCTAAgagaaggtcct i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844442 109 + 4466143 CGTCAGAAGTATGTAATCTTTTCATCATAATC-CCAGTT---------------------GAAAGCTGTGTTCAT--CTTGGTATGATTTAGATTTTGTGCAGTTGT-AATAACTTTGCCTAAgagaaggtcct i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550107 119 + 5364348 CATCAGAAGTCTATGATCTTCTCATCATAATC-CCAGGTGTTC----------CTCAG-GGAAAGCTGTGTTCGT--CTTGGTATGATTTAGATTTTTTGCAGTTGT-AATAACTTTGCATAAgagaaggtcct i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4269293 129 + 7922563 CATTAGAGATATATAATATTCCCATTATAAAT-CAAGGTATTGAAGCAGAAACTTCAT--GTAAGTTATGTTAAT--TTTGGTATGACTTGCATTTTATGCACTTGTAAAAAAAATTGCTCAAGAAAAGGCCCT i otoGar3.GL873618 I 210 C 0 s mm10.chr5 124791476 118 + 151834684 TGTTTGGCATGGGTAA---TCTCATCATGACCGCCA--TGTTTGTTTAAAAACCTCAC--ATAGGCTATGCCGACTATCTGGTAGGGCTTTGTGTCTTTGGAAATGT-GTACAC--------AGGGAAGGCCCT i mm10.chr5 I 3 C 0 s canFam3.chr26 33133188 124 - 38964690 TATCAGAAATGTATTATCTTTCCATAATAAAC-CT--GTGTTCAATCAGAAGCCTCAT--GAAGGCT--GTTAAT--CTAGGAATGACTTGGATTTTATGCAGTTAT-AAAAATTTGCACAAAGCAAAGGCTTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 811114 126 - 1116856 CATCATAAATGTGCAATCTCCCTATCACAGAC-GTAAGTCCTC----AGAAGCCTTCTCTTGAAACTGTGTTAAT--CTGGGTATGACCTGGGTTTTATATAACTTT-AAAAACTTTACACAACACATGGCTCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9447560 156 - 31815103 I e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I a score=475449.000000 s hg38.chr12_KI270834v1_alt 39381 36 + 119498 TAAACATCTAGTTTATCTTGTGTATAGCTATAGCCA s panTro5.chr12 127325735 36 + 137163284 TAAACATCTAGTTTATCTTGTGTATAGCTATAGCCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676567 36 + 135337776 TAAACATCTAGTTTATCTTGTGTATAGCTATAGCCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8189954 36 - 8369578 TAAACATCTAGTTTATCTTGTGTATAGCTATAGCCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97837743 36 + 106955855 TAAACCTCTAGTTTATCTTGTGTATAGCTATAGCCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962589 36 + 133663169 TAAACATCTAGTTTATCTTGTGTATAGCTGTAGCCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128209961 36 + 137757926 TAAACATCTAGTTTATCTTGTGTATAGCTGTAGCCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10609860 36 - 16319837 TAAACATCTAGTTTATCTTGTGTATAGCTGTAGCCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232624 36 + 20526591 TAAACATCTAGTTTATCTTGTGTATAGCTGTAGCCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205550 36 + 128539186 TAAACATCTAGTTTATCTTGTGTATAGCTGTAGCCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 525715 36 + 6255621 TAAATATCTAGTTTATCTTGTGTATAGCTGTAGTCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4580889 36 - 8658521 TAAACATCTAGTTTATCTTGTGTATAACTGTAGCCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786460 36 + 124281992 TAAGCATCTAGTTTATCTTGTGCACAGCTGTAGCCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429250 36 - 9212255 taaacatctagtttatcttgtgtatagctgtagcca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844551 36 + 4466143 taaacatctagttcatcttgcgcatagctttagcca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550226 36 + 5364348 taaacatctagtttatcttgtgcatagctgtagcca i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9447716 36 - 31815103 TAAATATCTAATCCGTCTTGTCTGTAGCTGTAGACG i micMur3.chr21 I 156 C 0 s otoGar3.GL873618 4269422 36 + 7922563 TAAGCATCTTATCCATCTTGTTTGTAGCTATCACTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124791594 32 + 151834684 --GACAT-TCGTGGACCATGTGT-TAGCAACCACCA i mm10.chr5 C 0 I 17 s canFam3.chr26 33133312 35 - 38964690 TAAACACGTAGTCCAG-TTGTCTGTAGCCATAGACA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 811240 35 - 1116856 TAAACATGGAGTCCAG-TTGTTTATAGTTTTAAACA i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6696156 1173 - 9870158 I a score=3064140.000000 s hg38.chr12_KI270834v1_alt 39417 166 + 119498 TGATTGAT-----TTTCTTTATTTATCCAGGTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATCGACCATACTGGAAAAAATGGGTTAATCAAATACCAAACAAGGTGAAATTTTTTTCTAAA s panTro5.chr12 127325771 166 + 137163284 TGATTGAT-----TTTCTTTATTTATCCAGGTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATCGACCATACTGGAAAAAATGGGTTAATCAAATACCAAACAAGGTGAAATTTTTTTCTAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676603 166 + 135337776 TGATTGAT-----TTTCTTTATTTATCCAGGTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATCGACCATACTGGAAAAAATGGGTTAATCAAATACCAAACAAGGTGAAATTTTTTTCTAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8189990 166 - 8369578 TGATTGAT-----TTTCTTTATTTATCCAGGTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATCGACCATACTGGAAAAAATGGGTTAATCAAATACCAAACAAGGTGAAATTTTTTTCTAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97837779 162 + 106955855 TGATTGAT---------TTTATTTCTCCAGGTTGGAGATCTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAGTATCGACCATACTGGAAAAAATGGGTTAATCAAATACCAAACAAGGTGAAATTTTTTTCTAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962625 166 + 133663169 TGATTGAT-----TTtctttatttctccaggttggagatttacagtatgcctcccctgcaaccgtctctcgatgtggaatggtttATGTGGATCCTAAAAACTTGAAATATAGACCTTACTGGGAAAAATGGGTTAATCAAATACCAAACAAGGTGAAGTTTTTTTCTAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128209997 166 + 137757926 TGATTGAT-----TTTCTTTATTTCTCCAGGTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATAGACCTTACTGGGAAAAATGGGTTAATCAAATACCAAACAAGGTGAAGTTTTTTTCTAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10609896 166 - 16319837 TGATTGAT-----TTTCTTTATTTCTCCAGGTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATAGACCTTACTGGGAAAAATGGGTTAATCAAATACCAAACAAGGTGAAGTTTTTTTCTAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232660 166 + 20526591 TGATTGAT-----TTTCTTTATTTCTCCAGGTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATAGACCTTACTGGGAAAAATGGGTTAATCAAATACCAAACAAGGTGAAGTTTTTTTCTAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205586 166 + 128539186 TGATTGAT-----TTTCTTTATTTCTCCAGGTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATAGACCTTACTGGGAAAAATGGGTTAATCAAATACCAAACAAGGTGAAGTTTTTTTCTAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 525751 166 + 6255621 TGATTGAT-----TTTCTTTATTTCTCCAGGTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGACCCTAAAAACTTGAAATATAGACCTTACTGGGAAAAATGGGTTAATCAAATACCAAACAAGGTGAAGTTTTTTTCTAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4580925 166 - 8658521 TGATTGAT-----TTTCTTTATTTCTCCAGGTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATAGACCTTACTGGGAAAAATGGGTTAATCAAATACCAAACAAGGTGAAGTTTTTTTCTAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786496 165 + 124281992 GGATTGAT-----TTTCTTTGTTTCTCCAGGTTGGAGATTTGCAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAATTTgaaataccgaccatactgggaaaaatgggttaatcaaatacctaacaaggtgaaaac-ttttctaaa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429286 166 - 9212255 ggatcgat-----tttCTTTATTTCTCCAGGTTGGAGATTTACAGTATGCCTCTCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATACCGACCATACTGGGAAAAATGGGTTAATCAAATACCCAACAAGGTGAAAACTTTTTCTAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844587 166 + 4466143 ggattgat-----tttCTTTATTTCTCCAGGTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATACCGACCATACTGGGAAAAATGGGTTAATCAAATCCCCAACAAGGTGAAAACTTTTTCTAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550262 166 + 5364348 tgattgat-----tttCTTTATTTCTTCAGGTTGGAGATTTACAATATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATACCGACCATACTGGGAAAAATGGGTTAATCAAATACCCAACAAGGTGAAAACTCTTTCTAAA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9447752 166 - 31815103 TGACTGAT-----TTTCTTTATTTCTCCAGGTTGGAGATTTGCAGTACGCCTCCCCTGCAACTGTCTCTCGATGTGGGATGGTTTATGTGGATCCTAAAAACTTGAAAtatgaaccatactggaaaaaatgggttaatgaaatacaaaacaaggtaaaaactatttccaaa i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6697329 166 - 9870158 TGATTGAT-----TTTCTTTGCTTCTCCAGGTCGGAGATTTGCAGTACGCCTCCCCTGCCACCGTCTCTCGATGTGGGATGGTTTACGTGGATCCTAAAAACTTGAAATATGAACCGTACTGGAAAAAATGGGTTAATCGAATACAAAACAAGGTGAAAACTATTTCTGAC i proCoq1.NW_012154285v1 I 1173 C 0 s otoGar3.GL873618 4269458 166 + 7922563 TGACTGAT-----TTTCTTCACTTCTCTAGGTTGGAGATTTACAGTATGCATCTCCTGCAACTGTCTCTCGGTGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATCAACCATACTGGAAAAAGTGGGTTAATCAAATACAAAACAAGGTGAAAACTATTTCTAAA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124791643 164 + 151834684 TGAAGGGT-----TTGCTTTCTT--CCCAGGTTGGAGACCTGCAATACGCCTCCCCGGCTACTGTGTCTCGATGTGGGATGGTCTATGTGGACCCTAAGAACCTGAAATACCAACCATACTGGAAGAAATGGCTACAACAGATACAAAACAAGGTGAGCTATGTCCTCAAA i mm10.chr5 I 17 I 30 s canFam3.chr26 33133347 171 - 38964690 TGACTGATTTTTTTTTTTTTATTTCTCCAGGTTGGTGATTTACAGTATGCCTCTCCTGCAACTGTGTCTCGATGTGGAATGGTGTATGTGGATCCTAAAAACTTGAAATATCAACCATTCtggaaaaaatgggttaatgaaatacaaaacaaggtgaaaattatttctaaa i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 811275 166 - 1116856 TGACCAAT-----TTTCTTTATTTCTCCAGGTTGGAGATTTACAGTATGCCTCCCCTGCTACTGTGTCTCGATGTGGGATGGTTTATGTGGATCCTAAAAACTTAAAATATGAGCCATACTGGAAAAAATGGGTTAATCGAAGACAAAACAAGGTGAAAATTATTTCTAAA i dasNov3.JH568189 C 0 C 0 a score=122555.000000 s hg38.chr12_KI270834v1_alt 39583 8 + 119498 ATGAACTT s panTro5.chr12 127325937 8 + 137163284 ATGAACTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676769 8 + 135337776 ATGAACTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190156 8 - 8369578 ATGAACTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97837941 8 + 106955855 ATGAACTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962791 8 + 133663169 ATGAACTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128210163 8 + 137757926 ATGAACTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10610062 8 - 16319837 ATGAACTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232826 8 + 20526591 ATGAACTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205752 8 + 128539186 ATGAACTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 525917 8 + 6255621 ATGAACTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4581091 8 - 8658521 ATGAACTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786661 8 + 124281992 acgaactt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429452 8 - 9212255 ATGAACTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844753 8 + 4466143 ATGAACTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550428 8 + 5364348 ATGAACTT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9447918 8 - 31815103 atgaactt i micMur3.chr21 C 0 I 323 s proCoq1.NW_012154285v1 6697495 8 - 9870158 ACGAACTT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4269624 2 + 7922563 AT------ i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33133518 8 - 38964690 atgaactt i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 811441 8 - 1116856 TTGAACCT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124791807 30 + 151834684 I a score=571571.000000 s hg38.chr12_KI270834v1_alt 39591 42 + 119498 AAATTTATTAG----TATTGATGGCTAGTTGGAT-AACATAGTCCAG s panTro5.chr12 127325945 42 + 137163284 AAAGTTATTAg----tattgatggctagttggat-aacatagtccag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676777 42 + 135337776 AAAGTTATTAg----tattgatggctagttggat-aacatagtccag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190164 42 - 8369578 AAAGTTATTAg----tattgatggctagttggat-aacatagtccag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97837949 42 + 106955855 ACAGTTATTAg----tattgatggctagttggat-aacatagtccag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962799 42 + 133663169 AAAGTTATCAG----TATTGATGGCTAGTTGGAT-AACATAGTCCAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128210171 42 + 137757926 AAAGTTATCAG----TATTGATGGCTAGTTGGAT-AACATAGTCCAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10610070 42 - 16319837 AAAGTTATCAg----tattgatggctagttggat-aacatagtccag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232834 42 + 20526591 AAAGTTATCAg----tgttgatggctagttggat-aacatagtccag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205760 42 + 128539186 AAAGTTATCAg----tattgatggctagttggat-aacatagtccag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 525925 42 + 6255621 AAAGTTATCAg----tattgatggctagttggat-aacatagtccag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4581099 42 - 8658521 AAAGTTATCAg----tattgatggctagttggat-aacatagtccag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786669 42 + 124281992 aaggttattag----tattggtggctagttggat-gacatagtccag i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429460 42 - 9212255 AAAGTTATTAg----tattggtggctagttggat-gacatagtccag i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844761 42 + 4466143 AAAGTTATTAg----tgttggtggctagttggat-gacatagtccag i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550436 46 + 5364348 AAAGTTATTAGTATTTATTGGTGGCTAGTtggat-gacctcgtccag i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6697503 40 - 9870158 --AGTTATTAG----Tggtggtggtcggtcggat-aacgtggccctg i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4269626 35 + 7922563 -----TATCAG----TTGTGGTGGTTACTTGGAT-AAC--AGCTCAG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33133527 43 - 38964690 aaagttattag----tacttgtggctagttggataaacataatccaa i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 811449 40 - 1116856 AAAGTTATTAG----TATTTGtgactagttgaat-aacat--ctcag i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9447926 323 - 31815103 I e mm10.chr5 124791807 30 + 151834684 I a score=328820.000000 s hg38.chr12_KI270834v1_alt 39633 22 + 119498 AGGGATGTTTGTAGTTGAAGGC s panTro5.chr12 127325987 22 + 137163284 agggatgtttgtagtcgaaggc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676819 22 + 135337776 agggatgtttgtagtcgaaggc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190206 22 - 8369578 agggatgtttgtagtcgaaggc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97837991 22 + 106955855 agggatgtttgtagttgaaggc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962841 22 + 133663169 AGGGATGTTTGTAGTCGAAGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128210213 22 + 137757926 AGGGATGTTTGTAGTCGAAGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10610112 22 - 16319837 agggatgtttgtagtcgaaggt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232876 22 + 20526591 agggatgtttgtagtcgaaggc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205802 22 + 128539186 agggatgtttgtagtcgaaggt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 525967 22 + 6255621 agggatgtttgtagtcgaaggc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4581141 22 - 8658521 agggatgtttgtagttgaaggc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786711 16 + 124281992 aggggtgtttgt------aggc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429502 22 - 9212255 agggatatttgtagtggaaggc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844803 22 + 4466143 agggatgtttgtagtggaaggc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550482 22 + 5364348 agggatgtttgtagtggaaggc i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6697543 22 - 9870158 agggatgtttgcagttgaaggc i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4269661 22 + 7922563 GGGGATATTTGTAATTGAAGGC i otoGar3.GL873618 C 0 I 2 s mm10.chr5 124791837 22 + 151834684 AGGGATGCCTGGAGGAGTGGGT i mm10.chr5 I 30 C 0 s canFam3.chr26 33133570 20 - 38964690 agggttgtttgtagttaaag-- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 811489 22 - 1116856 agggatgtttgtagttgaaagc i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9447926 323 - 31815103 I a score=12427.000000 s hg38.chr12_KI270834v1_alt 39655 2 + 119498 GA s panTro5.chr12 127326009 2 + 137163284 ga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676841 2 + 135337776 ga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190228 2 - 8369578 ga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97838013 2 + 106955855 ga i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962863 2 + 133663169 GA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128210235 2 + 137757926 GA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10610134 2 - 16319837 ga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232898 2 + 20526591 ga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205824 2 + 128539186 ga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 525989 2 + 6255621 ga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4581163 2 - 8658521 ga i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786727 2 + 124281992 ag i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429524 2 - 9212255 aa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844825 2 + 4466143 aa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550504 2 + 5364348 ag i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6697565 2 - 9870158 ca i proCoq1.NW_012154285v1 C 0 C 0 e micMur3.chr21 9447926 323 - 31815103 I e mm10.chr5 124791859 0 + 151834684 C e dasNov3.JH568189 811511 0 - 1116856 C e canFam3.chr26 33133590 0 - 38964690 C e otoGar3.GL873618 4269683 2 + 7922563 I a score=442917.000000 s hg38.chr12_KI270834v1_alt 39657 32 + 119498 TGACTTTGTCCTTGACCTGCC---CATGTCCCTGA s panTro5.chr12 127326011 32 + 137163284 tgaccttgtccttgacctgcc---catgtccctga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676843 32 + 135337776 tgaccttgtccttgacctgcc---catgtccctga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190230 32 - 8369578 tgaccttgtccttgacctgcc---catgtccctga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97838015 32 + 106955855 tgaccttgtccttgacctgcc---catgtccctca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962865 32 + 133663169 TGACCTTGTCCTTGACCTGCC---TATGTCCCTGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128210237 32 + 137757926 tgaccttgtccttgacctgcc---catgtccctga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10610136 32 - 16319837 tgaccttgtccttgacctgcc---catgtccctga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232900 32 + 20526591 tgaccttgtccttgacctgcc---tgtgtccctga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205826 32 + 128539186 tgaccttgtccttgacctgcc---tatgtccctga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 525991 32 + 6255621 tgaccttgtccttgacctgcc---tgtgtccctga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4581165 32 - 8658521 tgaccttgtccttgacctgcc---catgtccctga i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786729 32 + 124281992 tgaccttggccttgacctgcc---catgtccttga i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429526 32 - 9212255 tgaccttgtccttgacccgcc---cgtgtccttga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844827 32 + 4466143 tgaccttgtccttgacctgcc---cgtgtccttga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550506 32 + 5364348 tgaccttgtccttgacctgcc---cgtgtccttga i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6697567 32 - 9870158 tgaccttgccctccacctgcc---cacgtccttga i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4269685 32 + 7922563 TGACCCTGTCTTTGACCTGCC---AATGTCCTTGA i otoGar3.GL873618 I 2 C 0 s mm10.chr5 124791859 33 + 151834684 --ACCTTGCCCTCCACCTGTTGTGTGTGTCCCTGA i mm10.chr5 C 0 C 0 s canFam3.chr26 33133590 12 - 38964690 --------------------c---catgaccttga i canFam3.chr26 C 0 I 63 s dasNov3.JH568189 811511 11 - 1116856 ------------------------catgaccttga i dasNov3.JH568189 C 0 I 55 e micMur3.chr21 9447926 323 - 31815103 I a score=78732.000000 s hg38.chr12_KI270834v1_alt 39689 5 + 119498 GCACA s panTro5.chr12 127326043 5 + 137163284 gcaca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676875 5 + 135337776 gcaca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190262 5 - 8369578 gccca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97838047 5 + 106955855 gcaca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962897 5 + 133663169 GCACA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128210269 5 + 137757926 GCACA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10610168 5 - 16319837 gcaca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232932 5 + 20526591 gcaca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205858 5 + 128539186 gcaca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 526023 5 + 6255621 gcaca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4581197 5 - 8658521 gcaca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786761 5 + 124281992 gcaca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429558 5 - 9212255 gcaca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844859 5 + 4466143 gcaca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550538 5 + 5364348 gcaca i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6697599 5 - 9870158 gcaca i proCoq1.NW_012154285v1 C 0 I 220 s otoGar3.GL873618 4269717 5 + 7922563 GCACA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124791892 5 + 151834684 GCACA i mm10.chr5 C 0 I 370 e micMur3.chr21 9447926 323 - 31815103 I e dasNov3.JH568189 811522 55 - 1116856 I e canFam3.chr26 33133602 63 - 38964690 I a score=24752.000000 s hg38.chr12_KI270834v1_alt 39694 2 + 119498 AA s panTro5.chr12 127326048 2 + 137163284 aa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676880 2 + 135337776 aa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190267 2 - 8369578 aa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97838052 2 + 106955855 aa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962902 2 + 133663169 AA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128210274 2 + 137757926 AA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10610173 2 - 16319837 aa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232937 2 + 20526591 aa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205863 2 + 128539186 aa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 526028 2 + 6255621 aa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4581202 2 - 8658521 aa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786766 2 + 124281992 aa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429563 2 - 9212255 aa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844864 2 + 4466143 aa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550543 2 + 5364348 aa i aotNan1.NW_018491581v1 C 0 I 7 s otoGar3.GL873618 4269722 2 + 7922563 AA i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9447926 323 - 31815103 I e mm10.chr5 124791897 370 + 151834684 I e proCoq1.NW_012154285v1 6697604 220 - 9870158 I e dasNov3.JH568189 811522 55 - 1116856 I e canFam3.chr26 33133602 63 - 38964690 I a score=184845.000000 s hg38.chr12_KI270834v1_alt 39696 18 + 119498 ATAAGTGAAAACATGGCA s panTro5.chr12 127326050 18 + 137163284 ttaagtgaaaacatggca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676882 18 + 135337776 ttaagtgaaaacatggca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190269 18 - 8369578 ttaagtgaaaacatggca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97838054 18 + 106955855 ttaagtgaaaacatggca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123962904 18 + 133663169 TTAAGTGAAAACATGGCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128210276 18 + 137757926 TTAAGTGAAAACATGGCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10610175 18 - 16319837 ttaagtgaaaacatggca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12232939 18 + 20526591 ttaagtgaaaacatggca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205865 18 + 128539186 ttaagtgacaacatggca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 526030 18 + 6255621 ttaagtgaaaacatggca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4581204 18 - 8658521 ttaagcgaaaacatggca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786768 18 + 124281992 ttaagtgaaaacatggca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429565 18 - 9212255 ttaagtgaaaacatggca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844866 18 + 4466143 ttaagtgaaaacaaggca i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4269724 18 + 7922563 TGGAATGAAAACATGGCA i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9447926 323 - 31815103 I e mm10.chr5 124791897 370 + 151834684 I e proCoq1.NW_012154285v1 6697604 220 - 9870158 I e dasNov3.JH568189 811522 55 - 1116856 I e canFam3.chr26 33133602 63 - 38964690 I e aotNan1.NW_018491581v1 1550545 7 + 5364348 I a score=4127.000000 s hg38.chr12_KI270834v1_alt 39714 13 + 119498 GACACACtttttt s nomLeu3.chr10 97838072 13 + 106955855 gacatacttattt i nomLeu3.chr10 C 0 I 400 s rheMac8.chr11 123962922 13 + 133663169 GACACACtttttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128210294 13 + 137757926 AAGACACtttttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10610193 7 - 16319837 aacacac------ i macNem1.NW_012010578v1 C 0 C 0 s colAng1.NW_012116043v1 4581222 7 - 8658521 gacacag------ i colAng1.NW_012116043v1 C 0 C 0 e micMur3.chr21 9447926 323 - 31815103 I e mm10.chr5 124791897 370 + 151834684 I e proCoq1.NW_012154285v1 6697604 220 - 9870158 I e dasNov3.JH568189 811522 55 - 1116856 I e canFam3.chr26 33133602 63 - 38964690 I e otoGar3.GL873618 4269742 0 + 7922563 C e aotNan1.NW_018491581v1 1550545 7 + 5364348 I e cebCap1.NW_016107484v1 2844884 0 + 4466143 C e saiBol1.JH378194 429583 0 - 9212255 C e calJac3.chr9 114786786 0 + 124281992 C e manLeu1.NW_012103587v1 526048 0 + 6255621 C e chlSab2.chr11 119205883 0 + 128539186 C e cerAty1.NW_012001186v1 12232957 0 + 20526591 C e gorGor5.CYUI01015152v1 8190287 0 - 8369578 C e panPan2.chr12 125676900 0 + 135337776 C e panTro5.chr12 127326068 0 + 137163284 C a score=233518.000000 s hg38.chr12_KI270834v1_alt 39727 298 + 119498 tttttttttttttttttttttttttggagacggagtctcgctctgtcacccag-gctggagtgcagtggcgcaatctcggctcactgcaagctccgcctcccaggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgaccggctaattttttgta-tttttagtagaggcggggtttcaccgtgttagccaggatggtctcgatctcttgagctcgtgatctgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccg s rheMac8.chr11 123962935 291 + 133663169 tttttttttttttttttttttttt--gagacggagtctcgctctgtcgcccag-gctggagtgcagtggctggatctcagctcactgcaagctccacctcccgggtttacgccattctcctgcctcagcctcccgcgtagctgggactatggg------ccagctcgcccggctagttttttgtattttttagtagagacggggtttcaccgtgttagccaggatagtctcgatctcctgacctcgtgatctgcccatctcggcctcccaaagtgctgggattataggcttgagccaccg i rheMac8.chr11 C 0 I 17 s macFas5.chr11 128210307 291 + 137757926 tttttttttttttttttttttttt--gagacggagtctcgctctgtcgcccag-gctggagtgcagtggccggatctcagctcgctgcaagctccacctcccgggtttacgccattctcctgcctcagcctcccgagtagctgggactacggg------ccagctcgcccggctagttttttgtattttttagtagagacggggtttcaccgtgttagctaggatggtcttgatctcctgacctcgtgatccgcccgtctcggcctcccaaagtgctgggattacaggcttgagccactg i macFas5.chr11 C 0 I 6 s macNem1.NW_012010578v1 10610200 281 - 16319837 ----------tttttttttttttt--gagacggagtctcgctctgctccccagcgctggagtgcagtggccggatctcagctcgctgcaagctccacctcccgggtttacgtcattctcctgcctcagcctcccgagtagctgggactacggg------ccagctcgcccggctag-tttttgtattttttagtagagacggggtttcaccgtgttagccaggatggtcttgatctcctgacctcgtgatccgcccgtctcggcctcccaaagtgctgggattacaggcttgagccaccg i macNem1.NW_012010578v1 C 0 I 17 s colAng1.NW_012116043v1 4581229 295 - 8658521 --ttttttttgttgttgttgtttt--gagacggagtctcgctctgttgcccag-gctggagtgcagtggccagatctcagctcactgcaagctccgcctcccgagtttacgccattctcctgcctcagcctcctgagtagctgggactacaggcactctccacctcgcccggctagttttttgtattttttagtagagacggggtttcactgtgttagccaggatggtctcgatctcctgacctcgtgatccacccgtctcggcctcccaaagtgctgggattacaggcttgagccaccg i colAng1.NW_012116043v1 C 0 I 14 e micMur3.chr21 9447926 323 - 31815103 I e mm10.chr5 124791897 370 + 151834684 I e proCoq1.NW_012154285v1 6697604 220 - 9870158 I e dasNov3.JH568189 811522 55 - 1116856 I e canFam3.chr26 33133602 63 - 38964690 I e otoGar3.GL873618 4269742 0 + 7922563 C e aotNan1.NW_018491581v1 1550545 7 + 5364348 I e cebCap1.NW_016107484v1 2844884 0 + 4466143 C e saiBol1.JH378194 429583 0 - 9212255 C e calJac3.chr9 114786786 0 + 124281992 C e manLeu1.NW_012103587v1 526048 0 + 6255621 C e chlSab2.chr11 119205883 0 + 128539186 C e cerAty1.NW_012001186v1 12232957 0 + 20526591 C e nomLeu3.chr10 97838085 400 + 106955855 I e gorGor5.CYUI01015152v1 8190287 0 - 8369578 C e panPan2.chr12 125676900 0 + 135337776 C e panTro5.chr12 127326068 0 + 137163284 C a score=146.000000 s hg38.chr12_KI270834v1_alt 40025 5 + 119498 ACACA s macFas5.chr11 128210604 5 + 137757926 gccCA i macFas5.chr11 I 6 C 0 e micMur3.chr21 9447926 323 - 31815103 I e mm10.chr5 124791897 370 + 151834684 I e proCoq1.NW_012154285v1 6697604 220 - 9870158 I e dasNov3.JH568189 811522 55 - 1116856 I e canFam3.chr26 33133602 63 - 38964690 I e otoGar3.GL873618 4269742 0 + 7922563 C e aotNan1.NW_018491581v1 1550545 7 + 5364348 I e cebCap1.NW_016107484v1 2844884 0 + 4466143 C e saiBol1.JH378194 429583 0 - 9212255 C e calJac3.chr9 114786786 0 + 124281992 C e colAng1.NW_012116043v1 4581524 14 - 8658521 I e manLeu1.NW_012103587v1 526048 0 + 6255621 C e chlSab2.chr11 119205883 0 + 128539186 C e cerAty1.NW_012001186v1 12232957 0 + 20526591 C e macNem1.NW_012010578v1 10610481 17 - 16319837 I e rheMac8.chr11 123963226 17 + 133663169 I e nomLeu3.chr10 97838085 400 + 106955855 I e gorGor5.CYUI01015152v1 8190287 0 - 8369578 C e panPan2.chr12 125676900 0 + 135337776 C e panTro5.chr12 127326068 0 + 137163284 C a score=-913.000000 s hg38.chr12_KI270834v1_alt 40030 2 + 119498 CC- s macFas5.chr11 128210609 2 + 137757926 -TG i macFas5.chr11 C 0 C 0 s colAng1.NW_012116043v1 4581538 2 - 8658521 -ca i colAng1.NW_012116043v1 I 14 C 0 e micMur3.chr21 9447926 323 - 31815103 I e mm10.chr5 124791897 370 + 151834684 I e proCoq1.NW_012154285v1 6697604 220 - 9870158 I e dasNov3.JH568189 811522 55 - 1116856 I e canFam3.chr26 33133602 63 - 38964690 I e otoGar3.GL873618 4269742 0 + 7922563 C e aotNan1.NW_018491581v1 1550545 7 + 5364348 I e cebCap1.NW_016107484v1 2844884 0 + 4466143 C e saiBol1.JH378194 429583 0 - 9212255 C e calJac3.chr9 114786786 0 + 124281992 C e manLeu1.NW_012103587v1 526048 0 + 6255621 C e chlSab2.chr11 119205883 0 + 128539186 C e cerAty1.NW_012001186v1 12232957 0 + 20526591 C e macNem1.NW_012010578v1 10610481 17 - 16319837 I e rheMac8.chr11 123963226 17 + 133663169 I e nomLeu3.chr10 97838085 400 + 106955855 I e gorGor5.CYUI01015152v1 8190287 0 - 8369578 C e panPan2.chr12 125676900 0 + 135337776 C e panTro5.chr12 127326068 0 + 137163284 C a score=10500.000000 s hg38.chr12_KI270834v1_alt 40032 1 + 119498 G s panTro5.chr12 127326068 1 + 137163284 g i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676900 1 + 135337776 g i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190287 1 - 8369578 g i gorGor5.CYUI01015152v1 C 0 C 0 s macFas5.chr11 128210611 1 + 137757926 G i macFas5.chr11 C 0 I 3 s cerAty1.NW_012001186v1 12232957 1 + 20526591 g i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205883 1 + 128539186 g i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 526048 1 + 6255621 g i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4581540 1 - 8658521 g i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786786 1 + 124281992 g i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429583 1 - 9212255 g i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844884 1 + 4466143 g i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550552 1 + 5364348 g i aotNan1.NW_018491581v1 I 7 C 0 s otoGar3.GL873618 4269742 1 + 7922563 G i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 811577 1 - 1116856 g i dasNov3.JH568189 I 55 C 0 e micMur3.chr21 9447926 323 - 31815103 I e mm10.chr5 124791897 370 + 151834684 I e proCoq1.NW_012154285v1 6697604 220 - 9870158 I e canFam3.chr26 33133602 63 - 38964690 I e macNem1.NW_012010578v1 10610481 17 - 16319837 I e rheMac8.chr11 123963226 17 + 133663169 I e nomLeu3.chr10 97838085 400 + 106955855 I a score=1355723.000000 s hg38.chr12_KI270834v1_alt 40033 127 + 119498 ACACACTTATTTAAT-TTC-AGATAGTT-TATAGCCAGTGGGATAGGTAATGATTGGATTGGTTGGTCTAGACcagaggttgacaaactttttctgtagaggggt-agatagtaaatgtctgaggctttgt s panTro5.chr12 127326069 127 + 137163284 acacacttatttaat-ttc-agatagtt-tatagccagtgggataggtaatgattggatTGGTTGGTCTAGACcagaggttgacaaactttttctgtagaggggt-agatagtaaatatctgaggctttgt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125676901 127 + 135337776 acacacttacttaat-ttc-agatagtt-tatagccagtgggataggtaatgattggatTGGTTGGTCTAGACcagaggttgacaaactttttctgtagaggggt-agatagtaaatatctgaggctttgt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190288 127 - 8369578 acacacttatttaat-ttc-agatagtt-tatagccagtgggataggtaatgattggatTGGTTGGTCCAGACcagaggttgacaaactttttctgtagaggggt-agatagtaaatatctgaggctttgt i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123963243 127 + 133663169 ACACACTTATTTGAT-TTC-AGATAATT-TATAGCCAGTGGGATAGGTAATGATTGGATTGGTTGGTCTAGACcagaggttgacaaactttttctgtaaaggggt-agatagtaaatatttgagactttgt i rheMac8.chr11 I 17 C 0 s macFas5.chr11 128210615 127 + 137757926 ACACACTTATTTGAT-TTC-AGATAATT-TATAGCCAGTGGGATAGGTAATGATTGGATTGGTTGGTCTAGACTagaggttgacaaactttttctgtaaaggggt-agatagtaaatatttgagactttgt i macFas5.chr11 I 3 C 0 s macNem1.NW_012010578v1 10610498 127 - 16319837 acacacttatttgat-ttc-agataatt-tatagccagtgggataggtaatgattggatTGGTTGGTCTAGACcagaggttgacaaactttttctgtaaaggggt-agatagtaaatatttgagactttgt i macNem1.NW_012010578v1 I 17 C 0 s cerAty1.NW_012001186v1 12232958 127 + 20526591 acacacttatttggt-ttc-agataatt-tatagccagtgggataggtaatgattggatTGGTTGGTCTAGACcagaggttgacaaactttttctgtaaaggagt-agatagtaaatatttgagactttgt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119205884 127 + 128539186 acacacttatttgat-ttc-agataatt-tatagccagtgggataggtgatgattggatTGGTTGGTCTAGACcagaggttgacaaactttttctgtaaaggggt-agatagtaaatatttgagactttgt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 526049 127 + 6255621 acacacttatttggt-ttc-agataatt-tatagccagtgggataggtaatgattggatTGGTTGGTCTAGACcagaggttgacaaactttttctgtaaaggggt-agatagtaaatatttgagactttgt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4581541 127 - 8658521 tcacacttatttgat-ttc-agataatt-tatagccagtgggataggtaatgattggatTGGTTGGTCTAGACcagaggttgacaaactttttctgtaaaggggt-agatagtaaatatttgagactttgt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786787 125 + 124281992 acacacttattagat-tcc-agatagtt-tatagccagtgtgatagg---tgactggatTGGCTAGTCGAGACcagaggttgacacattttttctgtaaagggggaagatagtaaatatttgaggctttga i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429584 127 - 9212255 acacacttactagat-tcc-agataatt-tatagccagtgggataggtaatGATTGGACTGGCTGGTTTAGACcagaggttgacacactttttctgtaaaggggt-agatagtaaatatctgaggctttga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2844885 125 + 4466143 acacacttattagat-tcc-agataatt-tatagccagcgggataggtaatGATTGGACTCTCTGGTCTAGACcagaggttgacgc--cttttctgtaaaggggt-agatagtaaatatttgaggctttga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550553 127 + 5364348 acacacttattagat-ttc-agataatt-tatagccagtgggatagataaagattggaCTGGCTGGTCTAGACcaaaggttgacacactttttctgtaaaggggt-agagagtaaatatttcaggctttga i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4269743 120 + 7922563 ACACACTTATGAGAC-TTC-AAATAGTT-CATAGCCAGTGGGATGAGCAATGATT----TCAATGGTCTGAACcagaggctgataacctttttct---aaggggt-ggatagtaaatattttaggctttgt i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33133665 116 - 38964690 acacatttgctagat-ttctagaaaattccataactcgtaggataggtaatGATT----TCGATAGTTTAGATCAGa---------atttcttctgtaaagagat-agagagtaaacattttaagctttgt i canFam3.chr26 I 63 C 0 s dasNov3.JH568189 811578 112 - 1116856 atgtatttatcagatatcc-agataaat-catagctggtgggataggtaataATT----TTGTTAGTCTAg------------taaacttcatctgtaaaggagc-aaatggtaaatagtttaggctttgt i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9447926 323 - 31815103 I e mm10.chr5 124791897 370 + 151834684 I e proCoq1.NW_012154285v1 6697604 220 - 9870158 I e nomLeu3.chr10 97838085 400 + 106955855 I a score=821874.000000 s hg38.chr12_KI270834v1_alt 40160 72 + 119498 gtgggcaatatgatttctttc-acagctactcaactctgctgttgtggcatgaaaacagccaga---aatttgtat s panTro5.chr12 127326196 72 + 137163284 gtgggcaatatgatttctttc-atagctactcaactctgctgttgtggcatgaaaacagccaga---aatttgtat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125677028 72 + 135337776 gtgggcaatatgatttctttc-acagctactcaactctgctgttgtggcatgaaaacagccaga---aatttgtat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190415 72 - 8369578 gtgggcaatgtgatttctttc-acagctactcaactctgctgttgtggcatgaaaacagccaga---actttgtat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97838485 72 + 106955855 gtgggcaatatgatttctttc-acagctactcaactctgctgttgtggtgtgaaaacagccaga---agtttgtac i nomLeu3.chr10 I 400 C 0 s rheMac8.chr11 123963370 72 + 133663169 gtgggcaatatgatttctttc-acaactactcaactctgctgttgtggcatgaaaacagccaga---aatttgtac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128210742 72 + 137757926 gtgggcaatatgatttctttc-acaactactcaactctgctgttgtggcatgaagacagccaga---aatttgtac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10610625 72 - 16319837 gtgggcaatatgatttctttc-acaactactcaactctgctgttgtggcatgaagacagccaga---aatttgtac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12233085 69 + 20526591 gtgggcaatatgatttctttc----actactcaactctgctgttgtggcatgaaaacagccaga---aatttgtac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119206011 69 + 128539186 gtgggcaatatgatttctttc----actactcaactctgctgttgtggcatgaaaacagccaga---aatttgtac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 526176 69 + 6255621 gtgggcaatatgatttctttc----actactcaactctgctgttgtggcatgaaaacagccaga---aatttgtac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4581668 72 - 8658521 gtgggcaatatgatttctttc-acaactactcaactctgctgttgtggcatgaaaacagccaga---aatttgtac i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786912 72 + 124281992 gtgagccatgcgatttctttt-acaactgctcaactctgctgttgtggcatgagagcagccaga---aatttgtac i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429711 72 - 9212255 gtgagccatgctatttctttt-acaactgcccaactctgctgttgtggcgtgaaagcagccaga---aatttgtac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2845010 72 + 4466143 gtgagccatgcgatttctttt-acaactgctcaactctgctgttgtggcgtgaaagcagccaga---aatttgtac i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550680 72 + 5364348 gtgagccatgcgatttctttt-acaactgctcaactctgctgttgtggcatgaaagcagccaga---aatttgtat i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4269863 74 + 7922563 --gggccataggctttctttttgcaactgttcaattctgttattgtgatgtgaaagcagctagagacagtatatgc i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33133781 65 - 38964690 --gggccatatggtttctttt-gtaactactcaactatgccattgtggcagtaaagcagcc------actgtat-- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 811690 69 - 1116856 --aggccacatgatttctttt-gcagctgatacttttggccattgtaacatgaaagcaaccatagagaatat---- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9447926 323 - 31815103 I e mm10.chr5 124791897 370 + 151834684 I e proCoq1.NW_012154285v1 6697604 220 - 9870158 I a score=855037.000000 s hg38.chr12_KI270834v1_alt 40232 60 + 119498 acaaat--gggcatggctgtgtaccaataaacctttatttaca--aaaca-----gatgacaggccag-------a--------------- s panTro5.chr12 127326268 60 + 137163284 acaaat--gggcatggctgtgtaccaataaacctttatttaca--gaaca-----gatgacaggccag-------a--------------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125677100 60 + 135337776 acaaat--gggcatggctgtgtaccaataaacctttatttaca--gaaca-----gatgacaggccag-------a--------------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190487 59 - 8369578 acaaat--ggtcatggctgtgtaccaataaacctttattta-a--aaaca-----gacgacaggccag-------a--------------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97838557 63 + 106955855 acaaatgggggcatggctgtgtaccaataaacctttatttaca--aaaca-----gatgacaggccaga------A--------------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123963442 61 + 133663169 acgaat--gggcatggctgtgtaccaataaacctttatttaca--aaaca-----gatgacaggccaga------A--------------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128210814 61 + 137757926 acgaat--gggcatggctgtgtaccaataaacctttatttaca--aaaca-----gatgacaggccaga------A--------------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10610697 61 - 16319837 acgaat--gggcatggctgtgtaccaataaacctttatttaca--aaaca-----gatgacaggccaga------A--------------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12233154 61 + 20526591 acgaat--gggcatggctgtgtaccaataaacctttatttaca--aaaca-----gatgacaggccaga------A--------------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119206080 61 + 128539186 acgaat--gggcatggctgtgtaccaataaatctttatttaca--aaaca-----gatgacaggccaga------A--------------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 526245 61 + 6255621 acgaat--gggcatggctgtgtaccaataaacctttatttaca--aaaca-----gatgacaggccaga------A--------------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4581740 61 - 8658521 acgaat--gggcatggctgtataccaataaacctttatttaca--aaaca-----gatgactggccaga------A--------------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114786984 61 + 124281992 acaaat--gggcatggctgtgtaccaatgaaactttatttaca--aaaca-----ggtgacaggccaga------A--------------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429783 61 - 9212255 acaaat--gggcatggccgtgtaccaataaaactttatttaca--aaaca-----ggtgacaggccaga------A--------------- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2845082 61 + 4466143 acaaac--gggcatggctgtgtaccaataacactttatttaca--aaaca-----ggtgacaggccaga------A--------------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550752 61 + 5364348 acaaat--gggcatggctgtgtaccaataaaactttattaaca--aaaca-----ggtgacaggccaga------A--------------- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9448249 62 - 31815103 acaaag--ggacatggctgtgtaccaataaaactttatttaca-aaaata-----ggtggcgggccaga------A--------------- i micMur3.chr21 I 323 C 0 s proCoq1.NW_012154285v1 6697824 62 - 9870158 acaaat--gggcatggctgtgtaccaataaaactttatttaca-caagca-----ggcggcaggccaga------A--------------- i proCoq1.NW_012154285v1 I 220 C 0 s otoGar3.GL873618 4269937 68 + 7922563 acaaat--ggggatggctgtttaccagtaaaactttatttgca-aaaatg-----ggtagcagaccagaGTGCATA--------------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33133846 65 - 38964690 gtgatt--ggacatatctatgtaccaataaaactttaccaaaa--aaaaaaatctggtgatgggtcaga---------------------- i canFam3.chr26 C 0 I 192 s dasNov3.JH568189 811759 77 - 1116856 ataaat--gaa-atgactgtgtaccaataaagctttattaacaaaaaaca-----catggaaggccatc------tttggcccatggctta i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124791897 370 + 151834684 I a score=-1339.000000 s hg38.chr12_KI270834v1_alt 40292 1 + 119498 -G s panTro5.chr12 127326328 1 + 137163284 -G i panTro5.chr12 C 0 C 0 s panPan2.chr12 125677160 1 + 135337776 -G i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190546 1 - 8369578 -G i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97838620 1 + 106955855 -A i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123963503 1 + 133663169 -G i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128210875 1 + 137757926 -G i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10610758 1 - 16319837 -G i macNem1.NW_012010578v1 C 0 C 0 s colAng1.NW_012116043v1 4581801 1 - 8658521 -G i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114787045 1 + 124281992 -G i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429844 1 - 9212255 -A i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2845143 1 + 4466143 -G i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550813 1 + 5364348 -G i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9448311 1 - 31815103 -G i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6697886 1 - 9870158 -G i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4270005 1 + 7922563 -T i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33134103 1 - 38964690 -g i canFam3.chr26 I 192 C 0 s dasNov3.JH568189 811836 1 - 1116856 c- i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124791897 370 + 151834684 I e manLeu1.NW_012103587v1 526306 0 + 6255621 C e chlSab2.chr11 119206141 0 + 128539186 C e cerAty1.NW_012001186v1 12233215 0 + 20526591 C a score=2670576.000000 s hg38.chr12_KI270834v1_alt 40293 184 + 119498 TGTGTG--------TTGTCTTAAC-AAA-------------AGGCT--TCTGTGAAAAGTGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATGT------GACAGT------------------CACGTGCGGG-TTGTGGC-TCAACCACACCTAGGACGCTACGACCACCTTCTCAAAGGAACAC---AGGTGTTCTGGGTGTGTCTCTAGTAGGGCTACTAGGTTGGAGGTGAA-TGG-AAACCAGGACATAATTA s panTro5.chr12 127326329 184 + 137163284 TGTGTG--------TTGTCTTAAC-AAA-------------AGGCT--TCTGTGAAAAGTGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATGT------GACAGT------------------CACGTGCGGG-TTGTGGC-TCAACCACACCTAGGACGCTACGACCACCTTCTCAAAGGAACAC---AGGTGTTCTGGGTGTGTCTCTAGGAGGGCTACTAGGTTGGAGGTGAA-TGG-AAACCAGGACATAATTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125677161 184 + 135337776 TGTGTG--------TTGTCTTAAC-AAA-------------AGGCT--TCTGTGAAAAGTGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATGT------GACAGT------------------CACGTGCGGG-TTGTGGC-TCAATCACACCTAGGACGCTACGAccaccttctcaaaggaacac---aggtgttctgggtgtgtctctaggagggctactaggttggaggtgaa-tgg-aaaccaggacataatta i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190547 183 - 8369578 TGTGTG--------TTGTCTTAAC-AAA-------------AGGCT--TCTGTGAAAAGTGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATGT------GACAGT------------------CATGTGCGGG-TTGTGGC-TCAACCACACCTAGGACGCTACGACCACCTTCTC-AAGGAACAC---AGGTGTTCTGGGTGTGTCTCTAGGAGGGCTACTAGGTTGGAGGTGAA-TGG-AAACCAGGACATAATTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97838621 184 + 106955855 TGTGTG--------TTGTCTTTAC-AAA-------------AGACT--TCTGTGAAAAGTGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATGT------GACAGT------------------CATGTGCGGG-TTGTGGC-TCAACCACACCTAGGACGCTATGACCACCTTCTCAAAGGAACAC---AGGTGGTCCGGGTGTGTCTCTAGGAGGGCTACTAGGTTGGAGGTGAA-TGG-AAACCAGGACATAATTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123963504 184 + 133663169 TGTGTG--------TTGTCTTAAC-AAA-------------AGGCT--TCTGTGAAAAGTGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATGT------GACAGT------------------CATGTTCGGG-TTGTGGC-TCAACCACACCTAGGACACTATGAccaccttctcaaaggaacac---aggttgtctgggtgtgtctctaggagggctactaggttggaggtgaa-tgg-aaaccaggacataatta i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128210876 184 + 137757926 TGTGTG--------TTGTCTTAAC-AAA-------------AGGCT--TCTGTGAAAAGTGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATGT------GACAGT------------------CATGTTCGGG-TTGTGGC-TCAACCACACCTAGGACACTATGAccaccttctcaaaggaacac---aggtggtctgggtgtgtctctaggagggctactaggttggaggtgaa-tgg-aaaccaggacataatta i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10610759 184 - 16319837 TGTGTG--------TTGTCTTAAC-AAA-------------AGGCT--TCTGTGAAAAGTGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATGT------GACAGT------------------CATGTTCGGG-TTGTGGC-TCAACCACACCTAGGACACTATGAccaccttctcaaaggaacac---aggtggtctgggtgtgtctctaggagggctactaggttggaggtgaa-tgg-aaaccaggacataatta i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12233215 183 + 20526591 -ATGTG--------TTGTCTTAAC-AAA-------------AGGCT--TCTGTGAAAAGTGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATGT------GACAGT------------------CATGTTCGGG-TTGTGGC-TCAACCACACCTAGGACACTATGAccaccttctcaaaggaacac---aggtggtctgggtgtgtctctaggagggctactaggttggaggtgaa-tgg-aaaccaggacataatta i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119206141 183 + 128539186 -ATGTG--------TTGTCTTAAC-AAA-------------AGGCT--TCTGTGAAAAGTGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATGT------GACAGT------------------CATGTTCGGG-TTGTGGC-TCAACCACACCTAGGACACTATGAccaccttctcaaaggaacac---aggtggtctgggtgtatctctaggagggctactaggttggaggtgaa-tgg-aaaccaggacataatta i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 526306 183 + 6255621 -ATGTG--------TTGTCTTAAC-AAA-------------AGGCT--TCTGTGAAAAGTGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATGT------GACACT------------------CATGTTCGGG-TTGTGGC-TCAACCACACCTAGGACACTATGAccaccttctcaaaggaacac---aggtggtctgggtgtgtctctaggagggctactaggttggaggtgaa-tgg-aaaccaggacataatta i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4581802 184 - 8658521 TGTGTG--------TTGTCTTAAC-AAA-------------AGGCT--TCTGTGAAAAGTGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATGT------GACAGT------------------CATGTTCGGG-TTGtggt-tcaaccacacctaggatgctatgaccaccctctcaaaggaacat---gggtggtctgggtgtgtctctaggagggctactaggttggaggtgaa-tgg-aaaccaggacataacta i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114787046 183 + 124281992 TGTGTG--------TTGTCTTAAC-AAA-------------AGGCC--TCTGTGAAAAGTGC----------------------------------------------------------------------------------------------------------------------------AGATGGATAT------GACAGT------------------CATATGTGGG-TTACGGC-TCTaccacacctgggacactacggccacattctcaaaggaacac---aggtggcctgggtatgtctctagaaaggctaccaggctggaggtgaa-tggaaaaccaggacataACTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 429845 185 - 9212255 TGTGTG--------TTGTCTTAAC-AAA-------------AGGCT--TCTGTGAAAAGTGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATAT------GACAGT------------------CATATGTGGG-TTGTGGC-TCTACCACACCTGGGACGCTATGAccacattctcaaaggaacac---aggtggcctgggtgtgtctctagaaaggctaccaggctggaggtgaa-tggaaaaccaggacataatta i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2845144 185 + 4466143 TGTGTG--------TTGTCTTAAC-AAA-------------AGGCT--TCTGTGAAAAGTGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATAT------TACAGT------------------CATATGTGGG-TTGTGGC-TCTACCACACCTGGGACACTATGACCACAGTCTCAAAGGAACAC---AAGTGGCCTGGGTGTGTCTCTAGAAAGGCTGCCAGGCTGGAGGTGAA-TGGAAAACCAGGACATAATTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550814 183 + 5364348 TGTGTG--------TTGTCTTAAC-AAA-------------AGGCT--TCTGTGAAAAGCGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATAT------GACAGT------------------C--ATGTGGG-TTGTGGC-TCTGCCACACCTGGGACACTGTAAccacattctcaaaggaacac---aggtggcctgggtgtgtctctagaaaggctaccaggctggaggtgaa-tggaaaaccaggacataatta i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9448312 178 - 31815103 TGTG--------------CTTAAC-ATA-------------AGGCT--TCTTTGAAAGGAGC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATGT------GACAGT------------------CATGTGTGGG-CTGGGGC-TCAATTACACCCAGGACACCATGAccatattcccaaagtgacac---aggtggtctgggtgtgtctcgagaagggctgccaggctgg-ggtgaactgg-aagccaggacataatta i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6697887 179 - 9870158 TGTG--------------CTTAAC-ACA-------------GGGCC--TCTTTGAAAGGAGC--------------------------------------------------------------------------------------------------------------------------AGAGACGGATGT------GACAGT------------------CATGTGTGGG-CGGTGGC-TCGATCACGCCCAGGACACCATGAccacattctcaaagtgacac---agatggtctgggtgtgtctctagaagggctgccaggctggaggtgacctgg-aaaccaggacgtaatta i proCoq1.NW_012154285v1 C 0 I 428 s otoGar3.GL873618 4270006 181 + 7922563 TGT---------------CTTAAC-AAA-------------ATTGT--TCTTTGAAAGGAAC--------------------------------------------------------------------------------------------------------------------------AGAGATGGATAT------TTTAGT------------------TGTGGACAGG-TTGTGGT-TTGACCACACCCAGGATACCATGACCATATTCTCAAAGGGACACAGAAGATGGTCTGGGTGTATCTCTAGAAGGGCTGCTAAGCTGGAGATTAATTAG-GATCCAGGACATAATTA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124792267 172 + 151834684 tgtgtc--------ccATCTTAAC-AGT-------------AGGAT--TC-ATGGGAAGT------------------------------------------------------------------------------------------------------------------------------TGATGTACAC------AGTGGT------------------CACGTGTGCC-TTGTGGCTTTAATCACATCCAATACCCTGTGACCTCGATT--------GCAC---GGGTGGCCCGGATGACTTTCTCGAAGGGCCCCTTGACTGGCATGAAT-TGG-AAACCAGAACATAAGTA i mm10.chr5 I 370 C 0 s canFam3.chr26 33134104 186 - 38964690 tatgta--------ttgtcataacaaaa-------------aggct--tcattaaaaagtgc--------------------------------------------------------------------------------------------------------------------------agagataggtat------gatagt------------------catgtgaaag-ctgtggc-ttgaccacacccaggataccatgaccacattctcaaagtgacac---aagtggtttgggcgtatcaccagaaggaccacgaggctgatggtaaattgg-aaattgggacataatta i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 811837 352 - 1116856 tgtttgccaacccctgGTCCAGAC-AAACCCAGCTACTGAGAGACTTGTCTCTAGAAGGTGCCCAGTGTCTGAACTTTCACTTCACTGGATGAAGGCAGTACATAATGGACACAACTTACCAGGTAACTGAGGTCCTGTAGTTTCAGTTGGCCTGAAACCATGTGACACGCCATATGGTTGCTCAGAAATGTGTATTGTCTCGACAGTAGTCTTTATTGACTGTGCCCTGTGCAGGATGGTGAC-CTGACCAC--CCAGGTCATCCTGCCTGCATTCTCAAAGGGGCAC---AGTTGGCCTAGGTGTATCCCTAGGAGGGCCATTAGGCTGGTGGGGAA-TTG-GAACCAGGACATAATTA i dasNov3.JH568189 C 0 C 0 a score=16670.000000 s hg38.chr12_KI270834v1_alt 40477 1 + 119498 T s panTro5.chr12 127326513 1 + 137163284 T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125677345 1 + 135337776 t i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190730 1 - 8369578 T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97838805 1 + 106955855 T i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123963688 1 + 133663169 t i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128211060 1 + 137757926 t i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10610943 1 - 16319837 t i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12233398 1 + 20526591 t i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119206324 1 + 128539186 t i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 526489 1 + 6255621 t i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4581986 1 - 8658521 t i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114787229 1 + 124281992 T i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 430030 1 - 9212255 t i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2845329 1 + 4466143 T i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550997 1 + 5364348 t i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9448490 1 - 31815103 t i micMur3.chr21 C 0 I 818 s otoGar3.GL873618 4270187 1 + 7922563 T i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124792439 1 + 151834684 T i mm10.chr5 C 0 C 0 s canFam3.chr26 33134290 1 - 38964690 t i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 812189 1 - 1116856 C i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6698066 428 - 9870158 I a score=757096.000000 s hg38.chr12_KI270834v1_alt 40478 71 + 119498 GCCAGAAAAGAGCAGAACAAAGGAAGAACAAAGGAAGCATGACAGAACCATCTGAGGCACTGTCCTGTGGG s panTro5.chr12 127326514 71 + 137163284 GCCAGAAAAGAGCAGAACAAAGGAAGAACAAAGGAAGCATGACAGAACCATCTGAGGCACTGTCCTGTGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125677346 71 + 135337776 gccagaaaagagcagaacaaaggaagaacaaaggaagcatgacagaaccatctgaggcactgtcctgtggg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190731 71 - 8369578 GCCAGAAAAGAGCAGAACAAAGGAAGAACAAAGGAAGCATGACAGAACCATCTGAGGCACTGTCCTGTGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97838806 71 + 106955855 GCCAGAAAAGAGCAGAACAAAGGAAGAACAAAGAAAGCATGATAGAACCATTTGAGGCAATGTCCTGTGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123963689 60 + 133663169 gccagagaagagcagaacaaagg-----------aagcatgatagaaccatttgaggcactgtcctgtggg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128211061 60 + 137757926 gccagagaagagcagaacaaagg-----------aagcatgatagaaccatttgaggcactgtcctgtggg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10610944 60 - 16319837 gccagagaagagcagaacaaagg-----------aagcatgatagaaccatttgaggcactgtcctgtggg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12233399 60 + 20526591 gccagagaagagcagaacaaagg-----------aagcatgatagaaccatttgaggcactgtcctgtggc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119206325 60 + 128539186 gccagagaagagcagaacaaagg-----------aagcatgatagaaccatttgaggcactgtcctgtggg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 526490 60 + 6255621 gccagagaagagcagaacaaagg-----------aagcatgatagaaccatttgaagcactgtcctgtggg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4581987 60 - 8658521 gccagagaagagcagaacaaagg-----------aagcatgatagaaccatttgaggcactgtcctgtggg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114787230 60 + 124281992 GCCAGAGAAGAGCAGAAGAAAGG-----------AAGCATGATAGAACCAGCTGAGGCCCTGTCCTATGGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 430031 60 - 9212255 gccggagaagagcagaagaaagg-----------aagcatgatagaaccatctgaggcactgtcctgtggg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2845330 60 + 4466143 GCCGGAGAAAAGCGGAAGAAAGG-----------AAGGATGATGGAACCATTTGAGGCACTGTCCTATGGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1550998 60 + 5364348 gccggagaagagcagaagaaagg-----------aagcatgatagaaccatctgaggcactgtcctatggg i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4270188 55 + 7922563 CCCAGAGAAGACC-----AAGAG-----------AAACATAATATGATCATTTGAGGCACTGTGATATGGG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124792440 60 + 151834684 CCCAGAGAAGAGATGGCCAGGGG-----------AAGCCTGCCAGGGCCATAGGAAGCAGTGTCCTGAAGG i mm10.chr5 C 0 I 1006 s canFam3.chr26 33134291 60 - 38964690 cccagagaagagaagaccaaggg-----------aaacatgatagGACCTTTGGAGCCATTGTTGTAAGAG i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 812190 59 - 1116856 CCCAGGGAAGAGAAGACCAAGGG-----------AAACATGATAG-ACTAGGCGTGGCACTGTCCTGTGCA i dasNov3.JH568189 C 0 I 2 e micMur3.chr21 9448491 818 - 31815103 I e proCoq1.NW_012154285v1 6698066 428 - 9870158 I a score=779644.000000 s hg38.chr12_KI270834v1_alt 40549 66 + 119498 AGACA--GCTGTCTCAGGACCCTTGCAATCCCTGGTGGTGAT-TGGTGCTTTGATAGGGA-G-GGGACCTT- s panTro5.chr12 127326585 66 + 137163284 AGACA--GCTGTCTCAGGACCCTTGCAATCCCTGGTGGTGAT-TGGTGCTTTGATAGGGA-G-GGGGCCTT- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125677417 66 + 135337776 agaCA--GCTGTCTCAGGACCCTTGCAATCCCTGGTGGTGAT-TGGTGCTTTGATAGGGA-G-GGGGCCTT- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190802 66 - 8369578 AGACA--GCTGTCTCAGGACCCTTGCAATCCCTGGTGGTGAT-TGGTGCTTTGATAGAGA-G-GGGGCCTT- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97838877 66 + 106955855 AGACA--GCTGTCTCAGGACCCGTGCAGTCCCTGGTGGTGAT-TGGTGCCTTGATAGGGA-G-GGAGCCTT- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123963749 66 + 133663169 agaCA--GCTGTCTCAGGACCCGTGCAATCCCTGGTGGTGAT-TGGTGCCTTGATAGGAA-G-GGGGCCTT- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128211121 66 + 137757926 agaCA--GCTGTCTCAGGACCCGTGCAATCCCTGGTGGTGAT-TGGTGCCTTGATAGGGA-G-GGGGCCTT- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10611004 66 - 16319837 agaCA--GCTGTCTCAGGACCCGTGCAATCCCTGGTGGTGAT-TGGTGCCTTGATAGGGA-G-GGGGCCTT- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12233459 66 + 20526591 agaCA--GCTGTCTCAGGACCCGTGCAATCCCTGGTGGTGAT-TGGTGCCTTGATAGGGA-G-GGGGCCTT- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119206385 66 + 128539186 agaCA--GCTGTCTCAGGACCCGTGCAATCCCTGGTGGTGAT-TGGTGCCTTGATAGGGA-G-GGGGCCTT- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 526550 66 + 6255621 agaCA--GCTGTCTCAGGACCCGTGCAATCCCTGGTGGTGAT-TGGCGCCTTGATAGGGA-G-GGGGCCTT- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4582047 66 - 8658521 agaCA--GCTGTCTCAGGACCCATGCAATCCCTGGTGGTGAT-TGGTGCCTTGATAGGGA-G-GGGGTCTT- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114787290 66 + 124281992 AGGCA--GCTGTCTCAGGACCCAGGCAGTCCCTGGTGGTGAT-TGGTGCCTTGATCGGGA-G-GGGACCTT- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 430091 66 - 9212255 agGCA--GCTGTCTTGGGACCCAGGCAATCCCTGTTGGTGAT-TGGTGCCTTGATTGGGA-G-GGGACCTT- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2845390 66 + 4466143 AGGCA--GCTGTCTCGGGACCCAGGCAGTCCCTGTTAGTGAT-TGGTGCCTTGATCGGGA-G-GGGGCCTT- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1551058 66 + 5364348 agGCA--GCTGTCTCGGGACCCAGGCAATCCCTGGTGGTGAT-TGGTGCCTTGATCTGGA-G-GGGGCCTT- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4270243 68 + 7922563 AGAGGGTGTTGTCTAAGGAGCCATGCAACCCCTGGTGGGTTC-CAATGCTTTGTAGGAAG-A-GGGGTCTt- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33134353 66 - 38964690 AGAGA--GCTGTCTAAGG-CCCACCCAATCTCTGGTGGTCCT-CAATGCCTTGATAGGGATA-GAGGCCTT- i canFam3.chr26 I 2 I 1 s dasNov3.JH568189 812251 56 - 1116856 AGGGA--GTTGT-------------GAATCCCTGCTTGTGTTCCAATGCCTTGATAGGGA-GAGGGGCCTTC i dasNov3.JH568189 I 2 C 0 e micMur3.chr21 9448491 818 - 31815103 I e mm10.chr5 124792500 1006 + 151834684 I e proCoq1.NW_012154285v1 6698066 428 - 9870158 I a score=3766457.000000 s hg38.chr12_KI270834v1_alt 40615 318 + 119498 CACTGCTTTACAGTCTTTTctggatgac----tgtggtc-----acttgaactc-taagatgatcagcctctttcctgtcaaatgggacctgttatcttccctttttcttccccaagggcatgg--tagactctgtggcagcgaaatgaaacacttcatgatgagatgaaa-gcatattgcagaggacaaatctctctgcaaatatagggcactattatcaGGATTTCCTCACCTGCCAAA--TGT-ATCATTCATCAGAAGATGTTGCTCAACCCTC-TTTGGGCAAGAAAAGCTTTCCACTAACTTCCATTTAAATAAACAAACCCTTGAAAT s panTro5.chr12 127326651 318 + 137163284 CACTGCTTTACAGTCTTTTCTGGATGAC----TGTGGTC-----ACTTGAACTC-TAAGATGATCAGCCTCTTTCCTGTCAAATGGGACCTGTTATCTTCCCTTTTTCTTCCCCAAGGGCATGG--TAGACTCTGTGGCAGCGAAATGAAATACCTCATGATGAGATGAAA-GCATATTGCAGAGGACAAATCTCTCTGCAAATATAGGGCACTATTATCAGGATTTCCTCACCTGCCAAA--TGT-ATCATTCATCAGAAGATGTTGCTCAACCCTC-TTTGGGCAAGAAAAGCTTTCCACTAACTTCCATTTAAATAAACAAACCCTTGAAAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125677483 319 + 135337776 CACTGCTTTACAGTCTTTTctggatgac----tgtggtc-----acttgaactcttaagatgatcagcctctttcctgtcaaatgggacctgttatcttccctttttcttccccaagggcatgg--tagactctgtggcagcgaaatgaaacacctcatgatgagatgaaa-gcatattgcagaggacaaatctctctgcaaatatagggcactattatcaGGATTTCCTCACCTGCCAAA--TGT-ATCATTCATCAGAAGATGTTGCTCAACCCTC-TTTGGGCAAGAAAAGCTTTCCACTAACTTCCATTTAAATAAACAAACCCTTGAAGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8190868 313 - 8369578 CGCTGCTTTACAGTCTTTTctggatgac----tgtggtc-----acttgaactg-taagatgatcagcctctttcctgtcaagtgggacctgttatctt-cctttttcttccccaagggcatgg--tagactctgtggcagcgaaatgaaacacttcataatgagatgaaa-gcatattgcaaagcacaaatctctctgcaaatatagggcactattatcaGGATTTCCTCACCTGCCAAA--TGT-ATCATTCATCAGAAGATGTTGCTCAACCCTC-TTTGGGCAAGAAAAGCTTTCCACTAACTTCCATTTAAAT----AAGCCCTTGAAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97838943 318 + 106955855 TGCTGCTTTACAGTCTTTTctggatgac----tgtggtc-----acttgaactc-taagatgatcagcctctttcctgtcaaatgggacctgttatcttccctttttcttccccaagggcattt--tagaccctgtggcagcgaaatggaacacttcatgatgaggtgaaa-gcatatcgcaaaggacaaatctctctgcaaatacagggcactattatcaGGGTTTCCTCACCTGCCAGA--TGT-ATCATTCATCAGAAGGTGTTGCTTAACCCTC-TTTGGGCAAGAAAAGCTTTCCACTAACTTCCTTTTAAATAAACGAACCGTTGAAAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123963815 318 + 133663169 CACTGCTTTACAGTCTTTgctggatgac----tgtggtc-----acttgaactc-taagatgatcagcctctttcctgtcaaatgggaactgttatcttcccttcttcctccccaagggcatgg--tagaccctgtggcagcgaaatgaaacacttcatgatgagatgaaa-gcatattgtaaaggacaaatctctctgctaatatagggcactattatcaGGGTTTCCTCACCTGCCAGA--TGT-ATCATTCATCAGAAGATGTTGCTCAATCCTC-TTTGGGCAAGAACAGCTTTCCACTAACTTCCATTTAAATAAACAAATCCTTGAAAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128211187 318 + 137757926 CACTGCTTTACAGTCTTTgctggatgac----tgtggtc-----acttgaactc-taagatgatcagcctctttcctgtcaaatgggaactgttatcttcccttcttcctccccaagggcatgg--tagaccctgtggcagcgaaatgaaacacttcatgatgagatgaaa-gcatattgtaaaggacaaatctctctgctaatatagggcactattatcaGGGTTTCCTCACCTGCCAGA--TGT-ATCATTCATCAGAAGATGTTGCTCAATCCTC-TTTGGGCAAGAACAGCTTTCCACTAACTTCCATTTAAATAAACGAACCCTTGAAAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10611070 318 - 16319837 CACTGCTTTACAGTCTTTgctggatgac----tgtggtc-----acttgaactc-taagatgatcagcctctttcctgtcaaatgggaactgttatcttcccttcttcctccccaagggcatgg--tagaccctgtggcagcgaaatgaaacacttcatgatgagatgaaa-gcatattgtaaaggacaaatctctctgctaatatagggcactattatcaGGGTTTCCTCACCTGCCAGA--TGT-ATCATTCATCAGAAGATGTTGCTCAATCCTC-TTTGGGCAAGAACAGCTTTCCACTAACTTCCATTTAAATAAACGAACCCTTGAAAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12233525 309 + 20526591 CGCTGCTTTACAGTCTTTgctggataac----tgtggtc-----acttgaactc-taagatgatcagcctctttcctgtcaagtgggaactgttatcttcccttcttcctccccaagggcatgg--tagaccctgtggcagcgaaatgaaacacctcatgatgagatgaaa-gcatattgtaaaggacaaatctctctgctaatatagggcattattatCCGGATTT---------CCGGA--TGT-ATCATTCATCAGAAGATGTTGCTCAATCCTC-TTTGGGCAAGAACAGCTTTCCACTAACTTCCATTTAAATAAACAAACCCTTGAAAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119206451 318 + 128539186 CGCTGCTTTACAGTCTTTgctggatgac----tgtggtc-----acttgaactc-taaggtgatcagcctctttcctgtcaagtgggaactgttatcttcccttcttcctccccaagggcatgg--tagaccctgtggcagcgaaatgaaacacctcatgatgagatgaaa-gcatattgtaaaggacaaatctctctgctaatatagggcattattatCCGGGTTTCCTCACCTGCCAGA--TGT-ATCATTCATCAGAAGATGTTGCTCAATCCTC-TTTGGGCAAGAACAGCTTTCCACTAACTTCCATTTAAATAAACAAACCCTTGAAAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 526616 309 + 6255621 CGCTGCTTTACAGTCTTTgctggatgac----tgtggtc-----acttgaactc-taagatgatcagcctctttcctgtcaagtgggaactgttatcttcccttcttcctccccaagggcatgg--tagaccctgtggcagcgaaatgaaacacctcatgatgagatgaaa-gcatattgtaaaggacaaatctctctgctaatatagggcattattatCCAGGTTT---------CCAGA--TGT-ATCATTCATCAGAAGATGTTGCTCAATCCTC-TTTGGGCAAGAACAGCTTTCCACTAACTTCCATTTAAATAAACAAACCCTTGAAAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4582113 317 - 8658521 CGCTGCTTTACAGTCTTTgctggatgac----tgtggtc-----actggaactc-taagatgatcagcctc-ttcctgtcaaatgggaactgttatcttcccttcttcctccccaagggcatgg--tagaccctgtggcagcgaaatgaaacacttcatgatgagatgaaa-gcacattgtaaaggacaaatctctctgctaatatagggcactattatcaGGGTTTCCTCACCTGCCAGA--TGT-ATCATTCATCAGAAGATGTTGCTCAATCCTT-TTTGGGCAGGAACAGCTTTCCACTAACTTCCATTTAAATAAATGAACCCTTGAAAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114787356 319 + 124281992 TGCTgctttacactctttgttggatgac----catggtcatgtgacttgaactc-taagatgatcagcctctcttatgtcaagtgggacctgttatctcccctttctcctccccaagggcatgg--caggccctgtggcagcgaaatgaaggacttcatgatgagatgaaa-gtatgttgtaaaggacaaa--tctctgccaatatagggcactatgatcaGGGCTTCCTCACCTGCCAGA--TGT-ATCG-TCATCAGAGGCTGTCACTCAACCCTC-TTTAGGCAAGAAAAGCTTTCTGTTAACTTCATTTTAAATAAATGAA-CCTTGAAAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 430157 322 - 9212255 TGCTGCTTTACACTCTTTgctggatgac----cgtggtcatgtgacttgaactc-taagatgatcagcctctcttatgtcaaatgggacctgttatcttcgctttctcctccccaagggcatag--cagaccctgtggcagcgaaatgaaggacttcatgatgagatgaaa-gtatgttgtaaaggacaaa--tctctgccagtgtagggcactatGGTCAGGGCTTCCTCACCTGCCAGATGTGT-ATCA-TCATCAGAGGTTGTTTCTCAACCCTC-TTTAGGCAAGAAAAGCTTTCCACTAACTTCCATTTAAATAAAGAAACCCTTGAAAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2845456 319 + 4466143 TGCTGCTTCACACTCTTTGCTGGATGAC----TGTGGTCATGGGACTTGAACTC-TAAGATGATCAGCCTCTCTTATGACAAATGGGACCTGTTATCTTCCCTTTCTCCTTCCCAAGGGCATGG--CAGACCCTGTGGCAGAGAAATGAAGGACTTCATGATGAGCTGAAA-GTATGTCGTAAAGGACAAA--TCTCTGCCAACATAGGGCACTATGATCAGGGCCTCCTCACCTGCCAG---TGT-ACCA-TCATCAGGGCTTGTTGCTCAACCCTC-TTTAGGCAAGAAAAGCTTTCCACCAACTTCCATTTAAATAAACAAACTCTTGAAAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1551124 317 + 5364348 TGCTgctctacactctttgctggatgac----tgtggtcatgtgacttgaactc-taagatgaccagcctctcttatgtcaaatgggacctgttatcttccctttctcctccccaagggcatgg--cagaccctgtggcagtgaaatgaaggacttcatgacgagatgaaa-gtatgttgtaaaggacaaa--tctctgccaatatagggCACCATGACCAGGGCTTCCTCACCTGCCAGG--TGG-ACCA-TCATCAGAGCATGT-GCTCAACCCTC---TAGGCAAGAAAAGCTTTCCACTAACTTCCATTTAAATAAACGAACCCTTGAAAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4270311 294 + 7922563 --ctgcta------ctttgctggatgac----tgcagttaggtcacttgaactc-t-------taagacccttttctgtgaaatgggacctattaccctccct---------cccagagtgagg--tagaccctatga-agcaaaatgaaatgcttcatgatgaaatgaaatatgttttataaaggacagagctctctacaaatataaggcactattatcaGGCTTTCCTTACCTGCCAAA--CTTAATCATTCACCACAGTATGTTTCTGACCCCTC------ACAAGAAAAGGTCTCCACTAACTTC-ATTTAAATAAATGAACCCTTGAAGA i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124793506 283 + 151834684 CACTACTTTAACCTCTTTGCTGAATGGCCGATTGTGAT------ATTTGAATTC-TAAGACCATCAGCTTCTCTTCTGTCAGAAGGGACCTGTTATCCCCCATCACTCC------AAGGTGTGG--GTACCTTGGTGGTAGTGAAGGGAAATG-----------------G-GCATAGCCTAAAGAACCTTTCT-TGTGTGAATGTCACCGGCCAT-----GGGGTTCCACCCCTGTTGAG--GTC-ATGG-----CTGTAGCTATTTCTTACGCTTC-TCAGGACATGACAAACCTCTGATGAAATTCCAGTTAAAA----GAACCCTTGGAAA i mm10.chr5 I 1006 I 1 s canFam3.chr26 33134420 311 - 38964690 CAtggctttggactctttgcaagatgac----tgtgaccatgtaacttgacctc-aaagataatcagccccatttctgtcaaatgggacctgctatcctccct---ccctcccgggtggtaggg--tagactctatggcagtgaaataaaatgcttcatgac-----aaaa-gtgccctgtagaggaccaa--tctctacaaatatatgacactgttatcaGGGTTTATTTGCCTGCCAGA--TTT-AT---TCATCAGAAGACCTTACTCATCCCTTTTTTTGTCAAGGTAAGCTTTCCACTAACTTCTATTTAAATAAAGGAATCCTTGAAAA i canFam3.chr26 I 1 I 1 s dasNov3.JH568189 812307 318 - 1116856 CACTAGTTTATA--CTCTGCTGGATGAC----TCTGGCCACATCACTTGAACTC-AAAGGCGATTAGCCCCTCTTTTGTCAAATTGGACCTGTTATCCCACCTCCCTCCTTCCCAGGGTTGTGGGCTAGCCTCTGTGGAAGAGAAATGAAATGCTTCATAATTAAATATAA-GTATAGTGTGAAAGACAACTCTCTCTACAGAAATAAG-CAATATTACTGGGGCTTACACACCTGCCAAA--TTT-ATCATTCATTAGAA---GTTTCTCACCCTTC-TTTTGATAAGAAAAACTTCCCACTAACTTCCATTTCATTAAA-GTGCCCTTGAAAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9448491 818 - 31815103 I e proCoq1.NW_012154285v1 6698066 428 - 9870158 I a score=2683894.000000 s hg38.chr12_KI270834v1_alt 40933 166 + 119498 -GCTTTGGAATGCTAC------TTTTTTATAGGTGGAGCAATACAATTTGAATAGTCTCTTTGAGAAGTATGTGCCCTATCTCATGGATGTGATAGTGGAAGGAATTGTGGATGGAAGACAAGCAGAAAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATGGTAAGA s panTro5.chr12 127326969 166 + 137163284 -GCTTTGGAATGCTGC------TTTTTTATAGGTGGAGCAATACAATTTGAATAGTCTCTTTGAGAAATATGTGCCCTATCTCATGGATGTGATAGTGGAAGGGATTGTGGATGGAAGACAAGCAGAAAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATGGTAAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125677802 166 + 135337776 -GCTTTGGAATGCTGC------TTTTTTATAGGTGGAGCAATACAATTTGAATAGTCTCTTTGAGAAATATGTGCCCTATCTCATGGATGTGATAGTGGAAGGGATTGTGGATGGAAGACAAGCAGAAAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATGGTAAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8191181 166 - 8369578 -GCTTTGGAATGCTGC------TTTTTTATAGGTGGAGCAATACCATTTGAATAGTCTCTTTGAGAAATATGTGCCCTATCTCATGGATGTGATAGTGGAAGGGATAGTGGATGGAAGACAAGCAGAAAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATGGTAAGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97839261 166 + 106955855 -GCTTTGGAATGCTGC------TTTTTTATAGGCGGAGCAATACAATTTGAATAGTCTCTTTGAGAAATATGTGCCCTATCTCATCGATGTGATAGTGGAAGGGATAGTGGATGGAAGACAAGCAGAGAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATGGTAAGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123964133 166 + 133663169 -GCTTTGGAATGCTGC------TTTTTTACAGGTGGAACAATACAATTTGAATAGTCTCTTTGAGAAATATGTGCCCTATCTCGTGGATGTGATAGTGGAAGGGATAGTGGATGGAAGACAAACAGAGAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATGGTAAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128211505 166 + 137757926 -GCTTTGGAATGCTGC------TTTTTTACAGGTGGAACAATACAATTTGAATAGTCTCTTTGAGAAATATGTGCCCTATCTCGTGGATGTGATAGTGGAAGGGATAGTGGATGGAAGACAAACAGAGAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATGGTAAGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10611388 166 - 16319837 -GCTTTGGAATGCTGC------TTTTTTACAGGTGGAACAATACAATTTGAATAGTCTCTTTGAGAAATATGTGCCCTATCTCgtggatgtgatagtggaagggatagtggatgGAAGACAAACAGAGAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATGGTAAGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12233834 166 + 20526591 -GCTTTGGAATGCTGC------TTTTTTACAGGTGGAACAATACAATTTGAATAGTCTCTTTGAGAAATATGTGCCCTATCTCGTGGATGTGATAGTGGAAGGGATAGTGGATGGAAGACAAACAGAGAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATGGTAAGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119206769 166 + 128539186 -GCTTTGGAATGCTGC------TTTTTTACAGGTGGAACAATACAATTTGAATAGTCTCTTTGAGAAATATGTGCCCTATCTCATGGATGTGATAGTGGAAGGGATAGTGGATGGAAGACAAACAGAGAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATGGTAAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 526925 166 + 6255621 -GCTTTGGAATGCTGC------TTTTTTACAGGTGGAACAATACAATTTGAATAGTCTCTTTGAGAAATATGTGCCCTATCTCGTGGATGTGATAGTGGAAGGGATAGTGGATGGAAGACAAACAGAGAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATGGTAAGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4582430 166 - 8658521 -GCTTTGGAATGCTGC------TTTTTTATAGGTGGAACAATACAATTTGAATAGTCTCTTTGAGAAATATGTGCCCTATCTCATGGATGTGATAGTGGAAGGGATAGTGGACGGAAGACAAACAGAGAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATGGTAAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114787675 168 + 124281992 -GCTTTGGAATGCTGC----TTTTTTTAATAGGTGGAGCAATACAATTTGAATAATCTCTTTGAGAAATATGTGCCCTATCTCATGGATGTGATAGTGGAGGGGACGGTGGATGGGAGACAGACAGAGAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATGGTAAGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 430479 172 - 9212255 -GCTTTGGAATGCTGCTTTTTTTTTTTAATAGGTGGAGCAATACAATTTGAATAATCTCTTTGAGAAATATGTGCCCTATCTCATGGATGTGATAGTGGAGGGGGTGATGGATGGGAGACAAACAGAGAAGCTGAAGACGATAGTTCCTCAGACAGACCTGAATATGGTAAGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2845775 171 + 4466143 -GCTTTGGAATGCTGC-TTTTTTTTTTAATAGGTGGAGCAATACAATTTGAATAATCTCTTTGAGAAATATGTACCCTATCTCATGGATGTGATAGTGGAGGGGATGGTGGATGGAAGACAAACAGAGAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATGGTAAGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1551441 167 + 5364348 -GCTTTGGAATGCTGC-----TTTTTTTATAGGTGGAACAATACAATTTGAATAATCTCTTTGAGAAATATGTGCCCTATCTCATGGATGTGATAGTGGAGGGGACGGTGGATGGCAGACAAACAGAGAAGCTGAAGACAGTAGTTCCTCAGACAGACCTCAATATGGTAAGA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6698494 166 - 9870158 -GCTTTGGAATTCTGC------TCTTTCGTAGCTGGAGCAAAGCAACTTAGATGGTCTCTTCAGGAAATACGTGCCCTACCTCATCGACGTGATCGTCGAGGGGATCGTGGACGGGAGACAGGGCGAGAAGCTGAAGACGATCGTGCCTCAGACGGACCTAAACATGGTGAGA i proCoq1.NW_012154285v1 I 428 I 247 s otoGar3.GL873618 4270606 166 + 7922563 -GCTTTGGAATTCTGC------CCTTTTCTAGGTGGAGCAAAGCATCTTAGATAGTCTGTTTGGGAAGTATGTGCCCTATCTCATCGATGTGATAGTAGAAGGGATAGTGGATGGAAGACAAGGAGAGAAGCTGAAGACAATCGTCCCACAGACAGACCTAAATATGGTAAGA i otoGar3.GL873618 I 1 C 0 s mm10.chr5 124793790 163 + 151834684 -GATTCGGATCTCTCC---------TCCACAGGTGGAGCAAAAGTATTTAAATGACCTCTTCGAGAAATATGTGCCCACTCTCATCGACATGATCATAGAGGGGATCGTGGACGGGAGGCAAGGGGAGAAGCTGAAGATGGTGGTTCCCCAGACAGACCTAAATATGGTAAGA i mm10.chr5 I 1 C 0 s canFam3.chr26 33134732 166 - 38964690 -GCATTGGAATTCTGC------TCTTTTATAGGCAGAGCATGGCAATTTGGAGACTCTCTTTGAGAAATATGTGCCCTATCTCATGGATATGATAGTGGAAGGGATAGTGGATGGAAGACAAGGCGAGAAGCTGAAGACAGTTGTCCCTCAGACAGATCTAAATATGGTGAGA i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 812625 167 - 1116856 TTCTTTGGTATTTTGC------TCTTTTTCAGATAGAGCAAGGCAATTTAAATAATCTCTTTGAGAAATATGTGCCTTATCTTACTGCTGTGATAGTAGAAGGAATAGTCGATGGAAAACAAGGAGATAAGCTGAAGACTATCGTTCCACAGACAGAGCTAAATATGGTAAGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9448491 818 - 31815103 I a score=2771382.000000 s hg38.chr12_KI270834v1_alt 41099 244 + 119498 AATGATCCCTGCTGTTAGCAAAAAGAAATTCTTTCCTAAAGACAAGCTCACGGTAGGGTTTTAAAGGGAGTGAAGATGCCAGACAGGGTGAACAGTA--GCATTGTTGGTCAGTGCCAAGGCGGGCGCCGTGCTT-GC--------TTTTGTG--------CAAGTCAAGATACTGGGTTCCATCTGTCTGAACCAACATGTTGGGT-CTT-ATGCTCCCATCGCTCTGGGACCTGGGA-TCCCAGGATTTATGACTGGAATGGAC s panTro5.chr12 127327135 244 + 137163284 AATGATCCCTGCTGTTAGCAAAAAGAAATTCTTTCCTAAAGACAAGCTCACGGTAGGGTTTTAAAGGGAGTGAAGGTGCCAGACAGGGTGAACAGTA--GCATTGTTGGTCAGTGCCAAGGCGGGCGCCATGCTT-GC--------TTTTGTG--------CAAGTCAAGATACTGGGTTCCATCTGTCTGAACCAACATGTTGGGT-CTT-ATGCTCCCATCGCTCTGGGACCTGGGA-TCCCAGGATTTATGACTGGAATGGAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125677968 244 + 135337776 AATGATCCCTGCTGTTAGCAAAAAGAAATTCTTTCCTAAAGACAAGCTCACGGTTGGGTTTTAAAGGGAGTGAAGGTGCCAGACAGGGTGAACAGTA--GCATTGTTGGTCAGTGCCAAGGCGGGCGCCATGCTT-GC--------TTTTGTG--------CAAGTCAAGATACTGGGTTCCATCTGTCTGAACCAACATGTTGGGT-CTT-ATGCTCCCATCGCTCTGGGACCTGGGA-TCCCAGGATTTATGACTGGAATGGAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8191347 244 - 8369578 AATGATCCCTGCTGTTAGCAAAAAGAAATTCTTTCCTAAAGACAGGCTCACGGTAGGGTTTTAAAGGGAGTGAAGATGCCAGACAGGGTGAACAGTA--GTATTGTTGGTCAGTGCCAAGGCGGGCGCCATGCTT-GC--------TTTTGTG--------CAAGTCAAGATACTGGGTTCCATCTGTCTGAACCAACATGATGGGT-CTT-ATGCTCCCATCGCTCTGGGACCTGGGA-TCCCAGGATTTATGACTGGAATGGAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97839427 243 + 106955855 AATGATCCCTGCTGTTAGCAAAAAGAAATTCTTTCCTAAAGACAGGCTCACGGCAGGCTTTTAAGGGGAGTGAAGATGCCAGAAAGGGTGAACAGCA--GCATTGTTGGTCAGTGCCAAGG-AGGCGCCATGCTT-CC--------TTTTGTG--------TAAGTCGAGATACTGGGTTCCATCTGTTTGAACCAACATGACGGGT-CAT-ATGCTCCCATCACTCTGGGACCTGGGA-TCCCAGGATTTATGACTGGAATGGAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123964299 244 + 133663169 AACGATCCCTGCTGTTAGCAAAAAGAAATTCTTTCCTAAAGACAGGCTCACAGTAGGGTTTTAAGGGGAGTGAAGATGCCAGACAGGGTAAACAGTA--GCATTGTTGGTTAGTGCCAAGGAGGGCACCATGCTT-GC--------TTTTGTG--------CAAGTCAAGATACTGGGTTCCATCTGTCGGAACCAACGTGATGGCT-CAT-ATGCTGCCATCGCTCTGGGACCTGGGA-TCCCAGGATTTATGACTGGAATGGAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128211671 244 + 137757926 AACGATCCCTGCTGTTAGCAAAAAGAAATTCTTTCCTGAAGACAGGCTCACAGTAGGGTTTTAAGGGGAGTGAAGATGCCAGACAGGGTAAACAGTA--GCATTGTTGGTCAGTGCCAAGGAGGGCGCCATGCTT-GC--------TTTTGTG--------CAAGTCAAGATACTGGGTTCCATCTGTCGGAACCAACGTGATGGGT-CAT-ATGCTGCCCTCGCTCTGGGACCTGGGA-TCCCAGGATTTATGACTGGAATGGAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10611554 244 - 16319837 AACGATCCCTGCTGTTAGCAAAAAGAAATTCTTTCCTAAAGACAGGCTCACAGTAGGGTTTTAAGGGGAGTGAAGATGCCAGACAGGGTAAACAGTA--GCATTGTTGGTCAGTGCCAAGGAGGGCGCCATGCTT-GC--------TTTTGTG--------CAAGTCAAGATACTGGGTTCCATCTGTCGGAACCAACGTGATGGGT-CAT-ATGCTGCCCTCGCTCTGGGACCTGGGA-TCCCAGGATTTATGACTGGAATGGAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12234000 244 + 20526591 AACGATCCCTGCTGTTAGCAAAAAGAAATTATTTCCTAAAGACAGGCTCACAGTAGGGTTTTAAGGGGAGTGAAGATGCCAGACAGGGTAAACAGTA--GCATTGTTGGTCAGTGCCAAGGAGGGCGCCATGCTT-GC--------TTTTGTG--------CAAGTCAAGATACTGGGTTCCATCTGTCGGAACCAACGTGATGGGT-CAT-ATGCTGCCATCGCTCTGGGACCTGGGA-TCCCAGGATTTATGACTGGAATGGAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119206935 243 + 128539186 AACGATCCCTGCTGTTAGCAAAAAGAAATTCTTTCCTAAAGACAGGCTCACAGTAGGGTTTTAAGGGGAGTGAAGATGCCAGACAGGGTAAACAGTA--GCATTGTTGGTCAGTGCCAAGGAGGGCGCCATGCTT-GC---------TTTGTG--------CAAGTCAAGATACTGGGTTCCATCTGTCGGAACCAACGTGATGGGT-CAT-ATGCTGCCATCGCTCTGGGACCTGGGA-TCCCAGGATTTATGACTGGAGTGGAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 527091 244 + 6255621 AACGATCCCTGCTGTTAGCAAAAAGAAATTATTTCCTAAAGACAGGCTCACAGTAGGGTTTTAAGGGGAGTGAAGATGCCAGACAGGGTAAACAGTA--GCATTGTTGGTCAGTGCCAAGGAGGGCGCCATGCTT-GC--------TTTTGTG--------CAAGTCAAGATACTGGGTTCCATCTGTCGGAATCAACGTGATGGGT-CAT-ATGCTACCATCGCTCTGGGATCTGGGA-TCCCAGGATTTATGACTGGAATGGAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4582596 244 - 8658521 AACGATCCCTGCTATTAGCAAAAAGAAATTCTTTCCTAAAGACAGGCTCACAGTAGGGTTTTAAGGGGAGTGAAGATGCCAGACAGGGTAAACAGTA--GCATTGTTGGTCAGTGCCAAGGAGGGCGCCATGCTT-GC--------TTTTGTG--------CAAGTCAAGATACTGGGTTCCATCTGTCGGAACCAACATGATGGGT-CAT-ATGCTGCCATCGCTCTGGGACCTGGGA-TCCCAGGATTTATGACTGGAATGGAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114787843 242 + 124281992 AACGGTCCCTGCTGTCAGCAAAAAGAAATTCCTTCCTAAAGACGGGCCCACGGTGGGGCTTTAAGGGGAATGAAGATGCCAGTCAGGGTAAGCAGTA--GCATTGTGGGCCGGTGCCAAGGAGGGTGCCATGCTT-GC--------TTCTGTG--------CAGGTCAAGATACTGGGTTCCATCTGTCTGAACCAACATGAGGGGT-CAT-ATGTT-CCATC-CTCTGGGACCTGGAA-TCCTGGGATTTATGACTGGAACAGAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 430651 243 - 9212255 AACGGTCCCTGCCGTCAGCAAAAAGAAATTCCTTCCTAAAGACAGGCCCACGGTGGGGCTTTAAGGGGAGTGAAGATGCCAGTCAGGGTAAGCGGTA--GCATTGTGGGCCGGTGCCAAGGAGGGTGCCATGCTT-GC--------TTCTGTG--------CAGGTCAAAATACTGGGTTCCATCTGTCTGAACCAACATGAGGGGT-CAT-ATGTTCCCATC-CTCTGGGACCAGGAA-TCCCGGGATTTATGACTGGAACAGAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2845946 228 + 4466143 AACGGTCCCTGCGGTCAGCAAAAAGAAATTCCTTCCTACAGACAGGCCCAC---GGGGCCTTAAGGGGAGTGGAGATGCCAGTCAGGGTAAGCAGTA--GCATTGTGGACC------------GGTGCCATGCTT-GC--------TTCTGTG--------CAGGTCAAGATACTGGGTTCCATCTGTCTGAACCAACATGAGGGGT-CAT-ATGTTCCCATC-CTCTGGGTCCCGGAA-TCCTGGGATTTATGATTGGAACGGAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1551608 238 + 5364348 AACGGTCCCTGCTGTCAGCAAAAAGAAATTCCTTCCTAAAGACAGGCCCACGGTGGGGCTTTAAGGGGAGTGAAGATGCCAGTCAGGGTAAGTAGTA--GCATT---GGCCGGTGCCAAGGA-GGTGCCATGCTT-GC--------TTCTGTG--------CAGGTCAAGA-ACTGGGTTCCATCTGTCTGAACCAACATGAGGGGT-CAT-ATGTTCCTGTC-CTCTGGGACCCGGAA-TCCCGGGATTTATGACTGGAACAGAC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4270772 242 + 7922563 GATGATCACTGCTGCTAGCAAAAAGAAATTCTTCCCTAAACATAGACCTGCAGTGGGCTTTTAAGGGGTGTGAAGATGCCAGAT-GGGTAACCTGTG--ACATCACGGCTTAGTATGAGAGACAACATAACACCCAGC--------GTTTGTGACTCCACACAAGTCAAGA---TGGGCTCCATCTGTCTGAACTGATATGGCAGGA-CATAATGTCCCCATCACTCTGGGAT---------CCAGGACTTGGGACTGCAACTGAT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124793953 226 + 151834684 ACACTTCTCCGCTGAGGGCAAAAGGGAAGGCTTCCCGAGAGAT-------------GGTCCTGTGGGGTGGGGGAGGGGCTGACAGGG--ACCAGTGATGCCTCGTGGATGACTATCAGGGCA-----TATTCTT-GT------GGCCCCATG--------CAAGCCGAGGTGCCAGGCTCCATGTGTCTGAACCAATATGGCGGCT--AT-AGG-TGCCATCACAGTGGGACAGGGGACCCCCAGGACGCAGGATAGGACGGTA- i mm10.chr5 C 0 C 0 s canFam3.chr26 33134898 243 - 38964690 AATTATCTCTG---TCAGCAATGAGAAAGTCTTCCTTAAAGGTGGACCCACAG------TCCAAGGGAAACAGAGATGCCAGA-GGGATAAGTTGTA--ACATTGTAGGTTACTGACAATAAAGACACAGCACTT-CCCGTAATGACCCTGTG--------CAGGACAAGATGACAGGCTCCATCTGACTGAACCAATATGGTGGGTTTGT-AAGCTTCCATCACTCTGGGACCTGCTA-TCCCAAGATGTATGACCAGAACTGAC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 812792 210 - 1116856 AACCATTACTATGGTTAGCCAAAAGAAATTCACCCCTAAAGATCGACTAACTA--------------------------CAGATAGATTGA-----A--ACATTGCTTGTTACTGTCAA----GATGCAATACTT-CC--------CTTTGTGACACTGGGCAAGGTAAGATGCTGGACTCCGTCCATTGGGACCAATATGGCGTGT-CAT-ATGTTCCTCTCACTCTGGAA--------TCCCAGGATTTATGACCAGAACTGAC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9448491 818 - 31815103 I e proCoq1.NW_012154285v1 6698660 247 - 9870158 I a score=-7608.000000 s hg38.chr12_KI270834v1_alt 41343 7 + 119498 T-------------CTGTGG s panTro5.chr12 127327379 7 + 137163284 T-------------CTGGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125678212 7 + 135337776 T-------------CTGGCG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8191591 6 - 8369578 T-------------CTGG-G i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97839670 7 + 106955855 T-------------CTGTGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123964543 7 + 133663169 T-------------CTGTGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128211915 7 + 137757926 T-------------CTGTGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10611798 20 - 16319837 TCTGCGGGGGTGGACTGTGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12234244 20 + 20526591 TCTGTGGGGGTGGACTGTGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119207178 18 + 128539186 CC--TGGGGGTGGACTGTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 527335 20 + 6255621 TCTGTGGGGGTGGACTGTGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4582840 20 - 8658521 TCTGTGGGTATGGACTGTGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114788085 7 + 124281992 T-------------CTGTGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 430894 7 - 9212255 T-------------CTGGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2846174 7 + 4466143 T-------------CTGTGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1551846 7 + 5364348 T-------------TTGTGT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9449309 7 - 31815103 T-------------CTGTGT i micMur3.chr21 I 818 C 0 s otoGar3.GL873618 4271014 7 + 7922563 T-------------CTGTGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124794179 6 + 151834684 --------------TCATGG i mm10.chr5 C 0 C 0 s canFam3.chr26 33135141 7 - 38964690 -------------CCTGGGC i canFam3.chr26 C 0 I 8 s dasNov3.JH568189 813002 5 - 1116856 --------------CCTTG- i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6698660 247 - 9870158 I a score=4924412.000000 s hg38.chr12_KI270834v1_alt 41350 267 + 119498 GGGTGGACTATGTGGGCTGAACCAGATATTTTCCTGTGAACCAGGTAACCCAGTTAGCCAAGATGTTGGATGCGTTGCTAGAAGGAGAAATAGAAGACCTTGACCTGCTGGAGTGCTACTTCCTGGAGGCTTTGTACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGATGAAATTTGACGAATATATCAAACGCCTTGCTTCTTTGTCTACTGTTGACACAGAAGGAGTTTGGGCCAACCCTGGGGAACTGCCAGGTGGGA s panTro5.chr12 127327386 267 + 137163284 GGGTGGACTATGTGGGCTGAACCAGATATTTTCCTGTGAACCAGGTAACCCAGTTAGCCAAGATGTTGGATGCGTTGCTAGAAGGAGAAATAGAAGACCTTGACCTGCTGGAGTGCTACTTCCTGGAGGCTTTGTACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGATGAAATTTGACGAATATATCAAACGCCTTGCTTCTTTGTCTACTGTTGACACAGAAGGAGTTTGGGCCAACCCTGGGGAACTGCCAGGTGGGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125678219 267 + 135337776 GGGTGGACTATGTGGGCTGAACCAGATATTTTCCTGTGAACCAGGTAACCCAGTTAGCCAAGATGTTGGATGCGTTGCTAGAAGGAGAAATAGAAGACCTTGACCTGCTGGAGTGCTACTTCCTGGAGGCTTTGTACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGATGAAATTTGACGAATATATCAAACGCCTTGCTTCTTTGTCTACTGTTGACACAGAAGGAGTTTGGGCCAACCCTGGGGAACTGCCAGGTGGGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8191597 267 - 8369578 GGGTGGACTATGTGGGCTGAACCAGATATTTTCCTGTGAACCAGGTAACCCAGTTAGCCAAGATGTTGGATGCGTTGCTAGAAGGAGAAATAGAAGACCTTGACCTGCTGGAGTGCTACTTCCTGGAGGCTTTGTACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGATGAAATTTGACGAATATATCAAACGCCTTGCTTCTTTGTCTACTGTTGACACAGAAGGAGTTTGGGCCAACCCTGGAGAACTGCCAGGTGGGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97839677 267 + 106955855 GGGTGGACTATGTGGGCTGAACCAGATATTTTCCTGTGAACCAGGTAACCCAGTTAGCCAAGATGCTGGATGCGTTACTAGAAGGAGAAATAGAAGACCTCGACCTGCTGGAGTGCTACTTCCTGGAGGCCCTGTACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGATGAAATTTGATGAATATATCAAACGTCTTGCTTCTTTGTCTACTGTTGACACAGAAGGAGTTTGGGCCAACCCTGGGGAACTGCCAGGTGGGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123964550 267 + 133663169 GGGTGGACTATGTGAGCTGAACCAGATGTTTTCCTGTGAACCAGGTAACCCAGTTAGCCAAGATGTTGGATGCATTACTAGAAGGAGAAATAGAAGACCTCGACCTGCTGGAGTGCTACTTCCTGGAGGCTCTATACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGACGAAATTTGACGAATATATCAAACGCCTTGCTTCTTTGTCTACTGTTGACACAGAAGGAGTTTGGGCCAACCCTGGGGAACTGCCAGGTGGGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128211922 267 + 137757926 GGGTGGACTATGTGAGCTGAACCAGATGTTTTCCTGTGAACCAGGTAACCCAGTTAGCCAAGATGTTGGATGCGTTACTAGAAGGAGAAATAGAAGACCTCGACCTGCTGGAGTGCTACTTCCTGGAGGCTCTATACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGATGAAATTTGACGAATATATCAAACGCCTTGCTTCTTTGTCTACTGTTGACACAGAAGGAGTTTGGGCCAACCCTGGGGAACTGCCAGGTGGGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10611818 267 - 16319837 GGGTGGACTCTGTGAGCTGAACCAGATGTTTTCCTGTGAACCAGGTAACCCAGTTAGCCAAGATGTTGGATGCGTTACTAGAAGGAGAAATAGAGGACCTCGACCTGCTGGAGTGCTACTTCCTGGAGGCTCTATACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGATGAAATTTGACGAATATATCAAACGCCTTGCTTCTTTGTCTACTGCTGACACAGAAGGAGTTTGGGCCAACCCTGGGGAACTGCCAGGTGGGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12234264 267 + 20526591 GGGTGGACTATGTGAGCTGAACCAGATGTTTTCCTGTGAACCAGGTAACCCAGTTAGCCAAGATGTTGGATGCGTTACTAGAAGGAGAAATAGAGGACCTCGACCTGCTGGAGTGCTACTTCCTGGAGGCTCTATACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGACGAAATTTGATGAATATATCAAACGCCTTGCTTCTTTGTCTACTGTTGACACAGAAGGAGTTTGGGCCAACCCTGGGGAACTGCCAGGTGGGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119207196 267 + 128539186 GGGTGGACTATGTGAGCTGAACCAGATGTTTTCCTGTGAACCAGGTAACCCAGTTAGCCAAGATGTTGGATGCGTTACTAGAAGGAGAAATAGAAGACCTCGACCTGCTGGAGTGCTACTTCCTGGAGGCTCTATACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGACGAAATTTGACGAATATATCAAACGCCTTGCTTCTTTGTCTACTGTTGACACAGAAGGAGTTTGGGCCAACCCTGGGGAACTGCCAGGTGGGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 527355 267 + 6255621 GGGTGGACTATGTGAGCTGAACCAGATGTTTTCCTGTGAACCAGGTAACCCAGTTAGCCAAGATGTTGGATGCATTACTAGAAGGAGAAATAGAGGACCTCGACCTGCTGGAGTGCTACTTCCTGGAGGCTCTATACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGACGAAATTTGACGAATATATCAAACGCCTTGCTTCTTTGTCTACTGTTGACACAGAAGGAGTTTGGGCCAACCCTGGGGAACTGCCAGGTGGGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4582860 267 - 8658521 GGGTGGACTATGTGAGCTGAACCAGATGTTTTCCTGTGAACCAGGTAACCCAGTTAGCCAAGATGTTGGATGCGTTACTAGAAGGAGACATAGAAGACCTCGACCTGCTGGAGTGCTACTTCCTGGAGGCTCTCTACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGATGAAATTTGACGAATATATCAAACGCCTTGCTTCTTTGTCTACTGTTGACACAGAAGGAGTTTGGGCCAACCCTGGGGAACTGCCAGGTGGGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114788092 267 + 124281992 GGGTGGACTGTGTGGGCTGAACCAGATATTTTCCTGTGAACCAGGTAACCCAGTTAGCCAAGATGTTGGACGCATTACTGGAAGGAGAAATAGAGGACTCGGACCTGCTGGAGTGCTACTTCCTGGAGGCTCTGTACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGGTGAAATTTGACGAATGTATCAAACGCCTTGCTTCCTTGACTACCGTTGAGACAGAAGGAGTTTGGGCCAGCCCTGGGGAACTGCCAGGTGGGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 430901 267 - 9212255 GGGTGGTCCGTGTGGGCTGAACCAGATATTTTCCTGTGAACCAGGTAACCCAGTTAGCCAAGATGTTGGACGCGTTACTAGAAGGAGAAACAGAAGACCCTGACCTGCTGGAGTGCTACTTCCTGGAGGCTCTGTACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGGCGAAATTTGACGAATGCATCAAACGCCTTGCTTCCTTGACTACTGTTGAGACGGAAGGAGTTTGGGCCAGCCCTGGGGAACTGCCAGGTGGGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2846181 267 + 4466143 GGGTGGACTGTGTGGGCTGAACCAGATATTTTCCTGTGAACCAGGTAACCCAGTTGGCCAAGATGTTGGACGCGTTACTAGAAGGAGAAATAGAGGACCCTGACCTGCTGGAGTGCTACTTCCTGGAGGCTCTGTACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGGTGAAATTTGATGAATGTATCAAACGCCTTGCTTCCTTGACTACTGTTGAGACGGAAGGAGTTTGGGCCAGCCCTGGGGAACTGCCAGGTGGGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1551853 267 + 5364348 AGGTGGCCTGTGTGGGCTGAACCAGATATTTTCCTGTGAACCAGGTAACCCAGTTAGCCAAGATGTTGGACGCGTTACTAGAAGGAGAAATAGAGGATCCTGACCTGCTGGAGTGCTACTTCCTGGAGGCTCTGTACTGCTCGCTGGGAGCCTCCCTGCTTGAGGATGGAAGGGTGAAATTTGATGAATGTATCAAACGCCTTGCTTCCTTGACTACTGTTGAGACGGATGGAGTTTGGGCCAGCCCTGGGGAACTGCCAGGTGGGA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9449316 267 - 31815103 GGGCGGAATATACGGGCTGAACCAGGCATTTTCCTGTGAACCAGGTGACTCAGTTAACCAAGATGCTGGATTCGTTACTAGAAGGAGAGATCGAGGACCCCGAGCTGCTAGAGTGCTACTTCTTGGAGGCCCTGTACTGCTCTCTGGGCGCCGCCCTGCTCGAGGACGGAAGGGTCAAATTTGACGAATGCATTAAATGCATGGCTTCTTTGCCTACCGCTGACACAGAAGGGGTCTGGGCCAAACCCGGGGAATTGCCAGGTAGGA i micMur3.chr21 C 0 I 239 s proCoq1.NW_012154285v1 6698907 267 - 9870158 GGGTGGAATACGTGGGCTGAACCAGGCATTTCCCCGTGAACCAGGTGGCCCAGTTAACCAAGATGCTGGATGCGTTGCTGGACGGAGAGGTAGAGGACCCTGAGCTGCTGGAGTGCCACTTCCTGGAGGCGCTGTACTGCTCGCTGGGGGCCGCCCTGCTCGAGGACGGAAGGGCCAGATTTGACGAGTGTATTAAACGCATCGCTTCTTTGCCCACCGCCGACACGGAAGGAGTCTGGGCCAAACCCGGGGAATTGCCAGGTAGGA i proCoq1.NW_012154285v1 I 247 C 0 s otoGar3.GL873618 4271021 267 + 7922563 GGGTAGAATATATGAACTGAACCAGATCTTTTCCTGTGAACCAGGTAACCCAGTTAACCAAGATGTTGGATTCATTACTAGAAGGAGAAATAGAGGACCCTGACCTACTGGAGTGCTTCTTCCTAGAGGCTCTGTACTGCTCTCTGGGTGCCTCCCTGCTGGAGGATGGAAGGGCTAAATTTGATGAGTGTATCAAACGCATTTCTTCTTTGCCTACTGCTGACACAGAAGGAATTTGGGCCAAACCTGGGGAATTGCCAGGTAGGA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124794185 263 + 151834684 GGGTCGGAAAGGTGGGCTGAGACAGGCGTTT---TGTG-ACCAGGTGACCCAGTTAACCAGGATGTTGGATTCGCTGCTAGAAGGAGAAATCGAGGATCTTGACCTGCTAGAGTGCTTCTTCCTGGAGGCTCTCTACTGCTCGCTGGGCTCCTCCCTGCTTGAGGAGGGAAGGGTGAAGTTTGATGAGTGTATCAAACGCCTCTCGTCAATGCCCACTGTGGATTCGGAAGGGAACTGGGCCCGTCCCGGGGAACTGCCAGGTAGGA i mm10.chr5 C 0 C 0 s canFam3.chr26 33135156 266 - 38964690 GAGTGGAATATATGGGCT-CATCAGAGATTTTCCTGTGCACTAGGTAACCCAGTTAACCAAGATGTTGGATGCACTACTAGAAGGAGAAATAGAAGATCCTGACCTTTTGGAGTGCTATTTCTTAGAGGCTCTGTACTGTTCTTTGGGTGCTTCTCTGCTCGAGGATGGAAGGATTAAATTTGATGAATGTATTAAACGCCTTGCTTCTTTGCCTTCTGCTGATACGGAAGGGGAATGGGCCAACCCTGGGGAATTGCCAGGTAAGA i canFam3.chr26 I 8 C 0 s dasNov3.JH568189 813007 267 - 1116856 GGTTGGAATATATGGGCTGAACAAGGCATTTTCCTGTGAACCAGGTAACCCAGTTGACCAGGATGTTGGACGCGTTGCTAGAAGGAGAAATAGAAGATCCCGATCTCCTGGAGTGCTTCTTCCTAGAGGCTCTGTATTGCTCCCTGGGGGCCTCTCTAATCGAGGATGGAAGGATTAAATTTGATGAATGTATTAAACGCATTGCTTCACTGCCTACTGCTGATACAGCAGGGGTTTGGGCCAGTCCTGGGAAATTGCCAGGTAGGA i dasNov3.JH568189 C 0 C 0 a score=37490.000000 s hg38.chr12_KI270834v1_alt 41617 2 + 119498 AC s panTro5.chr12 127327653 2 + 137163284 AC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125678486 2 + 135337776 AC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8191864 2 - 8369578 AC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97839944 2 + 106955855 AC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123964817 2 + 133663169 AC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128212189 2 + 137757926 AC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10612085 2 - 16319837 AC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12234531 2 + 20526591 AC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119207463 2 + 128539186 AC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 527622 2 + 6255621 AC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4583127 2 - 8658521 AC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114788359 2 + 124281992 AC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 431168 2 - 9212255 AC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2846448 2 + 4466143 AC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1552120 2 + 5364348 AC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6699174 2 - 9870158 AC i proCoq1.NW_012154285v1 C 0 I 1298 s otoGar3.GL873618 4271288 2 + 7922563 AC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124794448 2 + 151834684 AT i mm10.chr5 C 0 C 0 s canFam3.chr26 33135422 2 - 38964690 AC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 813274 2 - 1116856 AC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449583 239 - 31815103 I a score=1623768.000000 s hg38.chr12_KI270834v1_alt 41619 148 + 119498 CGAGTGTCGCCTG-TTTCCCTGCTCTGAGTGCCTTTGGTTAAATTTCTAGAGGAAGTGAATGAG-CTTTTCCATATTTCTGTCTGTATGAGTTTTCCAGATTGTTTGCTTCTTTAGAGAAACATGCAATGGTCAGAGCACATGGCGGAAC s panTro5.chr12 127327655 148 + 137163284 CGAGTGTCGCCTG-TTTCCCTGCTCTGAGTGCCTTTGGTTAAATTTCTAGAGGAAGTGAACGAG-CTTTTCCATCTTTCTGTCTGTATGAGTTTTCCAGATTGTTTGCTTCTTTAGAGAAACATGCAATGGTCAGAGCACATGGCGGAAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125678488 148 + 135337776 CGAGTGTCGCCTG-TTTCCCTGCTCTGAGTGCCTTTGGTTAAATTTCTAGAGGAAGTGAACGAG-CTTTTCCATCTTCCTGTCTGTATGAGTTTTCCAGATTGTTTGCTTCTTTAGAGAAACATGCAATGGTCAGAGCACATGGCGGAAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8191866 148 - 8369578 CGAGTGTCGCCTG-TTTCCCTGCTCTGAGTGCCTTTGGTTAAATTTCTAGAGGAAGTGAACGAG-CTTTTCCGTATTTCTGTCTGTATGAGTTTTCCAGATTGTTTGCTTCTTTAGAGAAACATGCAATGGTCAGAGCACATGGCGGAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97839946 148 + 106955855 CGAGTGTCGCCTG-TTTCCCTGCTCTCAGTGCCTTTGGTTAAATTTCTAGAGGAAGCGAACGAG-CTTTTCCATATTTCTGTCTGTATGAGTTTTCCAGATTCTTTGCTTCTTTAGAGAGACATGCAATGGTCAGAGCACATGGCGGAAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123964819 148 + 133663169 CGAGTGTCGCCTG-TTTCCCTGCTCTGAGTGCCTTTGGTTAAATTTCTAGAGGAAATGAACAAG-CTTTTCCACATTTCTGTCTGTCTGAGTTTTCCAGGTTGTTTGCTTCTTTAGAGAAACATGCAATGGTCAGAGCACATGACGGAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128212191 148 + 137757926 CGAGTGTCGCCTG-TTTCCCTGCTCTGAGTGCCTTTGGTTAAATTTCTAGAGGAAATGAACAAG-CTTTTCCACATTTCTGTCTGTCTGAGTTTTCCAGGTTGTTTGCTTCTTTAGAGAAACATGCAATGGTCAGAGCACATGACGGAGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10612087 148 - 16319837 CGAGTGTCGCCTG-TTTCCCTGCTCTGAGTGCCTTTGGTTAAATTTCTAGAGGAAATGAACAAG-CTTTTCCACATTTCTGTCTGTCTGAGTTTTCCAGGTCGTTTGCTTCTTTAGAGAAACATGCAATGGTCAGAGCACATGACGGAGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12234533 148 + 20526591 CGAGTGTTGCCTG-TTTCCCTGCTCTGAGTGCCTTTGGTTAAATTTCTAGAGGAAATGAACAAG-CTTTTCCACATTTCTGTCTGTCTGAGTTTTCCAGGTTGTTTGCTTCTTTAGAGAAACATGCAATGGTCAGAGCACATGACGGAGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119207465 148 + 128539186 CGAGTGTCGCCTG-TTTCCCTGCTCTGAGTGCTTTTGGTTAAATTTCTAGAGGAAATGAACAAG-CTTTTCCACATTTCTGTCTGTATGAGTTTTCCACGTTGTTTGCTTCTTTAGAGAAACATGCAATGGTCAGAGCACATGATGGAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 527624 148 + 6255621 CGAGTGTCACCTG-TTTCCCTGCTCTGAGTGCCTTTGGTTAAATTTCTAGAGGAAATGAACAAG-CTTTTCTACATTTCTGTCTGTCTGAGTTTTCCAGGTTGTTTGCTTCTTTAGAGAAACATGCAATGGTCAGAGCACATGATGGAGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4583129 148 - 8658521 CAAGTGTCGCCTG-TTTCCCTGCTCTGAGTGCCTTTGGTTAAATTTCTAGAGGAAGTGAACAAG-CTTCTCCATATTTCTGTCTGTATGAGTTTTCCAGGTTGTTTGCTTCTTTAGAGAAACATGCAATGGTCAGAGCACATGCTGGAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114788361 121 + 124281992 CGGGTGCTGCCTG-CTTCCCTGCTCTGAGTGCCTTTGGTTAAATTTCTAGAGGAAGTGAATAAG-CTTTTCTATATTTCTGTCTGTGTGAGTCTTCCAGATAGTTTG--------------------------GGAGCAGGTGGCCAGA- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 431170 148 - 9212255 CGAGTGCTGCCTG-CTTCCCTGCTCTGAGTGCCTTTGGTTAAATTTCTAGAGGAAGTGAATAAG-CTTTTCCATATTTCTGTCTGTATGAGTCTTCCAGATAGTTTGCTTCTCTGGAGGAACCTGCAGTGGTCGCAGCAGGTGGCGGGAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2846450 148 + 4466143 CGAGTGCTGCCTG-CTTCCCTACTCTGAGTGCCTTTGGTTAAATTTCTAGAGGAAGCGAATAAG-CTTTTCCGTATTTCTGTCTGTATGAGTCTTCCAGATAGTTTGCTTCTCTAGAGGAACACGCAGTGGTCGGAGCAGGTGGCGGGAC i cebCap1.NW_016107484v1 C 0 I 20 s aotNan1.NW_018491581v1 1552122 148 + 5364348 TGAGTGCTGCCTG-CTTCCCTGCTCTGAGTGCCTTGGGTTAAATTTCTAGAGGAAGTGAATAAG-CTTTTCCATATTTCTGTCTGTATGAGTCTTCCAGATAGTTTGCTTCTCTAGAGGAACACGCAGTGGTCGGAGCAGGTGGCGGGAC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4271290 142 + 7922563 TGAGTGTCACCTG-TT---CTACATTGAGTATTTTTGGTTAGAT---TAGAGGCAGTGAAGTTG-CTTTGTCATGTTTCTGTCTGTATGGGTTTCCCAAATTGTTTGCTTTTGTAGAGAAACAGGCAATGGTCAGAGCATCTGGTGGTAC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124794450 95 + 151834684 -------------------------TGAGAGCCTC-ACTCAGGT-----GCAGAAATGAATGGTCCTTTTCCTTGTTCCTGCCGGTGTGGGTT-----GGTGGCCTG-------------------GGTGACATGACCACTTACTGCTAC i mm10.chr5 C 0 C 0 s canFam3.chr26 33135424 141 - 38964690 TGAGTGTCACCTGCTTTTCCCACTCAGAGTGCTTTTGCGGAGGATTTTAGAAGACGTGATCTTG-CTTTTCCACGTGTATGCCTGTGTGGGTTTTCCAGCTCCTTTGTTTCTGTAGA--------CAATGGGCAGTGCCCCTGGTGTGTC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 813276 134 - 1116856 TGCGTGT-ACCTG-TTTTCCTGCTCAGGGTGTTTTTGGTTAGGCTTTTGAAGGAAGTGCCCTTG-CTTCCACATGTTTATGCTCAGATGGGTTTTCCAACTT-TGTGCGTA-GTAGAGAAAC-----------AGAGCCCCCAGTGGTAC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449583 239 - 31815103 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I a score=166218.000000 s hg38.chr12_KI270834v1_alt 41767 19 + 119498 ACCCAGGAGCGGTTCACAT s panTro5.chr12 127327803 19 + 137163284 ACCCAGGAGCAGTTCACAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125678636 19 + 135337776 ACCCAGGAGCAGTTCACAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8192014 19 - 8369578 ACCCAGGAGCAGTTCACAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97840094 19 + 106955855 CCCCAGGAGCAGTTCAAAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123964967 19 + 133663169 CCCCAGAAGCAGTTCAAAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128212339 19 + 137757926 CCCCAGAAGCAGTTTAAAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10612235 19 - 16319837 CCCCAGAAGCAGTTTAAAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12234681 19 + 20526591 CCCCAGAAGCCGTTCAAAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119207613 19 + 128539186 CCCCAGAAGCAGTTCAAAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 527772 19 + 6255621 CCCCAGAAGCCGTTCAAAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4583277 19 - 8658521 CCCCAGAAGCAGTTCAAAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114788482 19 + 124281992 CCCCAGGAGCAGTTAGCAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 431318 19 - 9212255 CCCCAGGAGCAGCTAGCGC i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1552270 19 + 5364348 CCCCAGGAGCAGTTAGCAC i aotNan1.NW_018491581v1 C 0 I 1716 s otoGar3.GL873618 4271432 19 + 7922563 CCTCAGGAGAAGTTCAAGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124794545 16 + 151834684 ATTCAGGA---CTTGAAGT i mm10.chr5 C 0 C 0 s canFam3.chr26 33135565 15 - 38964690 -CTCAGAA---GTTCCAGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 813410 19 - 1116856 CCTTGGGAGAAGTTCAAAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449583 239 - 31815103 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e cebCap1.NW_016107484v1 2846598 20 + 4466143 I a score=23142.000000 s hg38.chr12_KI270834v1_alt 41786 4 + 119498 GCAT s panTro5.chr12 127327822 4 + 137163284 GCAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125678655 4 + 135337776 GCAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8192033 4 - 8369578 GCAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97840113 4 + 106955855 GCAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123964986 4 + 133663169 GCAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128212358 4 + 137757926 GCAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10612254 4 - 16319837 GCAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12234700 4 + 20526591 GCAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119207632 4 + 128539186 GCAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 527791 4 + 6255621 GCAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4583296 4 - 8658521 GCAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114788501 2 + 124281992 GC-- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 431337 2 - 9212255 GC-- i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1554005 2 + 5364348 GC-- i aotNan1.NW_018491581v1 I 1716 C 0 s otoGar3.GL873618 4271451 4 + 7922563 GCAT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124794561 4 + 151834684 GTGT i mm10.chr5 C 0 C 0 s canFam3.chr26 33135580 4 - 38964690 GTGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 813429 4 - 1116856 GCTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449583 239 - 31815103 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e cebCap1.NW_016107484v1 2846598 20 + 4466143 I a score=685554.000000 s hg38.chr12_KI270834v1_alt 41790 69 + 119498 TGACTGCTGTGACAGAAGCCCAGGCCCT----CTGGGTGGTCTTTCTGGATGAGAGTCAAC-TTCTCTTGCCTC s panTro5.chr12 127327826 69 + 137163284 TGACTGCTGTGACAGAAGCCCAGGCCCT----CTGGGTGGTCTTTCTGGATGAGAGTCAAC-TTCTCTTGCCTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125678659 69 + 135337776 TGACTGCTGTGACAGAAGCCCAGGCCCT----CTGGGTGGTCTTTCTGGATGAGAGTCAAC-TTCTCTTGCCTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8192037 69 - 8369578 CGACTGCTGTGTCAGAAGCCCAGACCCT----CTGGGTGGTCTTTCTGGATGAGAGTCAAC-TTCTCTTGCCTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97840117 69 + 106955855 CAACGGCTGTGACAGAAGCCCAGGCCCT----CTGGGTGGTCTTTCTGGATGAGAGTCAAC-TTCTCTTGCCTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123964990 69 + 133663169 CGGCTGCTGTGGTAGAAGCCCAAGCCCT----CTGGATGGTCTTTCTGGATGACAGTCAAC-TTCTCTTGCCTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128212362 69 + 137757926 CGGCTGCTGTGGTAGAAGCCCAAGCCCT----CTGGATGGTCTTTCTGGATGACAGTCAAC-TTCTCTTGCCTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10612258 69 - 16319837 CGGCTGCTGTGGTAGAAGCCCAAGCCCT----CTGGATGGTCTTTCTGGATGACAGTCAAC-TTCTCTTGCCTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12234704 69 + 20526591 CGGCTGCTGTGGTAGAAGCCCAAGCCCT----CTGGATGGTCTTTCTGGATGACAGTCAAC-TTCTCTTGCCTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119207636 69 + 128539186 CGACTGCTGTGGTAGAAGCCCAAGCCCT----CTGGATGGTCTTTCTGGATGACAGTCAAC-TTCTCTTGCCTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 527795 69 + 6255621 CGGCTGCTGTGGTAGAAGCCCAAGCCCT----CTGGATGGTCTTTCTGGATGACAGTCAAC-TTCTCTTGCCTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4583300 69 - 8658521 CGACTGCTGTGGTAGAAGCCCAAGCCCT----CTGGATGGTCTTTCTGGATGACAGTCAAC-TTCTCTTGCCTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114788503 69 + 124281992 CGACTGCGGTGCCAGGAGTCCACGCCCT----TTGGACGGTCTTTCCAGCTGAGATGCAGC-TTTTCTCGCCAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 431339 69 - 9212255 CGACGGCGGTGGCAGGAGTTGACGCCCT----CTGGATGGTCTTTCCGGATGAGAGTCAGC-TTTTCCTGCCGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2846618 69 + 4466143 CGACTGCGGTGGCAGGAGTCCACGCCCT----CTGGAGGGTCTTTCCGGATGAGAGTCAGC-TTTCCTTGCCAC i cebCap1.NW_016107484v1 I 20 C 0 s aotNan1.NW_018491581v1 1554007 69 + 5364348 CGACTGCGGCGGCAGGAGTCCGTGCCCT----TTGGGTGGTCTTTCCGGATGAGAGGCAGC-TTTTCTTGCCAC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4271455 68 + 7922563 TGAATGCTATAGCAGAAGAACAACCCCT-----TGGATGACCTTTCTTGATGTGTCTAAAC-TTTTCTCACCTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124794565 68 + 151834684 TGCCCACTCCAGCAGG---CCAAACCCCACCCCCAGACACCACTGCTAGAGGAGGCTGCCC-CTCTAGCGCC-- i mm10.chr5 C 0 C 0 s canFam3.chr26 33135584 60 - 38964690 GAACTGCTGTAGCAGAAGC-------------CCCAGTGGCTTTTCATGTTGAGTCTAAAC-CATTATCCCCCT i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 813433 66 - 1116856 GAATTGCTG---CAGAAACCCAGGCCCT----CAGAAGGGCCTTTCCTGAAGTGTCTAAACTTTTTCTCACCT- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449583 239 - 31815103 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I a score=358387.000000 s hg38.chr12_KI270834v1_alt 41859 27 + 119498 AGCTTAGGCACT--TGCTTCCTTTGCTCT s panTro5.chr12 127327895 27 + 137163284 AGCTTAGGCACT--TGCTTCCTTTGCTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125678728 27 + 135337776 AGCTTAGGCACT--TGCTTCCTTTGCTCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8192106 27 - 8369578 AGCTTAGGCACT--TGCTTCCTTTGCTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97840186 27 + 106955855 AGCTTAGGCACT--TGCTTCCTTTGCTCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123965059 27 + 133663169 AGCGTAGGCACT--TGCTTCCTTTGCTCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128212431 27 + 137757926 AGCATAGGCACT--TGCTTCCTTTGCTCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10612327 27 - 16319837 AGCATAGGCACT--TGCTTCCTTTGCTCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12234773 27 + 20526591 AGCGTAGGCACT--TGCTTCCTTTGCTCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119207705 27 + 128539186 AGCGTAGGCACT--TGCTTCCTTTGCTCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 527864 27 + 6255621 AGCGTAGGCACT--TGCTTCCTTTGCTCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4583369 27 - 8658521 AGCGCAGGCACT--TGCTTCCTTTGCTCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114788572 27 + 124281992 AGCCGAGGCACT--TGCTTCCTTCCCTCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 431408 27 - 9212255 AGCCGAGGCGCT--TGCTTCCGCCCCTCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2846687 27 + 4466143 AGCCGAGGCACT--TGCTTCCTTCCCTCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1554076 27 + 5364348 AGCCGAGACACT--CGCTTCCTTCCCTCC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9449822 27 - 31815103 AGCTTAGGTACT--TGCTTCCTTTGCTCT i micMur3.chr21 I 239 I 741 s otoGar3.GL873618 4271523 27 + 7922563 AGTTTAGGCACT--TGCTTCCTTTGCTCT i otoGar3.GL873618 C 0 I 11 s mm10.chr5 124794633 28 + 151834684 ATTTTGGACCCTTATGCTTCAGTTCTGC- i mm10.chr5 C 0 C 0 s canFam3.chr26 33135646 27 - 38964690 GACTTAGGCATT--TGATTTCTTCCCTCT i canFam3.chr26 I 2 I 64 s dasNov3.JH568189 813499 27 - 1116856 GACTTAGGCACT--TGCTTCTTTTTGCTT i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I a score=613014.000000 s hg38.chr12_KI270834v1_alt 41886 62 + 119498 TTAAACTTTTCACATTCTGCATGAC-TTT--GAGTTTCTTCTTCTGT----GGGCTTCCCTATC-TGTCT s panTro5.chr12 127327922 62 + 137163284 TTAAACTTTTCACATTCTGCATGAC-TTT--GAGTTTCTTCTCCTGT----GGGCTTCCCTATC-TGTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125678755 63 + 135337776 TTAAACTTTTCACATTCTGCATGACTTTT--GAGTTTCTTCTCCTGT----GGGCTTCCCTATC-TGTCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8192133 62 - 8369578 TTAAACTTTTCACATTCTGCATGAC-TTT--GAGTTTCTTCTCCTGT----GGGCTTCCCTATC-TGTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97840213 62 + 106955855 TTAAACTGTTCACATTCTGCATGGC-TTC--GAGTTTCTTCTCCTGT----GGGCTTCCCTATC-TGTCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123965086 61 + 133663169 TTAAACTTGTCACATTCTGCATGAC-TTT--GAGTTTCTTCTCCTGT----GGGCTTCCCTATC-TGT-T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128212458 61 + 137757926 TTAAACTTGTCACATTCTGCATGAC-TTT--GAGTTTCTTCTCCTGT----GGGCTTCCCTATC-TGT-T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10612354 61 - 16319837 TTAAACTTGTCACATTCTGCATGAC-TTT--GAGTTTCTTCTCCTGT----GGGCTTCCCTATC-TGT-T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12234800 61 + 20526591 TTAAACTTCTCACATTCTGCATGAC-TTT--GAGTTTCTTCTCCTGT----GGGCTTCCCTATC-TGT-T i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119207732 61 + 128539186 TTAAACTTCTCACTTACTGCATGAC-TTT--GAGTTTCTTCTCCTGT----GGGCTTCCCTATC-TGT-T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 527891 61 + 6255621 TTAAACTTCTCACATTCTGCATGAC-TTT--GAGTATCTTCTCCTGT----GGGCTTCCCTATC-TGT-T i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4583396 61 - 8658521 TGAAACTTCTCACATTCTGCATGAC-TTT--GAGTTTCTTCTCCTGT----GGGCTTCCCTATC-TGT-T i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114788599 58 + 124281992 TTAAGCGTTTCACATTCTGCATGAC-TTG--GAGTTTCTTCTCCTTT----GGGCTTCTCTGTC-----T i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 431435 57 - 9212255 TTAAGCGTTTCACATTCTGCATGAC-TTG--GACTTTCTTCTCC-TT----GGGCTTCTCTGTG-----T i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2846714 57 + 4466143 TTAAGCGTTTCACATTCTGCAGGAC-TTG--GAGTTTCTTCTCC-TT----GGGCTTCTCTGTC-----T i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1554103 58 + 5364348 TTAAGCATTTCACGTTCTGCATGAC-CTG--GAGTTTCTTCTCCTTT----GGGCTTTTCTGTC-----T i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4271561 62 + 7922563 TTAAATGTTTCATGTTCTGCATGAT-CTT--GAGTTTCTTCTCCTTT----AGGCTTTCATTTTTTGT-T i otoGar3.GL873618 I 11 C 0 s mm10.chr5 124794661 66 + 151834684 CTGAGCTCTCCATGTTTAACACACT-CCA--GGGTTCCTGGTTTTATCTCGGGGCTTCCCCATC-TGTCT i mm10.chr5 C 0 I 1115 s canFam3.chr26 33135737 49 - 38964690 TAAAATTTTTCACACTGTGCATGAT-TTT--GAGTTTCTTCTCCACC----TATTT-------------- i canFam3.chr26 I 64 C 0 s dasNov3.JH568189 813526 60 - 1116856 ---AACATTTCAAATTCTGCAGCCT-TTTTGAATTTTTTTCTGCTTT----GGGCTTTTCTCTTGTGT-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I a score=3064323.000000 s hg38.chr12_KI270834v1_alt 41948 276 + 119498 TTTTAA-TTTTTATT--TTTAACCATCTATCTCCATTTTCACCATATCATTCATCTGCTGTATTCCTGAGTATTTGCACAGTAGACAATCAAGTGTGGATTTGTAAATCGTTCATAGGAAATCATACAATTAACA-TTTTATGTTTT-----------TGCAC----------------------AAAAATGTGCATCTTCAATGAATCATACATGATGAAAAAGATGCATTCTCCAAGGTCTATATGCAATGGTAGGACCCTTCTTTATCCATCTCTTATTGCTATTCGAGCATGGCTTGGAATGTAGATG----------G s panTro5.chr12 127327984 276 + 137163284 TTTTAA-TTTTTATT--TTTAACCATCTATCTCCATTTTCACCATATCATTCATCTGCTGTATTCCTGAGTATTTGCACAGTAGACAATCAAGTGTGGATTTGTAAATCGTTCATAGGAAATCATACAATTAACA-TTTTATGTTTT-----------TGCAC----------------------AAAAATGTGCATCTTCAATGAATCATACATGATGAAAAAGATGCATTCTCCAAGGTCTATATGCAATGGTAGGACCCTTCTTTGTCCATCTCTTATTGCTATTCCAGCACGGCTTGGAATATAGATG----------G i panTro5.chr12 C 0 C 0 s panPan2.chr12 125678818 275 + 135337776 TTTTAA--TTTTATT--TTTAACCATCTATCTCCATTTTCACCATATCATTCATCTGCTGTATTCCTGAGTATTTGCACAGTAGACAATCAAGTGTGGATTTGTAAATCGTTCATAGGAAATCATACAATTAACA-TTTTATGTTTT-----------TGCAC----------------------AAAAATGTGCATCTTCAATGAATCATACATGATGAAAAAGATGCATTCTCCAAGGTCTGTATGCAATGGTAGGACCCTTCTTTGTCCATCTCTTATTGCTATTCCAGCACGGCTTGGAATATAGATG----------G i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8192195 284 - 8369578 TTTTAA-TTTTTATT--TTTAACCATCTATCTCCATTTCCACCATATCATTCATCTGCTGTATTCCTGAGTATTTGCACGGTAGACAATCAAGTGTGGATTTGTAAATCGTTCATAGGAAATCGTACAATTAACA-TTTTATGTTTT-----------TGCAC----------------------AAAAATGTGCATCTTCAATGAATCATACATGATG-AAAAGATGCATTCTCCAAGGTCTATATGCAATGGTAGGACCCTTCTTTGTCCATCTCTTATTGCTATTCGAGCATGGCTTGGAATATAGATG-GCTTTTGAAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97840275 276 + 106955855 TTTTAA-TTTTTATT--TTTAACCACCTCCCTCCATTTCCACCCTATCATTTATCTGCTGTATTCCTGAGTATTTGCACAGTAGACAATCAAGTGTGGATTTGTAAATCTTTCATAGGAAATCATACAATTAACA-TTTTATGTTTT-----------TGCAC----------------------AAAAATGTGCATCTTCAGTGAATCATACATGATGAAAAAGATGCATTCTCCAAGGTCTATATGCAGTGCTAGGACCCTTCTTTGTCCATCTGTTATTGCTATTTGAGCATGGCTTGGAATATAGATG----------G i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123965147 276 + 133663169 TTTTAA-TTTTTATT--TTTAACCACCTCACTCCATTTCCACCGTATAATTCATCTGCTGTATTCCTGACTATTTGCACAGTAGACAATCAAGAGTGGATTTGTAAATCGTTCATAGGAAATCATAAAATTAACA-TTTTATGTTTT-----------TGCAC----------------------AAAACTGTGCATCTTCAGTGAATCATCCATGATGAAAAAGATGCATTCTCCAAGGTCTACATGCAGTGCTAGGACTCTTCTTTGTCCATCTCTTATTGCTATTTGAGCATGGCTTGAAATATAGATG----------G i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128212519 276 + 137757926 TTTTAA-TTTTTATT--TTTAACCACCTCACTCCATTTCCACCGTATAATTCATCTGCTGTATTCCTGACTATTTGCACAGTAGACAATCAAGAGTGGATTTGTAAATCGTTCATAGGAAATCATAAAATTAACA-TTTTATGTTTT-----------TGCAC----------------------AAAAATGTGCATCTTCAGTGAATCATCCATGATGAAAAAGATGCATTCTCCAAGGTCTACATGCAGTGCTAGGACTCTTCTTTGTCCATCTCTTATTGCTATTTGAGCATGGCTTGAAATATAGATG----------G i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10612415 276 - 16319837 TTTTAA-TTTTTATT--TTTAACCACCTCACTCCATTTCCACCGTATAATTCATCTGCTGTATTCCTGACTATTTGCACAGTAGACAATCAAGAGTGGATTTGTAAATCGTTCATAGGAAATCATAAAATTAACA-TTTTATGTTTT-----------TGCAC----------------------AAAAATGTGCATCTTCAGTGAATCATCCATGATGAAAAAGATGCATTCTCCAAGGTCTACATGCAGTGCTAGGACTCTTCTTTGTCCATCTCTTATTGCTATTTGAGCATGGCTTCAAATATAGATG----------G i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12234861 276 + 20526591 TTTTAA-TTTTTATT--TTTAACCACCTCACTCCATTTCCACCATATAATTCATCTGCTGTATTCCTGACTATTTGCACAGTAGACAATCAAGAGTGGATTTGTAAATCGTTCATAGGAAATCATAAAATTAACA-TTTTATGTTTT-----------TGCAC----------------------AAAAATGTGCATCTTCAGTGAATCATCCATGATGAAAAAGATGCATTCTCCAAGGTCTACATGCAGTGCTAGGACTCTTCTTTGTCCATCTCTTATTGCTATTTGAGCATGGCTTGAAATACAGATG----------G i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119207793 276 + 128539186 TTTTAA-TTTTTATT--TTTAACCACCTCTCTCCATTTCCACCATATAATTCATCTGCTGTATTCCTGAGTATTTGCACAGTAGACAATCAAGAGTGGATTTGTAAATCGTTCAGAGGAAATAATAAAATTAACA-TTTTATGTTTT-----------TGCAC----------------------AAAACTGTGCATCTTCAGTGAATCATCCATGATGAAAAAGATGCATTCTCCAAGGTCTACATGCAGTGCTGGGACTCTTCTTTGTCCATCTCTTATTGCTATTTGAGCACGGCTTGAAATATAGATG----------G i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 527952 276 + 6255621 TTTTAA-TTTTTATT--TTTAACCACCTCACTCCATTTCCACCATATAATTCATCTGCTGTATTCCTGACTATTTGCACAGTAGACAATCAAGAGTGGATTTGTAAATCGTTCATAGGAAATCATAAAATTAACA-TTTTATGTTTT-----------TGCAC----------------------AAAAATGTACATCTTCAGTGAATCATCCATGATGAAAAAGATGCATTCTCCAAGGTCTACATGCAGTGCTAGGACTCTTCTTTGTCCATCTCTTATTGCTATTTGAGCATGGCTTGAAATATAGATG----------G i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4583457 276 - 8658521 TTTTAA-TTTTTATT--TTTAACCACCTGTCTCCATTTCCACCATATAATTCATCTGCTGTATTCCTGAGTATTTGCACAGTAGACAATCAAGAGTGGATTTGTAAATCATTCATAGGAAATCATAAAATTAACA-TTTTATGTTTT-----------TGCAC----------------------AAAAATGTGCATCTTCAGTGAATCATACAGGATGAAAAAGATGCATTCTCCAAGGTCTGTATGCAGTGCTAGGACTCTTCTTTGTCCATGTCTTATTGCTATTTGAGCATGGCTTGAAATGTAGATG----------G i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114788657 274 + 124281992 CTTTTA-TTTTTATT--TTTAGCCACCTCTCTCAATTTCCACCATGTAATCCATCTGCTGTATTCCTGAGCATCTGCACGGTAGAAAATCAAGTGTGGATTTGTAAATCGTTCATAGGAAATCATAAAA-TAACA-TTTTATGTTTT-----------TGCAC----------------------AAAAATGTGCGTCTTCAAAGAATCATACATGATGAAAAGGATGCATTCTCCAAGG-CTGTATATGGGGCCAGGGCCCTTCTTTGTCCATCTCTTATTGATATTTGAGCATGGCTTGGAATATAGATGC---------- i calJac3.chr9 C 0 I 305 s saiBol1.JH378194 431492 275 - 9212255 CTTTTATTTTTTAAT--TTTAGCGAACTCTCTCAATTTCCACCGTGTAATCCATCTGCTGTATTCCTGAGTATCCGCACAGTAGAAAATCAAGTGTGGATTTGTAAATCGTTCATAGGAAATCATGAAATTAACA-TTTTATGTTTT-----------TGCAC----------------------GAAAATGTGCATCTTCAAGGAATCGTGCCTGATGAAAAGGATGCGCTCTCCAAGG-CCGTGTACGGGGCTAGGGCCGCTCTTTGTCCATCTCTTATTGACATTTGAGCATGGCTTGGAATATGGAGG----------- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2846771 272 + 4466143 C--TTA-TTTTTATT--TTTAGCCAACTCTCTCAATTTCCACCATGTAATCCATCTGCTGTATTCCACAGTATCTGCACAGTAGAAAATCAAGTGTGGATTTGTAAATCGTTCATAGGAAATCATAAAATTAACA-TTTTATGTTTT-----------TGCAC----------------------AAAAATGTGCATCTTCAAAGAATCATACATGATGAAAAGGATGCATTCTCCAAGG-CTGTATACGGGGCTAGGGCCGTTCTTTGTCCATCTCTTATTGATGTTTGAGCATGGCTTGGAATATAGATG----------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1554161 274 + 5364348 CTTTTA-TTTTTATT--TTTAGCCACCTCTCTCAACTTCCACCATGTGATCCATCTGCTGTATTCCTGAGTATCTGCACAGTAGAAAATCAAGTGTGGATTTGTAAATCGTTCATAGGAAATCATAAAATTAACA-TTTTATGTTTT-----------TGCAC----------------------AAAAATGTGCATCTTCAAAGAATCATACATGATGAAAAGGATGCGTTCTCCGAGG-CTGTATACAGGGCTAGGGCCCTTCTTTGTCCATCTCTTACTGATATTTGAGCATGGCTTGGAATATAGATG----------- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4271623 272 + 7922563 TGTTTG-TTTTT--T--TTAAGTCATCTCTTTAAAGTTCTACAGTTTAATTCATCAGCTGTGTTACTGGGTATTTGCTCAGTAGAAAATCCAATATGGGCTTATAGGTTGTTCATAGGAAACCACCAAATTAACCTTTTTAAAGTTT-----------TGCAC----------------------AGAAACATGCATCTTCAAAGAGCTAGATAGAATAAAAGGCATGCATTCTCTGAGGACTGTGTGTAGCACTGGAATCCTTTTTTGTTCATCACGTC---ATATCTTAGTATGCTTTGGCAGGTAGGTG----------A i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33135786 259 - 38964690 -------------TT--TTAAACCACCTCTCTAAATTTCCACAATTTAATTCACCTGCAGTATTCCTGAGTATTTGCACAGTAGGCGATCAAGTGTGGATCTGT-GGTCATTCTTAGGAGATCATCATATTAAGG-TTTTAAGTTTG-----------TGTGT----------------------GAAAAAACGCATGCTCCAAGAGCTATATTCAGTGAAAATGTGCCTTTTTTCAAGAACTCAATGTAACAGCAGGATCTGTCTTTGTT----TCCTGATGATGTTTGAATATGACTTGGCGAGTAGACA----------T i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 813586 303 - 1116856 TTTTGT-TGTTTATTTGTTAAGTCATTGCCTTAAAGTTCCACAACTTAATTATTCTGCTGTATTTCTGAGTATTT--ACAGTTGACTATCAAGTATGGATTTGTAGATCTTTCATAGGCAATCATCATATTAAGG-TTTTAAGTTTGTCCCTGAAAAATGTACATTCTCAAGGGACTCTACAATGAAAAGTGTGCATTTTCTAAAGATTGTATATGAAGAAAAATATGCATTCTTAAAGGAATGTATGTATT--TGAGA----TCTCTGTTCATCTCTTACTGGTGTTTGAATATGGCTTGGCAGATAGACA----------C i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I a score=586919.000000 s hg38.chr12_KI270834v1_alt 42224 47 + 119498 -CTTTTGA---AGTTGTATTTTATACTCCTTACCT--GGTG-------------------------GTCTTTTT---------------AAAG s panTro5.chr12 127328260 47 + 137163284 -CTTCTGA---AGTTGTATTTTATACTCCTTACCT--GGTG-------------------------GTCTTTTT---------------AAAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125679093 47 + 135337776 -CTTTTGA---AGTTGTATTTTATACTCCTTACCT--GGTG-------------------------GTCTTTTT---------------AAAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8192479 47 - 8369578 -CTTTTGA---AGTTGTATTTTATACTCCTTACCT--GGTG-------------------------GTCTTTTT---------------AAAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97840551 47 + 106955855 -CTTTTGA---AGTTGTATTTTATACTCCTTACCT--GGTG-------------------------GTCTTTTT---------------AAAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123965423 47 + 133663169 -CTTTTGA---AGTTGTATTTTATACTCCTTACCT--GGTG-------------------------GTCTTTTT---------------AAAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128212795 47 + 137757926 -CTTTTGA---AGTTGTATTTTATACTCCTTACCT--GGTG-------------------------GTCTTTTT---------------AAAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10612691 47 - 16319837 -CTTTTGA---AGTTGTATTTTATACTCCTTACCT--GGTG-------------------------GTCTTTTT---------------AAAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12235137 47 + 20526591 -CTTTTGA---AGTTGTATTTTATACTCCTTACCT--GGTG-------------------------GTCTTTTT---------------AAAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119208069 47 + 128539186 -CTTTTGA---AGTTGTATTTTATACTCCTTACCT--GGTG-------------------------GTCTTTTT---------------AAAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 528228 47 + 6255621 -CTTTTGA---AGTTGTATTTTATACTCCTTACCT--GGTG-------------------------GTCTTTTT---------------AAAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4583733 47 - 8658521 -CTTTTGA---AGTTGTATTTTATACTCCTTACCT--GGTG-------------------------GTCTTTTT---------------AAAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114789236 47 + 124281992 -CTTTTGA---AGTTGCATTTTATAATCCTTACCT--GGTG-------------------------GTGTTTTT---------------AAAG i calJac3.chr9 I 305 C 0 s saiBol1.JH378194 431767 47 - 9212255 -CTTTTGA---AGTTGCATTTTATAATCCTTACCT--GGCG-------------------------GTCTTTTT---------------AAAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2847043 47 + 4466143 -CTTTTGA---AGTTGCATTTTATAATCCTTACCT--GGTG-------------------------GTCTTTTT---------------AAAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1554435 47 + 5364348 -CTTTTGA---AGTTGCATTTTATAATCCTTACCT--GGTG-------------------------GTCTTTTT---------------AAAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4271895 87 + 7922563 -CTTTTTA---AGTTGCATTTTAAAATTTTTACCT--GGGGTGTTCCTCCTTTTTTCTTTCTTTCtttctttttttttttttttgagacaaag i otoGar3.GL873618 C 0 I 257 s canFam3.chr26 33136045 49 - 38964690 -CTTTCTA---AGTCATATTCTATCATCATTACCTGGGGTG-------------------------TTCTTTTC---------------AGAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 813889 52 - 1116856 ATTTGTAAGTTAGTTGTGTTCTACAGTCCTTACCT-GGGTG-------------------------TACTTTCT---------------AAAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I a score=3509323.000000 s hg38.chr12_KI270834v1_alt 42271 334 + 119498 TTTAAAA--TGAAATGGCCTCCGGTCTTTCTAATGGACAGTCATGGAGCAAATCAAAGATGTTTTTCAGGTCCCTGCTTTATTCGGTGGGAGTCTGAGTGCACTTTTCCAG-AACTG-AAATCTCCCTTTGGGGAGTGCTTTTCAGCTCCGCCAGCCACGCTGGCTGTGCGTTGCTGCCATCTGCAATTCCCTCACTCGGAGACAATGTTGG-CCTGCTTCCCTGGCTTG----TCT----CCCTCATT------TGCCCTCATCTTGGGGGCCTGAATGGCCCTGTGGGCATCCCATTTCCAGACAC---C------TGCTCACAGCTTCAGCCCTGCAGGCCCTCGAGCATACGCTTGAC s panTro5.chr12 127328307 334 + 137163284 TTTAAAA--TGAAATGACCCCCAGTCTTTCTAATGGACAGTCATGGAGCAAATCAAAGATGTTTTTCAAGTCCCTGCTTTATTCAGTGGGAGTCTGAGTGCACTTTTCCAG-AACTG-AAGTCTCCCTTTGGGGAGTGCTTTTCAGCTCCGCCAGCCACGCTGGCTGTGCGTTGCTGCCATCTGCAATTCCCTCACTCGGAGACAATGTTGG-CCTGCTTCCCTGGCTTG----TCT----CCCTCATT------TGCCCTCATCTTGGGGGCCTGAATGGCCCTGTGGGCATCCCATTTCCAGACAC---C------TGCTCACAGCTTCAGCCCTGTAGGCCCTCGAGCATACGCTCGAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125679140 334 + 135337776 TTTAAAA--TGAAATGACCCCCAGTCTTTCTAATGGACAGTCATGGAGCAAATCAAAGATGTTTTTCAAGTCCCTGCTTTATTCAGTGGGAGTCTGAGTGCACTTTTCCAG-AACTG-AAGTCTCCCTTTGGGGAGTGCTTTTCAGCTCCGCCAGCCACGCTGGCTGTGCGTTGCTGCCATCTGCAATTCCCTCACCCGGAGACAATGTTGG-CCTGCTTCCCTGGCTTG----TCT----CCCTCATT------TGCCCTCATCTTGGGGGCCTGAATGGCCCTGTGGGCATCCCATTTCCAGACAC---C------TGCTCACAGCTTCAGCCCTGTAGGCCCTCGAGCATACGCTCGAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8192526 332 - 8369578 TTTACAA--TGAAATGACCTCCGGTCTTTCTAATGGACAGTCATGGAGCAAATCAAAGATG-TTTTCAGGTCCCTGCTTTATTCAGTGGGAGTCTGAGTGCACTTTTCCAG-AACTG-AAGTCTCCCTTTGGGGAGTGCTTTTCAGCTCCGCCAGCCACGCTGGCTGTGTGTTGCTGCCATCTGCAATTCCCTCACTCGGAGACAATGTTGG-CCTGCTTCCCTGGCTTG----TCT----CCCTCATT------TGCCCTCATCTTGGGGGCCTGAATGGCCCTGTGGGCATCCCATTTCCAGACAC---C------TGCTCACAGCTTCAGCCCTGTAGG-CCTCGAGCATACGCTCGAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97840598 334 + 106955855 TTTAAAA--TGAAATGACCTCCGGTCTTTCTAATGGACAGTCATGGAGCGAATCAAAGATGTTTTTCAAGTCCCTGCTTTACTCGGTGGGGGTCTGAGTGCGCTTTTCCAG-AACTG-AAGTCTCCCTCGAGGGAGTGCTTTTCTGCTCCGCCGGCCACGCTGGCTGTGCGTTGCTGCCATCTGCAATTCCCTCACTCGGAGACGATGTTGG-CCTGCTTCCCTGGCTTG----TCT----CCCTCATT------TGCCCTCGTCTTGGGGGCCTGAATGGCCCTGTAGGCGTCCCATTTCCAGACAC---C------TGCTCACAGCTTCAGCCCTCCAGGCCCTTGAGCACACCCTCGAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123965470 334 + 133663169 TTTAAAA--TGAAATGACCTCTGGTCTTTCTAATGGAGAGTCATGGAGCAAATCAAAGATGTTTTACAAGTCCCTGCTTTATTCGGCGGGAGTCTGAGTGCAGTCTTCCAG-AGCTG-AAGTCTCCCTTGAGGGAGTGCTTTTCTGCTCCGCCGGCCACGCTGGCTGTGCACTGCTGCCGCCTACAATTCCCTTACTCGGAGACGATGTTGG-CCTGCTTCCCTGGCTTG----CCT----CCCTCATT------TGCCCTCATCTTGGGGGCCTGAATGACCCGGTGGGCATCCCATTTCCTGACAC---C------TGCTCACAACTCCAGCCCTCCAGGCCCTCGAGCACACCCTTGAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128212842 334 + 137757926 CTTAAAA--TGAAATGACCTCTGGTCTTTCTAATGGAGAGTCATGGAGCAAATCAAAGATGTTTTACAAGTCCCTGCTTTATTCGGCGGGAGTCTGAGTGCACTCTTCCAG-AGCTG-AAGTCTCCTTTGAGGGAGTGCTTTTCTGCTCCGCCGGCCACGCTGGCTGTGCACTGCTGCCGCCTACAATTCCCTTACTCGGAGACGATGTTGG-CCTGCTTCCCTGGCTTG----CCT----CCCTCATT------TGCCCTCATCTTGGGGGCCTGAATGGCCCGGTGGGCATCCCATTTCCTGACAC---C------TGCTCACAACTCCAGCCCTCCAGGCCCTCGAGCACAACCTTGAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10612738 334 - 16319837 TTTAAAA--TGAAATGACCTCTGGTCTTTCTAATGGAGAGTCATGGAGCAAATCAAAGATGTTTTACAAGTCCCTGCTTTATTTGGCGGGAGTCTGAGTGCACTCTTCCAG-AGCCG-AAGTCTCCTTTGAGGGAGTGCTTTTCTGCTCCGCCGGCCACGCTGGCTGTGCACTGCTGCCGCCTACAATTCCCTTACTCGGAGACGATGTTGG-CCTGCTTCCCTGGCTTG----CCT----CCCTCATT------TGCCCTCATCTTGGGGGCCTGAATGGCCCGGTGGGCATCCCATTTCCTGACAC---C------TGCTCACAACTCCAGCCCTCCAGGCCCTCGAGCACACCCTTGAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12235184 334 + 20526591 TTTAAAA--TGAAATGACCTCTGGTCTTTCTAATGGAGAGTCATGGAGCAAATCAAAGATGTTTTACAAGTCCCTGCTTTATTCGGTGGGAGTCTGAGTGCACTCTTCCAG-AGCTG-AAATCTCCCTTGAGGGAGTGCTTTTCTGCTCTGCCGGCCACGCTGGCTGTGCGCTGCTGCCGTCTACAATTCCCTTACCCGGAGACGATGTTGG-CCTGCTTCCCTGGCTTG----CCT----CCCTTATT------TGCCCTCATCTTGGGGGCCTGAATGGCCCGGTGGGCATCCCATTTCCTGACAC---C------TGCTCACAACTCCAGCCCTCCAGGCCCTCGAGCACACCCTTGAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119208116 334 + 128539186 TTTAAAA--TGAAATGACCTGTAGTCTTTCTAATGGAGAGTCATGGAGCAAATCAAAGATGTTTTACAAGTGCCTGCTTTATTCGATGGGAGTCTGAGTGCACTTTTCCAG-AGCTG-AAGTCTCCCTTGAGGGAGTGCTTTTCTGCTCCTCTGGCCACGCTGGCTGTGTGCTGCTGCCGCCTACAATTCCCTTACTCGGAGACGATGTTGG-CCTGCTTCCCTAGCTTG----CCT----CCCTCATT------TGCCCTCATCTTGGGGGCCTGAATGGCCCAGTGGGCATCCCATTTCCTGACAC---C------TGCTCACAACTCCAGCCCTCCAGGCCCTCGAGCACACCCTTGAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 528275 334 + 6255621 TTTAAAA--TGAAATGACCTCTGGTCTTTCTAATGGAGAGTCATGGAGCAAATCAAAGATGTTTTACAAGTCCCTGCTTTATTCGGTGGGAGTCTGAGTGCACTCTTCCAG-AGCTG-AAGTCTCCCTTGAGGGAGTGCTTTTCTGCTCCGCCGGCCACGCTGGCTGTGCACTGCTGCCGTCTACAATTCCCTTACTCGGAGATGATGTTGG-CCTGCTTCCCTGGCTTG----CCT----CCCTCATT------TGCCCTCATCTTGGGGGCCTGAATGGCCCGGTGGGCATCCCATTTCCTGACAC---C------TGCTCACAACTCCAGCCCTCCAGGCCCTCGAGCACACCCTTGAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4583780 334 - 8658521 TTTAAAA--TGAAATGACCTCTGGTCTTTCTAATGGAGAGTCATGGAGCAAATCAAAGATGTTTTACAAGTCCCTGCTTTATTTGGTGGGAGTCTGAGTGCACTTTTCCAG-AGCTG-AAGTCTCCCTTGAGGGAATGCTTTTCTGCTCCGCCGGCCACGCTGGCTGTGTGCTGCTGCCGCCTACAATTCCCTTACTCGGAGACGATGTTGG-CCTGCTTCCCTGGCTTG----CCT----CCCTCATT------TGCCCTCATCTTGGGGGCCTGAATGGCCCAGTGGGCATCCCATTTCCTGACAC---C------TGCTCACAACTCCAGCCCTCCAGGTCCTCGAGCACACCCTCGAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114789283 329 + 124281992 TTTAAAA--TAAAATGACCTCCGGTCTTTCTGTTGGAGAGTTATGGAGTAATTAGAAGATGTTG-TAAAGTCCCTGCTCTATTGGTTGGCAGTCCAACTGTTCTTTTTCAG-AACCA-ACGTCTCCCTTGAAGGAGCGCTCTCCAGCTCCGCCGGCCATGCTGGCTGAGCGTTGCTGCCATCTGCATTTCCCTCACTC-GCGATGA---TGA-TCTGCTTCCCCGGCCTG----CCT----CCCTCAAT------TGCCCTCATCTTGGGGACCTGAATGACCCTCTGAGCCTCCCATTTCCAGACAC---C------TGTTCACAGGTCCAGCCCTACAGGCCCTCAAGCATGCCCTAGAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 431814 289 - 9212255 TTTAAAA--TAAAATGACCTCCAGTCTTTCCGATGGAGAGTTATGGAGTAATCAGAAGGTGT---ACACGTCCCTGCTGTATTCGCCGGCCGTCCGACTGCTCTTTTTCAG-AACCG-ACGTCTCCCCTGAAGGAGTGCTGTCCAGC------------------------------------------CCCTCACTCGGCGATGACGTTGG-CCTGCTTCCCCGGCCTG----CCT----CCCTCATT------TGCCCTCATCTTGGGGACCTGAATGACCCTCTGAGCCTCCCACTTCCAGACCC---C------TGTTCACAGGTCCAGCCCTCCAGGCCCTCAAGCCTACCCTAGAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2847090 334 + 4466143 TTTAAAA--TAAAATGACCTCCAGTCTTGCTGATGGAGAGTTATGGAGTAATTAGAAGATGTTGTACAAGTCCCTGCTGTGTTCGCTGGCAGTCTGACTGCTCTTTTTCAG-AACCG-ACATCTCCCTTGAAGGAGTGCTCTCCAGCTCCGTCGGCCGTGCTGGCTGAGGGTTGCTGCCGTCTGCAGTTCCCTCACTTGGCGATGATGTTGG-CCTGCTTCCCCGGCCTG----CCT----CCCTCATT------TGCCCTCATCTTGGGGACCTGAATGACCCTCTGAACCTCCCATTTCCAGACAC---C------TGTTTGCAGGTCCAGCCCTCCAGGCCCTCAAGCATACCCTAGAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1554482 334 + 5364348 TTTAAAA--TAAAATGACCTCCAGTCTTTCTGATGGAGAGTTATGGAGTAATTAGAAGATGTTGTACAAGTCCCTGCTTTATTTGCTGGCAGTCTGACTGCTCTTTTTCAG-AACCG-ACGTCTCCCTTGAAGGAGCGCTCTCCAGTTCCGCCGGCCGTGCTGGCTGAGCGTTGCTGCCGTCTGCAGTTCGCTCACTCGACGATGATGTTGG-CCTGCTTCCCCGGCCTG----CCT----CCCTCATT------TGCCCTCATCTTGGGGACCTGAATGACCCTCTAAGCCTCCCATTTCTAGATAC---C------TGTTCACAGGTCCAGCCCTCCAGGCTCTCAGGCATACCCTAGAC i aotNan1.NW_018491581v1 C 0 I 10 s otoGar3.GL873618 4272239 303 + 7922563 TTTAAAGTTTAAAATGGCCTCAGTTCTTTCTAGTGGAGAGTCATTAGGCAAGTAAAAGACATTTTAATGGTCTGTGCTCTATTTGGTGGCAGTC----TGTACAGTTTCAG-AACCC-AAAGGCTCCTTTGGGGGATGCTTCCCAGTTCTGCATGCCACACTG---------------------CAGGCCCCTTA-TTAGAGACAATGTGGGCCCTGTCTCCTGGGTTTGTGTTTCA----CCCTAGTT------TGCCCTCATCCTGGGGACTCAAATGGCCCTGAGGACACCT------------A---C------TGCACACAAGCTCAGCAGCCTGTTCCTTTGAGTACATCATGGAC i otoGar3.GL873618 I 257 C 0 s canFam3.chr26 33136094 310 - 38964690 TGCAAAG--TAAAATGGCCTCAGGTCTTTCTAATGGAGCAT-GTTGAGCAAGTAAAAGATGTTTTACAAGTCCCTGCTCTTTTGGGTGGCAGTTGGCTTATGCTTTTCCAG-CGCGGCATGCCTCCTTTGGGTGAGTGCTTCCCAGCTGTGCATGCCATGCTGGCTTTGTTTGGCTGTCATCAGTGACCCCCC--------------------CCCACCTC-------GG----GGC----CCCTGGTG------TGCTCTAGTTCTGGGGACTCGAATGGCTCAGTAAACATCTTATTTCCAGATGCCTTC------TGCACTCAACTCCAGCAATG-GGTCCCTTGACCTCAGGTTAGCT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 813941 350 - 1116856 TTTGAAA--GAGAATGGTCTCTGGTCTTTCTAATGGAGAGTAATTGAGCAAAGAAATCATATTTTTAAATGCCATGCTCTTTCTGGTGGCAGTCTGATTGTTCTTTTTCAGCATCTG-AAGGCTCCTTTGAGTTTGTGCTTCCCAGCTGTGTACACCACCCTGACTTCGTGTTGCTGTCATCTGCAAACCCCTCACTTGGAGACAATGTTGG-CTCCACTCCCTGTCTTG----TCCTTAACTTTTATTTTCTTGTGCTCTTATCTTGAGGACTTGAATAGCCCTGCAGATAGCTTGTTCCCAGACAT---CTTCTTGTGCGTGCTGCTTCAGCAACTCAGTCCCT-GACCCTATCCTGGGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I a score=31400.000000 s hg38.chr12_KI270834v1_alt 42605 7 + 119498 GGTGATC-------- s panTro5.chr12 127328641 7 + 137163284 GGTGACC-------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125679474 7 + 135337776 GGTGACC-------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8192858 7 - 8369578 GGTGACC-------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97840932 7 + 106955855 GGTGACC-------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123965804 7 + 133663169 GGTGACC-------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128213176 7 + 137757926 GGTGACC-------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10613072 7 - 16319837 GGTGACC-------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12235518 7 + 20526591 GGTGACC-------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119208450 7 + 128539186 GGTGACC-------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 528609 7 + 6255621 GGTGACC-------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4584114 7 - 8658521 GGTGACC-------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114789612 5 + 124281992 --TCCCC-------- i calJac3.chr9 C 0 I 5 s saiBol1.JH378194 432103 5 - 9212255 --TCCCC-------- i saiBol1.JH378194 C 0 I 5 s cebCap1.NW_016107484v1 2847424 5 + 4466143 --TCCCC-------- i cebCap1.NW_016107484v1 C 0 I 5 s otoGar3.GL873618 4272542 4 + 7922563 ---CACC-------- i otoGar3.GL873618 C 0 I 4 s canFam3.chr26 33136404 6 - 38964690 -CTGAAC-------- i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 814291 10 - 1116856 -----CCTCACATCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e aotNan1.NW_018491581v1 1554816 10 + 5364348 I a score=3249187.000000 s hg38.chr12_KI270834v1_alt 42612 306 + 119498 TCTGGCACTG--TCATGTC--TGCAT---CACAAAT-----CCTGCTCTCCACCT--ACTCTGCCTCTGAGACTCGGGCCACATGTGTTTCTGTTTGGCCTCATGGGGATGGACACT--GTGTCGCC--CCAGTGTCTGC-TGTTGCCT--CGAGCACCCA--TACT----TGCCCCTTCCCTGCATCCTCACTTCCTTGGCTGGTGGCCT-TCACTTCAGCCACTCTTGCCTGAGACC-TCCGCATGCCTTGCCTAATTGCT---C--TGCTGAATCCCTCCGAGAAAACTCCAAGTCTGTCTTCTCTGCCTGTCTAAG---G---GCTGACAGG-----G--AGAAGACCA- s panTro5.chr12 127328648 306 + 137163284 TCTGGCACTG--TCATGTC--TGCAT---CACAAAT-----CCTGCTCTCCACCT--ACTCTGCCTCTGAGACTCGGGCCACATGTGTTTCTGTTTGGCCTCATGGGGATGGACACT--GTGTCGCC--CCAGTGTCTGC-TGTCTCCT--CGAGCACCCA--TACT----TGCCCCTTCCCTGCATCCTCACTTCCTTGGCTGGTGGCCT-TCACTTCAGCCACTCTTGCCTGAGACC-CCCGCATGCCTTGCCTAATAGTT---C--TGCTGAATCCCTCCGAGAAAACTCCAAGTCTGTCTTCTCTACCTGTCTAAG---G---GCTGACAGG-----G--AGAAGACCA- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125679481 306 + 135337776 TCTGGCACTG--TCATGTC--TGCAT---CACAAAT-----CCTGCTCTCCACCT--ACTCTGCCTCTGAGACTCGGGCCACATGTGTTTCTGTTTGGCCTCATGGGGATGGACACT--GTGTCGCC--CCAGTGTCTGC-TGTCTCCT--CGAGCACCCA--TACT----TGCCCCTTCCCTGCATCCTCACTTCCTTGGCTGGTGGCCT-TCACTTCAGCCACTCTTGCCTGAGACC-CCCGCATGCCTTGCCTAATAGTT---C--TGCTGAATCCCTCCGAGAAAACTCCAAGTCTGTCTTCTCTGCCTGTCTAAG---G---GCTGACAGG-----G--AGAAGACCA- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8192865 306 - 8369578 TCTGGCACTG--TCATGTC--TGCGT---CACAAAT-----CCTGCTCTCCACCT--ACTCTGCCTCTGAGACTCAGGCCACATGTGTTTCTGTTTGGCCTCATGGGGATGGACACT--GTGTCGCC--CCAGTGTCTGC-TGTCGCCT--CGAGCACCCA--TACT----TGCCCCTTCCCTGCATCCTCACTTCCTTGGCTGGTGGCCT-TCACTTCAGCCACTCTTGCCTGAGACC-CCCGCATGCCTTGCCTAATTGTT---C--TGCTGAAACCCTCCGAGGAAACTCCAAGTCTGTCTTCTCTGCCTGTCTAAG---G---GCTGACAGG-----G--AGAAGACCA- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97840939 306 + 106955855 TCTGGCACTG--TCATGTC--TGCGT---CACGAAT-----CCTGCTCTCCGCCT--ACTCTGCCTCTGAGACTCGGGCCACATGTACTCCTGTTTGGCCTCATGGGGATGGACACT--CTGTCACC--CCAGTGTCTGC-TGTCGCCT--CGAGCACCCA--TACT----TGCCCCTTCCCTGCATCCTCACTTCCTTGGCCGGTGGCCT-TCACTTCAGCCACTCTTGCCTGAGACC-CCCGCATGCCTTGCCTGATTGTC---C--TGCTGAATCCTTCCGAGAAAACCCCAAGTCTGTCTTCTCTGCCTGTCTAGG---G---GCTGACAGG-----G--AGAAGACCA- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123965811 305 + 133663169 TCTGGCACTG--TCATGTC--TGTGT---CACGAAT-----CCTGCTCTCCGCCT--ACTCTGCCTCTGTGACTCGGGCCAC-TGTGCTCCTGTTTGGCCTCATGGGGATGGCCACT--CTGTTGCC--CCAGTGTCTGC-TGTCGCCT--CAAGCGCCCA--TACT----TGCCCCTTCCCTGCATCCTCACTTCCTTGGCTGGTGGCCT-TCACTTCAGTCACTCTTGCCTGAGAAC-CCCAAATGCCTTGCCTAATTGTC---C--TGTTGAATCCCTCTGAGAAAACCCCAAGTCTGTCTTCTCGGCCTCTCTAGG---G---GCTGACAGG-----G--AGAAGACCA- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128213183 305 + 137757926 TCTGGCACTG--TCATGTC--TGTGT---CATGAAT-----CCTGCTCTCCGCCT--ACTCTGCCTCTGTGACTCGGGCCAC-TGTGCTCCTGTTTGGCCTCATGGGGATGGCCACT--CTGTTGCC--CCAGTGTCTGC-TGTCGCCT--CAAGCGCCCA--TACT----TGCCCCTTCCCTGCATCCTCACTTCCTTGGCTGGTGGCCT-TCACTTCAGTCACTCTTGCCTGAGACC-CCCAAATGCCTTGCCTAATTGTC---C--TGTTGAATCCCTCTGAGAAAACCCCACGTCTGTCTTCTCGGCCTCTCTAGG---G---GCTGACAGG-----G--AGAAGACCA- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10613079 305 - 16319837 TCTGGCACTG--TCATGTC--TGTGT---CACGAAT-----CCTGCTCTCCGCCT--ACTCTGCCTCTGTGACTCGGGCCAC-TGTGCTCCTGTTTGGCCTCATGGGGATGGCCACT--CTGTTGCC--CCAGTGTCTGC-TGTCGCCT--CAAGCGCCCA--TACT----TGCCCCTTCCCTGCATCCTCACTTCCTTGGCTGGTGGCCT-TCACTTCAGTCACTCTTGCCTGAGACC-CCCAAATGCCTTGCCTAATTGTC---C--TGTTGAATCCCTCTGAGAAAACCCCAAGTCTGTCTTCTCGGCCTCTCTAGG---G---GCTGACAGG-----G--AGAAGACCA- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12235525 305 + 20526591 TCTAGCACTG--TCATGTC--TGTGT---CACGAAT-----CCTGCTCTCCGCCT--ACTCTGCCTCTGTGACTCGGGCCAC-TGTGCTCCTGTTTGGCCTCATGGGGATGGCCACT--CTGTTGCC--CCAGTGTCTGC-TGTCGCCT--CAAGCACCCA--TACT----TGCCCCTTCCCTGCATCCTCACTTCCTTGGCTGGTGGCCT-TCACTTCAGTCACTCTTGCCTGAGACC-CCCAAATGCCTTGCCTAATTGTC---C--TGTTGAATCCCTCTGAGAAAACCCCAAGTCTGTCTTCTCGGCCTCTCTAGG---G---GCTGACAGG-----G--AGAAGACCA- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119208457 305 + 128539186 TCTGGCACTG--TCATGTC--TGTGT---CACGAAT-----CCTGCTCTCCGCCT--ACTCTGCCTCTGTGACTCGGGCCAC-TGTGCTCCTGTTTGGCCTCATGGGGATGGCCACT--CTGTTGCC--CCAGTGTCTGC-TGTCACCT--CAAGCACCCA--TACT----TGCCCCTTCCCTGCATCCTCACTTCCTTGGCTGGTGGCCT-TCACTTCAGTCACTCTTGCCTGAGACC-CCCAAATGCCTTGCCTAATTGTC---C--TGTTGAATCCCTCTGAGAAAACCCCAAGTCTGTCTTCTCGGCCTCTCTAGG---G---GCTGACAGG-----G--AGAAGACCA- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 528616 305 + 6255621 TCTAGCACTG--TCATGTC--TGTGT---CACGAAT-----CCTGCTCTCCGCCT--ACTCTGCCTCTGTGACTCGGGCCAC-TGTGCTCCTGTTTGGCCTCATGGGGATGGCCACT--CTGTTGCC--CCAGTGTCTGC-TGTCGCCT--CAAGCACCCA--TACT----TGCCCCTTCCCTGCATCCTCACTTCCTTGGCTGGTGGCCT-TCACTTCAGTCACTCTTGCCTGAGACC-CCCAAATGCCTTGCCTAATTGTC---C--TGTTGAATCCCTCTGAGAAAACCCCAAGTCTATCTTCTCGGCCTCTCTAGG---G---GCTGACAGG-----G--AGAAGACCA- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4584121 305 - 8658521 TCTGGCACTG--TCATGTC--TGTGT---CACGAAT-----CCTGCTCTCCGCCC--ACTCTGCCTCTGTGACTCAGGCCAC-TGTGCTCCTGTTTGGCCTCGTGGGGATGGCCACT--CTGTTGCC--CCAGTGTCTGC-TGTCGCCT--CAAGCACCTA--TACT----TGCCCCTTCCCTGCATCCTCACTTCCTTGGCTGGTGGCCT-TCACTTCAGTCACTCTTGCCTGAGACC-CCCAAATGCCTTGCCTAATTGTC---C--TGTTGAATCCCTCTGAGAAAACCCCAAGTCTGTCTTCTCGGCCTCTCTAGG---G---GCTGACAGG-----G--AGAAGACCA- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114789622 306 + 124281992 CCCGGCACTG--TCATGTC--TGTGT---CACGAAT-----CCCGCTCTCCACCT--GCTCTGCTTCTGTTACTCGGGATACACGTGCTCCTATTTGGTCTCATGGGGATGGCCAGT--CTGTTGTG--CTGGTGTCTGC-TGTTGCCT--CGAACTCCCA-CCACT----TGCCCTTTCCCTGTGTCCTCACGTCTTTGGCTGGTGGCCC-TCACTTCAGCCACGCTTGCCCGAGA-C-CCCGAATGCCTTGCCTAGTTGTC---C--TGTTGAATCCCTCCGAGAAAACCCCAAGTCTGTCTTCTCTGCCTCTCTAGG---G---GCTGGCAGC-----A--AGAAGACCA- i calJac3.chr9 I 5 C 0 s saiBol1.JH378194 432113 305 - 9212255 CCCGGCACTG--TTTCGTC--TGTGC---CACGAAT-----CTCGCTCTCCGCCT--GCTCTGCTTCTGTGACTCGGGATACACATGCTCCTATTTGGCCTCATGGGGACAGCCAGT--CTGTTGCG--CCGGTGTCTGC-TGCGGCCT--CGAGCTCCCA-CCACT----TGCCCCTTCCCTGCATCCTCACTTCTTTGGCTGGTGGCCC-TCACTTCAGCCACACTTGCCCGAGA-C-CCCAAATGCCTTGCC---TTGTC---C--TGTTGAATCCCTCCAAGAAAACCCCAAGTCTGTCTTCTCTGCCTCTCTAGG---G---GCTGGCAGC-----AAGAGAAGACCA- i saiBol1.JH378194 I 5 C 0 s cebCap1.NW_016107484v1 2847434 306 + 4466143 CCCGGCGCTA--TCGTGTC--TGTGT---CACAAAT-----CCCGCTCTCCGCCT--GCTCTGCTTCTGTGACTCGGGATACACGTGCTCCAATTTGGTCTCATGGGGACGGTCAGT--CTGTTGCG--CCGGTGTCTGC-TGTTGCCT--CGAGCTCCCA-CCACT----TGCCCCTTCCCTGCGTCCTCACTTCTTTGGCTGGTGGCCC-TCACTTCAGCCACGCTTGCCCAAGA-C-CCCGAATGCCTTGCCTGGTTGTC---C--TGTTGAATCCCTCCGAGAAAACCCCAAGTCTGTCTTCTCTGCCTCTCTAGG---G---GCTGGCAGC-----A--AGAAGACCA- i cebCap1.NW_016107484v1 I 5 C 0 s aotNan1.NW_018491581v1 1554826 306 + 5364348 CCCAGCACTG--TCGTGTC--TATGT---CACGAAT-----CCCGCTCTCCGCCT--GCTCTGCTTCTGTGACTCGGGATACACGTGCTCGTGTTTGGTCTCATGGGGATGGCCAGT--CTCTTGAG--CCGATGTCTGC-TGTTGCCT--CGAGCTCCCA-CCACT----TGCCCCTTCCCTGTGTCCTCACTTCTTTGGCTGGTGGCCC-TCACTTCAGCCACGCTTGCCCGAGA-C-CCTGGATGCCTTCCCTGGTTGTC---C--TATTGAATCCCTCCGAGAAAACCCCAAGTCTGTCTTCTCTGCCTCTCTAGG---G---GCTGGCAGC-----A--AGAAGACCA- i aotNan1.NW_018491581v1 I 10 I 183 s otoGar3.GL873618 4272550 313 + 7922563 TGTGACACCA--TTCTATTTGTGTGT---CACAGACCCCCACCTCCTCTCTGCCTAGAGTTTGTCTCCAGGGCTCTGGCTACACAT------ATGTGACCTCATGGAGACAGCCATT--CAGTCAC---CCAGGGTCTAC-TGTCATCT--TAAGCTCCC---TGCTACCATGTTCCTTCTCTGCACCCTCACTTC-----CTGTTGGCCCATCACTTCAGCCGTCCTTGCCCAAATAT-CTC--ACCCCTTGCCTAACTGTCTTTC--TGCTGAGTCCCTCCGTAGAAACCCCAGGTCTGTGTTCTCTGCCTCTCCAGG---G---GCTGAGTGGTAACTG--AGAAAACCA- i otoGar3.GL873618 I 4 C 0 s canFam3.chr26 33136411 289 - 38964690 CCCAGTGCTGTTTTATGTC--AGCAT---CATCAAT-----------GTGCTGCT--GGTCAGCCTCTGTGACTCTGGCTGTACCTGTTTGTAC-TGGCCTTGTGGGGACCACCACC--CACCTCTCTTCCTGTCTCCTC-TGTAACC------GGACCCT-----G----TGCTCCTTGCTT-----------TCCTTTGCTGTTGGCTTGTCACTTCACCCTCTCTTGCTCCA-ACC-CGCGGCCCCCTTGCCCTGTTGTC---CTTTGTTAAATGCCTGTGAGG-GGCTCTGAGTCTGTCTTCTGCGCCTGTCTGGGGCTG---AGTGACACT-----G--AGAAAACCA- i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 814301 305 - 1116856 CCTGACACCG--TTCTGTC--TTGGCAGGCATAAAT-----TCTCATTCCC------ACTCT--------------TGCCACCTTCGTTCTAATGTGACCTTGTGGAGACTGCTATTGCCAATCACT--CAACTTTCTTCTTATCAGCTTCTGAACTCCCAAACAGC----GGTTCCTTCCTTTCAGCTTCCCATCCATTGCAGGTGGCCCACTGCTCCAACCACTCTTGCCCAAATCCATCCAACTCCCTTGCCTAATTGTCACTC--TGTTGAATCCTTCTAAGAACACCC--AGATTGACTTCTCTGCCTCTCCAGG---GATTGCTGGCTGT-----T--GGGAAACTCA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I a score=23101.000000 s hg38.chr12_KI270834v1_alt 42918 2 + 119498 TG s panTro5.chr12 127328954 2 + 137163284 TG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125679787 2 + 135337776 TG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193171 2 - 8369578 TG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97841245 2 + 106955855 TG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966116 2 + 133663169 TG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128213488 2 + 137757926 TG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10613384 2 - 16319837 TG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12235830 2 + 20526591 TG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119208762 2 + 128539186 TG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 528921 2 + 6255621 TG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4584426 2 - 8658521 TG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114789928 2 + 124281992 CG i calJac3.chr9 C 0 I 186 s saiBol1.JH378194 432418 2 - 9212255 TG i saiBol1.JH378194 C 0 I 218 s cebCap1.NW_016107484v1 2847740 2 + 4466143 TG i cebCap1.NW_016107484v1 C 0 I 244 s otoGar3.GL873618 4272863 2 + 7922563 TG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33136700 2 - 38964690 CG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 814606 2 - 1116856 TA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e aotNan1.NW_018491581v1 1555132 183 + 5364348 I a score=40970.000000 s hg38.chr12_KI270834v1_alt 42920 6 + 119498 CAGCCA- s panTro5.chr12 127328956 6 + 137163284 CAGCCA- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125679789 6 + 135337776 CAGCCA- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193173 6 - 8369578 CAGCCA- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97841247 6 + 106955855 CAGCCA- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966118 6 + 133663169 CAGCCA- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128213490 6 + 137757926 CAGCCA- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10613386 6 - 16319837 CAGCCA- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12235832 6 + 20526591 CAGCCA- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119208764 6 + 128539186 CAGCCA- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 528923 6 + 6255621 CAGCCA- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4584428 6 - 8658521 TAGCCA- i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4272865 6 + 7922563 CAGCCA- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33136702 6 - 38964690 AATTCA- i canFam3.chr26 C 0 I 1575 s dasNov3.JH568189 814608 7 - 1116856 CAACCCA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e aotNan1.NW_018491581v1 1555132 183 + 5364348 I e cebCap1.NW_016107484v1 2847742 244 + 4466143 I e saiBol1.JH378194 432420 218 - 9212255 I e calJac3.chr9 114789930 186 + 124281992 I a score=17036.000000 s hg38.chr12_KI270834v1_alt 42926 3 + 119498 CAA s panTro5.chr12 127328962 3 + 137163284 CAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125679795 3 + 135337776 CAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193179 3 - 8369578 CAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97841253 3 + 106955855 CCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966124 3 + 133663169 CAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128213496 3 + 137757926 CAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10613392 3 - 16319837 CAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12235838 3 + 20526591 CAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119208770 3 + 128539186 CAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 528929 3 + 6255621 CAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4584434 3 - 8658521 CAA i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4272871 3 + 7922563 GGA i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 814615 3 - 1116856 TAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e canFam3.chr26 33136708 1575 - 38964690 I e aotNan1.NW_018491581v1 1555132 183 + 5364348 I e cebCap1.NW_016107484v1 2847742 244 + 4466143 I e saiBol1.JH378194 432420 218 - 9212255 I e calJac3.chr9 114789930 186 + 124281992 I a score=18347.000000 s hg38.chr12_KI270834v1_alt 42929 2 + 119498 AG s panTro5.chr12 127328965 2 + 137163284 AG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125679798 2 + 135337776 AG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193182 2 - 8369578 AG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97841256 2 + 106955855 AG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966127 2 + 133663169 AG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128213499 2 + 137757926 AG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10613395 2 - 16319837 AG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12235841 2 + 20526591 AG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119208773 2 + 128539186 AG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 528932 2 + 6255621 AG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4584437 2 - 8658521 AG i colAng1.NW_012116043v1 C 0 C 0 s aotNan1.NW_018491581v1 1555315 2 + 5364348 AG i aotNan1.NW_018491581v1 I 183 C 0 s otoGar3.GL873618 4272874 2 + 7922563 GG i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 814618 2 - 1116856 AG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e canFam3.chr26 33136708 1575 - 38964690 I e cebCap1.NW_016107484v1 2847742 244 + 4466143 I e saiBol1.JH378194 432420 218 - 9212255 I e calJac3.chr9 114789930 186 + 124281992 I a score=302113.000000 s hg38.chr12_KI270834v1_alt 42931 37 + 119498 ACAGATG--------------------------------TCTCCATAAATCCCA-----------------GTCCCCAGCTGGCAC s panTro5.chr12 127328967 37 + 137163284 ACAGATG--------------------------------TCTCCATAAATCCCA-----------------GTCCCCAGCTGGCAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125679800 37 + 135337776 ACAGATG--------------------------------TCTCCATAAATCCCA-----------------GTCCCCAGCTGGCAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193184 37 - 8369578 ACAGATG--------------------------------TCTCCATAAATCCCA-----------------GTCCCCAGCTGGCAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97841258 37 + 106955855 ACAGATG--------------------------------TCTCCATAAATCCCA-----------------GTCCCCAGCTGGCAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966129 37 + 133663169 ACAGATG--------------------------------TCTCCATACATCCCA-----------------GTCCCCAGCTGGCAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128213501 37 + 137757926 ACAGATG--------------------------------TCTCCATACATCCCA-----------------GTCCCCAGCTGGCAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10613397 37 - 16319837 ACAGATG--------------------------------TCTCCATACATCCCA-----------------GTCCCCAGCTGGCAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12235843 37 + 20526591 ACAGATG--------------------------------TCTCCATACATCCCA-----------------GTCCCCAGCTGGCAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119208775 37 + 128539186 ACAGATG--------------------------------TCTCCATACATCCCA-----------------GTCCCCAGCTGGCAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 528934 37 + 6255621 ACAGATG--------------------------------TCTCCATACATCCCA-----------------GTCCCCAGCTGGCAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4584439 37 - 8658521 ACAGATG--------------------------------TCTCCATAAATCCCA-----------------GTCCCCAGCTGGCGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114790116 37 + 124281992 ACAGGTG--------------------------------TCTCCATTAATCCCA-----------------GTCCCTGGCTGGCAC i calJac3.chr9 I 186 C 0 s aotNan1.NW_018491581v1 1555317 37 + 5364348 ACAGGTG--------------------------------TCTCCATCAGTCCCA-----------------GTCCCCGGCTGGCAC i aotNan1.NW_018491581v1 C 0 I 5 s otoGar3.GL873618 4272876 36 + 7922563 ACA-ATG--------------------------------CCTCCCTAAATCACA-----------------GTCTCCAGTTAGAAT i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 814620 84 - 1116856 ACTGGTGCATCTGTGAATTCAGACTAACTTGAACCAGGCTCTCCCTCCATGTCACCTTACAACTTATATGTGTCCCTAAGTGGC-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e canFam3.chr26 33136708 1575 - 38964690 I e cebCap1.NW_016107484v1 2847742 244 + 4466143 I e saiBol1.JH378194 432420 218 - 9212255 I a score=77791.000000 s hg38.chr12_KI270834v1_alt 42968 11 + 119498 ACTCACTCCTG s panTro5.chr12 127329004 11 + 137163284 ACTCACTCCTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125679837 11 + 135337776 ACTCACTCCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193221 11 - 8369578 ACTCACTCCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97841295 11 + 106955855 GCTCACTCCCG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966166 11 + 133663169 CCTCACTCCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128213538 11 + 137757926 CCTCACTCCTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10613434 11 - 16319837 CCTCACTCCTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12235880 11 + 20526591 CCTCACTCCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119208812 11 + 128539186 CCTCACTCCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 528971 11 + 6255621 CCTCACTCCTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4584476 11 - 8658521 CCTCACTCCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114790153 11 + 124281992 GCGCACTCCTG i calJac3.chr9 C 0 C 0 s otoGar3.GL873618 4272912 11 + 7922563 GCTCCCTGCTC i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 814704 11 - 1116856 TCTCTCTACTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e canFam3.chr26 33136708 1575 - 38964690 I e aotNan1.NW_018491581v1 1555354 5 + 5364348 I e cebCap1.NW_016107484v1 2847742 244 + 4466143 I e saiBol1.JH378194 432420 218 - 9212255 I a score=1428352.000000 s hg38.chr12_KI270834v1_alt 42979 235 + 119498 GCTCCAAAGGAGCATTGGGc---cttt---tccccaaatatctaccctg-ccctttccgcgctctccgcagctgatctttctccctgcttcaacaggaacaacggaagctgtctgataggaatctctcc---ttccagctgaaaagccta---------------tagc--------tcctgtctctgactttct---ccttttacagtggaa---gaggccacccccactgcaccccagccaaggccaacc--------c-------agccccttcctccttctcagg s panTro5.chr12 127329015 235 + 137163284 GCTCCAAAGAAGCATTGGGC---CTTT---TCCCCGAATATCCACCCTA-CCCTCTCCGCGCTCTCCGCAGCTGATCTTTCTCCCTGCTTCAACAGGAACAACGGAAGCTGTCTGATAGGAATCTCTCC---TTCCAGCTGAAAAGCCCG---------------CAGC--------TCCTGTCTCTGACTTTCT---CCTTTTACAGTGGAA---GAGGACACCCCCACTGCACCCCAGCCAAGGCCAACC--------C-------AGCCCCTTCCTCCTTCTCAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125679848 235 + 135337776 GCTCCAAAGAAGCATTGGGc---cttt---tccccgaatatccacccta-ccctctccgcgctctccgcagctgatctttctccctgcttcaacaggaacaacggaagctgtctgataggaatctctcc---ttccagctgaaaagcccg---------------cagc--------tcctgtctctgactttct---ccttttacagtggaa---gaggacacccccactgcaccccagccaaggccaacc--------c-------agccccttcctccttctcagg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193232 235 - 8369578 GCTCCAAAGGAGCATTGGGC---CTTT---TCCCCAAATATCCACCCTG-CCCTTTCCGCGGTCTCCGCAGCTGATCTTTCTCCCTGCTTCAACAGGAACAACGGAAGCTGTCTGATAGGAATCTCTCC---TTCCAGCTGAAAAGCCTA---------------CAGC--------TCCTGTCTCTGACTTTCT---CCTTTTACAGTGGAA---GAGGCCACCCCCACTGCACCCCAGCCAAGGCCAACC--------C-------AGCCCCTTCCTCCTTCTCAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97841306 234 + 106955855 GCT-CAAAGGAGCATTGGGC---CTTT---TCCCCAAATCTCCACCCTG-CCCGCTCCGCGCTCTCCGCAGCTGATCTTTCTTCCTGCTTCAACAGGGACAACAGAAGCTGTCTGATAGCAATCTCTCC---TTCCAGCTGAAAAGCCCA---------------CAGC--------TCCTGTCTTCCACTTTCT---CCTTTTACAGCAGAA---GACGACACccccactccaccccagccaaggccaacc--------c-------agcccCTTCCTCCTTCTCAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966177 234 + 133663169 GCTCCAAAGGAGCGTTGGGC---CTTT---CCCCCACATCTCCACCCTG-CCC-CTCGCCTCTCTCTGCAGCTGATCTTTCTTCCTGCTTCCACAGGAACAGCAGCAGCTGTCTGATAGGAATCTCTCC---TTCCAGCGGAAAAGCCCA---------------CAGC--------TCCCGTCTTCAGCTTTCT---CCTTTTACAGTGGAA---GAGGACACCCCCACTCCACCTCAGCCAAGGCCAACC--------C-------AGCCCCTTCCTCCTTCTCAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128213549 234 + 137757926 GCTCCAAAGGAGCGTTGGGC---CTTT---TCCCCACATCTCCACCCTG-CCC-CTCGCCTCTCTCTGCAGCTGATCTTTCTTCCTGCTTCCACAGGAACAGCAGCAGCTGTCTGATAGGAATCTCTTC---TTCCAGCGGAAAAGCCCA---------------CAGC--------TCCCGTCTTCAGCTTTCT---CCTTTTACAGTGGAA---GAGGACACCCCCACTCCACCTCAGCCAAGGCCAACC--------C-------AGCCCCTTCCTCCTTCTCAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10613445 234 - 16319837 GCTCCAAAGGAGCGTTGGGC---CTTT---TCCCCACATCTCCACCCTG-GCC-CTCGCCTCTCTCTGCAGCTGATCTTTCTTCCTGCTTCCACAGGAACAGCAGCAGCTGTCTGATAGGAAGCTCTCC---TTCCAGCGGAAAAGCCCA---------------CAGC--------TCCCGTCTTCAGCTTTCT---CCTTTTACAGTGGAA---GAGGACACCCCCACTCCACCTCAGCCAAGGCCAACC--------C-------AGCCCCTTCCTCCTTCTCAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12235891 234 + 20526591 GCTCCAAAGGAGCGTTGGGC---CTTT---TCCCCACATCTCCACCCTG-CCC-CTCGCCTCTCTCTGCAGCTGATCTTTCTTCCTGCTTCCACAGGAACAGCAGCAGCTGTCTGATAGGAATCTCTCC---TTCCAGCGGAAAAGCCCA---------------CAGC--------TCCCGTCTTCAGCTTTCT---CCTTTTACAGTGGAA---GAGGACAGccccactccaccccagccaaggccaacc--------c-------agcccCTTCCGCCTTCTCAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119208823 234 + 128539186 GCTCCAAAGGAGCGTTGGGC---CTTT---TCCCCACATCTCCACCCTG-CCC-GTCGCCTCTCTCTGCAGCTGATCTTTCCTCCTCCTTCCACAGGAACAGCAGCGCCTGTCTGATAGCAATCTCTCC---TTCCAGCGGAAAAGCCTG---------------CAGC--------TCCTGTCTTCAGCTTTCT---CCTTTTACAGTGGAA---GAGGACACCCCCACTCCGCCCCAGCCAAGGCCAACC--------C-------AGTCCCTTCCTCCTCCTCAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 528982 234 + 6255621 GCTCCAAAGGAGCGTTGGGC---CTTT---TCCCCACATCTCCACCCTG-CCC-CTCGCCTTTCTCTGCAGCTGATCTTTCTTCCTGCTTCCACAGGAACAGCAGCAGCGGTCTGATAGGAATCTCTCC---TTCCAGCGGAAAAGCCCA---------------CAGC--------TCCCGTCTTCAGCTTTCT---CCTTTTACAGTGGAA---GAGGACAGccccactccaccccagccgaggccaacc--------c-------agcccCTTCCTCCTTCTCAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4584487 235 - 8658521 GCTCCAAAGGAGCGTTGGGC---CTTT---TCCCCACATCTCCACCCTGCCCC-CTCCCCTCTCTCCGCAGCTGATCTTTCTTCCTCCTTCAACAGGAACAGCAGAAGCTGTCTGATAGGAATCTCTCC---TTCCAGCGGAAAAGCCCA---------------CGGC--------TCCTGTCTTCAGCTTTCT---CCTTTTACAGTGGAA---GAGGACACCcccactccaccccagccaaggccaacc--------c-------agcccCTTCCTCCTTCCCAGG i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4272923 251 + 7922563 ACTCCACAGAGCAGCTGACCCATCTTC---TCTCTAGACCCTCCCTCTG-CTCTCTCCCCTTTCTCTGCAGAGGATCTT----CTTGTTTCAACTGGAAAAATAGCA-TGGTCTGGTAGGAATTTCTCC---TTCCAGCTGTCAAGCCTGCTGGTGCCATTGTCCCAGC--------TCCTGTCTC---CTCTGT---ACTTTCACAGCAAAA---GAGGAGACCCTGCCCCCAC--CGGCCAAGGCCACCCTGCCAGGTC-------ACCTGCCCCTCCGTCCTCAGG i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 814715 255 - 1116856 -CCTCAACAGGGCATTTACC---TTCTGCCTCCCCATATTTTCATCCTA-ACATCTCCCCAGTCTCAGCAGATAACCTCTCTGCTTTCTTCAACAGGGAAAACAGAAGCCATCAAATAGAAATCTCTCCCATTCTCAGCTGTCAAACTGG---------------CAGCGTCAATTGCCCCACCTCCCATCTTCTGGCCCTTTTCCAGTGGAAGAGGAGGAAGCCCCC------TCCTGGCCATGGCAAACC--------TGCCCCTGATCCCTTCCCACCTTCTCAGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e canFam3.chr26 33136708 1575 - 38964690 I e aotNan1.NW_018491581v1 1555354 5 + 5364348 I e cebCap1.NW_016107484v1 2847742 244 + 4466143 I e saiBol1.JH378194 432420 218 - 9212255 I e calJac3.chr9 114790164 0 + 124281992 C a score=56754.000000 s hg38.chr12_KI270834v1_alt 43214 6 + 119498 ctcctc s panTro5.chr12 127329250 6 + 137163284 CTtctc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680083 6 + 135337776 ctcctc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193467 6 - 8369578 CTCCTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97841540 6 + 106955855 ctcctc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966411 6 + 133663169 CTCCTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128213783 6 + 137757926 CTCCTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10613679 6 - 16319837 CTCCTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236125 6 + 20526591 CTCCTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209057 6 + 128539186 CTCCTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529216 6 + 6255621 CTCCTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4584722 6 - 8658521 CTCCTC i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 432638 6 - 9212255 CTCCTG i saiBol1.JH378194 I 218 C 0 s aotNan1.NW_018491581v1 1555359 6 + 5364348 CTCCTG i aotNan1.NW_018491581v1 I 5 C 0 s otoGar3.GL873618 4273174 6 + 7922563 CTTCTT i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 814970 6 - 1116856 CTCCTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e canFam3.chr26 33136708 1575 - 38964690 I e cebCap1.NW_016107484v1 2847742 244 + 4466143 I e calJac3.chr9 114790164 0 + 124281992 C a score=68355.000000 s hg38.chr12_KI270834v1_alt 43220 18 + 119498 gctccatctgag----------------------------tttatc s panTro5.chr12 127329256 18 + 137163284 gctccatctgag----------------------------tctctc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680089 20 + 135337776 gctccatctgag--------------------------tctctctc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193473 20 - 8369578 GCTCCATCTGAG--------------------------TTtctctc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97841546 46 + 106955855 gctccatctgagtctccctctctctctctcatcttcagtctccccc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966417 12 + 133663169 GTTCCATCTGAG---------------------------------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128213789 14 + 137757926 GTTCCATCTGAG--------------------------------tc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10613685 14 - 16319837 GTTCCATCTAAG--------------------------------tc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236131 14 + 20526591 GTTCCATCTGAG--------------------------------tc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209063 12 + 128539186 GTTCCATCTGAG---------------------------------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529222 14 + 6255621 GTTCCATCTGAG--------------------------------tc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4584728 14 - 8658521 GTTCCATCTGAG--------------------------------TC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114790164 18 + 124281992 GCTCCATCTGAG----------------------------TCTCTC i calJac3.chr9 C 0 I 4 s saiBol1.JH378194 432644 18 - 9212255 GCTCCATCTGAG----------------------------TCTCTC i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1555365 18 + 5364348 GCTCCATCTGAG----------------------------tctctc i aotNan1.NW_018491581v1 C 0 I 2 s otoGar3.GL873618 4273180 14 + 7922563 GCAGCATTGGCG--------------------------------CC i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 814976 16 - 1116856 GCTCCAT-TGGT----------------------------TTTCT- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e canFam3.chr26 33136708 1575 - 38964690 I e cebCap1.NW_016107484v1 2847742 244 + 4466143 I a score=755244.000000 s hg38.chr12_KI270834v1_alt 43238 71 + 119498 tctctctctcatgttcagtctccgcctctctacca--tcctgtcagctctt-agacatgctCAAGTAAAG------CCTT s panTro5.chr12 127329274 71 + 137163284 tctctctctcATGTTCAGTCTCCGCCTCTCTACCA--TCCTGTCAGCTCTT-AGACATGCTCAAGTAAAG------CCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680109 71 + 135337776 tctctctctcatgttcagtctccgcctctctacca--tcctgtcagctctt-agacatgctCAAGTAAAG------CCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193493 71 - 8369578 tctctctctcatgttcagtctcccactctctACCA--TCCTGTCAGCTCTT-AGACATGCTCAAGTAAAG------CCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97841592 71 + 106955855 tctctctctcatcttcagtctccccctctctACCA--TCCCGTCAGCCCTC-AGACATGCTCAAGTAAAG------CCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966429 69 + 133663169 --TCTCTCTCATCTTCAGTCTCCCCCTCTCTACCA--TCCCGTCAGCTCTT-AGACATGCTCAAGTAAAG------CCTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128213803 71 + 137757926 tctctctctcatcttcagtctccccctctctACCA--TCCCGTCAGCTCTT-AGACACGCTCAAGTAAAG------CCTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10613699 71 - 16319837 tctctctctcatcttcagtctccccctctctacca--tcccatcagctctT-AGACACGCTCAAGTAAAG------CCTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236145 71 + 20526591 tctctctctcatcttcagtctccccctctctACCA--TCCCGTCAGCTCTT-AGACACGCTCAAGTAAAG------CCTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209075 71 + 128539186 TCTCTCTCTCATCTTCAGTCTCCCCCTCTCTACCA--TCCCGTCAGCTCTT-AGACACACTCAAGTAAAG------CCTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529236 71 + 6255621 tctctctctcatcttcagtctccccctctctACCA--TCCCGTCAGCTCTT-AGACACACTCAAGTAAAG------CCTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4584742 71 - 8658521 TTTCTCTCTCATCTTCAGTCTCCCCCTCTCTACCA--TCCCGTCAACTCTT-AGACACGCTCAAGTAAAG------CCTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114790186 77 + 124281992 CCTCTCTGTCACCTTCAGTCTCCCCCTCTCTACCA--TCCCATCAGCTCTT-AGACATGCTCCAGTGATGAGTAGCTCTT i calJac3.chr9 I 4 C 0 s saiBol1.JH378194 432662 63 - 9212255 --------TCACCTGCAGTCTCCCCCTCTCTACCA--TCCCATCAGCTCTT-ACACGTGCTGAAGTAAAG------CCTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2847986 71 + 4466143 TCTCTCTCTCACCTCCAGTCTCCCCCTCTCTACCA--TCCCAGCAGCTCTT-AGACATGCTCAAGTAAAG------CCTT i cebCap1.NW_016107484v1 I 244 C 0 s aotNan1.NW_018491581v1 1555385 71 + 5364348 tctctctctcaccttcagtctccccctctctACCA--TCTCATCAGCTCTT-AAACATGCTCAAGTAAAG------CCTT i aotNan1.NW_018491581v1 I 2 C 0 s otoGar3.GL873618 4273194 74 + 7922563 TCCCACTCCCATCCGTGGTCTCTCTCTGTCTGCCAGCTCCCAGCAACTCCTAAGACATGCTCTAGTAAAA------CTTT i otoGar3.GL873618 C 0 I 1487 s dasNov3.JH568189 814992 60 - 1116856 CCTTTCTCTCATATC--GTCATTCCCCCTCTACCA-----------GTTCT-ACGCATGTTCAGGTAAAC------CTTT i dasNov3.JH568189 C 0 I 2183 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e canFam3.chr26 33136708 1575 - 38964690 I a score=301625.000000 s hg38.chr12_KI270834v1_alt 43309 34 + 119498 GCATGGCCTGAGCGGAGGCGATGGTGATTA-------------------------CTCG s panTro5.chr12 127329345 34 + 137163284 GCATGGCCTGGGTGGAGGCGATGGTGATTA-------------------------TCCG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680180 34 + 135337776 GCATGGCCTGGGTGGAGGCGATGGTGATTA-------------------------CCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193564 34 - 8369578 GCATGGCCTGGGTGGAGGCGATGGTGATTA-------------------------CCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97841663 34 + 106955855 GCATGGCCGGGGTGGAGGCATTGGTGATTA-------------------------CCCG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966498 34 + 133663169 GCATGGCCTGGGTGGAGGCAATGGTGATTA-------------------------CCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128213874 34 + 137757926 GCATGGCCTGGATGGAGGCAATGGTGATTA-------------------------CCTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10613770 34 - 16319837 GCATGGCCTGGGTGGAGGCAATGGTGATTA-------------------------CCTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236216 34 + 20526591 GCATGGCCTGGGTGGAGGCGATGGTGATTA-------------------------CCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209146 34 + 128539186 GCGTGGCCTGGGTGGAGGCGATGGTGATTA-------------------------CCCG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529307 34 + 6255621 GCATGGCCTGGGTGGAGGCGATGGTGATTA-------------------------CCCG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4584813 34 - 8658521 GCATGGCCTGGGTGGAGGTGATGGTGATTA-------------------------CCCG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114790263 59 + 124281992 GCATGGCCTGGGCGGAGGTGATGGTGATTATAGGAAGGGCCAGGGCTCCCGAGCTCCCG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 432725 59 - 9212255 GCATGGCCTGGGCAGAGGTGATGGTGATTACAGGAAGGGCCAGGGCTCCCGCGCTCCCG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2848057 59 + 4466143 GCATGGTCTGGGCAGAGGTGATGGTGATTACAGGAGGGGCCAGGGCTCCCGAGCTCCTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1555456 59 + 5364348 GCATGGCCTGGGTGGAGATGATGGTGATTACAGGAAGGGCCAGGGCTCCCGAGCTCCCG i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e dasNov3.JH568189 815052 2183 - 1116856 I e canFam3.chr26 33136708 1575 - 38964690 I e otoGar3.GL873618 4273268 1487 + 7922563 I a score=141111.000000 s hg38.chr12_KI270834v1_alt 43343 13 + 119498 GGCACCTGCAGCT s panTro5.chr12 127329379 13 + 137163284 GGCACCTGCAGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680214 13 + 135337776 GGCACCTGCAGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193598 13 - 8369578 GGCGCCTGCAGCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97841697 13 + 106955855 GGCACCTGCAGCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966532 13 + 133663169 GGCACCCGCAGCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128213908 13 + 137757926 GGCACCCGCAGCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10613804 13 - 16319837 GGCACCCGCAGCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236250 13 + 20526591 GGCACCCGCAGCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209180 13 + 128539186 GGCACCCGCAGCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529341 13 + 6255621 GGCACCCGCAGCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4584847 13 - 8658521 GGCACCCGCAGCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114790322 13 + 124281992 GGCACCTGCCGCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 432784 13 - 9212255 GGCACCTGCCGCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2848116 13 + 4466143 GGCACCTACCGCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1555515 13 + 5364348 GGCACCTGCCGCT i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33138283 13 - 38964690 GGCACCTGGTGCC i canFam3.chr26 I 1575 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124794727 1115 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e dasNov3.JH568189 815052 2183 - 1116856 I e otoGar3.GL873618 4273268 1487 + 7922563 I a score=2566356.000000 s hg38.chr12_KI270834v1_alt 43356 266 + 119498 TCC---ATCTCTCCCCTGCCCCG-CCTGGGTTGCTGCCTTCCCGC--ATTGTCCGTTGTTCCTGCCCCTCTCCTGCTGCAGCACTTA----TGGCTCCACACT--GAAATGGCCActt--cttgcctgtatctgtcc----------------cccacctggccctcgaacaactgcaagggtagggaccagggctc-tctgcttcactgttgtattcccagGGAAGTGTATGT-----CCAGTGAAAGGGAAGTGTTAGTTGAAAATACTCAGAAAGTGCCTGACAAGTGCACAAGTCACA s panTro5.chr12 127329392 266 + 137163284 TCC---ATCTCTCCCCTGCCCCG-CCTGGGTTGCTGCCTTCCCGC--ATTGTCCGTTGTTCCTGCCCCGCTCCTGCTGCAGCACTTA----TGGCTCCACACT--GAAATGGCCACTT--CTTGCCTGtatctgtcc----------------cccacctggccctccaacaactgcaagggtagggaccagggctc-tctgcttcactgttgtattcccagGGAAGTGTATGT-----CCAGTGAATGGGAAGCATTAGTTGAAAATACTCAGAAAGTGCCTGACAGGTGCACAAGTCACA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680227 266 + 135337776 TCC---ATCTCTCCCCTGCCCCG-CCTGGGTTGCTGCCTTCCCGC--ATTGTCCGTTGTTCCTGCCCCTCTCCTGCTGCAGCACTTA----TGGCTCCACACT--GAAATGGCCActt--cttgcctgtatctgtcc----------------cccacctggccctgcaacaactgcaagggtagggaccagggctc-tctgcttcactgttgtattcccagGGAAGTGTATGT-----CCAGTGAATGGGAAGCATTAGTTGAAAATACTCAGAAAGTGCCTGACAGGTGCACAAGTCACA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193611 265 - 8369578 TCC---ATCTCTCCCCTACCCCG-CCTGGGTTGCTGCCTTCCCGC--ATTGTCTGTTGTTCTTGCCCCTCTCCTGCTGCAGCACTTA----TGGCTCCACACT--GAAATGGCCActt--cttgcctgtatctgt-c----------------cccacctggccctccaacaactgcaagggtagggaccagggctc-tctgcttcactgttgtattcccagGGAAGTGTATGT-----CCAGTGAATGGGAAGTGTTAGTTGAAAATACTCAGAAAGTGCCTGATAAGTGCACAAGTCACA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97841710 266 + 106955855 TCT---ATCGCTCCCCTGCCCCG-CCTGGGTTGCTGCCTTCCCGC--GTTGTCCGTTGTTCCTGCACCTCTCCTGCTGCAGCACTTA----CGGCGCCACACT--GAAATGGCCActt--cttgcctgtatctgtcc----------------cccacctggccctccaacaactgcaagcgtagggaccagggctc-tccgcttcactgttgtattcccagGGAAGCGTATGT-----CCAGTGAATGGGAAGCGTTAGTTGAAAATACTCAGAAAGTGCCTGACCAGTGCACAAGTGACA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966545 266 + 133663169 TCC---ATCTCTCCCCTGCCCCG-CCTGGGTTGCTGCCTTCCCGT--GTTGTCCGCTGTTTCTGCACGTCTCCCGCTGCAGCACTTA----CGGCTCCATACT--GAAATGGCCACTT--CTTGCCTGTATCTGTCC----------------CCCACCTGGCCCTCCAACAACTGCAAGGGTAGGGACCAGGGCTC-TCTGCTTCGCTATTGTATTCGCAGGGAAGTGTATGT-----CCAGTGAATGGGAAGCATTAGTTGAAAATACTCAGAAAGTGCCTGACCAGTGCACAAGTCACA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128213921 266 + 137757926 TCC---ATCTCTCCCCTGCCCTG-CCTGGGTTGCTGCCTTCCCGT--GTTGTCTGCTGTTTCTGCACGTCTCCCGCTGCAGCACTTA----CGGCTCCATACT--GAAATGGCCACTT--CTTGCCTGTATCTGTCC----------------CCCACCTGGCCCTCCAACAACTGCAAGGGTAGGGACCAGGGCTC-TCTGCTTCGCTATTGTATTCGCAGGGAAGTGTATGT-----CCAGTGAATGGGAAGCATTAGTTGAAAATACTCAGAAAGTGCCTGACCAGTGCACAAGTCACA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10613817 266 - 16319837 TCC---ATCTCTCCCCTGCCCCG-CCTGGGTTGCTGCCTTCCCGT--GTTGTCCGCTGTTTCTGCACGTCTCCCGCTGCAGCACTTA----CGGCTCCATACT--GAAATGGCCACTT--CTTGCCTGTATCTGTCC----------------CCCACCTGGCCCTCCAACAACTGCAAGGGTAGGGACCAGGGCTC-TCTGCTTCGCTATTGTATTCGCAGGGAAGTGTATGT-----CCAGTGAATGGGAAGCATTAGTTGAAAATACTCAGAAAGTGCCTGACCAGTGCACAAGTCACA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236263 266 + 20526591 TCC---ATCTCTCCCCTGCCCCG-CCTGGGTTGCTGCCTTCCCGT--GTTGTCCGCTGTTTCTGCACGTCTCCCGCTGCAGCACTTA----CGGCTCCATACT--GAAATGGCCACTT--CTTGCCTGCATCTGTCC----------------CCCACCTGGCCCTCCAACAACTGCAAGGGTGGGGACCAGGGCTC-TCTGCTTCGCTATTGTATTCGCAGGGAAGTGTATGT-----CCAGTGAATGGGAAGCGTTAGTTGAAAATACTCAGAAAGTGCCTGACCAGTGCACAAGTCACG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209193 266 + 128539186 TCC---ATCTCTCCCCTGCCCCA-CCTGGGTCGCTGCCTTCCCGC--GTTGTCCGCTGTTCCTGCACGTCTCCTGCTGCAGCACTTA----CGGCTCCATACT--GAAATGGCCACTT--CTTGCCTGCATCTGCTC----------------CCCATCTGTACCTCCAACAACTGCAAGGGTAGGGACCAGGGCTC-TCTGCTTCGCTATTATATTTGCAGGGAAGTGTATGT-----CCAGTGAATGGGAAGTGTTAGTTGAAAATACTCAGAAAGTGCCTGACCAGTGCACAAGTCACG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529354 266 + 6255621 TCC---ATCTCTCCCCTGCCCCG-CCTGGGTTGCTGCCTTCCCGT--GTTGTCCGCTGTTTCTGCACGTCTCCCGCTGCAGCACTTA----CGGCTCCATACT--GAAATGGCCACTT--CTTGCCTGCATCTGTCC----------------CCCACCTGGCCCTCCAACAACTGCAAGGGTAGGGACCAGGGCTC-TCTGCTTCGCTATTGTATTCGCAGGGAAGTGTATGT-----CCAGTGAATGGGAAGCGTTAGTTGAAAACACTCAGAAAGTGCCTGACCAGTGCACAAGTCACA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4584860 266 - 8658521 TCC---ATCTCTCCCCTGTCCCG-CATGGGTTGCTGCCTTCCCGC--GTTGTCCGCTGTTCCTGCACATCTCCCGCTGCAGCACTTA----TGGCTCCATACT--GAAATGGCCACTT--CTTGCCTGTATCTGTCC----------------CCCACCTGGCCCTCCAACAACTGCAAGGGTAGGGACCAGGGCTG-TCTGCTTCGCTATTGTATTCTCAGGGAAGTGTATGT-----CCAGTGAATGGGAAGCGTTAGTTGAAAATACTCAGAAAGTGCCTGACCAGTGCACAAGTCACT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114790335 260 + 124281992 TCT---GTCTCTCCCCTGCCCGG-GTTGCCTGTCTTCCTTTCCGC--ATTGTCTATTGTGCCTGCGCTTCTCCTGTGGCAGCACTTT----GGGCTCCACACTGAGAAATGGCTGCTT--CTTGCCGGTATCTGTCC----------------CCTACCTGGCTCTCCAACAACTGCAAGGCTGGGGACCAGAGCTC-TCTGCCTCACCGTTGTATTCCCAGGGAAGTGTACGT-----CCAGTGAGTGGGAAGCATTAGTTCAAAAT--------AGAGTCTGACTAGTGCCCAAGTCACA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 432797 268 - 9212255 TCC---GTCTCTCCCCTGCCTGG-GTTCCCTGTCTTCTTTTTCGC--ATTGTCTATTGTGCCTGCGTTTCTCCTGTGGTAGTGCTTT----GGGCTCCACACTGAGAAATGGCTGCTT--CTTGCCGGTATCTGTCC----------------CCTACCCGGCCCTCCAACGACTGCAAGGCTAGGGACCAGGGCTC-TCTGCCTCACCATTGTATTCCCAGGGAAGTGTATGT-----CCAGTGAATGGGAAGCATGAGTTCAGAATACTCAGAAAGAGTCTGACCAGTGCACAAGTCACA i saiBol1.JH378194 C 0 I 2 s cebCap1.NW_016107484v1 2848129 268 + 4466143 TCC---GTCTCTCCCCTGCCCGG-GTTGCCTGTCTTCCTTTTCGC--ATTGTCTATTGTGCCTGCGCTTCTCCTGTGGCAGTGCTTT----GGGCTccacactgagaaatggctgctt--cttgcctgtatctgtcc----------------cccacctggccctccaacaactgtaaggctagggaccagggctc-tctgccgcaccattgtattcccagGGAAGTGTATGT-----CCAGTGAATGGGAAGCATTAGTTCAGAATACTCAGAAAGAGTCTGACCAGTGCACAAGTCACA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1555528 261 + 5364348 TCC---ATCTCTCCCCTGCCCGG-GTTGCCTGTCTTCCTTTCCTC--TTTGTCTATTGTGCCTGCACTT---CTGTGGCAGCACTTT----GGGCTCCACACTGAGAAATGGCTGCTT--CTTGCCTGTATCTGTCC----------------CTGACCCAGCCCTCCAACAACTGCAAGGCTAGGGACCAGGGCTC-TCTGCCTCACCATTGCATTCCCAGGGAAGTGTATGT-----CCAGTGAATGGGAAGCATTAGTTCAAAATACGC----AGAGTCTGACCAGTGCATAAGTCACA i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124795842 266 + 151834684 TCC---ACCTCTTTCCCATCCAGTCTTTGCCAGATGCCCTCTCATAGGTCATAGGTCATACCTGCACTTCTCCAGCCTCAGAGTTCAGCAtctgcatcacagt------tgtctattt-acttgcctctacct-tcc----------------ctcgtttgggccgccagcatctgtaagggtggggacatggcttt-gcacccccatggttgtgtccccagGGAGGGCTTGGTGGCTGACGGCAAACAGGTAGCACTTGTTCAAAATTCTCAGAC----TCTGACCCATGC----GTCAGA i mm10.chr5 I 1115 C 0 s canFam3.chr26 33138296 232 - 38964690 TCTCAGACCTCTTCTCTGCCCCATCCTAGTTAGACGCCCTCATGG--GGTGCCCAGTGCACCTGTTCTTGCCCTGTAGCAGATCGTA----GCACCCCACATT--GAAATTGCCTATTAATTTGCCCCCATCTTTCCTACCCTCCCTCTTCCTCCTCTCTGGCCCACCAACACCTGTAAGCCTAGGAACCACCTAGCATCTGCCTCCCCCTCATGTTCCCAGGGAAGGGACT-------CCA------------------------------------TGCCT------------------- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e dasNov3.JH568189 815052 2183 - 1116856 I e otoGar3.GL873618 4273268 1487 + 7922563 I a score=6585.000000 s hg38.chr12_KI270834v1_alt 43622 2 + 119498 TT s panTro5.chr12 127329658 2 + 137163284 TT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680493 2 + 135337776 TT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193876 2 - 8369578 TT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97841976 2 + 106955855 TT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966811 2 + 133663169 TT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128214187 2 + 137757926 TT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10614083 2 - 16319837 TT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236529 2 + 20526591 TT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209459 2 + 128539186 GT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529620 2 + 6255621 TT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4585126 2 - 8658521 TT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114790595 2 + 124281992 TC i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2848397 2 + 4466143 TC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1555789 2 + 5364348 TC i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124796108 1 + 151834684 T- i mm10.chr5 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e dasNov3.JH568189 815052 2183 - 1116856 I e canFam3.chr26 33138528 0 - 38964690 C e otoGar3.GL873618 4273268 1487 + 7922563 I e saiBol1.JH378194 433065 2 - 9212255 I a score=426675.000000 s hg38.chr12_KI270834v1_alt 43624 42 + 119498 AGTGACTGTCCCGTGAACTAGAAGCATAAGCTCCAAATACTT s panTro5.chr12 127329660 42 + 137163284 AGTGACTGTCCCGTGAACAAGAAGCATAAGCTCCAAATACTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680495 42 + 135337776 AGTGACTGTCCCGTGAACAAGAAGCATAAACTCCAAATACTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193878 42 - 8369578 AGTGACTGTCCCGTGAACAAGAAGCATAAGCTCCAAATACTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97841978 42 + 106955855 AGTGACTGTCCCGTGAACAAGAAGCATGAGCTCCAAATACCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966813 42 + 133663169 AGTGACTGTCCCGTGAACAAGAAACGTAAGCTCCAAATACTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128214189 42 + 137757926 AGTGACTGTCCCGTGAACAAGAAACATAAGCTCCAAATACTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10614085 42 - 16319837 AGTGACTGTCCCGTGAACAAGAAACATAAGCTCCAAATACTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236531 42 + 20526591 AGTGACTGTCCCGTGAACAAGAAACATAAGCTCCAAATACTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209461 42 + 128539186 AGTGACTGTCCCGTGAATAAGAAGCATAAGCTCCAAATACTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529622 42 + 6255621 AGTGACTGTCCCGTGAACAAGAAACATAAGCTCCAAATACTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4585128 42 - 8658521 AGTGATTGTCCCGTGAACAAGAAGCATAAGCTCCAAATACTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114790597 42 + 124281992 AGTGACTGTACCGTGAACAAGAAGCGTAAGCTCCAAATACTT i calJac3.chr9 C 0 I 369 s saiBol1.JH378194 433067 42 - 9212255 AGTGACTGTACCGTGAACAAGAAGCATAAGCTCCAAATACTT i saiBol1.JH378194 I 2 C 0 s cebCap1.NW_016107484v1 2848399 42 + 4466143 AGTGACTGTACCGTGAACAAGAAGCACAAGCTCCAAATACTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1555791 42 + 5364348 GGTGACTGTACCGTGAACAAGAAGCATAAGCTCCAAATACTT i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124796109 10 + 151834684 ------------------------CCTGAGTTCC-------- i mm10.chr5 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e dasNov3.JH568189 815052 2183 - 1116856 I e canFam3.chr26 33138528 0 - 38964690 C e otoGar3.GL873618 4273268 1487 + 7922563 I a score=178024.000000 s hg38.chr12_KI270834v1_alt 43666 17 + 119498 GGCATCTGTCCAGTGAT s panTro5.chr12 127329702 17 + 137163284 GGCATCTGTCCAGTGAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680537 17 + 135337776 GGCATCTGTCCAGTGAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193920 17 - 8369578 GGCATCTGTCCAGTGAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842020 17 + 106955855 GGTATCTGTCCAGTGAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966855 17 + 133663169 GGTATGTGTCCAGTGAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128214231 17 + 137757926 GGTATGTGTCCAGTGAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10614127 17 - 16319837 GGTATGTGTCCAGTGAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236573 17 + 20526591 GGCATGTGTCCAGTGAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209503 17 + 128539186 GGTATGTGTCCAGTGAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529664 17 + 6255621 GGTATGTGTCCAGTGAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4585170 17 - 8658521 GGTATGTGTCCAGTGAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791008 17 + 124281992 GGCGTCTGTCCGGTGAT i calJac3.chr9 I 369 C 0 s saiBol1.JH378194 433109 17 - 9212255 GGTGTCTGTCCAGTGAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2848441 17 + 4466143 GGTGTCTGTCCAGTGAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1555833 17 + 5364348 GGTGTGTGTTCAGTGAT i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124796119 14 + 151834684 --TGTCTGTCCTGTGA- i mm10.chr5 C 0 C 0 s canFam3.chr26 33138528 14 - 38964690 ---CTCTGTCCAGTGGG i canFam3.chr26 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e dasNov3.JH568189 815052 2183 - 1116856 I e otoGar3.GL873618 4273268 1487 + 7922563 I a score=5780.000000 s hg38.chr12_KI270834v1_alt 43683 1 + 119498 -G s panTro5.chr12 127329719 1 + 137163284 -G i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680554 1 + 135337776 -G i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193937 1 - 8369578 -G i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842037 1 + 106955855 -G i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966872 1 + 133663169 -G i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128214248 1 + 137757926 -G i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10614144 1 - 16319837 -G i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236590 1 + 20526591 -G i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209520 1 + 128539186 -G i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529681 1 + 6255621 -G i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4585187 1 - 8658521 -G i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791025 1 + 124281992 -G i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 433126 1 - 9212255 -G i saiBol1.JH378194 C 0 I 121 s cebCap1.NW_016107484v1 2848458 1 + 4466143 -G i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1555850 1 + 5364348 -G i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4274755 1 + 7922563 -G i otoGar3.GL873618 I 1487 C 0 s canFam3.chr26 33138542 1 - 38964690 C- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124796133 0 + 151834684 C e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e dasNov3.JH568189 815052 2183 - 1116856 I a score=260282.000000 s hg38.chr12_KI270834v1_alt 43684 23 + 119498 AGTAGCATTAGTTCAAGGTACTC s panTro5.chr12 127329720 23 + 137163284 AGTAGCATTAGTTCAAGGTACTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680555 23 + 135337776 AGTAGCATTAGTTCAAGGTACTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193938 23 - 8369578 AGTAGCATTAGTTCAAGGTACTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842038 23 + 106955855 AGTAGCATTAGTTCAAGGTACTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966873 23 + 133663169 AGTAGCGTTAGTTCAAGGTACTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128214249 23 + 137757926 AGTAGCGTTAGTTCAAGGTACTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10614145 23 - 16319837 AGTAGCGTTAGTTCAAGGTACTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236591 23 + 20526591 AGTAGCGTTAGTTCAAGGTACTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209521 23 + 128539186 AGTAGCGTTAGTTCAAGGTACTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529682 23 + 6255621 AGTAGCGTTAGTTCAAGGTACTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4585188 23 - 8658521 AGTACCATTAGTTCAAGGTACTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791026 23 + 124281992 GGCAGCGTTAGTTCAAGGCATTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 433248 23 - 9212255 AGTAGCGTTAGTTCAAGGCATTC i saiBol1.JH378194 I 121 C 0 s cebCap1.NW_016107484v1 2848459 23 + 4466143 AGTAGCGTTAGTTCAAGGCATTC i cebCap1.NW_016107484v1 C 0 I 245 s aotNan1.NW_018491581v1 1555851 23 + 5364348 CGTAGCGTTAGTTCAAGGCATTC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4274756 23 + 7922563 GGCAGTGCTAGTTCAGAGTGCTC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124796133 5 + 151834684 --------------AAGGT---- i mm10.chr5 C 0 C 0 s canFam3.chr26 33138543 23 - 38964690 AGGAGTGTTCATTCAAAGTACTC i canFam3.chr26 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e dasNov3.JH568189 815052 2183 - 1116856 I a score=125193.000000 s hg38.chr12_KI270834v1_alt 43707 16 + 119498 -----GGTATCTGTCCAGTGA s panTro5.chr12 127329743 16 + 137163284 -----GGTATCTGTCCAGTGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680578 16 + 135337776 -----GGTATCTGTCCAGTGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193961 16 - 8369578 -----GGTATCTGTCCAGTGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842061 15 + 106955855 -----GGTATCTGTCCAGTG- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966896 16 + 133663169 -----GATATCTGTCCAGTAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128214272 16 + 137757926 -----GATATCTGTCCAGTAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10614168 16 - 16319837 -----GATATCTGTCCAGTAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236614 16 + 20526591 -----GGTATCTGTCCAGTAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209544 16 + 128539186 -----GATATTTGTCCAGTAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529705 16 + 6255621 -----GATATCTGTCCAGTAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4585211 16 - 8658521 -----GATATCTGTCCAGTAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791049 16 + 124281992 -----GGCGTCTGTCCATTGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 433271 16 - 9212255 -----GGTGTCTGTCCAGTGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2848727 16 + 4466143 -----GGTGTCTGTCCAGTGA i cebCap1.NW_016107484v1 I 245 C 0 s aotNan1.NW_018491581v1 1555874 16 + 5364348 -----CGCGTCTGTCCAGTGA i aotNan1.NW_018491581v1 C 0 I 1612 s otoGar3.GL873618 4274779 3 + 7922563 ----------------AGA-- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124796138 15 + 151834684 ------GTACCTAGCAAGCGC i mm10.chr5 C 0 C 0 s canFam3.chr26 33138566 21 - 38964690 AGTTAAGTTGCTGTCCAGGGA i canFam3.chr26 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e dasNov3.JH568189 815052 2183 - 1116856 I a score=375788.000000 s hg38.chr12_KI270834v1_alt 43723 40 + 119498 AGGAGCAGCATTGAAGTACTCACTATGGCCTCCGTGCAGT s panTro5.chr12 127329759 40 + 137163284 AGGAGCAGCATTGAAGTACTCACTATGGCCTCCGTGCAGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680594 40 + 135337776 AGGAGCAGCATTGAAGTACTCACTATGGCCTCCGTGCAGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8193977 40 - 8369578 AGGAGCAGCATTGACGTACTCACTATGGCCTCCGTGCAGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842076 40 + 106955855 ATGAGTAGCATTGAAGTACTCACTATGGCCTCCGTGCAGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966912 40 + 133663169 AGGAGCAACATTGAAGTACTCACTATGGCCTCCTTGCGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128214288 40 + 137757926 AGGAGCAGCATTGAAGTACTCACTATGGCCTCCTTGCGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10614184 40 - 16319837 AGGAGCAGCATTGAAGTACTCACTATGGCCTCCTTGCGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236630 40 + 20526591 AGGAGCAGCATTGAAGTACTCACTATGGCCTCCTTGCGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209560 40 + 128539186 AGGAGCAGCATTGAAGTACTCACTATGGCCTCCGTGCGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529721 40 + 6255621 AGGAGCAGCATTGAAGTACTCACTATGGCCTCCTTGCGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4585227 40 - 8658521 AGGAGCAGCATTGAAGTACTTACTATGGCCTCCGTGCAGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791065 40 + 124281992 AGGAGCAGCATTAAAGTACTCACTGTGGCTTCCATGCAGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 433287 40 - 9212255 GGGAGCAGCATTAAAGTACTCACTATGGCTTCCATGCAGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2848743 40 + 4466143 AGGAGCAGCATTAAAGTACTCACTATGGCTTCCGTGCAGT i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4274782 39 + 7922563 AGGAGCAGCATGGCA-TGCTCACTCTGCTACCTGTCCAGC i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9449849 741 - 31815103 I e mm10.chr5 124796153 0 + 151834684 C e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e dasNov3.JH568189 815052 2183 - 1116856 I e canFam3.chr26 33138587 0 - 38964690 C e aotNan1.NW_018491581v1 1555890 1612 + 5364348 I a score=1618050.000000 s hg38.chr12_KI270834v1_alt 43763 144 + 119498 A--CAAGCAACATTAGTTCATTTCAAGCATGTGCCAGAACTGCTTTTGTATTTCCGTGTTTATGATTCAAGTGAAATCA-ACCATGATTTC----CTGCAGGTCAACTTCCAACCTTGTATGACTTTCATTTTGATAACAAACGGAATCAA s panTro5.chr12 127329799 144 + 137163284 A--CAAGCAACATTAGTTCAATTCAAGCATGTGCCAGAACTGCTTTTGTATTTCCGTGTTTATGATTCAAGTGAAATCA-ACCATTATTTC----CTGCAGGTCAACTTCCAACCTTGTATGACTTTCATTTTGATAACAAACGGAATCAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680634 144 + 135337776 A--CAAGCAACATTAGTTCATTTCAAGCATGTGCCAGAACTGCTTTTGTATTTCCGTGTTTATGATTCAAGTGAAATCA-ACCATTATTTC----CTGCAGGTCAACTTCCAACCTTGTATGACTTTCATTTTGATAACAAACGGAATCAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8194017 144 - 8369578 A--CAAGCAACATTAGTTCATTTCAAGCATGTGCCAGAATTGCTTTTGTATTTCCGTGTTTATGATTCAAGTGAAGTCA-ACCATGATTTC----CTGCAGGTCAACTTCCAACCTTGTATGACTTTCATTTTGATAACAAACGGAATCAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842116 144 + 106955855 A--CAAGCAACATTAGTTCATTTCAAGCACGTGCCAGAACTGCTTTTGTATTTCCGTGTTGATGATTCAAGTGAGATCA-ACCATTATTTC----CTATAGGTCAACTTCCAACCTTGTATGACTTTCATTTTGATAACAAACGGAATCAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123966952 144 + 133663169 A--CACGCAACATTAGTTCATTTCAAGCATGTGCCAGAACCGGTTTTACATTTCCATGTTTATGATTGAAGTGAAATCA-ACCATTATTTC----CTGCAGGTCAACTTCCAACCTTGTATGACTTTCATTTTGATGACAAACGGAATCAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128214328 144 + 137757926 A--CACGCAACATTAGTTCATTTCAAGCATGTGCCAGAACCGGTTTTACATTTCCATGTTTATGATTGAAGTGAAATCA-ACCATTATTTC----CTGCAGGTCAACTTCCAACCTTGTATGACTTTCATTTTGATGACAAACGGAATCAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10614224 144 - 16319837 A--CACGCAACATTAGTTCATTTCAAGCATGTGCCAGAACCGGTTTTACATTTCCATGTTTATGATTGAAGTGAAATCA-ACCATTATTTC----CTGCAGGTCAACTTCCAACCTTGTATGACTTTCATTTTGATGACAAACGGAATCAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236670 144 + 20526591 A--CACGCAACATTAGTTCATTTCAAGCATGTGCCAGAACCGGTTTTACATTTCCATGTTTATGATTGAAGTGAAATCA-AGCATTATTTC----CTGCAGGTCAACTTCCAACCTTGTATGACTTTCATTTTGATGACAAACGGAATCAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209600 144 + 128539186 A--CACGCAACATTAATTCATTTCAAGCATGTGCCAGAACCGGTTTTACATTTCCATGTGTATGATTGAAGTGAAATCA-ACCATTATTTC----CTGCAGGTCAACTTCCAACCTTGTATGACTTTCATTTTGATGACAGACGGAATCAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529761 144 + 6255621 A--CACGCAACATTAGTTCATTTCAAGCATGTGCCAGAACCGGTTTTACATTTCCATGTTTATGATTGAAGTGAAATCA-ACCATTATTTC----CTGCAGGTCAACTTCCAACCTTGTATGACTTTCATTTTGATGACAAACGGAATCAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4585267 144 - 8658521 A--CACGCAACATTAGTTCATTTCAAGCATGTGCCAGAACTGGTTTTACATTTCCATGTTTATGATTCAAGTGAAATCA-ACCATTATTTC----CTGCAGGTCAACTTCCAACCTTGTACGACTTTCATTTTGATAACAAACGGAATCAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791105 146 + 124281992 AAGCAAGCAACATTAGTTCATTTCAAGCATGTGCCAGAACTGGTTTTGTATTTCCACGTCTATGATCCGAATGAAATCA-ACCATTATCTC----CTGCAGGTCAACTTCCAACTTTGTATGACTTTCATTTTGATAACAAACGGAATCAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 433327 146 - 9212255 AAGCAAGCAACATTCGTTCATTTCAAACATGTGCCAGAACTGGTTTTGTATTTCCATGTCTATGATCCAAGTGAAATCA-ACCATTATCTC----CTGCAGGTCAACTTCCAACTTTGTATGACTTTCACTTTGATAACAAACGGAATCAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2848783 146 + 4466143 AAGCAAGCAACATTAGTTCATTTCAAGCATGTGCCAGAACTGGTTTTGTATTTCCATGTCTATGATCCAAGTGAAATCA-ACCATTATCTC----CTGCAGGTCAACTTCCAACTTTGTATGACTTTCATTTTGATAACAAACGGAATCAA i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4274821 143 + 7922563 A--GCTGGGCCCGCTGTTCATGCCAAGCAAACACCAGAATTGATTCTGTATTTTAA-GTCTGTGATCACAGTGAAACAG-GCTATATTGCA----TTGCAGGTCACCTACCAACCCTGTACGACTTTCACTTTGATAATACACAGAATCGA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124796153 137 + 151834684 ----------AGACAGCTCATTCTAG--ATGTGTCAGAACCGATCTCAT-CCTCCAGGTCTATGACCAAAGCAACGTGG-ATCCTTGTCCCCCCACCGCAGGGCATCTTCCCTCCCTGTACGACTTTCATTTCGATGCCAAGCGGAACCAC i mm10.chr5 C 0 C 0 s canFam3.chr26 33138587 142 - 38964690 A--CAAGTAGCATTAGTCCATCTC---CATGTGCTGGAGCTAATTCTGTAGTTCCATGTCTATGACGAAAGTGAAGTTAGACCATTATTCC----CTGCAGGTCACCTCCCAACCTTGTATGACTTTCATTTTGATTCCACACGGAAAAAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 817235 124 - 1116856 A--TGAGTAGCATTAATTCATTTCAAGCAGGTG-------------------TCTGTGTCTATGA-CAAAATGTAACAG-AATGTTATTTA----CTACAGGTCATCTTCCAACATTGTATGACTTTCATTTTGATCCCAAGCGGGAGCAG i dasNov3.JH568189 I 2183 C 0 e micMur3.chr21 9449849 741 - 31815103 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e aotNan1.NW_018491581v1 1555890 1612 + 5364348 I a score=1123273.000000 s hg38.chr12_KI270834v1_alt 43907 76 + 119498 TGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTCATCAACATCCTGGGTAAGT s panTro5.chr12 127329943 76 + 137163284 TGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTCATCAACATCCTGGGTAAGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680778 76 + 135337776 TGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTCATCAACATCCTGGGTAAGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8194161 76 - 8369578 TGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTCATCAACATCCTGGGTAAGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842260 76 + 106955855 TGGGTCCCATGGAGTAAGTTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTTATCGACATCCTGGGTAAGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123967096 76 + 133663169 TGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTTATCGACATCCTGGGTAAGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128214472 76 + 137757926 TGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATTCCCCCGAGAGGAAATTTATCGACATCCTGGGTAAGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10614368 76 - 16319837 TGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTTATCGACATCCTGGGTAAGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236814 76 + 20526591 TGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTTATCGACATCCTGGGTAAGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209744 76 + 128539186 TGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCACGCCCCCGAGAGGAAATTTATCGACATCCTGGGTAAGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529905 76 + 6255621 TGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTTATCGACATCCTGGGTAAGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4585411 76 - 8658521 TGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTTATCGACATCCTGGGTAAGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791251 76 + 124281992 TGGGTGCCATGGAGCAAATTAGTTCCAGAGTATATTCATGTCCCCGAGAGGAAATTTGTTGATATCCTGGGTAAGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 433473 76 - 9212255 TGGGTGCCATGGAGCAAATTAGTTCCAGAGTATATTCATGTCCCTGAGAGGAAATTTGTCGATATCCTGGGTAAGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2848929 76 + 4466143 TGGGTGCCATGGAGCAAATTAGTTCCAGAGTATATTCATGTCCCCGAGAGGAAATTTGTCGATATCCTGGGTAAGT i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9450590 76 - 31815103 TGGATCCCGTGGAGTAAGCTAGTCCCAGAGTACGTCCACTCTCACGAGAGGAAGTTCATCGACATCCTGGGTGAGT i micMur3.chr21 I 741 I 523 s otoGar3.GL873618 4274964 76 + 7922563 TGGGTCCCATGGAGTAAGTTAGTTCCAGAGTACGTCTACTCTCCAGAGAGGAGATTTATCGACATCCTGGGTAAGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124796290 76 + 151834684 TGGATTCCATGGAACAAGCTCGTTCCTGAATACGTGCACAGCCACGAGAAGAAATTTGTCGACATCCTGGGTGTGT i mm10.chr5 C 0 C 0 s canFam3.chr26 33138729 76 - 38964690 TGGATACCGTGGAACAAACTGGTTCCTGAATATATTCACAGCCAGAAGAGTAAATTTATTGACATCCTGGGTAAGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 817359 76 - 1116856 TGGGTCCCATGGAGTCTATTAGTTCCACAGTATATCCATTCTTTTGAGAGGAAATTTATTGACATCCTGGGTAAGT i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e aotNan1.NW_018491581v1 1555890 1612 + 5364348 I a score=1323072.000000 s hg38.chr12_KI270834v1_alt 43983 127 + 119498 CAGAGTCAAATCCTTGTTCCTGGGTTTAG-----------GAGTGTGTGATACTCGCTCTAGGAGGAGGCAAAGAAGATCCCATGGCTTCTCTGGTACTCTAAGTCCCACGCAGAGAGCTGGTAGAGAAGAATTGAAG s panTro5.chr12 127330019 127 + 137163284 CAGAGTCAAATCCTTGTTCCTGGGTTTAG-----------GAGTGTGTGATACTTGCTCTAGGAGGAGGCAAAGAAGATCCCATGGCTTCTCTGGTACTCTAAGTCCCACGCAGAGAGCTGGTAGAGAAGAATTGAAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680854 127 + 135337776 CAGAGTCAAATCCTTGTTCCTGGGTTTAG-----------GAGTGTGTGATACTCGCTCTAGGAGGAGGCAAAGAAGATCCCATGGCTTCTCTGGTACTCTAAGTCCCACGCAGAGAGCTGGTAGAGAAGAATTGAAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8194237 127 - 8369578 CAGAGTCAAATCCTTGTTCCTGGGTTTAG-----------GAGTGTGTGATACTCGCTCTAGGAGGAGGCAAAGAAGATCCCATGGCTTCTCTGGTACTCTAAGTCCCACGCAGAGAGCTGGTAGAGAAGAATTGAAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842336 127 + 106955855 TAGGGTCAAATCCTTGTTCCTGGGTTTAG-----------GAGTGTTTGATCCTTGCTCTAGGAGGAGGCGAAGAAAATCCCATGGCTTCTCTGGTACTCTAAGTTCCACACAGAGAGCTGGTAGAGAAGAATTGAAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123967172 127 + 133663169 CATAGTCAAATCCTTATTCCTGGGTTTAG-----------GAGTGTGTGATCCTCACTCTAGGAGAAGGCAGAGAAGATCTCATGGCTTCTCTGGTACTCGAAGTCCCACGCAGAGAGCTGGTAGAGAAGAATTGAAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128214548 127 + 137757926 CATAGTCAAATCCTTATTCCTGGGTTTAG-----------GAGTGTGTGATCCTCACTCTAGGAGAAGGCAGAGAAGATCTCATGGCTTCTCTGGTACTCGAAGTCCCACGCAGAGAGCTGGTAGAGAAGAATTGAAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10614444 127 - 16319837 CATAGTCAAATCCTTATTCCTGGGTTTAG-----------GAGTGTGTGATCCTCACTCTAGGAGAAGGCAGAGAAGATCTCATGGCTTCTCTGGTACTCGAAGTCCCACGCAGAGAGCTGGTAGAGAAGAATTGAAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12236890 127 + 20526591 CATAGTCAAATCCTTGTTCCTGGGTTTAG-----------GAGTGTGTGATCCTCACTCTAGGAGGAGGCAGAGAATATCCCATGGCTTCTCTGGTACTCTGAGTCCCACGCAGAGAGCTGGTAGAGAAGAATTGAAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209820 127 + 128539186 CATAGTCAAATCCTTGTTCCTGGGTTTAG-----------GAGTGTGTGATCCTCACTCTAGGAGGAGGCAGAGAAGATCCTATGGCTTCTCTGGTACTCTAAGTCCCACGCAGAGAGCTGGTAGAGAAGAATTGAAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 529981 127 + 6255621 CATAGTCAAATCCTTGTTCCTGGGTTTAG-----------GAGTGTGTGATCCTCACTCTAGGAGGAGGCAGAGAATATCCCATGGCTTCTCTGGTACTCTGAGTCCCACGCAGAGAGCTGGTAGAGAAGAATTGAAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4585487 127 - 8658521 CATAGTCAAATCCTTGTTCCTGGGTTTAG-----------GAGTGTGTGATCCTCACTCTAGGAGGAGGCAGAGAAGATCCCATGGCTCCTGTGGTCCTCTAAGTCCCATGCAGAGAGCTGGTAGAGAAGAATTGAAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791327 127 + 124281992 CGTAGTCAAACCCTTGTTCCTGGTTTTAG-----------GAGTGTGTGATCCTCGCTCCGGGAGGAGGCGAGGAAGATCCAGTGGCTTCTCTGTTACTCTAAGTCCCACGCAGAGATCTGGGAGAGAAGAACTGAAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 433549 127 - 9212255 CAGAGTCCAACCATCGTTCCTGGGTTTAG-----------GAGTATGTGCTCCTCACTCCGGGAGGAGGCGAGGAAGATCCCGTGGCTTCTCTGGTACTCTAAGTCCCATGCAGAGAGCTGGGAGAGAAGAACTGAAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2849005 127 + 4466143 CAGAGTCAAACCCTGGTTCCTGGGTTTAG-----------GAGTGTGTGATCCTCGCTCCGGGAGGAGGCGAGGAAGATCCCATGGCTTCTCTGGTACTCTAAGTCCCACACAGAGAGCTGGGAGAGAAGAACTGAAG i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4275040 124 + 7922563 --GGGTCCAGCCCCTGCTCCCAGGTTTAA-----------GACTATGTGATCCTTGTTCTGAGAGGA-GTAATGGAGACCTTGTAGTATCTCTGGCACCCTGAGTCCTACCCAGGGAGCTGGTGGAGAGAAACTGAGA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124796366 119 + 151834684 --------AAGCACTGCTCTCGGTCTTAGCTCCCCCGCGTGAATGAGTG----------TGAAAGGCTGTGAGAAGATGACTGTGGCCTCATTGGCAACCC-AGTGCCAGCCAGGGAATTGGTTGGGAGCAACTAGAG i mm10.chr5 C 0 I 12 s canFam3.chr26 33138805 126 - 38964690 GAGAACTGAACCTCTGTACTTGG-TTTAA-----------CAGTGGAGGGTTCTCGTTCCATGAGGAAGTAAGACAGATCTGGTGGCCTCTGTGGCACCCTGAGTCCCACCCAGAGAGCTGCTTTGGAGAAACTGAAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 817435 113 - 1116856 GAGAATCAAATCCTC-TGCCTTGGTTTGA-----------GGGCATTTGATTCTTGTTCAGCAAGGAAGTAAGAACAATTATGTGGCCTCTCCCATACC--AAGTTGTGCCCAG-----------AGCAGAATCGAAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9450666 523 - 31815103 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e aotNan1.NW_018491581v1 1555890 1612 + 5364348 I a score=353073.000000 s hg38.chr12_KI270834v1_alt 44110 35 + 119498 AGGGTGAGCTGTGGGCCCTCCTGGGCATGGAGGGT s panTro5.chr12 127330146 35 + 137163284 AGGGTGAGCTGTGGGCCCTCCTGGGCATGGAGGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125680981 35 + 135337776 AGGGTGAGCTGTGGGCCCTCCTGGGCATGGAGGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8194364 35 - 8369578 AGGGTGAGCTGTGGGCCCTCCTGGGCATGGAGGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842463 35 + 106955855 AGGGTGAGCCGTGGGCCCTCCTGGGCATGGAGGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123967299 35 + 133663169 AGGGTGAGCCGTGGGCCCTCCTGGGCACAGAGGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128214675 35 + 137757926 AGGGTGAGCCGTGGGCCCTCCTGGGCACAGAGGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10614571 35 - 16319837 AGGGTGAGCCGTGGGCCCTCCTGGGCACAGAGGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12237017 35 + 20526591 AGGGTGAGCCGTGGGCCCTCCTGGGCACAGACGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209947 35 + 128539186 AGGGTGAGCCATGGGCCCTCCTGGGCATAGATGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 530108 35 + 6255621 AGGGTGAGCCGTGGGCCCTCCTGGGCACAGAGGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4585614 35 - 8658521 AGGGTGAGCTGTGGGCCCTCCTGGGCACAGAGGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791454 32 + 124281992 AGGGTGAACTGTGGGCCCTCCTGGGCACA---GGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 433676 35 - 9212255 AGGGTGAACTGTGGGCCCTCCTGGGCACAGAGGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2849132 35 + 4466143 AGGCTGAATTGTGGGCCCTCCTGGGCACAGAGGGT i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4275164 30 + 7922563 AGAGGGAGCTGTGGGCCCTGCTG-----AGAGGGC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33138931 30 - 38964690 AGAACAAGCCATGGGCCTTGCCA-----AGAAACT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 817548 30 - 1116856 AATGTGAGCTGTAGGCCTTGCCA-----AAGGGGT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9450666 523 - 31815103 I e mm10.chr5 124796485 12 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e aotNan1.NW_018491581v1 1555890 1612 + 5364348 I a score=2066726.000000 s hg38.chr12_KI270834v1_alt 44145 225 + 119498 GGCCGCTTTGGTATT-TTT-GTCAGCTGCTGGCTCTGAGCATCT-TCCG-TGGCTCTGCCTCTCAGCTCTTTCCCC-AGCAGGCCGATCCCCACAGGCAG---ATGAGATGCCGTTTCGCCTCCCCTGGCCTTTCCCTGGGCTC-TCTTCAGTCCACAGAGCTGGCTGGGT------------------GGGGACTAGACGGCAACGAA--CGAGGCAGTGTTTTATAAAGGGCGCTGGCTTGAAAAGCTGTGT s panTro5.chr12 127330181 225 + 137163284 GGCCGCTTTGGTATT-TTT-GTCAGCTGCTGGCTCTGAGCATCT-TCCG-TGGCTCTGCCTCTCAGCTCTTTCCCC-AGCAGGCCGATCCCCACAGGCAG---ATGAGATGCCGTTTCGCCTCCCCTGGCCTTTCCCTGGGCTC-TCTTCAGTCCACAGAGCTGGCTGGGT------------------GGGGACTAGACAGCAACAAA--TGAGGCAGTGTTTTATAAAGGGCGCTGGCTTGAAAAGCTGTGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125681016 225 + 135337776 GGCCGCTTTGGTATT-TTT-GTCAGCTGCTGGCTCTGAGCATCT-TCCG-TGGCTCTGCCTCTCAGCTCTTTCCCC-AGCAGGCCGATCCCCACAGGCAG---ATGAGATGCCGTTTCGCCTCCCCTGGCCTTTCCCTGGGCTC-TCTTCAGTCCACAGAGCTGGCTGGGT------------------GGGGACTAGACAGCAACAAA--TGAGGCAGTGTTTTATAAAGGGCGCTGGCTTGAAAAGCTGTGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8194399 225 - 8369578 GGCCGCTTTGGTATT-TTT-GTCAGCTGCTGGCTCTGAGCATCT-TCCG-TGGCTCTGCCTCTCAGCTCTTTCCCC-AGCAGGCCGATCCCCACAGGCGG---ATGAGATGCCGTTTCGCCTCCCCTGGCCTTTCCCTGGGCTC-TCTTCAGTCCACAGAGCTGGCTGGGT------------------GGGGACTAGACAGCAACGAA--CGAGGCAGTGTTTTATAAAGGGCGCTGGCTTGAAAAGCTGTGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842498 225 + 106955855 GGTCCCTTTGGTATT-TTT-GTCAGCCGCTGGCTCTGAGCATCT-TCCA-TGGCTCTGCCTCTCAGCTCTTTCCCC-AGCAGGCCGATCCCCACAGGCGG---ATGAGATGCTGTTTCGCCTCCCCTGGCCATTCCCTGGGCTC-TCTCCAGTCCACAGAGCTGGCTGGGT------------------GGGGACCAGACAGCAGTGAA--CGAGGCAGTGTTTTATGAAGGGCGCTGGCTTGAAAAGCTGTGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123967334 213 + 133663169 GGCCCCTTTGGTATT-TTT-GTCAGCTGCTGGCTCTGAGTATCT-TCCG-TG-------------GCTCTTTCCCC-AGCAGGCCGATCCCCGCAGGTGG---ATGAGATGCTGTTTCGCCTCCCCTTGCCTTTCCCTAGGCTCATCTTCAGTCCACAGAGCTGTCTGGGT------------------GGGGACCAAACGGCAAGGAA--TGAGGCAGTGTTTTATAAAGGGCGCTCACTTGAAAAGCTGTGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128214710 213 + 137757926 GGCCCCTTTGGTATT-TTT-GTCAGCTGCTGGCTCTGAGTATCT-TCCG-TG-------------GCTCTTTCCCC-AGCAGGCCGATCCCCACAGGTGG---ATGAGATGCTGTTTCGCCTCCCCTTGCCTTTCCCTAGGCTCATCTTCAGTCCACAGAGCTGTCTGGGT------------------GGGGACCAAACGGCAAGGAA--TGAGGCAGTGTTTTATAAAGGGCGCTCACTTGAAAAGCTGTGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10614606 213 - 16319837 GGCCCCTTTGGTATT-TTT-GTCAGCTGCTGGCTCTGAGTATCT-TCCG-TG-------------GCTCTTTCCCC-AGCAGGCCGATCCCCACAGGTGG---ATGAGATGCTGTTTCACCTCCCCTTGCCTTTCCCTAGGCTCATCTTCAGTCCACAGAGCTGTCTGGGT------------------GGGGACCAAACGGCAAGGAA--TGAGGCAGTGTTTTATAAAGGGCGCTCACTTGAAAAGCTGTGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12237052 213 + 20526591 GGCCCCTTTGGTATT-TTT-GTCAGCTGCTGGCTCTGAGTATCT-TCCG-TG-------------GCTCTTTCCCC-AGCAGGCCGATCCCCACAGGTGG---ATGAGATGCTGTTTCGCCTCCCCTTGCCTTTCCCTAGGCTCATCTTCAGTCCACAGAGCTGTCTGAGT------------------GGGGACCAAACAGCAAGGAA--TGAGGCAGTGTTTTATAAAGGGCGCTCACTTGAAAAGCTGTGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119209982 213 + 128539186 GGCCCCTTTGGTATT-TTT-GTCAGCTGCTGGCTCTGAGTATCT-TCCG-TG-------------GCTCTTTCCCC-AGCAGGCCGATCCCCACAGGTGG---ATGAGATGCTGTTTCGCCTCCCCTTGCCTTTCCCTAGGCTCATCTTCAGTCCACAGAGCTGTCTGGGT------------------GGGGACCAAATGGCAAGGAA--TGAGGCAGTGTTTTATAAAGGGTGCTCACTTGAAAAGCTGTGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 530143 213 + 6255621 GGCCCCTTTGGTATT-TTT-GTCAGCTGCTGGCTCTGAGTATCT-TCCG-TG-------------GCTCTTTCCCC-AGCAGGCCAATCCCCACAGGTGG---ATGAGATGCTGTTTCGCCTCCCCTTGCCTTTCCCTAGGCTCATCTTCAGTCCACAGAGCTGTCTGGGT------------------GGGGACCAAACAGCAAGGAA--TGAGGCAGTGTTTTATAAAGGGCGCTCACTTGAAAAGCTGTGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4585649 213 - 8658521 GGCCCCTTTGGTATT-TTT-GTCAGCTATTGGCTCTGAGTATCT-TCCG-TG-------------GCTCTTTCCCC-AGCAGGCCGATCCGCACAGGTCT---ATGAAATGCTGTTTCGCCTCCCCTTGCCTTTCCCTAGGCTCATCTTCAGTCCGCAGAGCTGTCTGGGT------------------GGGGACCAAACGGCAAGGAA--TGAGGCAGTGTTTTATAAAGGGCGCTCACTTGAAAAGCTGTGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791486 220 + 124281992 CGCCCCCTTGGTATT-TTT-GTCAGCTGCTGGCTCTGAGCATCT-TCTG-TGGCTGTGCCTCCCAGCTCTTTTCTC-AGCAGGCTGAGCCCCGTGGGCGG---ATGAGATGCTGTCTCACCTCCCCTCGCCTTTCCCTGGGCTC-TGTTCAGTCCACAGAGCTGGCTGGGT------------------GGAGACCAAGCGGCAA------CGAGGCAGAATTTTGTAAAGGGCGCTGGCTTG-GAAGCTGTGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 433711 224 - 9212255 GGTCCCCTTGGTATT-TTT-GTCAGCTGCTGGCTCTGAGCATCT-TCTG-TGGCTGTGCCTTCCAGCTCTTTCCCC-AGCAGGCTGAGCCCCACGGGTAG---ATGAGATGCTGTCTCGCCTCCCTTCGCCTTTCCCTGGGCTC-TGTTCAGTCCACAGAGCTGGCTGCGT------------------GGAGACCAAGCAGCAATGAT--CGAGGCAGAATTTTGTAAAGGGCGCTGGCTTG-GAAGCTGTGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2849167 224 + 4466143 GGCCCCCTTGGTATT-TTT-GTCAGCTGCTGGCTCTGAGCATCT-TCTG-TGGCTGTGCCTCCCAGCTCTTTCCCC-AGCAGGCTGAGCCCCACGGGCAG---ATGAGATGCTGTCTCGCCTCCCCTCGCCTTTCCCTGGGCTC-TGTTCAGTCCACAGAGCTGGCTGGGT------------------GGAGACCAAGTGACAACAAT--TGAGGCAGAATTTTATAAAGGGCGTTGGCTTG-GAAGCTGTGT i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4275194 239 + 7922563 AGCACCTTAGGTCCT-TTCAGTCTGCTGCTGGCTCTGAGCATCT-TGGGATGGTTGCACCTCTCAGCTC-CTCCCC-TGCTGGCAGGGCCCCGCACGCAT-------GGTGCTGCCTTGTTTTCCTTCATGTTTCCTTAGGCTC-CCATCAGCCCTCAGAGCTGGCTGGGCATGGGAAGGACTCAAGAAAGGGATGGAACAG-AGTGAA--CAAGGCAGTATTTTGTAAACAGTGCTGCCTTGCAGAATTGTGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124796497 216 + 151834684 GGCCACTTGGGATTC-TTC-TTCGTCCCCTGCCTCTGAGCACCTCTGTG-TGGCTGTGCCCT---GGGCTTTTCTA-GGTAAGCTGATGGTCACGG--------TGGCCTGTT-CTCCACTTTCCTTCGCATTTCCTAGGGCGT---TACAG-CCACAGAGCTGGCTGGGT------------------CCAGGGAGGGCAGGAGGGAAGCCACAGCATCGGTTCACAAGGGGCGTGAACCTGAGGAGTCCTGT i mm10.chr5 I 12 I 31 s canFam3.chr26 33138961 221 - 38964690 GGCATTCCTGATTCTGTTT-CTGTGCTACTGGCTCTGAGCATCT-GCAGATGTGTGTGACTCTTAGCTG-CCACCT-GACAGGTGGGGT------GGTGG--TAGAACGGGCTGCCCTGCCTCCCCTCACAGTCCCCTGGCAGC-TGGCTGGCCAGGGGAAGGAACCAAGG------------------AAGAGAGAAAGAGGAATGAG--CGAGGCAGTATTGTGTGAGAGGTGCTGCCTCACAAGGCTGTGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 817578 226 - 1116856 GGCATTTTGGCCCCT-TTT-ATATGCTGCTGGCTCTGTGCATCT-CCAGATGTCTGTGATGTTCAGCCCTCTCCCTGGGCAAGCTGAGGCTAGTAGGTGGCCTGAAGGGTGCAATTTTGCTTTGCC--ACATTTCCATGGGTTC-CCTTCAGGCC--AGAGCTGGCTGGGC-----------------CTGGGAAAGTACCAAGAGGAA--CAAGGCAGCGTTTTTTAACAGGTGCTGCCTTA-AAAGTCATGT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9450666 523 - 31815103 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e aotNan1.NW_018491581v1 1555890 1612 + 5364348 I a score=494578.000000 s hg38.chr12_KI270834v1_alt 44370 68 + 119498 GCCATGGGCGTTTACCTACTGAACCACACTTAGAATGCACCCCTCTGGCTGTTCAGATAAAATATAGG s panTro5.chr12 127330406 68 + 137163284 GCCATGGGCGTTTGCCTACTGAACCACACTTAGAATGCACCCCTCTGGCTATTCAGATAAAATATGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125681241 68 + 135337776 GCCATGGGCGTTTGCCTACTGAACCACACTTAGAATGCACCCCTCTGGCTATTCAGATAAAATATGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8194624 68 - 8369578 GCCATGGGCATTTACATACTGAACCACACTTAGAATGCACCCCTCTGGCTATTCAGATAAAATATGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842723 68 + 106955855 GCCATGGGAGTTTACACGCTGAACCACACTTAGAATCCACCCCTCTGGCTATTCAGATAAAATATGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123967547 57 + 133663169 GCCATGGGCGTTTATATACTGAGCCACATTTAGAATGCACCCCTCTGGCTATTTAGA----------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128214923 57 + 137757926 GCCATGGGCGTTTATATACTGAGCCACATTTAGAATGCACCCCTCTGGCTATTTAGA----------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10614819 57 - 16319837 GCCATGGGCGTTTATATACTGAGCCACATTTAGAATGCACCCCTCTGGCTATTTAGA----------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12237265 57 + 20526591 GCCATGGGCGTTTATATACTGAGCCACATTTAGAATGCACCCCTCTGGCTATTTAGA----------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119210195 57 + 128539186 GCCATGGGCGTTTATATACTGAGCCACATTTAGAATGCACCCCTCTGGCTATTTAGG----------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 530356 57 + 6255621 GCCATGGGCGTTTATATACTGAGCCACATTTAGAATGCACCCCTCTGGCTATTTAGA----------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4585862 57 - 8658521 GCCATGGGCGTTTATATACTGAGCCACGTTTAGAATGCATCCCTCTGGCTGTTTAGA----------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791706 44 + 124281992 ACCATGGGCGTTTATAGACCGAGCTGCATTTAGAATGCACCCCT------------------------ i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 433935 44 - 9212255 ACCGTGGGCGTTTATAGACCGAGCCACATTCAGAATGCACCCCT------------------------ i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2849391 44 + 4466143 ACCATGGGCGTTTATAGACTGAGTCACATTTATAATGCGCCCCT------------------------ i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4275433 68 + 7922563 GCTGTGGGCATTTATATACTGAGACATACTTTAAATGTGTTCCTCTGGGTATTTAGATGAAATATGGG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33139182 57 - 38964690 CCCTTGGATGTTTATGTGTCCAACTATATTTTTAATGTACTCCTCTGGCTATTTAGA----------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 817804 68 - 1116856 CTTGTAGACGATTGTATATTGAGCCCTTTTTTAAATGCAACCCTTTGGCCATTTAGATGAAATGTTAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9450666 523 - 31815103 I e mm10.chr5 124796713 31 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I e aotNan1.NW_018491581v1 1555890 1612 + 5364348 I a score=435241.000000 s hg38.chr12_KI270834v1_alt 44438 54 + 119498 CTGGCTATTCAGGTAAAATATGGGCTGAAT-AATTTCACAAAGCATGTGTCTGAC s panTro5.chr12 127330474 54 + 137163284 CTGGCTATTCAGGTAAAATATGGGCTGAAT-AATTTCACAAAGCATGTGTCTGAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125681309 54 + 135337776 CTGGCTATTCAGGTAAAATATGGGCTGAAT-AATTTCACAAAGCATGTGTCTGAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8194692 54 - 8369578 CTGGCTATTCAGGTAAAATATGGGCTGAAT-AATTTCACAAAGCATGTGTCTGAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842791 54 + 106955855 CTGGCTATTCAGGTAAAATATGGGCTGAAT-AATTTCACAAAGCATGTGTCTGAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123967604 41 + 133663169 -------------TAAAATACGGGCTGAAT-AATTTCACAAAGCATGTGTCTGAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128214980 41 + 137757926 -------------TAAAATATGGGCTGAAT-AATTTCACAAAGTATGTGTCTGAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10614876 41 - 16319837 -------------TAAAATATGGGCTGAAT-AATTTCACAAAGCATGTGTCTGAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12237322 41 + 20526591 -------------TAAAATATGGGCTGAAT-AATTTCACAAAGCATGTGTCTGAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119210252 41 + 128539186 -------------TAAAATATGGGCTGAAT-AATTTCACAAAGCATGTGTCTGAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 530413 41 + 6255621 -------------TAAAATATGGGCTGAAT-AATTTCACAAAGCATGTGTCTGAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4585919 41 - 8658521 -------------TAAAATATGGGCTGAAT-AATTTCACAAAGCATGTGTCTGAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791750 54 + 124281992 CTGGCTATTTAGATAAAATATGGGCTGAAT-AATTTCACAAAGCTTGTGCCTGAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 433979 54 - 9212255 TTGGCTATTTAGATAAAATGTGGGCTGAAT-AATTTCACAAAGCTTGTGCCCGAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2849435 54 + 4466143 CTGGCTATTTAGATAAAATATGAGTTGAAT-AATTTCACAAAGCTTGTGCCTGAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1557502 54 + 5364348 CTGGCTATTTAGATAAAATATGGGCTGAAT-AATTTCACAAAGCTTGTGCCTGAC i aotNan1.NW_018491581v1 I 1612 C 0 s otoGar3.GL873618 4275501 30 + 7922563 ------------------------CCAAAT-ATGTTCATGGAGCATGTAAATGAT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33139239 27 - 38964690 --------------------------GAAT-AGTGGCACACGGCTGGTGTGGGT- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 817872 28 - 1116856 ------------------------CTGGGTGGATTTTACA---CAAGTGTTGGAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9450666 523 - 31815103 I e mm10.chr5 124796713 31 + 151834684 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I a score=1023301.000000 s hg38.chr12_KI270834v1_alt 44492 97 + 119498 TTTGGTCCATTGAGCTTACGGAGTGAGACATCCCTGTTTTCTCGGGAGCCCATCAGGGTTGAAACCTGCCAGTGCAAGAGG------GAGCCAGACCCGATGC s panTro5.chr12 127330528 97 + 137163284 TTTGGTCCATTGAGCTTACGGAGTGAGACATCCCTGTTTTCTCGGGAGCCCATCAGGATTGAAACCTGCCAGTGCAGGAGG------GAGCCAGACCCGATGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125681363 97 + 135337776 TTTGGTCCATTGAACTTACGGAGTGAGACATCCCTGTTTTCTCGGGAGCCCATCAGGATTGAAACCTGCCAGTGCAGGAGG------GAGCCAGACCCAATGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8194746 97 - 8369578 TTTGGTCCATTGAGCTTGTGGAGTGAGACATCCCTGTTTTCTCGGGAGCCCATCAGGGTTGAAACCTGCCAGTGCAGGAGG------GAGCCAGACGCGATGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842845 97 + 106955855 TTTGGTCCATTGAGCTTATGGAGTGAGACGTCCCTGTTTCCTCGGGAGCCCATCAGGATTGAAACCTGCCAGGGCAGGAAG------GAGCCAGACCTGATGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123967645 97 + 133663169 TTTGGTCCATTGAACTTGTAGAGTGGGACGTCCCTGTTTTCTCAGGAGTCCATCAGGATGAAAATATGCCAGTGCAGGAGG------GAGCCGCACGTGATGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128215021 97 + 137757926 TTTGGTCCATTGAACTTGTAGAGTGGGACGTCCCTGTTTTCTCAGGAGTCCATCAGGATGAAAATATGCCAGTGCAGGAGG------GAGCCGCACGTGATGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10614917 97 - 16319837 TTTGGTCCATTGAACTTGTAGAGTGGGACGTCCCTGTTTTCTCAGGAGTCCATCAGGATGAAAATATGCCAGTGCAGGAGG------GAGCCGCACGTGATGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12237363 97 + 20526591 TTTGGTCCATTGAACTTGTAGAGTGGGACGTCCCTGTTTTCTCAGGAGTCCATCAGGATGAAAATATGCCAGTGCAGGAGG------GAGCCGCACGTGATGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119210293 97 + 128539186 TTTGGTCCATTGAACTTGTAGAGTGGGACGTCCCTGTTTTCTCAGGAGTCCATCAGGATGAAAACATGCCAGTGCAGGCGG------GAGCCACATGTGATGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 530454 97 + 6255621 TTTGGTCCATTGAACTTGTAGAGTGGGACGTCCCTGTTTTCTCAGGAGTCCATCAGGATGAAAATATGCCAGTGCAGGAGG------GAGCCGCACATGATGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4585960 97 - 8658521 TTTGGTCCATTGAGCTTGTAGAGTGGGACGTCCCTGTTTTCTCAGGAGTCCATCAGGATGAAAACATGCCAGTGCAGGAGG------GAGCCACACGTGATGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791804 96 + 124281992 TTTGGCCCATTGAGCTTATAGAGTGAGATGGCCCTATTTTCTCAGGAG-CCATCAGGATTAAAATCTGACAGTGCAGGAGG------GAGTCACACCTGATGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 434033 97 - 9212255 TTTGGTCCATTAAGCTTATAGAGTGAGATGCCCCTGTTTTCTCAGGAGCCCATTAGGATTAAAACCTGACAGTGCAGCAGG------GAGCCAGACCCGATGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2849489 97 + 4466143 TTTGGTCCATTGAGCTTATAGAGTGAGACGTCCCTGTTTCCTCAGGAGCCCATCAGGATTAAAACCTGACAGTGCAGGAGG------GAACCAGACCCGATGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1557556 97 + 5364348 TTTGGTCCATTGAGCTTATAGAATGAGACGTCCCTGTTTTCTCAGAAGCCCATCAGGATTAAAACCTGACAGTGTAGGAGG------GAGCCAGACCCGATGC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4275531 78 + 7922563 TTGGGTCCATTGTGCTTATAGAGTG------------------AGGAGCCCATCAGGATTGAAAACTGCTAATGTAGAATT------GAGCCAGACTTGACT- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124796744 101 + 151834684 TCTGGTACACCGTGCTAAGGTAGCAAGACACCTGCATTTTCTCAGAACCCCTCTGGGATTGAAACTTTTC--TACAGGAGAGTGGGTGGGCAGCACCTGGCTG i mm10.chr5 I 31 C 0 s canFam3.chr26 33139266 84 - 38964690 TCTGGTC-------------GGATGAGATGTACTCATTTCTTCAGGAACCAGTCAGGATTAAAAACGACCAGTATAGGAGT------GAGCTGGACCTGGCTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 817900 65 - 1116856 TTTGGTGCATTGTTCTTATAGCATGAGCAGACTG---GTTCACAGGAACCAATCAGGATGAAAAACTT----------------------------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9450666 523 - 31815103 I e proCoq1.NW_012154285v1 6699176 1298 - 9870158 I a score=369843.000000 s hg38.chr12_KI270834v1_alt 44589 26 + 119498 TGTGGCTTCACTGTCTCTTCGGAGGA s panTro5.chr12 127330625 26 + 137163284 TGTGGTTTCACTGTCTCTTCGGAGGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125681460 26 + 135337776 TGTGGTTTCACTGTCTCTTCGGAGGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8194843 26 - 8369578 TGTGGTCTCACTGTCTCTTCGGAGGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842942 26 + 106955855 TGTGGTTTCACGGTTTCTTCAGAGGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123967742 26 + 133663169 TGTGGTTTCACTGTCTCTTCAGAGGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128215118 26 + 137757926 TGTGGTTTCACTGTCTCTTCAGAGGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615014 26 - 16319837 TGTGGTTTCACTGTCTCTTCAGAGGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12237460 26 + 20526591 TGTGGTTTCACTGTCTCTTCAGAGGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119210390 26 + 128539186 TGTGGTTTCACTGTCTCTTCAGAGGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 530551 26 + 6255621 TGTGGTTTCACTGTCTCTTCAGAGGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4586057 26 - 8658521 TGTGGTTCCACTGTCTCTTCAGAGGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791900 26 + 124281992 TGTGGTTTCACAGTCTCTTCAGAGGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 434130 26 - 9212255 TGTGGTTTCACTGTCTCTTCAGAGGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2849586 26 + 4466143 TGTGGTTTCACTGTCTCTTCAGAGGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1557653 26 + 5364348 TGTGGTTTCACTGTCTCTTCAGAGGA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6700474 26 - 9870158 TGTGGTTTCACTGTCTCTTCAGGGGA i proCoq1.NW_012154285v1 I 1298 C 0 s otoGar3.GL873618 4275609 20 + 7922563 TGTGGTTTCATTCTATCTTT------ i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124796845 20 + 151834684 TGCTGAGACGCTGCCTT----GAG-- i mm10.chr5 C 0 I 1 s canFam3.chr26 33139350 26 - 38964690 CGTGGTTTCATTCTCTCTTTAGAGGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 817965 26 - 1116856 TGTGGTTATACACACTCTTCAGAGGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9450666 523 - 31815103 I a score=142962.000000 s hg38.chr12_KI270834v1_alt 44615 11 + 119498 AGGTGTTGCTC s panTro5.chr12 127330651 11 + 137163284 AGGTGTTGCTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125681486 11 + 135337776 AGGTGTTGCTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8194869 11 - 8369578 AGGTGTTGCTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842968 11 + 106955855 AGGTGGTGCTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123967768 11 + 133663169 AGGTGTTGGTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128215144 11 + 137757926 AGGTGTTGGTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615040 11 - 16319837 AGGTGTTGGTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12237486 11 + 20526591 AGGTGTTGGTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119210416 11 + 128539186 AGGTGTTGGTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 530577 11 + 6255621 AGGTGTTGGTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4586083 11 - 8658521 AGGTGTTGGTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791926 11 + 124281992 AGGTGTTGGTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 434156 11 - 9212255 AGGTGTTGGTC i saiBol1.JH378194 C 0 I 324 s cebCap1.NW_016107484v1 2849612 11 + 4466143 AGGTGTTGGTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1557679 11 + 5364348 AAGTGTTGGTC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9451189 11 - 31815103 AGGTGTTGGTC i micMur3.chr21 I 523 C 0 s proCoq1.NW_012154285v1 6700500 11 - 9870158 AGGTGTTGGTC i proCoq1.NW_012154285v1 C 0 C 0 s mm10.chr5 124796866 10 + 151834684 AGCGGTTTCC- i mm10.chr5 I 1 C 0 s canFam3.chr26 33139376 11 - 38964690 AGTCGTCGGGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 817991 10 - 1116856 -AGTCGTGGTC i dasNov3.JH568189 C 0 C 0 e otoGar3.GL873618 4275629 0 + 7922563 C a score=567271.000000 s hg38.chr12_KI270834v1_alt 44626 37 + 119498 AGGAAGTTAAATCCCGCAGGGGTCTG-AGTGATGTCAG s panTro5.chr12 127330662 37 + 137163284 AGGAAGTTAAATCCTGCAGGGGTCTG-AGTGGTGTCAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125681497 37 + 135337776 AGGAAGTTAAATCCTGCAGGGGTCTG-AGTGGTGTCAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8194880 37 - 8369578 AGGAAGTTAAATCCCGCAGGGGTCTG-AGTGATGTCAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97842979 37 + 106955855 AGGAAGTTAAATCCCGCAGGGGTCTG-AGTGATGTCAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123967779 37 + 133663169 AGGAAGTTAAATCCCGCAGGGGTCTG-ACTGATGTCAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128215155 37 + 137757926 AGGAAGTTAAATCCCGCAGGGGTCTG-ACTGATGTCAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615051 37 - 16319837 AGGAAGTTAAATCCCGCAGGGGTCTG-ACTGATGTCAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12237497 37 + 20526591 AGGAAGTTAAATCCCGCAGGGGTCTG-AGTGATGTCAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119210427 37 + 128539186 AGGAAGTTAAATCCCGCAGGGGTCTG-AGTGATGTCAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 530588 37 + 6255621 AGGAAGTTAAATCCCGCAGGGGTCTG-AGTGATGTCAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4586094 37 - 8658521 AGGAAGTTAAATCCCGCAGGGGTCTG-AGTGATGTCAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791937 37 + 124281992 AGGAAGTTAAATCCCGCAGAGGTCTG-AGTGATGTCAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 434491 37 - 9212255 aagaaGTTAAATCCCGCAGGGGTCTG-AGTGATGTCAG i saiBol1.JH378194 I 324 C 0 s cebCap1.NW_016107484v1 2849623 37 + 4466143 AGGAAGTTAAATCCCGCAGGGGTCTG-AGTGATGTCAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1557690 37 + 5364348 AGGAAGTTAAATCCCACAGGGGTCTG-AGTGATGTCAG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9451200 37 - 31815103 GGGAAACCAAATCCTGCAGGGGTCTG-AGGGGCGTAAG i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6700511 37 - 9870158 AGGAAACCAAATCCTGCAGGGGTCCG-AGGGATGTAAG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4275629 28 + 7922563 AGTAAATAAGATCTTTCAGGAGTCTG----------AG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124796876 37 + 151834684 AGGCAATCAG-TCCTGCAGGGGCCAGCGGTGGTGTGAG i mm10.chr5 C 0 I 899 s canFam3.chr26 33139387 37 - 38964690 AGGAAACCAAACCCTGGAGGGATGTG-GCTGATGTTAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 818001 37 - 1116856 AGGAAACCATATCCTGCAGGTATACG-AACAACATAAT i dasNov3.JH568189 C 0 C 0 a score=441037.000000 s hg38.chr12_KI270834v1_alt 44663 30 + 119498 CAACAAAGAAGCTGAGTTTTT-GATATCCT-G s panTro5.chr12 127330699 31 + 137163284 CAACAAACAAGCTGAGTTTTT-AATATCCTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125681534 31 + 135337776 CAACAAACAAGCTGAGTTTTT-AATATCCTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8194917 31 - 8369578 CAACAAAGAAGCTGAGTTTTT-AGTATCCTGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97843016 31 + 106955855 CAACAGAGAAGCTGAGTTTTT-AATATCCTGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123967816 31 + 133663169 CAACAGAGAAGCTGAGTTTTT-AATATCCTGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128215192 31 + 137757926 CAACAGAGAAGCTGAGTTTTT-AATATCCTGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615088 31 - 16319837 CAACAGAGAAGCTGAGTTTTT-AATATCCTGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12237534 31 + 20526591 CAACAGAGAAGCTGAATTTTT-AATATCCTGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119210464 31 + 128539186 TAACAGAGAAGCTGAGTTTTT-AATATCCTGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 530625 31 + 6255621 CAACAGAGAAGCTGAGTTTTT-AATATCCTGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4586131 31 - 8658521 CAACAGAGAAGCTGAGTTTTT-AATATCCTGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114791974 31 + 124281992 CCGCAGAGAAGCTGAGTTTTG-AATATCCTGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 434528 31 - 9212255 CCACGGAGAAGCTGAGTTTTG-AATATCCTGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2849660 31 + 4466143 CCACGGAGAAGCTGAGTTTTG-AATATCCTGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1557727 31 + 5364348 CCACAGAGAAGCTGAGTTTTG-AATATCCTGA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9451237 30 - 31815103 CAACAGAGAAGTTGAGTTTTT-AACATCCTG- i micMur3.chr21 C 0 I 652 s proCoq1.NW_012154285v1 6700548 30 - 9870158 CAACAGAGAAGTTGAGTTTTT-AACATCCTG- i proCoq1.NW_012154285v1 C 0 I 652 s otoGar3.GL873618 4275657 30 + 7922563 CAACAGGGAAGCTGAGTTTTT-AATATCCTG- i otoGar3.GL873618 C 0 I 1 s canFam3.chr26 33139424 30 - 38964690 CAATGGGGAAACGGAGTTTTT-AATATCCTG- i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 818038 31 - 1116856 CAAGAGAGAAGTTAAATTTTTAAATGTCCTG- i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124796913 899 + 151834684 I a score=292466.000000 s hg38.chr12_KI270834v1_alt 44693 26 + 119498 -GCATAAGTCAGAATTGCATCTCAAAA s panTro5.chr12 127330730 26 + 137163284 -GCATAAGTCAGAATTGCATCTGAAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125681565 26 + 135337776 -GCATAAGTCAGAATTGCATCTGAAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8194948 26 - 8369578 -GCATAAGTCAGAATTGCATCTTAAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97843047 26 + 106955855 -GCATAAGTCAGAATTGCATCTTAAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123967847 26 + 133663169 -GTATAAGTCAGAATTGCATCTTAAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128215223 26 + 137757926 -GTATAAGTCAGAATTGCATCTTAAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615119 26 - 16319837 -GTATAAGTCAGAATTGCATCTTAAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12237565 26 + 20526591 -GTATAAGTCAGAATTGCATCTTAAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119210495 26 + 128539186 -GTATAAGTCAGAATTGCATCTTAAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 530656 26 + 6255621 -GTATAAGTCAGAATTGCATCTTAAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4586162 26 - 8658521 -GTGTAAGTCAGAATTGCATCTTAAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792005 26 + 124281992 -GTATAAGTCAGAACTGCACCTTCCAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 434559 26 - 9212255 -GTATAAGTCAGAACTGCAGCTTCAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2849691 26 + 4466143 -GTATAAGTCAGAACTGCACCTTCAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1557758 26 + 5364348 -GTATAAGTCAGAACTGCACCTTCAGA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4275688 26 + 7922563 -GTATAAACCAGAATTAGATGTTAAAA i otoGar3.GL873618 I 1 I 163 s canFam3.chr26 33139455 26 - 38964690 -CTATAAATCAGAATTGGATATTAAAA i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 818069 26 - 1116856 ACTAGCAATTAGAATGGAAATTAAAA- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9451267 652 - 31815103 I e mm10.chr5 124796913 899 + 151834684 I e proCoq1.NW_012154285v1 6700578 652 - 9870158 I a score=938395.000000 s hg38.chr12_KI270834v1_alt 44719 94 + 119498 CCGGCTTGGGCGTTCTAACCCTGGACTGTGGTGATGGTCGCGCCGCTGCAGAACTGTGCCAAAGTCAATCAGTTATACACTTC----------------------------------------AATGGGTGA--------------------------------------AT s panTro5.chr12 127330756 94 + 137163284 ACGGCTTGGGtgttctaaccctggactgtggtgatgaccgcgctgctgtagaactgtgccaaagtcaataaattatacactta----------------------------------------aatgggtga--------------------------------------at i panTro5.chr12 C 0 C 0 s panPan2.chr12 125681591 94 + 135337776 ACGGCTTGGGtgttctaaccctggactgtggtgatgaccgcgctgctgtagaactgtgccaaagtcaataaattatacactta----------------------------------------aatgggtga--------------------------------------at i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8194974 94 - 8369578 TCGGCTCGGGtgttctacacctggactgtggtgatgatcgcactgctgtagaactgtgccaaagtcaataaattatacactta----------------------------------------aatgggtga--------------------------------------at i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97843073 94 + 106955855 ACGGCTTGGGtgttctaaacctgaactgtggtgatgatcgcactgctgtagaactgtgccaaagtccataaattatacactta----------------------------------------aatgggtga--------------------------------------at i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123967873 94 + 133663169 ACAGCTTGGGtgttctaaacctggactgtggtgaggatcgcacggccgtagaactgtgccaaagtcaataaattatacactta----------------------------------------aatgggtga--------------------------------------CT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128215249 94 + 137757926 ACAGCTTGGGtgttctaaacctggactgtggtgaggatcgcacggctgtagaactgtgccaaagtcaataaattatacactta----------------------------------------aatgggtga--------------------------------------CT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615145 94 - 16319837 ACAGCTTGGGtgttctaaacctggactgtggtgaggatcgcacggccgtagaactgtgccaaagtcaataaattatacactta----------------------------------------aatgggtga--------------------------------------CT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12237591 94 + 20526591 ACAGCTTGGGtgttctaaacctggactgtggtgaggatcgcactgccgtagaactgtgccaaagtcaataaattatacactta----------------------------------------aatgggtga--------------------------------------CT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119210521 94 + 128539186 ACAGCTCGGGtgttctaaacgtggactgtggtgaggatcgcactgctgtagaactgtgccaaagtcaacaaattatacactta----------------------------------------aatgggtga--------------------------------------CT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 530682 94 + 6255621 ACAGCTTGGGtgttctaaacctggactgtggtgaggatcgcactgctgtagaactgtgccaaagtcaataaattatacactta----------------------------------------aatgggtga--------------------------------------CT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4586188 94 - 8658521 ACAGCTTAGGtgttctaaacctggactgtggtgaggatcgcactgctgtagaactgtgccaaagtcaataaattatacactta----------------------------------------aatgggtga--------------------------------------CT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792031 79 + 124281992 ACAGCTTGGGTGTTCTCAAGCTGGACTGCGGTGATGC-------------AGACTGTACC--AGTCATGACATTATACACTTA----------------------------------------AGTGGGTGA--------------------------------------AC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 434585 92 - 9212255 ACAGCTTGGGTGTTCTAAACCTGGGCTGCGGTGATGCTCACGCTGCTGTAGAACTGTGCG--AGTCATGACATTATACACTTA----------------------------------------AATGGGTGA--------------------------------------AC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2849717 89 + 4466143 ACAGCTTGGGCGTTCTAACCCTGGGCCGC-GTGATGCTGGCACTGCTGTAGAA--GTGCC--AGTCATGGCATTATACACTTA----------------------------------------AATGGACGA--------------------------------------AC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1557784 94 + 5364348 ACAGCTTGGGtgttctaaacctggactgtggtgatgctcgcactgctgtagaactgtgccggagtcatgacattatacactta----------------------------------------aatgggtga--------------------------------------aC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4275877 172 + 7922563 CTAGTTTGGGCAttttaaacctggactgtggtaacaattatatagccttataactgtatcagactcatcaaattgtatacctaaaatggaatgcaagttataccttgataaagctgTCAGAATAATGGCTGGTATAACAAGGTCCTCCTCAGAACAGGTTTCTCCATACTTT i otoGar3.GL873618 I 163 C 0 s canFam3.chr26 33139481 95 - 38964690 ACAGTTTGGGTGCTCCAAATCTAgactatggcagggattccacagctgtagaaatgtgtcagactcaccagattagacccttaa---------------------------------------aatgggtga--------------------------------------gt i canFam3.chr26 C 0 I 279 s dasNov3.JH568189 818095 81 - 1116856 ACAGTTTGGatgttctaaacctggattg-ggtgatgat-------------aagtgtatcaaactccttgaattatacacttaa---------------------------------------aatagctga--------------------------------------at i dasNov3.JH568189 C 0 I 85 e micMur3.chr21 9451267 652 - 31815103 I e mm10.chr5 124796913 899 + 151834684 I e proCoq1.NW_012154285v1 6700578 652 - 9870158 I a score=324522.000000 s hg38.chr12_KI270834v1_alt 44813 30 + 119498 GTTTCTGAGGTCATGTCTTGG-C-CTTTGCTC s panTro5.chr12 127330850 30 + 137163284 gttTCTGAGGTCATGTCTTGT-C-CTTTGCTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125681685 30 + 135337776 GTTTCTGAGGTCATGTCTTGT-C-CTTTGCTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8195068 30 - 8369578 gttTCTGAGGTCATGTCTTGG-C-CTTTGCTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97843167 30 + 106955855 ATTTCTGAGGTCACGTCTTGG-C-CTTTGCTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123967967 30 + 133663169 GTTTCTGAGGTCATGTCTTGG-C-CTTTGCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128215343 30 + 137757926 GTTTCTGAGGTCATGTCTTGG-C-CTTTGCTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615239 30 - 16319837 GTTTCTGAGGTCATGTCTTGG-C-CTTTGCTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12237685 30 + 20526591 GTTTCTGAGGTCATGTCTTGG-C-CTTTGCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119210615 30 + 128539186 GTTTCTGAGGTCATGTCTTGG-C-CTTTGCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 530776 30 + 6255621 GTTTCTGAGGTCATGTCTTGG-C-CTTTGCTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4586282 30 - 8658521 GTTTCTGAGGTCATGTCTTGG-C-CTTTGCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792110 29 + 124281992 GTTTCTGAGGGCGTGCCTTGG---CTCTGCTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 434677 29 - 9212255 GTTTCTGAGGGCATGCCTTGG---CTTTGCTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2849806 29 + 4466143 GTTTCCAAGGGCATGCCTTGG---CTTCGCTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1557878 29 + 5364348 ATTTCTGAGGGCATGCCTTGG---CTTTGCTG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4276049 30 + 7922563 GTTTTTGGAATCACAACTGAG-G-TTGTGCTG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33139855 31 - 38964690 ATTTTCAAGGCCATGTCTTGGGT-TTTTGCTG i canFam3.chr26 I 279 C 0 s dasNov3.JH568189 818261 31 - 1116856 GTGTTCAGGGTCATGTCTTGG-CTTTTTGTTG i dasNov3.JH568189 I 85 C 0 e micMur3.chr21 9451267 652 - 31815103 I e mm10.chr5 124796913 899 + 151834684 I e proCoq1.NW_012154285v1 6700578 652 - 9870158 I a score=1077999.000000 s hg38.chr12_KI270834v1_alt 44843 103 + 119498 CTGTTTTTTATGGGATTTGTGGGGTTCTAG-GACAACTCCATGTTGCCCCCAGTGCTCACCCTAT-TGGAGTTGCTGAGATGCCCCTGTTCCTAAT-GTCTACTTT s panTro5.chr12 127330880 103 + 137163284 CTGTTTTTTATGGGATTTGTGGGGTTCTAG-GACAACTCCATGTTGCCCCCAGTGCTCACCCTAT-TGGAGTTGCTGAGATGCCCCTGTTCCTAAT-GTCTACTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125681715 103 + 135337776 CTGTTTTTTATGGGATTTGTGGGGTTCTAG-GACAACTCCATGTTGCCCCCAGTGCTCACCCTAT-TGGAGTTGCTGAGATGCCCCTGTTCCTAAT-GTCTACTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8195098 103 - 8369578 CTGTTTTTTATGGGATTTGTGGGGTTCTAG-GACAACTCCATGTTGCCCCCAGTGCTCACCCTAT-TGGAGTTGCTGAGATGCCCCTGTTCCTAAT-GTCTATTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97843197 103 + 106955855 CTGTTTTTTATGGGATTTGTGGGGTTCTAC-GACAACTCCACGTTGCCCCTAGTGCTCACCCTAT-TGGAGTTGCTGAGATGTCCCTGTTCTTAAT-GTCTATTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123967997 103 + 133663169 CTGTTTTTTATGGGATCTGTGGGGTTCTAG-GACAATTCCACGTTGCCCCCAGTGCTCACCCTAC-TGGAGCTACTGAGATGCCCCTGTTGTTAAT-ATCTATTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128215373 102 + 137757926 CTGTTTTTTATGGGATCTGTGGGGTTCTAG-GACAATTCCACGTTGCCCCCAGTGCTCACCCTAC-AGGAGCTACTGAGATGCCCCTGTT-TTAAT-ATCTATTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615269 103 - 16319837 CTGTTTTTTATGGGATCTGTGGGGTTCTAG-GACAATTCCACGTTGCCCCCAGTGCTCACCCTAC-AGGAGCTACTGAGATGCCCCTGTTGTTAAT-ATCTATTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12237715 103 + 20526591 CTGTTTTTTATGGGATCTGTGGGGTTCTAG-GACAATTCCACGTTGCCCCCAGTGCTCACCCTAC-TGGAGCTACTGAGATGCCCCTGTTGTTAAT-ATCTATTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119210645 103 + 128539186 CTGTTTTTTATGGGATCTGTGGGGTTCTAG-GACAATTCCACGTTGCCCCCAGTGCTCACCCTAC-TGGAGCTACTGAGATGCCCCTGTTGTTAAT-ATCTATTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 530806 103 + 6255621 CTGTTTTTTATGGGATCTGTGGGGTTCTAG-GACAATTCCACGTTGCCCCCAGTGCTCACCCTAC-TGGAGCTACTGAGATGCCCCTGTTGTTAAT-ATCTATTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4586312 103 - 8658521 CTGTTTTTTATGGGATCTGTGGGATTCTAG-GACAATTCCACATTGCCCCCAGTGCTCACCCTAC-TGGAGCTGCTGAGATGCCCCTGTTGTTAAT-ATCTATTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792139 101 + 124281992 CTGTTCTTTACGGGATTTGTGGGATTCTAG-GACAACCCCAAATTA--CCAAGAGCCCACCATAT-TGGAGCTGCTATGATGCCCCTATTCTTAAC-ATCTATGCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 434706 102 - 9212255 CTGTTTTTTATGGGATCTGTGGGATTCTAGAAACAACCCCAAATTG--CCGAGTGCTCACCCTAT-TGGAGCTGCTGTGATGCCCCTATTCTTAAT-ATCTATTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2849835 100 + 4466143 CTGTTTTTTATGGGATTTGTGGGATTCTAG-GACAACCCCAAATTG--CCGAGTGCTTACCCGAT-CGGAGCTGCTGTGATG-CCTTATTCTTAAT-ATCTATTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1557907 101 + 5364348 CTGTCTTTTATGGGATTTGTGGGATTCTAG-GACAACCCCAAATTG--CCGAGTGCTCACCCTGT-TGGAGCTGCTGTGATGCCCCTATTCTTAAT-ATCTGTTTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4276079 101 + 7922563 ATGCTTTTTAGGGGATTTGAGGGATTTTGT-GG-AACTCCAAGTTG--CCAAATGCTCACCCTGTCTGGACTTCCTGCAATGTTTTCCTTCTTAAT-GTGTTTTTA i otoGar3.GL873618 C 0 I 2 s mm10.chr5 124797812 89 + 151834684 CTACCTCTTCTTGGATGCATGGGGCTCTGC-G-------TGCACTG--CCCAGTGCCCAAGTGCT-TGGCATTCCTGTGACACCCAGATTCT------TCTGTCTT i mm10.chr5 I 899 I 2 s canFam3.chr26 33139886 100 - 38964690 ATGCTTTTTATGAGATGTTTGGGATTCCGT-GA-AGCTCCAAGTTC--CCACCTGCTCACCCTG--TGGCATTTCTATGATGCTCCTGTGCTTTATCATGTTCCTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 818292 89 - 1116856 ATGCTTTCTATGGATTGTGTGAAGCCCCAG-G-----------TTG----TAGAGCTTTCCCTCTTTGGAGTTCCTGTGATGCTCACATTCTTAAT-ACATTTTTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9451267 652 - 31815103 I e proCoq1.NW_012154285v1 6700578 652 - 9870158 I a score=3007264.000000 s hg38.chr12_KI270834v1_alt 44946 157 + 119498 ---AGTTCACACAGTGGATACCACTCGGACTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAACGTAAGTCAT s panTro5.chr12 127330983 157 + 137163284 ---AGTTCACACAGTGGATACCACTCGGACTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAACGTAAGTCAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125681818 156 + 135337776 ---AGTTCACACAGTGGATACCACTCGGACTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTA-TTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAACGTAAGTCAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8195201 157 - 8369578 ---AGTTCACACAGTGGATACCACTCGGACTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCGTCAAAAATCTGAGTGAAGAAACTAACGTAAGTCAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97843300 157 + 106955855 ---AGTTCACACAGTGGATACCACTCGGACTACCTGGATATTGGAACAAATGGTTAACATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAACGTAAGTCAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123968100 157 + 133663169 ---AGTTCACACAGTGGATACCACTCGGTCTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAACGTAAGTCAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128215475 157 + 137757926 ---AGTTCACACAGTGGATACCACTCGGTCTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAACGTAAGTCAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615372 157 - 16319837 ---AGTTCACACAGTGGATACCACTCGGTCTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAACGTAAGTCAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12237818 157 + 20526591 ---AGTTCACACAGTGGATACCACTCGGTCTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTATTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAACGTAAGTCAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119210748 157 + 128539186 ---AGTTCACACAGTGGATACCACTCGATCTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAACGTAAGTCAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 530909 157 + 6255621 ---AGTTCACACAGTGGATACCACTCGGTCTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAACGTAAGTCAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4586415 157 - 8658521 ---AGTTCACACAGTGGATACCACTCGGTCTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAACGTAAGTCAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792240 157 + 124281992 ---AGTTCACACAGTGGATACCACTCGGACTACCTGGATATTGGAACAAATGGTCAAAATTAAGCAACCTGTTATTTTCGTTGGTGAATCTGGCACTTCAAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAGGAAACTAACGTAAGTCAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 434808 157 - 9212255 ---AGTTCACACAGTGGATACCACTCGGACTACCTGGATATTGGAACAAATGGTCAAAATTAAGCAACCTGTTATTTCTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTAAAAAATCTGAGTGAGGAAACTAACGTAAGTCAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2849935 157 + 4466143 ---AGTTCACACAGTGGACACCACTCGGACTACCTGGATATTGGAACAAATGGTCAAAATTAAGCAACCTGTTATTTCTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAGGAAACCAATGTAAGTCAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558008 157 + 5364348 ---AGTTCACACAGTGGATACCACTCGGACTACCTGGATATTGGAGCAAATGGTCAAAATTAACCAACCTGTTATTTCTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAGGAAACTAACGTAAGTCGT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9451919 157 - 31815103 ---AGTTCACACAGTGGACACCACCCGGACTACCTGGATATTGGGACAGATGGTTAAAATTAAGCACCCTGTTATTCTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAACTTCCTCAGAAATCTGAACGAAGAAACGAACGTAAGTCAT i micMur3.chr21 I 652 I 637 s proCoq1.NW_012154285v1 6701230 157 - 9870158 ---AGTTCATACAGTGGATACCACCCGGACTACCTGGATATTGGGACAAATGGTTAAAATTAAGCACCCCGTTATTTTTGTTGGTGAATCTGGCACTTCGAAGACAGCCACTACCCAGAACTTCCTCAAAAATCTGAACGAAGAAACAAACGTAAGTCAT i proCoq1.NW_012154285v1 I 652 C 0 s otoGar3.GL873618 4276182 157 + 7922563 ---AGTTCATACTGTGGACACAACTCGGACTACTTGGATATTGGGACAAATGGTTAAAATTAAACAAGCTGTTATTTTTGTTGGAGAATCTGGCACTTCTAAGACAGCCACGACCCAGACCTTCCTCAGAAATCTGAATGAAGACATATATGTGAGTCAT i otoGar3.GL873618 I 2 C 0 s mm10.chr5 124797903 157 + 151834684 ---AGTTCACACAGTGGATACCACCCGCACCACCTGGATCCTGGAGCAGATGGTTAAAATCAAGCACCCTGTTCTTTTTGTGGGTGAATCCGGCACTTCTAAGACAGCCACTACCCAGAACTTCCTCAAAAACCTGAACGAGGAGACCAATGTAAGTGTC i mm10.chr5 I 2 C 0 s canFam3.chr26 33139986 157 - 38964690 ---AGTTCATACGGTGGATACGACACGTACTACCTGGGTGCTGGAAGAAATGGTCAAGATCAGGCAACCTATTCTCTTGGTCGGTGAATCTGGCACCTCCAAGACAGCCACCACCCAGAACTTCCTCAAAAATCTGAATGAAGACATCACCGTAAGTTAC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 818381 160 - 1116856 ATTAGTTCATACAGTGGATACAATTCGCACAACCTGGATGTTGGAACAAATGGTTAAAATTAAGCACCCTGTTATTTTGGTTGGTGAATCTGGCACCTCTAAGACAGCTACTACCCAGAACTTCCTCAAAAGCCTGAATGAAGAGACTAATGTAAGTCAT i dasNov3.JH568189 C 0 C 0 a score=531537.000000 s hg38.chr12_KI270834v1_alt 45103 37 + 119498 TATTCAtatgaattatctattgctgtgtaacaaatta s panTro5.chr12 127331140 37 + 137163284 TATTCAtatgaattatctattgctgtgtaacaaatta i panTro5.chr12 C 0 C 0 s panPan2.chr12 125681974 37 + 135337776 TATTCAtatgaattatctattgctgtgtaacaaatta i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8195358 37 - 8369578 TATTCAtatgaattatctattgctgtgtaacaaatta i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97843457 37 + 106955855 TATTCAtatgaattatctattgctgtgtaacaaatta i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123968257 37 + 133663169 TATTCAtatgagttatctattgctgtgtaacaaatta i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128215632 37 + 137757926 TATTCAtatgagttatctattgctgtgtaacaaatta i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615529 37 - 16319837 TATTCAtatgagttatctattgctgtgtaacaaatta i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12237975 37 + 20526591 TATTCAtatgagttatctattgctgtgtaacaaatta i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119210905 37 + 128539186 TATTCAtatgagttatctattgctgtgtaacaaatta i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 531066 37 + 6255621 TATTCAtatgagttatctattgctgtgtaacaaatta i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4586572 37 - 8658521 TATTCAtatgagtaatctattgctgtgtaacaagtta i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792397 37 + 124281992 TATTCgtatgagttatctattgctgtgtaacacatta i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 434965 37 - 9212255 TATTCgtatgagttatctattgcggtgtaacagataa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2850092 37 + 4466143 TATTCgtatgagttatctattgctgtgtagcagatta i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558165 37 + 5364348 TATTCgtatgagttatctattgctgggtaacagatta i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6701387 37 - 9870158 GACTAgtattcgttatctactgccgtgtaacaaatta i proCoq1.NW_012154285v1 C 0 I 588 s otoGar3.GL873618 4276339 37 + 7922563 TACTAgtattagttctgtactgctgcataacaaatga i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124798060 37 + 151834684 CATCtgtattagctaccagttgctgcgtaacaagtta i mm10.chr5 C 0 I 1 s canFam3.chr26 33140143 37 - 38964690 TGTGCTTGTCCAttgcctgctgctgcgtagcaaacgg i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 818541 37 - 1116856 TATAtatattagttatctattgctgcataacaaagta i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9452076 637 - 31815103 I a score=42189.000000 s hg38.chr12_KI270834v1_alt 45140 5 + 119498 -ttcca s panTro5.chr12 127331177 5 + 137163284 -ttcca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125682011 5 + 135337776 -ttcca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8195395 5 - 8369578 -tttca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97843494 5 + 106955855 -ttcca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123968294 5 + 133663169 -ctcca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128215669 5 + 137757926 -ctcca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615566 5 - 16319837 -ctcca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12238012 5 + 20526591 -ctcca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119210942 5 + 128539186 -ctcca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 531103 5 + 6255621 -ctcca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4586609 5 - 8658521 -ctcca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792434 5 + 124281992 -ttcca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 435002 5 - 9212255 -ttcca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2850129 5 + 4466143 -ttcca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558202 5 + 5364348 -ttcca i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4276376 4 + 7922563 -cccc- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124798098 4 + 151834684 -cccc- i mm10.chr5 I 1 C 0 s canFam3.chr26 33140180 5 - 38964690 -ctcca i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 818578 5 - 1116856 ccccc- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9452076 637 - 31815103 I e proCoq1.NW_012154285v1 6701424 588 - 9870158 I a score=2535734.000000 s hg38.chr12_KI270834v1_alt 45145 256 + 119498 gtgcatagcagcttcataccacaagcact-gtg-atctcacagtttccgtgggtcgagaatgtgggagtgacttacctgggagcttctagctcagg--ctctc-atgggattgcagtcaagctgttggccagggctgtagatacctggaggcctgggtagagctggaggatcctcatttgagatga-cgtttcacatggctggaggctggaggcctcagt-tcctcaccatgtggctctc-----tccatggatggcttgggtgtgct s panTro5.chr12 127331182 256 + 137163284 gtgcatagcagcttcataccacaagcact-gtg-atctcacagtttccgtggatcgagaatgtgggagtgacttacctgggagcttctagctcagg--ctctc-atgggattgcagtcaagctgttggccagggctgtagatacctggaggcctgggtagagctggaggatcctcatctgagatga-cgtttcacatggctggaggctggaggcctcagt-tcctcaccatgtggctctc-----tccatggatggcttgggtgtgct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125682016 256 + 135337776 gtgcatagcagcttcataccacaagcact-gtg-atctcacagtttccgtggatcgagaatgtgggagtgacttacctgggagcttctagctcagg--ctctc-atgggattgcagtcaagctgttggccagggctgtagatacctggaggcctgggtagagctggaggatcctcatctgagatga-cgtttcacatggctggaggctggaggcctcagt-tcctcaccatgtggctctc-----tccatggatggcttgggtgtgct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8195400 256 - 8369578 gcgcatagcagcttcataccacaagcact-gtg-atctcacagtttccgtgggtcgagaatgtgggagtgacttacctgggagcttccagctcagg--ctctc-atgggattgcagtcaagctgttggccagggctgtagatacctggaggcctgggtagagctggaggatcctcatctgagatga-cgtttcacatggctggaggctggaggcctcagt-tcctcaccatgtggctctc-----tccatggatggcttgggtgtgct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97843499 255 + 106955855 gcgcatagcagcttcataccacaagcact-gtg-atctcacagtttccgtgggtcaagaatgtgggagtgacttccctgagggcttctagctcagg--ctctc-gtgggattgcagtcaagctgttggccagggctgtagctctctggaggcctgggtagagccggaggatcctcatctgagatga-cgtttcacatggctggaggctggaggcctcagt-tcctcaccatgtggctctc-----tccgtggacggctt-ggtgtgct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123968299 257 + 133663169 gcgcatagcagcttcatacaacaaacact-atg-atctcacagtttccgtgggtcaagtatgtgggagtggcttacctgagggtttctagctcagg--ctctc-atgggattgcagtcaagctgttggccagggctgtagacatctggaggcctggctagagctggaggatcctcatctgagatcctcatctgagatggctgaaggctggaggcctccat-tcctcaccctggggccctc-----tccatggatggcttgggtgtgct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128215674 257 + 137757926 gcgcatagcagcttcatacaacaaacact-atg-atctcacagtttccgtgggtcaagtatgtgggagtggcttacctgagggtttctagctcagg--ctctc-atgggattgcagtcaagctgttggccagggctgtagacatctggaggcctggctagagctggaggatcctcatctgagatcctcatctgagatggctgaaggctggaggcctccat-tcctcaccctggggccctc-----tccatggatggcttgggtgtgct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615571 257 - 16319837 gcgcatagcagcttcatacaacaaacact-atg-atctcacagtttccgtgggtcaagtatgtgggagtggcttacctgagggtttctagctcagg--ctctc-atgggattgcagtcaagctgttggccagggctgtagacatctggaggcctggctagagctggaggatcctcatctgagatcctcatctgagatggctgaaggctggaggcctccat-tcctcaccctggggccctc-----tccacggatggcttgggtgtgct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12238017 257 + 20526591 gcgcatagcagcttcatacgacaaacact-gtg-atctcacagtttccgtgggtcaagaatgtgggagtggcttacctgagggcttctagctcagg--ctcgc-atgggattgcagtcaagctgttggccagggctgtagacatctggaggcctggctagagctggaggatcctcatctgagatcctcatctgagatggctgaaggctggaggcctccat-tcctcaccctggggccctc-----tccacggatggcttgggtgtgct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119210947 257 + 128539186 gcgcatagcagcttcatacaacaaacact-gtg-atctcacagtttctgtgggtcaagaatgtgggagtggcttacctgagggtttctagctcagg--ctctc-atgggattgcagtcaagctgttggccagggctgtagacatctggaggcctggctagagctggaggatcttcatctgagatcctcatctgagatggctgaaggctggaggcctccat-tcctcaccctggggccctc-----tccacggatggcttgggtgtgct i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 531108 244 + 6255621 gcacatagcagcttcatacaacaaacact-gtg-atctcacagtttccgtgggtcaagtatgtgggagtggcttacctgagggtttctagctcagg--ctctc-atgggattgcagtcaagctgttggccagggctgtagacatctggaggcctggctagagctggag-------------gatcctcatctgagatggctgaaggctggaggcctccat-tcctcaccatggggccctc-----tccacagatggcttgggtgtgct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4586614 257 - 8658521 gcgcatagcagcttcatacaacaaacact-gtg-atctcacagtttccatgggtcaagaatgtgggagtggcttacctgagggcttctagctcagg--ctctc-atgggattgcagtcaagctgttggccagggctgtagacatctggaggcctggctagagctggaggatcctcatctgagatcctcatctgagatggctgaaggctggaggcctccat-tcctcaccagggggccctc-----tccagagatggcttgggtgtact i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 435007 249 - 9212255 gcgcatagcagcttcatgcatcgagcact-atg-atctcataggtgctgtggatcaggaatatgggagtcacttacctgaggacttccagctcagg--ctctc-atgggattacggtcaagctgttggccagggccgtagatatctggaggcctggccggagctggaggatcctcatgtaagatga-tgtttcacat-------ggctggaggcctcagt-tcctcaccgtgtggccctc-----tccatggatgacttgggtgtgct i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2850134 256 + 4466143 gcgcataacagcttcatacaacgagcact-gtg-atctcatagtttctgtgggtcaggaatgtgggagtcacttacctgaggacttccagctcagg--ctctc-gtgggattgcggtcaagctgctggccagggctgtagatatctggaggcctggccagagctggagaatcctcatctgagatga-tgtttcacatggctggaggctggaggcctcagt-tcctcaccgtgtggccctc-----tccacggatggcttgggtgtgct i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558207 255 + 5364348 gcgcatagcagcttcatacaacgagcact-gtg-atctcatagtttctgtggatcaggaatatgggagtcacttacctgaggacttccagctcagg--ctctc-atgggattgcggtcaagctgttggccagggctgtagatatctggaggcctggccagagctggaggatcctcatctgagctga-tgtttcacatggctggaggctggaggcctcagt-tcctcaccgtgtggccctc-----tccac-gatggcttgggtgtgct i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4276380 224 + 7922563 ------agcagcttggcacaatgcacact--tg-tcattgcagtttctgagggg-gaaaatctaggagtggtatagctgggtggttttggcccagggcctctc-acagaattacagtcaagctgctggccagggct-----------------tgactagggctggggg-tccttgtccaggaaaa-catttcacatggctgga--------gtctcagt-tcctccctgcagggctctc-----tccaagggctgctagagtgtggt i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124798102 239 + 151834684 ----ataccagtaaggt-cgccgaccttt-att-atctctcattttccatgggtcaggaattgttaagtggcttagctggg------taactcaggttctctc-ctgagattgtagttaag-tgtcggtgaaggctgtgttcatttgaaggcctggctggggctggataagcatctgctaagatgg-catttcatgt-------ggctggaggcctcaga-tcgtcactatgcggacctc-----tcctaggaatgcccgattgtgct i mm10.chr5 C 0 I 519 s canFam3.chr26 33140185 236 - 38964690 aggcatagcagctcagcaccacagatgct-gcacacctcccccttcccgcaggcggggaatccgtgagtggctcagccgggtggctctagcttagg--ccctctgcggagcagctggccagcagtcggccggagctgcgggcgtctgaaggcctgatgggggTC-----------------------CCTTGCAGACGCCCACTGGTTTAGGCCCCCCACATTCTATCGAGGTGACTCACAGGGGTTTCTGGGTGACCCATG------ i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 818583 257 - 1116856 aaatttagtggcttaacacaaccaacacttatc-atcccaccattgctgtgagtcgggagccctagagtggctta-ctgagtggacctagctgagg-tctctt-acgaggtcacagtgaagctatt-accagggctgtcattatctgaaggcttgtttggggctggaggaccagctttcaggatggcttattcatgtggctgttggctggaggccttggc-tcctcatgatgtgggcctc-----ttcatgggctgttggagggtcct i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9452076 637 - 31815103 I e proCoq1.NW_012154285v1 6701424 588 - 9870158 I e calJac3.chr9 114792439 0 + 124281992 C a score=27752.000000 s hg38.chr12_KI270834v1_alt 45401 4 + 119498 caac-- s panTro5.chr12 127331438 4 + 137163284 caac-- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125682272 4 + 135337776 caac-- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8195656 4 - 8369578 caac-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97843754 4 + 106955855 cagc-- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123968556 4 + 133663169 caac-- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128215931 4 + 137757926 caac-- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615828 4 - 16319837 caac-- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12238274 4 + 20526591 caac-- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119211204 4 + 128539186 caAC-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 531352 4 + 6255621 caac-- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4586871 4 - 8658521 caac-- i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 435256 4 - 9212255 ccac-- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2850390 4 + 4466143 ccac-- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558462 4 + 5364348 caac-- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4276604 4 + 7922563 cgtg-- i otoGar3.GL873618 C 0 I 2 s canFam3.chr26 33140421 4 - 38964690 Caac-- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 818840 6 - 1116856 caggac i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9452076 637 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6701424 588 - 9870158 I e calJac3.chr9 114792439 0 + 124281992 C a score=609048.000000 s hg38.chr12_KI270834v1_alt 45405 70 + 119498 atggt--------------ag-agtgagtgcttaagat------agatggcaaagcagatgctatgatgtcttttatgacct---ggccttgga s panTro5.chr12 127331442 70 + 137163284 atggt--------------ag-agtgagtgcttaagat------agatggcaaagcagatgctatgatgtcttttatgacct---ggccttgga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125682276 70 + 135337776 atggt--------------ag-agtgagtgcttaagat------agatggcaaagcagatgctatgatgtcttttatgacct---ggccttgga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8195660 70 - 8369578 atggt--------------ag-agtgagtgcttaagat------ggatggcaaagcagatgctatgatgtcttttatgacct---ggccttgga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97843758 70 + 106955855 atggt--------------ag-agtgagtgcttaagat------agatggcaaagcagacactatgatgtcttttatgacct---ggccttgga i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123968560 84 + 133663169 atggtagctggcttcctccag-agtgagtgcttaagat------aggtggcaaagcagatgctatgatgtcttttatgacct---ggccttgga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128215935 84 + 137757926 atggtagctggcttcctccag-agtgagtgcttaagat------aggtggcaaagcagatgctatgatgtcttttatgacct---ggccttgga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615832 84 - 16319837 atggtagctggcttcctccag-agtgagtgcttaagat------aggtggcaaagcagatgctatgatgtcttttatgacct---ggccttgga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12238278 84 + 20526591 acggtagctggcttcctccag-agtgagtgcttaagat------aggtgccaaagcagatgctatgatgtcttttatgacct---ggccttgga i cerAty1.NW_012001186v1 C 0 C 0 s manLeu1.NW_012103587v1 531356 84 + 6255621 atggtagctggcttcctccag-agtgagtgcttaagat------aggtgccaaagcagatgctatgatgtcttttatgacct---ggccttgga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4586875 84 - 8658521 atggtagctggcttcctccag-agtaagtgcttaagac------aggtggcaaagcagatgctatcatgtcttttatgacct---ggccttgga i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 435260 68 - 9212255 atggt-----------------agcgagtgcttaagat------agacagcaaagcagatggtatgatgtcttttatgacct---ggccttgga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2850394 68 + 4466143 atggt-----------------agcgtgtgcttaagat------agacagcaaagcagatggtttgatgtcttttatgacct---ggccttgga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558466 68 + 5364348 atggt-----------------agcgagtgcttaagat------agacagcaaagcagatagtatgatgtcttttatgacct---ggccttgga i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4276610 84 + 7922563 gtagtaggtgacttcctccag-actgagtgtcctggaa------agacagcaaggctgatgccatgatgtcttttgtgccct---agccttgga i otoGar3.GL873618 I 2 C 0 s canFam3.chr26 33140425 75 - 38964690 gtggc--------------agaagtgaaggcagaggatgtctcaagtcatcaagggtggtgt-----tgcatcttattgactctctgcctcgga i canFam3.chr26 C 0 I 32 s dasNov3.JH568189 818846 81 - 1116856 atggcagctggcttctctcag-agagaatgtccaagat------aga--gcaaagcagaagccaccatgtct-ttatgacct---agctgcaga i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9452076 637 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6701424 588 - 9870158 I e calJac3.chr9 114792439 0 + 124281992 C e chlSab2.chr11 119211208 0 + 128539186 C a score=354786.000000 s hg38.chr12_KI270834v1_alt 45475 41 + 119498 agtcacataccctcccttctgccctaatctatgggtgagat s panTro5.chr12 127331512 41 + 137163284 agtcacataccctcccttctgccctaatctatgggtgagat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125682346 41 + 135337776 agtcacataccctcccttctgcactaatctatgggtgagat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8195730 41 - 8369578 agtcacataccctcccttctgccctaatctatgggtgagat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97843828 41 + 106955855 agtcacataccctcccttctgccctaatctatgggtgagat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123968644 41 + 133663169 agtcacataccttcccttctgccctaatctatgggggagac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128216019 41 + 137757926 agtcacataccttcccttctgccctaatctatgggggagac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615916 41 - 16319837 agtcacataccttcccttctgccctaatctatgggggagac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12238362 41 + 20526591 agtcacataccctcccttctgccctaatctatggggcagac i cerAty1.NW_012001186v1 C 0 C 0 s manLeu1.NW_012103587v1 531440 41 + 6255621 agtcacataccctcccttctgccctaatctatgggggagac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4586959 41 - 8658521 agtcacataccctcccttctgccctaatctttgggggagac i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 435328 41 - 9212255 agtcacataccctcccttctgccataatctatgggtgagac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2850462 41 + 4466143 agtcacataccgtcccttctgccataatctatgggtgagac i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558534 41 + 5364348 agtcacataccctcccctctgccataatctatgcgtgagac i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4276694 41 + 7922563 agtcactggctatcccttctgctgtattctgtggctcaggg i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 818927 40 - 1116856 agtcacat-ccagcacttctgccatattccactggtcagag i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9452076 637 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6701424 588 - 9870158 I e canFam3.chr26 33140500 32 - 38964690 I e calJac3.chr9 114792439 0 + 124281992 C e chlSab2.chr11 119211208 0 + 128539186 C a score=1139253.000000 s hg38.chr12_KI270834v1_alt 45516 133 + 119498 agaagccaccctgtacaccctgata-----tagtgtgggagggacctgcaccagggcatggacacctggaggtgagtatgatctggggcccttttggaggctggctgtcacaTTATTCACCATCATTTTTGGGTTTCT s panTro5.chr12 127331553 133 + 137163284 agaagccaccctgtacaccctgata-----tagtgtgggagggacctgcaccagggcgtggacacctggaggcgaggatgatctggggccctcttggaggctggctgtcacaTTATTAACCATCATTTTTGGGTTTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125682387 133 + 135337776 agaagccaccctgtacaccctgata-----tagtgtgggagggacctgcaccagggcatggacacctggaggcgaggatgatctggggccctcttggaggctggctgtcacaTTATTAACCATCATTTTTGGGTTTCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8195771 133 - 8369578 agaagccaccctgtacaccctgata-----tagtgtgggaggggcctgcaccaggtcatggacacctggaggcgaggatgatctggggccctcttggaggctggctgtcacaTTATTCACCATCATTTTTGGGTTTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97843869 133 + 106955855 agaagccaccctgtgcaccctgata-----tagtgtgggaggggcctgcaccagggcatggacacctggaggcgaggatgatctggggccctcttggaggctggctgtcacaTTATTCACCATCATTTTTGGGTTTCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123968685 133 + 133663169 agaatccaccctgtacaccctgata-----cagtgtgggaggggcctgcaccagggcgtggacacctggaggcgaggagaatctggggccctcttagaggctggctgtcacaTTATTCACCATCATTTTTGGGTTTCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128216060 133 + 137757926 agaatccaccctgtacaccctgata-----cagtgtgggaggggcctgcaccagggcgtggacacctggaggcgaggagagtctggggccctcttagaggctggctgtcacaTTATTCACCATCATTTTTGGGTTTCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10615957 133 - 16319837 agaatccaccctgtataccctgata-----cagtgtgggaggggcctgcaccagggcgtggacacctggaggcgaggagaatctggggccctcttagaggctggctgtcacaTTATTCACCATCATTTTTGGGTTTCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12238403 133 + 20526591 agaatccaccctgtacaccctgata-----cagtgtgggaggggcctgcaccagggcgtggacacctggaggcgaggaggatctggggccctcttagaggctggctgtcacaTTATTTACCATCATTTTTGGGCTTCT i cerAty1.NW_012001186v1 C 0 C 0 s manLeu1.NW_012103587v1 531481 133 + 6255621 agaatccaccctgtacaccctgata-----cagtgtgggaggggcctgcaccagggcgtggacacctggaggcgaggaggatctggggccctcttagaggctggctgtcacaTTATTCACCATCATTTTTGGGTTTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4587000 133 - 8658521 agaatccaccctatacaccctgata-----cagtgtgggaggggcctgcaccagggcgtgcacacctggaggcgaggaggatctgggaccatcttagaggctggctgtcacaTTATTCACCATCATCTGTGGGTTTCT i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 435369 131 - 9212255 agaagccacc--gaactccctgata-----cagtgtggaaggggcctgcaccagggtgtgggcacctggaggcgaggatgatctggggccctcttggaggctggctgtaacaTTATTCACCATCATTTTTGGGTTTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2850503 130 + 4466143 agaagccacc--gaattccctgata-----cagtatggaaggggcctgcaccagggtgtgggcacctggaggcgaggctgatct-gggccctcttggaggctggctgtcacaTTATTCACCATGATTTTTGGGTTTCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558575 131 + 5364348 agaaaccact--gaactccctgata-----cagtgtggaaggggcctgcaccagggcgtgggcacctggaggcgagggtgatctggggccctcttggaggctgtctgtcacaTTATTCACCATCATTTTTGGGTTTCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4276735 125 + 7922563 aga----accagaaccaccctggtg-----tcgtgtgggggagg--tgcatgagggtataagtacctgggg--gagggtggttggggacccctgtggaggctagctatcaTGTTTTTCTTCATCATTTGGGGGTTTCT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33140532 115 - 38964690 agaggtcacccagca-gccctgggaggggtcAGTGCAGGGGGAGCC-------AAGAACTGCCACCTTGGGG-GAGG--------------TGTTAGAGGCTGGCTATCATGTTACTCATCTCTGGTTTGTGACTTTG i canFam3.chr26 I 32 C 0 s dasNov3.JH568189 818967 119 - 1116856 ----------agatccaccccgatg-----cggtgtgggaggccactccgcagggctgtgaatccctggaggcagaggttgctgggcacccttttggagactg----TTCCATTATTAACCATTGTTTTGTGATTTCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9452076 637 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6701424 588 - 9870158 I e calJac3.chr9 114792439 0 + 124281992 C e chlSab2.chr11 119211208 0 + 128539186 C a score=729415.000000 s hg38.chr12_KI270834v1_alt 45649 85 + 119498 -AAAACTTTGCAAG-TGTTTCCTTTCCTTCCTCCAGCCAGCTATGTGTCCAAT------GTGTCGGGGGTCGGATA--TGTACCTGGCATAGAAT s panTro5.chr12 127331686 85 + 137163284 -AAAACTTTGCAAG-TGTTTCCTTTCCTTCCTCCAGCCAGCTATGTGTCCAAT------GTGTCAGGGGTCGGATA--TGTACCTGGCATAGAGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125682520 85 + 135337776 -AAAACTTTGCAAG-TGTTTCCTTTCCTTCCTCCAGCCAGCTATGTGTCCAAT------GTGTCAGGGGTCGGATA--TGTACCTGGCATAGAGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8195904 85 - 8369578 -AAAACTTTGCAAG-TGTTTCCTTTCCTTCCTCCAGCCAGCTATGTGTCCAGT------GTGTCGGGGGTCGGATA--TGTACCCGGCGTAGAGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844002 78 + 106955855 -GAAACTTTGCAAG-TGTTTCCTTTCCTTCCTCCAGCCAGCTATGTGTCCAAT------GTGTCGGGGGTCGGATA--TGTACC-------GAGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123968818 85 + 133663169 -AAAACTTTTCAAG-TGTTTCCTTTCCTTCCTCCAGTCAGTTACATGTCCAAT------TTGTAGGAGGTCGGATA--TGTACCCAGCATGGAGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128216193 85 + 137757926 -AAAACTTTTCTAG-TGTTTCCTTTCCTTCCTCCAGTCAGTTACATGTCCAAT------TTGTAGGAGGTCGGATA--TGTACCCAGCATGGAGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10616090 85 - 16319837 -AAAACTTTTCAAG-TGTTTCCTTTCCTTCCTCCAGTCAGTTACATGTCCAAT------TTGTAGGAGGTCGGATA--TGTACCCAGCATGGAGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12238536 85 + 20526591 -AAAACTCTTCAAG-TGTTTCCTTTCCTTCCTCCAGCCAGTTACATGTCCAAT------TTGTAGGAGGTCGGATA--TGTACCCAGCATGGAGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119211208 85 + 128539186 -AAAACTTTTCAAG-TGTTTCCTTTCCTTCCTCCAGCCAGTTACATGTCCAAT------TTGTAGGGGGTTGGATA--TGTACCCAGCATGGAGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 531614 85 + 6255621 -AAAACTTTTCAAG-TGTTTCCTTTCCTTCCTCCAGTCAGTTACATGTCCAAT------TTGTAGGAGGTCGGATA--TGTACCCAGCATGGAGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4587133 85 - 8658521 -AAAACTTTTCAAG-TGTTTCCTTTCCTTCCTTCAGCCAGTTACGTGTCCAAT------TTATAGGGGGTCAGATA--TGTACCCAGCATGGAGT i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 435500 84 - 9212255 -AAAACTTTTCAAG-TGTTTCCTTTCCTTCCTCTGGCCAGCTACGTGTCCGGT------GTGT-GGGGGTCGGATA--TGTTCCACGCACGGAGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2850633 84 + 4466143 -AAAACTTTTTAAG-TGTTTCCTTTCCTTCCTCCAGCCAGCTACATGTCCAAT------GTGT-GGGGGTTGGATA--TGTACCAGGCACGGAGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558706 81 + 5364348 -AAAACTT---AAG-TGTTTCCTTTCCTTCCTCCAGCCAGCTACGTGTCCAGT------GTGT-GGGGGTCGGGTA--TGTACCAGGCACGGAGC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4276860 88 + 7922563 -AAAATGTTTTAGGTTTTTTCCTCTGCTTCCTGCAGC----TCTTTGTCCACTGTGGTGGTGCTGGGTGAGGGGCA--TCTGTTAGACATGGGGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33140647 77 - 38964690 -AAAAC--TGGAAG-GTTTTTCCTTCCTTCCTCCATC----TCTGCGTTACAT------GTGG-GAGCGTCTGACA--TGGGTCAGACGCTGGC- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819086 83 - 1116856 AAAATCTTTTTACT-TTTCTCCTTTCCTTCCTCCAGCCATTTT----TCCAAT------GTGG-GAGGGCCTGATACGTGTGTCAGGCCCTGAAC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9452076 637 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6701424 588 - 9870158 I e calJac3.chr9 114792439 0 + 124281992 C a score=15621.000000 s hg38.chr12_KI270834v1_alt 45734 2 + 119498 TC s panTro5.chr12 127331771 2 + 137163284 TC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125682605 2 + 135337776 TC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8195989 2 - 8369578 TT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844080 2 + 106955855 TC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123968903 2 + 133663169 TT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128216278 2 + 137757926 TT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10616175 2 - 16319837 TT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12238621 2 + 20526591 TT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119211293 2 + 128539186 TT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 531699 2 + 6255621 TT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4587218 2 - 8658521 TT i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 435584 2 - 9212255 TT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2850717 2 + 4466143 TC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558787 2 + 5364348 TC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9452713 2 - 31815103 TC i micMur3.chr21 I 637 C 0 s otoGar3.GL873618 4276948 2 + 7922563 TT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33140724 2 - 38964690 TA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819169 2 - 1116856 TA i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6701424 588 - 9870158 I e calJac3.chr9 114792439 0 + 124281992 C a score=24840.000000 s hg38.chr12_KI270834v1_alt 45736 3 + 119498 GCA s panTro5.chr12 127331773 3 + 137163284 GCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125682607 3 + 135337776 GCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8195991 3 - 8369578 GCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844082 3 + 106955855 GCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123968905 3 + 133663169 GCG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128216280 3 + 137757926 GCG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10616177 3 - 16319837 GCG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12238623 3 + 20526591 GCG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119211295 3 + 128539186 GCG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 531701 3 + 6255621 GCG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4587220 3 - 8658521 GCG i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 435586 3 - 9212255 GTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2850719 3 + 4466143 GTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558789 3 + 5364348 GTG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9452715 3 - 31815103 GCT i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4276950 3 + 7922563 GCA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33140726 3 - 38964690 GCC i canFam3.chr26 C 0 C 0 e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6701424 588 - 9870158 I e dasNov3.JH568189 819171 0 - 1116856 C e calJac3.chr9 114792439 0 + 124281992 C a score=378829.000000 s hg38.chr12_KI270834v1_alt 45739 31 + 119498 GGGTGCACAGGA--CAAGTGATAGTGAACAAGC s panTro5.chr12 127331776 31 + 137163284 GGGTGCACAGGA--CAAGTGATAGTGAACAAGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125682610 31 + 135337776 GGGTGCACAGGA--CAAGTGATAGTGAACAAGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8195994 31 - 8369578 GGGTGCACAGGA--CAAGTGATAGTGAACAAGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844085 31 + 106955855 GGGTGCACGGGA--CAAGTGATAGTGAACAAGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123968908 30 + 133663169 GGGTGCACAGGA--CAAGTGA-AGTGAACAAGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128216283 30 + 137757926 GGGTGCACAGGA--CAAGTGA-AGTGAACAAGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10616180 30 - 16319837 GGGTGCACAGGA--CAAGTGA-AGTGAACAAGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12238626 30 + 20526591 GGGTGCACAGGA--CAAGTGA-AGTGAACAAGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119211298 30 + 128539186 GGGTGCACAGGA--CAAGTGA-AGTGAACAAGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 531704 30 + 6255621 AGGTGCACAGGA--CAAGTGA-AGTGAACAAGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4587223 30 - 8658521 GGGTGCACAGGA--CAAGTGA-AGTGAACAAGC i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 435589 31 - 9212255 GGGTGCACAGGA--CAAGTGACAGTGAACAAGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2850722 31 + 4466143 GGGTGCACAGGA--CAAGTGACAGTGAGCAGGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558792 31 + 5364348 GGGTGCACAGGA--CAAGTGACAGTGAACAAGG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9452718 31 - 31815103 GGGTGCACAGGA--CAAGTGACAGTGAGCAAGC i micMur3.chr21 C 0 I 1528 s proCoq1.NW_012154285v1 6702012 31 - 9870158 GGGTGCACAGGA--CAAGTGACAGTGAGCAAGC i proCoq1.NW_012154285v1 I 588 I 1 s otoGar3.GL873618 4276953 31 + 7922563 GTGTGTGCAGGA--CAAGCAACAGCGAGCAAGT i otoGar3.GL873618 C 0 I 1 s canFam3.chr26 33140729 33 - 38964690 AGGTGCCATGGAGGCAGACAGCAGTGACCCTGC i canFam3.chr26 C 0 C 0 e mm10.chr5 124798341 519 + 151834684 I e dasNov3.JH568189 819171 0 - 1116856 C e calJac3.chr9 114792439 0 + 124281992 C a score=376603.000000 s hg38.chr12_KI270834v1_alt 45770 38 + 119498 TGTCAAGATCTGTTCTGTAGGGATTTGCAGGCAGTGGG s panTro5.chr12 127331807 38 + 137163284 TGTCAAGATCTGTTCTGTAGGGATTTGCAGGCAGTGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125682641 38 + 135337776 TGTCAAGATCTGTTCTGTAGGGATTTGCAGGCAGTGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8196025 38 - 8369578 TGTCAAGATCTGTTCTGTAGGGATTTGCAGGCAGTGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844116 38 + 106955855 TGTCAAGATCTGTTCTGTAGGGATTTGCAGGCAGTGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123968938 38 + 133663169 TGTGAAGATCTGTTCTGTAGGGATTCGCAGGCAGTGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128216313 38 + 137757926 TGTGAAGATCTGTTCTGTAGGGATTCGCAGGCAGTGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10616210 38 - 16319837 TGTGAAGATCTGTTCTGTAGGGATTCGCAGGCAGTGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12238656 38 + 20526591 TGTGAAGATCTGTTCTGTAGGGATTCGCAGGCAGTGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119211328 38 + 128539186 TGTGAAGATCTGTTCTGTAGGGATTCGCAGGCAGTGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 531734 38 + 6255621 TGTGAAGATCTGTTCTGTAGGGATTCGCAGGCAGTGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4587253 38 - 8658521 TGTGAAGATCTGTTCTGTAGGGATTCGCAGGCAATGGT i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 435620 38 - 9212255 TGTCAAGGTCTGCTCTGGAGGGGTCCTCAGGCAGTTGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2850753 38 + 4466143 TGTCAAGGTCTGCTCTGGAGGGGTCCTCAGGCAGTTGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558823 37 + 5364348 TGTCAAGGTCTGCTCTGGAGGGGCCCTCAGGCAGTCG- i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6702044 38 - 9870158 TGTCCAGGTCTGCTCTGGAAGGATTCGCAGGCAGTGGG i proCoq1.NW_012154285v1 I 1 I 1263 s otoGar3.GL873618 4276985 35 + 7922563 TACCTTGGTCTGCCCTGAATGGCTTTGCAGGCAGT--- i otoGar3.GL873618 I 1 C 0 s canFam3.chr26 33140762 32 - 38964690 ------AGTCAGGTCTGGAGGGACTCGCAGTCAGTGGG i canFam3.chr26 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e dasNov3.JH568189 819171 0 - 1116856 C e calJac3.chr9 114792439 0 + 124281992 C a score=385348.000000 s hg38.chr12_KI270834v1_alt 45808 37 + 119498 GGGATAAACATGGAGATGTGCACAGGGAGCATGGCAG s panTro5.chr12 127331845 37 + 137163284 GGGATAAACATGGAGATGTGCACAGGGAGCATGGCAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125682679 37 + 135337776 GGGATAAACATGGAGATGTGCACAGGGAGCATGGCAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8196063 37 - 8369578 GGGATAAACATGGAGATGTGCACAGGGAGCACGGCAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844154 37 + 106955855 GAGATAAACATGGAGATGTGCACAGGGAGCATGGCAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123968976 37 + 133663169 AGGATAAACATGGAGATGTGCACAGGGAGCATGGCGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128216351 37 + 137757926 AGGATAAACATGGAGATGTGCACAGGGAGCATGGCGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10616248 37 - 16319837 AGGATAAACATGGAGATGTGCACAGGGAGCATGGCGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12238694 37 + 20526591 AGGATAAACATGGAGATGTGCACAGGGAGCATGGCGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119211366 37 + 128539186 AGGATAAACATGGAGATGTGCACAGGGAGCGTGGCGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 531772 37 + 6255621 AGGATAAACATGGAGATGTGCACAGGGAGCATGGCGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4587291 37 - 8658521 GGGATAAACATGGAGATGTGCACAGGGAGCATGGCGG i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 435658 37 - 9212255 GGGATAAACATGGAGATGAGCACAGGGAGCATGGCAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2850791 37 + 4466143 GGGATAAACATGGAGATGAGCACAGGGAGCATGGCAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558860 37 + 5364348 GGGATAAACATGGGGATGAGCACAGGGAGCAAGGCAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4277020 37 + 7922563 GGGACAAACGCAATGATGACTACAGGGAATGTGGCAG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33140794 34 - 38964690 ---GCAAACTTGAAAATGAACCCATGAAACATGACAG i canFam3.chr26 C 0 I 544 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6702082 1263 - 9870158 I e dasNov3.JH568189 819171 0 - 1116856 C e calJac3.chr9 114792439 0 + 124281992 C a score=11815.000000 s hg38.chr12_KI270834v1_alt 45845 2 + 119498 TG s panTro5.chr12 127331882 2 + 137163284 TG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125682716 2 + 135337776 TG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8196100 2 - 8369578 TG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844191 2 + 106955855 TG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123969013 2 + 133663169 GG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128216388 2 + 137757926 GG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10616285 2 - 16319837 GG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12238731 2 + 20526591 GG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119211403 2 + 128539186 GG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 531809 2 + 6255621 GG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4587328 2 - 8658521 GG i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 435695 2 - 9212255 TG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2850828 2 + 4466143 TG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558897 2 + 5364348 TG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4277057 2 + 7922563 TG i otoGar3.GL873618 C 0 I 496 s canFam3.chr26 33141372 2 - 38964690 TG i canFam3.chr26 I 544 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6702082 1263 - 9870158 I e dasNov3.JH568189 819171 0 - 1116856 C e calJac3.chr9 114792439 0 + 124281992 C a score=2679451.000000 s hg38.chr12_KI270834v1_alt 45847 287 + 119498 TTTACAG-------------CCAGAGGGACCTGCAGGTTTGTGGAGTCAGGCACTAGGAAGCCGCATTTGGGAGCCTCCTTCACAACACCCCTACCCC-------AGGACTCTG--------------CAGCTGGTGCTCATCAGCCCAGCCAGGTACACCTGAACACAGTGGCTTTAGCAAGGTACACATTCAGCTTCAACACGTTCAGCTCATGTGCACCTGCACTTTGGGTGCCCTACGTGGAGAGAGTTATGGAAGGCAGAG-----------GTTCgttct--caaagtgtggtccccagaccggcagccttggcatcactggaaactt s panTro5.chr12 127331884 287 + 137163284 TTTACAG-------------CCAGAGGGACCTGCAGGTTTGTGGAGTCAGGCACTAGGAAGCCGCATTTGGGAGCCTCCTTCACAACACCCCTACCCC-------AGGACTCTG--------------CAGCTGGTGCTCATCAGCCCAGCCAGGTACACCTGAACACAGTGGCTTTAGCAAGGTACACATTCAGCTTCAACACGTTCAGCTCGTGTGCACCTGCACTTTGGGTGCCCTACATGGAGAGAGTTATGGAAGGCAGAG-----------GTTCgttct--gaaagtgtggtccccagaccggcagccttggcatcactggaaactt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125682718 287 + 135337776 TTTACAG-------------CCAGAGGGACCTGCAGGTTTGTGGAGTCAGGCACTAGGAAGCCGCATTTGGGAGCCTCCTTCACAACACCCCTACCCC-------AGGACTCTG--------------CAGCTGGTGCTCATCAGCCCAGCCAGGTACACCTGAACACAGTGGCTTTAGCAAGGTACACATTCAGCTTCAACACGTTCAGCTCGTGTGCACCTGCACTTTGGGTGCCCTACATGGAGAGAGTTATGGAAGGCAGAG-----------GTTCgttct--gaaagtgtggtccccagaccggcagccttggcatcactggaaactt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8196102 287 - 8369578 TTTACAG-------------CCAGAGGGACCTGCAGGTTTGTGGAGTCAGGCACTAGGAAGCCGCATTTGGGAGCCTCCTTCACAACACCCCTCTCCC-------AGGACTCTG--------------CAGCTGGTGCTCATCAGCCCAGCCAGGTACACCTGAACACAGTGGCTTTAGCAAGGTACACATTCAGCTTCAACACGTTCAGCTCGTGTGCACCTGCACTTTGCGTGCCCTACATGGAGAGAGTTATGGAAGGCAGAG-----------GTTCgttct--caaagtgtggtccccagaccggcagccttggcatcactggaaactt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844193 287 + 106955855 TTTACAG-------------CCAGAGGGAGCTGCAGGTTTGTGGAGTCAGGCACTAGGAAGCCGCATTTGGGAGCCTCCTTCACAACACCCCTCCCCC-------AGGACTCTG--------------CAGCTGGTGCTCATCAGCCCAGCCAGGTACACCTGAACACAGTGGCTTTAGCAAGGCACACATTCAGCTTCAACACGTTCTGCTCGTGTGCACCTGCACTTTGGGCGTCCTACATGGAGAGAGTTATGGAAGGCAGAG-----------GTTCgttct--caaagtgtggtccccagaccggcagccttggcatcactggaaactc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123969015 287 + 133663169 TTTACAG-------------CCAGGGGGACCTACGGGTTTGTGGAGTCAGGCACTAGGATGACGCATTTGGGAGCCTCCGTCACAACACCCCTCCCCC-------AGGACTCTG--------------CAACTGGTGCTCATCAGCCCGGCCAGGTGCACCTGAACGCAGTCGCTTTAGCAGGGCACACATTCAGCTTCAACACGTTCAGCTCGTGTGCACCTGCACTTTGGGTGCCCTACATGGAGAGGGTTATGGAAGGCAGAG-----------GTTCgttct--caaagtatggtccccagactggctgcctcagcatcactggaaactt i rheMac8.chr11 C 0 I 317 s macFas5.chr11 128216390 287 + 137757926 TTTACAG-------------CCAGGGGGACCTACGGGTTTGTGGAGTCAGGCACTAGGATGACGCATTTGGGAGCCTCCGTCACAACACCCCTCCCCC-------AGGACTCTG--------------CAACTGGTGCTCATCAGCCCGGCCAGGTGCACCTGAACGCAGTCGCTTTAGCAGGGCACACATTCAGCTTCAACACGTTCAGCTCGTGTGCACCTGCACTTTGGGTGCCCTACATGGAGAGGGTTATGGAAGGCAGAG-----------GTTCgttct--caaagtatggtccccagactggctgcctcagcatcactggaaactt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10616287 287 - 16319837 TTTACAG-------------CCAGGGGGACCTACGGGTTTGTGGAGTCAGGCACTAGGATGACACATTTGGGAGCCTCCATCACAACACCCCTCCCCC-------AGGACTCTG--------------CAACTGGTGCTCATCAGCCCGGCCAGGTGCACCTGAACGCAGTCGCTTTAGCAGGGCACACATTCAGCTTCAACACGTTCAGCTCGTGTGCACCTGCACTTTGGGTGCCCTACATGGAGAGGGTTATGGAAGGCAGAG-----------GTTCgttct--caaagtatggtccccagactggctgcctcagcatcactggaaactt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12238733 301 + 20526591 TTTACAG-------------CCAGGGGGACCTACGGGTTTGTGGAGTCAGGCACTAGGATGACGCATTTGGGAGCCTCCGTCACAACCCCCCTCCCCC-------AGGACTCTGCAACTGATGCTCATCAACTGGTGCTCATCAGCCTGGCCAGGTGCACCTGAACGCAGTCGCTTTAGCAAGGCACACATTCAGTTTCAACACGTTCAGCTCGTGTGCACCTGTACTTTGGGTGCCCTACATGGAGAGGGTTATGGAAGGCAGAG-----------GTTCgttct--caaagtatggtccccagactggctgcctcagcatcactggaaactt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119211405 286 + 128539186 TTTACAG-------------CCA-GGGGACCTACGGGTTTGTGGAGTCAGGCACTAGGATGCCGCATTTGGGAGCCTCCGTCACAACACCCCTCCCCC-------AGGACTCTG--------------CAGCTGGTGCTCATCAGCCTGGCCAGGTGCACCTGAACGCAGTCGCTTTAGCAGGGCACACATTCAGCTTCAACACGTTCAGCTCGTGTGCACCTGCACTTTGGGTGCCCTGCATGGAGAGGGTTATGGAAGGCAGAG-----------GTTCAttct--caaagtatggtccccagactggccgcctcagcatcactggaaactt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 531811 287 + 6255621 TTTACAG-------------CCAGGGGGACCTACGGGTTTGTGGAGTCAGGCACTAGGATGCCGCATTTGGGAGCCTCCATCACAACACCCCTCCCCC-------AGGACTCTG--------------CAGCTGGTGCTCATCAGCCTGGCCAGGTGCACCTGAACGCAGTCGCTTTAGCAAGGCACACATTCAGCTTCAACACGTTCAGCTCGTGTGCACCTGCACTTTGGGTGCCCTACATGGAGAGGGTTATGGAAGGCAGAG-----------GTTCgttct--caaagtatggtccccagactggccgcctcagcatcactggaaactt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4587330 300 - 8658521 TTTACAGCCCTACTGTAAACCCGTAGGGACCTACGGGTTTGTGGAGTCAGGCACTAGGATGCCGTATTTGGGAGCCTCCATCACAACACCCCTCCCCC-------AGGACTCTG--------------CAGCTGGTGCTCATTAGCCCAGCCAGGTGCACCTGAACACAGTCGCTTTAGCAAGGCACACATTCGGCTTCAACACGTTCAGCTTGTGTGCACCTGCACTTTGGGTGCCTTACATGGAGAGGGTTATGGAAAGCAGAG-----------GTTCgttct--caaagtatggtccccagactagccacctcagcatcactggaaactt i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 435697 290 - 9212255 TTTGCAG-------------CCAGAGGGACCTACAGGTTTGTGGAGTCAGGCACTAGGAAGCCTCATTTGAGAGCCTCCTTTGCAACACCCCTCTCCTGGTGCTCAGGACTCTG--------------CACCTGGTGCTC---AGCCCAGCCAGGCACACCTGAATGCAGTCGC-TTAGCAAGGCACACATTCAGCTTCAACACATTCAGCTCGTGTGCACCTGCACTTTGGATGCCCTAGGTGGAGAGAGTTATGGAAGGCAGCA-----------GTTTgttct--caaagtgtggtccccagacTCAcagccttggcatcactggaaactt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2850830 269 + 4466143 TTTGCAG-------------CCAAAGGGACCTACAGGTTTGTGGAGTCAGGCACTAGGAAGCCTCATCGGAGAGCCTCCTTTGCAACACCCCTCC-----------------------------------CCTGGTGCTC---AGCCCAGCCAGATGCGCCTCAACACAGTTGC-TTAGCAAGGCACACATTCAGCTTCAGCACATTCAGCTCGTGTGCACCTGCACTTTGGATGCCCTACTTGGAGAGAGTCATGGAAGGCAGCA-----------GTTCgtttt--caaagtgtggtccccagactcatagccttggcatcactggaaactt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1558899 289 + 5364348 TTTGCAG-------------CCAGAGGGACCTACAGGTTTGTGGAGTCAGGCACTAGGAAGCCTCATTTGAGAGCCTCCTTCTCAACACCCCTCCCCTGGTGCT-AGGACTCTG--------------CACCTGGTACTC---AGCCCAGCCAGGTGCACCTGAACACAGTCGC-TTAGCAAGGCACACATTCAGCTTCAACACATTCAGCTCGTGTGCACCTGCACTTTGGATGCCCTACTTGGAGGGAGTTATGGAAGGCAGCA-----------GTTCgttctcacaaagtgtggtccctagactcacagccttggcatcactgg--actt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4277555 247 + 7922563 TTTACAG-------------TT-GGGGGAGCTGCAGGTTTGTGGAGTTGGGCCCAGGGAAGCCGTACTGGAGAGGCTCC-TCCCAGC-TCCCTGCCCT-------GGGGCTCTG--------------CAGCTGGTGCCCAT----------------------------TGGCTTTA----GATGCATATTCAGCTACATCACATCCAGCTTATGT-CACCTGCACTTCAGGTGCCCTGATTGGAGGGCGTTATGGAAGAcagtg-----------g----ttct--tagagtgtggtccccagatcagcagggttgacagcactgaaaactc i otoGar3.GL873618 I 496 C 0 s canFam3.chr26 33141374 275 - 38964690 TTTACCA-------------CCAGACGGACCTGCAAGTTTGTGGGGTCAGGCAAACAACAGTGATGTTCAGAAACCCCCACTGTA-TGCCCTTCCACT-------GGGACTCAG--------------CAGCTGGTGCTTATCCCCCCAA-CAGGCACATTTGAGCATATTCGCTATAATGAGATGCACATTCACCTTCGACATGTTGGGCTCCTGTGCAGCTGCACCAGTGAGCCCCT---------------TAGAAGGCAGTGTTAGCCACGGTGCtggttct--taagg-gtggtccctaagccagcagtattg-----cctgaaaattt i canFam3.chr26 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6702082 1263 - 9870158 I e dasNov3.JH568189 819171 0 - 1116856 C e calJac3.chr9 114792439 0 + 124281992 C a score=30045.000000 s hg38.chr12_KI270834v1_alt 46134 3 + 119498 gtt s panTro5.chr12 127332171 3 + 137163284 gtt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683005 3 + 135337776 gtt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8196389 3 - 8369578 gtt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844480 3 + 106955855 gtt i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128216677 3 + 137757926 gtt i macFas5.chr11 C 0 I 314 s macNem1.NW_012010578v1 10616574 3 - 16319837 gtt i macNem1.NW_012010578v1 C 0 I 317 s cerAty1.NW_012001186v1 12239034 3 + 20526591 gtt i cerAty1.NW_012001186v1 C 0 I 315 s chlSab2.chr11 119211691 3 + 128539186 gtt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 532098 3 + 6255621 gtt i manLeu1.NW_012103587v1 C 0 I 304 s colAng1.NW_012116043v1 4587630 3 - 8658521 gtt i colAng1.NW_012116043v1 C 0 I 299 s saiBol1.JH378194 435987 3 - 9212255 gtt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2851099 3 + 4466143 gtt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1559188 3 + 5364348 gtt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4277802 3 + 7922563 att i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33141649 3 - 38964690 gct i canFam3.chr26 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6702082 1263 - 9870158 I e dasNov3.JH568189 819171 0 - 1116856 C e calJac3.chr9 114792439 0 + 124281992 C e rheMac8.chr11 123969302 317 + 133663169 I a score=40064.000000 s hg38.chr12_KI270834v1_alt 46137 5 + 119498 aaaaa s panTro5.chr12 127332174 5 + 137163284 aaaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683008 5 + 135337776 aaaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8196392 4 - 8369578 -aaaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844483 4 + 106955855 -aaaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123969619 4 + 133663169 -aaaa i rheMac8.chr11 I 317 I 1 s macFas5.chr11 128216994 4 + 137757926 -aaaa i macFas5.chr11 I 314 I 1 s macNem1.NW_012010578v1 10616894 4 - 16319837 -aaaa i macNem1.NW_012010578v1 I 317 I 1 s cerAty1.NW_012001186v1 12239352 4 + 20526591 -aaaa i cerAty1.NW_012001186v1 I 315 I 1 s chlSab2.chr11 119211694 5 + 128539186 taaaa i chlSab2.chr11 C 0 I 310 s manLeu1.NW_012103587v1 532405 4 + 6255621 -aaaa i manLeu1.NW_012103587v1 I 304 I 1 s colAng1.NW_012116043v1 4587932 4 - 8658521 -aaaa i colAng1.NW_012116043v1 I 299 I 1 s saiBol1.JH378194 435990 5 - 9212255 taaaa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2851102 5 + 4466143 Taaaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1559191 5 + 5364348 taaaa i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4277805 5 + 7922563 taaaa i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33141652 5 - 38964690 tatac i canFam3.chr26 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6702082 1263 - 9870158 I e dasNov3.JH568189 819171 0 - 1116856 C e calJac3.chr9 114792439 0 + 124281992 C a score=27564.000000 s hg38.chr12_KI270834v1_alt 46142 8 + 119498 AATACCCT s panTro5.chr12 127332179 8 + 137163284 AATACCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683013 8 + 135337776 AATACCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8196396 8 - 8369578 aataccct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844487 8 + 106955855 aatacccc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123969624 8 + 133663169 aagatccc i rheMac8.chr11 I 1 C 0 s macFas5.chr11 128216999 8 + 137757926 aagatccc i macFas5.chr11 I 1 C 0 s macNem1.NW_012010578v1 10616899 8 - 16319837 aagatccc i macNem1.NW_012010578v1 I 1 C 0 s cerAty1.NW_012001186v1 12239357 8 + 20526591 aagatccc i cerAty1.NW_012001186v1 I 1 C 0 s manLeu1.NW_012103587v1 532410 8 + 6255621 aagatccc i manLeu1.NW_012103587v1 I 1 C 0 s colAng1.NW_012116043v1 4587937 8 - 8658521 aaGATCCC i colAng1.NW_012116043v1 I 1 C 0 s saiBol1.JH378194 435995 5 - 9212255 --taccc- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2851107 5 + 4466143 --taccc- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1559196 5 + 5364348 --taccc- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4277810 6 + 7922563 --gacccc i otoGar3.GL873618 C 0 I 2 s canFam3.chr26 33141657 6 - 38964690 --tactct i canFam3.chr26 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6702082 1263 - 9870158 I e dasNov3.JH568189 819171 0 - 1116856 C e calJac3.chr9 114792439 0 + 124281992 C e chlSab2.chr11 119211699 310 + 128539186 I a score=51952.000000 s hg38.chr12_KI270834v1_alt 46150 4 + 119498 AGAC s panTro5.chr12 127332187 4 + 137163284 AGAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683021 4 + 135337776 AGAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8196404 4 - 8369578 agac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844495 4 + 106955855 agac i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123969632 4 + 133663169 agac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128217007 4 + 137757926 agac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10616907 4 - 16319837 agac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12239365 4 + 20526591 agac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119212009 4 + 128539186 agac i chlSab2.chr11 I 310 C 0 s manLeu1.NW_012103587v1 532418 4 + 6255621 agac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4587945 4 - 8658521 AGAC i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 436000 4 - 9212255 agac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2851112 4 + 4466143 agac i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1559201 4 + 5364348 agac i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4277818 4 + 7922563 agac i otoGar3.GL873618 I 2 C 0 s canFam3.chr26 33141663 4 - 38964690 agac i canFam3.chr26 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6702082 1263 - 9870158 I e dasNov3.JH568189 819171 0 - 1116856 C e calJac3.chr9 114792439 0 + 124281992 C a score=8323.000000 s hg38.chr12_KI270834v1_alt 46154 1 + 119498 C s panTro5.chr12 127332191 1 + 137163284 C i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683025 1 + 135337776 C i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8196408 1 - 8369578 c i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844499 1 + 106955855 t i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123969636 1 + 133663169 c i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128217011 1 + 137757926 c i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10616911 1 - 16319837 c i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12239369 1 + 20526591 c i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119212013 1 + 128539186 c i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 532422 1 + 6255621 c i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4587949 1 - 8658521 T i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 436004 1 - 9212255 c i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2851116 1 + 4466143 c i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1559205 1 + 5364348 c i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33141667 1 - 38964690 c i canFam3.chr26 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6702082 1263 - 9870158 I e dasNov3.JH568189 819171 0 - 1116856 C e otoGar3.GL873618 4277822 0 + 7922563 C e calJac3.chr9 114792439 0 + 124281992 C a score=1371991.000000 s hg38.chr12_KI270834v1_alt 46155 179 + 119498 Accaggaatggtggtttgtgcctggtagtcccagctactcaagagactgaggaagaagggtcacttgaggctggtaattcaaggctgcagtgagctatgattgtgcaccactgcactccaacctgggcaacagagcaagaccctgtctcctaaaa--------------at-agcaaaacaaaaa----caccctgat s panTro5.chr12 127332192 179 + 137163284 Accaggaatggtggtttgtgcctggtagtcccagctactcaagagactgaggaagaagggtcacttgaggctggtaattcaaggctgcagtgagctatgattgtgcaccactgcactccaacctgggcaacagagcaagaccctgtctcctaaaa--------------at-agcaaaacaaaaa----caccctgat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683026 179 + 135337776 Accaggaatggtggtttgtgcctggtagtcccagctactcaagagactgaggaagaagggtcacttgaggctggtaattcaaggctgcagtgagctatgattgtgcaccactgcactccaacctgggcaacagagcaagaccctgtctcctaaaa--------------at-agcaaaacaaaaa----caccctgat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8196409 179 - 8369578 accaggaatggtggtttgtaactggtagtcccagctactcaagagactgaggaagaagggtcacttgaggctggtaattcaaggctgcagtgagctatgattgtgcaccactgcactccaacctgggcaacagagcaagaccctgtctcctaaaa--------------at-agcaaaacaaaaa----caccctgat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844500 196 + 106955855 gccaggaatggtggtttgtgcctggtagacccagctactcaagagactgaggaagaaggatcacttgaggctggtaattcaaggctgcagtgagctatgattgtgcaccactgcactccagcctgggcaacagagcaagaccctgtctcCTAAAaaaacaaaacaaaacaa-aacaaaacaaaaAAAc-caccctgat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123969637 178 + 133663169 gccaggcatggtgatttgtgcctggtagtcccagctactcaagaggctgat---gaaggatca-ctgaggctgtgaattcacagctgcagtgagctatgatcgcacatcactgcactccagcctgggcaacagagcaagaccctatctcctaaaa--------------at--aaaaaaaaacaaaacgcaccctgat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128217012 179 + 137757926 gccaggcatggtgatttgtgcctggtagtcccagctactcaagaggctgat---gaaggatca-ctgaggctgtgaattcacagctgcagtgagctatgatcgcacatcactgcactccagcctgggcaacagagcaagaccctatctcctaaaa--------------at-aaaaaaaaaacaaaacgcaccctgat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10616912 179 - 16319837 gccaggcatggtgatttgtgcctggtagtcccagctactcaagaggctgat---gaaggatca-ctgaggctgtgaattcacagctgcagtgagctatgatcgcacatcactgcactccagcctgggcaacagagcaagaccctatctcctaaaa--------------at-aaaaaaaaaacaaaacgcaccctgat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12239370 179 + 20526591 gccaggcgtggtggtttgtgcctggtagtcccagctactcaagaggctgat---gaaggatca-ctgaggctgtgaattcacggctgcagtgagctatgatcgcacatcactgcactccagcctgggcaacagagcaagaccctatctcctaaaa--------------at-aaaaaaaaaacaaaacgcatcctgat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119212014 181 + 128539186 accaggcatggtggtttgtgcctggtagtcccagctactcaagaggctgat---gaaggatcacctgaggctgggaattcacggctgcagtgagctatgatcgcacatcactgcactccagcctgggcaacagagcaagaccctatctcctaaaa--------------ataaaaaaaaaaaaaaaatgcaccctgat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 532423 180 + 6255621 gccaggcatggtggtttgtgcctggtagtcccagctactcaagaggctgat---gaaggatcacctgaggctgggaattcacggctgcagtgagctatgattgcacatcactgcactccagcctgggcaacagagcaagaccctatctcctaaaa--------------at-aaaaaaaatacaaaacgcaccctgat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4587950 180 - 8658521 gccaggcatggtggtttgtgcctggtagtcccagctactcaagaggctgatgaagaaggatcacctgaggctgggaatt-acggctgcagtgagctatgatcgcacatcactgcactccagcctgggcaacagagcaagaccctatctcctaaaa--------------at---aaaaaaaacaaaaaGTGccctgat i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 436005 180 - 9212255 accaggcatggtgtcttgtgtctggtagtcccagctactcaagaggctgaggcaggaggaccacttgaggctgggaattcaaggctgcagtgagctatgaccgagtgacagtgcacgccagcctgggcaacagagcaagtccctacctcttaaaa--------------at-aagaaaacaaaaa---Gcaccctgat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2851117 180 + 4466143 accaggtgtggtgacttgtgcctggtagtcccagttattcaagaggctgaggcaggaggaccacttgaggctgggaattcaaggctgcagtgagccatgaccgtgtaccactgcactccagcctgggcaacagagcacgtccctacctcttaaaa--------------at-aagaaaacaaaaa---Gcaccctgat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1559206 179 + 5364348 gccaggcatggtgtcttgtgcctggtaatcccagctactcaagaggctgaggcaggaggaccccttgaggctgggaatgcaaggctgcagtgagctatgaccgcataccactgcacaccagcctgggcaacagagcaagt-cctacctcttaaaa--------------ac-aagaaaacaaaaa---gcgccctgat i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6702082 1263 - 9870158 I e dasNov3.JH568189 819171 0 - 1116856 C e canFam3.chr26 33141668 0 - 38964690 C e otoGar3.GL873618 4277822 0 + 7922563 C e calJac3.chr9 114792439 0 + 124281992 C a score=10035.000000 s hg38.chr12_KI270834v1_alt 46334 1 + 119498 c s panTro5.chr12 127332371 1 + 137163284 c i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683205 1 + 135337776 c i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8196588 1 - 8369578 c i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844696 1 + 106955855 t i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123969815 1 + 133663169 c i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128217191 1 + 137757926 c i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10617091 1 - 16319837 c i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12239549 1 + 20526591 c i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119212195 1 + 128539186 c i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 532603 1 + 6255621 c i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4588130 1 - 8658521 c i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 436185 1 - 9212255 c i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2851297 1 + 4466143 c i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1559385 1 + 5364348 c i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4277822 1 + 7922563 c i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6702082 1263 - 9870158 I e dasNov3.JH568189 819171 0 - 1116856 C e canFam3.chr26 33141668 0 - 38964690 C e calJac3.chr9 114792439 0 + 124281992 C a score=4444169.000000 s hg38.chr12_KI270834v1_alt 46335 470 + 119498 taccaaattggaaactctggggaatggagcccagcaaggtgtgtggcacaaaccctgcaggtggagctgatgcataattagttaagtgtgagaaccactAATCAAGGAGCTCTCGCCAGC----CTAAGC--AT---GGCA---GGAGGGCCTGAGGACACA-----TGCATGA--------------GCATCCAGGGGGCTTCCCTCACCCTTCCTGCCGGCAGTTAGTCCCAAAGCCTGAACCACTT---GTTCATGCTCTCTTTGACCTATTT----AGATACAGCCAGCATGATAGTGATTTATG-TTTGAATA--------TTGTCATATTGaaaatactgttggatattgcatctcatacgatgcaatagctctatgaagtagtcctaagagatgccattacgatcgtcttacaagtgag--aaaaacgaggctctgaaaggttgaatgactttttggaag-tcgccttgctagaa--ctgtgcagaa---acaagacccTCAGTCTACTTTCTTGTAT s panTro5.chr12 127332372 470 + 137163284 taccaaattggaaactctggggaatggagtccagcaaggtgtgcggcacaaaccctgcaggtggagctgatgcataattagttaagtgtgagaaccactAATCAAGGAGCTCTCGCCAGC----CTAAGC--AT---GGCA---GGAGGGCCTGAGGACACA-----TGCATGA--------------GCATCCAGGGGGCTTCCCTCACCCTTCCTGCCGGCAGTTAGTCCCAAAGCCTGAACCACTT---GTTCATGCTGTCTTTGACCTATTT----AGATACAGCCAGCATGATAGTGATTTATG-TTTGAATA--------TTGTCATATTGAAAATACTGTTGGATATTGCatctcatacgatgcaatagctctatgaagtagtcctaagagatgccattacgatcgtcttacaagtgag--aaaaacgaggctctgaaaggttgaatgactttttggaag-tcgccttgctagaa--ctgtgcagaa---acaagacccTCAGTCTACTTTCTTCTAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683206 470 + 135337776 taccaaattggaaactctggggaatggagtccagcaaggtgtgcggcacaaaccctgcaggtggagctgatgcataattagttaagtgtgagaaccactAATCAAGGAGCTCTCGCCAGC----CTAAGC--AT---GGCA---GGAGGGCCTGAGGACACA-----TGCATGA--------------GCATCCAGGGGGCTTCCCTCACCCTTCCTGCCGGCAGTTAGTCCCAAAGCCTGAACCACTT---GTTCATGCTGTCTTTGACCTATTT----AGATACAGCCAGCATGATAGTGATTTATG-TTTGAATA--------TTGTCATATTGaaaatactgttggatattgcatctcatacgatgcaatagctctatgaagtagtcctaagagatgccattacgatcgtcttacaagtgag--gaaaacgaggctctgaaaggttgaatgactttttggaag-tcaccttgctagaa--ctgtgcagaa---acaagaccctcagtctactttcttctaT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8196589 470 - 8369578 taccaaattggaaactctggggaatggagcccaacaaggtgtgtggcacaaaccctgcaggtggagctgatgcataattagttaagtgtaagaaccactAATCAAGGAGCTCTCGCCAGC----CTAAGC--AT---GGCA---GGAGGGCCTGAGGACACA-----TGCGTGA--------------GCATCCAGGGGGCTTCCCTCACCCTTCCTGCCGGCAGTTAGTCCCAAAGCCTGAACCACTT---GTTCATGCTCTCTTTGACCTATTT----AGATACAGCCAGCATGATAGTGATTTATG-TTTGAATA--------TTGTCATATTGaaaatactgttggatattgcatctcatacgatgcagtagctctatgaagtagtcctaagagatgccattacgatcgtcttacaagtgag--aaaaacgaggctctgaaaggttgaatgactttttggaag-tcgccttgctagaa--ctgtgcagaa---acaagaccctcagtctactttcttctat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97844697 466 + 106955855 taccaaattggaaactctggggaagggagcccagcaaggtgtgtggcacaagccctgcaggtggagctgaggcataattagttaagtgtgagaaccactAATCAAGGAGCTCTCGCCAGC----CTAAGC--AT---GGCA---GGAGGGCCTGAGGACACA-----TGCGTGA--------------GCATCCAGGGGGCTTCCCTCACCCTTCCTGCCGGCAGTTAGTCCCAAAGCTTGAACCCCTT---GTTCATGCTCTCTTTGACCTATTT----AGATACAGCCAGCATGATAGTGATTTATG-TTTGAATA--------TCGTCATATTGAAACTACTGTTGGAtattgcatctcatactacgcagtagctctatgaagtagtccaaagagatgccattacgatcatcttacaagtgag--aaaaacgaggctc----aggttgaatgactttttggaag-tcgccttgctagaa--gtgtgcagaa---acaagaccctcagtctactctcttctat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123969816 469 + 133663169 taccaaattggaaactctgggaaatggagcccagcaaggtgtgtggcacatgccctgcaggtggagctgatgcataattagttaagtgtgagaaccactACTCAAGGGGCTCTCGCCAGC----CTAAGC--AT---GGCA---GGAGGG-CTGAGGACACA-----TGCATGA--------------GCATCCAGGGGGCTTCCCTCACCCTTCCCACCAGCAGTTAGTCCCAAAGCCTGAACCACTT---GTTCGTGCTCTCTTTGACCTGTTT----CGATACAGCCAGCATGATAGTGATTTATG-TTTGAATA--------TTGTCATATTGaaaatactgttggatattgcatctcatacgatgcaattactctatgaagtagtccaaaaagatgtcattacaatcgtcttacaagtgag--aagaacaaggctctgaaaggttgaatgactttttggaag-tcaccttgctagaa--ctgtgcagaa---acaagaccctcagtctactttcttctat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128217192 469 + 137757926 taccaaattggaaactctgggaaatggagcccagcaaggtgtgtggcacatgccctgcaggtggagctgatgcataattagttaagtgtgagaaccactACTCGAGGGGCTCTCGCCAGC----CTAAGC--AT---GGCA---GGAGGG-CTGAGGACACA-----TGCATGA--------------GCATCCAGGGGGCTTCCCTCACCCTTCCCACCAGCAGTTAGTCCCAAAGCCTGAACCACTT---GTTCGTGCTCTCTTTGACCTGTTT----CGATACAGCCAGCATGATAGTGATTTATG-TTTGAATA--------TTGTCATATTGaaaatactgttggatattgcatctcatacgatgcaattactctatgaagtagtccaaaaagatgtcattacaatcgtcttacaagtgag--aagaacaaggctctgaaaggttgaatgactttttggaag-tcaccttgctagaa--ctgtgcagaa---acaagaccctcagtctactttcttctaT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10617092 469 - 16319837 taccaaattggaaactctgggaaatggagcccagcaaggtgtgtggcacatgccctgcaggtggagctgatgcataattagttaagtgtgagaaccactACTCAAGGGGCTCTTGCCAGC----CTAAGC--AT---GGCA---GGAGGG-CTGAGGACACA-----TGCATGA--------------GCATCCAGGGGGCTTCCCTCACCCTTCCCACCAGCAGTTAGTCCCAAAGCCTGAACCACTT---GTTCGTGCTCTCTTTGACCTGTTT----CGATACAGCCAGCATGATAGTGATTTATG-TTTGAATA--------TTGTCATATTGaaaatactgttggatattgcatctcatacgatgcagttactctatgaagtagtccaaaaagatgtcattacaatcgtcttacaagtgag--aagaacaaggctctgaaaggttgaatgactttttggaag-tcaccttgctagaa--ctgtgcagaa---acaagaccctcagtctactttcttctat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12239550 469 + 20526591 taccaaattggaaactctgggaaatggagcccagcaaggtgtgtggcacatgccctgcaggtggagctgatgcataattagttaaatgtgagaaccgctACTCAAGGAGCTCTCGCCAGC----CTAAGC--AT---GGCA---GGAGGG-CTGAGGACACA-----TACATGA--------------GCATCCAGGGGGCTTCCCTCACCCTTCCCACCAGCAGTTAGTCCCAAAGCCTGAACCACTT---GTTCGTGCTCTCTTTGACCTGTTT----CGATACAGCCAGCATGATAGTGATTTATG-TTTGAATA--------TTGTCATATTGaaaatactgttggatattgcatctcatacgatgcaattactctatgaagtagtccaaaaagatgtcattacaatcgtcttacaagtgag--aagaacaaggctctgaaaggttgaatgactttttggaag-tcgccttgctagaa--ctgtgcagaa---acaagaccctcagtctactttcttctat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119212196 469 + 128539186 taccaaattggaaactctgggaaatggagcctagcaaggtgtgtggcacatgccctgcaggtggagctgatgcataattagttaagtgtgagaaccactACTCAAGGAGCTCTCGCCAGC----CTAAGC--AT---GGCA---GGAGGG-CTGAGGACACA-----TGCATGA--------------GCATCCAGGGGGCTTCCCTCACCCTTACCACCAGCAGTTAGTCCCAAAGCCTGAACCACTT---GTTCGTGCTCTCTTTGACCTGTTT----CGATACAGCCAGCatgatagtaatttatg-tttgaata--------ttgtcatattgaaaatactgttggatattgcatctcatacgatgcaattactctatgaagtagtccaaaaagatgtcattacaatcgtcttacaagtgag--aagaacaaggctctgaaaggttgaatgactttttggaag-tcgccttgctagaa--ctgtgcagaa---acaagaccctcagtctactttcttctaT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 532604 469 + 6255621 taccaaattggaaactctgggaaatggagcccagcaaggtgtgtggcacatgccctgcaggtggagctgatgcataattagttaagtgtgagaaccactACTCAAGGAGCTCTCGCCAGC----CTAAGC--AT---GGCA---GGAGGG-CTGAGGACACA-----TGCATGA--------------GCATCCAGGGGGCTTCCCTCACCCTTCCCACCAGCAGTTAGTCCCAAAGCCTGAACCACTT---GTTCGTGCTCTCTTTGACCTGTTT----CGATACAGCCAGCATGATAGTGATTTATG-TTTGAATA--------TTGTCATATTGaaaatactgttggatattgcatctcatacgatgcaattactctatgaagtagtccaaaaagatgtcattacaatcgtcttacaagtgag--aagaacaaggctctgaaaggttgaatgactttttggaag-tcgccttgctagaa--ctgtgcagaa---acaagaccctcagtctactttcttctaT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4588131 469 - 8658521 taccaaattggaaactctgggaaatggagcccagcaaggtgtgtggcacatgccctgcaggtggagctgatgcataattaattaagtgtgagaaccactACTCAAGGAGCTCTCGCCAGC----CTAAGC--AT---GGCA---GGAGGG-CTGAGGACACA-----TGCATGA--------------GCATCCAGGGGGCTTCCCTCACCCTTCCCACCTGCAGTTAGTCCCAAAGCCTGAACCACTT---GTTCATGCTCTCTTTGACCTGTTT----AGATACAGCCAGCATGATAGTGATTTATG-TTTGAATA--------TTGTCATATTGaaaatactgttggatattgcatctcatacgatgcaattgctctatgaagtagtccaaaaagatgtcattacaatcatcttacaagtgag--aagaacaaggctctgaaaggttgaatgactttttggaag-tcgccttgctagaa--ctgtgcagaa---acaagaccctcagtctactttcttctaT i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 436186 471 - 9212255 tacctaattggaaactctggggaatggagccccacaaagtgtgtggcaca-gccctgcaggtggagctgatgtataattagttaagtgtgagaaccactgAAGAAGGAGCTCTCACCAGC----CTCAGCACGT---GGCA---AGAGGACCGGAGGACACA-----TGCGTGA--------------GCATCCAGGGGGCGTCCCTCACCTTTCCCTCCAGCACTTAGTCCCAAAGCATGAACCACTT---GTTCCTGCTCTCTTTGACCTCTTT----AGATACAGCCAGTGCGATCATGATttatg-tttgaata--------ttgtcatattgcaaatgctgttagatattgcatctcatacaatgcagtcaccctgtgaagtagtccaaagagatggcattacagtcatcttgcaagtgag--aaaaacgaggctccgaaaggttgaatgactttttggaag-tcgccttgctagaa--ctgtgcagaa---acaagacccTCAGTCCACTTTCCTCTAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2851298 473 + 4466143 tacctaattggaaactctggggaatggagccccgcaaggtgtgtggcaca-gccctgcaggtggagctgatgcataattagttaagtgtgagaaccactAATGAAGGAGCTCTCACCAGC----CTCAGCGTGT---GGCA---GGAGGACCTGAGGACACA-----CGCGTGA--------------GCATCCAGGGGGCATCCCTCACCTTTCCCTCCAGCACTTAGTCCCAAAGCGTGAACCACTTGTAGTCCATGCTCTCTTTGACCTCTTT----AGATACAGCCAGCGCGATAGTGATTTATG-TTTGAATA--------TTGTCATATTGaaaatgctgttaggtattgcatctcatacaatgcaatcactctgtgaagttgtccaaagagatggcattacaatcatcttacaagagag--aaaaacgaggctccgaaaggttgaacgac-ttttggaag-tcgccttgctagaa--ctgtgcagaa---acaagaccctcagtccactttcttctat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1559386 451 + 5364348 tacctaattggaaactctggggaatggagcccagcaaggtgtg-ggcaca-gccctgcaggtggagctgatgcatagttagttaagtgtgagaaccactAATGAAGGAGCTCTCACCAGC----CTCAGCGCAT---GGCA---AGAGGACCTGAGGGGACA-----CGCATGA--------------GCATCCAGGGGGCATCCCTCACCTGTCCCTCCAGCACTTAGTCCCAAAGCGTGA--------------------------ACCTCTTT----AGATACAGCCAGCGCGATAGTGATttacg-tttgaata--------ttgtcatattgaaaatgctgttaggtattgcatctcatccaatgcaatcactctgtgaactagtccaaagagatggcattacaatcatcttacaagtgag--aaaaacgaggctccgaaaggttgaatgactttttggaag-tcgcTTGATATGAATCCTGTGCAGGAAACACAAGA-CCTCAGTCACTTTCTTCCTCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4277823 457 + 7922563 tattcaattggaaactctgggga---tggcccagt--gctgtgtggctcaagcctgcctggtgccgctggcgtg----tggtgaagcatgggaactgctACCCCA-AAGCTCTCAGCAGCCCCTCTAAGA--ACACGAACA---AGAGGGCTCAAGGATGCG-----AGAGTGACACATGTCACACTTGTGTGAGAGGGGCTACCCTCACCTTTCTCTCCA----------CCAACTCCTGG-----TT---GTTTCTGCTGTCTTTGACCTATTT----GTG------AAGCATGCTGGGACTCTGTGTTTTGAGTG--------TTG-----TTGAAAATGTCATTGTGCATCACATCCCACATGATATAGTCAGTctttgaagaagtccaaatagatgtcattacaatcagattgtaggggaggaaaaaatgaaattctggaa-gttaaatgactttttggagg-tcacctaactagaa--ccgtgcagag---ccaagaccccttgtccactttctgcaaa i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33141668 464 - 38964690 tattgaatcggaaactctgagga-tggggccctgggacctgtgtggcactagacctccaggtgactcagggacacaattat----gtgcgagaacctctgGCCAGTGAAGTCTCAGTAAT-GCGCTAAGA--AG---CGCAATTGGCCGGCCCTGGGACGTGCTTTCTGCAC-A--------------GGGGCTGGGGGACCTCCCTCAACTTTCTCTCACGGGGTCAGTTCCACAG---------------G----TGCTCTCTCAGACCTACTTATTAAGATGCAGCAGGCATGGCAGTCACTTATG-GTTAAATATTATTACCTTGTCATACTGAAAATACCTCTGTGGacttcatctcctgtgataaaatcaccccatgacgtaatccaagcaggtgttattaaaattgtcttacagatgtg--aaaaatgaggctctagaaggttaaacctcattctggaggttcccctagccagaa--ctatgcagaa---ctaagaAC--------ACCCCTCCCTGT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6702082 1263 - 9870158 I e dasNov3.JH568189 819171 0 - 1116856 C e calJac3.chr9 114792439 0 + 124281992 C a score=1699025.000000 s hg38.chr12_KI270834v1_alt 46805 143 + 119498 GCCACATTGTCCCCAAGGCTCACATGCGACAATTCGCTATTGACTCATACAATCTGCTGAAAGGAAAGAGGAACTCTTACTTTAGCACTTAGAAAATAATGAAGCACAGTCTCACACTGGGTTATTAAAAAGTTAGTTCAGAG s panTro5.chr12 127332842 143 + 137163284 GCCACATTGTCCCCAAGGCTCACATGCGACAATTCACTATTGACTCATACAATCTGCTGAAAGGAAAGAGGAACTCTTACTTTAGCACTTAGAAAATAATGAAGCACAGTCTCACACTGGGTTATTAAAAAGTTAGTTCAGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683676 143 + 135337776 GCCACATTGTCCCCAAGGCTCACATGCGACAATTCACTATTGACTCATACAATCTGCTGAAAGGAAAGAGGAACTCTTACTTTAGCACTTAGAAAATAATGAAGCACAGTCTCACACTGGGTTATTAAAAAGTTAGTTCAGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197059 143 - 8369578 gccatattgtcccCAAGGCTCACATGTGACAATTCGCTATTGACTCATACAATCTGCTGAAAGGAAAGAGGAAGTCTTACTTTAGCACTTAGAAAATAATGAAGCACAGTCTCACACTGGGTTATTAAAAAGTTAGTTCAGAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845163 143 + 106955855 gccacattgtccctaaggctcaCATGTGACAATTCGCTGTTGGCTCATACAATCTGCTGAAAGGAAAGAGGAACTGTTGGTTTAGCATTTAGAAAATAATGAAGCACAGACTCACATTGGGTTATTAAAAAGTTAGTTCAGAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970285 143 + 133663169 gtcACATTGTCCCCAAGGCTCACATGTGACAATTCGCTATTGACTCATACAATCTGCTGAAAGGAAAGAGGAACTCTTGCTTTAGCACTTAGAAAATAATGAAGCACAGACTCACACTGGGTTATTAAAAAGTTAGTTCAGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128217661 143 + 137757926 GTCACATTGTCCCCAAGGCTCACATGTGACAATTCGCTATTGACTCATACAATCTGCTGAAAGGAAAGAGGAACTCTTGCTTTAGCACTTAGAAAATAATGAAGCACAGACTCACACTGGGTTATTAAAAAGTTAGTTCAGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10617561 143 - 16319837 gtcACATTGTCCCCAAGGCTCACATGTGACAATTCGCTATTGACTCATACAATCTGCTGAAAGGAAAGAGGAACTCTTGCTTTAGCACTTAGAAAATAATGAAGCACAGACTCACACTGGGTTATTAAAAAGTTAGTTCAGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240019 143 + 20526591 gtcACATTGTCCCCAAGGCTCACATGTGACAATTCGCTATTGACTCATACAATCTGCTGAAAGGAAAGAGGAACTCTTGCTTTAGCACTTAGAAAATAATGACGCACAGACTCACACTGGGTTATTAAAAAGTTAGTTCAGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119212665 141 + 128539186 GTCACATTGTCCCCAAGGCTCACATGTGACAATTCGCTATTGACTCATACAATCTGCTGAAAGGAAAGAGGAACTCTTGCTTTAGCACTTAGAAAATAATGAAGCACAGACTCACACTGGGTTATTAAAAAGTTAGTTCAG-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533073 143 + 6255621 GTCACATTGTCCCCAAGGCTCACATGTGACAATTCGCTATTGACTCATACAATCTGCTGAAAGGAAAGAGAAACTCTTGCTTTAGCACTTAGAAAATAATGAAGCACAGACTCACACTGGGTTATTAAAAAGTTAGTTCAGAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4588600 143 - 8658521 GTCACATTGTCCCCAAGGCTCACATGTGACAATTCGCTATTGACTCATACAATCTGCCGAAAGGAAAGAGGAACTCTTGCTTTAGCACTTAGAAAATAATGAAGCACAGACTCACACTGGGTTATTAAAAAGTTAGTTCAGAG i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 436657 143 - 9212255 GCCACTTTGTCCCTAAGGCTCACGTGTGACAATTGGCTGTTGACTCATACAATCTGCTGAAAGGAAAGAGGAATTCTTCCTTCAGCACTTACAAAATAACGAAGCGCTGACTCACAGTGGATTATTAAAAAGTTAGTCCAGAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2851771 143 + 4466143 gccacattgtccctaaggctcaTGTGCGACAATTGGCTGTTGACTCATACAATCTGCTGAAAGGAAAGAGGAATTCTTGCTTTATCACTTGCAAAATAATGAAGCGCTGACTCACACTGGATTATTAAAAAGTTAGTCCAGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1559837 141 + 5364348 GCCACA-TGTCCCTAAGGCTCACATGTGACAATTGGCTGTTGACTCATACAATCTGCTGAAAGGAAAGAGGAATTACTGCTT-AGCACTTACAAAATAATGAAGCACTGACTCACACTGGATTATTAAAAAGTTAGTCCAGAG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6703345 143 - 9870158 gccACGTCGTCCCCAAGGCCCACATACAGCAACTCGTTATTGGCTCATAGAATGTGCCAAAGGGAAAGAGGAATTCTTGCTTTAGCACTTAAAGAATAACGAAGCACAGAGCCACACTGGGTTATGCAAAGGTTAGTCCAGGG i proCoq1.NW_012154285v1 I 1263 C 0 s otoGar3.GL873618 4278280 143 + 7922563 gccACATTGTCCCTAAGGCCCATACACAGAAACTCATTATTGGCTCATAGAATCTGCCAAAAGGAAAGTGGAATTCTTGCTTTAGAACTTGAAAAATAATAAAGCACAGACCCACGCTATGTCATCGAAGGGTTAATTTAGAG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33142132 108 - 38964690 -CCACA-GGCGCCCAAGGCCCACACGCAGCAACTCACTGTTGCCTCATATAACCTGCCAAAGGTGAAG-----------------------------AATGAAGTACAGACACACAGTGGATTATAGAAAAGTT----CAGAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819171 127 - 1116856 GCCATGTTGCTCCCAAGGCCCACAAGTGGCAGTTTGTTGTTGGTTCAAACTATCTGCCAGAAAGAAAGAGAAATCCTTGCTTAAGCA-TGGAAAAATA---------------ACACTGGGTTATGAAAATCTTAGTTCAAAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e calJac3.chr9 114792439 0 + 124281992 C a score=218117.000000 s hg38.chr12_KI270834v1_alt 46948 21 + 119498 GCCAATGGATTTGCAAAATAG s panTro5.chr12 127332985 21 + 137163284 GCCAATGGATTTGCAAAATAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683819 21 + 135337776 GCCAATGGATTTGCAAAATAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197202 21 - 8369578 GCCAATGGATTTGCAAAATAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845306 21 + 106955855 GCCAATGGATTTGCAAAATAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970428 15 + 133663169 ------GGATTTGCAAAATAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128217804 15 + 137757926 ------GGATTTGCAAAATAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10617704 15 - 16319837 ------GGATTTGCAAAATAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240162 15 + 20526591 ------GGATTTGCAAAATAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119212806 6 + 128539186 ---------------AAATAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533216 15 + 6255621 ------GGATTTGCAAAATAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4588743 15 - 8658521 ------GGATTTGCAAAATAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792439 21 + 124281992 GCCAGTAGATTTGCAAAATAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 436800 21 - 9212255 GCCAGTAGATCTGCAAAATCG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2851914 21 + 4466143 GCCAGTAGATTTGCAAAATAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1559978 21 + 5364348 GCCAATAGATTTGCAAAATAG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6703488 21 - 9870158 ACCAGTGACCTTGCAAAATAG i proCoq1.NW_012154285v1 C 0 I 34 s otoGar3.GL873618 4278423 21 + 7922563 ACCAATGAGTTTGTAAAATAG i otoGar3.GL873618 C 0 I 2 s canFam3.chr26 33142240 21 - 38964690 CCCAGTGAATTTGCAAAATTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819298 21 - 1116856 ACCAGTATATTAGCAAAATAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I a score=131430.000000 s hg38.chr12_KI270834v1_alt 46969 12 + 119498 TTGCTAGCTTAT s panTro5.chr12 127333006 12 + 137163284 TTGCTAGCTTAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683840 12 + 135337776 TTGCTAGCTTAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197223 12 - 8369578 TTGCTAGCTTAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845327 12 + 106955855 TTGCTAGCTTAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970443 12 + 133663169 TTGCTAGCTTGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128217819 12 + 137757926 TTGCTAGCTTGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10617719 12 - 16319837 TTGCTAACTTGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240177 12 + 20526591 TTGCTAGCTTGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119212812 12 + 128539186 TTGCTAGCTTGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533231 12 + 6255621 TTGCTAGCTTGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4588758 12 - 8658521 TTGCTAGCTTGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792460 12 + 124281992 ATGTTAGTCTCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 436821 12 - 9212255 ATGTTAGCTTAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2851935 12 + 4466143 ATGTTAGCTTAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1559999 12 + 5364348 ATGTTAGCTTAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4278446 12 + 7922563 ATGGTGGCTTAT i otoGar3.GL873618 I 2 I 7199 s canFam3.chr26 33142261 12 - 38964690 ATGGTAGCTCAC i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 819319 12 - 1116856 ATGGTAGCTTAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6703509 34 - 9870158 I a score=59619.000000 s hg38.chr12_KI270834v1_alt 46981 6 + 119498 TTGCAA s panTro5.chr12 127333018 6 + 137163284 TTGCAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683852 6 + 135337776 TTGCAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197235 6 - 8369578 TTGCAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845339 6 + 106955855 GTGCAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970455 6 + 133663169 GTGCAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128217831 6 + 137757926 GTGCAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10617731 6 - 16319837 GTGCAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240189 6 + 20526591 GTGCAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119212824 6 + 128539186 GTGCAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533243 6 + 6255621 GTGCAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4588770 6 - 8658521 GTGCAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792472 6 + 124281992 GTGCAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 436833 6 - 9212255 GTGCAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2851947 6 + 4466143 GTGCAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1560011 6 + 5364348 GTGCAA i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33142274 5 - 38964690 GTCCA- i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 819331 6 - 1116856 GTTCAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6703509 34 - 9870158 I e otoGar3.GL873618 4278458 7199 + 7922563 I a score=143577.000000 s hg38.chr12_KI270834v1_alt 46987 15 + 119498 ATGTTTACTGCTGCT s panTro5.chr12 127333024 15 + 137163284 ATGTTTACTGCTGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683858 15 + 135337776 ATGTTTACTGCTGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197241 15 - 8369578 ATGTTTACTGCTGCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845345 15 + 106955855 ATGTTTACTGCTGCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970461 14 + 133663169 ATGTTGACTGCTG-T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128217837 14 + 137757926 ATGTTGACTGCTG-T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10617737 14 - 16319837 ATGTTGACTGCTG-T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240195 14 + 20526591 ATGTTGACTGCTG-T i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119212830 15 + 128539186 ATGTTGACTGCTGCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533249 14 + 6255621 ATGTTGACTGCTG-T i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4588776 15 - 8658521 ATGCTTACTGCTGCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792478 15 + 124281992 ATGTTTATTGCTGCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 436839 15 - 9212255 ATGTTTATTGTTGCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2851953 15 + 4466143 ATGTTTATTGCTGCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1560017 15 + 5364348 ATGTTTATTGCTGCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4285657 15 + 7922563 ATATTTACTACTGAC i otoGar3.GL873618 I 7199 C 0 s canFam3.chr26 33142279 15 - 38964690 GCATTTCCCGCTGGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819337 15 - 1116856 ACATTTACTGTTGAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I e proCoq1.NW_012154285v1 6703509 34 - 9870158 I a score=236661.000000 s hg38.chr12_KI270834v1_alt 47002 20 + 119498 ACCCTGGGGAAAAAGCTGG-------C s panTro5.chr12 127333039 20 + 137163284 ACCCTGGGGAAAAGGCTGG-------C i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683873 20 + 135337776 ACCCTGGGGAAAAGGCTGG-------C i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197256 20 - 8369578 ACCCTGGGGAAAAGGCTGG-------C i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845360 20 + 106955855 ACCCTGAAGAAAAGGCTGG-------C i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970475 20 + 133663169 ACCCTGAAGAAAAGGCTGG-------C i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128217851 20 + 137757926 ACCCTGAAGAAAAGGATGG-------C i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10617751 20 - 16319837 ACCCTGAAGAAAAGGATGG-------C i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240209 20 + 20526591 ACCCTGAAGAAAAGGCTGA-------C i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119212845 20 + 128539186 ACCCTGAAGAAAAGGCTGG-------C i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533263 20 + 6255621 ACCCTGAAGAAAAGACTGG-------C i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4588791 20 - 8658521 ACCCTGAAGAAAAGGCTGG-------C i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792493 20 + 124281992 ACCCTGAAGAAAAGGCCAG-------C i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 436854 20 - 9212255 ACCCTGAAGAAAAGGCCAG-------C i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2851968 20 + 4466143 ACCCTGAAGAAAAGGCCAA-------C i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1560032 20 + 5364348 ACCCTGAAGAAAAGACCAG-------C i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6703543 20 - 9870158 ACTCTGCAGAGAAAGCTGA-------C i proCoq1.NW_012154285v1 I 34 C 0 s otoGar3.GL873618 4285672 27 + 7922563 GCCCTGCAGAAGAAGTGGAATAATCTC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33142294 20 - 38964690 ACTGTGAAGAAACAACCGC-------C i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819352 20 - 1116856 GCCATGAAGAAAAGATGAG-------T i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I e mm10.chr5 124798341 519 + 151834684 I a score=327699.000000 s hg38.chr12_KI270834v1_alt 47022 22 + 119498 TTTTCACATCATCTCTT--TCTGC s panTro5.chr12 127333059 22 + 137163284 TTTTCACATCATCTCTT--TCTGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683893 22 + 135337776 TTTTCACATCATCTCTT--TCTGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197276 22 - 8369578 TTTTCACATCATCTCTT--TCTGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845380 22 + 106955855 TTTTCACATCATCTCTT--TCTGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970495 22 + 133663169 TTTTCACATCATCTCTT--TCTAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128217871 22 + 137757926 TTTTCACATCATCTCTT--TCTGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10617771 22 - 16319837 TTTTCACATCATCTCTT--TCTGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240229 22 + 20526591 TTTTCACATCATCTCTT--TCTGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119212865 22 + 128539186 TTTTCACATCATCTCTT--TCTGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533283 22 + 6255621 TTTTCACATCATCTCTT--TCTGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4588811 22 - 8658521 TTTTCACATCATCTCTT--TCTGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792513 22 + 124281992 TTTTCACATCATCTCTT--TCTGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 436874 22 - 9212255 TTTTTACGTCATCTCTT--TCTGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2851988 22 + 4466143 TTTTCACGTCATCTCTT--TCTGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1560052 22 + 5364348 TTTTCATATCATCTCTT--TCTGC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6703563 22 - 9870158 CTTTTGAATCGTCTCTT--TCTGC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4285699 22 + 7922563 TTTTCGAATAATCTCTT--TTTGC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124798860 24 + 151834684 TTGTTATACCACCCTCTGCTCTGT i mm10.chr5 I 519 C 0 s canFam3.chr26 33142314 22 - 38964690 TTCTGGAATGATCCCTC--TCTGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819372 22 - 1116856 TTTTCAAATTCTCTCTC--TCTGT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9452749 1528 - 31815103 I a score=3093807.000000 s hg38.chr12_KI270834v1_alt 47044 154 + 119498 TTCAGATTGTGTTAATGGTCAACTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGAACCAAAGATACTTACGGCCCACCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCC s panTro5.chr12 127333081 154 + 137163284 TTCAGATTGTGTTAATGGTCAACTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGAACCAAAGATACTTACGGCCCACCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125683915 154 + 135337776 TTCAGATTGTGTTAATGGTCAACTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGAACCAAAGATACTTACGGCCCACCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197298 154 - 8369578 TTCAGATTGTGTTAATGGTCAACTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGAACCAAAGATACTTACGGCCCACCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845402 154 + 106955855 TTCAGATTGTGTTAATGGTCAACTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGAACCAAAGATACTTACGGCCCGCCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970517 154 + 133663169 TTCAGATTGTGTTAATGGTCAACTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGAACCAAAGATACTTACGGCCCGCCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128217893 154 + 137757926 TTCAGATTGTGTTAATGGTCAACTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGAACCAAAGATACTTACGGCCCGCCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10617793 154 - 16319837 TTCAGATTGTGTTAATGGTCAACTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGAACCAAAGATACTTACGGCCCGCCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240251 154 + 20526591 TTCAGATTGTGTTAATGGTCAACTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGAACCAAAGATACTTACGGCCCGCCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119212887 154 + 128539186 TTCAGATTGTGTTAATGGTCAACTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGAACCAAAGATACTTACGGCCCGCCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533305 154 + 6255621 TTCAGATTGTGTTAATGGTCAACTTCTCCTCCCGCACCACATCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGAACCAAAGATACTTACGGCCCGCCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4588833 154 - 8658521 TTCAGATTGTGTTAATGGTCAACTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGAACCAAAGATACTTACGGCCCGCCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792535 154 + 124281992 TTCAGATTGTGTTAATGGTCAGCTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAACTTAGAAGCAAATGTGGAAAAGCGAACTAAAGATACTTATGGTCCGCCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 436896 154 - 9212255 TTCAGATTGTGTTAATGGTCAACTTCTCCTCCCGTACCACGTCCATGGATATCCAAAGAAACTTAGAAGCAAATGTGGAAAAGCGAACTAAAGATACTTACGGCCCGCCCATGGGAAAACGCCTTCTGGTGTTCATGGATGACATGAATATGCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2852010 154 + 4466143 TTCAGATCGTGTTAATGGTCAACTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAACTTAGAAGCAAATGTGGAAAAGCGAACTAAAGACACTTATGGCCCGCCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1560074 154 + 5364348 TTCAGATTGTGTTAATGGTCAGCTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGGAACTTAGAAGCAACTGTGGAGAAGCGAACTAAAGACACTTATGGCCCGCCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACGTGAATATGCC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9454277 154 - 31815103 TTCAGATCGTGTTAACGGTCAACTTCTCCTCCCGCACCACATCCCTGGACATCCAGAGAAATCTAGAGGCAAATGTGGAAAAGCGAACCAAAGACACTTATGGGCCACCCATGGGCAAGCGCCTGCTGGTGTTCATGGACGACATGAACATGCC i micMur3.chr21 I 1528 I 144 s proCoq1.NW_012154285v1 6703585 154 - 9870158 TTCAGATTGTGTTAACGGTCAATTTCTCCTCCCGCACCACGTCCATGGATATCCAGAGAAATTTAGAGGCAAATGTGGAAAAGCGAACCAAAGACACTTACGGCCCGCCCATGGGAAAGCGCCTGCTGGTGTTCATGGACGACATGAACATGCC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4285721 154 + 7922563 TTCAGATTGTGTTAATGGTCAGTTTCTCCTCCCGCACCACATCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGGACCAAGGACACTTACGGCCCGCCAATGGGGAAACGCCTGCTGGTGTTCATGGATGACATGAACATGCC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124798884 154 + 151834684 GACAGATTGTTCTGATAGTCAACTTCTCCTCTCGGACCACATCCCTGGACATCCAGAGAAATCTGGAAGCCAATGTGGAGAAGCGGACTAAGGACACGTATGGGCCGCCCATGGGGAAGCGCCTGCTGGTGTTCATGGATGACATGAACATGCC i mm10.chr5 C 0 C 0 s canFam3.chr26 33142336 154 - 38964690 TCCAGATTGTGTTAATGGCCAATTTCTCCTCCCGCACCACCTCTATGGATATCCAAAGAAATTTGGAAGCAAATGTGGAAAAACGAACCAAAGACACATATGGCCCACCCATGGGGAAGCGCCTCCTGGTGTTCATGGATGACATGAATATGCC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819394 154 - 1116856 CTCAGATTGTGTTAATGGTTAATTTCTCCTCCCGCACTACATCCTTGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAACGAACCAAAGACACTTACGGCCCACCCATGGGAAAACGCCTCCTGGTGTTCATGGATGACATGAATATGCC i dasNov3.JH568189 C 0 C 0 a score=160832.000000 s hg38.chr12_KI270834v1_alt 47198 13 + 119498 AAGGGTA--GTTTGA s panTro5.chr12 127333235 13 + 137163284 AAGGGTA--GTTAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684069 13 + 135337776 AAGGGTA--GTTAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197452 13 - 8369578 AAGGGTA--GTTAGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845556 13 + 106955855 AAGGGTA--GTTAGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970671 13 + 133663169 AAGGGTA--GTTAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218047 13 + 137757926 AAGGGTA--GTTAGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10617947 13 - 16319837 AAGGGTA--GTTAGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240405 13 + 20526591 AAGGGTA--GTTAGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213041 13 + 128539186 AAGGGTA--GTTAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533459 13 + 6255621 AAGGGTA--GTTAGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4588987 13 - 8658521 AAGGGTA--GTTAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792689 13 + 124281992 GAGGGTA--GTCAGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437050 13 - 9212255 GAGGGTA--GTCAGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2852164 13 + 4466143 GAGGGTA--GTCAGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1560228 13 + 5364348 GAGGGTA--GTCAGA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6703739 13 - 9870158 CAAGGTG--GTGGGA i proCoq1.NW_012154285v1 C 0 I 92 s otoGar3.GL873618 4285875 13 + 7922563 GAAGGTA--GTTGGA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124799038 13 + 151834684 AAAGGTG--AGCGGG i mm10.chr5 C 0 C 0 s canFam3.chr26 33142490 14 - 38964690 GAAGGTAGCGTCAG- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819548 10 - 1116856 AAAGGTA--GTT--- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454431 144 - 31815103 I a score=216060.000000 s hg38.chr12_KI270834v1_alt 47211 19 + 119498 CGCTCAAGCAGGTGGAGGG s panTro5.chr12 127333248 19 + 137163284 CGCTCAAGCAGGTGGAGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684082 19 + 135337776 CGCTCAAGCAGGTGGAGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197465 19 - 8369578 CGCTCAAGCAAGTGGAGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845569 19 + 106955855 CGCTCAAGCAGGTGGAGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970684 19 + 133663169 CGCTCAAGCAGGTGGAGGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218060 19 + 137757926 CGCTCAAGCAGGTGGAGGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10617960 19 - 16319837 CGCTCAAGCAGGTGGAGGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240418 19 + 20526591 CGCTCAAGCAGGTGGAGGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213054 19 + 128539186 CGCTCAAGCAGGTGGAGGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533472 19 + 6255621 CGCTCAAGCAGGTGGAGGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589000 19 - 8658521 CGCTCAAGCAGATGGAGGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792702 19 + 124281992 CGCTTCAGCTGGTGGAGGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437063 19 - 9212255 TGCTTCCGCAGGTGGAGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2852177 19 + 4466143 CGCTTCGGCAGGTGGAGGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1560241 19 + 5364348 CGCTTCCGCAGGTGGAGGG i aotNan1.NW_018491581v1 C 0 I 331 s otoGar3.GL873618 4285888 19 + 7922563 GGCTTCAGGAAGTGGGAAG i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124799051 19 + 151834684 CCTTACAGCGGCCAGAGAG i mm10.chr5 C 0 I 6 s canFam3.chr26 33142504 19 - 38964690 GGCTACAGAGTGGGGAGCG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819558 12 - 1116856 -------GAAGGAGGAGGG i dasNov3.JH568189 C 0 I 4 e micMur3.chr21 9454431 144 - 31815103 I e proCoq1.NW_012154285v1 6703752 92 - 9870158 I a score=481388.000000 s hg38.chr12_KI270834v1_alt 47230 57 + 119498 ATGGGTCAAGACA----------------------------------------------------------------------------GTGCTtgtgtttgcatgggtgtgtgtgtgtgt-TAGAA---GTGAGTA s panTro5.chr12 127333267 57 + 137163284 ATGGGTCAAGACA----------------------------------------------------------------------------GTGCTtgtgtttgcatgggtgtgtgtgtgtgt-TAGAA---GTGAGTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684101 57 + 135337776 ATGGGTCAAGACA----------------------------------------------------------------------------GTGCTtgtgtttgcatgggtgtgtgtgtgtgt-TAGAA---GTGAGTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197484 50 - 8369578 ATGGGTCAAGACA----------------------------------------------------------------------------GTGCTTGCGTTTGCATGGGTGTGTG--------TAGAA---GTGAGAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845588 55 + 106955855 ATGGGTCAAGACA----------------------------------------------------------------------------GTGCTTGTGTTTGCATGGGTGTGTG--TGTGT-TAGAA---GTGAGTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970703 55 + 133663169 ATGGGTCAAGACA----------------------------------------------------------------------------GTGCTTGTGTTTGCATGGGTGTGTG--TGTGT-TAGAA---GTGAGTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218079 55 + 137757926 ATGGGTCAAGACA----------------------------------------------------------------------------GTGCTTGTGTTTGCATGGGTGTGTG--TGTGT-TAGAA---GTGAGTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10617979 55 - 16319837 ATGGGTCAAGACA----------------------------------------------------------------------------GTGCTTGTGTTTGCATGGGTGTGTG--TGTGT-TAGAA---GTGAGTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240437 55 + 20526591 ATGGGTCAAGACA----------------------------------------------------------------------------GTGCTTGTGTTTGCATGGGTGTGTG--TGTGT-TAGAA---GTGAGTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213073 55 + 128539186 ATGGGTCAAGACA----------------------------------------------------------------------------GTGCTTGTGTTTGCATGGGTGTCTG--TGTGT-TAGAA---GTGAGTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533491 55 + 6255621 ATGGGTCAAGACA----------------------------------------------------------------------------GTGCTTGTGTTTGCATGGGTGTGTG--TGTGT-TAGAA---GTGAGTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589019 55 - 8658521 ATGGGTCAAGACA----------------------------------------------------------------------------GTGCTTGTGTTTGCATGGGTGTGTG--TGTGT-TAGAA---GTGAGTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792721 53 + 124281992 AGGGGCCCAGATG----------------------------------------------------------------------------GTGCCTGTGTTTGCATGGGGGTGTC----TGT-TAGAA---GTGAGTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437082 51 - 9212255 AGGGGCC--GATG----------------------------------------------------------------------------GTGCCTGTGTCTGTATGGGGGTGTG----TAT-TAGAA---GTGAGTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2852196 51 + 4466143 AGGGGCCGAGATG----------------------------------------------------------------------------GTGCCTGTGTTTGTATGGGGAGG------TGT-TAGAA---GTGAGTA i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4285908 55 + 7922563 ATGGGGCAAGATG----------------------------------------------------------------------------GTGCTTGTGGTCGTGTTGGGGTGTG--TGCAT-TTGGA---GTGAATG i otoGar3.GL873618 I 1 C 0 s mm10.chr5 124799076 128 + 151834684 ATGTGTGCAGAAGTTCGTGTCTTTTTAGGAtttttactttttaagactaattttaatctttatctatttattattttatttttgggtatgtgcctgtgtgtgtgtgtgtgtgtg--tgtgt----gt---gtgtgta i mm10.chr5 I 6 C 0 s canFam3.chr26 33142523 61 - 38964690 ATGGGGCAAGGCT--------------------------------------------------------------------------GTGTGCTTGTGTTTGTGTTGCTGCGTA--TGTGTATGGCATTCATGAGTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819574 52 - 1116856 AGGGGGCAGGGCA----------------------------------------------------------------------------GCGCTTCTCCTTGTGTTGGTGTGTG--CG----AGGGA---GCGAGCC i dasNov3.JH568189 I 4 C 0 e micMur3.chr21 9454431 144 - 31815103 I e proCoq1.NW_012154285v1 6703752 92 - 9870158 I e aotNan1.NW_018491581v1 1560260 331 + 5364348 I a score=130988.000000 s hg38.chr12_KI270834v1_alt 47287 13 + 119498 TGAGAACATTGAT s panTro5.chr12 127333324 13 + 137163284 TGAGAACATTGAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684158 13 + 135337776 TGAGAACACTGAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197534 13 - 8369578 TGAGAACATTGAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845643 13 + 106955855 TGAGAACATTGAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970758 13 + 133663169 TGAGAACGTTGAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218134 13 + 137757926 TGAGAACGTTGAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618034 13 - 16319837 TGAGAACGTTGAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240492 13 + 20526591 TGAGAACGTTGAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213128 13 + 128539186 TGAGAACGTTGAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533546 13 + 6255621 TGAGAACGTTGAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589074 13 - 8658521 TGAGAACATTGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792774 13 + 124281992 TGAGGACACTGAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437133 13 - 9212255 TGAGGACACTGAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2852247 13 + 4466143 TGAGGACATTGAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1560591 13 + 5364348 TGAGGACGTTGAT i aotNan1.NW_018491581v1 I 331 C 0 s otoGar3.GL873618 4285963 6 + 7922563 TGAGAG------- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124799204 13 + 151834684 tgtgtgtgatgat i mm10.chr5 C 0 I 56 s canFam3.chr26 33142584 13 - 38964690 GGAGAACATGTGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819626 13 - 1116856 CGGGGCCCCTGTC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454431 144 - 31815103 I e proCoq1.NW_012154285v1 6703752 92 - 9870158 I a score=283366.000000 s hg38.chr12_KI270834v1_alt 47300 26 + 119498 CTTTACCTCTGTGCAATGTCTGCAGG s panTro5.chr12 127333337 26 + 137163284 CTTTACCTCTGTGCAATGTCTGCAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684171 26 + 135337776 CTTTACCTCTGTGCAATGTCTGCAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197547 26 - 8369578 CTTTACCTCTGTGCAATGTCTGCAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845656 26 + 106955855 CTTTACCTCTGTGCAATGTCTGCAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970771 26 + 133663169 ATTTACCTCTGTGCAATGTCTGCAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218147 26 + 137757926 ATTTACCTCTGTGCAATGTCTGCAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618047 26 - 16319837 ATTTACCTCTGTGCAACGTCTGCAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240505 26 + 20526591 ATTTACCTCTGTGCAATGTCTGCAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213141 26 + 128539186 ATTTACCTCTGTGCAATGTCTGCAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533559 26 + 6255621 ATTTACCTCTGTGCAATGTCTGCAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589087 26 - 8658521 ATTTACCTCTGTGCAATGTCTGCAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792787 25 + 124281992 CTTTATCTCTGCACAATGTCT-CAGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437146 26 - 9212255 CTTTATCTCTGCACAACGTCTGCAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2852260 26 + 4466143 CTTTATCCCTGCACAACGTCTGCAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1560604 26 + 5364348 CTTTATCTCTGCACAATGTCTGCAGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4285969 20 + 7922563 ------CTCTGCATGGTGTCCACAGG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33142597 25 - 38964690 -CTTCATTCTGCATAACACCTGCAGG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819639 22 - 1116856 ----TGTTGTGCACAGTGGCGGCAAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454431 144 - 31815103 I e mm10.chr5 124799217 56 + 151834684 I e proCoq1.NW_012154285v1 6703752 92 - 9870158 I a score=17100.000000 s hg38.chr12_KI270834v1_alt 47326 1 + 119498 G s panTro5.chr12 127333363 1 + 137163284 G i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684197 1 + 135337776 G i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197573 1 - 8369578 G i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845682 1 + 106955855 G i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970797 1 + 133663169 G i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218173 1 + 137757926 G i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618073 1 - 16319837 G i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240531 1 + 20526591 G i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213167 1 + 128539186 G i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533585 1 + 6255621 G i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589113 1 - 8658521 G i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792812 1 + 124281992 G i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437172 1 - 9212255 G i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2852286 1 + 4466143 G i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1560630 1 + 5364348 G i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6703844 1 - 9870158 G i proCoq1.NW_012154285v1 I 92 C 0 s canFam3.chr26 33142622 1 - 38964690 G i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819661 1 - 1116856 G i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454431 144 - 31815103 I e mm10.chr5 124799217 56 + 151834684 I e otoGar3.GL873618 4285989 0 + 7922563 C a score=579230.000000 s hg38.chr12_KI270834v1_alt 47327 52 + 119498 TACAGGCTGCGGGGAGCC-----------AGCCTAAGGCAGAATG-----TACCTGG----------GATGCTCTTCT s panTro5.chr12 127333364 52 + 137163284 TACAGGCTGCGGGGAGCC-----------AGCCTAAGGCAGAATG-----TGCCTGG----------GATGCCCTTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684198 52 + 135337776 TACAGGCTGCGGGGAGCC-----------AGCCTAAGGCAGAATG-----TGCCTGG----------GATGCTCTTCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197574 52 - 8369578 TACAGGCTGCGGGGAGCC-----------AGCCTAAGGCAGAATG-----TGCCTGG----------GATGCTCTTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845683 52 + 106955855 TACAGGCTGCGGGGAGTC-----------AGCCTGGGGCAGAATG-----TGCCTGG----------GATGCTCTTCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970798 52 + 133663169 CGCAGGCTGCAGGGAGCC-----------AGCCTAGGGCAGAATG-----TGCCTGG----------GATGCTGTTCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218174 52 + 137757926 CGCAGGCTGCAGGGAGCC-----------AGCCTAGGGCAGAATG-----TGCCTGG----------GATGCTGTTCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618074 52 - 16319837 CGCAGGCTGCAGGGAGCC-----------AGCCTAGGGCAGAATG-----TGCCTGG----------GATGCTGTTCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240532 52 + 20526591 CGCAGGCTGCAGGGAGCC-----------ATCCTAGGGCAGAATG-----TACCTGG----------GATGCTGTTCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213168 52 + 128539186 TGCAGGCTGCAGGGAGCC-----------AGCCTAGGGCAGAATG-----TGCCTGG----------GATGCTGTTCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533586 52 + 6255621 CGCAGGCTGCAGGGAGCC-----------AGCCTAGGGCAGAATG-----TGCCTGG----------GATGCTGTTCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589114 52 - 8658521 CGCAGGCTGCAGGGAGCC-----------AGCCTAAGGCAGGATG-----TGCCTGG----------GATGCTGTTCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792813 52 + 124281992 TGCAGGCTGTGGGGAGCC-----------AGCCTAAGATAGAATG-----TGCCTGG----------GATGCTCTTCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437173 52 - 9212255 TGCAGGCTGTGGGGAGCC-----------AGCCTAGGGCAGGATG-----TGCCTGG----------GATGCTCTTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2852287 51 + 4466143 TGCAGGCTG-GGGGAGCC-----------AGCCTAGGGCAGGATG-----TGCCTGG----------GATGCTCTTCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1560631 52 + 5364348 TGCAGGCCGTGGGGAGCC-----------AGCCTAGGCCAGAATG-----TGCCTGG----------GATGCTCTTCC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6703845 48 - 9870158 TGCAGGCTGCGGGAAGCC-----------CGCCTGGG-CAGCGTG-----TTCCTGG----------GATGCCGG--- i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4285989 31 + 7922563 TGCGCACTGGGGGAAGCC-----------AGCCTGGT---GCATA--------------------------------- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124799273 75 + 151834684 tacaggtggttgtgagttgcctgtaatggagccgagaacagaactctgattatctggaggagcagcaggtgttct--- i mm10.chr5 I 56 C 0 s canFam3.chr26 33142623 49 - 38964690 TGCTGGCTATGGGGAGCC-----------AGCTTAGGAGACAGTG-----TTACTGG----------AGTGTTCT--- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819662 46 - 1116856 CGCATGGTGTGG-----------------GGCTTAGGAGAGAATA-----TTACTGA----------GATGCTCTTCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454431 144 - 31815103 I a score=792903.000000 s hg38.chr12_KI270834v1_alt 47379 63 + 119498 TA--CACAGAG-GGACCTTTCC----CTGACTGATCATGT-TCCTTAGTTTCTTAGAGGAGGGAA--------------GCAGGC s panTro5.chr12 127333416 63 + 137163284 TA--CACAGAG-GGACCTTTCC----CTGACTGATCATGT-TCCTTAGTTTCTTAGAGGAGGGAA--------------GCAGGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684250 63 + 135337776 TA--CACAGAG-GGACCTTTCC----CTGACTGATCATGT-TCCTTAGTTTCTTAGAGGAGGGAA--------------GCAGGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197626 63 - 8369578 TA--CACAGAG-GGACCTTTCC----CTGACTGATCATGT-TCCTTAGTTTCTTAGAGGAGGGAA--------------GCAGGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845735 63 + 106955855 TA--CACAGAG-GGACCTTTCC----CTGACTGATCATGT-TCCTTAGTTTCTTAGAGGAGGGAA--------------GCAGGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970850 63 + 133663169 TA--CACAGAG-GGACCTTGCC----CTGACTGATCACGT-TCCCTAGTTTCTTAGAGGAGGGAA--------------GCAGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218226 63 + 137757926 TA--CACAGAG-GGACCTTGCC----CTGACTGATCACGT-TCCCTAGTTTCTTAGAGGAGGGAA--------------GCAGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618126 63 - 16319837 TA--CACAGAG-GGACCTTGCC----CTGACTGATCACGT-TCCCTAGTTTCTTAGAGGAGGGAA--------------GCAGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240584 63 + 20526591 TA--CACAGAG-GGACCTTGCC----CTGACTGATCACGT-TCCCTAGTTTCTTAGAGGAGGGAA--------------GCAGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213220 63 + 128539186 TA--CACAGAG-GGACCTTGCC----CTGACTGATCACAT-TCCCTAGTTTCTTAGAGGAGGGAA--------------GCAGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533638 63 + 6255621 TA--CACAGAG-GGACCTTGCC----CTGACTGATCACGT-TCCCTAGTTTCTTAGAGGAGGGAA--------------GCAGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589166 63 - 8658521 TA--CACAGAG-TGACCTTGCC----CTGACTGATCACGT-TCCTTAGTTTCTTAGAGGAGGGAA--------------GCAGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792865 62 + 124281992 TA--CACAGAG-GGACCTT-CC----CTGACGGATCTTTT-TCCTTAGTTTCTTAGAGGAGGAAT--------------GCAGGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437225 62 - 9212255 TA--CACAGAG-GGACCTT-CC----CTGATGGATCTTGT-TCCTTAGTTTCTTGGAGGAGGAAT--------------GCAGGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2852338 62 + 4466143 TA--CACAGAG-GGACCTT-CC----CTGACGGATCTTGT-TCCTTAGTTTCTTAGAGGAGGAAT--------------GCAGGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1560683 63 + 5364348 TA--CACAGAGCGGAACTT-CC----CTGACGGATCTTGT-TCCTTAGTTTCTTAGAGGAGGAAT--------------GCAGGC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9454575 59 - 31815103 TA--CACGGAG-GGACCTATCC--------CTTACTGTGT-CCCTTAGCTTCCCAGaggaggaag--------------gcaggc i micMur3.chr21 I 144 C 0 s proCoq1.NW_012154285v1 6703893 62 - 9870158 TA--CACAGAG-GGACCTGTCC----CT-ACTGACCGTGT-CCCTTAGCTTCCCAGAGGAGGAAA--------------GCAGAC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4286020 53 + 7922563 -------------------------------TGTTCCTGC-TCTTTAGTTTCCTAGAGGAGGAAGgcaggcagcaggcagcaggc i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124799348 70 + 151834684 taaccactgag-ctacctctttagGTCTGTCTGCACGTGTGTCTTTAACTCCACATGGTGTGGAA--------------GCCAGC i mm10.chr5 C 0 I 87 s canFam3.chr26 33142672 61 - 38964690 TA--CACAGAG-GGACTTTTCC----CT-ACAGATTGTTC-TCCTTGCTTTCTTGAAGGA-GTAA--------------GCAGGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819708 60 - 1116856 TA--TACAGCC-GGACTTTTTC----CTTACTGGCTGTGT-CTCTGAGTTTCTTCGAGAA---AA--------------ACAGGC i dasNov3.JH568189 C 0 C 0 a score=1198122.000000 s hg38.chr12_KI270834v1_alt 47442 89 + 119498 AGCCAGCAGCCTTTGAA-CTAAATTCAGCATGTATTTGAG-GAAGTGGTTTCCAAAGGAG-CTCTTATTTAGA-TAATAATACTGTTGTTGGC s panTro5.chr12 127333479 89 + 137163284 AGCCAGCAGCCTTTGAA-CTAAATTCAGCATGTATTTGAG-GAAGTGGTTTCCAAAGGAG-CTCTTATTTAGA-TAATAATACTGTTGTTGGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684313 89 + 135337776 AGCCAGCAGCCTTTGAA-CTAAATTCAGCATGTATTTGAG-GAAGTGGTTTCCAAAGGAG-CTCTTATTTAGA-TAATAATACTGTTGTTGGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197689 89 - 8369578 AGCCAGCAGCCTTTGAA-CTAAATTCAGCATGTATTTGAG-GAAGTGGTTTCCAAAGGAG-CTCTTATTTAGA-TAGTAATACTGTTGTTGGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845798 86 + 106955855 AGCCAGCAGCCTTTGAA-CTAAATTCAGCATGTATTTGAG-GAAGTGGTTTCCAAAGGAG-CTCTTGTTTAGA----TAATACTGTTGTTGGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123970913 90 + 133663169 AGCTGGCAGCCTTTGAA-CTAAATTCAGTATGTATTTGAG-GAAGTAGTTTCTAAAGGAG-CTCTTCTTTAAATTAATAATACTGATGTTGGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218289 90 + 137757926 AGCTGGCAGCCTTTGAA-CTAAATTCAGTATGTATTTGAG-GAAGTAGTTTCTAAAGGAG-CTCTTCTTTAAATTAATAATACTGATGTTGGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618189 90 - 16319837 AGCTGGCAGCCTTTGAA-CTAAATTCAGTATGTATTTGAG-GAAGTAGTTTCTAAAGGAG-CTCTTCTTTAAATTAATAATACTGATGTTGGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240647 90 + 20526591 AGCTGGCAGCCTTTGAA-CTAAATTCAGTATGTATTTGAG-GAAGTAGTTTCTAAAGGAG-CTCTTCTTTAAATTAATAATACTGATGTTGGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213283 90 + 128539186 AGCCGGCAGCCTGTGAA-CTAAAATCAGTATGTATTTGAG-GAAGTAGTTTCTAAAGGAG-CTCTTCTTTAAATTAATAATACTGATGTTGGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533701 90 + 6255621 AGCTGGCGGCCTTTGAA-CTAAATTCAGTATGTATTTGAG-GAAGTAGTTTCTAAAGGAG-CTCTTCTTTAAATTAATAATACTGATGTTGGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589229 90 - 8658521 AGCCGGCAGCCTTTGAA-CTAAATTCAGTATGTATTTGAG-GAAGTAGTTTCTAACGGAG-CTCTTCTTTAAATTAATAATACTGATGTTGGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114792927 89 + 124281992 AGCAGGCAGGCTTTGAA-CTAAATTCAGCATGTGTTTGAG-GATGTTCTTTCCAAAGGAG-CTCTTCTTTAGA-TAATAATACTGTTGTTGGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437287 89 - 9212255 AGCAGGCAGGCTTTGAA-CTAAATTCAGCATGTGTTTGAG-GAAGTTGTTTCCAAAGGAG-CTCTTCTTTAGA-TCATAATACTGTTGTTGAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2852400 89 + 4466143 AGCAGGCAGGCTTTGGA-CTTAATTCAGCATGTGTTTGAG-GAAGCTGTTTCCAAAGGAG-CTCTTCTTTAGA-TAATAATACTGTTGTTGAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1560746 89 + 5364348 AGCAGGCAGGCTTTGAA-CTAAATGCAGCATGTGTTTGAG-GAAGTTGTTTCCAAAGGAG-CTCTTCTTTAGA-TAATAATACTGTTGCCGGC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9454634 89 - 31815103 ggcaggcagCCTTTGCA-CTGTGTTCAGCATGAGTTTGAG-TAGGTGGCTTCCAAATGAG-CTCTCCTTGAGA-GAATAATCCTGTTCTTGAC i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6703955 89 - 9870158 AGCAGGCAGCCTTTGCA-CTACGTTCAGCATGGGTTTGAG-TAGGTGGCTTCCAGATGAG-CTCTACTTTAGA-GAATAATCCTGTTCTTGGC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4286073 90 + 7922563 agcaggcagcCTCTGAGCCTATATTCAGGATGAGTTTGAG-TAAGTGTTTCCCACATGAG-CTCTACTTTAAA-TGATATTACTGTCCTTGAC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33142733 90 - 38964690 AGCAGACAGCCTCCAAA-CTCTTTACAGCATGGGTTTGAG-TAAGTGATTTCCCAATGAGCCTATAGCTTAGA-TGATAATATTGTTCTCAGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819768 83 - 1116856 -------AGTCTCTGAA-CTATATTCAGCTCATGCTTGAGCAAAGTGGTTTCCAAATGAG-CTATACTTTAGA-TAATAATACTGTTGTCTGT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124799418 87 + 151834684 I a score=3218026.000000 s hg38.chr12_KI270834v1_alt 47531 231 + 119498 CCCGTGTAC--------ATGGGAGGCATCAGGAC-AGACCCTTCCCAAGAATTCCGCTGGACTCTTCAAGGAAGAGA-AACTTCAGC-TGCATTATGAGTATGTTTCT--------------GGGATCTGAGCCTGAG-------------------AAGTGCAAAGTTTT---CTTGGCATACTAGAA-------TTTAAATTTATATTATTTC-ATTGAACCA-----TTTTTTTCTGAAAGTCTAT-TTCCAGAAGGACTGTATGCAAAGCCAGA----GTCCGTCCGt--------ccat s panTro5.chr12 127333568 231 + 137163284 CCCGTGTAC--------ATGGGAGGCATCAGGGC-AGACCCTTCCCAAGAATTCCGCTGGACTCTTCAAGGAAGAGA-AACTTCAGC-TGCATTATGAGTATGTTTCT--------------GGGGTCTGAGCCTGAG-------------------AAGTACAAAGTTTT---CTTGGCATACTAGAA-------TTTAAATTTATATTATTTC-ATTGAACCA-----TTTTTTTCTGAAAGTCTAT-TTCCAGAAGGACTGTATGCAAAGCCAGA----GTCCGTCCGt--------ccat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684402 231 + 135337776 CCCGTGTAC--------ATGGGAGGCATCAGGGC-AGACCCTTCCCAAGAATTCCGCTGGACTCTTCAAGGAAGAGA-AACTTCAGC-TGCATTATGAGTATGTTTCT--------------GGGGTCTGAGCCTGAG-------------------AAGTACAAAGTTTT---CTTGGCATACTAGAA-------TTTAAATTTATATTATTTC-ATTGAACCA-----TTTTTTTCTGAAAGTCTAT-TTCCAGAAGGACTGTATGCAAAGCCAGA----GTCCGTCCGt--------ccat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8197778 230 - 8369578 CCCGTGTAC--------ATGGGAGGCATCAGGGC-AGACCCTTCCCAAGAATTCCGCTGGACTCTTCAAGGAAGAGA-AACTTCAGC-TGCATTATGAGTATGTTTCT--------------GGG-TCTGAGCCTGAG-------------------AAGTACAAAGTTTT---CTTAGCATACTAGAA-------TTTAAATTTATATTATTTC-ATTGAACCA-----TTTTTTTCTGAAAGTCTAT-TTCCAGAAGGACTGTATGCAAAGCCAGA----GTCCGtccat--------ccat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97845884 232 + 106955855 CCCGTGTAC--------ACTGGAGGCATCAGGGC-AGACCCTTCCCAAGAATTCCGCTGGACTTTTCAAGGAAGAGA-AACTTTAGC-TGCATTATGAGTATGTTTCT--------------GGGGTCTGAGCCTGAG-------------------AAGTACAAAGTTTT---CTTAGCATACTAGAA-------TTTAAATTTATATTATGTC-ATAGAACCA----TTTTTTTTCGGAAAGTCTAT-TTCCAGAAGGACTGTATGCAAAGCCAGA----atccatccat--------ccat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971003 234 + 133663169 TCCGTGTAC--------ATGGGAGGCATCAGGGC-AGATACTTCCCAAGAATTCCGCTGGACTTTTTGAGGAAGAGA-AACTTTGGC-TGCCTTATGAGTATGTTTCT--------------GGGGTCACAGCCTGAG-------------------AAGTACAAAGTTTT---CTTAGCATATTAGAA-------TTAAAATTTACATTATTTC-ATAGAACCA--TTTTTTTTTTCTGAAAGTCTAT-TTCCAGAAGGACAGTATGCAAAGCCAGA----atccatccat--------ccat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218379 237 + 137757926 TCCGTGTAC--------ATGGGAGGCATCAGGGC-AGATACTTCCCAAGAATTCCGCTGGACTTTTTGAGGAAGAGA-AACTTTGGC-TGCCTTATGAGTATGTTTCT--------------GGGGTCACAGCCTGAG-------------------AAGTACAAAGTTTT---CTTAGCATATTAGAA-------TTAAAATTTACATTATTTC-ATAGAACCA---TTTTTTTTTCTGAAAGTCTAT-TTCCAGAAGGACAGTATGCAAAGCCAGAatccatccatccat--------ccat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618279 237 - 16319837 TCCGTGTAC--------ATGGGAGGCATCAGGGC-AGATACTTCCCAAGAATTCCGCTGGACTTTTTGAGGAAGAGA-AACTTTGGC-TGCCTTATGAGTATGTTTCT--------------GGGGTCACAGCCTGAG-------------------AAGTACAAAGTTTT---CTTAGCATACTAGAA-------TTAAAATTTACATTATTTC-ATAGAACCA---TTTTTTTTTCTGAAAGTCTAT-TTCCAGAAGGACAGTATGCAAAGCCAGAatccatccatccat--------ccat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240737 235 + 20526591 TCCGTGTACATGGGAGGATGGGAGGCATCAGGGC-AGATACTTCCCAAGAATTCCACTGGACTTTTTGAGGAAGAAA-AACTTTGGC-TGCCTTATGAGTATGTTTCT--------------GGGGTCAGAGCCTGAG-------------------AAGTACAAAGTTTT---CTTAGCATACTAGAATTAAAATTTAAAATTTACATTATTTC-ATAGAACCA--TTTTTTTTTTCTGAAAGTCTAT-TTCCAGAAGGACTGTATGCAAAGCCAGA-------------------------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213373 233 + 128539186 CCCGTGTAC--------ACGGGAGGCATCAGGGC-AGATGCTTCCCAAGAATTCCGCTGGACTTTTCGAGGAAGAAA-AACTTTGGC-TGCCTTATGAGTATGTTTCT--------------GGGGTCAGAGCCTGAG-------------------AAGCACAAAGTTTT---CTTAGCATACTAGAA-------TTAAAATTTACATTATTTC-ATAGAACCA---TTTTTTTTCCTGAAAGTCTAT-TTCCAGAAGGACTGTATGCAAAGCCAGA----ATCAatccat--------ccat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 533791 233 + 6255621 TCCTTGTAC--------ATGGGAGGCATCAGGGC-AGATACTTCCCAAGAATTCCGCTGGACTTTTTGAGGAAGAAA-AACTTTGGC-TGCCTTATGAGTATGTTTCT--------------GGGGTCAGAGCCTGAG-------------------AAGTACAAAGTTTT---CTTAGCATACTAGAA-------TTAAAATTTACATTATTTC-ATAGAACCA---TTTTTTTTTCTGAAAGTCTAT-TTCCAGAAGGACTGTATGCAAAGCCAGA----atccatccat--------ccat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589319 236 - 8658521 CCCGTGTAC--------ACGGGAGGCATCAGGGC-AGATACTTCCCAAGAATTCTGCTGGACTTTTCAAGGAAGAAA-AACTTTGGC-TGCCTTATGAGTATGTTTCT--------------GGGGACAGAGCCTGAG-------------------AAGTACAAAGTTTT---CTTAGCATACTAGAA-------TTAAAATTTACATTATTTC-ATAGAACCA----TTTTTTTCCTGAAAGTCTAT-TTCCAGAAGGACTGTATGCAAAGCCAGAatccatccattcat--------ccat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793016 231 + 124281992 CCCAGGTAC--------ATGGGGGACATCCGGGC-AGAACCTTCCCAAGAATTCCTCTGGAGTTTTCAAGGAAGAGA-AACTTTAGC-TGCATGATGAGTGTGTTTCT--------------GGGGTCAGAGCCTGAG-------------------AAGTACAAAGTTTT---CTTAGCATATTGGAA-------TTGAAATTTATATTGTTTC-ACAGAATAA-AACATTTTTTCCTGAAAGTCTAT-TTCCAGAAGGACTGTATGCAAAGCCAGG----Ctccacccac------------ i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437376 254 - 9212255 CTCATGAAC--------ATGGGAGGCATCGGGGC-GGAACCTTCCCAAGAATTCTTCTGGAGTTTTCAAGGAAGAGA-AACTTTAGC-TGCGTGATGAGTGTGTTTTTCGCTCATCATCTCAGGGGTCAGATCCTGAG-------------------AAGTACAAAGTTTT---CCTAGCATGTTGGAA-------TTGGAATTTATGTTATTTC-ACAGAACCG----TTTTTTCCCTGAAAGTCTAT-TTCCAGAAGGACTGTATGCAAAGCCAGG----atccacccacccatccatccac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2852489 227 + 4466143 CCCATGTAC--------ATGGGAGGCATCCGGGC-AG-ACCTTCCCAAGAATTCCTCTGGCGTTTTCAAGGAAGAGA-AACTTGAGC-TGTGTGATGAGTGTGTTTCT--------------GGGGTCAGAGCCTGAG-------------------AAGTACAAAGTTTT---TTTAGCATATTGGAA-------TTGGAATTTATATTATTTC-ACAGAACCA----TTTTTTTCCTTAAAGTCTAT-TTCCAGAAGGACTGTATGCAAAGCCAGG----atccacccat------------ i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1560835 232 + 5364348 CCCATGTGC--------ATGGGAGGCATCTGGGC-AGAACCTTCCCAAGAATTCCTCCGGAGTTTTCAAGGAAGAGA-AACTTTAGC-TGCATAATGAGTGTGTTTCT--------------GGGGTCAGAGCCTGAG-------------------AAGTACAAGGTTTT---CTTAGCATTTTGGAA-------TTGGAATTTATATTATTTC-ACAGAACCA----TTTTTTTCCTGAAAGTCTAT-TTCCAGAAGGACTGTATGCAACGACAGG----atccacccat--------ccat i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9454723 235 - 31815103 CCCGTATAC--------ATGGGAAGCATCAGGCC-AGACACTTCCCAAGAATTCCTCTGGATTTACCAAGGAAGGAA-AATTTTAAC-TGTGTGGTGAATGTGTTTCT--------------GGGGCCAGAGCCTGAG-------------------AAGTACAAAGTTTTGCATCTCGCATACTGGAA-------TTTAAATTTATATCATTTC-ACAGAACCA-----TTTTTTCCTGAAAGTCTATCTTCCATAAGGACTGTGTGCAAGGCCAGG----ACccatccat--------ccac i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6704044 235 - 9870158 CTCATATAC--------ATTGGAAGCATCAGGGC-AGACACTTCCCAAGAATTCCTCTGGATTTACCAAGGAAGGAA-AATTTTAGC-TGTATGGTGAGTGTGTTTCT--------------GGGGCCAGAGCCTGAG-------------------AAGCACAAAGTTTTGCACTTAGCATACTGGAA-------TTTAAATTTATATCACTTC-ACAGAACCA-----TTTTTCCCTGAAAGTCTATCTTCCAGAAGGACTGTGTGCAAAGCCAGG----atccatccat--------ccat i proCoq1.NW_012154285v1 C 0 I 515 s otoGar3.GL873618 4286163 253 + 7922563 CCCAGATAC--------ATGGAAAGCAACAGGGC-AGACACTTCCCAAGAATTTCTCTGGGTTTGTTGAGGAAGGAA-AACTCTAGC-TGTAAGATGGGTGTGTTTCT--------------GGGGCCAGAGCCTTTGTTTCTCAGGCACTGGCCCCAGAAACAAAATTTTGCACTTAGCATACTAGAA-------TTTAAATTTATATCATTTC-ATGGAACCA-----TTTTT-ACTGAAAATCTATCTTCCAGAAGAACTATATGTAAAGCCAGG----attcgtccat--------acgt i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124799505 189 + 151834684 CCCGTGTGC------------GAGGCAGAACGGC-AGGCACCTCCCATG----------------------------------------GCACCCCGAGTTCCACACT--------------GTGTCTGGGGCCTGAC-------------------AGGTCGAGAGTTTT---CTCAGCATCCTGGGA-------CTAAGATTTGTATCGTGTC-ACAGAACCT-----TTCTCCTCTGAAAATTTGTCTTCTGGAAGAACTCTGCAC-ACGACAGG----ATCTGTGCAT--------CTGT i mm10.chr5 I 87 I 7 s canFam3.chr26 33142823 234 - 38964690 CCCATATAC--------ATGGGAAGCATAGGGTCTAGACACTTCTCCGGGGTTCCTCTGGAATTACCAATGAAGGGA-AACTTTAGCATGCATGCGGAGTGTGTTTCT--------------GGGGCTAGAGCCTGAG-------------------AGGTGTGAAGTTTT---CTTTG--TACTGAAA-------TGTAAATTTATGTAATTCCTGCAGAACCATGTTTTTTTCCTCTGAAAACCTATCTTCCAAATAGAC----TGCAAAGCCAGG----atccacccat--------ccat i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 819851 230 - 1116856 CCCCTGTAC--------CTAGAAAGCATAAGGGC-AGATACTTC-CAAGAAGTCCTCTGGATTCGCCAAGGAAAGGAGAACTTCAGTGTGTATAGTGAGGGTGTTTCT--------------GGGGCCAGACCCTGAG-------------------AGGTGCAAAGTTTT---CTTAGTACACTGGAA-------TTTAAATTTATATCATTTC-----TGCCT----TTTTTTTTCTGGCAGTTTATCTTTTAGGTGGACTGTATGCAAATCCAGG----ATATGtccat--------ccat i dasNov3.JH568189 C 0 C 0 a score=76772.000000 s hg38.chr12_KI270834v1_alt 47762 6 + 119498 ccatcc s panTro5.chr12 127333799 6 + 137163284 ccatcc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684633 6 + 135337776 ccatcc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198008 6 - 8369578 ccatcc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846116 6 + 106955855 ccatcc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971237 6 + 133663169 ccatcc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218616 6 + 137757926 ccatcc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618516 6 - 16319837 ccatcc i macNem1.NW_012010578v1 C 0 C 0 s chlSab2.chr11 119213606 6 + 128539186 ccatcc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534024 6 + 6255621 ccatcc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589555 6 - 8658521 ccatcc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793247 2 + 124281992 ----cc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437630 6 - 9212255 ccatcc i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1561067 6 + 5364348 ccatcc i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9454958 6 - 31815103 ccatcc i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4286416 6 + 7922563 ccatcc i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124799701 6 + 151834684 ctgtcc i mm10.chr5 I 7 C 0 s canFam3.chr26 33143057 6 - 38964690 ccgtgc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 820081 6 - 1116856 ctgtcc i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e cebCap1.NW_016107484v1 2852716 0 + 4466143 C e cerAty1.NW_012001186v1 12240972 0 + 20526591 C a score=28926.000000 s hg38.chr12_KI270834v1_alt 47768 2 + 119498 at s panTro5.chr12 127333805 2 + 137163284 at i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684639 2 + 135337776 at i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198014 2 - 8369578 at i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123971243 2 + 133663169 at i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218622 2 + 137757926 at i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618522 2 - 16319837 at i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240972 2 + 20526591 at i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213612 2 + 128539186 at i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534030 2 + 6255621 at i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589561 2 - 8658521 at i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793249 2 + 124281992 ac i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437636 2 - 9212255 at i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1561073 2 + 5364348 at i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9454964 2 - 31815103 at i micMur3.chr21 C 0 I 636 s otoGar3.GL873618 4286422 2 + 7922563 at i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124799707 2 + 151834684 at i mm10.chr5 C 0 C 0 s canFam3.chr26 33143063 2 - 38964690 at i canFam3.chr26 C 0 I 4 s dasNov3.JH568189 820087 2 - 1116856 at i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e cebCap1.NW_016107484v1 2852716 0 + 4466143 C e nomLeu3.chr10 97846122 0 + 106955855 C a score=324698.000000 s hg38.chr12_KI270834v1_alt 47770 31 + 119498 ccatcca---tccatcca-------tccatccatccatcca s panTro5.chr12 127333807 31 + 137163284 ccatcca---tccatcca-------tccatccatccatcca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684641 31 + 135337776 ccatcca---tccatcca-------tccatccatccatcca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198016 31 - 8369578 ccatcca---tccatcca-------tccatccatccatcca i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123971245 31 + 133663169 ccatcca---tccatcca-------tccatccatccatcca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218624 31 + 137757926 ccatcca---tccatcca-------tccatccatccatcca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618524 31 - 16319837 ccatcca---tccatcca-------tccatccatccatcca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12240974 31 + 20526591 ccatcca---tccatcca-------tccatccatccatcca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213614 31 + 128539186 ccatcca---tccatcca-------tccatccatccatcca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534032 31 + 6255621 ccatcca---tccatcca-------tccatccatccatcca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589563 31 - 8658521 ccatcca---tccatcca-------tccatccatccatcca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793251 31 + 124281992 ccaccaa---tctatcca-------tccatccatccatcca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437638 31 - 9212255 ccatcca---tccgtcca-------tccatccatccatccg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2852716 23 + 4466143 -----------ccatcca-------tccatccatccatcca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1561075 31 + 5364348 ccatcca---tccatcca-------tccatccatccatcca i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4286424 38 + 7922563 ccattca---tccatATACAGGGTGTCCATAAAGTTTGAGA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124799709 34 + 151834684 ctgtccattgttcatcca-------tgtatctagttatcta i mm10.chr5 C 0 C 0 s canFam3.chr26 33143069 31 - 38964690 gcatcca---tctgtcta-------tctaaccattcatccC i canFam3.chr26 I 4 C 0 s dasNov3.JH568189 820089 18 - 1116856 ------------catcca-------tccatccatcca---- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e nomLeu3.chr10 97846122 0 + 106955855 C a score=560066.000000 s hg38.chr12_KI270834v1_alt 47801 83 + 119498 tATGTTCATT---------------CATCTATCAGTCTGTTCTTCCATTC-------------------------------------ATCCATCCATGTGTCTGTTTTTTTCATCCACCCATCTGC-----TATTTACCT s panTro5.chr12 127333838 83 + 137163284 tATGTTCATT---------------CATCTATCAGTCTGTTCTTCCATTC-------------------------------------ATCCATCCATGTGTCTGTTTTTTTCATCCACCCATCTGC-----TATTTACCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684672 83 + 135337776 tATGTTCATT---------------CATCTATCAGTCTGTTCTTCCATTC-------------------------------------ATCCATCCATGTGTCTGTTTTTTTCATCCACCCATCTGC-----TATTTACCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198047 79 - 8369578 tATGTTCATT---------------CATCTATCAGTCTGTTCTTCCATTC-------------------------------------ATCCATCCATGTGTC----TTTTTCATCCACCCATCTGC-----TGTTTACCT i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123971276 82 + 133663169 tATGTTCATT---------------Catctatcagtctattcttcccttc-------------------------------------atccatccatgtgtctgt-tttttcatccacctatctgt-----tatttacct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218655 82 + 137757926 tATGTTCATT---------------Catctatcagtctattcttcccttc-------------------------------------atccatccatgtgtctgt-tttttcatccacctatctgt-----tatttacct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618555 82 - 16319837 tatgttcatt---------------catctatcagtctattcttcccttc-------------------------------------atccatccatgtgtctgt-tttttcatccacctatctgt-----tatttacct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241005 82 + 20526591 tATGTTCATT---------------Catctatcagtctgttcttcccttc-------------------------------------atccatccatgtgtctgt-tttttcatccacctatctgt-----tatttacct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213645 82 + 128539186 tATGTTCTTT---------------CTTCTATCAGTCTATTCTTCCCTTT-------------------------------------ATCCATCCATGTGTCTGT-TTTTTCATCCACCTATCTGT-----TATTTACCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534063 82 + 6255621 tATGTTCATT---------------Catctatcagtctattcttcccttc-------------------------------------atccatccatgtgtctgt-tttttcatccacctatctgt-----tatttacct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589594 82 - 8658521 tatggtcatt---------------catctatcagtctattcttcccttc-------------------------------------atccatccatgtgtctgt-tttttcgtccacctatctgt-----tatttacct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793282 63 + 124281992 tatgttcatt---------------catctgtcagtctgttcttctactt-------------------------------------atccatccatgtgtctgt-tttttcatcc------------------------ i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437669 78 - 9212255 tatgttcatt---------------catctgtcaatctattcttctactt-------------------------------------atccatctgtgcgtctgt-tttttcatccacccatctgt-----tattt---- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2852739 78 + 4466143 tATGTTCATT---------------Catctgtcagtctatttttctactt-------------------------------------atccatccatgtgtctgt-ttttttatccacccatctgt-----tattt---- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1561106 75 + 5364348 tATGTTCATT---------------CATCTGTCAGTC---TCTTCTACTT-------------------------------------ATCCATCCATGTGTCTGC-TTTTTcatccatccgttatt-----tatct---- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4286462 67 + 7922563 TACCCATATT---------------CATTTATCTGTCTATTCT---GTTT-------------------------------------ATCCATCTACCGCTCTGT-TTTCTC-tccactcactc---------------- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124799743 139 + 151834684 tgtacctactgttttatttacccaccatttatctgcttatttttccatccatataATAAGGGATCTGTAGACAACAattcatccactatccatccacttatccat-ctctccatccatccattcatccacccatctaccc i mm10.chr5 C 0 C 0 s canFam3.chr26 33143100 3 - 38964690 TGT----------------------------------------------------------------------------------------------------------------------------------------- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e dasNov3.JH568189 820107 0 - 1116856 C e nomLeu3.chr10 97846122 0 + 106955855 C a score=1341562.000000 s hg38.chr12_KI270834v1_alt 47884 137 + 119498 ACCTATCTGTTCACCCATCCAACCATCCATCTGTCCATTCATT----CATAGATTTGTT---CATCTATCCATCTATTCTTC---------TTTTTGCCC-ATCTGTCTGTTTTTCCATCTACCTGTCCATTTATCCATCTACCCGTCCATTTA s panTro5.chr12 127333921 137 + 137163284 ACCTATCTGTTCACCCATCCAACCATCCATCTGTCCATTCATT----CATAGATTTATT---CCTCTATCCATCTATTCTTC---------TGTTTGCCC-ATCTGTCTGTTTTTCCATCTACCTGTCCATTTATCCATCTACCCGTCCATTTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684755 137 + 135337776 ACCTATCTGTTCACCCATCCAACCATCCATCTGTCCATTCATT----CATAGATTTATT---CATCTATCCATCTATTCTTC---------TGTTTGCCC-ATCTGTCTGTTTTTCCATCTACCTGTCCATTTATCCATCTACCCGTCCATTTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198126 137 - 8369578 ACCTATCTGTTCATCCATCCAACCATCCATCTGTCCATTCATT----CATAGATTTATT---CATCTATCCATCTATTCTTC---------TGTTTGCCC-ATCTGTCTGTTTTTCCATCTACCTGTCCATTTATCCATCTACCCGTCCATTTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846122 117 + 106955855 gtccgtccgtctgtccatccatccatccatcTGTCCATTCATT----CATAGATTTATT---CATCTATCCGTCTATTCTTC---------TGTTTGCCC-ATCTGTCTGTTTTTCCATCTACCT--------------------GTCCACTTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971358 136 + 133663169 acctatctgttcatccatccaaccatccatctgtccattcact----catatatttatt---aatctatccatctattcttc---------tctttgctt-gtctgtctgtttttcc-tctagctgtccatttatccatctaCCCGTCTGTTCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218737 136 + 137757926 acctatctgttcatccatccaaccatccatctgtccattcact----catatatttatt---aatctatccatctattcttc---------tctttgctt-gtctgtctgtttttcc-tctagctgtccatttatccatctaCCCGTCTGTTCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618637 136 - 16319837 acctatctgttcatccatccaaccatccatctgtccattcact----catatatttatt---aatctatccatctatTCTTC---------TCTTTGCTT-GTCTGTCTGTTTTTCC-TCTAGCTGTCCATTTATCCATCTACCCGTCTGTTCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241087 137 + 20526591 acctatctgttcatccatccaaccatccatctctccattcact----catatatttatt---aatctatccatctattcttc---------tctttgctt-gtctgtctgtttttccatctagctgtccatttatccatctaCCCGTCTGTTCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213727 137 + 128539186 ACCTATCTGTTcatccatccaaccatccatctgtccattcact----catatatttatt---aatctatccatcTACTCTTC---------TCTTTGCTT-ATCTGTCTGTTTTTCCATCTAGCTGTCCATTTATCCATCTACCCGTCTGTTCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534145 137 + 6255621 acctatctgttcatccatccaaccatccatctgtccatccact----catatatttatt---aatctatccatctattcttc---------tctttgctt-gtctgtctgtttttccatctagctgtccatttgtccatctaCCCGTCTGTTCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589676 137 - 8658521 acctatctgttcatccatccaaccatccatctgtccattccct----cgtatatttatt---catctatccatctatTCTTC---------TCTTTGCCC-GTCTGTCTGTTTTTCCATCTAGCTGTCCATTTATCCATCTGCCCGTCTGTTCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793345 138 + 124281992 acccgtctgttcatccatccaaccatctatctgtccattcatt----catatatttatc---catctacccatctatTCTTC---------TGTTTACCCAATCTGTGTGTTTTTCCATATGCCTGTCCATTTATCCATCTACTCATCTGTTca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437747 130 - 9212255 acccatctgttcatccatccaaccaCctgtctg----ttcatt----catgtatttatt---catctacccatctgttcttc---------tgtttacccaatc----tatttttccatctgcctttccatttatccatctacccatctgttca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2852817 135 + 4466143 acccatctgttcatccatcaaaccatatatctctctgttcatt----catatatttatt---catctacccatcta---ttc---------tgtttacccaatctgtctgtttttccatctgcctttgtatttatccatctagccgtctgttca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1561181 138 + 5364348 atccatctgttcatctatccaaccatctatctgtccgttcatt----catatatttatt---catctacccatctattcttc---------tgtttacccaatctgtctgttttcccatctgcctgtccatttatccatctacccatctgttca i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4286529 125 + 7922563 acccatctgtttatccagctgcctatccctctattcatccttc----catg---------------tatccatctatccatt---------ctttcactt-gtctgtctgtccatccatccatccattcacttatccttcagtccatttgtcta i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124799882 153 + 151834684 acctactcacccatccacctacccatctatttgtccatccaATTACACATATTTTTACTTGCCATCCATCCATCCACCCTCCCTGCCCACTCTTCTATCC-ATCTTCCTACTCACccattcatctatcaatctatccatctacccatctatcca i mm10.chr5 C 0 C 0 s canFam3.chr26 33143103 93 - 38964690 ----------------ATCCACACACTCACTTATGcatccatt----tatgcatctgtt---catccattcatgtatatatc---------tatccatgc-----------------------------atgcacccacacatccttctatcca i canFam3.chr26 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e dasNov3.JH568189 820107 0 - 1116856 C a score=225450.000000 s hg38.chr12_KI270834v1_alt 48021 28 + 119498 TCCATCTACCC--------------------------------------ATCTGTTCATTCACCTG s panTro5.chr12 127334058 28 + 137163284 TCCATCTACCC--------------------------------------ATCTGTTCATTCACCTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684892 28 + 135337776 TCCATCTACCC--------------------------------------ATCTGTTCATTCACCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198263 28 - 8369578 TCCATCTACCC--------------------------------------ATCTGTTCATTCACCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846239 28 + 106955855 TCCATCTACCC--------------------------------------ATCTGTTCATTCACCTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971494 66 + 133663169 TTCACCTGtccatccatccatccatccatccatccatccatccatccatatccatccatccatcca i rheMac8.chr11 C 0 I 14 s macFas5.chr11 128218873 28 + 137757926 TTCACCTGtcc--------------------------------------atccatccatccatcca i macFas5.chr11 C 0 I 56 s macNem1.NW_012010578v1 10618773 28 - 16319837 TTCACCTGtcc--------------------------------------atccatccatccatcca i macNem1.NW_012010578v1 C 0 I 106 s cerAty1.NW_012001186v1 12241224 24 + 20526591 TTCACCTGtcc--------------------------------------atccatccatcca---- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213864 28 + 128539186 TTCACCTGTCC--------------------------------------Ctccatccatccatcca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534282 28 + 6255621 TTCACCTGtcc--------------------------------------atccatccatccatcca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589813 28 - 8658521 TTCACCTGtcc--------------------------------------atccatccatccatcca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793483 28 + 124281992 ttcacctgtcc--------------------------------------atccatccagccatcca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437877 28 - 9212255 ttcacctgtcc--------------------------------------atccatccatccatcca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2852952 28 + 4466143 ttcacctgttc--------------------------------------atccatccatccatcca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1561319 28 + 5364348 ttcacctgtcc--------------------------------------atccatccatccatcca i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4286654 21 + 7922563 ttcattgattt---------------------------------------------catccatctg i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124800035 28 + 151834684 tctgtccatct--------------------------------------acctactcattcattcc i mm10.chr5 C 0 C 0 s canFam3.chr26 33143196 20 - 38964690 tccatctttcc--------------------------------------atgtgtctt-------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 820107 28 - 1116856 tccatctatcc--------------------------------------TTGTGTTAATTAACCTA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I a score=148232.000000 s hg38.chr12_KI270834v1_alt 48049 11 + 119498 tcc--atccatct s panTro5.chr12 127334086 11 + 137163284 tcc--atccatct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684920 11 + 135337776 tcc--atccatct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198291 11 - 8369578 tcc--atccatct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846267 11 + 106955855 TCC--ATTCACCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971574 11 + 133663169 tcc--atccatcc i rheMac8.chr11 I 14 C 0 s macFas5.chr11 128218957 11 + 137757926 tcc--atccatcc i macFas5.chr11 I 56 C 0 s macNem1.NW_012010578v1 10618907 11 - 16319837 tcc--atccatcc i macNem1.NW_012010578v1 I 106 C 0 s cerAty1.NW_012001186v1 12241248 11 + 20526591 tcc--atccatcc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213892 13 + 128539186 tccatatccatcc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534310 11 + 6255621 tcc--atccatcc i manLeu1.NW_012103587v1 C 0 I 175 s colAng1.NW_012116043v1 4589841 11 - 8658521 tcc--atccatcc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793511 11 + 124281992 tcc--atccagcc i calJac3.chr9 C 0 I 2 s saiBol1.JH378194 437905 11 - 9212255 tcc--atccattc i saiBol1.JH378194 C 0 I 42 s cebCap1.NW_016107484v1 2852980 11 + 4466143 tcc--atccatcc i cebCap1.NW_016107484v1 C 0 I 42 s aotNan1.NW_018491581v1 1561347 11 + 5364348 tcc--ttccatcc i aotNan1.NW_018491581v1 C 0 I 2 s otoGar3.GL873618 4286675 11 + 7922563 tct--atccattt i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124800063 11 + 151834684 tct--atccatca i mm10.chr5 C 0 C 0 s canFam3.chr26 33143216 11 - 38964690 tcc--atccatcc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 820135 11 - 1116856 TAC--ATCCATTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I a score=14655.000000 s hg38.chr12_KI270834v1_alt 48060 2 + 119498 ac s panTro5.chr12 127334097 2 + 137163284 ac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684931 2 + 135337776 ac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198302 2 - 8369578 ac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846278 2 + 106955855 AC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971585 2 + 133663169 at i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218968 2 + 137757926 at i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618918 2 - 16319837 at i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241259 2 + 20526591 at i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119213905 2 + 128539186 at i chlSab2.chr11 C 0 I 150 s manLeu1.NW_012103587v1 534496 2 + 6255621 at i manLeu1.NW_012103587v1 I 175 C 0 s colAng1.NW_012116043v1 4589852 2 - 8658521 at i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4286686 2 + 7922563 ac i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124800074 2 + 151834684 at i mm10.chr5 C 0 C 0 s canFam3.chr26 33143227 2 - 38964690 at i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 820146 2 - 1116856 AT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e aotNan1.NW_018491581v1 1561358 2 + 5364348 I e cebCap1.NW_016107484v1 2852991 42 + 4466143 I e saiBol1.JH378194 437916 42 - 9212255 I e calJac3.chr9 114793522 2 + 124281992 I a score=101249.000000 s hg38.chr12_KI270834v1_alt 48062 7 + 119498 ccatcca s panTro5.chr12 127334099 7 + 137163284 ccatcca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684933 7 + 135337776 caatcca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198304 7 - 8369578 ccatcca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846280 7 + 106955855 ccatcca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971587 7 + 133663169 ccatcca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218970 7 + 137757926 ccatcca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618920 7 - 16319837 ccatcca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241261 7 + 20526591 ccatcca i cerAty1.NW_012001186v1 C 0 I 159 s chlSab2.chr11 119214057 7 + 128539186 ccatcca i chlSab2.chr11 I 150 C 0 s manLeu1.NW_012103587v1 534498 7 + 6255621 ccatcca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589854 7 - 8658521 ccatcca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793524 7 + 124281992 ccagcca i calJac3.chr9 I 2 C 0 s saiBol1.JH378194 437958 7 - 9212255 ccgtcca i saiBol1.JH378194 I 42 C 0 s cebCap1.NW_016107484v1 2853033 7 + 4466143 ccatcca i cebCap1.NW_016107484v1 I 42 C 0 s aotNan1.NW_018491581v1 1561360 7 + 5364348 ccatcca i aotNan1.NW_018491581v1 I 2 C 0 s otoGar3.GL873618 4286688 7 + 7922563 ccatcca i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124800076 7 + 151834684 ccatcta i mm10.chr5 C 0 C 0 s canFam3.chr26 33143229 7 - 38964690 ccatcca i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 820148 7 - 1116856 TTGCTTA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I a score=8295.000000 s hg38.chr12_KI270834v1_alt 48069 1 + 119498 c s panTro5.chr12 127334106 1 + 137163284 c i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684940 1 + 135337776 c i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198311 1 - 8369578 t i gorGor5.CYUI01015152v1 C 0 I 16 s nomLeu3.chr10 97846287 1 + 106955855 t i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971594 1 + 133663169 t i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218977 1 + 137757926 t i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618927 1 - 16319837 t i macNem1.NW_012010578v1 C 0 C 0 s chlSab2.chr11 119214064 1 + 128539186 t i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534505 1 + 6255621 t i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589861 1 - 8658521 t i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793531 1 + 124281992 t i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437965 1 - 9212255 t i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2853040 1 + 4466143 t i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1561367 1 + 5364348 t i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4286695 1 + 7922563 t i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124800083 1 + 151834684 c i mm10.chr5 C 0 C 0 s canFam3.chr26 33143236 1 - 38964690 t i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 820155 1 - 1116856 T i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e cerAty1.NW_012001186v1 12241268 159 + 20526591 I a score=9661.000000 s hg38.chr12_KI270834v1_alt 48070 1 + 119498 c s gorGor5.CYUI01015152v1 8198328 1 - 8369578 c i gorGor5.CYUI01015152v1 I 16 C 0 s rheMac8.chr11 123971595 1 + 133663169 c i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218978 1 + 137757926 c i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618928 1 - 16319837 c i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241427 1 + 20526591 c i cerAty1.NW_012001186v1 I 159 C 0 s chlSab2.chr11 119214065 1 + 128539186 c i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534506 1 + 6255621 c i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4589862 1 - 8658521 c i colAng1.NW_012116043v1 C 0 I 137 s calJac3.chr9 114793532 1 + 124281992 c i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437966 1 - 9212255 c i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2853041 1 + 4466143 c i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1561368 1 + 5364348 c i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4286696 1 + 7922563 t i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124800084 1 + 151834684 c i mm10.chr5 C 0 C 0 s canFam3.chr26 33143237 1 - 38964690 c i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 820156 1 - 1116856 T i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e nomLeu3.chr10 97846288 0 + 106955855 C e panPan2.chr12 125684941 0 + 135337776 C e panTro5.chr12 127334107 0 + 137163284 C a score=200839.000000 s hg38.chr12_KI270834v1_alt 48071 24 + 119498 catccatccatccat------ccatccatc s panTro5.chr12 127334107 21 + 137163284 ---ccatccatccat------ccatccatc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684941 21 + 135337776 ---ccatccatccat------ccatccatc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198329 24 - 8369578 catccatccatccat------ccatccatc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846288 15 + 106955855 ---ccatccatccat------cca------ i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971596 30 + 133663169 catccatccatccatccccatccatccatc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128218979 26 + 137757926 catccatccatccatcc----ccatccatc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618929 24 - 16319837 catccatccgtccat------ctgtccatc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241428 24 + 20526591 catccatccatccat------ccatccatc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119214066 24 + 128539186 catccatccatccat------ccatccatc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534507 24 + 6255621 catccatccatccat------ccatccatc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4590000 24 - 8658521 catccatccatctat------ccatccatc i colAng1.NW_012116043v1 I 137 C 0 s calJac3.chr9 114793533 24 + 124281992 catccttccttccat------ccatctatt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437967 24 - 9212255 catccatctgtccat------ccgtctctc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2853042 24 + 4466143 catccatccgtccgt------ttgtctctc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1561369 4 + 5364348 catc-------------------------- i aotNan1.NW_018491581v1 C 0 I 245 s otoGar3.GL873618 4286697 24 + 7922563 tatctatccattcat------ctgtccatt i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124800085 20 + 151834684 ----catccatccat------ccacccaac i mm10.chr5 C 0 I 3 s canFam3.chr26 33143238 24 - 38964690 catccatccatccat------ccattcctc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 820157 17 - 1116856 ----CACCCATC---------TTATTTATG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I a score=288205.000000 s hg38.chr12_KI270834v1_alt 48095 31 + 119498 tacccatccatccat------cca------------tcca--------tccatccat s panTro5.chr12 127334128 31 + 137163284 tacccatctgtccat------cca------------tcca--------tccatccgt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684962 31 + 135337776 tacccatctgtccat------cca------------tcca--------tccatccgt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198353 31 - 8369578 tatccatctgtccat------cca------------tcca--------tccatccgt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846303 21 + 106955855 ----------tccat------cca------------tcca--------tccatcTGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971626 43 + 133663169 catccatccatccat------ccatctgtccatctgtcca--------tccatccgt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128219005 43 + 137757926 catccatccatccat------ccatctgtccatctgtcca--------tccatccgt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618953 31 - 16319837 tgtccatccatccat------cca------------tcca--------tccatccgt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241452 31 + 20526591 tatccatctgtccat------cca------------tcca--------tccatccat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119214090 31 + 128539186 tatccatccatccat------cta------------tcca--------tcTGTCCAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534531 31 + 6255621 catccatctatcaat------ctg------------tcca--------tccatccgt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4590024 31 - 8658521 tgtccatccatccat------cca------------tcta--------tccatcTGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793557 31 + 124281992 catccatccatccat------cct------------tcct--------tccatctat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 437991 31 - 9212255 catctgtccatccat------cct------------tcca--------tccatccat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2853066 39 + 4466143 catctgtccgtccat------cca------------tccatctgtttctccatctgt i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4286721 31 + 7922563 cacccatccatctgt------tca------------tctg--------tccacttat i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124800108 37 + 151834684 tacccacccatccatatctaccca------------ctct--------tctgtccat i mm10.chr5 I 3 C 0 s canFam3.chr26 33143262 31 - 38964690 tatccatccatccat------tcc------------tcta--------tccacacac i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 820174 31 - 1116856 TAAGcatccatccat------cca------------tcca--------tccatccac i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e aotNan1.NW_018491581v1 1561373 245 + 5364348 I a score=72751.000000 s hg38.chr12_KI270834v1_alt 48126 6 + 119498 ccatTC s panTro5.chr12 127334159 6 + 137163284 ccatTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684993 6 + 135337776 ccatTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198384 6 - 8369578 ccatTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846324 6 + 106955855 CCATTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971669 6 + 133663169 ccatTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128219048 6 + 137757926 ccatTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618984 6 - 16319837 ccatTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241483 6 + 20526591 ccaGTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119214121 6 + 128539186 CTATTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534562 6 + 6255621 ccatTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4590055 6 - 8658521 CCATTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793588 6 + 124281992 ccattc i calJac3.chr9 C 0 I 151 s saiBol1.JH378194 438022 6 - 9212255 ccatcc i saiBol1.JH378194 C 0 I 32 s cebCap1.NW_016107484v1 2853105 6 + 4466143 ccgtcc i cebCap1.NW_016107484v1 C 0 I 28 s aotNan1.NW_018491581v1 1561618 6 + 5364348 ccatTA i aotNan1.NW_018491581v1 I 245 C 0 s otoGar3.GL873618 4286752 6 + 7922563 tcattc i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124800145 6 + 151834684 ctactt i mm10.chr5 C 0 I 3 s canFam3.chr26 33143293 6 - 38964690 tcatcc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 820205 6 - 1116856 tcaatc i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I a score=38712.000000 s hg38.chr12_KI270834v1_alt 48132 3 + 119498 AAT s panTro5.chr12 127334165 3 + 137163284 AAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125684999 3 + 135337776 AAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198390 3 - 8369578 AAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846330 3 + 106955855 AAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971675 3 + 133663169 AAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128219054 3 + 137757926 AAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618990 3 - 16319837 AAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241489 3 + 20526591 AAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119214127 3 + 128539186 AAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534568 3 + 6255621 AAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4590061 3 - 8658521 AAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793745 3 + 124281992 AAT i calJac3.chr9 I 151 C 0 s saiBol1.JH378194 438060 3 - 9212255 AAT i saiBol1.JH378194 I 32 C 0 s cebCap1.NW_016107484v1 2853139 3 + 4466143 AAT i cebCap1.NW_016107484v1 I 28 C 0 s aotNan1.NW_018491581v1 1561624 3 + 5364348 AAT i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124800154 3 + 151834684 cat i mm10.chr5 I 3 C 0 s canFam3.chr26 33143299 3 - 38964690 GAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 820211 3 - 1116856 aac i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e otoGar3.GL873618 4286758 0 + 7922563 C a score=442690.000000 s hg38.chr12_KI270834v1_alt 48135 48 + 119498 GGATGGTCCAATCTGTCTGTC------ATTATCAATGTATGAATTAATTACCCA s panTro5.chr12 127334168 48 + 137163284 GGATGGCCCAATCTGTCTGTC------ATTATCAATGTATGAATTAATTACCCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125685002 48 + 135337776 GGATGGCCCAATCTGTCTGTC------ATTATCAATGTATGAATTAATTACCCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198393 48 - 8369578 GGATGGTCCAATCTGTCTGTC------ATTATCAATGTATGAATTAATTACCCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846333 48 + 106955855 GGATGGTCCAATCTGTCTGTC------ATTATCAATGTATGAATTAATTACCCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971678 48 + 133663169 GGATGGGCCCATCTGTCTGTC------ATTATCAGTATATGAATTAATTACCCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128219057 48 + 137757926 GGATGGGCCCATCTGTCTGTC------ATTATCAGTGTATGAATTAATTACCCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10618993 48 - 16319837 GGATGGGCCCATCTGTCTGTC------ATTATCAGTGTATGAATTAATTACCCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241492 48 + 20526591 GGATGGGCCCATCTGTCTGTC------ATTATCAGTGTATGAATTAATTACCCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119214130 48 + 128539186 GGATGGGCCAATCTGTCTGTC------ATTATCAGTGTATGAATTAATTACCCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534571 48 + 6255621 GGATGGGCCCATCTGTCTGTC------ATTATCAGTGTATGAATTAATTACTCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4590064 48 - 8658521 GGATGGGCCAATCTGTCTGTC------ATTATCAGTGTATGAATTAATTACCCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793748 45 + 124281992 AGATGGTCCAATCAGTCTGTC---------ATCGATGTATGAATTAATTACCCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 438063 48 - 9212255 AGATGGTCCAATCAGTCTGTC------ATTATCAGTCTATGAATTAATTACCCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2853142 44 + 4466143 AGATGGTCCAATCAGTCTGTC------ATTATCAATGTATG----AATTACCCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1561627 48 + 5364348 AGATGGTCCAATCAGTCTGTC------ATTATCAGTGTATGAATTAATTACCCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4286758 29 + 7922563 --acttgtccatctgcccatc-----------------------cattcaccca i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124800157 54 + 151834684 ctatccatccatcTGTTCATCTTCCTACTCACCAATTTatctatccatcatcta i mm10.chr5 C 0 I 213 s dasNov3.JH568189 820214 19 - 1116856 ----------------------------------atatatttattaagtgtcc- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e canFam3.chr26 33143302 0 - 38964690 C a score=1422794.000000 s hg38.chr12_KI270834v1_alt 48183 143 + 119498 ATGTCTTTG---CTTATGTTAAATGAAGAAA-GGACAAATGCTTG------------TCTTAAAGCTTGATGCTTTGTAAG------CCCCTGAGTTGAAACAGGTGAAACCAAGAGAAGCAGAAGTG--TCGATGTGTGGACAGGCATATCACACCCCCTGGGTGG s panTro5.chr12 127334216 143 + 137163284 ATGTCTTTG---CTTATGTTAAATGAAGAAA-GGACAAATGCTTG------------TCTTAAAGCTTGATGCTTTGTAAG------CCCCTGAGTTGAAATAGATGAAACCAAGAGAAGCAGAAGTG--TCGATGTGTGGACAGGCATATCACACCCCCTGGGTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125685050 143 + 135337776 ATGTCTTTG---CTTATGTTAAATGAAGAAA-GGACAAATGCTTG------------TCTTAAAGCTTGATGCTTTGTAAG------CCCCTGAGTTGAAACAGGTGAAACCAAGAGAAGCAGAAGTG--TCGATGTGTGGACAGGCATATCACACCCCCTGGGTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198441 143 - 8369578 ATGTCTTTG---CTTATGTTAAATGAAGAAA-GGACAAATGCTTG------------TCTTAAAGCTTGATGCTTTGTAAG------CCCCTGAGTTGAAACAGGTGAAACCAAGAGAAGCAGAAGTG--TCAATGTGTGGACAGGCATATCACACCCCTTGGGTGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846381 144 + 106955855 ATGTCTTTG---CTTATGTTAAATGAAGAAAGGGACAAATGCTTG------------TCTTAAAGCTTGATGCTTTGTAAG------CCCCTGAGTTGAAACAGGTGAAACCAAGAGAAGCAGAAGTG--TCGATGTGTGGACAGGCATATCACACCCCCTGGGTGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971726 142 + 133663169 ATGTCTTTG---CTTATGTTAAATGAAGAAAGGGACAAATGCTTG------------GCTTAAGGCTTGATGCTTTGTAAG------CCCCTGAGTTGAAACAGGTGAAACCAAGAGAAGCAGAAGTG--TCAATGTGTGGACAGGCATATCACACCCCC-GGGT-G i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128219105 142 + 137757926 ATGTCTTTG---CTTATGTTAAATGAAGAAAGGGACAAATGCTTG------------GCTTAAGGCTTGATGCTTTGTAAG------CCCCTGAGTTGAAACAGGTGAAACCAAGAGAAGCAGAAGTG--TCGATGTGTGGACAGGCATATCACACCCCC-GGGT-G i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10619041 143 - 16319837 ATGTCTTTG---CTTATGTTAAATGAAGAAAGGGACAAATGCTTG------------GCTTAAGGCTTGATGCTTTGTAAG------CCCCTGAGTTGAAACAGGTGAAACCAAGAGAAGCAGAAGTG--TCGATGTGTGGACAGGCATATCACACCCCC-GGGTGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241540 143 + 20526591 ATGTCTTTG---CTTATGTTAAATGAAGAAAGGGACAAATGCTTG------------GCTTAAGGCTTGATGCTTTGTAAG------CCCCTGAGTTGAAACAGGTGAAACCAAGAGAAGCAGAAGTG--TCGATATGTGGACAGGCATATCACACCCCC-GGGTGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119214178 143 + 128539186 ATGTCTTTG---CTTATGTTAAATGAAGAAAGGGACAAATGCTTG------------GCTTAAGGCTTGATGCTTTGTAAG------CCCCTGAGTTGAAACAGGTGAAACCAAGAGAAGCAGAAGTG--TCGATGTGTGGACAGGCATATCACACCCCC-GGGTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534619 143 + 6255621 ATGTCTTTG---CTTATGTTAAATGAAGAAAGGGACAAATGCTTG------------GCTTAAGGCTTGATGCTTTGTAAG------CCCCTGAGTTGAAACAGGTGAAACCAAGAGAAGCAGAAGTG--TCGATGTGTGGACAGGCATATCACACCCCC-GGGTGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4590112 143 - 8658521 ATGTCTTTG---CTTATGTTAAATGAAGAAAGGGACAAATGCTTG------------GCTTAAGGCTTGATGCTTTGTAAG------CTCCTGAGTTGAAACAGGTGAAACCAAGAGAAGCAGAAGTG--TCGATGTGTGGACAGGCATATCACACCCCC-GGGTGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793793 139 + 124281992 ATGTCTTTG---CTTATGTTAAATGAAGTAAGGGACGAATGTTTG------------GCTTAAGGCTCGATGCTTTGTAAG------TCCC-----TGAAACAGGTGAAAGCAAGAGAAGCAGAAGTG--TCAGTATGTGGACAGGCACATCACACCCCCTGGGTGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 438111 144 - 9212255 ATGTCTTTG---CTTATGTCAAATGAAGTAAGGGACACATGCTTG------------GCTTAAGGCTTGTCGCTTTGTAAG------CCCCTGAGTTGAAACAGGTGAAAGCAAGAGAAGCAGAAGTG--TCAGTATGTGGACAGGCGCATCACACCCCCTGGGCGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2853186 144 + 4466143 ATGTCTTTG---CTTATGTTAAAGGAAGTAAGGGACAAATGCTTG------------GCTTAAGGCTTGATGCTTTGTAAG------CCCCTGAGTTGAAACAGGTGAAAGCAAGAGAAGCAGAAGTG--TCAGTATGTGGACAGGCACATCACACCCCCTGGGTGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1561675 143 + 5364348 ATGTCTTTG---CTTATGTTAAATGAAGTAAGGGACAAATGCTTG------------GCTTAAGGCTTGATGCTTTGTAAG------CCCCTGAATTGAAACAGGTGAAAGCAAGAGAAACAGAAGTG--TCAGTATGTGGATGGGCACGTCACA-GCCCTGGGTGG i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 820233 151 - 1116856 ---cctttgggactggtattgtgcagtgata-agcaaaatatttgcagtccctgccctcatggagtttacagtttagcaagggagacactaaaaattaaaa----ttaaataCAgggaagcagatttggcccaatatatag---ggcctaccacat-----gggagg i dasNov3.JH568189 C 0 I 316 e micMur3.chr21 9454966 636 - 31815103 I e mm10.chr5 124800211 213 + 151834684 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e canFam3.chr26 33143302 0 - 38964690 C e otoGar3.GL873618 4286787 0 + 7922563 C a score=25236.000000 s hg38.chr12_KI270834v1_alt 48326 3 + 119498 CAC s panTro5.chr12 127334359 3 + 137163284 GGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125685193 3 + 135337776 GAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198584 3 - 8369578 TAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846525 3 + 106955855 GAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971868 3 + 133663169 GAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128219247 3 + 137757926 GAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10619184 3 - 16319837 GAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241683 3 + 20526591 GAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119214321 3 + 128539186 GAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534762 3 + 6255621 GAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4590255 3 - 8658521 GAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793932 3 + 124281992 GAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 438255 3 - 9212255 GAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2853330 3 + 4466143 GAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1561818 3 + 5364348 GGC i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e mm10.chr5 124800211 213 + 151834684 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e dasNov3.JH568189 820384 316 - 1116856 I e canFam3.chr26 33143302 0 - 38964690 C e otoGar3.GL873618 4286787 0 + 7922563 C a score=164540.000000 s hg38.chr12_KI270834v1_alt 48329 18 + 119498 TGCATTGTTGAATTCTtg s panTro5.chr12 127334362 18 + 137163284 TGCATTGTTGAATTCTtg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125685196 18 + 135337776 TGCATTGTTGAATTCTtg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198587 18 - 8369578 TGCATTGTTGAATTCTtg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846528 18 + 106955855 TGCATTGTTGAATTCTtg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971871 18 + 133663169 TGCActgttgacttcttg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128219250 18 + 137757926 TGCActgttgacttcttg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10619187 18 - 16319837 TGCACTGTTGACTTCTTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241686 18 + 20526591 TGCActgttgactttttg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119214324 18 + 128539186 TGCACTGTTGACTTCTTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534765 18 + 6255621 TGCActgttgacttcttg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4590258 18 - 8658521 TGCACTGTTGACTTCTTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793935 18 + 124281992 TGCATTGTTGACTTCCTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 438258 18 - 9212255 TGCATTGTTGACTTCTTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2853333 18 + 4466143 TGCATTATTGACTTCTTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1561821 17 + 5364348 TGCATTGGTGACTTC-TG i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124800424 18 + 151834684 tacatatataaacacaca i mm10.chr5 I 213 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e dasNov3.JH568189 820384 316 - 1116856 I e canFam3.chr26 33143302 0 - 38964690 C e otoGar3.GL873618 4286787 0 + 7922563 C a score=25022.000000 s hg38.chr12_KI270834v1_alt 48347 2 + 119498 tc s panTro5.chr12 127334380 2 + 137163284 tc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125685214 2 + 135337776 tc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198605 2 - 8369578 tc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846546 2 + 106955855 tc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971889 2 + 133663169 tc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128219268 2 + 137757926 tc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10619205 2 - 16319837 TC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241704 2 + 20526591 tc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119214342 2 + 128539186 TC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534783 2 + 6255621 tc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4590276 2 - 8658521 TC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793953 2 + 124281992 TC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 438276 2 - 9212255 TC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2853351 2 + 4466143 TC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1561838 2 + 5364348 TT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4286787 2 + 7922563 tc i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124800442 2 + 151834684 tt i mm10.chr5 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e dasNov3.JH568189 820384 316 - 1116856 I e canFam3.chr26 33143302 0 - 38964690 C a score=1600548.000000 s hg38.chr12_KI270834v1_alt 48349 172 + 119498 tgtccatctg----------------------------tctgtccatctgcccatccatc----aatttg----tccattcgtccatctgtccatccatccatccGTTCattaattgaattaacatatatttattcagctcttcctatgggactggtgctgtgta--gt------caacacctatgcagttcctgccctcatgaagc-tgtagtatc s panTro5.chr12 127334382 172 + 137163284 tgtccatctg----------------------------tctgtccatctgcccatccatc----aatttg----tccattcgtccatctgtccatccatccatccattcattaattgaattaacatatgtttattcagctcttcctatgggactggtgctgtgta--gt------caacacctatgcagttccttccctcatgaagc-tgtagtatc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125685216 172 + 135337776 tgtccatctg----------------------------tctgtccatctgcccatccatc----aatttg----tccattcgtccatctgtccatccatccatccatTCattaattgaattaacatatatttattcagctcttcctatgggactggtgctgtgta--gt------caacacctatgcagttccttccctcatgaagc-tgtagtatc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198607 172 - 8369578 tgtccatctg----------------------------tctgtccatctgCCCATCCATC----AATTTG----TCCATTCGTCCATCTGTCCATCCGTCCATCCattcattaattgaattaacatatatttattcagctcttcctatgggactggtgctgtgta--gt------caacacctatgcagttcctgccctcatgaagc-tgtagtatc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846548 172 + 106955855 tgtccatctg----------------------------tctgtccatctgcccatccatc----aatttg----tccattcgtccatctgtccatccatccatccatTCattaattgaattaacatatatttattcagctcttcctatgggactggtgctgtgta--gt------caacacctatgcagttcctgccctcatgaagc-tgtagtatc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123971891 176 + 133663169 tgtccatctgtcca------------------------tccatccatttgtccatttgtc----tgtctg----tccatccatccacccatccatctatccatcTGTTCattaattgaattaacatatattcattcagcccttcctatgagactggtgctgtgta--gt------caacacctatgcagttcctgccctcatgaagc-tgtagtatc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128219270 176 + 137757926 tgtccatctgtcca------------------------tccatccatttgtccatttgtc----tgtctg----tccatccacccatccatccatctatccatcTGTTCattaattgaattaacatatattcattcagcccttcctatgagactggtgctgtgta--gt------caacacctatgcagttcctgccctcatgaagc-tgtagtatc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10619207 180 - 16319837 TGTCCATCTGTCCA------------------------TCCATCCATTTGTCCACTTGTC----TGTCTGtccatccatccacccatccatccatctatccatcTGTTCattaattgaattaacatatattcattcagcccttcctatgagactggtgctgtgta--gt------caacacctatgcagttcctgccctcatgaagc-tgtagtatc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241706 180 + 20526591 tgtccatctgtcca------------------------tccatccatttgtccatttgtc----tgtctgtccatccatccacccatccatccatctatccatcTGTTCattaattgaattaacatatattcattcagcccttcctatgagactggtgctgtgta--gt------caacacctatgcagttcctgccctcatgaagc-tgtagtata i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119214344 184 + 128539186 TGTCCATCTGTCCA------------------------TCTGCCCATCCATCCATTTGTCCATTCGTCTGTCCATCCATCCTCCCATCCATCCATCTATCCATCTGTTCattaattgaattaacatatatttattcagctcttcctatgagactggtgctgtgta--gt------gaacacctgtgcagttcctgccctcgtgaagc-tgtagtatc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534785 180 + 6255621 tgtccatctgtcca------------------------tccatccatttgtccatttgtc----tgtctgtccatccatccacccatccatccatctatccatcTGTTCattaattgaattaacatatattcattcagcccttcctatgagactggtgctgtgta--gt------caacacgtatgcagttcctgccctcatgaagc-tgtagtatc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4590278 204 - 8658521 TGTCCATCTGTCCATCTGCCCATCCATCCATCTGCCCGTCCATGCATTTGTCCATTCATC----TGTCTGtccatccatccacccatccatccatctatccatcTGTTCattaattgaattaacatatatttattcagctcttcctatgcgactggtgctgtgta--gt------caacacctatgcagttcctgccctcgtgaagc-cgtagtatc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114793955 118 + 124281992 TG----------------------------------------------------------------------------------------TCCATCCATCCATCCGTTCattaattgaattaacatatatttattcagcacttcctatgggactggtgctgcgta--gt------caacacctatg--gttcctgccctcatgaagc-tgtggtctc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 438278 144 - 9212255 TGtccatctg------------------------------------------------tc----cattcg----tccatcca--------tccatccatccatccactcattaatggaattaacatatatttattcagcacttcctatgggactggtgctgtgta--gt------caacacctatgtagttccggccctcatgaagc-tatagtcac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2853353 152 + 4466143 TGtccatcta------------------------------------------------tc----catttg----tccatccatccatctgtccatccaaccatccatTCattaactgaattaacatatatttattcagcacttcctatgggactggtgctgtgta--gt------caacacctatgtagttcctgccctcatgaagc-catagtcgc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1561840 152 + 5364348 TGtccgtcta------------------------------------------------tc----cattcg----tccttccatccatctgtccatccatccatccatTCattaattgaattaacatatatttattcaacacttcttatgggactggtgctgtgta--gt------caacacctatgtagttcctgccctcaggaagc-tatagtttc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4286789 162 + 7922563 tactcatctg----------------------------tctattcatctatccatctgtc----catcTA-------------CCTCCTGTCTATCCCTCTA---Gtccatccatctaattaacata--tttacagagcacctcctatgggactggtgctgtgca--gt---gtgtaaagcctgtgtagtccctgctgtcataaggcttacagtcta i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124800444 181 + 151834684 cttccatctatcca------------------------tccactcatctacccatccatg----caaatgcatatatacacatccttccatccatccatccacccattcatccatccatcca--ctccatTTGCTGAACTCTTCCCAGGAAACTGGTGATGTGCCATGT------GTAAAGCTCAGCAGTTGTTGCCTTTGTGGAATGAACAGTGTG i mm10.chr5 C 0 C 0 s canFam3.chr26 33143302 160 - 38964690 TGTGCATCTA----------------------------TT------------------CC----TATATA----TGCATGCACCCACACACCCTTTTATCCATCCATGCatccatccaattaacatatatttattgagcacctcctatgggtctggtgctgtgca--gtgatgaacaaaacata-gtagtccctgcccttatggagcttatagtcca i canFam3.chr26 C 0 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I e dasNov3.JH568189 820384 316 - 1116856 I a score=2215964.000000 s hg38.chr12_KI270834v1_alt 48521 191 + 119498 gtaagggagacaaa----------------------------cttcaaaaaaca-caatcacaaatggatatatacagttgcaacctttgagaagccccatgaaactgaaaccgaggtgccctg-gagagtaacg--ggaaaaatgagcttgagctgggatggtc----agccaacgcctctctgaCTCCTACTTTGCGATACTACTGTTCTCTTTTCTTTTTTAAA- s panTro5.chr12 127334554 190 + 137163284 gtaagggagacaaa----------------------------cttcaaaaaaca-caatcacaaatggatatatacagttgcaacctttgagaagccccatgaaactgaaaccgaggtgccctg-gagagtaacg--ggaaaaatgagcttgagctgggatggtc----agccaacgcctctctgaCTCCTACTTTGCGATACTACTGTTCTCTTTTC-TTTTTAAA- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125685388 190 + 135337776 gtaagggagacaaa----------------------------cttcaaaaaaca-caatcacaaatggatatatacagttgcaacctttgagaagccccatgaaactgaaaccgaggtgccctg-gagagtaacg--ggaaaaatgagcttgagctgggatggtc----agccaacgcctctctgaCTCCTACTTTGCGATACTACTGTTCTCTTTTC-TTTTTAAA- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198779 190 - 8369578 gtaagggagacaaa----------------------------cttcaaaaaaca-caatcacaaatggatatatacagttgcaacctttgagaagccccatgaaactgaaaccgaggtgccctg-gagagtaacg--ggagaaatgagattgagctgggatggtc----agccaacgcctcTCTGACTCCCACTTTGCGATACTACTGTTCTCTTTTC-TTTTTTAA- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846720 190 + 106955855 gtaagggagacaaa----------------------------cttcaacaaaca-caatcacagatggatatatacagttgcaacctttgagaagccccatgaaacggaaaccgaggtgccctg-gagagtaacg--ggagaaatgagcttgagttgggatggtc----agccaaggcctctctggCTCCCGCTTTGCGATACTGCTATTCTCTTTTC-TTTTTTAT- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123972067 190 + 133663169 gtaagggagacaaa----------------------------cttcaaaaaaca-caatcacaaatggatatatacagttgcaacctttgagaagccctgtgaaactgaaaccaaggtgccctg-gagagtgacg--ggagaaatgagcttgagttaggatggtc----agccaaggcctctctgaCTCCCGCTTTGCGATACTACTATTCTTTTTTC-TTTTTTAT- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128219446 190 + 137757926 gtaagggagacaaa----------------------------cttcaaaaaaca-caatcacaaatggatatatacagttgcaacctttgagaagccctgtgaaactgaaaccaaggtgccctg-gagagtgacg--ggagaaatgagcttgagttaggatggtc----agccaaggcctctctgaCTCCCGCTTTGCGATACTACTATTCTCTTTTC-TTTTTTAT- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10619387 190 - 16319837 gtaagggagacaaa----------------------------cttcaaaaaaca-caatcacaaatggatatatacagttgcaacctttgagaagccctgtgaaactgaaaccaaggtgccctg-gagagtgacg--ggagaaatgagcttgagttaggatggtc----agccaaggcctctctgaCTCCCGCTTTGCGATACTACTATTCTCTTTTC-TTTTTTAT- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12241886 190 + 20526591 gtaagggagacaaa----------------------------cttcaaaaaaca-caatcacagatggatatatacagttgcaacctttgagaagccctgtgaaactgaaaccaaggtgccctg-gagagtgacg--ggagaaatgagcttgagttaggatggtc----agccaaggcctctctgaCTCCCGCTTTGCGATACTACTATTCTCTTTTC-TTTTTTAT- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119214528 190 + 128539186 gtaagggtgacaaa----------------------------cttcaaaacaca-caatcacagatggatatatacagttgcaacctttgagaagccctgtggaactgaaaccgaggtgccctg-gagagtgacg--ggagaaatgagcttgagttaggatggtc----agccaaggcctcTCTGACTCCCGCTTTGCGATACTACTATTCTCTTTTC-TTTTTTAT- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 534965 190 + 6255621 gtaagggagacaaa----------------------------cttcaaaaaaca-cagtcacaaatggatatatacagttgcaacctttgagaagccctgtgaaactgaaaccaaggtgccctg-gagagtgacg--ggagaaatgagcttgagttaggatggtc----agccaaggcctctctgaCTCCCGCTTTGCGATACTACTATTCTCTTTTC-TTTTTTAT- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4590482 190 - 8658521 gtaagggagacaaa----------------------------cttcaaaaaaca-caatcacagatggatatatacagctgcaacctttgagaagccctgtgaaactgaaaccgaggtgccctg-gagagggacg--ggagaaatgagcttgagtcaggatggtc----agccaaggcctctctgaCTCCCGCTTTGCGATGCTACTATTCTCTTTTC-TTTTTTAT- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114794073 178 + 124281992 gtaagggagacaga----------------------------cttcaaaaaaca-caatcacaaatggatatatacagttgcagcctttgagaagccccatgaaactgcaaccagggtgccctg-gagagtaaca--ggagaaatgagcttgaggtgggatggtc----agccaaggcctcTCTAACTC-------------CTACTATTCTCTTTTCTTTGTTTAT- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 438422 191 - 9212255 ataagggagacaga----------------------------tttcaaaaaaca-cagtcacaaatggatatatacagttgcagcctttgagaagccccatgaaactgcaaccggggtgccctg-gagagttaca--ggagaagtgagcttgagttgggatggtc----agccaaggcctcTCTAACTCCGGCTTTGCGATACTACTGTTCTCTTTTCTTTTTTTAT- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2853505 191 + 4466143 gtaagggagacaga----------------------------cttcaaaaaaca-caatcacaaatgcgtatatacagttgcagcctttgagacgccccatgaaactgcagccagggtgccctg-gagagtcaca--ggagaagtgagcttgtggtgggatggtc----agccaaggcctcTCTGACTCCGGCTTTGTGATAATACTGTTCTCTTTTCTTTTTTTAT- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1561992 191 + 5364348 gtaagagagacaga----------------------------cttcaaaaaaca-caatcacaaatggacatatacggttgcagcctttgagaagccccatgaaactgcagccggggtgccctg-gagagtaaca--ggaggaatgagcttgagttgggatggtc----agccaaggcctGTCTAACTCCTGCTTTGCGATACTACTATTCTCTTTTCTTTTTTTAT- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4286951 185 + 7922563 gtgagtaagacaga----------------------------cttaaaaata------tcacaaatggatatgta--gttgtaaagcacgagaagccctatgaaactaaaaccagggtgttctgagagaataaca--ggcaaaataagatttagttcagatggtcagttagcaaaggcctccctgagTTCTGCTTTATGATACTA---TTCTCTTTTC-TTTAAAAA- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124800625 161 + 151834684 GTGAGGGAGACAGA----------------------------TTTTAAATC-------TCAGGAGTGAAAAGA------------ACTTGATAAGTCCCATGAGGACAATTCCAGAATGCTCGG-GGGA--AACA--GGAGGGGTGAGCTTTT------AAGGTC----A-CCACAGCCTTGCCAAGCCCTGCTTTTAGATACTACTTTTCTCTTTCC-TCTAAA--- i mm10.chr5 C 0 C 0 s canFam3.chr26 33143462 185 - 38964690 gagggggaagatgg----------------------------attaaaaaaa-----attacaaatgaatatata--gtggcaaaccttcagaaaccctatggaatgaaaaccagagtgctcagagagaggaaga--ggaaagacgggaattagtttaaatggtc----aggaaaggcatctctgagTTCTGCTTTATGATACTACCGTTATCTCTTT-TCTTTAAA- i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 820700 214 - 1116856 ggaagggagagagaaggggagagaaataaataaaaaataaatcttaaaaaaAAATTAAATACAAATGAATATGTA--ATTCCCAACTTTGACAAGCCGTATGAAACAAAACACAGAGTTCTC-A-GAGATTAATAGTGGAGAGATGGTCTTTAG-----ATTGTC----AGCAAAGTCCTCTCTGAGTTCTGCTTTATGGTACTACTTTTCTCTTTTT-TTCCTTAAA i dasNov3.JH568189 I 316 C 0 e micMur3.chr21 9454966 636 - 31815103 I e proCoq1.NW_012154285v1 6704279 515 - 9870158 I a score=5481510.000000 s hg38.chr12_KI270834v1_alt 48712 284 + 119498 AAAAATCAAGGTGGATGAATATGGCACGCAGCAGCCCATTGCCTTGCTGAAGCTGCTGTTGGAAAAAGGCTACTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGCTTTATTGCTGCAATGGGAAAGGCTGGAGGAGGCCGCAATGAAGTTGACCCAAGATTTATTTCGCTATTCAGTGTCTTCAATGTGCCATTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATCCTGAAAGGCCACACCTCGGTAAC-----TTGATTTT s panTro5.chr12 127334744 284 + 137163284 AAAAATCAAGGTGGATGAATACGGCACGCAGCAGCCCATTGCCTTGCTGAGGCTGCTGTTGGAAAAAGGCTACTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGCTTTATTGCTGCAATGGGAAAGGCTGGAGGGGGCCGCAATGAAGTTGACCCAAGATTTATTTCGCTGTTCAGTGTCTTCAATGTGCCATTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATCCTGAAAGGCCATACCTCGGTAAC-----TTGATTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125685578 284 + 135337776 AAAAATCAAGGTGGATGAATACGGCACGCAGCAGCCCATTGCCTTGCTGAGGCTGCTGTTGGAAAAAGGCTACTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGCTTTATTGCTGCAATGGGAAAGGCTGGAGGGGGCCGCAATGAAGTTGACCCAAGATTTATTTCGCTATTCAGTGTCTTCAATGTGCCATTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCGTCCATCCTGAAAGGCCATACCTCGGTAAC-----TTGATTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8198969 284 - 8369578 AAAAATCAAGGTGGATGAATACGGCACGCAGCAGCCCATTGCCTTGCTGAAGCTGCTGTTGGAAAAAGGCTACTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGCTTTATTGCTGCAATGGGAAAGGCTGGAGGAGGCCGCAATGAAGTTGACCCGAGATTTATTTCGCTATTCAGTGTCTTCAACGTGCCATTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATCCTGAAAGGCCATACCTCGGTAAC-----TTGATTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97846910 284 + 106955855 AAAAATCAAGGTGGATGAATACGGCACGCAGCAGCCAATTGCCTTGCTGAAGCTGCTGTTGGAAAAAGGCTACTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGGTTTATTGCTGCAATGGGAAAGGCTGGAGGAGGCCGTAATGAAGTTGACCCAAGATTTATTTCACTATTCAGCGTCTTCAACGTGCCATTTCCTTCAGAGCAGTCTCTGCATTTAATTTATTCCTCCATCCTGAAAGGCCATACCTCGGTAAC-----TTGATTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123972257 284 + 133663169 AAAAATCAAGGTGGATGAATACGGCACGCAGCAGCCAATTGCCTTGCTGAAGCTGCTGTTGGAAAAAGGCTACTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGCTTTATCGCTGCAATGGGGAAAGCCGGAGGAGGCCGCAATGAAGTTGACCCGAGATTTATTTCACTATTCAGTGTCTTCAACGTGCCGTTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATCCTGAAAGGCCATACCTCGGTAAC-----TTGATTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128219636 284 + 137757926 AAAAATCAAGGTGGATGAATACGGCACGCAGCAGCCAATTGCCTTGCTGAAGCTGCTGTTGGAAAAAGGCTACTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGCTTTATCGCTGCAATGGGGAAAGCCGGAGGAGGCCGCAATGAAGTTGACCCGAGATTTATTTCACTATTCAGTGTCTTCAACGTGCCGTTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATCCTGAAAGGCCATACCTCGGTAAC-----TTGATTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10619577 284 - 16319837 AAAAATCAAGGTGGATGAATACGGCACGCAGCAGCCAGTTGCCTTGCTGAAGCTGCTGTTGGAAAAAGGCTACTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGCTTTATCGCTGCCATGGGGAAAGCCGGAGGAGGCCGCAATGAAGTTGACCCGAGATTTATTTCACTATTCAGTGTCTTCAACGTGCCGTTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATCCTGAAAGGCCATACCTCGGTAAC-----TTGATTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12242076 284 + 20526591 AAAAATCAAGGTGGATGAATACGGCACGCAGCAGCCAATTGCCTTGCTGAAGCTGCTGTTGGAAAAAGGCTACTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGCTTTATCGCTGCAATGGGAAAAGCCGGAGGAGGCCGCAATGAAGTTGACCCGAGATTTATTTCACTATTCAGTGTCTTCAACGTGCCGTTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATCCTGAAAGGCCATACCTCGGTAAC-----TTGATTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119214718 284 + 128539186 AAAAATCAAGGTGGATGAATACGGCACGCAGCAGCCAATTGCCTTGCTGAAGCTGCTGTTGGAAAAAGGCTATTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGCTTTATCGCTGCAATGGGAAAAGCCGGAGGAGGCCGCAATGAAGTTGACCCGAGATTTATTTCACTATTCAGTGTCTTCAACGTGCCGTTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATCCTGAAAGGCCATACCTCGGTAAC-----TTGATTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 535155 284 + 6255621 AAAAATCAAGGTGGATGAATACGGCACGCAGCAGCCAATTGCCTTGCTGAAGCTGCTGTTGGAGAAAGGCTATTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGCTTTATTGCTGCAATGGGAAAAGCCGGAGGAGGCCGCAATGAAGTTGACCCGAGATTTATTTCACTATTCAGTGTCTTCAACGTGCCGTTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATCCTGAAAGGCCATACCTCGGTAAC-----TTGATTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4590672 284 - 8658521 AAAAATCAAGGTGGATGAATATGGCACGCAGCAGCCAATTGCCTTGCTGAAGCTGCTGTTGGAAAAAGGCTACTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGCTTTATCGCTGCAATGGGAAAAGCCGGAGGAGGCCGCAATGAAGTTGACCCGAGATTTATTTCACTATTCAGTGTCTTCAACGTGCCGTTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATCCTGAAAGGCCATAGCTCGGTAAC-----TTGCCTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114794251 284 + 124281992 AAAAATCGAGGTGGACGAATATGGCACCCAGCAGCCGATTGCCTTGCTGAAGCTGCTGTTGGAAAAAAGCTACTTATATGACCGTGGCAAGGAGCTGAACTGCAAGAGCATTCGAGACCTTGGCTTTATCGCTGCGATGGGAAAAGCTGGAGGAGGCCGCAATGAAGTTGACCCGAGATTTATTTCACTATTCAGTGTCTTCAACGTGCCATTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATTCTGAAAGGCCATACCTCGGTAAC-----TTGATTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 438613 284 - 9212255 AAAAATCAAGGTGGATGAATATGGCACACAGCAGCCAATTGCCTTGCTGAAGCTGCTGTTGGAAAAAGGCTACTTATATGACCGTGGCAAGGAGCTGAACTGCAAAAGCATTCGAGACCTTGGCTTTATCGCTGCGATGGGAAAAGCCGGAGGAGGCCGCAATGAAGTTGACCCGAGATTTATTTCACTGTTCAGTGTCTTCAACGTGCCATTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATTCTGAAAGGCCATACCTCGGTAAC-----TTGATTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2853696 284 + 4466143 AAAAATCAAGGTGGATGAATATGGCACACAGCAGCCAATTGCCTTGCTGAAGCTGCTGTTGGAAAAAGGCTACTTATATGACCGTGGCAAGGAGCTGAACTGCAAGAGCATTCGAGACCTTGGCTTTATCGCTGCGATGGGAAAAGCCGGAGGGGGCCGCAATGAAGTTGACCCGAGATTTATTTCACTATTCAGTGTCTTCAACGTGCCATTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATTCTGAAAGGCCATACCTCGGTAAC-----TTGATTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1562183 284 + 5364348 AAAAATCCAGGTGGATGAATATGGCACACAGCAGCCAATTGCCTTGCTGAAGCTGCTGTTGGAAAAGGGCTACTTATATGATCGTGGCAAGGAGCTGAACTGCAAAAGCATTCGAGACCTTGGCTTTATCGCTGCGATGGGAAAAGCCGGAGGAGGCCGCAATGAAGTTGACCCGAGATTTATTTCACTATTCAGTGTCTTCAACGTGCCATTTCCTTCAGAAGAGTCTCTGCATTTGATTTATTCCTCCATTCTGAAAGGCCATACCTCGGTAAC-----TTGATTTT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9455602 284 - 31815103 AAAAATCGAGGTGGACGAATACGGCACCCAGCAGCCGATTGCCTTGCTGAAGCTGCTGCTGGAGAAAGGCTACCTGTACGACCGCGGGAAGGAGCTGAACTGCAAGAGCATTCGCGACCTTGGCTTCATCGCTGCCATGGGGAAAGCCGGCGGAGGCCGCAACGAGGTCGACCCGAGGTTCATTTCGCTGTTCAGTGTCTTCAACGTGCTGTTCCCTTCAGAGAAGTCTTTGCATTTGATTTACTCCTCCATCCTGAGAGGCCATACCTCGGTAAC-----TCGGTTTT i micMur3.chr21 I 636 C 0 s proCoq1.NW_012154285v1 6704794 284 - 9870158 AAAAATCGAGGTGGACGAATACGGCACCCAGCAGCCGATCGCCTTGCTGAAACTGCTGCTGGAGAAGGGCTACTTGTATGACCGGGGGAAGGAGCTGAACTGCAAGAGCATTCGCGACCTCGGCTTCATCGCCGCCATGGGAAAAGCCGGCGGAGGCCGCAACGAAGTCGACCCGAGATTTATTTCGCTGTTCAGTGTCTTCAACGTGCTGTTCCCTTCAGAGGAGTCTTTGCATTTAATTTACTCCTCCATCCTGAAAGGCCATACCTCGGTAAC-----TTGGtttt i proCoq1.NW_012154285v1 I 515 I 349 s otoGar3.GL873618 4287136 284 + 7922563 AAAAATCAAGGTGGATGAATATGGCACACAGCAGCCCATTGCCTTGCTGAAATTGCTGTTGGAAAAAGGCTACTTGTATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGCTTTATTGCTGCAATGGGAAAAGCTGGTGGAGGCCGCAATGAAGTCGACCCAAGATTTATCTCACTGTTCAGCGTCTTTAATGTGCCATTCCCATCAGAGGAGTCTTTGCATTTAATTTATTCCTCCATCCTGAAAGGCCATACCTCGGTAAC-----TTAACTTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124800786 276 + 151834684 AACCTGCCAGGTGGATGAGTATGGTACCCAGCAGCCCATCGCTTTGCTGAAGCTGTTGCTAGAAAAGGGCTACTTATATGACCGTGGGAAAGAACTCAACTGTAAGAGTATCCGTGATCTGGGCTTCATCGCTGCTATGGGGAAGGCAGGAGGGGGCCGCAACGAGGTGGACCCCAGATTCCTCTCACTGTTCAGCGTCTTCAATGTCCCTTTCCCATCGGAGGAGTCCCTGAACTTGATCTACTACTCCATTCTGAAGGGTCACACCTCGGTAAC------------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33143649 284 - 38964690 CAAAATCAAGGTGGATGAATATGGCACACAGCAGCCAATCGCCTTGCTGAAACTGCTGTTGGAAAAAGGCTACTTGTATGACCGTGGGAAGGAGCTGAATTGTAAAAGCATTCGGGACCTCGGCTTTATTGCTGCCATGGGAAAAGCTGGAGGAGGCCGCAATGAAGTTGATCCGAGATTTATTTCACTGTTCAGTGTCTTCAATGTACCATTTCCTTCAGAGGAGTCTTTGCATTTAATTTATTCCTCCATCCTGAAAGGCCACACTTCGGTAAC-----TTGCTTTT i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 820914 288 - 1116856 -CAAATCAAGGTGGATGAATATGGCACACAGCAGCCAATTGCCTTGCTGAAACTGCTGTTGGAAAAAGGATATTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAACATTCGAGACCTTGGCTTTGTCGCTGCTATGGGAAAAGCCGGAGGAGGCCGCAATGAAGTGGACCCAAGATTTATTTCCCTGTTCAATGTCTTCAACATACCATTTCCTTCAGATGAGTCTTTGCACTTAATCTATTCCTCCATCTTGAAAGGCCATACCTCGGTAACCTGACTTGATTTT i dasNov3.JH568189 C 0 C 0 a score=53399.000000 s hg38.chr12_KI270834v1_alt 48996 4 + 119498 AACT s panTro5.chr12 127335028 4 + 137163284 AACT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125685862 4 + 135337776 AACT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8199253 4 - 8369578 AACT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97847194 4 + 106955855 AACT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123972541 4 + 133663169 AATT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128219920 4 + 137757926 AATT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10619861 4 - 16319837 AATT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12242360 4 + 20526591 AATT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119215002 4 + 128539186 AATT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 535439 4 + 6255621 AATT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4590956 4 - 8658521 AATT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114794535 4 + 124281992 AATT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 438897 4 - 9212255 AATT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2853980 4 + 4466143 AATT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1562467 4 + 5364348 AATT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9455886 4 - 31815103 AATC i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4287420 4 + 7922563 AATC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33143933 4 - 38964690 AATT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 821202 4 - 1116856 GATT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124801062 0 + 151834684 C e proCoq1.NW_012154285v1 6705078 349 - 9870158 I a score=456392.000000 s hg38.chr12_KI270834v1_alt 49000 31 + 119498 AGAAGTCTAAACCGGAAGACCTTGTGTTGGG s panTro5.chr12 127335032 31 + 137163284 AGAAGTCTAAACCGGAAGACCTTGTGTTGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125685866 31 + 135337776 AGAAGTCTAAACCGGAAGACCTTGTGTTGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8199257 31 - 8369578 AGAAGTCTAAACCGGAAGACCTTGTGTTGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97847198 31 + 106955855 AGAAGTCTAAACCAGAAGACCTTGTGCTGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123972545 31 + 133663169 AGAAGTCTAAACCGGAAGACCTTGTGTTGGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128219924 31 + 137757926 AGAAGTCTAAACCGGAAGACCTTGTGTTGGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10619865 31 - 16319837 AGAAGTCTAAACCGGAAGACCTTGTGTTGGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12242364 31 + 20526591 AGAAGTCTAAACCGGAAGACCTTGTGTTGGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119215006 31 + 128539186 AGAAGTCTAAATCGGAAGACCTTGTGTTGGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 535443 31 + 6255621 AGAAGTTTAAACCGGAAGACCTTGTGTTGGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4590960 31 - 8658521 AGAAGTCTAAACCGGAAGACCTTGTGTTGGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114794539 31 + 124281992 AGAAGTCTAAACCGGAAGAGCTTGTATTGGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 438901 31 - 9212255 AGAAGTCTAAGCCGGAAGAGCTTGTATTGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2853984 31 + 4466143 AGAAGTCTAAACCGGAAGAGCTTGTATTGGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1562471 31 + 5364348 AGAAGTCTAAACGGGAAGAGCTTGTATTGGG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9455890 31 - 31815103 AGAAGTCTAAACTGGAAGACCTCGTGTCGGG i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6705427 31 - 9870158 AGAAGTCTAAACCGGAAGACCTTGTGTCGGG i proCoq1.NW_012154285v1 I 349 I 585 s otoGar3.GL873618 4287424 17 + 7922563 TAAGGTCT---------GTCCTTATG----- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124801062 17 + 151834684 --------------AAGGACGACGTGTGGGT i mm10.chr5 C 0 C 0 s canFam3.chr26 33143937 31 - 38964690 ACCAGTCTAACCTGGAGGACCTTGTGTTGAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 821206 31 - 1116856 GGATGCCTAAACTGAAAGGTCTTGGGTTAGG i dasNov3.JH568189 C 0 C 0 a score=5536.000000 s hg38.chr12_KI270834v1_alt 49031 1 + 119498 G s panTro5.chr12 127335063 1 + 137163284 G i panTro5.chr12 C 0 C 0 s panPan2.chr12 125685897 1 + 135337776 G i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8199288 1 - 8369578 G i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97847229 1 + 106955855 G i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123972576 1 + 133663169 A i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128219955 1 + 137757926 A i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10619896 1 - 16319837 A i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12242395 1 + 20526591 A i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119215037 1 + 128539186 A i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 535474 1 + 6255621 A i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4590991 1 - 8658521 A i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114794570 1 + 124281992 A i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 438932 1 - 9212255 A i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2854015 1 + 4466143 A i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1562502 1 + 5364348 A i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9455921 1 - 31815103 G i micMur3.chr21 C 0 I 581 s mm10.chr5 124801079 1 + 151834684 G i mm10.chr5 C 0 C 0 s canFam3.chr26 33143968 1 - 38964690 G i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 821237 1 - 1116856 G i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6705458 585 - 9870158 I e otoGar3.GL873618 4287441 0 + 7922563 C a score=450354.000000 s hg38.chr12_KI270834v1_alt 49032 45 + 119498 GGAAACATACAcagggctgacttatc-catgtaggcacagcagggt s panTro5.chr12 127335064 45 + 137163284 GGAAACATACAcagggctgacttatc-cattttggcacagcagggt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125685898 45 + 135337776 AGAAACATACAcagggctgacttatc-catttaggcacagcagggt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8199289 44 - 8369578 -GAAACATACAcagggctgacttatc-catttaggcacagcagggt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97847230 45 + 106955855 GGAAACATACAcagggctgacttacc-catttaggcacagcagggt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123972577 44 + 133663169 GGAAGCATACAcagggctgacttacc-cat-taggcacagcggggt i rheMac8.chr11 C 0 I 7 s macFas5.chr11 128219956 44 + 137757926 GGAAGCATACGcagggctgacttacc-cat-taggcacagcggggt i macFas5.chr11 C 0 I 7 s macNem1.NW_012010578v1 10619897 44 - 16319837 GGAAGCATACGcagggctgacttacc-cat-taggcacagcggggt i macNem1.NW_012010578v1 C 0 I 7 s cerAty1.NW_012001186v1 12242396 44 + 20526591 GGAAGCATTCAcagggctgacttacc-cat-taggcacagcggggt i cerAty1.NW_012001186v1 C 0 I 7 s chlSab2.chr11 119215038 44 + 128539186 GGAAACATACGcagggctgacttacc-cat-taggcacagcagggt i chlSab2.chr11 C 0 I 7 s manLeu1.NW_012103587v1 535475 44 + 6255621 GGAAGCATACGcagggctgacttacc-cat-taggcacagtggggt i manLeu1.NW_012103587v1 C 0 I 7 s colAng1.NW_012116043v1 4590992 44 - 8658521 GGAGACCTACGcagggctgacttacc-cat-tgggcacagcagggt i colAng1.NW_012116043v1 C 0 I 7 s calJac3.chr9 114794571 44 + 124281992 GGAAACGTACGcggggctgatgtatc-cat-tagctacagcagggt i calJac3.chr9 C 0 I 7 s saiBol1.JH378194 438933 44 - 9212255 GGAAACATACGcagggctgatgtatc-cat-taggtacagcagggt i saiBol1.JH378194 C 0 I 7 s cebCap1.NW_016107484v1 2854016 44 + 4466143 GGGAACATGCGcagggctgatgtatc-cat-taggtacggcagggt i cebCap1.NW_016107484v1 C 0 I 7 s aotNan1.NW_018491581v1 1562503 44 + 5364348 GGAAACATACAcagggctgatatatc-cgt-taggtacagcagggt i aotNan1.NW_018491581v1 C 0 I 39 s otoGar3.GL873618 4287441 33 + 7922563 -----------cagggcggacttaac-cat-taggtgcagcagaga i otoGar3.GL873618 C 0 I 7 s mm10.chr5 124801080 42 + 151834684 GGTGGGGTGTGATGGCCTGATTTATT-TAC-TC--TAGAGTAGGGT i mm10.chr5 C 0 C 0 s canFam3.chr26 33143969 44 - 38964690 AGAAGTGTATGTATggttgacttagg-cat-gaggcacagcaggca i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 821238 29 - 1116856 AGAAATGTACACTGGGCTGACTTGCCACA----------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9455922 581 - 31815103 I e proCoq1.NW_012154285v1 6705458 585 - 9870158 I a score=176388.000000 s hg38.chr12_KI270834v1_alt 49077 17 + 119498 tagggccctcaatactt s panTro5.chr12 127335109 17 + 137163284 tagggccctcaatactt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125685943 17 + 135337776 tagggccctcaatactt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8199333 17 - 8369578 tagggccctcaatactt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97847275 17 + 106955855 tagggccctcgatactt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123972628 17 + 133663169 tagggccctcaatactt i rheMac8.chr11 I 7 C 0 s macFas5.chr11 128220007 17 + 137757926 tagggccctcaatactt i macFas5.chr11 I 7 C 0 s macNem1.NW_012010578v1 10619948 17 - 16319837 tagggccctcaatactt i macNem1.NW_012010578v1 I 7 C 0 s cerAty1.NW_012001186v1 12242447 17 + 20526591 tagggccctcaatactt i cerAty1.NW_012001186v1 I 7 C 0 s chlSab2.chr11 119215089 17 + 128539186 tagggccctcagtactt i chlSab2.chr11 I 7 C 0 s manLeu1.NW_012103587v1 535526 17 + 6255621 tagggccctcagtactt i manLeu1.NW_012103587v1 I 7 C 0 s colAng1.NW_012116043v1 4591043 16 - 8658521 tgggg-cctcagtactt i colAng1.NW_012116043v1 I 7 C 0 s calJac3.chr9 114794622 17 + 124281992 tagggccctccatactt i calJac3.chr9 I 7 C 0 s saiBol1.JH378194 438984 17 - 9212255 tagggccctcgatactt i saiBol1.JH378194 I 7 C 0 s cebCap1.NW_016107484v1 2854067 17 + 4466143 tagggccctcgatactt i cebCap1.NW_016107484v1 I 7 C 0 s otoGar3.GL873618 4287481 17 + 7922563 aagggccggtgataccc i otoGar3.GL873618 I 7 C 0 s mm10.chr5 124801122 17 + 151834684 CTGCGCACTTAAGGCTT i mm10.chr5 C 0 I 474 s canFam3.chr26 33144013 17 - 38964690 caaggcccgcagtactt i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 821267 8 - 1116856 ---------CAGTGCCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9455922 581 - 31815103 I e proCoq1.NW_012154285v1 6705458 585 - 9870158 I e aotNan1.NW_018491581v1 1562547 39 + 5364348 I a score=5973349.000000 s hg38.chr12_KI270834v1_alt 49094 582 + 119498 ttaagggcctatgaaaatgttttaatttcttgcaaaatcagaag-aaaaaaa---------------------------tcatctttatac-gatgccattataaaatgtaattgtaa--tgtatttttatggaggaagaggtccatggaggtaaaagtgccttgggcccgtgggagtcctgatgtggccctgAGGTGCTCATGCCACATTGAGTGACAGCGAAGAATCAACTAGCAGGCTGGGGCCCTGGAGTCAGTCCCC-TTCTGCTCCGGgagcaggtctcttgaactctccta-ac-ctcattc--tcatttggagcggggagatcatgatggtccccacctcactg-ggttttgggagg-atgaaaggagag-aaatgcgtgtaaagggtgcctagtgcacactgcctagtg----catag------------------cagctactcattggttactagttactgc---tg-ttattA----TTATGATTTACTTGGCTCCTC---------CAAATGGAACCCATTCATTTAAACAACCATCTTCTGAT-CTGGCGTTTCCCTGCTAAAGCGGAGTCTGCACACTCGGAGGCTCCAGGGGCCAGGTGGGTAAGATAAAGGTGTGGAGT-GGCCAGGCCTGATCAGTAGGAACTA s panTro5.chr12 127335126 582 + 137163284 ttaagggcctatgaaaatgttttaatttcttgcaaaatcagaag-aaaaaaa---------------------------tcgtctttatac-gatgccattataaaatgtaattgtaa--tgtgttcttatggaggaagaggtccatggaggtaaaagtgccttgggcccgtgggagtcctgatgtggccctgAGGTGCTCATGCCACATTGAGTGACAGCGAAGAATCAACTAGCAGGCTGGGGCCCTGGAGTCAGTCCCC-TTCTGCTCCGGgagcaggtcccttgaactctccta-ac-ctcattc--tcatttggagcggggagatcatgatggtccccacctcactg-ggttttgggagg-atgaaaggagag-aaatgcgtgtaaagggtgcctagtgcacactgcctagtg----catag------------------cagctactcattggttactagttactgc---tg-ttattA----TTATGATTTACTTGGCTCCTC---------CAAATGGAACCCATTCATTTAAACAACCATCTTCTGAT-CTGGCGTTTCCCTGCTAAAGCGGAGTCTGCACGCTCGGAGGCTCCAGGGGCCAGGTGGGTAAGATAAAGGTGTGGAGT-GGCCAGGCCTGATCAGTAGGAACTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125685960 582 + 135337776 ttaagggcctatgaaaatgttttaatttcttgcaaaatcagaag-aaaaaaa---------------------------tcgtctttatac-gatgccattataaaatgtaattgtaa--tgtgttcttatggaggaagaggtccatggaggtaaaagtgccttgggcccgtgggagtcctgatgtggccctgAGGTGCTCATGCCACATTGAGTGACAGCGAAGAATCAACTAGCAGGCTGGGGCCCTGGAGTCAGTCCCC-TTCTGCTCCGGgagcaggtcccttgaactctccta-ac-ctcattc--tcatttggagcggggagatcatgatggtccccacctcactg-ggttttgggagg-atgaaaggagag-aaatgcgtgtaaagggtgcctagtgcacactgcctagtg----catag------------------cagctactcattggttactagttactgc---tg-ttattA----TTATGATTTACTTGGCTCCTC---------CAAATGGAACCCATTCATTTAAACAACCATCTTCTGAT-CTGGCGTTTCCCTGCTAAAGCGGAGTCTGCACGCTCGGAGGCTCCAGGGGCCAGGTGGGTAAGATAAAGGTGTGGAGT-GGCCAGGCCTGATCAGTAGGAACTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8199350 582 - 8369578 ttaagggcctatgaaaatgttttaatttcttgcaaaatcagaag-aaaaaaa---------------------------tcatctttatac-gatgccattataaaatgtaattgtaa--tgtgtttttatggaggaagaggtccatggaggtaaaagtgccttgggcccatgggagtcctgatgtggccctgAGGTGCTCATGCCACATTGAGTGACAGCGAAGAATCAACTAGCAGGCTGGGGTCCTGGAGTCAGTCCCC-TTCTGCTCCGGgagcaggtcccttgaactctccta-ac-ctcattc--tcatttggagcggggagatcatgatggtccccacctcactg-ggttttgggagg-atgaaaggagag-aaatgcatgtaaagggtgcctagtgcacactgcccagtg----catag------------------cagctactcattggttactagttactgc---tg-ttattA----TTATGATTTACTTGGCTCCTC---------CGAATGGAACCCATTCATTTAAACAACCATCTTCTGAT-CTGGCGTTTCCCTGCTAAAGCggagtctgcacactcggaggctccaggggccaggtgggtaagataaaggtgtggagt-ggccaggcctgatcagtaggaacta i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97847292 568 + 106955855 ttaagggcctatgaaaatgttttaatttctttcaaaatcagaag-gaaaaaa---------------------------tcatctttatac-gatgccattataaaatgtaattgtaa--tgtgtttttatggaggaaggggtccatggaggcaaaagtgccttgggcccgtgggagtcctgatgtggctctgAGGTGCTCATGCCACATTGAGTGACAGTGAAGAATCAACTAGCAGGCTGGGGCCCTGGAGTCAGTCCCC-TTCTGTTTCGGgagcaggtctcttgaactctccta-ac-ctcattc--tcatttggagcggggagatgatgatggtccccacctcactg-ggttttgggagg-atgaaaggagag-aaatgtgtgtaaagggtgcct--------------agtg----catag------------------cagctacttattagttactagttactgc---tg-ttattA----TTATGGTTTACTTGGCTCCTC---------CAAATGGAACCCATTCATTTAAACAACCGTCTTCTGAT-CTGGCGTCTCCCTGCTAAAGCGGGGTCTACGCACTCGGAGGCTCCAGGGGCCAGGTGGGTAAGATAAAGGTGTGGAGT-GGCCAGGCCTGATCAGTAGGAACTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123972645 584 + 133663169 tcaagggcctatgaaaatgttttaatttctttcaaaatcagaagaaaaaaaa---------------------------tcctctttatac-aatgtcattataaaatgtagttgtaa--tgtgtttttatggaggaaggggtccatggaggcaaaagtgccttgggctcgtgggagtcctgatgtggccctgAGGTGCTCATGCCACAGTGAGTGACAGCGAAGAATCAACTAGAAGGCTGAGGCCCTGGAGTCAGTCCCC-TTCTGCTCCAGGATCAGGTCCCTTGAACTCTCCTA-AC-CTCGTTC--TCATTTGGAGCGGGGAGATCATGACGGTCCCCACCTCACTG-GGTTTTGGAAGG-ATGAAAGGAGAGAAAATGTGTGTAAAGGGTGTCTAGTGCACACTGCCTAGTG----CATAG------------------CAGCTACTCATTAGTTGCTAGTTACTGC---TG-TTATTA----TTATGGTTTAGTTGGCTCCTC---------CAAATGGAACCCATTCATTTAAACAACCATCTTCTGAT-CTGGCGTTTCCCTGCTAAAGCGGGGTCTGCACACTTGGAGGCTCCAAGGGCCAGGTGGGTAAGATAAAGGTGTGGAGT-GGTCAGGCATGACCAGTAGGAACTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128220024 584 + 137757926 tcaagggcctatgaaaatgttttaatttctttcaaaatcagaagaaaaaaaa---------------------------tcctctttatac-aatgtcattataaaatgtagttgtaa--tgtgtttttatggaggaaggggtccatggaggcaaaagtgccttgggctcgtgggagtcctgatgtggccctgAGGTGCTCATGCCACAGTGAGTGACAGCGAAGAATCAACTAGCAGGCTGAGGCCCTGGAGTCAGTCCCC-TTCTGCTCCAGGATcaggtcccttgaactctccta-ac-ctcgttc--tcatttggagcggggagatcatgacggtccccacctcactg-ggttttggaagg-atgaaaggagagaaaatgtgtgtaaagggtgtctagtgcacactgcctagtg----catag------------------cagctactcattagttgctagttactgc---tg-ttattA----TTATGGTTTAGTTGGCTCCTC---------CAAATGGAACCCATTCATTTAAACAACCATCTTCTGAT-CTGGCGTTTCCCTGCTAAAGCGGGGTCTGCACACTTGGAGGCTCCAGGGGCCAGGTGGGTAAGATAAAGGTGTGGAGT-GGTCAGGCATGACCAGTAGGAACTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10619965 584 - 16319837 tcaagggcctatgaaaatgttttaatttctttcaaaatcagaagaaaaaaaa---------------------------tcctctttatac-aatgtcattataaaatgtagttgtaa--tgtgtttttatggaggaaggggtccatggaggcaaaagtgccttgggctcgtgggagtcctgatgtggccctgAGGTGCTCATGCCACAGTGAGTGACAGCGAAGAATCAACTAGCAGGCTGAGGCCCTGGAGTCAGTCCCC-TTCTGCTCCAGGATcaggtcccttgaactctccta-ac-ctcgttc--tcatttggagcggggagatcatgacggtccccacctcactg-ggttttggaagg-atgaaaggagagaaaatgtgtgtaaagggtgtctagtgcacactgcctagtg----catag------------------cagctactcattagttgctagttactGC---TG-TTATTA----TTATGGTTTAGTTGGCTCCTC---------CAAATGGAACCCATTCATTTAAACAACCATCTTCTGAT-CTGGCGTTTCCCTGCTAAAGCGGGGTCTGCACACTTGGAGGCTCCAGGGGCCAGGTGGGTAAGATAAAGGTGTGGAGT-GGTCAGGCATGACCAGTAGGAACTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12242464 583 + 20526591 tcaagggcctatgaaaatgttttaatttctttcaaaatcagaag-aaaaaaa---------------------------tcctctttatac-aatgtcattataaaatgtaattgtaa--tatatttttatggaggaaggggtccatggaggcaaaagtgccttgggctcgtgggagtcctgatgtggccctgAGGTGCTCATGCCACAGTGAGTGACAGTGAAGAATCAACTAGCAGGCTGAGGCCCTGGAGTCAGTCCCC-TTCTGCTCTGGGATCAGGTCCCTTGAACTCTCCTA-AC-CTCGttc--tcatttggagtggggagatcatgacggtccccacctcactg-ggttttgggagg-atgaaaggagagaaaatgtgtgtaaaggttgcctagtgcacactgcctagtg----cATAG------------------CAGCTACTCATTAGTTGCTAGTTACTGC---TG-TTATTA----TTATGGTTTACTAGGCTCCTC---------CAAATGGAACCCATTCATTTAAACAACCATCTTCTGAT-CTGGCGTTTCCCTGCTAAAGTGGGGTCTGCACACTCGGAGGCTCCAGGGGCCCGGTGGGTAAGATAAAGGTGTGGAGT-GGCCAGGCATGACCAGTAGGAACTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119215106 587 + 128539186 tcaagggcctatgaaaatgttttaatttctttcaaaatcagaag-aaaaaaa---------------------------tcctctttatac-aatgtcattataaaatgtaattgtaa--tgtgtttttatggaggaaggggtccatggaggcaaaagtgccttgggctcgtgggagtcctgatgtggccctgAGGTGCTCATGCCACAGTGAGTGACAGCGAAGAATCAACTAGCAGGCTGAGGCCCTGGAGTCAGTCCCC-TTCTGctctgggatcaggtcccttgaactctccta-ac-ctcgttc--tcatttggagcggggagatcatgacggtccccacctcactg-ggttttgggagg-atgaaaggagagaaaatgtgtgtaaagggtgcctagtgcacactgcctagtgcatacatag------------------cagtttctcattagttgctagttactgc---tg-ttattA----TTATGGTTTACTTGGCTCCTC---------CAAATGGAACCCATTCATTTAAACAACTCTCTTCTGAT-CTGGTGTTTCCCTGCTAAAGCggggtctgcacacttggaggctccaggggccaggtgggtaagataaaggtgtggagt-ggccaggcatgaCCAGTAGGAACTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 535543 583 + 6255621 tcaagggcctatgaaaatgttttaatttctttcaaaatcagaag-aaaaaaa---------------------------tcctctttatac-aatgtcattataaaatgtaattgtaa--tgtgtttttatggaggaaggggtccatggaggcaaaagtgccttgggctcgtgggaggcctgatgtggccctgAGGTGCTCATGCCACAGTGAGTGACAGCAAAGAATCAACTAGCAGGCTGAGGCCCTGGAGTCAGTCCCC-TTCTGctctgggatcaggtcccttgaactctccta-ac-ctcgttc--tcatttggagtggggagatcatgacggtccccacctcactg-ggttttgggagg-atgaaaggagagaaaatgtgtgtaaaggttgcctagtgcacactgcctagtg----catag------------------cagctacccattagttgctagttactGC---TG-TTATTA----TTATGGTTTACTAGGCTCCTC---------CAAATGGAACCCATTCATTTAAACAACCATCTTCTGAT-CTGGCATTTCCCTGCTAAAGTGGGGTCTGCACACTCGGAGGCTCCAGGGGCCCGGTGGGTAAGATAAAGGTGTGGAGT-GGCCAGGCATGACCAGTAGGAACTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4591059 583 - 8658521 tccagggcctgtgaaaatgttttaatttctttcaaaatcagaag-aaaaaaa---------------------------tcatctttatgc-aatgtcattataaaatgtaattgtaa--tgtgtttttatggaggaaggggtccatggaggcaaaagtgccttgggctcgtgggagtcctgatgtggccctgAGGTGCTCATGCCACAGTGAGTGACAGCGAAGAATCAACTAGCAGGCTGAGGCCCTGGAGTCAGTCCCC-TTCTGCTCCGGGATCAGGTCCCTTGAACTCTCCTA-AC-CTCGttc--tcatttggagtggggagatcatgacggtccccacctcactg-ggttttgggagg-atgaaaggagggaaaatgtgtgtaaaggttgcctagtgcacactgcctagtg----cATAG------------------CAGCTACTCATTAGTTACTAGTTACTGC---TG-TTATTA----TTATGGTTTACTCGGCTCCTC---------CAAATGGAACCTATTCATTTAAACAACCATCTTCTGAT-CTGGCGTTTCCCTGCTAAAGCGGGGTCTGCACACTCGGAGGCTCCAGGGGCCAGGTGGCTGAGATAAAGGTGTGGAGT-GGCCAGGCATGACCAGTAGGAACTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114794639 561 + 124281992 tcaagggcctctgaaaatgttttaatttctttcaaaatcagaag--aaaaaa---------------------------tcatctttatacaaatgccaatataaaatgtaattgtaa--catgtttttatggaggaaggagtccatggggg---aagtgccttgggcctgtgggagtcctgacgtg-ccctgAGATGCTCATGCCACATTGAGTGACAGCGAAGAATCAATTAGCGGGCTGGGGTCCTGGAGTCAGTCCCCATTCTGCTccctgagcaggttccttgaactctccta-ac-cccattg--ttgtttggaggggggagatcatgacggtccccacctcactg-ggttttgtgagg--------------aaatgcatgtaaagggtgt----ggcacgctacctagcg----cacag------------------cagatact-at--gttactagttattgc---ta-ttattA----TTATGGCTTACTTGGCTTCTC---------CAAATGGCACCCATTCATTTAAACAACCATCTTCTGATCCTGGCATTTTCCTACTAAAGCggggtctgcatactcagaggctccaggggccaggtgggtaagataaaggtgtggagg-ggccaggcatgatcagtagaaactg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 439001 569 - 9212255 ttaagggcctatgaaaatgttttaatttctttcaaaatcagaag-aaaaaaa---------------------------ttatcttcatacaaatgccaatataaaatgtaattgtaa--catgtttttacggaggaaggagtccatggaagaaaaagtgccttgggcttgtgggagtcctgacgtgaccctgAGATGCTCATGCCACACCGAGTGACAGCGAAGAATCAACTAGCAGGCTGGGGTCCTGGAGTCAATCCCCATTCTGCTCTGtgagcaggttccttgaactctccta-ac-ctccttg--tcatttggaggggggagatcatgatggtccccatctcactg-ggttttgggagg--------------aaatgcgtgtaaatggtgt----ggcacgctacctagca----catag------------------cagatacc-at--gttactagttattgctatta-ttattA----TTATGGTTTACTTGGCTTCTC---------CAAGTGGAACCCATTCATTTAAACAACCATCTTCTGATCCTGGCATTTTCCTACTAAAGCGGGGTCTGCATACTCAGAGGCGCCAGGGGCCAGGTGGGTAAGATAAAGGTGTGGCGG-GGCCAGGCATGATCAGTAGGAACTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2854084 566 + 4466143 ttaagggcctatgaaaatgttttattttctttcaaaatcagaag-aaaaaaA---------------------------tcatctttatacaaatgccaatataaaatgtgattgtaa--catgtttttatggaggaaggagtccatggaggcaaaagtgccttgggcctgtgggagtcgtGGCATGGACCTGAGATGCTCATGCCACACTGAGTGACTGCAAAGAATCCACTAGCAGGCTGGGGTCCTGGAGTCAGTCCCCATTCTGCTCTGtgagcaggttccttgaactgtccta-ac-ctcattg--tcgtttggaggggggagatcctgatggtccccacctcactg-ggttttgggagg--------------aaatgcatgtaaagggtgt----gacacgctgcctagcg----catag------------------cagatact-at--gttgctagttattGC---TA-TTATTA----TTATGGTTTACTTGGCTTCTC---------CAAGTGGAACCCATTCATTTAAATAACCATCTTCTGATCCTGGCATTTTCCTACTAAAGCGGGGTCTGCATACTCAGAGGCTCCAGAGGCCAGGTGGGTAAGATAAAGGTGTGGCGG-GGCCAGGCATGATCAGTAGGAACTG i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4287498 560 + 7922563 ctaagggcccaggaaaatgttttaatttcttttgaaatcaggag--gaaaaa---------------------------ttttctctataccagtggagttacaaattataattttaa--tgcatttttat---agaaggggtccaaaaagacaaaagtacctaagtcccatggcagtcatgatgtgcccctgAGTTACATACACCACACAGAGTTACAGCAGTGACTCAACCAAGGGCTTGGGGTCCT-GATTCAGTCCCCATTCTGCTccttgagcaagtcccttgaactctcccc-acgcccattc--ttatttggagcagagaga---tgatggtacttaccttgctg-gagttggagaga-atgagaggagaa-aaatgtgtgtacaatgtgcttg----acagtgcctagca----catagcaTCCATGTGCTAGCATCCAGTAACTCACTAGACACTAGTTATTGC---TA-TAATTA----GTAGGACGTATGTG--TCCTC---------CAAATGTAACCCATTCATTTAAACAATAACCTTTTGATCCTGACACTTCCCTACAAAAGCAGAGTCTGCACACT---------------CCATATGGGTGAGGCAAAGGCATGGAGGAGGCCACGTG---------------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33144030 607 - 38964690 ttgggggtccatgaatgtactttgacttcttttaaaaccagaag-aaaaaaagagaatataatctagcctggattatattcatctgtataccagtgcagtcataaaatataa-agtca--tatatttttatggaggatggggccca-gaaggcaaaagtgtcttgggtgcacagaagtcatgatgtagccctgAGTTACATGTGCCACATTGAATTGAGTCAGTGAATCAACTAGGGGACCAAGA-CCTGGAGTCAGGTCCCATTCTGCTccctgggtaagtcccttgagctctcctagac-ctggttc--tcatctggaacagggata--atgatggtgtccacctcactgagagtctgggaaa-atgaaaggagaa-aagggcacataaaatgtgt----ggcacagtgtctagca----cacag------------------aagatactcatcagatactagttACCGC---TC-TCATTA----TGAT--TTAACTTGGCTACCCCTCCCCCCACAAATGGAACCCATTCACTTAAATGATGACCTTCTGGTCCTGCCATTTCCCTCCTATAATGAGATTTGTGCACACAAAGCCTTGAGGGGC-----AGGAGAGGTAAAGATGTGGGAT-GGTGAGGTGTGATCCATAGGAACTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 821275 580 - 1116856 ---Aggacccatggaaatgttttaatttatttt-caatcataag-aaaaaat------gTAATCCAGCTTGGATtgtattcatctttatac-ca-acagtcataaaatacaatttttaacttttttttttttgaggaaggggtccacaaaggccaaagtgcttcgggtccacgaatatcatgatatggtcctgAGTTACATATGCCACATTGAGTGACAGCAGAGAGACCACCAgaggacttgggttctggagtcagtccca-ttctgctccttcaacagg-cccctgagctccctta-gc-ccagttctgttatctggaacagcaagataatgacgacacctgcctcattg-ggttttggggagcatggaaggaga--aaacgtgtgtaaggagtatgta--gcacagtgccaagca----catgg------------------ctggaactcactagatattagctatgat---tattTATTGTTCTTTATAACTTACTTGGCTCCCA----------------------TTCATTTAAATAATTACCTTCTGATTCTGGCATTTCCCTAATA-AGCAGGCTTTGCAAATTC--AGGTTTCAGGGCTTGGGCATGTAAGGTAAAGGTGCCTTGT-GGCCAGGTGTGATGAG--------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9455922 581 - 31815103 I e mm10.chr5 124801139 474 + 151834684 I e proCoq1.NW_012154285v1 6705458 585 - 9870158 I e aotNan1.NW_018491581v1 1562547 39 + 5364348 I a score=807245.000000 s hg38.chr12_KI270834v1_alt 49676 59 + 119498 TGAGCACCTGGCCCGTTCATGCCCTACCTGAAGGCATTTGCTTTCAAAACGGTGAGGTC s panTro5.chr12 127335708 59 + 137163284 TGAGCACCTGGCCCGTTCATGCCCTACCTGAAGGCATTTGCTTTCAAAACAGTGAGGTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125686542 59 + 135337776 TGAGCACCTGGCCCGTTCATGCCCTACCTGAAGGCATTTGCTTTCAAAACAGTGAGGTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8199932 59 - 8369578 tgagcacctggcccgttcatgccctacctgaaggCATTTGCTTTCAAAACTGTGAGGTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97847860 59 + 106955855 TGAGCACGTGGCCCGTTCATGCCCCACCTGAAGGCATTTGCTTTCAAAACTGTGAGGTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123973229 59 + 133663169 TGAGCACCTGGCCCATTCATGCCCTACCTGAAGGCATTTGCTTTCAAAACTGTGAGGTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128220608 59 + 137757926 TGAGCACCTGGCCCATTCATGCCCTACCTGAAGGCATTTGCTTTCAAAACTGTGAGGTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10620549 59 - 16319837 TGAGCACCTGGCCCATTCATGCCCTACCTGAAGGCATTTACTTTCAAAACTGTGAGGTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12243047 59 + 20526591 TGAGCACCTGGCCCATTCATGCCCTACCTGAAGGCATTTGCTTTCAAAACTGTGAGGTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119215693 59 + 128539186 TGAGCATCTGGCCCGTTCGTGCCCTACCTGAAGGCATTTGCTTTCAAAACTGTGAGGTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 536126 59 + 6255621 TGAGCACCTGGCCCATTCATGCCCTACCTGAAGGCATTTGCTTTCAAAACTGTGAGGTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4591642 59 - 8658521 TGAGCACCTGGCCCGTTCATGCCCTCCCTGAAGACATTTGCTTTCAAAACTATGAGGTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114795200 57 + 124281992 tgagcacctgctctgtTCATGCCCAACCTGAAGGCATTTACTTTCAAAA--CTGAGGTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 439570 59 - 9212255 TGAGCACCCAGCCTATTCATACCCTACTTGAAGGCATTAACTTTCAAAACTCTGAGGTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2854650 59 + 4466143 TGAGCACCTGGCCTGTTCATGCCCTACTTGAAGGCATTTACTTTCAAAACTCTGAGGTC i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9456503 59 - 31815103 TGAGCACCTGGCCTGCTCACGCCCTCCCTGCGGGCATTCGCTCTCAGAACGGCGAGGTC i micMur3.chr21 I 581 I 26 s proCoq1.NW_012154285v1 6706043 59 - 9870158 TGAGCACCCGGCCTGCTCACGCCCTACCCGAGGGCACTCGCTTTCAGAACCGTGAGGTC i proCoq1.NW_012154285v1 I 585 C 0 s otoGar3.GL873618 4288058 59 + 7922563 TGAGCACCTGGCCTGCTCACACCCCACCTGACGGCATTTGTTTTCAGAACTATGAGGTT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33144637 58 - 38964690 TGGGCACCTGGCATGTTCATGCCCTATCATAAGCTATTCAGTGTCAAAACTGTGAGTC- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 821855 59 - 1116856 TGGGTACCTGGAGCCTTCATGCCCTGCCTTGAGGCAATGGCCCTCAAAGCTGTGAGGTC i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124801139 474 + 151834684 I e aotNan1.NW_018491581v1 1562547 39 + 5364348 I a score=194167.000000 s hg38.chr12_KI270834v1_alt 49735 26 + 119498 CGTGCTGGTCAAATAAAACTCCCACC s panTro5.chr12 127335767 26 + 137163284 CGTGCTGGTCAAATAAAACTCCCACC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125686601 26 + 135337776 CGTGCTGGTCAAATAAAACTCCCACC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8199991 25 - 8369578 CGTGCTGGTCAAATAAAATTCCC-CC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97847919 26 + 106955855 TGTGCTGGTCAAATAAAACTCCCACC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123973288 22 + 133663169 TGTGCTAGTC----AAAACTCCCACT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128220667 22 + 137757926 TGTGCTAGTC----AAAACTCCCACT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10620608 22 - 16319837 TGTGCTAGTC----AAAACTCCCACT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12243106 22 + 20526591 TGTGCTAGTC----AAAACTCCCGCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119215752 22 + 128539186 TGTGCTAGTC----AAAACTCCCACT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 536185 22 + 6255621 TGTGCTAGTC----AAAACTCCCGCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4591701 22 - 8658521 TGTGCCAGTC----AAAACTCCCACT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114795257 26 + 124281992 TGTGCTGGTCAAATAAAGCTCCCACC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 439629 26 - 9212255 TGTGCTGGTCAAGTAAAGCCCCCACC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2854709 26 + 4466143 TGTGCTGGTCAAATAAAGCTCCCACC i cebCap1.NW_016107484v1 C 0 C 0 s proCoq1.NW_012154285v1 6706102 26 - 9870158 TGTGCCACCCAAACACAGCTCAGACT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4288117 26 + 7922563 TGTGCCACTCAGCTACAACTCAGACT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33144695 26 - 38964690 TACACTGGTCAAATCAAACTCAAACC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 821914 25 - 1116856 TACACTAGACAAATAAAACACAAAT- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9456562 26 - 31815103 I e mm10.chr5 124801139 474 + 151834684 I e aotNan1.NW_018491581v1 1562547 39 + 5364348 I a score=521476.000000 s hg38.chr12_KI270834v1_alt 49761 37 + 119498 GAGGGCTGGTTGGGGTCTTTGGTTTCACATCATGTTG s panTro5.chr12 127335793 37 + 137163284 GAGGGCTGGTTGGGGTCTTTGGTTTCACATCATGTTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125686627 37 + 135337776 GAGGGCTGGTTGGGGTCTTTGGTTTCACATCATGTTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8200016 37 - 8369578 GAGGGCTGGTTGGGGTCTTTGGTTTCACATCATGTTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97847945 36 + 106955855 GA-GGCTGGTTGGGGTCTTTGATTTCACGTCATGTTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123973310 37 + 133663169 GAGGGCTGGTTGGGGGCTTTGGTTTCACATCATGTTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128220689 37 + 137757926 GAGGGCTGGTTGGGGGCTTTGGTTTCACATCATGTTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10620630 37 - 16319837 GAGGGCTGGTTGGGGGCTTTGGTTTCACATCATGTTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12243128 37 + 20526591 GAGGGCTGGTTGGGGGCTTTGGTTTCACATCATATTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119215774 37 + 128539186 GAGGGTTGGTTGGGGGCTTTGGTTTCACATCATGTTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 536207 37 + 6255621 GAGGGCTGGTTGGGGGCTTTGGTTTCACATCATGTTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4591723 37 - 8658521 GAGGGCTGGTTGGGGGCTTTGGTTTCACATCATGTTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114795283 37 + 124281992 GAGGGCTGTGTGGGGTCTTTGGTTCCACATTATGCTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 439655 37 - 9212255 GAGGGCTGTGTGGGGTCTTTGGTTTCACATCATGCTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2854735 37 + 4466143 GAGGGCTGTGTAGGGTCTTTGGTTTCACATCATGTTG i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9456588 37 - 31815103 GAGGGCTGGCTGGGGTGTTTGGTTTCACATCATGTTG i micMur3.chr21 I 26 I 479 s proCoq1.NW_012154285v1 6706128 37 - 9870158 GAGGGCCGGCTTGGGTGTTTGGTTTCACGTCATGTTG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4288143 37 + 7922563 GAGGGCTGGTTTGGGCCTTTGGTTTCACATCATATTG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33144721 36 - 38964690 AAGGACTGGTTTGGGT-TTTGGTTTCACATCATGTTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 821939 37 - 1116856 GCACACTGGTTTTGGGTTTTGGGTTCACATCATTTAG i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124801139 474 + 151834684 I e aotNan1.NW_018491581v1 1562547 39 + 5364348 I a score=34188.000000 s hg38.chr12_KI270834v1_alt 49798 3 + 119498 ACT s panTro5.chr12 127335830 3 + 137163284 ACG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125686664 3 + 135337776 ACG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8200053 3 - 8369578 ACT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97847981 3 + 106955855 ACC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123973347 3 + 133663169 ACT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128220726 3 + 137757926 ACT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10620667 3 - 16319837 ACT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12243165 3 + 20526591 ACT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119215811 3 + 128539186 ACT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 536244 3 + 6255621 ACT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4591760 3 - 8658521 ACT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114795320 3 + 124281992 ACT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 439692 3 - 9212255 ACT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2854772 3 + 4466143 ACT i cebCap1.NW_016107484v1 C 0 C 0 s proCoq1.NW_012154285v1 6706165 3 - 9870158 ACT i proCoq1.NW_012154285v1 C 0 I 487 s otoGar3.GL873618 4288180 3 + 7922563 ATG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33144757 3 - 38964690 ACT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 821976 3 - 1116856 ACT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9456625 479 - 31815103 I e mm10.chr5 124801139 474 + 151834684 I e aotNan1.NW_018491581v1 1562547 39 + 5364348 I a score=385908.000000 s hg38.chr12_KI270834v1_alt 49801 42 + 119498 TCACAGTTAATGTGAAAATCTAGAGCAATACAAAAAAATCAg s panTro5.chr12 127335833 42 + 137163284 TGACAGTTAATGTGAAAATCTAGAGCAATACAAAAAAATCAg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125686667 42 + 135337776 TGACAGTTAATGTGAAAATCTAGAGCAATACAAAAAAATCAg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8200056 42 - 8369578 TGACAGTTAATGTGAAAACCTAGAGCAATACAAAAAAATCAg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97847984 42 + 106955855 TGACAGTTAATGTGAAAATCTAGAGCAATACAAACAAATCAg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123973350 38 + 133663169 T----GTTAGTGTGAAAATCTAGAGCAATACAAACAAATCAg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128220729 38 + 137757926 T----GTTAGTGTGAAAATCTAGAGCAATACAAACAAATCAg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10620670 38 - 16319837 T----GTTAGTGTGAAAATCTAGAGCAATACAAACAAATCAg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12243168 38 + 20526591 T----GTTAGTGTGAAAATCTAGAGCAATACAAACAAATCAg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119215814 38 + 128539186 T----GTTAGTGTGAAAATCTAGAGCAATACAAACAAATCAg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 536247 38 + 6255621 T----GTTAGTGTGAAAATCTAGAGCAATACAAACAAATCAg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4591763 38 - 8658521 T----ATTAGTGTGAAAATCTAGAGCAATACAAACAAATCAg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114795323 42 + 124281992 TGTCAGTTAATGTGAAAATCTAGAGCAATAAAAACAAGTCAg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 439695 42 - 9212255 TGTCAGTTAATGTGAAAATCTAGAGCAATAAAAGCAAGTCAg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2854775 42 + 4466143 TGTCAGTTAATGTGAAAATCTAGAGCAATAGAAATAAGTCAg i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4288183 42 + 7922563 TGTCAGTTACTATGAAAATCAACAGTGACGAAAGCAGATCAG i otoGar3.GL873618 C 0 I 50 s canFam3.chr26 33144760 37 - 38964690 ----TGTCAATGTGAAAATCTAGGGAAACA-AAGCAAATCAG i canFam3.chr26 C 0 I 218 s dasNov3.JH568189 821979 38 - 1116856 ----TGACAATGTGAAAATCCAGGTAAATTAAAACCCATCAG i dasNov3.JH568189 C 0 I 373 e micMur3.chr21 9456625 479 - 31815103 I e mm10.chr5 124801139 474 + 151834684 I e proCoq1.NW_012154285v1 6706168 487 - 9870158 I e aotNan1.NW_018491581v1 1562547 39 + 5364348 I a score=5030379.000000 s hg38.chr12_KI270834v1_alt 49843 598 + 119498 gcccggtgc----agtggctcacgcctgtaatcccagcactttgggaggttgaggcaggtggatcacttgaggtcaggagttcaagactagcctggtcaacatagcaaaacctcatctctactaaaaatac--aaaaattagccgggtgtggtggcaggcacctgtagtcccagctacttgggaggatgaggcaggaaaattgcttgaacctgggaggtgaaggctttagtgagccaagatcatgccactgcactccagcatgggcaacagagtctcaatct------------a----aaatacataaaaaaat--aaaa---------------------aaat-----------------taaaaaTAAGTAGTAAAATTCACAT-------------------AATggctgggcatggtggctcacacctgtatcccagcacttcgggaggctgaggagagcggatcactcgagcccagcagttcaagaccagcctgggcaatgtggtgaaaccctgtctctacaaaaaatatgaaac-attagccaggtatgatggtgtcctgtagtcccagctacaaaggaggctgaggtgggaggatcacttgagcccaagaggtcgaggctgcagtaagccctgatca-tgcccctgcactccagtctgggaaacagagcaag s panTro5.chr12 127335875 598 + 137163284 gccaggtgc----agtggctcacgcctgtaatcccagcactttgggaggttgaggcaggtggatcacttgaggtcaggagttcaagactagcctggtcaacatagcaaaaccccatctctactaaaaatac--aaaaattagccgggtgtggtggcaggcacctgtagtcccagctacttgggaggatgaggcaggaaaattgcttgaacctgggaggtgaaggctttagtgagccaagatcatgccactgcactccagcatgggcaacagagtctcaatct------------a----aaatacataaaaaaat--aaaa---------------------aaat-----------------taaaaaTAAGTAGTAAAATTCACAT-------------------AATggctgggcatggtggctcacacctgtatcccagcacttcgggaggctgaggagagcggatcacttgagcccagcagttcaagaccagcctgggcaatgtggtgaaaccctgtctctacaaaaaatatgaaac-attagccaggtatggtggtgtcctgtagtcccagctacaaaggaggctgaggtgggaggatcacttgagtccaagaggtcgaggctgcagtaagccctgatca-tgccactgcactccagtctgggaaacagagcaag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125686709 616 + 135337776 gccaggtgc----agtggctcacgcctgtaatcccagcactttgggaggttgaggcaggtggatcacttgaggtcaggagttcaagactagcctggtcaacatagcaaaaccccatctctactaaaaatac--aaaaattagccgggtgtggtggcaggcacctgtagtcccagctacttgggaggatgaggcaggaaaattgcttgaacctgggaggtgaaggctttagtgagccaagatcatgccactgcactccagcatgggcaacagagtctcaatct------------a----aaatacataaaaaaat---aaa---------------------aaat-----------------taaaaaTAAGTAGTAAAATTCACATNNNNNNNNNNNNNNNNNNNNATggctgggcatggtggctcacacctgtatcccagcacttcgggaggctgaggagagcggatcacttgagcccagcagttcaagaccagcctgggcaatgtggtgaaaccctgtctctacaaaaaatatgaaac-attagccaggtatggtggtgtcctgtagtcccagctacaaaggaggctgaggtgggaggatcacttgagtccaagaggtcgaggctgcagtaagccctgatca-tgccactgcactccagtctgggaaacagagcaag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8200098 598 - 8369578 gccaggcgc----agtggctcatgcctgtaatcccagcactttgggaggttgaggcaggtggatcactcgaggtcaggagttcaagactagcctggtcaacatggcaaaaccccatctctactaaaaatac--aaaaattagccgggtgtggtggcaggcacctgtagttccagctacttgggaggatgaggcaggaaaattgcttgaacctgggaggtgaaggctttagtgagccaagatcatgccactgcactccagcatgggcaacagagtctcaacct------------a----aaatacataaaaaaat--aaaa---------------------aaat-----------------aaaaaaTAAGTAGTAAAATTCACAT-------------------AATggctgggcatggtggctcacacctgtatcccagcactttgggaggctgaggagagcagatcacttgagcccagcagttcgagaccagcctgggcaatgtggtgaaaccctgtctctacaaaaaatatgaaac-attagccaggtatggtggtgtcctgtagtcccagctacaaaggaggctgaggtgggaggatcacttgagcccaagaggtcgaggctgcagtaagccctgatca-tgccactgcactccagtctgggaaacagagcaag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97848026 607 + 106955855 gccaggggc----agtggctcatgcctgtaatcctagcattttgggaggttgaggcaggtggatcacttgaggtcaggagttcaagactagcccggtcgacatggcaaaaccccatctctactaaaaatac--aaaaattagccaggtgtggtggcaggcacctgtagtcccagctacttgggaggatgaagcaggaaaattgcttgaacctgggaggtgaaggctttagtgagccaagatcatgccagtgcactccagcatgggcaacagagtctcaattt------------a----aagtaaataaataaat--aaaataata-------------aacaaAT-----------------AAAAAATAAGTAttaaaattcacat-------------------aatggctgagcatggtggctcacacctgtatcccagcagtttgggaggctgaggagagtggatcacttgagcccagcagtttgagaccagcctgggcaatgtggtgaaaccctgtctctacaaaaaatgtgaaacaattagccaggtatggtggtgtcctgtagtcccagctacaagggaggctgaggtgggaggatcacttgagctcgagaggtcaaggctgcagtaagccctgatca-tgccactgcactgcagtctgggaaacagagcaag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123973388 611 + 133663169 gccaggtgc----agtggctcaggcctgtaatcccagcactctgggaggttgaggcaggtggatcatttgaggtcaggagttcaagaccagcctggtcaacatggcagaaccccatctctactaaaaatac--aaaaattagctgggtatggtggtgggcacctgttgtcccagctacttgggaggatgaggcaggagaattgtttgaacctgggaggtgaaggcttcagtgagccaagattgtgccattgcactccagcatgggcaacagagtctcaatct------------aaaataaataaataaaataat--ttaaaaaag-------------taaaaaT-----------------AAAAAATAAGTAGTAAAATTCACAT-------------------AATggctgggcatggtggctcacacctgtatcccagcactttgggaggctgaggagagtggatcacttgatcccagcagtttgagactagcctgggcaatgtggtgaaaccctgtctctacaaaaaatactaaacaattagccaagtatgttggtgtcctgtagtcccagctacaagggaggctgagatgggaggatcacttgagcccaagaagtgggggctgcaataagctgtgatca-tgccactgcactccagcctgggaaacagagcaag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128220767 611 + 137757926 gccaggtgc----agtggctcaggcctgtaatcccagcactctgggaggttgaggcaggtggatcatttgaggtcaggagttcaagaccagcctggtcaacatggcagaaccccatctctactaaaaatac--aaaaattagctgggtatggtggtgggcacctgttgtcccagctacttgggaggatgaggcaggagaattgtttgaacctgggaggtgaaggcttcagtgagccaagattgtgccattgcactccagcatgggcaacagagtctcaatct------------aaaataaataaataaaataat--ttaaaaaag-------------taaaaaT-----------------AAAAAATAAGTAGTAAAATTCACAT-------------------AATggctgggcatggtggctcacacctgtatcccagcactttgggaggctgaggagagtggatcacttgatcccagcagtttgagactagcctgggcaatgtggtgaaaccctgtctctacaaaaaatactaaacaattagccaagtatggtggtgtcctgtagtcccagctacaagggaggctgagatgggaggatcacttgagcccaagaagtggaggctgcaataagctgtgatca-tgccactgcactccagcctgggaaacagagcaag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10620708 607 - 16319837 gccaggtgc----agtggctcaggcctgtaatcccagcactctgggaggttgaggcaggtggatcatttgaggtcaggagttcaagaccagcctggtcaacatggcagaaccccatctctactaaaaatac--aaaaattagctgggtatggtggtgggcacctgttgtcccagctacttgggaggatgaggcaggagaattgtttgaacctgggaggtgaaggcttcagtgacccaagattgtgccattgcactccagcatgggcaacagagtctcaatct------------a----aaataaataaaataat--ttaaaaaag-------------taaaaat-----------------aaaaaaTAAGTAGTAAAATTCACAT-------------------AATggctgggcatggtggctcacacctgtatcccagcactttgggaggctgaggagagtggatcacttgatcccagcagtttgagactagcctgggcaatgtggtgaaaccctgtctctacaaaaaatactaaacaattagccaagtatggtggtgtcctgtagtcccagctacaagggaggctgagatgggaggatcacttgagcccaagaagtggaggctgcaataagctgtgatca-tgccactgcactccagcctgggaaacagagcaag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12243206 593 + 20526591 gccaggtgc----agtggctcaggcctgtaatcccagcactctgggaggtcgaggcaggtggatcatttgaggtcaggagttcaagaccagcctggttaacatggcagaaccacatctctactaaaaatac--aaaaattagctgggtgtggtggtgggcacctgttgtcccagctacttgggaggatgaggcaggagaattgtttgaacctgggaggtgaaggcttcagcgagctgagattgtgccattgcactccagcatgggcaacagagtctcaatct------------aaaataaataaataaaataat--tttaaaaag-------------taaaaAT-----------------AAAAA------------------AT-------------------AATggctgggcatggtggctcacacctgtatcccagcactttgggaggctgaggagagtggatcacttgatcccagcagtttgagaccagcctgggcaatgtggtgaaatcctgtctctaccaaaaatactaaacaattagccaagtatggtggtgtcctgtagtcccagctacaagggaggatgagatgggaggatcacttgagcccaagaggtagaggctgcagtaagctgtgatca-tgccactctactccagcctgggaaacagagcaag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119215852 615 + 128539186 gccaggtgcaatgagtggctcaggcctgtaatcccagcactctgggaggttgaggcaggtggatcatttgaggtcaggagttcaagaccagcttggtcaacatggcagaaccccatctctactaaaaatac--aaaaattagctgggtgtggtggtgggcacctgttgtcccagctacttgggaggatgaggcaggagaattgtttgaacctgggaggtgaaggcttcagtgagccaagattgtgccattgcactccagcatgggcaacagagtctcaatct------------aaaataaataaataaaataat--aaaaaaaaG-------------TAAAGAT-----------------AAAAAATAAGTAGTAAAAATCACAT-------------------AATggctgggcatggtggctcacacctgtatcccagcactttgggagggtgaggagagcggatcacttgatcccagcagtttgagaccagcctgggcaatgtggtgaaaccctgcctctacaaaaaatactaaacaattagccaagtatggtggggtcctgtagtcccagctacaagggaggctgagatgggaggatcacttgagcccaagaggtggaggctgcagtaagctgtgatca-tgccactgcactccagcctgggaaacagagcaag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 536285 611 + 6255621 gccaggtgc----agtggctcaggcctgtaatcccagcactctgggaggtcgaggcaggtggatcatttgaggtcaggagttcaagaccagcctggtcaacatggcagaaccacatctctactaaaaatac--aaaaattagctgggtgtggtggtgggcacctgttgtcccagctacttgggaggatgaggcaggagaattgtttgaacctgggaggtgaaggcttcagcgagctgagattgtgccattgcactccagcatgggcaacagagtctcaatct------------aaaaaaaataaataaaataat--aaaaaaaaG-------------TAAAAAT-----------------AAAAAATAAGTAGTAAAATTCACAT-------------------AATggctgggcatggtggctcacacctgtatcccagcactttgggaggctgaggagagcggatcacttgatcccagcagtttgagaccagcctgggcaatgtggtgaaatcctgtctctaccaaaaatactaaacaattagccaagtatggtggtgtcctgtagtcccagctacaagggaggctgaggtgggaggatcacttgagcccaagaggtagaggctgcagtaagctgtgatca-tgccactgcactccagcctgggaaacagagcaag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4591801 613 - 8658521 gccaggtac----agtggctcaggcctgtaatcccagcactctgggaggttgaggcaagtggatcatttgaggtcaggagttcaagaccagcctggtcaacatggcagacccccatctctactaaaaatac--aaaaattagctgggtgtggtggtgggcacctgttgtcccagctacttgggaggatgaggcaggagaattgtttgaacctgggaggtaaaggcttcagtgaaccaagattgtgccattgcactccagcatgggcaacagagtctcaatct------------aaaataaataaataaaataataataaaaaaaG-------------TAAAAAT-----------------AAAAAATAAGTAGTAAAATTCACAT-------------------AATggctgggcatggtggctcacacctgtatcccagcactttgggaggctaaggagagcggatgacttgatcccagcaatttgagaccagcctgggcaatgtggtgaaaccccgtctctacaaaaaatactaaacaattagccaagtatagtagtgtcctgtagtcccagctacaagggaggctgagttgggaggatcacttgagcccaagaggtggaggctgcagtaagctgtgatca-tgccactgcactacagcctgggaaacagagcaag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114795365 638 + 124281992 gccaggcgt----ggtggctcacacctgtaatcctagcactttgagaggctgaggtgcatggatcacttgaagtcaggagttcaagaccagcctggtcagcatgtcaaaaccccgtctctactaaaaatac--aaaaattagccgggcatggtggtgggcacctgtagtcccagctacttgggaggatgaggcaggagaattgcttgaacctgggaggtgaagtcttcagtgagccgagatcgcgccactgcactccagtctgggaaacagagtcacaatct----------------caaacaaacaaaaaaaT--GAGCTGATGAGCTTCTCTGTCTTTCAATTTTTTAATCTCCTGTTTAAAAAAAAATACAgtaaaattcacat-------------------aatggctgggcatggtggctcacacctgtattgctgcactttgggagaccgagaagaacggatcacttgagcccaggagttcaagaccaccctgggcaatgtggtgaaaccctgtctctacaaaaaatgcaaaacaattagccaggcatggtggtgtcctgtgctcccagctacaagggaggctgaggtgggcggatcgcttgagcccgggaggtcaaggctgcagtgagccgcgatcattgccactgcactccagcctgggaagcagagcaag i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 439737 640 - 9212255 gccaggcgt----ggtggctcatacctgtaatcctagcactttgggaggccgaggcacatggatcacttgaagtcaggagttcaagaccagcctggtcaacatgtcaaaaccccgtctctactaaaaatac--aaaaattagccgggcatggtggtgggcacctgtagtcccagctacttgggaggatgaggcaggagaattgcttgaacctggaaggtgaagtcttcagtgagccgagattgcaccactgcactccagtctgggaaacagagtcacagtct------------caaacaaacaaacaaaaaaat--aaGCTGATGAGCTTCTCTGTCTTTCAATTTTTTAATCTCCTGTTT-TAAAAaaatatagtaaaattcacac-------------------aatggctgggcatggtgactcacacctgtgtcgctgcactttgggagactgaggagaacggatcgcttgagcccaggagttcgagaccagcctgggcaatgtggtgaaaccctgtctctacaaaaaatgcaaaacaattagccaggcatggtggtgtcctgtggtcccagctacaagggaggctgaggtgggaggatcgcttgagcccaggaggtcaaggctgcagtaagctgtgatca-tgccactgcactccagcctgggaagcagagcaag i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2854817 654 + 4466143 gccaggcgt----ggtggctcacatctgtaatcctagcactttgggaggccgaggcgcatggatcacttgaagtcagaagttcaagaccagcctggtcaacatgtcaaaaccctgtctctactaaaaatacaaaaaaattagctgggcatggtggtgggcacctgtagtcccagctacttgggaggatgaagcaggagaattgcttgaacctgggaggtgaaatcttcagtgagctgagattgcgccactgtactccagtctgggaaacagagTTACAATCTcaaacaaacaaacaaacaaacaaacaaaAAAAT--GAGCTGATGAGCTTCTCTGTCTTTCAATTTTTTAATCTCCTGTTT-TAAAAAAATATAgtaaaattcacat-------------------aatggctgggcatggtggctcatacctgtatcgccgcactttgggagactgaggagaatggattgcttgagcccaggagttcgagaccagcctgggcaatgtggtgaaaccctgtctctacaaaaaatgcaaaacaattagccaggcgtggtggtgtcctctggtcccagctacaacggaggctgaggtgggaggatctcttgagcccaggaggtcaaggctgcagtaagctgtgatca-tgccactacactccagcctgggaagcagagcaag i cebCap1.NW_016107484v1 C 0 C 0 e micMur3.chr21 9456625 479 - 31815103 I e mm10.chr5 124801139 474 + 151834684 I e proCoq1.NW_012154285v1 6706168 487 - 9870158 I e dasNov3.JH568189 822017 373 - 1116856 I e canFam3.chr26 33144797 218 - 38964690 I e otoGar3.GL873618 4288225 50 + 7922563 I e aotNan1.NW_018491581v1 1562547 39 + 5364348 I a score=112615.000000 s hg38.chr12_KI270834v1_alt 50441 28 + 119498 accccatctc--aaaaaa-aat--------tcacataa-------------c s panTro5.chr12 127336473 28 + 137163284 accccatctc--aaaaaa-aat--------tcacataa-------------c i panTro5.chr12 C 0 C 0 s panPan2.chr12 125687325 28 + 135337776 accccatctc--aaaaaa-aat--------tcacataa-------------c i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8200696 29 - 8369578 accccatctc-aaaaaaa-aat--------tcacataa-------------c i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97848633 28 + 106955855 accccatctc--aaaaaa-aat--------tcccataa-------------c i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123973999 34 + 133663169 accctatctc-aaaaaat-aataat---aatcacataa-------------c i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128221378 34 + 137757926 accctatctc-aaaaaaT-AATAAT---AAtcacataa-------------c i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10621315 34 - 16319837 accctatctc-aaaaaat-aataat---aatcacataa-------------c i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12243799 35 + 20526591 accctatctcaaaaaaaa-aataat---aatcacataa-------------c i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119216467 36 + 128539186 accctatctcaaaaaaaaTAATAAT---AAtcacataa-------------c i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 536896 35 + 6255621 accctatctcaaaaaaaa-aaTAAT---AAtcacataa-------------c i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4592414 34 - 8658521 accctatctc-aaaaaaT-AATAAT---AAtcacataa-------------c i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114796003 20 + 124281992 accctgtctc--aaaaac-aaa-----------------------------c i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 440377 46 - 9212255 accctatctc--aaaaaa-aaaaaa---aacaaaacaaaaaaaaaacaaccc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2855471 36 + 4466143 accctatctc--aaaaac-aaa-------acaaaacaaaaa------acccc i cebCap1.NW_016107484v1 C 0 C 0 s canFam3.chr26 33145015 37 - 38964690 ATCTCTTCtt-taaaaat-tatggtacaattcacatag-------------t i canFam3.chr26 I 218 C 0 e micMur3.chr21 9456625 479 - 31815103 I e mm10.chr5 124801139 474 + 151834684 I e proCoq1.NW_012154285v1 6706168 487 - 9870158 I e dasNov3.JH568189 822017 373 - 1116856 I e otoGar3.GL873618 4288225 50 + 7922563 I e aotNan1.NW_018491581v1 1562547 39 + 5364348 I a score=3035162.000000 s hg38.chr12_KI270834v1_alt 50469 352 + 119498 acaaaattcgttattatagccattttaaagtatacaattcagtggcacttagtcc-attcaca--gcgttgtgcaaccatcagcaacgtctaaccccagaacattttcatcaccctggaaggaaacccacacacattagcacttactcccatcccacctctcattcccagg-aaccgtgactctaccttctgtctcca-tggagttttccatgttgggtatttcatataaatagagtcataaagcacgtggctttctgtgcctggcttgcttcactcctcatcatgttctcaagggtcatccgtgctggagcttgtgtctgtcagtgcttcattcctgg-----tttgttttattttgttt---t s panTro5.chr12 127336501 352 + 137163284 acaaaattcgttattatagccattttaaagtatacaattcagtggcatttagtcc-attcaca--gcgttgtgcaaccatcagcaccgtctaaccccagaacattttcatcaccctggaaggaaacccacacacattagcacttactcccatcccacctctcattcccagg-aaccgtgactctaccttctgtctcca-tggagttttccatgttgggtatttcatataaatagagtcataaagcacgtggctttctgtgcctggcttgcttcactcctcatcatgttctcaagggtcatccgtgctggagcttgtgtctgtcagtgcttcattcctgg-----tttgttttattttgttt---t i panTro5.chr12 C 0 C 0 s panPan2.chr12 125687353 352 + 135337776 acaaaattcgttattatagccattttaaagtatacaattcagtggcatttagtcc-attcaca--gcgttgtgcaaccatcagcaccgtctaaccccagaacattttcatcaccccggaaggaaacccacacacattagcacttactcccatcccacctctcattcccagg-aaccgtgactctaccttctgtctcca-tggagttttccatgttgggtatttcatataaatagagtcataaagcacgtggctttctgtgcctggcttgcttcactcctcatcatgttctcaagggtcatccgtgctggagcttgtgtctgtcagtgcttcattcctgg-----tttgttttattttgttt---t i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8200725 351 - 8369578 acagaattagttattatagccattttaaagtatacaattcagt-gcatttagtcc-agtcaca--gcgttgtgcaaccatcagcaccgtctaaccccagaacattttcatcaccctggaaggaaacccacacacattagcacttactcccatcccacctctcattcccagg-aaccatgactctaccttttgtctcca-tggagttttccatgttgggtatttcatataaatagagtcataaagcatgtggctttctgtgcctggcttgcttcactcctcatcatgttctcaagggtcatccgtgctggagcttgtgtctgtcagtgcttcattcctgg-----tttgttttattttgttt---t i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97848661 352 + 106955855 acaaaattcgttattatagccattttaaagtatacaattcagtggcatttagtcc-attcaca--gcgttgtgcaaccatcagcaccgtctaaccccagaacattttcatcaccccggaaggaaacccacacacattagcacttactcccatcccacctctcattcccagg-aaccatgaatctaccttttgtctcca-tggagttttctatgttgggtatttcacataaatagagtcataaggcacatggctttctgtgcctggcttgcttcactcctcatcatgttctcaagggtcatccgtgctggagcttgtgtctgtcagtgcttcattcctgg-----tttgttttgttttgttt---t i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123974033 355 + 133663169 acaaaattagttattatagtcattttaaagtatacaattcagtggcatttagtcc-attcaca--gtgtcgtgcaaccgtcagtaccgtctaactccagaacattttcatcaccccggaaggaaacccatacacattagcacttactcccatcccacctctcattcccagg-aaccatgaatctaccttttgtctcca-tggagttttccatgttgggtatttcatataaatagagtcataaagcacgtgactttctgtgcctggcttgcttcactccacatcatgttctcaagggtcatccgtgctggagtgtgtgtctgtcagtgcttcattcctgg-----tttgttttgttttgttttttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128221412 355 + 137757926 acaaaattagttattatagtcattttaaagtatacaattcagtggcatttagtcc-attcaca--gtgtcgtgcaaccgtcagtaccgtctaactccagaacattttcatcaccctggaaggaaacccatacacattagcacttactcccatcccacctctcattcccagg-aaccatgaatctaccttttgtctcca-tagagttttccatgttgggtatttcatgtaaatagagtcataaagcatgtgactttctgtgcctgacttgcttcactccacatcatgttctcaagggtcatccgtgctggagtgtgtgtctgtcagtgcttcattcctgg-----tttgttttgttttgttttttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10621349 355 - 16319837 acaaaattagttattatagtcattttaaagtatacaattcagtggcatttagtcc-attcaca--gtgtcgtgcaaccgtcagtaccatctaactccagaacattttcatcaccccggaaggaaacccatacacattagcacttactcccatcccacctctcattcccagg-aaccatgaatctaccttttgtctcca-tggagttttccatgttgggtatttcatataaatagagtcataaagcacgtgactttctgtgcctggcttgcttcactccacatcatgttctcaagggtcatccgtgctggagtgtgtgtctgtcagtgcttcattcctgg-----tttgttttgttttgttttttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12243834 356 + 20526591 acaaagttagttattatagtcattttaaagtatacaattcagtggcatttagtcc-attcaca--gtgttgtgcaaccgtcagtaccgtctaactccagaacattttcatcaccccagaaggaaacccctacgcattagcacttactcccatcccacctctcattcccagg-aaccatgagtctaccttttgtctccactggagttttccatgttgggtatttcatataaatagagtcataaagcacgtgactttctgtgcctggcttgcttcactccacatcatgttctcgagggtcatctgtgctggagtgtgtgtctgtcagtgcttcattcctgg-----tttgttttgttttgttttttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119216503 361 + 128539186 acaaaattagttattatagtcattttaaagtatacaattcagtggtatttagtcc-attcacagtgtgtcgtgcaaccgtcagtaccgtctaactccagaacattttcatcaccccagaaggaaacccatacgcgttagcacttactcccaccccacctctcattcccagg-aaccgtgaatctaccttttgtctca--tggagttttccatgtggggtatttcatataaatagagtcataaagcacgtgactttctgtgcctggcttgcttcactccacatcatgttctcgagggtcatccgtgctggagtgtgtgtctgtcagtgcttcattcctggtttgttttgttttgttttgttttgtt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 536931 352 + 6255621 acaa----agttattatagtcattttaaagtatacaattcagtggcatttagtcc-attcaca--gtgtcgtgcaaccgtcagtaccgtctaactccagaacattttcatcaccccagaaggaaacccctacgcattagcacttactcccatcccacctctcattcccagg-aaccatgaatctaccttttgtctccattggagttttccattttgggtatttcatataaatagagtcataaagcacgtgactttctgtgcctggcttgcttcactccacatcatgttctcgagggtcatctgtgctggagtgtgtgtctgtcagtgcttcattcctgg-----ttggttttgttttgttttttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4592448 355 - 8658521 acaaaattagttattatagtcattttaaagtatataattcagtggcatttagtcc-attcaca--gtgtcatgcaaccatcggtaccgtctaactccggaacattttcgtcaccccggaaggaaacccatacgcattagtacttactcccatcccacctctcattcccagg-aaccatgaatctaccttttgtctcca-tggagttttccatgttgggtatttcatgtaaatagagtcataaagcacgtgactttctgtgcctggcttgcttcactccacatcatgttctcgagggtcatccgtgctgcagtgtgtgtctgtcagtgcttcattcctgg-----tttgttttgttttgtttttgt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114796023 342 + 124281992 aaataattacttaccttagccattttaaagtatacaattcagtggcatttactgc-attcaca--gtgttgtgcaaccatcagcactgtctaacttcagg--attttcctggcccccgcaggacacccgtgctcattagcacttactcccatcccacctctcattcccagg-agcccggaaccttcgttttgtctctg-tggagttttctccgttgggcatttcatataaatagagtcataaagcacgtggctgtttgtgtcgggcttccttcactccgcatcatcatcttgagggtcatccatgctggagtgtg----agtaattgcttcctGACTGG--------GACTTTGTTGTTTT---- i calJac3.chr9 C 0 I 336 s saiBol1.JH378194 440423 342 - 9212255 acaaaattagttattttagccattttaaagtatacaattcggtggcatttacttc-attcaca--gtgttgtgcagccatcagcactgtctaactttaga--attttcctcaccccagcaggaaacccatgctcattagcagttactcccatcccacctctcattcccagg-aacctggaacctacctttcgtctcta-tggagttttctctgtcgggcatttcatataaatagtgtcataaagcgcgtggcttttggtgccgggcttccttcactctgcatcatcttctcgcgcgtcatccgtgctggagcggg----tggcagggcttcatgcctgg--------gttttgtttgtttg---- i saiBol1.JH378194 C 0 I 38 s cebCap1.NW_016107484v1 2855507 333 + 4466143 acaaaattagttattttagccattttaaagtatacacttcggtggcatttactgc-attcaca--gtgttgtgcagccatcagccctgtctaacttcaga--attctccttaccccagcaggaaatccgtgctccttagcacttactcccatcccacctctctttcccagg-aacctggagcctaccttttgtctcta-tggagctttctctttcgggcatttcat----atagagtcataaagtgcgtggctttttgtgctgggcttccttcactctgcgtcatcttctcgagggtcatccgtgctggagcgtg----tggcagtacttcatgcctgg--------gtttttttt--------- i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4288275 267 + 7922563 ataaaattgact-tagtaatgattttaaagtatatagttctatggcatttagccc-attcaca--atgttgtgcaaccctcaccaccattgacttctagaacattttcatccctctgaaaggaaatccatactccatagcagttactcccattttatcccttgtcccctggcaaccagtagtttacctcttgtctccg-tggatgcacctattctgggtttttcctatgaatggcatcata-----tgtggtcctttgtgtctggtttctt-------------------------tcactt--------------------------------------------------------------- i otoGar3.GL873618 I 50 C 0 s canFam3.chr26 33145052 315 - 38964690 gtagcattagttattttaaccaatttaaagttt---------tggcattgagtacgattccca--atgttgtacaaccattaccactacctaatttcaaaatatttttgttaccccaaaagcaatcacaatc-------------------tcccatccttcagcccttggcaattgctaatttgcattctacctttg-tagatttccctcttctggatatttcagacaaatggaatcatacagtatgtggtcttctatgactggcttctttc-tttagcatcacattttcaagattcatccat-tggtagtgtgtg--tgtcagtactttgctct--------ttttttttttttta------- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9456625 479 - 31815103 I e mm10.chr5 124801139 474 + 151834684 I e proCoq1.NW_012154285v1 6706168 487 - 9870158 I e dasNov3.JH568189 822017 373 - 1116856 I e aotNan1.NW_018491581v1 1562547 39 + 5364348 I a score=84753.000000 s hg38.chr12_KI270834v1_alt 50821 12 + 119498 gagatggagtct s panTro5.chr12 127336853 12 + 137163284 gagatggagtct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125687705 12 + 135337776 gagatggagtct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201076 12 - 8369578 gagatggagtct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849013 12 + 106955855 gagatggagtct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123974388 12 + 133663169 gagatggagtct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128221767 12 + 137757926 gagatggagtct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10621704 12 - 16319837 gagatggagtct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12244190 12 + 20526591 gagacggagtct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119216864 12 + 128539186 gagatggaatct i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 537283 12 + 6255621 gagacggagtct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4592803 12 - 8658521 gagacggagtct i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 440803 12 - 9212255 gagagggagtct i saiBol1.JH378194 I 38 C 0 s canFam3.chr26 33145367 12 - 38964690 aagattttatct i canFam3.chr26 C 0 I 136 e micMur3.chr21 9456625 479 - 31815103 I e mm10.chr5 124801139 474 + 151834684 I e proCoq1.NW_012154285v1 6706168 487 - 9870158 I e dasNov3.JH568189 822017 373 - 1116856 I e otoGar3.GL873618 4288542 0 + 7922563 C e aotNan1.NW_018491581v1 1562547 39 + 5364348 I e cebCap1.NW_016107484v1 2855840 0 + 4466143 C e calJac3.chr9 114796365 336 + 124281992 I a score=752448.000000 s hg38.chr12_KI270834v1_alt 50833 119 + 119498 ccctctgtcacccaggctggagtgcaatggcgtgatctcggttcactgcaacctccgcctcctgggttcaggcgattctcctgcctcagcctcctgagtagcaggaattacaggtgcgc s panTro5.chr12 127336865 119 + 137163284 ccctctgtcacccaggctggagtgcaatggcgcgatctcggttcactgcaacctccgcctcctgggttcaggcgattctcctgcctcagcctcctgagtagcaggaattacaggtgcgc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125687717 119 + 135337776 ccctctgtcacccaggctggagtgcaatggcgcgatctcggttcactgcaacctccgcctcctgggttcaggcgattctcctgcctcagcctcctgagtagcaggaattacaggtgcgc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201088 119 - 8369578 ccctctgtcacccaggctggagtgcaatggcgcgatctcggttcactgcaacctccgcctcctgggttcaggcgattctcctgcctcagcctcctgagtagcaggaattacaggtgcgc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849025 119 + 106955855 ccctctgtcacccaggctggagtgcaatggtgtgatcttggctcactgcaacctccgcctcctgggttcaggcgattctcctgcctcagcctcccaagtagcagggattacaggtgcgc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123974400 118 + 133663169 ccctctgtcacccaggctggagtgcaatggcatgatctcagctcactgcaacctctgcctcctgggttcaagagattctcctgcctcagcctcccaagtagct-ggattacaggtgcac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128221779 118 + 137757926 ccctctgtcacccaggctggagtgcaatggcatgatctcagctcactgcaacctctgcctcctgggttcaagagattctcctgcctcagcctcccaagtagct-ggattacaggtgcac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10621716 118 - 16319837 ccctctgtcacccaggctggagtgcaatggcatgatctcagctcactgcaacctctgcctcctgggttcaagagattctcctgcctcagcctcccaagtagct-ggattacaagtgcac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12244202 119 + 20526591 ccctctgtcacccaggctggagtgtaatggcatgatctcagctcactgcaacctctgcctcctgggttcaagagattctcctgcctcagcttcccaagtagctgggattacaggtgcac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119216876 118 + 128539186 ccctctgtcacccagactggagtgcaatggcatgatctcagctcactgcaacctctgccccctgggttcaagagattctcctgcctcagcctcccaagtagct-ggattacaggtgccc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 537295 119 + 6255621 ccctctgtcacccaggctggagtgtaatggcatgatctcagctcactgcaacctctgcctcctgggttcaagagattctcctgcctcagcttcccaagtagctgggattacaggtgcac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4592815 119 - 8658521 ccctctgtcacccaggctgaagtgcaatggcgtgatctcagctcactgcaacctctgcctcctgggttcaagagattctcctgcctcagcctcccaagtagctgggattacaggtgcat i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 440815 114 - 9212255 cactctgtcacccaggctggagtgcaatggtgcactc-----tcaccgcaaccccaacctcccgagttcaagcgattctgctgcctcagcctcctgagtagctaggattactggtgtgc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2855840 66 + 4466143 -----------------------------------------------------tccgcctcccgaattcaagcgattctgctgcttcagcctcctgagtcgctaggattacaggtgcgc i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4288542 21 + 7922563 -------------------------------------------------aactcatgttttcaaggttca------------------------------------------------- i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9456625 479 - 31815103 I e mm10.chr5 124801139 474 + 151834684 I e proCoq1.NW_012154285v1 6706168 487 - 9870158 I e dasNov3.JH568189 822017 373 - 1116856 I e canFam3.chr26 33145379 136 - 38964690 I e aotNan1.NW_018491581v1 1562547 39 + 5364348 I e calJac3.chr9 114796365 336 + 124281992 I a score=71490.000000 s hg38.chr12_KI270834v1_alt 50952 8 + 119498 accaccat s panTro5.chr12 127336984 8 + 137163284 accaccat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125687836 8 + 135337776 accaccat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201207 8 - 8369578 accaccat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849144 8 + 106955855 accaccat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123974518 8 + 133663169 accaccat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128221897 8 + 137757926 accaccat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10621834 8 - 16319837 accaccat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12244321 8 + 20526591 gccaccat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119216994 8 + 128539186 accaccac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 537414 8 + 6255621 gccaccat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4592934 8 - 8658521 gccaccat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114796701 8 + 124281992 Accaccac i calJac3.chr9 I 336 C 0 s saiBol1.JH378194 440929 8 - 9212255 accaccat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2855906 8 + 4466143 accaccac i cebCap1.NW_016107484v1 C 0 C 0 e micMur3.chr21 9456625 479 - 31815103 I e mm10.chr5 124801139 474 + 151834684 I e proCoq1.NW_012154285v1 6706168 487 - 9870158 I e dasNov3.JH568189 822017 373 - 1116856 I e canFam3.chr26 33145379 136 - 38964690 I e otoGar3.GL873618 4288563 0 + 7922563 C e aotNan1.NW_018491581v1 1562547 39 + 5364348 I a score=288695.000000 s hg38.chr12_KI270834v1_alt 50960 32 + 119498 gcccagctaatgtttatattttattttaatag s panTro5.chr12 127336992 32 + 137163284 gcccagctaatgtttatgttttattttaatag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125687844 32 + 135337776 gcccagctaatgtttatgttttattttaatag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201215 32 - 8369578 gcccagctaatgtttatattttattttaatag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849152 32 + 106955855 gcccagctaatgtttatattttattttaatag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123974526 32 + 133663169 gcccagctaatgtttgtattttattttagtag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128221905 32 + 137757926 gcccagctaatgtttgtattttattttagtag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10621842 32 - 16319837 gcccagctaatgtttgtattttattttagtag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12244329 28 + 20526591 gcccagctaatgtttgtat----ttttagtag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217002 32 + 128539186 gcccagctaatgtttgtattttattttagtag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 537422 28 + 6255621 gcccagctaatgtttttat----ttttagtag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4592942 28 - 8658521 acccagctaatgtttgtat----ttttagtag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114796709 32 + 124281992 gcccagctaatttttgtattttattttagtag i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 440937 32 - 9212255 gctcagctaatttttgtattttattttagtag i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2855914 32 + 4466143 gcccagctaatttttgtattttattttagtag i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1562586 32 + 5364348 gcccagctaatttttgtattttattttagtag i aotNan1.NW_018491581v1 I 39 C 0 s otoGar3.GL873618 4288563 14 + 7922563 ------------------ttgtactgtagcag i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9456625 479 - 31815103 I e mm10.chr5 124801139 474 + 151834684 I e proCoq1.NW_012154285v1 6706168 487 - 9870158 I e dasNov3.JH568189 822017 373 - 1116856 I e canFam3.chr26 33145379 136 - 38964690 I a score=945458.000000 s hg38.chr12_KI270834v1_alt 50992 96 + 119498 agat-ggggtttc-accgtgttggt------------------caggctggtcttcaactcctgacctcaggtgatctgcccaccttggcctcccaaagtgctgggattacaggca s panTro5.chr12 127337024 97 + 137163284 agatgggggtttc-accatgttggt------------------caggctggtcttgaactcctgatctcaggtgatctgcccaccttggcctcccaaagtgctgggattacaggca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125687876 97 + 135337776 agatgggggtttc-accatgttggt------------------caggctggtcttgaactcctgacctcaggtgatctgcccaccttggcctcccaaagtgctgggattacaggca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201247 96 - 8369578 agat-ggggtttc-accgtgttggt------------------caggctggtcttgaactcctgacctcaggtgatctgcccaccttggcctcccaaagtgctgggattacaggca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849184 114 + 106955855 agat-ggggtttc-accgtgttggtcaggctggtcttgaactccaggctggtcttgaactcctgacctcaggtgatctgcccaccttggcctcccaaagtgctgggattacaggcg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123974558 97 + 133663169 agac-agggtttctaccatgttggt------------------caggctggccttgaactcctgacttcaggtgatctgcccaccttggcctcccaaagtgctgggattacaggcg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128221937 97 + 137757926 agac-agggtttctaccatgttggt------------------caggctggccttgaactcctgacttcaggtgatctgcccaccttggcctcccaaagtgctgggattacaggcg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10621874 97 - 16319837 agac-agggtttctaccatgttggt------------------caggctggccttgaactcctgacttcaggtgatctgcccaccttggcctcccaaagtgctgggattataggcg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12244357 96 + 20526591 agac-agggtttc-accatgttggt------------------caggctggccttgaactcctgacttcaggtgatctgcccaccttggcctcccaaagtgctgggattacaggcg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217034 96 + 128539186 agac-agggtttc-accatgttgat------------------caggctggccttgaactcctgacctcaggtgatctgcccatcttggcctcccaaagtgctgggattacaggcg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 537450 96 + 6255621 agac-agggtttc-accatgttggt------------------caggctggccttgaactcctgacttcaggtgatctgctcaccttggcctcccaaagcgctgggattacaggcg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4592970 96 - 8658521 agac-aaggtttt-accatgttggt------------------caggctggccttgaactcctgacctcaggcgatctgcccatcttggcctcccaaagtgctgggattacgggcg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114796741 96 + 124281992 agat-ggggtttt-accatgttggt------------------caggctggtcttgaactcctgacctcagatgatctacccatcttggcctcccaaagtgctgggagtacagacg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 440969 96 - 9212255 agat-ggggtttt-accatgttggt------------------caggctggtcttgaactcctgacctcaggtgatccacccatcttggcctctcaaagtgctgggattacagatg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2855946 96 + 4466143 agat-ggggtttt-accatgttggt------------------caggctggtcttgaactcctgacctcacaggatccacccatcttggcctcccaaagtgctgggattacagatg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1562618 96 + 5364348 aggt-ggggtttt-accatgttggt------------------caggctggtcttgaactcctgacctcagatgatccacccatcttggcctcccaaagtgctaggattacagatg i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9456625 479 - 31815103 I e mm10.chr5 124801139 474 + 151834684 I e proCoq1.NW_012154285v1 6706168 487 - 9870158 I e dasNov3.JH568189 822017 373 - 1116856 I e canFam3.chr26 33145379 136 - 38964690 I e otoGar3.GL873618 4288577 0 + 7922563 C a score=169707.000000 s hg38.chr12_KI270834v1_alt 51088 20 + 119498 tgagccaccgtgactggcca s panTro5.chr12 127337121 20 + 137163284 tgagccaccgtgactggcca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125687973 20 + 135337776 tgagccaccgtgactggcca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201343 20 - 8369578 tgagccaccgtgactggcca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849298 20 + 106955855 tgagccactgtgcctagcca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123974655 20 + 133663169 taagccactgtgcctggtca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128222034 20 + 137757926 taagccactgtgcctggtca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10621971 20 - 16319837 taagccactgtgcctggtca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12244453 20 + 20526591 tgagccactgtgcctagtca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217130 20 + 128539186 tgagccactgtgcctggtca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 537546 20 + 6255621 tgagccactgtgcctagtca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4593066 20 - 8658521 tgagccactgtgcgtggtca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114796837 20 + 124281992 tgagccaccacacccggccA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441065 20 - 9212255 tgagccaccacatccgtcca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856042 20 + 4466143 tgagccaccacatccagcca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1562714 20 + 5364348 tgaaccactgcacccggccA i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33145515 20 - 38964690 tgagccaaccaggctgctca i canFam3.chr26 I 136 C 0 e micMur3.chr21 9456625 479 - 31815103 I e mm10.chr5 124801139 474 + 151834684 I e proCoq1.NW_012154285v1 6706168 487 - 9870158 I e dasNov3.JH568189 822017 373 - 1116856 I e otoGar3.GL873618 4288577 0 + 7922563 C a score=23101.000000 s hg38.chr12_KI270834v1_alt 51108 2 + 119498 ac s panTro5.chr12 127337141 2 + 137163284 ac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125687993 2 + 135337776 ac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201363 2 - 8369578 ac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849318 2 + 106955855 ac i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123974675 2 + 133663169 ac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128222054 2 + 137757926 ac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10621991 2 - 16319837 ac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12244473 2 + 20526591 ac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217150 2 + 128539186 ac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 537566 2 + 6255621 ac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4593086 2 - 8658521 gc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114796857 2 + 124281992 ac i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441085 2 - 9212255 ac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856062 2 + 4466143 ac i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1562734 2 + 5364348 ac i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33145535 2 - 38964690 gt i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 822390 2 - 1116856 ac i dasNov3.JH568189 I 373 C 0 e micMur3.chr21 9456625 479 - 31815103 I e mm10.chr5 124801139 474 + 151834684 I e proCoq1.NW_012154285v1 6706168 487 - 9870158 I e otoGar3.GL873618 4288577 0 + 7922563 C a score=1099403.000000 s hg38.chr12_KI270834v1_alt 51110 108 + 119498 ttcattcctttctatagcttagt-aatagtccattgtacggctc-tgccacattttgtttattcactcatctactgaaggacatttgtgtGT-T-GGGGGGGGTGTCTTTGC s panTro5.chr12 127337143 109 + 137163284 ttcattcctttctatagcttagt-aatattccattgtacggctc-tgccacattttgtttattcactcatctactgaaggacatttgtgtGT-TGGGGGGGGGTGTCTTTGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125687995 107 + 135337776 ttcattcctttctatagcttagt-aatattccattgtacggctc-tgccacattttgtttattcactcatctactgaaggacatttgtgtgt-t--gggggggtgtctttgc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201365 107 - 8369578 ttcattcctttctacagcttagt-aatattccattgtatggctc-tgccacattttgtttattcattcatctactgaaggacatttgtgtgt-t--gggggggtgtctttgc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849320 106 + 106955855 ttcattcctttctatagctcagt-aatattccattgtacggctc-tgccacattttgtttattcattcatctactgaaggacatttgtgtgt-t---gggggatgtctttgc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123974677 107 + 133663169 ttcattcctttctatagctcagt-aatattccattgtacggctc-tgccacattttgtttattcatccatctactgagggacatttgtctgt-t--gggggggtgtctttgc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128222056 107 + 137757926 ttcattcctttctatagctcagt-aatattccattgtacggctc-tgccacattttgtttattcatccatctactgagggacatttgtctgt-t--ggggggatgtctttgc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10621993 107 - 16319837 ttcattcctttctatagctcagt-aatattccattgtacggctc-tgccacattttgtttattcatccatctactgagggacatttgtctgt-t--gggggggtgtctttgc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12244475 107 + 20526591 ttcattcctttctatagctcagt-aatattccattgtacggctc-tgccacattttgtttattcatccatctactgaaggacatttgtctgt-t--gagggggtgtctttgc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217152 106 + 128539186 ttcattcctttctatagctcagt-aatattccattgtacggctc-tgccacattttgtttattcatccatctgctgaaggacatttgtctgt-t---ggggggtgtctttgc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 537568 107 + 6255621 ttcattcctttctatagctcagt-aatattccattgtacggctc-tgccacattttgtttattcatccatctactgaaggacatttgtctgt-t--gggggggtgtctttgc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4593088 108 - 8658521 ttcattcctttctatagctcagt-catattccattgtacggctc-tgccacgttttgtttattcatccatctactgaaggacatttgTCTGT-T-GGGGGGGGTGTCTTTGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114796859 101 + 124281992 ttcattccttttcacggctcagt-aatattccatcatacagctc-tgccacattttgtttatccatccatctactgaaggacatttgT-----G--GGGGGGGTCTC--TGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441087 103 - 9212255 tttattccttttcatggctcagt-aatattccatcgtacagctc-tgccacattttgtttattcatccatctactgaaggatatttgt-----t--gggggggtctctttgc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856064 103 + 4466143 tttattccttttcatggctcagt-aatattccatcgtacagctc-tgccacattttgtttattcatccatctactgaaggacatttgt-----g--ggggtggtctctttgc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1562736 108 + 5364348 tttattccttttcatggctcagt-aatattccattgtacagctc-tgccacattttgtttattcatccgtctactgaaggtcatttgtgtGTGG--GGGGGTGTCTCTTTGC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4288577 76 + 7922563 ------------tgtgactaagt---cattccgttgtgta--tg-tg------ttcatctattgattcatctattgaaggacatt--------t--ggggggatcttttc-- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124801613 84 + 151834684 ttcattacctttcctgatcaaat-actatttgatcataaaaaacgtaccatatgttgcctatccat---tctcctgatgggtcttttc------------------------ i mm10.chr5 I 474 C 0 s canFam3.chr26 33145539 97 - 38964690 tttgctctttgatagggtcaaataaacatgccactgtatggata-gatgaca-ttggtttatctgttcatccactgatagacatttgggtgt-t------------cttttc i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 822392 94 - 1116856 ttcactccttttggtggctgaat-aatattccattgtatggata-gaccacattgtgtctgt----ccatctattgatggacatt--------t--agaggactctcttc-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9456625 479 - 31815103 I e proCoq1.NW_012154285v1 6706168 487 - 9870158 I a score=33593.000000 s hg38.chr12_KI270834v1_alt 51218 2 + 119498 AT s panTro5.chr12 127337252 2 + 137163284 AT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688102 2 + 135337776 AT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201472 2 - 8369578 at i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849426 2 + 106955855 at i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123974784 2 + 133663169 AT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128222163 2 + 137757926 at i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622100 2 - 16319837 AT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12244582 2 + 20526591 AT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217258 2 + 128539186 AT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 537675 2 + 6255621 AT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4593196 2 - 8658521 AT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114796960 2 + 124281992 AT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441190 2 - 9212255 at i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856167 2 + 4466143 at i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1562844 2 + 5364348 AT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6706655 2 - 9870158 at i proCoq1.NW_012154285v1 I 487 C 0 s otoGar3.GL873618 4288653 2 + 7922563 ac i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124801697 2 + 151834684 at i mm10.chr5 C 0 I 6 s canFam3.chr26 33145636 2 - 38964690 at i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 822486 2 - 1116856 ac i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9456625 479 - 31815103 I a score=3666169.000000 s hg38.chr12_KI270834v1_alt 51220 198 + 119498 TTTTCAGACGTTTCATGAGAGCATTGTGGCTGTGAGTGGCAAGCTGACATTCTGCACGCTAGCACTTTACAAAAATATTGTGCAAGACCTACCTCCCACTCCGTCAAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCGGAGCGGTGAGTT-------TGATTTATCTT s panTro5.chr12 127337254 198 + 137163284 TTTTCAGACGTTTCATGAGAGCATTGTGGCTGTGAGTGGCAAGCTGACATTCTGCACGCTAGCACTTTACAAAAATATTGTGCAAGACCTACCTCCCACTCCGTCAAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCGGAGCGGTGAGTT-------TGATTTATCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688104 198 + 135337776 TTTTCAGACGTTTCATGAGAGCATTGTGGCTGTGAGTGGCAAGCTGACATTCTGCACGCTAGCACTTTACAAAAATATTGTGCAAGACCTACCTCCCACTCCGTCAAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCAGAGCGGTGAGTT-------TGATTTATCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201474 198 - 8369578 ttTTCAGACGTTTCATGAGAGCATTGTGGCTGTGAGTGGCAAGCTGACATTCTGCACGCTAGCACTTTACAAAAATATTGTGCAAGACCTACCTCCCACTCCGTCAAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCGGAGCGGTGAGTT-------TGATTTATCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849428 198 + 106955855 ttTTCAGACGTTTCATGAGAGCATTGTGGCTGTGAGTGGCAAGCTGACATTCTGCACGCTAGCACTTTACAAAAATATTGTGCAAGACCTACCTCCCACTCCATCAAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAATCCGGAGCGGTGAGTT-------TGGTTTATCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123974786 198 + 133663169 TTTTCAGACGTTTCATGAAAGCATTGTGGCTGTGAGTGGCAAGCTGACATTCTGCACGCTAGCACTTTACAAAATTATTGTGCAAGACCTACCTCCCACTCCGTCGAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCGGAGCGGTGAGTT-------TGGTTTATCTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128222165 198 + 137757926 ttTTCAGACGTTTCATGAAAGCATTGTGGCTGTGAGTGGCAAGCTGACATTCTGCACGCTAGCACTTTACAAAATTATTGTGCAAGACCTACCTCCCACTCCGTCGAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCGGAGCGGTGAGTT-------TGGTTTATCTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622102 198 - 16319837 TTTTCAGACGTTTCATGAAAGCATTGTGGCTGTGAGTGGCAAGCTAACATTCTGCACGCTAGCACTTTACAAAATTATTGTGCAAGACCTACCTCCCACTCCGTCGAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCGGAGCGGTGAGTT-------TGGTTTATCTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12244584 198 + 20526591 TTTTCAGACGTTTCATGAAAGCATTGTGGCTGTGAGTGGCAAGCTGACATTCTGCACGCTAGCACTTTACAAAATTATTGTGCAAGACCTACCTCCCACTCCGTCGAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCGGAGCGGTGAGTT-------TGGTTTATCTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217260 198 + 128539186 TTTTCAGACGTTTCATGAAAGCATTGTGGCTGTGAGTGGCAAGCTGACATTCTGCACGCTAGCACTTTACAAAATTATTGTGCAAGACCTTCCTCCCACTCCGTCGAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTTCTCACTAACCCTGAGCGGTGAGTT-------TGATTTATCTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 537677 198 + 6255621 TTTTCAGACGTTTCATGAAAGCATTGTGGCTGTGAGTGGCAAGCTGACATTCTGCACGCTAGCACTTTACAAAATTATTGTGCAAGACCTACCTCCCACTCCGTCGAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCGGAGCGGTGAGTT-------TGGTTTATCTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4593198 198 - 8658521 TTTTCAGACGTTTCATGAAAGCATTGTGGCTGTGAGTGGCAAGCTGACATTCTGCACGCTAGCACTTTACAAAATTATTGTGCAAGACCTACCTCCCACTCCGTCGAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCGGAGCGGTGAGTT-------TGGTTTATCTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114796962 198 + 124281992 TTTTCAGATGTTTCATGAGAGCATTGTGGCTGTGGGTGACAAGCTGACATCCTGCACGCTGGCACTTTACAAAAATATTGTGCAAGACCTACTTCCCACTCCCTCAAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCGGAGCGGTGAGTT-------GGGTTTACCTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441192 198 - 9212255 ttTTCAGACATTTCATGAGAGCATTGTGGCTGTGAGTGACAAGCTGACATCCTGCACGCTAGCACTTTACAAAAATATTGTGCAAGACCTACCTCCCACTCCGTCAAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCCGAGCGGTGAGTT-------GGGTTTATCTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856169 197 + 4466143 ttTTCAGACGTTTCATGAGAGCATTGTGGCTGTGAGTGACAAGCTGACATCCTGCACGCTAGCACTTTACAAAAATATTGTGCAAGACCTACCTCCCACTCCGTCAAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCTGATCGGTGAGTT--------GGTTTGTCTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1562846 198 + 5364348 TTTTCAGACATTTCATGAGAGCATTGTGGCTGTGAGTAACAAGCTGACATCCTGCACGCTAGCACTTTACAAAAATATTGTGCAAGACCTACCTCCCACTCCGTCAAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCGGAGCGGTGAGTT-------GGGTTTATCTT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9457104 198 - 31815103 tttttAGACATTTCACGAGAGCATCATGGCTGTGAGTGACAAGCTGACGTCCTGCACATTAACACTCTACGAAGACATCGTTCAGGACCTACCTCCCACTCCTTCCAAGTTCCATTACATCTTCAACCTGCGCGATCTCTCCCGGGTCTTTAATGGTCTTGTCCTCACTAACCCAGAGAGGTGAGTT-------TGGTTTCTCTT i micMur3.chr21 I 479 I 571 s proCoq1.NW_012154285v1 6706657 198 - 9870158 tttttAGACATTTCACGAGAGCGTTGTGGCCGTGAGTGACAAGCTGACGTTCTGCACGTTGGCACTCTACAGAAGTATCGTTCAGGACCTGCCTCCCACTCCATCGAAGTTCCATTACATCTTTAACCTTCGTGATCTCTCCCGAGTCTTTAACGGTCTTGTCCTCACTAACCCAGTGAGGTGAGTT-------TGGTTTCTCTT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4288656 198 + 7922563 ttttTAGACATTTCATGAGAACGTTGCAGCCTTGAGTGACCGGCTGACATTCTGCACGTTAGCACTTTACAAAAGTGTTATTCAGGACCTACCTCCTACACCTTCAAAGTTCCACTACATCTTTAACCTTCGAGATCTCTCTCGAGTTTTTAACGGTCTCGTCCTCACTAACCCAGAGAGGTGAGTT-------TGGTTTCTCTT i otoGar3.GL873618 I 1 C 0 s mm10.chr5 124801705 205 + 151834684 cTTTAAGACCTTTAACGAGAGCATCGGCGGCGTGAGCAGGAAGCTGACATTTTGCACATTAACACTTTACAAAAACATCGTTCAAGATCTGCCTCCCACCCCTTCCAAGTTCCATTACATCTTCAACCTCCGAGACCTCTCCAGGGTTTTTAATGGCCTTGTCCTTACTAATCCAGATCGGTGAGTTCGGGGGTTGGTTTGTTTG i mm10.chr5 I 6 C 0 s canFam3.chr26 33145638 198 - 38964690 ttttcaggtgttTCATGAAAGCATCATGGCTGTGAGTGACAAGCTGACCTTCTGCACATTGGCGCTTTACAAAACCATTGTGCAGGACCTGCATCCTACCCCATCTAAGTTCCACTACATCTTTAATCTTCGGGATCTCTCCAGAGTTTTTAATGGTCTTGTCCTCACTAATCCAGAACGGTGAGTT-------TGTTTTGTCTC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 822488 198 - 1116856 tttctaggtgttTCATGAAAGCATCATGGCTGTGACTGACAAATTGACAGATTGTACATTAGTACTTTACAAAAATATTGTTCAGGATCTGCCTCCAACCCCTTCAAAATTCCATTACATCTTTAACCTTCGAGATCTTTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCAGAGCGGTGAGTT-------GGCTTTGTCTG i dasNov3.JH568189 C 0 C 0 a score=1031894.000000 s hg38.chr12_KI270834v1_alt 51418 77 + 119498 ACTAAAATATGCCC-CACAGGT---ATGATAG-TTTTCTTATTCTTTTAAGACAGAGGGCTTATCAGTGGATTTGATGAATC s panTro5.chr12 127337452 77 + 137163284 ACTAAAATATGCCC-CACAGGT---ATGATAG-TTTTCTTATTCTTTTAAGACAGAGGGCTTATCAATGGATTTGATGAATC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688302 77 + 135337776 ACTAAAATATGCCC-CACAGGT---ATGATAG-TTTTCTTATTCTTTTAAGACAGAGGGCTTATCAATGGATTTGATGAATC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201672 77 - 8369578 ACTAAAATATGCCC-CACAGGT---ATGATAG-TTCTCTTATTCTTTTAAGACAGAGGGCTTATCAATGGATTTGATGAATC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849626 77 + 106955855 ACTAAAATATGCCC-CACAGGT---ATGATGG-TTTTCTTATCCTTTTAAGACAGAGGGCTTATCAATGGATTTGATGAATC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123974984 75 + 133663169 ACTAAAATATGCCC-CACAGGT---ATGATGG-TTTTCTTATTCTTTTAAGAC--AGGACTTATCGATGGATTTGATGAATC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128222363 77 + 137757926 ACTAAAATATGCCC-CACAGGT---ATGATGG-TTTTCTTATTCTTTTAAGACAGAGGACTTATCGATGGATTTGATGAATC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622300 77 - 16319837 ACTAAAATATGCCC-CACAGGT---ATGATGG-TTTTCTTATTCTTTTAAGACAGAGGACTTATCGATGGATTTGATGAATC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12244782 77 + 20526591 ACTAAAATATGCCC-CACAGCT---ATGATGG-TTTTCTTATTCTTTTAAGACAGAGGGCTTATCAATGGATTTGATGAATC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217458 77 + 128539186 ACTAAAATATGCCC-CACAGCT---ATGATGG-TTTTCTTATTCTTTTAAGACAGAGGGCTTATCGGTGGATTTGATGAATC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 537875 77 + 6255621 ACTAAAATATGCCC-CACAGGT---ATGATGG-TTTTCTTATTCTTTTAAGACAGAGGACTTATCGATGGATTTGATGAATC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4593396 77 - 8658521 CCTAAAATATGCCC-CACAGGG---ATGATGG-TTTTCTTATTCTTTTAAGACAGAGGGCTTATCGATGGATTTGATGAATC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797160 78 + 124281992 ACTAAAACACGCCC-CACAGGT---ATGATGGCTTTTCTTACTCTTTTAAGACAGAGGGCTTATCAGTGGATTGGGTGAATC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441390 78 - 9212255 ACTAAAACATGCCC-CAAGGGT---ATGATGGCTTTTTTTATTCTTTTAAGACAGAGGGCTTATCAATGGATTGGATGAATC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856366 78 + 4466143 ACTAAAACATGCCC-CACAGGT---ATGATGGCTTTTCTTATTCTTTTAAGACAGAGGGCTTATCAATGGATTGGATGAATC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563044 78 + 5364348 ACTAAAACACGCCC-CACAGGT---ATGATGGCTTTTCTTATTCTTTTAAGACAGAGGGCTTTTCAATGGATTGGATGAATT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6706855 78 - 9870158 ACTAAAACATTCGC-CGTAGGT---AGGACAATTTCTTTTATGCTTTTAAGACAGAGAACTTATCAATGATTTCGATGAATC i proCoq1.NW_012154285v1 C 0 I 169 s otoGar3.GL873618 4288854 77 + 7922563 ACTAAAATATCTGC-CATAGGT---ATGATGATTTCTTTTATTCTTTTATGACAGAGAACTTATCAATGATTCTGATGGTC- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124801910 63 + 151834684 ACTAAAATATACCCTTAAAGAC---GTGATGG-CCTTGTT---------------AGGACTTACCAACGAATCAGACGGCTC i mm10.chr5 C 0 I 4 s canFam3.chr26 33145836 81 - 38964690 ACTAACATGTGGCC-CATTGGTATCATGATGGTTTTTCCTATTCTTTTAAGACAGAGGACTTGTCAATTAATTTGATGAATC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 822686 57 - 1116856 GCTAAAATATACCC-C-TAAGT---ATTATGGTTTCTCTAATTCTTTTAAGACAGGCGACTT-------------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9457302 571 - 31815103 I a score=521191.000000 s hg38.chr12_KI270834v1_alt 51495 48 + 119498 GTTGTATGAATTAAT-TACCCAATGTC--TTTGCTTATGTT----GAA---GAAGAG--A s panTro5.chr12 127337529 48 + 137163284 ATTGTATGAATTAAT-TACCCAATGTC--TTTGCTTATGTT----GAA---GAAGAG--A i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688379 48 + 135337776 ATTGTATGAATTAAT-TACCCAATGTC--TTTGCTTATGTT----GAA---GAAGAG--A i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201749 48 - 8369578 ATTGTATGAATTAAT-TACCCAATGTC--TTTGCTTATGTT----GAA---GAAGAG--A i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849703 48 + 106955855 ATCGTATGAATTAAT-TGCCCAATGTC--TTTGCTTATGTT----GAA---GAAGAG--A i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975059 48 + 133663169 ATTGTATGAATTAAT-TACCCAATGTC--TTTGCTTATGTT----GAA---GAAGAG--A i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128222440 48 + 137757926 ATTGTATGAATTAAT-TACCCAATGTC--TTTGCTTATGTT----GAA---GAAGAG--A i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622377 48 - 16319837 ATTGTATGAATTAAT-TACCCAATGTC--TTTGCTTATGTT----GAA---GAAGAG--A i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12244859 48 + 20526591 ATTGTATGAATTAAT-TACCCAATGTC--TTTGCTTATGTT----GAA---GAAGAG--A i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217535 48 + 128539186 ATTGTATGAATTAAT-TACCCAATGTC--TTTGCTTATGTT----GAA---GAAGAG--A i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 537952 48 + 6255621 ATTGTATGAATTAAT-TACCCAATGTC--TTTGCTTATGTT----GAA---GAGGAG--A i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4593473 48 - 8658521 ATTGTATGAATTAAT-TACCCAATGTC--TTTGCTTATGTT----GAA---GAAGAG--A i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797238 52 + 124281992 ATTGTATGAATTGAT-GACGCAATGTC--TTTGCTTATGTTAAATGAA---GAGGCG--A i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441468 52 - 9212255 ATTGTATGAATTAAC-GACCCAATGTC--TTTGCTTATGTTAAATGAG---GAGGCA--A i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856444 52 + 4466143 ACTGTATGAATTAAG-GACCCAATGTC--TTTGCTTATGTTAAACGAA---GAGGCG--A i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563122 52 + 5364348 GTTGTATGAATTAAT-GAACCAATGTC--TTTGCTTATGTTAAATGAA---GAGGCG--A i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4288931 47 + 7922563 ----AGTGTATTAAT-TACCCAGTGTT--TTTGCTTATGTT----AAATATGAAAAT--A i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124801977 50 + 151834684 AATATGGCAGTGAGT-CACATGGACTC--CTTGATTATATT----AAT---TAAGAAACA i mm10.chr5 I 4 C 0 s canFam3.chr26 33145917 55 - 38964690 AGTGTATCAATGAATATACCCAATGTCTTTTTGTTTATGTTAAATGAA---GGAAAG--A i canFam3.chr26 C 0 I 478 s dasNov3.JH568189 822743 29 - 1116856 --------------------CTGTCTT--TTTATTTATATT----AAA---TGAGAA--G i dasNov3.JH568189 C 0 I 6 e micMur3.chr21 9457302 571 - 31815103 I e proCoq1.NW_012154285v1 6706933 169 - 9870158 I a score=155991.000000 s hg38.chr12_KI270834v1_alt 51543 13 + 119498 GACCAACACTTGG s panTro5.chr12 127337577 13 + 137163284 GACCAACACTTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688427 13 + 135337776 GACCAACACTTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201797 13 - 8369578 GACCAACGCTTGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849751 13 + 106955855 GACCAACGCTTGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975107 13 + 133663169 GACCAGTGCTTGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128222488 13 + 137757926 GACCAGTGCTTGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622425 13 - 16319837 GACCAGTGCTTGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12244907 13 + 20526591 GACCAGTGCTTGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217583 13 + 128539186 GACCAGTGCTTGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 538000 13 + 6255621 GACCAGTGCTTGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4593521 13 - 8658521 GACCAATGCTTGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797290 13 + 124281992 GACCAACGCTTGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441520 13 - 9212255 GATCAACGCTTGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856496 13 + 4466143 GACCAATGCTTGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563174 13 + 5364348 GACCAACGCTTGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4288978 13 + 7922563 GACAAATGCTTAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124802027 13 + 151834684 GATAAATGCTTAG i mm10.chr5 C 0 I 603 s dasNov3.JH568189 822778 13 - 1116856 GTTAAATGCTTTG i dasNov3.JH568189 I 6 C 0 e micMur3.chr21 9457302 571 - 31815103 I e proCoq1.NW_012154285v1 6706933 169 - 9870158 I e canFam3.chr26 33145972 478 - 38964690 I a score=61642.000000 s hg38.chr12_KI270834v1_alt 51556 5 + 119498 CTTAA s panTro5.chr12 127337590 5 + 137163284 CTTAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688440 5 + 135337776 CTTAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201810 5 - 8369578 CTTAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849764 5 + 106955855 CTTAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975120 5 + 133663169 CTTAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128222501 5 + 137757926 CTTAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622438 5 - 16319837 CTTAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12244920 5 + 20526591 CTTAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217596 5 + 128539186 CTTAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 538013 5 + 6255621 TTTAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4593534 5 - 8658521 CTTAA i colAng1.NW_012116043v1 C 0 I 302 s calJac3.chr9 114797303 5 + 124281992 CTTAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441533 5 - 9212255 CTTAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856509 5 + 4466143 CTTAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563187 5 + 5364348 CTTAA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4288991 5 + 7922563 CATAA i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 822791 5 - 1116856 CTTAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9457302 571 - 31815103 I e mm10.chr5 124802040 603 + 151834684 I e proCoq1.NW_012154285v1 6706933 169 - 9870158 I e canFam3.chr26 33145972 478 - 38964690 I a score=694477.000000 s hg38.chr12_KI270834v1_alt 51561 77 + 119498 GGCTTGAT-GCTTTGTAAGCCTTTGCATTG-AAACAGGCAAAACCAAGA------GAAGCAGAAGTGGGGA--------CA-------AGCCTATCACAC s panTro5.chr12 127337595 77 + 137163284 GGCTTGAT-GCTTTGTAAGCCTTTGCATTG-AAACAGGCAAAACCAAGA------GAAGCAGAAGTGGGGA--------CA-------AGCCTATCACAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688445 77 + 135337776 GGCTTGAT-GCTTTGTAAGCCTTTGCATTG-AAACAGGCAAAACCAAGA------GAAGCAGAAGTGGGGA--------CA-------AGCCTATCACAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201815 77 - 8369578 GGCTTGAT-GCTTTGTAAGCCTTTGAATTG-AAACAGGCAAAACCAAGA------GAAGCAGAAGTGGGGA--------CA-------AGCCTATCACAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849769 77 + 106955855 GGCTTGAT-GCTTTGTAAGCCTTTGAATTG-AAACAGGCAAAACCAAGA------GAAGCAGAAGTGTGGA--------CA-------AGCCTATCACAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975125 77 + 133663169 GGCTTGAT-GCTTTGTAAGCCTTTAAATTG-AAACAGGTAGAACCAAGA------GAAGCAGAAGTGTGGA--------CA-------GGCCTATCATAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128222506 77 + 137757926 GGCTTGAT-GCTTTGTAAGCCTTTGAATTG-AAACAGGTAGAACCAAGA------GAAGCAGAAGTGTGGA--------CA-------GGCCTATCATGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622443 77 - 16319837 GGCTTGAT-GCTTTGTAAGCCTTTGAATTG-AAACAGGTAGAACCAAGA------GAAGCAGAAGTGTGGA--------CA-------GGCCTATCATAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12244925 77 + 20526591 GGCTTGAT-GCTTTGTAAGTCTTTGAATTG-AAACAGGCAGAACCAAGA------GAAGCAGAAGTGTAGA--------CA-------GGCCTATCACAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217601 77 + 128539186 GGCTTGAT-GCTTTGTAAGCCTTTGAATTG-AAACAGGCAGAACCAAGA------GAAGCAGAAGTGTGGA--------CA-------GGCCTATCACAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 538018 77 + 6255621 GGCTTGAT-GCTTTGTAAGTCTTTGAATTG-AAACAGGCAGAAACAAGA------GAAGCAGAAGTGTAGA--------CA-------GGCCTATCACAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4593841 77 - 8658521 GGCTTGAT-GCTTTGTAAGCCTTTGAATTG-AAACAGGTAGAACCAAGA------GAAGCAGAAGTGTGGA--------CA-------GGCCTATCACAC i colAng1.NW_012116043v1 I 302 C 0 s calJac3.chr9 114797308 83 + 124281992 GGCTTGAT-GCTTTGTAAGCCACTGAGTTG-AAATGCGGGGAACAGGGAATGCAGAGAGCAGAATTGTGGG--------CA-------GGCGTGTCACAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441538 77 - 9212255 GGCTTCAT-GCTTTGTAAGCCACTGAGTTG-AAACCCCGGGAACCGAGA------GAAGCAGAATTGTGGG--------CA-------GGTGCGTCACAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856514 75 + 4466143 GGCTTGAT-GCTTTGTAAGCCACTCAGTTG-AAACACCTGGA--CGGGA------GAAGCAGAATTGTGGG--------CA-------GACGCGTCACAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563192 50 + 5364348 GGCTTGAT-GCTTTGTAAGCCAC----------------------------------AGCAGAATTGTGGG--------CA-------GGCGCATCACAC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4288996 77 + 7922563 GGCCTGAT-ACTTTGTTAG----TGGA----AGACAGGTGGAACTACGA------GCAGCAGAAATGTCCA--------CATGTGAACAGTGCATCAGAT i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 822796 87 - 1116856 GGCCTGATGGCTTTGTAAGCCCTTAGGTTGAAAATGGGTAGAATTAGGA------GCAGCAGATGTGTTGAAATCGAAGCA-------GGTATATCAAAC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9457302 571 - 31815103 I e mm10.chr5 124802040 603 + 151834684 I e proCoq1.NW_012154285v1 6706933 169 - 9870158 I e canFam3.chr26 33145972 478 - 38964690 I a score=156036.000000 s hg38.chr12_KI270834v1_alt 51638 17 + 119498 CCCTT---------------GGGCAGG--CTGTG s panTro5.chr12 127337672 17 + 137163284 CCCTT---------------GGGCAGG--CTGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688522 17 + 135337776 CCCTT---------------GGGCAGG--CTGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201892 17 - 8369578 CCCTT---------------GGGCAGG--CTGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849846 18 + 106955855 CCCTC---------------GGGCAGGA-CTGTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975202 18 + 133663169 CCCTT---------------GGGCAGGA-CTGTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128222583 18 + 137757926 CCCTT---------------GGGCAGGA-CTGTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622520 18 - 16319837 CCCTT---------------GGGCAGGA-CTGTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12245002 18 + 20526591 CCCTT---------------GGGCAGGA-CTGTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217678 18 + 128539186 CCCTT---------------GGGCAGGA-CTGTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 538095 18 + 6255621 CCCTT---------------GGGCAGGA-CTGTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4593918 18 - 8658521 CCCTT---------------GGGCAGGA-CTGTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797391 33 + 124281992 CCCTCACAGTCATCATCACAGGGTGGGA-CTGTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441615 18 - 9212255 CCCTC---------------GGGCAGGA-CTGTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856589 18 + 4466143 CCCTC---------------GGGCAGAA-CTGTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563242 18 + 5364348 CCCTC---------------GGGCAGGA-CTGTG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4289073 18 + 7922563 CCCAG---------------CAGAGACA-CTGAG i otoGar3.GL873618 C 0 I 8 s mm10.chr5 124802643 17 + 151834684 CCCTC---------------TGGTGGGA-TGGC- i mm10.chr5 I 603 C 0 s dasNov3.JH568189 822883 19 - 1116856 CTCTC---------------CAGTCGGACCTGCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9457302 571 - 31815103 I e proCoq1.NW_012154285v1 6706933 169 - 9870158 I e canFam3.chr26 33145972 478 - 38964690 I a score=600536.000000 s hg38.chr12_KI270834v1_alt 51655 44 + 119498 TTGTTGACTTCTCGTTTTCAGTTCTGAAGTTGGAATTTGCCTGC s panTro5.chr12 127337689 44 + 137163284 TTGTTGACTTCTCGTTTTCAGTTCTGAAGTTGGAATTTGCCTGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688539 44 + 135337776 TTGTTGACTTCTCGTTTTCAGTTCTGAAGTTGGAATTTGCCTGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201909 44 - 8369578 TTGTTGACTTCTCGTTTTTAGTTCTGAAGTTGGAATTTGCCTGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849864 44 + 106955855 TTGTTGACTTCTCGTTTTCAGTTCTGAAGTTGGAATTTTCCTGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975220 44 + 133663169 TTGCTGACTTCTCGTTTTCAGTTCTGAAGTTGGAATTTGCCTGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128222601 44 + 137757926 TTGCTGACTTCTCGTTTTCAGTTCTGAAGTTGGAATTTGCCTGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622538 44 - 16319837 TTGCTGACTTCTCGTTTTCAGTTCTGAAGTTGGAATTTGCCTGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12245020 44 + 20526591 TTGCTGACTTCTCGTTTTCAGTTCTGAAGTTGGAATTTGCCTGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217696 44 + 128539186 TTGCTGACTTCAAGTTTTCAGTTCTGAAGTGGGAATTTGCCTGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 538113 44 + 6255621 TTGCTGACTTCTCGTTTTCAGTTCTGAAGTTGGAATTTGCCTGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4593936 44 - 8658521 TTGCTGACCTCTCGTTTTCAGTTCTGAAGTTGAAATTTGCCTGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797424 44 + 124281992 TTGTTGACATCTCGTTTTCAGTTCTGAAGTTGGAATTTGCCTGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441633 44 - 9212255 TTGTTGACTTCTCGTTTTCAGTTCTGAAGTTGGAATTTGCCTGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856607 44 + 4466143 TTGTTGACTTCCCGTTTGCAGTTCTGAAGTTGGAATTTGCCTGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563260 44 + 5364348 TTGTTGACTTCTCGTTTTCAGTTCTGAAGTTGGAATTTGCCTGC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6707102 44 - 9870158 TTGCTGACCTCTCGTTTTCAGTTCTGAAGTTGGAGTTTTCCTGC i proCoq1.NW_012154285v1 I 169 C 0 s otoGar3.GL873618 4289099 44 + 7922563 TTGTTGACCTCTGATTTTCACTTCTGAACTTGGGGTTTCCCTGC i otoGar3.GL873618 I 8 C 0 s mm10.chr5 124802660 36 + 151834684 TCTGTAGCCTCACCTGCTCAGCTC--AGGCTGGG------CTGT i mm10.chr5 C 0 C 0 s dasNov3.JH568189 822902 42 - 1116856 TTGTGGACTTCTCATTT--AGTTCCAATGTGAGAATTTTCCTGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9457302 571 - 31815103 I e canFam3.chr26 33145972 478 - 38964690 I a score=162735.000000 s hg38.chr12_KI270834v1_alt 51699 11 + 119498 ATGGAG---CCTTT s panTro5.chr12 127337733 11 + 137163284 ATGGAG---CCTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688583 11 + 135337776 ATGGAG---CCTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201953 11 - 8369578 ATGGAG---CCTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849908 11 + 106955855 ATGGAG---CCTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975264 11 + 133663169 CTGGAG---CCTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128222645 11 + 137757926 CTGGAG---CCTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622582 11 - 16319837 CTGGAG---CCTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12245064 11 + 20526591 CTGGAG---CCTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217740 11 + 128539186 CTGGAG---CCTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 538157 11 + 6255621 CTGGAG---CCTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4593980 11 - 8658521 CTGGAG---CCTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797468 11 + 124281992 GTAGAG---CCTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441677 10 - 9212255 ATGGA----CCTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856651 11 + 4466143 ATGGAG---CCTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563304 11 + 5364348 ATGGAG---CCTTT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6707146 11 - 9870158 CTGGAG---CCTTT i proCoq1.NW_012154285v1 C 0 I 35 s otoGar3.GL873618 4289143 11 + 7922563 ATGGAG---TCTTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124802696 11 + 151834684 GTGGAG---CCTGT i mm10.chr5 C 0 C 0 s canFam3.chr26 33146450 14 - 38964690 aTGAAGTTACCTTT i canFam3.chr26 I 478 C 0 s dasNov3.JH568189 822944 11 - 1116856 GTGGAG---CCTTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9457302 571 - 31815103 I a score=385871.000000 s hg38.chr12_KI270834v1_alt 51710 36 + 119498 TGCTCACATAACTC-AGTC-------G-------TTGCCGGTTGGTTATAG s panTro5.chr12 127337744 36 + 137163284 TGCTCACATAACTC-AGTC-------G-------TTGCCGGTTGGTTATAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688594 36 + 135337776 TGCTCACATAACTC-AGTC-------G-------TTGTCGGTTGGTTATAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8201964 36 - 8369578 TGCTCACATAACTC-AGTC-------G-------TTGCCGGTTGGTTATAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849919 36 + 106955855 TGCTCACGTAACTC-AATT-------G-------TTGCCAGTTGGTTATAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975275 36 + 133663169 TGCTCACATAACTC-AGTC-------G-------TTGCTGGTTGGTTATAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128222656 36 + 137757926 TGCTCACATAACTC-AGTC-------G-------TTGCTGGTTGGTTATAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622593 36 - 16319837 TGCTCACATAACTC-AGTC-------G-------TTGCTGGTTGGTTATAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12245075 36 + 20526591 TGCTCACATAACTC-AGTC-------C-------TTGCTGGTTGGTTATAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217751 36 + 128539186 TGCTCACATAACTC-AGTC-------C-------TTGCTGGTTGGTTATAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 538168 36 + 6255621 TGCTCACATAACTC-AGTC-------G-------TTGCTGGTTGGTTATAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4593991 36 - 8658521 TGCTCACATAACTC-AGTG-------C-------TTGCTGGTTGGTTATAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797479 36 + 124281992 TGCTCAGGTAACTC-AATC-------A-------TTGCCGGTCCATTACAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441687 36 - 9212255 TGCTCATGTAACTC-AATC-------A-------TTGCCGGTTCATTATAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856662 37 + 4466143 TGCTCACATAACTCAAATC-------G-------TTGCCGGTTCATTATAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563315 36 + 5364348 TGCTCACGTAACTC-AATC-------G-------TTGCCGGTTCATTATAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4289154 32 + 7922563 ----CATGCAACTG-CATC-------G-------TTTCCAGTTGCTAGTCA i otoGar3.GL873618 C 0 I 2 s mm10.chr5 124802707 36 + 151834684 GGCTTATTTGATAC-AGTA-------T-------TTCCTGCTCAGTGGAAG i mm10.chr5 C 0 C 0 s canFam3.chr26 33146464 43 - 38964690 TGCTCAGGCAACTG-AATTGTTAGCAG-------TTGCTAATTGGTTATAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 822955 43 - 1116856 CATTCATACAACAG-AATT-------GTTTCCACTTGCCAGTTGGTTATAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9457302 571 - 31815103 I e proCoq1.NW_012154285v1 6707157 35 - 9870158 I a score=683579.000000 s hg38.chr12_KI270834v1_alt 51746 49 + 119498 GATGTGTGTCTTTATGAGAAGTAAGCA--GAGGACAG----AAAGGATTTAAGTC s panTro5.chr12 127337780 49 + 137163284 GATGTGTGTCTTTATGAGAAGTAAGCA--GAGGACAG----AAAGGATTTAAGTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688630 49 + 135337776 GATGTGTGTCTTTATGAGAAGTAAGCA--GAGGACAG----AAAGGATTTAAGTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202000 49 - 8369578 GATGTGTGTCTTTATGAGAAGTAAGCA--GAAGACAG----AAAGGATTTAAGTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97849955 49 + 106955855 GATGTGTGTCTTTATGAGAAGTAAGCA--GAGGACAG----AAAAGATTTAAGTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975311 49 + 133663169 GATGTGTGTCTTTGTGAGAAGTAAACA--GAGGACAG----AAAGGATTTAAGTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128222692 49 + 137757926 GATGTGTGTCTTTGTGAGAAGTAAACA--GAGGACAG----AAAGGATTTAAGTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622629 49 - 16319837 GATGTGTGTCTTTGTGAGAAGTAAACA--GAGGACAG----AAAGGATTTAAGTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12245111 49 + 20526591 GATGTGTGTCTTTGTGAGAAGTAAACA--GAGGACAG----AAAGGATTTAAGTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217787 49 + 128539186 GATGTGTGTCTTTGTGAGAAATAAGTA--GAGCACAG----AAAGGATTTAAGTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 538204 49 + 6255621 GATGTGTGTCTTTGTGAGAAGTAAACA--GAGGACAG----AAAGGATTTAAGTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594027 49 - 8658521 GATGTGTGTCTTTGTGAGAAGTAAGCA--GAGGACAG----AAAGGATTTAAGTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797515 49 + 124281992 AATGTATGTCTTCAGGAGAAGTAAGCA--GAGGACAG----AAAGGATTTAAGTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441723 49 - 9212255 AATGTATGTCTTCAGGAGAAGTAAGCA--GAGGACAG----AAAGGATTTAAGTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856699 49 + 4466143 AATGTATGTCTTCAGGAGAAGTAAGTG--GAGGACAG----AAAGGATTTGAGTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563351 49 + 5364348 AATGTATGTCTTCAGGAGAAGTAAGCA--GAGGACAG----AAAGGATTTAAGTC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6707192 49 - 9870158 GATGTGTGTCCTTAGGAGAAGTAAATG--GAGAACAG----AAAGGATTTAAGTC i proCoq1.NW_012154285v1 I 35 I 247 s otoGar3.GL873618 4289188 47 + 7922563 TATGTGTGT-CTTAGGAGAAGT-ATCA--GAAAACAG----GAAGGATTTACGTC i otoGar3.GL873618 I 2 C 0 s mm10.chr5 124802743 44 + 151834684 -----GTGTCTTC---AGGAGTTACCA--GAG-ACAGCCCAGAATGAATGAGGAC i mm10.chr5 C 0 C 0 s canFam3.chr26 33146507 50 - 38964690 TATGTGTGTCTGTAGGAGAAGTAAACACGGAGGATA-----AAAGGATTTAAATC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 822998 49 - 1116856 --TGTGTGTCTTTAGAAGACATAAGCACAGAGAACAA----AAAGGAATCAAGCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9457302 571 - 31815103 I a score=203174.000000 s hg38.chr12_KI270834v1_alt 51795 23 + 119498 ACGATATAGGGAAATTCCCGATT s panTro5.chr12 127337829 23 + 137163284 ATGATATAGGGAAATTCCCGATT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688679 23 + 135337776 ATGATATAGGGAAATTCCCGATT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202049 23 - 8369578 ACGATATAGGGAAATTCCCGATT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850004 23 + 106955855 ACGATATAGGGAAATTTCCGATT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975360 23 + 133663169 ATGGTATAAGGAAATTCCCCATT i rheMac8.chr11 C 0 I 325 s macFas5.chr11 128222741 23 + 137757926 ATGGTATAAGGAAATTCCCCATT i macFas5.chr11 C 0 I 323 s macNem1.NW_012010578v1 10622678 23 - 16319837 ATGGTATAAGGAAATTCCCCATT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12245160 23 + 20526591 ATGGTATAAGGAAATTCCCCATT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217836 23 + 128539186 ACGGTATAGGGAAATTCCCCATT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 538253 23 + 6255621 ATGGTATAAGGAAATTCCCCATT i manLeu1.NW_012103587v1 C 0 I 9296 s colAng1.NW_012116043v1 4594076 23 - 8658521 ACGGTATAGGGAAATTCCCCATT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797564 23 + 124281992 TGGATATAGGCAAATCCCCCATG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441772 23 - 9212255 TGGGTATAGGCAAATTCCCCATT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856748 23 + 4466143 TGGGTATAGGCAAATTCCCCATT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563400 23 + 5364348 TGGGTATAGGCAAATTCCCCATT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4289235 22 + 7922563 TGGGTAT-GGAAAATTTCCCACT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124802787 22 + 151834684 TCTCTATAAAAACAGCCTCGTG- i mm10.chr5 C 0 C 0 s canFam3.chr26 33146557 21 - 38964690 TAGGTATAG--AAATTTTCTTTT i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 823047 21 - 1116856 TGGGTATAG--AATTTTCTCCTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9457302 571 - 31815103 I e proCoq1.NW_012154285v1 6707241 247 - 9870158 I a score=47375.000000 s hg38.chr12_KI270834v1_alt 51818 3 + 119498 AAA s panTro5.chr12 127337852 3 + 137163284 AAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688702 3 + 135337776 AAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202072 3 - 8369578 AAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850027 3 + 106955855 AAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975708 3 + 133663169 aaa i rheMac8.chr11 I 325 C 0 s macFas5.chr11 128223087 3 + 137757926 aaa i macFas5.chr11 I 323 C 0 s macNem1.NW_012010578v1 10622701 3 - 16319837 AAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12245183 3 + 20526591 AAA i cerAty1.NW_012001186v1 C 0 I 318 s chlSab2.chr11 119217859 3 + 128539186 AAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 547572 3 + 6255621 aaa i manLeu1.NW_012103587v1 I 9296 C 0 s colAng1.NW_012116043v1 4594099 3 - 8658521 AAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797587 3 + 124281992 AAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441795 3 - 9212255 AAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856771 3 + 4466143 AAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563423 3 + 5364348 AAA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4289257 3 + 7922563 AAA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124802809 2 + 151834684 -AA i mm10.chr5 C 0 I 1 s canFam3.chr26 33146579 3 - 38964690 GAA i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 823068 3 - 1116856 AAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9457302 571 - 31815103 I e proCoq1.NW_012154285v1 6707241 247 - 9870158 I a score=83277.000000 s hg38.chr12_KI270834v1_alt 51821 5 + 119498 ACTAG s panTro5.chr12 127337855 5 + 137163284 ACTAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688705 5 + 135337776 ACTAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202075 5 - 8369578 ACTAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850030 5 + 106955855 ACTAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975711 5 + 133663169 aCTAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223090 5 + 137757926 aCTAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622704 5 - 16319837 ACTAG i macNem1.NW_012010578v1 C 0 M 25 s cerAty1.NW_012001186v1 12245504 5 + 20526591 ACTAG i cerAty1.NW_012001186v1 I 318 C 0 s chlSab2.chr11 119217862 5 + 128539186 ACTAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 547575 5 + 6255621 aCTAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594102 5 - 8658521 ACTAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797590 5 + 124281992 ACTAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441798 5 - 9212255 ACTAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856774 5 + 4466143 ACTAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563426 5 + 5364348 ACTAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4289260 5 + 7922563 ACTAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124802812 5 + 151834684 AGCAG i mm10.chr5 I 1 I 2 s canFam3.chr26 33146582 5 - 38964690 ACTAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 823071 5 - 1116856 ACTAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9457302 571 - 31815103 I e proCoq1.NW_012154285v1 6707241 247 - 9870158 I a score=996378.000000 s hg38.chr12_KI270834v1_alt 51826 91 + 119498 GCTTATACCTTTACATGAATGTC------TACTTTAGTCTATGTGGATTTGCAAGCATAGTCCAATTATGTGGATTCATATTATGAATCCAGAAGAT s panTro5.chr12 127337860 91 + 137163284 GCTTATACCTTTACATGAATGTC------TACTTTAATCTATGTGGATTTGCAAGCATAGTCCAATTATGTGGATTCATATTATGAATCCAGAAGAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688710 91 + 135337776 GCTTATACCTTTACATGAATGTC------TACTTTAATCTATGTGGATTTGCAAGCATAGTCCAATTATGTGGATTCATATTATGAATCCAGAAGAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202080 91 - 8369578 GCTTATACCTTTACATGAATGTC------TACTTTAGTCTATGTGGATTTGCAAGCATAGTCCAATTATGTGGATTCATATTATGAATCCAGAAGAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850035 91 + 106955855 GCTTATACCTTCACACGAACGTC------TACTTTAGCCTATGTGGATTCGCAAGCATAGTCCAATTATGTGGATTCATATTACGAATCCAGAAGAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975716 91 + 133663169 GCTTATACCTTCACGTGAATGTC------TACTTTAGTCTGTGTGGATTTGCAAGCATAGTCCAGTTATGTGGATTCATATTATGAATCCAGAAGAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223095 91 + 137757926 GCTTATACCTTCACGTGAATGTC------TACTTTAGTCTGTGTGGATTTGCAAGCATAGTCCAGTTATGTGGATTCATATTATGAATCCAGAAGAT i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12245509 91 + 20526591 GCTTATACCTTCACATGAGTATC------TACTTTAGTCTGTGTGGATTTGCAAGCATAGTCCAGTTATGTGGATTCATATTATGAATCCAGAAGAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217867 91 + 128539186 GCTTATACCTTCACATGAATGTC------TACTTTAGTCTGTGTGGATTTGCAAGCATAGTCCAGTTATGTGGATTCATATTATGAATCCAGAAGAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 547580 91 + 6255621 GCTTATACCTTCACATGAATATC------TACTTTAGTCTGTGTGGATTTGCAAGCATAGTCCAGTTATGTGGATTCATATTATGAATCCAGAAGAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594107 91 - 8658521 GCTTATACCTTCACGTGAATGTC------TACTTTAGTCTGTGTGGATTTGCAAGCATAGTCCAGTTATGTGGATTCATATTATGAATCCAGAAGAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797595 91 + 124281992 ACTTACACCTTCACATAAATGTC------TACTTCATTCTATGTGGATTTGCAAGCATAGTCCAATTAAGTGGATTTAGATTATGAATCTGGAAGAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441803 91 - 9212255 ACTTATGCCTTCACATGAATGTC------TACTTCATTCTATGTGAATTTGCAAGCATAGTCCAATTGTGTGGATTTATATTATGAATCCGGAAGAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856779 91 + 4466143 ACTTATACCTTCACATAAATGTC------TACTTCATTCTATGCGGATTTGCAAGCATAGTCCAGTTATGTGGATTTATATTATGAACCTGGAAGAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563431 91 + 5364348 ACTTATACCTTCACATAAATGTC------TACTTTATTCTATGTGGATTTGCAAGCATAGTCCAATGATATGGATTTATATTATGAATCCAGAAGAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4289265 91 + 7922563 ACTTACATTTTCAAATGAATGTC------TACTTTAGGCTATGTAGATTTGCAAACAGAATCCAATTATGTGGATTCATGTTAGGAGTCAGTGAAAT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124802819 74 + 151834684 TCCCACACTTCCCC-----TGCC------CCTTTCAGTCTCTGT-------CAAGC-----CCAACTGTGTGGATTTGTGCCAGGAACCTTGAAGAT i mm10.chr5 I 2 I 151 s canFam3.chr26 33146587 77 - 38964690 GCTTATGTATTTACGTTAATG------------------TATATAGATTTTCAAGCATAGTCCGATTTTGTGGATTCATATT--GAGTCCACAAAAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 823076 97 - 1116856 ACTCATTTATTTACATTAGTTATACATAATAGTTTAATATATGTAGATTTGCAAGTGTAGTAGGATTATGTATCTTCAAAATATGAATCAACAAAAC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9457302 571 - 31815103 I e proCoq1.NW_012154285v1 6707241 247 - 9870158 I e macNem1.NW_012010578v1 10622709 25 - 16319837 M a score=725667.000000 s hg38.chr12_KI270834v1_alt 51917 83 + 119498 ACTG-AAAAATGAA----TTGAGAATTTTCCATGTATCC-------TGCTTTTGAGT---GCCTTGAAA-CATACAGACTGTCAGGGGCGGTCAGGAGA s panTro5.chr12 127337951 83 + 137163284 ACTG-AAAAATGAA----TTGAGAATTTTCCATGTATCC-------TGCTTTTGAGT---GCCTTGAAA-CATATAGACTGTCAGGGGCGGTCAGGAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688801 83 + 135337776 ACTG-AAAAATGAA----TTGAGAATTTTCCATGTATCC-------TGCTTTTGAGT---GCCTTGAAA-CATATAGACTGTCAGGGGCGGTCAGGAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202171 83 - 8369578 ACTG-AAAAATGAA----TTGAGAATTTTCCATGTATCC-------TGCTTTTGAGT---GCCTTGAAA-CATATAGACTGTCAGGGGCGGTCAGGAGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850126 83 + 106955855 ACTG-AAAAATGAA----TTGAGAATTTTCCATGTATCC-------TGTTTTTGAGT---GCCTTGAAA-CATACAGAATGTCAGGGGCGGTCAGGAGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975807 83 + 133663169 ACTG-AAGAATGAG----TTGAGAATTTTGCATGTATCC-------TGCTCTTTGGT---GCCTTGAAA-CATGTAGAATGTCAGGGGCGGTCAGGAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223186 83 + 137757926 ACTG-AAGAATGAG----TTGAGAATTTTGCATGTATCC-------TGCTCTTTGGT---GCCTTGAAA-CATGTAGAATGTCAGGGGCGGTCAGGAGA i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12245600 83 + 20526591 ACTG-AAGAATGAG----TTGAGAATTTTGCATGTATCC-------TGCTCTTTGGT---GCCTTGAAA-CATGTAGAATGTCAGGGGCGGTCAGGAGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119217958 83 + 128539186 ACTG-AAGAATGAG----TTGAGAATTTTTCATGTATCC-------TGCTCTTTGAT---GCCTTGAAA-CATGTAGAATGTCAGAGGTGGCCAGGAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 547671 83 + 6255621 ACTG-AAGAATGAG----TTGAGAATTTTGCATGTATCC-------TGCTCTTTGGT---GCCTTGAAA-CATGTAGAATGTCAGGGGCGGTCAGGAGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594198 83 - 8658521 ACTG-AAGAATGAG----TTGAGAATGTTTCATGTATCC-------TGCTCTTTGGT---GCCTTGAAA-CCTGTAGAATGTCAGGGGCGGTCAGGAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797686 71 + 124281992 AC-----------------TGAGAACTTTCCATGTATCC-------TGCTCTTGGGT---GCCTTGAAA-CGTGTAGAATGTCAGGGGGGGTCAGCAGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441894 83 - 9212255 ACTG-AAAAATGAG----TTGAGAACTTTCCATGTATCC-------TGCTCTTGGGT---GCCTTGAAA-CGTGTAGAATGTCAGGGGTGGTCAGCAGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856870 83 + 4466143 ACTG-AAAAATGAA----TTGAGAACTTTCCATGTATCC-------TGCTCTTAGGT---GCCTTGAAA-CGTGTAGAGTGTCAGGGGTGGTCAGCAGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563522 82 + 5364348 ACTG-AAAAATGAA----TTGAGAACTTTCCATATATCC-------TGCTCTTGGGT---ACCTTGAAA-CGTGTAGAATGTC-GGGGTGGTCAGCAGA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4289356 87 + 7922563 ACTG-AAAACTGAA----TTCAGGTCTTTCTGTGAACCCAAACT--TGCTCTTTGCTCTGCCCATGAGATTGTGCAGAATGTCA-----GTCCAGGAGA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33146664 88 - 38964690 ATTG-AAAAGTGAATTAGTTGATGGCTTTTCATATACCCAAACT--TATTTTCAGATC--TCCATGAAG-GGTTTGGAATGACA-----GTTTAGGAGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 823173 85 - 1116856 ATTGAAAAAATGAA----TTGAGAACTTTCCAGGTACCTAAACTTATACTCAAGAGC---CCCTAGATG-GGTTTGGG-TAACA-----GTTAAGTAGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9457302 571 - 31815103 I e mm10.chr5 124802893 151 + 151834684 I e proCoq1.NW_012154285v1 6707241 247 - 9870158 I e macNem1.NW_012010578v1 10622709 25 - 16319837 M a score=192196.000000 s hg38.chr12_KI270834v1_alt 52000 13 + 119498 GGGCAGCTCCAGG s panTro5.chr12 127338034 13 + 137163284 GGGCAGCTCCAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688884 13 + 135337776 GGGCAGCTCCAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202254 13 - 8369578 GGGCAGCTCCAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850209 13 + 106955855 GGGCAGCTCCAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975890 13 + 133663169 GGGCAGCTCCAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223269 13 + 137757926 GGGCAGCTCCAGG i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12245683 13 + 20526591 GGGCAGCTCCAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218041 13 + 128539186 GGGCAGCTCCAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 547754 13 + 6255621 GGGCAGCTCCAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594281 13 - 8658521 GGGCAGCTCCAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797757 13 + 124281992 GGGCAGCTCCAGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441977 13 - 9212255 GGGCAGCTCCAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856953 13 + 4466143 GGGCAGCTCCAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563604 13 + 5364348 GGGCAGTTCCAGG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9457873 13 - 31815103 GGGCAGCCCCAGG i micMur3.chr21 I 571 C 0 s otoGar3.GL873618 4289443 13 + 7922563 GAAGAGCTCCAGG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33146752 13 - 38964690 AGACAGCTCCAGT i canFam3.chr26 C 0 I 6 s dasNov3.JH568189 823258 13 - 1116856 GGGCAGCTACAGG i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124802893 151 + 151834684 I e proCoq1.NW_012154285v1 6707241 247 - 9870158 I e macNem1.NW_012010578v1 10622709 25 - 16319837 M a score=76310.000000 s hg38.chr12_KI270834v1_alt 52013 7 + 119498 TGTTTCA s panTro5.chr12 127338047 7 + 137163284 TGTTTCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688897 7 + 135337776 TGTTTCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202267 7 - 8369578 TGTTTCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850222 7 + 106955855 TGTTTCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975903 7 + 133663169 TGTTTCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223282 7 + 137757926 TGTTTCA i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12245696 7 + 20526591 TGTTTCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218054 7 + 128539186 TGTTTCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 547767 7 + 6255621 TGTTTCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594294 7 - 8658521 TGTTTCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797770 7 + 124281992 TGTTTTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441990 7 - 9212255 TGTTTTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856966 7 + 4466143 TGTTTTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563617 7 + 5364348 TGTTTTG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9457886 7 - 31815103 TGTTTTG i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4289456 7 + 7922563 TATTTTG i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 823271 7 - 1116856 TGTTTAG i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124802893 151 + 151834684 I e proCoq1.NW_012154285v1 6707241 247 - 9870158 I e canFam3.chr26 33146765 6 - 38964690 I e macNem1.NW_012010578v1 10622709 25 - 16319837 M a score=96938.000000 s hg38.chr12_KI270834v1_alt 52020 8 + 119498 GGTGGAGT s panTro5.chr12 127338054 8 + 137163284 GGTGGAGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688904 8 + 135337776 GGTGGAGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202274 8 - 8369578 GGTGGAGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850229 8 + 106955855 GGTGGAGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975910 8 + 133663169 GGTGGAGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223289 8 + 137757926 GGTGGAGT i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12245703 8 + 20526591 GGTGGAGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218061 8 + 128539186 GGTGGAGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 547774 8 + 6255621 GGTGGAGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594301 8 - 8658521 GGTGGAGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797777 8 + 124281992 GGAGGAGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 441997 6 - 9212255 G--GTAGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856973 8 + 4466143 GGTGGAGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563624 8 + 5364348 AGTGGAGT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9457893 8 - 31815103 GGTGGGGT i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4289463 8 + 7922563 GGTGGAGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33146771 8 - 38964690 GGGAGAGT i canFam3.chr26 I 6 C 0 s dasNov3.JH568189 823278 8 - 1116856 GGTGGCAT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124802893 151 + 151834684 I e proCoq1.NW_012154285v1 6707241 247 - 9870158 I e macNem1.NW_012010578v1 10622709 25 - 16319837 M a score=202406.000000 s hg38.chr12_KI270834v1_alt 52028 15 + 119498 GACGGTTCTTTGCTA s panTro5.chr12 127338062 15 + 137163284 GACGGTTCTTTGCGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688912 15 + 135337776 GACGGTTCTTTGCGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202282 15 - 8369578 GACGGTTCTTTGCTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850237 15 + 106955855 GACTGTTCTTTGCTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975918 15 + 133663169 GACAGTTCTTTGCTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223297 15 + 137757926 GACAGTTCTTTGCTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622734 15 - 16319837 GACAGTTCTTTGCTA i macNem1.NW_012010578v1 M 25 C 0 s cerAty1.NW_012001186v1 12245711 15 + 20526591 GACGGTTCTTTGCTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218069 15 + 128539186 GACGGTTCTTTGCTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 547782 15 + 6255621 GATGGTTCTTTGCTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594309 15 - 8658521 GACGGTTCTTTGCTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797785 15 + 124281992 GATGGTTCTTTGCTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442003 15 - 9212255 GATGGTTCTTTGCTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856981 15 + 4466143 GATGGTTCTTTGCTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563632 15 + 5364348 GATGGTTCTTTGCCA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9457901 15 - 31815103 GATGGCTCTTTGCCA i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4289471 15 + 7922563 GATGGGTCTTTGCCA i otoGar3.GL873618 C 0 I 6 s canFam3.chr26 33146779 15 - 38964690 AAGGGCTCTCTGTCA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 823286 15 - 1116856 AAGAGCTCTTTGCCT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124802893 151 + 151834684 I e proCoq1.NW_012154285v1 6707241 247 - 9870158 I a score=68313.000000 s hg38.chr12_KI270834v1_alt 52043 6 + 119498 GAATGC s panTro5.chr12 127338077 6 + 137163284 GAATGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688927 6 + 135337776 GAATGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202297 6 - 8369578 GAATGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850252 6 + 106955855 GAATGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975933 6 + 133663169 GAATGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223312 6 + 137757926 GAATGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622749 6 - 16319837 GAATGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12245726 6 + 20526591 GAATGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218084 6 + 128539186 GAATGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 547797 6 + 6255621 GAATGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594324 6 - 8658521 GAACGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797800 6 + 124281992 GAAAGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442018 6 - 9212255 GAAAGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2856996 6 + 4466143 GAAAGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563647 6 + 5364348 GAAAGC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9457916 6 - 31815103 GAAAAC i micMur3.chr21 C 0 C 0 s canFam3.chr26 33146794 5 - 38964690 -AAAAC i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 823301 6 - 1116856 GAACTC i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124802893 151 + 151834684 I e proCoq1.NW_012154285v1 6707241 247 - 9870158 I e otoGar3.GL873618 4289486 6 + 7922563 I a score=281308.000000 s hg38.chr12_KI270834v1_alt 52049 22 + 119498 AGGGAAAGTTCTGGAATTGGGG---------- s panTro5.chr12 127338083 22 + 137163284 AGGGAAAGTTCTGGAATTGGGG---------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688933 22 + 135337776 AGGGAAAGTTCTGGAATTGGGG---------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202303 22 - 8369578 AGGGAAAGTTCTGGAACTGGGG---------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850258 22 + 106955855 AGGGAAAGTTCTGGAACTGGGG---------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975939 22 + 133663169 AGGGAAAGTTCTAGAACTGAGG---------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223318 22 + 137757926 AGGGAAAGTTCTAGAACTGAGG---------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622755 22 - 16319837 AGGGAAAGTTCTAGAACTGAGG---------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12245732 22 + 20526591 AGGGAAAGTTCTAGAACTGAGG---------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218090 22 + 128539186 AGGGAAAGTTCTAGAACTGAGG---------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 547803 22 + 6255621 AGGGAAAGTTCTAGAACTGAGG---------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594330 22 - 8658521 AGGGAAAGTTCTAGAACTGAGA---------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797806 22 + 124281992 AGGAGAAGTTCTGGAACTGGGG---------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442024 19 - 9212255 ---AGAAGTTCTGGAACTGGAG---------- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857002 22 + 4466143 AGGAGAAGTTCTGGAACTGGGG---------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563653 22 + 5364348 AGGAGAAGTTCTCGAACTGGGG---------- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9457922 21 - 31815103 -AGGGAAATTCTGGAACTTGGG---------- i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4289492 22 + 7922563 AGGGCAAATTCTGGAACTGGGG---------- i otoGar3.GL873618 I 6 C 0 s canFam3.chr26 33146800 22 - 38964690 AGAGGAAGTTCAAGAACTAGGG---------- i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 823307 32 - 1116856 AGGGAAAGTTCCCGAATAAGAGGAAGCAGGGG i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124802893 151 + 151834684 I e proCoq1.NW_012154285v1 6707241 247 - 9870158 I a score=520136.000000 s hg38.chr12_KI270834v1_alt 52071 31 + 119498 CCAGATTGAGTTGGCTCTTAGAAAAAGGAGC s panTro5.chr12 127338105 31 + 137163284 CCAGACTGAGTTGGCTCTTAGAAAAAGGAGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688955 31 + 135337776 CCAGACTGAGTTGGCTCTTAGAAAAAGGAGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202325 31 - 8369578 CCAGATTGAGTTGGCTCTTAGAAAAAGGAGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850280 31 + 106955855 CCAGATGAAGTTGGCTCTTAGGAAAAGGAGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975961 31 + 133663169 CCAGATGGAGTTGGCTCTTAGAAAAAGGAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223340 31 + 137757926 CCAGATGGAGTTGGCTCTTAGAAAAAGGAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622777 31 - 16319837 CCAGATGGAGTTGGCTCTTAGAAAAAGGAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12245754 31 + 20526591 CCAGATGGAGTTGGCTCTTAGAAAAAGGAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218112 31 + 128539186 CCAGATGGAGTTGGCTCTTAGAAAAAGGAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 547825 31 + 6255621 CCAGATGGAGTTGGCTCTTAGAAAAAGGAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594352 31 - 8658521 CCAGATGGAGTTGGCTCTTAGAAAAAGGAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797828 31 + 124281992 CCAGATGGAGTTGGCTCTTAGAAAAAGGAGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442043 31 - 9212255 CCAGATGGAGTTGGCTCTTAGAAAAAGGAGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857024 31 + 4466143 CCGGAAGGAGTTGGCTCTTAGAAAAAGGAGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563675 31 + 5364348 CCAGATGGAGTTGACTCTTAGAAAAAGGAGC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9457943 31 - 31815103 CCAGATGGAGCTGGCTCTTAGAAAAAGGAGC i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6707488 31 - 9870158 CCAGATGGAGTTGGCTCTTAGAAAAAGGAGC i proCoq1.NW_012154285v1 I 247 C 0 s otoGar3.GL873618 4289514 31 + 7922563 CCAGATGGAGTTGACTCTTAGAAAAAGGAGC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33146822 31 - 38964690 CCAGATGGAACTGGTTCTTAAAAAAAGAAGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 823339 31 - 1116856 CCTGAAGGAATTATTTGTTAGAACAAGGAGC i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124802893 151 + 151834684 I a score=38845.000000 s hg38.chr12_KI270834v1_alt 52102 3 + 119498 TGT s panTro5.chr12 127338136 3 + 137163284 TGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688986 3 + 135337776 TGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202356 3 - 8369578 TGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850311 3 + 106955855 TGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975992 3 + 133663169 TGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223371 3 + 137757926 TGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622808 3 - 16319837 TGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12245785 3 + 20526591 TGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218143 3 + 128539186 TGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 547856 3 + 6255621 TGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594383 3 - 8658521 TGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797859 3 + 124281992 TGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442074 3 - 9212255 TGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857055 3 + 4466143 TAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563706 3 + 5364348 TGT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4289545 3 + 7922563 TGT i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 823370 3 - 1116856 TGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9457974 0 - 31815103 C e mm10.chr5 124802893 151 + 151834684 I e proCoq1.NW_012154285v1 6707519 0 - 9870158 C e canFam3.chr26 33146853 0 - 38964690 C a score=45438.000000 s hg38.chr12_KI270834v1_alt 52105 4 + 119498 Cggc s panTro5.chr12 127338139 4 + 137163284 Cggc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688989 4 + 135337776 Cggc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202359 4 - 8369578 Cggc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850314 4 + 106955855 Cggc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975995 4 + 133663169 CGGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223374 4 + 137757926 CGGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10622811 4 - 16319837 CGGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12245788 4 + 20526591 CGGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218146 4 + 128539186 CGGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 547859 4 + 6255621 CGGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594386 4 - 8658521 CGGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114797862 4 + 124281992 Tggc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442077 4 - 9212255 Tggc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857058 4 + 4466143 Tggc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563709 4 + 5364348 Tggc i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 823373 4 - 1116856 CAGC i dasNov3.JH568189 C 0 I 49 e micMur3.chr21 9457974 0 - 31815103 C e mm10.chr5 124802893 151 + 151834684 I e proCoq1.NW_012154285v1 6707519 0 - 9870158 C e canFam3.chr26 33146853 0 - 38964690 C e otoGar3.GL873618 4289548 0 + 7922563 C a score=22920.000000 s hg38.chr12_KI270834v1_alt 52109 2 + 119498 ca s panTro5.chr12 127338143 2 + 137163284 ca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688993 2 + 135337776 ca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202363 2 - 8369578 ca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850318 2 + 106955855 ca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123975999 2 + 133663169 CA i rheMac8.chr11 C 0 I 9 s macFas5.chr11 128223378 2 + 137757926 CA i macFas5.chr11 C 0 I 9 s macNem1.NW_012010578v1 10622815 2 - 16319837 CA i macNem1.NW_012010578v1 C 0 I 9 s cerAty1.NW_012001186v1 12245792 2 + 20526591 CA i cerAty1.NW_012001186v1 C 0 I 9 s chlSab2.chr11 119218150 2 + 128539186 CA i chlSab2.chr11 C 0 I 9 s manLeu1.NW_012103587v1 547863 2 + 6255621 CA i manLeu1.NW_012103587v1 C 0 I 9 s colAng1.NW_012116043v1 4594390 2 - 8658521 CA i colAng1.NW_012116043v1 C 0 I 9 s calJac3.chr9 114797866 2 + 124281992 ca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442081 2 - 9212255 ca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857062 2 + 4466143 ca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563713 2 + 5364348 ca i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9457974 0 - 31815103 C e mm10.chr5 124802893 151 + 151834684 I e proCoq1.NW_012154285v1 6707519 0 - 9870158 C e dasNov3.JH568189 823377 49 - 1116856 I e canFam3.chr26 33146853 0 - 38964690 C e otoGar3.GL873618 4289548 0 + 7922563 C a score=797353.000000 s hg38.chr12_KI270834v1_alt 52111 308 + 119498 ggcacagtggctaatgcctatagtctcagcactttgggaggccaagggaggaggatcacttgagcccaggagttttagaccagcatgggcagcatagtgagactccatctctac--aaaaaaatttaaaaaattagctgagtgtggtggtatgtacctgtagtcccagccacttgggaggctgaggtgggaggatcacttaagcccaggaattt--------gaggtggcagtgagctatgattgtgccaatgcaccagcctgggtaacaaagcgagaccccacctcttaaaaaaagaaaaaagagagaaaaagaaGT s panTro5.chr12 127338145 308 + 137163284 ggcacagtggctaatgcctatagtctcagcactttgggaggccaagggaggaggatcacttgagcccaggagttttagaccagcatgggtagcatagtgagactccatctctac--aaaaaaatttaaaaaatcagctgagtgtggtggtatgtacctgtagtcccagccacttgggaggctgaggtgggaggatcacttaagcccaggaattt--------gaggtggcagtgagctatgattgtgccaatgcaccagcctgggtaacaaagtgagaccccacctcttaaaaaaagaaaaaagagagaaaaagaaGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125688995 308 + 135337776 ggcacagtggctaatgcctatagtctcagcactttgggaggccaagggaggaggatcacttgagcccaggagttttagaccagcatgggtagcatagtgagactccatctctac--aaaaaaatttaaaaaatcagctgagtgtggtggtatgtacctgtagtcccagccacttgggaggctgaggtgggaggatcacttaagcccaggaattt--------gaggtggcagtgagctatgattgtgccaatgcaccagcctgggtaacaaagtgagaccccacctcttaaaaaaagaaaaaagagagaaaaagaaGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202365 307 - 8369578 ggcacagtggctaatgcctatagtctcagcactttgggaggccaagggaggaggatcacttgagcccaggagttttagaccagcctgggcagcatagtgagactccatctccac--aaacaaatttaaaaaattagctgagtgtggtggtatgtacctgtagtcccagccacttgggaggctgaggtgggaggatcacttaagccca-gaattt--------gaggtggcagtgagctatgattgtgccagtgcaccagcctgggtaacaaagcgagaccccacctcttaaaaaaagaaaaaagaaagaaaaagaaGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850320 308 + 106955855 ggcacagtggctcatgcctgtagtctcagcactttgggaggccaaggggggaggatcacttgagcccaggagttttagaccagcctggacagcatagtgagactccatctctac--aaaaacacttcaaaaattagctgagtgtggtggtatgtgcctgtagtcccagccacttgggagactgaggtgggaggatcacttaagcccaggaattt--------gaggtggcagtgagctatgattgtgccaaggtaccagcctgggtaacaaagcgagaccccacctcttaaaaaaagaaaaaagaaagaaaaagaaGT i nomLeu3.chr10 C 0 C 0 s calJac3.chr9 114797868 296 + 124281992 ggtgcagtggctcatggctgtggtctcagcattttgggaggccaa---aggaggattacttgagcctaggagttttagaccagcctgggcagcatagtgagactccatctctataaaaaaaaaatt-aaaaattagctgaatgtgctggtgcatacctgtagtcccagctacttgggaggct----------gatcacttaagcccaggaattt--------gagatggcggcgagctgtgattgcgccagtgcaccagcctgggtaacaaagcgagaccccgtttcttaaaataagaaaaaaggaagaaaaagaaGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442083 297 - 9212255 ggtgcagcggctcatggctgtggtctcagcattttgggaggctga---aagaggattacttgagcctaggagttttagactagcctgggcagcatagtgaga-tctatctctat--aaaaaaattt-aaagattagctgaaagtggtggtgcatacctgtagtcccagcaacttgggaggct----------gatcacttaagcccaggaatttgagatggcgagatggcggtgagctatgattgcaccagtgcaccagcctgggtaaccaagcgagaccctgtttcttaaaataagaaaa----aagaaaaagaaGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857064 293 + 4466143 ggtgcagtggctcatggctatggtctcagcattttgggaggccaa---aggaggattacttgagcctgggagttttagaccagcctgggcagcatagtgagactccatctctat---aaaaaaatt-aaaaaatagctgaatgtggtggtgcatacctgtagtcccagccacttgggaggct----------gatcgcttaagcccaggaattt--------gagacggcggtgagccatggttgcgccagtgcaccagcctgggtaacaaagcaaggccccgtttcttaaaataagaagaaagaaaaaaaaaGGAGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563715 268 + 5364348 ggtgcagtggctcatggctgtggtctcggcattttgggag-----------------------gcctaggagttttagatcggcctgggcagcatagtgagactccatctctat--aaaaaaaatt-aaaaattagctgaat------ccacatacctgtagtcccagccacttgggaggct----------gatcacttaagcccaggaattt--------gagatggtggtgagctatgattgcgccagtgcaccggcctgggtaacaaagcgagaccctgtttcttaaaataagaaaaaagaaaGGAAAAAAAGC i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9457974 0 - 31815103 C e mm10.chr5 124802893 151 + 151834684 I e proCoq1.NW_012154285v1 6707519 0 - 9870158 C e dasNov3.JH568189 823377 49 - 1116856 I e canFam3.chr26 33146853 0 - 38964690 C e otoGar3.GL873618 4289548 0 + 7922563 C e colAng1.NW_012116043v1 4594392 9 - 8658521 I e manLeu1.NW_012103587v1 547865 9 + 6255621 I e chlSab2.chr11 119218152 9 + 128539186 I e cerAty1.NW_012001186v1 12245794 9 + 20526591 I e macNem1.NW_012010578v1 10622817 9 - 16319837 I e macFas5.chr11 128223380 9 + 137757926 I e rheMac8.chr11 123976001 9 + 133663169 I a score=16577.000000 s hg38.chr12_KI270834v1_alt 52419 3 + 119498 TGC s panTro5.chr12 127338453 3 + 137163284 TAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689303 3 + 135337776 TAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202672 3 - 8369578 TGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850628 3 + 106955855 TGC i nomLeu3.chr10 C 0 C 0 s calJac3.chr9 114798164 3 + 124281992 TGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442380 3 - 9212255 TGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857357 3 + 4466143 TGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563983 3 + 5364348 TGC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9457974 3 - 31815103 TGC i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6707519 3 - 9870158 TGC i proCoq1.NW_012154285v1 C 0 C 0 s canFam3.chr26 33146853 3 - 38964690 TGC i canFam3.chr26 C 0 C 0 e mm10.chr5 124802893 151 + 151834684 I e dasNov3.JH568189 823377 49 - 1116856 I e otoGar3.GL873618 4289548 0 + 7922563 C e colAng1.NW_012116043v1 4594392 9 - 8658521 I e manLeu1.NW_012103587v1 547865 9 + 6255621 I e chlSab2.chr11 119218152 9 + 128539186 I e cerAty1.NW_012001186v1 12245794 9 + 20526591 I e macNem1.NW_012010578v1 10622817 9 - 16319837 I e macFas5.chr11 128223380 9 + 137757926 I e rheMac8.chr11 123976001 9 + 133663169 I a score=87006.000000 s hg38.chr12_KI270834v1_alt 52422 13 + 119498 CAGTGACCCTGAT s panTro5.chr12 127338456 13 + 137163284 CAGTGACCCTGAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689306 13 + 135337776 CAGTGACCCTGAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202675 13 - 8369578 CAGTGACCCTGAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850631 13 + 106955855 CAGTGACCCTGAT i nomLeu3.chr10 C 0 C 0 s calJac3.chr9 114798167 13 + 124281992 CAGTGACCCTGAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442383 13 - 9212255 CAGTGACCCTCAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857360 13 + 4466143 CAGTGACCCTGAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563986 13 + 5364348 CAGTGACCCTGAT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9457977 13 - 31815103 CAGTGGCCCTGAT i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6707522 13 - 9870158 CAGTGGCCCTGAT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4289548 13 + 7922563 CAGTAGCCCTGAT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33146856 13 - 38964690 CAGTGGCCTTGAT i canFam3.chr26 C 0 C 0 e mm10.chr5 124802893 151 + 151834684 I e dasNov3.JH568189 823377 49 - 1116856 I e colAng1.NW_012116043v1 4594392 9 - 8658521 I e manLeu1.NW_012103587v1 547865 9 + 6255621 I e chlSab2.chr11 119218152 9 + 128539186 I e cerAty1.NW_012001186v1 12245794 9 + 20526591 I e macNem1.NW_012010578v1 10622817 9 - 16319837 I e macFas5.chr11 128223380 9 + 137757926 I e rheMac8.chr11 123976001 9 + 133663169 I a score=87784.000000 s hg38.chr12_KI270834v1_alt 52435 13 + 119498 GCTGATTTTAAAT s panTro5.chr12 127338469 13 + 137163284 GCTGATTTTAAAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689319 13 + 135337776 GCTGATTTTAAAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202688 13 - 8369578 GCTGACTTTAAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850644 13 + 106955855 GCTGATTTTAAAT i nomLeu3.chr10 C 0 C 0 s calJac3.chr9 114798180 13 + 124281992 GCTGGTTTTAAAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442396 13 - 9212255 GCTGGTTTTAAAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857373 13 + 4466143 GCTGGTTTTAAAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1563999 13 + 5364348 GCTGGTTTTAAAT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9457990 13 - 31815103 GCCGATTTTGAAT i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6707535 13 - 9870158 GCTGATTTTGAAT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4289561 13 + 7922563 CTTGATTTAGAAT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124803044 13 + 151834684 GCTGATTTTAAGT i mm10.chr5 I 151 C 0 s canFam3.chr26 33146869 13 - 38964690 GCCGATTTTAAAT i canFam3.chr26 C 0 C 0 e dasNov3.JH568189 823377 49 - 1116856 I e colAng1.NW_012116043v1 4594392 9 - 8658521 I e manLeu1.NW_012103587v1 547865 9 + 6255621 I e chlSab2.chr11 119218152 9 + 128539186 I e cerAty1.NW_012001186v1 12245794 9 + 20526591 I e macNem1.NW_012010578v1 10622817 9 - 16319837 I e macFas5.chr11 128223380 9 + 137757926 I e rheMac8.chr11 123976001 9 + 133663169 I a score=116150.000000 s hg38.chr12_KI270834v1_alt 52448 22 + 119498 TCATGTATTCCAACAAGTAGGG s panTro5.chr12 127338482 22 + 137163284 TCATGTATTCCAACAAGTAGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689332 22 + 135337776 TCATGTATTCCAACAAGTAGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202701 22 - 8369578 TCATGTATTCCAACAAGTAGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850657 22 + 106955855 TCATGTATTCCAACAAGTAGGG i nomLeu3.chr10 C 0 C 0 s calJac3.chr9 114798193 21 + 124281992 CC-TGTATTCCAGCAAGTAGGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442409 22 - 9212255 CTGTGCATTCCAGCAAGTAGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857386 22 + 4466143 CTGTGTATTCCAGCAAGTAGGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564012 22 + 5364348 CCGTGTATTCCAGCAAGTAGGG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9458003 22 - 31815103 CCATATTTTCCAGCAAGTGGGG i micMur3.chr21 C 0 I 283 s proCoq1.NW_012154285v1 6707548 21 - 9870158 TCGTATATTCCAGCAAGTGGG- i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4289574 22 + 7922563 TCATATATTCCAGCAAGTATGG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124803057 21 + 151834684 TCATGCATCCTAGCACGTAAG- i mm10.chr5 C 0 C 0 s canFam3.chr26 33146882 22 - 38964690 TCATGAGCTCCAGCAAGTAGGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 823426 9 - 1116856 TCAGGTATT------------- i dasNov3.JH568189 I 49 C 0 e colAng1.NW_012116043v1 4594392 9 - 8658521 I e manLeu1.NW_012103587v1 547865 9 + 6255621 I e chlSab2.chr11 119218152 9 + 128539186 I e cerAty1.NW_012001186v1 12245794 9 + 20526591 I e macNem1.NW_012010578v1 10622817 9 - 16319837 I e macFas5.chr11 128223380 9 + 137757926 I e rheMac8.chr11 123976001 9 + 133663169 I a score=137075.000000 s hg38.chr12_KI270834v1_alt 52470 32 + 119498 ATGATGTCAGGTACTTATT-----------------------------TTACGTCATTTAT s panTro5.chr12 127338504 61 + 137163284 ATGATGTCAGGTACTTATGATGTATTCATGTATTCCAACAAGTAGGGATGATGTCATTTAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689354 32 + 135337776 ATGATGTCAGGTACTTATT-----------------------------TTACGTCATTTAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202723 32 - 8369578 ATGATGTCAGGTACTTATT-----------------------------TTACGTCATTTAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850679 32 + 106955855 ATGATGTCAGGTACTTATT-----------------------------TTACGTCATTTAT i nomLeu3.chr10 C 0 C 0 s calJac3.chr9 114798214 31 + 124281992 A-GATGTTAGGTACTTATT-----------------------------TTATGTCATTTAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442431 31 - 9212255 A-GATGTCAGGTACTTATT-----------------------------TTATGTCATTTAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857408 31 + 4466143 A-GATGTCAGGTACTTATT-----------------------------TTATGTCATTTAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564034 31 + 5364348 A-GATGTCAGGTACTTATT-----------------------------TTATGTCATTTAT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6707569 32 - 9870158 GCGACGTTAGGTGCTTACT-----------------------------TTATGTCATTTAT i proCoq1.NW_012154285v1 C 0 I 252 s otoGar3.GL873618 4289596 32 + 7922563 GTGATATTATGTACTTATT-----------------------------TTATGTCATTTAT i otoGar3.GL873618 C 0 I 7 s mm10.chr5 124803078 21 + 151834684 -TGAGGCC----------T-----------------------------TTGGATCGCATAC i mm10.chr5 C 0 C 0 s canFam3.chr26 33146904 32 - 38964690 GCAGTGTCAGGTTCTCATT-----------------------------TTATGTCATTTAT i canFam3.chr26 C 0 I 9 s dasNov3.JH568189 823435 17 - 1116856 ---------------TATT-----------------------------TTATGTCATTTAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9458025 283 - 31815103 I e colAng1.NW_012116043v1 4594392 9 - 8658521 I e manLeu1.NW_012103587v1 547865 9 + 6255621 I e chlSab2.chr11 119218152 9 + 128539186 I e cerAty1.NW_012001186v1 12245794 9 + 20526591 I e macNem1.NW_012010578v1 10622817 9 - 16319837 I e macFas5.chr11 128223380 9 + 137757926 I e rheMac8.chr11 123976001 9 + 133663169 I a score=66377.000000 s hg38.chr12_KI270834v1_alt 52502 16 + 119498 AGAC--------AACGCTCTTTTT s panTro5.chr12 127338565 16 + 137163284 AGAC--------AACATTCTTTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689386 16 + 135337776 AGAC--------AACATTCTTTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202755 16 - 8369578 AGAC--------AACGCTCTTTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850711 16 + 106955855 AGAC--------AACGCTCTTTTT i nomLeu3.chr10 C 0 C 0 s calJac3.chr9 114798245 16 + 124281992 AGAC--------AACGCTCTTTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442462 14 - 9212255 AGAT--------AA--CTCTTTAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857439 16 + 4466143 AGAC--------AACGCTCTTTTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564065 16 + 5364348 AGAC--------AACGCTCTTTTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4289635 16 + 7922563 ACAT--------AACACTCTTTTT i otoGar3.GL873618 I 7 C 0 s mm10.chr5 124803099 24 + 151834684 AGATCTGACAGGAAGGCTCCATTT i mm10.chr5 C 0 C 0 s canFam3.chr26 33146945 16 - 38964690 AGAT--------AATGTTCTTTTT i canFam3.chr26 I 9 C 0 s dasNov3.JH568189 823452 14 - 1116856 AGAT--------AATGCTCTTT-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9458025 283 - 31815103 I e proCoq1.NW_012154285v1 6707601 252 - 9870158 I e colAng1.NW_012116043v1 4594392 9 - 8658521 I e manLeu1.NW_012103587v1 547865 9 + 6255621 I e chlSab2.chr11 119218152 9 + 128539186 I e cerAty1.NW_012001186v1 12245794 9 + 20526591 I e macNem1.NW_012010578v1 10622817 9 - 16319837 I e macFas5.chr11 128223380 9 + 137757926 I e rheMac8.chr11 123976001 9 + 133663169 I a score=2217172.000000 s hg38.chr12_KI270834v1_alt 52518 232 + 119498 TTCTTTCC--TACAGTAAGATAAGCTACGGATGATGACTTTAGGGGGTTTACA-T-TACTTTCTTAGCTTCTGTTGGATTCTCTGGTTAGATTTCATTAACG-TGAGACTAG--GGGGGC----ACGACTGGAGAAATGTTGGGCCTTTATTGCGC------tctgtgtgtctgtctgtctgaatgtcACAGCCGTCAGCCCTGGTATCCTTCAGGTGACTTCCTGGCTGATTTTTGTCCCTTCCATTC s panTro5.chr12 127338581 228 + 137163284 TTCTTTCC--TACAGTAAGATAAGCTACGGATGATGACTTTAGGGGGTTTACA-T-TACTTTCTTAGCTTCTGTTGGATTCTCTGGTTAGATTTCATTAACG-TGAGACTAG--GGGGGC----AGGACTGGCGAAATGTTGGGCCTTTATTGCGC------TCTGTG----TATCTGTCTGAATGTCACAGCCGTCAGCCCTGGTATCCTTCAGGTGACTTCCTGGCTGATTTTTGTCCCTTCCATTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689402 228 + 135337776 TTCTTTCC--TACAGTAAGATAAGCTACGGATGATGACTTTAGGGGGTTTACA-T-TACTTTCTTAGCTTCTGTTGGATTCTCTGGTTAGATTTCATTAACG-TGAGACTAG--GGGGGC----AGGACTGGCGAAATGTTGGGCCTTTATTGCGC------TCTGTG----TATCTGTCTGAATGTCACAGCCGTCAGCCCTGGTATCCTTCAGGTGACTTCCTGGCTGATTTTTGTCCCTTCCATTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202771 228 - 8369578 TTCTTTCC--TACAGTAAGATAAGCTACGGATGATGACTTTAGGGGGTTTACA-T-TACTTTCTTAGCTTCTGTTGGATTCTCTGGTTAGATTTCATTAACG-TGAGACTAG--GGGGGC----AGGACTGGAGAAATGTTGGGCCTTTATTGCGC------TCTGTG----TGTCTGTCTGAATGTCACAGCCGTCAGCCCTGGTATCCTTCAGGTGACTTCCTGGCTGATTTTTGTCCCTTCCATTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850727 229 + 106955855 TTCTTTCC--TACAGTAAGATAAGCTACGGATGATGACTTTAGGGGGGTTACA-C-TACTTTCTTAGCTTCTGTTGGACTGTCTGGTTAGATTTCATTAACGTTGAGACTAG--GGGGGC----AGGACTGGAGAAATGTTGGGCCTTTATTGTGC------TCTGTG----CATCTGTCTGAATGTCACAGCTGTCAGCCCTGGTATCCTTCAGGTGACTTCCTGGCTGATTTTTGTCCCTTCCATTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123976010 213 + 133663169 TTCTTTCC--TACAGTAAGATAAGCTACGGATGATGACTT----------------GACTTTATTAGCTTCTGTTGGATTCTCTGGTTAGATTTCATTAACA-TAAGACTA---GGGGGC----AGGACTGGAGAAATGTTGGGCTTTTGTTGCAC------CCTGTG----TGTCTGTCTGAATGTCACAGCCGTCAGCCCTGGGATCCTGCAGGTGACTTCCTGGCTGACTTTTGTCCCTTCCACTC i rheMac8.chr11 I 9 C 0 s macFas5.chr11 128223389 213 + 137757926 TTCTTTCC--TACAGTAAGATAAGCTACGGATGATGACTT----------------GACTTTATTAGCTTCTGTTGGATTCTCTGGTTAGATTTCATTAACA-TAAGACTA---GGGGGC----AGGACTGGAGAAATGTTGGGCTTTTGTTGCAC------CCTGTG----TGTCTGTCTGAATATCACAGCCGTCAGACCTGGGATCCTGCAGGTGACTTCCTGGCTGACTTTTGTCCCTTCCATTC i macFas5.chr11 I 9 C 0 s macNem1.NW_012010578v1 10622826 213 - 16319837 TTCTTTCC--TACAGTAAGATAAGCTACGGATGATGACTT----------------GACTTTATTAGCTTCTGTTGGATTCTCTGGTTAGATTTCATTAACA-TAAGACTA---GGGGGC----AGGACTGGAGAAATGTTGGGCTTTTGTTGCAC------CCTGTG----TGTCTGTCTGAATGTCACAGCCGTCAGCCCTGGGATCCTGCAGGTGACTTCCTGGCTGACTTTTGTCCCTTCCATTC i macNem1.NW_012010578v1 I 9 C 0 s cerAty1.NW_012001186v1 12245803 212 + 20526591 TTCTTTCC--TACAGTAAGATAAGCTATGGATGATGACTT----------------GACTTTATTAGCTTCTGTTGGATTCTCTGGTTAGATTTCATTAACA-TGAGACC----GGGGGC----AGGACTGGAGAAATGTTGGGCTTTTGTTGCGC------CCTGTG----TGTCTGTCTGAATGTCACAGCCGTCAGCCCTGGGATCCTGCAGGTGACTTCCTGGCTGACTTTTGTCCCTTCCATTC i cerAty1.NW_012001186v1 I 9 C 0 s chlSab2.chr11 119218161 214 + 128539186 TTCTTTCC--TACAGTAAGATAAGCTATGGATGATGACTT----------------GACTTTATTAGCTTCTGTTGGATTCTCTGGTTAGATTTCATTAACA-TGAGACTAG--GGGGGC----AGGACTGGAGAAATGTTGGGCTTTTGTTGCAC------CCTGTG----TGTCTGTCTGAATGTCACAGCCATCAGCCCTGGGATCCTGCAGGTGACTTCCTGGCTGACTTTTGTCCCTTCCATTC i chlSab2.chr11 I 9 C 0 s manLeu1.NW_012103587v1 547874 213 + 6255621 TTCTTTCC--TACAGTAAGATAAGCTACGGATGATGACTT----------------GACTTTATTAGCTTCTGTTGGATTCTCTGGTTAGATTTCATTAACG-TGAGACTA---GGCGGC----AGGACTGGAGAAATGTTGGGCTTTTGTTGCGC------CCTGTG----TGTCTGTCTGAATGTCACAGCCGTCAGCCCTGGGATCCTGCAGGTGACTTCCTGGCTGACTTTTGTCCCTTCCATTC i manLeu1.NW_012103587v1 I 9 C 0 s colAng1.NW_012116043v1 4594401 214 - 8658521 TTCTTTCC--TACAGTAAGATAAGCTACAGATGATGACTT----------------GACTTTATTAGCTTTTGTTGGATTCTCTGGTTAGATTTCATTAACA-TGAGACTAG--GGGGGC----AGGACTGGAGAAATGTTGGGCTTTTGTTGCGC------CCTGTG----TGTGTGTCTGAATGTCACAGCCGTCAGCCCTGGTATCCTGCAGGTGACTTCCTGGCTGACTTTTGTCCCTTCCATTC i colAng1.NW_012116043v1 I 9 C 0 s calJac3.chr9 114798261 229 + 124281992 TTCTTTCC--CACAGTAAGATAAGCTACGGATGATGACTTTAGAGTCTTTACA-T-TAATTTATTAGCTTCTGTTGGGTCCTCTGGTTAGATTTCATTTATG-TGAGACTAG-CAGGGGC----AAGACTAGAGAAACATTGTGCCTTTACAGGGC------CCTGTG----TGTCTGTGTGACCGTCACAGCCGTCGGCCCTGGTATCCTGCAGGGGGCTTCCTGGCTGATTTTTGTCTCTTCCATTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442476 225 - 9212255 TTCTTTC-----CAGTAAGATAAGCTATGGATGATGACTTTAGGGTCTTTACA-T-T-ATTTATTAGCTTCTGTTGGGTCCTCTGGTTAGATTTCATTTATG-TGAGACTAG-CAGGGGC----AAGATTAGAGAAACGCTGGGCCTTTACTGGGC------CCTGTG----TGCCTGTGTGACCGTCACAGCCGTCGGCCCTGGTATCCTGCAGGTGGCTTCCTGGCTGATTTTTGTCTCTTCCATTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857455 229 + 4466143 TTCTTTCC--TACAGTAAGATTAGCTACAGATGATGACTTTAGGGTCTTTACA-T-TAATTTATTAGCTTCTGTTGGGTCCTGTGGTTAGATTTCATTTATG-TGAGACTAG-CAAGGGC----AAGACTAGAGAGACGCTGGGCCTTTACTGGGC------CCTGTG----TGTCTGTATGACTGTCACAGCCGTCGGTCCTGGTATCCTGCAGGTGGCTTCCTGGCTGATTTTTGTCTCTTCCATTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564081 229 + 5364348 TTCTTTCC--TACAGTAAGGTAAGCTACGGATGATGACTTTAGGGTCTTTACA-T-TAATTTATTAGCTTCTGTTGGGTCCTCTGGTTAGATTTCATTTATG-TGAGACTAG-CAGGGGC----AAGACTAGAGAAACGTTGGGCCTTTACTGGGC------CCTGTG----TGTCTGTGTGACCGTCACAGTCTTCGGCCCTGGTATCCTGCAGGTGGCTTCCTGGCTGATTTTTGTCTCTTCCATTC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4289651 203 + 7922563 TCCCCCCCATTATAGTAAGGTAAGTTATAGATGATAACATTGTGGTCTT-------TAATTTGTTAGTTTCTGTTGGGCAC-------AGA----ATTGAGG-TGAG-------GGGGG-------AACTATAGAAATGTTGGTCCTTTCCTGCTC------CCTGAG----TAAGCATCTAAAAATGGTGG-CATAAGCCC-ACTCTTCCATATGTGGCCTCATGGCTGA-TTTTGCCCCTTGTATTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124803123 179 + 151834684 --CTTCTT--TTCGGTAGGATGAGCTGTGAGTGAGGAGTTCGTGGCCCCTTTA-TATAATTTGCTGGCTTCCG------------GTTAGA----------A-CAGGACAG---AGAGGC--------TTTTAGAAATATGGCTCTTGTGCTCCCCGACCCACCTGGG----CCCCT---------TCCTCCCCAGCGGACCTGGTGACCCACAA-----------------CATCGTCCTTCTCCTA- i mm10.chr5 C 0 C 0 s canFam3.chr26 33146961 211 - 38964690 --CTTCCC--TATGG-AGGATAAATTATAGATGATGATTTTATGGTCTTTACACT-TAATTTGTTAGCTTCCA-------------TTAAATTTCATTAATG-TGAGAACAG--GGGGAAGAAAAGAACTATAGAAATGT----CCTTTTCCATGC------TCTGTG----TATCCATCTGAAAATAGTAGCATTTAGCCCCCCTCT-CTCTAAATGACTTCATGACTGA-TTTTGCCCCTTCTATCA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 823466 220 - 1116856 TTCTTCCC--TGCAATAGAAT--GTTATGGACGATGATTTTAGAGCCTTTATA-T-TACATTGTTCGCTTCTGGTGAGCTCTTAGGTTAGATTTCATTAATG-CAAGGCTGGGGAAAGGA----GGGGCTATGGAAGTGTTTGTCCTTTTCTGTAC------CCTGTG----TATGCACCTGAAAAGAGT-------GGCATTGCATTTCTCTATAGGGCTTGGTTGCTGA-TTTTGCCCCTTTCATCA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9458025 283 - 31815103 I e proCoq1.NW_012154285v1 6707601 252 - 9870158 I a score=19110.000000 s hg38.chr12_KI270834v1_alt 52750 1 + 119498 T s panTro5.chr12 127338809 1 + 137163284 T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689630 1 + 135337776 T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8202999 1 - 8369578 T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850956 1 + 106955855 T i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123976223 1 + 133663169 T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223602 1 + 137757926 T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10623039 1 - 16319837 T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12246015 1 + 20526591 T i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218375 1 + 128539186 T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 548087 1 + 6255621 T i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594615 1 - 8658521 T i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114798490 1 + 124281992 T i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442701 1 - 9212255 T i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857684 1 + 4466143 T i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564310 1 + 5364348 T i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9458308 1 - 31815103 T i micMur3.chr21 I 283 C 0 s otoGar3.GL873618 4289854 1 + 7922563 T i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124803302 1 + 151834684 T i mm10.chr5 C 0 C 0 s canFam3.chr26 33147172 1 - 38964690 T i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 823686 1 - 1116856 T i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6707601 252 - 9870158 I a score=2039753.000000 s hg38.chr12_KI270834v1_alt 52751 104 + 119498 GCAGATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAGTGTCTGAGAGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGCAGCTGGTCAGT s panTro5.chr12 127338810 104 + 137163284 GCAGATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAGTGTCTGAGAGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGCAGCTGGTCAGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689631 104 + 135337776 GCAGATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAGTGTCTGAGAGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGCAGCTGGTCAGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203000 104 - 8369578 GCAGATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAGTGTCTGAGAGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGCAGCTGGTCAGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97850957 104 + 106955855 GCAGATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAGTGTCTGAGAGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGCAGCTGGTCAGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123976224 104 + 133663169 GCAGATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAATGTCTGAGAGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGCAGCTGGTCAGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223603 104 + 137757926 GCAGATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAATGTCTGAGAGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGCAGCTGGTCAGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10623040 104 - 16319837 GCAGATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAATGTCTGAGAGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGCAGCTGGTCAGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12246016 104 + 20526591 GCAGATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAATGTCTGAGAGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGCAGCTGGTCAGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218376 104 + 128539186 GCAGATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAATGTCTGAGAGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGCAGGTGGTCAGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 548088 104 + 6255621 GCAGATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAATGTCTGAGAGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGCAGCTGGTCAGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594616 104 - 8658521 GCAGATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAATGTCTGCGAGTCTTCCATGACCGGCTGATCAGTGAAACAGACAAGCAGCTGGTCAGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114798491 104 + 124281992 GCAGATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAGTGTCTGAGAGTGTTCCACGACCGGCTGATCAGTGAAACAGACAAGTATCTGGTCAGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442702 104 - 9212255 GCAGATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAGTGTCTGAGAGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGCGTCTGGTCAGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857685 104 + 4466143 GCAGATTCCAGACAGTGGCCCAGGTGGTGAGAGTCTGGAGGAATGAGTGTCTGAGGGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGTGTCTGGTCAGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564311 104 + 5364348 GCAGATTCCAGATGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAGTGTCTGAGAGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGCGTCTGGTCAGT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9458309 104 - 31815103 GCAGGTTCCAGACGGTGGCCCAGATGGTGAGGGTCTGGAGGAACGAGTGCCTGAGAGTCTTCCACGACCGGCTGATCAATGAAATAGACAAGCAGCTGGTCAGT i micMur3.chr21 C 0 I 249 s proCoq1.NW_012154285v1 6707853 104 - 9870158 GCAGGTTCCAGACGGTGGCCCAGATGGTGAGAGTGTGGAGGAACGAGTGCCTCAGAGTCTTCCACGACCGGCTGATCAATGACACAGACAAGCAGCTGGTCAGT i proCoq1.NW_012154285v1 I 252 C 0 s otoGar3.GL873618 4289855 104 + 7922563 GCAGATTCCATACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAGTGTCTGAGAGTCTTTCACGATCGGCTGATCAGTGAAATGGACAAGCAGCTGGTGAGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124803303 104 + 151834684 GTAGGTTTCAGACAGTGTCCCAGATGGTGAGGGTGTGGAGAAATGAGTGCTTGCGGGTTTTCCATGACCGGCTCATCAACGAAGTAGACAAGGAGCTGGTGAGC i mm10.chr5 C 0 C 0 s canFam3.chr26 33147173 104 - 38964690 GTAGGTTCCAGACAGTGACCCAGATGGTGAGAGTCTGGAGAAACGAGTGTCTGAGAGTCTTCCATGACCGATTAATCAACGAAACAGACAAACAGCTGGTCAGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 823687 104 - 1116856 GTAGGTTTCAGACGGTGACCCAGATGGTGAGAGTCTGGAGGAACGAGTGTCTGAGAGTCTTCCATGACAGATTAATCAATAAAACCGACAAGAAGCTGGTGAGT i dasNov3.JH568189 C 0 C 0 a score=35123.000000 s hg38.chr12_KI270834v1_alt 52855 2 + 119498 AC s panTro5.chr12 127338914 2 + 137163284 AC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689735 2 + 135337776 AC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203104 2 - 8369578 AC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851061 2 + 106955855 AC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123976328 2 + 133663169 AC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223707 2 + 137757926 AC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10623144 2 - 16319837 AC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12246120 2 + 20526591 AC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218480 2 + 128539186 AC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 548192 2 + 6255621 AC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594720 2 - 8658521 AC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114798595 2 + 124281992 AC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442806 2 - 9212255 AC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857789 2 + 4466143 AC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564415 2 + 5364348 AC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6707957 2 - 9870158 AC i proCoq1.NW_012154285v1 C 0 I 290 s otoGar3.GL873618 4289959 2 + 7922563 AC i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124803407 2 + 151834684 AT i mm10.chr5 C 0 I 227 s canFam3.chr26 33147277 2 - 38964690 AC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 823791 2 - 1116856 AT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9458413 249 - 31815103 I a score=849042.000000 s hg38.chr12_KI270834v1_alt 52857 103 + 119498 -ATCCAA-TGCTTCTTC----------------TCAGGAAATTCTTCTCAGG--AAAATAAACAAGCG-------------------CCAAAAGTGTTTTTTATATTAGGACGCGAATT------------------------------------GTGGAAAAATAGGCAC------GAAAGGT s panTro5.chr12 127338916 103 + 137163284 -ATCCAA-TGCTTCTTC----------------TCAGGAAATTCTTCTCAGG--AAAATAAACAAGCG-------------------CCAAAAGTGTTTTTTATATTAGGATGCGAATT------------------------------------GTGGAAAAATAGGCAC------GAAAGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689737 103 + 135337776 -ATCCAA-TGCTTCTTC----------------TCAGGAAATTCTTCTCAGG--AAAATAAACAAGCG-------------------CCAAAAGTGTTTTTTATATTAGGATGCGAATT------------------------------------GTGGAAAAATAGGCAC------GAAAGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203106 103 - 8369578 -ATCCAA-TGCTGCTTC----------------TCAGGAAATTCTTCTCAGG--AAAATAAACAAGCG-------------------CCAAAAGTGTTTTTTATATTAGGACGCGAATT------------------------------------GTGGAAAAATAGGCAC------GAAAGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851063 102 + 106955855 -ATCCAA-TGCTTCTTC----------------TCAGGAAATTCTTCTCAGG--AAAATAAACAAGCG-------------------CCAAAAGTGTTTTTTACG-TAAGATGTGAATT------------------------------------GCGGAAAAATAGGCAC------GAAAGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123976330 113 + 133663169 -CTCCAG-TGCACCAGCAAGTGCAAAGCTC-AGCCAGAAAATTCTTCTCAGG--AAAAT----AAGCG-------------------CCAAATGTGTTTTTTATA-TAGGACACAAATT------------------------------------GCAGAAAAATAGGCAC------GAGAGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223709 117 + 137757926 -CTCCAG-TGCACCAGCAAGTGCAAAGCTC-AGCCAGAAAATTCTTCTCAGG--AAAATAAACAAGCG-------------------CCAAATGTGTTTTTTATA-TAGGACACAAATT------------------------------------GCAGAAAAATAGGCAC------GAGAGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10623146 117 - 16319837 -CTCCAG-TGCACCAGCAAGTGCAAAGCTC-AGCCAGAAAATTCTTCTCAGG--AAAATAAACAAGCG-------------------CCAAATGTGTTTTTTATA-TAGGACACAAATT------------------------------------GCAGAAAAATAGGCAC------GAGAGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12246122 117 + 20526591 -CTCCAG-TGCACCAGCAAGTGCGAAACTC-AGCCAGAAAATTCTTCTCAGG--AAAATAAACAAGCG-------------------CCAAAAGTGTTTTTTATA-TAGGACACAAATT------------------------------------GCAGAAAAATAGGCAC------GAGAGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218482 117 + 128539186 -TTCCAG-TGCACCAGCAAGTGCAAAACTC-AGCCAGAAAATTCTTCTCAGG--AAAATAAACAAGCG-------------------CCAAATGTGTTTTTTATA-TAGGACACGAATT------------------------------------GCAGAAAAATAGGCAC------GAGAGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 548194 117 + 6255621 -CTCCAG-TGCACCAGCAAGTGCAAAACTC-AGCCAGAAAATTCTTCTCAGG--AAAATAAACAAGCG-------------------CCAAAAGTGTTTTTTATA-TAGGACACAAATT------------------------------------GCAGAAAAATAGGCAC------GAGAGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594722 117 - 8658521 -TTCCCG-TGCACCAGCAAGTGCAAAACTC-AGCCAGAAAATTCTTCTCAGG--AAAATAAACAAGCG-------------------CCAAAAGTGTTTTTTATA-TAGGACACGAATT------------------------------------GCAGAAGAATAGGCAC------GAGAGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114798597 120 + 124281992 -ATCCAG-TGCATCAGCAAGGGCAAAACTC-AGTCACCAAA---TTCTCAGG--AAAATAAACAAGCG-------------------CCGAAAGGGCTTTTTATA-CAGGACACTAATT------------------------------------GCAGAAAAATAGACACTAACACAAGACGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442808 120 - 9212255 -GTCCAA-TGCATCAGCAAGGGCAAAACTC-AGCCACCAAA---TTCTCAGG--AAAATAAACAAGCA-------------------CCAAACGGGCTTTTTGTA-CAGGAAGCTAATT------------------------------------GCAGAAAAATAGACACTCCCACGAGAAGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857791 120 + 4466143 -GTCCAA-TGCATCAGCAAGAGCAAAACTC-AGCGACCAAA---TTCTCAGG--AAAATAAACAAGCG-------------------CCAAAAGGGCTTTTTATA-CAGGACGCTAATT------------------------------------GCAGGAAAATAGACACTAACATGAGAAGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564417 116 + 5364348 -CTCCAA-TGCATCAGCAAGGGCAAAACTC-AGCCACCAAA---TTCTCAGG--AAAAT----AAGCA-------------------CCCAAAGGACGTTTTATA-CAGGACGCTAATT------------------------------------GCAGAAAAATAGACACTGACACGAGAAGT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4289962 102 + 7922563 -TTGATA-TGTACCAGCCAATACAAGACTCTAACCACAGAA---TTCTGAGT--AAAACAAATAAGCA-------------------------------TTTAAA--AAAGCACCAATC------------------------------------ACAGAAAAATAGTCAC------TAGGAGT i otoGar3.GL873618 I 1 C 0 s canFam3.chr26 33147279 177 - 38964690 -ATCAAACTATACCAGCAAAATAAAAACT--AACCACAAAATTCTTCTCTGGGTGAAATACACAAGTGTAAACCCCTCCCTTACCATCTATATCTTTTTTTTTTT-TAAGATtttatttatttatttattcattcatGAGTGACATACCagagaggcagagataaaggcagagg---gagaagc i canFam3.chr26 C 0 I 180 s dasNov3.JH568189 823793 131 - 1116856 ACCTAAA-TGGAACAGCAAATGCAGAACTCTAACCACTGAATTCCTCTCCAGGTGGAATAAACAAGTGTGAAACCTAAC--------TCAAATGTGTTGTT---A-GAGGCTACTAATT------------------------------------GCAGAAAAATAGGCACTAAC--AAAAA-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9458413 249 - 31815103 I e mm10.chr5 124803409 227 + 151834684 I e proCoq1.NW_012154285v1 6707959 290 - 9870158 I a score=438612.000000 s hg38.chr12_KI270834v1_alt 52960 43 + 119498 CAATGGGGCAAAGG------------------------AGGGTGGGTGGGTTA-TTAAGCGTCTTGCA s panTro5.chr12 127339019 43 + 137163284 CAATGGGGCAAAGG------------------------AGGGTGGGTGGGTTA-TTAAGCGTCTTGCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689840 43 + 135337776 CAATGGGGCAAAGG------------------------AGGGTGGGTGGGTTA-TTAAGCGTCTTGCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203209 43 - 8369578 CAATGGGGCAAAGG------------------------AGGGTGGGTGGGTTA-TTAAGTGTCTTGCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851165 43 + 106955855 CAATGGGGCAAAGG------------------------AGGGTGGATTGGTTA-TTAAGCGCCTTGCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123976443 43 + 133663169 CAATGGGGCAAAGG------------------------AGGGTGGGTTGGTTA-TTAAGCACCTTGCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223826 43 + 137757926 CAATGGGGCAAAGG------------------------AGGGTGGGTTGGTTA-TTAAGCACCTTGCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10623263 43 - 16319837 CAATGGGGCAAAGG------------------------AGGGTGGGTTGGTTA-TTAAGCACCTTGCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12246239 43 + 20526591 CAATGGGGCAAAGG------------------------AGGGTGGGTTGGTTA-TTAAGCACCTTGCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218599 43 + 128539186 CAATGGGGCAAAGG------------------------AGGGTGGGTTGGTTA-TTAAGCGCCTTGCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 548311 43 + 6255621 CAATGGGGCAAAGG------------------------AGGGTGGGTTGGTTA-TTAAGCACCTTGCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594839 43 - 8658521 CAATGGGGCAAAGG------------------------AGGGTGGGTTGGTTA-TTAAGCGCCTTGCG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114798717 40 + 124281992 CAACA--GCCAAGG------------------------AGGGTGGTTCGGTTATTTAAGC--CTTGCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442928 40 - 9212255 CAACA-GGCCAAGG------------------------AGGGTGGGTCGGTTA-TTAAGC--CTTGCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857911 40 + 4466143 CAACA-GGCCAAGG------------------------AGTGTGGGTCGGTTA-TTAAGC--CTTGCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564533 40 + 5364348 CAACA-GGCCAAGG------------------------AGGGTGGGTCGGTTA-TTAAGC--CTTGCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4290064 42 + 7922563 CAACAGGG-AAAGG------------------------AGGGTGGGTTGGTTA-TTAAGTACCTTGTA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33147636 67 - 38964690 CAATTGGGGAAAAATACATTAATAGAAGTTGAAAGATTAGGGAGGGTGGATTA-TTACATACCTTGTA i canFam3.chr26 I 180 C 0 s dasNov3.JH568189 823924 39 - 1116856 TAAACAGGTAAAGG------------------------AGGATG----GATCA-CTAAGTCTCTTGTA i dasNov3.JH568189 C 0 I 217 e micMur3.chr21 9458413 249 - 31815103 I e mm10.chr5 124803409 227 + 151834684 I e proCoq1.NW_012154285v1 6707959 290 - 9870158 I a score=57299.000000 s hg38.chr12_KI270834v1_alt 53003 8 + 119498 GCAACTG-A s panTro5.chr12 127339062 8 + 137163284 GCAACTG-A i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689883 8 + 135337776 GCAACTG-A i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203252 8 - 8369578 GCAACTG-A i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851208 8 + 106955855 TCAACTG-A i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123976486 9 + 133663169 GCAACTGAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223869 9 + 137757926 GCAACTGAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10623306 9 - 16319837 GCAACTGAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12246282 8 + 20526591 GCAACTG-A i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218642 9 + 128539186 GCAACTGAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 548354 8 + 6255621 GCAACTG-A i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594882 9 - 8658521 GCAACTGAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114798757 7 + 124281992 GCAACTG-- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442968 7 - 9212255 GCAACTG-- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857951 7 + 4466143 GCAACTG-- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564573 7 + 5364348 GCAACTG-- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4290106 9 + 7922563 GCAATTGAG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33147703 8 - 38964690 GCAGTTG-G i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 824180 8 - 1116856 acaattg-g i dasNov3.JH568189 I 217 C 0 e micMur3.chr21 9458413 249 - 31815103 I e mm10.chr5 124803409 227 + 151834684 I e proCoq1.NW_012154285v1 6707959 290 - 9870158 I a score=364796.000000 s hg38.chr12_KI270834v1_alt 53011 33 + 119498 AAAAAAATAGAAC--------------------------------------------------------------------GCAAATTATTTTA--GATAATA- s panTro5.chr12 127339070 33 + 137163284 AAAAAAATAGAAC--------------------------------------------------------------------GCAAATTATTTTA--GATAATA- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689891 33 + 135337776 AAAAAAATAGAAC--------------------------------------------------------------------GCAAATTATTTTA--GATAATA- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203260 33 - 8369578 AAAAAAATAGAAC--------------------------------------------------------------------GCAAATTATTTTA--GATAATA- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851216 33 + 106955855 AAAAAAATAGAAT--------------------------------------------------------------------GCAAATTATTTTA--GATAATA- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123976495 33 + 133663169 AAAAAAATAGAAT--------------------------------------------------------------------GCAAATGATTTTA--GATAATA- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223878 33 + 137757926 AAAAAAATAGAAT--------------------------------------------------------------------GCAAATGATTTTA--GATAATA- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10623315 33 - 16319837 AAAAAAATAGAAT--------------------------------------------------------------------GCAAATGATTTTA--GATAATA- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12246290 33 + 20526591 AAAAAAATAGAAT--------------------------------------------------------------------GCAAATGATTTTA--GATAATA- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218651 33 + 128539186 AAAAAAATAGAAT--------------------------------------------------------------------GTAAATGATTTTA--GATAGTA- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 548362 33 + 6255621 AAAAAAATAGAAT--------------------------------------------------------------------GCAAATGATTTTA--GATAATA- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4594891 33 - 8658521 AAAAAAATAGAAT--------------------------------------------------------------------GCAAATGATTTTA--GATAATA- i colAng1.NW_012116043v1 C 0 I 340 s calJac3.chr9 114798764 32 + 124281992 -AAAAAATCGAAT--------------------------------------------------------------------GCAAATTGTTTTA--GATAATA- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 442975 32 - 9212255 -AAGAAATAGAAT--------------------------------------------------------------------GCAAATTGTTTTA--GATAATA- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2857958 32 + 4466143 -AAAAAATAGAAT--------------------------------------------------------------------GCAAATTGTTTTA--GATAATA- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564580 32 + 5364348 -AAAAAACAGAAC--------------------------------------------------------------------GCAAATTGTTTTA--GATAATA- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4290115 33 + 7922563 AAAAAAACCAAAT--------------------------------------------------------------------GCAAATTTGTTTA--GGTAATA- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124803636 103 + 151834684 AAAAAAATGAAACCAATGTAAACTAACATATTGCTTAGGATGCTCATGGCGGCAGGATAAGCGCCACTGGGGAGGGTCTAGGCAGATTTTCCCATTGATAACG- i mm10.chr5 I 227 C 0 s canFam3.chr26 33147711 24 - 38964690 ---AAAAAAGAAT--------------------------------------------------------------------------TACTTCA--GATAATC- i canFam3.chr26 C 0 I 3 s dasNov3.JH568189 824188 34 - 1116856 AAAAAAATTAGAT--------------------------------------------------------------------GCAAATTACTTCA--GATAATAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9458413 249 - 31815103 I e proCoq1.NW_012154285v1 6707959 290 - 9870158 I a score=18374.000000 s hg38.chr12_KI270834v1_alt 53044 3 + 119498 GTA- s panTro5.chr12 127339103 3 + 137163284 GTA- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689924 3 + 135337776 GTA- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203293 3 - 8369578 GTA- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851249 3 + 106955855 ATA- i nomLeu3.chr10 C 0 I 1 s rheMac8.chr11 123976528 3 + 133663169 ATA- i rheMac8.chr11 C 0 I 1 s macFas5.chr11 128223911 3 + 137757926 ATA- i macFas5.chr11 C 0 I 1 s macNem1.NW_012010578v1 10623348 3 - 16319837 ATA- i macNem1.NW_012010578v1 C 0 I 1 s cerAty1.NW_012001186v1 12246323 3 + 20526591 GCA- i cerAty1.NW_012001186v1 C 0 I 1 s chlSab2.chr11 119218684 3 + 128539186 ATA- i chlSab2.chr11 C 0 I 1 s manLeu1.NW_012103587v1 548395 3 + 6255621 ATA- i manLeu1.NW_012103587v1 C 0 I 1 s calJac3.chr9 114798796 3 + 124281992 ATA- i calJac3.chr9 C 0 I 1 s saiBol1.JH378194 443007 3 - 9212255 ATA- i saiBol1.JH378194 C 0 I 1 s cebCap1.NW_016107484v1 2857990 3 + 4466143 ATA- i cebCap1.NW_016107484v1 C 0 I 1 s aotNan1.NW_018491581v1 1564612 3 + 5364348 ATA- i aotNan1.NW_018491581v1 C 0 I 1 s otoGar3.GL873618 4290148 3 + 7922563 ATA- i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124803739 3 + 151834684 GCA- i mm10.chr5 C 0 C 0 s canFam3.chr26 33147738 3 - 38964690 GCA- i canFam3.chr26 I 3 C 0 s dasNov3.JH568189 824222 3 - 1116856 -GAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9458413 249 - 31815103 I e proCoq1.NW_012154285v1 6707959 290 - 9870158 I e colAng1.NW_012116043v1 4594924 340 - 8658521 I a score=443061.000000 s hg38.chr12_KI270834v1_alt 53047 42 + 119498 CGTATCCTCTGCTCCTAGCAAGTTTCAGGCCGTGTACTGTTG s panTro5.chr12 127339106 42 + 137163284 CGTATCCTCTGCTCCTAGCAAGTTTCAGCCCGTGTACTGTTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689927 42 + 135337776 CGTATCCTCTGCTCCTAGCAAGTTTCAGCCCGTGTACTGTTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203296 42 - 8369578 TGTATCCTCTGCTCCTAGCAAGTTTCAGCCCGTGTACTGTTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851253 42 + 106955855 TGTATCCTCTGTTCCTAACAAGTTTCAGCCCGTGTACTGTTG i nomLeu3.chr10 I 1 C 0 s rheMac8.chr11 123976532 42 + 133663169 TGTATCCTCTGTTCCTAACAAGTTTTAGCCCATGTACTGTTG i rheMac8.chr11 I 1 C 0 s macFas5.chr11 128223915 42 + 137757926 TGTATCCTCTGTTCCTAACAAGTTTTAGCCCATGTACTGTTG i macFas5.chr11 I 1 C 0 s macNem1.NW_012010578v1 10623352 42 - 16319837 TGTATCCTCTGTTCCTAACAAGTTTTAGCCCATGTACTGTTG i macNem1.NW_012010578v1 I 1 C 0 s cerAty1.NW_012001186v1 12246327 42 + 20526591 CGTATCCTCTGTTCCTAACAAGTTTTAGCCCATGTACTGTTG i cerAty1.NW_012001186v1 I 1 C 0 s chlSab2.chr11 119218688 42 + 128539186 CATATCCTCTGTTCCTAACAAGTTTTAGCCCATGTACTGTTG i chlSab2.chr11 I 1 C 0 s manLeu1.NW_012103587v1 548399 42 + 6255621 CGTATCCTCTGTTCCTAACAAGTTTTAGCCCATGTACTGTTG i manLeu1.NW_012103587v1 I 1 C 0 s colAng1.NW_012116043v1 4595264 40 - 8658521 CGTATCCTCTGTTCCTAACAAGTTTTAGCTCGTGTACTGT-- i colAng1.NW_012116043v1 I 340 C 0 s calJac3.chr9 114798800 42 + 124281992 TGTATCCTCTTTTCCTAACAAGTTTTAGCTTGTGAACCGTTG i calJac3.chr9 I 1 C 0 s saiBol1.JH378194 443011 42 - 9212255 TGTATCCTCTTCTCCTGATGAGTCTTAGCTTGTGAACTGTTG i saiBol1.JH378194 I 1 C 0 s cebCap1.NW_016107484v1 2857994 42 + 4466143 TGTATCCTCTTTTCCTAACGAGTTTTAGCTTGTGAACTGTTA i cebCap1.NW_016107484v1 I 1 C 0 s aotNan1.NW_018491581v1 1564616 42 + 5364348 TGTATCCTCTTTTCCTGACGAGTTTTAGCTTGTGAACTCTTC i aotNan1.NW_018491581v1 I 1 C 0 s otoGar3.GL873618 4290152 42 + 7922563 TGTAAACTCTTTTCCTGACAAGTTTTAGTGCATACGTTATTG i otoGar3.GL873618 I 1 C 0 s mm10.chr5 124803742 32 + 151834684 --AAGTCTCTTTTCCTGCCAAATGTATGC-----AACCA--- i mm10.chr5 C 0 C 0 s canFam3.chr26 33147741 40 - 38964690 TGTGTTCTTT-TTTCTCATGAGTTTTAGCACATATA-TGTTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 824225 41 - 1116856 CATATGTTCTTTTCCTAACAAGTTTTAGCAAACATA-TGTTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9458413 249 - 31815103 I e proCoq1.NW_012154285v1 6707959 290 - 9870158 I a score=351871.000000 s hg38.chr12_KI270834v1_alt 53089 27 + 119498 --TTGAGTTT-GGGTCCTTAAGTGGGCTTC s panTro5.chr12 127339148 27 + 137163284 --TTGAGTTT-GGGTCCTTAAGTGGGCTTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689969 27 + 135337776 --TTGAGTTT-GGGTCCTTAAGTGGGCTTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203338 27 - 8369578 --TTGAGTTT-GGGTCCTTAAGTGGGCTTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851295 27 + 106955855 --TTGAGTTT-GGGACCTTAAGTGGGCTTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123976574 27 + 133663169 --TTGAGTTT-GGGTCCTTAAGTGGGCGTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223957 27 + 137757926 --TTGAGTTT-GGGTCCTTAAGTGGGCGTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10623394 27 - 16319837 --TTGAGTTT-GGGTCCTTAAGTGGGCGTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12246369 27 + 20526591 --TTGAGTTT-GGGTCCTTAAGTGGGTGTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218730 27 + 128539186 --TTGAGTTT-GGGTCCTTAAGTGGGCATC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 548441 27 + 6255621 --TTGAGTTT-GGGTCCTTAAGTGGGCGTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4595304 27 - 8658521 --TTGAGTTC-GGGTCCTTAAGTGGGCTTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114798842 27 + 124281992 --TTGAGTTT-GGGGCCTTAAGTGGGCTTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 443053 27 - 9212255 --TTGAGTTT-GGGGCCTTAAGTGGGCTTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2858036 27 + 4466143 --TTGAGTTT-GCGGTCTTAAGTGGGCTTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564658 27 + 5364348 --TTGAGTTT-GGGGCCTTAAGTAGGCTTC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9458662 27 - 31815103 --TTGAGTTT-GGGTCCTTTAATGGTCTTG i micMur3.chr21 I 249 C 0 s otoGar3.GL873618 4290194 28 + 7922563 --TTGAGTTTGGGGTCCTTAAGGGGGCTTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124803774 20 + 151834684 ---------T-GGACCTGTCTGTGGACCTT i mm10.chr5 C 0 I 10 s canFam3.chr26 33147781 27 - 38964690 --TTGAGTTT-GGGTCCTTAAATGATCTTC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 824266 26 - 1116856 TTACACATTT-AGACC---AAGCGGTCTTA i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6707959 290 - 9870158 I a score=3336083.000000 s hg38.chr12_KI270834v1_alt 53116 179 + 119498 TGTTTCAAGGTACAACAGCACATAGGCAGCTTGGTTGTGGAACATTTTAAAGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCAGATGGCTCTGCACGAAGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTCCAGGT s panTro5.chr12 127339175 179 + 137163284 TGTTTCAAGGTACAACAGCACATAGGCAGCTTGGTTGTGGAACATTTTAAAGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCAGATGGCTCTGCACGAAGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTCCAGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125689996 179 + 135337776 TGTTTCAAGGTACAACAGCACATAGGCAGCTTGGTTGTGGAACATTTTAAAGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCAGATGGCTCTGCACGAAGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTCCAGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203365 179 - 8369578 TGTTTCAAGGTACAACAGCACATAGGCAGCTTGGTTGCAGAACATTTTAACGATGACTTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCAGATGGCTCTGCACGAAGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTTTGTTCCAGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851322 179 + 106955855 TGTTTCAAGGTACAACAGCACATAGGCGGCTTGGTTACGGAACATTTTAACGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCGGATGGCTCTGCACGAAGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTCCAGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123976601 179 + 133663169 TGTTTCAAGGTACAACAGCACTTAGGTGATTTGGTTACGGAACATTTTAACGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCGGATGGCTCTGCATGAGGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTTCAGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128223984 179 + 137757926 TGTTTCAAGGTACAACAGCACTTAGGTGATTTGGTTACGGAACATTTTAACGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCGGATGGCTCTGCACGAGGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTCCAGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10623421 179 - 16319837 TGTTTCAAGGTACAACAGCACTTAGGTGATTTGGTTACGGAACATTTTAACGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCGGATGGCTCTGCACGAGGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCAGCCAAGGCTCTGTTCCAGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12246396 179 + 20526591 TGTTTCAAGGTACAACAGCACTTAGGTGATTTGGTTACGGAACATTTTAACGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCGGATGGCTCTGCACGAGGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTCCAGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218757 179 + 128539186 TTTTTCAAGGTACAACAGCACTTAGGTGATTTGGTTACGGAACATTTTAACGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCGGATGGCTCTGCACGAGGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTCCAGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 548468 179 + 6255621 TGTTTCAAGGTACAACAGCACTTAGGTGATTTGGTTACGGAACATTTTAACGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCGGATGGCTCTGCACGAGGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTCCAGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4595331 179 - 8658521 TGTTTCAAGGTACAACAGCACTTAGGTGATTTGGTTACGGAACATTTTAACGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCGGATGGCTCTGCACGAGGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCAGCCAAGGCTCTGTTCCAGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114798869 179 + 124281992 TATTTCAAGGTACAAGAGCACATAGGCAGCTTGGTTACGGAACATTTTAACGATGACGTGGAGGTGGTGATGAGGAATCCCGTATTGTTTGGAGACTTCCGAATGGCCCTGCAGGAAGGAGAACCGCGCCTTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTCCAGGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 443080 179 - 9212255 TGTTTCAAGGTACAAGAGCACATAGGTGGCTTGGTTATGAAACATTTTAACGATGACGTGGAGGTGGTGATGAGGAATCCCATATTGTTTGGAGACTTCCGAATGGCCCTGCACGAAGGAGAACCGCGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTCCAGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2858063 179 + 4466143 TGTTTCAAGGTACAAGAGCACATAGGCGGCTTGGTTACGGAACATTTTAACGATGACGTGGAGGTGGTGATGAGGAATCCCATATTGTTTGGAGACTTCCGAATGGCCCTGCACGAAGGAGAACCGCGCATTTATGAAGACATCCAGGACTACGAGGCAGCCAAGGCTCTGTTCCAGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564685 179 + 5364348 TGTTTCAAGGTCCAGGAGCACATAGGCGGCTTGGTTACGGAACATTTTAACGATGACGTGGAGGTGGTGATGAGGAATCCCATATTGTTTGGAGACTTCCGAATGGCCCTGCACGACGGAGAACCGCGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAGGGCTCTGCTCCAGGT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9458689 179 - 31815103 TGTTTTAAGGTGCAAGACCACATAAGAAGCTTGGTGACGGAACATTTTCCCGACGACCTGGAGACGGTGATGAGGGACCCCATACTGTTCGGAGACTTCCGGATGGCCCTGCACGAGGAGGAGCCGCGTGTGTACGAAGACATCCAGGACTACGAGGCGGCCAAGGCGCTGTTCCAGGT i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6708249 179 - 9870158 TGTTTTAAGGTACAAGAGCACATAAGAAGCTTGGTCACGGAACATTTTACCGATGACTTGGAGACGGCGATGAGGGATCCCATACTGTTCGGAGACTTCCGGATGGCTCTGCACGAAGGGGAGCCACGTGTGTACGAAGACATCCAGGACTACGAGGCGGCCAAGGCCCTGTTCCAGGT i proCoq1.NW_012154285v1 I 290 C 0 s otoGar3.GL873618 4290222 179 + 7922563 TGTTTTAAGGTACAAGAGTACATAAGAAGCTTGGTTATGGAGCATTTTAATGATGAATTGGAGACAGTGATGAGAGATCCCATACTGTTTGGAGACTTCCGGATGGCTCTGCATGACGAGGAGCCACGCATTTATGAAGACATCCAAGACTACGAGGCGGCCAAGGCTCTATTCCAGGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124803804 179 + 151834684 TGCTTCAAGGTGCAAAATCACATAGGGAACTTGGTGACGGAGCATTTTAACGATGACTTCGAGATGGTGATGAGGGATCCCATCCTGTTCGGGGACTTCCGGTTGGCTCTGCAAGAGGGGGAGCCACGCATTTATGAAGACATCCAGGACTACGAGGCCGCCAAGGCACTGTTTGAGGT i mm10.chr5 I 10 I 498 s canFam3.chr26 33147808 179 - 38964690 TGTCAAAAGGTACAAGACCACATAAGAGACTTGGTTATGGAACATTTTAACGATGATGCAGAGGTGGTGATGAGGGATCCCATCCTGTTTGGAGACTTCCGGATGGCCCTGCAAGAAGAGGAAACACGCATTTATGAAGACATCCAGGATTATGAGGCAGCCAAGGCCTTGTTTCAGGT i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 824292 179 - 1116856 TATTTTAAGGTACAAGACCACATCAGAAATTTGGTTGCAGAGCATTTTAACGATGACTTGGAGGTAGTGATGAGGAACCCTATACTGTTTGGAGACTTCCGGATGGCTCTGCACGAAGAGGAAGCGCGCATTTATGAAGACATTCAGGACTACGAGGCGGCCAAGGCTCTGTTTCAGGT i dasNov3.JH568189 C 0 C 0 a score=19000.000000 s hg38.chr12_KI270834v1_alt 53295 1 + 119498 G s panTro5.chr12 127339354 1 + 137163284 G i panTro5.chr12 C 0 C 0 s panPan2.chr12 125690175 1 + 135337776 G i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203544 1 - 8369578 G i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851501 1 + 106955855 G i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123976780 1 + 133663169 G i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128224163 1 + 137757926 G i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10623600 1 - 16319837 G i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12246575 1 + 20526591 G i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218936 1 + 128539186 G i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 548647 1 + 6255621 G i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4595510 1 - 8658521 G i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799048 1 + 124281992 G i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 443259 1 - 9212255 G i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2858242 1 + 4466143 G i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564864 1 + 5364348 G i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9458868 1 - 31815103 G i micMur3.chr21 C 0 I 516 s proCoq1.NW_012154285v1 6708428 1 - 9870158 G i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4290401 1 + 7922563 G i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 824471 1 - 1116856 G i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124803983 498 + 151834684 I e canFam3.chr26 33147987 1 - 38964690 I a score=196868.000000 s hg38.chr12_KI270834v1_alt 53296 15 + 119498 GGGATGAGCCCCACC s panTro5.chr12 127339355 15 + 137163284 GGGATGAGCCCCACC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125690176 15 + 135337776 GGGATGAGCCCCACC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203545 15 - 8369578 GGGATGAGCCCCACC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851502 15 + 106955855 GGGATGAGCCCCACC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123976781 15 + 133663169 GGGATGAGCCCCACC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128224164 15 + 137757926 GGGATGAGCCCCACC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10623601 15 - 16319837 GGGATGAGCCCCACC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12246576 15 + 20526591 GGGATGAGCCCCACC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218937 15 + 128539186 GGGATGAGCCCCACA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 548648 15 + 6255621 GGGATGAGCCCCACC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4595511 15 - 8658521 GGGATGAGCCCCACC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799049 15 + 124281992 GGGACGAGCTCCACC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 443260 15 - 9212255 GGGACGAGCTCCACC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2858243 15 + 4466143 GGGACGAGCTCCACC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564865 15 + 5364348 GGGACAAGGTCCACC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6708429 15 - 9870158 TGGACGGGCCTCACC i proCoq1.NW_012154285v1 C 0 I 414 s otoGar3.GL873618 4290402 15 + 7922563 TGGAAGAGCCTCACC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33147988 15 - 38964690 TAGATGGCGTTTACC i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 824472 15 - 1116856 TGGGCGGGGCTCACC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124803983 498 + 151834684 I a score=2659448.000000 s hg38.chr12_KI270834v1_alt 53311 270 + 119498 CTGTCCATGGGCTCACTTTCTC-CTGAGCAT--GGGCCAAGC-GGGAGCTGAGCATCGCGCGGGTGCCCGGGAGCC-----------TATCACCTGGGGC-TCTGTCTGAGGGCTTGAAAT-ACGGGCTTGTGTCTGGTCCGGTGGTTCCC--ACATCCA-----GCA-TGCTTGGGAGTGAC-GTTAGGAAATTGTT--------AGACTCCT-GGGGCC--AC---CCCGTGAGATTTGCTGCGCTGGGCCCATGGAGGGtccccagattctggtgcacagccaggtttgggaaccactTGTTTGACT- s panTro5.chr12 127339370 270 + 137163284 CTGTCCATGGGCTCACTTTCTC-CTGAGCAT--GGGCCAAGC-GGGAGCTGAGCATCGCGCGGGTGCCCGGGAGCC-----------TAACACCTGGGGC-TCTGTCTGAGGGCTTGAAAT-ATGGGCTTGTGTCTGGTCCGGTGGTTCCC--ACATCCA-----GCA-TGCTTGGGAGTGAC-GTTAGGAAATTGTT--------AGACTCCT-GGGGCC--AC---CCCGTGAGATTTGCTGCGCTGGGCCCATGGAGGGTCCCCGgattctggtgcacagccaggtttgggaaccactTGTTTGACT- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125690191 270 + 135337776 CTGTCCATGGGCTCACTTTCTC-CTGAGCAT--GGGCCAAGC-GGGAGCTGAGCATCGCGCGGGTGCCCGGGAGCC-----------TAACACCTGGGGC-TCTGTCTGAGGGCTTGAAAT-ATGGGCTTGTGTCTGGTCCGGTGGTTCCC--ACATCCA-----GCA-TGCTTGGGAGTGAC-GTTAGGAAATTGTT--------AGACTCCT-GGGGCC--AC---CCCGTGAGATTTGCTGCGCTGGGCCCATGGAGGGTCCCCGgattctggtgcacagccaggtttgggaaccactTGTTTGACT- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203560 270 - 8369578 CTGTCCATGGGCTCACTTTCTC-CTGAGCAT--GGGCCAAGT-GGGAGCTGAGCATCGCGCGGGTGCCC-GGAGCC-----------TAACACCTGGGGC-TCTGTCTGAGGGCTTGAAATAATGGGCTTGTGTCTGGTCCGGTGGTTCCC--ACATCCA-----GCA-TGCTTGGGAGTGAC-GTTAGGAAATTGTT--------AGACTCCT-GGGGCC--AC---CCCGTGAGATTTGCTGCGCTGGGCCCATGGAGGGTCCCCGgattctggtgcacagccaggtttgggaaccactTGTTTGACT- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851517 268 + 106955855 CTGTCCGTGGGCTCACTTTCTC-CTGAGCAT--GGGCCAAGC-GGGAGCTGAGCATTGCGCGGGTGCCCAGGAGCC-----------TAACACCTGTGGC-TCTGTCTGAGGGCTTGAAAT-ACAGGCTTGTGTCTGGTCCGGTGGTTCCC--ACATCCA-----GCA-TGCTTGGGAATGAC-GTTAGGAAATTGTT--------AGACTCCT-GGGGCC--AC---CCCGTGAGATTT-CTGCGCTGGGCCCATGGA-GGTCCCCGGATTCTGGCACACAGCCAGGTTTGGGAACCACGTGTTTGACT- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123976796 272 + 133663169 CTGTCCATGGGCTCGCTTTCTC-CTGAGCAT--GGGCCAAGC-AGGAGCTGAACATGGCGTGGGTGCCCAGGAGCC-----------TAACGCCTGTGGC-TCTGTCTGAGGGCTTGAAAT-ACGGACTTGTGTCTGGTCcagtggttccc--acatcca-----gca-tgcttgggagtgac-gttaagaaattgttaa----acagactcct--gggct--ac---cccgtgagatttgctgcactggatccatggagggtcccca-attctggtgcacagccaggtttgggaaccactTGTTTGACT- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128224179 272 + 137757926 CTGTCCATGGGCTCGCTTTCTC-CTGAGCAT--GGGCCAAGC-AGGAGCTGAACATGGCGTGGGTGCCCAGGAGCC-----------TAACGCCTGTGGC-TCTGTCTGAGGGCTTGAAAT-ACGGACTTGTGTCTGGTCcagtggttccc--acatcca-----gca-tgcttgggagtgac-gttaagaaattgttaa----acagactcct--gggct--ac---cccgtgagatttgctgcactgggtccatggagggtcccCA-ATTCTGGTGCACAGCCAGGTTTGGGAACCACTTGTTTGACT- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10623616 272 - 16319837 CTGTCCATGGGCTCGCTTTCTC-CTGAGCAT--GGGCCAAGC-AGGAGCTGAACATGGCGTGGGTGCCCAGGAGCC-----------TAACGCCTGTGGC-TCTGTCTGAGGGCTTGAAAT-ACGGACTTGTGTCTGGTCcagtggttccc--acatcca-----gca-tgcttgggagtgac-gttaagaaattgttaa----acagactcct--gggct--ac---cccgtgagatttgctgcactgggtccatggagggtcccca-attctggtgcacagccaggtttgggaaccactTGTTTGACT- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12246591 272 + 20526591 CTGTCCGTGGGCTCGCTTTCTC-CTGAGCAT--GGGCCAAGC-GGGAGCTGAACATGGCGTGGGTGCCCAGGAGCC-----------TAACACCTGTGGC-TCTGTCTGAGGGCTTGAAAT-ACGGACTTGTGTCTGGTCTGgtggttctc--atatcca-----gca-tgcttgggagtgac-gttaggaaattgttaa----acagactcct--aggcc--ac---cccgtgagatttgctgtgctgggtccatggagggtcccca-attctggtgcacagccaggtttgggaaccactTGTTTGACT- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119218952 272 + 128539186 CTGTCCGTGGGCTCACTTTCTC-CTGAGCAT--GGGCCAAGC-GGGAGCTGAACATGGCATGGGTGCCCAGGAGCC-----------TAACACCTGTGGC-TCTGTCTGAGGGCTTGAAAT-ACGGACTTGTATCTGGTCcggtggttccc--acatcca-----gca-tgcttgggagtgac-gttaggaaattgttaa----acagactcct--gggcc--ac---cctgtgagatttgctgcgctgggtccatggagggttccca-gTTCTGGTGCACAGCCAGGTTTGGGAACCACTTGTTTGACT- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 548663 272 + 6255621 CTGTCCGTGGGCTCGCTTTCTC-CTGAGCAT--GGGCCAAGC-GGGAGCTGAACGTGGCGTGGGTGCCCAGGAGCC-----------TAACACCTGTGGC-TCTGTCTGAGGGCTTGAAAT-ACGGACTTCTGTCTGGTCCGGTGGTGCCC--ATATCCA-----GCA-TGCTTGGGAGTGAC-GTTAGGAAATTGTTAA----ACAGACTCCT--GGGCC--AC---CCCGTGAGATTTGCTGCGCTGGGTCCATGGAGGGtcccca-gttctggtgcacagccaggtttgggaaccactTGTTTGACT- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4595526 273 - 8658521 TTGTCCGTGGGCTCGCTTTCTC-CTGAGCAT--GGGCCAAGC-GGGAGCTGAACATTGCGTGGGTGCCCAGGAACC-----------TAACACCTGTGGC-TCTGTCTGAGGGCTTGAAAT-GCGGACTTGTGTCTGGTCCGGTGGTTCCC--ACATCCA-----GCA-TGCTTGGGAGTGAC-GTTAGGAAATTGTTGA----ACAGACTCCT-GGGGCC--AC---CCCATGAGATGTGCTGTGCTGGGTCCATGGAGGGtccccg-attctagtgcacagccaggtttgggaaccactTGTTTGACT- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799064 249 + 124281992 CTGTCCGCGGGCTCGCTT---------GCGT--GGGCCAAGCAGGGAGCTGAGCATTGCATTGGTGCCCAGGAG---------------------------CCTGTCTGAGGGCTTGAAAT-ACAGGCTTATGTCTTGTCCAGTGACCCCCCGACATCTA-----GCA-TGCTCGGGAGTGAC-GTTAGGGAACTGTTAA----ACGGACTCCT--GGGCC--AG---CCCAGGAGACTTGCT----CAGGCCCATGGAGGGTCCCCGGATTCTGGTGCACAGCCAGGTGTGGGAACCACTTGTTTGACT- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 443275 261 - 9212255 CTGTCTGTGGGCTCGCTT---------GCGT--GGGCCAAGCGGGGAGCTGAGCATTGCATGGGTGCCCAGGAGCC-----------TAACACGCATGGCTCCTGTCGGAGGGCTTGAAGT-CCAGGCTTATGTCTTGTCCGATGACCACCC-ACATCTA-----GCA-TGCCTGGGAGTGAC-GTTAGGAAAC--TTAA----GCGGACTCCT--GGGCC--AC---TCCGGGAGGCTTGCT----CGGGCCCACGGAGGG-CCCTGGATTCTTGTGCACAGCCAGGTTTGGGAACCACTTGTTTGACT- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2858258 262 + 4466143 CTGTCCGCGGGCTCGCTT---------GCGT--GGGCCAGGCGGGGAGCTGAGCATTGCATGGGTGCCCAGGAGCC-----------TAACATGCATGGCTCCTGTCTGAGGGCTTGAAAT-ACAGGCTTATGTCTTGTCCAATGAACCCCC-ACATCCA-----GCA-TGCTCGGGAGTGAC-GTTAGGAAAC--TTAA----ATGGACTCCT--GGGCC--AC---CCCGGGAGACTTGCT----CGGGCCCACGGAGGGTCCCCGGATTCTTGTGCACAGCCAGGTTTGGAAACCGCTTGTTTGACT- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1564880 264 + 5364348 CTGTCCGCGGGCTCACTT---------GTGT--GGGCCAAACAGGGAGCTGAGCATTGCACGGGTGCCCAGGAGCC-----------TAACACGAGTGGCTCCTGTCTGAGGGCTTGAAAT-ACAGGCTTATGTCTTGTCCAATGACCCCCC-ACATCCA-----GTA-TGTTCAGGAGTGAC-GTTAGGAAACTGTTAA----ATGGACTCCT--GGGCC--AC---CCCGGGAGACTTGCT----CGGGCCCACGGAGGGTCCCTGgattctggtgcacagccaggtttgggaaccactTGTTTGACT- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4290417 283 + 7922563 TTCTCCCTGGGCTCCTACCCTCTCGGAGTAT--GAGCCAAGTGGGGGGCCAAGCCCTGAGTGGGTGCTCAGGAGTG-----------TGATGCCTGTGGT-TCTTCCTCAGGGGTC-AGAT-GTAGGCTTGTGTCAGACCTACTGGTTCCC--ACATCCAGGGGTGCA-TACCTATGACCCACAGTCAGGAATCTGTTAA--TCCCAGACTCCTCTGGTAT--AC---CCCCTGTGGTTCACTTGACCAGGCCAACAGAGGGTCCCTGGGTTCTGATGCATAGCTGGGTTTGGGGA-CACTCATCTGATT- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33148003 286 - 38964690 TTCTCCATAGGCTCACTT-TTC-CTGGGCGT--GCTTCTCAG-GGGAGTCAAGCAGTGCA-GGGTGCTCAGGAGGCAGAGCTGGGAAGAATACCCATGCC-TCTGTCTCAAGGTTCAGAAT-GTAGGTTTGTGTCCAGG--Ggtgattatc--acgtccag----ggg-tgcatagaaa-gac-ctgaagaatgtgttaaacacatggacccct--gggcttgcc---actctgagtttcCTTCCTTCAAGTCCATGTCAGGTCCCAGGGTTCCAAAGCACAGTCAGGTTTGGGAACCACTCAGCTGACT- i canFam3.chr26 C 0 I 186 s dasNov3.JH568189 824487 281 - 1116856 TTTTCGAAGGGCAC-CTTCCTC-CTGGGTGTGGGGGCCAAGC-GGGGACTGGGTGTTGGG-AGGTGCCCGCGAGGTAGAAGCAAGTAGAGTACCTATGCT-TCCGTCTCAGGGTTTGAAAT-ATGGGC-TGTGCCTGACCCAGGGACCCCC--ACCTCCA-----GGAGCGCCTCCAGATGAT-CCAGGCAGCTTGTTAA----ACG---TCCT--GGGGC--CCATGCCTCTGAGGTTCACCTCATCGGGTATATGGAGGGTCCCAGGATTCTGACGCACA----GATTTGGGAATCGCTAGTCTGATCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124803983 498 + 151834684 I e proCoq1.NW_012154285v1 6708444 414 - 9870158 I a score=1316712.000000 s hg38.chr12_KI270834v1_alt 53581 111 + 119498 CCCTAATATTCATTTTCATTTAAATTCATGAGATGAGCC-TTGTTACCGGCTTTGGGTCGCTGCTGGCCAATCAAAGCCCAGCAGATGGAAATCTCGATTGTGAAAGCTAGA s panTro5.chr12 127339640 111 + 137163284 CCCTAATATTCATTTTCATTTAAATTCATGAGATGAGCC-TTGTTACCGGCTTTGGGTCGCTGCTGGCCAATCAAAGCCCAGCAGATGGAAATCTCGATTGTGAAAGCTAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125690461 111 + 135337776 CCCTAATATTCATTTTCATTTAAATTCATGAGATGAGCC-TTGTTACCGGCTTTGGGTTGCTGCTGGCCAATCAAAGCCCAGCAGATGGAAATCTCGATTGTGAAAGCTAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203830 111 - 8369578 CCCTAATATTCATTTTCATTTAAATTCATGAGATGAGCC-TTGTTACCGGCTTTGGGTCGCTGCTGGCCAATCAAAGCCCAGCAGATGGAAATCTCGATTGTGAAAGCTAGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851785 111 + 106955855 CCCTAATATTCGTTTTCTTTTAAATTCATGAGATGAGCT-TTGTTACCTGCTTTGGGTCGCTGCTGGCCAATCAAAGCCCAGCAGATGGAAATCTCGATTGTGAAAGCTAGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123977068 109 + 133663169 CCCTGATATTCA-TTTCATTT-AATTCATGAGATGAGCC-TTGTTACCTGCTTTGGGTCGCTGCTGGCCAGTCAAAGCCCATCAGATGAAAATCTTGATTGTGAAAGCTAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128224451 109 + 137757926 CCCTGATATTCA-TTTCATTT-AATTCATGAGATGAGCC-TTGTTACCTGCTTTGGGTCGCTGCTGGCCAGTCAAAGCCCATCAGATGAAAATCTTGATTGTGAAAGCTAGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10623888 109 - 16319837 CCCTGATATTCA-TTTCATTT-AATTCATGAGATGAGCC-TTGTTACCTGCTTTGGGTCGCTGCTGGCCAGTCAAAGCCCATCAGATGAAAATCTTGATTGTGAAAGCTAGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12246863 109 + 20526591 CGCTGATATTCA-TTTCATTT-AATTCATGAGATGAGCC-TTGTTACCTGCTTTAGGTCGCTGCTGGCCAGTCAAAGCCCAGCAGATGGAAATCTTGATTGTGAAAGCTAGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119219224 109 + 128539186 CCCTGATATTCA-TTTCATTT-AATTCATGAGATGAGCC-TTGTTACCTGCTTTGGGTCGCTGCTGGCCAGTCAAAGCCCAGCAGATGGAAATCTTGATTGTGAAAGCTAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 548935 109 + 6255621 CCCTGATATTCA-TTTCATTT-AATTCATGAGATGAGCC-TTGGTACCTGCTTTGGGTCGCTGCTGGCCAGTCAAAGCCCAGCAGATGGAAATCTTGATTGTGAAAGCTAGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4595799 110 - 8658521 CCCTGATATTCATTTTCATTT-AATTCATGAGATGAGCC-TTGTTGCCTGCTTTGGGTCACTGCTGGCCAGTCAGAACCCAGCAGATGGAAATCTTGATTGTGAAAGCTAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799313 111 + 124281992 CCCTAACACTCATTTTCATTCAAATTCATGAGATGAGCC-TTGTTACCTGCTTTGGGTCGCTGCTGGCCAATCAAAGCCCCGCAGATGGAAATCTCGATTGTGAAAGCTAGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 443536 111 - 9212255 CCCTAATATTCGTTTTCATTCAAATTCATGAGATGAGCC-TGGCTACCTGCTTTGGGTTGCTGCTGGCCAATCAAAGCCCAGCAGATGGAAATCTCGATTGTGAAGGCTAGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2858520 111 + 4466143 CCCTAATATTCATTTTCATTCAAATTCACGAGATGAGCC-TTGTTACCTGCTTTGGGTCGCTGCTGGCCAATCAAAGCCCAGCAGATGGAAATCTCGATTGTGAAAGCTAGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1565144 110 + 5364348 CCCTAATATTCATTTTCATTCAAATTCATGAGATGAGCC-TTGTTACCTGCTTTGGGTCACTGCTGGCCAATCAAAGCCTAGCAGATGGAAATCTCGATTTGGAAAG-TAGA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4290700 112 + 7922563 CTCTTATGTTCATTTACATTGAAATTCATGAGATTATTCAGCATAATCTGCTGTCGCTTGTGGCTGGCCCATCAAAACCCAGCAGATCAAAATCTTGATTGTGAAAGCCAGA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33148475 97 - 38964690 CTCTGATATTTATTTTCATTTTAACTCATGACTTGAACC-T--------------GCTCACTGCAGGCCGATCACAAGCCAAGAGATCAAAACCTTAACTGTCAACACTAGA i canFam3.chr26 I 186 C 0 s dasNov3.JH568189 824768 111 - 1116856 CCCTAATGCTCATTTTTATTTTTATTAATGAGCTGAGCC-ATGGAGTTTGTTTTGGCCTGCTGTTGACCAGTCAAAGGATAGCAGATGAAAACCTTCATTTTGAAAGCTAGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124803983 498 + 151834684 I e proCoq1.NW_012154285v1 6708444 414 - 9870158 I a score=516655.000000 s hg38.chr12_KI270834v1_alt 53692 44 + 119498 TTAGTCCTGGAGACCCAAGC-AGTTTAATTATT--TTAACTACTATA s panTro5.chr12 127339751 44 + 137163284 TTAGTCCTGGAGACCCAAAC-AGTTTAATTATT--TTAACTACTATA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125690572 44 + 135337776 TTAGTCCTGGAGACCCAAAC-AGTTTAATTATT--TTAACTACTATA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203941 44 - 8369578 TTAGTCCTGGAGACCCAAAC-AGTTTAATTATT--TTAACTACTATA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851896 44 + 106955855 TTAGTCCTGGAGACCCAAAC-AGTTTAATTATT--TTAACTACTATA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123977177 44 + 133663169 TTAATCTCGGAGACCCAAAC-AGTTTAATTATT--TTAACTACTGTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128224560 44 + 137757926 TTAATCTCGGAGACCCAAAC-AGTTTAATTATT--TTAACTACTGTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10623997 44 - 16319837 TTAATCTCGGAGACCCAAAC-AGTTTAATTATT--TTAACTACTGTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12246972 44 + 20526591 TTAATCTCCGAGACCCAAAC-AGTTTAATTATT--TTAACTACTGTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119219333 44 + 128539186 TTAATCTCGGAGACCCAAAC-AGTTTAATTATT--TTAACTACTGTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 549044 44 + 6255621 TTAATCCCCGAGACCCAAAC-AGTTTAATTATT--TTAACTACTGCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4595909 44 - 8658521 TTAATCTCAGAGACCCAAAC-AGTTTAATTATT--TTAACTACTGTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799424 44 + 124281992 TTAGTCCCAGAGACCCAAGC-AGTTTAATTATT--TTAACTACTATA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 443647 40 - 9212255 TTAGTCCCAGAGACACAAAC-AGT----TTATT--TTAGCTACTGTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2858631 44 + 4466143 TTAGTCCCAGAGACACAAAG-AGTTTAATTATT--TTAACTACTATA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1565254 43 + 5364348 TCAGTCCCAGAGAC-CAAAC-AGTTTAATTATT--TTAACTACTATA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4290812 44 + 7922563 TGAATCCTGTAGACACAAAA-GATTTAATTATT--TCAACTACCGTA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124804481 45 + 151834684 TTAGTTCCTG-GCCCCACAC-ATCTTAAGGATTGCCTTACTTCCTTA i mm10.chr5 I 498 I 6 s canFam3.chr26 33148572 45 - 38964690 TTAGTCCTGTAAACCTAAATGATTTTAATTATT--TCAACTGCTATA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 824879 44 - 1116856 ATAGTCTCATCAATCTAACT-GATTTAGTTATT--TCAGTTACTAGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9458869 516 - 31815103 I e proCoq1.NW_012154285v1 6708444 414 - 9870158 I a score=507658.000000 s hg38.chr12_KI270834v1_alt 53736 38 + 119498 -GATG-TTCAGA---AAAATCTCTCTTCCATTCTTAATCTCCT s panTro5.chr12 127339795 38 + 137163284 -GATG-TTCAGA---AAAATCTCTCTTCCATTCTTAATCTCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125690616 38 + 135337776 -GATG-TTCAGA---AAAATCTCTCTTCCATTCTTAATCTCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8203985 38 - 8369578 -GATG-TTCAGA---AAAATCTCTCTTCCATTCTTAATCTCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851940 38 + 106955855 -GATG-TTCAGA---AAAATCTCTCTTCCATTCTTAATCTCCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123977221 38 + 133663169 -GATG-TTCAGA---AAAATCTCTCTTCCGTTCTTAATCTCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128224604 38 + 137757926 -GATG-TTCAGA---AAAATCTCTCTTCCGTTCTTAATCTCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10624041 38 - 16319837 -GATG-TTCAGA---AAAATCTCTCTTCCGTTCTTAATCTCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12247016 38 + 20526591 -GATG-TTCAGA---AAAATCTCTCTTCCATTCTTAATCTCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119219377 38 + 128539186 -GATG-TTCAGA---AAAATCTCTCTTCCGTTCTTAATCTCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 549088 38 + 6255621 -GATG-TTCAGA---AAAATCTCTCTTCCATTCTTAATCTCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4595953 38 - 8658521 -GATG-TTCAGA---AAAATCTTTCTTCCATTCTTAATCTCCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799468 38 + 124281992 -CATG-TTCAGA---AAAATCTCTCTTCCATAGTTAATCTCCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 443687 38 - 9212255 -GATG-TTCAGA---AAAATCTCTCTTCCATTGATAATCTCCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2858675 38 + 4466143 -GATG-TTCAGA---AAAACCTCTCTTCCATTGTTAATCTCCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1565297 37 + 5364348 -GATA-TTCAG----AAAATCTCTCTTCCATTGTTAATCTCCT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6708858 38 - 9870158 -GATG-TTCAGA---AAACTGTCTCCTCCGTTCTTAATCTCCT i proCoq1.NW_012154285v1 I 414 I 50 s otoGar3.GL873618 4290856 35 + 7922563 -GATG----GAA---AAAATCTCACCTCCATTCTTAATCTCTC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124804532 34 + 151834684 -GGTGCTTGGGA---AAGACAGCTC-----TTATCACTCTCTT i mm10.chr5 I 6 I 2 s canFam3.chr26 33148617 41 - 38964690 -GATT-ATTGAAAAGAAAATCTCTTCTCCATTCTTAATTCCTC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 824923 38 - 1116856 GAGTT-TCCAAA---AAAGTCTGTACTCCATCCCTA-TCTCTC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9458869 516 - 31815103 I a score=562748.000000 s hg38.chr12_KI270834v1_alt 53774 39 + 119498 CTGGAC--AAAAGGA-GGGA-GTCTGTCTCTTAAAATCCAGTG s panTro5.chr12 127339833 39 + 137163284 CTGGAC--AAAAGGA-GGGA-GTCTGTCTCTTAAAATCCAGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125690654 39 + 135337776 CTGGAC--AAAAGGA-GGGA-GTCTGTCTCTTAAAATCCAGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8204023 39 - 8369578 CTGGAC--AAAAGGA-GGGA-GTCTGTCTCTTAAAATCCAGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97851978 39 + 106955855 CTGGAC--AAAAGGA-GGGA-GTCTGTCACTTAAAATCCAGTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123977259 39 + 133663169 CTGGAC--AAAAGGA-GGGA-GTCTGTCTCTTAAAATCCAGTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128224642 39 + 137757926 CTGGAC--AAAAGGA-GGGA-GTCTGTCTCTTAAAATCCAGTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10624079 39 - 16319837 CTGGAC--AAAAGGA-GGGA-GTCTGTCTCTTAAAATCCAGTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12247054 39 + 20526591 CTGGAC--AAAAGGA-GGGA-GTCTGTCTCTTAAAATCCAGTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119219415 39 + 128539186 CTGGAC--AAAAGGA-GGGA-GTCTGTCTCTTAAAATCCAGTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 549126 39 + 6255621 CTGGAC--AAAAGGA-GGGA-GTCTGTCTCTTAAAATCCAGTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4595991 39 - 8658521 CTGGAC--AAAAGGA-GGGA-GTCTGTCTCTTAAAATCCAGTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799506 41 + 124281992 CTGGACAAAAAAGGA-GGAA-GCCCGTCTCTTAAAATCCAGTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 443725 39 - 9212255 CTGGAC--AAAAGGA-AGAA-GCCTGGCTCTTAAAATCCAGTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2858713 39 + 4466143 CTGGAC--AAAAGGA-GGAC-GCCCATCTCTTAAAATCCAGTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1565334 40 + 5364348 CTGGAC--AAAAGGA-GGAAGGCCTGTCTCTTAAAATCCAGTG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4290891 40 + 7922563 CTGGAC--AAATGGAGGGGA-GTCCACCTCTTAAAATCCAGTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124804568 39 + 151834684 CCGGCG--AGAAGGA-GAGA-GTCTGCCTCTTAAAATGCTGCG i mm10.chr5 I 2 I 21 s canFam3.chr26 33148658 35 - 38964690 CTGGAC--AAAAGGA-AAGA-----GTCTCTTAGAATCCAGTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 824961 39 - 1116856 CTAGAC--AGAAGGA-GAGA-GTCTGCCTCCTAAGACACAGTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9458869 516 - 31815103 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I a score=74215.000000 s hg38.chr12_KI270834v1_alt 53813 6 + 119498 ATCCTT s panTro5.chr12 127339872 6 + 137163284 ATCCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125690693 6 + 135337776 ATCCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8204062 6 - 8369578 ATCCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97852017 6 + 106955855 ATCCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123977298 6 + 133663169 ATCTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128224681 6 + 137757926 ATCCTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10624118 6 - 16319837 ATCCTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12247093 6 + 20526591 ATCCTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119219454 6 + 128539186 ATCCTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 549165 6 + 6255621 ATCCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4596030 6 - 8658521 ATCCTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799547 6 + 124281992 ATCCTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 443764 6 - 9212255 ATCCTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2858752 6 + 4466143 ATCCTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1565374 4 + 5364348 A--CTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4290931 6 + 7922563 ATCTTT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33148693 6 - 38964690 ATCCTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 825000 6 - 1116856 TTCCTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124804607 21 + 151834684 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I a score=57078.000000 s hg38.chr12_KI270834v1_alt 53819 5 + 119498 TAAGA s panTro5.chr12 127339878 5 + 137163284 TAAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125690699 5 + 135337776 TAAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8204068 5 - 8369578 TAAGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97852023 5 + 106955855 TAAGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123977304 5 + 133663169 TAAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128224687 5 + 137757926 TAAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10624124 5 - 16319837 TAAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12247099 5 + 20526591 TAAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119219460 5 + 128539186 TAAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 549171 5 + 6255621 TAAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4596036 5 - 8658521 TAAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799553 5 + 124281992 TAAGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 443770 5 - 9212255 TAAGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2858758 5 + 4466143 TAAGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1565378 5 + 5364348 TAAGA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4290937 5 + 7922563 TAAAA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33148699 5 - 38964690 TTAAA i canFam3.chr26 C 0 C 0 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124804607 21 + 151834684 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I e dasNov3.JH568189 825006 0 - 1116856 C a score=-23282.000000 s hg38.chr12_KI270834v1_alt 53824 3 + 119498 C--------------------A--------t s panTro5.chr12 127339883 23 + 137163284 Ctttatttatttatttatttat--------t i panTro5.chr12 C 0 C 0 s panPan2.chr12 125690704 23 + 135337776 CAttatttatttatttatttat--------t i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8204073 19 - 8369578 C----tttatttatttatttat--------t i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97852028 3 + 106955855 C--------------------t--------t i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123977309 3 + 133663169 C--------------------A--------t i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128224692 3 + 137757926 C--------------------A--------t i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10624129 3 - 16319837 C--------------------A--------T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12247104 3 + 20526591 C--------------------A--------t i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119219465 3 + 128539186 C--------------------A--------T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 549176 3 + 6255621 C--------------------A--------T i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4596041 11 - 8658521 C--------------------Attatttatt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799558 3 + 124281992 C--------------------A--------T i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 443775 3 - 9212255 C--------------------A--------t i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2858763 3 + 4466143 C--------------------A--------t i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1565383 3 + 5364348 C--------------------A--------t i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4290942 3 + 7922563 C--------------------A--------A i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124804607 21 + 151834684 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I e dasNov3.JH568189 825006 0 - 1116856 C e canFam3.chr26 33148704 0 - 38964690 C a score=1128039.000000 s hg38.chr12_KI270834v1_alt 53827 115 + 119498 -tatttat-----ttatttatttattttgagacagggtctctctctgtca-cccaggccacagtgcagtggtacgatcacggctctctgcagcctcaacctc-------ctgggctcaagtgatcttcc s panTro5.chr12 127339906 115 + 137163284 -tatttat-----ttatttatttattttgagacggggtctctttctgtca-cccaggccacagtgcagtggtacgatcacggctctctgcagcctcaacctc-------ctgggctcaagtgatcttcc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125690727 115 + 135337776 -tatttat-----ttatttatttattttgagacagggtctctttctgtca-cccaggccacagtgcagtggtacgatcacggctctctgcagcctcaacctc-------ctgggctcaagtgatcttcc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8204092 115 - 8369578 -tatttat-----ttatttatttatttagagacagggtctctctctgtca-cccaggccacagtgcagtggtacgatcatggctctctgcagcctcaacctc-------ctgggctcaagtgatcttcc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97852031 115 + 106955855 -tatttat-----ttatttatttattttgagacagggtctctctctgtca-cccaggccacagtgcagtggtacgatcacggctctctgcagcctcaacctc-------ctgggctcaagtgatcttcc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123977312 115 + 133663169 -tatttat-----ttatttatttacttagagacagggtctctctctgtca-cccaggccacagtgcagtggtatgatcacggctctctgcagcctcaacctc-------ctgggctcaagtgatcttcc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128224695 115 + 137757926 -tatttat-----ttatttatttacttagagacagggtctctctctgtca-cccaggccacagtgcagtggtatgatcacggctctctgcagcctcaacctc-------ctgggctcaagtgatcttcc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10624132 122 - 16319837 -TAtttat-----ttatttatttacttagagacagggtctctctctgtca-cccaggccacagtgcagtggtatgatcacggctctctgcagcctcaacctcgcctcttctgggctcaagtgatcttcc i macNem1.NW_012010578v1 C 0 I 1077 s cerAty1.NW_012001186v1 12247107 115 + 20526591 -tatttat-----ttatttatttacttagagacagggtctctctctgtca-cccaggccacagtgcagtggtatgatcacggctctctgcagcctcaacctc-------ctgggctcaagtgatcttcc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119219468 115 + 128539186 -TAtttat-----ttatttatttacttagagacagggtctctctctgtca-cccaggccacagtgcagtggtatgatcacggctctctgcagcctcaacctc-------ctgggctcaagtgatcttcc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 549179 115 + 6255621 -TAtttat-----ttatttatttacttagagacagggtctctctctgtca-cccaggccacagtgcagtggtgtgatcacggctctctgcagcctcaacctc-------ctgggctcaagtgatcttcc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4596052 115 - 8658521 -tatttat-----ttatttatttaCTTAgagacagggtctctctctgtca-cccaggccacagtgcagtggtatgatcacggctctctgcagcctcaacctc-------ctgggctcaagtgatcttcc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799561 121 + 124281992 AATTTAAtttgttttattcatttattttgatacagggtctctctctgtca-cccaggccgcagtgcagtggtgcagtcttggctcactgcagcctcaacctc-------ctgggctcaagtgatcctcc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 443778 120 - 9212255 -ttttaatttgttttatttatttattttgagacagggtctctctctgtca-cccaggccgcagtgcagtggtgcagtcttggttcactgcagccttaacctc-------ctgggctcaagtgaccctcc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2858766 120 + 4466143 -ttttaatttgttttatttattcattttgagacagggtccctgtctgtca-cccaggccgcagtgtagtggtgcagtcttggctcactgcagcctcaacctc-------ctgggttcaagtgatcctcc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1565386 117 + 5364348 -ttttaatttg--ttatttattta--ttgagacagggtctctctctgtcaccccaggccacagtgcagtggtgcagtcttggctcactgcagcctcaacctc-------ctgggctcaagtgatcctcc i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124804607 21 + 151834684 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I e dasNov3.JH568189 825006 0 - 1116856 C e canFam3.chr26 33148704 0 - 38964690 C e otoGar3.GL873618 4290945 0 + 7922563 C a score=321717.000000 s hg38.chr12_KI270834v1_alt 53942 39 + 119498 tgcctcagcctctggagtagccgggactatgggcacaca s panTro5.chr12 127340021 39 + 137163284 tgcctcagcctccggagtagccgggactatgggcacaca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125690842 39 + 135337776 tgcctcagcctccggagtagccgggactatgggcacaca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8204207 39 - 8369578 tgcctcagcctccggagtagccgggactataggcacaca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97852146 39 + 106955855 tgcctcagcctcctgagtagccgggactacgggcacaca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123977427 39 + 133663169 tgcctcagcctcccaagtagccgggactatgggcacata i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128224810 39 + 137757926 tgcctcagcctcccaagtagccgggactatgggcacata i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12247222 39 + 20526591 tgcctcagcctcccaagtagccgggactatgggcacata i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119219583 39 + 128539186 tgcctcagcctcccaagtagctgggactatgggcacata i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 549294 39 + 6255621 tgcctcagcctcccaagtagccgggactatgggcacata i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4596167 39 - 8658521 tgcctcagcctcccaagtagccgggactatgggcacata i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799682 39 + 124281992 tgcctcagcctcccaaagtgctaggattacaggcatgag i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 443898 39 - 9212255 tgcttcagcctcccgagtagctgggactaggggcacaca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2858886 39 + 4466143 tgcttcagcctcccgagtggctgggactaggggcacaca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1565503 39 + 5364348 tgcttcagcctcccaagtagctgggactaggggcacgta i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124804607 21 + 151834684 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I e dasNov3.JH568189 825006 0 - 1116856 C e canFam3.chr26 33148704 0 - 38964690 C e otoGar3.GL873618 4290945 0 + 7922563 C e macNem1.NW_012010578v1 10624254 1077 - 16319837 I a score=1057022.000000 s hg38.chr12_KI270834v1_alt 53981 144 + 119498 tcaccgtgcccagctgatttttttgtttttatttttgtagagacgtagtcttgctctgtggcccaggttggtctcgaactcctgggctcaagtgatcctccctcctcagcctcccaaagtgctgggattataggcatgagccac s panTro5.chr12 127340060 144 + 137163284 tcaccgtgcccagctgatttttttgtttttatttttgtagagacgtagtcttgctctgtggcccaggttggtctcgaactcctgggctcaagtgatcctccctcctcagcctcccaaagtgctgggattataggcatgagccac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125690881 142 + 135337776 tcaccgtgcccagctgatttttt--gttttatttttgtagagacgtagtcttgctctgtggcccaggttggtctcgaactcctgggctcaagtgatcctccctcctcagcctcccaaagtgctgggattataggcatgagccac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8204246 144 - 8369578 tcaccatgcccaggtgatttttttgtttttatttttgtagagacgtagtcttgctctgtggcccaggttggtctcaaactcctgggctcaagtgatcctccctcctcagcctcccaaagtgctgggattataggcatgagccac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97852185 132 + 106955855 tcaccgtgcccagctaatttttttgtttttatttttgtagagacgtagtcttgctcggtggcccaggttggtctcgaagtcctggga------------ccctcctcagcctcccaaagtgctgggattataggcatgagccac i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123977466 144 + 133663169 tcaccgtgcccagctaatggttttgtttttatttttgtagagacagagtcttgctccatggcccaggttggtctcaaactcctgtgctcaagttatcctccctcctcagcctcccaaagtgctagtattacaggcatgagccac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128224849 144 + 137757926 tcaccgtgcccagctaatggttttgtttttatttttgtagagacagagtcttgctccatggcccaggttggtctcaaactcctgtgctcaagttatcctccctcctcagcctcccaaagtgctagtattacaggcatgagccac i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12247261 144 + 20526591 tcaccgtgcccagctaatggttttgtttttatttttgtagagacagagtcttgctccatggcccaggttggtctcaaactcctgtgctcaagttatcctccctcctcagcctcccaaagtgctaggattacaggcatgagccac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119219622 144 + 128539186 tcaccgtgcccagctaatgtttttgtttttatttttgtagagacagagtcttgctccgtggcccaggttggtctcgaactcctgtgctcaagttatcctccctcctcagcctcccaaagtgctaggattacaggcatgagccac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 549333 144 + 6255621 tcaccgtgcccagctaatggttttgtttttatttttgtagagacagagtcttgctccatggcccaggttggtctcgaactcctgtgctcaagttatcctccctcctcagcctcccaaagtgctaggattacaggcatgagccac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4596206 144 - 8658521 tcactgtgcccagctaatgtttttgtttttatttttgtagagacggagtcttgctccatggcccaggttggtctcgaacccctgggctcaagttatcctccctcctcagcctcccaaagtgctaggattacaggcatgagccac i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 443937 144 - 9212255 tcaccgggcccagctaatttttttatttttatttttgtagagacagagtcttgctatgtggcccagattggtctcaaactcctgggctcaagtgatcctcctgcctcagcctcccaaagtgctaggattataggcatgagccac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2858925 144 + 4466143 tcaccgggcccagctaatttttttatttttatttttgtagagacagaatcttgctttgtggcccagattggtctcaaactcctgggctcaagtgatcctcctgcctcagcctcccaaagtgctaggattataggcatgagccac i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1565542 143 + 5364348 tcaccaggcccagctaatttttttatttttatttttggagagacagagtcttgctatgtggcccagattggtctcaacctcctgggctccagtgatcctcctg-ctcagcctcccaaagtgctaggattacaggcatgagccac i aotNan1.NW_018491581v1 C 0 I 28 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124804607 21 + 151834684 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I e dasNov3.JH568189 825006 0 - 1116856 C e canFam3.chr26 33148704 0 - 38964690 C e otoGar3.GL873618 4290945 0 + 7922563 C e calJac3.chr9 114799721 0 + 124281992 C e macNem1.NW_012010578v1 10624254 1077 - 16319837 I a score=107247.000000 s hg38.chr12_KI270834v1_alt 54125 17 + 119498 tgtgcTGGGTTTTAAAT s panTro5.chr12 127340204 17 + 137163284 cgtgcTGGGTTTTAAAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125691023 17 + 135337776 cgtgcTGGGTTTTAAAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8204390 17 - 8369578 cgtgcTGGGTTTTAAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97852317 17 + 106955855 catgcTGAGTTTTAAAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123977610 17 + 133663169 cgtgcTGGGTTTTAAAt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128224993 17 + 137757926 tgtgcTGGGTTTTAAAt i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12247405 17 + 20526591 cgtgcTGGGTTTTAAAt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119219766 17 + 128539186 cgtgcTGGGTTTTAAAt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 549477 17 + 6255621 tgtgcTGGGTTTTAAAt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4596350 17 - 8658521 cgtgcTGGGTTTTAAAt i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 444081 17 - 9212255 catgcTGGGTTTAAAAC i saiBol1.JH378194 C 0 I 1 s cebCap1.NW_016107484v1 2859069 17 + 4466143 cacgcTGGGTTTAAAAC i cebCap1.NW_016107484v1 C 0 I 1 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124804607 21 + 151834684 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I e dasNov3.JH568189 825006 0 - 1116856 C e canFam3.chr26 33148704 0 - 38964690 C e otoGar3.GL873618 4290945 0 + 7922563 C e aotNan1.NW_018491581v1 1565685 28 + 5364348 I e calJac3.chr9 114799721 0 + 124281992 C e macNem1.NW_012010578v1 10624254 1077 - 16319837 I a score=40967.000000 s hg38.chr12_KI270834v1_alt 54142 10 + 119498 TC-tctttttt s panTro5.chr12 127340221 10 + 137163284 TC-tttttttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125691040 8 + 135337776 tc---tttttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8204407 11 - 8369578 TCTtttttttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97852334 10 + 106955855 TC-tttttttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123977627 10 + 133663169 tc-tatttttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128225010 10 + 137757926 tc-tatttttt i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12247422 10 + 20526591 tc-tatttttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119219783 10 + 128539186 tc-tatttttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 549494 10 + 6255621 tc-tatttttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4596367 10 - 8658521 tc-tatttttt i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 444099 10 - 9212255 tt-tttttttt i saiBol1.JH378194 I 1 C 0 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124804607 21 + 151834684 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I e dasNov3.JH568189 825006 0 - 1116856 C e canFam3.chr26 33148704 0 - 38964690 C e otoGar3.GL873618 4290945 0 + 7922563 C e aotNan1.NW_018491581v1 1565685 28 + 5364348 I e cebCap1.NW_016107484v1 2859086 1 + 4466143 I e calJac3.chr9 114799721 0 + 124281992 C e macNem1.NW_012010578v1 10624254 1077 - 16319837 I a score=-7450.000000 s hg38.chr12_KI270834v1_alt 54152 3 + 119498 -----tt-t s panTro5.chr12 127340231 3 + 137163284 -----tt-t i panTro5.chr12 C 0 C 0 s panPan2.chr12 125691048 3 + 135337776 -----tt-t i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8204418 3 - 8369578 -----tt-t i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97852344 3 + 106955855 -----tc-t i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123977637 7 + 133663169 aaaaatt-- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128225020 7 + 137757926 aaaaatt-- i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12247432 7 + 20526591 aaaaatt-- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119219793 7 + 128539186 aaaaatt-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 549504 7 + 6255621 aaaaatt-- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4596377 3 - 8658521 -----ttt- i colAng1.NW_012116043v1 C 0 I 1152 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124804607 21 + 151834684 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I e dasNov3.JH568189 825006 0 - 1116856 C e canFam3.chr26 33148704 0 - 38964690 C e otoGar3.GL873618 4290945 0 + 7922563 C e aotNan1.NW_018491581v1 1565685 28 + 5364348 I e cebCap1.NW_016107484v1 2859086 1 + 4466143 I e saiBol1.JH378194 444109 0 - 9212255 C e calJac3.chr9 114799721 0 + 124281992 C e macNem1.NW_012010578v1 10624254 1077 - 16319837 I a score=601520.000000 s hg38.chr12_KI270834v1_alt 54155 160 + 119498 ttaatgctttaaattctagggtacatgtgcacaacatgcaggtttgttacatacgtatacatgtgccatgttggtgtagtgcacccattaactcgtcattt-acattaggtgtatctcctaatgctatccctcccccctccccccaccccacaacaggccc s panTro5.chr12 127340234 160 + 137163284 ttaatgctttaaattctagggtacatgtgcacaacatgcaggtttgttacatacgtatacatgtgccatgttggtgtagtgcacccattaactcgtcattt-acattaggtgtatctcctaatgctatccctcccccgtccccccaccccacaacaggccc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125691051 159 + 135337776 ttaatgctttaaattctagggtacatgtgcacaacatgcaggtttgttacatacgtatacatgtgccatgttggtgtagtgcacccattaactcgtcattt-acattaggtgtatctcctaatgctatccctcccccgtcccccaccccaccaacagg-cc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8204421 161 - 8369578 ttaatgctttaaattctagggtacatgtgcacaacatgcaggtttgttacatacgtatacatgtgccatattggtgtagtgcacccattaactcatcatttaacattaggtgtatctcctaatgctatccctcccccctccccccaccccacaacaggccc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97852347 160 + 106955855 tttatactttaaattctagggtacatgtgcacaacatgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcatcattt-acattgggtatatctcctaatgctgtccctcccccctccccccaccccacaacaggccc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123977644 160 + 133663169 attatactttaagttctagggtacatgtgcacaacgtgcaggtttgttacatatgtatacgtgtgccatattggtgtgctgcacccattaactcgtcattt-acattaggtatatctcctaatgctatacctcccccctacccccaccccacaacaggccc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128225027 160 + 137757926 attatactttaagttctagggtacatgtgcacaacgtgcaggtttgttacatatgtatacgtgtgccatattggtgtgctgcacccattaactcgtcattt-acattaggtatatctcctaatgctatacctcccccctacccccaccccacaacaggccc i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12247439 160 + 20526591 attatactttaagttctagggtacatgtgcaaaacgtgcaggtttgttacatatgtatacgtgtgccatattggtgtgctgcacccattaactcgtcattt-acattaggtatatctcctaatgctatacctcccccctacccccaccccacaacaggccc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119219800 160 + 128539186 attatacttcaagttctagggtacatgtgcacaacgtgcaggtttgttacatatgtatacgtgtgccatattggtgtgctgcacccattaactcgtcattt-acattagttatatctcctaatgctatacctccccgctacccccaccccacaacaggccc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 549511 160 + 6255621 attatactttaagttctagggtacatgtgcacaacgtgcaggtttgttacatatgtatacgtgtgccatattggtgtgctgcacccattaactcgtcattt-acattaggtatatctcctaatgctatacctcccctctacccccaccccacaacaggccc i manLeu1.NW_012103587v1 C 0 T 5738 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124804607 21 + 151834684 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I e dasNov3.JH568189 825006 0 - 1116856 C e canFam3.chr26 33148704 0 - 38964690 C e otoGar3.GL873618 4290945 0 + 7922563 C e aotNan1.NW_018491581v1 1565685 28 + 5364348 I e cebCap1.NW_016107484v1 2859086 1 + 4466143 I e saiBol1.JH378194 444109 0 - 9212255 C e calJac3.chr9 114799721 0 + 124281992 C e colAng1.NW_012116043v1 4596380 1152 - 8658521 I e macNem1.NW_012010578v1 10624254 1077 - 16319837 I a score=1276570.000000 s hg38.chr12_KI270834v1_alt 54315 416 + 119498 tggtgtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttctgtccttgcagtagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcctttttaatggatgcatagtattccatggtgtatatgtgccaca-ttttcttaatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtgagtagtgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttgtaatcctttaggtatatgcccagtaacgggatggctgggtcaaacactatttctagttctagatccttgaggaatcgccacactgacttccacaa s panTro5.chr12 127340394 416 + 137163284 tggtgtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgtggtgtttggttttctgtccttgcaatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcctttttaatggatgcatagtattccatggtgtatatgtgccaca-ttttcttaatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtgagtagtgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttgtaatcctttaggtatatgcccagtaatgggatggctgggtcaaacactatttctagttctagatccttgaggaatcgccacactgtcttccacaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125691210 416 + 135337776 tcgtgtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctgtgagtgagaacatgtggtgtttggttttctgtccttgcaatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcctttttaatggatgcatagtattccatggtgtatatgtgccaca-ttttcttaatccagtctatcattggtgggcatttgggttggttccaagtctttgctattgtgagtagtgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttgtaatcctttaggtatatgcccagtaatgggatggctgggtcaaacactatttctagttctagatccttgaggaatcgccacactgtcttccacaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8204582 416 - 8369578 tggtgtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttctgtccttgcaatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcctttttaatggatgcgtagtattccatggtgtatatgtgccaca-ttttcttaatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtgagtagtgccacaataaacatacatgtgcatgtgtctttatagcagcatgatttgtaatcctttaggtatatgcccagtaatgggatggctgggtcaaacactatttctagttctagattcttgaggaatcgccacactgtcttccacaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97852507 416 + 106955855 tagtgtgtaatgttccccttcctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttctgtccttgccatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcctttttaatggctgcatagtattccatggtgtatatgtgccaca-ttttcttaatccggtctatcattgatggccatttgggttggttcctagtctttgctattgtgaatagtgccacagtaaacatacgtgtgcatgtgtctttatagtagcatgatttataatcctttaggtatatgcccagtaatgggatggctgggtcaaacggtatttctagttctagatccttgaggaatcgccacactgtcttccacaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123977804 407 + 133663169 ctgtgtgtgatgttccccttcctgtg---------tctcattgttcatttcccacctatgagtgagaacatgtggtatttggttttctgttcttgcgatagtttgctgagaatgatggtttccggcttcatccatgtccctataaaggacatgaactcatccttttttatggctgcatagtattcaatggtgtatatgtgccaca-ttttcttaatccagtctatcattgatggacatttgggttggttccaagtcttcgctattgtgaataatgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatgcccagtaatgggattgctgggtcaaatggtattaatagttctagatccttgaggaattgccacactgtcttccacaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128225187 407 + 137757926 ctgtgtgtgatgttccccttcctgtg---------tctcattgttcatttcccacctatgagtgagaacatgtggtatttggttttctgttcttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctataaaggacatgaactcatccttttttatggctgcatagtattcaatggtgtatatgtgccaca-ttttcttaatccagtctatcattgatggacatttgggttggttccaagtcttcgctattgtgaataatgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatgcccagtaatgggattgctgggtcaaatggtattaatagttctagatccttgaggaattgccacactgtcttccacaa i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12247599 408 + 20526591 cggtgtgtgatgttccccttcctgtg---------tctcattgttcagttcccacctatgagtgagaacatgcggtatttggttttctgttcttgcaatagtttgctgagaatgatggtttccagctgcatccacgtccctacaaaggacacaaactcatccttttttatggctgcatagtattcaatggtgtatatgtgccacatttttcttaatccagtctatcattgatggacatttgggttggttccaagtcttcgctattgtgaatagtgccgcaataaacatacgtgtgtatgtgtctttatagcagcatgatttataatcctttgggtatatgcccagtaatgggatggctgggtcaaatggtattaatagttctagatccttgaggaatcgccacactgtcttccacaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119219960 407 + 128539186 cggtgtgtgatgttccccttcctgtg---------tctcattgttcagttcccacctatgagtgagaacatgcggtgtttggttttctgttcttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatccttttttatggctgcatagtattcaatggtgtatatgtgccaca-ttttcttaatccagtttatcattgatggacatttgggttggttccaagtcttcgctattgtgaatagtgccacaataaacatacgtgtgcatgtgtctttatagcagtatgatttataatcctttgggtatatgcccagtaatgggattgctgggtcaaatggtattaatagttctagatccttgaggaattgccacactgtcttccacaa i chlSab2.chr11 C 0 C 0 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124804607 21 + 151834684 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I e dasNov3.JH568189 825006 0 - 1116856 C e canFam3.chr26 33148704 0 - 38964690 C e otoGar3.GL873618 4290945 0 + 7922563 C e aotNan1.NW_018491581v1 1565685 28 + 5364348 I e cebCap1.NW_016107484v1 2859086 1 + 4466143 I e saiBol1.JH378194 444109 0 - 9212255 C e calJac3.chr9 114799721 0 + 124281992 C e colAng1.NW_012116043v1 4596380 1152 - 8658521 I e manLeu1.NW_012103587v1 549671 5738 + 6255621 T e macNem1.NW_012010578v1 10624254 1077 - 16319837 I a score=378139.000000 s hg38.chr12_KI270834v1_alt 54731 97 + 119498 tggttgaactagtttacagtctcaccaactgtgtaaaactgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatt s panTro5.chr12 127340810 97 + 137163284 tggttgaactagtttacagtctcaccaactgggtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125691626 97 + 135337776 tggttgaactagtttacagtctcaccaactgggtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8204998 97 - 8369578 tggttgaactagtttacagtctcaccaactgtgtaaaagtgtttgtatttctccacatcctctccagcacctgttgtttcctgactttttaatgatt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97852923 97 + 106955855 tggttgaactagtttacagtcccaccaacagtgtaaaagtgttcgtatttcttcacatcctctccagcacctgttgtttcctgactttttagtgatc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978211 97 + 133663169 tggctgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128225594 97 + 137757926 tggctgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatg i macFas5.chr11 C 0 C 0 s cerAty1.NW_012001186v1 12248007 97 + 20526591 tggctgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119220367 97 + 128539186 tggctgaattagtttacagtcccaccaacagtgtaaaagcattcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 543933 97 + 6255621 tggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccaacacctgtcgtttcctgactttttaatgatg i manLeu1.NW_012103587v1 T 5738 C 0 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124804607 21 + 151834684 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I e dasNov3.JH568189 825006 0 - 1116856 C e canFam3.chr26 33148704 0 - 38964690 C e otoGar3.GL873618 4290945 0 + 7922563 C e aotNan1.NW_018491581v1 1565685 28 + 5364348 I e cebCap1.NW_016107484v1 2859086 1 + 4466143 I e saiBol1.JH378194 444109 0 - 9212255 C e calJac3.chr9 114799721 0 + 124281992 C e colAng1.NW_012116043v1 4596380 1152 - 8658521 I e macNem1.NW_012010578v1 10624254 1077 - 16319837 I a score=754117.000000 s hg38.chr12_KI270834v1_alt 54828 158 + 119498 gccattctaagtggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcgtatccttcgcccactttttgatgaa s panTro5.chr12 127340907 158 + 137163284 gccattctaagtggtgtgagatggtatctcattgtagttttggtttgcatttctctgatggccagtgatgatgagcattttttcgtgtgtctgttggctgcataaatgtcttcttttgagaagtatctgttcatatccttcgcccactttttggtgag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125691723 158 + 135337776 gccattctaagtggtgtgagatggtatctcattgtagttttgatttgcatttctctgatggccagtgatgatgagcattttttcgtgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcgcccactttttgatgag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205095 158 - 8369578 gccattctaactgttgtgagatggtatctcattgtagttttgatttgcatttctctgatggccagtgatgatgagcattttttcgtgtgtctgttggctgcataaatgtcttcttttgagaaatgtctgttcatatccttcgcccactttttgatgag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853020 158 + 106955855 gccattctaactggtgtgagatggtatctcactgtaattttgatttgcatttctctgatggccagtgatgatgagcattttttcgtgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttcatctccttcgcccactttttgatggg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978308 158 + 133663169 gccattctaactggtgtgagatggtatctcattgtggttttgattggcatttctctgatggtgagtgatgatgggcattttttcgtgtgtctgttggctgcataaatgtcctcttttgagaagtgtctgttcatatcctttgcccactttgtgatggg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128225691 158 + 137757926 gccattctaactggtgtgagatggtatctcattgtggttttgattggcatttctctgatggtgagtgatgatgggcattttttcgtgtgtctgttggctgcataaatgtcctcttttgagaagtgtctgttcatatcctttgcccactttgtgatggg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10625331 158 - 16319837 gccattctaactggtgtgagatggtatctcattgtggttttgattggcatttctctgatggtgagtgatgatgggcattttttcgtgtgtctgttggctgcataaatgtcctcttttgagaagtgtctgttcatatcctttgcccactttgtgatggg i macNem1.NW_012010578v1 I 1077 C 0 s cerAty1.NW_012001186v1 12248104 158 + 20526591 gccattctaactggtgtgagatggtatctcattgtggttttgattggcatttctctgatggtgagtgatgatggacattttttcatgtgtctgttggctgcataaatgtcctcttttgagaagtgtctgttcgtatcctttgcccactttgtgatggg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119220464 158 + 128539186 gccattctaactggtgtgagatggtatctcattgtggttttgattggcatttctctgatggtgagtgatgatgggcattttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttcatatcctttgcccactttgtgatggg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544030 158 + 6255621 gccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggtgagtgatgatgggcattttttcatgtgtctgttggctgcataaatgtcctcttttgagaagtgtctgttcatatcctttgcccactttgtgatggg i manLeu1.NW_012103587v1 C 0 C 0 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124804607 21 + 151834684 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I e dasNov3.JH568189 825006 0 - 1116856 C e canFam3.chr26 33148704 0 - 38964690 C e otoGar3.GL873618 4290945 0 + 7922563 C e aotNan1.NW_018491581v1 1565685 28 + 5364348 I e cebCap1.NW_016107484v1 2859086 1 + 4466143 I e saiBol1.JH378194 444109 0 - 9212255 C e calJac3.chr9 114799721 0 + 124281992 C e colAng1.NW_012116043v1 4596380 1152 - 8658521 I a score=470978.000000 s hg38.chr12_KI270834v1_alt 54986 86 + 119498 gttgtttga-ttttttctcgtaaatttgtttaagttctttgtagattctggatattagccctttgtcagatgggtagattgtaaaaC s panTro5.chr12 127341065 86 + 137163284 gttgtttga-ttttttctcgtaaattcgtttaagttctttgtagattctggatattagccctttgtcagatgggtagattgtaaaac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125691881 86 + 135337776 gttgtttga-ttttttctcgtaaatttgtttaagttctttgtagattctggatattagccctttgtcagatgggtagattgtaaaaC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205253 86 - 8369578 gttgtttga-ttttttctcctaaatttgtttaagttctttgtagattctggatattagccctttgtcagatgggtagattgtaaaac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853178 87 + 106955855 gttgtttgatttttttcttgtaaatttgtttaagctctttgtagattctggatattagccctttgtcagatgggtagattgtaaaac i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978466 86 + 133663169 gttgttcgt-tttattcttgtaaatttgtttgagttctttgtgggttctggatattagccctttatcagatggatagattgtaaaat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128225849 86 + 137757926 gttgttcgt-tttattcttgtaaatttgtttgagttctttgtgggttctggatattagccctttatcagatggatagattgtaaaat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10625489 86 - 16319837 gttgttcgt-tttattcttgtaaatttgtttgagttctttgtgggttctggatattagccctttatcagatggatagattgtaaaat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248262 86 + 20526591 gttgttcgt-tttattcttgtaaatttgtttgagttctttgtaggttctggatattagccctttatcagatggatagattgtaaaat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119220622 86 + 128539186 gttgtttgt-ttttttcttgtaaatttgtttgagttctttgtaggttctggatattagccctttatcagatggatagatggtaaaat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544188 86 + 6255621 gttgttcgt-tttattcttgtaaatttgtttgagttctttgtaggttctggatattagccctttatcagatggatagattgtaaaat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4597532 86 - 8658521 gttgtttgt-ttttttcttgtaaatttgtttgagttctttgtaggttctggatattagccctttatcagatggatagattgtaaaac i colAng1.NW_012116043v1 I 1152 C 0 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124804607 21 + 151834684 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I e dasNov3.JH568189 825006 0 - 1116856 C e canFam3.chr26 33148704 0 - 38964690 C e otoGar3.GL873618 4290945 0 + 7922563 C e aotNan1.NW_018491581v1 1565685 28 + 5364348 I e cebCap1.NW_016107484v1 2859086 1 + 4466143 I e saiBol1.JH378194 444109 0 - 9212255 C e calJac3.chr9 114799721 0 + 124281992 C a score=114603.000000 s hg38.chr12_KI270834v1_alt 55072 23 + 119498 CCACCATGCTGGGTTTTGAA----------TTC s panTro5.chr12 127341151 23 + 137163284 ccaccatgctgggttttgaa----------ttc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125691967 23 + 135337776 CCACCATGCTGGGTTTTGAA----------TTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205339 23 - 8369578 ccaccatgctgggttttaaa----------ttc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853265 23 + 106955855 ccaccgtgctgggtttttaa----------ttc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978552 23 + 133663169 ctaccatgctgggttttaac----------ttc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128225935 23 + 137757926 ctaccatgctgggttttaac----------ttc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10625575 23 - 16319837 ctaccatgctgggttttaac----------ttc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248348 23 + 20526591 ctaccatgctgggttttaac----------ttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119220708 27 + 128539186 ctaccatgttgggttttaac------ttttttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544274 33 + 6255621 ctaccatgctgggttttaacttctttttttttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4597618 23 - 8658521 ctcccgtgctgggttttaac----------ttc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799721 21 + 124281992 ccaccatgctgggtttaaaa----------c-- i calJac3.chr9 C 0 C 0 e micMur3.chr21 9458869 516 - 31815103 I e mm10.chr5 124804607 21 + 151834684 I e proCoq1.NW_012154285v1 6708896 50 - 9870158 I e dasNov3.JH568189 825006 0 - 1116856 C e canFam3.chr26 33148704 0 - 38964690 C e otoGar3.GL873618 4290945 0 + 7922563 C e aotNan1.NW_018491581v1 1565685 28 + 5364348 I e cebCap1.NW_016107484v1 2859086 1 + 4466143 I e saiBol1.JH378194 444109 0 - 9212255 C a score=24752.000000 s hg38.chr12_KI270834v1_alt 55095 2 + 119498 TT s panTro5.chr12 127341174 2 + 137163284 tt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125691990 2 + 135337776 TT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205362 2 - 8369578 tt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853288 2 + 106955855 tt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978575 2 + 133663169 tt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128225958 2 + 137757926 tt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10625598 2 - 16319837 tt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248371 2 + 20526591 tt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119220735 2 + 128539186 tt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544307 2 + 6255621 tt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4597641 2 - 8658521 tt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799742 2 + 124281992 tt i calJac3.chr9 C 0 I 1 s saiBol1.JH378194 444109 2 - 9212255 tt i saiBol1.JH378194 C 0 I 1 s micMur3.chr21 9459385 2 - 31815103 TT i micMur3.chr21 I 516 C 0 s proCoq1.NW_012154285v1 6708946 2 - 9870158 TT i proCoq1.NW_012154285v1 I 50 C 0 s dasNov3.JH568189 825006 2 - 1116856 TT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124804607 21 + 151834684 I e canFam3.chr26 33148704 0 - 38964690 C e otoGar3.GL873618 4290945 0 + 7922563 C e aotNan1.NW_018491581v1 1565685 28 + 5364348 I e cebCap1.NW_016107484v1 2859086 1 + 4466143 I a score=13923.000000 s hg38.chr12_KI270834v1_alt 55097 1 + 119498 T s panTro5.chr12 127341176 1 + 137163284 t i panTro5.chr12 C 0 C 0 s panPan2.chr12 125691992 1 + 135337776 T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205364 1 - 8369578 t i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853290 1 + 106955855 t i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978577 1 + 133663169 t i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128225960 1 + 137757926 t i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10625600 1 - 16319837 t i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248373 1 + 20526591 t i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119220737 1 + 128539186 t i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544309 1 + 6255621 t i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4597643 1 - 8658521 t i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799745 1 + 124281992 t i calJac3.chr9 I 1 C 0 s saiBol1.JH378194 444112 1 - 9212255 t i saiBol1.JH378194 I 1 C 0 s cebCap1.NW_016107484v1 2859087 1 + 4466143 T i cebCap1.NW_016107484v1 I 1 C 0 s micMur3.chr21 9459387 1 - 31815103 T i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6708948 1 - 9870158 T i proCoq1.NW_012154285v1 C 0 C 0 s dasNov3.JH568189 825008 1 - 1116856 T i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124804607 21 + 151834684 I e canFam3.chr26 33148704 0 - 38964690 C e otoGar3.GL873618 4290945 0 + 7922563 C e aotNan1.NW_018491581v1 1565685 28 + 5364348 I a score=44487.000000 s hg38.chr12_KI270834v1_alt 55098 3 + 119498 TTT s panTro5.chr12 127341177 3 + 137163284 ttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125691993 3 + 135337776 TTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205365 3 - 8369578 ttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853291 3 + 106955855 ttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978578 3 + 133663169 ttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128225961 3 + 137757926 ttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10625601 3 - 16319837 ttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248374 3 + 20526591 ttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119220738 3 + 128539186 ttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544310 3 + 6255621 ttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4597644 3 - 8658521 tct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799746 3 + 124281992 ttt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444113 3 - 9212255 ttt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859088 3 + 4466143 TTT i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9459388 3 - 31815103 TTT i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6708949 3 - 9870158 TTT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4290945 3 + 7922563 TTT i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 825009 3 - 1116856 TTT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124804607 21 + 151834684 I e canFam3.chr26 33148704 0 - 38964690 C e aotNan1.NW_018491581v1 1565685 28 + 5364348 I a score=30399.000000 s hg38.chr12_KI270834v1_alt 55101 8 + 119498 TTTTTTTA s panTro5.chr12 127341180 6 + 137163284 tttttt-- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125691996 5 + 135337776 TTTTT--- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205368 6 - 8369578 tttttt-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853294 8 + 106955855 tttttttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978581 8 + 133663169 ttgttttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128225964 8 + 137757926 ttgttttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10625604 8 - 16319837 ttgttttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248377 5 + 20526591 ---ttttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119220741 8 + 128539186 ttttttta i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544313 8 + 6255621 tttttttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4597647 7 - 8658521 tt-ttttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799749 7 + 124281992 ttgtTTT- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444116 7 - 9212255 ttttttA- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859091 7 + 4466143 TTTTTTT- i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9459391 8 - 31815103 TTTTTTTG i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6708952 8 - 9870158 TTTTTTTA i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4290948 8 + 7922563 TTCTTCTA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33148704 8 - 38964690 TTTTTTTA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 825012 8 - 1116856 CTCTTTTA i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124804607 21 + 151834684 I e aotNan1.NW_018491581v1 1565685 28 + 5364348 I a score=49100.000000 s hg38.chr12_KI270834v1_alt 55109 4 + 119498 -AATG s panTro5.chr12 127341186 4 + 137163284 -aatg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692001 4 + 135337776 -AATG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205374 4 - 8369578 -aatg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853302 4 + 106955855 -aatg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978589 4 + 133663169 -aATG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128225972 4 + 137757926 -aatg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10625612 4 - 16319837 -aATG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248382 4 + 20526591 -aatg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119220749 4 + 128539186 -aatg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544321 4 + 6255621 -aatg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4597654 4 - 8658521 -aatg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799756 4 + 124281992 -AATG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444123 4 - 9212255 -AATG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859098 4 + 4466143 -AATG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1565713 4 + 5364348 -AATG i aotNan1.NW_018491581v1 I 28 C 0 s micMur3.chr21 9459399 4 - 31815103 -AATT i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6708960 4 - 9870158 -AATT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4290956 4 + 7922563 -AATT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33148712 4 - 38964690 -AATT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 825020 4 - 1116856 CATT- i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124804607 21 + 151834684 I a score=3020253.000000 s hg38.chr12_KI270834v1_alt 55113 155 + 119498 CAGGAAATTCTTGAAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTCGACGATGCTCTGGAGCATTTAACCCGGGTGCACCGTATCATCCGCATGGACCGCGGCCACGCCCTGCTGGTCGGGGTAGGGGGCTCAGGGAAGCAGTC s panTro5.chr12 127341190 155 + 137163284 caggaaattcttgaAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTCGACGATGCTCTGGAGCATTTAACCCGGGTGCACCGTATCATCCGCATGGACCGCGGCCACGCCCTGCTGGTCGGGGTAGGGGGCTCAGGGAAGCAGTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692005 155 + 135337776 CAGGAAATTCTTGAAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTCGACGATGCTCTGGAGCATTTAACCCGGGTGCACCGTATCATCCGCATGGACCGCGGCCACGCCCTGCTGGTCGGGGTAGGGGGCTCAGGGAAGCAGTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205378 155 - 8369578 caggaaattcttgaAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTCGACGATGCTCTGGAGCATTTAACCCGGGTGCACCGTATCATCCGCATGGACCGCGGCCACGCCCTGCTGGTCGGGGTAGGGGGCTCAGGGAAGCAGTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853306 155 + 106955855 caggaaattcttgaAGAGTATAATGAAAGCAACACTAAAATGAACTTGGTTCTCTTTGATGACGCACTGGAGCATTTAACCCGGGTGCACCGTATCATCCGCATGGACCGTGGCCATGCCCTGCTGGTCGGGGTAGGGGGCTCAGGGAAGCAGTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978593 155 + 133663169 CAGGAAATTCTTGAAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTCGACGACGCTCTGGAGCATTTAACCCGGGTGCACCGTATCATCCGCATGGACCGCGGCCACGCCCTGCTGGTCGGGGTCGGGGGCTCAGGAAAGCAGTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128225976 155 + 137757926 caggaaattcttgaagagtataaTGAAAGCAACACCAAAATGAACTTGGTTCTCTTCGACGACGCTCTGGAGCATTTAACCCGGGTGCACCGTATCATCCGCATGGACCGCGGCCACGCCCTGCTGGTCGGGGTCGGGGGCTCAGGAAAGCAGTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10625616 155 - 16319837 CAGGAAATTCTTGAAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTCGACGATGCTCTGGAGCATTTAACCCGGGTGCACCGTATCATCCGCATGGACCGCGGCCACGCCCTGCTGGTCGGGGTCGGGGGCTCAGGGAAGCAGTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248386 155 + 20526591 caggaaattcttgaagagtataatgaaaGCAACACCAAAATGAACTTGGTTCTCTTCGACGACGCTCTGGAGCATTTAACCCGGGTGCACCGTATCATCCGCATGGACCGCGGCCACGCCCTGCTGGTCGGGGTCGGGGGCTCGGGGAAGCAGTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119220753 155 + 128539186 caggaaattcttGAAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTCGACGACGCTCTGGAGCATTTAACCCGCGTGCACCGTATCATCCGCATGGACCGCGGACACGCCCTGCTGGTCGGGGTAGGGGGCTCAGGGAAGCAGTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544325 155 + 6255621 caggaaattcttGAAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTCGACGACGCTCTGGAGCATTTAACCCGGGTGCACCGTATCATCCGCATGGACCGCGGCCACGCCCTGCTGGTCGGGGTCGGGGGCTCAGGGAAGCAGTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4597658 155 - 8658521 CAGGAAATTCTTGAAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTTGACGACGCTCTGGAGCATTTAACCCGGGTGCATCGTATCATCCGCATGGACCGCGGCCACGCCCTGCTGGTCGGGGTAGGGGGCTCAGGGAAGCAGTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799760 155 + 124281992 CAGGAAATTCTTGAAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTCGACGACGCTCTGGAGCATTTAACCCGGGTGCACCGCGTCATCCGCATGGACCGTGGCCACGCCCTGCTGGTCGGGGTAGGGGGCTCGGGGAAGCAGTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444127 155 - 9212255 CAGGAAATTCTTGAAGAGTATAATGAAAGCTACACCAAAATGAACTTGGTTCTCTTCGACGACGCTCTGGAGCATTTAACCCGGGTGCACCGAGTCATCCGCATGGACCGTGGCCACGCCCTGCTGGTCGGGGTAGGGGGCTCAGGGAAGCAGTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859102 155 + 4466143 CAGGAAATTCTTGAAGAGTATAATGAAAGCAACACCAAAATGAAGTTGGTTCTCTTTGATGACGCCCTGGAGCATTTAACCCGGGTGCACCGTGTCATCCGCATGGACCGTGGCCACGCCCTGCTGGTCGGGGTAGGGGGCTCGGGGAAGCAGTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1565717 155 + 5364348 CAGGAAATTCTTGAAGAGTATAACGAAAGCAAACACAAAATGAACTTGGTTCTCTTCGACGACGCTCTGGAGCATTTAACCCGGGTGTACCGCATCATCCGCATGGACCGTGGCCACGCCCTGCTGGTCGGGGTAGGGGGCTCGGGGAAGCAGTC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9459403 155 - 31815103 CAGGAAATCCTTGAGGAGTATAACGAAAGCAACACCAAGATGAACTTGGTTCTCTTTGACGACGCTTTGGAGCATCTGACCCGCGTGCACCGCATCGTCCGCATGGACCGCGGCCACGCCCTGCTGGTGGGTGTCGGGGGCTCGGGCAAGCAGTC i micMur3.chr21 C 0 I 1191 s proCoq1.NW_012154285v1 6708964 155 - 9870158 CAGGAAATTCTTGAAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTTGACGACGCCCTGGAGCACTTAACCCGCGTGCACCGCATCATCCGGATGGACCGCGGCCACGCCCTGCTGGTGGGGGTCGGCGGCTCGGGGAAGCAGTC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4290960 155 + 7922563 CAGGAAATTCTTGAAGAATATAATGAAAGTAACACCAAAATGAACTTGGTTCTTTTTGATGACGCCCTGGAGCACTTAACCCGGGTGCACCGCATCATCCGAATGGACCGTGGCCACGCACTGCTGGTGGGTGTCGGGGGCTCGGGGAAGCAGTC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124804628 155 + 151834684 CAGGAAATCCTCGAGGAGTACAACGAAGTCAACACCAAGATGAACCTGGTGCTGTTTGACGACGCGCTGGAACACCTGACCCGCGTGCACCGCATCATTCGGATGGACCGAGGCCACGCATTGCTGGTGGGTGTGGGTGGCTCCGGGAAGCAGTC i mm10.chr5 I 21 C 0 s canFam3.chr26 33148716 155 - 38964690 CAGGAAATTCTTGAGGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTTGATGATGCTCTGGAGCACCTAACCCGTGTGCACCGCATCATCCGAATGGACCGTGGCCACGCCCTGCTGGTCGGGGTTGGAGGTTCAGGGAAGCAGTC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 825024 155 - 1116856 CAGGAAATTCTTGAAGAATATAATGAAAGCAACGCCAAAATGAACTTGGTCCTCTTTGATGATGCTTTGGAGCACTTAACCCGTGTGCACCGAATTATTCGAATGGACCATGGCCATGCTCTCCTGGTCGGGCTCGGGGGCTCCGGGAAGCAGGC i dasNov3.JH568189 C 0 C 0 a score=693424.000000 s hg38.chr12_KI270834v1_alt 55268 42 + 119498 TCTTTCGAGGCTGGCTGCCTTCACAGCCAGCTGTGAGGTCAG s panTro5.chr12 127341345 42 + 137163284 TCTTTCGAGGCTGGCTGCCTTCACAGCCAGCTGTGAGGTCAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692160 42 + 135337776 TCTTTCGAGGCTGGCTGCCTTCACAGCCAGCTGTGAGGTCAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205533 42 - 8369578 TCTTTCGAGGCTAGCTGCCTTCACAGCCGGCTGTGAGGTCAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853461 42 + 106955855 TCTTTCGAGGCTGGCTGCCTTCACAGCCGGCTGTGAGGTCAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978748 42 + 133663169 TCTTTCGAGGCTGGCTGCTTTCACAGCCGGCTGTGAGGTCAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128226131 42 + 137757926 TCTTTCGAGGCTGGCTGCTTTCACAGCCGGCTGTGAGGTCAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10625771 42 - 16319837 TCTTTCGAGGCTGGCTGCTTTCACAGCCGGCTGTGAGGTCAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248541 42 + 20526591 TCTTTCGAGGCTGGCTGCTTTCACAGCCGGCTGTGAGGTTAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119220908 42 + 128539186 TCTTTCGAGGCTGGCTGCCTTCACAGCCGGCTGTGAGGTCAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544480 42 + 6255621 TCTTTCGAGGCTGGCTGCTTTCACAGCCGGCTGTGAGGTCAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4597813 42 - 8658521 TCTTTCGAGGCTGGCTGCCTTCACAGCCGGCTGTGAGGTCAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799915 42 + 124281992 TCTTTCGAGGCTGGCTGCCTTCACAGCTGGCTGCGAGGTCAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444282 42 - 9212255 ACTTTCGAGGCTGGCTGCCTTTACAGCTGGCTGCGAGGTCAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859257 42 + 4466143 TCTTTCGAGGCTGGCTGCCTTCACAGCTGGCTGCGAGGTCAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1565872 42 + 5364348 TCTTTCGAGGCTGGCTGCCTTCACAGCTGGCTGCGAGGTCAG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6709119 42 - 9870158 GCTGGCGCGGCTGGCCGCCTTCACAGCCGGCTGTGAGGTGAG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4291115 42 + 7922563 CCTTGCAAGGCTAGCTGCCTTCACAGCTAGCTGCGAGGTAAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124804783 42 + 151834684 GTTGGCTAGGCTGGCGGCCTTCACCGCAGGCTGTGAGGTGAG i mm10.chr5 C 0 I 909 s canFam3.chr26 33148871 42 - 38964690 TCTTGCCAGGTTGGCCGCCTTCACAGCTGGCTACGAGGTAAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 825179 42 - 1116856 TCTTGCAAGGCTGGCAGCTTTCACAGCTGGCTACGAGGTGAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9459558 1191 - 31815103 I a score=1444254.000000 s hg38.chr12_KI270834v1_alt 55310 110 + 119498 TCCACGTACCCTCCCAGAAATAGGTTTACGATGCCAGTTTCTGCAGTTGGTAGTTCGTGTACATATTGGAACAATCCACAGCAGATCATAGCATGATGTTTTCATAGAGT s panTro5.chr12 127341387 110 + 137163284 TCCACGTACCCTCCCAGAAATAGGTTTACGATGCCAGTTTCTGCAGTTGGTAGTTCATGTACATATTGGAACAATCCACAGCAGATCATAGCATGATGTTTTCATAGAGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692202 110 + 135337776 TCCACGTACCCTCCCAGAAATAGGTTTACGATGCCAGTTTCTGCAGTTGGTAGTTCATGTACATATTGGAACAATCCACAGCAGATCATAGCATGATGTTTTCATAGAGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205575 110 - 8369578 TCCACGTACCCTCCCAGAAATAGGTTTATGATGCCAGTTTCTGCAGTTGGTAGTTCATGTACATATTGGAACAATCCACAGCAGACCATAGCATGATGTTTTCATAGAGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853503 110 + 106955855 TCCACGTACCCTCCCAGAAATAGGTTTGCGATGCCAGTTTCTGCAGTTGGTAGTTCATGTACATATTGGAACAATCCACAGCAGATCATAGCATGATGTTTTCATAGAGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978790 110 + 133663169 TCCACGTACCCTCCCAGAAACAGGTTTATGATGCCAGTTTCTGCGTTTGGTAGTTCATGTACATATTGGAACAATCCACAGCAGATCATAACATGATGTTTTCATAGAGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128226173 110 + 137757926 TCCACGCACCCTCCCAGAAACAGGTTTATGATGCCAGTTTCTGCGTTTGGTAGTTCATGTACATATTGGAACAATCCACAGCAGATCATAACATGATGTTTTCATAGAGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10625813 110 - 16319837 TCCACGTACCCTCCCAGAAACAGGTTTATGATGCCAGTTTCTGCGTTTGGTAGTTCATGTACATATTGGAACAATCCACAGCAGATCATAACATGATGTTTTCATAGAGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248583 110 + 20526591 TCCACGTACCCTCCCAGAAACAGGTTTATGATGCCAGTTTCTGCGTTTAGTCGTTCATGTACATATTGGAACAATCCACAGCAGATCATAACATGATGTTTTCGTAGAGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119220950 110 + 128539186 TCCATGTACCCTCCCAGAAATAGGTTTATGATGCCAGTTTCTGCGTTTGGTAGTTCATGTACATATTGGAACAATCCACAGCAGATCATAACATGATGTTTTCATAGAGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544522 110 + 6255621 TCCACGTACCCTCCCAGAAACAGGTTTATGATGCCAATTTCTGCGTTTGGTAGTTCATGTACATATTGGAACAATCCACAGCAGATCATAACATGATGTTTTCATAGAGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4597855 110 - 8658521 TCCACATACCCTCCCAGAAACAGGTTTATGATGCCAGTTTCTGCGTTTGGTAGTTCATGTACATATTGGAACAATCCACAGCAGATCATAACATGATGTTTTCATAGAGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114799957 110 + 124281992 TCCATGTCCCCTCCCAGAAATAGGTTGATGATGCCACTCTCTGCAGTTAGCGGTTCATGTACATACTGGAACAATCCACAACAGATCGTAACAGGATGTTTTCATAGAGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444324 110 - 9212255 TCCACGTCCCCTCCCAGAAGTAGGTTGATGATGCCAGTTTCTGCAGTTAGTAGTTCATGTACATACTGGAACAATCCACAGCAGATCGTAACAGGATGTTTTCATAGGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859299 110 + 4466143 TCCATGTCCCCTCCCAGAAATCGGTTGATGATGCCAGTCTCTGCAGTTAGTAGTTCATGTACATACTGGAGCAATCCACAGCAGATCCTAACAGGATGTTTTCATAGAGT i cebCap1.NW_016107484v1 C 0 I 9 s aotNan1.NW_018491581v1 1565914 110 + 5364348 TCCACGTCCCCTCCCAGAAATACGTTGATGATGCCAGTCTCTGCAGTTAGTAGTTCATGTATGTACTGGAACAATCCACAGCAGAGCGTAACAGGATGTTTTCATAGAGT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6709161 109 - 9870158 CCCGCCTCCCCTCCCAGAAATA-GCGTGTCATGCCGGTTTCTGCCGTGGGTAGTTCATGTAACTATCGGGACCGTCTACAGCAGATCGTACCATGATGTTTTCATAGAGT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4291157 108 + 7922563 TCTCCCTTCTTTCCCAGAAAAA-ATGTATTTTGCCCGTTTCTGCCATTGGTA-TTTGCGTAACTATGGGAACAGTTCATAGCAGGTCATACTGTGATGTTTTTAGGGAGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33148913 98 - 38964690 TCAACCTCCTTTCTTAGAAATAGGTTTGTTATATCAATTTCAGCCATTGGTAGTTCATG------------CCATGTATAACAGATCATGACATGATGTTTTCATAGAGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 825221 109 - 1116856 CGTGTCTTCCCTCCCAGAAATACGTT-ATTAGGCCAGTTTCTGTAGTTGGTGAGTTATGGAAATATTAGACCAATCTATAGTGGATCATAACACGATGTTTACATAGAAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I a score=196025.000000 s hg38.chr12_KI270834v1_alt 55420 33 + 119498 ATCGAGGTGGGTG-T--TTTGGTTTGTTTTATTTTT s panTro5.chr12 127341497 33 + 137163284 ATCGAGGTGGGTG-T--TTTGGTTTGTTTTATTTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692312 33 + 135337776 ATCGAGGTGGGTG-T--TTTGGTTTGTTTTATTTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205685 33 - 8369578 ATCGAGGTGGGtg-t--tttggtttgttttattgtt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853613 33 + 106955855 ATCGAGGTGGGTG-T--CTTGGTTTGTTTTATTGTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978900 33 + 133663169 GTAGAGATGGGTG-T--TTTGGTTTGTTTTATTGTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128226283 33 + 137757926 GTAGAGATGGGTG-T--TTTGGTTTGTTTTATTGTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10625923 33 - 16319837 GTAGAGATGGGtg-t--tttggtttgttttattgtt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248693 34 + 20526591 GTAGAGGTGGGTgtt--tttggtttgttttattgtt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119221060 33 + 128539186 GTAGAGGCGGGTG-T--TTTGGTttgttttattgtt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544632 33 + 6255621 GTAGAGATGGGTG-T--TTTGGTttgttttattgtt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4597965 34 - 8658521 GTAGAGGTGGGTATt--tttggtttgttttattatc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114800067 19 + 124281992 GTAGAGGTGGGTG-T--TTTTG-------------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444434 19 - 9212255 GTAGAGGTGGGTG-T--TTTTG-------------- i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1566024 19 + 5364348 GTAGAGGTGGGTG-T--TTTTG-------------- i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6709270 35 - 9870158 GTAGAGGtgggtt-ttggtttttttgtttgtttgtt i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4291265 24 + 7922563 ATAGAGGTAGGTT-T-----------TTTTTTACTT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33149011 18 - 38964690 GTAGAATTGTTTT-T--TTTT--------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 825330 17 - 1116856 ATACAGTTGGATT-T--TTT---------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e cebCap1.NW_016107484v1 2859409 9 + 4466143 I a score=216088.000000 s hg38.chr12_KI270834v1_alt 55453 18 + 119498 TCTTGTTTTTGGCTTGAT s panTro5.chr12 127341530 18 + 137163284 TCTTGTTTTTGGCTTGAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692345 18 + 135337776 TCTTGTTTTTGGCTTGAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205718 18 - 8369578 tcttgtttttgGCTTGAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853646 18 + 106955855 TCTTGTTTTTGGCTTGAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978933 18 + 133663169 TCTTGTTTTTGGCGTGAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128226316 18 + 137757926 TCTTGTTTTTGGTGTGAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10625956 18 - 16319837 tgttgttttTGGCGTGAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248727 18 + 20526591 tcttgtttttggcttgat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119221093 18 + 128539186 tcttgtttttggcttgat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544665 18 + 6255621 tcttgtttttggcttgat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4597999 18 - 8658521 tcttgttttTGGCTTGAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114800086 18 + 124281992 CCTTGCTTTAGGCTTGAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444453 18 - 9212255 CCTTGTTTTAGGCTTGAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859418 18 + 4466143 CCTTGTTTTAGGCTTGAT i cebCap1.NW_016107484v1 I 9 C 0 s aotNan1.NW_018491581v1 1566043 17 + 5364348 CCTTG-TTTAGGCTTGGT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6709305 18 - 9870158 tcttgtttttggcttgAT i proCoq1.NW_012154285v1 C 0 I 2906 s otoGar3.GL873618 4291289 18 + 7922563 TCTTATTTTTGGCTTGGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33149029 7 - 38964690 CCTTGTT----------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 825347 16 - 1116856 --TCTTTTTTGGCTTAAC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I a score=312462.000000 s hg38.chr12_KI270834v1_alt 55471 36 + 119498 ATTACTA-TATTTTAACTGAATAGCCAGAGCATCTAA s panTro5.chr12 127341548 36 + 137163284 ATTACTA-TATTTTAACTGAATAGCCAGAGCATCTAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692363 36 + 135337776 ATTACTA-TATTTTAACTGAATAGCCAGAGCATCTAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205736 36 - 8369578 ATTACTA-TATTTTAACTGAATAGCCAGAGCATCTAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853664 36 + 106955855 ATTACTA-TATTTTAACTGAATAGCCAAAGCATCTAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978951 36 + 133663169 GTTACTA-TGTTTTAACTGAATAGCCAAAGCATCTAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128226334 36 + 137757926 ATTACTA-TGTTTTAACTGAATAGCCAAAGCATCTAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10625974 36 - 16319837 ATTACTA-TGTTTTAACTGAATAGCCAAAGCATCTAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248745 36 + 20526591 attgcta-tgttttaACTGAATAGCCAAAGCATCTAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119221111 36 + 128539186 attacta-tgttttaACTGAATAGCCAAAGCATCTAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544683 36 + 6255621 attacta-tgttttaACTGAATAGCCAAAGCATCTAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4598017 36 - 8658521 ATTACTA-TGTTTTAACTGAATAGCCAAAGCATCTAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114800104 26 + 124281992 ---CTTA-TATTTTAACTGAATAGTCAAAG------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444471 26 - 9212255 ---ACTA-TATTTTAACTGAATAGTCAAAG------- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859436 26 + 4466143 ---ATTA-TATTTTAACTGAACAGTCAAAG------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1566060 24 + 5364348 ----TTA-TATTTTAACTGAATAGTC-AAG------- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4291307 31 + 7922563 -----AT-TGTTTTTACTGACTATCCAAAGCATCTAA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33149036 27 - 38964690 ----------ACTTAACTGAATGGCTGAAGAATCTAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 825363 33 - 1116856 ---ATTAGCACTTTAACTGAACACTC-AAGCATCTAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I a score=83140.000000 s hg38.chr12_KI270834v1_alt 55507 14 + 119498 GTACAGGTGTTCTT s panTro5.chr12 127341584 14 + 137163284 GTACAGATGTTCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692399 14 + 135337776 GTACAGATGTTCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205772 13 - 8369578 GTAcaga-gttctt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853700 14 + 106955855 GTAcagatgttctt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123978987 14 + 133663169 GTAcagatgttctt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128226370 14 + 137757926 GTAcagatgttctt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10626010 14 - 16319837 GTAcagatgttctt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248781 14 + 20526591 GTAcagatgttctt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119221147 14 + 128539186 GTAcagatgttctt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544719 14 + 6255621 GTAcagatgttctt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4598053 14 - 8658521 GTAcagatgttctt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114800130 3 + 124281992 -----------ctt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444497 3 - 9212255 -----------ctt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859462 3 + 4466143 -----------ctt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1566084 3 + 5364348 -----------ctt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4291338 14 + 7922563 CTAcagatgcttgt i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33149063 3 - 38964690 -----------CTT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825396 0 - 1116856 C a score=533970.000000 s hg38.chr12_KI270834v1_alt 55521 53 + 119498 TGGCTTAGGATAGGGTTACATCCTGATAAAATAATCATAAGTCAA-AAATATTG s panTro5.chr12 127341598 53 + 137163284 TGGCTTAGGATAGGGTTACATCCTGATAAAATAATCATAAGTCAA-AAATATTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692413 53 + 135337776 TGGCTTAGGATAGGGTTACATCCTGATAAAATAATCATAAGTCAA-AAATATTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205785 53 - 8369578 tggcttaggatagggttacatcctgataaaataatcatacgtcaa-aaatatcg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853714 53 + 106955855 tggcttaggatagggttacatcttgataaactaatcataagtcaa-aaatttcg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123979001 53 + 133663169 tggcttaggatggagttacatcctgataaactattcataagtcaa-aaattttg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128226384 53 + 137757926 tggcttaggatggagttacatcctgataaactattcataagtcaa-aaatattg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10626024 53 - 16319837 tggcttaggatggagttacatcctgataaactattcataagtcaa-aaatattg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248795 53 + 20526591 tggcttaggatggagttacattctgataaactattcataagtcaa-aaatattg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119221161 53 + 128539186 tggcttaggatggagttacatcctgataaactattcataagtcaa-aaatattg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544733 53 + 6255621 tggcttaggatggagttacatcctgataaactattcataagtcaa-aaatattg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4598067 53 - 8658521 tggcttaggatggagctacatcctgataaactattcataagtcaa-aaatatcg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114800133 53 + 124281992 tgacttaggatggggttatatcccgataaactcatcataagtcag-aaatatcg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444500 53 - 9212255 tgacttagaatggggttacatcccgataaactcatcataagtcag-aaatatcg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859465 53 + 4466143 tgacttaggatggggttacatcccgataaactcatcataagtcag-aaatatcg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1566087 54 + 5364348 tgacttaggatagggttacatcctgataaactcatcataagtcagaaaacatcg i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4291352 52 + 7922563 tgacatatgat-gcactacatcctgataaacccatcataaataaa-aaatatAG i otoGar3.GL873618 C 0 I 647 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825396 0 - 1116856 C e canFam3.chr26 33149066 0 - 38964690 C a score=29168.000000 s hg38.chr12_KI270834v1_alt 55574 5 + 119498 TCAGT s panTro5.chr12 127341651 5 + 137163284 TCAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692466 5 + 135337776 TCAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205838 5 - 8369578 tcagt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853767 5 + 106955855 tgagt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123979054 5 + 133663169 tgagt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128226437 5 + 137757926 tgagt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10626077 5 - 16319837 tgagt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248848 5 + 20526591 tgagt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119221214 5 + 128539186 tgagt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544786 5 + 6255621 tgagt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4598120 5 - 8658521 tgagt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114800186 5 + 124281992 tgact i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444553 5 - 9212255 tgact i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859518 5 + 4466143 tgact i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1566141 5 + 5364348 tgact i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825396 0 - 1116856 C e canFam3.chr26 33149066 0 - 38964690 C e otoGar3.GL873618 4291404 647 + 7922563 I a score=880424.000000 s hg38.chr12_KI270834v1_alt 55579 81 + 119498 TGAAAATACATTTAatatcccaattaacccatcataaagttgaaaaatcctaagtggaaccatcaaagccggggaccatct s panTro5.chr12 127341656 81 + 137163284 TGAAAATACATTTAatatcccaattaacccatcataaagttgaaaaatcctaagtggaaccatcaaagctggggaccatct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692471 81 + 135337776 TGAAAATACATTTAatatcccaattaacccatcataaagttgaaaaatcctaagtggaaccatcaatgctggggaccatct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205843 81 - 8369578 tgaaaatacatttaatatcccaattaacccatcataaagttgaaaaatcctaagtggaaccatcaaagccggggaccatct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853772 81 + 106955855 tgaaaatgcatttaatattccaattaacccatcgtaaagttgaaaaatcctaagtggaaccatcaaagctgggcaccatct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123979059 81 + 133663169 tgaaaatgcatttaatatcccaataaacccatcgtaaagttgaaaaatcctaagtggaaccatcgaagccggggaccatct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128226442 81 + 137757926 tgaaaatgcatttaatatcccaataaacccatcgtaaagttgaaaaatcctaagtggaaccatcgaagccggggaccatct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10626082 81 - 16319837 tgaaaatgcatttaatatcccaataaacccatcgtaaagttgaaaaatcctaagtggaaccatcgaagccggggaccatct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248853 81 + 20526591 tgaaaatgcatttaatatcccaataaacccatcgtaaagttgaaaaatcctaagtggaaccatcgaagccggggaccatct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119221219 81 + 128539186 tgaaaatgcatttaatatcccaataaacccatcgtaaagttgaaaaatcctaagtggaaccatcgaagccggggaccatct i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544791 81 + 6255621 tgaaaatgcatttaatatcccaataaacccatcgtaaagttgaaaaatcctaagtggaaccatcgaagccggggaccatct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4598125 81 - 8658521 ttaaaatgcatttaatatcccaataaacccatcgtaaagttgaaaaatcctaagtggaaccatcgaagccagggaccatct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114800191 81 + 124281992 tgaaaatgcgtttaatatcccgataaacccattgtaaagttgaaaaatcctaagtggaaccattgaatttggggaccatct i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444558 81 - 9212255 tgaaaatgcatttaatatcctgataaatccattgtaaagctgaaacatcctaagttgaaccattgaagctggggaccatct i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859523 81 + 4466143 tgaaaatgcatttaatatcccgataaacccattgtaaagttgaaacaacctaagtggaaccattgaagctggggaccatct i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1566146 80 + 5364348 tgaaaatgcatttactactcctaTAAa-ccattgtaaagttgaaaaatcctaagtggaaccactgaagctggggaccacct i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4292051 81 + 7922563 TGAAAATGCATTTAATACcccaataaacccattggaaagttgaaaaatcataagtcaaactattgtaagtcaggactatct i otoGar3.GL873618 I 647 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825396 0 - 1116856 C e canFam3.chr26 33149066 0 - 38964690 C a score=39321.000000 s hg38.chr12_KI270834v1_alt 55660 3 + 119498 gTA s panTro5.chr12 127341737 3 + 137163284 gTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692552 3 + 135337776 gTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205924 3 - 8369578 gTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853853 3 + 106955855 gTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123979140 3 + 133663169 gTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128226523 3 + 137757926 gTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10626163 3 - 16319837 gTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248934 3 + 20526591 gTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119221300 3 + 128539186 gTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544872 3 + 6255621 gTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4598206 3 - 8658521 gTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114800272 3 + 124281992 gTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444639 3 - 9212255 gTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859604 3 + 4466143 gTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1566226 3 + 5364348 gTA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4292132 3 + 7922563 gTA i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 825396 3 - 1116856 CTA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33149066 0 - 38964690 C a score=2195136.000000 s hg38.chr12_KI270834v1_alt 55663 182 + 119498 TTGCTTTGTTTTTAGGATGGAGA----------ATGTCAGATCAAGTTAGAAAGTCAAATACAAGCACATCCTGTGAACGGTGATGTGTGTTCATATGG-GGAGGGCTTGGCCCAAACCTCAGTGCACCCATAGTATGGGGCTGGCAATTTGCTGGC-------TGCCATATCTGCACAGCC----TGCACACACAGATCTGGG s panTro5.chr12 127341740 182 + 137163284 TTGCTTTGTTTTTAGGATGGAGA----------ATGTCAGATCAAGTTAGAAAGTCAAATACAAGCACATCCTGTGAACGGTGATGTGTGTTCATATGG-GGAGGGCTTGGCCCAAACCTCAGTGCACCCATAGTATGGGGCTGGCAATTTGCTGGC-------TGCCATGTCTGCACAGCC----TGCACACACAGATCTGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692555 182 + 135337776 TTGCTTTGTTTTTAGGATGGAGA----------ATGTCAGATCAAGTTAGAAAGTCAAATACAAGCACATCCTGTGAACGGTGATGTGTGTTCATATGG-GGAGGGCTTGGCCCAAACCTCAGTGCACCCATAGTATGGGGCTGGCAATTTGCTGGC-------TGCCATATCTGCACAGCC----TGCACACACAGATCTGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8205927 181 - 8369578 TTGCTTTGTTTTTAGGATGGAGA----------ATGTCAGATCAAGTTAGAAAGTCAAATACAAGCACATCCTGTGAACGGTGATGTGTGTTCATAT-G-GGAGGGCTTGATCCAAACCTCAGTGCACCCATAGTATGGGGCTGGCAATTTGCTGGC-------TGCCATATCTGCACAGCC----TGCACACACAGATCTGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97853856 180 + 106955855 TTGCTTTGTTTTTAGGATGGAGA----------ATGTCAGATCAAGTTAGAAAGTCAAATACAAGTACATCCTGTGAACGGTGATGTGTGTTCATATGG-GGAGGGCTTGGCTCAAACCTCAGTGCACCCATAGTATGGGGTTGGCAATTTGCTGGC-------TGCCATATCTGCACAGCC----TG--CACACAGATCTGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123979143 182 + 133663169 TTGTCTTGTTTTTAGGATGGAGA----------ATGTCAGATCAAGTTAGAAAGTCAGATACAAGCAAATCCTGTGAACGGTGATGTGTGTTCATATGG-GGAGGGCTTGGCCCAAACCTCAGTGGACCCATCATATGGGGCTGGCAATTTGCTGGC-------TGCCATATCTGCACAGCC----TGCACACACAGATCTGGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128226526 182 + 137757926 TTGTCTTGTTTTTAGGATGGAGA----------ATGTCAGATCAAGTTAGAAAGTCAGATACAAGCAAATCCTGTGAACGGTGATGTGTGTTCATATGG-GGAGGGCTTGGCCCAAACCTCAGTGGACCCATCATATGGGGCTGGCAATTTGCTGGC-------TGCCATATCTGCACAGCC----TGCACACACAGATCTGGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10626166 182 - 16319837 TTGTCTTGTTTTTAGGATGGAGA----------ATGTCAGATCAAGTTAGAAAGTCAGATACAAGCAAATCCTGTGAACGGTGATGTGTGTTCATATGG-GGAGGGCTTGGCCCAAACCTCAGTGGACCCATCATATGGGGCTGGCAATTTGCTGGC-------TGCCATATCTGCACAGCC----TGCACACACAGATCTGGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12248937 186 + 20526591 TTGTCTTGTTTTTAGGATGGAGA----------ATGTCAGATCAAGTTAGAAAGTCAGATACAAGCAAATCCTGTGAACGGTGATGTGTGTTCATATGG-GGAGGGCTTGGCCCAAACCTCAGTGGACCCATCATATGGGGCTGGCAATTTGCTGGC-------TGCCATATCTGCACAGCCTGTGTGCACACACAGATCTGGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119221303 182 + 128539186 TTGTCTTGTTTTTAGGATGGAGA----------ATGTTAGATCAAGTTAGAAAGTCAGACACAAGCAAATCCTACGAACGGTGATGTGTGTTCATATGG-GTAGGGCTTGGCCCAAACCTCAGTGGACCTATCATATGGGGCTGGCAATTTGCTGGC-------TGCCATATCTGCACAGCC----TGCACACACAGATCTGGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 544875 182 + 6255621 TTGTCTTGTTTTTAGGATGGAGA----------ATGTCAGATCAAGTTAGAAAGTCAGATACAAGCAAATCCTGTGAACGGTGATGTGTGTTCATATGG-GGAGGGCTTGGCCCAAACCTCAGTGGACCCATCATATGGGGCTGGCAATTTGCTGGC-------TGCCATATCTGCACAGCC----TGCACACACAGATCTGGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4598209 182 - 8658521 TTGTCTTGTTTTTAGGATGGAGA----------ATGTCAGATCAAGTTAGAAAGTCAGATACAAGCAAATCCTGCAAACGGTGATGTGTGTTCATATGG-GGAGGGCTTGGCCCAAACCTCAGTGGACCCATCATATGGGGCTGGCAGTTTGCTGGC-------TGCCATATCTGCACAGCC----TGCACACACAGATCTGGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114800275 182 + 124281992 TTGTCTTGTTTTTAGGCTGGAGA----------ATGTCAGATCAAGTTAGAAAGTCAAACACAAGCAAATCCCTTGGAAGGTGATGTGTGTTCCTATGG-GGAGGGCTTGGCCCGAACCTCAGTGGACCCGTCCTATGGGGTTGGCAATTTGCTGGC-------TGCCGTATCTGCACAGCC----TGCGTCCACAGATCTGGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444642 182 - 9212255 TTGTCTTGTTTTTAGGCTGGAGA----------ATGTCAGATCAAGTTAGAAAGTCAAACACAAGCAAATCCCTTGGAAGGTGATGTGTGTTCCCATGG-GGAGGGCTTGGCCCAAACCTCAGTGGACCCATCCTATGGGGTTGGCAATTTGCTGGC-------TGCCATATGTGCATAGCC----TGCACCCATAGATCTGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859607 182 + 4466143 TTGCCTTGTTTTTAGGCTGGAGA----------ATGTCAGATCAAGTTGGAAAGTCAAACACAAGCAAATCCCTTGGAAGGGGATGTGTGTTCCTATGA-GGAGGGCTTGGCCCAAACCTCAGTGGACCCCTCCTATGGGGTTGGCAATTTGCTGGC-------TGCCATATCTGCACAGCC----TGCACTCACCGCTCTGGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1566229 182 + 5364348 TTGTCTGGTTTTTAGGCTGGAGA----------ATGTCAGATCAAGTTAGAAATGCAAACACAAGCAAATCCCTTGGAAGGTGATGTGTGTTCCTATGG-GGAGGGCTTGGCCTACACCTCAGTGGATCCGTCCTATGGGGCTGGCGATTTGCTGGC-------TGCTGTATCTGCACAGCC----TGCACCCACAGATCTGGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4292135 186 + 7922563 TCACATGGTTTTTAGAAGGGAGAATATGAGAATATGTCAAATCAAGTTCAAAAATCAAATATAAACAAGTCCTGTGAATTGTGGTGTGTGTT-GTGTGA-TGGAGGCTTGGCCCAGATCTTAGGGCACTCATTGTATCAGGTCAGCAATTAGCTAGC-------TGCTCTATCAGTACAACT----GGCACACACGGC-----G i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33149066 191 - 38964690 TTGTATTATTTTTGGAATGGAGA--------CTATGTGAAATCAAATTTGAAAGTCAAATAAGAGCAAATCTTGTGGTTTGTGGCACATACTCATATGGAGGAGGGATTGGCCCAAACCTCCATGGACCCAGCAT-TCAGGTCAGCAATTTGCCAGCTGCTGTATGCTGTATCTGCACAACC----AGCCCTCACAATTCTGGG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 825399 164 - 1116856 TTGTATTTTTTTTGGAACGGAGA----------ATGTCAGATCAAGTTCAGAAGTTAAATGCAAGAAAATTTTGTAAGCTGTAACATGCATTCACATGGAAGAAGGCTTGGCCCAAACCTCAGTGGACCTGGTGTACGGTACTAGCAACCTGCATGC-------------------ACCACC-----------ACAGCTCTGGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I a score=127075.000000 s hg38.chr12_KI270834v1_alt 55845 10 + 119498 TTAATCTTAG s panTro5.chr12 127341922 10 + 137163284 TTAATCTTAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692737 10 + 135337776 TTAATCTTAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8206108 10 - 8369578 TTAATCTTAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97854036 10 + 106955855 TTAATCTTAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123979325 10 + 133663169 TTAATCTTAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128226708 10 + 137757926 TTAATCTTAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10626348 10 - 16319837 TTAATCTTAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12249123 10 + 20526591 TTAATCTTAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119221485 10 + 128539186 TTAATCTTAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 545057 10 + 6255621 TTAATCTTAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4598391 10 - 8658521 TTAATCTTAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114800457 10 + 124281992 TTAATCTTAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444824 10 - 9212255 TTAATCTTAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859789 10 + 4466143 TTAATCTTAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1566411 10 + 5364348 TTAATCTTAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4292321 10 + 7922563 TTAAGCTTAG i otoGar3.GL873618 C 0 I 15 s canFam3.chr26 33149257 10 - 38964690 CCATTCTTAG i canFam3.chr26 C 0 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825563 0 - 1116856 C a score=1367139.000000 s hg38.chr12_KI270834v1_alt 55855 137 + 119498 AATCTTGTAttttta---------------------------------aacagctttactgagattgaattca-agaccatacaatccacacattcaaagcatacaagccagtgcttgttggcacattcacagatctgtgcaaccag-accacagtctactttagaacactt s panTro5.chr12 127341932 137 + 137163284 AATCTTGTAttttta---------------------------------aacagctttactgagattgaattca-agaccatacaatccacacattcaaagcatacaagccagtgcttgttggcacattcacagatctgtgcaaccag-accacagtctactttagaacactt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692747 137 + 135337776 AATCTTGTAttttta---------------------------------aacagctttactgagattgaattca-agaccatacaatccacacattcaaagcatacaagccagtgcttgttggcacattcacagatctgtgcaaccag-accacagtctactttagaacactt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8206118 137 - 8369578 AATCTTGTAttttta---------------------------------aacagctttactgagattgaattca-agaccatacaatccacacattcaaagcatacaagccagggcttgttggcacattcacagatctgtgcaaccag-accacagtctactttagaacactt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97854046 137 + 106955855 AATCTTGTAttttta---------------------------------aacagctttactgagatcgaattca-agtccgtacaatccacacattgaaagcatacaagccaatgcttgttggcacattcacagatctgtgcaaccag-accacagtctactttagaacactt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123979335 138 + 133663169 AATCTTGTAttttta---------------------------------aacagctttactgagatcgaattca-agaccatacaatccacacattcaaagcatacaagccagtgcttgttggcacattcacagatctgtgcaaccagcaccactgtctactttagaacattt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128226718 138 + 137757926 AATCTTGTAttttta---------------------------------aacagctttactgagatcgaattca-agaccatacaatccacacattcaaagcatacaagccagtgcttgttggcacattcacagatctgtgcaaccagcaccactgtctactttagaacattt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10626358 138 - 16319837 AATCTTGTAttttta---------------------------------aacagctttactgagatcgaattca-agaccatacaatccacacattcaaagcatacaagccagtgcttgttggcacattcacagatctgtgcaaccagcaccactgtctactttagaacattt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12249133 138 + 20526591 AATCTTGTAttttta---------------------------------aacagctttactgaaatcgaattca-agaccatacaatccacacattcaaagcatacaagccagtgcttgttggcacattcacagatctgtgcaaccagcaccactgtctactttagaacactt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119221495 138 + 128539186 AATCTTGTAttttta---------------------------------aacagctttactgagatcgaattca-agaccatacaatctacacattcaaagcatacaagcccgtgcttgttggcacattcacagatctgtgcaaccagcaccactgtctgctttagaacattt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 545067 138 + 6255621 AATCTTGTAttttta---------------------------------aacagctttactgagatcgaattca-agaccatacaatccacacattcaaagcatataagccagtgcttgttggcacattcacagatctgtgcaaccagcaccactgtctactttagaacactt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4598401 138 - 8658521 AATCTTGTAttttta---------------------------------aacagctttactgagatggaattca-agaccatacaatccacacattcaaagcatataagccagtgcttgttggcacattcacaaatctgtgcaaccagcaccagtgtctactttagaaccctt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114800467 138 + 124281992 AATCTTTTAttttta---------------------------------aacagttttactgagattgaattca-agaccatgcaatctgcgcattcagagcatacaaaccagtgcttttcggcgtattcacagatctgtgcaaccatcaccacagaatactttagagcattt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444834 138 - 9212255 AATCTTTTAttttta---------------------------------aacagttttactgagattgaattca-agaccatgcaatctgcgcattcaaagcatacaaaccagtgctttttggcgtattcacggatctgtgccaccatgaccacagaatcctttagatcattt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859799 138 + 4466143 AATCTTTTAttttta---------------------------------aacagttttactgagattgaattca-agaacaggcaatctgcacattcaaagcacacaaaccagtgctttccggtgtgttcacagaactgtgcaaccatcaccacagaatactttagagcattt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1566421 138 + 5364348 AATCTTTTAttttta---------------------------------aacagttttactgagattgaattca-agaccatgcagtctgtgcattcagagcatacaaaccagtgcttttcggcatagtcacagatctgtgcaaccatcaccacagaatactttagagcattt i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33149267 148 - 38964690 AATC-----TCTTTaaaacaaaacaaaacaaaacaaaaAAACCCAAACaacagctttattgagatgtaattcacaggccatacaattcacccat-------gtgcgattcagtgctctttggtgtgttcacagatc------------accatagtctattgggggacattt i canFam3.chr26 C 0 I 10 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825563 0 - 1116856 C e otoGar3.GL873618 4292331 15 + 7922563 I a score=751496.000000 s hg38.chr12_KI270834v1_alt 55992 82 + 119498 ctgtggcttcggcc---gggcgtggtgg--ctcataccagtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtc s panTro5.chr12 127342069 82 + 137163284 ctgtggcttcggcc---gggcgtggtgg--ctcacaccagtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692884 82 + 135337776 ctgtggcttcggcc---gggcgtggtgg--ctcacaccagtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8206255 82 - 8369578 ctgtggcttcggcc---gggcgtggtgg--ctcacaccagtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97854183 82 + 106955855 ctgtggcttcagcc---gggcaccgtgg--ctcacacctgtaatcccagcactttgggaggctgaggcgggtgggtcacttgaggtc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123979473 82 + 133663169 ctgtggtgtcggcc---aggcgcggtgg--ctcacacctgtaatcccagcactttgggaggccgaggcaggtgggtcacttgaggtc i rheMac8.chr11 C 0 I 12 s macFas5.chr11 128226856 82 + 137757926 ctgtggtgtcggcc---aggcgcggtgg--ctcacacctgtaatcccagcactttgggaggccgaggcaggtgggtcacttgaggtc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10626496 82 - 16319837 ctgtggtgtcggcc---aggcgcggtgg--ctcacacctgtaatcccagcactttgggaggccgaggcaggtgggtcacttgaggtc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12249271 82 + 20526591 ctgtggtgtcagcc---aggcgcggtgg--ctcacacctgtaatcccagcactttgggaggccgaggcaggtgggtcacttgaggtc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119221633 82 + 128539186 ctgtggcgtcggcc---gggcacggtgg--ctcacacctgtaatcccagcactttgggaggccgaggcaggtgggtcacttgaggtc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 545205 82 + 6255621 ctgtggtgtcggcc---aggcgcggtgg--ctcacacctgtaatcccagcactttgggaggccgaggcaggtgggtcacttgaggtc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4598539 84 - 8658521 ctgtggcgtcggcc---gggcgcggtggcccccacacctgtaatcccagcactttgggaggccgaggcgggtgggtcacttgaggtc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114800605 84 + 124281992 ttgcagcattggccacaaaatgtggtgg--ttcatgcctgtaatcccagcactttggt-ggccggggcagatggatcacttgaggtc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 444972 85 - 9212255 ttgtggcatcggccacaaaatgtggtgg--ttcatgcctgtaatcccagcactttgggaggccgaggcaggtgaatcacttgaggtc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2859937 85 + 4466143 ttgtggcatcggccacaaaatgtggtgg--ttcatgcctgtaatcccagcactttgggaggccgaggcaggggaatcacttgaggtc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1566559 84 + 5364348 ttgtggcatcggccacaaaatgtggtgg--ttcacgcctgtaatcccagcacttggga-ggccgaggcaggtggatcacttgaggtc i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825563 0 - 1116856 C e canFam3.chr26 33149415 10 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=65383.000000 s hg38.chr12_KI270834v1_alt 56074 15 + 119498 aggagttcatcatca s panTro5.chr12 127342151 15 + 137163284 aggagttcatcatca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692966 15 + 135337776 aggagttcatcatca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8206337 15 - 8369578 aggagttcgtcatta i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97854265 15 + 106955855 aggagttcgtgacca i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128226938 12 + 137757926 aagagttcgtga--- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10626578 12 - 16319837 aagagttcgtga--- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12249353 12 + 20526591 aagagttcgtga--- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119221715 12 + 128539186 aagagttcatga--- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 545287 12 + 6255621 aagagttcgtga--- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4598623 12 - 8658521 aagagttcgtga--- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114800689 15 + 124281992 aggagttcgagacca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 445057 15 - 9212255 aggagttccagacca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2860022 15 + 4466143 aagagttcgagacca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1566643 15 + 5364348 aggagttcgagacca i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825563 0 - 1116856 C e canFam3.chr26 33149415 10 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I e rheMac8.chr11 123979555 12 + 133663169 I a score=1744432.000000 s hg38.chr12_KI270834v1_alt 56089 242 + 119498 cccttgccaacatggtgaaaccccgtctctactaaaaataaaaaaatgatccaggcatggtggcacgcacctgtaatcccagctactcgga-ggctgaggc--aggagaatcacttgaacctgggag-gcaga-ggttgcagtgagct-gaggtcatgccgcagcactccagcctgggagacagagtaagactctgtcaaaaaaaaaaaaaaaaaaaaa----------aaaaagaaca-ttttgtggtttc--aaaaaga s panTro5.chr12 127342166 224 + 137163284 cccttgccaacatggtgaaaccctgtctctactaaaaataaaaaaatgatccaggcatggtggcacgcacctgtaatcccagctactcgga-ggctgaggc--aggagaatcacttgaacctgggag-gcaga-ggttgcagtgagct-gaggtcatgccgcagcactccagcctgggagacagagtaagactctgtc------------------aaa----------aaaaagaaca-ttttgtggtttc--aaaaaga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125692981 224 + 135337776 cccttgccaacatggtgaaaccctgtctctactaaaaataaaaaaatgatccaggcatggtggcacgcacctgtaatcccagctactcgga-ggctgaggc--aggagaatcacttgaacctgggag-gcaga-ggttgcagtgagct-gaggtcatgccgcagcactccagcctgggagacagagtaagactctgtc------------------aaa----------aaaaagaaca-ttttgtggtttc--aaaaaga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8206352 234 - 8369578 cccttgccaacatggtgaaaccccgtctctactaaaaataaaaaaatgatccaggcatggtggcacgcacctgtaatcccagctgctcgga-ggctgaggc--aggagaatcacttgaacctgggag-acaga-ggttgcagtgagct-gaggtcgtgctgcagcactccagcctgggagacagagtaagactctgtc--------aaaaaaaaaaaaa----------aaaaagaaca-ttttgtggtttc--aaaaaga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97854280 236 + 106955855 cccttgccaacatagtgaaaccctgtctctactaaaaacaaaaaaaatatccaggcgtggtggcacgcacctgtaatcccagctactcaga-ggctgaggc--gggagaatcacttgaacctgggag-gcaga-ggttgcagtgagct-gagatcatgccacagcactccagcctgggagacagagtaagactctgtcaaaaaaaaaaaaaaaaaaaaa----------aaaaagaaca-ttctgtggtttc--------a i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123979567 222 + 133663169 cccttgccaacatggtgaaatcca--ttctact--aa--taaaaaaatatccaggcatgtgagcacgcatcttaaatcccaattactcagagggctgaggccaggaggaatcacttgaacctgggagcagagg-ggttgcagtaagctggagattgtgccctagcactcc-gcctggagaaggagttgagactct-tc-------------aaaaaaaa----------aaagaaaacg-ttttg-gtattc--aaa---a i rheMac8.chr11 I 12 C 0 s macFas5.chr11 128226950 230 + 137757926 cccttgccaacatggtgaaatcccatctctactaaaa--taaaaaattatccaggcatggtagcacgcatctgtaatcccaattactcaga-ggctgaggc--aggagaatcacttgaacctgggag-gcaga-ggttgcagtaagct-gagattgtgccatagcactccagcctgggagacagagtgagactctgtc-------aaaaaaaaaaaaaa----------aaaaagaacg-ttttgtggtttc--aaa---a i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10626590 229 - 16319837 cccttgccaacatggtgaaatcccatctctactaaaa--taaaaaattatccaggcatggtagcacgcatctgtaatcccaattactcaga-ggctgaggc--aggagaatcacctgaacctgggag-gcaga-ggttgcagtaagct-gagattgtgccatagcactccagcctgggagacagagtgagactctgtc--------aaaaaaaaaaaaa----------aaaaagaacg-ttttgtggtttc--aaa---a i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12249365 227 + 20526591 cccttgccaacatggtgaaatcccatctctactaaaa--taaaaaattatccaggcatggtagcacacatctgtaatcccagctactcaga-ggctgaggc--aggagaatcacttgaacctgggag-gcaga-ggttgcagtaagct-gagattgtgccatagcactccagcctgggagacaaagtgagactctgtc----------aaaaaaaaaaa----------aaaaagaacg-ttttgtggtttc--aaa---a i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119221727 178 + 128539186 cccttgccaacatggtgaaatcccatctctactaaaa--taaaaaattatccaggcgtggtagcacgcatctgtaatcccagctactcaga-ggctgaggc--aggagaatcacttgaacctgggag-gcaga-ggttgcagtaagct-gagattgtgccatagcactcc----------------------------------------------------------------------ttttgtggtttc--aga---a i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 545299 229 + 6255621 cccttgccaacatggtgaaatcccatctctactaaaa--taaaaaattatccaggcatggtagcacgcatctgtaatcccagctactcaga-ggctgaggc--aggagaatcacttgaacctgggag-gcaga-ggttgcagtaagct-gagattgtgccatagcactccagcctgggagacagagtgagactctgtc----------aaaaaaaaaaa----------aaaaagaacg-ttttgtggtttcaaaaa---a i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4598635 219 - 8658521 cccttgccaacatagtgaaatcccatctctactgaaa--taaaaaattatccaggcatggtggtgcgcatctgtaatcccagctactcaga-ggctgaggc--aggagaatcacttgaacctgggag-gcaga-ggttgcagtgagct-gagattgtgccatagcactccagcctgggagacagagtgaa------------------aaaaaaaaaaa----------aaaaagaacg-ttttgtggtttc--aaa---a i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114800704 222 + 124281992 gctttgccaacatggtgaaaccccatctctgctaaaaatacaaaaattagccaggcatggtgacaagcacctgtaattccagctcctcaga-ggctgaggc--atgggcattgcttgaacctgggag-gcggagggttgcagt-ggct-gagatcgtgccaaagcactccagcctgggctacagagcaagattctgtc---------------aaaaaa----------gacaaaaacatttttgtggcttc--------a i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 445072 221 - 9212255 gccttgccaacatggtgaaaccccgtctctgctaaaaatacaaaaaatagccaggcatggtgacaagcatctgtaatcgcagctcctcgga-ggctgaggc--aagggaattgcttgagcctgtgag-gcaga-ggttgcagtgggct-gagatcatgcgaaagcactccagcctgggcaacagagcaagattctgtc---------------aaaaca-----------acaaaaacatttttgtgtcttc--------a i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2860037 232 + 4466143 gccttgccaacatcgtgaaaccccgtctctgctaaaaatataaaaattagccaggcgtggtgacaagcacctgtaatcccagctcctcgga-ggctgaggc--aagggaattgcttgaacctgtgag-gcgga-ggttgcagtgagct-gagatcatgccaaagcactccatcctgggcgacggagcaagattctgtc---------------aaaaaaaacaacaaaaaacgaaaacgtttttgtggcctc--------a i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1566658 222 + 5364348 gccttgccaacatggtgaaaccccgtctctgctaaaaatacaaaaattagccaggcatggtgacgagcacctgtaatcccagctcctcaga-ggctgaggc--aagggaattgcttgaacctgggag-gcgga-ggttgcagtgagct-gagatcgtgccaaagcactccagcctgggcaacagagcaagattctgtc---------------aaaaaa----------aacaaaaacatttttgtggcttc--------a i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825563 0 - 1116856 C e canFam3.chr26 33149415 10 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=1735353.000000 s hg38.chr12_KI270834v1_alt 56331 192 + 119498 aaaagaaatcccatgcccttt----agtgatcaccaccctgacctctgcaccctcccctcatcaagccctgagcaactaacggactaatctgctttctgtctctatagtcttcctattctagactttcatgtgaatagt----gtgtgtgtctattttgtgtctggtatctttcttttagcacagtgctttcaaagttca s panTro5.chr12 127342390 192 + 137163284 aaaagaaatcccatgcccttt----agtgatcaccaccctgacctctgcaccctcccctcatcaagccctgagcaactaacggactaatctgctttctgtctctatagtcttcctattctagactttcatgtgaatagt----gtgtgtgtctattttgtgtctggtatctttcttttagcacagtgctttcaaagttca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125693205 188 + 135337776 aaaagaaatcccatgcccttt----agtgatcaccaccctgacctctgcaccctcccctcatcaagccctgagcaactaacggactaatctg----ctgtctctatagtcttcctattctagactttcatgtgaatagt----gtgtgtgtctattttgtgtctggtatctttcttttagcacagtgctttcaaagttca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8206586 192 - 8369578 aaaagaaatcccctgcccttt----agtgatcaccaccctgacctctgcaccctcccctcatcaagccctgagcaactaacggactaatctgctttctgtctctatagtcttcctattctagactttcatgtgaatagt----gtgtgtgtctattttgtgtctggtatctttcttttagcacagtgctttcaaagttca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97854516 196 + 106955855 aaaagaaatcccatgccctttataaagtgatcaccgccctgacctccgcaccctcccctcatcgagccccgagcaaccaacggactaatctgccttctgtctctatagtcttcctattctagactttcatgtgaatagt----gtgtgtgtctgttttgtgtctggtgtctttcttttagcacagtgctttcaaagttca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123979789 191 + 133663169 aaaagaaatcccatgcccttt----agtgatcactgccctaatctctgcaccctcccctcatcgagccctgagcaactaat-gactaatctactttctgtctctataggcttcctattctagactttcatgtgaaaagt----gtgtgtgtgtattttgtgtctggcgtctttcttttagcacaatgctttcaaagttca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128227180 191 + 137757926 aaaagaaatcccatgcccttt----agtgatcactgccctaatctctgcaccctcccctcatcgagccctgagcaactaat-gactaatctactttctgtctctataggcttcctattctagactttcatgtgaaaagt----gtgtgtgtgtattttgtgtctggcgtctttcttttagcacaatgctttcaaagttca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10626819 191 - 16319837 aaaagaaatcccatgcccttt----agtgatcactgccctaatctctgcaccctcccctcatcgagccctgagcaactaat-gactaatctactttctgtctctataggcttcctattctagactttcatgtgaaaagt----gtgtgtgtgtattttgtgtctggcgtctttcttttagcacaatgctttcaaagttca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12249592 191 + 20526591 aaaagaaatcccatgcccttt----agtgatcactgccctaatctctgcaccctcccctcatcgagccctgagcaactaat-gactaatctactttctgtctctataggcttcctattctagactttcatgtgaaaagt----gtgtgtgtgtattttgtgtctggcgtctttcttttagcacaatgctttcaaagttca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119221905 191 + 128539186 aaaagaaatcccatgcccttt----agtgatcactgccctaatctctgcaccctcccctcattgagccctgagcaactaat-gactaatctactttctgtctctataggcttcctattctagactttcatgtgaaaagt----gtgtgtgtgtattttatgtctggcgtctttcttttagcacaatgctttcaaagttca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 545528 191 + 6255621 aaaagaaatcccatgcccttt----agtgatcactgccctaatctctgcaccctcccctcatcaagccctgagcaactaat-gactaatctactttctgtctctataggcttcctattctagactttcatgtgaaaagt----gtgtgtgtgtattttgtgtctggcgtctttcttttagcacaatgctttcaaagttca i manLeu1.NW_012103587v1 C 0 I 6174 s colAng1.NW_012116043v1 4598854 191 - 8658521 aaaagaaatcccatgctcttt----agtgatcaccaccctaatctctgcaccctcccctcattgagccctgagcaactaat-gactaatctactttctgtctctataggcttcctattctagactttcacgtgaaaagt----gtgtgtgtctattttgtgtctggcgtctttcttttagcacaatgctttcaaagttcg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114800926 172 + 124281992 agaagaaatcccatgcccttt----agtgattaccgccctgatctctgcaccctcccctcactgagccctaagccactaac-tactaatctgctttctgtc-ctatcatcttcctgttctggactttcatatgaacagt----gtgtgtgtccattttgtgtctggcatctttttt------------------agttca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 445293 169 - 9212255 agaagaaatcccatgtccttt----agtgattaccg-cctgatctctgcaccttcccctcactgagccctaagcaactaac-tactaatctgctttctgtc-ctatcgtcttcctgttctagcctttcatatgaatagt----gtgtgtgtctgtgttgtgtctggcatc--tttt------------------agttca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2860269 172 + 4466143 agaagaaatcccatgcccttt----agtgattaccaccctgatctctgcaccctctgctcgctgagcactgagcaactagc-tactaatctgctttctgtg-gtatcgtctccctgttctagactttcatatgaacagt----gtgtgtgtctattttgtgtctggcatctttttt------------------agttca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1566880 172 + 5364348 agaagaaatcccatgcccttt----agtgattaccgcccggatgtctgcaccctcccctcactgagccctaagcaactaac-tactaatctgctttctgtc-ctatcatcttcctgttctagactttcatatgaatagt----gtgtgtgtctattttgtgtctggcatcttttgt------------------agttca i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33149425 171 - 38964690 aaaagacatcctacatacttt----agc--------------tttctg------cccctcacccagccctaaaaaag-----cactcatctatttcctgtctctccggataccctatcctggattctcatgaatagaatcatagagtacgtgatcttctttgacagcttctctcacttagcgtaatgctttcaggtacca i canFam3.chr26 I 10 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825563 0 - 1116856 C e otoGar3.GL873618 4292331 15 + 7922563 I a score=157547.000000 s hg38.chr12_KI270834v1_alt 56523 25 + 119498 tgttgtagcatacatcggtacttc-----a s panTro5.chr12 127342582 25 + 137163284 tgttgtagcatacatcggtacttc-----a i panTro5.chr12 C 0 C 0 s panPan2.chr12 125693393 25 + 135337776 tgttgtagcatacatcggtacttc-----a i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8206778 25 - 8369578 tgttgtagcttacataggtacttc-----a i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97854712 25 + 106955855 tgttgcagcatgcgtcggtgactc-----a i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123979980 25 + 133663169 cgttgtagcatgcatcggtatttc-----a i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128227371 25 + 137757926 cgttgtagcatgcatcggtatttc-----a i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10627010 25 - 16319837 cgttgtagcatgcatcggtatttc-----a i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12249783 25 + 20526591 cgttgtagcacgcatcggtatttc-----a i cerAty1.NW_012001186v1 C 0 I 2 s chlSab2.chr11 119222096 25 + 128539186 cgttgtagcacgcatcggtatttc-----a i chlSab2.chr11 C 0 I 1 s colAng1.NW_012116043v1 4599045 25 - 8658521 tgttgtagcacacatcggtatttc-----a i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114801098 23 + 124281992 tgttgca-cgtgtatcagtacttc------ i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 445462 30 - 9212255 tgttgcagtgtgtatcagtgcttctttttt i saiBol1.JH378194 C 0 I 8 s cebCap1.NW_016107484v1 2860441 24 + 4466143 tgttgcagcgtatatcagtacttc------ i cebCap1.NW_016107484v1 C 0 I 6 s aotNan1.NW_018491581v1 1567052 25 + 5364348 tgttgcagcgtgtatcagtacttc-----a i aotNan1.NW_018491581v1 C 0 I 8 s canFam3.chr26 33149596 19 - 38964690 ------tccatgtatcagcagttc-----c i canFam3.chr26 C 0 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825563 0 - 1116856 C e otoGar3.GL873618 4292331 15 + 7922563 I e manLeu1.NW_012103587v1 545719 6174 + 6255621 I a score=2316268.000000 s hg38.chr12_KI270834v1_alt 56548 261 + 119498 -ttttttttttgccaaataggaggccctcgtgtggctatgccacgtttcctttatccact--------gctgggcgtgtttgttg---tttccacctgttggcttttgtggacagtgctgctgtgagctttcatgcacaagtttctgtgtggacatgtgtttgcattgctcttgagtatgctcctacaagtggaattgcgggatcctatgataactc-tatgtttaattgtttgaggaacctccagggt----------gtggctgcaccgttttccattccta s panTro5.chr12 127342607 261 + 137163284 -tttttcttttgccaaataggaggccctcgtgtggctatgccacgtttcctttatccact--------gctgggcatgtttgttg---tttccacctgttggcttttgtggacagtgctgctgtgagctttcatgcacaagtttctgtgtggacatgtgtttgcattgctcttgagtatgctcctacaagtggaattgcgggatcctatgataactc-tatgtttaattgtttgaggaacctccagggt----------gtggctgcaccattttccattccta i panTro5.chr12 C 0 C 0 s panPan2.chr12 125693418 261 + 135337776 -tttttcttttgccaaataggaggccctcgtgtggctatgccacgtttcctttatccact--------gctgggcatgtttgttg---tttccacctgttggcttttgtggacagtgctgctgtgagctttcatgcacaagtttctgtgtggacatgtgtttgcattgctcttgagtgtgctcctacaagtggaattgcgggatcctatgataactc-tatgtttaattgtttgaggaacctccagggt----------gtggctgcaccattttccattccta i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8206803 261 - 8369578 -ttttttttttgccaaataggaggccctcgtgtggctatgccacgtttcctttatccact--------gctgggcatgtttgttg---tttccacctgttggcttttgtggacagtgctgctgtgagctttcatgcacaagtttctgtgtggacgtgtgtttgcattgctcttgagtatgctcctacaagtggaattgcgggatcctatgataactc-tatgtttaattgtttgaggaatctccagggt----------gtggctgcaccgttttccattccga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97854737 260 + 106955855 -ttttt-ttttgccaaataggaggccctcgcgtggctatgccacgtttcctttatccact--------gctgggtatgtttgttg---tttccacctgttggcttttgtggacagtgctgctgtgagctttcatgcacaagtttctgtgtggacgtgtgtttgcattgctcttgagtatgctcctgcaagtggcattgcgggatcctatgataactc-tatgtttaatcgtttgaggaacctccagggt----------gtggctgcaccgttttccattccta i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123980005 259 + 133663169 --tttttttttgcc-aataggagtcgctcatgtggctatgccacgtttcctttatccact--------gctgggcctgtttgttg---tttccacctgttggcttttgtggacagtgctgctgtgaacttccatgcacaagtttctgtgtggatgtgagtttgcattgctcttgggtacgctcctacgagtggaattgcggggtcctatgataactc-tatgtttaatcgtttaaggaacctccagggt----------gtggctgcaccattttccattccta i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128227396 259 + 137757926 --tttttttttgcc-aataggagtcgctcatgtggctatgccacgtttcctttatccact--------gctgggcctgtttgttg---tttccacctgttggcttttgtggacagtgctgctgtgaacttccatgcacaagtttctgtgtggatgtgagtttgcattgctcttgggtacgctcctacgagtggaattgcggggtcctatgataactc-tatgtttaatcgtttaaggaacctccagggt----------gtggctgcaccattttccattccta i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10627035 259 - 16319837 --tttttttttgcc-aataggagtcgctcatgtggctatgccacgtttcctttatccact--------gctgggcctgtttgttg---tttccacttgttggcttttgtggacagtgctgctgtgaacttccatgcacaagtttctgtgtggatgtgagtttgcattgctcttgggtacgctcctacgagtggaattgtggggtcctatgataactc-tatgtttaatcgtttaaggaacctccagggt----------gtggctgcaccattttccattccta i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12249810 260 + 20526591 -ttttttttttgcc-aataggagtcgctcatgtggctatgccacgtttcctttatccact--------gctgggcctgtttgttg---tttccacctgttggcttttgtggacagtgctgctgtgaacttccatgcacaagtttctctgtggatatgagtttgcattgctcttgggtacgctcctacgagtggaattgcggggtcctatgataactc-tatgtttaatcatttaaggaacctccagggt----------gtggctgcaccattttccattccta i cerAty1.NW_012001186v1 I 2 C 0 s chlSab2.chr11 119222122 260 + 128539186 -ttttttttttgcc-aataggagtcgctcatgtggctatgccacgtttcctttatccact--------gctgggcctgtttgttg---tttccacctgttggcttttgtggacagagctgctgtgaacttccatgcacaagtttctgtgtggatgtgagtttgcattgcttttgggtacgctcctactagtggaattgcggggtcctatgataactc-tatgtttaatcgtttaaggaacctccagggt----------gtggctgcaccattttccattccta i chlSab2.chr11 I 1 C 0 s manLeu1.NW_012103587v1 551893 260 + 6255621 -ttttttttttgcc-aataggagttgctcatgtggctatgccacgtttcctttatccact--------gctgggcctgtttgttg---tttccacctgttggcttttgtggacagtgctgctgtgaacttccatgcacaagtttctctgtggatatgagtttgcattgctcttgggtacgctcctacgagtggaattgcggggtcctatgataactc-tatgtttaatcgtttaaggaacctccagggt----------gtggctgcaccattttccattccta i manLeu1.NW_012103587v1 I 6174 C 0 s colAng1.NW_012116043v1 4599070 244 - 8658521 --tttttttttgcc-aataggagtccctcgtgtggctatg---------------ccact--------gctgggcctgtttgttg---tttccacctgctggcttttgtggacggtgctgccgtgagctttcatgcacaaatttctgtgtggatgtgagtttgcattgctcttgggtacgctcctacgagtggaattgcggggtcctatgataactc-tatgtttaatcatttaaggaacctccagggt----------gtggctgcaccgttttccattccta i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114801121 244 + 124281992 ---------aggcc-aggaagcctcccttgtctgactgtgcc-tgtttcctttacccatc--------gctggacac---tgctg---cttgcgcctgttggc-tttgtgaacagtgccgctgtgaactgccatg--ccgccttctgtgtggatgtgtgcttgcattgctcttagggatgctcctgggagcggaatggaggggccccatgatgagtc-tatgtttaatcatctgaggaagctccagggt----------gtggctgcactg-tttccattccta i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 445500 256 - 9212255 -tttttttttggcc-agtaagccttcctcgtatgtctgtgcc-tgtttcctttacccatc--------gctagacac---tgctgtgatttgcacctgttggcttttgtgaacagtgccgctgtgaactctcatg--ccacttgctgtgtggatgtgtgtttgcattgctcttggggatgctcctgggagcggaattgacggtccccatgatacatc-tatgtttaatcatctaagaaagctccagggt----------gtggctgcactg-tttctgttcctc i saiBol1.JH378194 I 8 C 0 s cebCap1.NW_016107484v1 2860471 256 + 4466143 -tttttttttgacc-aataagcttcccttgtatgactgtgcc-tgtttcctttatccatc--------gctggacac-tttattg---tttgcacctgttggcttttgtgaacagtgctgctgtgaactttcatg--ccacttgctgtgtggatgtgtgtttgcattgctcttggggatgctcctgggagtggaattgaggggccccatgataaatcttatgtttaatcatctaagaaagctccagggt----------gtggctgcactg-tttctgttcctc i cebCap1.NW_016107484v1 I 6 C 0 s aotNan1.NW_018491581v1 1567085 255 + 5364348 -tttttttttggcc-aataagcctcccttgtatgactgtgcc-tgtttcctttacccatc--------gctggacacttttgttg---ttcgcacctg-tggcttttgtgaacagtgctgctgtgaactttcatg--ccactttctgtgtggatgtgtgtttgcattgctcttggggatgctcctgggagcggaattgaggggccccatgataagtc-tatgtttaatcatctgaggaagctccagggt----------gtggctgcactg-tttccattccta i aotNan1.NW_018491581v1 I 8 C 0 s canFam3.chr26 33149615 278 - 38964690 ttcctttttgtgctgagtcatggtctgttgtctagattgaccacattctgttaatccattcatctctccatggccatgtgggttg---tttccaccttttggccattgtgaatggtgccactatgaacgtttacatataagtctctgtgtcaacaggtgttttcatgtctcttagagacacacctcacggtggaattgccaggtcatac-acaagtc-catgtttaatcattggag-aactgccagattgttttcccaagtgaccatatcattgtatagtccca i canFam3.chr26 C 0 C 0 e micMur3.chr21 9459558 1191 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825563 0 - 1116856 C e otoGar3.GL873618 4292331 15 + 7922563 I a score=365998.000000 s hg38.chr12_KI270834v1_alt 56809 33 + 119498 ccagcagcgt----------------ctgagggttcctgtttgtccaca s panTro5.chr12 127342868 33 + 137163284 ccagcagcgt----------------ctgagggttcctgtttgtccaca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125693679 33 + 135337776 ccagcagcgt----------------ctgagggttcctgtttgtccaca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8207064 33 - 8369578 ccagcagcgt----------------ctgagggttcctttttgtccaca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97854997 33 + 106955855 ccggcagcat----------------ctgagggttcctgtttgtccaca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123980264 33 + 133663169 tcagcagcat----------------ctgaaggttcccatttgtccaca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128227655 33 + 137757926 tcagcagcat----------------ctgaaggttcccatttgtccaca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10627294 33 - 16319837 tcagcagcat----------------ctgaaggttcccatttgtccaca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12250070 33 + 20526591 tcagcagcat----------------ctgaaggttcccatttgtccacG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119222382 33 + 128539186 tcagcagcat----------------ctgaaggttcccatttgtccaca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 552153 33 + 6255621 tcagcagcat----------------ctgaaggttcccatttgtccaca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4599314 33 - 8658521 ccagcagcat----------------ctgaaggttcccatttgtccaca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114801365 33 + 124281992 ccagcagcat----------------ctgagggttcctatttctccaca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 445756 33 - 9212255 ccagcagcgt----------------ctgagggttcctatttcttcaca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2860727 33 + 4466143 ccagcagcat----------------ctgagggttcctatttctccaca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1567340 33 + 5364348 tcagcagctt----------------ctgagggttcctatttctccgca i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9460749 33 - 31815103 ccagcagtgt----------------ctgcgggttcctgtttctccaGA i micMur3.chr21 I 1191 C 0 s canFam3.chr26 33149893 49 - 38964690 ccagcaccatggaggggcggagcggggggaaggttcctgtttctccacc i canFam3.chr26 C 0 C 0 e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825563 0 - 1116856 C e otoGar3.GL873618 4292331 15 + 7922563 I a score=707918.000000 s hg38.chr12_KI270834v1_alt 56842 69 + 119498 ccATTCTTAGAATCATACAGGTACCTCC-TGCAGGTTCCACAGGTAACTCACCTGCAAGGGGCCTCTCGA s panTro5.chr12 127342901 69 + 137163284 ccATTCTTAGAATCATACAGGTACCTCT-TGCAGGTTCCACAGGTAACTCACCTGCAAGGGGCCTCTCGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125693712 69 + 135337776 ccATTCTTAGAATCATACAGGTACCTCT-TGCAGGTTCCACAGGTAACTCACCTGCAAGGGGCCTCTCGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8207097 69 - 8369578 ccATTCTTAGAATCGTACAGGTACCTCC-TGCAGGTTCCACAGGTAACTCACCTGCAAGGGGCCTCTCGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97855030 69 + 106955855 ccGTTCTTAGAATCGTACAGGTACCTCC-TGCAGGTTCCACAGGTAACTCACCTGCAAGGGGCCTCTCGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123980297 70 + 133663169 ccGTTCTTAGAATCGTACAGGTACCTCCTTGCAGGTTGCACATGTAACTCATCCACAAGGGGCCTCTTGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128227688 70 + 137757926 ccGTTCTTAGAATCGTACAGGTACCTCCTTGCAGGTTGCACATGTAACTCATCCACAAGGGGCCTCTCGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10627327 70 - 16319837 ccGTTCTTAGAATCGTACAGGTACCTCCTTGCAGGTTGCACATGTAACTCATCCGCAAGGGGCCTCTCGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12250103 70 + 20526591 CCGTTCTTAGAATCGTACAGGTACCTCCTTGCAGGTTGCACATGTAACTCACCCGCAAGGGGCCTCTCGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119222415 70 + 128539186 ccATTCTTAGAATCGTACAGGTACCTCCTTGCAGGTTGCACGTGTAACTCACCCGCAAGGGGCCTCTCGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 552186 70 + 6255621 ccGTTCTTAGAATCGTACAGGTACCTCCTTGCAGGTTGCACATGTAACTCACCCGCAAGGGGCCTCCCGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4599347 70 - 8658521 ccATTCTTAGAATCATACAGTTATCTCCTTGCAGGTTGCACGTGTAACTCACCTGCAAGGGGCCTCTCGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114801398 66 + 124281992 GCATTCTTAGAATTATACAGGCGCCACT-TGCAGCTTCCACAGGTAACTCACCTGCA--GGGCCTCT-GA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 445789 67 - 9212255 CTGTTCGTAGAATTGTACAGGTACCGCT-CGCAGCTTCCACAGGTAACTCACCTGCA-GGGGCCTCC-GA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2860760 66 + 4466143 ccATTCTTAGAATTATACAGGTACCGCT--GCAGCTTCCACAGGTAACTCACCTGCA-GAGGCCTCT-GA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1567373 67 + 5364348 ccATTCTTAGAATTATACAGGTACCGCC-TGCAGCTTCCACAGGTAACTCACCTGCA-GAGGCCTCT-GA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9460782 67 - 31815103 CCGTTC-TAGAACTGTACAGGTGCCTCC-TGCAGTTTCCATGGGTGACTCACCTGCA-GGGCCCTCTCGA i micMur3.chr21 C 0 I 332 s canFam3.chr26 33149942 68 - 38964690 tcATTCTTAGAACCTTACAGTGAGCCCC-TGCTGTGGCCATTGGCAAGTCACCTGCA-GGGACCTCTCCA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 825563 67 - 1116856 CCACTCTCAGACTCTTACAGAGAGCTCC--CCACTTCCCACAGGTAACTCCCTCAAA-GGACACTCTTGA i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=580750.000000 s hg38.chr12_KI270834v1_alt 56911 66 + 119498 A--GTGGA-GCAGACACTATGCATTGAGATGTAATT-T-GAAGAAGAGTCATGTCCCTCATTCACCCTTTT s panTro5.chr12 127342970 66 + 137163284 A--GTGGA-GCAGACACTATGCATTGAGATGTAATT-T-GAAGAAGAGTCATGTCCCTCATTCACCCTTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125693781 66 + 135337776 A--GTGGA-GCAGACACTATGCATTGAGATGTAATT-T-GAAGAAGAGTCATGTCCCTCATTCACCCTTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8207166 66 - 8369578 A--GTGGA-GCAGACACTATGCATTGAGATGTAATT-T-GAAGAAGAGTCGTGTCCCTGATTCACCCTTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97855099 66 + 106955855 A--GTGGC-GCAGACACTATGCATTGAGACGTAATT-T-GAAGAAGAGTCATGTCCCTGATTCACCCTTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123980367 65 + 133663169 A--GTGGA-GCAGACACTGTGCATTGAGATGTAATT-T-GAAG-AGAGTCATCTTCCTGATTCACCCTTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128227758 65 + 137757926 A--GTGGA-GCAGACACTGTGCATTGAGATGTAATT-T-GAAG-AGAGTCATCTTCCTGATTCACCCTTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10627397 65 - 16319837 A--GTGGA-GCAGACACTGTGCATTGAGATGTAATT-T-GAAG-AGAGTCATCTTCCTGATTCACCCTTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12250173 65 + 20526591 A--GTGGA-GCAGACACTGTGCATTGAGATGTAATT-T-GAAG-AGAGTCATCTCCCTGATTCACCCTTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119222485 67 + 128539186 ATTGTGGA-GCAAACACTGTGCATTGAGATGTAATT-T-GAAG-AGAGTCATCTCCCTGATTCACCGTTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 552256 65 + 6255621 A--GTGGA-GCAGACACTGTGCATTGAGATGTAATT-T-GAAG-AGAGTCATCTCCCTGATTCACCCTTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4599417 65 - 8658521 A--GTGGA-GCAGACACTGTGCATTGAGATGTAATT-T-GAAG-AAAGTCATCTCCCTGATTCACGCTTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114801464 67 + 124281992 A--GTGGAGGCATGCCCTGTGCACTGAGACGTCATG-T-GAAGAAGAATCATCTCCCTAATTTGCCCTTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 445856 63 - 9212255 C------AGGCCTGTGCTGTGCACTGAGACGTCGTG-T-GAAGAAGAATCATCTCCCTAATTCACCCTTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2860826 67 + 4466143 A--GTGGAGGCAGGCGCTGTGCACTGAGACGTCGTG-T-GAAGAAGAATCATCTCCCTAATCCACCCTTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1567440 67 + 5364348 A--GTGGAGGCATGCACTGTGCACTGAGACGTCATG-T-GAAGAACAATCATCTTCCTCATTCACCCTTTT i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33150010 65 - 38964690 --GGTGGAGATGTATACTACACAGGCAGGCCCAATTGT-GAAG---AGTCATCTCCACAActcacttgttt i canFam3.chr26 C 0 I 182 s dasNov3.JH568189 825630 68 - 1116856 A--TTGGAAGCATACCCTTTGCATGGAAACTTCATT-TCGAAGAGGAGTCATCTTCATAACTCATACCCCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9460849 332 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=1075934.000000 s hg38.chr12_KI270834v1_alt 56977 115 + 119498 -CT-CCCCGACTCTTCATTAGTTCTCTGGTATCTGACTTCTTTCACTATTAGGGTCTCCCGTTATCC----AAAATGCCTCTGTTTTTGCCTCTGGTTGCATGATACACATGCATGcttat s panTro5.chr12 127343036 115 + 137163284 -CT-CCCCGACTCTTCATTAGTTCTCTGGTATCTGACTTCTTTCACTATTAGGGTCTCCCGTTATCC----AAAATGCCTCTGTTTTTGCCTCTGGTTGCATGATACACATGCATGcttat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125693847 115 + 135337776 -CT-CCCCGACTCTTCATTAGTTCTCTGGTATCTGACTTCTTTCACTATTAGGGTCTCCCGTTATCC----AAAATGCCTCTGTTTTTGCCTCTGGTTGCATGATACACATGCATGcttat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8207232 115 - 8369578 -CT-CCCCGACTCTTCATTAGTTCTCTGGTATCTGACTTCTTTCACTATTAGGGTCTCCCGTTATCC----AAAATGCCTCTGTTTTTGCCTCTGGTTGCATGATACACATGCATGcttat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97855165 115 + 106955855 -CT-CCCCGACCCTTCATTAGTTCTCTGGTATCTGACTTCTTCCACTATTAGGGTCTCCCATTATCC----AAAATGCCTCTGTTTTCACCTTTGGTTGCATGATACACATGCATGcttat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123980432 113 + 133663169 -CT-CCCCGACCCTTGATTAGTTCTCTGATATCTGACTTCTTCCACTATTAGGGTCTTCCTTTATCC----AAAATGC--CTGTTTTTGCCTCTGGTTGCATGATACACATGCATGcttat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128227823 113 + 137757926 -CT-CCCCGACCCTTGATTAGTTCTCTGATATCTGACTTCTTCCACTATTAGGGTCTTCCTTTATCC----AAAATGC--CTGTTTTTGCCTCTGGTTGCATGATACACATGCATGcttat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10627462 113 - 16319837 -CT-CCCCGACCCTTGATTAGTTCTCTGATATCTGACTTCTTCCACTATTAGGGTCTTCCTTTATCC----AAAATGC--CTGTTTTTGCCTCTGGTTGCATGATACACATGCATGcttat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12250238 113 + 20526591 -CT-CCCCGACCCTTGATTAGTTCTCTGATATCTGACTTCTTCCACTATTAGGGTCTTCCTTTATCC----AAAATGC--CTGTTTTTGCCTCTGGTTGCATGATACACATGCATGcttat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119222552 113 + 128539186 -CT-CCCCGACCCTTGATTAGTTCTCTGATATCTGACTTCTTCCACTATTAGGGTCTTCCTTTATCC----AAAATGC--CTGTTTTTGCCTCTGGTTGCATGATACACATGCATGcttat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 552321 113 + 6255621 -CT-CCCCGACCCTTGATTAGTTCTCTGATATCTGACTTCTTCCACTATTAGGGTCTTCCTTTATCC----AAAATGC--CTGTTTTTGCCTCTGGTTGCATGATACACATGCATGcttat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4599482 113 - 8658521 -CT-CCCTGACCCTTGATTAGTTCTCTGATATCTGACTTCTTCCACTATTAGGGTCTTCCTTTATCC----AAAATGC--CTGTTTTTGCCTCTGGTTGCATGATACACATGCATGcttat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114801531 114 + 124281992 -CT-CCCAGACCCTTCATTAGTTCTCTGGTATCTGACTTCATCCACTATTCAGGTCTTCCATTGTCC-----AAATGCCTCTGTTTTCACCTCCCGTTTTATGATACACATGTGTGcttat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 445919 115 - 9212255 -CTCCCCAGACCTTTCATGAGTTCTCTGGTATCTGACTTCATCCACTATTCAGGTCTTCCACTGTCC-----AGATGCCTCTGTTTTCACCTCCAGTTTTATGATACACATGTGTGCTTAT i saiBol1.JH378194 C 0 I 305 s cebCap1.NW_016107484v1 2860893 115 + 4466143 -CTCCCCAGACCCTTCATTAGTTCTCTGGTATCTGACTTCATCCACTGTTCAGGTCTTCCATTGTCC-----AGATGCCTCTGTTTTCACCTCCAGTTTTACGATACACATGCATGCTTAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1567507 115 + 5364348 -CTCCCCAGACCCTTCATTAGTTCTCTGGTATCTGACTTTATCCACTATTCAGGTCTTCCATTGTCC-----AAATGCCTCTGTTTTCACCTCCAGTTTTATGATACACATGCGTGcttat i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 825698 89 - 1116856 TTC-GCCAGACCACTCTTTAATTCTTTGGTGTCTGATTTCATGCAGTGTTAGGGTCTTCCATTACTCTCACTTGATGCCTCCATTTCTGC------------------------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9460849 332 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=1355117.000000 s hg38.chr12_KI270834v1_alt 57092 144 + 119498 aatattttcaatttacaatggatttattgagacgtagccccatcttaagctgaaaagTGTACCCTAAAATGC---AACTAGTACCtaacagcggctatctttaggtgatgaaattacaaatgatctttattttctttagacgtttct s panTro5.chr12 127343151 144 + 137163284 aatattttcaatttacaatggatttattgagacgtagccccatcttaagctgaaaagTGTACCCTAAAATGC---AACTAGTACCtaacagcggctatctttaggtgatgaaattacaaatgatctttattttctttagacgtttct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125693962 144 + 135337776 aatattttcaatttacaatggatttattgagacgtagccccatcttaagctgaaaagTGTACCCTAAAATGC---AACTAGTACCtaacagcggctatctttaggtgatgaaattacaaatgatctttattttctttagacgtttct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8207347 144 - 8369578 aatattttcaatttacaatggatttattgagacgtagccccatcttaagctgaaaagTGTACCCTAAAATGC---AACTAGTACCtaacagcggctatctttaggtgatgaaattacaaatgatctttattttctttagacgtttct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97855280 144 + 106955855 aatattttcaacttacaatggatttattgagacgtagccccatcttaagctgaaaagTGTACCCTAAAATGC---AACTAGTACCtaacagcagctatctttaggtgatgaaattacaaatgatctttattttctttagacgtttct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123980545 144 + 133663169 aatattttcaacttacaatggatttatcaagacgtaaccccatcttaagctgaaaagTGTACACTAAAATGC---AACTAGTACCtaacagcggctgtctttaggtgatgaaattacagacgatctttattttctttagacatttct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128227936 144 + 137757926 aatattttcaacttacaatggatttatcaagacgtaaccccatcttaagctgaaaagTGtacactaaaatgc---aactagtacctaacagcggctgtctttaggtgatgaaattacagacgatctttattttctttagacatttct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10627575 144 - 16319837 aatattttcaacttacaatggatttatcaagacgtaaccccatcttaagctgaaaagTGTACACTAAAATGC---AACTAGTACCtaacagcggctgtctttaggtgatgaaattacagacgatctttattttctttagacatttct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12250351 144 + 20526591 aatattttcaacttacaatggatttatcaagacataaccccatcttaagctgaAACGTGTACACTAAAATGC---AACTAGTACCTAACAGCGGCTGTCTTTGGGTGATGAAATTACAGACGATCTTTATTTTCTTTAGACATTTCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119222665 144 + 128539186 aatattttcaacttacaatggatttatcaagacgtaaccccatcttaagctgaaaagTGtacactaaaatgc---aactagtacctaacagcggctgtctttaggtgatgaaattacagacgatctttattttctttagacatttct i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 552434 144 + 6255621 aatattttcaacttacaatggatttatcaagacataaccccatcttaagctgaaaagTGtacactaaaatgc---aactagtacctaacagcggctgtctttaggtgatgaaattacagacgatctttattttctttagacatttct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4599595 144 - 8658521 aatattttcaacttacaatgggtttatcgagatgtaatcccatcttaagctgaaaagTGTGCACTAAAATGC---AACTAGTACCCaacagcagctgtctttaggtgatgaaattacagacgatctttattttctttagacatttct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114801645 141 + 124281992 aatatttttaacttacaatgggtttatagagacgtagccccatcatacgctgaaaaatatACACTAAAATGC---AACTAGTACCTAACAGCAGCTACCTTTAGGT---GACATTACAAATGATCTTTATTTTATTTAGATGTTTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 446339 144 - 9212255 aatattttaaacctacaacgggtttatagagacgtagccccatcatacgctgaaaaATGTACACTAAAATGC---AACTAGTACCTAACAGCAGCTCCCTTTAGGTGACGACATTACAAATGATCTTTATTTTCTTTAGATGTTTCT i saiBol1.JH378194 I 305 C 0 s cebCap1.NW_016107484v1 2861008 143 + 4466143 AATATTTTTAACTTACAGCGGGTTTATAGAGACATAGCCCCATCATACGCTG-AAAATGTACACTAAAATGC---AACCAGTACCTAATAGCAGCTACCTTTAGGTGACAACATTACAAATGATCTTTATTTTCTTTAGATGTTTCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1567622 143 + 5364348 aatatttttaacttacaatgggtttatagagacatagccccatcatacgctgaaaaATGTACACTAAAAT-C---AACTAGTACCTAACAGCAGCTACCTTTAGGTGACGACATTACAAATCATCTTTATTTTCTTTAGATGTTTCT i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 825787 46 - 1116856 -----------------------------------------------------------------AGAATACCGGACCCAGTAC------------------------------------TGTTTTATGTACTCTCTGGGGGCATCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9460849 332 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=848086.000000 s hg38.chr12_KI270834v1_alt 57236 104 + 119498 gcattgcttgaattgttgcaatgaggattattccattt--agagagagagagaaaTGAGTGAGTCCATAACAATAGTGATTCTTATTCCATGCAATGGACTGAAGT s panTro5.chr12 127343295 104 + 137163284 gcattgcttgaattgttgcaatgaggattattccattt--agagagagagagaaaTGAGTGAGTCCATAACAATAGCGATTCTTATTCCATGCAATGGATTGAAGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125694106 104 + 135337776 gcattgcttgaattgttgcaatgaggattattccattt--AGAGAGAGAGAGAAATGAGTGAGTCCATAACAATAGCGATTCTTATTCCATGCAATGGATTGAAGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8207491 104 - 8369578 gcattgcttgaattgttgcaatgaggattattccattt--AGAGAGAGAGAGAAATGAGTGAGTCCATAACAATAGTGATTCTTATCCCATGCAACGGACTGAAGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97855424 104 + 106955855 acattacttgaattgttgcaatgaggattattccattt--agagagagagagaaaTGAGTGAGTCCATAACAGTAGTGATTCTTACTCCATGCAACGGACTGAAGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123980689 98 + 133663169 gcattgcttgaattgttgcaatgaggattattccattt--AGAGAGAGAGA------AATGAATCCATAACAATACTGATTCTTACTGTGTGCAATGGACTGAAGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128228080 98 + 137757926 gcattgcttgaattgttgcaatgaggattattccattt--agagagagaga------aaTGAATCCATAACAATACTGATTCTTACTGTGTGCAATGGACTGAAGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10627719 98 - 16319837 gcattgcttgaattgttgcaatgaggattattccattt--AGAGAGAGAGA------AATGAATCCATAACAATACTGATTCTTACTGTGTGCAATGGACTGAAGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12250495 98 + 20526591 GCGTTGCTTGAATTGTTGCAGTGAGGATTATTCCATTT--AGAGAGAGAGA------AATGAATCCATAATAATACGGATTCTTACTGTGTGCAATGGACTGAAGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119222809 98 + 128539186 gcgttgcttgaattgttgcaatgaggattattccattt--agagagagaga------aaTGAATCCATAACAATACTGATTCTTACTGTGTGCAATGGACTGAAGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 552578 98 + 6255621 gcgttgcttgaattgttgcaatgaggattattccattt--agagagagaga------aaTGAATCCATAACAATACGGATTCTTACTGTGTGCAATGGACTGAAGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4599739 100 - 8658521 gcattgcttgaattgttgcaatgaggattattccatttAGAGAGAGAGAGA------AATGAATCCATAACAATAGTGATTCTTACTGTGTGCAATGGACTGAAGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114801786 101 + 124281992 GCATCGCTTGAATTGTTGCAATG-GGATTATGATATTT--AGAGAGAGAGA--AATGAGTGAGTCTGTAACCGTTGTGATGATTACTCTGTGCAGTGGACTGAAGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 446483 102 - 9212255 TCGTTGCTTGAATTGTTGCAAAGAGGATTATTATATTT--AAAGAGAGAGA--AACGAGTGAGTCTGTAATCATCGTGACGATGACTCTGTGCAGTGGACTGAAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2861151 102 + 4466143 GCATTGCTTGAATTGTTGCAAAGAGAATTATTATATTT--AAAGAGAGAGA--GATGAGTGAGTCTATAACCATCGTGATGATTACTCTGTACAGTGGCCTGAAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1567765 102 + 5364348 GCATTGCTTGAATTGTTGCAAAGAGGATTATTATATTT--AAAGAGAGAGA--AATGAGTGAGTCTATAACCATCGTGATGATTACTCTGTGCAGTGGACTGAAGG i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9460849 332 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825833 0 - 1116856 C e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=1471862.000000 s hg38.chr12_KI270834v1_alt 57340 155 + 119498 TTTGTCCGTGCCTGTTCTGGGTGTGTGGTGCAGGACGGGATCTGTATTCAGCCTCAGTTCTT--------CTCAGATGCTCAGCCACCCCTCATGTCTACCTCAGAACCTTTTGATAAGTCCACCTTTAGAGAAGACACTTCTTGCAGAAGGGTCATTTTCAT s panTro5.chr12 127343399 155 + 137163284 TTTGTCCGTGCCTGTTCTGGGTGTGTGGTGCAGGACAGGATCTGTATTCAGCCTCAGTTCTT--------CTCAGATGCTCAGCCACCCCTCATGTCTACCTCAGAACCTTTTGATAAGTCCACCTTTAGAGAAGACACTTCTTGCAGAAGGGTCATTTTCAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125694210 155 + 135337776 TTTGTCCGTGCCTGTTCTGGGTGTGTGGTGCAGGACAGGATCTGTATTCAGCCTCAGTTCTT--------CTCAGATGCTCAGCCACCCCTCATGTCTACCTCAGAACCTTTTGATAAGTCCACCTTTAGAGAAGACACTTCTTGCAGAAGGGTCAttttctt i panPan2.chr12 C 0 I 19 s gorGor5.CYUI01015152v1 8207595 154 - 8369578 TTT-TCCGTGCCTGTTCTGGGTGTGTGGTGCAGGACAGGATCTGTATTCAGCCTCAGTTCTT--------CTCAGATGCTCAGCTACCCCTCATGTCTACCTCAGAACCCTTTGATAAGTCCACCTTTAGAGAAGACACTTCTTGCAGAAGGGTCATTTTCAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97855528 152 + 106955855 TTTGTCCGTGCCTGTTCTGG--GTGTGGCGCAGGACGGGATCTGTATTCAGCCTCAGTTCTT--------CTCAGATGCTCAGCCA-CCCTCATGTCTACCTCAGAACCCTTTGATAAGTCTACCTTTAGAGAAGACACTTCTTGCAGAAGGGCCATTTTCAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123980787 155 + 133663169 TTTGTCTGTGCCTGTTCTGGGTGTGTGGTACAGGACAGGATCTGTATTCAGCCTCAGTTCTT--------CTCAGACACTTGGCCACCCCTCACGTCTACCTCAGACCCCTTTGATAAGTCCACCTTTAGAGAAGATACTTCTTGCGAAAGGGTCATTTTCAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128228178 155 + 137757926 TTTGTCTGTGCCTGTTCTGGGTGTGTGGTACAGGACAGGATCTGTATTTAGCCTCAGTTCTT--------CTCAGACACTTGGCCACCCCTCACGTCTACCTCAGACCCCTTTGATAAGTCCACCTTTAGAGAAGATACTTCTTGCGAAAGGGTCATTTTCAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10627817 155 - 16319837 TTTGTCTGTGCCTGTTCTGGGTGTGTGGTACAGGACAGGATCTGTATTCAGCCTCAGTTCTT--------CTCAGACACTTGGCCACCCCTCACGTCTACCTCAGACCCCTTTGATAAGTCCACCTTTAGAGAAGATACTTCTTGCGAAAGGGTCATTTTCAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12250593 155 + 20526591 TTTGTCTGTGCCTGTTCTGGGTGTGTGGTACAGGACAGGATCTGTATTCAGCCTCAGTTCTT--------CTCAGACACTTGGCCACCCCTCACGTCTACCTCAGACCCCTTTGATAAGTCCACCTTTAGAGAAGATACTTCTTGCGAAAGGGTCATTTTCAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119222907 154 + 128539186 TTTGCCTGTGCCTGTTCTGGGT-TGTGGTACAGGACAGGATCTGTATTCAGCCTCAGTTCTT--------CTCAGACACTTGGTCACCCCTCACGTCTACCTCAGACCCCTTTGATAAGTCCACCTTTAGAGAAGATACTTCTTGCGAAAGGGTCATTTTCAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 552676 155 + 6255621 TTTGTCTGTGCCTGTTCTGGATGTGTGGTACAGGACAGGATCTGTATTCAACCTCAGTTCTT--------CTCAGACACTTGGCCACCCCTCACGTCTACCTCAGACCCCTTTGATAAGTCCACCTTTAGAGAAGATACTTCTTGCGAAAGGGTCATTTTCAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4599839 155 - 8658521 TTTGTCTGTGCCTGTTCTGGGTGTGTGGTATAGGACAGGATCTGTATTCAGCCTCAGTTCTT--------CTCAGACACTTGGCCACCCCTCATGTCTACCTCAGACCCCTTTGATAAGTCCACCTTTAGAGAAGATACTTCTTGAGAAAGCGTCATTTTCAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114801887 162 + 124281992 TTTGTCTGCACCTGCTCTGCGTGTGTGCTGCAGGACAGGGTCCGTGTTCAGCCTCTGTTCTTCTCAGACACTCAGACACTCAGCTACCCGTCATGTCTAGCTCAGACCCCTTTGACAAG-CTACCTTTTGAGAAGATACTTCTTGCTGAAAGGTCATTTTCAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 446585 154 - 9212255 TCTGCCTGCACCTGCTCTGTGTGTGTGCTGCAGGACAGGGTCCGTGTTCAGCCTCTGTTCTT--------CTCACACACTCAGCCAGCCCTCATGTCTAGCTCAGACCACTTAGACAAG-CCACCTTTCGTGAAGATACTTCTTGCTGAAAGGCCATTTTCAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2861253 161 + 4466143 TTTGCCTGCACCTGCTCTGCGTGTGTGCTGCAGGACAGGGTCCGTGTTCAGCCTCCGTTCTTCTCAGACACTCAGACACTCAGCCACCCCTCATGTCTAGCTCAGACCCCTTTGACAAG-CCACCTTTCGAGAAGATACTTCTTGCTGAAAGGTCA-TTTCAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1567867 153 + 5364348 TTTGTCTGCACCTGCTCTGCGTGTGTGCTGCAGGACTGGGTCTGTGTTCAGCCTCTGTTCTT--------CTCAGACACTCAGCCA-CCCTCATGTCTAGCTCAGACCCCTTTAACAAG-CCACCTTTCGAGAAGATACTTCTTGCTGAAAGGTCATTTCCAT i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 825833 127 - 1116856 CGTATCTGTGCATGATCT-----TACCTTGCGGATCAAAGTCTGGGTTCAGCCCCAGCTCTT--------CCCAGACAC--------CTCTTATGCCTACCTCAGACTCTTTGGACCAGTTGACTTTTGGAGGAGATTCTTCTTATAA--------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9460849 332 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=139811.000000 s hg38.chr12_KI270834v1_alt 57495 21 + 119498 GACTCTTCTCCTCCTGGCAAG s panTro5.chr12 127343554 21 + 137163284 GACTCTTCTCCTCCTGGCAAG i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8207749 21 - 8369578 GACTCTTCTCCTCCTAGCAAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97855680 18 + 106955855 GACTCTT---CTCCTAGCAAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123980942 18 + 133663169 GACCCTT---CTCCTAGCAAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128228333 18 + 137757926 GACCCTT---CTCCTAGCAAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10627972 18 - 16319837 GACCCTT---CTCCTAGCAAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12250748 18 + 20526591 GACCCTT---CTCCTAGCAAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119223061 18 + 128539186 GACCCTT---CTCCTAGCAAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 552831 18 + 6255621 GACCCTT---CTCCTAGCAAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4599994 18 - 8658521 GACCCTT---CTCCTAGCAAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114802049 15 + 124281992 GACCCTT---GT---AGCAAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 446739 18 - 9212255 GACCCTT---CTTCCAGCAAG i saiBol1.JH378194 C 0 I 1 s cebCap1.NW_016107484v1 2861414 18 + 4466143 GACCCTT---CTTCTAGCAAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1568020 18 + 5364348 GACCCTT---CTTCTAGCAAG i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 825960 17 - 1116856 -CTtttt---cttttaggagg i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9460849 332 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I e panPan2.chr12 125694365 19 + 135337776 I a score=16105.000000 s hg38.chr12_KI270834v1_alt 57516 27 + 119498 CAAGAGGTGTTCTTTTTCT----TC-----GCCCCC s panTro5.chr12 127343575 27 + 137163284 CAAGAGGTGttcttttttt----tc-----accccc i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8207770 27 - 8369578 CAAGAGGTGTTCTTccccc----cc-----accccc i gorGor5.CYUI01015152v1 C 0 I 9 s nomLeu3.chr10 97855698 32 + 106955855 CAAGAGGTGTTCTTCCCTC----CCCCCCAGCCCCC i nomLeu3.chr10 C 0 I 7 s rheMac8.chr11 123980960 20 + 133663169 CAATAGGTTTTTTCCCCCC----C------------ i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128228351 20 + 137757926 CAATAGGTTTTTTCCCCCC----C------------ i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10627990 20 - 16319837 CAATAGGTTTTTTCCCCCC----C------------ i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12250766 20 + 20526591 CAAGAGGTTTTTCCCCCCC----C------------ i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119223079 20 + 128539186 CAAGAGGTTTTTTCCCCCC----C------------ i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 552849 20 + 6255621 CAAGAGGTTTTTTCCCCTC----C------------ i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600012 24 - 8658521 CAAGAGGTACCCCCCCCGCCCCGC------------ i colAng1.NW_012116043v1 C 0 C 0 s dasNov3.JH568189 825977 5 - 1116856 t------------accc------------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9460849 332 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I e aotNan1.NW_018491581v1 1568038 0 + 5364348 C e cebCap1.NW_016107484v1 2861432 0 + 4466143 C e saiBol1.JH378194 446757 1 - 9212255 I e calJac3.chr9 114802064 0 + 124281992 C e panPan2.chr12 125694365 19 + 135337776 I a score=48405.000000 s hg38.chr12_KI270834v1_alt 57543 8 + 119498 gagatgga s panTro5.chr12 127343602 8 + 137163284 gagatgga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125694384 8 + 135337776 gagacgga i panPan2.chr12 I 19 C 0 s gorGor5.CYUI01015152v1 8207806 8 - 8369578 gagatgga i gorGor5.CYUI01015152v1 I 9 C 0 s nomLeu3.chr10 97855737 8 + 106955855 gagatgga i nomLeu3.chr10 I 7 C 0 s rheMac8.chr11 123980980 8 + 133663169 Aagatgga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128228371 8 + 137757926 Aagatgga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10628010 8 - 16319837 Aagatgga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12250786 8 + 20526591 Aagatgga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119223099 8 + 128539186 Aagatgga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 552869 8 + 6255621 Aagatgga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600036 8 - 8658521 Aagatgga i colAng1.NW_012116043v1 C 0 C 0 s dasNov3.JH568189 825982 8 - 1116856 gggattga i dasNov3.JH568189 C 0 I 65 e micMur3.chr21 9460849 332 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I e aotNan1.NW_018491581v1 1568038 0 + 5364348 C e cebCap1.NW_016107484v1 2861432 0 + 4466143 C e saiBol1.JH378194 446757 1 - 9212255 I e calJac3.chr9 114802064 0 + 124281992 C a score=210166.000000 s hg38.chr12_KI270834v1_alt 57551 39 + 119498 gtttcgctc-tgttgcccaggctggagtgcaatgacgtga s panTro5.chr12 127343610 39 + 137163284 gtttcgctc-tgttgcccaggctggaatgcaatgacgtga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125694392 39 + 135337776 gtctcgctc-tgtcgcccaggctggagtgcagtggcgcga i panPan2.chr12 C 0 I 447 s gorGor5.CYUI01015152v1 8207814 39 - 8369578 gtttcgctc-tgttgcccaggctggaatgcaatgacgtga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97855745 40 + 106955855 gttttgctcttgtcacccaggctggaatgcaacgacgcga i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123980988 39 + 133663169 gtttcgctc-cattgcccaggctggaatgcaatgatgcga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128228379 39 + 137757926 gtttcgctc-cattgcccaggctggaatgcaatgatgcaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10628018 39 - 16319837 gtttcgctc-cattgcccaggctggaatgcaatgatgcga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12250794 39 + 20526591 gtttcgctc-cattgcccaggctggaatgcaatgatgcga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119223107 39 + 128539186 gtttcgctc-cgttgcccaggctggaatgcaatgatgcga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 552877 39 + 6255621 gtttcgctc-cgttgcccaggctggaatgcaatgatgcga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600044 39 - 8658521 gttttgctc-cgttgcccaggctggaatgcaatgatgcga i colAng1.NW_012116043v1 C 0 C 0 e micMur3.chr21 9460849 332 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825990 65 - 1116856 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I e aotNan1.NW_018491581v1 1568038 0 + 5364348 C e cebCap1.NW_016107484v1 2861432 0 + 4466143 C e saiBol1.JH378194 446757 1 - 9212255 I e calJac3.chr9 114802064 0 + 124281992 C a score=464244.000000 s hg38.chr12_KI270834v1_alt 57590 82 + 119498 tctcggctcactgcaacctctgcctccccgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggca s panTro5.chr12 127343649 82 + 137163284 tctcggctcactgcaacctctgcctccccgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125694878 82 + 135337776 tctcggctcactgcaacctctgcctccccgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggca i panPan2.chr12 I 447 C 0 s gorGor5.CYUI01015152v1 8207853 82 - 8369578 tctcggctcactgcaacctctgcctccccgggttcaagcggttctcctgcctcagcctcctgagtagctgggattacaggca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97855785 82 + 106955855 tctcggctcactgcaacctccgcctccccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123981027 82 + 133663169 tctcggctcactgcaatctctgcgtccccggcctcaagcgattctccagcctcagccttccgagttgctggaattacaggca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128228418 82 + 137757926 tctcggctcactgcaatctctgcctccccggcctcaagcgattctccagcctcagccttccgagttgctggaattacaggca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10628057 82 - 16319837 tctcggctcactgcaatctctgcctccccggcctcaagcgattctccagcctcagccttccgagttgctggaattacaggca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12250833 82 + 20526591 tctcggctcactgcaatctctgcctccccggcctcaagcgattctccagcctcagcctcccgagtagctggaattacaggca i cerAty1.NW_012001186v1 C 0 I 315 s chlSab2.chr11 119223146 82 + 128539186 tctcggctcactgcaatctccgcctccccggcctcaagcgattctccggcctcagcctcccgagtagctggaattacaggca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 552916 82 + 6255621 tctcagctcactgcaatctccgcctccccggcttcaagcgattctccagcctcagcctcccgagtagctgggattacaggca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600083 82 - 8658521 tctcggctcactgcaatctccgcctccccggcttcacgcgattctctggcctcagcctcccgagtagctgggattacaggca i colAng1.NW_012116043v1 C 0 C 0 e micMur3.chr21 9460849 332 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825990 65 - 1116856 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I e aotNan1.NW_018491581v1 1568038 0 + 5364348 C e cebCap1.NW_016107484v1 2861432 0 + 4466143 C e saiBol1.JH378194 446757 1 - 9212255 I e calJac3.chr9 114802064 0 + 124281992 C a score=147902.000000 s hg38.chr12_KI270834v1_alt 57672 29 + 119498 tgtgccaccacgcccgg-ctaacttttgta s panTro5.chr12 127343731 29 + 137163284 tgtgccaccacgcccgg-ctaacttttgta i panTro5.chr12 C 0 C 0 s panPan2.chr12 125694960 29 + 135337776 tgtgccaccacgcccgg-ctaacttttgta i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8207935 29 - 8369578 tgtgccaccacgcccgg-ctaacttttgta i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97855867 29 + 106955855 cgtgccaccattctcgg-ctaacttttgta i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123981109 29 + 133663169 cacgccaccacgcccgg-ctaacttttgta i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128228500 29 + 137757926 cacgccaccacgcccgg-ctaacttttgta i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10628139 29 - 16319837 cacgccaccacgcccgg-ctaacttttgta i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12251230 30 + 20526591 tgagccaccgcgcccggcctaacttttgta i cerAty1.NW_012001186v1 I 315 C 0 s chlSab2.chr11 119223228 29 + 128539186 cacgccactacgcctgg-ctaacttttgta i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 552998 29 + 6255621 cccaccaccacgcctgg-ctaacttttgta i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600165 29 - 8658521 cccgccaccacgcccag-ctaacttttgta i colAng1.NW_012116043v1 C 0 C 0 e micMur3.chr21 9460849 332 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 825990 65 - 1116856 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I e aotNan1.NW_018491581v1 1568038 0 + 5364348 C e cebCap1.NW_016107484v1 2861432 0 + 4466143 C e saiBol1.JH378194 446757 1 - 9212255 I e calJac3.chr9 114802064 0 + 124281992 C a score=316497.000000 s hg38.chr12_KI270834v1_alt 57701 57 + 119498 tttttactagagacggggtttcgccatgttggccaggatggtcttgaactcctgacc s panTro5.chr12 127343760 57 + 137163284 tttttactagagacggggtttcgccatgttggccaggatggtcttgaactcctgacc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125694989 57 + 135337776 tttttactagagacggggtttcgccatgttggccaggatggtcttgaactcctgacc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8207964 57 - 8369578 tttttactagagacggggtttcgccatgttggacaggatggtcttgaactcctgacc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97855896 57 + 106955855 tttttagtagagatggggttttgccatgttggccaggatggtctcgaactcctgacc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123981138 57 + 133663169 tttttagtagagacggggtttcaccatgttggccaggctggtctctaactcgtgacc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128228529 57 + 137757926 tttttagtagagacggggtttcaccatgttggccaggctggtctctaactcgtgacc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10628168 57 - 16319837 tttttagtagagacggggtttcaccatgttggccaggctggtctcgaactcgtgacc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12251260 57 + 20526591 tttttagtagagacggggtttcaccatgttggccaggctggtctctaactcgtgacc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119223257 57 + 128539186 tttttagtagagacggggtttcaccatgttggccaggctggtctctaactcgtgacc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 553027 57 + 6255621 tttttagtagagacggggtttcaccatgttggccaggctggtctctaactcgtgacc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600194 57 - 8658521 tttttagtagagacggggtttcaccatgttggccaggctggtctcgaactcgtgacc i colAng1.NW_012116043v1 C 0 C 0 s dasNov3.JH568189 826055 37 - 1116856 TTCTTACT-------GGGTTTTGGCA-------------GTCCTTCTACTCCTAGCA i dasNov3.JH568189 I 65 I 2 e micMur3.chr21 9460849 332 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I e aotNan1.NW_018491581v1 1568038 0 + 5364348 C e cebCap1.NW_016107484v1 2861432 0 + 4466143 C e saiBol1.JH378194 446757 1 - 9212255 I e calJac3.chr9 114802064 0 + 124281992 C a score=9090.000000 s hg38.chr12_KI270834v1_alt 57758 1 + 119498 t s panTro5.chr12 127343817 1 + 137163284 t i panTro5.chr12 C 0 C 0 s panPan2.chr12 125695046 1 + 135337776 t i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8208021 1 - 8369578 t i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97855953 1 + 106955855 t i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123981195 1 + 133663169 t i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128228586 1 + 137757926 t i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10628225 1 - 16319837 t i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12251317 1 + 20526591 t i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119223314 1 + 128539186 t i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 553084 1 + 6255621 t i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600251 1 - 8658521 t i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114802064 1 + 124281992 T i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2861432 1 + 4466143 T i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1568038 1 + 5364348 T i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 826094 1 - 1116856 C i dasNov3.JH568189 I 2 C 0 e micMur3.chr21 9460849 332 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I e saiBol1.JH378194 446757 1 - 9212255 I a score=897283.000000 s hg38.chr12_KI270834v1_alt 57759 76 + 119498 aagAGGTGTTCTTTTGCACAGAC--TTTCTTCTTTGTCTTCAGTGTGTTTTCTGGAATCAGATTTAACTCAGCATCAT s panTro5.chr12 127343818 76 + 137163284 aagAGGTGTTCTTTTGCACAGAC--TTTCTTCTTTGTCTTCAGTGTGTTTTCTGGAATCAGATTTAACTCAGCATCAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125695047 76 + 135337776 aagAGGTGTTCTTTTGCACAGAC--TTTCTTCTTTGTCTTCAGTGTGTTTTCTGGAATCAGATTTAACTCAGCATCAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8208022 76 - 8369578 aagAGGTGTTCTTTTGCACAGAC--TTTCTTCTTTGTCTTCAGTGTGTTTTCTGGAATCAGATTTAACTCCGCATCAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97855954 76 + 106955855 aagAGGTATTCTTTTGCACAGAC--TTTCTTGTTTGTCTTCAGTGTGTTTTCTGGAATCAGATTTAACTCAGCATCAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123981196 76 + 133663169 aagAGGTATTCTTTTGCACAGAC--TTTCTTGTTTGTCTTCAGCCTGTTTTCTGGAATCAGATTTAACTCAGCATCAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128228587 76 + 137757926 aagAGGTATTCTTTTGCACAGAC--TTTCTTGTTTGTCTTCAGCCTGTTTTCTGGAATCAGATTTAACTCAGCATCAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10628226 76 - 16319837 aagAGGTATTCTTTTGCACAGAC--TTTCTTGTTTGTCTTCAGCCTGTTTTCTGGAATCAGATTTAACTCAGCATCAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12251318 76 + 20526591 aagAGGTATTCTTTTGCACAGAC--TTTCTTGTTTGTCTTCAGCCTGTTTTCTGGAATCAGATTTAACTCAGCATCAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119223315 76 + 128539186 aagAGGTATTCTTTTGCACAGAC--TTTCTTGTTTGTCTTCAGCCTGTTTTCTGGAATCAGATTTAACTCAGCATCAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 553085 76 + 6255621 aagAGGTATTCTTTTGCACAGAC--TTTCTTGTTTGTCTTCAGCCTGTTTTCTGGAATCAGATTTAACTCAGCATCAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600252 76 - 8658521 aagAGGTATTCTTTTGCACAGAT--TTTCTTGTTTGTCTTCAGCCTGTTTTCTGGAATCAGATTTAACTCAGCATCAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114802065 76 + 124281992 AAGAGGTGTTCTTTTGCATAGAC--TTTCGTGTTTGTCTTTGGCGTGTTTTCTGGAAACAGTTTTAACTCAGCATCAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 446758 76 - 9212255 AAGAGGTGTTCTTTTGCATAGAC--TTTCTTGTTTGTCTTCAGCGTGTTTTCTGGAATCAGATTTAACTCAGCATCAA i saiBol1.JH378194 I 1 C 0 s cebCap1.NW_016107484v1 2861433 76 + 4466143 AAGAGGTGTTCTTTTGCATAGAC--TTTCTTGTTTGTCTTCAGCGTGTTTTCTGGAATCAGATCGAACTCAGCATCAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1568039 76 + 5364348 AAGAGGTGTTCTGTTGCATAGAC--TTTCTTGTTTGTCTTCAGCGTGTTTTCGGGAATCAGATTGAACTCGGCATCAT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9461181 77 - 31815103 AAGATGTGTTCTTTTGTACAAACTTTTTCCTATTTGTCTTCTATGCATTTTCTGG-ATCAGATTTAACTCAGCATCAT i micMur3.chr21 I 332 I 1463 s dasNov3.JH568189 826095 71 - 1116856 AGGAGGTGTTCTTTTGAACAAGC--TT-----ATCATCTTCTGTATGTTTTCTGGAATAGAATTTAATTCACTTTTGT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=154054.000000 s hg38.chr12_KI270834v1_alt 57835 15 + 119498 TGCCATTACCACAGA s panTro5.chr12 127343894 15 + 137163284 TGCCATTACCACAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125695123 15 + 135337776 TGCCATTACCACAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8208098 15 - 8369578 TGCCATTACCACAGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97856030 15 + 106955855 TGCCATTACCACAGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123981272 15 + 133663169 CGCCATTACCACAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128228663 15 + 137757926 CGCCATTACCACAGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10628302 15 - 16319837 CGCCATTACCACAGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12251394 15 + 20526591 CGCCATTACCACAGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119223391 13 + 128539186 CGCCATTACCAC--A i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 553161 15 + 6255621 CGCCATTACCACAGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600328 15 - 8658521 CGCCATTACCACAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114802141 15 + 124281992 CGCTGTTACCACAGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 446834 15 - 9212255 CGCTATTACCACAGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2861509 15 + 4466143 CGCTATTACCACAGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1568115 15 + 5364348 CGCTATCACCACAGA i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 826166 15 - 1116856 TATCATCATCaaaga i dasNov3.JH568189 C 0 I 219 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=3360648.000000 s hg38.chr12_KI270834v1_alt 57850 340 + 119498 GAgtcttaggcagttcaggctgttataacaaagtgcgatagactggctggctcgtggacagcaggtgttcgtttctcaccattctggaggctgggaattccaagatcagggtgccagcatggtcgggctccagagagggccctctcccgggc-tgcagatggctggcttctcatggcattcttacatggatggatgacagcacgaaaagtcttt-ggggtcccttttataagggcactaatcccattcgtgagggctccaccctcatcacctaatcacctcctaaaagcccaacctccaaataccatcacattgggggttatgatttcaacaaagga--------a-------------tttt s panTro5.chr12 127343909 340 + 137163284 GAgtcttaggcagttcaggctgttgtaacaaagtgcgatagactggctggctcatggacagcaggtgttcgtttctcaccattccggaggctgggaattccaagatcagggtgccagcatggtcgggctccagagagggccctctcccgggc-tgcagatggctggcttctcatggcattcttacatggatggatgacagcacgaaaagtcttt-ggggtcccttttataagggcactaatcccattcgtgagggctccaccctcatcacctaatcacctcttaaaagcccaacctccaaataccatcacattgggggttatgatttcaacaaagga--------a-------------tttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125695138 341 + 135337776 GAgtcttaggcagttcaggctgttgtaacaaagtgcgatagactggctggctcatggacagcaggtgttcgtttctcaccattccggaggctgggaattccaagatcagggtgccagcatggtcgggctccagagagggccctctcccgggc-tgcagatgactggcttctcatggcattcttacatggatggatgacagcacgaaaagtctttgggggtcccttttataagggcactaatcccattcgtgagggctccaccctcatcacctaatcacctcttaaaagcccaacctccaaataccatcacattgggggttatgatttcaacaaagga--------a-------------tttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8208113 340 - 8369578 GAgtcttaggcagttcaggctgttataacaaagtgcgacagaatggctggctcatggacagcaggtgttcgtttctcaccattctggaggctgggaattccaagatcagggtgccagcatggtcgggctccagagagggccctctcccgggc-tgcagatggctggcttctcatggcattcttacatggatggatgacagcacgaaaagtcttt-ggggtcccttttgtaagggcactaatcccattcgtgagggctccaccctcatcacctaatcacctcctaaaagcccaacctccaaataccatcacattgggggttatgatttcaacaaagga--------a-------------tttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97856045 339 + 106955855 GAgtcttaggcagttcaggctgttataacaaagtgcactagaatggctggctcatggacagcaggtgtttgtttctcaccattctggaggctgggaattccaagatcagggtgccagcatggtcgggctccagagagggccctctcctgggt-tgcagatggctggcttctcatggcatccttacatggatggatgacagcaagaaaagtcttt-ggggtcccttttataagggcactaatcccattcgtgagggctccaccctcatcacctaatcacctcctaaaagcccaacctccaaataccatcacattgggggttatgatttcaacaaaaga--------a--------------ttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123981287 348 + 133663169 GAgtcttaggcagttcaggctgttgtaacaaagtgcagtagaatggctggctcatggacagcaggcgttcatttctcaccattctggaggctgggaattccaagatcagggttccagcatggtcgggctccagagagggccctctcctgggt-tgcaaatgtctggcttctcatggcatcctcacatggatgaatgagagcaagaaaagtcttt-gagatcccttttataagggcactaatcccattcgtgagggctccaccctcatcacctaattacctcctaaaagcccagcttccaaataccatcacattgggggttatgatttcaacaaatgattttttttt-------------tttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128228678 348 + 137757926 GAgtcttaggcagttcaggctgttgtaacaaagtgcagtagaatggctggctcatggacagcaggcgttcatttctcaccattctggaggctgggaattccaagatcagggttccagcatggtcgggctccagagagggccctctcctgggt-tgcaaatgtctggcttctcatggcatcctcacatggatgaatgagagcaagaaaagtcttt-gggatcccttttataagggcactaatcccattcgtgagggctccaccctcatcacctaatcacctcctaaaagcccagcttccaaataccatcacattgggggttatgatttcaacaaatgattttttttt-------------tttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10628317 345 - 16319837 GAgtcttaggcagttcaggctgttgtagcaaagtgcagtagaatggctggctcatggacagcaggcgttcatttctcaccattctggaggctgggaattccaagatcagggttccagcatggtcgggctccagagagggccctctcctgggt-tgcaaatgtctggcttctcatggcatcctcacatggatgaatgagagcaagaaaagtcttt-gggatcccttttataagggcactaatcccattcgtgagggctccaccctcatcacctaatcacctcctaaaagcccagcttccaaataccatcacattgggggttatgatttcaacaaatga---tttttt-------------tttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12251409 343 + 20526591 GAgtcttaggcagttcaggctgttgtaacaaagtgcagtagactggctggctcatggacagcaggcgttcatttctcaccattctggaggctgggaattccaagatcagggttccagcatagtcgggctccagagagggccctctcctaggtctgcaaatgtctggcttctcatggcatcctcacatggatgaatgagagcaagaaaagtcttt-gggatcccttttataagggcactaatcccattcgtgagggctccaccctcattacctaatcacctcctaaatgcccagcttccaaataccatcacattgggggttacgatttcaacaaatg------tttt-------------tttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119223404 343 + 128539186 GAgtcttaggcagttcaggctgttgtaacaaagtgcggtagactggctggctcatggacagcaggcgttcatttctcaccattctggaggctgggaattccaagatcagggttccagcatggtcgggctccagagagggccctctcctgggt-tgcaaatggctggcttctcatggcatcctcacgtggatgaatgagagcaagaaaagtcttt-ggggtcccttttataagggcactaatcccattcgtgagggctccaccctcatcacctaatcacctcctaaaagcccagcctccaaataccatcacattgggggttatgatttcaacaaatga-----tttt-------------tttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 553176 346 + 6255621 GAgtcttaggcagttcaggctgttgtaacaaagtgtggtagactggctggctcatggacagcaggcgttcatttctcaccattctggaggctgggaattccaagatcagggttccagcatggtcgggctccagagagggccctgtcctgggt-tgcaaatggctggcttctcatggcatcctcacatggatgaatgacagcaagaaaagtcttt-gggatcccttttaaaagggcactaatcccattcgtgagggctccaccctcatcacctaatcacctcctaaaagcccagcctccaaataccatcacattgggggttatgatttcaacaaatga--atttttt-------------tttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600343 345 - 8658521 GAgtcttaggcagttcaggccgttgtgacaaagtgcgatagactggctggctcatggacagcaggcgttcctttctcaccattctggaggctgggaattccaagatcagggttccagcatggtcgggctccagggagggccctctcctgggt-tgcaaatggctggcttctcatggcatccttacatggatggatgagagcaagaaaagtcttt-ggggtcccttttataagggcactaatcccgttcgtgagggctccaccctcatcacctaatcacctcctaaaagcccagcctccaaatactatcacattgggggtcgtgatttcaacaaatga---tttttt-------------tttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114802156 339 + 124281992 GAgtctcaggctgttcaggctgttataacaaagtgcggtagaccggctggcacgtggacagcagacgtttgtttctcaccgttctggaggctgggaattccaagatcagggtgccagcatggtcgggctccagagagggccctgtcctggat-tgcagatggctggcttctcatggtattgtcacgtggttggataagagcaagaaaagtcctt-ggggtccctcttataagggcactaatcccattcatgagggctccaccctcatcacctaatcgcctcctaaaagcccagcctccaaataccatcacactggggcttatgatttcaacacagga--------a--------------ttt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 446849 353 - 9212255 GAgtcttaggcagttcaggctttcataacaaagcgcgatagactggctggcacgtggacagcagatgtttgtttctcaccattctggaggctgggaattccaagatcagggtgccagcatggtcgggctccagagagggccctgtcctgggt-tgcagatgactggcttctcatggtatcgtcacatggttggataagagcaagaaaagtcttt-ggagtcccttttataagggcactaatcccattcgtgagggctccaccctcatcacctaatcgcctcctaaaagcccagcctccaaataccatcacactggggtttatgatttcaacacagaa--------attttttttttctttttt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2861524 339 + 4466143 GAgtcttaggcagttcaggctgtcataacaaagcgtgatagatgggctggcatgtggacagcggatgcttgtttcttaccgttctggaggctggcaattccaagatcagggtgcca-catggtcgggctccagggagggccctgtcctgcgt-tgcaaatggctggcttctcatggtatcgtcacacagatggataagagcaagaaaagtcttg-ggggtcccttttataagggcactaatcccattcatgagggctccaccctcatcacctaattgccttctaaaagcccagcctccaaataccatcacactggggcttatgatttcaacacggga--------a-------------attt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1568130 340 + 5364348 GAgtcttaggtcgttcaggctgttaccacaaagtgcgagagactggctggcacgtggacagcagatgtttgtttctcaccattctggaggctgggaattcccagatcagggtgccagcatggtcaggctccagagagggccctgtcctgggt-tgcagagggctgccttctcatggtattgtcacatggatggataagagcaagaaaagtcttt-ggggtcccttttataagggcactaatcccattcatgagggctccaccctcatcacctaatcgcctcctaaaagcccagcctccaaataccatcacactggggcttatgatttcaacacagga--------a-------------tttt i aotNan1.NW_018491581v1 C 0 I 8 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 826181 219 - 1116856 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=23019.000000 s hg38.chr12_KI270834v1_alt 58190 10 + 119498 gtgtgtgtgt- s panTro5.chr12 127344249 10 + 137163284 gtgtgtgtgt- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125695479 10 + 135337776 gtgtgtgtgt- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8208453 10 - 8369578 gcgtgtgtgc- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97856384 10 + 106955855 gtgtgtgtgt- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123981635 10 + 133663169 tttttttttt- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128229026 10 + 137757926 tttttttttt- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10628662 10 - 16319837 tttttttttt- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12251752 10 + 20526591 tttttttttt- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119223747 10 + 128539186 tttttttttt- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 553522 10 + 6255621 tttttttttt- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600688 10 - 8658521 ttcttttttt- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114802495 10 + 124281992 -tttttttttg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 447202 10 - 9212255 -tttttttttt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2861863 10 + 4466143 -tttttttttg i cebCap1.NW_016107484v1 C 0 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 826181 219 - 1116856 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I e aotNan1.NW_018491581v1 1568470 8 + 5364348 I a score=343592.000000 s hg38.chr12_KI270834v1_alt 58200 36 + 119498 gtggggagaacaaacattcagtctattgcaCGGAGT s panTro5.chr12 127344259 36 + 137163284 gtggggagaacaaacattcagtctattgcaCGGAGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125695489 36 + 135337776 gtggggagaacaaacattcagtctattgcaCGGAGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8208463 36 - 8369578 ggggggagaacaaacattcagtctattgcaCGGAGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97856394 34 + 106955855 gtgggggga--gaacattcagtccattgcaCGGAGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123981645 36 + 133663169 gtggggagaacaaacattcagtccatTGAACGGAGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128229036 36 + 137757926 gtggggagaacaaacattcagtccatTGAACGGAGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10628672 36 - 16319837 gtggggagaacaaacattcagtccatTGAACGGAGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12251762 36 + 20526591 gtggggagaacaaacattcagtccatTGAACGGAGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119223757 36 + 128539186 gtggggagaacaaacattcagtccatTGAACAAAGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 553532 36 + 6255621 gtggggagaacaaacattcagtccatTGAACGGAGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600698 36 - 8658521 gtggggagaacaaacattcagtccatTGAACGGAGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114802505 36 + 124281992 gtgggtggaacaaacgttcagtccattgcaCGGAGT i calJac3.chr9 C 0 I 154 s saiBol1.JH378194 447212 36 - 9212255 GTGAGTGGAACAAACGTTCAGTCCATTGCACGGAGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2861873 36 + 4466143 gtaggtggaacaaacgttcagtccattgcaTGGAGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1568478 36 + 5364348 gtgggtggaacaaacgttcagtccattgcaTGGAGT i aotNan1.NW_018491581v1 I 8 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 826181 219 - 1116856 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=153690.000000 s hg38.chr12_KI270834v1_alt 58236 17 + 119498 AAGAATCACTATTGTTA s panTro5.chr12 127344295 17 + 137163284 AAGAATCACTATTGTTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125695525 17 + 135337776 AAGAATCACTATTGTTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8208499 17 - 8369578 AAGAATCACTATTGTTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97856428 17 + 106955855 AAGAATCACTATTGTTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123981681 17 + 133663169 AAGAATCACTATTGTGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128229072 17 + 137757926 AAGAATCACTATTGTGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10628708 17 - 16319837 AAGAATCACTATTGTGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12251798 17 + 20526591 AAGAATCACTATTGTGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119223793 17 + 128539186 AAGAATCACTATTGTGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 553568 17 + 6255621 AAGAATCACTATTGTGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600734 17 - 8658521 AAGAATCACTATTGTGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114802695 17 + 124281992 AAGAATCGCTGTTGGTG i calJac3.chr9 I 154 C 0 s saiBol1.JH378194 447248 17 - 9212255 AAGAATCACTATTGGTA i saiBol1.JH378194 C 0 I 310 s cebCap1.NW_016107484v1 2861909 17 + 4466143 AAGAATTGCTATTGATG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1568514 17 + 5364348 AAGAATCGCTATTGGTG i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 826181 219 - 1116856 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=536279.000000 s hg38.chr12_KI270834v1_alt 58253 57 + 119498 TGGACTCACTCAtttctctccctctaaatggaataatcctcactgcaacaattcaaa s panTro5.chr12 127344312 57 + 137163284 TGGACTCACTCATTTCTCTCCCTCTAAATGGAATAATCCTCACTGCAACAATTCAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125695542 57 + 135337776 TGGACTCACTCAtttctctccctctaaatggaataatcctcactgcaacaattcaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8208516 57 - 8369578 TGGACTCACTCGTTTCTCTCCCTCTAAATGGAATAATCCTCACTGCAACAATTCAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97856445 57 + 106955855 TGAACTCACTCGTTTCTCTCCCTCTAAATGGAATAATCCGCACTGCAACAATTCAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123981698 57 + 133663169 TGGACTCACTCAtttctctccctctaaatggaataatactcactgcaacaattcaaa i rheMac8.chr11 C 0 I 350 s macFas5.chr11 128229089 57 + 137757926 TGGACTCACTCAtttctctccctctaaatggaataatactcactgcaacaattcaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10628725 57 - 16319837 TGGACTCACTCAtttctctccctctaaatggaataatactcactgcaacaattcaaa i macNem1.NW_012010578v1 C 0 I 353 s cerAty1.NW_012001186v1 12251815 57 + 20526591 TGGACTCACTCAtttctctccctctaaatggaataatactcactgcaacaattcaaa i cerAty1.NW_012001186v1 C 0 I 350 s chlSab2.chr11 119223810 57 + 128539186 TGGACTCACTCAtttctctccctctaaatggaataatactcactgcaacaattcaaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 553585 57 + 6255621 TGGACTCACTCAtttctctccctctaaatggaataatactcactgccacaattcaaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600751 53 - 8658521 TGGACTCACTCATTTCTCTCCCTCCAAATGGAATAAT----ACTGCAACAATTCAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114802712 54 + 124281992 TGGGCTCACTCATTTCTGT--CTCTAAATGGAATAATCATC-CTGCGACGATTCAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 447575 55 - 9212255 TGGGCTCACTCAtttctgt--ctctaaatggaataatcatcactgcaacaattcaaa i saiBol1.JH378194 I 310 C 0 s cebCap1.NW_016107484v1 2861926 55 + 4466143 TGGGCTCACTCATTTCTGT--CTCTAAATGGAATAATTATCACTGCAACAATTCAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1568531 55 + 5364348 TGGGCTCACTCATTTCTGT--CTCTAAATGGAATAATCATCACTGCAACAATTCAAA i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 826181 219 - 1116856 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=106740.000000 s hg38.chr12_KI270834v1_alt 58310 19 + 119498 tgatgcagaagcgtct-aaa s panTro5.chr12 127344369 19 + 137163284 TGATGCAGAAGCGTCT-AAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125695599 19 + 135337776 tgatgcagaagcgtct-aaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8208573 20 - 8369578 TGATGCAGAAGCGTCTAAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97856502 19 + 106955855 TGATGCAGAAGCGTCT-AAA i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128229146 19 + 137757926 caatagagaaatgtct-aaa i macFas5.chr11 C 0 I 328 s chlSab2.chr11 119223867 19 + 128539186 caatgcagaaatgtct-aaa i chlSab2.chr11 C 0 I 338 s manLeu1.NW_012103587v1 553642 19 + 6255621 caatgcagaaatgtct-aaa i manLeu1.NW_012103587v1 C 0 I 1 s colAng1.NW_012116043v1 4600804 19 - 8658521 CAATGCAGAAATGTCT-AAA i colAng1.NW_012116043v1 C 0 I 1 s calJac3.chr9 114802766 19 + 124281992 CAATGCAGAAACGTCT-ACA i calJac3.chr9 C 0 I 1 s saiBol1.JH378194 447630 19 - 9212255 caatgcagaaacgtct-aaa i saiBol1.JH378194 C 0 I 1 s cebCap1.NW_016107484v1 2861981 19 + 4466143 CAATGCAGAAACGTCT-AAA i cebCap1.NW_016107484v1 C 0 I 1 s aotNan1.NW_018491581v1 1568586 19 + 5364348 CAATGCAGAAACGTCC-AAA i aotNan1.NW_018491581v1 C 0 I 1 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 826181 219 - 1116856 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I e cerAty1.NW_012001186v1 12251872 350 + 20526591 I e macNem1.NW_012010578v1 10628782 353 - 16319837 I e rheMac8.chr11 123981755 350 + 133663169 I a score=341779.000000 s hg38.chr12_KI270834v1_alt 58329 34 + 119498 aaaataaggatcacttgtaatttcatcacctaaa s panTro5.chr12 127344388 34 + 137163284 AAAATAAGGATCACTTGTAATTTCATCACCTAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125695618 34 + 135337776 aaaataaggatcacttgtaatttcatcacctaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8208593 34 - 8369578 AAAATAAGGATCACTTGTAATTTCATCGCCTAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 9100445 34 - 106955855 aaaataaagatcatttgtaatttcatcacctaaa i nomLeu3.chr10 n 0 n 0 s rheMac8.chr11 123982105 34 + 133663169 aaaagaaggaccatttgtaatttcatcacctaaa i rheMac8.chr11 I 350 C 0 s macFas5.chr11 128229493 34 + 137757926 aaaataaggaccatttgtaatttcatcacctaaa i macFas5.chr11 I 328 C 0 s macNem1.NW_012010578v1 10629135 34 - 16319837 aaaataaggaccatttgtaatttcatcacctaaa i macNem1.NW_012010578v1 I 353 C 0 s cerAty1.NW_012001186v1 12252222 34 + 20526591 aaaataaggaccatttgtaatttcatcacctaaa i cerAty1.NW_012001186v1 I 350 C 0 s chlSab2.chr11 119224224 34 + 128539186 aaaataaggaccatttgtaatttcatcacctaaa i chlSab2.chr11 I 338 C 0 s manLeu1.NW_012103587v1 553662 34 + 6255621 aaaataaggaccatttgtaatttcatcacctaaa i manLeu1.NW_012103587v1 I 1 C 0 s colAng1.NW_012116043v1 4600824 34 - 8658521 AAAATAAGGGCCATTTATAATTTCATCACCTAAA i colAng1.NW_012116043v1 I 1 C 0 s calJac3.chr9 114802786 34 + 124281992 AAAATAAGGACCGTTTGTAATTCCATCACCTAAA i calJac3.chr9 I 1 C 0 s saiBol1.JH378194 447650 34 - 9212255 aaaataaggaccatatgtgatttcatcacctaaa i saiBol1.JH378194 I 1 C 0 s cebCap1.NW_016107484v1 2862001 34 + 4466143 AAAATAAGGACCATTCGTAATTTCATCACCTAAA i cebCap1.NW_016107484v1 I 1 C 0 s aotNan1.NW_018491581v1 1568606 34 + 5364348 AAAATAAGGACTCTTTGTAATTTCATCACCTAAA i aotNan1.NW_018491581v1 I 1 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 826181 219 - 1116856 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=424579.000000 s hg38.chr12_KI270834v1_alt 58363 42 + 119498 gattgccactgttaGGTACCAGTAGCCTTTTAGTGTATACTT s panTro5.chr12 127344422 42 + 137163284 GATCGCCACTGTTAGGTACCAGTAGCCTTTTAGTGTATACTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125695652 42 + 135337776 gatcgccactgttaGGTACCAGTAGCCTTTTAGTGTATACTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8208627 42 - 8369578 GATCGCCACTGTTAGGTACCAGTAGCCTTTTAGTGTATActt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97856521 42 + 106955855 GATCGCCACTGTTAGGTACCAGTAGCATTTTAGTGTATACTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123982139 42 + 133663169 gatcgccactgttaggcaccagtagcattttagtgtatACTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128229527 42 + 137757926 gatcgccactgttaggcaccagtagcattttagtgtatactt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10629169 42 - 16319837 gatcgccactgttaggcaccagtagcattttagtgtatactt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12252256 42 + 20526591 gatcgccactgttaggcaccggtagcattttagtgtatACTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119224258 42 + 128539186 gatcgccactgttaggcaccagtagcattttagtgtatactt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 553696 42 + 6255621 gatcgccactgttaggcaccagtagcattttagtgtatactt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600858 42 - 8658521 GATTGCCACTGTTAGGCACCAGTAGCGTTTTAGTGTATACtt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114802820 42 + 124281992 GATTGCCGCTGTTCGGCACCAGCAGCATTTTAGTGCGCACTT i calJac3.chr9 C 0 I 1 s saiBol1.JH378194 447684 42 - 9212255 gattgccactgttaggccccagcagcattttagtgcatactt i saiBol1.JH378194 C 0 I 1 s cebCap1.NW_016107484v1 2862035 42 + 4466143 GATTGCCATTGTTAGGCACCAGCAGCATTTTAGTGCATACTT i cebCap1.NW_016107484v1 C 0 I 304 s aotNan1.NW_018491581v1 1568640 42 + 5364348 GATTGCCACTGTTAGGCACCAGCAGCATTTTAGTGCATACTT i aotNan1.NW_018491581v1 C 0 I 1 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 826181 219 - 1116856 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=60995.000000 s hg38.chr12_KI270834v1_alt 58405 10 + 119498 TTCTTTTTTT s panTro5.chr12 127344464 10 + 137163284 TTCTTTTTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125695694 10 + 135337776 TTCTTTTTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8208669 10 - 8369578 ttcttttttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97856563 10 + 106955855 TTCTTTTTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123982181 10 + 133663169 TTACTTTTTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128229569 10 + 137757926 ttacttttta i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10629211 10 - 16319837 ttacttttta i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12252298 10 + 20526591 TTACTTTTTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119224300 10 + 128539186 ttatttttta i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 553738 10 + 6255621 ttcttttttA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4600900 10 - 8658521 ttcttttttt i colAng1.NW_012116043v1 C 0 I 773 s calJac3.chr9 114802863 10 + 124281992 TTCTTTTATA i calJac3.chr9 I 1 C 0 s saiBol1.JH378194 447727 10 - 9212255 ttcTTTTGTA i saiBol1.JH378194 I 1 C 0 s aotNan1.NW_018491581v1 1568683 10 + 5364348 TTCTTTTATA i aotNan1.NW_018491581v1 I 1 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 826181 219 - 1116856 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I e cebCap1.NW_016107484v1 2862077 304 + 4466143 I a score=382962.000000 s hg38.chr12_KI270834v1_alt 58415 44 + 119498 AAATTATTTTTCTGTTATTTTCATTTTTGGTCTGGGAACCAACG s panTro5.chr12 127344474 44 + 137163284 AAATTATTTTTCTGTTATTTTCATTTTTGGTCTGGGAACCAACG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125695704 44 + 135337776 AAATTATTTTTCTGTTATTTTCATTTTTGGTCTGGGAACCAACG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8208679 44 - 8369578 aaattatttttctgttattttcatttTTGGTCTGGGAACCAATG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97856573 44 + 106955855 AAATTATTTTTCTGTCATTTTAATTTTTGGTCTGGGAACCAACG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123982191 44 + 133663169 AAATTCTTTTTCTGTTATTTTAATTTTTGGTCTGGGAATCAACG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128229579 44 + 137757926 aaattctttttctgtTATTTTAATTTTTGGTCTGGGAATCAACG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10629221 44 - 16319837 aaattctttttctgttattttaattttTGGTCTGGGAATCAACG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12252308 44 + 20526591 AAATTCTTTTTCTGTTATTTTAATTTTTGGTCTGGGAATCAATG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119224310 44 + 128539186 aaattgtttttctgtTATTTTAATTTTTGGTCTGGGAATCAACG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 553748 44 + 6255621 AAATTCTTTTTCTGTTATTTTAATTTTTGGTCTGGGAACCGACG i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114802873 44 + 124281992 AAATTCTTTTTCTGTTATTTTAATTTTTAGTCTGGGAACCAAAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 447737 44 - 9212255 AAATTCTTTTTCTGTTATTTTAATTTTTGGTCTGGGAACCAAAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2862381 44 + 4466143 aaaTTCTTTTTCTGTTATTTTAATTTTTGGTCTGGGGACCAAAG i cebCap1.NW_016107484v1 I 304 C 0 s aotNan1.NW_018491581v1 1568693 44 + 5364348 AAATTCTTTGTCTGTTATTTTAATTTTTGGTCTGGGAACCAAAG i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 826181 219 - 1116856 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I e colAng1.NW_012116043v1 4600910 773 - 8658521 I a score=2201907.000000 s hg38.chr12_KI270834v1_alt 58459 235 + 119498 GAATAATGTACActtttcaacttacaatagggct---gtctcaataaacccatcataagttgaaaatattataagctgaaaatgcacttttgatttatatattcaacttacaatgggttt-atctggatgtgaccccatcgttaagttgaggagTGtgctgaaagtgtagcacttttgcgccatggcaaagtcaaaaagttctaagttgaaccagaggaagtcagggaccatatgTGCA s panTro5.chr12 127344518 235 + 137163284 GAATAATGTACActtttcaacttacaatagggct---gtctcaataaacccatcataagttgaaaatattataagctgaaaatgcacttttgatttatatattcaacttacaatgggttt-atctggatgtgaccccatcgttaagttgaggagTGtgctgaaagtgtagcacttttgcgccatggcaaagtcaaaaagttctaagttgaaccagaggaagtcagggaccatatgTGCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125695748 235 + 135337776 GAATAATGTACActtttcaacttacaatagggct---gtctcaataaacccatcataagttgaaaatattataagctgaaaatgcacttttgatttatatattcaacttacaatgggttt-atctggatgtgaccccatcgttaagttgaggagTGtgctgaaagtgtagcacttttgcgccatggcaaagtcaaaaagttctaagttgaaccagaggaagtcagggaccatatgTGCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8208723 235 - 8369578 GAATAATGTACActtttcaacttacaatagggct---gtctcaataaacccatcataagttgaaaatattataagctgaaaatgcacttttgatttatatattcaacttacaatgggttt-atctggatgtgaccccatcgttaagttgaggagTGtgctgaaagtgtagcacttttgtgccatggcaaagtcaaaaaattctaagttgaaccagaggaagtcagggaccatatgTGCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97856617 234 + 106955855 GAATAATGCACActtttcaacttacaatagggct---gtctcaataaacccatcataagttgaaaatattat-agctgaaaatgcacttttgatttatatattcaacttacaatgggttt-atctggatgtgactccatcgttaagttgaggagTGTGCTGAAAGTGTAGCACTTTTGTGCCATGGCAAAGTCAAAAAATTCTAAGTTGAACCAGAGGAAGTCAGGGACcatatgtgca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123982235 235 + 133663169 GAATAATGTACActtttcaacttacaatagggct---gtctcaataaacgcatcataagttgaaaatattataagctgaaaatgcacttctgatttatatattcagcttacaatgggtttaatctggatgtgactccatcg-taagctgagaagTGtgctgaaagtgtggtacttttgtaccatggcaaagtcaaaaaattctcagttgaaccagaggaagtcagggaccatatgtgca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128229623 235 + 137757926 GAATAATGTACActtttcaacttacaatagggct---gtctcaataaacgcatcataagttgaaaatattataagctgaaaatgcacttctgatttatatattcagcttacaatgggtttaatctggatgtgactccatcg-taaattgagaagTGTGCTGAAAGTGTAGTACTTTTGTACCATGGCAAAGTCAAAAAATTCTCAGTTGAACCAGAGGAAGTCAGGGACcatatgtgca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10629265 235 - 16319837 GAATAATGTACActtttcaacttacaatagggct---gtctcaataaacgcatcataagttgaaaatattataagctgaaaatgcacttctgatttatatattcagcttacaatgggtttaatctgggtgtgactccatcg-taagttgagaagTGtgctgaaagtgtagtacttttgtaccatggcaaagtcaaaaaattctcagttgaaccagaggaagtcagggaccatatgtgca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12252352 235 + 20526591 GAATAATGTACActtttcaacttacaatagggct---gtctcaataaacgcatcataagttgaaaatattataagctgaaaatgcacttctgatttatataatcagcttacaatgggtttaatctggatgtgactccatca-taagttgagaagTGtgctgaaagtatagtacttttgtaccatggcaaagtcaaaaaattctcagttgaaccagaggaagtcagggaccatatgTGCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119224354 234 + 128539186 GAATAATGTACActtttcaac-tacaatagggct---gtctcaataaacgcatcataagttgaaaatattataagctgaaaatgcacttctgatttatatattcagcttacaatgggtttaatctggatgtgactccatca-taagttgagaagTGTGCTGAAAGTGTAGTACTTTCGTACCATGGCAAAGTCAAAAAATTCTCAGTTGAACCAGAGGAAGTCAGGGACcatatgtgca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 553792 235 + 6255621 GAATAATGTACActtttcaacttacaatagggct---gtctctataaacgcatcataagttgaaaatattataagctgaaaatgcacttctgatttatatactcagcttacgatgggtttaatctggatgtgactccattg-taagttgaggagTGtgctgaaagtgtagtacttttgtaccacagcaaagtaaaaaaattctcagttgaaccagaggaagtcaaggaccatatgTGCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4601683 235 - 8658521 gaataaTGTACActtttcaacttacaatagggct---gtctcaataaacccatcataagttgaaaatattataagctgaaaatgcacttctgatttatatattcagcttacagtgggtttaatctggatgtgactccatcg-taaattgaggagTGTGCTGAAAGTGTAGTACTTTTGTACCACAGCAAAGTCAAAAAATTCTCAGTTGAACCAGAGGAAGTCAAGGACcatatgtgca i colAng1.NW_012116043v1 I 773 C 0 s calJac3.chr9 114802917 236 + 124281992 GGATAATATGCActtttcaacttacaatagggctaatgtcccagtaaacccgtcatcagttgaaaatattataagctaaaaatacacttttgatttatatattcaact-acagtgggttt-atctggatgtgaccccattg-taagttgaggaTTGTGCTGAACGCGCAGCACTTTTACATCACGGCAAAGTCAAAAAATTCTAAGTTGAACCACAGGAGATCAGGGACCATATGTGCG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 447781 236 - 9212255 GGGTAATGTGCActtttcaacttacaatagggcc-atgtcccagtaaacccgtcataagttgaaaatattattagttaaaaatatacttttgatttatatattcaactcacagtgggttt-atctggatctgaccccaccg-tgagttgaggattgtgctgaaagcatagcacttttacatcacggcaaagtcaaaaaattctaagctgaaccctaggaagtcagggaccatatgTGCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2862425 236 + 4466143 GGGTAATGTGCCcttttcaacttacagtggggct-atgtcccagtaaacccgtcacaagctgaaaatattattagttaaaaatacacttttgatttatatattcaacttacagtgggttt-atctggatctgaccccaccg-taagttgaggattgtgctgaaagcatggcactttcacatcacggcaaagtcaaaaaattctaagttgaaccataggaaatcagggaccatatgTGCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1568737 228 + 5364348 GGATAATGTGCActtttcaacttacaacagggcc-atgtcccagtaaacccgtcatgagttgaaaataatataagctaaacatacacttGTGATTTATATATTCCACTTACATAAA---------GGATGTGACCCCATCG-TAAGTTGAggattgtactgaaagcgtagcacttttacatcatggcagagtcaaaaaattctaagttgaaccataggaaattggggactgtatgTGCA i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e dasNov3.JH568189 826181 219 - 1116856 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=432642.000000 s hg38.chr12_KI270834v1_alt 58694 45 + 119498 TTCATACACAAACGTATTTCCTTCTTACCAGCAATGGGTTAAAGT s panTro5.chr12 127344753 45 + 137163284 TTCatacacaaacgtatttccttcttaccagcaatgggttaatgt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125695983 45 + 135337776 TTCATACACAAACGTATTTCCTTCTTACCAGCAATGGGTTAATGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8208958 45 - 8369578 TTCATACACAAACGTATTTCCTTCTTACCAGCAATGGGTTAATGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97856851 45 + 106955855 ttcatacacaaacatatttccttcttaccagcaatgggttaatgt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123982470 41 + 133663169 ttcatatacat----atttccttcttaccagccatgggttaatgt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128229858 45 + 137757926 ttcatatacaaacatatttccttcttaccagcaatgggttaatgt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10629500 43 - 16319837 ttcatatacaaac--atttccttcttaccagcaatgggttaatgt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12252587 45 + 20526591 TTCAtatacaaacatatttccttcttaccagcaatgggttaatgt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119224588 45 + 128539186 ttcatatacaaacatatttccttgttaccagcaatgggttaatgt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 554027 45 + 6255621 TTCATATACAAACGTATTTCCTTCTTACCAGCAATGGGTTAATGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4601918 45 - 8658521 ttcatatacaaacatatttccttcttaccagcaatgggttaatgt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803153 45 + 124281992 TTCATATACAAACATATCTTCTTCGCGCCAGCAGCGGGTTAATGT i calJac3.chr9 C 0 I 8 s saiBol1.JH378194 448017 44 - 9212255 -TCATATACAAACATGTCTTCTTCGTGCCAGCGGTGGTTTAATGT i saiBol1.JH378194 C 0 I 8 s cebCap1.NW_016107484v1 2862661 45 + 4466143 TTCATACACAAACATATCTTCTTCGTGCCAGCAGTGGGTTAATGT i cebCap1.NW_016107484v1 C 0 I 8 s aotNan1.NW_018491581v1 1568965 45 + 5364348 TTCATATACAAACATACCTTCTCCGTGCCAGCAGTGGGTCAATGT i aotNan1.NW_018491581v1 C 0 I 25 s dasNov3.JH568189 826400 45 - 1116856 tctatgaatatacatatttatgtcttaccaatagttggttagtat i dasNov3.JH568189 I 219 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=143410.000000 s hg38.chr12_KI270834v1_alt 58739 19 + 119498 TATATGTAAC--TTATGTCAT s panTro5.chr12 127344798 19 + 137163284 catatataac--ttatgtaat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696028 19 + 135337776 CATATATAAC--TTATGTAAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209003 19 - 8369578 TATATATAAC--TTATGTAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97856896 19 + 106955855 tatatataac--ttatgtaat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123982511 19 + 133663169 tatacgtaac--ttatgtaat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128229903 19 + 137757926 tatacgtaac--ttatgtaat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10629543 19 - 16319837 tatacgtaac--ttatgtagt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12252632 19 + 20526591 tatacgtaac--ttatgtaat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119224633 19 + 128539186 tatacataac--ttatgtaat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 554072 19 + 6255621 TATACGTAAC--TTATGTAAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4601963 19 - 8658521 tatacataac--ttatgtaat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803206 19 + 124281992 GGAATATAGG--TTATGTAAT i calJac3.chr9 I 8 C 0 s saiBol1.JH378194 448069 19 - 9212255 GGAATATAAG--TTATGTAAt i saiBol1.JH378194 I 8 C 0 s cebCap1.NW_016107484v1 2862714 19 + 4466143 GGAatataag--ttatgtaac i cebCap1.NW_016107484v1 I 8 C 0 s dasNov3.JH568189 826445 21 - 1116856 tatatgtaaccgttttgtaat i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I e aotNan1.NW_018491581v1 1569010 25 + 5364348 I a score=1105090.000000 s hg38.chr12_KI270834v1_alt 58758 107 + 119498 TTTTC-----CCCACTGTGTCACTg-cgtctttccaagtcaataaatacatatttacattgtctttggaagcgttggacagtattctattgtttggatatgccacacataacc s panTro5.chr12 127344817 106 + 137163284 atttc-----cccactgtgtcactg-cgtctttccaagtcaataaatacatatttacattgtctttggaagtgctggacagtattctattgtttggatatgccacacataa-c i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696047 106 + 135337776 ATTTC-----CCCACTGTGTCACTg-cgtctttccaagtcaataaatacatatttacattgtctttggaagcgctggacagtattctattgtttggatatgccacacataa-c i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209022 107 - 8369578 TTTTC-----CCCACTGTGtcactg-catctttccaagtcaataaatatgtatttacattgtctttggaagcgttggacagtattctattgtttggatatgccacacataacc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97856915 107 + 106955855 ttttc-----tccactgtgtcactg-cctctttccaagtcaataaatatgtatttacattgtctttggaagcgttggacagtattccattgtttggatatgccacacataacc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123982530 107 + 133663169 ttttc-----cccactgtatcactg-cctcttttcaagtcaatgaatatgtatttacattgtctttggaaacattggacagtattccattgtttggatatgccacacataacc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128229922 107 + 137757926 ttttc-----cccactgtatcactg-cctcttttcaagtcaatgaatatgtatttacattgtctttggaaacattggacagtattccattgtttggatatgccacacataacc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10629562 107 - 16319837 ttttc-----cccactgtatcactg-cctcttttcaagtcaatgaatatgtatttacattgtctttggaaacattggacagtattccattgtttggatatgccacacataacc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12252651 107 + 20526591 ttttc-----cccactgtatcactg-cctcttttcaagtcaatgaatatgtatttacattgtctttggaaacattggacagtattccattgtttggatatgccacacataacc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119224652 107 + 128539186 ttttc-----cccactgtatcactg-cctcttttcaagtcaatgaatatgtatttacattgtctttggaaacattggacagtattccattgtttggatatgccacacataacc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 554091 107 + 6255621 TTTTC-----CCcactgtatcactg-cctcttttcaagtcaatgagtatgtatttacattgtctttggaaacattggacagtattccattgtttggatatgccacacataacc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4601982 107 - 8658521 ttttc-----cccactgtatcactg-cctcttttcaagtcaatgaatatgtatttacactgtctttggaaacaatggacagtattccattgtttggatatgccacacataacc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803225 107 + 124281992 TTTTC-----CCTGCTGTCTCACTg-catcttttcaagtcaataaatatgtgtttacattgtctttggacagactggacagtatcccagtgtttggatatgccacacatcacc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448088 107 - 9212255 ttttc-----cctactgtatcactg-catcttttcaagtcaataaatatgtgtttaccttgtctttggaaagattggacagtgtcccagtgtttggatatgtcacacataacc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2862733 107 + 4466143 ttttc-----cctactgtatcactg-catcttttcatgtcaataaatatgtgtttacattgtctttggaaagattggacagtgtcccagtgtctggatatgccacacgtaacc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1569035 107 + 5364348 CTTTC-----CCTGCTGTATCACTg-catcttttcaagtcaataaatatgtgtttacactgtctttggaaagattggacagtatcccagtgtttggatatgccacacataacc i aotNan1.NW_018491581v1 I 25 I 362 s dasNov3.JH568189 826466 112 - 1116856 ttttcaacttaacactgtatcattgacatcttttcaagtcaataaatacacatttagagcatcctttaaaagactgcacagtactctattgtat-gatataccaaacagtacc i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I a score=62088.000000 s hg38.chr12_KI270834v1_alt 58865 9 + 119498 --catttccaa s panTro5.chr12 127344923 9 + 137163284 --catttccaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696153 9 + 135337776 --catttccaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209129 9 - 8369578 --catttccaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857022 9 + 106955855 --catttccaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123982637 9 + 133663169 --catttccaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128230029 9 + 137757926 --catttccaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10629669 9 - 16319837 --catttccaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12252758 9 + 20526591 --catttccaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119224759 9 + 128539186 --catttccaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 554198 9 + 6255621 --catttccaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4602089 9 - 8658521 --catttccaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803332 9 + 124281992 --catctctgc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448195 9 - 9212255 --catctctgc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2862840 9 + 4466143 --catctctgc i cebCap1.NW_016107484v1 C 0 C 0 s dasNov3.JH568189 826578 9 - 1116856 tgtctctct-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e otoGar3.GL873618 4292331 15 + 7922563 I e aotNan1.NW_018491581v1 1569142 362 + 5364348 I a score=329763.000000 s hg38.chr12_KI270834v1_alt 58874 40 + 119498 ----tggcgggcatttagctttgtccttgttttcttattactaa s panTro5.chr12 127344932 40 + 137163284 ----tggcgggcatttagctttgtccttgttttcttattactaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696162 40 + 135337776 ----tggcgggcatttagctttgtccttgttttcttattactaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209138 40 - 8369578 ----tggcgggcatttagctttgtccttgttttcttattactaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857031 40 + 106955855 ----tggcgggcatttagctttgcccttgttttcttattacaaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123982646 39 + 133663169 ----tggcgggca-ttaggtttgtccttgttttcttattacaaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128230038 39 + 137757926 ----tggcgggca-ttaggtttgtccttgttttcttattacaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10629678 39 - 16319837 ----tggcgggca-ttaggtttgtccttgttttcttattacaaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12252767 40 + 20526591 ----tggcgggcatttagctttgtccttgttttcttattacaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119224768 40 + 128539186 ----tggcgggcatttagctttgtccttgttttcttattacaaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 554207 40 + 6255621 ----tggcgggcatttagctttgtccttgttttcttattacaaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4602098 40 - 8658521 ----tggtgggcatttagctttgtccttgttttcttattacaaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803341 36 + 124281992 ----tggcgagcatttaactttttccttgtttttaaatta---- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448204 36 - 9212255 ----tggcgagcatttagctttttccttgtttttaaatta---- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2862849 36 + 4466143 ----tggcgagcagttagctttttccttgtttttaaatta---- i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4292346 40 + 7922563 ----tgttggacatttagcttttcccttgttttatttgtataga i otoGar3.GL873618 I 15 C 0 s dasNov3.JH568189 826587 41 - 1116856 ttgtggactgtcagtcagccttttccttgtttt---attataaa i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e aotNan1.NW_018491581v1 1569142 362 + 5364348 I a score=495936.000000 s hg38.chr12_KI270834v1_alt 58914 44 + 119498 cagtgcagtgatgaacacctttgtttatgtatctttgaatattg s panTro5.chr12 127344972 44 + 137163284 cagtgcagtgatgaacacctttgtttatatatctttgaatattg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696202 44 + 135337776 cagtgcagtgatgaacacctttgtttatatatctttgaatattg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209178 44 - 8369578 cagtgcagtgatgagcacctttgtttatgtatctttgaatattg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857071 44 + 106955855 cagtgcagtgatgaacacctttgtttatgtatctttgaatatag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123982685 44 + 133663169 cagtgcagtgattaacacctttgtttgtatatctttgaatatag i rheMac8.chr11 C 0 I 7 s macFas5.chr11 128230077 44 + 137757926 cagtgcagtgattaacacctttgtttgtatatctttgaatatag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10629717 44 - 16319837 cagtgcagtgattaacacctttgtttgtatatctttgaatatag i macNem1.NW_012010578v1 C 0 I 7 s cerAty1.NW_012001186v1 12252807 44 + 20526591 cagtgcagtgattaacacctttgtttgtgtatctttgaatataa i cerAty1.NW_012001186v1 C 0 I 7 s chlSab2.chr11 119224808 44 + 128539186 cagtacagtgattaacacctttgtttgtatatctttgaatatag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 554247 44 + 6255621 cagtgcagtgattaacacctttgtttgtatatctttgaatatag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4602138 44 - 8658521 cagtgcagtgattaacacctttgtttgtgtatctttgaatatag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803377 44 + 124281992 cagtgtagcgatgaacacctttgcttatatatctttgaatatta i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448240 44 - 9212255 cagtgtagtgatgaacagctttgcttatatatctttgaatatta i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2862885 44 + 4466143 cagtgtagtgatgaacacctttgcttatatatctttgagtatta i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1569504 44 + 5364348 cagtgtagtgatgaacacctttgcttatatatctttgaatatta i aotNan1.NW_018491581v1 I 362 C 0 s otoGar3.GL873618 4292386 44 + 7922563 cagtgcagtgataaacatctgccatcagatatctttaaatatta i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 826628 44 - 1116856 cagtgctgtgataaacatgttcattcctgtatctttgtacattg i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I a score=21182.000000 s hg38.chr12_KI270834v1_alt 58958 17 + 119498 ttcatttttttttccct s panTro5.chr12 127345016 17 + 137163284 ttcatttttttttcccc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696246 17 + 135337776 ttcatttttttttcccc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209222 17 - 8369578 ttcatttttttttcccc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857115 17 + 106955855 ttcagttttttttcccc i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128230121 7 + 137757926 ----------gatcttc i macFas5.chr11 C 0 C 0 s chlSab2.chr11 119224852 7 + 128539186 ----------gatcctc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 554291 7 + 6255621 ----------gatcctc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4602182 7 - 8658521 ----------gatcctc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803421 16 + 124281992 ttcagc-ttttttcccc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448284 17 - 9212255 ttcagcttttttttccc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2862929 15 + 4466143 ttcagc--ttttttccc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1569548 16 + 5364348 ttcagc-ttttttcccc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4292430 12 + 7922563 ttcagtttttgc----- i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 826672 16 - 1116856 ttcgtttttttcccct- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I e cerAty1.NW_012001186v1 12252851 7 + 20526591 I e macNem1.NW_012010578v1 10629761 7 - 16319837 I e rheMac8.chr11 123982729 7 + 133663169 I a score=1846869.000000 s hg38.chr12_KI270834v1_alt 58975 177 + 119498 ataggatcactttctttagagattggta----agttggcaggttaaagggtatatgctcttttacagctttggttgcctggcaccagatttcgcactgggaaggttgGATCTAAACTCATA-TGGAGTTTGCCTCTTT------GGA------GTGGAAAGGACCTGGGGATGCAGGACAGAAGGAAAGGAAAA s panTro5.chr12 127345033 177 + 137163284 ataggatcactttctttagagattggta----agttggcaggttaaagggtatatgctcttttacggctttggttgcctggcaccagatttcgcactgggaaggttggaccTAAACTCATA-TGGAGTTTGCCTCTTT------GGA------GTGGAAAGGACCTGGGGATGCAGGACAGAAGGAAAGGAAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696263 177 + 135337776 ataggatcactttctttagagattggta----agttggcaggttaaagggtatatgctcttttacggctttggttgcctggcaccagatttcgcactgggaaggttggaccTAAACTCATA-TGGAGTTTGCCTCTTT------GGA------GTGGAAAGGACCTGGGGATGCAGGACAGAAGGAAAGGAAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209239 176 - 8369578 ataggatcactttctttagagattggta----agttggcaggttaaagggtatatgctctttta-ggctttggttgcctggcaccagatttcgcactgggaaggttggaccTAAACTCATA-TGGAGTTTGCCTCTTT------GGA------GTGGAAAGGACCTGGGGATGCAGGACAGAAGGAAAGGAAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857132 177 + 106955855 ataggatcactttctttagaaattggta----aattggcaggttaaagggtatatgctcttttaaggcttttgttgcatggcaccagattttgcactgggaaggttggaccTAAACTCATA-TGGAGTTTGCCTCTTT------GGA------GTGGAAAGGACCTAGGGATGCAGGACAGAAGGAAAGGAAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123982736 160 + 133663169 ataggatcactttctttagaaactggta----tattggcaggttaaagggtatatgttcttttaaggcttttg-----------------ttgcaCTGGAAAGGTTGGACCTAAACTCATG-TGGAGCTTGCCTCCTT------GGA------GTGGAAAGGACCTGGGGATGCAGGACAGAAGGAAAGGAAAA i rheMac8.chr11 I 7 C 0 s macFas5.chr11 128230128 160 + 137757926 ataggatcactttctttagaaactggta----tattggcaggttaaagggtatatgttcttttaaggctttcg-----------------ttgcaCTGGAAAGGTTGGACCTAAACTCATG-TGGAGCTTGCCTCCTT------GGA------GTGGAAAGGACCTGGGGATGCAGGACAGAAGGAAAGGAAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10629768 160 - 16319837 ataggatcactttctttagaaactggta----tattggcaggttaaagggtatatgttcttttaaggcttttg-----------------ttGCACTGGAAAGGTTGGACCTAAACTCATG-TGGAGCTTGCCTCCTT------GGA------GTGGAAAGGACCTGGGGATGCAGGACAGAAGGAAAGGAAAA i macNem1.NW_012010578v1 I 7 C 0 s cerAty1.NW_012001186v1 12252858 175 + 20526591 ataggatcactttctttagaaactgata----tattggcaggttaaaaggtatatgttcttttaaggcttttgttgtgtggcacca--ttttgcactggaaaggttggaccTAAACTCATG-TGGAGCTTGCCTCCTT------GGA------GTGGAAAGGACCTGGGGATGCAGGACAGAAGGAAAGGAAAA i cerAty1.NW_012001186v1 I 7 C 0 s chlSab2.chr11 119224859 177 + 128539186 ataggatcactttctttagaaactggta----tattggcaggttaaagggtatatgttcttttaaggcttttgttgcatggcaccaggttttgcactagaaaggttggaccTAAACTCACG-TGGAGTTTGCCTCCTT------GGA------GTGGAAAGGACCtggggatgcaggacagaaggaaaggaaaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 554298 177 + 6255621 ataggatcactttctttagaaactggta----tattggcaggttaaagggtatatgttcttttaaggcttttgttgcgtggcaccagattttgcactggaaaggttggaccTAAACTCATG-TGGAGCTTGCCTCCTT------GGA------GTGGAAAGGACCTGGGGATGCAGGACAGAAGGAAAGGAAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4602189 177 - 8658521 ataggatcactttctttagaaactggta----tattggcaggttaaagggtgtatgttcttttaaggcttttgttgcatggcaccagattttgcactggaaaggttggaccTAAACTCATG-TGGAGCTTGCCTCCTT------GAA------GTGGAAAGGACCTGGGGATGCAGGACAGAAGGAAAGGAAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803437 177 + 124281992 ataggatcactttctttagaaattggta----agttggcgggttaaagggtatatgctttttcaaggcttttgttgtgtggcgccagattttgtattggaaaggttggaccgaAAACCACG-TGGAGTTTGGCTTCTT------GGA------GTGGAAAGGACCCCAGGATGCAGGACACAAGGAGAGGCAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448301 177 - 9212255 ataggatcactttctttagaaactggta----aattggcgggttaaagggtatatgctttgtcaaggcttttgttgtgtggcgccagattttgtattggagaggttggaccTAAACCCGTG-TGGAGTTTGGCTTCTT------GGA------GTGGAAAGGACCCTGGGATGCAGGACAGAAGGAGAGGCAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2862944 176 + 4466143 ataggatcactttctttagaaattggta----aattggcgggttaaagggtatatgctttttcaaggcttctgttgtatggcgccagattttgtattggaaaggttggaccTAAGCCCATG-TGGAGTTTGGCTTCAT------GGA------GTGAAAAGAACCCCAGGATGCAGGACAT-AGGAGAGGTAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1569564 174 + 5364348 ataggatcactttctttagaagttggta----aattggcgggttaaagggtatatgctttttcaaggcttttgttgtatggcgccagattttgtattggaaaggttggaccTAAACCCATG-TGGAGTTTGGCTCCTT------GGA------GTGGAAAGGACCCCGGGATGCAGGAC---AGGAGAGGCAAA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4292442 185 + 7922563 atagggtcactctctttagaaattgatcaattaattgatgggttaaagagtataggctttttaaagacttttgatatgtggcaccagatttctcattggaaaggctAGGCCTAAACTCA---TGGAGTTTGCTTCCTTGCAGGGGGA------GTAAAAAAGACCTAGGAATGCAGGAGAAGGGGAGAGACAAA i otoGar3.GL873618 C 0 I 436 s dasNov3.JH568189 826688 181 - 1116856 atagaatcattttctttggaaataagga----aattggtatgtccta--gtcttttgttttcaaagactttcgatatatagcactaaaggttgcagtagaaaggctgtaGCTAAACTCATGCTGGTACTTGCGTCCTT------GAAAgggagggagaaagggcttggaaata-aggacaagggggaatgataa i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I a score=33215.000000 s hg38.chr12_KI270834v1_alt 59152 3 + 119498 AAG s panTro5.chr12 127345210 3 + 137163284 AAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696440 3 + 135337776 AAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209415 3 - 8369578 AAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857309 3 + 106955855 AAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123982896 3 + 133663169 AAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128230288 3 + 137757926 AAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10629928 3 - 16319837 AAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12253033 3 + 20526591 AAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119225036 3 + 128539186 aag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 554475 3 + 6255621 AAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4602366 3 - 8658521 AAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803614 3 + 124281992 AAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448478 3 - 9212255 GAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2863120 2 + 4466143 -AG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1569738 3 + 5364348 AAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4293063 3 + 7922563 AAA i otoGar3.GL873618 I 436 C 0 s dasNov3.JH568189 826869 3 - 1116856 aag i dasNov3.JH568189 C 0 I 136 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I a score=263195.000000 s hg38.chr12_KI270834v1_alt 59155 22 + 119498 TGTCCTTATTAACAACCAATCA s panTro5.chr12 127345213 22 + 137163284 TGTCCTTATTAACAACCAATCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696443 22 + 135337776 TGTCCTTATTAACAACCAATCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209418 22 - 8369578 TGTCCTTATTAACAACCAATCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857312 22 + 106955855 TGTCCTTATTAACAACCAATCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123982899 22 + 133663169 TGTCTTTGTTAACAACCAATCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128230291 22 + 137757926 TGTCTTTGTTAACAACCAATCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10629931 22 - 16319837 TGTCTTTATTAACAACCAATCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12253036 22 + 20526591 TGTCTTTATTAACAACCAATCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119225039 22 + 128539186 tgactttattaacaaccaatca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 554478 22 + 6255621 TATCTTTATTAACAACCAATCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4602369 22 - 8658521 TGTCTTTATTAACAACCAATCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803617 22 + 124281992 TGTCCTTATTAACAACCAAGCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448481 22 - 9212255 TGTCCTTGTTAACAACCAAGCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2863122 22 + 4466143 TGTCCTTATTAACAACCAAGCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1569741 22 + 5364348 TGTCCTTATTAACAACCAAGCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4293066 22 + 7922563 TGTCTTAATTAACAACCGATCA i otoGar3.GL873618 C 0 I 2 s dasNov3.JH568189 827008 22 - 1116856 TGCCTCAattgacaactgatca i dasNov3.JH568189 I 136 C 0 e micMur3.chr21 9461258 1463 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6709323 2906 - 9870158 I e canFam3.chr26 33150075 182 - 38964690 I a score=33022.000000 s hg38.chr12_KI270834v1_alt 59177 2 + 119498 CC s panTro5.chr12 127345235 2 + 137163284 CC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696465 2 + 135337776 CC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209440 2 - 8369578 CC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857334 2 + 106955855 CC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123982921 2 + 133663169 CC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128230313 2 + 137757926 CC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10629953 2 - 16319837 CC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12253058 2 + 20526591 CC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119225061 2 + 128539186 cc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 554500 2 + 6255621 TC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4602391 2 - 8658521 Cc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803639 2 + 124281992 CC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448503 2 - 9212255 Cc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2863144 2 + 4466143 CC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1569763 2 + 5364348 CC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9462721 2 - 31815103 CC i micMur3.chr21 I 1463 C 0 s proCoq1.NW_012154285v1 6712229 2 - 9870158 CC i proCoq1.NW_012154285v1 I 2906 C 0 s otoGar3.GL873618 4293090 2 + 7922563 CT i otoGar3.GL873618 I 2 C 0 s dasNov3.JH568189 827030 2 - 1116856 cc i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124804825 909 + 151834684 I e canFam3.chr26 33150075 182 - 38964690 I a score=1075926.000000 s hg38.chr12_KI270834v1_alt 59179 77 + 119498 -CCACCACAAAGGATTATGCTAATTTATGCAACTGGCagtgtctgttttc-acatattcttgccaat------actagatattgt s panTro5.chr12 127345237 77 + 137163284 -CCACCAcaaaggattatgctaatttatgcaactggcagtgtctgttttc-acatattcttgccaat------actagatattgt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696467 77 + 135337776 -CCACCAcaaaggattatgctaatttatgcaactggcagtgtctgttttc-acatattcttgccaat------actagatattgt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209442 77 - 8369578 -CCACCAcaaaggattatgctaatttatgcaactggcagtgtccgttttc-acatattcttgccaat------actagatattgt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857336 77 + 106955855 -CCACCAcaaaggattatgctaatttatgcaactggcagtgtccgttttc-acatattcttgccaat------actagatattgt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123982923 77 + 133663169 -CCACCGcaaaggattatgctaatttatgcaactggcaatgtctattttc-acatattcttgccaat------actggatattgt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128230315 77 + 137757926 -CCACCGcaaaggattatgctaatttatgcaactggcaatgtctattttc-acatattcttgccaat------actggatattgt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10629955 77 - 16319837 -CCACCGcaaaggattatgctaatttatgcaactggcaatgtctcttttc-acatattcttgccaat------actggatattgt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12253060 45 + 20526591 -CCACCGCAAAGGATTATGCTAATTTATGCAACTGGCAATGTCta---------------------------------------t i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119225063 77 + 128539186 -ccaccgcaaaggattatgctaatttatgcaactggcaatgtctattttc-acatattcttgccaat------actggatattgt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 554502 77 + 6255621 -CCACTGCAAAGGATTATGCTAATTTATGCAACTGGCAATGTCTATTTTC-ACATATTCTTGCCAAT------ACTGGATATTGT i manLeu1.NW_012103587v1 C 0 I 381 s colAng1.NW_012116043v1 4602393 77 - 8658521 -ccaccacaaaggattatgctaatttatgcaactggtaatgtctattttc-acatattcttgccaat------actggatattgt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803641 77 + 124281992 -TCACCACAaagggttatgctaatttatgcaactggcagtgtccgttttc-acatacccttgccaat------actggatagtgt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448505 77 - 9212255 -ccaccacaaaggattgtgctaatttatgcaactggcaatgtctgttttc-atatacccttgccaat------actagatagtgt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2863146 77 + 4466143 -CCACCACAAAGGATCACGCTAATTTATGCAGCTGGCaatgtccgttttc-acatacccttgccagt------actggatagtgt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1569765 77 + 5364348 -CCACCAcaaaggattatgctaatgtatgcaactggcaatgtccgttttc-acatacccttgccaat------actggatagtgt i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9462723 78 - 31815103 -CCACAAcaaaggattatgctaatttatgctatccgcaatgtctattttctgcatattcttaccgat------actaggtattgt i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6712231 78 - 9870158 -CCACAACAAAGAATAATGCAACTTTATGCTATTGGCaatgtctgttttctgcatgctcttaccaat------actaggtattgt i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4293092 78 + 7922563 -CCACAACAAAGgattatgctaatttgtgctactggcaatgtctgttttctgcatgctctcagcaat------gctgggtatttt i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33150257 77 - 38964690 -CCACAACAaaggattatactgatttatgctactggtaatgtccatttct-ccctgttcttgccaac------actggctattat i canFam3.chr26 I 182 C 0 s dasNov3.JH568189 827032 85 - 1116856 ttcacaacaaaggattacactaatttacactaacaccaatgcccattttccttattctcttgataatgttgacactgagcattat i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124804825 909 + 151834684 I a score=438770.000000 s hg38.chr12_KI270834v1_alt 59256 31 + 119498 catgctgatatttgtcaagattataggtgga s panTro5.chr12 127345314 31 + 137163284 catgctgatatttgtcaagattataggtgga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696544 31 + 135337776 catgctgatatttgtcaagattataggtgga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209519 31 - 8369578 cattctgatatttgtcaagattataggtgga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857413 31 + 106955855 cattctgatatttgtcaagattataggtaga i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123983000 31 + 133663169 cattctgatatttggtaagattataggtgga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128230392 31 + 137757926 cattctgatatttggtaagattataggtgga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10630032 31 - 16319837 cattctgatatttggtaagattataggtgga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12253105 31 + 20526591 cattctgatatttgttaagattataggtgga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119225140 31 + 128539186 cattctgatatttgttaagattataggtgga i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4602470 31 - 8658521 cattctggtatttgtcaagattataggtgga i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803718 31 + 124281992 cattctgatatttgccaagattataggtgga i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448582 31 - 9212255 cattctgatatttgccaagattataggcgaa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2863223 31 + 4466143 cattctgatatttgccaagattataggtgga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1569842 31 + 5364348 cattctgatatttgccaagattataggtgga i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9462801 31 - 31815103 cattctgatatttgctaatattatagatgga i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6712309 31 - 9870158 cattctgatatttgccagtattatagatgga i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4293170 31 + 7922563 cattctgatatttgccaatattagagatgga i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33150334 31 - 38964690 caatctgatatttgccaatattgtaggcgaa i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 827117 30 - 1116856 cattctgaca-ttgccaatatggtaggcaaa i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124804825 909 + 151834684 I e manLeu1.NW_012103587v1 554579 381 + 6255621 I a score=3236870.000000 s hg38.chr12_KI270834v1_alt 59287 223 + 119498 aaatattgcag--tttaaatgatc----ctttctccaattaatagtaaagtttgaatatccttttatacattttttggacatttaccttttc-tcttttgtgtattgcccctttatatacttATTGAGTTGTGAGAACTCTTTATATAGGAGAGCAATCACAGTTCATTCAATGAATCCAGCTTCCAAAATTTCACAA---ATATTGGCCTTTTGTTTGAGGTATTTGTAAAA s panTro5.chr12 127345345 223 + 137163284 aaatattgcag--tttaaatgatc----ctttctccaattaatagtaaagtttgaatatccttttatacattttttggacatttaccttttc-tcttttgtgtattgcccctttatatacttATTGAGTTGTGAGAACTCTTTATATAGGAGAGCAATCACAGTTCATTCAATGAATCCAGCTTCCAAAATTTCACAA---ATATTGGCCTTTTGTTTGAGGTATTTGTAAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696575 223 + 135337776 aaatattgcag--tttaaatgatc----ctttctccaattaatagtaaagtttgaatatccttttatacattttttggacatttaccttttc-tcttttgtgtattgcccctttctatacttattgagttgtgagaactctttatataggagagcaatcaCAGTTCATTCAATGAATCCAGCTTCCAAAATTTCACAA---ATATTGGCCTTTTGTTTGAGGTATTTGTAAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209550 223 - 8369578 aaatattgcag--tttaaattatc----ctttctccaattaatagtaaagtttgaatatccttttatacattttttggacatttaccttttc-tcttttgtgtattgcccctttatatacttATTGAGTTGTGAGAACTCTTTATATAGGAGAGCAATCACAGTTCATTCAATGAATCCAGCTTCCAAAATTTCACAA---ATATTGGCCTTTTGTTTGAGGTATTTGTAAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857444 223 + 106955855 aaatattgcag--tttaaatgatc----ctttctccaattaatagtaaagtttgaatatccttttatacattttttggacatttaccttttc-tcttttgtgtgttgcccctttatatACTTATTGGGTTGTGAGAACTCTTTATATAGGAGAGCAATCACAGTTCATTCAATGAATCCAGCTTCCAAAATTTCACAA---ATATTGGCCTTTTGTTTGAGGTATTTGTAAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123983031 223 + 133663169 aaatattgcag--tttaaatgacc----ctttctccaattaatagtgaagtttgaatatccttttatacaatcattggacatttaccttttc-tcttttgtgagttgcctctttatatacttattgatttgtgagaactctttatataGGAGAGCAATCACAGCTCATTCAATGAATCCAGCTTCCAATATTTCACAA---ATATTGGCCTTTTGTTTGAGGTATTTGTAAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128230423 223 + 137757926 aaatattgcag--tttaaatgacc----ctttctccaattaatagtgaagtttgaatatccttttatacaatcattggacatttaccttttc-tcttttgtgagttgcctctttatatacttattgatttgtgagaactctttatataGGAGAGCAATCACAGCTCATTCAATGAATCCAGCTTCCAATATTTCACAA---ATATTGGCCTTTTGTTTGAGGTATTTGTAAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10630063 223 - 16319837 aaatattgcag--tttaaatgacc----ctttctccaattaatagtgaagtttgaatatccttttatacaatcattggacatttaccttttc-tcttttgtgagttgcctctttatatacttattgatttgtgagaactctttatataGGAGAGCAATCACAGCTCATTCAGTGAATCCAGCTTCCAATATTTCACAA---ATATTGGCCTTTTGTTTGAGGTATTTGTAAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12253136 223 + 20526591 aaatattgcag--tttaaatgacc----ctttctccaattaatagtgaagtttgaatatccttttatacaatcattggacatttaccttttc-tcttttgtgagttgcctctttatatacttattgatttgtgagaactctttatataGGAGAGCAATCACAGCTCATTTAATGAATCCAGCTTCCAATATTTCACAA---ATATTGGCCTTTTGTTTGAGGTATTTGTAAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119225171 225 + 128539186 aaatattgcagtttttaaatgacc----ctttctccaattaatagtgaagtttgaatatccttttatacattcattggacatttaccttttc-tcttttgtgagttgcctctttatatacttattgatttgtgagaactctttatataGGAGAGCAATCACAGCTCATTCAATGAATCCAGCTTCCAATATTTCACAA---ATATTGGCCTTTTGTTTGAGGTATTTGTAAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 554960 223 + 6255621 aaatgttgcag--tttaaatgacc----ctttctccaattaatagtaaagtttgaatatccttttatgcattcattggacatttaccttttc-tcttttgtgagttgcctctttaTATACTTACTGATTTGTGAGAACTCTTTATATAGGAGAGCAATCACAGCTCATTCAATGAATCCAGCTTCCAATATTTCACAA---ATATTGGCCTTTTGTTTGAGGTATTTGTAAAA i manLeu1.NW_012103587v1 I 381 C 0 s colAng1.NW_012116043v1 4602501 223 - 8658521 aaatattgcag--tttaaatgacc----ctttctccaattaacagtaaagtttgaatatccttttatacattcattggacatttaccttttc-tcttttgtgagttgcctctttatatacttagtGATTTGTGAGAACTCTTTATATAGGAGAGCAATCACAGCTCATTCAATGAATCCAGCTTCCAATATTTCACAA---ATATTGGCCTTTTGTTTGAGGTATTTGTAAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803749 213 + 124281992 aaaggttccat--tttaaatgacc----ctttctccaattaataataa----tgaatagccttttagacattcattggacatttaccttttc-tcttt--tgAGTTG-CTCTTTGTATACTTACTGATTTGTAAGAACTC--TATATAGAAGAGCAATCACAGTTCATTCAATGAATCCAGCTTCCAATATTTCACAA---ATATTGGCCTTTTACTTAAGGTATTTGT-AAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448613 216 - 9212255 aaacattctat--tttaaatgacc----ctttctccaattaataataa----tgaatagccttttatacattcattgaacatttatcttttc-tcttttgtgagttacctcttTGATTACTTATTGATTTGTGAGAACTC--TATATAGAAGAGCAATCACAGTTCATTCAATGATTCCAGCTTCCAATATTTCACAA---ATATTGGCCTTTTATTTCAGATATTTGT-AAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2863254 207 + 4466143 aaatattccat--tttaaatgagc----cttcctccaat---taatag----tgagtagccttttatacattcattggacatttaccttttt-tG-----TGAGTTGCCTCTTTGTATACTTATTGATTTGTGAGAACTC--TGTATAGAAAAG-AATCACAGTTCATTCAATGAATCCAGCTTCCAATATTTCACAA---ATATTGGCCTTTTATTTAAGGTATTTGT-AAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1569873 214 + 5364348 aag-attccat--tttaaatgacc----ctttctccaattaataataa----tgaatagccttttagacattcgctggacatttaccttttc-tcttttgtgagttgcctctttgtatacttAATGATTTGTGAGAACTC--TACATAGAAGAGCAATCGCAGTTCATTCAATGAATCCAGCTTCCAGTATTTCACAA---ATATTGGCCTTTTATTTAAGGTA-TTGT-AAA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9462832 219 - 31815103 aaatattgccg--tttaaatgatc----ttttcttc----aatagtgaagtttgaatatctttttatatattcattagacacttgccttttc-tcttttgtaagttgcctctttatatatttATTGATTTGAGAGAACTCTTTATATACGAGAGTGATTATGGTTCATTCAATGAATACAGCTTACATTATTTCACAA---ATATTGACCTTTTGTCTAAAGTATTTCTAAAA i micMur3.chr21 C 0 I 31 s proCoq1.NW_012154285v1 6712340 219 - 9870158 aaatattgcag--tttaaatgatc----ttttcttcaattaatagtgaagttggaatatctttttatatattcattggacatttgccttttt-tcttttgtgaattgcctttttatatACTTACTGATCTGTGAGAATTCTTTATGTACAAGAGTG----TGGTTCATTCAATGAATCCAGCTTACATTATTTCACAA---ATATTGACCTTTTGTCTAAAGTATTTCTAAAA i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4293201 224 + 7922563 aaatattgcag--tttaaagaata----ctttcttcaattaaaagtaaagtttgagtatctttttatatatttgctggacatttgcctttttatcttttgtgagttgcctgcctatatgcttATTGGTTTATGAGAACTCTTTATATAGAACAGCAATCATAGTTCATTCAATGAATTCAGCTTATGGTATTTCACAA---ATACTGACCTTTTGTCTAAAGTATTTTTAAAA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33150365 226 - 38964690 aaatagtgtag--tttaaataagcacttctttcttcaattcatagtgaagtctgaatatcttcttacgtgctcattggacatttgtcttttc-tcttttgtgagttgcctttttatgtgcttattgatttgtgagaactctttatata-AAGAGCAATTGTGGCTAGTCCAATGAATCTAGCTTGCAGTACTTCACCA---ATATTGACCTTTTATTTAAAGTATTTATAAAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 827147 225 - 1116856 aaatactgtat--ttcagattagc----atttcttcagttaatagtgaagcttgaacatctttttatacatttgtttgccagttgtcttttc-ccctttgtgaattgtctctttacatgcttattgATGTGTGGGGACTCTCTATA-GTAAGAGCAATCCCAGTTAATTCATGGTTTCCCACTCATAGGACTTAAAAAAATATATTGGCTTTTTGTTTAATTTATTTCTTAAA i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124804825 909 + 151834684 I a score=49692.000000 s hg38.chr12_KI270834v1_alt 59510 4 + 119498 AAGG s panTro5.chr12 127345568 4 + 137163284 AAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696798 4 + 135337776 AAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209773 4 - 8369578 AAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857667 4 + 106955855 AAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123983254 4 + 133663169 AAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128230646 4 + 137757926 AAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10630286 4 - 16319837 AAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12253359 4 + 20526591 AAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119225396 4 + 128539186 AAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 555183 4 + 6255621 AAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4602724 4 - 8658521 AAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803962 4 + 124281992 AAGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448829 4 - 9212255 AAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2863461 4 + 4466143 AAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1570087 4 + 5364348 AAGG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6712559 4 - 9870158 GAAT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4293425 4 + 7922563 GAGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33150591 4 - 38964690 AAAA i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 827372 4 - 1116856 AATG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9463051 31 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I a score=574867.000000 s hg38.chr12_KI270834v1_alt 59514 38 + 119498 GAAAAACTAA--TATGCTTGATCTAGCTTT-AAATCTGATG s panTro5.chr12 127345572 38 + 137163284 GAAAAACTAA--TATGCTTGATCTAGCTTT-AAATCTGATG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696802 38 + 135337776 GAAAAACTAA--TATGCTTGATCTAGCTTT-AAATCTGATG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209777 37 - 8369578 GAAAAACT-A--TATGCTTGATCTAGCTTT-AAATCTGATG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857671 40 + 106955855 GAAAAACTAAATTATGCTTGATCTAGCTTT-AAATCTGATG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123983258 38 + 133663169 GAAAAACTAA--TATGCTTGATCTACCTTT-AAATCTGATG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128230650 38 + 137757926 GAAAAACTAA--TATGCTTGATCTACCTTT-AAATCTGATG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10630290 38 - 16319837 GAAAAACTAA--TATGCTTGATCTACCTTT-AAATCTGATG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12253363 38 + 20526591 GAAAAACTAA--TATGCTTGATCTACCTTT-AAATCTGATG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119225400 38 + 128539186 GAAAAACTAA--CATGCTTGATCTACCTTT-AAATCTGATG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 555187 38 + 6255621 GAAAAACTAA--TATGCTTGATCTACCTTT-AAATCTGATG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4602728 38 - 8658521 GAAAAACTAA--TATGCTTGATCTACCTTT-AAATCTGATG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114803966 38 + 124281992 GAAAAATGAA--TATGCATGATCTACCTTT-AAATCTGATG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448833 38 - 9212255 GAAAAACGAA--TATGCATGATCTACCTTT-AAATCTGATG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2863465 38 + 4466143 GAAAAACGAA--TATGCATGATCTACCTTT-AAATCTGATG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1570091 38 + 5364348 GAAAAACGAA--TATGCATGATCTACCTTT-AAACCTGATG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9463082 38 - 31815103 GAAAAACTAA--CATGCCTGAGTTACCTTT-AAATCTGATA i micMur3.chr21 I 31 C 0 s proCoq1.NW_012154285v1 6712563 38 - 9870158 GAAAAACTAA--TATGCCTGAGTTACCTTT-AAATCTGATA i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4293429 38 + 7922563 GAAAAACTAA--TATGCTTGATTTATCTTT-AAATCTGATA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33150597 37 - 38964690 GAAAAA--AA--TTTGGTTGATTTACCTTTAAAATCTGATA i canFam3.chr26 I 2 I 395 s dasNov3.JH568189 827376 33 - 1116856 -AAAAACTAT--TA----TGATATACTTTT-CAATCTGATA i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124804825 909 + 151834684 I a score=364917.000000 s hg38.chr12_KI270834v1_alt 59552 25 + 119498 AAATACATAATT-----GAAATCATTCATT s panTro5.chr12 127345610 25 + 137163284 AAATACATAATT-----GAAATCATTCATT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696840 25 + 135337776 AAATACAAAATT-----GAAATCATTCATT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209814 25 - 8369578 AAATACATAATT-----GAAATCATTCATT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857711 25 + 106955855 AAATACATAATT-----GAAATCATTCATT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123983296 25 + 133663169 AAATACATAATT-----GAAATCATTCATT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128230688 25 + 137757926 AAATACATAATT-----GAAATCATTCATT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10630328 25 - 16319837 AAATACATAATT-----GAAATCATTCATT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12253401 25 + 20526591 AAATACATAATT-----GAAATCATTCATT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119225438 25 + 128539186 AAATACATAATT-----GAAATCATTCATT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 555225 25 + 6255621 AAATACATAATT-----GAAATCATTCATT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4602766 25 - 8658521 AAATACATAATT-----GAAATCATTCATT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114804004 25 + 124281992 AAATACATAATT-----GAAATCATTTATT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448871 25 - 9212255 AAATATACCATT-----GAAATCATTCATT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2863503 25 + 4466143 AAATACATAATT-----GAAATCATTCATT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1570129 25 + 5364348 AAATATATAATT-----GAAATCATTCATT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9463120 25 - 31815103 AAATATGTGATT-----GAATTCATTCAtt i micMur3.chr21 C 0 I 413 s proCoq1.NW_012154285v1 6712601 25 - 9870158 AAATATGTAATT-----GAATTCATTCATT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4293467 25 + 7922563 AAACATGTCATT-----GAATTTATTAGTT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33151029 28 - 38964690 aaataaataaatcctcaaaaaaTATGTG-- i canFam3.chr26 I 395 C 0 s dasNov3.JH568189 827409 25 - 1116856 AAATATGTAACT-----Gaaataatttatt i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124804825 909 + 151834684 I a score=848241.000000 s hg38.chr12_KI270834v1_alt 59577 68 + 119498 GTTAAAATATAACTG-TTTGCAATTGTTTTCCACATTTTTC-TATAGGACAAGGCATTCCCCACTGGAAA s panTro5.chr12 127345635 69 + 137163284 GTTAAAATATAACTGTTTTGCAATTGTTTTCCACATTTTTC-TGTAGGACAAGGCATTCCCCACTGGAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696865 69 + 135337776 GTTAAAATATAACTGTTTTGCAATTGTTTTCCACATTTTTC-TGTAGGACAAGGCATTCCCCACTGGAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209839 69 - 8369578 GTTAAAATGTAACTGTTTTGCAATTGTTTTTCACATTTTTC-TGTAGGATAAGGCATTCCCCACTGGAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857736 64 + 106955855 GTTAAAATGTAACTG-----TAATTGTTTTCCACATTTTTC-TGTAGGATAAGGCATTCCCCACTGGAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123983321 69 + 133663169 ATTAAAATGTAACTGTTTTGCAATTGTTTTCCACAGTTTTC-TGTAGGATAAGACATTTCCCACTAGAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128230713 69 + 137757926 ATTAAAATGTAACTGTTTTGCAATTGTTTTCCACAGTTTTC-TGTAGGATAAGACATTTCCCACTAGAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10630353 69 - 16319837 ATTAAAATGTAACTGTTTTGCAATTGTTTTCCACAGTTTTC-TGTAGGATAAGACATTTCCCACTAGAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12253426 69 + 20526591 ATTAAAATGTAACTGTTTTGCAATTGTTTTCCACAGTTTTC-TGTAGGTTAAGACATTTCCCACTAGAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119225463 69 + 128539186 ATTAAAATGTAACTGTTTTGCAATTGTTTTCCACAGTTTTC-TGTAGGATAAGACATTTCCCACTAGAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 555250 69 + 6255621 ATTAAAATGTAACTATTTTGCAATTGTTTTCCACAGTTTTC-TGTAGGATAAGACATTTCCCACTAGAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4602791 69 - 8658521 ATTAAAATGTAACTGTTTTGCAATTGTTTTCCACAGTTTTC-TGTAGGATAAGGCATTTCCCACTAGAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114804029 69 + 124281992 ATTAAAATGTAACTGTTTTGCAATTGTTTTCCACATTTTTC-TGTAGGATAAGACATTCCCCCCAGGAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448896 69 - 9212255 ATTAAAATGTAACTGTTTTGCAATTGTTTTCCACATTTTTC-TGTAGGATAAGACATTCCCCGCTGGAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2863528 67 + 4466143 ATTAAAATGTAAC--TTTTGCAATTGTTTTCCACATTTTTC-TGTAGGATAAGACATTCCCTGCCGGAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1570154 69 + 5364348 ATTAAAATGTAACTGTTTTGCAATTGTTTTCCACATTTTTC-TGTAGGATAAGACATTCCCCGCTGGAAG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6712626 66 - 9870158 ATTAAAATATA---GTTTTCCCATTGTTTTCTACATTTTCC-TGTAGGATAAGACGTTCCCCTCTGGAAA i proCoq1.NW_012154285v1 C 0 I 5 s otoGar3.GL873618 4293492 70 + 7922563 ATTAAAATATAGTTGTTTTATAATTGTTTTCTACATTTTCTATGTAGGATAAAACATTCCCCTCTGGCAA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33151057 50 - 38964690 ATCAAAATGTAATTGTTTTATAATTG-----AACATTTTTC-TA---GACAAG----------TTGGTA- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 827434 65 - 1116856 -attaaatataGTTG--TTACAACTGTTTTCTATGTTTTTT-TGT-GGATAAGAGGCTACCCTCTGGGTA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9463145 413 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I a score=-26065.000000 s hg38.chr12_KI270834v1_alt 59645 11 + 119498 ----G---TTT----------TATTAT-----------------T s panTro5.chr12 127345704 11 + 137163284 ----G---TTT----------TATTAT-----------------T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696934 11 + 135337776 ----G---TTT----------TATTAT-----------------T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209908 11 - 8369578 ----G---TTT----------TGTTAT-----------------T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857800 14 + 106955855 ----GTGtttt----------tttttt-----------------t i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123983390 20 + 133663169 ----G---ATT----------TTTTGTTTTGTTTTG--------T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128230782 20 + 137757926 ----G---ATT----------TTTTGTTTTGTTTTG--------T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10630422 30 - 16319837 ----G---ATTttttgttttgttttgttttgttttg--------t i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12253495 28 + 20526591 ----G---Att----------ttttgttttgttttgttttggttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119225532 28 + 128539186 ----G---Att----------ttttgttttgttttgttttgtttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 555319 28 + 6255621 ----G---ATT----------ttttgttttgttttgttttgtttt i manLeu1.NW_012103587v1 C 0 I 6 s colAng1.NW_012116043v1 4602860 11 - 8658521 ----G---GTT----------TTTTTT-----------------T i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114804098 11 + 124281992 ----G---TTT----------GTTTTT-----------------T i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448965 10 - 9212255 ----G---TTT----------G-TTTT-----------------T i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2863595 11 + 4466143 ----G---TTT----------GTTTTT-----------------T i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1570223 11 + 5364348 ----G---TTT----------GTTTTT-----------------T i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4293562 7 + 7922563 ----A---GTT----------GGT--------------------- i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 827499 8 - 1116856 AGCTG---ATT---------------------------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9463145 413 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6712692 5 - 9870158 I e canFam3.chr26 33151107 0 - 38964690 C a score=616318.000000 s hg38.chr12_KI270834v1_alt 59656 43 + 119498 T-TTTTTCTGTTGATTTGTCCAGGTAAATCTGAGGCATTTTCCC s panTro5.chr12 127345715 43 + 137163284 T-TTTTTCTGTTGATTTGTCCAGGTAAATCTGAGGCATTTCCCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696945 43 + 135337776 T-TTTTTCTGTTGATTTGTCCAGGTAAATCTGAGGCATTTCCCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209919 43 - 8369578 T-TTTTTCTGTTGATTTGTCCAGGTAAATCTGAGGCATTTTCCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857814 43 + 106955855 t-tttttCTGTTGATTTGTCCAGGTAAATCTGAGGCATTTTCCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123983410 43 + 133663169 T-TTTCCCTGTTGATTTGTCCAGGTAAATCTGAGGCATTTTCCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128230802 43 + 137757926 T-TTTCCCTGTTGATTTGTCCAGGTAAATCTGAGGCATTTTCCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10630452 43 - 16319837 t-ttTCCCTGTTGGTTTGTCCAGGTAAATCTGAGGCATTTTCCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12253523 43 + 20526591 t-tttccctgttgatttgtCCAGGTAAATTTGAGGCATTTTCCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119225560 43 + 128539186 t-tttccctgttgatttgtCCAGGTAAATCTGAGGCATTTTCCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 555353 43 + 6255621 t-tttCCCTGTTGATTTGTCCAGGTAAATCTGAGGCATTTTCTC i manLeu1.NW_012103587v1 I 6 C 0 s colAng1.NW_012116043v1 4602871 43 - 8658521 C-TTTTTCTGTTGATTTGTCCAGGTAAATCTGAGGCATTTTCCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114804109 43 + 124281992 G-TTTTTCTGTTGATTTGTCCTGGTGAACTGGAGGCATTTTCCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 448975 43 - 9212255 G-TTTTTCTGTTGATTTGTCCTGGTTAACCGGAGGCATTTTTCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2863606 44 + 4466143 GTTTTTTCCGTTGATTTGTCCTGGTAAACCGGAGGCATTTTTCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1570234 42 + 5364348 --TTTTTCTGTTGATTTGTCCTGGTAAGCCGGAGGCATTTTTCC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9463558 43 - 31815103 T-TTTTTCTGTTGATTTGTCCAGGTGAATCTCAGGCATTTTCCC i micMur3.chr21 I 413 I 802 s proCoq1.NW_012154285v1 6712697 43 - 9870158 T-TTTTTCTGTTGATTCGTCCTGGTGAATCTGAGGCGGTTTCCC i proCoq1.NW_012154285v1 I 5 I 807 s otoGar3.GL873618 4293569 43 + 7922563 T-TTTTTCTGTTGATTTGTCCTGGCAAACCCAAGGCCTTTTCCT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33151107 37 - 38964690 ---TTTTCTGTTGACCAGCCCTGGTAAATCGGA--CATTCCT-- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 827507 42 - 1116856 --TTTCTCTGTTGATCAGTCCCGATAAATCAGATGCCTTTTCCT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124804825 909 + 151834684 I a score=3564671.000000 s hg38.chr12_KI270834v1_alt 59699 380 + 119498 CTAAAGTAGC--------------GCCTCGAGGAACAGC--AGAGAGGATGT-TGAGGGACAGAG---ATCTGGAGGAGGTTGAGGACACACAGGGCTGTGTCTGGGCCCT--------AGGAAGTGGCGAG--G-GTTGGGTAGTGGGGTCAGAAC-AGGT---------GTT--CAGA---G----------------AGTAGTGCCAGGAGCTGCT---GGGGAGGGGA----GGCGGCTGCACTC--GGGAGGGGTGAGGAA-GGTTTGCAGGC----GACAGGCAGAACTGGAGACCAGA-GTCTA-TTGGCCAGAAGGCATCCTGGTTGCGT-------------TGCGCGCGCGCGCgtgtgtgtgca----cacgtgtgtgtgtgtgtgtgagcatgtgttctagtgcatgccagg----gtgcaagtgagtgtgtggctgagtgtgaacatgtgggaatgactgtgtga------------g s panTro5.chr12 127345758 380 + 137163284 CTAAAGTAGC--------------GCCTCGAGGAACAGC--AGAGAGGATGT-TGAGGGACAGAG---ATCTGGAGGAGGTTGAGGACACACAGGGCTGTGTCTGGGCCCT--------AGGAAGTGGCGAG--G-GTTGGGTAGTGGGGTCAGAAC-AGGT---------GTT--CAGA---G----------------AGTAGTGCCAGGAGCTGCT---GGGGAGGGGA----GGCGGCTGCACTC--GGGAGGGGTGAGGAA-GGTTTGCAGGC----GACAGGCAGAACTGGAGACCAGA-GTCTA-TTGGCCAGAAGGCATCCTGGTTGCGT-------------TGCGCgtgtgtgtgtgtgtgtgtg----cacatgtgtgtgtgtgtgtgagcatgtgttctagtgcatgccagg----gtgcaagtgagtgtgtggctgagtgtgaacatgtgggaatgactgtgtga------------g i panTro5.chr12 C 0 C 0 s panPan2.chr12 125696988 378 + 135337776 CTAAAGTAGC--------------GCCTCGAGGAACAGC--AGAGAGGATGT-TGAGGGACAGAG---ATCTGGAGGAGGTTGAGGACACACAGGGCTGTGTCTGGGCCCT--------AGGAAGTGGCGAG--G-GTTGGGTAGTGGGGTCAGAAC-AGGT---------GTT--CAGA---G----------------AGTAGTGCCAGGAGCTGCT---GGGGAGGGGA----GGCGGCTGCACTC--GGGAGGGGTGAGGAA-GGTTTGCAGGC----GACAGGCAGAACTGGAGACCAGA-GTCTA-TTGGCCAGAAGGCATCCTGGTTGCGT-------------TGCGCgtgtgtgtgtgtgtgtgtg----cac--gtgtgtgtgtgtgtgagcatgtgttctagtgcatgccagg----gtgcaagtgagtgtgtggctgagtgtgaacatgtgggaatgactgtgtga------------g i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8209962 386 - 8369578 CTAAAGTAGC--------------GCCTCGAGGAACAGC--AGAGAGGATGT-TGAGGGACAGAG---ATCTGGAGGAGGTTGAGGACACACAGGGCTGTGTCTGGGCCCT--------AGGAAGTGGCGAG--G-GTTGGGTAGTGGGGTCAGAAC-AGGT---------GTT--CAGA---G----------------AGTAGTGCCAAGAGCTGCT---GGGGAGGGGA----GGCGGCTGCACTC--AGGAGGGGTGAGGAA-GGTTTGCAGGC----GACAGGCAGAACTGGAGACCAGA-GTCTA-TTGGCCAGAAGGCATCCTGGTtgcgt-------------tgcgcgcgtgtgtgtgcgtg--------cac--acgtgtgtgtgtgtgagcgtgtgttctagtgcatgccagg----gtgcaagtgagtgtgtggctgagtgtgaacatgtgggaatgaccgtgtgagtgtggctgtgtg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97857857 386 + 106955855 CTGAAGTAGC--------------GCCTTGAGGAACAGC--AGAGAGGATGT-TGAGGGACAGAG---ATCTGGAGGAGGTTGAGAACACACAGGGCTGTGTCTGGGCCCT--------AGGAAGTGGAGAG--G-GTTGGGTAGTGGGGTCAGAAC-AGGT---------GTT--CAGA---G----------------AGTAGTGCCAGGCGCTGCT---GGGGAGAGGA----GGCGGCTGCACTC--GGGAGGGGTGAGGAA-GGTTTGCAGGC----GACAGGCAGAACTGGAGACCAGA-GTCTA-TTGGCCAGAAGGCATCCTGGTtgtgt-------------tgcgtgcgtgtgtgtgcgtgcatg----tgt--gtgtgtgtgtgtgtgagcgtgtgttctagtgcatgccagg----gtgca----agtgtgtggctgagtgtgaacatgtgggaatgaccatgtaagtgtgactgtgtg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123983453 388 + 133663169 CTGAAGTAGC--------------GCCTCGAGGAACAGC--AGAGAGGATGC-TGAGGGACAGAG---ATCTGGAGGAGGTTGAGAACACACAGGGCTGTGTCTGGGCCCTAGGAAGTGAGGAAGTGGAGAG--G-GTTGGGTGGTGGGGTCAGAAC-AGGT---------GTT--CAGA---G----------------AGTAGTGCCAGGAGCTGCT---GGGGAGGGGA----GGCGGCTGCACTT--GGGAGGGGTGAGGAA-GGTTTGCAGGC----GACAGGCAGAGCTAGAGACCAGA-GTCTA-TTGGCCAGAAGGTCTCCTGGTTGCCg-------------tgcgtgtgggtgtgtgtgcacgca--cgtgtgtgtgtgtgtgtgtgtgagcttgtgttctagtgcatgccagg----gtgcactagagtgtgtggctgagtgtgaccgtgtgagcgtgactgtgt--------------g i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128230845 386 + 137757926 CTGAAGTAGC--------------GCCTCGAGGAACAGC--AGAGAGGATGC-TGAGGGACAGAG---ATCTGGAGGAGGTTGAGAACACACAGGGCTGTGTCTGGGCCCTAGGAAGTGAGGAAGTGGAGAG--G-GTTGGGTGGTGGGGTCAGAAC-AGGT---------GTT--CAGA---G----------------AGTAGTGCCAGGAGCTGCT---GGGGAGGGGA----GGCGGCTGCACTT--GGGAGGGGTGAGGAA-GGTTTGCAGGC----GACAGGCAGAGCTAGAGACCAGA-GTCTA-TTGGCCAGAAGGTCTCCTGGTTGCCg-------------tgcgtgtgggtgtgtgtgcacgca----cgtgtgtgtgtgtgtgtgtgagcttgtgttctagtacatgccagg----gtgcactagagtgtgtggctgagtgtgaccgtgtgagcgtgactgtgt--------------g i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10630495 390 - 16319837 CTGAAGTAGC--------------GCCTCGAGGAACAGC--AGAGAGGATGC-TGAGGGACAGAG---ATCTGGAGGAGGTTGAGAACACACAGGGCTGTGTCTGGGCCCTAGGAAGTGAGGAAGTGGAGAG--G-GTTGGGTGGTGGGGTCAGAAC-AGGT---------GTT--CAGA---G----------------AGTAGTGCCAGGAGCTGCT---GGGGAGGGGA----GGCGGCTGCACTT--GGGAGGGGTGAGGAA-GGTTTGCAGGC----GACAGGCAGAGCTAGAGACCAGA-GTCTA-TTGGCCAGAAGGTCTCCTGGTTGCtg-------------tgcgtgtgggtgtgtgtgcacgcatgtgtgtgtgtgtgtgtgtgtgtgagcttgtgttctagtgcatgccagg----gtgcactagagtgtgtggctgagtgtgaccgtgtgagcgtgactgtgt--------------g i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12253566 374 + 20526591 CTGAAGTAGC--------------GCCTCGAGGAACAGC--AGAGAGGATGC-TGAGGGACAGAG---ATCTGGAGGAGGTTGAGAACACACAGGGCTGTGTCTGGGCCCTAGGAAGTGAGGAAGTGGAGAG--G-GTTGGGTGGTGGGGTCAGAAC-AGGT---------GTT--CAGA---G----------------AGTAGTGCCAGGAGCTGCT---GGGGAGGGGA----GGCGGCTGCACTC--GGGAGGGGTGAGGCA-GGTTTGCAGGC----AACAAGCAGAGCTGGAGACCAGA-GTCTA-TTGGCCAGAAGGT----TGGTTGCCG-------------TGCATGTGGGTGTGTGTGCACGCA--------CGCGTATGTGTGTGTGAGCGTGTGTTCTAGTGCATGCCAGG----GTGT----GAGTGTGTGGCTGAGTGTGACCGTGTGAGCGTGACTGTGT--------------G i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119225603 364 + 128539186 CTGAAGTAGC--------------GCCTCGAGGAACAGC--AGAGAGGATGT-TGAGGGACAGAG---ATCTGGAGGAGGTTGAGAACACACAGGGCTGTGTCTGGGCCCTAGGAAGTGAGGAAGTGGAGAG--G-GTTGGGTGGTGGGGTCAGAAC-AGGT---------GTT--CAGA---G----------------AGTAGTGCCAGGAGCTGCT---GGGGAGGGGA----GGCGGCTGCACTC--GGGAGGGGTGAGGAA-GGTTTGCAGGC----GACAGGCAGAGCTGGAGACCAGA-GTCTA-TTGGCCAGAAGGTATCCTGGTTGCCg-------------tgcgt--------------------------gtgtgtgtgtgtgtgtgagcttgtgttctagtgcatgcccgg----gtgcaagtgagtgtgtggctgagtgtgaccgtgtgagcatgactgtgt--------------g i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 555396 362 + 6255621 CTGAAGTAAC--------------GCCTCGAGGAACAGC--AGAGAGGATGC-TGAGGGACAGAG---ATCTGGAGGAGGTTGAGAACACACAGGGCTGTGTCTGGGCCCTAGGAAGTGAGGAAGTGGAGAG--G-GTTGGGTAGCGGGGTCAGAAC-AGGT---------GTT--CAGA---G----------------AGTAGTGCCAGGAGCTGCT---GGGGAGGGGA----GGCGGCTGCACTC--GGGAGGGGTGAGGAA-GGTTTGCAGGC----GACAGGCAGAACTGGAGACCAGA-GTCTA-TTGGCCAGAAGGTTTCCTGGTTGCCg-------------tgc----------------------------gtgtgtgtgtgtgtgtgagcttgtgttctagtgcatgccagg----gtgcaagtgagtgtgtggctgagtgtgaccgtgtgagcgtgactgtgt--------------g i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4602914 382 - 8658521 CTGAAGTAGC--------------ACCTCGAGGAACAGC--AGAGAGGATGT-TGAGGGACAGAG---ATCTGGAGGAGGTTGAGAACACAGAGGGCTGTGTCTGGGCCCTAGGAAGTGAGGAAGTGGAGAG--G-GTTGGGTAGTGGGGTCAGAAC-AGGT---------GTT--CAGA---G----------------AGTAGTGCCAGGAGCTGCT---GGGGAGGGAA----GGCGGCTGCACTT--GGGAGGGGTGAGGAA-GGTTTGCAGGC----GACAGGCAGAGCTGGAGACCAGA-GTCTA-TTGGCCAGAAGGTATCCTGGTTGCCg-------------tgcgtgtgggtgtgtgtgcacgca----cgtgtatgtgtgtgtgtgtgagcatatgttctagtgcatgccagg----gtgc----aagtgtgtggctgagtgtgaccacgtgagcgtgactgtgt--------------g i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114804152 398 + 124281992 CTGAAGCAGT--------------GCCTTGGGGAATGGC--AGAGAGGACGT-TG-GGGGCAGAG---ATCTGGAGGAGGATGAGAACACACAGGGCTGTGTTTGGGCCCT--------AGGAAGCAGAGAG--G-GTTAGGTGGTGGGGCCAGAAC-AGGT---------GTT--CAGA---G----------------AGTAGTGCCAGAAGCTGCT---GGGGAGGGGA----GGCGGCTGCACTT--GGGAGGGGTGAGGAA-GGTTTGCAGGCGACAGACAGGCAGAGCTGGAGACCAGA-GTCTG-TTGGACGGAAGGCATCCTGGTtgtttgcgtgtgtgcatgtgcgtgtgtgcatgtgcatgtgcg----cac----------gtgtgtgagcgtgtatgCTAGGTCATGCCAGC----GTGCAAGTGAGTGTGTGGCTGAGTGTGAAAATGTGGGATTGACCAtgtgtgtgtgactgtgtg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 449018 370 - 9212255 CTGAAGTAGT--------------GCCTTGAGGAGCGGC--AGAGAGGATGT-TG-GGGGCAGAG---ATCTGGAGGCGGATGAGAACACCCGGGGCTGTGTCTGGGCCCT--------AGGAAGCAGAGAG--G-GTTAGGTAGTGGGGTCAGAAC-AGGT---------GTT--CAGT---G----------------AGTAATGCCAGAAGCTGCT---GGGGAGGGGA----GGTGGCTGCACTT--GGGAGGGATGAGGAAGGGTTTGCAGGT----GACAGGCAGAGCTGGAGACCAGA-GTCTA-TTGGCCGGAAGGCATCCTGGTTGCCT-------------tgcgtgtgtgcatgtgcatgcgcg----cac----------gtgtgtgtgactgtgtgctaggtcatgccagg----gtgcaagtgagcgtgtggctgagtgtgaaaatgtgggaatgacca------------tgtgcg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2863650 380 + 4466143 CTGAAGTAGT--------------GGCTTGAGGAATGGC--AGAGAGGACGT-TG-AGGGCAGAG---ATCTGGAGGAGGGTGAGAACACACAGGGCTGTGTCTGGGCCCT--------AGGAAGCAGAGAG--G-GTTAGGTAGTGGGGTCAGAAC-AGGT---------GTT--CAGA---G----------------AGTA-TGGCAGAAGCTGCT---GGGGAGGGGA----GGCGGCTGCACTT--GGGAGGGGTGAGGAA-GGTTTGCAGGT----GACAGGCAGAGCTGGAGACCAGA-GTCTA-CTGGCCTGAAGGCATCCTGGTTGCCT-------------TGCGTGTGTGCATGTGCATGCGTG----CAC--------ATGTGTGTGAGTGTGTGTGCTAGGTCATGCCAGG----GTGCAAGTTGGCGTGTGGCTGAGTGTGAAAATGTGGGAATGACCGTGTGTGTGTGACTGT--G i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1570276 362 + 5364348 CTGAAGTAGT--------------GCCTTGAGGAACGGC--AGAGAGGACGT-TGAGGGGCAGAG---ATCTGGAGGAGGATGAGAACACACAGGGCTGTGTCTGGGCCCT--------AGGAAGCAGAGAG--G-GTTGGGTAGTGGGGTCAGGAC-AGGT---------GTT--CAGA---G----------------AGTAGTGCCAGAAGCTGCT---GGGGAGGGGA----GGCGGCTGCACTT--GGGAGGGGTGAGGAA-GGTTTGCAGGT----GACAGGCAGAGCTGGAGACCAGA-GTCTA-TCGGCCGGAAGGCATTCTGGTTGCCT-------------TGCATGTGT--------------------------------GTGTGTGAGCGTGTGTGCTAGGTCATGCCAGG----GTGCAAGTGAGC--GTGGCTGAATGTGAAAATGTGGGAATGACCGTCtgtgtgtgactgtgtg i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4293612 246 + 7922563 TTGATGTAGC--------------ATCTTGAGAAACAGCAGAGAGAGGGTGT-CAAGGGACAGAA---CTTGGGAGGAGGATGAGTACACATTAGGCTGTGGCTGGGCCCT--------GGGAAACAGAAGG--G-ATTTGGTAGTGGGATCAGAGC-AGGC---------ATTCACATA---G----------------AGTAGTGCCAGGAGCTGCT---GGAAGGAGGA----------------------------CAGGCA-G---TGTAGGC----ATTGGACAGAACTGGACGCC--A-GTCTA-CTGGC----------------------------------TG---------------------------------------GTGTATGACTGTGTGTGTGAGTGCATA-----------------------------------------------------------------------G i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33151144 380 - 38964690 GTGAGGTAGTGGTCATGCATCTTGGCCTTGAGGAATGGC----AGAGGATGTCCAAGGGGTGGAG---GT-----GGAGAATGAAAGAGTTCTGGGCTATTGCTGGGCCCC--------AGGGAGTGGAGGGGAG-GTTGGGTAGTGGGATCACAGTGAGCC---------ATT--CATGCCTA----------------AGTGCTGTCAGGAGCCTT------GGAGGGGATGTGGGGGGCTGTACTC--AGGGAGGATGAATGG-GGTCTGCCGGC----ATCAGATGGAACTGCAGGCCGAATATTTG-GTGGC---AAGTTATCTGTGTTGCCT-------------tgagtgagtgagtg--------------agtgtgtgtgtgtgtgtgagagagagagagagagggaACTTGAAGGTCTGTGCAACCAAGG--------GAGTGTGAGCTTGTGAGTGTGAGAGTGCACA-----------G i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 827549 385 - 1116856 -------------------------------------AC--CTGGTAATTGT-TGTGCATCCTAGTCCGTCAGGAATTGGACTAGGATGTAGTGGGTTGTACCTGTGGCCT---------GGAAGTGTAGAG--ACAGTCGGTAGTGGGCTCAGAGT-GAGTCGTTCATGGGCT--CAGA---GTGAGTCGTTCATGCACGGTGGTGCTAAGAGATATTCTAGGGGAAGTGA----GACAGCTGCCCCTCAGGGAGGAGGAAGAGG-GGTCTACAGGG----GTCAGATAGAACCAGAGACCAAA-CTATATTTGACTGAAAGCCATTCTTGTGACCT-------------tgagtttgtgcgtgtgtgtgtgaaagtgcatataagtgtgactgtgtgattgcgtgt----gtACAtgcatgg----gtgtaaaaatgcatgtg--tgaaaatgcacgtgaaagtctgtgtgag---------------- i dasNov3.JH568189 C 0 I 1617 e micMur3.chr21 9463601 802 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6712740 807 - 9870158 I a score=2526559.000000 s hg38.chr12_KI270834v1_alt 60079 263 + 119498 tgtgaca------gtgtgagtgaa---------gcgtgtgtgtCAATGCATAGG-----GTTGAGGGAGGTAGGGAACAGAGAGA----GATCTCTCAGTTCCTGGAAA---TCTGCCATGTTTCTGA--------CA-----GTCGCTGGTTGCAATGAAAGTTTTAATTTCTGCTTCTGAGCTAAAAGAAACACTTGAGCAGAAAAAGCGTGCTTTAAACTTATGTCCTTATTCACATTTACATCGATTTCGTGTGT--ACATT-------------------GATTTCCTG-TCACGAAGTTAAAGTGCCTGCTTATTTCTC--- s panTro5.chr12 127346138 263 + 137163284 tgtgaca------gtgtgagtgaa---------gcgtgtgtgtCAATGCATAGG-----GTTGAGGGAGGTAGGGAACAGAGAGA----GATCTCTCCGTTCCTGGAAA---TCTGCCATGTTTCTGA--------CA-----GTCGCTGGTTGCAATGAAAGTTTTAATTTCTGCTTCTGAGCTAAAAGAAACACTTGAGCAGAAAAAGCGTGCTTTAAACTTATGTCCTTATTCACATTTACATCAATTTCGTGTGT--ACATT-------------------GATTTCCTG-TCACGAAGTTAAAGTGCCTGCTTATTTCTC--- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125697366 263 + 135337776 tgtgaca------gtgtgagtgaa---------gcgtgtgtgtCAATGCATAGG-----GTTGAGGGAGGTAGGGAACAGAGAGA----GATCTCTCCGTTCCTGGAAA---TCTGCCATGTTTCTGA--------CA-----GTCGCTGGTTGCAATGAAAGTTTTAATTTCTGCTTCTGAGCTAAAAGAAACACTTGAGCAGAAAAAGCGTGCTTTAAACTTATGTCCTTATTCACATTTACATCAATTTCGTGTGT--ACATT-------------------GATTTCCTG-TCACGAAGTTAAAGTGCCTGCTTATTTCTC--- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8210348 263 - 8369578 tgtgaca------gtgtgagtgaa---------gcgtgtgtgtCAATGCATAGG-----GTTGAGGGAGGTAGGGAACAGAGAGA----GATCTCTCAGTTCCTGGAAA---TCTGCCATGTTTCTGA--------CA-----GTCGCTGGTTGCAATGAAAGTTTTAATTTCTGCTTCTGAGCTAAAAGAAACACTTGAGCAGAAAAAGCGTGCTTTAAACTTATGTCCTTATTCACATTTACATCGATTTCGTGTGT--ACATT-------------------GATTTCCTG-TCACGAAGTTAAAGTGCCTGCTTATTTCTC--- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97858243 263 + 106955855 tgtgaca------gtgtgagtgaa---------gcgtgtgtgtCAATGCATAGG-----GTTGAGGGAGGTAGGGAATAGAGAGA----GATCTCTCAGTTCCTGGAAA---TCTGACACGTTTCTGA--------CA-----GTCGCTGGTTGCAATGAAAGTTTTAATTTCTGCTTCTGAGCTAAAAGAAACACTTGAGCAGAAAAAGTGTGCTTTAAACTTATGTCCTTATTCACATTTACATCGATTTCATATGT--ACATT-------------------GATTTCCTG-TCAGGAAGTTAAAGTGCCTGCTTATTTCTC--- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123983841 259 + 133663169 tgtgACA------GTGGGAGTGAA---------GCATGTGTATCAATGCATAGG-----GTTGAGGGAGGTAGGGAACAGAGAGA----G----CTCAGTTCCTGGAAA---TCTGACATGTTTCTGA--------CA-----GTCACTGGTTGTAATGAAAGTTTTAATTTCTACTTCTGAGAGAAAAGAGACACTTGAGCCGAAAAAGCATGCTTTAAACTTATGTCCTTGTTCACATTGACGTCGATTTCGTGTGT--ACATT-------------------GATTTCCTG-TCAAGAAGTTAAAGTGCCTGTTTGTTTCTC--- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128231231 259 + 137757926 tgtgaca------gtgggagtgaA---------GCATGTGTATCAATGCATAGG-----GTTGAGGGAGGTAGGGAACAGAGAGA----G----CTCAGTTCCTGGAAA---TCTGACATGTTTCTGA--------CA-----GTCACTGGTTGTAATGAAAGTTTTAATTTCTACTTCTGAGAGAAAAGAAACACTTGAGCCGAAAAAGCATGCTTTAAACTTATGTCCTTGTTCACATTGACGTCGATTTCGTGTGT--ACATT-------------------GATTTCCTG-TCAAGAAGTTAAAGTGCCTGTCTGTTTCTC--- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10630885 259 - 16319837 tgtgACA------GTGGGAGTGAA---------GCATGTGTATCAATGCATAGG-----GTTGAGGGAGGTAGGGAACAGAGAGA----G----CTCAGTTCCTGGAAA---TCTGACATGTTTCTGA--------CA-----GTCACTGGTTGTAATGAAAGTTTTAATTTCTACTTCTGAGAGAAAAGAAACACTTGAGCCGAAAAAGCACGCTTTAAACTTATGTCCTTGTTCACATTGACGTCAATTTCGTGTGT--ACATT-------------------GATTTCCTG-TCAAGAAGTTAAAGCGCCTGTTTGTTTCTC--- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12253940 263 + 20526591 TGTGACA------GTGTGAGTGAA---------GCATGTGTATCAATGCATAGG-----GTTGAGGGAGGTAGGGAACAGAGAGA----GATCTCTCAGTTCCTGGAAA---TCTGACATGTTTCTGA--------CA-----GTCACTGGTTGTAATGAAAGTTTTAATCTCTACTTCTGAGAGAAAAGAAACACTTGAGCCGAAAAAGCGTGCTTTAAACTTATGTCCTTGTTCACATTGACGTCGATTTCGTGTGT--ACATT-------------------GATTTCCTG-TCAAGAAGTTAAAGTGCCTGTTTGTTTCTC--- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119225967 259 + 128539186 tgtgaca------gtgtgagtgaa---------gcgtgcgtATCAATGCATAGG-----GTTGAGAGAGGTAGGGAAC--AGAGA----T--CTCTCAGTTCCTGGAAA---TCTGACATGTTTCTGA--------CA-----GTCACTGGTTGTAATGAAAGTTTTAATTTCTACTTCTGAGAGAAAAGAAACACTTGAGCCAAAAAAGCGTGCTTTAAACTTATGTCCTTGTTCACATTGACGTCGATTTCGTGTGC--ACATT-------------------GATTTCCTG-TCAAGAAGTTAAAGTGACTGTTTGTTTCTC--- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 555758 261 + 6255621 tgtgaca------gtgtgagtgAA---------GCATGTGTATCAATGCATAGG-----GTTGAGGGAGGTAGGGAACAGAGAGA----G--CTCTCAGTTACTGGAAA---TCTGACATGTTTCTGA--------CA-----GTCACTGGTTGTAATGAAAGTTTTAATTTCTACTTCTGAGAGAAAAGAAACACTTGAGCCGAAAAAGCATGCTTTAAACTTATGTCCTTGTTCACATTGACGTCGATTTTGTGTGT--ACATT-------------------GATTTCCTG-TCAAGAAGTTAAAGTGCCTGTTTGTTTCTC--- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4603296 263 - 8658521 tgtgaca------gtgtgagtgAA---------GCATGTGTATCAATGCACAGG-----GTTGAGGGAGGTAGGGAACAGAGAGA----GATCTCTCAGTTCCTGGAAA---TCTGACATGTTTCTGA--------CA-----GTCACTGGTTGCAATGAAAGTTTTAATTTCTACTTCTGAGAGAAAAGAAACACTTGAGCCGAAAAAGCGTGCTCTAAACTTATGTCCTTATTCACATTTACGTCGATTTCGTGTGT--ACATT-------------------GATTTCCTG-TCAAGAAGTTAAAGTGCCTGTTTATTTCTC--- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114804550 278 + 124281992 tgtgaca------gtgtgagtgaA---------GCGTATGTGTGAATGCATAGG-----GTTGAGGGAGGTAAGGAACGGGGAGA----GAGCTCTCGGTTCCTGGAAA---TCTGATATGTTTCTGA--------CG-----TTTGCTGCTTACAAGGAAAGTTTTAATTTCTAC-TCTGAGCTAAAAGAAACACTCGAGCAGAAAAAGTGTGCTTGAAACTTGTGTC---CTTCACATTTACACCGATTTTGTGTGT--ACGTTGGATTTCGTGTGTACATTGGATTTCCTG-TCTAGAAGTTAAAGTGTGTGCCGATTTCTC--- i calJac3.chr9 C 0 I 1 s saiBol1.JH378194 449388 280 - 9212255 tgtgaca------gtgtgagtgaa---------gcgtgtgtgtgAATGCATAGG-----GTTGAGGGAGGTAGGGAACAGGGAGA----GAGCACTCGGTTCCTGGAAA---TCTG--ATGTTTCTGA--------CA-----TTCGCTGGTTGCAAGGAGAGTTTTAATTTCTACTTCCGAGCTAAAAGAAACACTCGAGCAGAAAAAGTGTGCTTTCAACTTGTGTCCTTCTTCACATTTACACCGATTTTGTGTGT--ACGTTGGATTTCGTGTGTACATTGGATTTCCTG-TCTAGAAGTTAAACTGCATGCCGATTTCAC--- i saiBol1.JH378194 C 0 I 1 s cebCap1.NW_016107484v1 2864030 279 + 4466143 TGTGACA------GTGTGAGTGAA---------GCATGTGTGTGAATGCATAGG-----GTTGAGGGAGGTAGGGAACGGGAAGA----GAGCTCTCGGTTCCTGGAAA---TCTGATATGTTTCTGA--------CG-----TTCGCTGGTTGCAAGGAAAGTTTTAATTTCTACTTCTGAGCTAAAAGAGACACTCGAGCAGAAAAAGTGTGCTTTAAACTTGTGTC---CTTCACATTTATACCGATTTTGTGTGT--ACGTTGGATTTTGTGTGTACATTGGATTTCCTG-TCTAGAAGTTAAAGTGCCTGCTGATTTCAC--- i cebCap1.NW_016107484v1 C 0 I 1 s aotNan1.NW_018491581v1 1570638 282 + 5364348 agtgaca------gtgtgagtgaa---------gtgtgTGTGTGAATGCATAGG-----ATTGAAGGAGGTAGGGAACGGGGAGA----GAGCTCTCGGTTCCTGGAAA---TCTGATATGTTTCTGA--------CA-----TTCGCTGGTTGCAAGGAAAGTTTTAACTTCTACTTCTGAGCTAAAAGAAACACTCGAGCAGAAAAAGTGTGCTTTAAACTTGCGTCCTTCTTCACATTTACACCGATTTTGTGTGT--ACATTGGATTTCGTGTGTACATTGGATTTCCTG-TCTAGAAGTTAAAGTGCGTGCTGATTTCAC--- i aotNan1.NW_018491581v1 C 0 I 17 s otoGar3.GL873618 4293858 216 + 7922563 AATG-----------------------------------------------AGA-----GTTGAGGG------GGAACAGAGAG--------TTCTCAGTTTCTATAAA---TATGACATGTTTCTAA--------AATTAGGGTTGCTGGTCACAGTGAAATTTTTAACTTCTATTTCTGAGCTAAATTAAATACTCAACCAGAAAAGGTATACT-------------CTTACTTACATTTATGTCTTTTTCATGTGTGAATAGT-------------------ATTTTCTTGTTCCAGACTTTAAAATGGCTTGTCATTGAAT--- i otoGar3.GL873618 C 0 I 3 s canFam3.chr26 33151524 277 - 38964690 AATGCCATGCAAGGTATGAGCGGGACAGAGGTTGCATGTGCCCTCATGCGTGGGCATGCATTGGGGTTGAGAGGAGGCAGAGGGACCAGGATGTTTAAGTCACTGTAAACTTTCTGAGCAGTCTCAGAACTGAGGTCG-----GTAGCTTGTAGC----------TTAGTTCGTGC-CCTGAGGCCAAAGAAA--------ATGAACAGATGAGAATGAAGTTTGTGTCCTCATTTACATTTATGTCTACTTAGTGAGA--TTTTT-------------------AAAT------TTAAGAATTTAAAATGGCTTCTTACTTAGTTTC i canFam3.chr26 C 0 C 0 e micMur3.chr21 9463601 802 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6712740 807 - 9870158 I e dasNov3.JH568189 827934 1617 - 1116856 I a score=132489.000000 s hg38.chr12_KI270834v1_alt 60342 18 + 119498 CCTGTGTGCGTCTTC-CCA s panTro5.chr12 127346401 18 + 137163284 CCTGTGTGCGTCTTC-CCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125697629 18 + 135337776 CCTGTGTGCGTCTTC-CCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8210611 18 - 8369578 CCTGCGTGCGTCTTC-CCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97858506 18 + 106955855 CCTGTGTGCATCTTC-CCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984100 18 + 133663169 CCTGTACGCATCTTC-CCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128231490 18 + 137757926 CCTGTGCGCATCTTC-CCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10631144 18 - 16319837 CCTGTGTGCATCTTC-CCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12254203 18 + 20526591 CCTGTGTGCATCTTC-CCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119226226 18 + 128539186 CCTGTGTGCATCTTC-CCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556019 18 + 6255621 CCTGTGTGCATCTTC-CCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4603559 18 - 8658521 CCTGTGTGCATCTTC-CCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114804829 18 + 124281992 TCTGTACCCATTTTC-TCG i calJac3.chr9 I 1 C 0 s saiBol1.JH378194 449669 19 - 9212255 TCTATACCCATTTTCATAA i saiBol1.JH378194 I 1 C 0 s cebCap1.NW_016107484v1 2864310 18 + 4466143 TCTGGACCTATTTTC-TTA i cebCap1.NW_016107484v1 I 1 C 0 s otoGar3.GL873618 4294077 16 + 7922563 --TTAACACACCTCC-TCA i otoGar3.GL873618 I 3 I 2 s canFam3.chr26 33151801 16 - 38964690 CCTACATG--TCTTC-CCA i canFam3.chr26 C 0 C 0 e micMur3.chr21 9463601 802 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6712740 807 - 9870158 I e dasNov3.JH568189 827934 1617 - 1116856 I e aotNan1.NW_018491581v1 1570920 17 + 5364348 I a score=1499829.000000 s hg38.chr12_KI270834v1_alt 60360 187 + 119498 CAGGGTCTG--ATTTTCTGTAAACT---------------GCAGTATGTGGCTGGCGTTCACCTT------G---------------------GGGTACATTCTT-----------------CCCCCCTTTCCTCTGTTGCTGGGCTCATGGGGCTTCCCCCTCCTCT----------------GTTTCATGAC--AGGGAGTCCCTTC----------------CAGA---CTTTTCTTTCCTGA--------CCTACTTCCTCGAGCTTGGACAGACCCACGCCCTCTGCA s panTro5.chr12 127346419 187 + 137163284 CAGGGTCTG--ATTTTCTGTAAACT---------------GCAGTATGTGGCTGGCGGTCACCTT------G---------------------GGGTACATTCTT-----------------CTCCCCTTTCCTCTGTTGCTGGGCTCATGGGGCTTCCCCCTCCTCC----------------GTTTCATGAC--AGGGAGTCCCTTC----------------CAGA---CTTTTCTTTCCTGA--------CCTACTTCCTCGAGCTTGGACAGACCCACGCCCTCTGCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125697647 187 + 135337776 CAGGGTCTG--ATTTTCTGTAAACT---------------GCAGTATGTGGCTGGCGGTCACCTT------G---------------------GGGTACATTCTT-----------------CCCCCCTTTCCTCTGTTGCTGGGCTCATGGGGCTTCCCCCTCCTCT----------------GTTTCATGAC--AGGGAGTCCCTTC----------------CAGA---CTTTTCTTTCCTGA--------CCTACTTCCTCGAGCTTGGACAGACCCACGCCCTCTGCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8210629 187 - 8369578 CACGGTCTG--ATTTTCTGTAAACT---------------GCAGTATGTGGCTGGCGCTCACCTT------G---------------------GGGTACATTCTT-----------------CCCCCCTTTCCTCTGTTGCTGGGCTCATGGGGCTTCCCCCTCCTCT----------------GTTTCATGAC--AGGGAGTCCCTTC----------------CAGA---CTTTTCTTTCCTGA--------CCTACTTCCTCGAGCTTGGACAGACCCACGCCCTCTGCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97858524 187 + 106955855 CAGGGTCTG--ATTTTCTGTAAACT---------------GCAGTATGTGGCTGGCGCTCACCTC------G---------------------GGCTACATTCTT-----------------CCCCCGTTTCCTCTGTTGCTGGGCTTATGGGGCTTCCCCCTCCTCT----------------GTTTCACGAC--AGGGAGTCCCTTC----------------CAGA---CTTTTCTTTCCTGA--------CCTACTTCCTTGAGCTTGGACAGACCCGCGCCCTCTGCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984118 184 + 133663169 CGGGGTCTG--GTTTTCTGTAAACT---------------GCAGTATATGGCTGGCGCTCACCTC------G---------------------GGGTGCGT-CTT-----------------CCCCGCTTTCCTCTGTGGCTAGGCTCATGGGGCTTCCCCCTCCT------------------GTTCCACGAC--AGGGAGTCCCTTC----------------CAGA---CTCTTCTTTCCTGA--------CCCACTTCCTCAAGTTTGGACAGACCCACGCCCTCTGCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128231508 185 + 137757926 CGGGGTCTG--GTTTTCTGTAAACT---------------GCAGTATATGGCTGGCGCTCACCTC------G---------------------GGGTGCATCCTT-----------------CCCCACTTTCCTCTGTGGCTAGGCTCATGGGGCTTCCCCCTCCT------------------GTTCCACGAC--AGGGAGTCCCTTC----------------CAGA---CTCTTCTTTCCTGA--------CCCACTTCCTCAAGTTTGGACAGACCCACGCCCTCTGCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10631162 185 - 16319837 TGGGGTCTG--ATTTTCTGTAAACT---------------GCAGTATATGGCTGGCGCTCACCTC------G---------------------GGGTGCATTCTT-----------------CCCCACTTTCCTCAGTGGCTAGGCTCATGGGGCTTCCCCATCCT------------------GTTCCACGAC--AGGGAGTCCCTTC----------------CAGA---CTCTTCTTTCCTGA--------CCCACTTCCTCAAGTTTGGACAGACCCACGCCCTCTGCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12254221 183 + 20526591 CAGGGTCTG--ATTTTCTGTAAACT---------------GCAGTATGTGGCTGGCGCTCACCTC------G---------------------GGGTGCATTCCT-----------------CCCCACTTCCCTCTGTG--TAGGCTCGTGGGGCTTCCCCCTCCT------------------GTTCCGCGAC--AGGGATTCCTCTC----------------CAGA---CTCTTCTTTCCTGA--------CCCACTTCCTCAAGTTCGGACAGACCCACGCCCTCTGCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119226244 185 + 128539186 CAGGGTCTG--ATTTTCTGTAAACT---------------GCAGTATATGGCTGGCGCTCACCTC------G---------------------GGGTGCATTCTT-----------------CCCCGCTTTCCTCTGTGGCTAGGCTCATGGGGCTTCCCGCTCCT------------------GTTCCACGAC--AGGGAGTCCCTTC----------------CAGA---CTCTTCTTTCCTGA--------ACCACTTCCTCAAGTTTGGACAGACCCACGCCCTCTGCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556037 185 + 6255621 TGGGGTCTG--ATTTTCTGTAAACT---------------GCAGTATATGGCTGGCGCTCACCTC------G---------------------GGGTGCGTTCTT-----------------CCCCACTTTCCTCTGTGGCTAGGCTCATGGGGCTTCCCCCTCCT------------------GTTCCACGAC--AGGGAGTCCCTTC----------------CAGA---CTCTTCTTTCCTGA--------CCCACTTCCTCAAGTTTGGACAGACCCACGCCCTCTGCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4603577 185 - 8658521 TGGGGTCTG--ATTTTCTGTAAACT---------------GCAGTTTATGGCTGGCGCTCACCTC------G---------------------GGGTGCATTCTT-----------------CCCCGCTTTCCTCTGTTGCTAGGCTCATGGGGCTTCCCCCTCCT------------------GTTCCACAAC--AGGGAGTCCCTTC----------------CAGA---CTCTTCTTTCCTGA--------CCCACTTCCTCGAGTTTGGACAGACCCGTGCCCTCTGCG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114804847 147 + 124281992 CAGCGTCTA--ATGTTCTGTAAACT---------------GCAGTATGTGGCTGGCGCTCACCTC-----------------------------GGTGCGTTCTT-----------------CACCACTTGCCTCTGTTGCTGGTCTCATGGGGCTTCCCCCTCCTCT----------------GTTTCATGAC--AGGGAGTCCCTTC-----------------------------------------------------------------CAGACCTGTGCCCTCTGTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 449688 149 - 9212255 CAGTGTCTA--ATGTTCTATAAACT---------------GCAGTATGTGGCTGGTGCTCACCTC------G---------------------GGGTGCGTTCTT-----------------CCCCACTTTCCTCTGTTGCTGGTCTCATGAGGCTTCCGCCTCCTCT----------------GTTTCACGAC--AGGGAGTCCCTTC-----------------------------------------------------------------CAGACCTGCGCCCTCTGCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2864328 149 + 4466143 CAGCGTCTA--ATGTTCTGTAAACT---------------GCAGTATGTTGCTGGCGCTCACCTT------G---------------------GGGTGCGTTCTT-----------------CCCCACTTTCCTCTGTTGCTGGTCTCATGGGGCTTCCCCCTCCTCT----------------GTTTCACAAC--AGGGAGTCCCTTC-----------------------------------------------------------------CAGACATGTGCCCTCTGTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1570937 149 + 5364348 CAGTGTCTA--ATGTTCTATAAACT---------------GCAGTATGTGGCTGGCGCTCACCTC------G---------------------GGGTGCGTTCTT-----------------CCCCACTTTCCTCTGTTGCTGGTCTCACGGGGCTTCCCCCTCCTCT----------------GTTTCACGAC--AGGGAGTCCCTTC-----------------------------------------------------------------CAGACCTGCGCCCTCTGTA i aotNan1.NW_018491581v1 I 17 C 0 s otoGar3.GL873618 4294095 212 + 7922563 ATTCCTCTA--ATTTCACATCAACT---------------GTAGCATGTGGCT---GTGCACCTTTTAGAGG---------------------GTGTGTATATAA-----------------TCTTCCTTTCCTTTGTAATTTGGCCCCTGGGCTACTTCCTTCCTGT----------------CTCCCATGTC-------TTACCTTCTTCCCTCTTGGTAGCTCAGAGGTCCTTGTTTTCATGACAAGGAGGCCTTCTCTAGCCCGTTTGGACAACCTTGTGCCTTTTGCA i otoGar3.GL873618 I 2 I 2775 s canFam3.chr26 33151817 247 - 38964690 CAATCTCTTTCATTTTCAATGAACTCCTAATGGCGGGGGGGGGGGGTG-GGCTTGCACACACATT------ATGGTTGTACTTGTGTATGTGTGGGTGCTGTTTTTGGCCCATCTCTGTTTCCTCCCCTCACCCCCATCCCCATTCC----GGCTGTCCCCCTACCCTGTGACTCAGATGACTCATTTAACAACCGAAGGTGTCCTTTT-----------------------CTCTGCCATACTCA--------CGTGATCCC----ATCTGCACAGACCTGTGTCCCCTGCA i canFam3.chr26 C 0 C 0 e micMur3.chr21 9463601 802 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6712740 807 - 9870158 I e dasNov3.JH568189 827934 1617 - 1116856 I a score=366771.000000 s hg38.chr12_KI270834v1_alt 60547 42 + 119498 -----CTC-TCCTC-------------------CAGCGTCCCCACCCCGGAGCCCGCAGGG--AAGGGA s panTro5.chr12 127346606 42 + 137163284 -----CTC-TCCTC-------------------CAGTGTCCCCACCCCGGAGTCCGCAGGG--AAGGGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125697834 42 + 135337776 -----CTC-TCCTC-------------------CAGTGTCCCCACCCCGGAGCCCGCAGGG--AAGGGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8210816 41 - 8369578 -----CTC-TCCTC-------------------CAG-GTCCCCACCCCGGAGCCCGCAGGG--AAGGGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97858711 42 + 106955855 -----CTC-TCCTC-------------------CAGCGTCCCCGCCCCGGAGCCTGCAGGG--AAGGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984302 42 + 133663169 -----CTC-TCCTC-------------------CAGCATCCCTGCCCCAGAGCCTGCAGGG--AAGGGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128231693 42 + 137757926 -----CTC-TCCTC-------------------CAGCATGCCTGCCCCAGAGCCTGCAGGG--AAGGGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10631347 42 - 16319837 -----CTC-TCCTC-------------------CAGCATCCCTGCCCCAGAGCCTGCAGGG--AAGGGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12254404 42 + 20526591 -----CTC-TCCTC-------------------CAGCATCCCTGCCCCAGAGCCTGCAGGG--AAGGGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119226429 42 + 128539186 -----CTC-TCCTC-------------------CAGCATCCCTGCCCCAGAGCCTGCAGGG--AAGGGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556222 42 + 6255621 -----CTC-TCCTC-------------------CAGCATCCCTGCCCCAGAGCCTGCAGGG--AAGGGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4603762 42 - 8658521 -----CTG-TCCTC-------------------CAGCACCCCTGCCCCAGAGCCTGCAGGG--AAGGGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114804994 43 + 124281992 -----CTCTTCCCC-------------------CAGTGTCCTGGCCCTGGAGCCCGCAGGG--AAGGGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 449837 42 - 9212255 -----CTCTTCCCC-------------------CAGTGTCAC-GCCCCGGAGCCCGCAGGG--AAGGGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2864477 42 + 4466143 -----CTCTTCCCC-------------------CAGTGTCCC-GCCCCGGAGCCTGCAGGG--AAGGGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571086 43 + 5364348 -----CTCTTCCCC-------------------CAGTGTCCCCGCCCCAGAGCCTGCAGGG--AAGGGA i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33152064 68 - 38964690 TACTTGTC-ACCCCCTACACATGTGTGCATGTGCAGCATGTCCGTCACAGCTCACTCAACACCAAGGGA i canFam3.chr26 C 0 I 116 e micMur3.chr21 9463601 802 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6712740 807 - 9870158 I e dasNov3.JH568189 827934 1617 - 1116856 I e otoGar3.GL873618 4294307 2775 + 7922563 I a score=112893.000000 s hg38.chr12_KI270834v1_alt 60589 12 + 119498 GGCTGGTGGTGG s panTro5.chr12 127346648 12 + 137163284 GGCTGGTGGTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125697876 12 + 135337776 GGCTGGTGGTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8210857 12 - 8369578 GGCTGGTGGTGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97858753 12 + 106955855 GGCTGGTGGTGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984344 12 + 133663169 GGCTGGTGATGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128231735 12 + 137757926 GGCTGGTGATGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10631389 12 - 16319837 GGCTGGTGATGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12254446 12 + 20526591 GGCTGGTGATGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119226471 12 + 128539186 GGCTGGTGATGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556264 12 + 6255621 GGCTGGTGATGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4603804 12 - 8658521 GGCTGGTGATGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114805037 12 + 124281992 GGCTGATGGAGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 449879 12 - 9212255 GGCTGATCGGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2864519 12 + 4466143 GGCTAATGGGGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571129 12 + 5364348 GGCTCATGGGGG i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33152248 12 - 38964690 GGCTGGTTGTCT i canFam3.chr26 I 116 C 0 e micMur3.chr21 9463601 802 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6712740 807 - 9870158 I e dasNov3.JH568189 827934 1617 - 1116856 I e otoGar3.GL873618 4294307 2775 + 7922563 I a score=42792.000000 s hg38.chr12_KI270834v1_alt 60601 9 + 119498 TGACGCCCA s panTro5.chr12 127346660 9 + 137163284 TGACGCCCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125697888 9 + 135337776 TGACGCCCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8210869 9 - 8369578 TGACGCCCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97858765 9 + 106955855 TGACGCCTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984356 9 + 133663169 TGACGCCCG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128231747 9 + 137757926 TGACGCCCG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10631401 9 - 16319837 TGACGCCCG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12254458 9 + 20526591 TGACGCCCG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119226483 9 + 128539186 TGACGCCCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556276 9 + 6255621 TGACGCCCG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4603816 9 - 8658521 TGACGCCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114805049 6 + 124281992 TGACTC--- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 449891 6 - 9212255 TGACTC--- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2864531 6 + 4466143 TGACTC--- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571141 6 + 5364348 TGACTC--- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4297082 9 + 7922563 TGGTGACTT i otoGar3.GL873618 I 2775 C 0 s canFam3.chr26 33152260 9 - 38964690 CACCGCTGT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9463601 802 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6712740 807 - 9870158 I e dasNov3.JH568189 827934 1617 - 1116856 I a score=152773.000000 s hg38.chr12_KI270834v1_alt 60610 19 + 119498 TGTGCTCTGTGTCTGCATC s panTro5.chr12 127346669 19 + 137163284 TGTGCTCTGTGTCTGCATC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125697897 19 + 135337776 TGTGCTCTGTGTCTGCATC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8210878 19 - 8369578 TGTGCACTGTGTCTGCATC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97858774 19 + 106955855 TGTGCCCTGTGTCTGCACC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984365 19 + 133663169 TGTGCTCCATGTCTGTGTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128231756 19 + 137757926 TGTGCTCCATGTCTGTGTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10631410 19 - 16319837 TGTGCTCCATGTCTGTGTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12254467 19 + 20526591 TGTGCTCCGTGTCTGGGTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119226492 19 + 128539186 TGTGCTCCGTGTCTGTGTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556285 19 + 6255621 TGTGCTCCGTGTCTGTGTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4603825 19 - 8658521 TGTGCTCCGTGTCTGTGTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114805055 18 + 124281992 -GTGGGCTGTGTCTGTGCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 449897 18 - 9212255 -GTGGGCTGTGTCTGTGCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2864537 18 + 4466143 -GTGGGCTGTGTCTATGCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571147 18 + 5364348 -GTGGGCTGTGTCTGTGCC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4297091 14 + 7922563 TGTGCTCTATATTG----- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33152269 14 - 38964690 TGTGCTCTGTGTTG----- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 829551 17 - 1116856 TGTGCTCTGTGTCGTCA-- i dasNov3.JH568189 I 1617 C 0 e micMur3.chr21 9463601 802 - 31815103 I e mm10.chr5 124804825 909 + 151834684 I e proCoq1.NW_012154285v1 6712740 807 - 9870158 I a score=6172.000000 s hg38.chr12_KI270834v1_alt 60629 1 + 119498 G s panTro5.chr12 127346688 1 + 137163284 G i panTro5.chr12 C 0 C 0 s panPan2.chr12 125697916 1 + 135337776 G i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8210897 1 - 8369578 G i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97858793 1 + 106955855 G i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984384 1 + 133663169 A i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128231775 1 + 137757926 A i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10631429 1 - 16319837 A i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12254486 1 + 20526591 A i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119226511 1 + 128539186 A i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556304 1 + 6255621 A i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4603844 1 - 8658521 A i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114805073 1 + 124281992 G i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 449915 1 - 9212255 G i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2864555 1 + 4466143 G i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571165 1 + 5364348 G i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9464403 1 - 31815103 G i micMur3.chr21 I 802 C 0 s proCoq1.NW_012154285v1 6713547 1 - 9870158 G i proCoq1.NW_012154285v1 I 807 C 0 s otoGar3.GL873618 4297105 1 + 7922563 A i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33152283 1 - 38964690 G i canFam3.chr26 C 0 C 0 e mm10.chr5 124804825 909 + 151834684 I e dasNov3.JH568189 829568 0 - 1116856 C a score=3499808.000000 s hg38.chr12_KI270834v1_alt 60630 177 + 119498 CAGGTGTTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAGTTTCCGGGAAGACCTGAAGAGCCTCTATTTGAAACTTGGGATTGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCATGTGGCTGAGGAGGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT s panTro5.chr12 127346689 177 + 137163284 CAGGTGTTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAATTTCCGGGAAGACCTGAAGAGCCTTTATTTGAAACTTGGGATCGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCACGTGGCTGAGGAGGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125697917 177 + 135337776 CAGGTGTTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAATTTCCGGGAAGACCTGAAGAGCCTTTATTTGAAACTTGGGATCGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCACGTGGCTGAGGAGGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8210898 177 - 8369578 CAGGTGTTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACGATTTCCGGGAAGACCTGAAGAGCCTCTATTTGAAACTTGGGATCGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCATGTGGCTGAGGAGGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97858794 177 + 106955855 CAGGTATTTGAGATTCTGCTGAGCCGAGGCTACTCGGAGAACAATTTCCGGGAAGACCTGAAGAGCCTCTATTTGAAACTTGGGATTGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCATGTGGCTGAGGAGGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984385 177 + 133663169 CAGGTATTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAATTTCCGGGAAGACCTGAAGAGCCTCTATTTGAAACTCGGGATCGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCATGTGGCCGAGGAAGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128231776 177 + 137757926 CAGGTATTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAATTTCCGGGAAGACCTGAAGAGCCTCTATTTGAAACTCGGGATCGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCATGTGGCCGAGGAAGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10631430 177 - 16319837 CAGGTATTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAATTTCCGGGAAGACCTGAAGAGCCTCTATTTGAAACTCGGGATCGAGAACAAAGCAATGATCTTTCTGTTCACGGATGCCCATGTGGCCGAGGAAGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12254487 177 + 20526591 CAGGTATTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAATTTCCGGGAAGACCTGAAGAGCCTCTATTTGAAACTCGGGATCGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCATGTGGCCGAGGAAGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119226512 177 + 128539186 CAGGTATTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAATTTCCGGGAAGACCTGAAGAGCCTCTATTTGAAACTCGGGATCGAGAACAAAGCAATGATCTTTCTGTTCACGGATGCCCATGTGGCCGAGGAAGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556305 177 + 6255621 CAGGTATTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAATTTCCGGGAAGACCTGAAGAGCCTCTATTTGAAACTCGGGATCGAGAACAAAGCGACGATCTTTCTGTTCACGGACGCCCATGTGGCCGAGGAAGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4603845 177 - 8658521 CAGGTGTTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAATTTCCGGGAAGACCTGAAGAGCCTCTATTTGAAACTCGGGATCGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCATGTGGCTGAGGAAGGCTTCCTGGAGCTCATCAATAACATGCTGACCTCAGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114805074 177 + 124281992 CAGGTGTTTGAGATCCTACTGAGCCGAGGCTACTCGGAGAACAATTTCCGGGAAGACCTGAAGAGCCTGTATCTGAAACTCGGGATCGAGAACAAAGCAATGATCTTTCTCTTCACGGATGCCCACGTGGCCGAGGAGGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 449916 177 - 9212255 CAGGTGTTTGAGATCCTGCTGAGTCGAGGCTACTCGGAGAACAATTTCCGGGAAGACCTGAAGAGCCTGTATCTGAAACTCGGGATCGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCACGTGGCTGAGGAGGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2864556 177 + 4466143 CAGGTGTTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAATTTCCGGGAAGACCTGAAGAGCCTGTATCTGAAACTCGGGATCGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCACGTGGCTGAGGAGGGCTTCTTGGAGCTCATCAACAACATGCTGACCTCAGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571166 177 + 5364348 CAGGTGTTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAATTTCCGGGAAGACCTGAAGAGCCTGTATCTGAAACTCGGGATCGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCATGTGGCCGAGGAGGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9464404 177 - 31815103 CAGGTGTTCGAGATCATGCTGAGCCGCGGCTACGCAGAGAACAATTTCCGGGATGACCTGAAGAACCTCTATCTGAAACTTGGGATCGACAACAAAATGATGATCTTCTTGTTCACGGACGCGCACGTGGCCGAGGAGAGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i micMur3.chr21 C 0 I 2392 s proCoq1.NW_012154285v1 6713548 177 - 9870158 CAGGTGTTCGAGATCATGCTGAGCCGAGGCTACGCGGAGAACAATTTCCGGGATGACCTGAAGAACCTTTATCTGAAACTTGGGATTGAGAACAAAACGATGATCTTTCTGTTCACGGACGCCCACGTGGCCGAGGAGAGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4297106 177 + 7922563 CAGGTATTTGAGATCTTGCTGAGCCGAGGCTATGGGGAGAGCAATTTCCGGGAAGATCTGAAAAACCTTTATCTGAAACTTGGCATTGAGAACAAAACAATGATCTTTCTGTTCACGGATGCCCACGTGGCCGAGGAGGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124805734 177 + 151834684 CAGGTGTTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAATAACTTCCGGGATGATCTGAAGAACCTGTACATGAAGCTGGGCCTGGAGAACAAGATGATGATCTTCCTGTTCACAGACGCGCACGTGGCCGAGGAGGGCTTCCTGGAACTCATCAACAACATGCTGACCTCAGGT i mm10.chr5 I 909 C 0 s canFam3.chr26 33152284 177 - 38964690 CAGGTGTTTGAGATCCTTCTGAGCCGAGGCTACTCTGAGAACAATTTCCGGGAAGATCTGAAGAACCTTTATCTCAAACTCGGGACTGAGAACAAAATGATGATCTTCCTGTTCACGGACACCCACGTGGCCGAGGAGGGCTTCCTGGAGCTCATCAACAACATGCTGACATCAGGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 829568 175 - 1116856 --GGTGTTTGAGATCCTTCTGAGCCGGGGTTACTCCGAGAACAATTTCCGGGAGGATCTGAAGAACCTTTATCTGAAACTTGGGATCGAAAACAAAGTAATGATCTTCCTGTTCACGGATGCTCATGTGGCTGAGGAAGGTTTCCTGGAGCTCATCAACAATATGTTAACTTCAGGT i dasNov3.JH568189 C 0 C 0 a score=40110.000000 s hg38.chr12_KI270834v1_alt 60807 2 + 119498 AC s panTro5.chr12 127346866 2 + 137163284 AC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698094 2 + 135337776 AC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211075 2 - 8369578 AC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97858971 2 + 106955855 AC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984562 2 + 133663169 AC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128231953 2 + 137757926 AC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10631607 2 - 16319837 AC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12254664 2 + 20526591 AC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119226689 2 + 128539186 AC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556482 2 + 6255621 AC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4604022 2 - 8658521 AC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114805251 2 + 124281992 AC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 450093 2 - 9212255 AC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2864733 2 + 4466143 AC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571343 2 + 5364348 AC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6713725 2 - 9870158 AC i proCoq1.NW_012154285v1 C 0 I 148 s otoGar3.GL873618 4297283 2 + 7922563 AC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124805911 2 + 151834684 AC i mm10.chr5 C 0 C 0 s canFam3.chr26 33152461 2 - 38964690 AC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 829743 2 - 1116856 AC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I a score=34822.000000 s hg38.chr12_KI270834v1_alt 60809 4 + 119498 --AGCC s panTro5.chr12 127346868 4 + 137163284 --AGCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698096 4 + 135337776 --AGCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211077 4 - 8369578 --AGCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97858973 4 + 106955855 --AGCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984564 4 + 133663169 --AGCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128231955 4 + 137757926 --AGCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10631609 4 - 16319837 --AGCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12254666 4 + 20526591 --AGCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119226691 4 + 128539186 --AGCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556484 4 + 6255621 --AGCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4604024 4 - 8658521 --AGCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114805253 4 + 124281992 --AGCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 450095 4 - 9212255 --AGCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2864735 4 + 4466143 --AGCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571345 4 + 5364348 --AGCC i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124805913 4 + 151834684 --TGCC i mm10.chr5 C 0 I 2627 s canFam3.chr26 33152463 1 - 38964690 -----C i canFam3.chr26 C 0 I 3 s dasNov3.JH568189 829745 4 - 1116856 TGGG-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e otoGar3.GL873618 4297285 0 + 7922563 C a score=223629.000000 s hg38.chr12_KI270834v1_alt 60813 28 + 119498 AAGGCTG--------------GCGCCCGCT-GTGGCCAACACC s panTro5.chr12 127346872 28 + 137163284 AAGGCTG--------------GCGCCCGCT-GTGGCCAACACC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698100 28 + 135337776 AAGGCTG--------------GCGCCCGCT-GTGGCCAACGCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211081 28 - 8369578 AAGACTG--------------GCGCCCGCT-GTGGCCAACACC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97858977 28 + 106955855 ACGCCTG--------------GCACCCGCT-GTGGCCAACACC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984568 28 + 133663169 AAGGCTG--------------GTGCCCGCT-GTGGCCAGCTCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128231959 28 + 137757926 AAGGCTG--------------GTGCCCGCT-GTGGCCAGCTCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10631613 28 - 16319837 AAGGCTG--------------GTGCCCGCT-GTGGCCAGCTCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12254670 28 + 20526591 AAGGCTG--------------GTGCCCACT-GTGGCCAGCTCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119226695 28 + 128539186 AAGGCTG--------------GTGCCCACT-GTGGTCAGCTCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556488 28 + 6255621 AAGGCTG--------------GTGCCCACT-GTGGCCAGCTCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4604028 28 - 8658521 CAGGCTG--------------GTGCCCGCT-GTGGCCAGCTCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114805257 28 + 124281992 AAGGCCA--------------GTGCCCGCT-GTGGCCGGCATC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 450099 28 - 9212255 AAGGCCA--------------GCGCCCGCT-GTGGCCGGCATC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2864739 28 + 4466143 AAGGCCA--------------GCGCCTGCT-GTGGCCAGCATC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571349 28 + 5364348 AAGGCGA--------------GCGCCCGCT-GTGGCCGGCATC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4297285 12 + 7922563 ----------------------CGCCCG---------GCCTCT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33152467 42 - 38964690 GAGGCTGCTCCCACACGGGGTGCACCGGCT-GTATACAAAACC i canFam3.chr26 I 3 I 74 s dasNov3.JH568189 829749 31 - 1116856 AAGGCTG---------GAAATGTGTTTGCTGGTACTCAAG--- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I a score=1395072.000000 s hg38.chr12_KI270834v1_alt 60841 144 + 119498 CCGC-TCAGC-TCTTAAGGGAGTTC---------------ACTTTCTTC---AGCAGTTACCACCTCCAGACACTGTGGGTA-GCCCTGTGCGGG-TGTACCTGTTCCTCCCTCACGGC-GGCCCCTGAGATAGGTCTCATTATCTT---------------CCTT-------GGCTCCTCCTGTCCT-G--------- s panTro5.chr12 127346900 144 + 137163284 CCGC-TCAGC-TCTTAAGGGAGGTC---------------ACTTTCTTC---AGCAGTTACCACCTCCAGACACTGTGGGTA-GCCCTGTGCGGG-TGTACCTGTTCCTCCCTCATGGC-GGCCCCTGAGATAGGTCTCATTATCTT---------------CCTT-------GGCTCCTCCTGTCCT-G--------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698128 144 + 135337776 CCGC-TCAGC-TCTTAAGGGAGGTC---------------ACTTTCTTC---AGCAGTTACCACCTCCAGACACTGTGGGTA-GCCCTGTGCGGG-TGTACCTGTTCCTCCCTCATGGC-GGCCCCTGAGATAGGTCTCATTATCTT---------------CCTT-------GGCTCCTCCTGTCCT-G--------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211109 144 - 8369578 CCAC-TCAGC-TATTAAGGGAGGTC---------------ACTTTCTTC---AGCAGTTACCACCTCCAGACACTGTGGGTA-GCCCTGTGCGGG-TGTACCTGTTCCTCCCTCACGGC-GGCCCCTGAGATAGGTCTCATTATCTT---------------CCTT-------GGCTCCTCCTGTCCT-G--------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97859005 144 + 106955855 CCGC-TCAGC-TCTGAAGGGAGGTC---------------ACTTTCTTC---AGCAGTTACCACCTCCAGACACTGTGGGTA-GCCCTGTGCGGG-TGTCCCTGTTCCTCCCTCACGGC-GGCCCCTGAGATAGGTCTCGTTGTCTT---------------CCTT-------GGCTCCTCGTGTCCT-G--------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984596 145 + 133663169 CTGC-TCAGC-TCTGAAGGGAGGTC---------------GTTTTCTTC---AGCAGTTACCACCTCCAGACTCTGTGGGCA-GCCCTGCCCAGG-TGTCCCTGTTCCTCCCTCACAGCGGGCCCCTGAGATGGGTCTCATTATCTT---------------CCTT-------GGCTCCTCCTGTCCT-G--------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128231987 145 + 137757926 CTGC-TCAGC-TCTGAAGGGAGGTC---------------GTTTTCTTC---AGCAGTTACCACCTCCAGACTCTGTGGGCA-GCCCTGTCCAGG-TGTCCCTGTTCCTCCCTCACAGCGGGCCCCTGAGATGGGTCTCATTATCTT---------------CCTT-------GGCTCCTCCTGTCCT-G--------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10631641 145 - 16319837 CTGC-TCAGC-TCTGAAGGGAAGTC---------------GCTTTCTTC---AGCAGTTACCACCTCCAGACTCTGTGGGCA-GCCCTGTCCAGG-TGTCCCTGTTCCTCCCTCACAGTGGGCCCCTGAGATGGGTCTCATTATCTT---------------CCTT-------GGCTCCTCCTGTCCT-G--------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12254698 145 + 20526591 CTGC-TCAGC-TCTGAAGGGAGGTC---------------GCTTTCTTT---AGCAGTTACCACCTCCAGACTCTGTGGGCA-GCCCTGTCCAGG-TGTCCCTGTTCCTCCCTCACAGTGGGCCCCTGAGATAAGTCTCATTATCTT---------------CCTT-------GGCTCCTCCTGTCCT-G--------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119226723 144 + 128539186 CTGC-TCAGC-TCTGAAGGGAGGTT---------------GCTTTCTTC---AGCAGTTACCACCTCCAGACTCTGTGGGCA-GCCCTGTCCAGG-TGTCCCTGTTCCTCCCTCACAGTGGGCCCCTGAGATAGGTCTCATTATCTT----------------CTT-------GGCTCCTCCTGTCCT-G--------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556516 145 + 6255621 CTGC-TCAGC-TCTGAAGGGAGGTC---------------GCTTTCTTC---AGCAGTTACCACCTCCAGACTCTGTGGGCA-GCCCTGTCCAGG-TGTCCCTGTTCCTCCCTCACAGTGGGCCCCTGAGATAGGTCTCATTATCTT---------------CCTT-------GGCTCCTCCTGTCCT-G--------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4604056 145 - 8658521 CTGC-TGAGC-TCTGAAGGGAGGTC---------------GCTTTCTTC---AGCAGTTACCACCTCCAGACACTGTGGCTA-GCCCTGGCCGGG-TGTCCCTGTTCCTCCCTCACCGTGGGCCCCTGAGGTAGGTCTCATTATCTT---------------CCTT-------GGCTCCTCCTGTCCT-G--------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114805285 142 + 124281992 TCGG-TCA---TCTGAAGGGAGGTG---------------GCTTTCTTT---AGCAGTTACCACCTCCAGACACTGTGGGTG-GTTCTGTGCGG--TGTCCCTGTTCCTCCCTTGACGA-GGCTCCTGAAATAGATCTCATTATCTT---------------CCTT-------GGCTCCTCCTGTCCTGG--------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 450127 143 - 9212255 CCGG-TCC---TCTGAAGGGAGGTG---------------GCTTTCTTT---AGCAATTACCACCTCCAGACACTGTGGGTG-GCCCTGTGCGGA-TGTCCTTGTTCCTCCCTCGCCAA-GGCTCCTGAGATAGGTCTCATTATCTT---------------CCTT-------GGCGCCTCCCATCCTGG--------- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2864767 143 + 4466143 CCGG-TCA---TCTGAAGGGAGGTG---------------GCTTTCTTT---AGCAGTTACCACCTCCAGACACTGTGGGTG-GCCCTGTGCCGG-TGTCCCTGTCCCTCCCTCGCTGA-GGCTCCTGAGATAGGTCTCATTATCTC---------------CCTT-------GGCTCCTCCCATCCTGG--------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571377 143 + 5364348 CCGG-TCA---TCTGAAGGGAGGTG---------------GCTTTCTTT---AGCAGTTACCACCTCCAGACACTGTGGGTG-GCCCTGTGCAGG-TGTCCCTGTTCCTCCCTCGACGA-GGCTCCTGAGATAGGTCTCATTATCTT---------------CCTT-------GGCTCCTCCCGTCCTGG--------- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4297297 155 + 7922563 CTACATCAGC-TCTGCGGGGATGGC----------------CTTTTCTC---AGCATTTACCA----CAGGCACTGCTTGTA-GCCCTGTGAAGGTTGTCCCTG-CCCTTTCTTACAGC-AGCCCATGACAGAGGTCTTATTATCTCATTTTACACAACAGCCCTG-------GGGCCCTCCTGTCTT-G--------- i otoGar3.GL873618 C 0 I 63 s dasNov3.JH568189 829780 179 - 1116856 -TGC-TCAGCTTTTTGAGGGAGGCCATCTGATAAGTGTTAACTTTTTTTTAAAACCTTTACTACCTTTAGATACTTCATGTGCACTTTGAAAATG-TTTTCTTATTCCTCCCTCACAAC-TCCGTGTGCCTTAGGTCTGATAACCTT---------------CGTTTTGCTGAGACTCCTGTGGTTTT-CCCCTCTTTA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e canFam3.chr26 33152509 74 - 38964690 I a score=1409454.000000 s hg38.chr12_KI270834v1_alt 60985 147 + 119498 GAGTCTCCCGAGTGTGCCCCCTTCTCTCCGTCTGCGATGATGGCAGTATC-CTTGCAGTAAGAACAGGTGGTGTCTGGGCATCTGGCCGTGCCCCGGGCTGTGCTAAGTGTGCATCATACATTCCC--GTCTCCACAAAAACTTGATGAG s panTro5.chr12 127347044 147 + 137163284 GAGTCTCCCGAGTGTGCCCCCTTCTCTCCGTCTGCGATGATGGCAGTATC-CTTGCAGTAAGAACAGGTGGTGTCTGGGCATCTGGCCGTGCCCCGGGCTGTGCTAAGTGTGCATCATACATTCCC--GTCTCCACAAAAACTTGATGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698272 147 + 135337776 GAGTCTCCCGAGTGTGCCCCCTTCTCTCCGTCTGCGATGATGGCAGTATC-CTTGCAGTAAGAACAGGTGGTGTCTGGGCATCTGGCCGTGCCCCGGGCTGTGCTAAGTGTGCATCATACATTCCC--GTCTCCACAAAAACTTGATGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211253 146 - 8369578 GAGTCTCCCGAGTGTG-CCCCTTCTCTCCGTCTGCGATGATGGCAGTGCC-CTTGCAGTAAGAACAGGTGGTGTCTGGGCATCTGGCCGTGCCCCGGGCTGTGCTAAGTGTGCATCATACATTCCC--GTCTCCACAAAAACTTGATGAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97859149 147 + 106955855 GAGTCTCCCGAGTGTGCCCCCTTCTCTCCGTCTGCGATGATGGCAGTGCC-CTTGCAATGAGAACAGGTGGTGTCtgggcatctggctgtgccccgggccgtgctaagtgtgcggcatgcattccc--gtctccacaaaaacctggcgag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984741 147 + 133663169 GAGTCTGCCAAGTGTGCCCCCTTCTCTCCGTCTGCGATGATGGCAGTGCC-CTTGCAGTAAGAACAGGTGGTGTCtgggcgtctggctgtgccccgggccgtgctaagtgtgcatcatgcattcct--gtctccacaaaaacctgatgag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128232132 147 + 137757926 GAGTCTGCCAAGTGTGCCCCCTTCTCTCCGTCTGCGATGATGGCAGTGCC-CTTGCAGTAAGAACAGGTGGTGTCTGGGCGTCTGGCTGTGCCCCGGGCCGTGCTAAGTGTGCATCATGCATTCCT--GTCTCCACAAAAACCTGATGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10631786 147 - 16319837 GAGTCTGCCAAGTGTGCCCCCTTCTCTCCGTCTGCGATGATGGCAGTGCC-CTTGCAGTAAGAACAGGTGGTGTCtgggcgtctggctgtgccccgggccgtgctaagtgtgcatcatgcattcct--gtctccacaaaaacctgatgag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12254843 147 + 20526591 GAGTCTGCCAAGTGTGCCCCCTTCTCTCCGTCTGCGATGATGGCAGTGCC-CTTGCAGTAAGAACAGGTGGTGTCTGGGCGTCTGGCTGTGCCCGGGGCCGTGCTAAGTGTGCATCATGCATTCCT--GTCTCCACAATAACCTGATGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119226867 147 + 128539186 GAGTCTGCCAAGTGTGCCCCCTTCTCTCCGTCTGCGATGATGGCAGTGCC-CTTGCAGTAAGAACAGGTGGTGTCTGGGCGTCTGGCCATGCCCTGGGCCGTGCTAAGTGTGCATCATGCATTCCT--GTCTCCACAAAAACCTGATGAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556661 146 + 6255621 GAGTCTGCCAAGTGTGCCCCCTTCTCTCCGTCTGCGATGATGGCAGTGCC-CTTGCAGTAAGAACAGGTGGTGTCTGGGCGTCTGGCTGTGCCC-GGGCCGTGCTAAGTGTGCATCATGCATTCCT--GTCTCCACAAAAACCTGATGAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4604201 147 - 8658521 GAGTCTCCCAAGTGTGCCCCCTTCTCTCCGTCTGCGATGATGGCAGTGCC-CTTGCAGTAAGAACAGGTGGTGTCTGGGCATCTGGCCCTGCCCTGGGCCGTGCTAAGTGTGCATCATGCATTCCT--GTCTCCACAAAAACCTGATGAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114805427 139 + 124281992 GAGTCTCCCAAGTGTGCCCCCTTCTCTCCGTCAGCGATGATGGCAGTGCC-CCTGCGGTAAGAGCAGGTGGTATCTGAGCATCTGCCTGTGCCCCAGGGCATGCTAAGTGTGCATCTGGC-T---------TCCACACAAACCTGATGAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 450270 140 - 9212255 GAGTCCGCCAAGTGTGCCCCCTTCTCTCTGTCAGCGATGATGGCAGTGCC-CCTGTGGTAAGAGCAGGTGGTATCtgagcatctgcctgtgccccagggcatgctaagtgcgcatcatgcat---------tccacacaaacctgatgag i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2864910 139 + 4466143 GAGTCTTCCAAATGTGCCCCATTCTCTCTGTCAGCGATGATGGCAGTGCC-CCTGCGGTAAGAGCAGGTGGTATCTGAGCATCTGCCTGTGCCCCAGGGCATGCT-AGTGTGCATCATGCAT---------TCCACACAAACCTGATGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571520 140 + 5364348 GAGTCTCCCAAGTGTGCCCCCTTCTCTCCGTCAGCGGTGATGGCAGTGCC-CCTGAAGTAAGAGCAGGTGGTATCtgagcatctgcctgtgccccagggcatgctaagtgtgcatcatgcat---------tccacacaaacctgatgag i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 829959 150 - 1116856 GAATCTCTTGATTCCATCCACTTCTCCTTATCTATGGTAATAACATTAACAAAAATAGTTacaactaatagttactgagcaactgccctatgccaagactgttgtaagagctttctgtgtattgcttagtctccatgaaaacttgataag i dasNov3.JH568189 C 0 I 641 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4297452 63 + 7922563 I a score=840193.000000 s hg38.chr12_KI270834v1_alt 61132 87 + 119498 Aggccaggtgt-ggtgcctcctgcctgtgatcccagcactctgggaggccaaggagggaggatagcttgagcccaggagtttgaga-----cc s panTro5.chr12 127347191 87 + 137163284 Aggccaggtgt-ggtgcctcctgcctgtgatcccagcactctgggaggccaaggagggaggatagcttgagcccaggagtttgaga-----cc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698419 87 + 135337776 Aggccaggtgt-ggtgcctcctgcctgtgatcccagcactctgggaggccaaggagggaggatagcttgagcccaggagtttgaga-----cc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211399 86 - 8369578 Aggccaggtgt-ggtg-ctcctgcctgtgatcccagcactctgggaggccaaggagggaggatagcttgagcccaggagtttgaga-----cc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97859296 87 + 106955855 aggccgggtgt-ggtgcctcccgcctgtgatcccagcactctgggaggccaaggagggaggatagcttgagcccatgagtttgaca-----cc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984888 87 + 133663169 aggccgagtgt-ggtgcctcccgcctgtgatcccagcactctaggaggccaaggagggaggatggcttgagcccaggagtttgaga-----cc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128232279 87 + 137757926 Aggccgagtgt-ggtgcctcccgcctgtgatcccagcactctaggaggccaaggagggaggatggcttgagcccaggagtttgaga-----cc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10631933 87 - 16319837 aggccaagtgt-ggtgcctcccgcctgtgatcccagcactctaggaggccaaggagggaggatggcttgagcccaggagtttgaga-----cc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12254990 87 + 20526591 Aggccgagtgt-ggtgcctcccgcctgtgatcccagcactctaggaggccaaggagggaggatggcttgagcccaggagtttgaga-----cc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119227014 87 + 128539186 Aggccgagtgt-ggtgcctcctgcctgtgatcccagcactctgggaggccaaggagggaggatggcttgagcccaggagtttgaga-----cc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556807 87 + 6255621 Aggctgagtgt-ggtgcctcctgcctgtgatcccagcactctaggaggccaaggagggaggatggcttgagcccaggagtttgaga-----cc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4604348 87 - 8658521 Aggccgagtgt-ggtgcctcctgcctgtgatccgagcactctgggaggccaaggagggaggatggcttgagcccaggtgtttgaga-----cc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114805566 88 + 124281992 AGTctgggtgtggggggcccccccctgtgatccccaaactctgggaagccaaggaaagagaatggcatgagcccagaagtttgaaa-----ct i calJac3.chr9 C 0 I 18 s saiBol1.JH378194 450410 92 - 9212255 aggctgggcgt-ggtggctcccacctgggatccccacactctgggaggccaagggaggaggatggcatgagcccaggagtttgagacctgcct i saiBol1.JH378194 C 0 I 18 s cebCap1.NW_016107484v1 2865049 87 + 4466143 Aggctgggcgt-ggtggctcccacttgtgatccccgcactctgagaggccaaggaaggaggatggcatgagcccaggagtttgaga-----cc i cebCap1.NW_016107484v1 C 0 I 31 s aotNan1.NW_018491581v1 1571660 87 + 5364348 aggctgggctt-ggtggctcccacctgtgatccccgcactctgggaggccaaggaaggaggatggcatgagcccaggagtttgaga-----cc i aotNan1.NW_018491581v1 C 0 I 32 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 830109 641 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4297452 63 + 7922563 I a score=62130.000000 s hg38.chr12_KI270834v1_alt 61219 8 + 119498 ccgtcttt s panTro5.chr12 127347278 8 + 137163284 ccgtcttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698506 8 + 135337776 ccgtcttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211485 8 - 8369578 ccgtcttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97859383 8 + 106955855 ccgtcttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984975 8 + 133663169 ccgtcttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128232366 8 + 137757926 ccgtcttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10632020 8 - 16319837 ccgtcttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12255077 8 + 20526591 ccgtcttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119227101 8 + 128539186 ccgtcttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556894 8 + 6255621 ctgtcttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4604435 8 - 8658521 ccttcttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114805672 8 + 124281992 ccatcttt i calJac3.chr9 I 18 C 0 s saiBol1.JH378194 450520 8 - 9212255 ccatcttt i saiBol1.JH378194 I 18 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 830109 641 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4297452 63 + 7922563 I e aotNan1.NW_018491581v1 1571747 32 + 5364348 I e cebCap1.NW_016107484v1 2865136 31 + 4466143 I a score=3276.000000 s hg38.chr12_KI270834v1_alt 61227 1 + 119498 a s panTro5.chr12 127347286 1 + 137163284 a i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698514 1 + 135337776 a i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211493 1 - 8369578 a i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97859391 1 + 106955855 a i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984983 1 + 133663169 a i rheMac8.chr11 C 0 C 0 s chlSab2.chr11 119227109 1 + 128539186 a i chlSab2.chr11 C 0 I 6 s calJac3.chr9 114805680 1 + 124281992 a i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 450528 1 - 9212255 a i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 830109 641 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4297452 63 + 7922563 I e aotNan1.NW_018491581v1 1571747 32 + 5364348 I e cebCap1.NW_016107484v1 2865136 31 + 4466143 I e colAng1.NW_012116043v1 4604443 0 - 8658521 C e manLeu1.NW_012103587v1 556902 0 + 6255621 C e cerAty1.NW_012001186v1 12255085 0 + 20526591 C e macNem1.NW_012010578v1 10632028 0 - 16319837 C e macFas5.chr11 128232374 0 + 137757926 C a score=5348.000000 s hg38.chr12_KI270834v1_alt 61228 2 + 119498 ca s panTro5.chr12 127347287 2 + 137163284 ca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698515 2 + 135337776 ca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211494 2 - 8369578 ca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97859392 2 + 106955855 ca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984984 2 + 133663169 ca i rheMac8.chr11 C 0 I 4 s calJac3.chr9 114805681 2 + 124281992 ca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 450529 2 - 9212255 ca i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 830109 641 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4297452 63 + 7922563 I e aotNan1.NW_018491581v1 1571747 32 + 5364348 I e cebCap1.NW_016107484v1 2865136 31 + 4466143 I e colAng1.NW_012116043v1 4604443 0 - 8658521 C e manLeu1.NW_012103587v1 556902 0 + 6255621 C e chlSab2.chr11 119227110 6 + 128539186 I e cerAty1.NW_012001186v1 12255085 0 + 20526591 C e macNem1.NW_012010578v1 10632028 0 - 16319837 C e macFas5.chr11 128232374 0 + 137757926 C a score=1058.000000 s hg38.chr12_KI270834v1_alt 61230 3 + 119498 aat s panTro5.chr12 127347289 3 + 137163284 aat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698517 2 + 135337776 aa- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211496 3 - 8369578 aat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97859394 3 + 106955855 aat i nomLeu3.chr10 C 0 C 0 s calJac3.chr9 114805683 3 + 124281992 aaa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 450531 3 - 9212255 aac i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 830109 641 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4297452 63 + 7922563 I e aotNan1.NW_018491581v1 1571747 32 + 5364348 I e cebCap1.NW_016107484v1 2865136 31 + 4466143 I e colAng1.NW_012116043v1 4604443 0 - 8658521 C e manLeu1.NW_012103587v1 556902 0 + 6255621 C e chlSab2.chr11 119227110 6 + 128539186 I e cerAty1.NW_012001186v1 12255085 0 + 20526591 C e macNem1.NW_012010578v1 10632028 0 - 16319837 C e macFas5.chr11 128232374 0 + 137757926 C e rheMac8.chr11 123984986 4 + 133663169 I a score=3986.000000 s hg38.chr12_KI270834v1_alt 61233 9 + 119498 -ttttttttt s panTro5.chr12 127347292 9 + 137163284 -ttttttttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698519 9 + 135337776 -ttttttttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211499 9 - 8369578 -ttttttttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97859397 4 + 106955855 -tttt----- i nomLeu3.chr10 C 0 C 0 s calJac3.chr9 114805686 9 + 124281992 atatttttt- i calJac3.chr9 C 0 I 348 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 830109 641 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4297452 63 + 7922563 I e aotNan1.NW_018491581v1 1571747 32 + 5364348 I e cebCap1.NW_016107484v1 2865136 31 + 4466143 I e saiBol1.JH378194 450534 0 - 9212255 C e colAng1.NW_012116043v1 4604443 0 - 8658521 C e manLeu1.NW_012103587v1 556902 0 + 6255621 C e chlSab2.chr11 119227110 6 + 128539186 I e cerAty1.NW_012001186v1 12255085 0 + 20526591 C e macNem1.NW_012010578v1 10632028 0 - 16319837 C e macFas5.chr11 128232374 0 + 137757926 C e rheMac8.chr11 123984986 4 + 133663169 I a score=259582.000000 s hg38.chr12_KI270834v1_alt 61242 292 + 119498 cttttt-tttttttagat--agagtctcgttctgtcttccaggctggagtgcagtggcgtgatcttggctcactgcaagctccgcctcctgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcacccaccaccatgcccggctaattttttgtattttcagtagagacggggtttcaccgtgttagccaagatggtctcgatctcctgaccttgtgatccacccgcatcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggc s panTro5.chr12 127347301 293 + 137163284 ctttttctttttttagat--agagtctcgttctgtcttccaggctggagtgcagtggcgtgatctcggctcactgcaagctccgcctcctgggttcacactattctcctgcctcagcctcccgagtagctgggactacaggcacccaccaccatgcccggctaattttttgtattttcagtagagacggggtttcaccgtgttagccaagatggtctcgatctcctgaccttgtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698528 292 + 135337776 cttttt-tttttttagat--agagtctcgttctgtcttccaggctggagtgcagtggcgtgatctcggctcactgcaagctccgcctcctgggttcacactattctcctgcctcagcctcccgagtagctgggactacaggcacccaccaccatgcccggctaattttttgtattttcagtagagacggggtttcaccgtgttagccaagatggtctcgatctcctgaccttgtgatccacctgcctcggcctcccgaagtgctgggattacaggcgtgagccaccgtgcctggc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211508 295 - 8369578 ctttttttttttttagacagagagtctcgttctgtcttccaggctggagtgcagtggcatgatctcggctcactgcaagctccacctcctgggttcacaccattctcctgcctcagccttccgagtagctgggactacaggcacccaccaccatgcccggctaattttttgtattttcagtagagacggggtttcaccgtgttagccaagatggtctcgatctcctgacctcgtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcctggt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97859401 286 + 106955855 -------tttttttagac--ggagtctcgctctgtcttccaggctggagtgcagtggcgtgatctcggctcactgcaagctccgcctcctgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggtgcacgccaccacacccggctaattttttgtattttcagtagagacggggtttcaccatgttagccaagatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcctggc i nomLeu3.chr10 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 830109 641 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4297452 63 + 7922563 I e aotNan1.NW_018491581v1 1571747 32 + 5364348 I e cebCap1.NW_016107484v1 2865136 31 + 4466143 I e saiBol1.JH378194 450534 0 - 9212255 C e calJac3.chr9 114805695 348 + 124281992 I e colAng1.NW_012116043v1 4604443 0 - 8658521 C e manLeu1.NW_012103587v1 556902 0 + 6255621 C e chlSab2.chr11 119227110 6 + 128539186 I e cerAty1.NW_012001186v1 12255085 0 + 20526591 C e macNem1.NW_012010578v1 10632028 0 - 16319837 C e macFas5.chr11 128232374 0 + 137757926 C e rheMac8.chr11 123984986 4 + 133663169 I a score=5005.000000 s hg38.chr12_KI270834v1_alt 61534 1 + 119498 a s panTro5.chr12 127347594 1 + 137163284 a i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698820 1 + 135337776 a i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211803 1 - 8369578 a i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97859687 1 + 106955855 a i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128232374 1 + 137757926 a i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10632028 1 - 16319837 a i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12255085 1 + 20526591 a i cerAty1.NW_012001186v1 C 0 C 0 s manLeu1.NW_012103587v1 556902 1 + 6255621 a i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4604443 1 - 8658521 a i colAng1.NW_012116043v1 C 0 C 0 s cebCap1.NW_016107484v1 2865167 1 + 4466143 a i cebCap1.NW_016107484v1 I 31 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 830109 641 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4297452 63 + 7922563 I e aotNan1.NW_018491581v1 1571747 32 + 5364348 I e saiBol1.JH378194 450534 0 - 9212255 C e calJac3.chr9 114805695 348 + 124281992 I e chlSab2.chr11 119227110 6 + 128539186 I e rheMac8.chr11 123984986 4 + 133663169 I a score=30624.000000 s hg38.chr12_KI270834v1_alt 61535 5 + 119498 caaaa s panTro5.chr12 127347595 5 + 137163284 caaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698821 5 + 135337776 caaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211804 5 - 8369578 caaaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97859688 5 + 106955855 caaaa i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128232375 5 + 137757926 caaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10632029 5 - 16319837 caaaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12255086 5 + 20526591 caaaa i cerAty1.NW_012001186v1 C 0 C 0 s manLeu1.NW_012103587v1 556903 5 + 6255621 caaaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4604444 5 - 8658521 caaaa i colAng1.NW_012116043v1 C 0 C 0 s cebCap1.NW_016107484v1 2865168 5 + 4466143 caaaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571779 5 + 5364348 caaaa i aotNan1.NW_018491581v1 I 32 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 830109 641 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4297452 63 + 7922563 I e saiBol1.JH378194 450534 0 - 9212255 C e calJac3.chr9 114805695 348 + 124281992 I e chlSab2.chr11 119227110 6 + 128539186 I e rheMac8.chr11 123984986 4 + 133663169 I a score=2308.000000 s hg38.chr12_KI270834v1_alt 61540 1 + 119498 a s panTro5.chr12 127347600 1 + 137163284 a i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698826 1 + 135337776 a i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211809 1 - 8369578 a i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97859693 1 + 106955855 a i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128232380 1 + 137757926 g i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10632034 1 - 16319837 g i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12255091 1 + 20526591 g i cerAty1.NW_012001186v1 C 0 C 0 s manLeu1.NW_012103587v1 556908 1 + 6255621 g i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4604449 1 - 8658521 g i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 450534 1 - 9212255 a i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2865173 1 + 4466143 a i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571784 1 + 5364348 a i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 830109 641 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4297452 63 + 7922563 I e calJac3.chr9 114805695 348 + 124281992 I e chlSab2.chr11 119227110 6 + 128539186 I e rheMac8.chr11 123984986 4 + 133663169 I a score=85955.000000 s hg38.chr12_KI270834v1_alt 61541 11 + 119498 tatttttaaga s panTro5.chr12 127347601 11 + 137163284 tatttttaaga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698827 11 + 135337776 tatttttaaga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211810 11 - 8369578 tatttttaaga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97859694 11 + 106955855 tatttttaaaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123984990 11 + 133663169 tatttttaaaa i rheMac8.chr11 I 4 C 0 s macFas5.chr11 128232381 11 + 137757926 tatttttaaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10632035 11 - 16319837 tatttttaaaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12255092 11 + 20526591 tatttttaaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119227116 11 + 128539186 tatttttaaaa i chlSab2.chr11 I 6 C 0 s manLeu1.NW_012103587v1 556909 11 + 6255621 tatttttaaaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4604450 11 - 8658521 tatttttaaaa i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 450535 11 - 9212255 tattttttata i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2865174 11 + 4466143 tattttttata i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571785 11 + 5364348 tattttttata i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 830109 641 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4297452 63 + 7922563 I e calJac3.chr9 114805695 348 + 124281992 I a score=1737465.000000 s hg38.chr12_KI270834v1_alt 61552 186 + 119498 agttagccaggcatgatggcgtgagcctgtagttccagctactcaggagg----ggcaggaggattgcttgagcctgggaggttgaggctgcggtaagtcatgatcatgttatggcactccagcctgggcaacagagtgagaccctgtctccaaaaag-------aaaaa----------aaaacaaaaGCAACTG-AAAAacaatca s panTro5.chr12 127347612 189 + 137163284 agttagccaggcatgatggcatgagcctgtagttccagctactcaggagg----ggcaggaggattgcttgagcctgggaggttgaggctgcggtaagtcatgatcatgttattgcactccagcctgggcaacagagtgagaccctgtctccaaaaag----aaaaaaaa----------aaaacaaaaacaaCTG-AAAAacaatca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125698838 187 + 135337776 agttagccaggcatgatggcatgagcctgtagttccagctactcaggagg----ggcaggaggattgcttgagcctgggaggttgaggctgcggtaagtcatgatcatgttattgcactccagcctgggcaacagagtgagaccctgtctccaaaaag------aaaaaa----------aaaacaaaaacaaCTG-AAAAacaatca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8211821 187 - 8369578 agttagccaggcatgatggcatgagcctgtagttccagctactcaggagg----ggcaggaggattgcttgagcctgggaggttgaggctgtggtaagtcatgatcatgttattgcactccagcctgggcaacagagtgagaccctgtctccaaaaag-------aaaaa----------aaaacaaaaacaactgaaaaaacaatca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97859705 189 + 106955855 agttaggcaggcatgatggcatgagcctgtagttccagctactcaggaggctgagacaggaggattgcttgagcctgggaggttggggctgcggtaagccatgatcatgttattgcattccagcctgggcaacagagtgagaccctgtcttcaaaaag--------aaaa----------aaaacaaaaacaactg-aaaaacaatca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123985001 192 + 133663169 agttagccaggcatgatggcatgagcctgtagccccagctactcaggaggctgaggcaagaggattgcttgagcctgggaggttgaggctgtggtgagccatgatcgtgttattgcactccagcctgggcaacagagtgagaccctgtct-caaaaaacaaaacaaaaca----------aaaacaaaaacaactg-aaaaa----ca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128232392 192 + 137757926 agttagccaggcatgatggcatgagcctgtagccccagctactcaggaggctgaggcaagaggattgcttgagcctgggaggttgaggctgtggtgagccatgatcgtgttattgcactccagcctgggcaacagagtgagaccctgtct-caaaaaacaaaacaaaaca----------aaaacaaaaaCAACTG-AAAAA----CA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10632046 192 - 16319837 agttagccaggcatgatggcatgagcctgtagccccagctactcaggaggctgaggcaagaggattgcttgagcctgggaggttgaggctgtggtgagccatgatcatgttattgcactccagcctgggcaacagagtgagaccctgtct-caaaaaacaaaacaaaaca----------aaaacaaaaacaactg-aaaaa----ca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12255103 197 + 20526591 agttagccaggcatgatggcatgagcctgtagccccagctactcaggaggctgaggcaagaggattgcttgagcctgggaggttgaggctgtggtgagccatgatcatgttattgcactccagcctgggcaacagagtgagaccctgtctccaaaaaacaaaacaaaaca----------aaaacaaaaaCAACTG-AAAAACAATCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119227127 207 + 128539186 agttagccagccatgatggcatgagcctgtagccccagctactcaggaggctgaggcaagaggattgcttgagcctgggaggttgaggctgtggtgagccatgatcatgttattgcactccagcctgggcaacagagtgagaccctatctccaaaaaacaaaacagaacaaaacaaaaCCAAAAGAAAAACAACTG-AAAAACAATCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 556920 197 + 6255621 agttagccaggcatgatggcatgagcctgtagccccagctactcaggaggctgaggcaagaggattgcttgagcctgggaggttgaggctgtggtgagccatgatcatgttattgcactccagcctgggcaacagagtgagaccctgtctccaaaaaacaaaacaaaaca----------aaaacaaaaaCAACTG-AAAAACAATCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4604461 197 - 8658521 agttagccaggcatgatggcatgagcctgtagttccagctactcaggaggctgaggcaagaggattgcttgagcctgggaggttgaggctgtggtgagccatgatcatgttactgcactccagcctgggcaacagagtgagaccctgtctccaaaaaacaaaacaaaaca----------aaaacaaaaaCAACTG-AAAAACGATCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114806043 189 + 124281992 AGttagccaggcatgatggcctgagcctgtagtcccaactacttaggagactgaggcaggaggattgcttgagcctgggaggttgaggctacagtgagccatgatcatgctattgcacttcagcctggttgacagagtgagactctgtctccaaaaag----aaaaacac----------aaaacacaaa-aaCCa-aaaaa---tca i calJac3.chr9 I 348 C 0 s saiBol1.JH378194 450546 189 - 9212255 agttagccaggcatgatggcctgagcctgtagttccaactacttaggaggctgaggcagaaggattgcttgagcctgggaggttgaggctgcagtgagccatgaccatgctattgcacttcagcctggttggcagagtgagaccctgtctccaaaaag----aaaaaaac----------aaaacacaaa-cacca-aaaaa---tca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2865185 189 + 4466143 agttagccagggatgatggcctgagcctgtagtcccaactacttaggaggctgaggcaggaggattgcttgagcctgggaggttgaggctgcagtgagccatgaccatgctattgcacttcagcctggttggcagagtgagaccctgtctcccaaaag----aaaaaaac----------aaaacacaaa-aaCCa-aaaaa---tca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571796 188 + 5364348 agttagccaggcatgatggcctgagcctatagtcccaactacttaggaggctgaggcaggaggattgcttgagcctgggaggttgaggctgcagtgagccatgaccatgctattgcacttcagcctggttgacagagtgagaccctgtctccaagaag----aaaaa-ac----------aaaacacaaa-aacca-aaaaa---tca i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 830109 641 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4297452 63 + 7922563 I a score=4613763.000000 s hg38.chr12_KI270834v1_alt 61738 490 + 119498 aacctaatagggaaggtaccattaacatcctcatttcacagctgaggaaactgaggcCC--------Ctgta------------------------------------------ga-gggctgaatggcggccctcta-aaagacaca------tcctaaacccctggatcttgagaacgagacctttgtaagaaaaagagtctttgcagatgtaattaaattaaagatcttgaagtgccttcctggatttagggtgggtcctaaatccagtgacagctgtccttataagagaaggcagagggagatttgagacacagagaataaggtcccataaagattcccacaagtcacgggacacctggagccaccagaagccagaggaggcaaagaaggat---ttttcccttggagctgttggcaggttaccctgagaccttgatttca-ggcctccagaactgc-----------------aagagagtc-ggtgtctgtatttcttgtctgaagccactcgctttggggtaattagtcatggctgccccagaaatctactagagatgccacc s panTro5.chr12 127347801 490 + 137163284 aacctaatagggaaggtaccattaacatcctcatttcacagctgaggaaattgaggccc--------ctgta------------------------------------------ga-gggctgaacggtggccctcta-aaaggcaca------tcctaaacccctgggtcttgagaatgagacctttgtaagaaaaagagtctttgcagatgtaattaaattaaagatgttgaagtgccttcctggatttagggtgggtcctaaatccagtgacagctgtccttataagagaaggcagagggagatttgagacacagagaataaggtcccataaagattcccacaagtcacgggacacctggagccaccagaagccagaggaggcaaagaaggat---ttttcccttggagcttttggcaggttaccctgagaccttgatttca-ggcctccagaactgc-----------------aagagagtc-ggtgtctgtatttcttgtctgaagccactcgctttggggtaattagtcatggctgccccagaaatctactagagatgccacc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125699025 490 + 135337776 aacctaatagggaaggtaccattaacatcctcatttcacagctgaggaaattgaggccc--------ctgta------------------------------------------ga-gggctgaacggtggccctcta-aaagacaca------tcctaaacccctgggtcttgagaatgagacctttgtaagaaaaagagtctttgcagatgtaattaaattaaagatgttgaagtgccttcctggatttagggtgggtcctaaatccagtgacagctgtccttataagagaaggcagagggagatttgagacacagagaataaggtcccataaagattcccacaagtcacgggacacctggagccaccagaagccagaggaggcaaagaaggat---ttttcccttggagcttttggcaggttaccctgagaccttgatttca-ggcctccagaactgc-----------------aagagagtc-ggtgtctgtatttcttgtctgaagccactcgctttggggtaattagtcatggctgccccagaaatctactagagatgccacc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8212008 489 - 8369578 aacctaatagggaaggtaccattaacatcctcatttcacagctgaggaaactgaggccc--------ctgta------------------------------------------ga-gggctgaatggtgg-cctcta-aaagacaca------tcctaaacccctggatcttgagaatgagacctttgtaagaaaaagagtctttgcagatgtaattaaattaaagatcttgaagtgccttcctggatttagggtgggtcctaaatccagtgacagctgtccttataagagaaggcagagggagatttgagacacagagaataaggtcccataaagattcccacaagtcacgggacacctggagccaccagaagccagaggaggcaaagaaggat---ttttcccttggagcttttggcaggttaccctgagaccttgatttca-ggcctccagaactgc-----------------aagagagtc-ggtgtctgtatttcttgtgtgaagccactcgctttggggtaattaggcatggctgccccagaaatctactagagatgccacc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97859894 490 + 106955855 aacctaatagggaaggtaccattaacatcctcatttcacagctgaggaaactgaggccc--------Ctgta------------------------------------------ga-gggctgaatagtggcccccca-aaagacaca------tcctaaacccctggatcttgtgaatgagacctttgtacgaaaaagagtctttgcagatgtaattaaattaaagatcttgaagtgccttcctggatttagggtggatcctaaatccagtgacagctgtccttataagagaaggcagagggagatttgagacacagagaataaggtcccataaagattcccacaaaccacgggacacctggagccaccagaagccagaggaggcaaagaaggat---ttttcccttggagcttttggcaggttaccctgagaccttaatttca-ggcctccagaactgc-----------------aagagagtc-ggtgtctatatttcttgtcttaagccactcgctttggggtaattagtcatggctgccccagaaatctactagagatgccacc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123985193 515 + 133663169 aacctattagggaaggca-------------catgtcacagctgaggaaactgaggccc--------ctgtagagggctgaaTGTAGAAGGCTGAATGTAGAAGGCTGAAtgtcga-aggctgaatggtggccccccg-aaagacacatcctggtcctaagcccctggaacttgtgaataagacctttgtaagaaaaagagtctttgcagatgtaattaaattaaaggtcttgaaatgccttcctggatttagggtgggtcctaaatccagcgacagctgtccttgtaagagaaggcagagggagattgaagacacagagaataaggtcccataaagattcccacaagccacaggatacctggagccaccggaagccagaggaggcaaagaaggat---ttttcccctggagcctttggcaggttaccctgagaccttgatttca-ggcctccagaactgc-----------------aagacagtc-ggtgtctgtatttcttgtcttaagccactcgctttgtggtaattagtcatggctgcccca----------ggaGGTGCCACC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128232584 515 + 137757926 AACCTATTAGGGAAGGCA-------------CATGTCACAGCTGAGGAAACTGAGGCCC--------Ctgtagagggctgaatgtagaaggctgaatgtagaaggctgaatgtcga-aggctgaatggtggccccccg-aaagacacatcctggtcctaagcccctggaacttgtgaataagacctttgtaagaaaaagagtctttgcagatgtaattaaattaaaggtcttgaaatgccttcctggatttagggtgggtcctaaatccagcgacagctgtccttgtaagagaaggcagagggagattgaagacacagagaataaggtcccataaagattcccacaagccacaggatacctggagccaccggaagccagaggaggcaaagaaggat---ttttcccctggagcctttggcaggttaccctgagaccttgatttca-ggcctccagaactgc-----------------aagacagtc-ggtgtctgtatttcttgtcttaagccactcgctttgtggtaattagtcatggctgcccca----------ggaGGTGCCACC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10632238 515 - 16319837 aacctattagggaaggca-------------catgtcacagctgaggaaactgaggccc--------ctgtagagggctgaatgTAGAAGGCTGAATGTAGAAGGCTGAAtgtcga-aggctgaatggtggccccccg-aaagacacatcctggtcctaagcccctggaacttgtgaataagacctttgtaagaaaaagagtctttgcagatgtaattaaattaaaggtcttgaaatgccttcctggatttagggtgggtcctaaatccagcgacagctgtccttgtaagagaaggcagagggagattgaagacacagagaataaggtcccataaagattcccacaagccacaggatacctggagccaccggaagccagaggaggcaaagaaggat---ttttcccctggagcctttggcaggttaccctgagaccttgatttca-ggcctccagaactgc-----------------aagacagtc-ggtgtctgtatttcttgtcttaagccactggctttgtggtaattagtcatggctgcccca----------ggaGGTGCCACC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12255300 487 + 20526591 AACCTATTAGGGAAGGCA-------------catatcacagctgaggaaactgaggccc--------ctgtagagggctgaaTGTA----------------------------GA-Aggctgaatggtggccccctg-aaagacacatcctggtcctaagcccctggaacttgtgaataagacctttgtaagaaaaagagtctttgcagatgtaattaaattaaaggtcttgaaatgccttcctggatttagggtgggtcctaaatccagcgacagctgtccttgtaagagaaggcagagggagattgaagacacagagaataaggtcccgtaaagattcccacaagccacaggatacctggagccaccggaagccagaggaggcaaagaaggat---tttttccctggagcctttggcaggttaccctgaaaccttggtttca-ggcctccagaactgc-----------------aagacagtc-ggtgtctgtatttcttgtcttaagccactcgctttgtggtaattagtcatggctgcccca----------ggaGGTGCCACC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119227334 488 + 128539186 AACCTAATACGGAAGGTA-------------catatcacagctgaggaaactgaggccca-------CTGTAGAGGGCTGAATGTA----------------------------GA-Aggctgaatggtggcccccca-aaagatacatcctggtcctaaatccctggaacttgtgcatgagacctttttaagaaaaagagtctttgcagatgtaattaaattaaagatcttgaaatgccttcctggatttagggtgggtcctaaatccggtgacagctgtctttataagagaaggcagagggagattgaagacacagagaataaggtcccgtaaagattcccacaagccacaggacacctggagccaccggaagccagaggaggcaaagaaggat---ttttcccctggagcttttggcaggttaccctgagaccttgatttca-ggcctccagaactgc-----------------aagagagtc-ggtgtctgtatttcttgtcttaagccactcgctttgtggtgattagtcatggctgcccca----------ggaGGTGCCACC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 557117 482 + 6255621 AACCTATTAGGGAAGGCA-------------catatcacagctgaggaaactgaggccc--------ctgtagagggctgaatgta----------------------------ga-aggctgaatggtgg-cccccg-aaagacacatcctggtcctaagcccctggaacttgtgaataagacctttgtaagaaaaatagtctttgcagatgtaattaaattaaagatcttgaaatgccttcctggatttagggtgggtcctaaatccagcgacagctgtccttgtaagagaaggcagagggagattgaagacacagagaataaggtcccgtaaagattcccacaagccacaggatacctggagccaccggaagccagaggaggcaaagaa-------tttttccctggagcctttggcaggttaccctgagaccttggtttca-ggcctccagaactgc-----------------aagacagtc-ggtgtctgtatttcttgtcttaagccactcgctttgtggtaattagtcatggctgcccca----------ggaGGTGCCACC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4604658 496 - 8658521 AACCTAATAGGGAAGGTA-------------CATATCACAGCTGAGGAAACTGAGGCCCC-------CTGGAGAGGGCTGAAtgta----------------------------ga-aggctgaatggcag-ccccca-aaagacacatcctggtcctaaacccccggaacttgtgaacgagacctttttaagaaaa--agtcttcgcagatgtaattaaattaaagatcttgaaatgccttcctggatttagggtgggtcctaaatccagtgacagccgtccttataagagaaggcagagggagattgaagacacagagaataaggtcccgtaaagattcccacaagccacaggataccaggagccaccggaagccagaggaggcaaagaaggat---ttttctcctggagcttttggcaggttaccctgagaccttgatttca-ggcctccagaactgc-----------------aagagagtcgggtgtctgtatttcttgtcttaagccactcgctttgtggtaattagtcatggctgccccagaaatctaCTGGAGATGCCACT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114806232 500 + 124281992 aacctgatagggaaggtatcgttaacaacctcacatcacagctgaggaaactgaggctcag-ggCTGCtgta------------------------------------------ga-gggctgagtggtggctctgcg-aaagacacatcctagtcctcaacccctggaacttatgaataagaccttttaaag--aaagagtctttgcaggtgtaattaaattaaagatcttgaaatgacatcctggatttagggtgggtcctaaatcctgtggcagctgtccttataatagaaggcagagggggatttgtgacacagaggaaaatgtcccgtaaagattctcacaagccatgggacacctggaaccactggaagccagaagaggcaaggaaggg----tttacccccggagcttttggcaggttaccccgagaccttgatctcagggcctccagaacggc-----------------aagagagta-ggtgtctgtatgtcttgtcttaagccactcgc-ttgtggtaattagtcatggttgccccagaaaactactaGAGATGCCACC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 450735 500 - 9212255 aacctgatagggaaggtatcattaacaacctcatgtcacagctgaggaaactgaggctcag-ggctgctgta------------------------------------------ga-gggctgagcggtggccctaca-aaagacgcatcctggtcctcaacccctggaacttgtgaatgagaccttttaaag--aaagagtctttgcaggtgtaattaaattaaagatcttgaaatgacatcctggttttaaggtgggtcctaaatcctgtcacagctgtccttgtaatagaaggcagagggggatttgagacacagagaagaatgtcccgtaaagattctcacaagccatgggactcctggaaccactggaagccagaagaggcaaagaacga----tttccccccagagcttctggcaggttaccccgagacgttgatctcagggcctccagaacagc-----------------aagagagta-gttgtctgtatgtcttgtcttaagccattcgc-ttgtggtaattagtcatggtcgccccagaaaactactagagatgccacc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2865374 497 + 4466143 aacccgatagggagggtatcattaactacctcacgtcacagctgaggaaactgaggctcag-ggCTGCTGTA------------------------------------------GAGgggctgagcggtggccctgca-aaagacacctcctggtcctcaacccctggaacttgtgaatgagacctttt------aaagagtctttgcaggtgtaattaaattaaagatattgaaatgacatcctggttttagggtggttcctaaatcctgtgacagctgtccttataatagaaggcagagcgggatttgagacacagagaaaaatgtcccctaaagattctcacaagccatgggactcctggaaccactggaagccagaagaggcaaagaagga----ttcccccccggagctttgggcaggttaccccgagaccttgatctcagggcctccagagcagc-----------------aagagacta-ggtgtctgtatgtcttgtcttaagtcactcgc-ttgtggtaattagtcatggttgccccagaaaactGCTAGAGATGCCACC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1571984 499 + 5364348 gacctgatagggaaggtatcattaacaacctcacgtcacagctgaggaaactgaggctcag-ggctgctgta------------------------------------------ga-gggctgagcagtggccctgca-aaagacacatcctggtcctcaacccctggaacttgtgaatgagaccttttaaag--aaagagtctttgcaggtgtaattaaattaaagatcttgaaatgacatcctggatttagggtgggtcctaaatcctgtgacagctctccttataatagaaggcagagggggatttgagacacagagaaaaatgtcccgtaaagattctcacaagccacgggacacctggaaccactggaagccag-agaggcaaagaagga----tttccccccggagcttttggcaggttaccccgagaccttgatctcagggcctccagaacggc-----------------aagagagta-ggtgtctgtatgtcttgtcttaagccagttgc-ttgtggtaattagtcatggttgccccagaaaactactagagatgccacc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4297515 485 + 7922563 agtctgatgaggaa-gcaccattgtcatcctcactttgtagctgaggaaacagaggcacagagGCTGCTGTA------------------------------------------GA-GAACCgaatggtggctcttcacaaagatgcattctggccctaaacccctagaacctgggaacaggaccttattaagaaaaagggtctttgtggatgtaattcagtcaaggatc-tgaaatggcatcctggatctaaggtaggtcctaaatccagtaacagtgatccttagaaaagaagggagagggagatttgca--acagagaat-gggctgtgtaaag--------aagcaaccagagattt-------ccacaagccaaggaagtcaaggaaggatcaatcctcccctccagcctttgtcagggatgtcaggtaccttgacctca-gtcctccagaactgtgaactttatgtttctaaaagaaag-a-aatgtctttctttattgttgtaagttacccagtttgtggtgattaattatggt-------------------agATAATACC i otoGar3.GL873618 I 63 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 830109 641 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I a score=3636011.000000 s hg38.chr12_KI270834v1_alt 62228 342 + 119498 taccttatccaagggcaccttgctgggaaggcactgaggtgagactcgaacccaggatttttagcatcttagccacgctcacaaccactttaccgtgttgtTATCTTGTCTA-CCCTGGGGCCCTGCAAAGA-TCCGTGCTGACTTCGTCTGGCCTAATGGCTTACAGGGACCTCCTTTCTTTCCCAGGGACCTATTTCATCGATTGCTTGTTTGTTTCAGCACCTGACCATATTCATTATTGTATTGCTGTGTTATTCATTGAGCCCCAGCCtcccagcatt-tactat--aaaaaatttctaacataacagtgaggctgaaagaattttttctgtgaacatctgc s panTro5.chr12 127348291 342 + 137163284 taccttatccaagggcaccttgctgggaaggcactgaggtgggactcgaacccaggatttttagcatcttagccacgctcacaaccactttaccgtgttgtTATCTTATCTA-CCCTGGGGCCCTGCAAAGA-TCCGTGCTGACTTTGTCTGGCCTAATGGCTTACAGGGACCTCCTTTCTTTCCCAGGGACCTATTTCATCGATTGCTTGTTTGTTTCAGCACCTGACCATATTCATTATTGTATTGCTGTGTTATTCATTGAGCCCCAGCCtcccagcatt-tactat--aaaaaatttctaacataacagtgaggctgaaagaattttttctgtgaacatctgc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125699515 342 + 135337776 taccttatccaagggcaccttgctgggaaggcactgaggtgggactcgaacccaggatttttagcatcttagccacgctcacaaccactttaccgtgttgtTATCTTGTCTA-CCCTGGGGCCCTGCAAAGA-TCTGTGCTGACTTTGTCTGGCCTAATGGCTTACAGGGACCTCCTTTCTTTCCCAGGGACCTATTTCATCGATTGCTTGTTTGTTTCAGCACCTGACCATATTCATTATTGTATTGCTGTGTTATTCATTGAGCCCCAGCCtcccagcatt-tactat--aaaaaatttctaacataacagtgaggctgaaagaattttttctgtgaacatctgc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8212497 342 - 8369578 taccttatccaagggcaccttgctgggaaggcactgaggcgagactggaacccaggatttttagcatcttagccacgctcacaaccactttaccgtgttgtTATCTTGTCTA-CCCTGGGGCCCTGCAAAGA-TCCATGCTGACTTTGTCTGGCCTAATGGCTTACAGGGACCTCCTTTCTTTCCCAGGGACCTATTTCATCGATTGCTTGTTTGTTTCAGCACCTGACCATATTCATTATTGTATTGCTGTGTTATTCATTGAGCCCCAGCCtcccagcatt-tactat--aaaaaatttctaacataacagtgaggctgaaagaattttttctgtgaacatctgc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97860384 338 + 106955855 taccttatccaagggcaccttgctgggaaggcactgaggtgagactcgaacccaggatttttagcatcttagccacgctcacaaccactttaccgtgttgtTGTCTTGTCTA-CCCTGGGGCCCTGCAAAGA-TCCATGCTGACTTTGCCTGGCCTAATGGCTTACAGGCACCTCCTTTCTTTCCCAGGGACCTATTTCATCGATTGCTTGTTTGTTTCAGCACCTGACCATATTCATTATTGTATTGCTGTGTTATTCATTGAGCCCCAGCCtcccagcatt-tactat--aaaaaatttctaacataacagtgaggct----gaattttttctgtgaacatctgc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123985708 343 + 133663169 taccttatccaagggcaccttgctgggaaggcactgaggtgggacttgaacacaggacttttaacatcttagccgcgctcacaacccctttactgtgttgtTATCTTGTCTG-CCCTGGGGCCCTGCAAAGA-TCCCTGCTGACTTTGCCTGGCCTAATGGCTTCCAGGGACCTCTTTTCTTTCCCAGGGACCTATTTCATTGATTGCTTATTTGTTTCAGGACCTGACCACATTCATTATTATATTGCCTTGTTATTCATCGAGCCCTAGCCtcccagcgtt-tactat-aaaaaaatctctaacataacagtgaggctgaacgaattttttctgtgaacatctgc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128233099 343 + 137757926 taccttatccaagggcaccttgctgggaaggcactgaggtgggacttgaacacaggacttttaacatcttagccgcgctcacaacccctttactgtgttgtTATCTTGTCTG-CCCTGGGGCCCTGCAAAGA-TCCCTGCTGACTTTGCCTGGCCTAATGGCTTCCAGGGACCTCTTTTCTTTCCCAGGGACCTATTTCATTGATTGCTTATTTGTTTCAGGACCTGACCACATTCATTATTATATTGCCTTGTTATTCATCGAGCCCTAGCCtcccagcgtt-tactat-aaaaaaatctctaacataacagtgaggctgaacgaattttttctgtgaacatctgc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10632753 344 - 16319837 taccttatccaagggcaccttgctgggaaggcactgaggtgggacttgaacacaggacttttaacatcttagccgcgctcacaacccctttactgtgttgtTATCTTGTCTG-CCCTGGGGCCCTGCAAAGA-TCCCTGCTGACTTTGCCTGGCCTAATGGCTTCCAGGGACCTCTTTTCTTTCCCAGGGACCTATTTCATTGATTGCTTATTTGTTTCAGGACCTGACCACATTCATTATTATATTGCCTTGTTATTCATCGAGCCCTAGCCtcccagcgtt-tactataaaaaaaatctctaacataacagtgaggctgaacgaattttttctgtgaacatctgc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12255787 344 + 20526591 TACcttatccaagggcaccttgctgggaaggcactgaggtgggacttgaacacaggacttttaacatcttagccgcgctcACAACCCCTTTACCGTGTTGTTATCTTGTCTG-CCCTGGGGCCCGGCAAAGA-TCCCTGCTGACTTTGCCTGGCCTAATGGCTTCCAGGGACCTCTTTTCTTTCCCAGGGACCTATTTCATTGATTGCTTGTTTGTTTCAGGACCTGACCATATTCATTATTATATTGCCGTGTTATTCATTGAGCCCTAGCCtcccagcgtt-tactataaaaaaaatctctaacataacagtgaggctgaacgaattttttctgtgaacatctgc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119227822 343 + 128539186 taccttatccaagggcacctgcctgggaaggcactgaggtgggacttgaacacaggacttttaacatcttagccgcgctcacaaccactttactgtgttgtTATCTTGTCTG-CCCTAGAGCCCTGCAAAGA-TCCCTGCTGACTTTGCCTGGCCTAATGGCTTCCAGGGACCTCTTTTCTTTCCCAGGGACCTATTTCATTGATTGCTTGTTTGTTTCAGGACCTGACCATATTCATTATTATATTGCCGTGTTATTCATTGAGCCGTAGCCtcccagcgtt-tactat-aaaaaaatctctaacataacagtgaggctgaacgaattttttctgtgaacatctgc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 557599 343 + 6255621 taccttatccaagggcaccttgctgggaaggcactgaggtgggacttgaacacaggacttttaacatcttagccgcgctcacaacccctttactgtgttgtTATCTTGTCTG-CCCTGGGGCCCGGCAAAGA-TCCCTGCTGACTTTGCCTGGCCTAATGGCTTCCAGGGACCTCTTTTCTTTCCCAGGGACCTATTTCATGGATTGCTTGTTTGTTTCAGGACCTGACCATATTCATTATTATATTGCCGTGTTATTCATTGAGCCCTAGCCtcccagcgtt-tactat-aaaaaaatctctaacataacagtgaggctgaacgaattttttctgtgaacatctgc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4605154 331 - 8658521 TACcttatccaagggcaccttgctgggaaggcactgaggcgggacttgaacacaggacttttaacatcttagccgagct---------tttactgTGTTGTTATCTTATCTG-CCCTGGGGCCCTGCAAAGA-TCCCTGCTGAC--TGCCTGGCCTAATGGCTTACAGGGACCTCTTTTCTTTCCCAGGGACCTATTTCATTGGTTGCTTGTTTGGTTCAGGACCTGACCACATTCATTATTATATTGCCGTGTTATTCACGGAGCCCTAGCCtcccagcgtt-tactat--aaaatatctctgacataacagtgaggctgaacgaactatttctgtgaacatctgc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114806732 342 + 124281992 TCCcttatccaagggcaccttgctgggaaggcactgaggggggactggaacccaggacttttagcatcttagccaccctctcaaccacgttactgtgttgtGATCCTGTCTG-CCCTGGGGCCCTGCTAAGG-TCCATGCTGACTTTGTCTGGCCTAATGGCTTACAGGGACCTCTTGTTTTTCCCAGGGATCTATTTCACTGATTGCTTGTTTGTTTTAGCAACTGACCATATTCATTATTGTATTGCTGTGTTATTCATTGAGCCCCAGCCCcccaacatt-tacgat--aaaacatttctaacacgacaatgaggctgaaagaatcttttctgtgaacatctgc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 451235 336 - 9212255 tcccttattcaagggcaccttgctgggaaggcactcagggggtactcgaacccacgacttctagcatcttagccacactctcgaccatgttacagtgtTGTGATCCTGTCTG-CCCTGGGGCCCTGCTAAGG-TCCATGCCA-----GACTGGCCTAATGGCATACAGGGACCTCTTG-TTTTCCTGGGGATCTATTTCATTAATTGCTTGTTTGTTTCAGCACCTGACCATATTCATTATTGTATTGCCGTGTTATTCATTGAGCCCCAGCGCCGcaacatt-tacgat--aaaacatttctaacatgacagtgaggctgaaagaatcttttccgtgaacacgtgc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2865871 342 + 4466143 TCCcttatccaagggcaccttgctgggaaggcactgagggaggactcgaacccaggacttctaacatcttagccacactctcaaccatgttaccgtgttgtGATCCTGTCTG-CCCTGGGGCCCTGCTAAGG-TCCATGCCGAGTTTGTCTGGCCTAATGGCTTACAGGGACCTCTTGCTTTTCCTGGGGATCTATTTCATTGATTGCTTGTTTGTTTTAGTACCTGACCATATTCATTATTGTATTGCCGTGTTATTCATTGAGCCCCAGCCCcctaacatt-tacgat--aaaacatttctaacacgacagtgaggctgaaagaatcttttctgtgaacacctgc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1572483 342 + 5364348 tcccttatccaagggcaccttgctgggaaggcactgaggggggactcgaacccaggactcctagcatcttagccacactctcaaccacgttaccgtgttgtGATCCTGTCTG-CCCTGGGGCCCTGCTAAGG-TCCATGCTGACTTAGTCTGGCCTAATGGCTTACAGGGACCTCTTGTTTTTCCCTGGGACCTATTTCATTGATTGATTGTTTGTTTTAGCACCTGACCATATTCATTATTGTATTGCCTTGTTATTCATTGAGCCCCAGCCCcccaacatt-tacgat--aaaacatttctaacatgacagtgaggctgaaagaatcttttctgtgaacgtctgc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4298000 317 + 7922563 TAGCATGTCCTAGGGCTCCCTGCTGGGGA-GCACTGAGGTGGTAC----------------CAGTGTCATATCCATGTTCACAACCACGTTGTGCTATCAAAATCCCTTCTG-CTGTGGAA---GGGAAAGACTCCATGCTGACTTTGCTTGACCAAGTGGCAGATGGCAACTTCTTTCTTTTCCTAGAGACCTGTTGCATTTATTGCTCATTCATTTTGGTACCTGGCCGTATTTCTTATTGTATTGCTGTATTGTTCATTGAGTTTT--CTGAGTAACACt-tattat--aaaaaattgcaagtataacagtaagattgagaaaattgat--agtgaacccct-- i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 830750 328 - 1116856 taatttgcccaagagcactcagatgggaaggagccaaggggagatgagaatccaggagcttctgtgtcattgtcacattcacaaccactctgctgtatcgtAATCTTGTCCATCTTTGGGGCCCTGCTAAAG-TTCATGTGGCCTTTGCTTGATCAAATGACTTATAGGGACTCACTTCCTTTTCCATGGGTCCATTATGTTTATGG-------------GCACTTGACTCTATTTGTTACTGTGTTACGCTGTTATTCACTGAatttttgc--cccagcattatattgt--gaaaaatttcaaatataacagttggactgaatgaattttacat-tgaacgcctgc i dasNov3.JH568189 I 641 I 934 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e canFam3.chr26 33152509 74 - 38964690 I a score=2515433.000000 s hg38.chr12_KI270834v1_alt 62570 263 + 119498 cggcatgccatctagatccctcctttctcgccttgctgcactt-gctctgccatgcgtgtaaacagctt----tccctccctccctgcttccgcccttctcgtttttagatgcgtttcagagtcaattgcaacatcactgctctcccc-gctaaatgcttctgcgtgccactatctagagttcaagttttgttta--gtgttttc-ttttgatgtaaaatttacatacagggaaacgcacaacattttaagtgtatatttgctgcattttga s panTro5.chr12 127348633 263 + 137163284 cggcatgccatctagatccttccattctcgccttgctgcactt-gctctgccacgcatgtaaacagctt----tccctccctccctgcttccgcccttctcgtttttagatgcatttcagagtcaattgcaacatcactgctctcccc-gctaaatgcttctgcgtgccactatctagagttcaagttttgttta--gtgttttc-ttttgatgtaaaatttatgtacagggaaatgcacaacattttaagtgtatgtttgctgcattttga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125699857 263 + 135337776 cggcatgccatctagatccctccattctcgccttgctgcactt-gctctgccacgcatgtaaacagctt----tccctccctccctgcttccgcccctctcgtttttagatgcgtttcagagtcaattgcaacatcactgctctcccc-gctaaatgcttctgcgtgccactatctagagttcaagttttgttta--gtgttttc-ttttgatgtaaaatttatgtacagggaaatgcacaacattttaagtgtatgtttgctgcattttga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8212839 264 - 8369578 tggcatgccatctagatccctccattctcgccttgctgcactt-gctctgtcacgcgtgtaaacagctt----tccctccctccctgcttccacccttctcgtttttagatgcgtttcagagtcaattgcaacatcactgctctcccctgctaaatgcttctgcgtgccactatctagagttcaagttttgttta--gtgttttc-ttttgatgtaaaatttatgtacagggaaatgcacaacattttaagtgtatatttgctgcattttga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97860722 264 + 106955855 tggcatgccatctagatccctccattcacgtcttgctgcacttggctttgtcacgcatgtaaacagctt----tccctccctccctgcttccacccttctcgtttttagatgcgtttcaaagtcaattgcaatgtcactgctctcccc-gctaaatgcttctgcgtgccactatctagagttcaagttttgttta--gtgttttc-ttttcatgtaaaatttatgtacagggaaatgcacaacattttaagtgtatatttgctgcattttga i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123986051 257 + 133663169 cggcatgccatctagatccctccattcacgtcttactgcactt-gctttgtcacacatgtaaacagctt--------tccttccctgtttctacccatctcatttttagatgc-tttcaaagtcaattgc-atgtcactactctcccc-gctaaatgcttctgtgtggcactaggtagagttcaagttttgttta--gtgttttc-ttttgatgtaaaaattatgtacagggaaatgcacaacattttaagtgtatatttgctgcattttga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128233442 257 + 137757926 cggcatgccatctagatccctccattcacgtcttactgcactt-gctttgtcacacatgtaaacagctt--------tccttccctgtttctacccatctcatttttagatgc-tttcaaagtcaattgc-atgtcactactctcccc-gctaaatgcttctgtgtggcactaggtagagttcaagttttgttta--gtgttttc-ttttgatgtaaaaattatgtacagggaaatgcacaacattttaagtgtatatttgctgcattttga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10633097 257 - 16319837 cggcatgccatctagatccctccattcacgtcttactgcactt-gctttgttacacatgtaaacagctt--------tccttccctgtttctacccatctcatttttagatgc-tttcaaagtcaattgc-atgtcactactctcccc-gctaaatgcttctgtgtggcactatgtagagttcaagttttgttta--gtgttttc-ttttgatgtaaaaattatgtacagggaaatgcacaacattttaagtgtatatttgctgcattttga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12256131 257 + 20526591 cggcatgccatctagatccctccattcacgtcttactgcactt-gctttgtcacacatgtaaacagctt--------tccttccctgtttccacccatctcatttttagatgc-tttcaaagtcaattgc-atgtcactactctcccc-gctaaatgcttctgtgtggcactatgtagagttcaagttttgttta--gtgttttc-ttttgatgtaaaaattatgtacagggaaatgcacaacattttaagtgtatatttgctgcattttga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119228165 257 + 128539186 cggcatgccatctagatccctccattcacgtcttactgcactt-gctttgtcacacatgtaaacagctt--------tccttccctgtttccacccatctcatttttagatgc-tttcaaagtcaattgc-atgtcactactctcccc-gctaaatgcttctgtgtggcactatatagagttcaagttttgttta--gtgttttc-ttttgatgtaaaaattatgtacagggaaatgcacaacattttaagtgtatatttgctgcattttga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 557942 257 + 6255621 cggcatgccatctagatccctccattcacgtcttactgcactt-gctttgtcacacatgtaaacagctt--------tccttccctgtttccacccatctcatttttagatgc-tttcaaagtcaattgc-atgtcactactctcccc-gctaaatgcttctgtgtggcactatgtagagttcaagttttgttta--gtgttttc-ttttgatgtaaaaattatgtacagggaaatgcacaacattttaagtgtatatttgctgcattttga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4605485 257 - 8658521 cggcacgccgtctggatccctccattcacgtcttactgcactt-gctctgtcacacatgtaaacagctt--------tccttccctgcttccacccatctcgtttttagatgc-tttcaaagtcaattgc-acgtcactgctctcccc-gctaaatgcttctgtgtggcactatgtagagttcaagttttgttta--gtgttttc-ttttgatgtaaaaattatgtacagggaaatgcacaacattttaagtgtatatttgctgcattttga i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114807074 260 + 124281992 cggcatgccgtctagatccctccgttcacgtcttactgcactt-gctttatcacgcacctaaacacctttccctcccgcccttcctgcttcaacccatctcatttttagatgcatttca-agtcaattgcaacgtcactgctctcccc-gctaaatgtgtctgcatgccactatctagagttcaagttttg--tc---tgttttc-ttttgatgtaaaatttatgtatgtggaaatgcacac---tttaagtgtatatttgctgcattttga i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 451571 263 - 9212255 tggcatgctgtctagacccctctgttcacgtcttactgcactt-gctttgtcacgcacataaacaccttgccctcccgccctccctgcttcaacccatctcatttttagatgcgtttca-agtcaattgcaacgtcactgctctcccc-gctaaatgtgtctgcatgccactatctagagttcaagttttgtttc---tgttttc-ttttgatgtaaaatttatgtacagggaaatgcacac--ttttaagtgtatatttgctgcattttga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2866213 261 + 4466143 tggcatgctgtctagatccctccgttcacatcttactgcactt-gctttgtcacgcatgtaaacacctttccctcccaccctccctgcttcaacccatctca-ttttagatgcgtttca-agtcaattgcaacatcactgctctcccc-gctaaatgtgtctgcatgccactctctagagttcaagttttgtttc---tgttttc-ttttgatgtaaaatttatgtacagggaaatgcacac---tttaagtgtatatttgctgcattttga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1572825 262 + 5364348 cggcatgccgtccagatccccccgttcacgtcttactgcactt-gctttatcacgcacgtaaacacctttccctcccactctccttgcttcaacccatctcatttttagatgcgtttca-agtcaattgcaacgtcactgctctcccc-gctaaacgtgtctgcatgccactatctagggttcaagttttgtttc---tgttttc-ttttgatgtaaaatttatgtacaggggaatgcacac---tttaagtgtctatttgctgcattttga i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4298317 252 + 7922563 --tcataccacctagaggccaccatcc-tattttccttt-ctt-gctttatcatatatgtaaagagctc--------tccctccctctcttctcacatctcattttttgatgcctttcagagtcaacggcaacatcagcacacttgcc-tcttaatgcc------tgtcattgtccagagtccaatttttgtttgcagtattttagttttgatgtaaaatttaaacacaatgcaaggcatacattttaaagtatgtatttgctgtgttttga i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 831078 934 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I a score=539367.000000 s hg38.chr12_KI270834v1_alt 62833 47 + 119498 tcattgcgtTTTAAGTTGCGTCTGTTTCAGTGGGTTGTCGGCTCCTT s panTro5.chr12 127348896 47 + 137163284 tcattgcgtTTTAAGTCGCGTCTGTTTCAGTGGGTTGTCGGCTCCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125700120 47 + 135337776 tcattgcgtTTTAAGTCGCGTCTGTTTCAGTGGGTTGTCGGCTCCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8213103 47 - 8369578 tcattgcatTTTAAGTCGCGTCTGTTTCAGTGGGTTGTCGGCTCCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97860986 47 + 106955855 tcattgcgtTTTAAGTCGCGTCTGTTTCAATGGGTGGTCGGCTCCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123986308 47 + 133663169 TCattgtgttttaagtcacttccgtttcagtgggttgtcggctcctt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128233699 47 + 137757926 TCATTGTGTTTTAAGTCACTTCCGTTTCAGTGGGTTGTCGGCTCCTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10633354 47 - 16319837 TCattgtgttttaagtcacttccgtttcagtgggttgtcggctcctt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12256388 47 + 20526591 tcattgcgtTTTAAGTCGCTTCCGTTTCAGTGGGTTGCCGGCTCCTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119228422 47 + 128539186 tcattgcgtTTTAAGTCGCTTCCGTttcagtgggttgtcggctcctt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 558199 47 + 6255621 tcattgcgtTTTAAGTCGCTTCCGTttcagtggattgccggctcctt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4605742 47 - 8658521 tcattacatTTTAAGTTGCTTCCGTTTCAATGGGTTGTCGGCTCCTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114807334 47 + 124281992 TCATTGGGTTTTAAATTGCAtctgtttcagtgggttgtcagctcttt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 451834 47 - 9212255 TCATTGGGTTTTAAGTTGCgtctgtttcagtgggttgtcagctcttt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2866474 47 + 4466143 TCGTTGGGTTTTAAGTTGCGTCTGTTTCAGTGGGTTGTCAGCTCTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1573087 47 + 5364348 TCATTGGGTtttaagttgtgtctgtttcagtgggttgtcagctcttt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4298569 47 + 7922563 TCATTGAGTTTTAAGTCATGTCTGTTTTGATGGGTCATCAGCttttt i otoGar3.GL873618 C 0 I 170 s dasNov3.JH568189 832012 46 - 1116856 TCATTGAGTTTTAAATCGTGTCTGTTCTGTTGGGTTGTCAGCTCTT- i dasNov3.JH568189 I 934 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e canFam3.chr26 33152509 74 - 38964690 I a score=85592.000000 s hg38.chr12_KI270834v1_alt 62880 7 + 119498 GAGAGGG s panTro5.chr12 127348943 7 + 137163284 GAGAGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125700167 7 + 135337776 GAGAGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8213150 7 - 8369578 GAGAGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97861033 7 + 106955855 GAGAGGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123986355 7 + 133663169 gagagga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128233746 7 + 137757926 GAGAGGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10633401 7 - 16319837 gagagga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12256435 7 + 20526591 GAGAGGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119228469 7 + 128539186 gagagga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 558246 7 + 6255621 gagagga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4605789 7 - 8658521 GAGAGGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114807381 7 + 124281992 gagagga i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 451881 7 - 9212255 gagagga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2866521 7 + 4466143 GAGAGGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1573134 7 + 5364348 gagagga i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4298786 7 + 7922563 gagatgg i otoGar3.GL873618 I 170 I 112 s dasNov3.JH568189 832058 7 - 1116856 GAGGGCA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e canFam3.chr26 33152509 74 - 38964690 I a score=3893918.000000 s hg38.chr12_KI270834v1_alt 62887 397 + 119498 GGGATCGGGT-CATCCACCTGGATTTATTCCACAGTGTTtattccagacact--------------gggtttggtagggaataagatggtcatgacctctgccctccttggagca-tacatttcagcgtgtgagt---------------------ggactggttaacgacaacaacaac--tacacaaagagatacagcaattgcagattgtg--gtaagtgccgtgagtgcaaagggga-gttgctgtgagagagagtgtgggcaggag-catctcagggcagacagggaaggcgtcac-tgtag--agacttttcagctgaggcctgagagatgCTGTGTGATCACACtccctatggctgctgtagcaaatttcccc------------------aaacagcacgg------------atttattcccctatgcgcctggaggtcagaaatcagaaaagggtcttaaggg s panTro5.chr12 127348950 397 + 137163284 GGGATCGGGT-CATCCACCTGGATTTATTCCACAGTGTTtattccagacact--------------gggtttggtagggaataagatggtcatgacctctgccctccttggagca-tacatttcagcgtgtgagt---------------------ggactggttaacgacaacaacaaa--tacacgaagagatacagtaattgcagattgtg--gtaagtgccgtgagtgcaaagggga-ggtgctgtgagagagagtgtgggcaggag-catctcagggcagacagggaaggcgtcac-tgtag--agacttttcagctgaggcctgagagaTGCTGTATGATCACACtccctatggctgctgtagcaaatttcccc------------------aaacagcacgg------------atttattcccctatgcgcctggaggtcagaaatcagaaaagggtcttaaggg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125700174 398 + 135337776 GGGATCGGGTCCATCCACCTGGATTTATTCCACAGTGTTtattccagacact--------------gggtttggtagggaataagatggtcatgacctctgccctccttggagca-tacatttcagcgtgtgagt---------------------ggactggttaacgacaacaacaaa--tacacgaagagatacagcaattgcagattgtg--gtaagtgccgtgagtgcaaagggga-ggtgctgtgagagagagtgtgggcaggag-catctcagggcagacagggaaggcgtcac-tgtag--agacttttcagctgaggcctgagagatgCTGTATGATCACACtccctatggctgctgtagcaaatttcccc------------------aaacagcacgg------------atttattcccctatgcgcctggaggtcagaaatcagaaaagggtcttaaggg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8213157 397 - 8369578 AGGATCGGGT-CATCCACCTGGATTTATTCCACAGTGTTtattccagacact--------------gggtttggtagggaataagatggtcatgacctctgccctccttggagca-tacatttcagcgtgtgagt---------------------agactggttaacgacaacaacaaa--tacacaaagagatacagcaattgcagattgtg--gtaagtgccgtgagtgcaaagggga-ggtgctgtgagagagagtgtgggcaggag-catctcagggcagacagggaaggcgtcac-tgtag--agacttttcagctgaggcctgagagaTGCTGTATGATCACACtccctatggctgctgtagcaaatttcccc------------------aaacagcacag------------atttattcgcctatgcgcctggaggtcagaaatcggaaaagggtcttaaggg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97861040 396 + 106955855 GGGATCGGGT-CATCCACCTGGATTTATTCCACAGTGTTtattccagacact--------------gggtttggtagggaataaggtggtcatgacctctgccctccttggagca-tacatttcagcgtgtgagt---------------------gggctggttaacgacaacaacaaa--tacac--agagatacagcaattgcagattgtg--gtaagagccatgagtgcaaagggga-ggtgctgtgagagagagtgtgggcaggagccatctcagggcagacagggaaggcgtcac-tgtag--agacttttcagctgaggcctgagagatgCTGTATGATCACACtccctagggccgctgtagcaaatttcccc------------------aaacagcacag------------atttattcccttaggcacctggaggtcagaaatcagcaaagagtcttaaggg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123986362 394 + 133663169 gggattgtgt-catccacctggatttattccacagtgtttattccagatgct--------------gggtttggtagggaataagacggtcatgacctctgctctccttggagct-tacatttcagcgtgtgagt---------------------gggctggttaacgacaacaacaaa--tatacaaacagatacagcaatggcaggttgtg--gcaagtgtcacgagagcaaagggga-ggtgctgt--aagagagtgtgggcaggagccatctcagggctgacagggaaggcgtcac-tgt----agacttttcagccgaggcctcagaggtggtgTATGGTCACACtccctgtggtcgctgtagcaaatttcccc------------------aaacagcacag------------atttattacctcaggcgcctgggggtcagaaatcagaaaagggtgttaaggg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128233753 394 + 137757926 GGGATTGTGT-CATCCACCTGGATTTATTCCACAGTGTTtattccagacgct--------------gggtttggtagggaataagacggtcatgacctctgctctccttggagct-tacatttcagcgtgtgagt---------------------gggctggttaacgacaacaacaaa--tatacaaacagatacagcaatggcaggttgtg--gcaagtgtcacgagagcaaagggga-ggtgctgt--gagagagtgtgggcaggagccatctcagggctgacagggaaggcgtcac-tgt----agacttttcagccgaggcctcagaggtggtgTATGGTCACACtccctgtggtcgctgtagcaaatttcccc------------------aaacagcacag------------atttattacctcaggcgcctgggggtcagaaatcagaaaagggtgttaaggg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10633408 394 - 16319837 gggattgtgt-catccacctggatttattccacagtgtttattccagacgct--------------gggtttggtagggaataagacggtcatgacctctgctctccttggagct-tacatttcagcgtgtgagt---------------------gggctggttaacgacaacaacaaa--tatacaaacagatacagcaatggcaggttgtg--gcaagtgtcacgagagcaaagggga-ggtgctgt--gagagagtgtgggcaggagccatctcagggctgacagggaaggcgtcac-tgt----agacttttcagccgaggcctcagaggtggtgTATGGTCACACtccctgtggtcgctgtagcaaatttcccc------------------aaacagcacag------------atttattacctcaggcgcctgggggtcagaaatcagaaaagggtgttaaggg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12256442 396 + 20526591 GGGATTGTGT-CATCCACCTGGATTTATTCCACAGTGTTtattccagacgct--------------gggtttggtagggaataagacggtcatgacctctgctctccttggagct-tacatttcagcgtgtgagt---------------------gggctggttaacgacaacaacaaa--tatacaaacagatacagcaatggcaggttgtg--gcaagtgtcacgagagcaaagggga-ggtgctgt--gagagagtgtgggcaggagccatctcagggctgacagggaaggcgtcac-tgtag--agacttttcagccgaggcctgagaggtggtgTATGGTCACACtccctgtggtcgctgtagcaaatttcccc------------------aaacagcacag------------atttattaccttaggcgcctgggggtcagaaatcagaaaagggtgttaaggg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119228476 396 + 128539186 gggatcgtgt-catccacctGGATTTATTCCACAGTGTTtattccagacact--------------gggtttggtagggaataagacggtcatgacctctgctctccttggagct-tacattttagcgtgtgagt---------------------gggctggttaacgacaacaacaaa--tatacaaacagatacagcaattgcaggttgtg--gcaagtgtcacgagagcaaagggga-ggtgctgt--gagagagtgtgggcaggagccatctcagggctgatagggaaggcatcac-tgtag--agacttttcagccgaggcctgagaggtggtgTATGGTCACACtccctgtggttgctgtagcaaatttcccc------------------aaaccgcacag------------atttattaccttaggcgcctgggggtcagaaatcagaaaagggtgttaaggg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 558253 394 + 6255621 gggattgtgt-catccacctAGATTTATTCCACAGTGTTtattccagacgct--------------gggtttggtagggaataagacggtcatgacctctgctctccttggagct-tacatttcagcgtgtgagt---------------------gggctggttaacgacaacaacaaa--tatacaaacagatacagcaatggcaggttgtg--gcaagtgtcacgagagcaaagggga-ggtgctgt--gagagagtgtgggcaggagccatctcagggctgacagggaagacgtcac-tgt----agacttttcagccgaggcctgagaggtggtgTATGGTCACACtccctgtggtcgctgtagcaaatttcccc------------------aaacagcacag------------atttattaccttaggcgcctgggggtcagaaatcagaaaagggtgttaaggg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4605796 398 - 8658521 GGGATTGTGT-CATCCACCTGGATTTATTCCACAGTGTTtgttccagacact--------------gggcttggtagggaataagacggtcatgacctctgctctccttggagca-tacatttcagggtgtgagt---------------------gggctggttaacgacaacaacaaa--tatacaaacagatacagcaattgcaggttgtg--gcaagtgtcgcgagagcaaagggga-ggtgctgtgagagagagtgtgggcaggagccgtctcagggctggcagggaaggcgtcac-tgtag--agacttttcagctgaggcctgagagatggtgTATGATCATACtccctgtggccgctgtagcaaatttcccc------------------aaacagcacag------------atttattaccttaggcgcctggggatcagaaatcagaaaagggtcttaaggg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114807388 380 + 124281992 gggatcgtgc-catccacctggatatattccACAGTGTTtatttgagacact--------------gggtttggtagggagtaagatggtcatgacctctgccctccttggagca-cacgcttcagggtgtgagt---------------------ggct---ttaaggacaagaacaga--tacgcaaagagatacagcacttgcagattgtg--gtaagggtcaggagtgcaaa----------------gggagagcgtgggcagaagccgtctcagggcaggcagggaatgcttcac-tgtag--agactcttcagctgggacctgagaggtggtgtgtgatcgTgctccctatggctgctgttacaaattttccc------------------aaacagcacag------------atttattcctttatgcgcctggaggtcagaaatcagaaaagagtcttaaggg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 451888 382 - 9212255 gggattgtgt-catccacctGGATTTATTCCACAGTGTTtattccagacact--------------ggatttggtagggagtaagatggtcatgacctctgccctccttggagca-tacacttcagggtgtgagt---------------------gggttggttaaggacaagaacaga--taggcaaagagatacagcacttgcaaattgtg--gtaagggtcatgagtgcaaa----------------gggagagcgcgagcagaagccatctcagggcaggcagggaatgcttcac-tgtag--agactcttcagctgggacctgagagaCAGCGTGTGATTGTgctccctatggctgctgttacaaattttccc------------------agactgcgcag------------acttattcctttatgtgcctggcggtcagaaatcagaaaagagtc-taaaga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2866528 383 + 4466143 GGGATTGTGT-CACCCACCTGGATTTATTCCACAGTGTTTATTCCAGACACT--------------GGGTTTGGTAGGGGGTAAGATGGTCATGACCCCTGCCCTCCTTGGAGCA-TGCGCTTCAGGGTGTGAGT---------------------GGGTTGGTTAAGGACAAGAACAGA--TAGGCAGAGAGATACAGCACCTGCAGACTGTC--GTAAGGGTCATGCGTGCAAA----------------GGGAGAGCGTGGGCAGAAGCCATCTCAGGGCAGGCAGGGAATGCTTCAC-TGTAG--AGACTCTTCAGCTGGGACCTGAGAGACGGTGTGTGATCGTgctccctgtggctgctgttacaaattttccc------------------aaacagcacag------------atttacgcctttatgcgcctagaggtcagaaatcagaaaagagtcttaaggg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1573141 365 + 5364348 gggattgtgt-catccacctggatttattccacagtgtttaTTCCAGACGCT--------------GGGTTTGGTGGGGAGTAAGGTGTTCATGACCTCTGCCCTCCTTGGAGCATTACACTTCAGGGTGTGAGT---------------------GGGTTGGTTAAGGACAAGAACAGA--CACGCAA--AGATACAGCACTTGCAGATTGTG--GTAAGGGTCATGAGTGCAAA----------------GGGAGAGCGTGGGCAGAAGTCATCTCAGGGCAGGCAGGG--------AC-TGTAG--AGA--CTTCAGCTGG-------GAGACGGTGTGTGATCGTGCTCCCTATGGCTGCTGTTCCAGATTTTCCC------------------aaacagcacag------------atttattcctttatacgcctggaggtcagaaatcagaaaagagtcttaaggg i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4298905 398 + 7922563 GGGGCCATGT-CACTCACTTGGGTTTATCCCACACTGTTTATTTCAGATAAT--------------GGATCTGGTAGGGAA-AAGTCAGTCATGACCTCTGCCTTCCTTGAAAAT----------GAGTGTGTGT---------------------GGGCTGATTA---ATAACAACAGA--AACAAAGAAAGATCCAGCAATTACCAATTGCAATATAGGGGCTATGAATGAGAAGAATA-GGTGTTAT--GAGAGGACTTGGGTGCTGTCTGTCTCA-GTTAGACAGGGAAGGCTGCAC-TGTAAGCAGACTTTTTAGCCAACACCTGAAAGATGGTA---GGTTAGgctccctgtggccaccata--agacttcaccctgaatgcagcagcttaaaaacaatgcaa------------atttatttccttaaggatctgaagatca-aagtcagaaaaggatctgaatag i otoGar3.GL873618 I 112 C 0 s dasNov3.JH568189 832065 439 - 1116856 GGTACCATGC-CATGCACTTGGATTTATTCCACAAGGGTTGCTCTTTGTCCTTCCTATGGACTTGAGGACTCAGCTGGAAATAAGACAGTTATAGCATCTGTCCTCCTCAAAGCC-TGTAGTCCAgtgtgtgtgtgtatgtgtgtgtgtgAGAATAGGTCAAATTAACATCAACAGCAAAACCCTACAAAGATCTAGAGTGaatatgaattctg--ataggtac--tgaatgagaagaacagggtgcagtgaaggagaataaaggcaggacccatttttgctttgatacagaagccttcctatgaag--agac-tttaagctaagacctgaaag----tgtataaat---ttcctgattgctgctataacaaattaccac------------------aaattttgtggcttggaaacaacagttattcccttgtagttctggaagccagaagcacaaaatgaatctcGAGGG i dasNov3.JH568189 C 0 I 538 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e canFam3.chr26 33152509 74 - 38964690 I a score=947498.000000 s hg38.chr12_KI270834v1_alt 63284 90 + 119498 gttaagatcagggtgttggtggggctggttccttccagagcttcctggggacactctgtttccctgtctcttccaactgcttcaggccac- s panTro5.chr12 127349347 90 + 137163284 gttaaaatcagggtgttggtggggctggttccttccagagcttcctggggacactctgtttccctgtctcttccaactgcttcaggccac- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125700572 90 + 135337776 gttaaaatcagggtgttggtggggctggttccttccagagcttcctggggacactctgtttccctgtctcttccaactgcttcaggccac- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8213554 90 - 8369578 gttaaaatcagggtgttggtggcgctggttccttccagagcttcctggggacactctgtttccctgtctcttccaactgcttcaggccac- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97861436 90 + 106955855 gttaaaatcagagtgttggcggggctggttccttccagagcttcctggggacactctgtttccctgtctcttccagctgcttcaggtcac- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123986756 90 + 133663169 gttaaaatcagggtgttggcagggctggttccttccagagcttcctggggagactttgtttccctgcgtcttccaactgcttcaggccac- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128234147 90 + 137757926 gttaaaatcagggtgttggcagggctggttccttccagagcttcctggggagactttgtttccctgcatcttccaactgcttcaggccac- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10633802 90 - 16319837 gttaaaatcagggtgttggcagggctggttccttccagagcttcctggggagactttgtttccctgcgtcttccaattgcttcaggccac- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12256838 90 + 20526591 gttaaaatcagggtgttggcagggctggttccttccagagcttcctggggagactttgtttccctgcgtcttccaactgcttcaggccac- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119228872 90 + 128539186 gttaaaatcagggtgttgacagggctggttccttccagagcttcccagggagactttgtttccctgcgtcttccaactgcttcaggccac- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 558647 90 + 6255621 gttaaaatcagggtgttggcagggctggttccttccagagcttcctggggagactttgtttccctgcgtcttccaactgcttcaggccac- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4606194 90 - 8658521 gttaaaatcagggtgttggcagggctggttcctttcagagcttcctggggagactttgtttccctgtgtcttccaactgctccaggccac- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114807768 90 + 124281992 gttaaaatcacggtgttggtagggctggttccttccagagcttcctggggagactctgtttccctgtctcttccaacttcttcaggccac- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 452270 90 - 9212255 gttaaaatcagggtgtgggtggggcttgttccttccagagcttcctggagaaatacagtttctctgtctcttccaacttcttcaggccgc- i saiBol1.JH378194 C 0 I 700 s cebCap1.NW_016107484v1 2866911 88 + 4466143 gttaaaatcagggtgttgctggggctggttccttccagagcttcctgggtaga--ctgtttccctgtctcttccaacttcttcaggccac- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1573506 90 + 5364348 gttaaaatcagggtgttggtggggctggttccttctagaacttcctggggagactctgtttccctgtctcttccaaattcttcaggccac- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4299303 90 + 7922563 gctaaaatcaaggcactggcagggatggctccttctggaggatcccaagaagggtttgtttct-tatctcttccagctgctagaggctggt i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 832504 538 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I a score=12000.000000 s hg38.chr12_KI270834v1_alt 63374 1 + 119498 c s panTro5.chr12 127349437 1 + 137163284 c i panTro5.chr12 C 0 C 0 s panPan2.chr12 125700662 1 + 135337776 c i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8213644 1 - 8369578 c i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97861526 1 + 106955855 c i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123986846 1 + 133663169 c i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128234237 1 + 137757926 c i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10633892 1 - 16319837 c i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12256928 1 + 20526591 c i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119228962 1 + 128539186 c i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 558737 1 + 6255621 c i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4606284 1 - 8658521 c i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114807858 1 + 124281992 c i calJac3.chr9 C 0 I 1 s cebCap1.NW_016107484v1 2866999 1 + 4466143 c i cebCap1.NW_016107484v1 C 0 I 779 s aotNan1.NW_018491581v1 1573596 1 + 5364348 c i aotNan1.NW_018491581v1 C 0 I 702 s otoGar3.GL873618 4299393 1 + 7922563 c i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 832504 538 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e saiBol1.JH378194 452360 700 - 9212255 I a score=7800.000000 s hg38.chr12_KI270834v1_alt 63375 1 + 119498 c s panTro5.chr12 127349438 1 + 137163284 c i panTro5.chr12 C 0 C 0 s panPan2.chr12 125700663 1 + 135337776 c i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8213645 1 - 8369578 c i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97861527 1 + 106955855 c i nomLeu3.chr10 C 0 I 1 s rheMac8.chr11 123986847 1 + 133663169 c i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128234238 1 + 137757926 c i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10633893 1 - 16319837 c i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12256929 1 + 20526591 c i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119228963 1 + 128539186 c i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 558738 1 + 6255621 c i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4606285 1 - 8658521 c i colAng1.NW_012116043v1 C 0 I 13 s otoGar3.GL873618 4299394 1 + 7922563 c i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 832504 538 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807859 1 + 124281992 I a score=7938.000000 s hg38.chr12_KI270834v1_alt 63376 2 + 119498 gt s panTro5.chr12 127349439 2 + 137163284 gt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125700664 2 + 135337776 gt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8213646 2 - 8369578 gt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97861529 2 + 106955855 gt i nomLeu3.chr10 I 1 C 0 s rheMac8.chr11 123986848 1 + 133663169 -t i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128234239 1 + 137757926 -t i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10633894 1 - 16319837 -t i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12256930 1 + 20526591 -t i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119228964 1 + 128539186 -t i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 558739 1 + 6255621 -t i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114807860 2 + 124281992 gt i calJac3.chr9 I 1 I 667 s otoGar3.GL873618 4299395 2 + 7922563 gt i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 832504 538 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e colAng1.NW_012116043v1 4606286 13 - 8658521 I a score=65949.000000 s hg38.chr12_KI270834v1_alt 63378 20 + 119498 ttcttggctcTTTAGCTCGC s panTro5.chr12 127349441 20 + 137163284 ttcttggctctttagctcgc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125700666 20 + 135337776 ttcttggctcTTTAGCTCGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8213648 20 - 8369578 ttcttggctctttggctctc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97861531 20 + 106955855 ttcttggctcgttggctcgc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123986849 19 + 133663169 atcgtggctccttggcttg- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128234240 19 + 137757926 atcgtggctccttggcttg- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10633895 19 - 16319837 atcatggctccttggcttg- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12256931 19 + 20526591 atcatggctccttggcttg- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119228965 19 + 128539186 atcgtggctccttggcttg- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 558740 19 + 6255621 atcgtggctccttggcttg- i manLeu1.NW_012103587v1 C 0 C 0 s otoGar3.GL873618 4299397 20 + 7922563 acttttgctccttggttcac i otoGar3.GL873618 C 0 I 1 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 832504 538 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e colAng1.NW_012116043v1 4606286 13 - 8658521 I a score=1956185.000000 s hg38.chr12_KI270834v1_alt 63398 341 + 119498 TGGCTCTCATCCTTCCAGTCTCTACTTCTGTCATCCTGATGCAAACTCAGCTGCTTCTCTCTTGTGGGGACCCCTGTGATCGTCTCCAGCCCACCTGGGTAATTGAGAGCACGCGCTCCATCCCACCATCCTTGGCTGCGTCACATCCACAGAGTCC--TTTTTGCAGGAAACATAAAGAAACCCATTGGCCGGTTCCTGGGCTTAGGATGCCATGGACACCTTTAGAGGGCTGTTGTGCAgg------gatcag------------------------------------------gacgaggtggaggggttctatg------------------------------------gcgtggaacctt-------------gtaggtcatttataggagataagattttattctcagtgcaatgacgtagtccagatttat s panTro5.chr12 127349461 341 + 137163284 tggctctcatccttccagtctctgcttctgtcatcctgatgcaaactcagctgcttctctcttgtggggacccctgtgattgtctccagcccacctgggtaattgagagcacgcgctccatcccaccatccttggctgcgtcacatccacagagtcc--tttttgcaggaaacataaagaaacccattggccggttcctgggcttaggatgccatggacacctttagagggctgttgtgcagG------gatcag------------------------------------------gacgaggtggagggggtctatg------------------------------------gcgtggaacctt-------------gtaggtcatttataggagataagattttattctcagtgcaatgacgtagtccagatttat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125700686 341 + 135337776 TGGCTCTCATCCTTCCAGTCTCTGCTTCTGTCATCCTGATGCAAACTCAGCTGCTTCTCTCTTGTGGGGACCCCTGTGATTGTCTCCAGCCCACCTGGGTAATTGAGAGCACGCGCTCCATCCCACCATCCTTGGCTGCGTCACATCCACAGAGTCC--TTTTTGCAGGAAACATAAAGAAACCCATTGGCCGGTTCCTGGGCTTAGGATGCCATGGACACCTTTAGAGGGCTGTTGTGCAgg------gatcag------------------------------------------gacgaggtggagggggtctatg------------------------------------gcgtggaacctt-------------gtaggtcatttataggagataagattttattctcagtgcaatgacgtagtccagatttat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8213668 341 - 8369578 tggctctcatccctccagtctctgcttctgtcatcCTGATGCAAACTCAGCTGCTTCTCTCTTGTGGGGACCCCCGTGATCGTCTCCAGCCCACCTGGGTAATTGAGATCACGCGCTCCATCCCACCATCCTTGGCTGCGTCACATCCACAGAGTCC--TTTTTGCAGGAAACATAAAGAAACCCATTGGCCGGTTCCTGGGCTTAGGATGCCATGGACACCTTTAGAGGGCTGTTGTGCAgg------gatcag------------------------------------------gacgaagtggagggggtctatg------------------------------------acgtggaacctt-------------gtaggtcatttataggagataagattttattctcagtgcaatgatgtagtccagatttat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97861551 341 + 106955855 tgcctctcatccctccagtctctgcttctgtcatcctgatgccagctcggctgcttctctcttgtgaggacccctgtgattgtctccagcccacctggataattgagagcatttgctccatttcaccatccttaactgagtcacatccacaaagtcc--tttttgcaggaaacaaaaggaaacccactggcaggttcctgggcttaggatgccatggacacctttagggggctgttgtgcagG------gatcag------------------------------------------gacgaggtggagggggtctatg------------------------------------acgtggaacctt-------------gtgggtcatttataggagataagattttactctcagtgcaatgatgtagtctagatttgt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123986868 333 + 133663169 -------catccctccagtatctgcttctgtcatcctgatgcaaactcagctgcttctctcttgtaaggacccctgtgattgtctccagcccacctggataatcaagagcatttgccgcatctcaccatccttgaccgcgttacatccacaaagtcc--tttttgcaggaaacataaggaaacctgttggcaggttcctggacttaggatgccatggacacctttatggagctgttgtgcagG------GATCGG------------------------------------------GATGGGGTGGAGGGG-TCTGTG------------------------------------ACGTGGAACCTT-------------GTGGGTCATTTATAGGAGATAAGATTTTATTCTCGGTGCAATGATGTAGTCTAGATTTAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128234259 333 + 137757926 -------catccctccagtatctgcttctgtcatcctgatgcaaactcagctgcttctctcttgtaaggacccctgtgattgtctccagcccacctggataatcaagagcatttgccgcatctcaccatccttgactgcgttacatccacaaagtcc--tttttgcaggaaacataaggaaacctgttggcaggttcctggacttaggatgccatggacacctttatggagctgttgtgcagG------GATCAG------------------------------------------GATGGGGTGGAGGGG-TCTGTG------------------------------------ACGTGGAACCTT-------------GTGGGTCATTTATAGGAGATAAGATTTTATTCTCGGTGCAATGATGTAGTCTAGATTTAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10633914 331 - 16319837 -------catccctccagtatctgcttctgtcatcctgatgcaaactcagctgcttctctcttgtaaggacccctgtgattgtctccagcccacctggataatcaagagcatttgccgcatctcaccatccttgaccgcgttacatccac--agtcc--tttttgcaggaaacgtaaggaaacctgttggcaggttcctggacttaggatgccatggacacctttatggagctgttgtgcagG------GATCGG------------------------------------------GATGGGGTGGAGGGG-TCTGTG------------------------------------ACGTGGAACCTT-------------GTGGGTCATTTATAGGAGATAAGATTTTATTCTCGGTGCAATGATGTAGTCTAGATTTAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12256950 333 + 20526591 -------catccctccagtatctgcttctgtcatcctgatgcaaactcagctacttctctcttgtaaggacccctgtgattgtctccagcccacctggataatcaagagcattcgctgcatctcaccatccttgactgcgttacatccgcaaagtcc--tttttgcaggaaacataaggaaacctgttggcaggttcccggacttaggatgccatggacacctttatggagctgttgtgcagG------GATGGG------------------------------------------GATGGGGTGGAGGGG-TCTATG------------------------------------ACGTGGAACCTT-------------GTGGGCCATTTATAGGAGATAAGATTTTATTCTCGGTGCAATGATGTAGTCTAGATTTAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119228984 333 + 128539186 -------catccctccagtatctgcttctgtcatcctgatgcaaactcagctgcttctctcttgtaaggacccctgtgattgtctccagcccacctggataatcaagagcattcgccacatctcaccatccttgactgagttacatccgcaaagtcc--tttttgcaggaaacataaggaaacctgttggcaggttcccggacttaggatgccatggacacctttatggagctgttgtgcagG------GATCGG------------------------------------------GATGGGGTGGAGGGG-TCTATG------------------------------------ACGTGGAACTTT-------------GTGGGTCATTTATAGGAGATAAGATTTTATTCTCGGTGCAATGATGTAGTCTAGATTTAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 558759 333 + 6255621 -------catccctccagtatctgcttctgtcatcctgatgcaaactcagctgcttctctcttgtaaggacccctgtgattgtctccagcccacctggataatcaagagcattcgccgcatctcaccatccttaactgagttacatccgcaaagtcc--tttttgcaggaaacataaggaaacctgttggcaggttcccggacttaggatgccatggacacctttatggagctgttgtgcagG------GATCGG------------------------------------------GATGGGGTGGAGGGG-TCTATG------------------------------------ACGTGGAACCCT-------------GTGGGCCATTTATAGAAGATAAGATTTTATTCTCGGTGCAATGATGTAGTCTAGATTTAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4606299 340 - 8658521 tggcttgcatccctctagtatctgcttctgtcatcctgatgcaaactcagctgcttctctcttgtaaggacccctgtgattgtctccagcccacctggataatcaagagcattcgccccacctcaccatccttgacgtagttacatccgcaaagtcc--tttttgcaggaaacataaggaaacctgttggcagattcctggacttaggatgccatggacacctttatggagctgttgtGCCGG------GATCGG------------------------------------------GATGGGCTGGAGGGG-TCTATG------------------------------------ACGTGGAACCTT-------------GTGGGTCATTTATAGGAGATAAGATTTTATTCTCGGTGCAATGATGTAGTCTAGATTTAT i colAng1.NW_012116043v1 I 13 C 0 s otoGar3.GL873618 4299418 411 + 7922563 ----------tagtccagtctctgtctctgtcatctggactcagattc----------------tgaggatccttgtgattgccttgggcccccttggataagcca-agtctttg-tccatctcaggacccttaacttagccacatctgcagagttccatttttgcaagaaatgtaaggaaacttgctcataagttgcagggtttagagtattgtggacatccacgggaggctgttattcaggcccacaGATGAGAGTAGAAGCTGGCTAGATGGTTGTGCTCACCAGAGCACTAGAGGTGGAGGGGAGGGG-TCCATGTGCTGAGGAGCCAACAGGGCAGGTATGTGGTTGAATGGGGGGAGCATCAGGACACAGTGGAGAGGGCCATTTACAGGAGATGAGATTGTATTCCTGGTGCagtgatgtggtctagatttat i otoGar3.GL873618 I 1 I 1691 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 832504 538 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I a score=1579294.000000 s hg38.chr12_KI270834v1_alt 63739 321 + 119498 gggtttttta-attttttagatttaattaattaattatttcagagacagggtcttactctgttgcccaggccagaatgcagcggcatgatcatagctcattgtagcttccaactcctgggcttacacaatcttcctgtcccagcctttcgagtagctgggactacagatgcatctcaccacaaccagctgatt-aaaaaaaaaaaaa----cacacttttttttttaagaggtggagtcttcctgcattgcccaggctggtcttgaactcctgggctctagtgtttttcctgcctcaccttcccaaggtgttgagattacaggcgtg s panTro5.chr12 127349802 320 + 137163284 gggtttttta-attttttagatttaattaattaattatttcagagacagggtcttactctgttgcccaggccagaatgcagcggcatgatcatagctcattgtagcttccaactcctgggcttacacaatcttcctgtcccagcctttcgagtagctgggactacagatgcatctcaccacaaccagctgatt-aaaaaaaaaaaca-----acacttttttttttaagaggtggagtcttgctgcattgcccaggctggtcttgaactcctgggctctagtgtttttcctgcctcaccttcccaaggtgttgagattacaggcgtg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125701027 318 + 135337776 gggtttttta-attttctagatttaattaattaattatttcagagacagggtcttactctgttgcccaggccagaatgcagcggcatgatcatagctcattgtagcttccaactcctgggcttacacaatcttcctgtcccagcctttcgagtagctgggactacagatgcatctcaccacaaccagctgatt-aaaaaaaaaacaa----cac---tttttttttaagaggtggagtcttgctgcattgcccaggctggtcttgaactcctgggctctagtgtttttcctgcctcaccttcccaaggtgttgagattacaggcgtg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8214009 316 - 8369578 gggtttttta-attttttagacttaattaattaattatttcagagacagggtcttactctgttgcccaggccagaat------gcatgatcatagctcattatagcttccaactcctgggcttacacaatcttcctgtcccagcctttcgagtagctgggactacagatgcgtctcaccacaaccagctgatt-aaaaaaaaaaacaacaacac---ttttttttaaagaggtggagacttgctgcattgcccaggctggtcttgaactcctgggctctagtgtttttcctgcctcaccttcccaaggtgttgagattacaggcgtg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97861892 314 + 106955855 gggtttttta-attttttagatttaattaattaattatttcagagacagggtcttgctctgttgcccaggccagaatgaagcggcatgatcatagctcattgtagcttccagctcctgggcttacacgatcttcctgtcccagcctttcaagtagctgggactacagatgcatctcaccacaaccagctgatt-aaaaaaaaaaaaa----------ttttttttcaagagatagggtcttgctgcattgcccaggctggtcttgaactcctgggctctagtg-ttttcctgcctcaacttcccaaagtgttgggattacaggtgtg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123987201 300 + 133663169 GGGtttttaa-tttttttat------ttaattaattatttcagagacagggtcttgctctgttgcccaggccagaatgtagcggcatgattataggtcatcgtagcttccaactcctggacttacactatcttcctgtcccagcctctcaagtagctgggactacaggtgcctcccaccaaagccagctaatt-aaaaaaa-------------------tttttaaagagatggggtcttgctgtgttgcccaggctggtcttgaactcctgggctctagtgttcttcctgcctcagcttcccaaagtgttgggattacaggtgtg i rheMac8.chr11 C 0 I 123 s macFas5.chr11 128234592 301 + 137757926 GGGtttttaattttttttat------ttaattaattatttcagagacagggtcttgctctgttgcccaggccagaatgtagcggcatgattataggtcatcgtagcttccaactcctggacttacactatcttcctgtcccagcctctcaagtagctgggactacaggtgcctcccaccaaagccagctaatt-aaaaaaa-------------------tttttaaagagatggggtcttgctgtgttgcccaggctggtcttgaactcctgggctctagtgttcttcctgcctcagcttcccaaagtgttgggattacaggtgtg i macFas5.chr11 C 0 I 54 s macNem1.NW_012010578v1 10634245 300 - 16319837 GGGtttttaa-tttttttat------ttaattaattatttcagagacagggtcttgctctgttgcccaggccagaatgtagcggcatgattataggtcatcgtagcttccaactcctggacttacactatcttcctgtcccagcctctcaagtagctgggactacaggtgcctcccaccaaagccagctaatt-aaaaaaa-------------------tttttaaagagatggggtcttgctgtgttgcccaggctggtcttgaactcctgggctctagtgttcttcctgcctcagcttcccaaagtgttgggattacaggtgtg i macNem1.NW_012010578v1 C 0 I 136 s cerAty1.NW_012001186v1 12257283 296 + 20526591 GGGtttttaa-tttttttat----------ttaattatttcagagacaggatcttgctctgttgcccaggccagaatgtagcggcatgattataggtcatcgtagcttccaactcctggacttacactatcttcctgtcccagcctctcaagtagctgggactacaggtgcatcccaccaaagccagctaatt-aaaaaaa-------------------ttttttaagagatggggtcttgctgtgttgcccaggctggtcttgaactcttgggctctagtgttcgtcctgcctcagcttcccaaagtgttgggattacaggtgtg i cerAty1.NW_012001186v1 C 0 I 1250 s chlSab2.chr11 119229317 299 + 128539186 AGGTTTTAAA-tttttttat------ttaattaattatttcagagacagggtcttgctctgttgcctaggccagaatgtagcggcttgattataggtcatcgtagcttccaactcctggacttacactgtcttcctgtcccagcctctcaagtagctgggactacaggtgcatcccgccaaagccagctaatt--aaaaaa-------------------atttttaagagatggggtcttgctgtgttgcccaggctggtcttgaactcctgggctctagtgttcttcctgcctcagcttcccaaagtgttgggattacaggtgtg i chlSab2.chr11 C 0 I 118 s manLeu1.NW_012103587v1 559092 296 + 6255621 GGGtttttaa-tttttttat----------ttaattatttcagagacaggatcttgctctgttgcccaggccagaatgtagtggcatgattataggtcatcgtagcttccaactcctgtacttatactatcttcctgtcccagcctctcaagtagctgggactacaggtgcatcccaccaaagccagctaatt-aaaaaaa-------------------atttttaagagatggggtcttgctgtgttgcccaggctggtcttgaactcctgggctctagtgttcttcctgcctcagcttcccaaagtgttgggattacaggtgtg i manLeu1.NW_012103587v1 C 0 I 2956 s colAng1.NW_012116043v1 4606639 301 - 8658521 GGGtttttaa-ttcttttat------ttaattaattatttcagagacagggtcttgctctgttccccgggccagaatgtagcggcatgattataggttatcgtagcttccagctccaggacttacactatcttcctgtcccagcctctcaagtagctgggactacaggtgcatcccaccaaagccagctaattaaaaaaaa-------------------ttttttaagagatggggtcttgctgtgttgcccaggctggtcttgaactcctgggctctagtgttcttcctgcctcagcttcccaaagtgttggggttacaggtgtg i colAng1.NW_012116043v1 C 0 I 118 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 832504 538 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I a score=5505.000000 s hg38.chr12_KI270834v1_alt 64060 5 + 119498 agcca s panTro5.chr12 127350122 5 + 137163284 agcca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125701345 5 + 135337776 agcca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8214325 5 - 8369578 agcca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97862206 5 + 106955855 agcca i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128234947 5 + 137757926 AGTAA i macFas5.chr11 I 54 I 46 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 832504 538 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e colAng1.NW_012116043v1 4606940 118 - 8658521 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e chlSab2.chr11 119229616 118 + 128539186 I e cerAty1.NW_012001186v1 12257579 1250 + 20526591 I e macNem1.NW_012010578v1 10634545 136 - 16319837 I e rheMac8.chr11 123987501 123 + 133663169 I a score=22641.000000 s hg38.chr12_KI270834v1_alt 64065 9 + 119498 ctgcaccca s panTro5.chr12 127350127 9 + 137163284 ctgcaccca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125701350 9 + 135337776 ctgcaccca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8214330 9 - 8369578 ctgcaccca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97862211 9 + 106955855 ctgcaccca i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128234998 9 + 137757926 CTGCGCCCA i macFas5.chr11 I 46 C 0 s chlSab2.chr11 119229734 9 + 128539186 CTGCGCCCA i chlSab2.chr11 I 118 C 0 s colAng1.NW_012116043v1 4607058 9 - 8658521 CTGCGCCCA i colAng1.NW_012116043v1 I 118 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 832504 538 - 1116856 I e canFam3.chr26 33152509 74 - 38964690 I e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e cerAty1.NW_012001186v1 12257579 1250 + 20526591 I e macNem1.NW_012010578v1 10634545 136 - 16319837 I e rheMac8.chr11 123987501 123 + 133663169 I a score=17840.000000 s hg38.chr12_KI270834v1_alt 64074 11 + 119498 gccaagattta s panTro5.chr12 127350136 11 + 137163284 gccaagattta i panTro5.chr12 C 0 C 0 s panPan2.chr12 125701359 11 + 135337776 gccaagattta i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8214339 11 - 8369578 gccaagattta i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97862220 11 + 106955855 gccaagattta i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128235007 9 + 137757926 GCTAAAATT-- i macFas5.chr11 C 0 C 0 s chlSab2.chr11 119229743 10 + 128539186 GCCAAAATTt- i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4607067 10 - 8658521 GCCAAAATTt- i colAng1.NW_012116043v1 C 0 C 0 s canFam3.chr26 33152583 11 - 38964690 gtccaggctta i canFam3.chr26 I 74 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 832504 538 - 1116856 I e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e cerAty1.NW_012001186v1 12257579 1250 + 20526591 I e macNem1.NW_012010578v1 10634545 136 - 16319837 I e rheMac8.chr11 123987501 123 + 133663169 I a score=2458357.000000 s hg38.chr12_KI270834v1_alt 64085 621 + 119498 tgtttctaaaagatccctccag-tgcgccgtggggacgagattagaggggaacaggagtgggagaggggcatccagtttggagctacccctgcagtgtaggcaggaagtgacagcgattggaggagggtagggc---actggggacagagagaagtgggtggattcacgaggtattcaggaggcagagccaacgggacttcgatcgatttggctgtgggtt--------gggggaggggtatcaagggtgactcccaggtttctggtggagcgagtgatcagtgcttccatttgctgagatgaggaagacCAGTTCTGGGCTTGTGGCATTAGGAGCGTGTTGAGTTTGCTGCACTAGATGAGAA---TCTGAATGTGATGTCATATAGtgtattagtttgctggggctgccgtcacaaaatgccacaaactgggtggcttaaaacaatagaaatct-----------------------------------actct------cacagttctg----------------gagg------------------------------------------------------ccaggagcccaagatcacggtgtcggcagagcccgttccttct-gagctctgggtgggggaatctg---------tgttgctggtggctgctga-------cagtctttggtg--ttccttggcttgtaggcacagaactccagtccctgtcttcgttgtcacgtggccttccccttgt-- s panTro5.chr12 127350147 621 + 137163284 tgtttttaaaagatccctccag-tgccccgtggggacgagattagaggggaacaggagtgggagagggacgtccagtttggagctacccctgcagtgtaggcaggaagtgacagcgattggaggagggtggggc---actggggacagagagaagtgggtggattcacgaggtattcaggaggcagagccaacaggacttcgatcgatttggctgtaggtt--------gggggaggggtatcaagggtgactcccaggtttctggtggaatgagtgatcagtgcttccatttgctgagatgaggaagacCAGTTCTGGGCTTGCAGCATTAGGAGCGTGTTGAGTTTGCTGCACTAGATGAGAA---TCCGAATGTGATGTCATATAGtgtattagtttgctggggctgccgtcacaaaatgccacaaactgggtggcttaaaacaatagaaatct-----------------------------------actct------cacagttctg----------------gagg------------------------------------------------------ccaggagcccaagatcacggtgtcggcagagcccgttccttct-gagctctgggtgggggaatctg---------tgttgctggtggctgctga-------cagtctttggtg--ttccttggcttgtaggcacagaactccggtccctgtctttgttgtcacgtggccttccccttgt-- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125701370 621 + 135337776 tgtttttaaaagatccctccag-tgccccgtggggacgagattagaggggaacaggagtgggagagggacgtccagtttggagctacccctgcagtgtaggcaggaagtgacagcgattggaggagggtggggc---actggggacagagagaagtgggtggattcacgaggtattcaggaggcagagccaacaggacttcgatcgatttggctgtaggtt--------gggggaggggtatcaagggtgactcccaggtttctggtggaatgagtgatcagtgcttccatttgctgagatgaggaagaccagttctgggcttgcagcattaggagcgtgttgagtttgctgcactagatgagaa---tccgaatgtgatgtcatatagtgtattagtttgctggggctgccgtcacaaaatgccacaaactgggtggcttaaaacaatagaaatct-----------------------------------actct------cacagttctg----------------gagg------------------------------------------------------ccaggagcccaagatcacggcgtcggcagagcccgttccttct-gagctctgggtgggggaatctg---------tgttgctggtggctgctga-------cagtctttggtg--ttccttggcttgtaggcacagaactccggtccctgtcttcgttgtcacgtggccttccccttgt-- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8214350 618 - 8369578 tgtttttaaaagatccctccag-tgccccgtggggactagattagaggggaacaggagtgggagaggggcgtccagtttggagctacccctgcagtttaggcaggaagtgacagcgattggaggagggtggggc---actgggggcagagagaagtgggtggattcatgaggtattcgggaggcagagccaaca-gacttcgacggatttggctgtaggtt--------gggggaggggtatcaagggtgactcccaggtttctggtggagcgagtgatcggtgcttcca-ttgctgagatgaggaagaccagttctgggcttgtggcattaggagcgtgttgagtttgctgcactagatgagaa---tccgaatgtgatgtcatatagtgtattagtttgctggggctgccgtcacaaaatgccacaaactgggtggcttaaaacaatagaaatct-----------------------------------actct------cacagttctg----------------gagg------------------------------------------------------ccaggagcccaagatca-ggtgtcagcagagcccgttccttct-gagctctgggtgggggaatctg---------tgttgctggtggctgctga-------cagtctttggtg--ttccttggcttgtaggcacagaactccggtccctgtcttcattgtcacgtggccttccccttgt-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97862231 621 + 106955855 tgtttttaaaagatccctccag-tgccccgtggggactagactagaggggaacaggagtgggagaggggcgtccagtttggagctacccctgcagtgtaggcaggaagtgacagtgattggaggagggtagggc---actggggacagagagaagtgggtgaattcacgaggtattcgggaggcagagccaacaggacttcaatggatttggatataggtt--------gggggaggggtatcaagggtgactcccaggtttctggcagagcgagtgatcagtgcttccatttgctgagatgaggaagaccaggtctgggcttgtggcattaggagcgtgttgagtttgctgcactaggtgagaa---tccgaatgtgatgtcatatagtgtattagtttgctggggctgtcgtcagaaagtgccacaaactgggtggcttaaaacaacagaaatct-----------------------------------actct------cacagttctg----------------gagg------------------------------------------------------ccaggagcccaaggtcacggtgtcggcagagcccgttccttct-gagctctgggtgggggaatctg---------tgttgctggcggctgctga-------cagtctttggtg--ttccttggcttgtaggcacagcactcccatccctgtcttcgttgtcatgtggccttccccttgt-- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123987624 628 + 133663169 tgtttttaaaagatccctccag-tggcccgtggggactagattagaggggaacaggaatgggagagg--tgtccagtttggagctacccctgcagtgtaggcaggaagtgacagtgattggaggagggtggggc---tctggggacagagagaagcgggtggattcacgaggtattcgggaggcagagccaacaggacttggatggatttggatgtaggtgggtgggggggggggtgggtatcaagggcgactcccaggtttctggcagagcgagtgatcagtgcttccattcgctgagatgaggaagacCAGGTCTGGGCTTGTGGCATTGGCAGCGTGTTGAGTTTGCTGTACTAGGTGAGCAATGTGTGAATGTGATGTCGCATAGtggattagtttgctgggtctgtcgtcacaaagtgccacgaactgggtggtttaaaacaacagaaatct-----------------------------------actct------cacagttctg----------------gagg------------------------------------------------------ccaggagcccaggatcatggtgttggcagagcctgttccttct-gagctctgggtgggggaatctg---------tgttgctggtggctgctg---------agtctttagtg--ttccttggcttgtaggcacagcactcctatccctgtcttcgtcgtcacgtggccttgcccttgt-- i rheMac8.chr11 I 123 I 819 s macFas5.chr11 128235016 628 + 137757926 tgtttttaaaagatccctccag-tggcccgtggggactagattagaggggaacaggaatgggagagg--tgtccagtttggagctacccctgcagtgtaggcaggaagtgacagtgattggaggagggtggggc---tctggggacagagagaagcgggtggattcacgaggtattcgggaggcagagccaacaggacttggatggatttggatgtaggtgggtgggggggggggtgggtatcaagggcgactcccaggtttctggcagagcgagtgatcagtgcttccattcgccgagatgaggaagacCAGGTCTGGGCTTGTGGCATTGGCAGCGTGTTGAGTTTGCTGTACTAGGTGAGCAATGTGTGAATGTGATGTCGCATAGtggattagtttgctgggtctgtcgtcacaaagtgccacgaactgggtggtttaaaacaacagaaatct-----------------------------------actct------cacagttctg----------------gagg------------------------------------------------------ccaggagcccaggatcatggtgttggcagagcctgttccttct-gagctctgggtgggggaatctg---------tgttgctggtggctgctg---------agtctttagtg--ttccttggcttgtaggcacagcactcctatccctgtcttcgtcgtcacgtggccttgcccttgt-- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10634681 626 - 16319837 tgtttttaaaagatccctccag-tggcccgtggggactagattagaggggaacaggaatgggagagg--tgtccagtttggagctacccctgcagtgtaggcaggaagtgacagtgattggaggagggtggggc---tctggggacagagagaagcgggtggattcacgaggtattcgggaggcagagccaacaggacttggatggatttggatgtaggtgggt--ggggggggttgggtatcaagggcgactcccaggtttctggcagagcgagtgatcagtgcttccattcgctgagatgaggaagacCAGGTCTGGGCTTGTGGCATTGGCAGCGTGTTGAGTTTGCTGTACTAGGTGAGCAATGTGTGAATGTGATGTCACATAGtggattagtttgctgggtctgtcgtcacaaagtgccacgaactgggtggtttaaaacaacagaaatct-----------------------------------actct------cacagttctg----------------gagg------------------------------------------------------ccaggagcccaggatcatggtgttggcagagcctgttccttct-gagctctgggtgggggaatctg---------tgttgctggtggctgctg---------agtctttagtg--ttccttggcttgtaggcacagcactcctatccctgtcttcgtcgtcacgtggccttgcccttgt-- i macNem1.NW_012010578v1 I 136 I 39 s chlSab2.chr11 119229753 620 + 128539186 -gttttcaaaagatccctccag-tgccccgtggggactagattagaggggaacaggaatgggagagg--tgtccagtttggagctacccctgcagtgtaggcaggaagtgacagtgattggaggagggtggggc---tctggggacagagagaagcgggtggattcacgaggtattcgggaggcagagccaacaggacttggatggatttggatgtaggt-------ggggggggtgggtatcaagcgcgactgccaggtttctggcagagcgagtgatcagtgcttccgttcgccgagatgaggaagaccaggtctgggcttgtggcattggcagcgtgttgagtttgctgcactaggtgagcaatgtgcgaatgtgatattgcatagtggattagtttgctggggctgtcgtcacaaagtgccacgaactgggtggtttaaaacaacagaaatct-----------------------------------actct------cacagttctg----------------gagg------------------------------------------------------ccaggagcccaggatcatggtgtcggcagagcctgttccttct-gagctctgggtgggggaatctg---------tgttgctggtggctgctg---------agtctttagtg--ttccttggcttgtaggcacagcactcctatccctgtctttgtcatcacgtggccttgcccttgt-- i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4607077 620 - 8658521 -gtttttaaaagatccctccag-tgccccatggggactagattagaggggaacaggaatgggagagg--tgtccagtttggagctacccctgcagtgtaggcaggaagtgacagtgattggaggagggtgcggc---tctggggtcagagagaagccggtggattcacgaggtattcgcgaggcagacccaacaggacttgaatggatttggatgtaggtg-----ggggaggggtgggtatcaagggcgactcccgggtttctggcagagagagtgatcagtgcttccattcgccgagatgaggaagaccaggtctgggcttgtggcattggcagcgtgttgagtttgctgcactaggtgagcaatgtgcgaatgtgatgtcgcatagtggattagtttgctggggctgtcgtcacaaagtgccacgaactgggtggtttaaaacaacagaaatct-----------------------------------gctct------cacagttctg----------------gagg------------------------------------------------------ccaggagcccaggatcatggtgtcagcagagcctgttccttct-gagctttgggtgggggaatc-----------tgttgctggtggctgctg---------agtctttggtg--ttccttggcttgtaggcacagcactcctatccctgtcttcatcgtcgcgtggccttgcccttgt-- i colAng1.NW_012116043v1 C 0 C 0 s canFam3.chr26 33152594 710 - 38964690 tgttttc-acaggtccctctggctgccctgtggagtctagataagagggagataagaataggagagg--------------------------gtggcaggtgacagatgacctgggtctggatggggtggggtggaagtgagaatggaaagaagtgagtggattcctgagatattttggaggtagagcctacaggacttgtacaga-ttggatgagggtg----agggagggagagcccacccagggtggctcccag--ttctggctg---gtgtgagtag----ccccgttgctaggagggggaagagtagatgtgggtttgtgccactaggagggtgtggagtgtgctatacttaggagaaa---tccaaacgggaggtcaggtggtatattgatttgctagggctgctgtaacaaagtaccacaaaatgggtggctgaaaaccacaaatatttggggcacctggctggctaggtcagtggagtgtgcgactcttgattacagggttatgagttcaagcccacgttgagggtagagattacttttaaaaaaacctaaaaccacaaacatttactgtctcacaatctggaggtcccgcatcaaggtgttggcaggggtggttccttctggggctctgg--gggagagtctgtcccaggcctgtctctagcttctgctgatttgctgccggcttctgtggattccttggcttgtggatgcatcac-cctgggtctgccttcatg-----------ttctccctgtgc i canFam3.chr26 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 832504 538 - 1116856 I e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e cerAty1.NW_012001186v1 12257579 1250 + 20526591 I a score=36700.000000 s hg38.chr12_KI270834v1_alt 64706 15 + 119498 gtgc-tgtctgtctct s panTro5.chr12 127350768 15 + 137163284 gtgc-tgtctgtctct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125701991 15 + 135337776 gtgc-tgtctgtctct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8214968 15 - 8369578 gtgc-tgtctgtctct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97862852 15 + 106955855 gttc-tgtctgtctcc i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128235644 14 + 137757926 -TCC-TCTTTGTCTCT i macFas5.chr11 C 0 I 798 s chlSab2.chr11 119230373 15 + 128539186 gtgc-tgtctgtctct i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4607697 15 - 8658521 gtgc-tatctgtctct i colAng1.NW_012116043v1 C 0 C 0 s canFam3.chr26 33153304 16 - 38964690 atgtatatctgtctct i canFam3.chr26 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 832504 538 - 1116856 I e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e cerAty1.NW_012001186v1 12257579 1250 + 20526591 I e macNem1.NW_012010578v1 10635307 39 - 16319837 I e rheMac8.chr11 123988252 819 + 133663169 I a score=332208.000000 s hg38.chr12_KI270834v1_alt 64721 164 + 119498 gtgtccaaatttccctccttt-----ataagggtacctgtcatattgcattagggcccatctcaatgacctcatttcaacttgattatctctgtaaagacaa--tttccaaataaagtcacaatctgagctactttggggacttcagtatatctttttcagggcgacatgc s panTro5.chr12 127350783 164 + 137163284 gtgtccagatttccctccttt-----ataagggtacctgtcatattgcattagggcccatctcaatgacctcatttcaacttgattatctctgtatagacaa--tttccaaataaagtcacagtctgagctactttggggacttcagtatatctttttcagggcgacatgc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125702006 164 + 135337776 gtgtccagatttccctccttt-----ataagggtacctgtcatattgcattagggcccatctcaatgacctcatttcaacttgattatctctgtatagacaa--tttccaaataaagtcacaatctgagctactttggggacttcagtatatctttttcagggcgacatgc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8214983 164 - 8369578 gtgtccaaatttccctccttt-----ataagggtacctgtcatattgcattagggcccatctcaatgacctcatttcaacttgattatctctgtaaagacaa--tttccaaataaagtcacaatctgagctactttggggacttcagtatatctttttcagggcgacatgc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97862867 164 + 106955855 gtgtctgaatttccccccttt-----ataagggcacttgtcgtattgcattagggcccatctcaatgacctcatttcaacttgattatctctgtaaagacaa--tttccaaataaggtcacaatctgagctacttgggggacttcagtatatctttttcagggggacatgc i nomLeu3.chr10 C 0 C 0 s chlSab2.chr11 119230388 164 + 128539186 gtgtccaaatttcctcccttt-----ctaaggacacctgttgtattggattagggaccatctcaatgacctcatttccacttgattatctctgtaaagacaa--tttccaaataaggtcacaatctgagctactcaggggacttcagcctatctcttttggggggacatgc i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4607712 164 - 8658521 gtgtccaaatttcctcccttt-----ataaggacacctgttgtattggattagggaccatctcaatgacctcatttccacttgattatctctataaagacaa--tttccaaataaggtcacaatctgagctactcgggggacttcagcctgtcttttctggggggacatgc i colAng1.NW_012116043v1 C 0 C 0 s canFam3.chr26 33153320 167 - 38964690 gcacccacatttcccctttttatataataaggacaccagttgccctggcttaagacctaccctgatgacctcattttaacttgatgacttctgtaaagaccctttttccaagtcagttcacattctgaggtcct--ggggacttcaacatctcttttttgggggaaca--c i canFam3.chr26 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 832504 538 - 1116856 I e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e cerAty1.NW_012001186v1 12257579 1250 + 20526591 I e macNem1.NW_012010578v1 10635307 39 - 16319837 I e macFas5.chr11 128235658 798 + 137757926 I e rheMac8.chr11 123988252 819 + 133663169 I a score=313148.000000 s hg38.chr12_KI270834v1_alt 64885 161 + 119498 aacttcaaccGTAAT---ACAtaggcagtgtg--------tacatgagtctggttctcagaataggagcctagggtggggacgtcaatttcagagtcactgacatgtggt------------gggacccgagtgaaccatccaggga----------------gagcccagcac----tgagttcaggtggaagaggaa------------------------------cgagc- s panTro5.chr12 127350947 161 + 137163284 aacttcaaccGTAAT---ACAtaggcagtgtg--------tacatgagtctggttctcagaataggagcctagggtggggacgtcaatttcagagtcactgacatgtggt------------gggacccgagtgaaccatccaggga----------------gagcccagcac----tgagttcaggtggaagaggaa------------------------------cgagc- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125702170 161 + 135337776 aacttcaaccGTAAT---ACAtaggcagtgtg--------tacatgagtctggttctcagaataggagcctagggtggggacgtcaatttcagagtcactgacatgtggt------------gggacctgagtgaaccatccaggga----------------gagcccagcac----tgagttcaggtggaagaggaa------------------------------cgagc- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8215147 160 - 8369578 aacttcagccgtaat---acataggcagtgtg--------tacatgagtctggttctcagaataggagcctagggtggggacgtcaatttcagagtcactgacatgtggt------------gggacccgagtgaaccatccaggga----------------gagcccagcac----tgagttcaggtggaagaggaa-------------------------------gagc- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97863031 161 + 106955855 aacttcagccataat---acataggcagtgtg--------tacatgagtctggttctcagaataggggccaagggtggggatgtcaatttcagagtcactgacacatggt------------gggacccgagtgaaccatccaggga----------------gagcccagcac----tgagttcaggtggaagaggaa------------------------------cgagc- i nomLeu3.chr10 C 0 C 0 s chlSab2.chr11 119230552 165 + 128539186 aacttcagccata-----acacaggcagtgtg--------tacctgagtctggttctcagaataggggcccagggtggggatgtcaatttcagagccactgacacatggtttgtaaagccatgggacctgagtgaaccatccaggga----------------gAGCCAAGCAC----TGAGTTCAGGT------GGAA------------------------------TGAGC- i chlSab2.chr11 C 0 I 1 s colAng1.NW_012116043v1 4607876 173 - 8658521 aacttcagccataat---acataggcagtgtg--------tacatgagtctggttctcagaataggggcccagggtggggatatcaatttcagagtcactgacacatgatttgtaaagccacgggacccgagtaaaccatccaggga----------------gagcccagcac----tgagttcaggtggaagaggaa------------------------------cgagc- i colAng1.NW_012116043v1 C 0 I 39 s canFam3.chr26 33153487 129 - 38964690 aacttcacctgtagc---aGATGGACTATGGGGGCCAACTtgtaggggtctggttctcagaataggggcccagggtggagatttcaattttagcatcactaacaGGCTTG------------GAGAGCC------ACCATCTGTGGG----------------GAG--------------------------------------------------------------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 833042 225 - 1116856 aaatccaaacgagatgtcagatgggcactggg--------taggtgagtctggttctaaacttaggagtctagtgtggaggtgccattttaggaaccgctgatatgtggtgtgaaaaccatgggga--tgactggacctggcaagggtgagagtgtgagaagtgaagacagtgcaggatgaattcaggcagaagaggaggaatgagaccaagagaccaagagaccaatgagagcc i dasNov3.JH568189 I 538 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e cerAty1.NW_012001186v1 12257579 1250 + 20526591 I e macNem1.NW_012010578v1 10635307 39 - 16319837 I e macFas5.chr11 128235658 798 + 137757926 I e rheMac8.chr11 123988252 819 + 133663169 I a score=175513.000000 s hg38.chr12_KI270834v1_alt 65046 116 + 119498 agagactgagagggcaGGCGG----AGCACGGGGAGC--------------------------------------GAGAGACTGAGA-----GGGCAGGCAGAGCCCCGGGAGGAA----------------------GAGACTGAGAG--------------------GGCAGGCAGAGCACAGGGAGCAAGTTCCTCTTTGTC s panTro5.chr12 127351108 154 + 137163284 agagactgagAGGGCAGGCGG----AGCACGGGGAGCGAGAGACTGAGAGGGCAGGCGGGGCCCCGGGAGCGAGTGAGAGACTGAGA-----GGGCAGGCAGAGCCCCGGGAGGAA----------------------GAGACTGAGAG--------------------GGCAGGCAGAGCACAGGGAGCAAGTTCCTCTTTGTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125702331 154 + 135337776 agagactgagagggcaGGCGG----AGCACGGGGAGCGAGAGACTGAGAGGGCAGGCGGGGCCCCGGGAGCGAGTGAGAGACTGAGA-----GGGCAGGCAGAGCCCCGGGAGGAA----------------------GAGACTGAGAG--------------------GGCAGGCAGAGCACAGGGAGCAAGTTCCTCTTTGTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8215307 120 - 8369578 agagattgagAGGGCAGGCGG----GGCCCCGGGAGT----------------------------------GAGTGAGAGACTGCGA-----GGGCAGGCGGAGCACGAGGAGCGA----------------------GAGACTGAGAG--------------------GGCAGGCAGAGCACAGGGAGCAAGTTCCTCTTTGTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97863192 48 + 106955855 -------------------------------------------------------------------------------------------------------------------a----------------------gagactgagag--------------------ggcaGGCAGAGCACAGGGAGCAAGTTCCTTTTTGTC i nomLeu3.chr10 C 0 C 0 s cerAty1.NW_012001186v1 12258829 116 + 20526591 AGAGACTGAGAGGGCAGGCGG----AGCGCGGGGAGCGAGAGACTGAGAG-------------------------------------------GGCAGGCGGAGCGCGGAGAGTGA----------------------GAGACTGAGAG--------------------GGCAGGCGGAGCACGGAGAGTGAGTTCCTCTTTGTC i cerAty1.NW_012001186v1 I 1250 C 0 s chlSab2.chr11 119230718 82 + 128539186 AGAGACTGAGAGGGCAGGTGG----AGCACAGGGAGC-----------------------------------------------------------------------------GA----------------------GAGACTGAGAG--------------------GGCAGGCGGAGCATGGGGAGTGAGTTCCTCTTTGTC i chlSab2.chr11 I 1 C 0 s colAng1.NW_012116043v1 4608088 150 - 8658521 AGAGACTGAGAGGGCAGGCGG----AGCACCGGGAGGGAGAAACTGAGAGGGCAGGCGGAGCACGGG----GAGGGAGACACTGAGA-----AGGCAGGCGGAGCACGGGGAGCGA----------------------GAGACTGAGAG--------------------GGCAGGCGGAGCACGGGGAGTGAGTTCCTCTTTGTC i colAng1.NW_012116043v1 I 39 C 0 s canFam3.chr26 33153616 106 - 38964690 --AGTGTGAGAAATCAGGTGAGTACAGGACTGGGTTC-----------------------------------------------AGG-----GAGAAGGTGGGG---AGTGAGCCA----------------------GAAGCTGAGAT--------------------GATAGGAGGAGAACCAGAAGCGAGTTCCTGTGTCTC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 833267 163 - 1116856 agagaccaagaaggcaggagg----ggaaccaggagC--------------------------------------GAGTCCTTGTCATCTCTAGGTAGGAGGGGAACCAGGAGTGATTCCTTGTCATCTCTAGGTAGGGGAACCAGGAGGGAGCTCCTCTTCACCTGTAGGTAGGAGGGGAACCAGGAGTGAGCTCCTCTTTATC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e macNem1.NW_012010578v1 10635307 39 - 16319837 I e macFas5.chr11 128235658 798 + 137757926 I e rheMac8.chr11 123988252 819 + 133663169 I a score=31017.000000 s hg38.chr12_KI270834v1_alt 65162 16 + 119498 TTTTGGGAGTCTTGGG s panTro5.chr12 127351262 16 + 137163284 TTTTGGGAGTCTTGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125702485 16 + 135337776 TTTTGGGAGTCTTGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8215427 16 - 8369578 TTTTGGGAGTCTTGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97863240 16 + 106955855 TTTTGGGAGTCTTGGG i nomLeu3.chr10 C 0 C 0 s cerAty1.NW_012001186v1 12258945 15 + 20526591 TCTC-GCAGTCTTGGG i cerAty1.NW_012001186v1 C 0 I 5 s chlSab2.chr11 119230800 15 + 128539186 TCTC-GCAGTCTTGGG i chlSab2.chr11 C 0 I 5 s colAng1.NW_012116043v1 4608238 15 - 8658521 TCTC-GCAGTCTTGGG i colAng1.NW_012116043v1 C 0 I 5 s dasNov3.JH568189 833430 15 - 1116856 TCTT-GCCATCTTGGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e canFam3.chr26 33153722 0 - 38964690 C e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e macNem1.NW_012010578v1 10635307 39 - 16319837 I e macFas5.chr11 128235658 798 + 137757926 I e rheMac8.chr11 123988252 819 + 133663169 I a score=24035.000000 s hg38.chr12_KI270834v1_alt 65178 30 + 119498 CTCCCTGCCAAGGGAGGGATCCCTCTCCCT s panTro5.chr12 127351278 30 + 137163284 CTCCCTGCCAAGGGAGGGATCCCTCTCCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125702501 30 + 135337776 CTCCCTGCCAAGGGAGGGATCCCTCTCCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8215443 30 - 8369578 CTCCCTGCCAAGGGAGGGATCCCTCTCCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97863256 30 + 106955855 CTCCCTGCCAAGGGAGGGATCCCTCTCCCT i nomLeu3.chr10 C 0 C 0 s dasNov3.JH568189 833445 5 - 1116856 ---------AAAtg---------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e canFam3.chr26 33153722 0 - 38964690 C e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e colAng1.NW_012116043v1 4608253 5 - 8658521 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e chlSab2.chr11 119230815 5 + 128539186 I e cerAty1.NW_012001186v1 12258960 5 + 20526591 I e macNem1.NW_012010578v1 10635307 39 - 16319837 I e macFas5.chr11 128235658 798 + 137757926 I e rheMac8.chr11 123988252 819 + 133663169 I a score=19665.000000 s hg38.chr12_KI270834v1_alt 65208 8 + 119498 tgttgaat s panTro5.chr12 127351308 8 + 137163284 tgttgaat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125702531 8 + 135337776 tgttgaat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8215473 8 - 8369578 tgttgaat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97863286 8 + 106955855 tgttgaat i nomLeu3.chr10 C 0 C 0 s cerAty1.NW_012001186v1 12258965 8 + 20526591 tgtcgaag i cerAty1.NW_012001186v1 I 5 C 0 s chlSab2.chr11 119230820 8 + 128539186 tgtcgaag i chlSab2.chr11 I 5 C 0 s colAng1.NW_012116043v1 4608258 8 - 8658521 tgtcgaag i colAng1.NW_012116043v1 I 5 C 0 s dasNov3.JH568189 833450 8 - 1116856 tgctgaag i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e canFam3.chr26 33153722 0 - 38964690 C e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e macNem1.NW_012010578v1 10635307 39 - 16319837 I e macFas5.chr11 128235658 798 + 137757926 I e rheMac8.chr11 123988252 819 + 133663169 I a score=208758.000000 s hg38.chr12_KI270834v1_alt 65216 59 + 119498 atccccaagaccatcccc---ggctccgtgacttgctaggaggactcgcaggactcagcatg s panTro5.chr12 127351316 59 + 137163284 atccccaagaccatcccc---agctccgtgacttgctaggaggactcgcaggactcagcatg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125702539 59 + 135337776 atccccaagaccatcccc---agctccgtgacttgctaggaggactcgcaggactcagcatg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8215481 59 - 8369578 atccccaagaccatcccc---ggctccgtgacttgctaggaggactcgcaggactcagcatg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97863294 59 + 106955855 atccccaagaccatcccc---ggctctgtgacttgctaggaggtctcgcaggactcatcatg i nomLeu3.chr10 C 0 C 0 s macNem1.NW_012010578v1 10635346 58 - 16319837 atccccaagaccat-ccc---agctctgtgactcgctgggaggactcgcaggactcagcatg i macNem1.NW_012010578v1 I 39 C 0 s cerAty1.NW_012001186v1 12258973 58 + 20526591 atccccaagaccat-ccc---agctctgtgactcgctgggaggactcgcaggactcagcatg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119230828 58 + 128539186 atccccaagaccat-ccc---agctctgtgactcgctgggaggactcgcaggactcagcatg i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4608266 58 - 8658521 atccccaagaccat-ccc---agctctgtgactcgctaggaggactcgcaggactcagcatg i colAng1.NW_012116043v1 C 0 C 0 s dasNov3.JH568189 833458 61 - 1116856 gtccccaagaccacccccccaggttctgtggtttgtcaggaggactcacagga-tcagcatg i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e canFam3.chr26 33153722 0 - 38964690 C e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e macFas5.chr11 128235658 798 + 137757926 I e rheMac8.chr11 123988252 819 + 133663169 I a score=465378.000000 s hg38.chr12_KI270834v1_alt 65275 129 + 119498 tggtcctgctcatggctgtgag-tcatt----acagcaaaaggacacagagcaacatcagcaga-gggaaaaagtgcat----ggg-ggaccctagggaagaccagtctcaagtct-cagagtcctctc------------tccggggagcca s panTro5.chr12 127351375 129 + 137163284 tggtcctgctcatggctgtgag-tcatt----acagcaaaaggacacagagcaacatcagcaga-gggaaaaagtgcat----ggg-ggaccctagggaagaccagtctcaagcct-cagagtcctctc------------cccggggagcca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125702598 129 + 135337776 tggtcctgctcatggctgtgag-tcatt----acagcaaaaggacacagagcaacatcagcaga-gggaaaaagtgcat----ggg-ggaccctagggaagaccagtctcaagcct-cagagtcctctc------------cccggggagcca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8215540 129 - 8369578 tggtcctgctcatggctgtgag-tcatt----acagcaaaacaacacagagcaacatcagcaat-gggaaaaagtgcat----ggg-ggaccctagggaagaccagcctcaagcct-cagagtcctctc------------cccggggagcca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97863353 129 + 106955855 cagtcctgctcatggctgtgag-tcatt----acagcaaaaggacacagagcaacatcagcaga-gggaaaaagtgcat----ggg-ggaccccagggaagaccagtctcaagcct-cagagtcctctc------------cctggggagcca i nomLeu3.chr10 C 0 C 0 s macNem1.NW_012010578v1 10635404 129 - 16319837 tggtcctgctcacgactgtgag-tcatt----acagcaaaaggacacagagcaacatcagcagc-gggaaaaggcacat----ggg-ggaccctggggaagaccagtctgaagcct-cggagtcctctc------------cccggggagtca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12259031 129 + 20526591 tggtcctgctcacgactgtgag-tcatt----acagcaaaaggacacagagcaacatcagcaga-gggaaaaggcacat----ggg-ggaccctggggaagaccagtctgaagcct-cggagtcctctc------------cccggggagtca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119230886 129 + 128539186 tggtcctgctcacgaccgtgag-tcatt----acagcagaaggacacagagcaacatcagcagc-gggaaaaggcacat----ggg-ggaccctggggaagaccagtctgaagcct-cagagtcctctc------------cccggggagtca i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4608324 129 - 8658521 tggtcttgctcacgactgtgag-tcact----acagcaaaaggacacagagcaacatcagcaga-gggaaaaggcacat----ggg-ggaccctggggaagaccagtctcaagcct-cggagtcctctc------------cccgggggatca i colAng1.NW_012116043v1 C 0 C 0 s canFam3.chr26 33153722 143 - 38964690 TGGCAGtacacacagctgtgatctaatt----acagc---aggacacgaagcaccatcagcaaaggggaagaggcacatgccgggg-gaggtctgggga--gccaggcacaggcttccagaactctcttctatggcagtaactatggcagtca i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 833519 133 - 1116856 taatcatactcacagctgtgat-ttatttatgttagtgaaagggtaccaagtactaccagtgaa-gggaaaagacatat----gggtgaagtctggggaaaaccaggcacaagctt-cc-agttttctc------------ccagtggaCCta i dasNov3.JH568189 C 0 I 2866 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e macFas5.chr11 128235658 798 + 137757926 I e rheMac8.chr11 123988252 819 + 133663169 I a score=619275.000000 s hg38.chr12_KI270834v1_alt 65404 190 + 119498 cacaggacatgcttaa-tcccccaacattgagttgtggcaactcgtgtgaagtactgcccaccaggggagctagttggagactcagtgctccgggatttcc--ttggggctgctcat-gtaggcacct-ctacctggcatgtgccaaaatcccggatgcccggagggagagcgggtagtcagcatagaatacgtt s panTro5.chr12 127351504 190 + 137163284 cacaggacatgcttaa-tcccccaacattgagttgtggcaactcgtgtgaagtactgcccaccaggggagctagttggagactcagtgctccgggatttcc--ttggggctgctcat-gtaggcacct-ctacctggcatgtgccaaaatcccggatgcccggagggagagcgggtagtcagcatagaatatgtt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125702727 190 + 135337776 cacaggacatgcttaa-tcccccaacattgagctgtggcaactcgtgtgaagtactgcccaccaggggagctagttggagactcagtgctccgggatttcc--ttggggctgctcat-gtaggcacct-ctacctggcatgtgccaaaatcccggatgcccggagggagagcgggtagtcagcatagaatatgtt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8215669 189 - 8369578 cacaggacatgcttaa-tcccccaacatcgagttgtggcaactcgtgtgaagtactgcccaccaggggagctagttggagactcagtgctccgggatttcc--ttggggctgctcat-gtaggcacct-ctacctggcatgtgccaaaatcccggatgcccggagggagagcgggtagtcagca-agaatacgtt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97863482 190 + 106955855 cacaggacatgcttaa-tcccccaacatcgagttgtggcaactcgtgtgaagtaccgcccaccaggggagctagttggagactcagtgctcagggattttc--ttggggctgctcgt-gtaggcagct-ctacctggcatgtgccaaaatcccggatgcccggagggagagcgggtaatcagcataggatacgtt i nomLeu3.chr10 C 0 C 0 s macNem1.NW_012010578v1 10635533 188 - 16319837 cacaggacacgcttaa-tcccccaacatcgagttgtggcaactc-tgtgaagtactgcccaccaggggagctagttggagactcagtgctctgggattttc--ttgggg-tgctcat-gtaggcacct-ctacctggcatgtgccaaaatcctggatgcccagagggaaagcgggtagtcagcacagaatatgtt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12259160 170 + 20526591 cacaggacacgcttaa-tcccccaacatcgagtcgtggcaactc-tgtgaagtactgcccaccaggggagctagttggagactcagtgctgtgggattttc--ttgggg-TGCT--------------------TTGCATGTGCCAAAATCCCGGATGCCCGGAGGGAAAGCGGGTAGTCAGCACAGAATATGTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119231015 188 + 128539186 cccaggacacgcttaa-tcccccaacatcgagttgtggcaactc-tgtgaagtactgcccagcaggggagctagttggagactcagtgctgtgggattttc--ttgggg-tgctcat-gtaggcacct-ctacctggcatgtgccaaaatcccggatgcccggagggaaagcgggtagtcagcacagaatatgtt i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4608453 188 - 8658521 cacaggacacgcttaa-tcccccaacatcgagttgtggcaactc-tgtgaagtactgcccaccaggggagctagttggagactcagtgctctgggattttc--ttgggg-tgctcat-gtaggcacct-ctacctggcatgtgccaaaatcccagatgcccggagggagagcgggtagtcagcacagaagatgtt i colAng1.NW_012116043v1 C 0 C 0 s canFam3.chr26 33153865 195 - 38964690 cataggacatgtttaactcctcccgcatctgattctgacaacctttgtgaagtgccatctcctgggaaagcccattagaaactcagaacccaagggtgttcagtgggggctggtcacggtgggcacctgctgcctggcaccaacccacattccagaatcccagaggggaagcaggtggtcagtataaaccacact i canFam3.chr26 C 0 I 1585 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 833652 2866 - 1116856 I e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e macFas5.chr11 128235658 798 + 137757926 I e rheMac8.chr11 123988252 819 + 133663169 I a score=180622.000000 s hg38.chr12_KI270834v1_alt 65594 66 + 119498 gcatacccaagcagtgtgggca----------caat-gttaggctgttcttgcattgctataaagaaataccttaga s panTro5.chr12 127351694 66 + 137163284 gcatacccaagcagtgtgggca----------caat-gttaggctgttcttgcattgctataaagaaataccttaga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125702917 66 + 135337776 gcatacccaagcagtgtgggca----------caat-gttaggctgttcttgcattgctataaagaaataccttaga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8215858 66 - 8369578 gcatacccaagcagtgtgggca----------caat-gttaggctgttcttgcattgctataaagaaataccttaga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97863672 66 + 106955855 gcatacacaagcagtgtgggca----------cagt-gttgggctgttctcgcatcgctataaagaaataccttaga i nomLeu3.chr10 C 0 C 0 s macNem1.NW_012010578v1 10635721 77 - 16319837 gcatacacaagcagtgtaTACAACGACATACACAATGGCtaggttgttcttgcctggctataaagaaataccttaga i macNem1.NW_012010578v1 C 0 I 1 s cerAty1.NW_012001186v1 12259330 74 + 20526591 GCGTACCCAAGCAGTGTATACA---ACATACACAATGGCtaggctgttcttgcattgctataaagaaataccttaga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119231203 74 + 128539186 gcatacacaagcagtgtaaaca---ACATACACAATGGCCaggctgttcttgcattgctataaagaaataccttaga i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4608641 67 - 8658521 gcatacacaagcagtgtgggca----------caatggttaggctgttcctgcattgctataaagaaataccttaga i colAng1.NW_012116043v1 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 833652 2866 - 1116856 I e canFam3.chr26 33154060 1585 - 38964690 I e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e macFas5.chr11 128235658 798 + 137757926 I e rheMac8.chr11 123988252 819 + 133663169 I a score=13976.000000 s hg38.chr12_KI270834v1_alt 65660 7 + 119498 ctggttt s panTro5.chr12 127351760 7 + 137163284 ctggttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125702983 7 + 135337776 ctggttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8215924 7 - 8369578 ctggttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97863738 7 + 106955855 ctggttt i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128236456 6 + 137757926 -ctgata i macFas5.chr11 I 798 I 1 s macNem1.NW_012010578v1 10635799 6 - 16319837 -tggata i macNem1.NW_012010578v1 I 1 I 1 s cerAty1.NW_012001186v1 12259404 7 + 20526591 ctggata i cerAty1.NW_012001186v1 C 0 I 1 s chlSab2.chr11 119231277 7 + 128539186 ctggata i chlSab2.chr11 C 0 I 1 s colAng1.NW_012116043v1 4608708 7 - 8658521 ctggata i colAng1.NW_012116043v1 C 0 I 1 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 833652 2866 - 1116856 I e canFam3.chr26 33154060 1585 - 38964690 I e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I e rheMac8.chr11 123988252 819 + 133663169 I a score=23805.000000 s hg38.chr12_KI270834v1_alt 65667 5 + 119498 tttat s panTro5.chr12 127351767 5 + 137163284 tttat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125702990 5 + 135337776 tttat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8215931 5 - 8369578 tttat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97863745 5 + 106955855 tttgt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123989071 5 + 133663169 tttat i rheMac8.chr11 I 819 C 0 s macFas5.chr11 128236463 5 + 137757926 tttat i macFas5.chr11 I 1 C 0 s macNem1.NW_012010578v1 10635806 5 - 16319837 tttat i macNem1.NW_012010578v1 I 1 C 0 s cerAty1.NW_012001186v1 12259412 5 + 20526591 tttat i cerAty1.NW_012001186v1 I 1 C 0 s chlSab2.chr11 119231285 5 + 128539186 tttat i chlSab2.chr11 I 1 C 0 s colAng1.NW_012116043v1 4608716 5 - 8658521 tttat i colAng1.NW_012116043v1 I 1 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 833652 2866 - 1116856 I e canFam3.chr26 33154060 1585 - 38964690 I e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e saiBol1.JH378194 452360 700 - 9212255 I e calJac3.chr9 114807862 667 + 124281992 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I a score=62607.000000 s hg38.chr12_KI270834v1_alt 65672 15 + 119498 aaagaaaagaggttc s panTro5.chr12 127351772 15 + 137163284 aaagaaaagaggttc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125702995 15 + 135337776 aaagaaaagaggttc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8215936 14 - 8369578 -aagaaaagaggttc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97863750 15 + 106955855 aaagaaaagaggctc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123989076 13 + 133663169 aaagaaa--aggttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128236468 13 + 137757926 aaagaaa--aggttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10635811 13 - 16319837 aaagaaa--aggttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12259417 15 + 20526591 aaagaaaagaggttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119231290 13 + 128539186 aaagaaa--aggttt i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4608721 15 - 8658521 aaagaaaagaggttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114808529 15 + 124281992 agaaaaaggaacttt i calJac3.chr9 I 667 C 0 s saiBol1.JH378194 453060 15 - 9212255 agaaaaaagaacttt i saiBol1.JH378194 I 700 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 833652 2866 - 1116856 I e canFam3.chr26 33154060 1585 - 38964690 I e otoGar3.GL873618 4299829 1691 + 7922563 I e aotNan1.NW_018491581v1 1573597 702 + 5364348 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I a score=142834.000000 s hg38.chr12_KI270834v1_alt 65687 21 + 119498 atgtggctcacagtgccgcaa s panTro5.chr12 127351787 21 + 137163284 atgtggctcacagtgccgcga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125703010 21 + 135337776 atgtggctcacagtgccgcaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8215950 21 - 8369578 atgtggctcacagtgccccag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97863765 21 + 106955855 atgtggctcacagtgccgcag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123989089 21 + 133663169 atgtggctcacagtgccgcag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128236481 21 + 137757926 atgtggctcacagtgccgcag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10635824 21 - 16319837 atgtggctcacagtgccgcag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12259432 21 + 20526591 atgtggctcacagtgccgcag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119231303 21 + 128539186 atgttgctcacagtgccgcag i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4608736 21 - 8658521 atgtggctcacagtgccacag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114808544 21 + 124281992 atgtggataacagttatgcag i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 453075 21 - 9212255 atgtggataacagttctgcag i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1574299 21 + 5364348 atgtggataacagttccacag i aotNan1.NW_018491581v1 I 702 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 833652 2866 - 1116856 I e canFam3.chr26 33154060 1585 - 38964690 I e otoGar3.GL873618 4299829 1691 + 7922563 I e cebCap1.NW_016107484v1 2867000 779 + 4466143 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I a score=2647164.000000 s hg38.chr12_KI270834v1_alt 65708 325 + 119498 gctgtacaggaagcatggtgctgatttctggggaggcctcaggaaacttacagtcatggcagaaggtgaagggggagcaggcgcgtcccatggccagagtgggagcaaggttgggggaggggccacacactttcaaacaaccagatctcacgagaactcactcgcgctcacaagaacagcactaagaggatggtgctaaaccatccatgagagatctgcccccatcatccagtcacctcccaccgggccccacctgtaacactggggatcacaattcaacctgagatttggtgcggacgcagatccaaaccacatcccatattgg s panTro5.chr12 127351808 325 + 137163284 gctgtacaggaagcatggtgctgatttctggggaggcctcaggaaacttacagtcatggcagaaggtgaagggggagcaggcacctcccatggccagagtaggagcaaggttgggggaggggccacacactttcaaacaaccagatctcacgagaactcactcacgctcacaagaacagcactaaggggatggtgctaaaccatccatgagagatctgcccccatcatccagtcacctcccaccaggccccacctgtaacactggggattacaattcaacctgagatttggtgtggacgcagatccaaaccacatcccatattgg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125703031 325 + 135337776 gctgtacagcaagcatggtgctgatttctggggaggcctcaggaaacttacagtcatggcagaaggtgaagggggagcaggcacgtcccatggccagagtaggagcaaggttgggggaggggccacacactttcaaacaaccagatctcacgagaactcactcacgctcacaagaacagcactaaggggatgttgctaaaccatccatgagagatctgcccccatcatccagtcacctcccaccaggccccacctgtaacactggggattacaattcaacctgagatttggtgtggacgcagatccaaaccacatcccatattgg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8215971 324 - 8369578 gctgtacaggaagcatggtg-tgatttctggggaggcctcaggaaacttacagtcatggcagaaggtgaagggggagcaggcacgtcccatggccagagtaggagcaaggttgggggaggggccacacactttcaaacaaccagatctcacgagaactcactcacgctcacaagaacagcaccaaggggatggtgctaaaccatccatgagagatctgcccccatcatccagtcacctcccaccaggccccacctctaacactggggattacaattcaacctgagatttggtgtggacgcagatccaaaccacatcccatattgg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97863786 325 + 106955855 gctgtacaggaagcatggtgctgatttcttcggaggcctcaggaaacttacggtcatggcagaaggtgaaggggaagcaggcacgtcccatggccagagtaggagcaaggttgggggaggggccacgcactttcaaacaaccagatctcacgagaactcactcacgatcacaagaacagcaccaaggggatggtgctaaaccattcatgagagatctgcctctatgatccagtcacctcccaccaggccccacctccaacactggggattacaattcaacatgagatttgttggggacgcagatccaaaccacatcccatgttgg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123989110 325 + 133663169 gctgtacaggaagcatggtgctgatttctggggaggcctcaggaaacttacagtcacggcagaaggtgaagggggagcaggcacgtcccatggccagagtaggagcaaggctaggggaggggctacgcactttcaaacaaccagatctcatgagaactcactcacgctcacaagaacagcaccaaggggatggagctaaaccattcatgagaaatctgcccccatgatccagtcacctcccaccaggccccacctccaacactggggattacaattcgacatgagatttggtggggacacaggtccaaaccacatcCcacgttgg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128236502 325 + 137757926 gctgtacaggaagcatggtgctgatttctggggaggcctcaggaaacttacagtcacggcagaaggtgaagggggagcaggcacgtcccatggccagagtaggagcaaggctaggggaggggctacgcactttcaaacaaccagatctcatgagaactcactcacgctcacaagaacagcaccaaggggatggagctaaaccattcatgagaaatctgcccccatgatccagtcacctcccaccaggccccacctccaacactggggattacaattcaacatgagatttggtggggacacaggtccaaaccacatcCcacgttgg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10635845 325 - 16319837 gctgtacaggaagcatggtgctgatttctggggaggcctcaggaaacttacagtcacggcagaaggtgaagggggagcaggcacgtcccatggccagagtaggagcaaggctaggggaggggctacgcactttcaaacaaccagatctcatgagaactcactcacgctcacaagaacagcaccaaggggatggagctaaaccattcatgagaaatctgcccccatgatccagtcacctcccaccaggccccacctccaacactggggattacaattcgacatgagatttggtggggacacaggtccaaaccacatcCcacgttgg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12259453 325 + 20526591 gctgtacaggaagcacagtgctgatttctggggaggcctcaggaaacttacagtcagggcagaaggtgaggggggagcaggcacgtcccatggccagagtaggagcaaggctaggggaggggctacgcactttcaaacaaccagatctcatgagaactcactcacgctcacaagaacagcaccaaggggatggagctaaaccattcatgagaaatctgcccccatgatccagtcacctcccaccaggccccacctccaacactggggattacagttcgacatgagatttggtggggacacaggtccaaaccacatcCCATGTtgg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119231324 324 + 128539186 gctgtacaggaagcatggtgctgatttct-gggaggcctcaggaaacttacagtcacagcagaaggtgaagggggagcaggcacgtcccgtggccagagtaggagcaaggctaggggaggggctacgcactttcaaacaaccagatctcacgagaactcactcacgctcgcaagaacggcaccaaggggatggtgctaaaccattcatgagaaatctgccgccatgatccagtcacctcccaccaggccccacctccaacgctggggattacaattcgacatgagatttggtggggacacaggtccaaaccacatcCCATGTtgg i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4608757 325 - 8658521 gctgtaccggaagcatggtgctgatttccggggaggcctcaggaaacttacagtcacggcagaaggtgaagggggagcaggcgcgtcccatggccagagtaggagcaaggctaggggaggggctgcgcactttcaaacaaccagatctcatgagaactcactcacgctcacaagaacagcaccaaggggatggtgctaaaccattcatgagaaatctgcccccacgatccagtcacctcccaccaggccccacctccaacactggggattacaattcgacatgagatttggtgggggcacagagccaaaccacatcccacgttgg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114808565 314 + 124281992 gctgtgcagg-agcatggtgctgatttctgtggaggcctctggaaacttacagtcaaggcagaaggtgaagtgggagtgggcacatcacctggccagcgtagtggcaaggttgggggaggtgccacacgcttttcaacaaccagatctcatgagaactccctccttctcacaagagcagcaccaagggggtgatgctaaaccattcaagagaaatctgcccccatga----------tcccgccaggccccatctccaacactggagatgacagttccacatgagatttggtggggacacagatccaaaccatgtcccatgttgg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 453096 312 - 9212255 gctatacaggaagcatggtgctgatttctggggaggcctccagaaacttacagtcaaggcagaatgtgaagcaggagcaggcacatcccctggccagcgtagcggcaaggttgggggaggtgccccacgcttttccacaaccagatctcgtgaggactccctc---ctcacaagagcagcaccgaggggataatgctaagccattcgagagaaacctgcccccatga----------tcctgccaggccccgtctccaacactggaggtgacagttccgcgtgaggtttggtggggacacagatccacaccgtatcccatgctgg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2867779 315 + 4466143 gctgtacaggaagcatggtgctgatttctggggaggcctccagaaacttacagtcaaggcagaaggtgatgcaggagcaggcacatgccctggccagcgtggcggcaaggttgggggaggtgccacacgcttttccacaaccagatctcatgagaactccctccttctcacaagagcagcaccagggggatgacgctaaaccattcgagagaaacctgtccccgtga----------tcccgccaggccccgtctccaacactgggggtgagagttccacgtgaggtttggtggggacacagatccacactgtatcccatgctgg i cebCap1.NW_016107484v1 I 779 C 0 s aotNan1.NW_018491581v1 1574320 315 + 5364348 gctgtacaggaagcatggtgctgatttctggggaggcctccggaaacttacagtcaaggcagaaggtgaagcgggagcaggcacatcacctggccagcgtagtggcaaggttgggggaggtgccacatgcttttcaacagccagatctcatgagaactccctccttctcacgagagcagcaccaaggggatgatgctgaactatttaagagaaatctgcccccgtga----------tcctgccaggccccatctccaacactggagatgacagttccacgtgagatttggcggggacacagatccaaaccgtaccccatgttga i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 833652 2866 - 1116856 I e canFam3.chr26 33154060 1585 - 38964690 I e otoGar3.GL873618 4299829 1691 + 7922563 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I a score=152749.000000 s hg38.chr12_KI270834v1_alt 66033 20 + 119498 gccactcttatcagtgaat--c s panTro5.chr12 127352133 20 + 137163284 gccactcttgtcagtgaat--c i panTro5.chr12 C 0 C 0 s panPan2.chr12 125703356 20 + 135337776 gccactcttgtccgtgaat--c i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8216295 20 - 8369578 gccactcttatcagtgaat--c i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97864111 20 + 106955855 gccgctcttatcagtgaat--c i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123989435 20 + 133663169 gccactcttatcagtgaat--c i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128236827 20 + 137757926 gccactcttatcagtgaat--c i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10636170 20 - 16319837 gccactcttatcagtgaat--c i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12259778 20 + 20526591 gccactcttatcagtgaat--c i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119231648 20 + 128539186 gccactcttatcagtgaat--c i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4609082 20 - 8658521 gccactcttagcagtgaat--c i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114808879 19 + 124281992 gccactcttatcagtgaat--- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 453408 19 - 9212255 gccactcttaccagtgaat--- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2868094 20 + 4466143 gccactcttatcagtgaatc-- i cebCap1.NW_016107484v1 C 0 I 14 s aotNan1.NW_018491581v1 1574635 20 + 5364348 gccactcttatcagtgaat-c- i aotNan1.NW_018491581v1 C 0 I 14 s otoGar3.GL873618 4301520 16 + 7922563 gctaccctcagcagtg------ i otoGar3.GL873618 I 1691 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 833652 2866 - 1116856 I e canFam3.chr26 33154060 1585 - 38964690 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I a score=129470.000000 s hg38.chr12_KI270834v1_alt 66053 26 + 119498 ggggaggaagctcttaaggaaactaa s panTro5.chr12 127352153 26 + 137163284 ggggaggaagctcttaaggaaactaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125703376 26 + 135337776 ggggaggaagctcttaaggaaactaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8216315 26 - 8369578 ggggaggaagctgttaaggaaactaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97864131 26 + 106955855 ggggaggaagcgcttaagaaatctaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123989455 26 + 133663169 ggggagaaagcccttcaggaatctaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128236847 26 + 137757926 ggggagaaagcccttcaggaatctaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10636190 26 - 16319837 ggggagaaagcccttcaggaatctaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12259798 26 + 20526591 ggggagaaagcccttcaggaatctaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119231668 26 + 128539186 ggggagaaagcccttcaggaatctaa i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4609102 26 - 8658521 ggggagaaagcccttcaggaatctaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114808898 15 + 124281992 ----------cccttcagggatcta- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 453427 15 - 9212255 ----------cccttcagagatcta- i saiBol1.JH378194 C 0 C 0 s otoGar3.GL873618 4301536 23 + 7922563 ---gagggagccctcctgaagtctaa i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 833652 2866 - 1116856 I e canFam3.chr26 33154060 1585 - 38964690 I e aotNan1.NW_018491581v1 1574655 14 + 5364348 I e cebCap1.NW_016107484v1 2868114 14 + 4466143 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I a score=1248114.000000 s hg38.chr12_KI270834v1_alt 66079 165 + 119498 gttcccaggtg----------------------------cctttcagaggtgagcagcc-gtggcctgccacgttaactcttccctgcacaGGAGAACGTCAGA-GATGGCA-TAAAATGTATTGCATAATTTGAAACGGCGTAGATATAGGAAAAAAGAAGTCCACGTAGCcagggtttctcg--actgc-gtgccgt s panTro5.chr12 127352179 165 + 137163284 gttcccaggtg----------------------------cctttcagaggtgagcagcc-gtggcctgccacgttaactcttccctgcacaGGAGAACGTCAGA-GATGGCA-TAAAATGTATTGCATAATTTGAAACGGCGTAGATATAGGAAAAAAGAAGTCCACGTAGCcagggtttctcg--accac-gtgccgt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125703402 165 + 135337776 gttcccaggtg----------------------------cctttcagaggtgagcagcc-gtggcctgccacgttaactcttccctgcacaGGAGAACGTCAGA-GATGGCA-TAAAATGTATTGCATAATTTGAAACGGCGTAGATATAGGAAAAAAGAAGTCCACGTAGCcagggtttctcg--accac-gtgccgt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8216341 165 - 8369578 gttcccaggtg----------------------------cctttcagagg-gagcagcc-gtggccagccacgttaactcttccctgcacaGGAGAACGTCAGA-GATGGCATTAAAATGTATTGCATAATTTGAAACGGCGTAGATATAGGAAAAAAGAAGTCCACGTAGCcagggtttcttg--accgc-gtgccgt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97864157 166 + 106955855 gttcccaggtg----------------------------cctttcagaggtgagcagcc-gtggcctgacatgttaacccttccctgcacaGGAGAACGTCAGA-GATGGCATTAAAATGTATTGCATAATTTGGAACGGCATAGATATGGGAAAAAAGAAGTCCACGTAGCcagggtgtctcg--accgc-gtgccat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123989481 194 + 133663169 gttcccaggtgccagctctgggcccacctggtaagtagaccgttcagaggtgagcagct-gtggcctgccacgttaactcttccctgcacaGGAGAACGTCAGG-GATGGCGTTAAAATGTATTACATAATTTGGAACATTGTAGACATAGGAAAGAAGAAGTCCATGTAGCcagggtttcttg--accac-gtgctat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128236873 194 + 137757926 gttcccaggtgccagctctgggcccacctggtaagtggaccgttcagaggtgagcagct-gtggcctgccacgttaactcttccctgcacaGGAGAACGTCAGG-GATGGCGTTAAAATGTATTACATAATTTGGAACATTGTAGACATAGGAAAGAAGAAGTCCACGTAGCcagggtttcttg--accac-gtgctat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10636216 191 - 16319837 gttcccaggtgccagctctgggcccacctggtaagtggaccgttcagaggtgagcagct-gtggcctgccacgttaactcttccctgcac---aGAACGTCAGA-GATGGCGTTAAAATGTATTACATAATTTGGAACATTGTAGACATAGGAAAGAAAAAGTCCACGTAGCcagggtttcttg--accac-gtgctat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12259824 194 + 20526591 gttcccaggtgccagccctgggtccacctggtaagtgggcctttcagaggtgagcagct-gtggcctgccacgttaactcttccctgcacaGGAGAACGTCAGA-GATGGCGTTAAAATGTATTACATAATTTGGAACATTGTAGACATAGGAAAGAAGAAGTCCACGTAGCcagggtttctcg--accac-gtgctat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119231694 194 + 128539186 gttcccaggtgccagctctgggcccacctggtaagtgggcctttcagaggtgagcagct-gtggcctgccacgttaactcctccttgcacaGGAGAACGTCAGA-GATGGCGTTAAAATGTATTACATAATTTGGAACGGCGTAGACACAGGAAAGAAGAAGTCCACGTAGCcagggtttctcg--gccac-gtgctat i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4609128 196 - 8658521 gttcccaggtgccagctctgggtccacctggtgagtgggcctttcagaggtgagcagct-gtggcctgccacgttaactcttccctgcacaGGAGAACGTCAGA-GAGGGCGTTAAAATGTATTACATAATTTGGAACGGCGCAGACATGGGAAAGAAGAAGTCCACGTAGCcaggatttctcgacaccac-gtgctgt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114808913 176 + 124281992 gtacccaggcgccagccctgggc----------------cctttcagaggtgagcggcc-gtggcctgccacgttaacacttccctgcacGGGAGAACGTTGGA-GACTGCATCCAAACGTATTG-GTAATTTGAAATGGCATAGATACAGGAAAAGAGCAGTCCACACAGCCATGGGTT-TCG--GCCGC-ATGctgt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 453442 119 - 9212255 gttcccaggcgccagccctgggc----------------cCT--------------------------------------TTCCCTGCACAGGAG---------------------AACTTGTTG-GTAATTTGAAATGGCATAGATATAGGAAAAAAACAGTCCACACAGCCGTGGGTT-TCA--GCCAC-ATGctgt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2868128 176 + 4466143 gttcccaggcaccagccccgggt----------------cctttcagaggtgagcagcc-gtggcctgccgcgttaacgcttccctgcacaGGAGAACGTCGGA-GACTGCATCCAAATGTATTG-GTAATTTGAAATGGCATAGATATAGGAAAAAAGCTGTCCACACAGCCGTGGGTT-TCG--GCCGC-ATGctgt i cebCap1.NW_016107484v1 I 14 C 0 s aotNan1.NW_018491581v1 1574669 176 + 5364348 gttcccaggtgccagccctgggc----------------cctttcagaggtgagcgact-gtggcctgccacgttaatgcttccctgcacaGGAGAACGTCAGA-GACTGCATCCAAACGTATTG-GTAATTTGAAATGGCATAGATATAGGAAAAGAGCAGTCCACACAGCCATGGGTT-TCA--GCCGC-ATGCCGt i aotNan1.NW_018491581v1 I 14 C 0 s otoGar3.GL873618 4301559 189 + 7922563 -ttcctagacaccagcac-aggcccacctgaggagcaggcctttcaaaggtgagcagcctggggcctgccaggttaactctttcctacacaGGAAAACATCAGACAATTTAATAAAAACAT-----ATGATGTGAAACGGTATAGATATAGGGAA-AAGAAGTCTAACTAGTCAGAGCTTCTCA--GTTGCAGCATGAC i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 833652 2866 - 1116856 I e canFam3.chr26 33154060 1585 - 38964690 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I a score=165735.000000 s hg38.chr12_KI270834v1_alt 66244 27 + 119498 tgacatttggggctgggctgttc----tttg s panTro5.chr12 127352344 27 + 137163284 tgacatttggggctgggctgttc----tttg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125703567 27 + 135337776 tgacatttggggctgggctgttc----tttg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8216506 27 - 8369578 tgacatttgggtctggactgttc----tttg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97864323 27 + 106955855 tgacacttgggtctgggctgttc----tttc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123989675 23 + 133663169 tgacatttgggtctgggttgttc-------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128237067 23 + 137757926 tgacatttgggtctgggttgttc-------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10636407 23 - 16319837 tgacatttgggtctgggttgttc-------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12260018 23 + 20526591 tgacatttgggtctgggttgttc-------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119231888 25 + 128539186 tgacatttgggtctgggtggttctt------ i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4609324 25 - 8658521 tgacgtttgggtctgggttgttc--tt---- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114809089 27 + 124281992 tggcatctgggtctgggctgttc----tttg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 453561 27 - 9212255 tggcatctgggtctgggctgttc----tttg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2868304 27 + 4466143 tggcatctgggtctgggctgttc----tttg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1574845 27 + 5364348 tggcatctgggtctgggctattc----tttg i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4301748 25 + 7922563 TGACACT--GTACTGGGCAGCAG----CCTG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33155645 26 - 38964690 tgacatcagtggcaggggagtct----ttg- i canFam3.chr26 I 1585 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 833652 2866 - 1116856 I e manLeu1.NW_012103587v1 559388 2956 + 6255621 I a score=2977002.000000 s hg38.chr12_KI270834v1_alt 66271 352 + 119498 ttgtggtggggctctcctgggcactgtgggaggttcagcagcatccctggccttgacctattagatgccagtagcaacctccc-----------------------ttgcaacaagcagaaatatctccagacatggcccagtgtttcct--g---ggggcaaa-----tc---ccagctgagaatccctgCTTCGGAGTTACAGGCAAGTGAGGCCTCCTCATGCTCTGCATGCT-CCCTGTGATGCTCACGGTCATCCTCCC--AGGCGAGCTGGCGGCATCTAGGATCCCCGTTTGACAGAC-A-GGAGCTGGAGGCTCTAAGGGCTTGCCACGAGGTGGCAGGGAGCCTCGGGTCTCA-GGTCAGGCCCACACGC-----TGCTCTCTGGACTCA s panTro5.chr12 127352371 352 + 137163284 ttgtggtggggctctcctgggcactgtgggaggttcagcagcatccctggccttgacctattagatgccagtagcaacctccc-----------------------ttgcaacaagcagaaatatctccagacatggcccagtgtttcct--g---ggggcaaa-----tc---ccagctgagaatccctgCTTCGGAGTTACAGGCAAGTGAGGCCTCCTCATGCTCTGTATGCT-CCCTGGGATGCTCACGGTCATCCTCCC--AGGTGAGCTGGCGGCATCTAGGATCCCCGTTTGACAGAC-A-GGAGCTGGAGGCTCTAAGGGCTTGCCACGAGGTGGCACGGAGCCTCGGGTCTCA-GGTCAGGCCCACACGC-----TGCTCTCTGGACTCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125703594 352 + 135337776 ttgtggtggggctctcctgggcactgtgggaggttcagcagcatccctggccttgacctattagatgccagtagcaacctccc-----------------------ttgcaacaagcagaaatatctccagacatggcccagtgtttcct--g---ggggcaaa-----tc---ccagctgagaatccctgCTTCGGAGTTACAGGCAAGTGAGGCCTCCTCATGCTCTGTATGCT-CCCTGGGATGCTCACGGTCATCCTCCC--AGGTGAGCTGGCGGCATCTAGGATCCCCGTTTGACAGAC-A-GGAGCTGGAGGCTCTAAGGGCTTGCCACGAGGTGGCAGGGAGCCTCGGGTCTCA-GGTCAGGCCCACACGC-----TGCTCTCTGGACTCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8216533 352 - 8369578 ttgtggtggggctctcctgggcactgtgggaggttcagcagcatccctggccttgacctattagatgccagtagcaacctccc-----------------------ttgcaacaagcagaaatatctccagacatggcccagtgtttcct--g---ggggcaaa-----tc---ccagctgagaatccctgCTTCAGAGTTACAGGCAAGTGAGGCCTCCTCATGCTCTGTATGCT-CCCTGTGATGCTCACGGTCATCCTCCC--AGGCGAGCTGGCGGCATCTAGGATCCCCGTTTGACAGAC-A-GGAGCTGGAGGCTCTAAGGGCTTGCCACGAGGTGGCAGGGAGCCTCGGGTCTCA-GATCAGGCCCACACAC-----TGCTCTCTGGACTCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97864350 359 + 106955855 ttgtggtggggctctcctgggcactgtgggaggttcagcagcacccctggccttgacctgttagatcccagtagcaatctccc----tgc------------caagttgcaacaagcagaaatatctccagacattgcccagtatttcct--g---ggggcaaa-----tc---ccagctgagaatccctgCTTCAGAGTTACAGGCAAGCGAGGCCTCCTCATGCTCTGTATGCTCCCCTGTGATGCTCTTGGTCATCCTCCC--GGGCGAGCTGGCAGCATCTAGGATCCCCGTTTGACAGAC-A-GGAGCTGGAGGCTCTAAGGGCTTCCCACGAGGCGGCAGGGAGCCTC-GGTCTCA-GGTCAGGCCCACACGC-----TGCTCTCTGGACTCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123989698 350 + 133663169 ttgtggtggggctctcctaggcactctgggacgttcagcagcatccctggccttgacctattagatgccagtagcaatctccc----tgc------------caagttgcaacaagcagaaatatctccagacattgcccagtatttcct--g---ggggtaaa-----tc---ccagctgagaatccctgCTTCCGAGTTACAGGCAAGTGAGGCTTCCTCATGCTCTGTATGCTCACCTGTGATGCTCACATTCATCCTCCC--AGGTGAGCTGGCAGCATCTAGGATCCCCATTTGACAGAC-A-----------GCTCTAAGGGCTTCCCATGAGGCGGCAGGAAGCCTCGGGTCTCA-AGTCAGGCCCACACGC-----TGCTCTCTGGACTCG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128237090 350 + 137757926 ttgtggtggggctctcctaggcactctgggacattcagcagcatccctggccttgacctattagatgccagtagcgatctccc----tgc------------caagttgcaacaagcagaaatatctccagacattgcccagtatttcct--g---ggggtaaa-----tc---ccagctgagaatccctgCTTCCGAGTTACAGGCAAGTGAGGCTTCCTCATGCTCTGTATGCTCACCTGTGATGCTCACGTTCATCCTCCC--AGGTGAGCTGGCAGCATCTAGGATCCCCATTTGACAGAC-A-----------GCTCTAAGGGCTTCCCATGAGGCGGCAGGAAGCCTCGGGTCTCA-AGTCAGGCCCACACGC-----TGCTCTCTGGACTCG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10636430 350 - 16319837 ttgtggtggggctctcctaggcactctgggacgttcagcagcatccctggccttgacctattagatgccagtagcaatctccc----tgc------------caagttgcaacaagcagaaatatctccacacattgcccagtatttcct--g---ggggtaaa-----tc---ccagctgagaatccctgCTTCCGAGTTACAGGCAAGTGAGGCTTCCTCATGCTCTGTATGCTCACCTGTGATGCTCACGTTCATCCTCCC--AGGTGAGCTGGCAGCATCTAGGATCCCCATTTGACAGAC-A-----------GCTCTAAGGGCTTCCCATGAGGCGGCAGGAAGCCTCGGGTCTCA-AGTCAGGCCCACACGC-----TGCTCTCTGGACTCG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12260041 350 + 20526591 ttgtggtggggttctcctaggcactctgggacgttcagcagcatccctggccttgacctattagatgccagtagcaatctccc----tgc------------caagttgcaacaagcagaaatatctccagacattgcccagtatttcct--g---ggggtaaa-----tc---ccagctgagaatccctgCTTCCGAGTTACAGGCAAGTGAGGCTTCCTCATGCTCTGTATGCTCACCTGTGATGCTCACGTTCATCCTCCC--AGGTGAGCCGGCAGCGTCTAGGATCCCCATTTGACAGAC-A-----------GCTCTAAGGGCTTCCCATGAGGCGGCAGGAAGCCTCGGGTCTCA-AGTCAGGCCCACACGC-----TGCTCTCTGGACTCG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119231913 348 + 128539186 --gtggtggggctctcctagacgctctaggacatccagcagcatccctggccttgacctattagatgccagtagcaatctccc----tgt------------caggttgcaacaagcagaaatatctccagacattgcccagtatttcct--g---ggggcaaa-----tc---ccagctgagaatccctgCTTTCGAGTTACAGGCAAGTGAGGCTTCCTCATGCTCTGTATGCTCCACTGTGATGCTCACGGTCATCCTCCC--AGGCAAGCTGGCAGCGTCTAGGATCCCCATTTGACAGAC-A-----------GCTCTAACGGCTTCCCATGAGGCGGCAGGAAGCCTCGGGTCTCA-AGTCAGGCCCACGCGC-----TGCTCTTTGGACTCG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 562344 350 + 6255621 ttgtggtggggctctcctaggcactctgggacgttcagcagcatccctggccttgacctattagatgccagtagcaatctccc----tgc------------caagttgcaacaagcagaaatatctccagacattgcccagtatttcct--g---ggggcaaa-----tc---ccagctgagaatccctgCTTCTGAGTTACAGGCAAGTGAGGCTTCCTCATGCTCTGTATGCTCACCTGTGATGCTCACGTTCATCCTCCC--AGGTGAGCTGGCAGCGTCTAGGATCCCCATTTGACAGAC-A-----------GCTCTAAGGGCTTCCCATGAGGCGGCAGGAAGCCTCAGGTCTCA-AGTCAGGCCCACATGC-----TGCTCTCTGGACTCG i manLeu1.NW_012103587v1 I 2956 C 0 s colAng1.NW_012116043v1 4609349 348 - 8658521 --gtggtggggctctcctgggcactctgggacgttcagcagcatccctggccttgacctattggatgccggtagcaatctgcc----tgc------------caagttgcaacaagcagaaatatctccagacattgccccgtatttcct--g---ggggcaaa-----tc---ccggctgtaaatccctgCTTCCGAGTTACAGGCAAGTGAGGCTTCCTCATGCTCCGTATGCTCACCTGTGATGCTCACGGTCATCCTCCC--AGGCGAGCTGGCAGCGTCTAGGATCCCCGTTTGACAGAC-A-----------GCTCTAAGGGCTTCCCATGAGGCAGCAGGAAGCCTCGGGTCTCA-AGTCAGGCCCACACCC-----TGCTCTCTGGACTCG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114809116 279 + 124281992 ttgtggcggggccgtcctgggcactgtggggcgtgcggcagcatccctggctttcacctattagatgccagtagcaatctccc----tgc------------caagttgcagcaaccagcaacagctccagacattgcccataatttcctggg---ggggcaaa-----tcagccccactgtgaatccct------------------------gCTTCCTCCTGCTCTGTGTGCTCACCTGTGATGCTCACACTCATCCT-CC--TAGCAAGTTGGTGGCATCTAGGATCCCCATTTGACAGAC-A-----------------------------GGAGCTGGAG---------------------------------------GCTCTCCGGACTCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 453588 302 - 9212255 ttgtggtggggccgtcctgggcactgtggggcgtgcggcagcatccttggccttgacctattcgatgccagtagcagtctccc----tgc------------caagttgcagcaaccagcagcagctccagacattgcccagaatttcct-gg---ggggcaaa-----tcagccccgctgagaatccctgCTTCCGAATTACGGGTAAGTGAGGCTTCCTCGTGCTCTGTGTGCTCACCTGTAATGCTCACATGCATCCT-CC--GAGCAAGCTGGTGGCATCTAGGATCCCCATTTGACAGAC-A-----------------------------GGAGCTGGAG---------------------------------------GCTCTCTGGACTCG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2868331 301 + 4466143 ttgtggcggggccgtcctgggcactgtggggcgtgcggcagcatccctggccttgacctattagatgccagtagcaatctccc----tgc------------caagttgcaacaacgagcaacagctccagacattgcccagaatttcct-ag---ggggtaaa-----tcagccccgctgagaatccctgCTTCTGAGTTACGGGTAAGTGAGGCTTCTTCATGCTCAGTGTGCTCACCTGtgatgctcacactcatcct--c--gagcaagttggtggcatctaggatccccatttgacagat-a-----------------------------ggagctggag---------------------------------------gctcTCTGGACTCG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1574872 300 + 5364348 gtgtggcggggccgtcctgggcactgt-gggcgtgcggcagcatccctggccttgacctattagaggccagtagcaatctcct----tgc------------caagttgaagcaaccagcaacagctccagacattgcccagaatttcct-gg---ggggcaaa-----tcag-cccgctgagaatccctgCTTCTGAGTTACGGGTAAATGAGGCTTCCTCATGCTCTGTGTGCTCA-CTGTGATGCTCACACTCATCCT-CC--TGACAAGTTGGTGGCCTCTAGGATCCCCATTTGACAGGCAA-----------------------------GGAGCTGGAG---------------------------------------GCTCTCCGGACTCG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4301773 329 + 7922563 -------------------------------Ggttcagcagcatctctggactctactgcctagatgtcagtagcattcttcccccatcc------------caagttgtttcaatccaaaatgtctctagacattactaaaaatctctt--ggaaggggcaga-----tcaacacaggtgagaattcctgCTTCAGAGTTAGAGGTGAGTGAAActttcacatgttccgtatggtcacctttggtgctcacagtaacctt-cc--aggtaagcagatggcatttattatgcccactttatagat-gaggagcttaaggctcaaggggcttTACCAAGGGCA--AGTGAACCTTGGGTCTGA-GA----GCCAGGATGC-----AGCCCTC----CTCC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33155671 324 - 38964690 ---ctgcggggctgtcctgggtattacaggctggctggcagcacccctggcctctccgtgcctgattccattagcatccccac----cccccaacacacacacaaactggggcaaccgaaaatgtctccggacattgccaagtgtcactt-ag---ggggcacagttgtcc---ctggtcaagtacccctgCtt------------------------------------------------tgccgctcacgatcaccccccccaaggtacgcgggaggcacttattcctcccatttcactgat-g---agattgaggctcagagggattCACCCTCAGTGTATG--AGCCTGGGGCCTCAGAGTTAGGGCCCCTCACCTTGGCGTCCTCT------- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e mm10.chr5 124805917 2627 + 151834684 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 833652 2866 - 1116856 I a score=729877.000000 s hg38.chr12_KI270834v1_alt 66623 85 + 119498 GCACCTGCTGATCTTTC---CACACCT---TCCATCAC--TCAGTCAGCACTTAGA-GCGGTCATGACCCTGGGACTC----------AGAGAGATC------A----CCAGCA s panTro5.chr12 127352723 85 + 137163284 GCACCTGCTGATCTTTC---CACACCT---TCCATCAC--TCAGTCAGCACTTAGA-GCGGTCATGACCCTGGGACTC----------AGAGAGATC------A----CCAGCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125703946 85 + 135337776 GCACCTGCTGATCTTTC---CACACCT---TCCATCAC--TCAGTCAGCACTTAGA-GCGGTCATGACCCTGGGACTC----------AGAGAGATC------A----CCAGCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8216885 85 - 8369578 GCACCTGCTGATCTTTC---CACACCT---TCCATCAC--TCAGTCAGCACTTAGA-GCGGTCATGACCCTGGGACTC----------AGAGAGATC------A----CCAGCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97864709 85 + 106955855 GCACCTGCTGATCTTTC---CACACCT---TCCATCAC--TCAGTCAGCACCTGGA-GCGGTCGTGACCCTGGGACTC----------AGAGAGACC------A----CCAGCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123990048 84 + 133663169 GCACCTGTGGCTGTTTC---CACACCT---TCCATCAC-TTCAGTCAGCGCCTAGA-GAGGTCGTGACCCTAGGACTG------------AGAGATC------A----TCAGCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128237440 84 + 137757926 GCACCTGCGGCTGTTTC---CACACCT---TCCATCAC-TTCAGTCAGCGCCTAGA-GAGGTCGTGACCCTAGGACTG------------AGAGATC------A----TCAGCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10636780 84 - 16319837 GCACCTGCGGCTGTTTC---CACACCT---TCCATCAC-TTCAGTCAGCGCCTAGA-GAGGTCGTGACCCTAGGACTC------------AGAGATC------A----TCAGCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12260391 84 + 20526591 GCACCTGCGGCTGTTTC---CACACCT---TCCATCAC-TTCAGTCAGCGCCTAGA-GAGGTCGTGACCCTGGGACTC------------AGAGATC------A----TCAGCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119232261 86 + 128539186 GCACCTGCGGCTGTTTC---CACACCT---TCCGTCAC-TTCAGTCAGCGCCTAGA-GAGGTGGTGACCCTGGGACTC----------AGAGAGATC------A----TCAGCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 562694 84 + 6255621 GCACCTGCGGCTGTTTC---CACACCT---TCCGTCAC-TTCAGTCAGCGCCTAGA-GAGGTCGTGACCCTGGGACTC------------AGAGATC------A----TCAGCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4609697 86 - 8658521 GCACCTGCGGCTGTTTC---CACACTT---TCCGTCAC-TTCAGTCAGCGCCTAGA-GAGGTCGTGACCCTGGGACTC----------AGAGAGATC------A----TCAGCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114809395 83 + 124281992 TCACCTGCTGCTATTTC---CATGCCT---TCTGCCAC-TTCAATCTGCGC-AAGA-CAGGTCATGACCCTGGGACTC------------AGAGGTC------A----CTAGCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 453890 83 - 9212255 TCACCTGCTGCTATTTC---CATGCCT---TCCGCCAC-TTCAGTCAGCGC-GAGA-GAGGTCGTGACCCTGGGACTC------------AGAGGTC------A----CCAGCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2868632 83 + 4466143 TCACCTGCTGCTATTTC---CATGCCT---TCCGCCAC-TTTAGTCAGCAT-GAGA-GAGGTCATGACCCTGGGACTC------------AGAGGTC------A----CCAGCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1575172 83 + 5364348 TCACCTGCTGCTATCTC---CATGCCT---TCCGCCAC-TTCAGTCAGCGC-GAGA-GAGGTCATGACCCTGGGACTC------------AGAGGTC------A----CCAGCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4302102 89 + 7922563 TCA-------ATATT----------CT---TCCATGACCTTTGGTCAGTGCCTGGA-GAAGTAATGACCTCGAGACCAAAAAAAGAAAAAAGAAACCAAACAAA----CCCACA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124808544 94 + 151834684 GCACCTGCTATTCTTCCCATCATGCCTTGCTCCATCAC-CTCCTTTTACACTCAGG-GAGGTCAGAACTCAGAGACCT------------GAAAGCC------AGTTCCCCCCA i mm10.chr5 I 2627 C 0 s canFam3.chr26 33155995 77 - 38964690 GCTCCT-CTGGTAATGC---TGTG-CT---CCCGTCAT-TTCAGT----GCCTAGAGGAGACTATAACCCCGAGGCTG----------A-AAAACCC------A----TCA--- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e proCoq1.NW_012154285v1 6713727 148 - 9870158 I e dasNov3.JH568189 833652 2866 - 1116856 I a score=101930.000000 s hg38.chr12_KI270834v1_alt 66708 8 + 119498 TGTCTTCC s panTro5.chr12 127352808 8 + 137163284 TGTCTTCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125704031 8 + 135337776 TGTCTTCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8216970 8 - 8369578 TGTCTTCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97864794 8 + 106955855 TGTCTTCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123990132 8 + 133663169 TGTCTTCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128237524 8 + 137757926 TGTCTTCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10636864 8 - 16319837 TGTCTTCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12260475 8 + 20526591 TGTCTTCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119232347 8 + 128539186 TGTCTTCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 562778 8 + 6255621 TGTCTTCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4609783 8 - 8658521 TGTCTTCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114809478 8 + 124281992 TGTCTTCG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 453973 8 - 9212255 TGTCTTCG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2868715 8 + 4466143 TGTCTTCG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1575255 8 + 5364348 CGTCTTCG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6713875 8 - 9870158 TGTCTTCG i proCoq1.NW_012154285v1 I 148 C 0 s otoGar3.GL873618 4302191 8 + 7922563 TGTCCCTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124808638 5 + 151834684 ---CCTCC i mm10.chr5 C 0 I 3 s canFam3.chr26 33156072 8 - 38964690 TGTCTCTG i canFam3.chr26 C 0 C 0 e micMur3.chr21 9464581 2392 - 31815103 I e dasNov3.JH568189 833652 2866 - 1116856 I a score=3870716.000000 s hg38.chr12_KI270834v1_alt 66716 218 + 119498 TTTTCCAGGAATTGTACCTGCGCTTTTTTCTGAAGAGGAGAAAGAGTCTATCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCGGCCAAGGAGTCTGTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACATTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAGGTACCC s panTro5.chr12 127352816 218 + 137163284 TTTTCCAGGAATTGTACCTGCGCTTTTTTCTGAAGAGGAGAAGGAGTCTATCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCGGCCAAGGAGTCCGTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACATTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAGGTACCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125704039 218 + 135337776 TTTTCCAGGAATTGTACCTGCGCTTTTTTCTGAAGAGGAGAAGGAGTCTATCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCGGCCAAGGAGTCCGTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACATTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAGGTACCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8216978 217 - 8369578 TTTTCCAGGAATTGTACCTGCGCTTTTTTCTGAAGAGGAGAAGGAGTCTATCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCGGCCAAGGAGTC-GTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACATTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAGGTACCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97864802 218 + 106955855 TTTTCCAGGAATTGTACCTGCGCTTTTCGCTGAAGAGGAGAAGGAGTCTGTCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCGGCCAAGGAGTCCGTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACGTTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAGGTACCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123990140 218 + 133663169 TTTTCCAGGAATTGTACCTGCGCTTTTCCCTGAAGAGGAGAAGGAGTCTATCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCAGCCAAGGAGTCCGTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACATTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAGGTACCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128237532 218 + 137757926 TTTTCCAGGAATTGTACCTGCGCTTTTCCCTGAAGAGGAGAAGGAGTCTATCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCGGCCAAGGAGTCCGTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACATTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAGGTACCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10636872 218 - 16319837 TTTTCCAGGAATTGTACCTGCGCTTTTCCCTGAAGAGGAGAAGGAGTCTATCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCGGCCAAGGAGTCCGTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACATTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAGGTACCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12260483 218 + 20526591 TTTTCCAGGAATTGTACCTGCGCTTTTCCCTGAAGAGGAGAAGGAGTCTATCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCGGCCAAGGAGTCCGTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACATTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAGGTACCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119232355 218 + 128539186 TTTTCCAGGAATTGTACCTGCGCTTTTCCCTGAAGAGGAGAAGGAGTCTATCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCGGCCAAGGAGTCCGTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACATTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAGGTACCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 562786 218 + 6255621 TTTTCCAGGAATTGTACCTGCGCTTTTCCCTGAAGAGGAGAAGGAGTCTATCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCGGCCAAGGAGTCCGTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACATTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAGGTACCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4609791 218 - 8658521 TTTTCCAGGAATTGTACCTGCGCTTTTCCCTGAAGAGGAGAAGGAGTCTATCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCGGCCAAGGAGTCCGTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACATTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAGGTACCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114809486 218 + 124281992 TTTTCTAGGAATCGTACCTGCGCTTTTCCCTGAAGAGGAGAAGGAGTCTATCCTCAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGCCCAGCCAAGGAGTCCGTGTGGCAGTACTTCGTGAACAAAAGTGCAAACAACCTGCACATCGTCCTCGGCATGTCGCCAGTCGGGGACACCCTGAGGACCCGGTGCAGAAACTTCCCAGGTACCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 453981 218 - 9212255 TTTTCTAGGAATCGTACCTGCGCTTTTCCCTGAAGAGGAGAAGGAGTCTATCCTCAGTCAGATTGGACAGGAAGCCCTGAAGCAAGGCATGGGCCCGGCCAAGGAGTCCGTGTGGCAGTACTTCGTGAACAAAAGTGCAAACAACCTGCACATCGTCCTCGGCATGTCGCCGGTCGGGGACACCCTGAGGACACGGTGCAGAAACTTCCCAGGTATCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2868723 218 + 4466143 TTTTCTAGGAATCGTACCTGCGCTTTTCCCTGAAGAGGAGAAGGAGTCTATCCTCAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGCCCGGCCAAGGAGTCTGTGTGGCAGTACTTCGTGAACAAAAGTGCAAACAACCTGCACATCGTCCTTGGCATGTCGCCGGTCGGGGACACCCTGAGGACCCGGTGCAGAAACTTTCCAGGTACCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1575263 218 + 5364348 TTTTCCAGGAATCGTACCTGCGCTTTTCCCTGAAGAGGAGAAGGAGTCTATCCTCAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGCCCGGCCAGGGAGTCCGTGTGGCAGTACTTCGTGAACAAAAGTGCAAACAACCTGCACATCGTCCTTGGCATGTCGCCGGTCGGGGACACCCTGAGGACCCGGTGCAGAAACTTCCCAGGTACCC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9466973 218 - 31815103 TTTTCTAGGAATCGTGCCTGCGCTTTTCCCCGAGGAGGAGAAGGAGTCCATCCTCAGCCAGGTCGCACAGGAGGCCGTGAAGGCGGGCATGGGGCCGGCCAAGGAGTCCGTGTGGCAGTTCTTCGTGAACAAAAGCGCAAACAACCTGCACATCGTCCTGGGCATGTCGCCCGTGGGGGACACCCTGAGGACCCGGTGCAGGAACTTCCCAGGTACCC i micMur3.chr21 I 2392 I 594 s proCoq1.NW_012154285v1 6713883 218 - 9870158 TTTTCCAGGAATCGTACCTGCGCTGTTTGCCGAAGAGGAGAAGGAGTCCGTCCTCAATCAGGTTGGACAAGAGGCTGCGAAGGCGGGCATGGGGCCGGCCAAGGAGTCCGTGTGGCAGTTCTTTGTGAACAAAAGTGCAAACAACCTGCACATCGTCCTGGGCATGTCGCCTGTGGGGGACACCCTGAGGACCCGGTGCAGAAATTTCCCAGGTACCC i proCoq1.NW_012154285v1 C 0 I 596 s otoGar3.GL873618 4302199 218 + 7922563 TTTTTTAGGAATTGTACCTGCACTTTTCGCAGAAGAGGACAAGGAGTCTATCCTCAGTCAGATTGGACAAGAGGCTGCCAAACAGGGCATGGGGCCGGCCAAGGAGTCCGTGTGGCAGTACTTTGTGAACAAAAGTGCAAACAACCTGCACATCGTCTTAGGCATGTCACCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAATTTCCCAGGTACCC i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124808646 218 + 151834684 TCCTCCAGGAATGGTCCCCGCGCTCTTCGCTGAAGAGGAAAAGGACAACATCCTTGGTCAGATCGGGCAGGAGGCCTTGAAGTTCGGGATGGGTCCAGCCAAGGAGTCTGTGTGGCAGTTTTTTGTGAATAAGAGTGCTAACAACCTACACATCGTCCTGGGCATGTCACCAGTGGGAGACACCTTGAGGACCCGGTGTAGGAATTTCCCAGGTACCT i mm10.chr5 I 3 I 2 s canFam3.chr26 33156080 218 - 38964690 TTTTCTAGGAATCGTACCTGCACTTTTCCCAGAAGAGGAGAAAGAGACGATCCTCAGTCAGATCGGACAAGAAGCCCTGAAGCAAGGGACGGGCCCGGCCAAAGAGTCTGTGTGGCAGTACTTTGTGAACAAGAGTGCAAATAATCTGCACATCGTCCTGGGCATGTCGCCGGTGGGGGACACCCTGAGGACCCGGTGCAGGAATTTCCCAGGTGCCC i canFam3.chr26 C 0 C 0 e dasNov3.JH568189 833652 2866 - 1116856 I a score=1913587.000000 s hg38.chr12_KI270834v1_alt 66934 196 + 119498 -GCGGTGGAGCCTGTGAACCCATTTCCCCTGCTTTGGCAGAGTGTGTG-GCTGAGGG-TCTGTCCACACCTCTCCAGGTTCCCCC--AGCAAAGCAAAACAAGACACGGCCAT--TAGGTGGAAATGTGGGCTCTGCACTGTAGCTTGGGGCTCAC--TGCCCCTTCTAGGTGCCAG---TGGGC----------------GTGAGTGATGTCCCTCTGACAGG s panTro5.chr12 127353034 196 + 137163284 -GCGGTGGAGCCTGTGAACCCATTTCCCCTGCTTTGGCAGAGTGTGTG-GCTGAGGG-TCTGTCCACACCTCTCCAGGTTCCCCC--AGCAAAGCAAAACAAGACACGGCCAT--TAGGTGGAAATGTGGGCTCTGCACTGTAGCTTGGGGCTCAC--TGCCCCTTCTAGGTGCCAG---TGGGC----------------GTGAGTGATGTCCCTCTGACAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125704257 196 + 135337776 -GCGGTGGAGCCTGTGAACCCATTTCCCCTGTTTTGGCAGAGTGTGTG-GCTGAGGG-TCTGTCCACACCTCTCCAGGTTCCCCC--AGCAAAGCAAAACAAGACACGGCCAT--TAGGTGGAAATGTGGGCTCTGCACTGTAGCTTGGGGCTCAC--TGCCCCTTCTAGGTGCCAG---TGGGC----------------GTGAGTGATGTCCCTCTGACAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8217195 195 - 8369578 --CGGTGGAGCCTGTGAACCCATTTCCCCTGCTTTGGCAGAGTGTGTG-GCTGAGGG-TCTGTCCACACCTCTCCAGGTTCCCCC--AGCAAAGCAAAACAAGACACGGCCAT--TAGGTGGAAATGTGGGCTCTGCACTGTAGCTTGGGGCTCAC--TGCCCCTTCTAGGTGCCAG---TGGGC----------------ATGAGTGATGTCCCTCTGACAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97865020 196 + 106955855 -GCGGTGGAGCCTGTGAACCCATTTCCCCTGCTTTGGCAGAGTGTGTG-GCTGAGGG-TCTGTTCACACCTCTCCAGGTTCCCCC--AGCAAAGCAAAACGAGACACGGCCAT--TAGGTGGAAATGTAGGCTCTGCACTATAGCTTGGGGCTCAC--TGCCCCTTCTAGGTGCCAG---TGGGC----------------GTGAGTGATGTCTCTCTGACGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123990358 194 + 133663169 -GTGGTGGAGCCTGAGAACCCATTTCCCCTGCTTTGGCAGGGTGTGTG-GCTGAGGG-TCTGTCCACACCTCTAGAGGTTCCCCC--AGCAAAGCAAAACAAGGCATGGCCAT--TAGGTGGAAATGTGGGCTCTGCACTGTAGCTTGGGGCTCAC--TGCCCCATCCA--CGCCAG---TGGGC----------------ATGGATGATGTCCCTCTGACAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128237750 194 + 137757926 -GTGGTGGAGCCTGAGAACCCATTTCCCCTGCTTTGGCAGGGTGTGTG-GCTGAGGG-TCTGTCCACACCTCTAGAGGTTCCCCC--AGCAAAGCAAAACAAGGCATGGCCAT--TAGGTGGAAATGTGGGCTCTGCACTGTAGCTTGGGGCTCAC--TGCCCCATCCA--TGCCAG---TGGGC----------------GTGGATGATGTCCCTCTGACAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10637090 194 - 16319837 -GTGGTGGAGCCTGAGAACCCATTTCCCCTGCTTTGGCAGGGTGTGTG-GCTGAGGG-TCTGTCCACACCTCTAGAGGTTCCCCC--AGCAAAGCAAAACAAGGCATGGCCAT--TAGGTGGAAATGTGGGCTCTGCACTGTAGCTTGGGGCTCAC--TGCCCCATCCA--CGCCAG---TGGGC----------------GTGGATGATGTCCCTCTGACAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12260701 194 + 20526591 -GTGGTGGAGCCTGAGAACCCATTTCCCCTGCTTTGGCAGGGTGTGTG-GCTGAGGG-TCTGTCCACACCTCTAGAGGTTCCCCC--AGCAAAGCAAAACAAGGCATGGCCAT--TAGGTGGAAATGTGGGCTCTGCACTGTAGCTTGGGGCTCAC--TGCCCCATCCA--CGCCAG---TGGGC----------------GTGGATGATGTCCCTCTGACAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119232573 194 + 128539186 -GTGGTGGAGCCTGTGAACCCATTTCCCCTACTTTGGCAGGGTGTGTG-GCTGAGGG-TCTGTCCACACCTCTAGAGGTTCCCCC--AGCAAAGCCAAACAAGGCATGGCCAT--TAGGTGGAAATGTGGGCTCTGCACTGTAGCTTGGGGCTCAC--TGCCCCATCCA--CGCCAT---TGGGC----------------GTAGATGATGTCCCTCTGACAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 563004 194 + 6255621 -GTGGTGGAGCCTGAGAACCCATTTCCCCTGCTTTGGCAGGGTGTGTG-GCTGAGGG-TCTGTCCACACCTCTAGAGGTTCCCCC--AGCAAAGCAAAACAAGGCATGGCCAT--TAGGTGGAAATGTGGGCTCTGCACTGTAGCTTGGGGCTCAC--TGCCCCATCCA--CGCCAG---TGGGC----------------GTGGATGATGTCCCTCTGACAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4610009 194 - 8658521 -GTGGTGGAGCCTGGGAACCCATTTCCCCTGCTTTGGCAGGGTGTGTG-ACTGAGGG-TCTGTCCACACCTCTAGAGGTTCCCCC--AGCAAAGCAAAACAAGACATGGCCAT--TAGGTGGAAATGTGGGCTCTGCACTGTAGCTTGGGGCTCAC--TGCCCCATCCA--CGCCAG---TGGGC----------------GTGGATGATGTCCCCCTGACAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114809704 193 + 124281992 -TCAGTGGAGCCTGCAAACCCGTTTCCCCTGCATTGGCAAGGTGTGTG-GGTGGGGG-TCTGTCTGCACCTCTTGAGGTACCCCC--AGCAAAGCAACACGAGACATGGCCAT--TAGGTGGAAATGTGGGCTCTGCACTGTAGTGTGAGCCTCGC--TGCCCGTGACGGGTGCTGG---CAGGC----------------GTAGGTGATGGC---CTAAGGCG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 454199 198 - 9212255 -GCAGTGGAGCCCGCGAACCCGTCTCCCCTGCATTGGCAGGATGTGTG-GCTGGGGG-TCTGTCCGCACCTCTCAAGGTACCCCCTGAGCAAAGCAAAACGAGACATGGCCAT--TACGTGGAAATGTGGGCTCAGCACTATAGTGTGAGCCTCGC--TGCCCCTGTCAGGTGCCAG---CAGGC----------------GTAGGTGATGTCCTTCTAAGGCG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2868941 196 + 4466143 -ACGGTGGAGCCTGCGAACCTGTTTCCCCTGCATTGGCAGGGTGTATG-GCTGGGGG-TCTGTCCGCACCTCTCAAGGTACCCCC--AGCAAAGCAAAACGAGACATGGCCAT--TAGGTGGAAATGTGGGCTCTGCACTGTAGTGTGAGCCTTGC--TGCCCCTGACAGGTGCCGG---CAGGC----------------ATAGGTGATGTCCTTCTAAGGCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1575481 197 + 5364348 -GCGGTGGAGCCTGCGAACCCGTTTCCCCTGCATTGGCAGGGTGTCTG-GCTGGGGGTTCTATCCGCACCTCTCGAGGTACCCCC--AGCAAAGCAAAACGAGACATGGCCAT--TAGGTGGAAATGTGGACTCTGCACTGTAGTGTGAGCCTCGC--TGCCCCTGACAGGTGCCGG---CAGGC----------------ATAGGTGATGTCCTTCTGAGGCG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4302418 177 + 7922563 -GGAACTGAGCCTGCAGACCTGCTTCTCCTGC-TTAGCAGGGCATGGGTGCTGGGGG-TTTGTCT--ACCTCTTGAGATTCCACC--AGTGAAGTAGAACAAG-------CAT--TGGGTTGACGTGTAGGCCCTAC---GTGGTGAGGGGAGCTT--TGTGATTGCCA----CCAGGCTTAGGC----------------GTAGGTGACATTCTCCT------ i otoGar3.GL873618 I 1 C 0 s mm10.chr5 124808866 167 + 151834684 -TGAGCCGAGCCTGTAAATCCTTCACCATCGC-----------------TCTGGGGA----GCCGACACATCCAAGCTCCCCTCC--AGCAGCGTCACACAGGAT---GTCATGCTAACTTGAAA-GTTGGCCTTGCACACCTCCTTGG----------CCCCTTCTTAGGTCTCCG---TAGAC----------------ATGGCTGGCGTCTTCCCGGCAGG i mm10.chr5 I 2 I 158 s canFam3.chr26 33156298 167 - 38964690 CTGAGCTGAGCCTGCACATCCTCTCCCCC-----------------------------CC--------------------CCTTC--CGCAGGGCAAAACAGGAGACGGTCAC--TGGGCAGAAGCGTGGGCTCTGCTGTGTAGTGTGGGTCCCACTGTGTCCCCCACAGCTGCCAG---CAGGCTCTCGAGCTGCCCACAGTGGGTGCTGTCCC-CTGATGCG i canFam3.chr26 C 0 C 0 e micMur3.chr21 9467191 594 - 31815103 I e proCoq1.NW_012154285v1 6714101 596 - 9870158 I e dasNov3.JH568189 833652 2866 - 1116856 I a score=3006275.000000 s hg38.chr12_KI270834v1_alt 67130 302 + 119498 AGGATGTACCCATGCTCCTCCATGCGAGGCCC----GCAGTGCATGGACGGTGGCTCCCCGCTTCCTTCCATTTGGGAAAATTCCACCAGCCTCATGCCAG--------------CCTTTAGAGCAGAGGTTCCTAATGGGC------------GGGGCAGGGGcgggggaggttgtgtt--cta---ggggactcttggcaatgcctggagacatttttggtcatcacagccccggggagc-atgcagtgtagtactggcatctagtgggtagaagccagggatgctgtgaagcatcctacagtgcacagccagc---------tgctgccacaaaggatta---gagc s panTro5.chr12 127353230 302 + 137163284 AGGATGTACCCATGCTCCTCCATGTGAGGCCC----GCAGTGCATGGACGGTGGCTCCCCGCTTCCTTCCATTTGGGAAAATTCCACCAGCCTCATGCCAG--------------CCTTTAGAGCACAGGTTCCTAATGGGC------------GGGGCAGGGGcgggggaggttgtctt--cta---ggggactcttggcaatgcctggagacatttttggtcgtcacacccccggggagc-gtgcagtgtagtactggcatctagtgggtagaagccagggatgctgtgaagcatcctacagtgcacagccagc---------tgctgccacaaaggatta---gagc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125704453 302 + 135337776 AGGATGTACCCATGCTCCTCCATGTGAGGCCC----GCAGTGCATGGACGGTGGCTCCCCGCTTCCTTCCATTTGGGAAAATTCCACCAGCCTCATGCCAG--------------CCTTTAGAGCAGAGGTTCCTAATGGGC------------GGGGCAGGGGcgggggcggttgtctt--cta---ggggactcttggcaatgcctggagacatttttggtcatcacacccccggggagc-gtgcagtgtagtactggcatctagtgggtagaagccagggatgctgtgaagcatcctacagtgcacagccagc---------tgctgccacaaaggatta---gagc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8217390 300 - 8369578 AGGATGTACCCATGCTCCTCCATGCGAGGCCC----GCAGTGCATGGACGGTGGCTCCCCGCTTCCTTCCATTTGGGAAAATTCCACCAGCCTCATGCCAG--------------CCTTTAGAGCAGAGGTTCCTAATGGGC-------------GGGCAGGGGcgggggaggttgtctt--cta---ggggactcttggcaatgcctggagacatttttggtcatcaaacccccggggagc-gtgcagtgtagtactggcatctagtgggtagaag-cagggatgctgtgaagcatcctacagtgcacagccagc---------tgctgccacaaaggatta---gagc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97865216 301 + 106955855 AGGATGTGCCCATGCTCCTCCATGCGAGGCCC----GCAGTGCGTGGATGGTGGCT-CCCGCTTCCTTCCGTTTGGGAAAATTCCACCAGCCTCATGCCAG--------------CCTTTAGAGCAGAGGTTCCTAATGGGT------------GGGGCAGGGGTAGGGGAGGttgtctc--cta---ggggactcttggcaatgcctggagacatttttggtcatcacacccccggggagc-gtgcagtgtagtactggcatctagtgggtagaagccagggatgctgcgaagcatcctacagtgcacagccagc---------tgctgccacaaaggatta---gagc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123990552 302 + 133663169 AGGATGTGCCCACGCTCCTGCGTGCGAGGCCC----GCAGTGTGTGGAGGGTGGCTCCCCGCTTCCTTCCATTTCGGAAAATTCCACCAGCCACATGCCAA--------------CCTTTAGAGCAGAGGTTCCTAATGGGT------------GGGGCAGGGGcgggggaggttgtctc--cca---ggagactcttggcaatgcctggagacatttttggtcgtcacacctccagggagc-gtgcaatgtagtactcgcatctactgggtagaagccagggatgctgcgaagcatcctacagtgcacagccagc---------ccctgccacaaaggatta---gagc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128237944 302 + 137757926 AGGATGTGCCCACGCTCCTGCGTGCGAGGCCC----GCAGCGTGTGGAGGGTGGCTCCCCGCTTCCTTCCATTTCGGAAAATTCCACCAGCCACATGCCAA--------------CCTTTAGAGCAGAGGTTCCTAATGGGG------------GGGGCAGGGGcgggggaggttgtctc--cca---ggagactcttggcaatgcctggagacatttttggtcatcacacctccagggagc-gtgcaatgtagtactcgcatctactgggtagaagccagggatgctgcgaagcatcctacagtgcacagccagc---------ccctgccacaaaggatta---gagc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10637284 302 - 16319837 AGGATGTGCCCACGCTCCTGCGTGCGAGGCCC----GCAGTGTGTGGAGGGTGGCTCCCCGCTTCCTTCCATTTCGGAAAATTCCACCAGCCACATGCCAA--------------CCTTTAGAGCAGAGGTTCCTAATGGGT------------GGGGCAGGGGcgggggaggttgtctc--cca---ggagactcttggcaatgcctggagacatttttggtcatcacacctccagggagc-gtgcaatgtagtactcgcatctactgggtagaagccagggatgctgcgaagcatcctacagtgcacagccagc---------ccctgccacaaaggatta---gagc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12260895 302 + 20526591 AGGATGTGCCCACGCTCCTGCGTGCGAGGCCC----GCAGTGTGTGGAGGGTGGCTCCCCGCTTCCTTCCATTTCGGAAAATTCCACCAGCCACATGCCAA--------------CCTTTAGAGCAGAGGTTCCTAATGGGT------------GGGGCAGGGGcgggggaggttgtctc--cca---ggagactcttggcaatgcctggagacatttttggtcatcacacctccagggagc-gtgcagtgtagtactggcatctactgggtagaagccagggatgctgcgaagcatcctacagtgcacagccagc---------ccctgccacaaaagatta---gagc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119232767 300 + 128539186 AGGATGTGCCCACACTCCTGCATGCGAGGCCC----GCAGTGTGTGGAGGGTGGCTCCCCGCTTCCTTCCATTTGGGAAAATTCCCCCAGCCACATGCCAA--------------CCTTTAGAGCAGAGGTTTCTAATGGGT------------GGGGcaggggc-agggaggttgtctc--cca---ggagactcttggcaatgcctggagaca-ttttggtcgtcacacctccagggagc-gtgcagtgtagtactggcatctactgggtagaagccagggatgctgcgaagcatcctacagtgcacagccagc---------ccctgccacaaaggatta---gagc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 563198 302 + 6255621 AGGATGTGCCCACGCTCCTGCATGCGAGGCCC----GCAGTGTGTGGAGGGTGGCTCCCCGCTTCCTTCCATTTGGGAAAATTCCACCAGCCACATGCCAA--------------CCTTTAGAGCAGAGGTTTCTAATGGGT------------GGGGAAGGGGcgggggaggttgtctc--cca---ggagactcttggcaatgcctggagacatttttggtcgtcacacctccagggagc-gtgcagtgtagtactggcatctactgggtagaagccagggatgctgcgaagcatcctacagtgcacagccagt---------ccctgccacaaagaatta---gagc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4610203 306 - 8658521 AGGATGTGCCCACGCTCCTGCATGCGAGGCCCACATGCAGTGTGTGGAGGGTGGCTCCCTGCTTCCTTCCATTTGGGAAAATTCCACCAGCCACATGCCAA--------------CCTTTAGAGCAGAGGTTTCTAATGGGT------------GGGGCAGGGGCGAGGGAGGttgtctc--cca---ggagactcttggcaatgcctggagacatttttggtcgtcacacctccagggagc-gtgcagtgtagtactggcatctactgggtagaagccagggatgctgcaaagcatcctacagtgcacaaccagc---------ccctgccacaaaggatta---gagc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114809897 298 + 124281992 AGGGTGCACCCACGCTCCTGCACACGAGACCT----GCAGTGCATGGAGGGTGGCTTCCTG----CTTCCATTTTGGAAAACTCCACCAGCCTCGTGCCTG--------------CCTTTAGAGCAGAGGTTCCTAATGGGT------------GGGGTAGGGGCAGGGGAGGttggcct--cca---ggggacacttggcaatggctggagacatttttggtcatcacgcctcaggggagc-atgtggtgtagtactggcatctggtgagtagaagccagggatgccacgaagcaccctacggtgcacagccagc---------ccctgccacaaagggtta---gatt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 454397 271 - 9212255 AGGGTGCACCCACGCTCCTGCACAC---------------------GAGGGTGGCTTCCTG----CTTCCATTTTGGAAAACTCCACGAGCCTCATGCCTG--------------CCTTTAGAGCAGAGGTTCCTAACGGGT------------GGGGCAGGGGCAGGGGAGGttggccc--cca---ggggacacttggcaatgcctggagacattttaggtcatcacacctcaggggagc-atgtggtgt-gtcctggcatctggtgagtagaa---------gccacgaagcaccctatggtgcacagccagc---------ccctgccacgaagggtta---gatc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2869137 289 + 4466143 AGGGTGCACCCACGCTCCTGCACACGAGGCCT----GCAGTGCATGGAGGGTGGCTTCCTG----CTTCCACTTCGGAAAACTCCACCAGCCTCGTGCCTG--------------CCTTTAGAGCAGAGGTTCCTAACAGGT------------GGGGCAAGGGCAGGGGAGGttggtcc--cca---ggggacacttggcaatgcctggagacatttttggtcatcacgcctcaggggagc-atgtggtgtagtcctggcatctggtgagtagaa---------gccacgaagcaccctacagtgcgcagccagc---------ccctgccacaaagggtta---gatc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1575678 310 + 5364348 AGGGTGCACCCACGCTCCAGCACACGAGGCCT----GCAGTGCACGGAGGGTGGCTTACCG----CTTCCATTTCGGAAAACTCCACCGGCCTCGTGCCTG--------------CCTTTAGAGcagaggttcctaacgggtggggcaggggcaggggcaggggcaggggaggttggccc--cca---ggggacacttggcaatgcctggagacatttttggtcatcacacctcaggggagc-atatggtgtggtactggcatctggtgagtagaagccagggatgccacgaagcaccctacggtgcacagccagc---------ccctgccacaaagggtta---gatc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4302595 266 + 7922563 -------ATTCCTGCTCCTAAGTGCAAGGTCC----ATAGTGCATAGAGCGTGGCTCTGTGCTCCCTTCTGTTTGGGAAAATTCTGC-------------------------------------cagaggttcttgatagga------------g-----------ggggattttgtttcctcca---ggggtcctttggcaatggctagagacatttgtggtcatcccaatgtggggtagaggttgactatactcctgacatctggtgggtagaggctggggatgctgccaaacaccctata-tgcacagccagc---------ccctgcaacagaggattgcccaacc i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33156465 306 - 38964690 -AGGAACGCTCATGGGCCCCAGTGCCCAGCCC----CTAGTG----------AGCTCTCCGCTCTCTTCCATCT-GGAACATTTTGCCAGCCTCGTGGAAGGTGCAGTACCTAGACCTCTAGAGTGGAGGTTCTGAATTTAT------------ggagt-------gattttactggccc--ccactcaaggacatttgtcaatgcctggagacagttttggttgtcatg-ctgggtggggc-agggagtgtcctacag---tccagctgatggaggcccagg-tgctgccaaatattccatgctgcacagatagcgccccttcgccccccgccagaggatca-tccagc i canFam3.chr26 C 0 C 0 e micMur3.chr21 9467191 594 - 31815103 I e mm10.chr5 124809033 158 + 151834684 I e proCoq1.NW_012154285v1 6714101 596 - 9870158 I e dasNov3.JH568189 833652 2866 - 1116856 I a score=1600707.000000 s hg38.chr12_KI270834v1_alt 67432 134 + 119498 ccagatgtcaatagcgccaagggtgagaaactctgCTTTTGATGAACTAGATTTGGACACATCTGGCTCATTCACCAACTTGTTGGCTATTGAAGATGGCATCCATGTTCTTGAG--TGTCTCAGGGTTGCAGAAT s panTro5.chr12 127353532 134 + 137163284 ccagatgtcaatagcgccaagggtgagaaactctgCTTTTGATGAACTAGATTTGGACACATCTGGCTCATTCACCAACTTGTTGGCTATTGAAGATGGCATCCATGTTCTTGAG--TGTCTCAGGGTTGCAGAAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125704755 134 + 135337776 ccagatgtcaatagcgccaagggtgagaaactctgCTTTTGATGAACTAGATTTGGACACATCTGGCTCATTCACCAACTTGTTGGCTATTGAAGATGGCATCCATGTTCTTGAG--TGTCTCAGGGTTGCAGAAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8217690 134 - 8369578 ccagatgtcaatagcgccaagggtgagaaactctgCTTTTGATGAACTAGATTTGGACACATCTGGCTCATTCACCAACTTGTTGGCTATTGAAGACGGCATCCATGTTCTTGAG--TGTCTCAGGGTTGCAGAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97865517 132 + 106955855 ccagatgtcaatagcgccaagggtgagaaactctgCTTTTGATGAACTAGATTTGGACACATCTGGCTCATTCACCAACTTGTTGGCTATTGAAGATGGCATCCATGTTCTTGAG--TGTCTCA--GTTGCAGAGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123990854 134 + 133663169 tcacgtgtcaatagtgccaacagtgagaaactctgCTTTTGATGAACTAGATTTGGACACATCTGGCTTATTCACCAACTTGTTGGCTATTGTAGATGGCATCCATGTTCTTGAG--TGTCTCCGGGTTGCAGAGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128238246 134 + 137757926 tcacgtgtcaatagtgccaacggtgagaaactctgCTTTTGATGAACTAGATTTGGACACATCTGGCTTATTCACCAACTTGTTGGCTATTGTAGATGGCATCCATGTTCTTGAG--TGTCTCCGGGTTGCAGAGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10637586 134 - 16319837 tcacgtgtcaatagtgccaatggtgagaaactctgCTTTTGATGAACTAGATTTGGACACATCTGGCTTATTCACCAACTTGTTGGCTATTGTAGATGGCATCCATGTTCTTGAG--TGTCTCCGGGTTGCAGAGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12261197 134 + 20526591 tcacatgtcaatagtgccaacggtgagaaactctgCTTTTGATGAACTAGATTTGGACACATCTGGCTTATTCACCAACTTGTTGGCTATTGTAGATGGCATCCATGTTCTTGAG--TGTCTCCAGGTTGCAGAGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119233067 134 + 128539186 tcacatatcaatagcgccaagggtgagaaactctgCTTTTGATGAAATAGATTTGGATACATCTGGCTCATTCACTAACTTGTTGGCTATTGTAGATGGCATCCATGTTCTTGAG--TGTCTCAGGGTTGCAGAGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 563500 134 + 6255621 tcacatgtcaatagcgccaatggtgagaaactctgCTTTTGATGAACTAGATTTGGACACATCTGGCTTATTCACCAACTTGTTGGCTATTGTAGATGGCATCCATGTTCTTGAG--TGTCTCCGGGTTGCAGAGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4610509 134 - 8658521 tcacatgtcaatagcgccaagggtgaggaactctgCTTTTGATGAACTAGATTTGGATACATCTGGCTCATTCAGCAACTTGTTGGCTATTGTAGATGGCATCCATGTTCTTGAG--TGTCTCAGGGTTGCAGAGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114810195 134 + 124281992 ccacgtgtcagtagcgccaagggtgagaaactctgCTTTTGATGAACTGGATTTGGACACATTTCACTCATTCACCAACTTGTTGGCTATTGAAGACAGCATCCATGTTCTTGAG--TGTCTCAAGGTTGCAGAGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 454668 134 - 9212255 ccacgtgtcagtagcgccaagggtgagaaactctgCTTTTGATGAACTGGATTTGGATACGTCTCGCTCATTCACTATCTTGTTGGCTATTGAAGACAGCATCCACGTTCTTGAG--TGTCTCAGGGTTGCAGAGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2869426 132 + 4466143 ccacgtgtcagtagcgccaagggtgagaaa--ATGCTTTTCATGAACTGGATTTGGACACGTCTCGCTCATTCACCAACTTGTTGGCTATTGAAGACAGCATCCATGTTCTTGAG--TATCTCAGGGTTGCAGAGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1575988 134 + 5364348 ccacgtgtcagtagtgccaagggcgagaatctctgCTTTTGATGAACTGGATTTGGACACGTCTCGCTCATTCACCAACTTGTTGGCTATTGAAGACAGCATCCATGTTCTTGAG--TGTCTCAGGGTTGCAGAGT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4302861 128 + 7922563 ccaaatgtcaatggtggcaatgttgaaaaac--------TGCAGAATTAGACTTGGATATGTCCATCTCATTCACCAATCCAGGGGCTGCAGAAGATGGAATTGGTGTTCTTGGGCCCATCTCAGGGCTACAGAGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33156771 133 - 38964690 cca-atgccagtcacactgaggttgagaaactctgCTTTGAGTGAATTATTCCTGGACACGTCCAGCTCTTTCACCAATGCGCTGGGTGCTGAAGACCATGTCGATGTCCTCAAG--CATCTCAGGGTTGCCAACT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 836518 131 - 1116856 ccaaatgtcagcagcgctcaggttgagaaaccctgGACTTGATGAGTTGGACTATGGCCTGTCCAGTTCATTCACCAATTTGTTGAGTACTGAAGA--GTGTCATTGTTCTTGAG--CAGC-CAGGGTTGCAGAGT i dasNov3.JH568189 I 2866 C 0 e micMur3.chr21 9467191 594 - 31815103 I e mm10.chr5 124809033 158 + 151834684 I e proCoq1.NW_012154285v1 6714101 596 - 9870158 I a score=52372.000000 s hg38.chr12_KI270834v1_alt 67566 16 + 119498 GAGCATCCtttttttt s panTro5.chr12 127353666 8 + 137163284 GAGCATCC-------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125704889 8 + 135337776 GAGCATCC-------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8217824 9 - 8369578 GAGCATCC-------t i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97865649 8 + 106955855 GAGCATCC-------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123990988 16 + 133663169 GAACATCCttttttct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128238380 16 + 137757926 GAACATCCttttttct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10637720 16 - 16319837 GAACATCCttttttct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12261331 16 + 20526591 GAACATCCttttttct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119233201 16 + 128539186 GAACATCCttttttca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 563634 16 + 6255621 GAACATCCTTTTTTCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4610643 16 - 8658521 GAACATCCttttttct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114810329 7 + 124281992 GAACATC--------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 454802 8 - 9212255 TAACATCt-------- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2869558 7 + 4466143 GAACATC--------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1576122 7 + 5364348 GAACATC--------- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4302989 16 + 7922563 GAGCATCTTTTTTATC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33156904 16 - 38964690 GGTCATCTCTTTTGTT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9467191 594 - 31815103 I e mm10.chr5 124809033 158 + 151834684 I e proCoq1.NW_012154285v1 6714101 596 - 9870158 I e dasNov3.JH568189 836649 0 - 1116856 C a score=23766.000000 s hg38.chr12_KI270834v1_alt 67582 9 + 119498 ttttttt-tt s panTro5.chr12 127353674 7 + 137163284 --ttttt-tt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125704897 3 + 135337776 ------t-tt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8217833 9 - 8369578 ttttttt-tt i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123991004 9 + 133663169 ttctttc-tt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128238396 9 + 137757926 ttctttc-tt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10637736 6 - 16319837 ttct----tt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12261347 10 + 20526591 ttctttcttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119233217 9 + 128539186 gtttttt-tt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 563650 9 + 6255621 TTTTTTT-TT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4610659 9 - 8658521 ggttttt-tt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114810336 2 + 124281992 --------tt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 454810 8 - 9212255 -tttttt-tt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2869565 6 + 4466143 ---tttt-tt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1576129 5 + 5364348 ----ttt-tt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4303005 9 + 7922563 TGTCTTT-TT i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9467191 594 - 31815103 I e mm10.chr5 124809033 158 + 151834684 I e proCoq1.NW_012154285v1 6714101 596 - 9870158 I e dasNov3.JH568189 836649 0 - 1116856 C e canFam3.chr26 33156920 0 - 38964690 C e nomLeu3.chr10 97865657 0 + 106955855 C a score=24387.000000 s hg38.chr12_KI270834v1_alt 67591 4 + 119498 tttt s panTro5.chr12 127353681 4 + 137163284 tttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125704900 4 + 135337776 tttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8217842 4 - 8369578 tttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97865657 3 + 106955855 -ttg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123991013 4 + 133663169 cttt i rheMac8.chr11 C 0 I 1 s macFas5.chr11 128238405 4 + 137757926 tttt i macFas5.chr11 C 0 I 1 s macNem1.NW_012010578v1 10637742 4 - 16319837 tttt i macNem1.NW_012010578v1 C 0 I 1 s cerAty1.NW_012001186v1 12261357 4 + 20526591 tttt i cerAty1.NW_012001186v1 C 0 I 1 s chlSab2.chr11 119233226 1 + 128539186 t--- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 563659 4 + 6255621 CTTT i manLeu1.NW_012103587v1 C 0 I 12909 s colAng1.NW_012116043v1 4610668 4 - 8658521 tttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114810338 4 + 124281992 tttt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 454818 4 - 9212255 tttt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2869571 4 + 4466143 tttt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1576134 4 + 5364348 tttt i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9467191 594 - 31815103 I e mm10.chr5 124809033 158 + 151834684 I e proCoq1.NW_012154285v1 6714101 596 - 9870158 I e dasNov3.JH568189 836649 0 - 1116856 C e canFam3.chr26 33156920 0 - 38964690 C e otoGar3.GL873618 4303014 0 + 7922563 C a score=4181212.000000 s hg38.chr12_KI270834v1_alt 67595 507 + 119498 tttttgagacagaatctcgctctgtcgcccagattagagtgcagtggcaccatcataggtcactgcagcctcgacctcctgggctcaaatgagcctctcacctcagcctccctagtggctgggactataggcgcacaccaccacgctgcctggc-tga--------------------------------t------------------t-ttttttttctt--tgagacagggtctcactctgttgcccagactggagtgc-agtggtgtgatcttggctcaccacaacctccacctctcgggttcaagcgattctctcacctcagcctcctgagtagctgggattacaggtgtgcaccactactgcccggctaatttttgtatttttagtagagatggagttttgccatgttgtccaggctggtcttgaactcctgacctcaaatgatccacccgccttggcctcccaaagtgctgggattacaggtgtgagccaccacacccggccctgatttttgtattttttgtagagacagggtctcgccacattgcccaggctgg s panTro5.chr12 127353685 505 + 137163284 tttttgagacagaatctcgctctgtcgcccagattagagtgcagtggcaccatcata-gtcactgcagcctcgacctcctgggctcaaatgagcctctcacctcagcctccctagtggctgggactataggcgcacaccaccacactgcctggc-tga---------------------------------------------------t-ttttttttctt--tgagacagggtctcactctgttgcccagactggagtgc-agtggtgcgatcttggctcaccacaacctccacctctcgggttcaagcgattctctcacctcagcctcctgagtagctgggattacaggtgcgcaccactactgcccggctaatttttgtatttttagtagagatggagttttgccatgttgtccaggctggtcttgaactcctgacttcaaatgatccacccgctttggcctcccaaagtgctgggattacaggtgtgagccaccacacccggccctgatttttgtattttttgtagagacagggtctcgccacattgcccaggctgg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125704904 507 + 135337776 tttttgagacagaatctcgctctgtcgcccagattagagtgcagtggcaccatcata-gtcactgcagcctcgacctcttgggctcaaatgagcctctcacctcagcctccctagtggctgggactataggcgcacaccaccacgctgcctggcttga--------------------------------t------------------t-ttttttttctt--tgagacagggtctcactctgttgcccagactggagtgc-agtggtgcgatcttggctcaccacaacctccacctctcgggttcaagcgattctctcacctcagcctcctgagtagctgggattacaggtgcgcaccactactgcccggctaatttttgtatttttagtagagatggagttttgccatgttgtccaggctggtcttgaactcctgacctcaaatgatccacccgctttggcctcccaaagtgctgggattacaggtgtgagccaccacacccggccctgatttttgtattttttgtagagacagggtctcgccacattgcccaggctgg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8217846 507 - 8369578 tttttgagacagaatctcgctctgtcgcccagattagagtgcagtggcaccatcataggtcactgcagcctcgacttcctgggctcaaatgagcctctcacctcagcctccctagtggctgggactataggcgcacaccaccacgctgcctggc-tga--------------------------------t------------------t-ttttttttctt--tgagacagggtctcactctgttgcccagactggagtgc-agtggtgcaatcttggctcaccacaacctccacctctcgggttcaagcgattctcccacctcagcctcctgagtagctgggattacaggtgcgcaccactactgcccggctaatttttgtatttttagtagagatggagttttgccatgttgtccaggctggtcttgaactcctgacctcaaatgatccacccgccttggcctcccaaagtgctgggattacaggtgtgagccaccacaccctgccctgatttttgtattttttgtagagacagggtcttgccacattgcccaggctgg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97865660 511 + 106955855 tttttgagacagaatctcgctttgtcacccagattagagtgcagtggcaccatcatagctcactgcagccttgacctcctgggctcaaatgagcctctcacctcagcctccctagtggctgggactataggcgcacaccaccacgctgcctggc-tgt----------------------tttt------t------------------t-ttttttttctt--tgagacaggatctcactctgttgcccagactggagtgc-agtggtgcgatctcagctcaccactacctccacctctcgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggtatgtaccactactgcctggctaatttttatatttttagtagagatggagttttgccatgttggccaggctggtcttgaactcctgacctcaaatgatccacccgccttggcctcccaaaatgctgggattacaggtgtgagccaccacacccggccctgatttttgtattttttgtagagataggatctcgccacgttgcccaggccgg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123991018 504 + 133663169 tttttgagacagagtcttgctctgtcacccaggttagagtgcagtggcaccatcatagctcactgcagcctcgaccccctgggctcaagtgagcctctcacctcagccttcctagtggctgggactataggcgcacaccaccacgctgcctggc-tga---------------------------------------------------t-tttcttttctt--tgagccagggtctcactctgttgcccagactggagttc-tgtggtgcgatctcggctcaccacaacctccgcctcctgggttcaagcgattctcccacctcagcctcctgagtagctgggattacaggtgcacaccactactgcccggctaatttttgtatttttagtagaaatggagttttgccatgttggccagacaggtcttgaactcctgacctcaaatgatccacccgccttggcctcccaaagtgctgggattacaggtgtgaaccaccacacccagccctgatttttg--ttttttatagagacagggtcttgccatattgcccaggcCAG i rheMac8.chr11 I 1 C 0 s macFas5.chr11 128238410 506 + 137757926 tttttgagacagagtcttgctctgtcacccaggttagagtgcagtggcaccatcatagctcactgcagcctcgaccccctgggctcaagtgagcctctcacctcagccttcctagtggctgggactataggcgcacaccaccacgctgcctggc-tga---------------------------------------------------t-tttcttttctt--tgagccagggtctcactctgttgcccagactggagttc-tgtggtgcgatctcggctcaccacaacctccgcctcctgggttcaagcgattctcccacctcagcctcctgagtagctgggattacaggtgcacaccactactgcccggctaatttttgtatttttagtagaaatggagttttgccatgttggccagacaggtcttgaactcctgacctcaaatgatccacccgccttggcctcccaaagtgctgggattacaggtgtgaaccaccacacccagccctgatttttgtattttttatagagacagggtcttgccacattgcccaggcCAG i macFas5.chr11 I 1 C 0 s macNem1.NW_012010578v1 10637747 506 - 16319837 ttttggagacagagtcttgctctgtcacccaggttagagtgcagtggcaccatcatagctcactgcagcctcgaccccctgggctcaagtgagcctctcacctcagccttcctagtggctgggactataggcgcacaccaccacgctgcctggc-taa---------------------------------------------------t-tttcttttctt--tgagccagggtctcactctgttgcccagactggagttc-tgtggtgcgatctcggctcaccacaacctccgcctcctgggttcaagcgattctcccacctcagcctcctgagtagctgggattacaggtgcacaccactactgcccggctaatttttgtatttttagtagaaatggagttttgccatgttggccagacaggtcttgaactcctgacctcaaatgatccacccgccttggcctcccaaagtgctgggattacaggtgtgaaccaccacacccagccctgatttttgtattttttatagagacagggtcttgccacattgcccaggcCAG i macNem1.NW_012010578v1 I 1 C 0 s cerAty1.NW_012001186v1 12261362 506 + 20526591 tttttgagacagagtcttgctctgtcacccaggttagagtgcagtggcaccatcatagctcactgcagcctcgaccccctgggctcaagtgagcctctcacctcagccttcctagtggctgggactataggcacacaccaccacgctgcctggc-tga---------------------------------------------------t-tttcttttctt--tgagccagggtctcactctgttgcccagactggagtgc-agtggtgtgatctcggctcaccacaacctccgcctcctgggttcaagcgattttcccacctcagcctcctgagtagctgggattacaggtgcgcaccactactgcccggctaatttttgtatttttagtagaaatggagttttgccatgttgaccaggcaggtcttgaactcctgacctcaaatgatccacccgccttggcctcccaaagtgctgggattacaggtgtgagccaccacactcagccctgatttttgtattttttatagagacagggtcttgccacattgtccaggcCAG i cerAty1.NW_012001186v1 I 1 C 0 s chlSab2.chr11 119233227 506 + 128539186 tttttgagacagagtcttgctctgtcacccaggttagagtgcagtggtatcatcatagctcactgcagcctcgaccccctgggctcaagtgagcctctcacctcagccttcctagtggctgggattataagcacacaccaccacgctgcctggc-tga---------------------------------------------------t-tttcttttctt--tgagccagggtctcactctgttgcccagactggtgtgc-agtggtatgatctcggctcaccacaacctccgcctcctgggttcaagcgattctcccacctcagcctcctgagtagctgggattacaggtgcgcaccactactgcccggctaatttttgtatttttagtagaaatggagttttgccatgttggccagacaggtcttaaactcctgacctctaatgatccacccgccttggcctcccaaagtgctgggattacaggggtgagctaccacacccagccctgatttttgtattttttatagagacagggtcttgccacattgcccaggcCAG i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4610672 505 - 8658521 tttttgagacagagtcttgctctgtcacccaggttagagtgcagtggcgctatcatagctcactgcagcttcgaccccctgggctcaagtgagcctctcacctcagccttcctagtggctgggactataggcgcacatcaccacgctgcctggc-tga---------------------------------------------------tgttttttttctt--tgatccagggtctcactctgttgcccagactggagtgc-agtggtgcgatctcggctcaccacaacctccgcctcctgggttcaagcgattttccttcctcagcctcctgagtagctgggattacaggtgcacaccagtactgcctggctaatttttgtatttttagtagaaatggagttttgccatgttgaccaggcaggtcttgaactcttgacctcaaatgatccacccgccttggcctcccaaagtgctgggattacgggtgtgagccaccgcacccagccctgatttttgtattttttatagagaca--gtcttgccacattgtccaggcCAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114810342 516 + 124281992 tttgtctgacagtgtcactct--gtcacctaggttagagtgcagtggcaccatcacaactcactgcagcctcgacctcctgggctcaagtgatcctctcacctcagcctccctagtcactgggactacaggtgcacaccaccatgctgcctggc-tga----------------------tttttgtagat------------------t-ttttgtgtgtgtgtgagacaaggtctcaccctcttgcccagactggagtgt-agtggtgcgatctcagctcgctgcaacctctacctcccgggttcaagagattctcctgcctcagcctcctaagtagctgagattacaagtgcacaccactactgcctggctaatttttgtatttttagtagagatggagttttgccatgttggccaggctggtcttgaactgctgaccgcaaatgatccacctgccttggcctccaaaagtgctgggattacaggcgtgaacca-tacacccggtcctgatttttgtattttttgtagagacagggtctcaccatgttgcccaggctgg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 454822 511 - 9212255 tttttctgacagagtctcact-------ctggtttagagtgcagcctcg-------agctcactgcagcctcgacctcctgggctcaagtgagcctctcacctcagcctccctagtcaccgggactacaggtgcacaccaccatgcttcctggc-tgatgtttttttttgttttgttttgttttggttgtt------------------t-ttttttttttttgtgagacagggtctcaccctcttgcccagactggagtgtaagtggtgtgatctcagcgcgctgcaacctccacctcccgggttcaagagattctcctgcctaagcctcct----------------aagtgcacaccactactgcctggctattttttgtatttttagtggagatggagttttgccacgttggccaggctggtctggaactcctgaccgcaaatgatcctcctgccttggcctcccaaagttctgggattacaggcgtgagcca-tacacctggtcctgatttttgtattttttgtagagacagggtcttgccacgttgcccaggctgg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2869575 518 + 4466143 tttttctgacagagtctcactctgtcacctaggttaggatgcaacagcaccatcccagctcactgcagcctcgagctgctgggctcaagcgagcctctcacctcagcctccctagtcactgggactacaggtgcacaccaccatgctgcctggc-tga----------------------tttttgtagat------------------t-tttttttttttggtgagacagggtctcactctcttgcccagactggagtgt-agtggtgcgatctcagctcgctgcaacctccacctcccgggttcaagagattctcctgcctaagcctcctaagtagctgggattacaagtgcacaccactactgcctggctaatttttgtatttttagtagagatggagttttgccatgttggccaggctggtcttgaactcttgaccacaaatgatccacctgccttggcctccaaaagtgctgggattacaggcgtgagcca-tacacccggtcctgatttttgtattttttgtagagacggggtctcgccacgttgcctaggctgg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1576138 535 + 5364348 tttttctgacagagtctcactctgtcacctaggttagagtgcagtggcatcatcacagctcactgcagccttgacctcctgggctcaagcaagcctctcacctcagcctccctagtcactgggactacaggtgcacaccaccatgctgcctggc-tga----------------------tttttgtagttttttttgtttgttttttgt-ttttttgtgtgtgtgagacagggtcttaccctcttgcccagtctggagtgg-agtggtgcgatctcagctcgctgtaacctccacttcccaggttcaagagattctcctgcctcagcctcctaagtaggtggtattacaagcacacaccactaccgcctggctaatttttgtatttttagtagagatggagttttgccatgttggtcaggctggtct-gaactcctgactgcaaatgatccacctgccttgggcaccaaaagtggtggaataacaggtgtgagcca-tacacctggtcctgatttttgtattttttgtagagacagggtctcgccacgttgcccagactgg i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9467191 594 - 31815103 I e mm10.chr5 124809033 158 + 151834684 I e proCoq1.NW_012154285v1 6714101 596 - 9870158 I e dasNov3.JH568189 836649 0 - 1116856 C e canFam3.chr26 33156920 0 - 38964690 C e otoGar3.GL873618 4303014 0 + 7922563 C e manLeu1.NW_012103587v1 563663 12909 + 6255621 I a score=47480.000000 s hg38.chr12_KI270834v1_alt 68102 4 + 119498 GAGC s panTro5.chr12 127354190 4 + 137163284 GAGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125705411 4 + 135337776 GAGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8218353 4 - 8369578 GAGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866171 4 + 106955855 GAGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123991522 4 + 133663169 GAGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128238916 4 + 137757926 GAGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10638253 4 - 16319837 GAGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12261868 4 + 20526591 GAGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119233733 4 + 128539186 GAGC i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4611177 4 - 8658521 GAGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114810858 4 + 124281992 GAGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 455333 4 - 9212255 GAGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870093 4 + 4466143 GAGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1576673 4 + 5364348 GAGT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6714697 4 - 9870158 GAGC i proCoq1.NW_012154285v1 I 596 C 0 s dasNov3.JH568189 836649 4 - 1116856 GACC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9467191 594 - 31815103 I e mm10.chr5 124809033 158 + 151834684 I e canFam3.chr26 33156920 0 - 38964690 C e otoGar3.GL873618 4303014 0 + 7922563 C e manLeu1.NW_012103587v1 563663 12909 + 6255621 I a score=129343.000000 s hg38.chr12_KI270834v1_alt 68106 12 + 119498 ATCTTTTTAATC s panTro5.chr12 127354194 12 + 137163284 ATCTTTTTAATC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125705415 12 + 135337776 ATCTTTTTAATC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8218357 12 - 8369578 ATCTTTTTAATC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866175 12 + 106955855 ATCTTTTTAATC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123991526 12 + 133663169 ATCTTTTTAATC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128238920 12 + 137757926 ATCTTTTTAATC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10638257 12 - 16319837 ATCTTTTTAATC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12261872 12 + 20526591 ATCTTTTAAATC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119233737 12 + 128539186 ATCTTTTTAATC i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4611181 12 - 8658521 ATCTTTTTAATC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114810862 12 + 124281992 ATCTTTGTAATT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 455337 12 - 9212255 ATCTTTGTAATT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870097 12 + 4466143 ATCTTTGTAATT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1576677 12 + 5364348 ATCTTTGTAATT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6714701 12 - 9870158 ATCTTTTTCATC i proCoq1.NW_012154285v1 C 0 C 0 s mm10.chr5 124809191 12 + 151834684 ATCTTTCTCCTT i mm10.chr5 I 158 C 0 s dasNov3.JH568189 836653 12 - 1116856 ATTTTTTTAGTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9467191 594 - 31815103 I e canFam3.chr26 33156920 0 - 38964690 C e otoGar3.GL873618 4303014 0 + 7922563 C e manLeu1.NW_012103587v1 563663 12909 + 6255621 I a score=93036.000000 s hg38.chr12_KI270834v1_alt 68118 9 + 119498 --TCTCTTTCC s panTro5.chr12 127354206 9 + 137163284 --TCTCTTTCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125705427 9 + 135337776 --TCTCTTTCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8218369 9 - 8369578 --TCTCTTTCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866187 9 + 106955855 --TCTCTTTCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123991538 9 + 133663169 --TCTCTTTCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128238932 9 + 137757926 --TCTCTTTCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10638269 9 - 16319837 --TCTCTTTCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12261884 9 + 20526591 --TCTCTTTCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119233749 9 + 128539186 --TCTCTTTCC i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4611193 9 - 8658521 --TCTCTTTCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114810874 9 + 124281992 --TCTCTTTCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 455349 9 - 9212255 --TCTCTTTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870109 9 + 4466143 --TCTCTTTCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1576689 9 + 5364348 --TCTCTTTCT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6714713 8 - 9870158 --TCTCGTCT- i proCoq1.NW_012154285v1 C 0 C 0 s mm10.chr5 124809203 3 + 151834684 --TCT------ i mm10.chr5 C 0 C 0 s canFam3.chr26 33156920 9 - 38964690 --TCTCCTTCT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 836665 11 - 1116856 TATCTGTTTCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9467191 594 - 31815103 I e otoGar3.GL873618 4303014 0 + 7922563 C e manLeu1.NW_012103587v1 563663 12909 + 6255621 I a score=66234.000000 s hg38.chr12_KI270834v1_alt 68127 4 + 119498 TTTC s panTro5.chr12 127354215 4 + 137163284 TTTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125705436 4 + 135337776 TTTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8218378 4 - 8369578 TTTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866196 4 + 106955855 TTTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123991547 4 + 133663169 TTTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128238941 4 + 137757926 TTTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10638278 4 - 16319837 TTTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12261893 4 + 20526591 TTTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119233758 4 + 128539186 TTTC i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4611202 4 - 8658521 TTTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114810883 4 + 124281992 TTTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 455358 4 - 9212255 TTTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870118 4 + 4466143 TTTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1576698 4 + 5364348 TTTC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9467785 4 - 31815103 TTTC i micMur3.chr21 I 594 C 0 s proCoq1.NW_012154285v1 6714721 4 - 9870158 TTTC i proCoq1.NW_012154285v1 C 0 C 0 s mm10.chr5 124809206 4 + 151834684 CTCC i mm10.chr5 C 0 C 0 s canFam3.chr26 33156929 4 - 38964690 TTTC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 836676 4 - 1116856 TTTC i dasNov3.JH568189 C 0 C 0 e otoGar3.GL873618 4303014 0 + 7922563 C e manLeu1.NW_012103587v1 563663 12909 + 6255621 I a score=3551995.000000 s hg38.chr12_KI270834v1_alt 68131 256 + 119498 AAGGTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCGGTCGCAAAGTCCTTTCTAGGTAAGTCACAGCTGTTATGGGAACTGCATTATTGATAAAACAAAGCAA---TTTAT-----TTTCCCTTTTCTGACTTTGAATTCTGGTCTTGTAGATTTCTTCACTGGAAA-ACCCTATGGTAACAAATGGCTTTCAATTTTGTTAGTATGTTTTTGGTTTATATTTGGTGTTTTAGTCC s panTro5.chr12 127354219 256 + 137163284 AAGGTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCGGTTGCAAAGTCCTTTCTAGGTAAGTCACAGCTGTTATGGGAACTGCATTATTGATAAAACAAAGCAA---TTTAT-----TTTCCCTTTTCTGACTTTGAATTCTGGTCTTGTAGATTTCTTCACTGGAAA-ACCCTATGGTAACAAATGGCTTTCAATTTTGTTAGTATGTTTTTGGTTTATATTTGGTGTTTTAGTCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125705440 256 + 135337776 AAGGTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCGGTTGCAAAGTCCTTTCTAGGTAAGTCACAGCTGTTATGGGAACTGCATTATTGATAAAACAAAGCAA---TTTAT-----TTTCCCTTTTCTGACTTTGAATTCTGGTCTTGTAGATTTCTTCACTGGAAA-ACCCTATGGTAACAAATGGCTTTCAATTTTGTTAGTATGTTTTTGGTTTATATTTGGTGTTTTAGTCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8218382 256 - 8369578 AAGGTATGGTAAATAACTCTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCGGTCGCAAAGTCCTTTCTAGGTAAGTCACAGCTGTTATAGGAACTGCATTATTGATAAAACAAAGCAA---TTTAT-----TTTCCCTTTTCTGACTTTGAATTCTGGTGTTGTAGATTTCTTCACTGGAAA-ACCCTATGGTAACAAATGGCTTTCAATTTTGTTAGTATGTTTTTGGTTTATATTTGGTGTTTTAGTCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866200 256 + 106955855 AAGGTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCACGCGGTCGCAAAGTCCTTTCTAGGTAAGTCACAGCTGTTACGGGAACTACATTATTGATAAAACAAAGCAA---TTTAG-----TATCACTTTTCTGCCTTTGAATTCTGGTCTTGTAGATTTCTTCACTGGAAA-ACCCTGTGGTAACAAATGGCTTTCAATTTTGTTAGTATGTTTTTGGTTTATATTTGGTGTTTTAGTCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123991551 256 + 133663169 AAGGTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCGGTTGCAAAGTCATTTCTAGGTAAGTCACAGCTGTTATGGGAACTACATTATTGATACAACAAAGCAA---TTTAT-----TATCACTTCTCTGACTTTGAATTCTGGTCTTGTAGATTTCTTCACTGGAAA-ACCCTATGGTAACAAATGGCTTTCAATTTTGTTAGTATGTTTTTGGTTTATATTTGGTGTTTTAGCCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128238945 256 + 137757926 AAGGTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCGGTTGCAAAGTCATTTCTAGGTAAGTCACAGCTGTTATGGGAACTACATTATTGATACAACAAAGCAA---TTTAT-----TATCACTTCTCTGACTTTGAATTCTGGTCTTGTAGATTTCTTCACTGGAAA-ACCCTATGGTAACAAATGGCTTTCAATTTTGTTAGTATGTTTTTGGTTTATATTTGGTGTTTTAACCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10638282 256 - 16319837 AAGGTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCAGTTGCAAAGTCATTTCTAGGTAAGTCACAGCTGTTATGGGAACTACATTATTGATACAACCAAGCAA---TTTAT-----TATCACTTCTCTGACTTTGAATTCTGGTCTTGTAGATTTCTTCACTGGAAA-ACCCTATGGTAACAAATGGCTTTCAATTTTGTTAGTATGTTTTTGGTTTATATTTGGTGTTTTAGCCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12261897 256 + 20526591 AAGGTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCGGTTGCAAAGTCATTTCTAGGTAAGTCACAGCTGTTATGGGAACTACATTATTGGTACAACAAAGCAA---TTTAT-----TATCACTTCTCTGACTTTGAATTCTGGTCTTGTAGATTTCTTCACTGGAAA-ACCCTATGGTAACAAATGGCTTTCAATTTTGTTAGTATGTGTTTGGTTTATATTTGGTGTTTTAGCCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119233762 256 + 128539186 AAGGTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCGGTTGCAAAGTCATTTCTAGGTAAGTCACAGCTGTTATGGGAACTACATTATTGATACAACAAAGCAA---TTTAT-----TATCACTTCTCTGACTTTGAATTCTGGTCTTGTAGATTTCTTCACTGGAAA-ACCCTATGGTAACAAATGGCTTTCAATTTTGTTAGTATGTTTTTGGTTTATGTTTGGTGTTTTAGCCC i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4611206 256 - 8658521 AAGGTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCAGTTGCAAAGTCATTTCTAGGTAAGTCACAGCTGTTATGGGAACTACATTATTGATACAACAAAGCAA---TTTAT-----TATCACTTCTCTGACTTTGAATTCTGGTCTTGTAGATTTCTTCACTGGAAA-ACCCTATGGTAACAAATGGCTTTTAATTTTGTTAGTATGTTTTTGATTTATATTTGGTGTTTTAGCCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114810887 259 + 124281992 AAGGTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCAGTCGCAAAGTCATTTCTAGGTAAGTCTCAGCTGTTATGGGAACTACATTATCGATACAACGAAGCAATTTTTTAC-----TATTGCTTTTCTGACTTTGAATTCTGGTCTTGTAGATTTCTTCACCAGAAA-CCCCTGCGGTGACAAATGGCTTTCAATTTAGTTCGTATGTTTTTGGTTTATATTTGGTGTTTTAGTCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 455362 256 - 9212255 AAGGCATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCAGTCGCAAAGTCATTTCTAGGTAAGTCACAGCTGTTGTGGGAACTACATTATTGATACAACAAAGCAA---TTTAT-----TATCACTTTTCTGACTTTGAATTCTGGTCTTGTAGATTTCTTCACTGGAAA-CCTCTATGGTAAAAAATGGCTTTCAATTGTGTTCGTGTGTTTTTGGTTTATATTTGGTGTTTTAGTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870122 223 + 4466143 AAGGTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCTGTCGCGAAGTCATTTCTAGGTAAGTCACAGCTGTTATGGGAACTACATTATTGATACAACAAAGCAA---TTTACAATATTATCACTTTTCTGACTTTGAATTCTGGTCTTGTAGATTTCTTCACTAGAAA-CCTCTATGGTAACAAATGGCTTTCAATTTG-------------------------------------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1576702 255 + 5364348 -AGGTATGGTCAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCAGTCGCGAAGTCATTTCTAGGTAAGTCACAGCTGTTATGGGAACTACATTATTGATACAACAAAGCAA---TTTAT-----TATCACTTTTCCGACTTTGAATTCTGGTCTTGTAGATTTCTTCACTGGAAA-CCTCTATGGTAACACATGGCTTTCCATTTTGTTCGTATGTTTTTGGTTTATATTTGGTGTTTTAGTCT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9467789 238 - 31815103 AAGGTCTGGTAAACAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTGCATGCGGTGGCTAAGTCATTTCTAGGTAAGTCACAGCTACTATGGGGACTACATTGTTGGTATAACAAAGAGA---TTTAT-----TATCACTTTTCCGTCTTTGAATT-TGGTCCAGGAAATTCCTTCACTGGAAA-CTCCTATGGTA--AAATGGTTTT-------------TCATTTTAGGTCTATATT--GTGTTTTAGTCC i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6714725 240 - 9870158 AAGGTCTGGTAAACAACACTGGCATCGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTGCATGCGGTGGCTAAGTCATATTTAGGTAAGTCACAGCTATCGTGGGGGCTACATTGATGGTATAACAAAGCGA---TTTAT-----TATCACTTTTCCATCTTTGAATT-TGGTCCAGGAGATCCCTTCACCAGAAA-CCCCTGTGGTAACAGATGGCTTT-------------TTATTTTCGGTCTGTATT--GTGTTTTAGTCC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4303014 247 + 7922563 AAGGTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCTCTCCATGCAGTGGCTACGTCATTTTTAGGTAAGTCACAGCTACTATGGGGACTGGATTTTTGATATACCAAAGTGA---TTTGT-----TACCACTTTTCCAACTTTGAATT-TGGCCCCATTGATTCCTTCATTGGAAA-CCCCTGTGGTAACAAATGACTTTTGGTCTA------TGATTTTTGGTCTATATT--GAGTTACAGTTC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124809210 249 + 151834684 AAGGCCTAGTGAACAACACCGGCATTGATTGGTTCATGCCCTGGCCACCTCAGGCCTTGCATGCAGTGGCCAAGTCGTTTTTAGGTAAGCCACCACTGTTGTAGGGATTGC-TTAGCGGTCTCCTAAAGAAG------AT-----TGTCACTGTTCTGAC--CAAATCTTGGCCCAGTAGGTTGGTTCACCATAGATACCCTATGATAAGGAATAGCTTTGTATTGTAGGCATAGGGCTTGAGGTTATATTT--CACTCTAATCC i mm10.chr5 C 0 C 0 s canFam3.chr26 33156933 223 - 38964690 AAGGTCTTGTGAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCTCAAGCCCTGCACGCAGTCGCTAAGTCATTTTTAGGTACGT----------------GCAACA-------------AAAATGA---CTTGT-----TGGCGCCTTTCTGACTTTGAATTTTGGTCCAGTGGATCCTGTCACCGTTCG-CCCCTAAGGCCATAAATTGTTTTTAAGTTTGTTAGCATATTTTTGGTTTACACT----GTTTTGATCT i canFam3.chr26 C 0 I 215 s dasNov3.JH568189 836680 244 - 1116856 CAGGTCTGGTAAATAACACTGGTATTGACTGGCTCATGCCCTGGCCCGCGCAAGCCCTGTACGCAGTTGCTAAATCATTTTTAGGTAAGTCACAGCTGCTATTGGGTCTATATTGTTGGTACAACAAAGCAG---TTTGT-----TATCAATTTTCTGACACTGAATTTTGGTTCAGTGGATTACTTCA----GAA-TGGCCATGTTAGTGAATGGTTTTTTATTTTATTGGTTTGTTTTTGGTTGATACT--ATGTCT------ i dasNov3.JH568189 C 0 C 0 e manLeu1.NW_012103587v1 563663 12909 + 6255621 I a score=2743523.000000 s hg38.chr12_KI270834v1_alt 68387 217 + 119498 AAAGACATTTCAGGAGACTTAGCAAGGACAATTTAGGATAAAAATTGATTAGGTGTTCTCCACAGcagcagttggcaaaaccatggtctgc-tgtctagt-tggccccttac----ttgttt--tagtaaataaagttttattggta-----cacag----actcactcattaat----------------------------------------------------------------------------------taacatattgtctctggctgcttttatgctac-aaccgcaaagctgaataattgcaacag s panTro5.chr12 127354475 217 + 137163284 AAAGACATTTCAGGAGACTTAGCAAGGACAATTTAGGATAAAAATTGATTAGGTGTTCTCCACAGcagcagttggcaaaaccatggtctgc-tgtctagt-tggccccttac----ttgttt--tagtaaataaagttttattggta-----cacag----actcactcattaat----------------------------------------------------------------------------------taacatattgtttctggctgcttttatgctac-aactgcaaagctgaataattgcaacag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125705696 217 + 135337776 AAAGACATTTCAGGAGACTTAGCAAGGACAATTTAGGATAAAAATTGATTAGGTGTTCTCCACAGcagcagttggcaaaaccatggtctgc-tgtctagt-tggccccttac----ttgttt--tagtaaataaagttttattggta-----cacag----actcactcattaat----------------------------------------------------------------------------------taacatattgtttctggctgcttttatgctac-aactgcaaagctgaataattgcaacag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8218638 217 - 8369578 AAAGACATTTCAGGAGACTTAGCAAGGACAATTTAGGATAAAAGTTGATTAGGTGTTCTCCACAGcagcagttggcaaaaccatggtctgc-tgtctagt-tggccccttac----ttgttt--tagtaaataaagttttattggta-----cacag----actcactcattaat----------------------------------------------------------------------------------taacatattgtctctggctgcttttatgctac-aactgcaaagctgaataattgcaacag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866456 215 + 106955855 AAAGACATTTCAGGAGACTTAGCAAGGACAATTTAGGATAAAAATTGATTAGGTGTTCTCCACAGcagcagttggcaaagccatggtctgc-tgtctagt-tggcccctgac----ttgttt--tagtaaataaagttttattggta-----cacag----actcactcattaat----------------------------------------------------------------------------------taacatactgtctctggctgcttttatgctac-aactgcaaagctgaataattgca--ag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123991807 213 + 133663169 AAAGACATTTCAGGAGACCTAACAAGGACAATTTAGGATAAAAATTGATTAGGTGTTCTCCACAGCAGCCgttggcaaaaccatggtctgc-tgtctagt-tggccc----c----ttgttt--tagtaaataaagttttattggta-----cacag----actcactcattaat----------------------------------------------------------------------------------taacatattatctccggctgcttttatgctac-aactgcaaagctgaataattgcaacag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128239201 213 + 137757926 AAAGACATTTCAGGAGACCTAACAAGGACAATTTAGGATAAAAATTGATTAGGTGTTCTCCACAGCAGCCgttggcaaaaccatggtctgc-tgtctagt-tggccc----c----ttgttt--tagtaaataaagttttattggta-----cacag----actcactcattaat----------------------------------------------------------------------------------taacatattgtctccggctgcttttatgctac-aactgcaaagctgaataattgcaacag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10638538 213 - 16319837 AAAGACATTTCAGGAGACCTAACAAGGACAATTTAGGATAAAAATTGATTAGGTGTTCTCCACAGCAGCCgttggcaaaaccatggtctgc-tgtctagt-tggccc----c----ttgttt--tagtaaataaagttttattggta-----cacag----actcactcattaat----------------------------------------------------------------------------------taacatattgtctccggctgcttttatgctac-aactgcaaagctgaataattgcaacag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12262153 217 + 20526591 AAAGACATTTCAGGAGACTTAACAAGGACAATTTAGGATAAAAATTGATTAGGTGTTCTCCACAGcagcagttggcaaaaccatggtctgc-tgtctagt-tggccccttac----ttgttt--tagtaaataaagttttattggta-----cacag----actcactcattaat----------------------------------------------------------------------------------taacatattgtctccggctgcttttatgctac-aactgcaaagctgaataattgcaacag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119234018 217 + 128539186 AAAGACATTTCAGGAGACTTAACAAGGACAATTTAGGATAAAAATTGATTAGGTGTTCTCCACAGcagcagttggcaaaaccatggtctgc-tgtctagt-tggccccttac----ttgttt--tagtaaataaagttttattgata-----cacag----actcactcattaat----------------------------------------------------------------------------------taacatattgtctccagctacttctatgctac-aactgcaaagctggataattgcaacag i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4611462 217 - 8658521 AAAGATATTTCAGGAGACTTAACAAGGACAATTTAGGATAAAAATTGATTAGGTGTTCTCCACAGcagcagttggcaaaaccatggtctgc-tgtctagt-tggccccttac----ttgttt--tagtaaataaagttttattagta-----cacag----actcactcattaat----------------------------------------------------------------------------------taacatattgtctctggctgctcttatgctac-aactgcaaagctgaataattgcaacag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114811146 220 + 124281992 AAAGACACTTCAGGAAACTTAACAAGGACAATGTAGGTTAAATATTGATTAGGTGTCCTCCACAGcagcagttggcaaaaccat-gcctgc-tgtctagt-tggccccttac----ttgctt--cagtaaataaagttttattggtacacagcacag----actcactcattaat----------------------------------------------------------------------------------taacatattgtctctggctgcttttg-gctac-aactgcaaagctgaataactgcaacag i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 455618 222 - 9212255 AAAGACACTTCAGGAAACTTAACAAGGACAATTTAGGATAAACATTGATTAGGTGTCCTCCACAGcagcagttggcaaaaccatggcctgc-tgtctggt-tggccccttac----ttgctt--gagtaaataaagttttattggtacacagcacag----actcgctcattaat----------------------------------------------------------------------------------taacatattgtctctagctgcttttatgctac-aactgcaaagctaaataactgcagcag i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870345 173 + 4466143 -------------------------------------------------TAGGTGTCCTCCACAGcagcagttggcaaaaccatggcctgc-tgtctagt-tggccccttac----ttgctt--tagtaaataaagttttattggtacacagcacag----actcactcattaat----------------------------------------------------------------------------------taacatattgtctctggctgcttttatgctgc-aactgcaaagctgagtaactgcaacag i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1576957 222 + 5364348 AAAGACACTTCAGGAAACTTAACAAGGACAATTCAGGATAAAAATTGATTAGGTGTCCTCCACAGcagcagttggcaaaaccatggcctgc-tgtctagt-tggccccttac----tcgctt--tagtaaataaagttttatcggtacacagcacag----actcactcattaat----------------------------------------------------------------------------------taacatattgtctctggctgcttttatgctac-aactgcaaagctgaataactgcaacag i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9468027 214 - 31815103 AAAGGGATTTCAGGAGACTTA-CAAGGGCAATTTAGGATAAAAATTGACTAGGTGTCATCTAAAATATgagttggcaaa-ccatggcatgc-tgccaaat-tgg-ccaccac----ttgttt--tggtaaataaagttttattggta-----cacag----actcactcactaat----------------------------------------------------------------------------------taacatactgcctatggctgctttaatgctac-aaccgcaaagctgaataattgcaacag i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6714965 215 - 9870158 AGAGGGATTTCAGGAGACTTA-CAAGGTCAATTTAGGATAAAAATTGATTAGGTGTCATCTAAAGcatgagttggcaaa-ccatggcctgc-tgccagat-tggcccaccgc----ttgttt--tggtaaataaagttttattggta-----tacgg----actcactcattaat----------------------------------------------------------------------------------taacacactgcctgtggccgctttaatgctac-agctgcaaagctgagtaattgcaacag i proCoq1.NW_012154285v1 C 0 I 3690 s otoGar3.GL873618 4303261 296 + 7922563 -GAGGGATTTCAGGAGACTTA-CATGGACAATTCAGGATAAAAATTGATTAGGTGTCATTTAAAGcatgagttggcaaa-ccatggcctgc-tgccaaat-tggcccatcat----ttgttt--tggtaaataaagttttattggta-----cacag----actcactcattaacatactttctttgtggctttttacttcttctgtattcctttctgtttaataaaaattctatcttactaTGGGGTTGGGGGGAGAAacatactttctgtggctacattaatgctat-aatagcagagttgaataactgcaagag i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124809459 139 + 151834684 AAAGGCAT---------------------------------------------------------CAGAAGTTTTCACA--TTTGGCCTGC-TGCCAAAT-GTGCCCCCCCCCCGATTGTTT--TGATGATTAAAGTTTTATTGGCC-----CACA-------------CTTCAT----------------------------------------------------------------------------------GAACATTTTGTCTTCAGCCCTTCCTATACTAC-ATCC--------------TTGCCGGAG i mm10.chr5 C 0 C 0 s canFam3.chr26 33157371 202 - 38964690 AAAGGGATTTCAGGGAACTTA-CAAGGACAATTTAGGATAAA-ATTGATCAGATACCATC-AAAGCAGGGGTTGGTGCAccaattg---------------tgacccatagc----ttgttt--tggtaaataaagtgtgattggaa-----cactg----acttatttgtcagt----------------------------------------------------------------------------------gaacatggtggctctggctgcttttaagcttcaaactgcaaggttgaggagttagagcag i canFam3.chr26 I 215 C 0 s dasNov3.JH568189 836924 217 - 1116856 AAAGTGATTTGAAGGGACTTA-CAAGGACAATATAGGATAAAAATTGATCAGGTGTCATCTAAAGcagggcttgacaag-ccatgacctgtgggtcaaatctgtcctgccac----ctgttttgtggtaaataaa-----atgggaa-----cacagcttcattcattcactggt----------------------------------------------------------------------------------ttacatattttc-atggctgctttcgtgctac-aacagcagagttgagtaattgcagcag i dasNov3.JH568189 C 0 C 0 e manLeu1.NW_012103587v1 563663 12909 + 6255621 I a score=67773.000000 s hg38.chr12_KI270834v1_alt 68604 4 + 119498 agac s panTro5.chr12 127354692 4 + 137163284 agac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125705913 4 + 135337776 agac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8218855 4 - 8369578 agac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866671 4 + 106955855 agac i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992020 4 + 133663169 agac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128239414 4 + 137757926 agac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10638751 4 - 16319837 agac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12262370 4 + 20526591 agac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119234235 4 + 128539186 agac i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4611679 4 - 8658521 agac i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114811366 4 + 124281992 agac i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 455840 4 - 9212255 agac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870518 4 + 4466143 agac i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577179 4 + 5364348 agac i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9468241 4 - 31815103 ggac i micMur3.chr21 C 0 I 108 s otoGar3.GL873618 4303557 4 + 7922563 agac i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124809598 4 + 151834684 AGAC i mm10.chr5 C 0 C 0 s canFam3.chr26 33157573 4 - 38964690 agac i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 837141 4 - 1116856 aaac i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6715180 3690 - 9870158 I e manLeu1.NW_012103587v1 563663 12909 + 6255621 I a score=796962.000000 s hg38.chr12_KI270834v1_alt 68608 88 + 119498 ------------------cgtatgagtactgt---tcggctctttgta-----gaaaacatgtgctgg-cctctA-TCCAAAGAATGCT-CCAAGGACAATTCAGCAAAC--ATTCTGC s panTro5.chr12 127354696 86 + 137163284 ------------------cgtatgagtactgt---ttggctctttgta-----gaaaac--gtgctgg-cctctA-TCCAAAGAATGCT-CCAAGGACAATTCAGCAAAC--ATTCTGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125705917 86 + 135337776 ------------------cgtatgagtactgt---ttggctctttgta-----gaaaac--gtgctgg-cctctA-TCCAAAGAATGCT-CCAAGGACAATTCAGCAAAC--ATTCTGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8218859 88 - 8369578 ------------------cgtatgagtactgt---ttggctctttgta-----gaaaacatgtgctgg-cctctA-TCCAAAGAATGCT-CCAAGGACAATTCAGCAAAC--ATTCTGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866675 88 + 106955855 ------------------tgtatgagtaccat---ttggctctttgta-----gaaaacatgtgctgg-cctctA-CCCAAAGAATGAT-CCAAGGACAATTCAGCAAAC--ATTCTGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992024 88 + 133663169 ------------------tgtatgAGTACTGT---TTGGCTCTTTGTA-----GAAAACATATGCTGG-CCTCTA-CCCAAAAAATGCT-CCAAGGACAATTCAGCAAAC--ATTCTGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128239418 88 + 137757926 ------------------tgtatgagtactgt---ttggctctttgta-----gaaaacatatgctgg-cctctA-CCCAAAGAATGCT-CCAAGGACAATTCAGCAAAC--ATTCTGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10638755 88 - 16319837 ------------------tgtatgAGTACTGT---TTGGCTCTTTGTA-----GAAAACATATGCTGG-CCTCTA-CCCAAAGAATGCT-CCAAGGACAATTCAGCAAAC--ATTCTGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12262374 88 + 20526591 ------------------tgtgtgagtactgt---ttggctctttgta-----gaaaacatgtgctgg-cctctA-CCCAAAGAATGCT-CCAAGGACAATTCAGCAAAC--ATTCTGC i cerAty1.NW_012001186v1 C 0 I 580 s chlSab2.chr11 119234239 88 + 128539186 ------------------tatgtgagtactgt---ttggctctttgta-----gaaaacatgtgctgg-cctctA-CCCAAAGAATGCT-CCAAGGACAATTCAGCAAAC--ATTCTGC i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4611683 88 - 8658521 ------------------tgtatgagtactgt---ttggctctttgta-----gaaaacacgtgctgg-cctctA-CCCAAAGAATGCT-CCAAGGACAATTCAGCAAAC--ATTCTGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114811370 88 + 124281992 ------------------cagatgagcactgt---ttgcctgtttgta-----ggaaatgtgtgctgg-cctctC-CCCAAAGAATGCT-TCAAGGGCAATTCGGTAAAC--ATTCTGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 455844 88 - 9212255 ------------------catatgatcgctgt---ttgcctgtttgta-----gaaaatgtgtgctgg-cctctA-CCCAAAGAATGCT-CCAAGGACAATTTGGTAAAC--ATTCTGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870522 88 + 4466143 ------------------catatgatcactat---ttgcctgtttgta-----gaaaatgtgtgctgg-cttctA-CCCAAAGAATGCT-TCATGGACAGTTCGGTAAAC--ATTCTAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577183 88 + 5364348 ------------------cataggagcactat---ttgcctgtttata-----gaaaacgtgtgctgg-cctctA-CCCAAGGAATGCT-TCAAGGGCAATTCGGTCAAC--ATTCTGC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4303561 89 + 7922563 ------------------tgtaCTATTACTAT---GTGCCTCTTTGAATGAAGAAAAAAGTGTGCTGG-----TT-CCCCAAGAGTGCC-CCAAGAATCTTTGAGTAAAC--ATTATCA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124809602 75 + 151834684 ------------------AGTGCTGTTACTGT---TTATCTCTTTGTA-----GAGGAAATGT-------------CCCAAAGGTCGCCACCATGGAGATGCCAACACAG--GTTC--- i mm10.chr5 C 0 C 0 s canFam3.chr26 33157577 89 - 38964690 ------------------cacatggcccatgtagcttgaatatttact-----g-----ttatgctgatccttGC-CCCAAAGGATGCC-CGAAGGACCTTTTAGTGGACTGATTATCA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 837145 109 - 1116856 catatggttcgtaaggcctaaatgtttactat---ccgactctttata-----gaaaaatgttacaga-ccccCAGTACAAAGGATGCC-CCAGGAACCTTGCGGTAAACTGATTATTA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9468245 108 - 31815103 I e proCoq1.NW_012154285v1 6715180 3690 - 9870158 I e manLeu1.NW_012103587v1 563663 12909 + 6255621 I a score=79572.000000 s hg38.chr12_KI270834v1_alt 68696 20 + 119498 ATTCTCATTGAATT----TCTAGC s panTro5.chr12 127354782 20 + 137163284 ATTCTCATTGAATT----TCTAGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706003 20 + 135337776 ATTCTCATTGAATT----TCTAGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8218947 20 - 8369578 ATTCTCATTGAATT----TCTAGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866763 20 + 106955855 ATTCTCATTGAATT----TCTAGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992112 15 + 133663169 TTTCTC-----ATT----TCTAGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128239506 15 + 137757926 TTTCTC-----ATT----TCTAGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10638843 15 - 16319837 TTTCTC-----ATT----TCTAGC i macNem1.NW_012010578v1 C 0 C 0 s chlSab2.chr11 119234327 20 + 128539186 TTTCTCATTGAATT----TCTAGC i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4611771 15 - 8658521 TTTCTC-----ATT----TCTAGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114811458 20 + 124281992 ATTTGCCCTGAATT----TCTAGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 455932 20 - 9212255 ACTTGCCCTGAATT----TCTAGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870610 20 + 4466143 ATTTGCCCTGAATT----TCTAGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577271 20 + 5364348 ATTTGCCCGGAATT----TCTAGT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4303650 20 + 7922563 GTCAGTATCAAATT----TCTCTC i otoGar3.GL873618 C 0 I 4 s canFam3.chr26 33157666 20 - 38964690 GTCAGTGCTGAATT----TTCTCA i canFam3.chr26 C 0 I 3 s dasNov3.JH568189 837254 24 - 1116856 GCTAGTGCTGAATTAGTCTTTAAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9468245 108 - 31815103 I e mm10.chr5 124809677 0 + 151834684 C e proCoq1.NW_012154285v1 6715180 3690 - 9870158 I e manLeu1.NW_012103587v1 563663 12909 + 6255621 I e cerAty1.NW_012001186v1 12262462 580 + 20526591 I a score=82807.000000 s hg38.chr12_KI270834v1_alt 68716 6 + 119498 GTTTCA s panTro5.chr12 127354802 6 + 137163284 GTTTCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706023 6 + 135337776 GTTTCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8218967 6 - 8369578 GTTTCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866783 6 + 106955855 GTTTCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992127 6 + 133663169 GTTTCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128239521 6 + 137757926 GTTTCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10638858 6 - 16319837 GTTTCA i macNem1.NW_012010578v1 C 0 C 0 s chlSab2.chr11 119234347 6 + 128539186 GTTTCA i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4611786 6 - 8658521 GTTTCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114811478 6 + 124281992 GTTTCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 455952 6 - 9212255 GTTTCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870630 6 + 4466143 GTTTCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577291 6 + 5364348 GTTTCA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9468353 6 - 31815103 GTTTCC i micMur3.chr21 I 108 C 0 s otoGar3.GL873618 4303674 6 + 7922563 GTTTCA i otoGar3.GL873618 I 4 C 0 s canFam3.chr26 33157689 6 - 38964690 GTTTCA i canFam3.chr26 I 3 C 0 s dasNov3.JH568189 837278 6 - 1116856 GTTTCA i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124809677 0 + 151834684 C e proCoq1.NW_012154285v1 6715180 3690 - 9870158 I e manLeu1.NW_012103587v1 563663 12909 + 6255621 I e cerAty1.NW_012001186v1 12262462 580 + 20526591 I a score=200923.000000 s hg38.chr12_KI270834v1_alt 68722 15 + 119498 AACACCTAAGGCCTT s panTro5.chr12 127354808 15 + 137163284 GACACCTAAGGCCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706029 15 + 135337776 GACACCTAAGGCCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8218973 15 - 8369578 AACACCTAAGGCCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866789 15 + 106955855 AACACTTAAGGCCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992133 15 + 133663169 AACACCTAAGGCCTT i rheMac8.chr11 C 0 I 307 s macFas5.chr11 128239527 15 + 137757926 AACACCTAAGGCCTT i macFas5.chr11 C 0 I 307 s macNem1.NW_012010578v1 10638864 15 - 16319837 AACACCTAAGGCCTT i macNem1.NW_012010578v1 C 0 C 0 s chlSab2.chr11 119234353 15 + 128539186 AACACCAAAGGCCTT i chlSab2.chr11 C 0 I 303 s colAng1.NW_012116043v1 4611792 15 - 8658521 AACACCTAAGGCCTT i colAng1.NW_012116043v1 C 0 I 284 s calJac3.chr9 114811484 15 + 124281992 GACACCTGAGGCCTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 455958 15 - 9212255 GACACCTGAAGCCTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870636 15 + 4466143 GACACCTGAGGCCTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577297 15 + 5364348 GACACCTGAGGCCTT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9468359 15 - 31815103 AACACCTAAGGCCTT i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6718870 15 - 9870158 AACACCTAAGGCCTT i proCoq1.NW_012154285v1 I 3690 C 0 s otoGar3.GL873618 4303680 15 + 7922563 AACACCTAAGACTTT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33157695 15 - 38964690 AACACTTAAGTCCTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 837284 15 - 1116856 GATATCTAAGGCTTT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124809677 0 + 151834684 C e manLeu1.NW_012103587v1 563663 12909 + 6255621 I e cerAty1.NW_012001186v1 12262462 580 + 20526591 I a score=146706.000000 s hg38.chr12_KI270834v1_alt 68737 10 + 119498 GGATATTAAT s panTro5.chr12 127354823 10 + 137163284 GGATATTAAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706044 10 + 135337776 GGATATTAAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8218988 10 - 8369578 GGATATTAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866804 10 + 106955855 GGATATTAAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992455 10 + 133663169 GGATATTAAT i rheMac8.chr11 I 307 C 0 s macFas5.chr11 128239849 10 + 137757926 GGATATTAAT i macFas5.chr11 I 307 C 0 s macNem1.NW_012010578v1 10638879 10 - 16319837 GGATATTAAt i macNem1.NW_012010578v1 C 0 I 288 s chlSab2.chr11 119234671 10 + 128539186 GGATATTAAT i chlSab2.chr11 I 303 C 0 s manLeu1.NW_012103587v1 576572 10 + 6255621 GGATATTAAT i manLeu1.NW_012103587v1 I 12909 C 0 s colAng1.NW_012116043v1 4612091 10 - 8658521 GGATATTAAT i colAng1.NW_012116043v1 I 284 C 0 s calJac3.chr9 114811499 10 + 124281992 AGATATTAAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 455973 10 - 9212255 GGATATTAAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870651 10 + 4466143 GGATATTAAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577312 10 + 5364348 GGATATTAAT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9468374 10 - 31815103 GTATATTTAT i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6718885 10 - 9870158 GGATATTTAT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4303695 10 + 7922563 GGATATTTAT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33157710 10 - 38964690 GATTATTAAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 837299 10 - 1116856 GACTATTAAT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124809677 0 + 151834684 C e cerAty1.NW_012001186v1 12262462 580 + 20526591 I a score=378981.000000 s hg38.chr12_KI270834v1_alt 68747 27 + 119498 TTTAATGTTTG-A-ATAAGAAAGGAAGTC---- s panTro5.chr12 127354833 27 + 137163284 TTTAATGTTTG-A-ATAAGAAAGGAAGTC---- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706054 27 + 135337776 TTTAATGTTTG-A-ATAAGAAAGGAAGTC---- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8218998 27 - 8369578 TTTAATGTTTG-A-ATAAGAAAGGAAGTC---- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866814 27 + 106955855 TTTAATGTTTG-A-ATAAGAAAGGAAGTC---- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992465 27 + 133663169 TTTAATCTTTG-A-AGAAGAAAGGAAGTC---- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128239859 27 + 137757926 TTTAATCTTTG-A-AGAAGAAAGGAAGTC---- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639177 27 - 16319837 TTTAATCTTTG-A-AGAAGAAAGGAAGTC---- i macNem1.NW_012010578v1 I 288 C 0 s chlSab2.chr11 119234681 27 + 128539186 TTTAATCTTTG-A-AGAAGAAAGGAAGTC---- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 576582 27 + 6255621 TTTAATCTTTG-A-AGAAGAAAGGAAGTC---- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612101 27 - 8658521 TTTAATCTTTG-A-AGAAGAAAGGAAGTC---- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114811509 27 + 124281992 TTTAATCTTTG-A-ATAAGAAAGGAAGTC---- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 455983 27 - 9212255 TTTAATCTTTG-A-ATAAGAAAGGAAGTC---- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870661 27 + 4466143 TTTAATCTTTG-A-ATAAGAAAGGAAGTC---- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577322 27 + 5364348 TTTAATCTTTG-A-ATAAGAAAGGAAGTC---- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9468384 27 - 31815103 TTAAATCTTTG-A-ATAAGAAAGCAAGTC---- i micMur3.chr21 C 0 I 594 s proCoq1.NW_012154285v1 6718895 27 - 9870158 TTAAATCTTTG-A-ATAAGAAAGCAAGTC---- i proCoq1.NW_012154285v1 C 0 I 3 s otoGar3.GL873618 4303705 27 + 7922563 TTAAATCTTTG-A-ATAAAAAAGCAAATC---- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33157720 28 - 38964690 TTTAATCTTTGAA-ATAAGAAAGCAAGTC---- i canFam3.chr26 C 0 I 4 s dasNov3.JH568189 837309 32 - 1116856 TTTAATCTCTG-ATGTAAGAAAGCAAATCAGTT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124809677 0 + 151834684 C e cerAty1.NW_012001186v1 12262462 580 + 20526591 I a score=36578.000000 s hg38.chr12_KI270834v1_alt 68774 4 + 119498 TGTC s panTro5.chr12 127354860 4 + 137163284 TGTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706081 4 + 135337776 TGTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219025 4 - 8369578 TGTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866841 4 + 106955855 TGTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992492 4 + 133663169 TGTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128239886 4 + 137757926 TGTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639204 4 - 16319837 CTGT i macNem1.NW_012010578v1 C 0 C 0 s chlSab2.chr11 119234708 4 + 128539186 TGTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 576609 4 + 6255621 TGTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612128 4 - 8658521 TGTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114811536 4 + 124281992 TGTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 456010 4 - 9212255 TGTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870688 4 + 4466143 TGTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577349 4 + 5364348 TGTC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6718925 4 - 9870158 TGAT i proCoq1.NW_012154285v1 I 3 I 2 s otoGar3.GL873618 4303732 4 + 7922563 Cggc i otoGar3.GL873618 C 0 I 111 s canFam3.chr26 33157752 4 - 38964690 TATC i canFam3.chr26 I 4 I 1 s dasNov3.JH568189 837341 4 - 1116856 TATT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124809677 0 + 151834684 C e cerAty1.NW_012001186v1 12262462 580 + 20526591 I a score=795045.000000 s hg38.chr12_KI270834v1_alt 68778 62 + 119498 TTCAGGGAACAT-CTTTTTCTTTTGACCTAACTTGAGCAGATTTATGATGAATGACACTGGGT s panTro5.chr12 127354864 62 + 137163284 TTCAGGGAACAT-CTTTTTCTTTCAACCTAACTTGAGCAGATTTATGATGAATGACACTGGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706085 62 + 135337776 TTCAGGGAACAT-CTTTTTCTTTCAACCTAACTTGAGCAGATTTATGATGAATGACACTGGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219029 61 - 8369578 TTCAGGGAACAT-CTTTTTCTTTTGACCTAACTTGAGCAGATTTATGATGAATGAC-CTGGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866845 62 + 106955855 TTCAGGGAACAT-CTTTTTCCTTGGACCTAACTTGAGCAGGTTTATGATAAATGACACTGGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992496 62 + 133663169 TTCAGGGAACAT-CTTTTTCTTTGGACCTGACTTGAGCAGATTTATGAGGAATGACACTGGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128239890 62 + 137757926 TTCAGGGAACAT-CTTTTTCTTTGGACCTGACTTGAGCAGATTTATGAGGAATGACACTGGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639208 60 - 16319837 CTCAGGGAACAT-CTTTTTCTT--GACCTGACTTGAGCAGATTTATGAGGATTGACACTGGGT i macNem1.NW_012010578v1 C 0 C 0 s chlSab2.chr11 119234712 62 + 128539186 TTCAGGGAACAT-CTTTTTCTTTGGACCTAACTTGAGCAGATTTATGAGGAATGACACTGGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 576613 62 + 6255621 TTCAGGGAACAT-CTTTTTCTTTGGACCTGACTTGAGCAGATTTATGAGGAATGACACTGGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612132 62 - 8658521 TTCAGGGAACAT-CTTTTTCTTTGGACCTAACTTGAGCAGATTTATGAGGAATGACACTGGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114811540 62 + 124281992 TTTAGGGAACAT-ATTTTTTTTTGGACCTAACTTGAGCAGATTTATGATGAATGACACTGGGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 456014 62 - 9212255 TTTAGGGAACAT-CTTTTTCTTTGGACCTAACTTGAGCAGATTTATGATGAATGACACTGGTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870692 62 + 4466143 TTTAGGGAACAT-CTTTTTCTTTGGACCTAACTTGAGCAGATTTATGATGAATGACACTGGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577353 60 + 5364348 TTTAGGGAACAT-GTTTTTCTTTGGACCTAAC--GAGCAGATTTATGATGAATGACACTGCGT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6718931 62 - 9870158 TCTAGAGAAAAT-CTTTTTCTTTGGACCTAGCTTGAACAGATTTATGCCAAATGACACTGGGT i proCoq1.NW_012154285v1 I 2 I 86 s otoGar3.GL873618 4303847 62 + 7922563 CCTAGAGAAAAT-CTTTCTCTTTGGACCTACCTTGAACAGATTTATACCAAATGATACTGGGT i otoGar3.GL873618 I 111 C 0 s mm10.chr5 124809677 51 + 151834684 -----------T-CTTTTTGTCAAGATCTAACTCGAAAAGGTTTATGACCAATGCCACTGGGT i mm10.chr5 C 0 C 0 s canFam3.chr26 33157757 62 - 38964690 TTAGGGAAAAAG-CTTTTTATCTGCAACTAACTTGAGCAGATTGATGGCAAATGACACCGGGT i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 837345 59 - 1116856 TTCAGGGAAAACATTTTTTCTCTGGACCT----TGAGTGGATTTCTGACAGGTGACACTGGGT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e cerAty1.NW_012001186v1 12262462 580 + 20526591 I a score=387144.000000 s hg38.chr12_KI270834v1_alt 68840 44 + 119498 AA-----CCTTGAAAATAGTTTCAACCTTCTAAATCTGTAC----TCAAT--------AAT s panTro5.chr12 127354926 44 + 137163284 AA-----CCTTGAAAATAGTTTCAACCTTCTAAATCTGTAC----TCAAT--------AAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706147 44 + 135337776 AA-----CCTTGAAAATAGTTTCAACCTTCTAAATCTGTAC----TCAAT--------AAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219090 44 - 8369578 AA-----CCTTGAAAATAGTTTCAACCTTCCAAATCTGTAC----TCAAT--------AAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866907 44 + 106955855 AA-----CCTTGAAAATAGCTTCAACCTTCTAAATCTGTAC----GCAAT--------AAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992558 52 + 133663169 AA-----CCTTGAAAATAGTTTCAACCTTATAAATCTGTAC----TCaataataaataaat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128239952 48 + 137757926 AA-----CCTTGAAAATAGTTTCAACCTTATAAATCTGTAC----TCaat----aataaat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639268 44 - 16319837 AAC----CCTTGAAAATAGTTTCAACCTTATAAATCTGTAC----TCA---------AAAT i macNem1.NW_012010578v1 C 0 C 0 s chlSab2.chr11 119234774 48 + 128539186 AA-----CCTTGAAAATAGTTTCAACACTATAAATCTGTAC----TCaat----aataaat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 576675 48 + 6255621 AA-----CCTTGAAAATAGTTTCAACCTTATAAATCTGTAC----TCaat----aataaat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612194 48 - 8658521 AA-----CCTTGAAAATAGTTTCAACCTTACAAATCTGTAC----TCGAT----AATAAAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114811602 40 + 124281992 AA-----CCTTGAAAATAGTTTCAAC-TTATAAATCTGTAC--------T-------CAAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 456076 36 - 9212255 AA-----CCTTGAAAATAGTTTCAAC-TTATAAATCTGTAC-------------------T i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870754 44 + 4466143 AA-----CCTTGAAAATAGTTTCAAC-TTATAAATCTGTAC----TTAAT-------CAAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577413 48 + 5364348 AA-----CCTTGAAAATAGTTTCAAC-TTACAAATCTGTACtcactcact-------caat i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4303909 44 + 7922563 GA-----CCTGGTAAATCATTTCAACCTTAAAAATATATGT----TCAAT--------AAC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124809728 46 + 151834684 AG-----CTTTGTAAATAGTTTCAACCTTACCAATATGCAC----CCAAC------AAACT i mm10.chr5 C 0 C 0 s canFam3.chr26 33157819 45 - 38964690 GG-----CCTTGTAAATAGTTTCTACCTTATAAATCTGTAT----TTAGT-------AAAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 837404 48 - 1116856 --GATGTCGTAAATAATAGTTTCAATCTCACAAATATTTAG----TCAAT-------AAAT i dasNov3.JH568189 C 0 I 501 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6718993 86 - 9870158 I e cerAty1.NW_012001186v1 12262462 580 + 20526591 I a score=198699.000000 s hg38.chr12_KI270834v1_alt 68884 23 + 119498 AAATAAATAAATGTTCCTATATG s panTro5.chr12 127354970 23 + 137163284 AAATAAATAAATGTTCCTATATA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706191 23 + 135337776 AAATAAATAAATGTTCCTATATA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219134 23 - 8369578 AAATAAATAAATGTTCCTATATA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866951 23 + 106955855 AAATAAATAAATGTTCCTATATA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992610 23 + 133663169 aaataaataaataTTCCTATATA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128240000 23 + 137757926 aaataaataaataTTCCTATATA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639312 23 - 16319837 AAATAAATAAATATTCCTATATA i macNem1.NW_012010578v1 C 0 C 0 s chlSab2.chr11 119234822 23 + 128539186 aaataaataaataTTCCTATATG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 576723 23 + 6255621 aaataaataaataTTCCTATATA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612242 22 - 8658521 AAATAAATAAATATTCCTATAT- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114811642 23 + 124281992 CAATCAATCAATGTTCCTATATA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 456112 23 - 9212255 CAATCAATCAATGTTCCTATATA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870798 23 + 4466143 CAATCAATCAATGTTCCTATATA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577461 23 + 5364348 caatcaatgaatGTTCCTATATG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4303953 17 + 7922563 TAACTA------GTCCTTATATA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124809774 22 + 151834684 CAATAAACAAACAACCCT-TCTA i mm10.chr5 C 0 I 3 s canFam3.chr26 33157864 20 - 38964690 AAATAATT---TGTCCCTTTACA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 837953 22 - 1116856 aaataaaaata-GTCCCTCTATG i dasNov3.JH568189 I 501 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6718993 86 - 9870158 I e cerAty1.NW_012001186v1 12262462 580 + 20526591 I a score=543684.000000 s hg38.chr12_KI270834v1_alt 68907 46 + 119498 TAAGAAGAAATCATAACTTTAAT-CATAATGCAGTTTTGGGGGAAAA s panTro5.chr12 127354993 46 + 137163284 TAAGAAGAAATCATAACTTTAAT-CATAATGCAGTTTTGGGGGAAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706214 46 + 135337776 TAAGAAGAAATCATAACTTTAAT-CATAATGCAGTTTTGGGGGAAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219157 46 - 8369578 TAAGAAGAAATCATAACTTTAAT-CATAATGCAGTTTTGGGGGAAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97866974 46 + 106955855 TAAGAATAAATCATGACTTTAAT-CATAATGCAGTTTTGGGGGAAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992633 46 + 133663169 TAAGAAGAAATCATAACTTTAAT-CATAATGCAGTTTTAGGGGAAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128240023 46 + 137757926 TAAGAAGAAATCATAACTTTAAT-CATAATGCAGTTTTAGGGGAAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639335 43 - 16319837 TAAGGA-AAATCATAACTTTAAT-CATAATGCAGTTT--AGGGGAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263042 46 + 20526591 TAAGAAGAAATCATAACTTTAAT-CATAATGCAGTTTTAGGGGAAAA i cerAty1.NW_012001186v1 I 580 C 0 s chlSab2.chr11 119234845 46 + 128539186 TAAGAAGAAATCATAACTTTAAT-CATAATGCAGTTTTAGGGGAAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 576746 46 + 6255621 TAAGAAGAAATCATAACTTTAAT-CATAATGCAGTTTTAGGGGAAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612264 45 - 8658521 -AAGAAGACATCATAACTTTAAT-CGTAATGCAGTTTTAGGGGAAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114811665 46 + 124281992 TAAGAAGAAATCATAAGTTTAAT-CATAATTCAGGTTTTTGGGGAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 456135 46 - 9212255 TAAGAAGAAATCATAACTTTAAT-CATAATGCAGTTTTTTGGGGAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870821 46 + 4466143 TAAGAAGAGATCATAACTTTAAT-CATAATGCAGTTTTTTGGGGAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577484 45 + 5364348 TAAGAAGAAATCATAACTTTAAT-CATAATGCAG-TTTTTGGGGAAA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4303970 46 + 7922563 CAAGCAGAATTCATAACTTTAAT-CATAATGCAGCATTTGGGGGAAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124809799 46 + 151834684 AAAGCCAAAGCTGTAATTTCAGT-TATAATGCTGTTCTCCTGGGAAG i mm10.chr5 I 3 C 0 s canFam3.chr26 33157884 35 - 38964690 CAGGGAGCACTCATAATTTTAACACACAA------------GGTAAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 837975 46 - 1116856 CAGACAGAAGTCATCACTTCCTT-TATAATGCAGTTTTTGGGGGAGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6718993 86 - 9870158 I a score=426953.000000 s hg38.chr12_KI270834v1_alt 68953 28 + 119498 GGGGCCAAGAGAATGACTCTTTTCTGAT s panTro5.chr12 127355039 28 + 137163284 GGGGCTAAGAGAATGACTCTTTTCTGAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706260 28 + 135337776 GGGGCTAAGAGAATGACTCTTTTCTGAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219203 28 - 8369578 GGGGCTAAGAGAATTACTCTTTTCTGAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97867020 28 + 106955855 GGGGCCAAGAGAATGACTCTTTTCTGAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992679 28 + 133663169 GGGGCCAAGAGAATGACTCTTTTCTGAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128240069 28 + 137757926 GGGGCCAAGAGAATGACTCTTTTCTGAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639378 28 - 16319837 AGGGCCAAGAGAATGACTCTTTCTGAAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263088 28 + 20526591 GGGGCCAAGAGAATGACTCTTTTCTGAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119234891 28 + 128539186 GGGGCCAAGAGAATGACTCTCTTCTGAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 576792 28 + 6255621 GGGGCCAAGAGAATGACTCTTTTCTGAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612309 28 - 8658521 GGGGCCAAGAGAATGACTCTTTTCTGAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114811711 28 + 124281992 GGAGCCAAGAGAATGACTCTTTTCTGAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 456181 28 - 9212255 GGGGCCAAGAGAATGACTCTTTTTTGAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870867 28 + 4466143 GGGGCCAAGAGAATGACTCTTTTCTGAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577529 28 + 5364348 GGGGCCAAGAGAATGACTCTTTTCTGAT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6719079 28 - 9870158 GGGGCTAAGAGAATGACTCTTTTCTGAT i proCoq1.NW_012154285v1 I 86 I 275 s otoGar3.GL873618 4304016 28 + 7922563 GAGGCTAAGAGAATGACTCTGTTCTGAT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124809845 26 + 151834684 GAAACCAAGAGGACA--TTTGTTGTGAC i mm10.chr5 C 0 C 0 s canFam3.chr26 33157919 27 - 38964690 GGGGCTAA-AGAATGGCTCTGTGCTGAC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838021 28 - 1116856 ATGATTGAGAGCATGACTGTTTTCTGAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I a score=74365.000000 s hg38.chr12_KI270834v1_alt 68981 6 + 119498 GATATA s panTro5.chr12 127355067 6 + 137163284 GATATA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706288 6 + 135337776 GATATA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219231 6 - 8369578 GATATA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97867048 6 + 106955855 GATATA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992707 6 + 133663169 GACATA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128240097 6 + 137757926 GACATA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639406 6 - 16319837 GACATA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263116 6 + 20526591 GATATA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119234919 6 + 128539186 GATATA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 576820 6 + 6255621 GATATA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612337 6 - 8658521 GATATA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114811739 6 + 124281992 GATATA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 456209 6 - 9212255 GATATA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870895 6 + 4466143 GATATA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577557 6 + 5364348 GATATA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4304044 6 + 7922563 TACATA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124809871 6 + 151834684 ATTATG i mm10.chr5 C 0 C 0 s canFam3.chr26 33157946 6 - 38964690 AGTCTA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838049 6 - 1116856 GATACA i dasNov3.JH568189 C 0 I 52 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719107 275 - 9870158 I a score=2357872.000000 s hg38.chr12_KI270834v1_alt 68987 243 + 119498 TCTC-------------------------aggtccagatggtaaatatttacagctttt------------------tcgcaactactcaattctgccattttat-catgaaagcagtcatagacaatacgtaaatgaatcgctatggctgtgatccaataacactttatttacaaaa-acagggggcgggctgg----atttgtcc-tttggc-ccg-tagttggccag-ccccAAT----ATAGATGTCC--CCTTGTTCTCAGAGGCGTATTTGCCGTTTCCATGTGTGAAGTGCTTGT-- s panTro5.chr12 127355073 243 + 137163284 TCTC-------------------------aggtccagatggtaaatatttacagctttt------------------tcgcaactactcaattctgccattttat-catgaaagcagtcatagacaatacgtaaatgaatcgctatggctgtgattcaataacactttatttacaaaa-acatggggcgggctgg----atttgtcc-tttggc-ccg-tagttggccag-ccccAAT----ATAGATGTCC--CCTCGTTCTCAGAGGCATATTTGCCGTTTCCATGTGTGAAGTGCTTGT-- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706294 243 + 135337776 TCTC-------------------------aggtccagatggtaaatatttacagctttt------------------tcgcaactactcaattctgccattttat-catgaaagcagtcatagacaatacgtaaatgaatcgctatggctgtgattcaataacactttatttacaaaa-acatggggcgggctgg----atttgtcc-tttggc-ccg-tagttggccag-ccccAAT----ATAGATGTCC--CCTCGTTCTCAGAGGCATATTTGCCGTTTCCATGTGTGAAGTGCTTGT-- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219237 242 - 8369578 TCTC-------------------------aggtccagatggtaaatatttacagctttt------------------tcgcagctactcaattctgccattttat-catgaaagcagtcatagacaatacgtaaatgaatcgctatggctgtgattcaataacactttatttacaaaa-aca-ggggcgggctgg----atttgtcc-tttggc-ccg-tagttggccag-ccccAAT----ATAGATGTCC--CCTTGTTCTCAGAGGCGTATTTGCCGTTTCCATGTGTGAAGTGCTTGT-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97867054 243 + 106955855 TCTC-------------------------aggtccagatggtaaatatttatagctttt------------------tcacaactactcaattctgccattttat-catgaaagcagtcatagacaatacgtaaatgaatcgctatggctgtgtttcaataacactttatttacaaaa-acagggggcgggctgg----atttgtcc-tttggc-ctg-tagttggccag-ccccAAT----ATAGATGTCC--CCTTGTTCTCAGAGGCGTATTTGCCGTTTCCATGTGTGAAGTGCTTGT-- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992713 230 + 133663169 TCTC-------------------------aggtccagatggtaaatatttacagctttt------------------tcgcagctacgcaattctgccatgttat-catgaaagcagtcatagacaaaatgtaaatgaatcgctatggctata-----------ttttatttacaaaa-ac--ggggtgggctgg----gtttgtcc-tttggc-ctg-tagttggccag-ccccGAT----ACAGATGTAC--GCTTGTTCTCAGAGGTGTATTTGCCATTTTCACGTGTGAAGTGCTTGT-- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128240103 230 + 137757926 TCTC-------------------------aggtccagatggtaaatatttacagctttt------------------tcgcagctacgcaattctgccatgttat-catgaaagcagtcatagacaaaatgtaaatgaatcgctatggctata-----------ttttatttacaaaa-ac--ggggtgggctgg----gtttgtcc-tttggc-ctg-tagttggccag-ccccGAT----ACAGATGTAC--GCTTGTTCTCAGAGGTGTATTTGCCATTTTCACGTGTGAAGTGCTTGT-- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639412 227 - 16319837 TCTC---------------------------GTAcagatggtaaatatttacagctttt------------------tcgcagctacgcaattctgccatgttatacatgaaagcagtcatagacaaaatgtaaatgaatcgctatggctata------------tttatttacaaaa-ac--gggg-gggctgg----gtttgtccttttggc-ctgttagttggccagcccccgAT----ACAGATGTAC--GCTTG-TCTCAGAGGTGTATTTGCCATTTTCATGTG-GAAGTGC-TGT-- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263122 230 + 20526591 TCTC-------------------------aggtccagatagtaaatatttacagctttt------------------tcgcagctacgcaattctgccatgttat-catgaaagcagtcatagacaaaacgtaaatgaatcgctatggctatg-----------tttcatttacaaaa-ac--ggggtgggctgg----gtttgtcc-tttggc-ctg-tagttggccag-ccccGAT----ACAGATGTAC--CCTTGTTCTCAGAGGTGTATTTGCCATTTTCATGTGTGAAGTGCTTGT-- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119234925 230 + 128539186 TCTC-------------------------aggtccagatggtaaatatttacagctttt------------------tcgcagctacgcaattctgccatgttat-catgaaagcagtcatagacaatacgtaaatgaatcactatggctatg-----------tttcatttacaaaa-ac--ggggtgggctgg----atttgttc-tttggc-ctg-tagttggccag-ccccGAT----ACAGATGTAC--CCTTGTTCTCAGAGTTGTATTTGCCATTTTCATGTGTGAAGTGCTTGT-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 576826 230 + 6255621 TCTC-------------------------aggtccagatggtaaatatttacagctttt------------------tcgcagctacgcaattctgccatgttat-catgaaagcagtcatagacaaaatgtaaatgaatcactatggctata-----------ttttatttacaaaa-at--ggggtgggctga----gtttgtcc-tttggc-ctg-tagttggccag-ccccGAT----ACAGATATAC--GCTTCTTCTCAGAGGTGTATTTGCCATTTTCATGTGTGAAGTGCTTGT-- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612343 229 - 8658521 TCTC-------------------------aggtccagatggtaaatatttacagttttt------------------tcgcagctactcgattctgccattttat-catgaaagcagtcacagacaatacgt-aacgaatcgctatggctatg-----------tttcatgtacaaaa-ac--ggggtgggctgg----atgtgtcg-tttggc-ctg-tggttggccag-cccTGAC----ACAGATGTAC--CCTTGTTCTCAGAGGCGTGTTTACCATTTTCATGTGTGAAGTGCTTGT-- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114811745 243 + 124281992 TCTC-------------------------aggtccagatggtaaatatttacagccttt------------------ctgcaactactcagtactgccatttgat-catgaaagcagtcatagacaacatgtaagtgaatgagtatggctgtgtttcaataaaactttatttacaaaa-gcagggggcgggctgg----atttgtcc-tttggc-ctg-tagttggccag-ccccGAT----ATAGATGTAC--TGTTGTTCTCAGAGGTGTATTTGCCGTTTCCATGTGTGAAATGCTTGC-- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 456215 239 - 9212255 TCTC-------------------------aggtccagatggtaaatatttacagccttt------------------ttgcaactactcaatactgccattttat-catgaaagcagtcatagacaacatgtaagtgaatgactatggctgtgtttcaataaaactttatttacaaaa-gcagggggcaggctgg----atttgtcc-tttggc-ctg-tagttggccag-cccTGAT----ATAGATGTAG--CGTTGTTCTCAG----GTATTTGCCATTTCCATGTGTGAAATGCTTGT-- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2870901 243 + 4466143 TCTC-------------------------aggtccatatggtaaatatttacagccttt------------------ttgcaactactcaatactgccattttat-catgaaagcagtcatagacaacatgtaagtgaatgactatggctgtgtttcaataaaactttatttacaaaa-gcagggggcaggctgg----atttgtcc-tttggc-ctg-tagttggccag-cccTGAT----ATAGATGTAG--CGTTGTTCTTAGAGGTGTATTTGCTGTTTCCATGCGTGAAATGCTTGT-- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577563 243 + 5364348 TCTC-------------------------aggtccagatggtaaatatttacagccttt------------------ttgcaactactcagtactgccattttat-catgacagcagtcatagacaacatgtaagtgaatgactatggctgtgtttcaataaaactttatttacaaaa-gcaggaggcgggctgg----atttgtcc-tttggc-ctg-tagttggccag-ccccAAT----ATAGATGTAC--CATTGTTCTCAGAGGTGTATTTGCCGTTTCCATGTGTGAAATGCTTGT-- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4304050 256 + 7922563 ACTcagagggcagcaagct--ttctgtaaaggttcagatggtaaa----tacagcgatg------------------tcagaactactcagttttgcatttgtat-catgaaagagttcatagatattatgtacattgatggctgtggcagtgttccaataaaactttatttacaaag-aaaggtggtgga--gg----atttgtcc-tttggt-tca-cagtttgccaa-cccTGAG----AGAGATGGGC--CCTAGTTTTCACAGCTG--TTTGCCATTTCCA-GTGTTAGCAGTTGG--- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124809877 248 + 151834684 ACTcagagtctggctaactgcttctgtgaaggtccacatggc-aatatttgc--ttctg------------------tcacagctgcaaaattctgacaatgtgc-tttgagagctctccaggaccagatgtagatgaatt----tggctgtgtttcaataaaactttatttagaaaacacaagtggtgggccggccatgcttgccc-tgtggagctg-tgact-gccag-cccTGAT----GTGGCTGTGCATGCTAGCTCCCA-AGGTGTGCAAGTCATGT--------------------- i mm10.chr5 C 0 I 1 s canFam3.chr26 33157952 283 - 38964690 ACTTaggaatcagcaaactttttctgtaaaggagcagatgataaatattttcagctttgtgggtcatacaggctccattgcaactactc----ctgccactgaac-catgacggcagccacaaataatgtgtacgggagcaggcatggctgtgttctcatgaaactgtgtttacaaaa-acaggcagtgggacag----atttgtcc-t------gca-tggtctgccaa-ccccAGTATAGATAGATGCAC--CTGAGCTTCCATGGGCACGCGAGCCATCCCTGCATGTTAACAGCACTTAG i canFam3.chr26 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719107 275 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I a score=865710.000000 s hg38.chr12_KI270834v1_alt 69230 61 + 119498 GTTTGCTTTCAGTATTCAGTGATTCAGCATCATAAATAATGCTGCCTAGAATTTGCTTAGA s panTro5.chr12 127355316 61 + 137163284 GTTTGCTTTCAGTATTCAGTGATTCAGCATCATAAATAATGCTGCCTAGAATTTGCTTAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706537 61 + 135337776 GTTTGCTTTCAGTATTCAGTGATTCAGCATCATAAATAATGCTGCCTAGAATTTGCTTAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219479 61 - 8369578 GTTTGCTTTCAGTATTCAGTGATTCAGCATCATAAATAATGCTGCCTAGAATTTGCTTAGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97867297 61 + 106955855 ATTTGCTTTCAGTATTCAGTGATTCAGCATCATAAATAATGCTGCCTAGAATTTGCTTAGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123992943 61 + 133663169 GTTTGCTTTCAGTATTCAGTGTTCCAGCATCATAAATAATGCTGCCTAGAATTTGCTTAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128240333 61 + 137757926 GTTTGCTTTCAGTATTCAGTGTTCCAGCATCATAAATAATGCTGCCTAGAATTTGCTTAGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639639 60 - 16319837 GTTTGCTTTCATTATTCAGTGTTCCAGCATCATAAATAATGCTGCCTAGAATTT-CTTAGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263352 61 + 20526591 GTTTGCTTTCAGTATTCAGTGTTCCAGCATCATAAATAATGCTGCCTAGAATTTGCTTAGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235155 61 + 128539186 GTTTGCTTTCAGTATTCAGTGTTCCAGCATCACAAATAATGCTGCGTAGAATTTGCTTAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 577056 61 + 6255621 GTTTGCTTTCAGTATTCAGTGTTCCAGCATCATAAATAATGCTGCCTAGAATTTGCTTAGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612572 61 - 8658521 GTTTGCTTTCAGTATTCAGTGTTCCAGCATCATAAATAATGCTGCCTAGAATTTGCTTAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114811988 61 + 124281992 GTTTGGTTTCAGTATTCAGTGTTTCAGCATCATAAATAATGCTGCCTTGAATTTGCTTAGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 456454 61 - 9212255 GTTTGGTTTCAGTATTCAGTGTTTCAGCATCATAAATAATGCTGCCTCGAATTTGCTTAGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2871144 61 + 4466143 GTTTGGTTTCAGTATTCAGTGTTTCAGCGTCATAAATAATGCTGCCTCGAATTTGCTTGGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577806 61 + 5364348 GTTTCGTTTCAGTATTCAGTGTTTCAGCATCATAAATAATGCTGCCTCGAATTTGCTTAGA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6719382 61 - 9870158 GTTTGCTTTCAGTATTCTGTGTTTCAGTGTCATAAATAACACTGCTTGGAATTTGCTTAGA i proCoq1.NW_012154285v1 I 275 I 1226 s otoGar3.GL873618 4304306 61 + 7922563 ATTTGCTTTCAGTATTCCATGTTTCAGTGCCATAAATAATGCTGCTTGGAATTTGCTTAGA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124810126 61 + 151834684 GCTACCTTCCAGCTTGTGGTGTTTCAGTTCTATGCACAAAGCTGCCCACAATTCACTAACA i mm10.chr5 I 1 C 0 s canFam3.chr26 33158235 61 - 38964690 GTTTACTTTCAGCATTCAGTGGCTCTGTGTCATAAATAACACCACATGGAATTCGCTTAGA i canFam3.chr26 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e dasNov3.JH568189 838055 52 - 1116856 I a score=94248.000000 s hg38.chr12_KI270834v1_alt 69291 14 + 119498 A----CTTTTTTGTCCTT- s panTro5.chr12 127355377 14 + 137163284 A----CTTTTTTGTCCTT- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706598 14 + 135337776 A----CTTTTTTGTCCTT- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219540 12 - 8369578 A----TTTTTT--TCCTT- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97867358 14 + 106955855 A----CTTTTTTTTCCTT- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123993004 13 + 133663169 A----CTCTTTT-TCCTT- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128240394 13 + 137757926 A----CTCTTTT-TCCTT- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639699 13 - 16319837 A----CTCTTTT-TCCTT- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263413 13 + 20526591 A----CTCTTTT-TCCTT- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235216 13 + 128539186 A----CTCTTTT-TCCTT- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 577117 13 + 6255621 A----CTCTTTT-TCCTT- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612633 13 - 8658521 A----CTCCTTT-TCCTT- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114812049 14 + 124281992 A---CTTTTTTT-TCCTT- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 456515 17 - 9212255 CTTTTTTTTTTT-TCCTT- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2871205 13 + 4466143 A----CTTTTTT-TCCTT- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577867 13 + 5364348 A----CTTTTTT-TCCTT- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4304367 12 + 7922563 -----GTTTTTT-CCCTT- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124810187 10 + 151834684 -------GTTCT-TTCTT- i mm10.chr5 C 0 C 0 s canFam3.chr26 33158296 14 - 38964690 A----TTTTTTT-TTTTTC i canFam3.chr26 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I a score=178227.000000 s hg38.chr12_KI270834v1_alt 69305 18 + 119498 AGAATATACTCCCTGGAg s panTro5.chr12 127355391 18 + 137163284 AGAATATACTCCCTGGAg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706612 18 + 135337776 AGAATATACTCCCTGGAg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219552 18 - 8369578 AGAATATACTCCCTGGAg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97867372 18 + 106955855 AGAATATACTCCCTGGAg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123993017 18 + 133663169 AGGATATACTCCCTGGAg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128240407 18 + 137757926 AGGATATACTCCCTGGAg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639712 18 - 16319837 AGGATATACTCCCTGGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263426 18 + 20526591 AGGATATACTCCCTGGAg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235229 18 + 128539186 AGAATATACTCCCTGGAg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 577130 18 + 6255621 AGGATATACTCCCTGGAg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612646 18 - 8658521 AGAATATACTCCCTGGAg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114812063 18 + 124281992 AGAATTTATTCACTGGAg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 456532 18 - 9212255 AGAATATAGTCACTGGAg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2871218 18 + 4466143 AGAATGTAGTTACTGGAg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577880 18 + 5364348 AGAATATATTCACTGGAg i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124810197 18 + 151834684 TAAACATATTCCCTTAAG i mm10.chr5 C 0 C 0 s canFam3.chr26 33158310 13 - 38964690 -----gggcagcctgggt i canFam3.chr26 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I e otoGar3.GL873618 4304379 0 + 7922563 C a score=662249.000000 s hg38.chr12_KI270834v1_alt 69323 74 + 119498 g-ccaggcgcagtggctca-cacctgt-aatcccagcactttgggaggctgaggcgggtggatcacttg-agcccagg s panTro5.chr12 127355409 74 + 137163284 g-ccaggcgcagtggctca-cacctgt-aatcccagcactttgggaggctgaggcaggtggatcacttg-agcccagg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706630 74 + 135337776 g-ccaggcgcagtggctca-cacctgt-aatcccagcactttgggaggctgaggcaggtggatcacttg-agcccagg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219570 74 - 8369578 g-ccaggcgcagtggctca-cacctgt-aatcccagcactttgggaggctgaggcgggtggatcacttg-agcccagg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97867390 74 + 106955855 g-ctgggcgcagtggctcg-cacctgt-aatcccagcactttgggaagccgaggcaggtggatcacttg-agcccggg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123993035 74 + 133663169 g-ccgggtgcagtggctca-cacctct-aatcccagcactttgggaggccgaggtggatggatcacttg-agcccagg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128240425 74 + 137757926 g-ccgggtgcagtgactca-cacctct-aatcccagcactttgggaggccgaggtggatggatcacttg-agcccagg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639730 78 - 16319837 GCccggttgcagtggctcaccacctctaaatcccagcactgttggaggccgaggtggatggatcacttgaagcccagg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263444 74 + 20526591 g-ccgggcgcagtggctca-cacctct-aatcccagcactttgggaggccgaggtggatggatcacttg-agcccagg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235247 74 + 128539186 g-ccgggcgcagtggctca-cacctgt-aatcccagcactttgggaggccgaggtggatggatcacttg-agcccagg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 577148 74 + 6255621 g-ctgggtgcagtggctca-cacctct-aatcccagcactttgggaggccgaggtggatggatcacttg-agcccagg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612664 74 - 8658521 g-ctgggcgcagtggctca-cacctgt-aatcccagcactttgggaggccgaggtggatggatcacttg-agcccagg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114812081 74 + 124281992 g-ccgggtgaagtggctca-caccttt-ggtcccagcactttgggagacggaggcaggtagatcatttg-agcccaag i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 456550 71 - 9212255 g-ccgggtgaagtggctca-caccttt-ggtcccagcactttgggaggcagaggcaggtag---atttg-agcccaag i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2871236 74 + 4466143 g-ctaggcgaagtggctca-caccttt-ggccccagcactttgggaggcggaggcaggtagattatttg-agcccaag i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577898 74 + 5364348 g-ccgggcgaagtggctca-taccttt-ggtcccagcactttgggaggtggaggcaggtagatcatttg-agcccaag i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33158323 33 - 38964690 -----gactcagtggttta-gtgctgc--------------------------------------cttc-ggcccagg i canFam3.chr26 C 0 I 70 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124810215 0 + 151834684 C e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I e otoGar3.GL873618 4304379 0 + 7922563 C a score=1180464.000000 s hg38.chr12_KI270834v1_alt 69397 121 + 119498 agttcgagaccagcctgggcaaaatggtgaaaccctgtatttactaaaaatacaaaaattagctgggtgtggtggtgggcacctgtaatcccagctactcaggaggctgagccatgagaat s panTro5.chr12 127355483 112 + 137163284 agttcgagaccagcctgggcaaaatggtgaaaccccatatt---------tacaaaaattagctggatgtggtggtgggcacctgtaatcccagctactcaggaggctgagccatgagaat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706704 112 + 135337776 agttcgagaccagcctgggcaaaatggtgaaaccccatatt---------tacaaaaattagctggatgtggtggtgggcacctgtaatcccagctactcaggaggctgagccatgagaat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219644 121 - 8369578 agttcgagaccagcctgggcaaaatggtgaaaccccatatttactaaaaatacaaaaattagctgggtgtggtggtgggcacctgtaatcccagctactcaggaggctgagccatgagaat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97867464 120 + 106955855 agttcgagaccagcctgggcaaaatggtgaaaccccatatttactaaaaatacaaaaattagccaggtgtgttggcaggcacctgtaatcccagctactca-gaggctgagccatgagaat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123993109 121 + 133663169 agtttgagaccagcctgggcaaaatggtgaaaccccatatttactaaaaatacaaaaattagccgggtgtggtggcgggcgcctgtaatcccagctactcaggaggctgagtcatgagaat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128240499 121 + 137757926 agtttgagaccagcctgggcaaaatggtgaaaccccatatttactaaaaatacaaaaattagccgggtgtggtggcgggcgcctgtaatcccagctactcaggaggctgagtcatgagaat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639808 121 - 16319837 agtttgagaccagcctgggcaaaatggtgaaaccccatatttactaaaaatacaaaaattagccgggtgtggtggcgggcgcctgtaatcccagctactcaggaggctgagtcatgagaat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263518 121 + 20526591 agtttgagaccagcctgggcaaaatggtgaaaccccatatttactaaaaatacaaaaattagccgggtgtggtggcgggcacctgtaatcccagctactcaggaggctgagtcatgagaat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235321 121 + 128539186 agtttgagaccagcctgagcaaaatggtgaaaccctgtatttactaaaaatacaaaaattaaccaggtgtggtggcgggcacctgtaatcccagctactcaggagactgagtcatgagaat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 577222 121 + 6255621 agtttgagaccagcctgggcaaaatggtgaaaccccatatttactaaaaatacaaaaattagccgggtgtggtggcgggcgcctgtaatcccagctactcaggaggctgagtcatgagaat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612738 121 - 8658521 agttcgagaccagcctgggcaaaatggtgaaaccccgtatttactaaaaatacaaaaattagccaggtgtggtggcaggcacctgtaatcccagctactcaggagactgagtcatgagaat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114812155 121 + 124281992 agttcaagaccagcctgggcaaaatggtgaagccccttattaactaaaaatataaaaattagccaggcgtgatggtgcccccatgggatcccagctactcaggaggctaagccataagaat i calJac3.chr9 C 0 I 392 s saiBol1.JH378194 456621 121 - 9212255 agttcaagaccagcctgggcaaaatggtgaagccccttatttactaaaaatataaaaattagccaggcgtgatggtgggtacctgtaatcccagctactcaggaggctaagccataagaat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2871310 121 + 4466143 agttcaagaccagcctgggcaaaatggtgaagccccttatttactaaaaatataaaaattagccaggcatggtggtgggtacctgtaatcccagctactcaggaggctaagccataagaat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1577972 121 + 5364348 agttcaagaccagcctgggcaaaatggtgaagcctcttatttactaaaaatataaaaattagccaggcgtgatggtgggtacctgtaatcccagctgctcaggaggctaagccataagaat i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124810215 0 + 151834684 C e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I e canFam3.chr26 33158356 70 - 38964690 I e otoGar3.GL873618 4304379 0 + 7922563 C a score=276121.000000 s hg38.chr12_KI270834v1_alt 69518 29 + 119498 tgcttgag-cccaggaggcagaggttgcag s panTro5.chr12 127355595 29 + 137163284 tgcttgag-cccaggaggcagaggttgcag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706816 29 + 135337776 tgcttgag-cccaggaggcagaggttgcag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219765 30 - 8369578 tgcttgagccccaggaggcagaggttgcag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97867584 29 + 106955855 tgcttgag-cccaggaggcagacgttgcag i nomLeu3.chr10 C 0 I 301 s rheMac8.chr11 123993230 29 + 133663169 tgcttgag-cccagaaggcagaggttgcag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128240620 29 + 137757926 tgcttgag-cccagaaggcagaggttgcag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639929 29 - 16319837 tgcttgag-cccagaaggcagaggttgcag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263639 29 + 20526591 tgcttgag-cccaggaggcagaggttgcag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235442 29 + 128539186 tgcttgag-cccaggaggcagaggttgcag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 577343 29 + 6255621 tgcttgag-cccagatggcagaggttgcag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612859 29 - 8658521 tgcttgag-cccaggaggcagaggttgcag i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 456742 29 - 9212255 tgcttgag-cccaggaggcagaggttgcag i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2871431 29 + 4466143 tgcttgag-cccaggaggcagaggttgcag i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1578093 29 + 5364348 tgcttgag-cccaggaggcagaggttgcag i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124810215 0 + 151834684 C e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I e canFam3.chr26 33158356 70 - 38964690 I e otoGar3.GL873618 4304379 0 + 7922563 C e calJac3.chr9 114812276 392 + 124281992 I a score=25662.000000 s hg38.chr12_KI270834v1_alt 69547 3 + 119498 tga s panTro5.chr12 127355624 3 + 137163284 tga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706845 3 + 135337776 tga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219795 3 - 8369578 tga i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993259 3 + 133663169 tga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128240649 3 + 137757926 tga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639958 3 - 16319837 tga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263668 3 + 20526591 tga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235471 3 + 128539186 tga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 577372 3 + 6255621 tga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612888 3 - 8658521 tga i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 456771 3 - 9212255 tga i saiBol1.JH378194 C 0 M 241 s cebCap1.NW_016107484v1 2871460 3 + 4466143 tga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1578122 3 + 5364348 tga i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124810215 0 + 151834684 C e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I e canFam3.chr26 33158356 70 - 38964690 I e otoGar3.GL873618 4304379 0 + 7922563 C e calJac3.chr9 114812276 392 + 124281992 I e nomLeu3.chr10 97867613 301 + 106955855 I a score=7800.000000 s hg38.chr12_KI270834v1_alt 69550 1 + 119498 g s panTro5.chr12 127355627 1 + 137163284 g i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706848 1 + 135337776 g i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219798 1 - 8369578 g i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993262 1 + 133663169 g i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128240652 1 + 137757926 g i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10639961 1 - 16319837 g i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263671 1 + 20526591 g i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235474 1 + 128539186 g i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 577375 1 + 6255621 g i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612891 1 - 8658521 g i colAng1.NW_012116043v1 C 0 C 0 s cebCap1.NW_016107484v1 2871463 1 + 4466143 g i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1578125 1 + 5364348 g i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124810215 0 + 151834684 C e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I e canFam3.chr26 33158356 70 - 38964690 I e otoGar3.GL873618 4304379 0 + 7922563 C e saiBol1.JH378194 456774 241 - 9212255 M e calJac3.chr9 114812276 392 + 124281992 I e nomLeu3.chr10 97867613 301 + 106955855 I a score=266922.000000 s hg38.chr12_KI270834v1_alt 69551 44 + 119498 ccgagtttgtgccactgctctccatcctgggaggcacagtgaga s panTro5.chr12 127355628 44 + 137163284 ccgagttcgtgccactgctctccatcctgggaggcacagtgaga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706849 44 + 135337776 ccgagttcgtgccactgctctccatcctgggaggcacagtgaga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219799 43 - 8369578 ccgagttcgtgccact-ctgtccatcctgggaggcacagtgaga i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993263 44 + 133663169 ccgagttcgtgccactgatctccatcctgggaaacagagtgaga i rheMac8.chr11 C 0 I 11 s macFas5.chr11 128240653 44 + 137757926 ccgagttcgtgccactgctctccatcctgggaaacagagtgaga i macFas5.chr11 C 0 I 722 s macNem1.NW_012010578v1 10639962 44 - 16319837 ccgagttcgtgccactgctctccatcctgggaaacagagtgaga i macNem1.NW_012010578v1 C 0 I 3 s cerAty1.NW_012001186v1 12263672 44 + 20526591 ccaagttcgtgccactgctctccatcctgggaaacagagtgaga i cerAty1.NW_012001186v1 C 0 I 13 s chlSab2.chr11 119235475 44 + 128539186 ccgagttcgtgccactgctctccatcctgggaaacagagtgaga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 577376 44 + 6255621 ccgagttcgtgccactgctctccatcctgggaaacagagtgaga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612892 44 - 8658521 ccaagtttgtgccactgcactccatcctgggaaacagagtagga i colAng1.NW_012116043v1 C 0 C 0 s cebCap1.NW_016107484v1 2871464 44 + 4466143 ccatgtttgtgccactgtactccagcctgggcaacagaatgaga i cebCap1.NW_016107484v1 C 0 I 29 s aotNan1.NW_018491581v1 1578126 44 + 5364348 ccgagttcgtgccactgtactccagcctgggcaacagagtgaga i aotNan1.NW_018491581v1 C 0 I 12 s canFam3.chr26 33158426 28 - 38964690 ctgtgtttctgcacccgcccccccccct---------------- i canFam3.chr26 I 70 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124810215 0 + 151834684 C e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I e otoGar3.GL873618 4304379 0 + 7922563 C e saiBol1.JH378194 456774 241 - 9212255 M e calJac3.chr9 114812276 392 + 124281992 I e nomLeu3.chr10 97867613 301 + 106955855 I a score=10500.000000 s hg38.chr12_KI270834v1_alt 69595 1 + 119498 c s panTro5.chr12 127355672 1 + 137163284 c i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706893 1 + 135337776 c i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219842 1 - 8369578 c i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993318 1 + 133663169 c i rheMac8.chr11 I 11 C 0 s macFas5.chr11 128241419 1 + 137757926 c i macFas5.chr11 I 722 C 0 s macNem1.NW_012010578v1 10640009 1 - 16319837 c i macNem1.NW_012010578v1 I 3 C 0 s cerAty1.NW_012001186v1 12263729 1 + 20526591 c i cerAty1.NW_012001186v1 I 13 C 0 s chlSab2.chr11 119235519 1 + 128539186 c i chlSab2.chr11 C 0 I 21 s manLeu1.NW_012103587v1 577420 1 + 6255621 c i manLeu1.NW_012103587v1 C 0 T 5371 s colAng1.NW_012116043v1 4612936 1 - 8658521 c i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114812668 1 + 124281992 c i calJac3.chr9 I 392 C 0 s cebCap1.NW_016107484v1 2871537 1 + 4466143 c i cebCap1.NW_016107484v1 I 29 C 0 s aotNan1.NW_018491581v1 1578182 1 + 5364348 c i aotNan1.NW_018491581v1 I 12 C 0 s canFam3.chr26 33158454 1 - 38964690 c i canFam3.chr26 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124810215 0 + 151834684 C e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I e otoGar3.GL873618 4304379 0 + 7922563 C e saiBol1.JH378194 456774 241 - 9212255 M e nomLeu3.chr10 97867613 301 + 106955855 I a score=45325.000000 s hg38.chr12_KI270834v1_alt 69596 19 + 119498 tttatctcacacaca-----------------------------------caca s panTro5.chr12 127355673 19 + 137163284 tttatctcacacaca-----------------------------------caca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706894 19 + 135337776 tttatctcacacaca-----------------------------------caca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219843 19 - 8369578 tttatctcTCTCTCT-----------------------------------CTCT i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993319 19 + 133663169 tctctctctctctct-----------------------------------ctca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128241420 19 + 137757926 tctctctctctctct-----------------------------------ctca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640010 19 - 16319837 tctctctctctctct-----------------------------------ctct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263730 19 + 20526591 tctctctctctctct-----------------------------------ctca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235541 19 + 128539186 tctctctctctctct-----------------------------------ctca i chlSab2.chr11 I 21 I 4 s colAng1.NW_012116043v1 4612937 18 - 8658521 -CTCTCTCTCTCTca-----------------------------------caca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114812669 19 + 124281992 tctctctcacacaca-----------------------------------caca i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2871538 19 + 4466143 tctctctcacacgca-----------------------------------caca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1578183 54 + 5364348 tctctctctcactcactctctctctctcctctctctctctctctctctctctct i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33158455 5 - 38964690 tctgt------------------------------------------------- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124810215 0 + 151834684 C e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I e otoGar3.GL873618 4304379 0 + 7922563 C e saiBol1.JH378194 456774 241 - 9212255 M e manLeu1.NW_012103587v1 577421 5371 + 6255621 T e nomLeu3.chr10 97867613 301 + 106955855 I a score=183483.000000 s hg38.chr12_KI270834v1_alt 69615 25 + 119498 cacacacacacacacacacacacac s panTro5.chr12 127355692 25 + 137163284 cacacacacacacacacacacacac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706913 25 + 135337776 cacacacacacacacacacacacac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219862 23 - 8369578 cacacacacacacacacacacac-- i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993338 25 + 133663169 cacacacacacacacacacacacac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128241439 25 + 137757926 cacacacacacacacacacacacac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640029 25 - 16319837 ctcacacacacacacacacacacag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263749 25 + 20526591 cacacacacacacacacacacacac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235564 25 + 128539186 cacacacacacacacacacacacac i chlSab2.chr11 I 4 C 0 s manLeu1.NW_012103587v1 572050 25 + 6255621 cacacacacacacacacacacacac i manLeu1.NW_012103587v1 T 5371 C 0 s colAng1.NW_012116043v1 4612955 25 - 8658521 cacacacacacGTGCATACGCACGC i colAng1.NW_012116043v1 C 0 I 10 s calJac3.chr9 114812688 25 + 124281992 cacacacacacacacacacatacat i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2871557 25 + 4466143 cacacacacacacacacacacacac i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1578237 25 + 5364348 cacacacacacacacacacaaacat i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33158460 23 - 38964690 --tgctcatgaataaataaaatctt i canFam3.chr26 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124810215 0 + 151834684 C e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I e otoGar3.GL873618 4304379 0 + 7922563 C e saiBol1.JH378194 456774 241 - 9212255 M e nomLeu3.chr10 97867613 301 + 106955855 I a score=-10916.000000 s hg38.chr12_KI270834v1_alt 69640 18 + 119498 agagagagagagagagag--------------- s panTro5.chr12 127355717 2 + 137163284 ----------------ac--------------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706938 18 + 135337776 acacacacacagagagag--------------- i panPan2.chr12 C 0 C 0 s manLeu1.NW_012103587v1 572075 8 + 6255621 ----------agagagag--------------- i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114812713 12 + 124281992 ------acacatatacac--------------- i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2871582 12 + 4466143 ------acacacacacac--------------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1578262 12 + 5364348 ------acacgtatacac--------------- i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33158483 31 - 38964690 --taagaaaaaAAAAGAATTTTTTTTTCTTGGA i canFam3.chr26 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124810215 0 + 151834684 C e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I e otoGar3.GL873618 4304379 0 + 7922563 C e saiBol1.JH378194 456774 241 - 9212255 M e colAng1.NW_012116043v1 4612980 10 - 8658521 I e chlSab2.chr11 119235589 0 + 128539186 C e cerAty1.NW_012001186v1 12263774 0 + 20526591 C e macNem1.NW_012010578v1 10640054 0 - 16319837 C e macFas5.chr11 128241464 0 + 137757926 C e rheMac8.chr11 123993363 0 + 133663169 C e nomLeu3.chr10 97867613 301 + 106955855 I e gorGor5.CYUI01015152v1 8219885 0 - 8369578 C a score=36902.000000 s hg38.chr12_KI270834v1_alt 69658 26 + 119498 agagagagagagagagagagagagag s panTro5.chr12 127355719 26 + 137163284 acacagagagagagagagagagagag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706956 26 + 135337776 agagagagagagagagagagagagag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219885 21 - 8369578 ----agagagagagagagagaga-ag i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993363 22 + 133663169 ----acacagagagagagagagagag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128241464 22 + 137757926 ----agagagagagagagagagagag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640054 22 - 16319837 ----agagagagagagagagagagag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263774 22 + 20526591 ----acagagagagagagagagagag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235589 4 + 128539186 ----------------------agac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572083 26 + 6255621 agagagagagagagagagagagagag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4612990 26 - 8658521 acacacacacacacacacacacacac i colAng1.NW_012116043v1 I 10 C 0 s calJac3.chr9 114812725 12 + 124281992 --------------atatacacaAAA i calJac3.chr9 C 0 C 0 s aotNan1.NW_018491581v1 1578274 4 + 5364348 ----------------------aAAA i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33158514 6 - 38964690 --------------------AGAGAG i canFam3.chr26 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124810215 0 + 151834684 C e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I e otoGar3.GL873618 4304379 0 + 7922563 C e cebCap1.NW_016107484v1 2871594 0 + 4466143 C e saiBol1.JH378194 456774 241 - 9212255 M e nomLeu3.chr10 97867613 301 + 106955855 I a score=29610.000000 s hg38.chr12_KI270834v1_alt 69684 3 + 119498 aga s panTro5.chr12 127355745 3 + 137163284 aga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125706982 3 + 135337776 aga i panPan2.chr12 C 0 M 55 s gorGor5.CYUI01015152v1 8219906 3 - 8369578 aga i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993385 3 + 133663169 aga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128241486 3 + 137757926 aga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640076 3 - 16319837 aga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263796 3 + 20526591 aga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235593 3 + 128539186 aGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572109 3 + 6255621 aga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4613016 3 - 8658521 aGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114812737 3 + 124281992 AGA i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2871594 3 + 4466143 aGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1578278 3 + 5364348 AGA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4304379 3 + 7922563 AGA i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124810215 0 + 151834684 C e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I e canFam3.chr26 33158520 0 - 38964690 C e saiBol1.JH378194 456774 241 - 9212255 M e nomLeu3.chr10 97867613 301 + 106955855 I a score=107677.000000 s hg38.chr12_KI270834v1_alt 69687 15 + 119498 ATATATTCCCTGGAA s panTro5.chr12 127355748 15 + 137163284 ATATATTCCCTGGAA i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219909 15 - 8369578 ATATATTCCGTGGAA i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993388 15 + 133663169 ATATATTGCCTGGAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128241489 15 + 137757926 ATATATTGCCTGGAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640079 15 - 16319837 ATATATTGCCTGGAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263799 15 + 20526591 ATATATTGTCTGGAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235596 15 + 128539186 ATATATTCCCTGGAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572112 15 + 6255621 ATATATTGCCTGGAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4613019 15 - 8658521 ATATATCCCCTGGAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114812740 15 + 124281992 ATATATTTCCTGGAA i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2871597 15 + 4466143 ATATATTCCCTGGAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1578281 15 + 5364348 ATATATTCCCTGGAA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4304382 15 + 7922563 ATATATTCCTTCAGA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33158520 9 - 38964690 ------TCCCTGGCA i canFam3.chr26 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124810215 0 + 151834684 C e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I e saiBol1.JH378194 456774 241 - 9212255 M e nomLeu3.chr10 97867613 301 + 106955855 I e panPan2.chr12 125706985 55 + 135337776 M a score=181065.000000 s hg38.chr12_KI270834v1_alt 69702 23 + 119498 TTGAGATGACTATGCCCAAAGGC s panTro5.chr12 127355763 23 + 137163284 TTGAGATGACTATGCCCAAAGGC i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219924 23 - 8369578 TTGAGATGACTATGCCCAAAGGC i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993403 23 + 133663169 TTGAGGTGACTATGCCCAAAGGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128241504 23 + 137757926 TTGAGGTGACTATGCCCAAAGGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640094 23 - 16319837 TTGAGGTGACTATGCCCAAAGGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263814 23 + 20526591 TTGAGATGACTATGCCCAAAGGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235611 23 + 128539186 TTGAGATGACTATGCCCAAAGGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572127 23 + 6255621 TTGAGGTGACTATGCCCAAAGGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4613034 23 - 8658521 TTGAGATGACTATGCCCAAAGGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114812755 22 + 124281992 TT-AGATGACTATGTCCAAAGGC i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2871612 23 + 4466143 TTGAGGTGACTGTGTCCAAAGGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1578296 23 + 5364348 TTGAGATGAGTCTGTCCAAAGGC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4304397 23 + 7922563 TTGGGATGGCTGTGCCTTACAGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124810215 18 + 151834684 CTGAGGTGGCCACGT-----GGC i mm10.chr5 C 0 C 0 s canFam3.chr26 33158529 23 - 38964690 TTGGGCTAACTGTGCCCCAAAGT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838055 52 - 1116856 I e saiBol1.JH378194 456774 241 - 9212255 M e nomLeu3.chr10 97867613 301 + 106955855 I e panPan2.chr12 125706985 55 + 135337776 M a score=479387.000000 s hg38.chr12_KI270834v1_alt 69725 58 + 119498 ACA----GATATTTGTGAGGCACCGTTTTTCCT----GCACA----CTGTAAAATGGGCCCTGGGGCTGT s panTro5.chr12 127355786 58 + 137163284 ACA----GATATTTGTGAGGCACAGTTTTTCCT----GCACA----CTGTAAAATGGGCCCTGGGGCTGT i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8219947 58 - 8369578 ACA----GATATTTGTGAGGCACAGTTTTTCCT----GCACA----CTGTAAAATGGGCCCTGGGGCTGA i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993426 58 + 133663169 ACA----GGTATTTGTGAGGCACAGTTTTTCCT----GCACA----CTGTAAAATAGGCCCTGGGGCTGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128241527 58 + 137757926 ACA----GGTATTTGTGAGGCACAGTTTTTCCT----GCACA----CTGTAAAATAGGCCCTGGGGCTGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640117 58 - 16319837 ACA----GGTATTTGTGAGGCACAGTTTTTCCT----GCACA----CTGTAAAATAGGCCCTGGGGCTGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263837 58 + 20526591 ACA----GGTATTTGTGAGGCACAGTTTTTCCT----GCACA----CTGTAAAATAGGCCCTGGGGCTGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235634 58 + 128539186 ACA----GGTGTTTGTGAGGCACAGTCTTTCCT----GCATG----CTGTAAAATAGGCCCTGGGGCTGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572150 58 + 6255621 ACA----GGTATTTGTGAGGCACAGTTTTTCCT----GCACA----CTGTAAAATAGGCCCTGGGGCTGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4613057 58 - 8658521 ACA----GGTATTTGTGAGGCACAGTTTTTCCT----GCACA----CTGTAAAATAGGCCCTGGGGCTGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114812777 58 + 124281992 ACA----GATATTTGTGAGGCACAGTGTTTCCT----GCACA----CTGCAAAACAGGCTCTGGGGCTGT i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2871635 58 + 4466143 ACA----GATATTTGTGAGGCACACTGTTTCCT----GCACA----CTGCAAAACAGGCCCTGGGGCTGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1578319 58 + 5364348 ACA----GATATTTGTGAGGCACAGTGTTTCCT----GCACA----CTGCAAAACAGGCTCTGGGGCTGT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4304420 57 + 7922563 TTT----GATATTTGTGGGGCAGAGTTTTTTAT-----TACA----CTGTAAGATTGGCCCTCTGACTGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124810233 43 + 151834684 AAAATTGGATGCCTGTG-GGCCGAGTTTTTCAG----GCATG----CTGTGT------------------ i mm10.chr5 C 0 C 0 s canFam3.chr26 33158552 66 - 38964690 ATG----GATATTTGTAAGGCAGAGTTTTATTTTATGGCACAGATGCCATAAAATAGGCCTGTAGGCTGT i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 838107 58 - 1116856 ATG----GATGTTAGCAAGGCAAAGTTTCTGAG----GCATA----CTGTAAAATTAGCCCATGGCCTGT i dasNov3.JH568189 I 52 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e saiBol1.JH378194 456774 241 - 9212255 M e nomLeu3.chr10 97867613 301 + 106955855 I e panPan2.chr12 125706985 55 + 135337776 M a score=1294944.000000 s hg38.chr12_KI270834v1_alt 69783 165 + 119498 GTTTTGCTAACC-CCGGAGTAACTCAG-----GACCAGCTCTGCAGAATCTGGATTAATCGGTACTTTCAATCTGTCTTTCCTTCCTCCATTTTAATATGAGA-CATTCTCTGCTTTGAGCTGAATGCATTTAACAACCTATCAG-ATAATCCAGGTGATGTGATCTTGACAC s panTro5.chr12 127355844 164 + 137163284 GTTTTGCTAATC-CCGGAGTAACTCAG-----GACCAGCTCTGCAGAATCTGGATTAATCGGTACTTTCAATCTGTCTTTCCTTCCTCCATTTTAATATGAGA-CATTCTCTGCTTTGAGCTGAATGCATTTAA-AACCTATCAG-ATAATCCAGGTGGTGTGATCTTGACAC i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8220005 164 - 8369578 GTTTTGCTAATC-CTGGAGTAACTCAA-----GACCAGCTCTGCAGAATCTGGATTAAT-GGTACTTTCAATCTGTCTTTCCTTCCTCCATTTTAATATGAGA-CATTCTCTGCTTTGAGCTGAATGCATTTAACAACCTATCAG-ATAATCCAGGTGATGTGATCTTGACAC i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993484 163 + 133663169 GTTTTGCTAACC-CCGGAATAA--CAA-----GACCAGCTCTGCAGAATCTGGATTAATCGGTACTTTCAATCTGTCTTTCCTTCCTTCATTTTAACGTGAGA-CAGTCTCTGCTTTGAGCTGAATGCATTTAACAGCCTATCAG-ATAATCTAGGTGATGTGATCTTGCCAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128241585 163 + 137757926 GTTTTGCTAACC-CCGGAATAA--CAA-----GACCAGCTCTGCAGAATCTGGATTAATCGGTACTTTCAATCTGTCTTTCCTTCCTTCATTTTAACGTGAGA-CAGTCTCTGCTTTGAGCTGAATGCATTTAACAGCCTATCAG-ATAATCTAGGTGATGTGATCTTGCCAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640175 163 - 16319837 GTTTTGCTAACC-CCGGAATAA--CAA-----GACCAGCTCTGCAGAATCTGGATTCATCGGTACTTTCAATCTGTCTTTCCTTCCTTCATTTTAACGTGAGA-CAGTCTCTGCTTTGAGCTGAATGCATTTAACAGCCTATCAG-ATAATCTAGGTGATGTGATCTTGCCAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12263895 163 + 20526591 GTTTTGCTAACC-CCGGAATAA--CAA-----GACCAGCTCTGCAGAATCTGGATTAATCGGTACTTTCAATCTGTCTTTCCTTCCTTCGTTTTAACGTGAAA-CATTCTCTGCTTTGAGCTGAATGCATTTAACAGCCTATCAG-ATAATCTAGGTGATGTGATCTTGACAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235692 163 + 128539186 GTTTTGCTAACC-CTGGAATAA--CAA-----GACGAGCTCTGCAGAATCTGGATTAATCTGTACTTTCAATCTGTCTTTCCTTCCTTCATTGTAACGTAAGA-CATTCTCTGCTTTGAGCTGAATGCGTTTAACAGCCTATCAG-ATAATCTAGGTGATGTGATCTTGACAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572208 163 + 6255621 GTTTTGCTAACC-CCGGAATAA--CAA-----GACCAGCTCTGCAGAATCTGGATTAATCGATACTTTCAATCTGTCTTTCCTTCCTTCGTTTTAACGTGAGA-CATTCTCTGCTTTGAGCTGAATGCATTTAACAGCCTATCAG-ATAATCTAGGTGATGTGATCTTGACAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4613115 163 - 8658521 GTTTTGCTAACC-CCGGAATAA--CAA-----GACGAGCTCTGCAGAATCTGGATTAATTGGTACTTTCAATCTGTCTTTCCTTCCTTCATTTTAACATGAGA-CATTCTCTGCTTTGAGCTGAATGCATTTAACAGCCTATCAG-ATGATCTAGGTGATGTGATCTTGACAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114812835 165 + 124281992 GTTTTGCTAACC-CCGGTATAATTCAA-----GACCAGCTCTGCAGAATCTGGATGAATCAATTCTTTCAATCTGTCTTTCCTTCCTTCATTTTAACATGAGA-CATTCTCTGCATTGAGCTGAATGCATGTAACAGTTTGTTAG-GTAATCCAGGCCATGTGATCTTGACAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 457015 165 - 9212255 GTTTTGCTCACC-CCCGTGTAACTCAA-----GAGCAGCTCTGCAGAATCTGGATGAATCAGTTCTTTCAATCTGTCTTTCCTTCCTTCATTTTAACATGAGA-CATTCTCAACTTTGAGCTGAATGCATTTAACAGTCTGTTAG-GTAATCCAGGCCTCGTGATCTTGACAC i saiBol1.JH378194 M 241 C 0 s cebCap1.NW_016107484v1 2871693 164 + 4466143 -GTTTGCTAACC-CCTGTATAACTCAG-----GACCAGCTCTGCAGAATCTGGATGAATCAATTCTTTCAATCTGTCTTTCCTTCCTTCATTTTAACATGAGA-CATTCTCTACTTTGAGCTGAATGCATTTAACAATCTGTTAG-GTAATCCAGGCCATGTGATCTTGACAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1578377 165 + 5364348 CTTTTGCTAACC-CCGGTATAACTCAA-----GACCAGCTCTGCAGAATCTGGATGAATCAATTCTTTCAATCTGTCTTTCCTTCCTTCATTTTAACATGAGA-CATTCTCTACTTTGAGCTGAATGCATTTAACAGTCTGCTAG-GTAATCCAGGCCATGTGATCTTGACAC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4304477 155 + 7922563 GGTTTGCTGA----CGGTATAATTCAA-----GATCAGTTCTGCAGAA----GGTGAATTTGCCCTTTTGATCAATTTTTCCT---TTCATTTTAATATGAGA-CATAGTCAGCTTTGTGGTAAGTATATTCAACAGTCTGTCAG-GGGACTGGAGACATGTAGTTTCAGCAC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124810276 114 + 151834684 GTAGTCTGAGTC-ACAGAAAGA-------------------TGCAGAACCTGGAACAGC--------------------TCCTTCCCTCATGT----------------TCTCCCCCAAGCCTGTTGCA--AACCAGGCTGTCAGTATGACCCAAGTAGAGAGAT-TTGTCTC i mm10.chr5 C 0 C 0 s canFam3.chr26 33158619 165 - 38964690 GTTTCCCGGTCC-CTGGTGTAACTTAA-----GGTCAAATCCACAGCATCTGGCTGAATGGTTACTTTTGGCCAATCTTTTTTTCCTTCATTTTAATTGAAGG-CACATTCTGCTTTGCAGTGAGTGTGTTTTGCCATCTGTCAG-ATAGTCCAAGGGACGTGGGTTTAGCCC i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 838165 103 - 1116856 GGTTTGCCAATCTCTGATATAACGCAATAAAGGGTCAAATCTGCAAAGTCT-------------------------------TTCCTTCCTTTTCATATAAAAGCAGAATCTGCTTTGAGGTGGATGTAGCGAA--------------------------------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e nomLeu3.chr10 97867613 301 + 106955855 I e panPan2.chr12 125706985 55 + 135337776 M a score=895821.000000 s hg38.chr12_KI270834v1_alt 69948 103 + 119498 TGGAAGCCATCATTCATTC----TTTCAGCGGGTGTATAGGAAGGCCCACCTTTGC---CGATA--TGTGCTGGGTGT----CA---TCCAGCGGTGGGTAACCGAATAAGCCCACCCA s panTro5.chr12 127356008 103 + 137163284 TGGAAGCCATCATTCATTC----TTTCAGCGGGTGTGTAGGAAGGCCCACCTTTGC---TGATA--TGTGCTGGGTGT----CA---TCCAGCGGTGGGTAACCAAATAAGCCCACCCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125707041 103 + 135337776 TGGAAGCCATCATTCATTC----TTTCAGCGGGTGTGTAGGAAGGCCCACCTTTGC---TGATA--TGTGCTGGGTGT----CA---TCCAGCGGTGGGTAACCAAATAAGCCCACCCA i panPan2.chr12 M 55 C 0 s gorGor5.CYUI01015152v1 8220169 103 - 8369578 TGGAAGCCATCATTCATTC----TTTCAGCGGGTGTATAGGAAGGCCCACCTTTGC---CGATA--TGTGCTGGGTGT----CA---TCCAGCGGTGGGTAACCGAATAAGCCCACCCA i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993647 101 + 133663169 TGGAAGCCATCATTAATTC----TTTCAGCGGGTGTATAGGAAGGCCCACCCTTGC---CAGTG--TGTGCTGGGTGT----CA---TCCAGTGGT-GGTAACTGAACAATCCCA-CCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128241748 101 + 137757926 TGGAAGCCATCATTAATTC----TTTCAGCGGGTGTATAGGAAGGCCCACCCTTGC---CAGTA--TGTGCTGGGTGT----CA---TCCAGTGGT-GGTAACTGAACAATCCCA-CCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640338 102 - 16319837 TGGAAGCCATCATTAATTC----TTTCAGCGGGTGTATAGGAAGGCCCACCCTTGC---CAGTA--TGTGCTGGGTGT----CA---TCCAGTGGT-GGTAACTGAACAATCCCACCCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12264058 103 + 20526591 TGGAAGCCATCATTAATTC----TTTCAGCGGGTGTATAGGAAGGCCCACCCTTGC---CAGTA--TGTGCTGGGTGT----CA---TCCAGTGGTGGGTAACTGAACAATCCCACCCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235855 103 + 128539186 TGGAAGCCATCATTAATTC----TTTCAGCAGTTATATAGGAAGGCCCACCCTTGC---CAGTA--TGTGCTGGGTGT----CA---TCCAGCGGTGGGTCACTGAACAATCCCACCCG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572371 103 + 6255621 TGGAAGCCATCGTTAATTC----TTTCAGCGGGTGTATAGGAAGGCCCACCCTTGC---CAGTA--TGTGCTGGGTGT----CA---TCCAGTGGTGGGTAACTGAACAATCCCACCCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4613278 103 - 8658521 TGGAAGCCATCATTAATTC----TTTCAGCGGGTGTATGGGAAGGCTCACCCTTGC---CAGTA--TGTGCTGGGTGT----CA---TCCAGCGGTGGGTAACTGAATAATCCCACCCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114813000 103 + 124281992 TGGAAGCCATCATTCATTC----TTTCAGCAGGTGTATAGGAAGGCCCACCTTTGC---TGGTA--TGTGCTGGGTGC----CG---TCCAGCAGTGGGTGACTGAATAAGTCCACCCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 457180 102 - 9212255 TGGAAGCTGTCATTCATTC----TTTCAGCAGGTGGATAGG-GGGCCCACCTTTGC---TGGTA--TGTGCTGGGTGC----TG---TCCAGCAGTGGGTAACTGAATCAGCTCACCCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2871857 103 + 4466143 TGGAAGCCATCATTCATTC----TTTCAGCAGGTGTATAGGAAGGCCCGCCTTTGC---TGGTA--TGTGCTGGGTGC----TG---TCCAGCAGTGGGTAACTGAATGAGCCCACCCA i cebCap1.NW_016107484v1 C 0 I 23 s aotNan1.NW_018491581v1 1578542 103 + 5364348 TGGAAGCCATCATTCATTC----TTTCAGCAGGTATATAGGAAGGCCCACCTTTGC---TGGTA--TGTGGTGGGTGC----TG---TCCAGCGGTGGGCAACTGAATAAGCCCACCCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4304632 95 + 7922563 TGGAAGGGATCATTAATTC----TTTCAACAGATTAATAGGAAGGCCCACCTTT--------TG--TCTGATTCGTG----------TCCAATGATGAAAGGCTGATTAAGCCCACCCC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124810390 94 + 151834684 TGAGAAAGATCACCAGTCA----TTCTAGT------------AGTCTCCCTTCCAC---CACTG--TGTGCTGGACAC----TGGGCTCTGTCACAGAGTGGCTGAGTCCACCTATCCA i mm10.chr5 C 0 C 0 s canFam3.chr26 33158784 71 - 38964690 TGGAAGAGATGATTGatttattgctttaacagacttagagggaggcctgc-tttgcatacactc--tgtgctgg--------------------------------------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838268 107 - 1116856 -GGCAGCGATCATCAGTTC----TTTCAACCTATTTTATGCAAGCTCCCCTTGTGC---CTGAAATTTTGCTGTGTGCAGGATA---GACAGTAGTCAATGGCTGAATAAACTCACCA- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e nomLeu3.chr10 97867613 301 + 106955855 I a score=82418.000000 s hg38.chr12_KI270834v1_alt 70051 9 + 119498 GTCCTCGGG s panTro5.chr12 127356111 9 + 137163284 GTCCCCGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125707144 9 + 135337776 GTCCCCGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8220272 9 - 8369578 GTCCCCGGG i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993748 9 + 133663169 GCCCCTGGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128241849 9 + 137757926 GCCCCTGGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640440 9 - 16319837 GCCCCTGGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12264161 9 + 20526591 GCCCCTGGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235958 9 + 128539186 GCCCCTGGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572474 9 + 6255621 GCCCCTGGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4613381 9 - 8658521 GCCCCTGGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114813103 9 + 124281992 GTCCCCGGG i calJac3.chr9 C 0 I 14 s saiBol1.JH378194 457282 9 - 9212255 GCCCCCGGG i saiBol1.JH378194 C 0 I 9 s aotNan1.NW_018491581v1 1578645 9 + 5364348 GCCCCCGGG i aotNan1.NW_018491581v1 C 0 I 14 s otoGar3.GL873618 4304727 9 + 7922563 ACCCCCAGC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124810484 9 + 151834684 GCTGCCGAG i mm10.chr5 C 0 I 20 s dasNov3.JH568189 838375 9 - 1116856 GCCGCCAGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e canFam3.chr26 33158855 0 - 38964690 C e cebCap1.NW_016107484v1 2871960 23 + 4466143 I e nomLeu3.chr10 97867613 301 + 106955855 I a score=478666.000000 s hg38.chr12_KI270834v1_alt 70060 103 + 119498 CGGGCGA---------GGGGAGCAACAGGGCAGAGTTAGACGTGGTGATCGCTTCTGAAAACCCAAGGCCCTTCTGCC--ACGGTGTCTTGGCCTTTAGGGAAGACAGGG--CTTC s panTro5.chr12 127356120 103 + 137163284 CAGGCGA---------GGGGAGCAACAGGGCAGAGTTAGACGTGGTGATCGCTTCTGAAAACCCAAGGCCCTTCTGCC--ATGGTGTCTTGGCCTTTAGGGAAGACAGGG--CTTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125707153 103 + 135337776 CAGGCGA---------GGGGAGCAACAGGGCAGAGTTAGACATGGTGATCGCTTCTGAAAACCCAAGGCCCTTCTGCC--ATGGTGTCTTGGCCTTTAGGGAAGACAGGG--CTTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8220281 103 - 8369578 CGGGCGA---------GGGGAGCAACAGGGCAGAGTTAGACGTGGTGATCGCTTCTGAAAACCCAAGGCTCTTCTGCC--ACGGTGTCTTGGCCTTTAGGGAAGACAGGG--CTTC i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993757 101 + 133663169 CGGGCGG---------GGAGGGCAACA-GGCAGAGACAGAGGTGGCGATTGCTTCTG-AAACCCAAGGCTCTTCTGCT--GTGGCGTCTTGGCCTTTAGGGAAGACAGGG--CTTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128241858 101 + 137757926 CGGGCGG---------GGAGGGCAACA-GGCAGAGACAGAGGTGGCGATTGCTTCTG-AAACCCAAGGCTCTTCTGCC--ATGGCGTCTTGGCCTTTAGGGAAGACAGGG--CTTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640449 102 - 16319837 CGGGCGG---------GGAGGGCAACA-GGCAGAGACAGAGGTGGTGATTGCTTCTGAAAACCCAAGGCTCTTCTGCC--ATGGCGTCTTGGCCTTTAGGGAAGACAGGG--CTTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12264170 102 + 20526591 CGGGCGG---------GGAGCGCAACA-GGCAGAGACAGAGGTGGTGATTGCTTCTGAAAACCCAAGGCTCTTCTGCC--ATGGCGTCTTGGCCTTTAGGGAAGACAGGG--CTTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119235967 102 + 128539186 CGGGCCG---------GGAGGGCAACA-GGCAGAGACAGAGGTGGTGATTGCTTCTGAAAACCCAAGGCTCTTCTGCC--ATGGTGTCTTGGCCTTTAGGGAAGACAGGG--CTTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572483 102 + 6255621 CGGGCGG---------GGAGGGCAACA-GGCAGAGACAGAGGTGGTGATTGCTTCTGAAAACCCAAGGCTCTTCTGCC--ATGGCGTCTTGGCCTTTAGGGAAGACAGGG--CTTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4613390 102 - 8658521 CGGGCGG---------GGAGGGCAACA-GGCAGAGACAGAGGTGGTGATTGCTTCTGAAAACCCAAGGCTCTTCTGCC--ATGGTGTCTTGGCCTTTAGGGAAGACAGGG--CTTC i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4304736 80 + 7922563 ----------------------------GGTGGGACTAGGTATGTTGATCTC-TCTGAGATTTCAGTCGCCTTCTGCC--AT---GTCTTAGCCATTAGGGAAGACAGAT--CTTC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124810513 98 + 151834684 TGGGCTA---------GGGGATCA----GTCAGGGTTGATTGTGGGTCCCAGTCCTGAAGGTCCA-GCTTCTCCTG----ATGGTGCCTGAGTGCTGGGGAAAGGCAGAGAACTCC i mm10.chr5 I 20 C 0 s canFam3.chr26 33158855 80 - 38964690 -ggacaa---------gggacacaCCA----AGGACGCTGGGTGTATTTCCCTCCTGAGACCCTGAGACCCCCTCCCCGAACAGTGTCACAGCC---------------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838384 96 - 1116856 TAGGAAGTTGCTCACTGGCAAATAACAATGCCCGATTAGATGCAGCCATCTCTCCTGAAACCTCAAGTTCCT-----C--A-----------CTCTCAGGAAGGAAAGAG--ATTC i dasNov3.JH568189 C 0 I 40 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e aotNan1.NW_018491581v1 1578654 14 + 5364348 I e cebCap1.NW_016107484v1 2871960 23 + 4466143 I e saiBol1.JH378194 457291 9 - 9212255 I e calJac3.chr9 114813112 14 + 124281992 I e nomLeu3.chr10 97867613 301 + 106955855 I a score=218943.000000 s hg38.chr12_KI270834v1_alt 70163 45 + 119498 CTAACAGTAGGGAAGGAATtaggtaacagagtgagaccctgtctc s panTro5.chr12 127356223 45 + 137163284 CTAACAGTAGGGAAGGAATtaggtaacagagtgagaccctgtctc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125707256 45 + 135337776 CTAACAGTAGGGAAGGAATtaggtaacagagtgagaccctgtctc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8220384 45 - 8369578 CTAACAGTAGGGAAGGAATtaggtaacagagtgagaccctgtctc i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123993858 45 + 133663169 CTAACAGTAGGGAAGGAATTGGGCAACAGAGTAAAACCCTGTCTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128241959 45 + 137757926 CTAACAGTAGGGAAGGAATTGGGCAACAGAGTAAAACCCTGTCTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640551 45 - 16319837 CTAACAGTAGGGAAGGAATTGGGCAACAGAGTAAAACCCTGTCTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12264272 45 + 20526591 CTAACAGTAGGGAAGGAATtgggcaacagagtaagaccctgtctc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119236069 45 + 128539186 CTAACAGTAGGGAAGGAActgggcaacagagtaagaccctgtctc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572585 45 + 6255621 CTAACAGTAGGGAAGGAATTGGACAACAGAGTAAAACCCTGTCTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4613492 45 - 8658521 CTAACAGTAGGGAAGGAATtgggcaacagagtaagaccctgtctc i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4304816 34 + 7922563 CTATTAGT-GGGAAGGA----------AGACTGGCTTTCCGTGTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124810611 33 + 151834684 CT------------GGCCCAGGGCAGAAGGGTTGGCTTCTGTGTT i mm10.chr5 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838480 40 - 1116856 I e canFam3.chr26 33158935 0 - 38964690 C e aotNan1.NW_018491581v1 1578654 14 + 5364348 I e cebCap1.NW_016107484v1 2871960 23 + 4466143 I e saiBol1.JH378194 457291 9 - 9212255 I e calJac3.chr9 114813112 14 + 124281992 I e nomLeu3.chr10 97867613 301 + 106955855 I a score=84832.000000 s hg38.chr12_KI270834v1_alt 70208 29 + 119498 aagaaaaaaaaaaaaaaa----------aaAGAAGGATT s panTro5.chr12 127356268 29 + 137163284 aaaaaaaaaaaaaaaaaa----------gaAGAAGGATT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125707301 35 + 135337776 aaaaaaaaaaaaaaaaaaaa----AAAGAAAGAAGGATT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8220429 29 - 8369578 caaaaaaaaaaaaaaaaa----------aaAAAAGGATT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97867914 29 + 106955855 aaaaaaaaaaaaaaaaaa----------aaagaaGGATT i nomLeu3.chr10 I 301 C 0 s rheMac8.chr11 123993903 39 + 133663169 AAaaaccaaaaacaacaaacaaacaaacaaaaaaGGATT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128242004 39 + 137757926 AAaaaccaaaaacaacaaacaaacaaacaaaaaaGGATT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640596 39 - 16319837 AAaaaccaaaaacaacaaacaaacaaacaaaaaaGGATT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12264317 39 + 20526591 aagaaacaaaaacaacaaaCAAACAAACAAAAAAGGATT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119236114 39 + 128539186 aaaaaaaaaaaaaacaacaaCAACAAACAAAAAAGGATT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572630 39 + 6255621 AAaaaccaaaaacaacaaacaaacaaacaaaaaagcaTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4613537 36 - 8658521 aaaaaacaaaaa---caaacaaaCAAACAAAAAAGGATT i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4304850 15 + 7922563 ------------------------ATCAGAGAAATTGCT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124810644 19 + 151834684 --------------------AGAGAAATCACCAGGGACA i mm10.chr5 C 0 C 0 s canFam3.chr26 33158935 24 - 38964690 -----AGAGGAAGGGAAA----------GAGAAACTGCT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838480 40 - 1116856 I e aotNan1.NW_018491581v1 1578654 14 + 5364348 I e cebCap1.NW_016107484v1 2871960 23 + 4466143 I e saiBol1.JH378194 457291 9 - 9212255 I e calJac3.chr9 114813112 14 + 124281992 I a score=18358.000000 s hg38.chr12_KI270834v1_alt 70237 2 + 119498 AG s panTro5.chr12 127356297 2 + 137163284 GG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125707336 2 + 135337776 GG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8220458 2 - 8369578 GG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97867943 2 + 106955855 GG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123993942 2 + 133663169 GG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128242043 2 + 137757926 GG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640635 2 - 16319837 GG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12264356 2 + 20526591 GG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119236153 2 + 128539186 GG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572669 2 + 6255621 GG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4613573 2 - 8658521 GG i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4304865 2 + 7922563 GG i otoGar3.GL873618 C 0 I 2 s mm10.chr5 124810663 2 + 151834684 GA i mm10.chr5 C 0 I 1 s canFam3.chr26 33158959 2 - 38964690 GG i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 838520 2 - 1116856 AG i dasNov3.JH568189 I 40 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e aotNan1.NW_018491581v1 1578654 14 + 5364348 I e cebCap1.NW_016107484v1 2871960 23 + 4466143 I e saiBol1.JH378194 457291 9 - 9212255 I e calJac3.chr9 114813112 14 + 124281992 I a score=43049.000000 s hg38.chr12_KI270834v1_alt 70239 5 + 119498 CACGG s panTro5.chr12 127356299 5 + 137163284 CACGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125707338 5 + 135337776 CACGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8220460 5 - 8369578 CACGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97867945 5 + 106955855 CACGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123993944 5 + 133663169 CATGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128242045 5 + 137757926 CATGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640637 5 - 16319837 CATGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12264358 5 + 20526591 CATGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119236155 5 + 128539186 CATGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572671 5 + 6255621 CATGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4613575 5 - 8658521 CATGG i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 457300 5 - 9212255 CGCAA i saiBol1.JH378194 I 9 C 0 s otoGar3.GL873618 4304869 5 + 7922563 CTTGG i otoGar3.GL873618 I 2 C 0 s mm10.chr5 124810666 5 + 151834684 CACAG i mm10.chr5 I 1 C 0 s canFam3.chr26 33158963 5 - 38964690 CATGG i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 838522 5 - 1116856 CCTGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e aotNan1.NW_018491581v1 1578654 14 + 5364348 I e cebCap1.NW_016107484v1 2871960 23 + 4466143 I e calJac3.chr9 114813112 14 + 124281992 I a score=17345.000000 s hg38.chr12_KI270834v1_alt 70244 3 + 119498 -ATC s panTro5.chr12 127356304 3 + 137163284 -ATC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125707343 3 + 135337776 -ATC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8220465 3 - 8369578 -ATC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97867950 3 + 106955855 -ATC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123993949 3 + 133663169 -ATC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128242050 3 + 137757926 -ATC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640642 3 - 16319837 -ATC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12264363 3 + 20526591 -ATC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119236160 3 + 128539186 -ATC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572676 3 + 6255621 -ATC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4613580 3 - 8658521 -ATC i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 457305 3 - 9212255 -ATC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2871983 3 + 4466143 -ATC i cebCap1.NW_016107484v1 I 23 C 0 s aotNan1.NW_018491581v1 1578668 3 + 5364348 -ATC i aotNan1.NW_018491581v1 I 14 C 0 s otoGar3.GL873618 4304874 3 + 7922563 -GTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124810671 3 + 151834684 -GTT i mm10.chr5 C 0 C 0 s canFam3.chr26 33158968 2 - 38964690 -AC- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838527 3 - 1116856 GAC- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e calJac3.chr9 114813112 14 + 124281992 I a score=688661.000000 s hg38.chr12_KI270834v1_alt 70247 55 + 119498 ACTGCTGTGGCCCTGAAAAGCCACCAA-TAAGTGATAGCCATTCTTTTCTTGTC-CT s panTro5.chr12 127356307 54 + 137163284 ACTGCTGTGG-CCTGAAAAGCCACCAA-TAAGTGATAGCCATTCTTTTCTTGTC-CT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125707346 54 + 135337776 ACTGCTGTGG-CCTGAAAAGCCACCAA-TAAGTGATAGCCATTCTTTTCTTGTC-CT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8220468 54 - 8369578 ACTGCTGTGG-CCTGAAAAGCCACCAA-TAAGTGATAGCCATTCTTTTCTTGTC-CT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97867953 54 + 106955855 ACTGCTGTGG-CCTGAAAAGCCACCAA-TAAGTGATAGCCATTCTTTTCCTGTC-CT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123993952 55 + 133663169 ACTGCTGTGGTCCTGAAAAGCCACCAA-TAAGTGATAGCTGTTCTTTTCTTGTC-CT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128242053 55 + 137757926 ACTGCTGTGGTCCTGAAAAGCCACCAA-TAAGTGATAGCTGTTCTTTTCTTGTC-CT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640645 55 - 16319837 ACTGCTGTGGTCCTGAAAAGCCACCAA-TAAGAGATAGCTGTTCTTTTCTTGTC-CT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12264366 55 + 20526591 ACTGCTGTGGTCCTGAAAAGCCACCAA-TAAGTGATAGCTGTTCTTTTCTTGTC-CT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119236163 55 + 128539186 ACTGCTGTGGTCCTGAAAAGCCACCAA-TAAGTGATAGCTGTTCTTTTCTTGTC-CT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572679 55 + 6255621 ACTGCTGTGGTCCTGAAAAGCCACCAA-TAAGTAATAGCTGTTCTTTTCTTGTC-CT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4613583 55 - 8658521 ACTGCTGTGGTCCGGAAAAGCCACCAA-TAAGTGATAGCTGTTCTTTTCTTGTC-CT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114813126 55 + 124281992 ATTGCTGTGGTCCTGAAAAGCCACCAA-TAAGTGATAGCTGTCCTTTTCTTGTT-CT i calJac3.chr9 I 14 C 0 s saiBol1.JH378194 457308 55 - 9212255 ACTGCTGTGGGCCTGCAAAGCCACCAA-TAAGTGATAGCTGTTCTTTTCTTGTT-CT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2871986 55 + 4466143 ACTGCTGTGGTCCTGAAAAGCCACCAA-TAAGTGATAGCTGTTCTTTTCTTGTT-CT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1578671 55 + 5364348 ACTGCTGTGGTCCTGAAAAGCCACCAA-TAAGTGATAGCTGTTCTTTTCTTGTT-CT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4304877 55 + 7922563 GCAGCTGTGGTCTAGAAAAGTCACCAA-TAAGTAATAGCTTCCCTCTCTTTTCT-TT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124810674 41 + 151834684 -------------CCAGAAGTTGCC-A-CAAATAATAGCCGCTCACTTCCTTTT-TT i mm10.chr5 C 0 C 0 s canFam3.chr26 33158970 57 - 38964690 GGTCCTGTGGTCCAGAAAAAACACCAGCCAACTGGCAGCTACTCTTTTCCTTTCTCT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838530 55 - 1116856 AGTACTGTGGTTCAGAAAAGCCAGGGA-CAAGTGACAGCTGCTCTTCTCCTTTC-TT i dasNov3.JH568189 C 0 I 11 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I a score=6547872.000000 s hg38.chr12_KI270834v1_alt 70302 622 + 119498 ---ATTAAA-AACTT--TAACATC-A----Tttttttattgtagtaaaatatatgtaacataacattttccattttaagcattttgaaatgtacat---gtggcactaatcacattcgtaatgttgtgaaaccaacaccactgtctgttgccaaaac--ttttcatcatcccaaactgaaactccatacccgt-taaacacgaactccccatcgcccctccctccagcccctggcaacctcgaatctgtgttctgtctgtatgaatttgcctgttctagagagggttcgtataagtggaatcatgcaatgtttgtcctttggtgtctggcgtctttcacttagcatcatgttttt-gaggctcatccgtgtttcagca----tcggaacttcattcc-tttttacaagtgaatactatccc-cggtatagataggacaca-tt----t---tgttcatccattcctccgttgctggacgcttgggtc-tttccaccttttgcttattgtga-tagtct-acagtaaacattggcatacaagaattcattt--gagtccctgcttttcagttctttg-gggtatatacctaggagtggaattgttgagtcatataatagttctatatttaactctttgaagaatccctgttttccTTTCTT s panTro5.chr12 127356361 623 + 137163284 ---ATTAAA-AACTT--TAACATC-A----Tttttttattgtagtaaaatatatgtaacataacattttccattttaagcattttgaaatgtacgt---gtggcactaatcacattcgtaatgttgtgaaaccaacaccactatctgttgccaaaact-ttttcatcatcccaaactgaaactccatacccgt-taaacatgaactccccatcgcccctccctccagcccctggcaacctcgaatctatgttctgtctgtatgaatttgcctgttctagagagggttcgtataagtggaatcatgcaatgtttgtcctttggtgtctggcgtctttcaattagcatcatgttttt-gaggctcatccgtgtttcagca----tcggaacttcattcc-tttttacaagtgaatactatccc-cggtatagataggataca-tt----t---tgttcatccattcctccgttgctggacgcttgggtc-tttccacgttttgcttattgtga-tagtct-acagtaaacgttggcatgcaagaattcattt--gtgtccctgcttttcagttcttag-gggtatatacctaggagtggaattgttgagtcatataatagttctatatttaactctttgaagaatccctgttttccTTTCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125707400 623 + 135337776 ---ATTAAA-AACTT--TAACATC-A----Tttttttattgtagtaaaatatatgtaacataacattttccattttaagcattttgaaatgtacgt---gtggcactaatcacattcgtaatgttgtgaaaccaacaccactatctgttgccaaaact-ttttcatcatcccaaactgaaactccatacccgt-taaacatgaactccccatcgcccctccctccagcccctggcaacctcgaatctatgttctgtctgtatgaatttgcctgttctagagagggttcgtataagtggaatcatgcaatgtttgtcctttggtgtctggcgtctttcaattagcatcatgttttt-gaggctcatccgtgtttcagca----tcggaacttcattcc-tttttacaagtgaatactatccc-cggtatagataggataca-tt----t---tgttcatccattcctccgttgctggacgcttgggtc-tttccacgttttgcttattgtga-tagtct-acagtaaacgttggcatgcaagaattcattt--gtgtccctgcttttcagttctttg-gggtatatacctaggagtggaattgttgagtcatataatagttctatatttaactctttgaagaatccctgttttccTTTCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8220522 621 - 8369578 ---ATTAAA-AACTT--TAACATC-A-----ttttttattgtagtaaaatatatgtaacataacattttccattttaagcattttgaaatgtacat---gtggcactaatcacattcgtaatgttgtgaaaccaacaccactatctgtcgccaaaact-ttttcatcatcccaaactgaaactccacacccct-taaacacgaactccccatcgcccctccctccagcccctggcaacctcgaatctatgttctgtctgtatgaatttgcctgttctagagagggttcgtataagtgg-atcatgcagtgtttgtcctttggtgtctggcgtctttcacttagcatcatgttttt-gaggctcatccgtgtttcagca----tcggaacttcattcc-tttttacaagtgaatactatccc-cggtatagataggacaca-tt----t---tgttcatccattcctctgttgctggacgcttgggtc-tttccaccttttgcttattgtga-tagtct-acagtaaacgttggcatacaagaattcattt--gagtccctgcttttcagttctttg-gggtatacacttaggagtggaattgttgagtcatatgatagttctatatttaactctttgaagaatccctgttttccTTTCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97868007 623 + 106955855 ---ATTAAA-AACTT--TAACGTC-A-----ttttttattgtagtaaaatatatgtaacataacattttccattttaagcattttgaaatgtacat---gtggcactaatcccattcgtaatgttgtgaaaccaacaccactgtctgtcgccaaaact-ttttcatcatcccaaactgaagctccatacccgt-taaacacgaactccccatcgcccctccctgcagcccctggcaacctcgaatctatgttctgtctgtatgaatttgcctgttctagagagggttcgtgtaagtggaatcatgcaatatttgtcctttggtgtctggcgtctttcacttagcatcatgttttt-gaggctcatccatgtttcagca----tcggaacttcactcc-tttttacgagtgaatactatccc-tggtatagataggataca-tt----c---tgttcatccattcctctgttgctggacgcttgggtcatttccaccttttggttattgtga-tagtct-acagtaaacgttggcatacaagaattcattt--gagtccctgcttttcagttctttg-gggtatatacctaggagtggaattgttgagtcgtataatagttccatatttaactctttgaagaatccctgttttccTTTCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123994007 623 + 133663169 ---ATTAAA-AACTT--TAGCATC-T----Tttttttatcacagtaaaatatatgtaacctaacacgttccattttaagcattttgaaatgttcat---gtggcactaatcacattcgtaatgttgtgaaaccaacaccattatctgtcgccaaaact-ttttcatcatcccaaactgaaactccgtacccat-taaacactagctccccgccgcccctccctccagcccctggcaacctcgaatctactttctgtctgtatgaatttgcctattctagagagggttcgtgtatgtggaatcatgcagtatttgtcctttggtgtctggcatctttcacttagcatcatgttttt-gggactcatccatgtttcagca----tcggaacttcattcc--ttttacaagtgaatactatccc-cggtatagataggataca-tt----t---tgttcacccattcctctactgctggacgcttgggacctttccaccttgtggctattgtga-tagtct-acagtaaccattggcatacaagaattcattt--gagtccctgtttttcagttatttg-gggtatatacctaggagtggaattgttgagttgtataacaattttatatttgactctttgaagagccactgttttccTTTCTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128242108 623 + 137757926 ---ATTAAA-AACTT--TAGCATC-T----Tttttttatcacagtaaaatatatgtaacctaacacgttccattttaagcattttgaaatgttcat---gtggcactaatcacattcgtaatgttgtgaaaccaacaccactatctgtcgccaaaact-ttttcatcatcccaaactgaaactccgtacccat-taaacactagctccccgccgcccctccctccagcccctggcaacctcgaatctactttctgtctgtatgaatttgcctattctagagagggttcgtgtatgtggaatcatgcagtatttgtcctttggtgtctggcatctttcacttagcatcatgttttt-ggggctcatccatgtttcagca----tcggaacttcattcc--ttttacaagtgaatactatccc-cggtatagataggataca-tt----t---tgttcacccattcctctactgctggacgcttgggacctttccaccttgtggctattgtga-tagtct-acagtaaacattggcatacaagaattcattt--gagtccctgtttttcagttatttg-gggtatatacctaggagtggaattgttgagtcgtataacaattttatatttgactctttgaagagccactgttttccTTTCTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10640700 623 - 16319837 ---ATTAAA-AACGT--TAGCATC-T----Tttttttatcacagtaaaatatatgtaacctaacacgttccattttaagcattttgaaatgttcat---gtggcactaatcacattcgtaatgttgtgaaaccaacaccactatctgtcgccaaaact-ttttcatcatcccaaactgaaactccgtacccat-taaacacgagctccccgccgcccctccctccagcccctggcaacctcgaatctactttctgtctgtatgaatttgcctattctagagagggttcgtgtatgtggaatcatgcagtatttgtcctttggtgtctggcatctttcacttagcatcatgttttt-ggggctcatccatgtttcagca----tcggaacttcattcc--ttttacaagtgaatactatccc-cggtatagataggataca-tt----t---tgttcacccattcctctactgctggacgcttgggacctttccaccttgtggctattgtga-tagtct-acagtaaacattggcatacaagaattcattt--gagtccctgtttttcagttatttg-gggtatatacctaggagtggaattgttgagtcgtataacaattttatatttgactctttgaagagccactgttttccTTTCTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12264421 623 + 20526591 ---ATTAAA-AACTT--TAGCATC-T----Tttttttaccacagtaaaatatatgtaacctaacacgttccattttaagcattttgaaatgttcat---gtggcactaatcacattcgtaatgttgtgaaaccaacaccactatctgccgccaaaact-ttttcatcatcccaaactgaaactccgtacccat-taaacactagctccccgccgcccctccctccagcccctggcaacctcgaatctactttctgtctgtatgaatttgcctattctagagagggttcgtgtacgtggaatcatgcagtatttgtcctttggtgtctggcatctttcacttagcatcacgttttt-ggggctcatccatgtttcagca----tcggaacttcattcc--ttttacaagtgaatactatccc-cggtatagataggataca-tt----t---tgttcacccattcctctactgctggacgcttgggtcctttccaccttgtggctattgtga-tagtct-acagtaaacattggcatacaagaattcattt--gagtccctgtttttcagttatttg-gggtatatacctaggagtggaattgttgagtcatataataattttatatttgactctttgaagagccactgttttccTTTCTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119236218 621 + 128539186 ---ATTAAA-AACTT--TAACATC------Attttttatcacagtaaaatatatataacctaacatgttccattttaagcattttgaaatgtacat---gtggcactaatcacattcgtaatgttgtgaaaccaacaccactatctgtcgccaaaact-ttttcatcatcccaaactgaaactccgtacccgt-tgaacactagctccccgccgcccctccctccagcccctggcaacctcgaatctactttctgtctgtatcaatttgcctgttctagagagggttcgtgtacgtggaatcatgcaatatttgtcctttggt-tctggcatctttcacttagcatcatgttttt-ggggctcatacatgtttcagca----tcggaacttcattcc--ttttacaagtgaataccatccc-tggtatagctaggataca-tt----t---tgttcactcattcctctattgctggacgcttgggtcctttccaccttgtggttattgtga-tagtct-acagtaaacattggcatacaagaattcattt--gagtccctgtttttcagttcttcg-gggtatatacctaggagtggacttgttgagtcatataagaattttatatttgactctttgaagagccactgttttccTTTCTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 572734 624 + 6255621 ---ATTAAA-AACTT--TAGCATCTT----Tttttttatcacagtaaaatacatgtaacctaacacgttccattttaagcattttgaaatgttcat---gtggcactaatcacattcgtagtgttgtgaaaccaacaccactatctgccgccaaaact-ttttcatcatcccaaactgaaactccgtacccat-taaacactagctccccgccgcccctccctccagcccctggcaacctcgaatctactttctgtctgtatgaatttgcctattctagagagggttcgtgtacgtggaatcatgcagtatttgtcctttggtgtctggcatctttcacttagcatcacgttttt-ggggctcatccatgtttcagca----tcggaacttcattcc--ttttacaagtgaatattatccc-cggtatagataggataca-tt----t---tgttcacccattcctctactgctggacgcttgggtcctttccaccttgtggctattgtga-tagtct-acagtaaacattggcatacaagaattcattt--gagtccctgtttttcagttatttg-gggtatatacctaggagtggaattgttgagtcgtataataattttatatttgagtctttgaagagccactgttttccTTTCTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4613638 623 - 8658521 ---ATTAAA-AACTT--TAACATC-A----Tttttttatcacagtaaaatatatgtaacctaacatgttccattttaagcattttgaaatgtacgt---ctggcactaatcacattcgtaatgttgtgaaaccaacaccactatctgttgccaaaact-ttttcatcatcccaaactgaaactccatacccat-taaacactagctccccgccgccccttcctccagcctctggcaacctcgaatctactttctgtctggatgaatttgcctattctagagagggttcgtgtacatggaatcaggcaatatttgtcctttggtgtctggcatctttcacttagcatcatgttttt-ggggctcatccatgtttcagca----tcggaacttcattcc--ttttacaagtgaatactatccc-tggtatagataggataca-tt----t---tgttcacccattcctctattgctggacacttgggtcctttccaccttgtggttatcgtga-tagtct-acagtgaacgctggcatacaagaattcactt--gagtccctgttttccagttctttg-gggtatatacctaggagtggaattgttgagtcatataataattttatatttgactctttgaagagccactgttttccTTTCTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114813181 627 + 124281992 ---ATTAAA-AATTT--TAATATC-A-----ttttttattatagtaaaatacacgtaatgtaacattttccatttaaagcattttgaaatgtacat---gtggcactaatcgcattcataatgttgtgaaaccaacaccgctatctatctccaaaact-ctttcatcatcccaaa-tgaaactccatacccat-taagcactaactcccca-cacccctccgtccagcccctggccacctctgatctactttctgtctgtatgaatttgcctattccagagaggttttgtgtaagtggaagtaggcaatatttgtcctttggtgtctggcttctttcacttagcataacgttttt-gagacttatcgatgttttcgcatgcgttggaacttcattcc-tatttgtgggtgaatgacatccc-tgatacagacaggacaca-tt----t---tgttcatctgctactctgctgatggatgcttgggtcatttctaccttttggttattgtga-tagtct-gctgtgaacatgggtgtacaagaatttattttagagtccctgttttttagttctttt-gggtatatacctaggagtggaattgttgattcatataatagctctatatttaactttttgaagaatcCCTGATTTCCTTTCTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 457363 623 - 9212255 ---ATTAAA-AATTT--TAACATC-A------tttttattacagtaaaatacac-----ataacattttccatttaaagcattttgaaatgtacat---gtggcactaatcacattcataatgttgtgaaaccaacaccactctctatctccaaaact-ttttcatcaccccgaa-tgaaactccatacccat-taaacactaactccccatcacccctccctccagcccctggccacctctgatctactttctgtctgtatgaatttgcctattccagagaggttttgtgtaagtggaagcatgcaatatttgtcctttggtgtctggcttctttcacttagcataacgttttt-gagactcatcgatgttttagcatgcgtcggaacttcattcc-tttttatgggtgaataatatccc-cgatacagacaggatacattt----t---tgttcatctgttcctctgttgatggatgcttgggtcatttccaccttttggttattgtga-tagtct-tctgtgaaccttggtgtacaagaatttattttagagtccctgttttttagttcttgt-gggtacatacctaggagtggaattgttgattcatataatagctctatatttaactttttgaagaatcCCTGATTTTCTTTCTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2872041 617 + 4466143 ---ATTAAA-AACTT--TAACATC-A-----ttttttattatagtaaaatacacgtaacgtaacattttccatttaaagcattttgaaatgtacat---gtgccactaattgcattcataatattgtgaaaccaacaccactatctatctccaaaact-ttttcatcaccccgaa-tgaaactccatacccat-taaacactaactccccaccacccctctct-----------cgacctctgatctactttctgtctgcatgaatttgcctattccagagaggttttgcataagtagaagcatgtaatatttgtcctttggtgactggcttctttcacttagcataacgttttt-gagactcatcaatgttttagcatgcgtcgcaacttcattcc-tttttatgggtgaataatatccc-tgatacagacaggataca-tt----t---tgttcatctgttcctctgttgatagatgcttgggtcatttccaccttttggttattgtga-tagtct-gctgtgaacattggtgtacaagaatttattttagagtccctgttttttagttcttgt-gggcatatacctaggagtggaattgttgattcacatagtagctctatatttaactttttgaagaatcCCTGATTTCCTTTCTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1578726 628 + 5364348 ---ATTAAA-AATGT--TAACATC-T-----ttttttattatagtgaaatacctgtaacgtaacattttccatttaaagcattttgaaatgtacat---gtggcactaattgcattcataatgttgtgaaaccaacaccactgtctatctccaaaact-ttttcatcaccccaaa-tgaaactccatacccat-taaacactaactccccatcacccctccctccagcccctggccacctctgatctgctttctgtctgtatgaatttgcctattccagagaggttttgtgtaagtggaagcatgcaatatttgtcctttggtgtctggcttctttcacttagcataacgttttt-gagactcatcgatgttttagcatgcgtcagaccttcattcc-tttttatgggtgaatagtatccc-tgatacagacaggataca-tt----t---tgttcatctgttcctctgttgatggatgcttgggtcatttccaccttttggttattgtga-tagttt-gctgtgaacattggtgtacaagaatttattttagagtccctgttttttagttctttt-gggtatatacctaggagtggaattgttgattcatataatagctctatatttaactttttgaagaatcCCTGATTTCCTTTCTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4304932 570 + 7922563 ---ATTAAA-ATTTT--CAAAGTC-A-----ttttttcttgtcacaaaatatatacagc--aaaattttccatgttaaccatttttaagtgtacat---ttggcactaattatatttgtaacattgtgccatcatcaccactatctatttccaagact-atttattcatctcagactgaagctctgttccc----------------------------------agcccttggtcacctctactctgctttctgtctttatgaatttgccta--ctggagaag-tgcgcagaagtggaatcatgcagggtgtggccttttgtgtctggcttctctcacttagcatcttagtttt-gaggctcatc-atcttgtagcctgcgtcagtgcttcgtttt--ctgtacagctgtgcggtgttccattgtgtggatggaccaca-tt----tctgtgttcactca----tctgtttatagactctcaggtcatttctaccttttggccactgtga-aa-----------agtgctgctgt--aagaatctgctt--gagttccta-ttttcagttctttg-gggtatagacctaggagtggaattgttgggtcatctggtaattctttatgtaatttcttgaggaactgctgttttccTT---- i otoGar3.GL873618 C 0 I 7 s mm10.chr5 124810715 595 + 151834684 CAAATTAAG-TTTTTGGTGAAATC-A-----Ctttttgcttaaggaaaatatgtctactgtaaactttccctttctgtccatcttaaaa-gtactc---gaagcaccgattacattcagaatgttaggtaatcattacctccatctgtttctagaac--tttccattctcctcaactgaagctctgtacccatctagacactgactc-------ttccctcccccagaccctggatacctctaacctgcttcttgtctctctgaaacttccctgtgtctatgtatctcatgtaaggggacccatgcacattgtatcttt--gtgcctagcttct-tctttttgtaaagtgtttctgggggctcacttagaatgtagc-----tccacatttgatcctttttttgtggctgaatagtactccactgtatgggcatgccaca-ctgttac---tgctcacct---------cagatagactct--ggtcttttc----tcctgaccactctg------ct-gctgtaaacattggagatcacaggccttttg--gaggctcta-tgtctggttcttcc-cgccacacttctgagggtggaattcttgagt----ttgtgggtcagtatttcactttctgggga---CTTGTTCTTTTTTTTT i mm10.chr5 C 0 I 116 s canFam3.chr26 33159027 586 - 38964690 ---ATTAAACAGTTT--TAATACC-ACTTTTttttgtattgtggtaaaacatctataacataaaatttgccattttaaccattttgaggagtgaagttagtggcattaggtacattctta---ttgtgcagctgccagcaccatccagctccagacctccttccatcttgtaaaaccagagctgc-tccccat-gaagcacgaacctcccattcctcccattccagtcccccaggaacctctcatctactttctgtct--ctgaattgccctgttccagagactttgtgtg-aagtctagtcatgtaacatttgtcctttcgtgcgtggcttcttatactcagcatg----tctc-aaggctcatccacattgtgtcatgcggcagagtttcctttc--------------------ttca-ttgaatggatggaccaca-tc--------tgtttatctggtcatttgttggtggacacacaggtcacttcca-gttttggctgttgtgagtagtgtggctgtgtgcattggcccgcaggagtctgctt--gagtcca---ttttcaggtctttgtgggtctgcacctgggagcagaattgttgggttgtacaggaattccgtatctgactctttgggaa------------------- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838585 11 - 1116856 I a score=1128052.000000 s hg38.chr12_KI270834v1_alt 70924 114 + 119498 AACAAGCATggctgggtgcggtgagtcacgcctgtaatcccagcactttgtggggctgaggtggaccgattgccttagctcaggagttaagaccagcctgggcaacatgggtga s panTro5.chr12 127356984 114 + 137163284 AAGAAGCATggccgggtgcggtgactcacgcctgtaatcccagcactttgtggggctgaggtggaccgatcgctttagctcaggagttgagaccagcctgggcaacatgggtga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708023 114 + 135337776 AAGAAGCATggccgggtgcggtgactcacgcctgtaatcccagcactttgtggggctgaggtggaccgatcgctttagctcaggagttgagaccagcctgggcaacatgggtga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221143 114 - 8369578 AAGAAGCATggccaggtgcggtgactcacgcctgtaatcccagcactttgtggggctgaggtggaccgatcgctttagctcaggagttgagaccagcctgggcaacatgggtga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97868630 114 + 106955855 AAGAAGCATggccaggtgtggtgactcacgcctgtaatcccagcactttgtggggctgaggtggaccgatcgctttagctcaggagttgagaccagcctgggcaacaaagGCGA i nomLeu3.chr10 C 0 M 11154 s rheMac8.chr11 123994630 111 + 133663169 ---AAGCATggccgggtgcggtgactcacacctgtaatcccagcactttgtggggctgaggtgggccgatcgctttagctcaggagttgagaccagcctgggcaacatgggtga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128242731 111 + 137757926 ---AAGCATggccgggtgcggtgactcacacctgtaatcccagcactttgtggggctgaggtgggccgatcgctttagctcaggagttgagaccagcctgggcaacatgggtga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10641323 111 - 16319837 ---AAGCATggccgggtgcggtgactcacacctgtaatcccagcactttgtggggctgaggtgggccgatcgctttagctcaggagttgagaccagcctgggcaacatgggtga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265044 114 + 20526591 AAGAAGCATggccgggtgcggtgactcacacccgtaatcccagcactttgtggggctgaggtgggccgatcgctttagctcaggagttgaaaccagtctgggcaacatgggtga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119236839 114 + 128539186 AAGAAGCATggccgggtgcggtgactcacacctgtaatcccagcactctgtggggctgaggtgggcttatcgctttagctcaggagttgagaccagcctgggcaacatgggtga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 573358 114 + 6255621 AAGAAGCATggccgggtgcggtgactcacacccgtaatcccagcactttgtggggctgaggtgggccgatcgctttagctcaggagttgaaaccagtctgggcaatatgggtga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4614261 114 - 8658521 AAGAAACATggctgggtgcgatgactcacacctgtaatcccagcactttgtggggctgaggtgggccgatcgctttagctcaggagttgagaccagcctgggcaacttgggtga i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114813808 114 + 124281992 AAGAAGCATggctgggtgcagtgactcacgtctccagtcccagcactttgtggggccgaggtggaccgattgctttagctcaggagttgagaccaacctgggcaacatgggtga i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 457986 114 - 9212255 AAGAAGCATggccgggtgcagtgactcatgtctccagtcccagcactttgtggggccgaggtggaccgattgctttagctcaggagttgagaccaacctgggcaacataggtga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2872658 114 + 4466143 AAGAAGCATggccgggtgcagtgactcacgcctccagtcccagcactttgtggggctgaggtggaccgattgctttagctcaggagttgagaccagcctgggcaacatgggtga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1579354 114 + 5364348 AAGAAGCATggcctggtgcagtgactcacggctccaatcccagcactttgtggggccgaggtggaccgattgctttagctcgggagttgagaccaacctgggcaacatgggtga i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33159613 23 - 38964690 ---------------------------------------cctgctcttt----------------cctgttgtctaag------------------------------------ i canFam3.chr26 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124811310 116 + 151834684 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838585 11 - 1116856 I e otoGar3.GL873618 4305502 7 + 7922563 I a score=316350.000000 s hg38.chr12_KI270834v1_alt 71038 42 + 119498 aacctcacctctacaaaataatacaaaaaattacccaggcat s panTro5.chr12 127357098 42 + 137163284 aacctcacctctacaaaatagtacaaaaaattacccaggcat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708137 42 + 135337776 aacctcacctctacaaaatagtacaaaaaattacccaggaat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221257 42 - 8369578 aacctcacctctacaaaataatacaaaaaattacccaggcat i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123994741 42 + 133663169 aaccttgcctctacaaaataatacaaaaaattacccaggcat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128242842 42 + 137757926 aaccttgcctctacaaaataatacaaaaaattacccaggcat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10641434 41 - 16319837 aaccttgcctctac-agataatacaaaaaattacccaggcat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265158 42 + 20526591 aaccttgcctctacaaaataatacaaaaaattacccaggcat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119236953 42 + 128539186 aacctcgcctctacaaaataatacaaaaaattacccaggcat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 573472 42 + 6255621 aaccttgcctctacaaaataatacaaaaaattacccaggcat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4614375 42 - 8658521 aacctcgcccctacaaaataatacaaaaaattacccaggctt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114813922 39 + 124281992 aacctcatctctacaaaataatacaaataattatttgta--- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 458100 42 - 9212255 aatctcgtccctacaaaataatacaaaaaattagctgggcat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2872772 42 + 4466143 aacctcgttcctacaaaataatagaaaaaattagccgggcat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1579468 42 + 5364348 aaccttgtctctacaaaataatacaaaaaattagccgagcat i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33159636 6 - 38964690 ------------------------------------aggCAT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124811310 116 + 151834684 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838585 11 - 1116856 I e otoGar3.GL873618 4305502 7 + 7922563 I e nomLeu3.chr10 97868744 11154 + 106955855 M a score=1137517.000000 s hg38.chr12_KI270834v1_alt 71080 137 + 119498 ggtggcccat-cctgtagtcccagctacttgggaggctgaggtgggaggatcacctgtgcccaggagatggaggctgcagtgagccatgatcacgccactgcactccagcctgggcaacagagtgaga-ccctgtgtcg s panTro5.chr12 127357140 137 + 137163284 ggtggcccat-cctgtagtcccagctacttgggaggctgaggtgggaggatcacctgtgcccaggagatggaggctgcagtgagccatgatcacgccactgcactccagcctgggcaacagaatgaga-ccctgtgttg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708179 137 + 135337776 ggtggcccat-cctgtagtcccagctacttgggaggctgaggtgggaggatcacctgtgcccaggagatggaggctgcagtgagccatgatcacgccactgcactccagcctgggcaacagaatgaga-ccctgtgttg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221299 137 - 8369578 ggtggcccat-cctgtagtcccagctacttgggaggctgaggtgggaggatcacctgtgcccaggagatggaggctgcagtgagccatgatcacgccactgcactccagcctgggcaacagagtgaga-ccctgtgtcg i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123994783 138 + 133663169 ggtggcccatgcctgtagtcccagctacttgggaggctgaggtgggaggatcacctctgtccgggagatggaggctgcagtgagccatgatcacgccactgcactccagcctgggcaagagagtgaga-gcctgtgtca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128242884 138 + 137757926 ggtggcccatgcctgtagtcccagctacttgggaggctgaggtgggaggatcacctctgtccgggagatggaggctgcagtgagccatgatcacgccactgcactccagcctgggcaagagagtgaga-gcctgtgtca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10641475 131 - 16319837 ggtggcccaatgctgtagtcccagctac-tgggaggctgaggtgggaggatcacctctgtccggg-gatggaggctgcagtgagccatgatcac------gcactccagcctgggcaagagagtgagaggcctgtgtca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265200 138 + 20526591 ggtggcccacgcctgtagtcccagctacttgggaggctgaggtgggaggatcacctctgtccgggagatggaggctgcagtgagccatgatcacgccactgcactctagcctgggcaagagagtgaga-gcctgtgtca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119236995 138 + 128539186 ggtggcccacgcctgtagtcccagctccttgggaggctgaggtgggaggatcacctgtgtctgggaggtggaggctgcagtgagctgagatccggccactgcactccagcctgggcgacacagtgaga-gcctgtgtca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 573514 138 + 6255621 ggtggcccacgcctgtagtcccagctacttgggaggctgaggtgggaggatcacctctgtccgggagatggaggctgcagtgagccgtgatcacgccactgcactctagcctgggcaagagagtgaga-gcctgtgtca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4614417 138 - 8658521 ggtggcccacacctgtagtcccagctacttgggaggctgaagtgggaggatcacctgtgtctgggagatggaggctgcagtgagccatgatcacgccattgcactccagcctgggcaacagagtgaga-gcctgtgtca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114813961 122 + 124281992 ----------------agtcccagctacttgggaggctgaggtgggaggatcacctgtgcccggtagatggaggctgcagtgagccatgatcgtgccaccacactccttcctgggcaacagagtgaga-ccctgtgtca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 458142 138 - 9212255 ggtggcccacgcctgtagtcccagctacttgggaggctgaggtgggaggatcacctgtgcccggtagatggagactgcagtgagccatgatcaccccaccacactccttcctgggcaacagagcgaga-ccctgtgtca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2872814 138 + 4466143 ggtggcccacgcctgtagtcccagctacttgggaggctgaggtgggaggatcacctgtgcccggtagatggaggctgcagtgagccatgatcatgccaccacactccttcctgggcaacagagcgaga-ccctgtgtca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1579510 135 + 5364348 ggtggcccacgcct---gtcccagctacttgggaggctgaggtgggaggatcacctgtgcccagtagatggaggctgcagtgagccatgatcacaccaccacactccttcctgggcaacagagcgaga-ccctgtgtca i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124811310 116 + 151834684 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838585 11 - 1116856 I e canFam3.chr26 33159642 0 - 38964690 C e otoGar3.GL873618 4305502 7 + 7922563 I e nomLeu3.chr10 97868744 11154 + 106955855 M a score=78510.000000 s hg38.chr12_KI270834v1_alt 71217 19 + 119498 aaaaagaa----------aaagaaagaaa------- s panTro5.chr12 127357277 19 + 137163284 aaaaagta----------aaagaaagaaa------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708316 19 + 135337776 aaaaagta----------aaagaaagaaa------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221436 19 - 8369578 aaaaagaa----------aaagaaagaaa------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97879913 19 + 106955855 aaaaaaaa----------aaaaaagaaaa------- i nomLeu3.chr10 M 11154 C 0 s rheMac8.chr11 123994921 19 + 133663169 aaaaaaaa----------aaaaaaaaaaa------- i rheMac8.chr11 C 0 I 51 s macFas5.chr11 128243022 19 + 137757926 aaaaaaaa----------aaaaaaaaaaa------- i macFas5.chr11 C 0 I 51 s macNem1.NW_012010578v1 10641606 19 - 16319837 aaaaaaaa----------aaaaaaaaaaa------- i macNem1.NW_012010578v1 C 0 I 45 s cerAty1.NW_012001186v1 12265338 15 + 20526591 aaaaaaaa----------aaaaaga----------- i cerAty1.NW_012001186v1 C 0 I 38 s chlSab2.chr11 119237133 19 + 128539186 aaaaaaaa----------aaaaaaaaaaa------- i chlSab2.chr11 C 0 I 43 s manLeu1.NW_012103587v1 573652 19 + 6255621 aaaaaaaa----------aaaaaaaaaaa------- i manLeu1.NW_012103587v1 C 0 I 5594 s colAng1.NW_012116043v1 4614555 19 - 8658521 aaaaaaaa----------aaaaaaaaaaa------- i colAng1.NW_012116043v1 C 0 I 55 s calJac3.chr9 114814083 14 + 124281992 ---g---------------aaaaagcaaa----aCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 458280 19 - 9212255 ---gaaaa----------aaaaaaacaaa----CCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2872952 23 + 4466143 ---gaaaa----------aaaaaaaaaaaaaCCACC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1579645 29 + 5364348 ---gaaaaaaaaaaaaacaagaaaacaaa----aCC i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124811310 116 + 151834684 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838585 11 - 1116856 I e canFam3.chr26 33159642 0 - 38964690 C e otoGar3.GL873618 4305502 7 + 7922563 I a score=34413.000000 s hg38.chr12_KI270834v1_alt 71236 3 + 119498 aCA s panTro5.chr12 127357296 3 + 137163284 aCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708335 3 + 135337776 aCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221455 3 - 8369578 aCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97879932 3 + 106955855 aCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123994991 3 + 133663169 ACA i rheMac8.chr11 I 51 C 0 s macFas5.chr11 128243092 3 + 137757926 ACA i macFas5.chr11 I 51 C 0 s macNem1.NW_012010578v1 10641670 3 - 16319837 ACA i macNem1.NW_012010578v1 I 45 C 0 s cerAty1.NW_012001186v1 12265391 3 + 20526591 ACA i cerAty1.NW_012001186v1 I 38 C 0 s chlSab2.chr11 119237195 3 + 128539186 ACA i chlSab2.chr11 I 43 C 0 s manLeu1.NW_012103587v1 579265 3 + 6255621 ACA i manLeu1.NW_012103587v1 I 5594 C 0 s colAng1.NW_012116043v1 4614629 3 - 8658521 ACA i colAng1.NW_012116043v1 I 55 C 0 s calJac3.chr9 114814097 3 + 124281992 ACA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 458299 3 - 9212255 ACA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2872975 3 + 4466143 ATA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1579674 3 + 5364348 ACA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4305509 3 + 7922563 ATA i otoGar3.GL873618 I 7 C 0 e micMur3.chr21 9468411 594 - 31815103 I e mm10.chr5 124811310 116 + 151834684 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I e dasNov3.JH568189 838585 11 - 1116856 I e canFam3.chr26 33159642 0 - 38964690 C a score=85079.000000 s hg38.chr12_KI270834v1_alt 71239 6 + 119498 TTTTTT s panTro5.chr12 127357299 6 + 137163284 TTTTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708338 6 + 135337776 TTTTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221458 6 - 8369578 TTTTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97879935 6 + 106955855 TTTTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123994994 6 + 133663169 TTTTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243095 6 + 137757926 TTTTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10641673 6 - 16319837 TTTTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265394 6 + 20526591 TTTTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237198 6 + 128539186 TTTTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579268 6 + 6255621 TTTTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4614632 6 - 8658521 TTTTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114814100 6 + 124281992 GTTTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 458302 6 - 9212255 TTTTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2872978 6 + 4466143 TTTTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1579677 6 + 5364348 TTTTTA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4305512 6 + 7922563 TTTTTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124811426 6 + 151834684 TTCTCT i mm10.chr5 I 116 C 0 s canFam3.chr26 33159642 6 - 38964690 TTTTCC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838596 6 - 1116856 TTTTCT i dasNov3.JH568189 I 11 C 0 e micMur3.chr21 9468411 594 - 31815103 I e proCoq1.NW_012154285v1 6719443 1226 - 9870158 I a score=3806739.000000 s hg38.chr12_KI270834v1_alt 71245 220 + 119498 ATTCCTTCCTCTTCAGGGTAT--AATCCAATGATCCCGGCAGAAAATATAGAAAATGTGGTGAAGCATGTTGTCTTGGTTCACCAATCCGTGGACCACTACAGCCAACAGTTTCTACAGAAATTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTTGATTTTATTAACACCTATTCAAAATTGCTGGATGAGAAAACTCAGTGTAATATAGGTAAGC s panTro5.chr12 127357305 220 + 137163284 ATTCCTTCCTCTTCAGGGTAT--AATCCAATGATCCCGGCAGAAAATATAGAAAATGTGGTGAAGCATGTTGTCTTGGTTCACCAATCCGTGGGCCACTACAGCAAACAGTTTCTACAGAAATTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTTGATTTTATTAACACCTATTCAAAATTGCTGGATGAGAAAACTCAGTATAATATAGGTAAGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708344 220 + 135337776 ATTCCTTCCTCTTCAGGGTAT--AATCCAATGATCCCGGCAGAAAATATAGAAAATGTGGTGAAGCATGTTGTCTTGGTTCACCAATCCGTGGGCCACTACAGCAAACAGTTTCTACAGAAATTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTTGATTTTATTAACACCTATTCAAAATTGCTGGATGAGAAAACTCAGTATAATATAGGTAAGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221464 220 - 8369578 ATTCCTTCCTCTTCAGGGTAT--AATCCAATGATCCCGGCAGAAAATATAGAAAATGTGATGAAGCATGTTGTCTTGGTTCACCAATCCGTGGGCCACTACAGCAAACAGTTTCTACAGAAATTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTTGATTTTATTAACACCTATTCAAAATTGCTGGATGAGAAAACTCAGTATAATATAGGTAAGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97879941 220 + 106955855 ATTCCTTCCTCTTCAGGGTAT--AATCCGATGATCCCGGCAGAAAATATAGAAAATGTGGTGAAGCATGTTGTTTTGGTTCACGAATCCGTGGGCCACTACAGCAAACAGTTTCTACAGAAATTGAGGCGCAGCAATTATGTCACTCCCAAGAACTACCTTGATTTTATTAACACCTATTCAAAATTGCTGGATGAGAAAACTCAGTATAATATAGGTAAGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995000 220 + 133663169 ATTCCTTCCTCTTCAGGGCGT--AATCCAATGATCCCGGCAGAAAATATAGAAAATGTGGTAAAGCATGTTGTTTTGGTTCACCAGTCCGTGGGTCACTACAGCAAACAGTTTCTACAGAAATTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTTGATTTTATTCACACCTATTCAAAATTGCTGGATGAGAAAACTCAGTATAATATAGGTAAGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243101 220 + 137757926 ATTCCTTCCTCTTCAGGGCGT--AATCCAATGATCCCGGCAGAAAATATAGAAAATGTGGTAAAGCATGTTGTTTTGGTTCACCAGTCCGTGGGTCACTACAGCAAACAGTTTCTACAGAAATTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTTGATTTTATTCACACCTATTCAAAATTGCTGGATGAGAAAACTCAGTATAATATAGGTAAGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10641679 222 - 16319837 ATTCCTTCCTCTTCAGGTCGTACAATCCAATGATCCCGGCAGAAAATATAGAAAATGTGGTAAAGCATGTTGTTTTGGTTCACCAGTCCGTGGGTCACTACAGCAAACAGTTTCTACAGAAATTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTTGATTTTATTCACACCTATTCAAAATTGCTGGATGAGAAAACTCAGTATAATATAGGTAAGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265400 220 + 20526591 ATTCCTTCCTCTTCAGGGCGT--AATCCAATGATCCCGGCAGAAAATATAGAAAATGTGGTAAAGCATGTTGTTTTGGTTCACCAGTCCGTGGGTCACTACAGCAAACAGTTTCTACAGAAATTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTTGATTTTATTCACACCTATTCAAAATTGCTGGATGAGAAAACTCAGTATAATATAGGTGAGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237204 220 + 128539186 ATTCCTTCCTCTTCAGGGTGT--AATCCAATGATCCCGGCAGAAAATATAGAAAATGTGGTAAAGCATGTTGTTTTGGTTCACCAGTCCGTGGGTCACTACAGCAAACAGTTTCTACAGAAATTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTTGATTTTATTCACACCTATTCGAAATTGCTGGATGAGAAAACGCAGTATAATATAGGTAAGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579274 220 + 6255621 ATTCCTTCCTCTTCAGGGCGT--AATCCAATGATCCCGGCAGAAAATATAGAAAATGTGGTAAAGCATGTTGTTTTGGTTCACCAGTCCGTGGGTCACTACAGCAAACAGTTTCTACAGAAATTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTTGATTTTATTCACACCTATTCAAAATTGCTGGATGAGAAAACTCAGTATAATATAGGTGAGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4614638 220 - 8658521 ATTCCTTCCTCTTCAGGGTGT--AATCCAATGATCCCAGCAGAAAATATAGAAAATGTGGTAAAGCATGTTGTTTTGGTTCACCAGTCCGTGGGCCACTACAGCAAACAGTTTCTACAGAAATTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTTGATTTCATTCACACCTATTCAAAATTGCTGGATGAGAAAACTCAGTATAATATAGGTAAGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114814106 219 + 124281992 ATTCCTTCTTTTCCAGGGTAT--AATCCAATGATCCCAGCAGAAAACCTAGAGAATGTGGTGAAGCATGTTGTTTTGGTCCACCAGTCCGTGGGGCGCTACAGCCAACAGTTTCTGCAGAAGCTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTGGAATTTAATAACACCTATTCAAAACTGCTGGATGAGAAAACTCAGTATAA-ATAGGTAAGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 458308 220 - 9212255 ATTCCTTCTTTTTCAGGGTAT--AACCCAATGATCCCAGCAGAAAACATAGAGAATGTGGTGAAGCACGTTGTTCTGGTCCACGAGTCCGTGGGGCACTACAGCCAGCTGTTTCTGCAGAAGCTGAGGCGCAGCAACTACGTGACTCCCAAGAACTACCTGGATTTTATTAACACCTATTCAAAACTGCTGGATGAGAAAACTCAGTATAACATAGGTCAGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2872984 220 + 4466143 ATTCCGTCTTTTTCAGGGTAT--AATCCAATGATCCCAGCAGAAAACATAGAGAATGTGGTGAAGCATGTTGTGTTGGTCCACCAGTCCGTGGGGCACTACAGCCAACTGTTTCTGCAGAAGTTGAGGCGCAGCAACTACGTCACTCCCAAGAACTACCTGGATTTTATTAACACCTATTCAAAACTGCTGGATGAGAAAACTCAGTATAACATAGGTAAGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1579683 220 + 5364348 ATTCCTTCTTTTTCAGGGTAT--AATCCAATGATCCCAGCAGAAAACATAGAGAACGTGGTGAAGCACGCCGTCTTGGTCCACCAGTCCGTGGAGCACTACAGCCAGCTGTTCCTGCAGAAGTGGAGGCGCAGCAACTACGTCACTCCCAAGAACTACCTGGACTTTATTAACACCTATTCAAAACTGCTGGATGAGAAAACTCAGTATAATATGGGTAAGA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9469005 220 - 31815103 attccTTCCTCTTCAGGGGAT--AACCAGATGATTCCGCCGGAAAACACGGAAGACCTGGTAGAGCACGTTGTCCTGGTTCACGAATCCGTGGGGCAGTTCAGCAAACAATTCCTGCAGAAACTGAGACGCAGCAACTACGTGACTCCCAAGAACTACCTCGATTTTATTAACACCTACTCGAAATTACTGGATGAGAAAACTCAGTATAATATAGGTAAGA i micMur3.chr21 I 594 C 0 s proCoq1.NW_012154285v1 6720669 220 - 9870158 ATTCCTTCCTCTTCAGGGGAT--AACCCGCTGATCCCGCTGGAAAACATGGAGGATCTGGTGGAGCATGTCGCTCTGGTTCACGAATCCGTGGGCCAGTTCAGCAAACGATTTCTGCAGAAACTGAGACGCAGCAACTACGTGACTCCCAAGAACTACCTCGATTTTATTAACACCTACTCAAAACTGCTGGATGAGAAAACTCAGTATAACATAGGTGAGA i proCoq1.NW_012154285v1 I 1226 C 0 s otoGar3.GL873618 4305518 220 + 7922563 GTTCCTTCCTCTTCAGGGGAT--AACTTACTGATCCCACCAGAAAACATGGAAGATCTGGTAGAACATGTCGTTTTGGTTCACGAGTCTGTAGGGCAATTCAGCAAACAATTTCTGCAGAAACTCAGACGCAGCAACTACGTAACTCCCAAGAACTACCTTGATTTTATTAATACCTATGCAAAATTACTGGATGAAAAAACTCAGTATAACATAGGTAAGA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124811432 220 + 151834684 GTGCCTTCCACTGCAGGCGAT--AACTCCATGATTCCCGATGAGAAACTTGAGGAGCTTGTGGAGCACGTGGTCATGGTCCACCAGTCGGTGGGCGAGTTCAGCAAGCAGTTCCAGCAGAAGCTGAGGCGGAGCAACTATGTGACGCCCAAGAACTACCTAGACTTCATTAATACCTACTCAAAACTACTAGATGAGAAAACCCAGTACAACATAGGTGAGC i mm10.chr5 C 0 I 789 s canFam3.chr26 33159648 220 - 38964690 CATCCTTTCTCTTCAGGGACA--AATCCGATGATTCCGATGGAAAACATAGACAGTGTGGTAGAGCATGTTGTTTTGGTCCATGAATCCGTGGGTGAATTCAGCAAACAATTTCTACAGAAATTGAGGCGTAGCAACTATGTAACACCCAAAAACTACCTTGATTTTATTAACACATATTCAAAATTGCTGGATGAGAAAACCCAGTATAACACGGGTAAGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838602 218 - 1116856 ATTCCTTC-TCTCCAGGGAAT--AATACAATGATCCCATTGGAGCATATAGAAGATCTGGTACAACATGTTGTTATGGTCCATAAATCTGTGGGTGATTTCAGCAAACAATTTCTACAGAAATTGAGGCGCAGCAACTACGTCACTCCCAAGAATTATCTTGATTTTATTAACACGTATTCAAAATTACTGGATGAAAAAACTCAGTATAATATAGGTAAG- i dasNov3.JH568189 C 0 C 0 a score=159977.000000 s hg38.chr12_KI270834v1_alt 71465 12 + 119498 CTTGGGGATGGG s panTro5.chr12 127357525 12 + 137163284 CTTGGGGATGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708564 12 + 135337776 CTTGGGGATGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221684 11 - 8369578 CTTGGGGAT-GG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880161 12 + 106955855 CTTGGGGATGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995220 12 + 133663169 CTGGGGGATGGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243321 12 + 137757926 CTGGGGGATGGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10641901 12 - 16319837 CTGGGGGATGGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265620 12 + 20526591 CTGGGGGATGCG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237424 11 + 128539186 CT-GGGGATGGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579494 12 + 6255621 CTGGGGGATGGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4614858 12 - 8658521 CTGGGGGATGGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114814325 12 + 124281992 CTTGGGGATGGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 458528 12 - 9212255 CTTGGGGACGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2873204 12 + 4466143 CTTGGGGACCGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1579903 12 + 5364348 CTTGGGGACAGG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9469225 12 - 31815103 CTTGGGGGTGGG i micMur3.chr21 C 0 I 458 s proCoq1.NW_012154285v1 6720889 12 - 9870158 CCTGGGGGTGGG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4305738 12 + 7922563 CTTGGGGATGGG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33159868 12 - 38964690 CATGGGAATGGG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838820 12 - 1116856 GTTGGGTACGGG i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124811652 789 + 151834684 I a score=217625.000000 s hg38.chr12_KI270834v1_alt 71477 19 + 119498 GTGGTTGACAAAAGTCATT s panTro5.chr12 127357537 19 + 137163284 GTGGTTGACAAAAGTCATT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708576 19 + 135337776 GTGGTTGACAAAAGTCATT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221695 19 - 8369578 GTGGTTGACAAAAGTCATT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880173 19 + 106955855 GTGGTTGACAAAAGTCATT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995232 19 + 133663169 GTGGTTGACAGAGGTCATT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243333 19 + 137757926 GTGGTTGACAGAGGTCATT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10641913 19 - 16319837 GTGGTTGACAGAGGTCATT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265632 19 + 20526591 GTGGTTGACAGAGGTCATT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237435 19 + 128539186 GTGGTTGACAGAGGTCATT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579506 19 + 6255621 GTGGTTGACAGAGGTCATT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4614870 19 - 8658521 GTGGTTGACAGAGGTCATT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114814337 19 + 124281992 GTGGTTGGCAGATATCATT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 458540 19 - 9212255 GTGGTTGGCAGAAATCGTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2873216 19 + 4466143 GTAGTTGGCAGAAATCATT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1579915 19 + 5364348 GTGGTTGGCAGAAATCATT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6720901 19 - 9870158 ACGGTTAACAGAGGTCATT i proCoq1.NW_012154285v1 C 0 I 62 s otoGar3.GL873618 4305750 16 + 7922563 ACAGTTAAGAGAAATC--- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33159880 11 - 38964690 ATGGTGAACAA-------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838832 19 - 1116856 ATGGCTAACAGAAATCTTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469237 458 - 31815103 I e mm10.chr5 124811652 789 + 151834684 I a score=685367.000000 s hg38.chr12_KI270834v1_alt 71496 64 + 119498 ATTATTTATGGGTAAGGATTCGAGCGCTGATCTTTTCT----------------TTAGTAAGATGGGGCA-TCTTCAGTAT s panTro5.chr12 127357556 64 + 137163284 ATTATTTATGGGTAAGGATTCGAGCGCTGATCTTTTCT----------------TTAGTAAGATCGGGCA-TCTTCAGTAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708595 64 + 135337776 ATTATTTATGGGTAAGGATTCGAGCGCTGATCTTTTCT----------------TTAGTAAGATCGGGCA-TCTTCAGTAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221714 64 - 8369578 ATTATTTATGGGTAAGGATTCAAGCGCTGATCTTTTCT----------------TTAGTAAGATCGGGCA-TCTTCAGTAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880192 64 + 106955855 ATTATTTATGGGTAAGGATTCGAGCGCTGATCTTTTCT----------------TTAGCAAGATGGGGCA-TCTTCAGTAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995251 63 + 133663169 CTTATTTAT-GGTAAGGATTCGAACGCTGATCTTTTCT----------------TTAGTAAGATCAGCCA-TCTTCAGTAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243352 63 + 137757926 CTTATTTAT-GGTAAGGATTCGAACGCTGATCTTTTCT----------------TTAGTAAGATCAGCCA-TCTTCAGTAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10641932 63 - 16319837 CTTATTTAT-GGTAAGGATTCGAACGCTGATCTTTTCT----------------TTAGTAAGATCAGCCA-CCTTCAGTAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265651 63 + 20526591 CTTATTTAT-GGTAAAGATTCGAACGCTGATCTTTTCT----------------TTAGTAAGATCAGCCA-TCTTCAGTAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237454 64 + 128539186 CTTATTTATGGGTAAGGATTGGAACGCTGATCTTTTCT----------------TTAGTAAGATCAGCCA-TCTTCAGGAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579525 63 + 6255621 CTTATTTAT-GGTAAGGATTCGAACGCTGATCTTTTCT----------------TTAGTAAGATCAGCCA-TCTTCAGTAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4614889 64 - 8658521 CTTATTTATGGGTGAGGATTCGAACGCTGATCTTTTCT----------------TTAGTAAGATCAGCCA-TCTTCAGTAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114814356 64 + 124281992 ATTATTTATGGGCAAGGATTCGAGCACTGATCTTTCTT----------------TTAGTAAGATCGGGCA-TTTTCAGTAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 458559 65 - 9212255 ATTATTTATGGGTAAGGATTCGAGCGCTGATCTTTCTT----------------TTAGTAAGATCGGGCATTTTTCAGTAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2873235 64 + 4466143 ATTATTTATGGGTAAGGATTCGAGCGCTGATCTTTCTT----------------TTAGTAAGATTGGGCA-TTTTCAGTAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1579934 64 + 5364348 ATTATTTATGGGTAAGGATTCGAGCGCTGATCTTTCTT----------------TTAGTAAGATTGGGCA-TTTTCAGTAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4305766 78 + 7922563 ATTATTTACGAGTAAGCCTTAAAGCACCTGTCATTTTT-GAGGCAGATATTTC-TTAGCAAGATCAGGCA-GGTTCATGAT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33159891 69 - 38964690 -----------GTGAGGATCCAAGGGCTGACCTTCTCTTTAAGTAGGTGTTTTATTAGCAAGACCAGACA-CACTCCAGAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838851 77 - 1116856 ATTCCTTACAAGTAAGAATTGAAGTGCTCATCTTTTTT--AAGTAGGTGTTCC-TTAGCAAGATCAGGCA-TAGTCAAGAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469237 458 - 31815103 I e mm10.chr5 124811652 789 + 151834684 I e proCoq1.NW_012154285v1 6720920 62 - 9870158 I a score=811563.000000 s hg38.chr12_KI270834v1_alt 71560 65 + 119498 TGAGGCCAAACGAAGCACATCTTGGATTTTGTGTCTTGGAGCGATTCTTTCATGTGGGCAGGACC s panTro5.chr12 127357620 65 + 137163284 TGAGGCCAAACGAAGCACATCTTGGATTTTGCGTCTTGGAGTGATTCTTTCATGTGGGCAGGACC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708659 65 + 135337776 TGAGGCCAAACGAAGCACATCTTGGATTTTGCGTCTTGGAGTGATTCTTTCATGTGGGCAGGACC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221778 64 - 8369578 TGAGGCCAAACGAAGCACATCTTGGATTTTGCGTCTTGGAGCGATTCTTTCATGTGGGCAGGA-C i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880256 65 + 106955855 TGAGGCCAAGCGAAGCACATCTTGGATTTTGCATCTTGGAGCAGTTCTTTCATGTGGGTAGGACC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995314 65 + 133663169 TGAGGCCAAGCGAAGCACATCTCGGATTTTGCGTCTTGGAGCAATTCTTTCATGTGGGTAGGACC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243415 65 + 137757926 TGAGGCCAAGCGAAGCACATCTCGGATTTTGCGTCTTGGAGCAATTCTTTCATGTGGGTAGGACC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10641995 65 - 16319837 TGAAGCCAAGCGAAGCACATCTCGGATTTTGCGTCTTGGAGCAATTCTTTCATGTGGGTAGGACC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265714 65 + 20526591 TGAGGCCAAGCGAAGCACATCTCGGATTTTGCGTCTTGGAGCAATTCTTTCATGTGGGTAGGACC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237518 65 + 128539186 TGAGGCCAAGCGAAGCACATCTTGGATTTTGTGTCTTGGAGCAATTCTTTCATGTGGGTGGGACC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579588 65 + 6255621 TGAGGCCAAGCGAAGCACATCTCGAATTTTGCGTCTTGGAACAATTCTTTCATGTGGGTAGGACC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4614953 65 - 8658521 TGAGGCCAAGCGAAGCACATCTTGGATTTTGTGTCTTGGAGCAATTCTTTCATGTGGGTAGAACC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114814420 65 + 124281992 TGAGGCCAAGCAAAGCACGTCTTGGATTTTGCATCTTGGATCAATGCTTCCATGTGGGTAGGACC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 458624 65 - 9212255 TGAGGCCAAGCAAAGCACATCTTGGATTTTGCATCTTAGAGCAATGCTTCCATGTGGGTAGCACC i saiBol1.JH378194 C 0 I 678 s cebCap1.NW_016107484v1 2873299 65 + 4466143 TGAGGCCAAGCAAAGCACATCTTGGATTTTGCATCTTGGAGCAATGCTTCCATGTAGGTAGGACC i cebCap1.NW_016107484v1 C 0 I 315 s aotNan1.NW_018491581v1 1579998 65 + 5364348 TGAGGCCAAGCAAAGCACATCTTGGATTTTGCATCTTGGAGCAATGCTTCCATGTGGGTAGGACC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6720982 65 - 9870158 TGAGGCCAAGCAAGGCACGTTTTGGATTTTGCATTTTGGAGTAATTCTTCCGTGTGGGCAGGGCC i proCoq1.NW_012154285v1 I 62 C 0 s otoGar3.GL873618 4305844 49 + 7922563 TGAGGTCAAGCAAAGCA--------------CATTTTGAAGTAATTCCTCTATGTGGG--GACCC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33159960 65 - 38964690 TGAGACAAAATACTGCATGTTCTGGATATTACATCTTAGAGTGAGTCTTCTGGGTGGGCAGAGGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838928 54 - 1116856 GGAGGCAAAACAGAGTGCATTTTATGTTTTGTA-CATGCAATAATTCTTC--TGTGG-------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469237 458 - 31815103 I e mm10.chr5 124811652 789 + 151834684 I a score=32661.000000 s hg38.chr12_KI270834v1_alt 71625 2 + 119498 CT s panTro5.chr12 127357685 2 + 137163284 CT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708724 2 + 135337776 CT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221842 2 - 8369578 CT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880321 2 + 106955855 CT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995379 2 + 133663169 CT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243480 2 + 137757926 CT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642060 2 - 16319837 CT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265779 2 + 20526591 CT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237583 2 + 128539186 CT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579653 2 + 6255621 CT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615018 2 - 8658521 CT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114814485 2 + 124281992 CT i calJac3.chr9 C 0 I 292 s saiBol1.JH378194 459367 2 - 9212255 cT i saiBol1.JH378194 I 678 C 0 s cebCap1.NW_016107484v1 2873679 2 + 4466143 cT i cebCap1.NW_016107484v1 I 315 C 0 s aotNan1.NW_018491581v1 1580063 2 + 5364348 CT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6721047 2 - 9870158 CT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4305893 2 + 7922563 CT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33160025 2 - 38964690 CT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9469237 458 - 31815103 I e mm10.chr5 124811652 789 + 151834684 I e dasNov3.JH568189 838982 0 - 1116856 C a score=50236.000000 s hg38.chr12_KI270834v1_alt 71627 3 + 119498 GGC s panTro5.chr12 127357687 3 + 137163284 GGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708726 3 + 135337776 GGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221844 3 - 8369578 GGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880323 3 + 106955855 GGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995381 3 + 133663169 GGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243482 3 + 137757926 GGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642062 3 - 16319837 GGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265781 3 + 20526591 GGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237585 3 + 128539186 GGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579655 3 + 6255621 GGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615020 3 - 8658521 GGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114814779 3 + 124281992 GGC i calJac3.chr9 I 292 C 0 s saiBol1.JH378194 459369 3 - 9212255 GGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2873681 3 + 4466143 GGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1580065 3 + 5364348 GGC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6721049 3 - 9870158 GGC i proCoq1.NW_012154285v1 C 0 I 330 s otoGar3.GL873618 4305895 3 + 7922563 GGG i otoGar3.GL873618 C 0 I 1 s canFam3.chr26 33160027 3 - 38964690 GGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838982 3 - 1116856 AGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469237 458 - 31815103 I e mm10.chr5 124811652 789 + 151834684 I a score=141754.000000 s hg38.chr12_KI270834v1_alt 71630 11 + 119498 ATGTCCTTATT s panTro5.chr12 127357690 11 + 137163284 ATGTCCTTATT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708729 11 + 135337776 ATGTCCTTATT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221847 11 - 8369578 ATGTCCTTATT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880326 11 + 106955855 ATGTCCTTATT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995384 11 + 133663169 ATGTCCTTGTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243485 11 + 137757926 ATGTCCTTGTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642065 11 - 16319837 ATGTCCTTGTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265784 11 + 20526591 ATGTCCTTGTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237588 11 + 128539186 ATGTCCTTGTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579658 11 + 6255621 ATGTCCTTGTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615023 11 - 8658521 ATGTCCTTATT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114814782 11 + 124281992 ATGTCCTTATT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 459372 11 - 9212255 ATGTCCTTATT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2873684 11 + 4466143 ATGTCCTTATT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1580068 11 + 5364348 ATATCCttatt i aotNan1.NW_018491581v1 C 0 I 2146 s otoGar3.GL873618 4305899 11 + 7922563 ATGCtcttttt i otoGar3.GL873618 I 1 C 0 s canFam3.chr26 33160030 11 - 38964690 ATGCTCTTCTA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838985 11 - 1116856 GTGTTCTTATT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469237 458 - 31815103 I e mm10.chr5 124811652 789 + 151834684 I e proCoq1.NW_012154285v1 6721052 330 - 9870158 I a score=24208.000000 s hg38.chr12_KI270834v1_alt 71641 2 + 119498 TT s panTro5.chr12 127357701 2 + 137163284 TT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708740 2 + 135337776 TT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221858 2 - 8369578 TT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880337 2 + 106955855 TT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995395 2 + 133663169 TT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243496 2 + 137757926 TT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642076 2 - 16319837 TT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265795 2 + 20526591 TT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237599 2 + 128539186 TT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579669 2 + 6255621 TA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615034 2 - 8658521 TT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114814793 2 + 124281992 TT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 459383 2 - 9212255 TT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2873695 2 + 4466143 TT i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4305910 2 + 7922563 tt i otoGar3.GL873618 C 0 I 257 s canFam3.chr26 33160041 2 - 38964690 TT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838996 2 - 1116856 TT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469237 458 - 31815103 I e mm10.chr5 124811652 789 + 151834684 I e proCoq1.NW_012154285v1 6721052 330 - 9870158 I e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I a score=589623.000000 s hg38.chr12_KI270834v1_alt 71643 57 + 119498 TGTTCTCAGTGTTGAGTCTTA-GACTTTGAAGCTTTACATTTTGA--------------TCACATTAGCAAt- s panTro5.chr12 127357703 57 + 137163284 TGTTCTCAGTGTTGAGTCTTA-GACTTTGAAGCTTTACATTTTCA--------------TCACATTAGCAAt- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708742 57 + 135337776 TGTTCTCAGTGTTGAGTCTTA-GACTTTGAAGCTTTACATTTTCA--------------TCACATTAGCAAt- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221860 57 - 8369578 TGTTCTCAGTGTTGAGTCTTA-GACTTTGAAGCTTTACATTTTCA--------------TCACATTAGCAAt- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880339 57 + 106955855 TATTCTCAGTGTTGAGTCATA-GACTTTGAAGCTTTACATTTTCA--------------TCACATTAGCCAt- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995397 57 + 133663169 TATTCTCAGTGTTGAGTCATA-GACTTTGAAGCTTTACGTTTTCA--------------TCACATTAGCAAT- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243498 57 + 137757926 TATTCTCAGTGTTGAGTCATA-GACTTTGAAGCTTTACGTTTTCA--------------TCACATTAGCAAT- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642078 57 - 16319837 TATTCTCAGTGTTGAGTCATA-GACTTTGAAGCTTTACGTTTTCA--------------TCACATTAGCAAT- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265797 57 + 20526591 TATTCTCAGTGTTGAGTCATA-CACTTTGAAGCTTTACGTTTTCA--------------TCACATTAGCAAT- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237601 57 + 128539186 TATTCTCAGTGTTGAGTCATA-GACTTTGAAGCTTTACGTTTTCA--------------TCACATTAGCAAT- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579671 57 + 6255621 TATTCTCAGTGTTGAGTCATA-GACTTTGAAGCTTTACGTTTTCA--------------TCACATTAGCAAT- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615036 57 - 8658521 TATTCTCAGTGTTGAGTCATA-GACTTTGAAGCTTTACATTTTCA--------------TCACATTAGCAAT- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114814795 57 + 124281992 TGTTCTCAGTGTTGAGTCATA-TACTTTGAAGCTTTACATTTTCA--------------CCACATTAGCAAT- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 459385 57 - 9212255 TGTTCTCAGTGTTGAGCCATA-TACTTTGAAGCTTTACATTTTCA--------------CCACGTTAGCAAT- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2873697 57 + 4466143 TGTCCTCAGTGTTGAGTCATA-TACTTTGAAGCTTTGCATTTTCA--------------CCACATTAGCAAt- i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4306169 57 + 7922563 TATTCTCAGTGTTGGGCCATA-CACTTTGTTGCTCTGCATTTTCA--------------TCTCATTAGAGAT- i otoGar3.GL873618 I 257 T 314 s canFam3.chr26 33160043 44 - 38964690 ---CGTCAGTGTTGGGTCTTG-CACTTTGTAGCTCTACCTCTTCA--------------CTG----------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 838998 70 - 1116856 TATTTTCAGTGTTGGGTCATGTTACATTAGAGATGT---TGTTCAATGGCAGTAATGTGCTATGTTGGCaaat i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469237 458 - 31815103 I e mm10.chr5 124811652 789 + 151834684 I e proCoq1.NW_012154285v1 6721052 330 - 9870158 I e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I a score=71277.000000 s hg38.chr12_KI270834v1_alt 71700 16 + 119498 ttttaaa---------tttta-tttt s panTro5.chr12 127357760 16 + 137163284 ttttaaa---------tttta-tttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708799 16 + 135337776 ttttaaa---------tttta-tttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221917 16 - 8369578 ttttaaa---------tttta-tttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880396 10 + 106955855 t---------------tttta-tttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995454 16 + 133663169 GTTTCCA---------ttttg-tttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243555 16 + 137757926 GTTTCCA---------ttttg-tttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642135 16 - 16319837 GTTTCCA---------ttttg-tttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265854 16 + 20526591 GTTTCAA---------ttttg-attt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237658 16 + 128539186 GTTTCAA---------ttttg-tttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579728 16 + 6255621 GTTTCAA---------ttttg-attt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615093 16 - 8658521 GTTTCAA---------ttttg-tttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114814852 17 + 124281992 TTTTAAAC--------tttta-tttt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 459442 18 - 9212255 TTTTTTGA--------ttttattttt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2873754 17 + 4466143 ttttttag--------tttta-tttc i cebCap1.NW_016107484v1 C 0 C 0 s dasNov3.JH568189 839068 25 - 1116856 ttttaaaaaaaaattttttta-attt i dasNov3.JH568189 C 0 I 467 e micMur3.chr21 9469237 458 - 31815103 I e mm10.chr5 124811652 789 + 151834684 I e proCoq1.NW_012154285v1 6721052 330 - 9870158 I e canFam3.chr26 33160087 0 - 38964690 C e otoGar3.GL873618 4306226 314 + 7922563 T e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I a score=45550.000000 s hg38.chr12_KI270834v1_alt 71716 5 + 119498 ttatc s panTro5.chr12 127357776 5 + 137163284 ttatc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708815 5 + 135337776 ttatc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221933 5 - 8369578 ttatc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880406 5 + 106955855 ttatc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995470 5 + 133663169 ttatc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243571 5 + 137757926 ttatc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642151 5 - 16319837 ttatc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265870 5 + 20526591 ttatc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237674 5 + 128539186 ttatc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579744 5 + 6255621 ttatc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615109 5 - 8658521 ttatc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114814869 5 + 124281992 tgatc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 459460 5 - 9212255 ttatc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2873771 5 + 4466143 ttatc i cebCap1.NW_016107484v1 C 0 C 0 s canFam3.chr26 33160087 1 - 38964690 ----C i canFam3.chr26 C 0 C 0 e micMur3.chr21 9469237 458 - 31815103 I e mm10.chr5 124811652 789 + 151834684 I e proCoq1.NW_012154285v1 6721052 330 - 9870158 I e dasNov3.JH568189 839093 467 - 1116856 I e otoGar3.GL873618 4306226 314 + 7922563 T e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I a score=404540.000000 s hg38.chr12_KI270834v1_alt 71721 43 + 119498 ttagggatagggtctctgtttcccaggct----ggagtgcagtggtg s panTro5.chr12 127357781 43 + 137163284 ttagggatagggtctctgtttcccaggct----ggagtgcagtggtg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708820 43 + 135337776 ttagggatagggtctctgtttcccaggct----ggagtgcagtggtg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221938 43 - 8369578 ttagggatagggtctctgtttcccaggct----ggagtgcagtggtg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880411 43 + 106955855 ttagagatagggtttctgtttcccaggct----ggagtgcagtggtg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995475 43 + 133663169 ttagagatagggtctctgtttcccaggct----ggagggcagtggtg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243576 43 + 137757926 ttagagatagggtctctgtttcccaggct----ggagggcagtggtg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642156 43 - 16319837 ttagagatggggtctctgtttcccaggct----ggagggcagtggtg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265875 43 + 20526591 ttagagatagggtctctgtttcccgggct----ggagggcagtgatg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237679 43 + 128539186 ttagagatagggtctctgtttcccaggct----ggagtgcagtggtg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579749 43 + 6255621 ttagagatagggtctctgtttcccaggct----ggagggcagtggtg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615114 43 - 8658521 ttagagatagggtctctgtttcccaggct----ggagtgcagttgtg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114814874 43 + 124281992 tcagagatagggtctctgtttcccaggct----ggagtgcagtagtg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 459465 43 - 9212255 ttagagatagggtctctgtttcccaggct----ggagtgcagtggtg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2873776 43 + 4466143 ctagagatagggtctctgtttcccagggt----ggagtgcagtggtg i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4305912 46 + 7922563 ttagagacagagtctcactttatcacccttggaagagtgccatggc- i otoGar3.GL873618 T 314 C 0 s canFam3.chr26 33160088 19 - 38964690 TTAGAGATATGATCT-----------GAT----G------------- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9469237 458 - 31815103 I e mm10.chr5 124811652 789 + 151834684 I e proCoq1.NW_012154285v1 6721052 330 - 9870158 I e dasNov3.JH568189 839093 467 - 1116856 I e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I a score=1033118.000000 s hg38.chr12_KI270834v1_alt 71764 125 + 119498 caaccatggctcactgcagcctcgacctcctgggttcacgtgctcctcccgcctcagcctcctgagtagc-tgggaccacaggtg-cagccaccatgcctggc-----------------------------------------------------------------------------------------------------------------------------------------------------------GCACATTAGAGACAACTATCTGCT s panTro5.chr12 127357824 125 + 137163284 caatcatggctcactgcagcctcgacctcctgggctcacgggctactcccgcctcagcctcctgagtagc-tgggaccacaggtg-cagccaccatacctggc-----------------------------------------------------------------------------------------------------------------------------------------------------------GCACATTAGAGACAACTGTCTGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708863 125 + 135337776 caatcatggctcactgcagcctcgacctcctgggctcacgggctactcccgcctcagcctcctgagtagc-tgggaccacaggtg-cagccaccatacctggc-----------------------------------------------------------------------------------------------------------------------------------------------------------GCACATTAGAGACAACTGTCTGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8221981 122 - 8369578 caatcatggctcactgcagcctcgacctcctgggctcacgtgctcctcccgcctcagcctcct--gtagc-tgggaccacaggtg-cagccaccatacctggc-----------------------------------------------------------------------------------------------------------------------------------------------------------GCACATTAGAGATAACTGTCT-CT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880454 124 + 106955855 caatcatggctcactgcagcctcgacctcctgggctcatgtgctcctcccacctcggcctcctgagtagc-tgggaccacaggtg-cagccaccatacctggc-----------------------------------------------------------------------------------------------------------------------------------------------------------GCGCATTAGAGAT-ACTGTCTGCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995518 124 + 133663169 caatcatggctcactgcagcctcgacctcctgggctcacgtgctcctcccacctcagcctcctgagtagc-tgggaccacaggcg-cagccaccatgcctggc-----------------------------------------------------------------------------------------------------------------------------------------------------------ACACATTGGAGAT-ATTGTCTGCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243619 124 + 137757926 caatcatggctcactgcagcctcgacctcctgggctcacgtgctcctcccacctcagcctcctgagtagc-tgggaccacaggcg-cagccaccatgcctggc-----------------------------------------------------------------------------------------------------------------------------------------------------------ACACATTGGAGAT-ATTGTCTGCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642199 124 - 16319837 caatcatggctcactgcagcctcgacctcctgggctcacgtgctcctcccacctcagcctcctgagtagc-tgggaccacaggcg-cagccaccatgcctggc-----------------------------------------------------------------------------------------------------------------------------------------------------------ACACATTGGAGAT-ATTGTCTGCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12265918 115 + 20526591 caatcatggctcactgcagcctcgacctcctgggctcacgtgctcctcccacctcagcctcctgagtagc-tgggaccacaggtg----------tgcCTGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------ACACATTGGAGAT-ACTGTCTGCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237722 124 + 128539186 caatcatggttcactgcagcctcgacctcctgggctcacgtgctcctcccgcctcagcctcctgagtagc-tggcgccacaggtg-cagccaccatgcctggc-----------------------------------------------------------------------------------------------------------------------------------------------------------ACACATTGGAGAT-ACTGTCTGCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579792 115 + 6255621 caatcatggctcactgcagcctcgacctcctgggctcacgtgctcctcccacctcagcctcctgagtagc-tgggaccacaggtg----------tgcCTGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------ACACATTGGAGAT-ACTGTCTGCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615157 124 - 8658521 cagtcatggctcactgcagcctcaacctcctgggctcatgtgctcctcccgcctcagcctcctgagtagc-tgggaccacaggtg-cagccaccatgcctggc-----------------------------------------------------------------------------------------------------------------------------------------------------------ACACATTAGAGAT-ACTGTCTGCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114814917 124 + 124281992 cagctgtggctcactgcagcctctccttcctgggctcacatgctcctcccacctcagcctcctgagtcac-tgggaccccaggtg-cagtcaccatggctggc-----------------------------------------------------------------------------------------------------------------------------------------------------------CCACATTAGAGAT-AGTGTTTCCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 459508 122 - 9212255 cagtcatggctcactgcagcctcga--tcctgggctcacatgctcctcccacctcagcctcctgagtagc-tgggaccacaggtg-cagccaccatggctggc-----------------------------------------------------------------------------------------------------------------------------------------------------------CCACATTAGAGAC-AGTGTTTCCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2873819 125 + 4466143 cagttgtggctcactgcagccttgacttcctgggctcacatgctcctcccacctcagcctcctgtgtaacttgggaccacaagcg-cagccaccatggctggc-----------------------------------------------------------------------------------------------------------------------------------------------------------CCACATTAGAGAC-AGTGTTTCCT i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4305958 279 + 7922563 --atcacagctcacagcaacctcaaactcctgggcttaggtgattctcttgcctcagcctcccgagtagc-tgggactacaggtgcccaccacaatgcctggctattttttgttacagtttggccatggccgggtttgaacccaccaccctcagtatatggggccagcgccctacccactgagacacagggaccgcccGGCATGCTCTTATTTTTATTCTCAGTGTTGGGCCATACACTTTGTTGCTCTGCATTTTCATCTCATTAGAGATAACTGTTGAGT i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9469237 458 - 31815103 I e mm10.chr5 124811652 789 + 151834684 I e proCoq1.NW_012154285v1 6721052 330 - 9870158 I e dasNov3.JH568189 839093 467 - 1116856 I e canFam3.chr26 33160107 0 - 38964690 C e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I a score=241357.000000 s hg38.chr12_KI270834v1_alt 71889 27 + 119498 GCAGCAGCATGCACTGCCGGACAGGGC s panTro5.chr12 127357949 27 + 137163284 GCAGCAGCATGCACTGCCGGACAGGGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125708988 27 + 135337776 GCAGCAGCATGCACTGCCGGACAGGGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8222103 27 - 8369578 GCAGCAGCTTGCACTGCTGGACAGGGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880578 27 + 106955855 GCAGCAGCGTGCACTGCTGGACAGGGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995642 27 + 133663169 GCAGCAGCATGCACTGCTGGACAGGGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243743 27 + 137757926 GCAGCAGCATGCACTGCTGGACAGGGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642323 27 - 16319837 GCAGCAGCATGCACTGCTGGACAGGGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12266033 27 + 20526591 GCAGCAGCATGCACTGCTGGACAGGGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237846 27 + 128539186 GCAGCAGCATGCACTGCTGGACAGGGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579907 27 + 6255621 GCAGCAGCATGCACTGCTGGACAGGGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615281 27 - 8658521 GCAGCAGCATGCACTGCTGGACAGGGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114815041 21 + 124281992 GCA------TGCTTTGCTGGACAGGGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 459630 21 - 9212255 GCA------TGCTTTGCTGGACAGGGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2873944 21 + 4466143 GCA------TGCTTTGCTGGACAGGGC i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4306237 24 + 7922563 GCAACA---TACTCTGTTAGGAAGTGC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33160107 27 - 38964690 GCAGCAGCATGCTCTGTTGGAAAACGC i canFam3.chr26 C 0 C 0 e micMur3.chr21 9469237 458 - 31815103 I e mm10.chr5 124811652 789 + 151834684 I e proCoq1.NW_012154285v1 6721052 330 - 9870158 I e dasNov3.JH568189 839093 467 - 1116856 I e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I a score=1083229.000000 s hg38.chr12_KI270834v1_alt 71916 102 + 119498 TTTTTAAAAAG-------------------------------------TGCTCTGGC------TGTTGGCCAAGGGAAGCACTGTCTTCAG-AAATACATTCATTTTGGCTGATGCTGTCCCAAGTATGGCAGTGGAGGTACTGAA s panTro5.chr12 127357976 102 + 137163284 TTTTTAAAAAG-------------------------------------TGCTCTGGC------TATTGGCCAAGGGAAGCACTGTTTTCAG-AAATACATTCATTTTGGCTGATGCCGTCCCAAGTATGGCAGTGGAGGTACCGAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125709015 102 + 135337776 TTTTTAAAAAG-------------------------------------TGCTCTGGC------TATTGGCCAAGGGAAGCACTGTTTTCAG-AAATACATTCATTTTGGCTGATGCCGTCCCAAGTATGGCAGTGGAGGTACTGAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8222130 102 - 8369578 TTTTTAAAAAG-------------------------------------TGCTCTGGC------TATTGGCCAAGGGAAGCACTGTTTTCAG-AAATACATTCATTTTGGCTGATGCCGTCCCAAGTATGGCAGTGGAGGTACTGAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880605 101 + 106955855 TTTTTAAAAAG-------------------------------------TGCTCTGGC------TATTGGCCAAGGGAAGCAGTGTTTTCAG-AAATACATTCATTTTGGCTGATGCCGTCCC-AGTATGGCAGTGGAGGTACCGAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995669 101 + 133663169 GTTTTAAAAAG-------------------------------------TGCTCTGGC------TATTGGCCAAGGGAAGCACTGTTTTCAG-ATATATATTCATTTTGGCTGATGCCATCCC-AGTATGGCAGTGGAGGTACCGAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243770 101 + 137757926 GTTTTAAAAAG-------------------------------------TGCTCTGGC------TATTGGCCAAGGGAAGCACTGTTTTCAG-ATATATATTCATTTTGGCTGATGCCATCCC-AGTATGGCAGTGGAGGTACCGAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642350 101 - 16319837 GTTTTAAAAAG-------------------------------------TGCTCTGGC------TATTGGCCAAGGGAAGCACTGTTTTCAG-ATATATATTCATTTTGGCTGATGCCATCCC-AGTATGGCAGTGGAGGTACCGAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12266060 101 + 20526591 GTTTTAAAAAG-------------------------------------TGCTCTGGC------TATTGGCCAAGGGAAGCACTGTTTTCAG-ATATATATTCATTTTGGCTGATGCCATCCC-AGTATGGCAGTGGAGGTACCGAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237873 101 + 128539186 TTTTTAAAAAG-------------------------------------TGCTCTGGC------TATTGGCCAAGGGAAGCACTGTTTTCAG-ATACATATTCATTTTGGCTGATGCCATCCC-AGTATGGCAGTGGAGGTACCGAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 579934 101 + 6255621 GTTTTAAAAAG-------------------------------------TGCTCTGGC------TATTGGCCAAGGGAAGCACTGTTTTCAG-ATATATATTCATTTTGGCTGATGCCATCCC-AGTATGGCAGTGGAGGTACCGAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615308 101 - 8658521 TTTTTAAAAAG-------------------------------------TGCTCTGGC------TATTGGCCAAGGGAAGCACTGTTTTCAG-ATATATATTCATTTTGGCTGATGCCATCCC-AATATGGCAGTGGAGGTACCAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114815062 101 + 124281992 TTTTTAAAAAG-------------------------------------TGCTCTGGC------TACTGGCCAAGGGAAGCACTGTTTTCAG-AAATGCATTCATTTTGGCCGATGCTGTCCC-AGTGTGGCAGTGGGGGTACTGAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 459651 96 - 9212255 TTTTTAAAAAG-------------------------------------TGCTCTGGC------TACTGGCCAAGGGAAGCACTGTTTTCAG-AAATACATTCATTTTGGCTGATGCTGTCCC-AGTGTGGCAGTGGGG-----GAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2873965 101 + 4466143 TTTTTAAAGAG-------------------------------------TGCTCTGGC------TACTGGCCAAGGGAAGCACTGTTTTCAG-AAATACATTCATTTTGGCTGATGCTGTCCC-AACGTGGCAGTGGGGGCACCGAA i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4306261 88 + 7922563 TTTTTAAAAAA-------------------------------------TGCTCCGGC-------ACTGGC------------TGTTTTTAG-ACATGTATTCATTTTGACCAGTGCTGTCCC-CATGTGGCAGTGGAGGCATTGAA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33160134 138 - 38964690 TTTTGAAAAAAATTCTGTGaaaaaaaaaaaaaaagaaaaaaaTTCTGTGGCTCCAGC------CATTGGCCAAGGGAAGCATGGTTTTCAG-AAATACATTTATTTTGGCCAATGTGGTCCC-AGCATGTCAGTGGAGGTACTGAG i canFam3.chr26 C 0 I 4 s dasNov3.JH568189 839560 102 - 1116856 TTTTTTTAATA-------------------------------------TGACCTGGCAGGGGCTGTTGGCTAAATGAAATACTGTTTTCAGAAAAAATATTCATTTGATTTGATACTGTCCC-AGTTGGGT------GGCACTGAA i dasNov3.JH568189 I 467 C 0 e micMur3.chr21 9469237 458 - 31815103 I e mm10.chr5 124811652 789 + 151834684 I e proCoq1.NW_012154285v1 6721052 330 - 9870158 I e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I a score=920698.000000 s hg38.chr12_KI270834v1_alt 72018 114 + 119498 AGACATGTGCCATCTTGTAAAAA-----TGTTTTGTTTTGTTTTTGATAAGCTGAAGTTAGGCAAATCTCAGTGA----------------------------------TTGTG-----------TTGCGAACAGTGGCCACCTCGACGATGAACATAGGTGCC s panTro5.chr12 127358078 114 + 137163284 AGACACGTGCCATGTTGTAAAAA-----TGTTTTGTTTTGTTTTTGATAAGCTGAAGTTAGGCAAATCTCAGTGA----------------------------------TTGTG-----------TTGGGAACAGTGGCCACCTCGACGATGAACATAGGTGCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125709117 119 + 135337776 AGACACGTGCCATGTTGTAAAAATGTTCTGTTTTGTTTTGTTTTTGATAAGCTGAAGTTAGGCAAATCTCAGTGA----------------------------------TTGTG-----------TTGGGAACAGTGGCCACCTCGACGATGAACATAGGTGCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8222232 114 - 8369578 AGACACGTGCCATCTTGTAAAAA-----TGTTTTGTTTTGTTTTTGATAAGCTGAAGTTAGGCAAATCTCAGTGA----------------------------------TTGTG-----------TTGGGAACAATGGCCACCTTGATGATGAACATAGGTGCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880706 119 + 106955855 AGACACGTGCCATCTTATAAAAATGTTTTCTTTTGTTTTGTTTTTGATAAGCTGAAGTTAGGCAAATCCCAGTGA----------------------------------TTGTG-----------TTGGGAACAGTGGCCACCTCGACGATGAACACGGGTGCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995770 113 + 133663169 AGACACGTGCCATCTTGTAAAAA-----TGTTTTGTTTTG-TTTTGATAAGCTGAAGTTAGGCAAATCCCAGTGA----------------------------------TTGTG-----------TTGGGAACAGTGGCCACCTCGACAATGAACATAGGTGCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243871 113 + 137757926 AGACACGTGCCATCTTGTAAAAA-----TGTTTTGTTTTG-TTTTGATAAGCTGAAGTTAGGCAAATCCCAGTGA----------------------------------TTGTG-----------TTGGGAACAGTGGCCACCTCGACAATGAACATAGGTGCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642451 113 - 16319837 AGACACGTGCCATCTTGTAAAAA-----TGTTTTGTTTTG-TTTTGATAAACTGAAGTTAGGCAAATCCCAGTGA----------------------------------TTGTG-----------TTGGGAACAGTGGCCACCTCGACAATGAACATAGGTGCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12266161 113 + 20526591 AGACACGTGCCATCTTGTAAAAA-----TGTTTTGTTTTG-TTTTGATAAGCTGAAGTTAGGCAAATCCCAGTGA----------------------------------TTGTG-----------TTGGGAACAGTGGCCACCTCGACAATGAACATAGGTGCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119237974 114 + 128539186 AGACACGTGCCATCTTGTAAAAA-----TGTTTTGTTTTGTTTTTGATAAGCTGAAGTTAGGCAAATCCCAGTGA----------------------------------TTGTG-----------TTGGGAACAGTGGCCACCTTGACAATGAACATAGGTGCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 580035 113 + 6255621 AGACACGTGCCATCTTGTAAAAA-----TGTTTTGTTTTG-TTTTGATAAGCTGAAGTTAGGCAAATCCCAGTGA----------------------------------TTGTG-----------TTGGGAACAGTGGCCACCTCGACAATGAACATAGGTGCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615409 113 - 8658521 AGACACGTGCCATCTTATAAAAA-----TGTTTTGTTTTG-TTTTGATAAGCTGAAGTTAGGCAAATCCCAGTGA----------------------------------TTGTG-----------TTGGGAACAGTGGCCACCTCGACAATGAACATAGGTGCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114815163 123 + 124281992 AGATGCATGCTGTCTTGTAAAAA-----TGCTTTCTTTTGTTTTGGTTAAGCTGAAGTTAAGCGAATCCCAGTGAG-----------ACC--------------CCTGAGTGTG-----------TTGGGAATGGTGGCCACCTTGACGATGAATGTGGGTACC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 459747 122 - 9212255 AGATGAATGCCATCTTGTAAAAA-----CGTTTTCTTTTGTTTTTGTTAAGCTGAAGTGAAGCGAATCCCAGTGAG-----------ACC--------------CCTGGGTGT------------TTGGGAACGGTGGCCACCCTGATGGTGAACATGGGTGCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2874066 123 + 4466143 AGATGCATGCCATCTTGTAAAAA-----TGTTTTCTTTTGTTTTTGTTAAGCTGAAGTTAAGCGAATCCCAGTGAG-----------ACC--------------CCTGGGTGTG-----------TTGGGAACGGTGGCCACCTTGACGATGAACGTGGGTACC i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4306349 123 + 7922563 GGATGCATGACATCTCTTAAAAG-----TGAT---CTTTG-TTTCCATGAGCCCACATTTGATGAATCTTAGGGTACCAGAGTGCTCACCTG------------CCCAGATGTG-----------TTCAGAGTGG------CCTTGACAATGAACCC---TGCA i otoGar3.GL873618 C 0 I 2 s mm10.chr5 124812441 107 + 151834684 AGGACTATGTGGTCCTGTAGGAG-----TGAGTTCTTTTCCTCTC-----------GTTGGATGGGTCCCAGTGA------------CAC-------------------TCATGCAAGGTCTCACCCTGGAGCCGGGACCAC--TGACTATGCGCT-------- i mm10.chr5 I 789 C 0 s canFam3.chr26 33160276 116 - 38964690 GCTTGCTTGACATCTCATGAAGA-----TGACTTTCTTAA------TTGAGCCCCAATGGGATGAATCACAATGA----------------GGC----------CCCTGGAGCG-----------CTGGGAATAGCGCCTACCCTGGTGATGAGTACAGCTCCT i canFam3.chr26 I 4 C 0 s dasNov3.JH568189 839662 117 - 1116856 ATATACAGGAGAGCTTGTAAAAA-----TAATTTTCTT---TTTCTGTAAGCCGAAGTTGGACAAATCCCAGTGA------------GGCTACCGGAAAGCTTGCCCCAGAGTT-----------TTCAGGCCAGTGACTGC--------------TAGGTG-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469237 458 - 31815103 I e proCoq1.NW_012154285v1 6721052 330 - 9870158 I e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I a score=3046310.000000 s hg38.chr12_KI270834v1_alt 72132 169 + 119498 CTCTTTCCTCAGCTCAGTGCAAGCGTCTGGATGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCGGAGAAGTCCGCCGCCTGCGAGGCCTTGCTGGAGGAGATCGCCGTCAACACCGC s panTro5.chr12 127358192 169 + 137163284 CTCTTTCCTCAGCTCAGTGCAAGCGTCTGGACGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCGGAGAAGTCCGCCGCCTGCGAGGCCTTGCTGGAAGAGATCGCCATCAACACCGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125709236 169 + 135337776 CTCTTTCCTCAGCTCAGTGCAAGCGTCTGGACGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCGGAGAAGTCCGCCGCCTGCGAGGCCTTGCTGGAGGAGATCGCCATCAACACCGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8222346 169 - 8369578 CTCTTTCCTCAGCTCAGTGCAAGCGTCTGGACGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAGCCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCGGAGAAGTCTGCCGCCTGCGAGGCCTTGCTGGAGGAGATCGCCGTCAACACCGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880825 169 + 106955855 CTTTTTCCTCAGCTCAGTGTAAGCGTCTGGACGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTACTGGCCGAGAAGTCCGCTGCCTGCGAGGCCTTGCTGGAGGAGATCGCCGTCAACACCGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123995883 169 + 133663169 TTCTTTCCTCAGCTCAGTGCAAGCGTCTGGACGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCCGAGAAGTCCGCCGCCTGCGAGGCCTTGCTGGAGGAGATCGCCGTCAACACCGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128243984 169 + 137757926 CTCTTTCCTCAGCTCAGTGCAAGCGTCTGGACGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCCGAGAAGTCCGCCGCCTGCGAGGCCTTGCTGGAGGAGATCGCCGTCAACACCGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642564 169 - 16319837 CTCTTTCCTCAGCTCAGTGCAAGCGTCTGGACGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCCGAGAAGTCCGCCGCCTGCGAGGCCTTGCTGGAGGAGATCGCCGTCAACACCGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12266274 169 + 20526591 CTCTTTCCTCAGCTCAGTGCAAGCGTCTGGACGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCCGAGAAGTCTGCCGCCTGCGAGGCCTTGCTGGAGGAGATCGCCGTCAACACTGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119238088 169 + 128539186 CTCTTTCCTCAGCTCAGTGCAAGCGTCTGGAGGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCCGAGAAGTCCGCCGCCTGCGAGGCCTTGCTGGAGGAGATTGCCGTCAACACCGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 580148 169 + 6255621 CTCTTTCCTCAGCTCAGTGCAAGCGTCTGGACGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCCGAGAAGTCTGCCGCCTGCGAGGCCTTGCTGGAGGAGATCGCCGTCAACACCGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615522 169 - 8658521 CTCTTTCCTCAGCTCAGTGCAAGCGTCTGGATGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATTGTGCTGGCCGAGAAGTCCGCCGCCTGTGAGGCCTTGCTGGAGGAGATCGCTGTCAACACCGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114815286 169 + 124281992 CTCTTTCCTCAGCTCAGTGCAAGCGTCTGGAGGGGGGTCTGGACAAGCTGAAGGAAGCCACCATCCAGCTGGACGAGCTGAACCAGAAGTTGGCTGAGCAGAAGATCGTGCTGGCTGAGAAGTCCATTGCCTGTGAGGCTTTGCTGGAGGAGATCGCCATCAACACCAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 459869 169 - 9212255 CTCTTCCCTCAGCTCAATGCAAGCGTCTGGAGGGGGGGCTGGACAAGCTGAAGGAAGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGGTCGTGCTGGCTGAGAAGTCCGTGGCCTGCGAGGCCTTGCTGGAGGAGATCGCCATCAACACCGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2874189 169 + 4466143 CTCTTTCCTCAGCTCAGTGCAAGCGTCTGGAGGGGGGGCTGGACAAGCTGAAGGAAGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCAGAGCAGAAGATCGTGCTGGCTGAGAAGTCCGTCGCCTGCGAGGCCTTGCTGGAGGAGATCGCCATCAACACCGC i cebCap1.NW_016107484v1 C 0 C 0 s micMur3.chr21 9469695 169 - 31815103 CTCTCTCCCCAGCCCAGTGCAAGCGTCTGGAGGGCGGCCTGGACAAGCTGAAGGAGGCCGCCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCGGAGAAGTCGGCCGCCTGTGAGGCCCTGCTGGAGGAGATCGCCACCAACACCGC i micMur3.chr21 I 458 I 2197 s proCoq1.NW_012154285v1 6721382 169 - 9870158 CTCTCTCCTCAGCCCAGTGCAGGCGTCTGGAGGGGGGCCTGGACAAGCTCAAGGAGGCCACCATTCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCGGAGAAGTCGGCCGCCTGCGAGGCCCTGCTGGAGGAGATCGCCGCCAACACCGC i proCoq1.NW_012154285v1 I 330 I 335 s otoGar3.GL873618 4306474 168 + 7922563 CTCT-TTCTCAGCTCAGTGCAAACGTCTGGAGGGGGGCCTGGACAAGCTGAAGGAGGCCACCATTCAACTGGATGAGCTGAACCAAAAGCTGGCCGAACAGAAGATTGTGCTGGCAGAGAAGTCTGCTGCCTGTGAGGCCTTGCTGGAGGAGATTGCCACCAACACAGC i otoGar3.GL873618 I 2 C 0 s mm10.chr5 124812548 169 + 151834684 GTCTGCCCCCAGCCCAGTGCAAGCGTCTGGAAGGAGGGCTGGACAAGCTGAAGGAGGCGACCATCCAGCTGGACGAGCTGAACCTGAAGCTGGCAGAGCAGAAGATCGTCCTGGCCGAGAAGTCAGCCGCCTGCGAGGCCCTGCTGGAGGAAATCGCCACCAACACAGC i mm10.chr5 C 0 C 0 s canFam3.chr26 33160392 169 - 38964690 CTCTTTCCTCAGCTCAGTGCAAGCGTCTGGAGGGTGGGCTGGACAAGCTGAAGGAGGCCACCATCGAGTTGGATGAGCTGAACCAGAAGCTGGCCGTGCAGAAAGTGGTGCTGGCGGAGAAGTCTGCTGCCTGTGAGGCCCTGCTGGAGGAAATTGCCACCAACACAAC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 839779 169 - 1116856 CTATTTCCTCAGCTCAGTGCAAGCGCCTGGAGGGAGGGCTGGACAAGCTGAAGGAGGCCACCATTCAGCTGGATGAGCTGAACCAGAAGCTGGCTGAGCAGAAGATCGTGCTGGCCGAGAAGTCGGCCGCCTGCGAGGCCCTGCTGGAGGAGATCGCCACCAACACGGC i dasNov3.JH568189 C 0 C 0 e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I a score=70585.000000 s hg38.chr12_KI270834v1_alt 72301 40 + 119498 TGTAGGTGAGTG---AGGGC-GGGG--------------CCAGGG-CAGCCCATCCCC-A s panTro5.chr12 127358361 1 + 137163284 T----------------------------------------------------------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125709405 8 + 135337776 TGTAGGTG---------------------------------------------------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8222515 40 - 8369578 TGTAGGTGAGTG---AGGGC-GGGG--------------CCAGGG-CAGCCCATCCCC-A i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97880994 41 + 106955855 TGTAGGTGGGTA---AGGGCTGGGG--------------CCAGGG-CAGCCCACCCCC-A i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123996052 41 + 133663169 TGTAGGTGGGTA---AGGGCCGGGG--------------CCAGGG-CAGCCCATCCCC-C i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128244153 41 + 137757926 TGTAGGTGGGTA---AGGGCCGGGG--------------CCAGGG-CAGCCCATCCCC-C i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642733 41 - 16319837 TGTAGGTGGGTA---AGGGCCGGGG--------------CCAGGG-CAGCCCATCCCC-C i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12266443 41 + 20526591 TGTAGGTGGGTA---AGGGCCGGGG--------------CCAGGG-CAGCCCATCCCC-C i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119238257 18 + 128539186 TGTAGGTGAGTG---AGGGCT--------------------------------------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 580317 41 + 6255621 TGTAGGTGGGTA---AGGGCCGGGG--------------CCAGGG-CAGCCCATCCCC-C i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615691 41 - 8658521 TGTAGGTGGGTA---AAGGCCGGGG--------------CCAGGG-CAGCCCATCCCC-A i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114815455 40 + 124281992 TGTAGGTGGGTA---AGGGCTGGGG--------------CCGGGG-CAGCCCCTCTCC-- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 460038 40 - 9212255 TGTAGGTGGGTG---AGGGCGGGGG--------------CTGGGG-CAGCCCATCCCC-- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2874358 41 + 4466143 TGTAGGTGGGTA---AGGGCTGGGG--------------CCGGGG-CAGCCCATCTCCA- i cebCap1.NW_016107484v1 C 0 I 75 s otoGar3.GL873618 4306642 21 + 7922563 CATAGGTGATTG---AGGG-------------------------G-CAGT---------- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124812717 52 + 151834684 ----CATAGGCA---AGGGCTGGGGGTGGGCGATAAGCCCTGGGGCCAGTCTGTGCCC-A i mm10.chr5 C 0 C 0 s canFam3.chr26 33160561 26 - 38964690 CATTGGTGAGTG--------TGGGG--------------C------CAGCTCTC------ i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 839948 27 - 1116856 CATAGGTGAGCGTGTGGGACCGGCT--------------CC------------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e proCoq1.NW_012154285v1 6721551 335 - 9870158 I e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I a score=1365.000000 s hg38.chr12_KI270834v1_alt 72341 1 + 119498 A s gorGor5.CYUI01015152v1 8222555 1 - 8369578 A i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123996093 1 + 133663169 A i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128244194 1 + 137757926 A i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642774 1 - 16319837 A i macNem1.NW_012010578v1 C 0 C 0 s mm10.chr5 124812769 1 + 151834684 A i mm10.chr5 C 0 I 241 e micMur3.chr21 9469864 2197 - 31815103 I e proCoq1.NW_012154285v1 6721551 335 - 9870158 I e dasNov3.JH568189 839975 0 - 1116856 C e canFam3.chr26 33160587 0 - 38964690 C e otoGar3.GL873618 4306663 0 + 7922563 C e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I e cebCap1.NW_016107484v1 2874399 75 + 4466143 I e saiBol1.JH378194 460078 0 - 9212255 C e calJac3.chr9 114815495 0 + 124281992 C e colAng1.NW_012116043v1 4615732 0 - 8658521 C e manLeu1.NW_012103587v1 580358 0 + 6255621 C e chlSab2.chr11 119238275 0 + 128539186 C e cerAty1.NW_012001186v1 12266484 0 + 20526591 C e nomLeu3.chr10 97881035 0 + 106955855 C e panPan2.chr12 125709413 0 + 135337776 C e panTro5.chr12 127358362 0 + 137163284 C a score=-5920.000000 s hg38.chr12_KI270834v1_alt 72342 18 + 119498 CACCCAAT---------------------------------------AC-CCACCGTA s panTro5.chr12 127358362 3 + 137163284 -------------------------------------------------------GTA i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8222556 17 - 8369578 CACCCAAC---------------------------------------A--CCACTGTA i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123996094 58 + 133663169 CACCACTGTAGGTGAGTGAGGATGGGGGCCAGGGCAGCCCATCCCCAACACCACTGTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128244195 58 + 137757926 CACCACTGTAGGTGAGTGAGGATGGGGGCCAGGGCAGCCCATCCCCAACACCACTGTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642775 58 - 16319837 CACCACTGTAGGTGAGTGAGGATGGGGGCCAGGGCAGCCCATCCCCAACACCACTGTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12266484 11 + 20526591 -----------------------------------------------ACACCACTGTA i cerAty1.NW_012001186v1 C 0 C 0 s manLeu1.NW_012103587v1 580358 11 + 6255621 -----------------------------------------------ACACCACTGTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615732 11 - 8658521 -----------------------------------------------ACACCACCGTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114815495 20 + 124281992 --------------------------------------GCATCCCCAACACTGCCGTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 460078 18 - 9212255 --------------------------------------ACAT--CCAACACTGCCATG i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6721551 335 - 9870158 I e dasNov3.JH568189 839975 0 - 1116856 C e canFam3.chr26 33160587 0 - 38964690 C e otoGar3.GL873618 4306663 0 + 7922563 C e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I e cebCap1.NW_016107484v1 2874399 75 + 4466143 I e chlSab2.chr11 119238275 0 + 128539186 C e nomLeu3.chr10 97881035 0 + 106955855 C e panPan2.chr12 125709413 0 + 135337776 C a score=93092.000000 s hg38.chr12_KI270834v1_alt 72360 17 + 119498 GGTGAGTGAGGGCGGGG s panTro5.chr12 127358365 17 + 137163284 GGTGAGTGAGGGCGGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125709413 13 + 135337776 ----AGTGAGGGCGGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8222573 16 - 8369578 GGTGAGTGAGGGCGGG- i gorGor5.CYUI01015152v1 C 0 I 202 s rheMac8.chr11 123996152 17 + 133663169 GGTGAGTGAGGGTGGGG i rheMac8.chr11 C 0 I 1 s macFas5.chr11 128244253 17 + 137757926 GGTGAGTGAGGGTGGGG i macFas5.chr11 C 0 I 1 s macNem1.NW_012010578v1 10642833 17 - 16319837 GGTGAGTGAGGGTGGGG i macNem1.NW_012010578v1 C 0 I 1 s cerAty1.NW_012001186v1 12266495 17 + 20526591 GGTGAGTGAGGGTGGGG i cerAty1.NW_012001186v1 C 0 I 1 s chlSab2.chr11 119238275 3 + 128539186 --------------GGG i chlSab2.chr11 C 0 I 1 s manLeu1.NW_012103587v1 580369 17 + 6255621 GGTGAGTGAGGGTGGGG i manLeu1.NW_012103587v1 C 0 I 1 s colAng1.NW_012116043v1 4615743 16 - 8658521 GGTGAGTGAGGGT-GGG i colAng1.NW_012116043v1 C 0 I 1 s calJac3.chr9 114815515 17 + 124281992 GGTGAGTGAGGGCAGGG i calJac3.chr9 C 0 I 1 s saiBol1.JH378194 460096 17 - 9212255 GGTGGGTGAGGGCGGGG i saiBol1.JH378194 C 0 I 1 s cebCap1.NW_016107484v1 2874474 17 + 4466143 GGTGAGTGAGGGCGGGG i cebCap1.NW_016107484v1 I 75 I 1 s otoGar3.GL873618 4306663 12 + 7922563 GGTG-----GGGTGGGC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33160587 9 - 38964690 -------GGGGGCGGG- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 839975 5 - 1116856 ------TGGGG------ i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6721551 335 - 9870158 I e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I e nomLeu3.chr10 97881035 0 + 106955855 C a score=599908.000000 s hg38.chr12_KI270834v1_alt 72377 66 + 119498 CCAGGGCAGCCCAT-CCCGAGCAGGACAGGGCTCTGCC-AGGCCGTCCCTGTGAAACTGCTTGTAGGC s panTro5.chr12 127358382 66 + 137163284 CCAGGGCAGCCCAT-CCCGAGCAGGACAGGGCTCTGCC-AGGACGTCCCTGTGAAACTGCTTGTAGGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125709426 66 + 135337776 CCAGGGCAGCCCAT-CCCGAGCAGGACAGGGCTCTGCC-AGGACGTCCCTGTGAAACTGCTTGTAGGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8222791 66 - 8369578 CCAGGGCAGCCCAT-CCCGAGCAGGACGGGGCTCTGCC-AGGACGTCCCTGTGAAACTGCCTGTAGGC i gorGor5.CYUI01015152v1 I 202 C 0 s nomLeu3.chr10 97881035 48 + 106955855 -------------------AGCAGGACAGGGGTCTGCC-AGGATGTCCCTGTGAAACTGCTTGTAGGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123996170 67 + 133663169 CCAGGGCAGCCCATCCCCTAGCAGGACAGGGCTCTGCC-GGGACGTCCCTGCGAAACTGCTTGTAGGC i rheMac8.chr11 I 1 C 0 s macFas5.chr11 128244271 67 + 137757926 CCAGGGCAGCCCATCCCCTAGCAGGACAGGGCTCTGCC-GGGACGTCCCTGCGAAACTGCTTGTAGGC i macFas5.chr11 I 1 C 0 s macNem1.NW_012010578v1 10642851 67 - 16319837 CCAGGGCAGCCCATCCCCTAGCAGGACAGGGCTCTGCC-GGGACGTCCCTGCGAAACTGCTTGTAGGC i macNem1.NW_012010578v1 I 1 C 0 s cerAty1.NW_012001186v1 12266513 67 + 20526591 CCAGGGCAGCCCATCCCCCAGCAGGACAGGGCTCTGCC-GGGACGTCCCTGCGAAACTGCTTGTAGGC i cerAty1.NW_012001186v1 I 1 C 0 s chlSab2.chr11 119238279 67 + 128539186 CCAGGGCAGCCCATCCCCCAGCAGGACAGGGCTCTGCC-GGGATGTCCCTGCAAAACTGCTTGTAGGC i chlSab2.chr11 I 1 C 0 s manLeu1.NW_012103587v1 580387 67 + 6255621 CCAGGGCAGCCCATCCCCCAGCAGGACAGGGCTCTGCC-GGGATGTCCCTGCGAAACTGCTTGTAGGC i manLeu1.NW_012103587v1 I 1 C 0 s colAng1.NW_012116043v1 4615760 67 - 8658521 CCAGGGCAGCCCATCCCCCAGCAGGACAGGGCTCTGCC-AGGACGTCCCTGCGAAACTGCTTGTAGGC i colAng1.NW_012116043v1 I 1 C 0 s calJac3.chr9 114815533 67 + 124281992 CTGGAGCAGCCCATCCCTGAGCAGGGCAGAGCTCTGCC-GGGACGTCCCTGTGAAACTGCTTGTAGGC i calJac3.chr9 I 1 C 0 s saiBol1.JH378194 460114 63 - 9212255 CCGGGGCAGCCCATCCCCGAGCAGGGCAGAGCTCTGCC-GGGATGTCCCTGTGAAAC----TGTAGGC i saiBol1.JH378194 I 1 C 0 s cebCap1.NW_016107484v1 2874492 67 + 4466143 CTGGGGCAGCCCATCTCCGAGCAGGGCAGAGCTCTGCC-AGGGCGTCCCTGTGAAACTGCTTGTAGGC i cebCap1.NW_016107484v1 I 1 C 0 s otoGar3.GL873618 4306675 58 + 7922563 ----------CCACTCTTTAGTTGGACAAGGTTCCACTGGGGATGTCCTTGAGAAATCACTTTTTGGC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33160596 50 - 38964690 ---------GACTCCCCCAGGTAGGACAGG---------GAGACATTCCTGAGAAGCTGCTTGTCAGC i canFam3.chr26 C 0 I 678 s dasNov3.JH568189 839980 57 - 1116856 -----ACAGAC----CCAGAGCAGGATCGTGCTCCACTAGGGGAATCCCTGGGAGAC--CCTGTGTGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6721551 335 - 9870158 I e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I a score=594356.000000 s hg38.chr12_KI270834v1_alt 72443 67 + 119498 ACTGAGCG-TGCCATC-TTTGACCCTGCAATTCCTGTTTTCTTTCTG-AATTCGTGTCCAGCCAGTCTTG s panTro5.chr12 127358448 67 + 137163284 ACCGAGCG-TGCCATC-TTTGACCCTGCAATTCCTGTTTTCTTTCTG-AATTCGTGTCCAGCCAGTCTCG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125709492 67 + 135337776 ACCGAGCG-TGCCATC-TTTGACCCTGCAATTCCTGTTTTCTTTCTG-AATTCGTGTCCAGCCAGTCTCG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8222857 67 - 8369578 ACCGAGTG-TGCCATC-TTTGACCCTGCAATTCCTGTTTTCTTTCTG-AATTCGTGTCCAGCCAGTCTCG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97881083 67 + 106955855 ACTGAGCG-TGCCATC-TTTGACCCTGCAATTCCTGTTTTCTTTCTG-AATTCGTGTCCAGCCAGTCTCG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123996237 65 + 133663169 ACCAAGCG-TGCCATC--CTGACCCTGCAATTCCTG-TTTCTTTCTG-AATTCGTGTCCAGCCAGTCTCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128244338 65 + 137757926 ACCAAGCG-TGCCATC--CTGACCCTGCAATTCCTG-TTTCTTTCTG-AATTCGTGTCCAGCCAGTCTCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642918 65 - 16319837 ACCAAGCG-TGCCATC--CTGACCCTGCAATTCCTG-TTTCTTTCTG-AATTCGTGTCCAGCCAGTCTCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12266580 65 + 20526591 ACCGAGGG-TGCCATC--CTGACCCTGCAATTCCTG-TTTCTTTCTG-AATTCGTGTCCAGCCAGTCTCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119238346 65 + 128539186 ACCGAGCG-TGCCGTC--TTGACCCTGCAATTCCTG-TTTCTTTCTG-AACTCGTGTCCAGCCAGTTTCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 580454 66 + 6255621 ACCGAGCGTTGCCATC--CTGACCCTGCAATTCCTG-TTTCTTTCTG-AATTTGTGTCCAGCCAGTTTCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615827 65 - 8658521 ACCAAGCA-TGCCATC--TTGACCCTGCAATTCCTG-TTTCTTTCTG-AATTCGTGTCCAGCCAGTCTCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114815600 67 + 124281992 ACTGAGTG-TGCCATC-TTTGACCCTGTGATTCCTG-TTTCTTTTGGAATTCCATGTTCAGCCAGTCTTG i calJac3.chr9 C 0 I 324 s saiBol1.JH378194 460177 66 - 9212255 ACCGAACG-TGCTGTC-TTTGACCCTGTGATTCCTG-TTTCTTTCGG-ATTTCATGTTCAGCCAGTCTTG i saiBol1.JH378194 C 0 I 356 s cebCap1.NW_016107484v1 2874559 66 + 4466143 ACCGAGCA-TGCCGTC-TTTGACCCTGCGATTCCTG-TTTCTTTCGG-AATTCATGTTCAGCCAGTCTTG i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4306733 66 + 7922563 ACTGAACT-TGGCATC-CTTGACACTTGGATTCCTA-TTTCTTTCTG-AGTTCCTATGCAGCCAGTCCTG i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 840037 66 - 1116856 ACTGGGAG-TGGCATCTTTTGACTCTTCAGTTGCTA--TTTTTTCTG-AGTTAGTGTTGAGTCAGTCTCA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6721551 335 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I a score=94943.000000 s hg38.chr12_KI270834v1_alt 72510 9 + 119498 TCCCCTTTC s panTro5.chr12 127358515 9 + 137163284 TCCCCTTTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125709559 9 + 135337776 TCCCCTTTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8222924 9 - 8369578 TCCCCTTTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97881150 9 + 106955855 TTCCCTTTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123996302 9 + 133663169 TCCCTTTTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128244403 9 + 137757926 TCCCTTTTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642983 9 - 16319837 TCCCTTTTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12266645 9 + 20526591 TCCCTTTTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119238411 9 + 128539186 TCCCTTTTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 580520 9 + 6255621 TCCCTTTTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615892 9 - 8658521 TCCCTTTTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114815991 9 + 124281992 TCCCCTTTC i calJac3.chr9 I 324 C 0 s saiBol1.JH378194 460599 9 - 9212255 TCCCCTTTC i saiBol1.JH378194 I 356 C 0 s cebCap1.NW_016107484v1 2874625 9 + 4466143 TCCCCTTTC i cebCap1.NW_016107484v1 C 0 I 333 s otoGar3.GL873618 4306799 9 + 7922563 TCCGCCTTT i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 840103 9 - 1116856 TCCCCTTTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6721551 335 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I a score=311916.000000 s hg38.chr12_KI270834v1_alt 72519 41 + 119498 ATAAGCACTGAGAAGCTACC-----------ATATGTAGGCCCC---------------------------------------------------------TGCGCTGG s panTro5.chr12 127358524 41 + 137163284 ATAAGCACTGAGAAGCTACC-----------ATATGTAGGCCCC---------------------------------------------------------TGCGCTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125709568 41 + 135337776 ATAAGCACTGAGAAGCTACC-----------ATATGTAGGCCCC---------------------------------------------------------TGCGCTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8222933 41 - 8369578 ATAAGCACTGAGAAGCTACC-----------ATATGTAGGCCCC---------------------------------------------------------TGCGCTGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97881159 98 + 106955855 ATAAGCACTGAGACGCTAGC-----------ATATGTAGGCCCCTGTGCTGGTAGCCTGAGGATGTGCTGGTAGCCTGAGGATGTGCTGGTAGCCTGAGGATGTGCTGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123996311 41 + 133663169 ATAAGCACTGAGACACTACC-----------CTATGTAGGCCCC---------------------------------------------------------TGCGCTGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128244412 41 + 137757926 ATAAGCACTGAGACACTACC-----------CTATGTAGGCCCC---------------------------------------------------------TGCGCTGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10642992 41 - 16319837 ATAAGCACTGAGACACTACC-----------CTATGTAGGCCCC---------------------------------------------------------TGTGCTGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12266654 52 + 20526591 ATAAGCACTGAGACGCTACCATATGTAGTGTCTATGTAGGCCCG---------------------------------------------------------TGCGCTGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119238420 52 + 128539186 ATAAGCACTGAGACGCTACCATATGTAGTGTCTATGTAGGCCCG---------------------------------------------------------TGCGCTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 580529 41 + 6255621 ATAAGCACTGAGACGCTACCA-----------TATGTAGGCCCC---------------------------------------------------------TGCGCTGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615901 41 - 8658521 ATAAGCACTGAGACGCTACC-----------ATATGTAGGCCCC---------------------------------------------------------TGTGCTGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114816000 41 + 124281992 ACAAGCACTGAGATGCGACC-----------ATACGCAGGCTCC---------------------------------------------------------TGTGCTCG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 460608 41 - 9212255 ATAAGCACTGAGATGCGACC-----------GTACGTAGGCCTC---------------------------------------------------------TGCGCTCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2874967 41 + 4466143 ATAAGCACTGAGATGCGGCC-----------ATACGTAGGCCCC---------------------------------------------------------TGTGCTCT i cebCap1.NW_016107484v1 I 333 C 0 s otoGar3.GL873618 4306808 41 + 7922563 CTAAGCCCTGAGACTCTGCC-----------ATCCATAGGACCC---------------------------------------------------------TGAGTGGG i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 840112 41 - 1116856 ATAAGTCCTGGGACCCTGCC-----------ATGTGCAGGACAT---------------------------------------------------------GCAATTGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6721551 335 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I e aotNan1.NW_018491581v1 1580079 2146 + 5364348 I a score=1307814.000000 s hg38.chr12_KI270834v1_alt 72560 122 + 119498 TAGCCTGAGGATGTTCAGGGGAGTGGAAAAGTCA----CTCGACCCTCTATGGGCTGGTGAACTAAGTCCGT-GGGGTTGAAATGACCTAAGCCTTGGCACCATCGACGCGGGAC-TTTCTTGGTT---CT s panTro5.chr12 127358565 122 + 137163284 TAGCCTGAGGATGTGCAGGGGAGTGGAAAAGTCA----CTCGACCCTCTATGGGCTGGTGAACTAAGTCCGT-GGGGTTGAAATGACCTAAGCCTCGGCACCATCGACGCGGGAC-TTTCTTGGTT---CT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125709609 122 + 135337776 TAGCCTGAGGATGTGCAGGGGAGTGGAAAAGTCA----CTCGACCCTCTATGGGCTGGTGAACTAAGTCCGT-GGGGTTGAAATGACCTAAGCCTCGGCACCATCGACGCGGGAC-TTTCTTGGTT---CT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8222974 122 - 8369578 TAGCCTGAGGATGTTCGGGGGAGTGGAAAAGTCA----CTCGACCCTCTATGGGCTGGTGAACTAAGTCCGT-GGGGTTGAAGTGACCTAAGCCTCGGCACCATCGACGCGGGAC-TTTCTTGGTT---CT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97881257 126 + 106955855 TAGCCTGAGGATGTGCCGGGGAGTGGAAAAGTCA----CTCGACCCTCAATGGGCTGGTGAACTAAGTCCATGGGGGTTGAAATGACCTAAGCCTTGGCACCATCGATGTGGGAC-TTTCTTGGTTCTCCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123996352 126 + 133663169 TAGCCTGAGGATGTGCCAGGGAATGGAAAAGTCA----CTCGACCCTCAATGGGCTGGTGAACTAAGTTCGT-GGGGTTGAAATGACCTAAGCCTTGGCGTCATCAATGTGGGACTTTTCTTGGCTCCCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128244453 126 + 137757926 TAGCCTGAGGATGTGCCAGGGAATGGAAAAGTCA----CTCGACCCTCAATGGGCTGGTGAACTAAGTTCAT-GGGGTTGAAATGACCTAAGCCTTGGCGTCATCAATGTGGGACTTTTCTTGGCTCCCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10643033 126 - 16319837 TAGCCTGAGGATGTGCCAGGGAATGGAAAAGTCA----CTCGACCCTCAATGGGCTGGTGAACTAAGTTCGT-GGGGTTGAAATGACCTAAGCCTTGGCGTCATCAATGTGGGACTTTTCTTGGCTCCCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12266706 126 + 20526591 TAGTCTGAGGATGTGCCAGGGAATGGAAAAGTCA----CTCGACCCTCAATGGGCTGGTGAACTAAGTTCGT-GGGGTTGAAATGACCTAAGCCTTGGCGTCATCGATGTGGGACTTTTCTTGGCTCCCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119238472 126 + 128539186 TAGTCTGAGGGTGTGCCCGGGAATGGAAAAGTCA----CTCGACCTTCAATGGGCTGGTGAACTAAGTCCGT-GGGGTTGAAATGACATAAGCCTTGGCGTCATCGATGTGGGACTTTTCTTGGCTCCCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 580570 125 + 6255621 TAGCTTGAGGATGTGCCAGGAAGTGGAAAAGTCA----CCCGACCCTCAATGGGCTGGTGAACTAAGTCCGT-GGGGTTGAAATGACCTAAGGCTTGGCGTCATCGATGCGGGAC-TTGCTTGGCTCCCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4615942 124 - 8658521 TAGCCGGAGGATGTGCCAGGAAGTGGAAAAGTCA----CTTGACCCTCAATGGGCTGGTGAACTAAGTCCGT--GGGTTGAAATGACCTAAGCCTTGGCATCATCGATGCGGGAC-TTTCTTGGCTCCCCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114816041 125 + 124281992 TAGCCTGAGGATGTGCCCGAGAGTGGAAAAGTCA----CTTCACCCTCAGTGGGCTGGTGACCTAAGTCCAT-GGGATTTAAATGACCTAAGCCTTGGCATCAACCATGCAGGAC-TTTCTTGGTTCTCCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 460649 121 - 9212255 TCGCCTGAGGATGTGCCTGGGAGTGGAAAAGTCA----CTCCACCCTCGGTGGGCTAGTGACCTAA-TCCAT-GGGATTGAGATGCCCTAAGCCTTGGCGTCATCCACACAGGAC-TTTCTTGG---TCCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2875008 125 + 4466143 TAGCCTGAGGATGTGCCCGGGAGTGGAAAAGTCA----CTCCACCCTCAGTGGGCTGGTGACCTAAGTCCAT-GGGATTAAAATGACCTAAGCCTTGGCATCATCCACGCAGGAC-TTTCTTGGCTCTCCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1582225 125 + 5364348 TAGCCTGAGGATGTGCCCGGGAGTGGAAAAGTCA----CTCCACCCTCAGTGGGCTGGTGACCTAAGTCCAT-GGGATTGAAATGACCTAAGCCTTGGCATCATCTACGCAGGAC-TTTCTTGGTTCTTCT i aotNan1.NW_018491581v1 I 2146 C 0 s otoGar3.GL873618 4306849 129 + 7922563 CAGCCTGAGGATTTGATGGGGTGTGGAAAAGTCAGTTTCTTGATCTTCACTGAGCCAGTGAACTAACTGCTT-GAGATTGAAATGACCAAAGCCTTAGCATCCTCTGCGTGGGGC-TTTTTTGGTTTTCCT i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 840153 128 - 1116856 TAGCTGGAGGATTTGGTGAGGTGTAGAAAAGTGA-TCCTTTTACCCTCAGTGAACTACTGAGCTGAGTCTTT-GGGGCTGAAATGATCTCAGCCTTGGTATTATTTATTTGGGGC-TTTCTTGGTTCTTCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6721551 335 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I a score=732686.000000 s hg38.chr12_KI270834v1_alt 72682 56 + 119498 TGAAGCTGTTTCAAGGTTCTTTCTTGGGCCCCTTCCCTCGGTCTTCTTGGCCGAGC s panTro5.chr12 127358687 56 + 137163284 TGAAGCTGTTTCAAGGTTCTTTCTTGGGCCCCTTCCCTCGGTCTTCTTGGCCGAGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125709731 56 + 135337776 TGAAGCTGTTTCAAGGTTCTTTCTTGGGCCCCTTCCCTCGGTCTTCTTGGCCGAGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8223096 56 - 8369578 TGAAGCTGTTTCAAGGTTCTTTCTTGGGCCCCTTCCCTCGGTCTTCTTGGCCGAGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97881383 56 + 106955855 CGAAGCTGTTTCAAGGTTCTTTCTTGGGCCCCTTCCCTCGGTCTTCCTGGCCGAGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123996478 56 + 133663169 TGAAGCTGTTTCAAGGTTCTTTCTTGGGCTCCTTCCCTCGGTCTTGCTGGCCAAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128244579 56 + 137757926 TGAAGCTGTTTCAAGGTTCTTTCTTGGGCTCCTTCCCTCGGTCTTCCTGGCCAAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10643159 56 - 16319837 TGAAGCTGTTTCAAGGTTCTTTCTTGGGCTCCTTCCCTCGGTCTTCCTGGCCAAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12266832 56 + 20526591 TGAAGCTGTTTCAAGGTTCTTTCTTGGGCTCCTTCCCTCGGTCTTCCTGGCCAAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119238598 56 + 128539186 TGAAGCTGTTTCAAGGTTCTTTCTTGGGCTCCTTCCCTCAGTCTTCCTGGCCAAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 580695 56 + 6255621 TGAAGCTGTTTCAAGGTTCTTTCTTGGGCTCCTTCCCTCGGTCTTCCTGGCCAAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4616066 56 - 8658521 TGAAGCTGTTTCAAGGTTCTTTCTTGAGCTCCTTCCCTCGGTCTTCCTGGCCAAGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114816166 56 + 124281992 TGAAGCTGTTTCAAGGTTCTTCCTTGGGCCGCTTCCCTCGGTCTTTGTGGCTAAGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 460770 55 - 9212255 TGAAGCTGTTTCAAGGTTCTTCTTTGGGCC-CTTCCCTCGGTCTTCCTGGCCAAGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2875133 56 + 4466143 TGAAGCTGTTTCAAGGTTCTTCCTTGGGCCCCTTCCCTTGGTCTTCCTGGCCGAGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1582350 56 + 5364348 CGAAGCTGTTTCAAGGTTCTTCCTTCGGCCCCTTCCCTCGGTCTTCCTGGCCACGC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6721886 56 - 9870158 TGAAGCTGTTTCCAGGTTCTCTCTTGGGCCCCTGCTCCTGGTCTTCCTGGCTGAGC i proCoq1.NW_012154285v1 I 335 I 731 s otoGar3.GL873618 4306978 56 + 7922563 TTAAGCTATTTCAAGGCTCCCTCTTGGGCCGCTGCACTTGGTGTTCCTGGCTGAGC i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 840281 56 - 1116856 TGAAGCTTCCTGCAAGTTCTTTCTTGGGTCCCTTCCTTTGATCTTCCTGGCTTATT i dasNov3.JH568189 C 0 I 2 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e canFam3.chr26 33160646 678 - 38964690 I a score=8409304.000000 s hg38.chr12_KI270834v1_alt 72738 773 + 119498 CTCTGTG-TCACCTG-CACTGTCCTGCTCTTGACGACTCTACCCTCTCGC-GATGCCTGGCACAGGACGGCTCCTGCAGCCCACAGCTCTGTGCCTGGCCTCTAAGCCTCCTCTCTAGGTCTTTGGGCCAGTGGCTTC-------------------------------T-----------GATGTGTACCCTCCCCAGCTTGTTCCCAGATTCCTGCAGATGCCGCTCAACCTGCCTGCCTCT--TCCTTCTCCTGCTGGTCCGTGTTCGTGTTGCTGCTAAGTGTCATCTCGGTTCAGTTCCTTTGTCATTGCACCCGGCCCTGtgcacaggatccatttgtcatcactctggcaacagca-ccttaacttggtgttggc--aaactg--------cctctccccga--ctcccagtgcctgccatcaggatgggcttattctaaccctGAC-AGACCAATTAGATG-TTCTCTGGGACTGCACATTTTGAATCAGCCAATATAAAGACTGAAGATTATTTGTGTTCATTCATTGCACAGCAGCGCCGTGAAGAGAC--TGCATTCAGTGCCCGAGCCCAGATCCCTGAGGCGCCTCTAGTTTATGTGTTTCAGCATCTTCCATGtctgtgagctaccatatcttcttaaaacaatttcacgtttttcttaactcgaccatcattagcttctgttgcttgcaaccaaagcaacttaatcgataG-ATATCCTTTCCCAGGAATTTGTGGCATATCCCTGCTGCCTGTTTTGATGCTGAGTCCTCACTGTGGCCGTGAAGGGTCCC-ATCAATCCCTCTATGTCATCTTGCCTACCTA s panTro5.chr12 127358743 773 + 137163284 CTCTGTG-TCACCTG-CACTGTCCTGCTCTTGACGACTCTACCCTCTCGC-GATGCCTGGCACAGGACAGCTCCTGCAGCCCACAGCTCTGTGCCTGGCCTCTAAGCCTCCTCTCTAGGTCTTTGGGCCAGTGGCTTC-------------------------------T-----------GATGTGTACCCTCCCCAGCTCGTTCCCAGATTCCTGCAGATGCCGCTCAACCTGCCTGCCTCT--TCCTTTTCCTGCTGGTCCGTGTTCGTGTTGCTGCTAAGTGTCATCTCGGCTCAGTTCCTTTGTCATTGCACCCGGCCCTGtgcacaggatccatttgtcatcactctggcaacagca-ccttaacttggtgttggc--aaactg--------cctctccccga--ctcccagtgcctgccatcaggatgggcttattctaaccctGAC-AGACCAATTAGATG-TTCTCTGGGACTGCACATTTTGAATCAGCCAATATAAAGACTGAAGATTATTTGTGTTCATTCATTGCACAGCAGCGCTGTGAAGAGAC--TGCATTCAGTGCCCGAGCCCAGATCCCTGAGGCGCCTCTAGTTTATGTGTTTCAGCACCTTCCATGtctgtgagctaccatatcttcttaaaacaatttcacgtttttcttaacttgaccatcattagcttctgttgcttgcaaccaaagcaacttaatcgataG-ATATCCTTTCCCAGGAATTTGTGGCATATCCCTGCTGCCTGTTTTGATGCTGAGTCCTCACTGTGGCCGTGAAGGGTCCC-ATCAATCCCTCTGTGTCATCTTGCCTACCTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125709787 773 + 135337776 CTCTGTG-TCACCTG-CACTGTCCTGCTCTTGACGACTCTACCCTCTCGC-GATGCCTGGCACAGGACAGCTCCTGCAGCCCACAGCTCTGTGCCTGGCCTCTAAGCCTCCTCTCTAGGTCTTTGGGCCAGTGGCTTC-------------------------------T-----------GATGTGTACCCTCCCCAGCTCGTTCCCAGATTCCTGCAGATGCCGCTCAACCTGCCTGCCTCT--TCCTTCTCCTGCTGGTCCGTGTTCGTGTTGCTGCTAAGTGTCATCTCGGTTCAGTTCCTTTGTCATTGCACCCGGCCCTGtgcacaggatccatttgtcatcactctggcaacagca-ccttaacttggtgttggc--aaactg--------cctctccccga--ctcccagtgcctgccatcaggatgggcttattctaaccctGAC-AGACCAATTAGATG-TTCTCTGGGACTGCACATTTTGAATCAGCCAATATAAAGACTGAAGATTATTTGTGTTCATTCATTGCACAGCAGCGCTGTGAAGAGAC--TGCATTCAGTGCCCGAGCCCAGATCCCTGAGGCGCCTCTAGTTTATGTGTTTCAGCACCTTCCATGtctgtgagctaccatatcttcttaaaacaatttcacgtttttcttaacttgaccatcattagcttctgttgcttgcaaccaaagcaacttaatcgataG-ATATCCTTTCCCAGGAATTTGTGGCATATCCCTGCTGCCTGTTTTGATGCTGAGTCCTCACTGTGGCCGTGAAGGGTCCC-ATCAATCCCTCTGTGTCATCTTGCCTACCTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8223152 773 - 8369578 CTCTGTG-TTACCTG-CACTGTCCTGCTTTTGACGACTCTACCCTCTCGC-GATGCCTGGCACAGGACAGCTCCTGCAGCCCACAGCTCTGTGCCTGGCCTCTAAGCCTCCTCTCTAGGTCTTTGGGCCAGTGGCTTC-------------------------------T-----------GATGTGTACCCTCCCCAGCTCGTTCCCAGATTCCTGCAGATGCCACTCAACCTGCCTGCCTCT--TCCTTCTCCTGCTGGTCCGTGTTTGTGTTGCTGCTAAGTGTCACCTCGGTTCAGTTCCTTTGTCACTGCACCCGGCCCTGtgcacaggatccatttgttatcactctggcaacggca-cctcaacttggtgttggc--aaactg--------cctctccccga--ctcccagtgcctgccatcaggatgggcttattctaaccctGAC-AGACCAATTAGATG-TTCTCTGGGACTGCACATTTTGAATCAGCCAATATAAAGACTGAAGATTATTTGTGTTCATTCATTGCACAGCAGCGCTGTGAAGAGAC--TGCATTCAGTGCCCGAGCCCAGATCCGTGAGGTGCCTCTAGTTTATGTGTTTCAGCATCTTCCATGtctgtgagctaccatatcttcttaaaacaatttcacgtttttcttaactcgaccatcattagcttctgttgcttgcaaccaaagcaacttaatcgataG-ATATCCTTTTCCAGGAATTTGTGGCATATCCCTGCTGCCTGTTTTGATGCTGAGTCCTCACTGTGGCCGTGAAGGGTCCC-ATCAGTCCCTCTATGTCATCTTGCCTACCTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97881439 775 + 106955855 CTCAGTG-TCACCTG-CACTGTCCTGCTCTTGACGACTCTACCCTCTCGC-GATGCCTGGCACAGGACAGCTCCTGCAGCCCACAGCTCTGTGCCTGACCTCTGACCCTCCTCTCTAGGTCTTTGGGCCACTGGCTTC-------------------------------T-----------GAAGTGTACCCTCCCCAGCTCATTCCCAGATTCCTGCAGATGCCACTCAACCTTCCTGCCTCT--TCCCTCTCCTGCTGGTCTGTGTTTGTGTTGCTGCTAAGTGTCATCTCGGTTCAGTTCCTTTGTCATTGCACCCGGCCTTGTGCACAGGATCCATTTGTCATCACTCTGGCAACAGCA-CCTTAACCTGGTGTTGGCAAAAACTG--------CCTCTCCCCGA--CTCCCAGTGCTTGCCATCAGGATGGGCTTCTTCTAACCCTGGC-AGACCAATTAGATG-TTCTCTGGGACTGCACATTTTGAATCAGCCAGTATAAAGACTGAAGATTACTTGTGTTCATTTATTGCATGGCAGCGCTGTGAAGAGAC--TGCATTCAGTGCCCGAGCCCAGATCCCTGAGGCGCCGCTAGTTTATGTGTTTCAGCATCTTCCATGtctgtgagctaccataccttcttataacaatttcacatttttcttaactcgaccatcattagcttctgttgcttgcaaccaaAGCAACTTAAACGATAG-ATATCCTTTCCCAGGAATTTGTGGCAACTCCCTGCTGCCTGTTTTGATGCTGAGTCCTCACTGTGACCGTGAAGGGTTTC-ATCTACCCCTCTATGTCATCTTGCCTACCTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123996534 772 + 133663169 CTTTGTG-TCACCTG-CACTGTCCTGCTCTTGACGACTCTACCCTCTTGC-GATGCCTGGCACAGGACAGCTCCTGGAGCCCACAGCTCTGTGCCTGGCCTCTCACCCTCCTCTCTAGGTCTTTGGGCCACTGGTTTC-------------------------------T-----------GATGTGTACCCTCCCCAGCTCATTCTCAGATTCCTGCAGATGCTACTCGACCTGCCTGCCTCT--TCCTTCTGCTGCTGGTCTGTGTTTGTGTTGCTG-TAGGTGTCATCTCCGTTCAGTTCCTTTGTCATTGCACCCGGCCTTGtgcacgggatccatttgtcatcactctggcaacagca-ccctaacttggtgttggc--aaactg--------cctctccccaa--ctcccagtgcctgccatcaggatgggattattctaaccctGGC-AGACCAATTAGAAG-TTATCTGGGACTGCACATTTTCAGTCAGCCAACATAAAGACTGAAGATTATTTGTGTTCATTTATTGCATGGCAGTGCTGTGAAGAGAC--TGCATTCAGTGACTGAGCCCAGATCCTTGAGGTGACCCTGGTTTATGTGTTTCAGCATCTTCCATGtccgtgagctaccatgtcttcttataacaatttcacatttttcttaactcgaccattgttagcttctgttgcttgcaaccaaagcaacttaatcgataG-ATATACTTTCCTGGGAATTTGTGGCAACTCCCTGCTGCCTGTTTTGATGCTGAGTCCTCATTGTGGCCATGAAGGGTCCC-ATCAATCCCTCTATGTCATCTTGCCCACCTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128244635 772 + 137757926 CTCTGTG-TCACCTG-CACTGTCCTGCTCTTGACGACTCTACCCTCTTGC-GATGCCTGGCACAGGACAGCTCCTGGAGCCCACAGCTCTGTGCCTGGCCTCTCACCCTCCTCTCTAGGTCTTTGGGCCACTGGTTTC-------------------------------T-----------GATGTGTACCCTCCCCAGCTCATTCTCAGATTCCTGCAGATGCTACTCGACCTGCCTGCCTCT--TCCTTCTGCTGCTGGTGTGTGTTTGTGTTGCTG-TAGGTGTCATCTCCGTTCAGTTCCTTTGTCATTGCACCCGGCCTTGtgcacgggatccatttgtcatcactctggcaacagca-ccctaacttggtgttggc--aaactg--------cctctccccaa--ctcccagtgcctgccatcaggatgggattattctaaccctGGC-AGACCAATTAGAAG-TTATCTGGGACTGCACATTTTCAGTCAGCCAACATAAAGACTGAAGATTATTTGTGTTCATTTATTGCATGGCAGTGCTGTGAAGAGAC--TGCATTCAGTGACTGAGCCCAGATCCCTGAGGTGACCCTGGTTTATGTGTTTCAGCATCTTCCATGtccatgagctaccatgtcttcttataacaatttcacatttttcttaactcgaccattgttagcttctgttgcttgcaaccaaagcaacttaatcgataG-ATATACTTCCCTGGGAATTTGTGGCAACTCCCTGCTGCCTGTTTTGATGCTGAGTCCTCATTGTGGCCATGAAGGGTCCC-ATCAATCCCTCTATGTCATCTTGCCCACCTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10643215 773 - 16319837 CTCTGTG-TCACCTG-CACTGTCCTGCTCTTGACGACTCTACCCTCTTGC-GATGCCTGGCACAGGACAGCTCCTGGAGCCCACAGCTCTGTGCCTGGCCTCTCACCCTCCTCTCTAGGTCTTTGGGCCACTGGTTTC-------------------------------T-----------GATGTGTACCCTCCCCAGCTCATTCTCAGATTCCTGCAGATGCTACTCGACCTGCCTGCCTCT--TCCTTCTGCTGCTGGTCTGTGTTTGTGTTGCTGCTAGGTGTCATCTCCGTTCAGTTCCTTTGTCATTGCACCCGGCCTTGtgcacgggatccatttgtcatcactctggcaacagca-ccctaacttggtgttggc--aaactg--------cctctccccaa--ctcccagtgcctgccatcaggatgggattattctaaccctGGC-AGACCAATTAGAAG-TTATCTTGGACTGCACATTTTCAGTCAGCCAACATAAAGACTGAAGATTATTTGTGTTCATTTATTGCATGGCAGTGCTGTGAAGAGAC--TGCATTCAGTGACTGAGCCCAGATCCCTGAGGTGACCCTGGTTTATGTGTTTCAGCATCTTCCAAGtccgtgagctaccatgtcttcttataacaatttcacatttttcttaactcaaccattgttagcttctgttgcttgcaaccaaagcaacttaatcgataG-ATATACTTTCCTGGGAATTTGTGGCAACTCCCTGCTGCCTGTTTTGATGCTGAGTCCTCATTGTGGCCATGAAGGGTCCC-ATCAATCCCTCTATGTCATCTTGCCCACCTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12266888 770 + 20526591 CTCTGTG-TCACCTG-CACTGTCCTGCTCTTGACGACTCTACCCTCTTGT-GATGCCTGGCACAGGACAGCTCCTGGAGCCCACAGCTCTGTGCCTGGCCTCTCACCCTCCTCTCTAGGTCTTTGGGCCACTGGTTTC-------------------------------T-----------GATGTGTACCCGCCCCAGCTCATTCTCAGATTCCTGCAGATGCTACTCGACCTGCCTGCCTCT--TCCTTCTTCTGCTGGTCTGTGTTTGTGTTGCTGCTAAGTGTCATCTCCGTTCAGTTCCTTTGTCATTGCACCCGGCCTTGtgcacaggatccatttgtcatcactctggcaacagca-ccctaacttggtgttggc--aaactg--------cctctccccaa--ctcccagtgcctgccatcaggatgggcttattctaaccctGGC-AGACCAATTAGAAG-TTATCTGGGACTGCACATTTTGAGTCAGCCAAC---AAGACTGAAGATTATTTGAGTTCATATATTGCATGGCAGCGCTGTGAAGAGAC--TGCATTCAGTGACTGAGCCCAGATCCCCGAGGCGCCCCTGGTTTATGTGTTTCAGCATCTTCCATGtccgtgagctaccgtgtcttcttataacaatttcacatttttcttaactcgaccattgttagcttctgttgcttgcaaccaaagcaacttaatcgataG-ATATCCTTTCCCAGGAATCTGTGGCAACTCCCTGCTGCCTGTTTTGATGCTGAGTCCTCATTGTGGCCATGAAGGGTCCC-ATTAATTCCTCTATGTCATCTTGCCCACCTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119238654 773 + 128539186 CTGTGTG-TCACCTG-CACTGTCCTGCTCTTGACGACTCTACCCTCTTGC-GATGCCTGGCACAGGACAGCTCCTGGAGCCCACAGCTCTGTGCCTGGCCTCTCACCCTCCTCTCTAGGTCTTTGGGCCACTGGTTTC-------------------------------T-----------GATGTGTGCCCTCCCCAGCTCATTCTCAGATTCCTGCAGATGCTACTTGACCTGCCTGCCTCT--TCCTTCTCCTGCTGGTCTGTGCTTGTGTTGCTGCTAGGTGTCATCTCGGTTCAGTTCCTTTGTCATTGCACCCGGCCCTGtgcacaggatccatttgtcatcactctggcaacagca-ccctaacttggtgttggc--aaactg--------cctctccccaa--ctcccagtgcctgccatcaggatgggcttattctaaccctGGC-AGACCAATTAGAAG-TTATCTGGGACTGCACATTTTGAGTCAGCCAACATAAAGACTGAAGATTATTTGTGTTCATTTATTGCATGGCAGTGCTGTGAAGAGAC--TGCATTCAGTGACCGTGCCCAGATCCCTGAGGCGCCCCTAGTTTACGTGTTTCAGCATCTTCCATGtccgtgagctaccatgtcttcttataacaatttcacatttttcttaactcgaccattgttagcttctgttgcttgcaaccaaagcaacttaatcgataG-ATATCCTTTCCCAGGAATTTGTGGCAACCCCCTGCTGCCTGTTTTGATGCTGAGTCCTCATTGTGGCCATGAAGGGTCCC-ATCAATCCCTCTATGTCATCTTGCCCACCTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 580751 770 + 6255621 CTCTGTG-TCACCTG-CACTGTCCTGCTCTTGATGACTCTACCCTCTTGT-GATGCCTGGCACAGGACAGCTCCTGGAGCCCACAGCTCTGTGCCTGGCCTCTCACCCTCCTCTCTAGGTCTTTGGGCCACTGGTTTC-------------------------------T-----------GATGTGTACCCGCCCCAGCTCATTCTCAGATTCCTGCAGATGCTACTCGACCTGCCTGCCTCT--TCCTTCTTCTGCTGGTCTGTGTTTGTGTTGCTGCTAAGTGTCATCTCCGTTCAGTTCCTTTGTCATTGCACCCGGCCTTGtgcacaggatccatttgtcatcactctggcaacagca-ccctaacttggtgttggc--aaactg--------cctctccccaa--ctcccagtgcctgccatcaggatgggcttattctaaccctGGC-AGACCAATTAGAAG-TTATCTGGGACTGCACATTTTGAGTCAGCCAAC---AAGACTGAAGATTATTTGAGTTCATTTATTGCATGGCAGCGCTGTGAAGAGAC--TGCATTCAGTGACTAAGCCCAGATCCCTGAGGCGCCCCTGGTTTATGTGTTTCAGCATCTTCCATGtccgtgagctaccgtgtcttcttataacaatttcacatttttcttaactcgaccattgttagcttctgttgcttgcaaccaaagcaacttaatcgataG-ATATCCTTTCCCAGGAATCTGTGGCAACTCCCTGCTGCCTGTTTTGATGCTGAGTCCTCATTGTGGCCATGAAGGGTCCC-ATCAATTCCTCTATGTCATCTTGCCCACCTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4616122 761 - 8658521 CTCTGTG-TCACCTG-CACTGTCCTGCTCTTGACGACTCTACCCTCCTGC-GATGCCAGGCACAGGACAGCTCCTGGAGCCCACAGCTCTGTGCCTGGCCTCTAATCCTCTTCTCTAGGTCTTTGGGCCACTGGTTTC-------------------------------T-----------GATGTGTACCCTCCCCAGCTCATTCTCAGATTCCTGCAGATGCTACTCGACCTGCCTGCCTCT--TGCTTCTCCTGCTGATCTGTGTTTGTGTTGC---TAAGTGTCATCTTGGTTCAGTTTCTTTGTCATGACACCTGGCCCTGtgcacaggatccgtttgtcatcactctggcaccagca-ccctaactttgtgttggc--aaactg--------cctctccccaa--ctcccagtgcctgccatccggatgggcttattctaaccctGGC-AGACCAATTAGAAG-TTATCTGGGACTGCACATTTTGAGTCAGCCAACATAAAGACTGAAGATTATTTGTGTTCATTTATTGCATGGCAGTGCTGTGAAGAGAC--TGCATTCAGTGACCGAGCCTAGATCCCCGAGGCGCCCCTAGTTTATGTGTTTCAGCATCTTCCATGtccgtgagctaccatgtcttcttataacaatttcacatttttcttaactcgaccgttgttagcttctgttgcttgcaaccaaagcaacttaatcgataG-ATATCCTTTCCCAGGAATTTGTGGCAACTCTCTGCTGCCTGTTTTGATGCTGAGTCCTCACTGTGGCCAT---------C-ATCAATCCCTCTATGTCATCTTGCCCACCTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114816222 765 + 124281992 TGCTGTG-TCACCTG-TGCTGTCCTGCTCTTGACGACTCTATGCTCTCAC-GATGTCT--CTCAGGACAGCTCCTGGAGCCCACAGCTCCGTGCCTGGCCTCTAACCCTCCTCTCTAGGTCTTTGGGCTCCGGGCTTC-------------------------------T-----------GATGTGTGCCCTCCCCAGCCCATTCCCAGATTCCTG-AGATGCCCGTCAACCTGCCTGCCTCT--TCCTTCTCCTGCTGGTCTGTGTTGGTGTTGCCGCTAAGTGTCATCTCGGTTCAGTTCCTGGGTCATTGCACCCGGCCCTGtgcacaggatcaatttgtcattactctggcaacagca-ccctaacttggtgttggc--aaactg--------cctct-cccga--ctcccagtgcctgccatcaggatgggcttattccaaccctGGT-GGACTAGTGAGGTG-TTCTCTGGGACTGCACATTTTGAATCAGCCAGCATAGAGACTGAAGAGAATGTATGTGCATTTACTGCATGGCAGCGCTGTGAAGAGAT--TACATTTGGTGCCTGAGCCCAGATCCTTGAGGTGCCCCCAGCTGATATGTTTCAGCATCTTCCA----TGTGAGCTACCGTATCTTCTTACAGCAATTTCACATCGTTCATAACTCGACCATTGTTAGCTTCTGTTGCTTGCAACCAAAGCAACTTAATCCATTG-AGCTCCTTTCCTAGGAATTTGTGGCAACTCCCTGCTGCCTGTTTTGATGCCGAGGCCTCAGTGTGGCCATGAAGGATCCC-ATCAGTTCCTCCGTGTCGTCTTGCCTACCTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 460825 769 - 9212255 CGCCATG-TCACCTG-TGGTGTCCTGCTCTTGACGACTCTACCCTCTCAC-GATGCCT--CTCAGGACAGCTCCTGGAGCCCACAGCTCTGTGCCTGGCCTCTAACCCTCCTCTCTAGGTCTTTGGGCTCCGGGCTTC-------------------------------T-----------GATGGGTGCCTTCCCCAGCCCATTCCCGGATTCCTGCAGATGCCCGTCAACCTGCCTGCCTCC--TCCTTCTCCTGCTGGTCTGTGTTACTGTTGCTGCTAAGTGTCATCTCGGTTCAGTTCCTGGGTCATTGCACCCGGACCTGTGCACGGGATCAATTTGTCATCACTCTGGCAACAGCA-CCCTAACTTGGTGTTGGC--AAACTG--------CCTCT-CCCGA--CTCCCAGTGCCTGCCATCAGGATGGGCTTATTCCAACGCTGCT-GGACCAGTTAGGTG-TTCTCTGGGACTGCACATTTTGAAGCAGCCAGCATAGAGACTGAAGATAATGTATGTTCATTTACCGCATGGCAGCGCTGTGAAGAGAC--TACATTCGGTGCCTGAGCCCACATCCCTGAGGCGCCCCCAGTTTAGGTGTTT-AGCATCTTCCATGtctgtgagctaccgtatcttcttacagcagtttcacatcgttcttaactcgaccatcgttagcttctgttgcttgcaaccaaAGCAATGTAATCCGTCG-AGATCCTTTCCCAGGAATTTGTGGCAACTCCCCGCTGCCTGTTTTGATGCCAAGTCCTCAGTGTGGCCATGAAGGGTCCC-GTCAGTCCCTCCGTGTCATCTTGCCTACCTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2875189 762 + 4466143 ---------CACCTG-TGCTGTCCTGCTCTTGAACACTCTACCTCCTCAT-GATGCCT--CTCAGGACAGCTCCTGGAGCCCACACCTCTGTGCCTGGCCTCTAACCCTCCTCTCTAGATCTTTGGGCTCCGGGCTTC-------------------------------T-----------GATGTGTGCCCTCCCCAGCCCATTCCCAGATTCCTGCAGATGGCCGTCAACCTGCCTGGCCCT--TCCTTCTCCTGCTGGTCTGTGTTAGTGTTGCTGCTAAGTGTCATCTCGGTTCAGTTCCTGGGTCATTGCACCCGGCCCTGtgcacaggatcaatttgtcatcactctggtaacggca-ccctaacttggtgttggc--aaactg--------cctct-cccga--ctcccagtgcctgccatcaggatgggcttattccaaccctGGT-GGACCAGTTAGGTG-TTCTCTGGGACTGCACATTTTGAATCAGCCAGCATAGAGACTGAAGATAATGTATGTTCATTTACTGCATGGCAGCACTGTGAAGAGAC--TACATTCGGTGCCCGAGCCCAGATCCCTGAGGCGCCCCCAGTTGATGTGTTTCAGCATCTTCCATGtctgtgagctaccatatcttcttacagcaattacacatcgttcttaactcgaccatcgttagcttctgttgcttgcaaccaaAGCAACTTAATCCATCG-AGATCCTTTCCCAGGAGTTTGTGGCAACTCCCTGCTGCCTGTTTTGATGCTGAGGCCTCAGTGTGGCCATGAAGGGTCCC-ATCAGTCCCTCCTTGTCATCTTGCCTACCCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1582406 750 + 5364348 CGCTGTG-TCACCTG-TGCTGTTCTGCTCTTGACAACTCTGCCCTCTCAC-GATGCCT--CTCAGGACAGCTCC----------------GTGCCTGGCCTCTAACCCTCCTCTCTAGGTCTTTGGGCTCCGGGCTTC-------------------------------T-----------GATGTGTGCCCTCCCTAGCCCATTCCCAGATTCCTGCAGATGCCCGTCAACCTGCCTGCCTCT--TCCTTCTCCTGCTGGTC--TGTTAGTGTTGCTGCTAAGTGTCATCTCGGTTCAGTTCCTGGGTCATTGCACCCGGCCCTGtgcacaggatcaatttgtcatcactctggcaacagca-ccctaacttggtgttggc--aaactg--------cctct-cccga--ctcccagtgcctgccatcaggatgggcttattccaaccctGGT-GGACCAGTTAGGTG-TTCTCTGGGACTGCACATTTTCAATCAGCCAGCAT--AGACTGAAGATAATGTATGTTCATTTACTGCATGGCAGCGCTGTAAAGAGAC--TACATTCGGTGCCTGAGCCCAGATCCCCAAGGCGCCCCCAGTTTATGTGTTTCAGCATCTTCCATGTCGGTGAGCTACCATATCTTCTTACAACAATTTCACATCGTTCGTAACTCCACCATCGTTAGCTTCCGTTGCTTGCAACCAAAGCAACTTAATCCGTCG-AGCTCCTTTCCCAGGAATTTGTGGCAACTCCCTGCTGCCTGTTTTGATGCCGAGGCCTCAGTGTGGCCGTGAAGGGTCCC-GTCAGTCCCTCCGTGTCATCTTGCCTACCTC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4307034 799 + 7922563 AGCTGTGCTTACCAG-TACTGTCCCACTGTGGAGGTGTCTGGCTCTCACA-GATACCTCACAGCAGATAGCTCCTCTAG-GTGTACCTTTGTGCCTTACCTCTCACCCTTCTCTC-AAGTCTGTGGGCTTCTGTTTTCTGTCATTACTTTATATCATCATGATTATATAT-----------GATTTGTGCCTGGTGCAGCTAATCCCCAGATTCTTTCAGAAGCCATCTGATCTGCCTGCCTCTCATCCTACTCCTTCTAGTTCATAC--ATATTGCTTCTAAATGTAATCTTGGTTTACTTCCATTGTAACTGCACCAGGCCATCTGCACAGGATACCTTTTCTACCACTCTGGTGATAGTGCCCCCAATTTGGCTTTGGC--AAACTG--------CCTCTCCCCAG---TCCCCCTGTGTGCCATTGGGATGGACTTACTCCAACCCTGGC-AG-CCAATTAGATGATTCTCCTGGCCTGCACATTTTGAATCAGCCAACAT-GAGGCGCAAGATAATTTGTTTTCATTTATCCCATGTCAGCCCTGGGAAGAGACTGTGCATCTGGTGTCTAAGCCCAGATCCCTGGAGCTCCCCCA-TTTATGTCTTTCAGCATCTTCTATttctatgagctgccctgtc-tcctacaacagattctcatttgtcttaacttgacca---ttagtttctgttgcttgcaaccaaagcaacttaaccaGTAG-TGAT-TTTTCCCTGTAATTCCTGGCAACTCCCTGGTGCCTGTTTTAATGCTGAATGCTCAGTGAGGCCAGGAAAGGTCCCTGTCAACCCCTCTGTGTCATCTGGCCCAGCTC i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 840339 759 - 1116856 TTATGCT-TCTCTTGATTCTCTTATGCCCTTGAGAAATTGTATTTCTCACAGGTACCGCATACAGGAGAACTCTT-CAGTCCCCAGCTCTGTT-----CCTCTAACTATTCTCTCTAGGTCTTCAGGTTGGTGCTTTC-------------------------------CATCATTTTTCAAAATTTTGCCCTCACCTGCTCATTCTTAGGTGGCTGCAGCAGCCACTCAGCCTTTCTGCCTC---TGGTTCTTGTTCTATACCATGTTTGTGTTGTTTC--------------GTTCGATTCCCTTTTCATCATGTCAGGTCCCATGTGCAGGATCCATTTTTCATTAC--------------TCCTAACTTGGCTTTGGA--AGGCTGTAccccacccccacccccacccccCCAGTCTATGCCCTTGGGATGGGCTTATTTCAACCCTCACTGGACTAATTAGATA-TTATCCTGGACTTCACATTTTGAATCAGTCAACATAAAGAATGAAGAAAACAAAAGTTAATT-ATCTCATGCCAGTGCTGTTAAGAGAC--TGCAATAAGTTCCCAAGTCCAGATCCCTGGAGAGCCTCTGATTTCTGTCCTTTGACGTCTTCagtttctatgagctatcctttctccttgccataaattcattttatgcttagattggccattgttgttttctgttgcttgcaaccaaagaaacttaactgataATAGAGCCCAATCCAGTAATCTATCACAACTCCTT----TCTATTTTAATGCTGAATACTCAGC-TGGCTTTGAAAGGTCCCTGTCACTCCTTCTGGGTCATGTCACCTCTCTC i dasNov3.JH568189 I 2 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6721942 731 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I a score=483108.000000 s hg38.chr12_KI270834v1_alt 73511 43 + 119498 ATTTCTCATGACACCCTGTCGCCTGCTCACAGCATCACTTCTT s panTro5.chr12 127359516 43 + 137163284 ATTTCTCATGACACCCTGTCGCCTGCTCACAGCATCACTTCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125710560 43 + 135337776 ATTTCTCATGACACCCTGTCGCCTGCTCACAGCATCACTTCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8223925 43 - 8369578 ATTTCTCATGACACCCTGTCGCCTGCTCACAGCATCACTTCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97882214 43 + 106955855 ATTTCCCATGACACCCTGTCGCCTGCTCACTGCATCACTTTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123997306 43 + 133663169 ATTTCCCATGATACCCTGTTGCCTGCTCACAGCATCACCTCTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128245407 43 + 137757926 ATTTCCCATGACACCCTGTTGCCTGCTCACAGCATCACCTCTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10643988 43 - 16319837 ATTTCCCATGACACCCTGTTGCCTGCTCACAGCATCACCTCTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12267658 43 + 20526591 ATTTCCCATGACACCCTGTCGCCTGCTCACAGCATCACCTCTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119239427 43 + 128539186 ATTTCCCATGACACCCTGTCACCTGCTCACAGCATCACCTCTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 581521 43 + 6255621 ATTTCCCATGACACCCTGTCGCCTGCTCACAGCATCACCTCTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4616883 43 - 8658521 ATTTCCCATGACACCCTGTCGCCTGCTCACAGCATCACCTCTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114816987 42 + 124281992 ATTTCTCATGACA-CCTGCCGCCTGCGCGCAGCATCCCTTCTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 461594 42 - 9212255 ATTTCTCATGACA-CCTGCCACCTGCACACAGCGTCCCTTCTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2875951 42 + 4466143 ATTTCTCATGACA-CCTGCCGCCTGCGCACAGCATCCCTTCTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1583156 42 + 5364348 ATTTCTCATGACA-CCTGCTGCCTGCGTACAGCATCCTTTCTT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6722673 43 - 9870158 ATTTCTCAGGACGCCCTGTCCCCTGCTCGCAGTATCATTCCTT i proCoq1.NW_012154285v1 I 731 C 0 s otoGar3.GL873618 4307833 42 + 7922563 ATTCCTCAGGACA-CCTGTTTCATGCTTACAATGTTATTTCTT i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 841098 34 - 1116856 ACTTCTTGTGACC--------CCTCCCCA-AACATCATTTTTT i dasNov3.JH568189 C 0 I 1362 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e canFam3.chr26 33160646 678 - 38964690 I a score=97326.000000 s hg38.chr12_KI270834v1_alt 73554 6 + 119498 CATGCC s panTro5.chr12 127359559 6 + 137163284 CATGCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125710603 6 + 135337776 CATGCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8223968 6 - 8369578 CATGCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97882257 6 + 106955855 CATGCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123997349 6 + 133663169 CATGCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128245450 6 + 137757926 CATGCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10644031 6 - 16319837 CATGCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12267701 6 + 20526591 CATGCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119239470 6 + 128539186 CATGCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 581564 6 + 6255621 CATGCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4616926 6 - 8658521 CATGCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114817029 6 + 124281992 CATGCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 461636 6 - 9212255 CATGCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2875993 6 + 4466143 CGTGCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1583198 6 + 5364348 CATGCC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6722716 6 - 9870158 CATGCC i proCoq1.NW_012154285v1 C 0 I 354 s otoGar3.GL873618 4307875 6 + 7922563 CATGCC i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 842494 6 - 1116856 CATGCC i dasNov3.JH568189 I 1362 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e canFam3.chr26 33160646 678 - 38964690 I a score=1883503.000000 s hg38.chr12_KI270834v1_alt 73560 173 + 119498 TGTGTGAGTCCTGCAGTAACTTGCT-CTTTCTCTCCCTTTGGTCTGCT--AAGAATATCCGTACCACTTCTTTCTTCCTGTCCATGTTTCTCC-TTCCAGAACTTTGATCAAATGCCTCATTCCCACATAGCTGCACTTTGCTTTGATCTGTCTTTTAAAAA-CTATATATTTCT--GGC s panTro5.chr12 127359565 173 + 137163284 TGTGTGAGTCCTGCAGTAACTTGCT-CTTTCTCTCCCTTTGGTCTGCT--AAGAATATCCATACCACTTCTTTCTTCCTGTCCATGTTTCTCC-TTCCAGAACTTTGATCAAATGCCTCATTCCCACATAGCTGCACTTTGCTTTGATCTGTCTTTTAAAAA-CTATATATTTCT--GGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125710609 173 + 135337776 TGTGTGAGTCCTGCAGTAACTTGCT-CTTTCTCTCCCTTTGGTCTGCT--AAGAATATCCGTACCACTTCTTTCTTCCTGTCCATGTTTCTCC-TTCCAGAACTTTGATCAAATGCCTCATTCCCACATAGCTGCACTTTGCTTTGATCTGTCTTTTAAAAA-CTATATATTTCT--GGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8223974 173 - 8369578 TGTGTGAGTCCTGCAGTAACTTGCT-CTTTCTCTCCCTTTGGTCTGCT--GAGAATATCCATACCACTTCTTTCTTCCTGTCCATGTTTCTCC-TTCCAGAACTTTGATCAAATGCCTCATTCCCACATAGCTGCACTTTGCTTTGATCTGTCTTTTAAAAA-CTATATATTTCT--GGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97882263 174 + 106955855 TGTGTGAGTCCTGCAGCATCTTGCT-CTTTCTCTCCCTTTGGTCTGCT--AAGAATATCCATACCACTTCTCTCTTCCTATCCATGTTTCTCCTTTCCGGAACTTTGATC-AATGCCTCATTCCCACATA-CTGCACTTTGCTTTGATCTGTCTTTTAAAAA-CTATTTATTTTCTGGGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123997355 173 + 133663169 CGTGTGAGTCCTGCAGTAATTTGCT-CTTTCTCTCCCTTCGGTCTGCT--GAGAATATCCATACCACGTCTCTCTTCCTATCTGTGTTTCTTC-TACCAGAACTTTGATCAAATGCCTTGTTCCCACATAGCTGCACTTTGCTTTGATCTGTCTTATAAAAA-CTATATATTTCT--GGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128245456 173 + 137757926 CGTGTGAGTCCTGCAGTAATTTGCT-CTTTCTCTCCCTTCGGTCTGCT--GAGAATATCCATACCACGTCTCTCTTCCTATCTGTGTTTCTTC-TACCAGAACTTTGATCAAATGCCTCGTTCCCACATAGCTGCACTTTGCTTTGATCTGTCTTATAAAAA-CTATATATTTCT--GGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10644037 173 - 16319837 CGTGTGAGTCCTGCAGTAATTTGCT-CTTTCTCTCCCTTCTGTCTGCT--GAGAATATCCATACCACGTCTCTCTTCCTATCTGTGTTTCTTC-TACCAGAACTTTGATCAAATGCCTCGTTCCCACATAGCTGCACTTTGCTTTGATCTGTCTTATAAAAA-CTATATATTTCT--GGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12267707 173 + 20526591 CGTGTGAGTCCTGCAGTAATTTGCT-CTTCCTCTCCCTTCGGTCTGCT--GAGAATATCCATACCACGTCTCTCTTCCTATCCGTGTTTCTTC-TACCAGAACTTTGATCAAATGCCTCGTTCCCACATAACTGCACTTTGCTTTGATCTGCCTTTTAAAAA-CTATATATTTCT--GGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119239476 173 + 128539186 CGTGTGAGTCCTGCAGTAATTTGCT-CTTTCTCTCCCTTCGGTCTGCT--GAGAATATCCATACCACGTCTCTCTTCCTATCCGTGTTTCTTC-TACCAGAACTTTGATCAAATGCCTCATTCCCACATAGCTGCACTTTGCTTTGATCTGTCTTTCAAAAA-CTATATATTTCT--GGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 581570 173 + 6255621 CGTGTGAGTCCTGCAGTAATTTGCT-CTTCCTCTCCCTTCGGTCTGCT--GAGAATATCCATACCACGTCTCTCTTCCTATCCGTGTTTCTTC-TACCAGAACTTTGATCAAATGCCTCGTTCCCACATAACTGCACTTTGCTTTGATCTGCCTTTTAAAAA-ATATATATTTCT--GGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4616932 173 - 8658521 CGTGTGAGTCCTGCAGTAATTTGCT-CTTTCTCTCCCTTCGGTCTGCT--GAGAATATCCATACCACATCTCTCTTCCTATCTGTGTTTCTTC-TACCAGAACTTTGATCAAATGCCTCATTCCCACATAGCTGCACTTTGCTTTGATCTGTCTTTTAAAAA-CGATATATTTCT--GGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114817035 172 + 124281992 TGCGTGACTCCTGCAGTAACTTGTT--TTTCTCTCCCTTTGCTCTGCT--AAGAATATCCACACCACTTCTCTCTTCCTATCCACGTTTCTTC-TTCCAGAACTTTGATCAAATGCCTCATTCCCACATAGCTACACTTTGCTTTGATCTGTCTTTTAAAAA-CTATACATTCCT--ggc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 461642 173 - 9212255 TGCGTGACTCCTGCAGTAACGTGTT-CTTTCTCTCCCTTTGCTCTGCT--GAGAATACCTATACCACTTCTCTCTTCCTAGCCGCGTTTCTTC-TTCCAGAACTTTGATCAAGTGCCTTATTCCCACATAGCTACACTTTGCTTTCATCTGTCTTTTAAAAG-CTATGTATTCCT--ggc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2875999 173 + 4466143 TGCGTGACTCCGGCAGTAACGTGTT-CTTTCTCTCCCTTTGCTCTGCT--AAGAATATCCATACCACTTCTCTCTTCCCATCCGTGTTTCTTC-TTCCAGAACTTTGATCAAATGCCTCATTCCCACATAGCTACACTTTGCTTTGATCTGCCTTTTAAAAA-CTATATATTCCT--ggc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1583204 174 + 5364348 TGCGTGACTCCTGCAGTAACATTTTTCTTTCTCTCCCTTTGCTCTGCT--AAGAAAATCCATACCGCTTCCCTCTTCCCATCCGCGTTTCTTC-TTCCAGAACTTTGATCAAATGCCTCATTCCCACATAGCTACACTTTGCTTTGATCTGTCTTTTAAAAA-CTATATATTCCT--ggc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4307881 147 + 7922563 --------------------------ATGGGACTCACTTTGCTTTGCTCAAAGAGTACTCTCTTC-CTTCTGTCTTCCTGGCTGTGTTTCTTC-TCCCAGAACCTTGATCAAATGCCTCATTCTTGCATAGCTTCTCTTTGCTATGAT---TCTTTTAAAAAGCTGTATTCTCCA--GTG i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 842500 175 - 1116856 CACATAACTCTCATACTAATTTATT-CTTTCATTCCCTTTGCTTTGCTCAGAGAATGGGCACTCCTCTTCTCCCTGCCTATCCATGTTTCTTT-TTGCAAAACTCTGATCAAATGCCTCTTACCTGCATAGCTCCACTTTGCTTTGATCCTTCTTATAAAAT-CTCTATATTCCC--AGA i dasNov3.JH568189 C 0 I 45 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6722722 354 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I a score=4624.000000 s hg38.chr12_KI270834v1_alt 73733 1 + 119498 C- s panTro5.chr12 127359738 1 + 137163284 C- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125710782 1 + 135337776 C- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8224147 1 - 8369578 C- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97882437 1 + 106955855 C- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123997528 1 + 133663169 C- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128245629 1 + 137757926 C- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10644210 1 - 16319837 C- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12267880 1 + 20526591 C- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119239649 1 + 128539186 C- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 581743 1 + 6255621 C- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4617105 1 - 8658521 C- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114817207 1 + 124281992 c- i calJac3.chr9 C 0 I 311 s saiBol1.JH378194 461815 1 - 9212255 c- i saiBol1.JH378194 C 0 I 308 s cebCap1.NW_016107484v1 2876172 1 + 4466143 c- i cebCap1.NW_016107484v1 C 0 I 312 s aotNan1.NW_018491581v1 1583378 1 + 5364348 c- i aotNan1.NW_018491581v1 C 0 I 311 s otoGar3.GL873618 4308028 2 + 7922563 TT i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6722722 354 - 9870158 I e dasNov3.JH568189 842675 45 - 1116856 I e canFam3.chr26 33160646 678 - 38964690 I a score=75234.000000 s hg38.chr12_KI270834v1_alt 73734 14 + 119498 CCCTAAATGT-AAAA s panTro5.chr12 127359739 15 + 137163284 CCCTAAATGTAAAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125710783 14 + 135337776 CCCTAAATGT-AAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8224148 14 - 8369578 CCCTAAATGT-AAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97882438 14 + 106955855 CCCTAAATGA-AAAA i nomLeu3.chr10 C 0 M 100 s rheMac8.chr11 123997529 14 + 133663169 CCCTAGATGT-AAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128245630 14 + 137757926 CCCTAGATGT-AAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10644211 14 - 16319837 CCCTAGATGT-AAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12267881 14 + 20526591 CCCTAGATGT-AAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119239650 14 + 128539186 CCCTAGATGT-AAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 581744 14 + 6255621 CCCTAGATGT-AAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4617106 14 - 8658521 CCCTAAATGT-AAAA i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4308030 14 + 7922563 CACTACATGG-ATTT i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6722722 354 - 9870158 I e dasNov3.JH568189 842675 45 - 1116856 I e canFam3.chr26 33160646 678 - 38964690 I e aotNan1.NW_018491581v1 1583379 311 + 5364348 I e cebCap1.NW_016107484v1 2876173 312 + 4466143 I e saiBol1.JH378194 461816 308 - 9212255 I e calJac3.chr9 114817208 311 + 124281992 I a score=31174.000000 s hg38.chr12_KI270834v1_alt 73748 8 + 119498 AACTATAT s panTro5.chr12 127359754 8 + 137163284 AACTATAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125710797 8 + 135337776 AACTATAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8224162 8 - 8369578 AACTGTAT i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123997543 8 + 133663169 AACTATAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128245644 8 + 137757926 AACTATAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10644225 8 - 16319837 AACGATAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12267895 8 + 20526591 AACTATAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119239664 8 + 128539186 AACTATAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 581758 8 + 6255621 AACTGTAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4617120 8 - 8658521 AACTATAT i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4308044 8 + 7922563 ATGTAAGT i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6722722 354 - 9870158 I e dasNov3.JH568189 842675 45 - 1116856 I e canFam3.chr26 33160646 678 - 38964690 I e aotNan1.NW_018491581v1 1583379 311 + 5364348 I e cebCap1.NW_016107484v1 2876173 312 + 4466143 I e saiBol1.JH378194 461816 308 - 9212255 I e calJac3.chr9 114817208 311 + 124281992 I e nomLeu3.chr10 97882452 100 + 106955855 M a score=41437.000000 s hg38.chr12_KI270834v1_alt 73756 8 + 119498 ATTCCTGG s panTro5.chr12 127359762 8 + 137163284 ATTCCTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125710805 8 + 135337776 ATTCCTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8224170 8 - 8369578 ATTCCTGG i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123997551 8 + 133663169 GTTCCTGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128245652 8 + 137757926 ATTCCTGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10644233 8 - 16319837 ATTCCTGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12267903 8 + 20526591 ATTCCTGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119239672 8 + 128539186 ATTCCTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 581766 8 + 6255621 ATTCCTGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4617128 8 - 8658521 ATTCCTGG i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4308052 8 + 7922563 ATGCAGAG i otoGar3.GL873618 C 0 I 1 s dasNov3.JH568189 842720 8 - 1116856 ATTTCGTA i dasNov3.JH568189 I 45 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6722722 354 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I e aotNan1.NW_018491581v1 1583379 311 + 5364348 I e cebCap1.NW_016107484v1 2876173 312 + 4466143 I e saiBol1.JH378194 461816 308 - 9212255 I e calJac3.chr9 114817208 311 + 124281992 I e nomLeu3.chr10 97882452 100 + 106955855 M a score=1328434.000000 s hg38.chr12_KI270834v1_alt 73764 134 + 119498 CCCC-----------------CTAGATGTAAAACTAGACTGGAA-GTGTCTTGAAGGATGCTGGTATTCCACGTATTCATCTGTCCAGTCAGCAGATACTGACT-----TCAGCTTCATGGCAGCCACCGTGGTAGGGAGAGTGGGGGCTAG-AAACC s panTro5.chr12 127359770 134 + 137163284 CCCC-----------------CTAGATGTAAAACTAGACTGGAA-GTGTCTTGAAGGATGCTGGTATTCCACGTATTCATCTGTCCAGTCAGCAGATACTGACT-----TCAGCTTCATGGCAGCCACCGTGGTAGGGAGAGTGGGGGCTAG-AAACT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125710813 134 + 135337776 CCCC-----------------CTAGATGTAAAACTAGACTGGAA-GTGTCTTGAAGGATGCTGGTATTCCACGTATTCATCTGtccagtcagcagatactgact-----tcagcttcatggcagccaccgtggtagggagagtgggggctag-aaact i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8224178 134 - 8369578 CCCC-----------------CTAGATGTAAAACTAGACTGGGA-GTGTCTTGAAGGATGCTGTTATTCCACGTATTCATCTGtccagtcagcagatactgact-----tcagcttcatggcagccaccgtggtagggagagtgggggctag-aaacg i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 123997559 134 + 133663169 CCCC-----------------TTAGATGTAAAACTAGACTGGAA-GTGTCTTGAAGGAAGCTGTTATTCCACGTATTCATCTGtccaatcagcagatactgact-----tcagcttcatggcaggcaccatggtagggagagtggtggctag-aaact i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128245660 134 + 137757926 CCCC-----------------TTAGATGTAAAACTAGACTGGAA-GTGTCTTGAAGGAAGCTGTTATTCCACGTATTCATCTGTCCAATCAGCAGATACTGACT-----TCAGCTTCATGGCAGGCACCATGGTAGGGAGAGTGGTGGCTAG-AAACT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10644241 134 - 16319837 CCCC-----------------TTAGATGTAAAACTAGACTGGAA-GTGTCTTGAAGGAAGCTGTTATTCCACGTATTCATCTGtccaatcagcagatactgact-----tcagcttcatggcaggcaccatggtagggagagtggtggctag-aaact i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12267911 134 + 20526591 CCCC-----------------TTAGATGTAAAACTAGACTGGAA-GTGTCTTGAAGGAAGCTGTTATTCCACGTattcatctgtccaatcagcagatactgact-----tcagcttcatggcaggcaccatggtagggagagtgggggctag-aaact i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119239680 134 + 128539186 CCCC-----------------TTAGATGTAAAACTAGACTGAAG-GTGTCTTGAAGGAAGCTGTTATTCCATGTATTCATCTGGCCAATCAGCAGATACTGACT-----TCAGCTTCATGGCAGGCACCATGGTAGGGAGAGTGggggctag-aaact i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 581774 134 + 6255621 CCCC-----------------TTAGATGTAAAACTAGACTGGAA-GTGTCTTGAAGGAAGCTGTTATTCCACGTATTCATCTGTCCAATCAGCAGATACTGACT-----TCAGCTTCATGGCAGGCACCATGGTAGGGAGAGTGggggctag-aaact i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4617136 134 - 8658521 CCCC-----------------TTAGATGTAAAACTAGACTGGAA-GTGTCTTGAAGGAAGCTGTTATTCCTCGTATTCATCTGtccaatcagcagatactgact-----tcagcttcatggcaggcaccatggtagggagagtgggggctag-aaact i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114817519 133 + 124281992 CCCG-----------------CTAGATGTAAAACTAGATTGGAA-GTGTCTTGAAGGAAGCTGTTATTCCAGGGA-TCTTCTGTCCAGTCAGCAGATACTGACT-----TCAGCTTCATGCCTGGCACCAGGGTGGGGAGAGTTGGGGCTAG-GAATG i calJac3.chr9 I 311 C 0 s saiBol1.JH378194 462124 133 - 9212255 CCCC-----------------CTAGATGTAAAACTAGATTGGAA-GTGCCTTGAAGGAAGCTGTTGTTCCAGGTA-TCATCTGTCCAGTCAGCAGATACTGACT-----TCAGCTTCATGGCTGGCACCAGGGTAGGGAGAGTCGAGGCTAG-GAACT i saiBol1.JH378194 I 308 C 0 s cebCap1.NW_016107484v1 2876485 133 + 4466143 CCCC-----------------CTAGATGTAAAACTAGATTGGAA-GTGTCTTGAAGGAAGCTGTTATTCCAGGTA-TCACCTGTCCAGTCAGCAGATACTGACT-----TCAGCTTCATGGCTGGGACCAGGGTAGGGAGAgtcggggctag-gaaat i cebCap1.NW_016107484v1 I 312 C 0 s aotNan1.NW_018491581v1 1583690 133 + 5364348 CCCC-----------------CTAGATGTAAAATTAGATTGGAA-GTGTCTTGAAGGAAGCTGTTATTCCGGATA-TCATCTGTCCAGTCAGTAGATACTGACT-----TCAGCTTCATGGCTGGCACCAGGATAGGGAGAGTCGGGGCTAG-GAACT i aotNan1.NW_018491581v1 I 311 C 0 s otoGar3.GL873618 4308061 151 + 7922563 CCCCAGCTGAACTTGCATGCTCTGGATGTAAAACTAGACTGAAATGTGTCTTGAAGGATACTGTTATTTCATGTCTTCATCCATCCAGTCAACAGATACCCACTGGATATCAACTTCACATCAGGCATCACCGTAGGGA-------GGCGAGCGAACT i otoGar3.GL873618 I 1 C 0 s dasNov3.JH568189 842728 136 - 1116856 TATC-----------------CTGCATGTAAGACTAGACTAAAA-GTGTCTGGAAGGAAGCTCTTGTTTCATGTATTCatctgtccagtcaacagatatttactgcatatgagctttatgccaggtaccaca--aggggcagtgagggcagg-aaat- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6722722 354 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I e nomLeu3.chr10 97882452 100 + 106955855 M a score=952474.000000 s hg38.chr12_KI270834v1_alt 73898 86 + 119498 GAATGAGACTCAACCCCTGCCTCGAAGAAGCTCACAACCAAGAGAGCCCCTCCCCCGGTGCCCAGGCCACAGTTTGTACTGAGGAC s panTro5.chr12 127359904 86 + 137163284 GAATGAGACTCAACCCCTGCCTCGAAGAGGCTCACAACCAAGAGAGCCCCTCCCCCAGTGCCCAGGCCACAGTTTGTACTGAGGAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125710947 86 + 135337776 gaatgagactcaacccctgcctcgaagaggctcacaaccaagAGAGCCCCTCCCCCAGTGCCCAGGCCACAGTTTGTACTGAGGAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8224312 86 - 8369578 gaatgagactcaacccctgcctcgaagaagctcacaaccaagAGAGCCCCTCCCCCTGTGCCCAGGCCACAGTTTGTACTGAGGAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97882556 86 + 106955855 gaatgagactcaacccctgcctcgaagaagctcacaaccaagAGAGCCCCTCCCCCGGTGCCCAGGCCGCAGTTTGTACTGAGGAC i nomLeu3.chr10 M 100 C 0 s rheMac8.chr11 123997693 86 + 133663169 gaatgagactcaacccctgcctcgaagaagctcacaaccaagAGAGCCCCTCCGCCAGTGCCCAGGCTGCAGTTTGTACTGAGGAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128245794 86 + 137757926 GAATGAGACTCAACCCCTGCCTCGAAGAAGCTCACAACCAAGAGAGCCCCTCCCCCAGTGCCCAGGCTGCAGTTTGTACTGAGGAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10644375 86 - 16319837 gaatgagactcaacccctgcctcgaagaagctcacaaccaagAGAGCCCCTCCCCCAGTGCCCAGGCTGCAGTTTGTACTGAGGAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12268045 86 + 20526591 gaatgagactcaacccctgcctcgaagaagctcacaaccaagagagCCCCTCCCCCAGTGCCCAGGCTGCAGTTTGTACTGAGGAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119239814 86 + 128539186 gaatgagactcaacccctgcctcaaagaagctcacaaccaagAGAGCCCCTCCCCCAGTGCCCAAGCTGCAGTTTGTACTGAGGAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 581908 86 + 6255621 gaatgagactcaacccctgcctcgaagaagctcacaaccaagAGAGCCCCTCCCCCAGTGCCCAGGCTGCAGTTTGTACTGAGGAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4617270 86 - 8658521 gaatgagactcaacccctgcctcgaggaagctcacaaccaagAGAGCCCCTCCCCCAGTGCCCAGGCTGCAGTTCGTACTGAGGAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114817652 84 + 124281992 GAATGAGATGAAACCCCTGCCTGGAAGAAGCTCACAGCC-AGAGAGCCCCCGC-CCAGGGCCCAGGCTGCAGTTTGTACTGAGGAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 462257 58 - 9212255 GAATGAGACGCAACCCCTGCCTGGAAGAAGCTCACGGCC-GGAGAGCGCCT---------CCCAGACC------------------ i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2876618 83 + 4466143 gaatgagacgcaacccccgcctggaagaagctcacagcc-AGAGAGCGCCTCC-CCAGGGCCCAGG-TGCTGTTTGTACTGAGGAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1583823 84 + 5364348 GAATGAGATGCAACCCCTGCCTGGAAGAAGCTCACAGCC-AGAGATCGCCTCC-CCAGGGCCCAGGCTGTAGTTTGTACTGAGGAC i aotNan1.NW_018491581v1 C 0 I 7 s proCoq1.NW_012154285v1 6723076 85 - 9870158 gaatgagacacagccactgccttaaagcagctcGTGACCAAGAGATCCCCTCCCCCGATGCCCAGGCTGCAG-TTGGACTGAGGGT i proCoq1.NW_012154285v1 I 354 C 0 s otoGar3.GL873618 4308212 85 + 7922563 GAAGGAGACTCAACCACTGCCTTAAAGAAGCTTGTGACAAAGA-AGCCCCTCTCCCAATGCCCAGGCTGCAGTTTGGACTGAGGGT i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 842864 63 - 1116856 gaatgacatgcagatcttgcct-aaagaaactcacagccACGG-----------CTGGTG-----------GCTTGTACTGAGGAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e canFam3.chr26 33160646 678 - 38964690 I a score=260967.000000 s hg38.chr12_KI270834v1_alt 73984 26 + 119498 CGCCTATTTGCCACACCTGTGTTTAG s panTro5.chr12 127359990 26 + 137163284 CGCCTGTTTGCCACACCCATGTTTAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125711033 26 + 135337776 CGCCTGTTTGCCACACCCATGTTTAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8224398 26 - 8369578 CGCCTGTTTGCCACACCCATGTTTAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97882642 26 + 106955855 CACCTGTTTGCCACACGCATGTTTAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123997779 26 + 133663169 GACCTGTTTGCCACACCCATGTTTAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128245880 26 + 137757926 GACCTGTTTGCCACACCCATGTTTAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10644461 26 - 16319837 GACCTGTTTGCCACACCCATGTTTAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12268131 26 + 20526591 GACCTGTTTGCCACACCCATGTTTAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119239900 26 + 128539186 GACCTGTTTGCCACACCCATGTTTAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 581994 26 + 6255621 GACCTGTTTGCCACACCCATGTTTAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4617356 26 - 8658521 GACCTGTTTGCCACACCCATGTTTAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114817736 25 + 124281992 GAGCTG-TTACCACCCCCATGTTTGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 462315 22 - 9212255 -AGCTG-TTGCCACGCCCA--TTTGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2876701 25 + 4466143 GAGCTG-CTGCCACGCCCGTGATTGG i cebCap1.NW_016107484v1 C 0 C 0 s proCoq1.NW_012154285v1 6723161 26 - 9870158 GACCTGTTTGCCACTCCCACGTTTAG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4308297 26 + 7922563 GACCTGTTTGCCACCCCCGCCTTTAG i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 842927 26 - 1116856 GACCTGTTTGCCACCCCCATGTTTAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e canFam3.chr26 33160646 678 - 38964690 I e aotNan1.NW_018491581v1 1583907 7 + 5364348 I a score=1390901.000000 s hg38.chr12_KI270834v1_alt 74010 116 + 119498 TGCCTCTCCTACCTGTGCTTGTTTTTCTTTccccattgccatcatcc-ttgtccagggtcaccttgctcccacttggaattttggaggaagcttcatctaggaactc-tgtttccaG---------------------------g s panTro5.chr12 127360016 116 + 137163284 TGCCTCTCCTACCTGTGCTTGTTTTTCTTTCCCCATTGCCATCATCC-TTGTCCAGGGTCACCTTGCTCCCACTTGGAATTTTGGAGGAAGCTTCATCTAGGAACTC-TGTTTCCAG---------------------------g i panTro5.chr12 C 0 C 0 s panPan2.chr12 125711059 116 + 135337776 TGCCTCTCCTACCTGTGCTTGTTTTTCTTTccccattgccatcatcc-ttgtccagggtcaccttgctcccacttggaattttggaggaagcttcatctaggaactc-tgtttccaG---------------------------g i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8224424 115 - 8369578 TGCCTCTCCTACCTGTGCTTG-TTTTCTTTCCCCATTGCCATCATCC-TTGTCCAGGGTCACCTTGCTCCCACTTGGAATTTTGGAGGAAGCTTCATCTAGGAACTC-TGTTTCCAG---------------------------g i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97882668 116 + 106955855 TGCCTCTCCTACCTGTGCTTGTTTTTCTTTccccattgccatcatcc-ttgtccagggtcaccttgctcccacttggaattttggaggaagcttcatctagaatctc-tgtttccaG---------------------------g i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123997805 143 + 133663169 TGCCTCTCCTACCTGTGGTTGCTTTTCTTTccccattgccgtcatcc-ttgtccagggtcaccttgctcccacttggaattttggaggaagcttcatctaggatctc-tgtttccaGGCTGCCTGTCCCGAtcaggactattttg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128245906 143 + 137757926 TGCCTCTCCTACTTGTGGTTGCTTTTCTTTCCCCATTGCCGTCATCC-TTGTCCAGGGTCACCTTGCTCCCACTTGGAATTTTGGAGGAAGCTTCATCTAGGATCTC-TGTTTCCAGGCTGCCTGTCCCaatcaggactattttg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10644487 143 - 16319837 TGCCTCTCCTACCTGTGGTTGCTTTTCTTTccccattgccgtcatcc-tcgtccagggtcaccttgctcccacttggaattttggaggaagcttcatctaggatctc-tgtttccaGGCTGCCTGTCCCGAtcaggactattttg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12268157 143 + 20526591 TGCCTCTCCTACCTGTGGTTGCTTTTCTTTccccattgccgtcatcc-ttgtccagggtcaccttgctcccacttggaattttggaggaagcttcatctaggatctc-tgtttccaGGCTGCCtgtcctgatcaggactattttg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119239926 143 + 128539186 TGCCTCTCCTACCTGTGATTGCTTTTCTTTCCCCATTGCCATCATCC-TTGTCCAGGGTCACCTTGCTCCCACTTGGAATTTTGGAGGAAGCTTCATCTAGGATCTC-TGTTTCCAGGCTGCCTGTCCCGAtcaggactattttg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 582020 142 + 6255621 TGCCTCTTCTACCTGTGGTTGCTTTTCTTTccccattgccgtcatcc-ttgtcca-ggtcaccttgctcccacttggaattttggaggaagcttcatctaggatctc-tgtttccaGGCTGCCtgtcccgatcaggactattttg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4617382 143 - 8658521 TGCCTCTCCTACCTGTGGTTGCTTTTCTTTccccattgccgtcaccc-ttgtccagggtcaccttgctcccacttggaattttggaggaagcttcatctaggatctc-tgtttccaGGCTGCCTGTCCCGAtcaggactattgtg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114817761 137 + 124281992 TGCTGCTCCCATCTGTGGTTGC------TTCGGCATTGCCATCAACC-TTGACCAGGGTCACCTTGCTTGCACTTGGAATTTTGGAGGAAGCTTCATCTAGGATCTC-TGTTTTCAGGCTGCCtgtcctgatcaggaccattttg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 462337 137 - 9212255 TGCCGCTCCCACCTGTGGTTGC------TTCCCCATTGCCATCAACC-TTGACCAGGGTCGCCTTGCTCCCACTTGGAATTTTGGAGGAAGCTTCATCTAGGATCTC-TGTTTTCAGGCTGCCCATCCTGAtcaggactattttg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2876726 136 + 4466143 TGCCACTCCCACCTGGGGTTGC------CTCCCCATTGCCATCAACC-TTGACCAGGGTCACCTTGCTCCCACTTGGAATTTTGGAGGAAGCTTCATCTAGGATCTC-TG-TTTCAGGATGCCCGTCCTGAtcaggactattttg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1583914 137 + 5364348 TGCCACGCCCACCTGTGGTTGC------CTCCCCATTGCCATCAACC-TTGACCAGGGTCACCTTGCTCCCACTTGGAATTTTGGAGGAAGCTTCATCTAGGATCTC-TGTTTTCAGGTTGCCtgtcctgatcaggactattttg i aotNan1.NW_018491581v1 I 7 C 0 s proCoq1.NW_012154285v1 6723187 116 - 9870158 TGGCTTTCCCATCTGTGGCTGttttcccttccctattgccatcatgc-ttgtccaggggcgctgtgctcccacttggaattttgaaggtagcctcatctgggatctc-tgcttccaag--------------------------- i proCoq1.NW_012154285v1 C 0 I 21 s otoGar3.GL873618 4308323 113 + 7922563 TTGCTCTCCCATCTTTTGTTGTTTTCCCTTCCTTATCACCATCATTCTTTGTCTATGGGCAATTTGCT----CTTGAAATTTTGAAGGCAG-CTCCTCTGGGATCTCTTGTTTCCAGG--------------------------- i otoGar3.GL873618 C 0 I 27 s dasNov3.JH568189 842953 125 - 1116856 TGCCTTTCCCACCTGTTTCAGTTTTTGCTTC-----------------TTATCCCAGGACACTGGCTCTCCAATTAGAACCTTGGAGATAGCGTCATCTC--CTGTC-TACCTCCAGGCTGCCTGACCTGAtcaggattatctgg i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e canFam3.chr26 33160646 678 - 38964690 I a score=92242.000000 s hg38.chr12_KI270834v1_alt 74126 7 + 119498 gttgcaa s panTro5.chr12 127360132 7 + 137163284 gttgcaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125711175 7 + 135337776 gttgcaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8224539 7 - 8369578 gttgcaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97882784 7 + 106955855 gttgcaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123997948 7 + 133663169 gttgcaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128246049 7 + 137757926 gttgcaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10644630 7 - 16319837 gttgcaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12268300 7 + 20526591 gttgcaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119240069 7 + 128539186 gttgcaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 582162 7 + 6255621 gttgcaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4617525 7 - 8658521 gttgcaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114817898 7 + 124281992 gttgcaa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 462474 7 - 9212255 gttgcaa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2876862 7 + 4466143 gttgcaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1584051 7 + 5364348 gttgaaa i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4308463 7 + 7922563 gttgcaa i otoGar3.GL873618 I 27 C 0 s dasNov3.JH568189 843078 7 - 1116856 ttcgcaa i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6723303 21 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I a score=2864353.000000 s hg38.chr12_KI270834v1_alt 74133 221 + 119498 atggtagaaactgagctcaaagtggcttaatccaaagtggaaacgcattgattccagaggcatgctggcttcaggcacagctggatctag-gattcaaatgtatcagtgggaat-----------------------------------ct-ttccttccc-tttct-tggctctgctgtcttcc----------------------------------------------------------------------------gtttgggcttc-atctcaggcagccggctctgtccatgctgagactttg-------------ggagcctccagcatgaggttggcatcc s panTro5.chr12 127360139 221 + 137163284 atggtggaaactgagctcaaagtggcttaatccaaagtggaaacgcattgattccagaggcatgctggcttcaggcacagctggatctag-gactcaagtgtatcagtgggaat-----------------------------------ct-ttccttccc-tttct-tggctctgctgtcttct----------------------------------------------------------------------------gtttgggcttc-atctcaggcagctggctctgtccatgctgagagtttg-------------ggagcctccagcatgaggttggcatcc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125711182 221 + 135337776 atggtggaaactgagctcaaagtggcttaatccaaagtggaaacgcattgattccagaggcatgctggcttcaggcacagctggatctag-gactcaagtgtatcagtgggaat-----------------------------------ct-ttccttccc-tttct-tggctctgctgtcttct----------------------------------------------------------------------------gtttgggcttc-atctcaggcagctggctctgtccatgctgagagtttg-------------ggagcctccagcatgaggttggcatcc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8224546 221 - 8369578 atggtggaaactgagctcaaagtggcttaatccaaagtggaaacgcattgattccaaaggcatgctggcttcaggcacagctggatctag-gactcaagtgtatcagtgggaat-----------------------------------ct-ttccttccc-tttct-tggccctgctgtcttcc----------------------------------------------------------------------------gtttgggcttc-atctcaggcagccggctctgtctatgctgagagtttg-------------ggagcctccagcatgaggttggcatcc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97882791 221 + 106955855 atggtggaaactgagctcaaagtggcttaatctaaagtggaaacgcattgattccagaggcatgctggcttcaggcacagctggatctag-gactcaagtgtatcagtgggaat-----------------------------------ct-ttccttccc-tttct-tggctctgctgtcttcc----------------------------------------------------------------------------atttgggcttc-atctcaggcagccggctctgtccatgctgagagtttg-------------ggagcctccagcatgaggttggcatcc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123997955 221 + 133663169 atggtggaaactgagctcaaagtggcttaatctaaagtgaaaacgcattgattccagaggcatcctggcttcaggcacagctggatctag-gactcaagtgtatcagtgggaat-----------------------------------ct-ttccttccc-tttct-tggctctgctgtcttct----------------------------------------------------------------------------gtttaggcttc-atctcaggcagcaggctctgtccatgctgagagtttg-------------ggagcctcccgcatgaggttggcatcc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128246056 221 + 137757926 atggtggaaactgagctcaaagtggcttaatctaaagtgaaaacgcattgattccagaggcatcctggcttcaggcacagctggatctag-gactcaagtgtatcagtgggaat-----------------------------------ct-ttccttccc-tttct-tggctctgctgtcttct----------------------------------------------------------------------------gtttaggcttc-atctcaggcagcaggctctgtccatgctgagagtttg-------------ggagcctcccgcatgaggttggcatcc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10644637 221 - 16319837 atggtggaaactgagctcaaagtggcttaatctaaagtgaaaacgcattgattccagaggcatcctggcttcaggcacagctggatctag-gactcaagtgtatcagtgggaat-----------------------------------ct-ttccttccc-tttct-tggctctgctgtcttct----------------------------------------------------------------------------gtttaggcttc-atctcaggcagcaggctctgtccatgctgagagtttg-------------ggagcctcccgcatgaggttggcatcc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12268307 221 + 20526591 atggtggaaactgagctcaaagtggcttaatctaaagtggaaacacattgattccagaggcatcctggcttcaggcacagctggatctag-gactcaagtgtatcagtgggaat-----------------------------------ct-ttccttccc-tttct-tggctctgctgtcttct----------------------------------------------------------------------------gtttaggcttc-atctcaggcagcaggctctgtccatgctgagagtttg-------------ggagcctcccgcatgaggttggcatcc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119240076 221 + 128539186 atggtagaaactgagctcaaagtggcttaatctaaagtggaaacacattgattccagaggcatcctggcttcaggcacagctggatctag-gactcaagtgtatcagtgggaat-----------------------------------ct-ttccttccc-tttct-tggctctgctgtcttct----------------------------------------------------------------------------gtttaggcttc-atctcaggcagcaggctctgtccatgctgagagtttg-------------gcagcctcccgcatgaggttggcatcc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 582169 221 + 6255621 atggtggaaaccgagctcaaagtggcttaatctaaagtgaaaacgcattgattccagaggcatcctggcttcaggcacagctggatctag-gactgaagtgtatcagtgggaat-----------------------------------ct-ttccttccc-tttct-tggctctgctgtcttct----------------------------------------------------------------------------gtttgggcttc-atctcaggcagcaggctctgtccatgctgagagtttg-------------ggagcctcccgcatgaggctggcatcc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4617532 221 - 8658521 atggtggaaactgagctcaaagtggcttaatctaaagtggaaacgcattgattccagaggcatgctggcttcagacacagctggatctag-gactcaagtgcatcagtgggaat-----------------------------------ct-ttccttccc-tttct-tggctctgctgtcttct----------------------------------------------------------------------------gtttgggcttc-atctcaggcagcaggctctgtccatgctgagagtttg-------------ggagcctcccgcatgaggttggcatcc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114817905 221 + 124281992 atggtggaagctgaactcaaagtggctcaatctaaagtggaaatgcattgattctggaggcatgctggcttcaggcacagcgggatctag-gactcaagtgtatcagtgggact-----------------------------------ct-ttcctccct-tttct-tggctctgctgtcttca----------------------------------------------------------------------------gtttgggcttc-atctcaggcagaaggctctgtccgtgctgagagtttg-------------ggggcctccagcatgaggctggcatcc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 462481 221 - 9212255 atggtggaagctgagctcaaagtggcttaatctaaagtggaaatgcattgattccggaggcatactggcttcaggcacagcgggatctag-gactcaagtgtatcagtgggaat-----------------------------------ct-ttccttcct-tttct-tggctctgctatcttcg----------------------------------------------------------------------------gtttgggcttc-atctcaggcagaaggctctgtccgtgctgagagtttg-------------ggggcctccagcgtgaggctggcatcc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2876869 221 + 4466143 atggtggaagctgagctcaaagtggcttaatctaaagtggaaatgcattgattcgggaggcatgctggcttcaggcacagcgggatctag-gactcaagtgtatcagtgggaat-----------------------------------ct-ttccgtcct-tttct-tggctctgctgtcttcg----------------------------------------------------------------------------gtttgggcttc-atctcaggcagaaggctctgtccgtgctgagagcttg-------------ggggcctccagcatgaggctggcatcc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1584058 210 + 5364348 acggtggaagctgagctcaaagtggcttaatctaaagtggaaatgcattgatt-----------ctggcttcaggcacagcgggatctag-gactcaagtgtatcagtgggaat-----------------------------------ct-ttccttctt-tttct-tggctctgctgtcttcg----------------------------------------------------------------------------gtttgggcttc-atctcaggcagaaggctctgtccgtgctgagagtttg-------------agggcctccagcatgaggctggcatcc i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6723324 222 - 9870158 attttggaaactgagctcacagtgaCATAAGCTAAAGTGGAAATGCATTGAtt-cagaggtaggctggcttcaggcacagctggatctaggggctcagctgtgtcagtgagaat-----------------------------------tg-gtcctttcc-cttccttggctctgctgtcttct----------------------------------------------------------------------------gtttgggcttc-atctcaggccacaggccctgtccctgctgagagtatg-------------ggagcctccagcacaaggctggcatcc i proCoq1.NW_012154285v1 I 21 I 325 s otoGar3.GL873618 4308470 345 + 7922563 atgttggaaagtgagctcaaagtgacataagcaaaaacggaaatgcattgatc-tggatgctggctggcttcaagcacagctggatctagaggctcaaatgtattaatgggaatctgCATGTTGGCTCTCCTGCCTTTGGTTTgggcagtg-gttctcaac-cttcc-taatgctgcgaacctttaatacagtccaaacgggttgcgacccacaggttgagaaccactgcGGGTTGCCACCCACAGGTTGAAAACTGCTGGGCTTGGGCTTC-ATCTCAGGCTGCAAGCCCTGTACATGCTGAGAATCTGGGAGCCTCATGCTGGAGCCTCCAGCATGAAGCTGGCCCCC i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 843085 224 - 1116856 atatcagaaactgagcttaaagtgactgaggctcaaaagggagtgcattgagtccagaggtatgctgactttaggcacagctggatctag-ggctccagtgtgttgttgggaat-----------------------------------ctgttccttcccatttct-cggctctgctttctttt----------------------------------------------------------------------------ctttgggcttctgtctcaggcagcagactctgtccaggctgagagtatg-------------gcaaccagcagcactaggtttgcatca i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e canFam3.chr26 33160646 678 - 38964690 I a score=231441.000000 s hg38.chr12_KI270834v1_alt 74354 20 + 119498 tattagctcagcatccccag s panTro5.chr12 127360360 20 + 137163284 tattagctcagcatccccag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125711403 20 + 135337776 tattagctcagcatccccag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8224767 20 - 8369578 tattagctcagcatccccat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97883012 20 + 106955855 tattagctcagcatccccag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123998176 20 + 133663169 tattagctcagcatccccag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128246277 20 + 137757926 tattagctcagcatccccag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10644858 20 - 16319837 tattagctcagcatccccag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12268528 20 + 20526591 tattagttcagcatccccag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119240297 20 + 128539186 tattagctcagcatccccag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 582390 20 + 6255621 tattagctcagcatccccag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4617753 20 - 8658521 tattagctcagcatccccag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114818126 20 + 124281992 tactaactcaggatccccag i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 462702 20 - 9212255 tactaactcaggatcctcac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2877090 20 + 4466143 tactaactcaggatcccaag i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1584268 20 + 5364348 tactaactcaggatccccag i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4308815 20 + 7922563 TGCTAGCTCAGCACCCCTGG i otoGar3.GL873618 C 0 I 76 s dasNov3.JH568189 843309 20 - 1116856 tatgagctcagcactcctag i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6723546 325 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I a score=4164008.000000 s hg38.chr12_KI270834v1_alt 74374 455 + 119498 gg----gagagagggctcttctttcccatacattccctcaaagctcccagagttggctgtgattggacagatttgggtcacatgcccatgccgaaaccaatcctggtggccataggaatgggatacattgaCAC-------------------------------GTCCCA-------------------CAGAGGGTAGGGTGGAGTGCAAA-----------------------CAATCCTCTCTCC-----------------------------------------------------------------------------------------TGAGGGTGGCTCTTCAGCACC---TGCCCCAGCCTCCAGCCCATGCTTCTGCCTGGCTGAAAGAGCCCACAATTTTGCTCCTCAGCATGACTCAAGCA--CCTG--------GCTTCGCCAGCCCC-CTTTGCAGGCTGCTCCCCACACTGAGGTTCCTGAGGCCTGTACCAGCCCTCTTCCTTCCCAGCCAGCTCTGGTGGTGTCCTGTTACCTCTGCACTCCGTTCCTGCTGGCACCACCCCCCACCCCCGCGCCTCAGCA-CGCTCACAGCTTAGACAGCTTCCT---TTCTGCTTTT s panTro5.chr12 127360380 453 + 137163284 gg----gagagagggctcttctttcccatacattcccacaaagctcccagaattggctgtgattggacagatttgggtcacatgcccatgcccaaaccaatcctggtggccataggaatgggatacattgaCAA-------------------------------GTCCCA-------------------CAGAGGGTAGGGTGGAGTGCAAA-----------------------CAATCCTCTCTCC-----------------------------------------------------------------------------------------TGAGGGTGGCTCTTCAGCACC---TGCCCCAGCCTCCAGCCCATGCTTCTGCCTGGCTGAAAGAGCCCACAATTTTGCTCCTCAACATGACTCAAGCA--CCTG--------GCTTCGCCAGCCCC-CTTTGCAGGCTGCTCCCCACACTGAGGTTCCCGAGGCCTGTACCAGCCCTCTTCCTTCCCAGCCAGCTCTGGTG--GTCCTGTTACCTCTGCGCTCCGTTCCTGCTGGCACTGTCCCCCACCCCCGCGCCTCAGCA-CGCTCACAGCTTAGACAGCTTCCT---TTCTGCTTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125711423 453 + 135337776 gg----gagagagggctcttctttcccatacattcccacaaagctcccagaattggctgtgattggacagatttgggtcacatgcccatgcccaaaccaatcctggtggccataggaatgggatacattgaCAA-------------------------------GTCCCA-------------------CAGAGGGTAGGGTGGAGTGCAAA-----------------------CAATCCTCTCTCC-----------------------------------------------------------------------------------------TGAGGGTGGCTCTTCAGCACC---TGCCCCAGCCTCCAGCCCATGCTTCTGCCTGGCTGAAAGAGCCCACAATTTTGCTCCTCAACATGACTCAAGCA--CCTG--------GCTTCGCCAGCCCC-CTTTGCAGGCTGCTCCCCACACTGAGGTTCCCGAGGCCTGTACCAGCCCTCTTCCTTCCCAGCCAGCTCTGGTG--GTCCTGTTACCTCTGCGCTCCGTTCCTGCTGGCACTGTCCCCCACCCCCGCGCCTCAGCA-CGCTCACAGCTTAGACAGCTTCCT---TTCTGCTTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8224787 452 - 8369578 gg----gagagagggctcttctttcccatacattcccacaaagctcccagaattggctgtgattggacagatttgggtcacatgcccatgcccaaaccaatcctggtggccataggaatgggatacattgaCAC-------------------------------GTCCCA-------------------CAGAGGGTAGGGTGGAGTGCAAA-----------------------CAGTCCTCTCTCC-----------------------------------------------------------------------------------------TGAGGGTGGCTCTTCAGCACC---TGCCCCAGCCTCCAGCCCATGCTTCTGCCTGGCTGAAAGAGCCCACAATTTTGCTCCTCAACATGACTCAAGCA--CCTG--------GCTTCGCCAGCCCC-CTTTGCAGGCTGCT-CCCACACTGAGGTTCCCAAGGCCTGTACCAGCCCTCTTCCTTCCCAGCCAGCTCTGGTG--GTCCTGTTACCTCTGCGCTCCGTTCCTGCTGGCACCGCCCCCCACCCCTGCGCCTCAGCA-CGCTCACAGCTTAGACAGCTTCCT---TTCTGCTTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97883032 444 + 106955855 gg----gagagagggctcttctttctcatgcattcccacaaagctcccagaattggctgtgattggacagatttgggtcacatgcccatgcccaaaccaattctggtggccataggaatgggatacattgaCAA-------------------------------GTCCCA-------------------CAGAGGGTAGGGTGGGATGCAAA-----------------------CAGTCCTTTCTCC-----------------------------------------------------------------------------------------TGAGGGCAGCTCTTTAGCGCC---TGCCCCAGCCTCCAGCCTGTGTTCCTGCCTGGCTGAAAGAGCCCACCATTTTGCTCCTCAACATGACTCAAGCA--CCTG--------ACTTGGCCGGCCCC-CTTTGCAGGCTGCTCCCCACACTGAGGTACCCAATGCCTGTACCAGCCTTCTTCCTTCCCAGCCAGCTCTGGTG--GTCCTGTTACCTCTGTGCTCCGTTCCTGCTGGCA--------CACCCCC-CGCCTCGGCA-CGCTCACAGCTTAAACAGCTTCTT---TTCTGCTTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123998196 444 + 133663169 gg----gagagagggctcttctttcccatgcattcccacaaagctcccagaattggctgtgattggacagatttgggtcacatgcccttgcccaaaccaa---tggtggccataggaatgggatacattgacaa-------------------------------gtcctg-------------------CAGAGGGTAGGGTGGGGTGCAAA-----------------------CAATTGTTTCTCC-----------------------------------------------------------------------------------------TGAGGGTGGCTCTTCAGCACC---TGCCCCAGCCTCCAGCCTGTGCTCCTGCCTGGCTGAAAGAGCCCATCATTTTGCTCCTCAACATGACTCAAGCA--CCTG--------GCTTGGCCGGACCC-CTTTGCAGGCTGCTCCCCACCCTGAGGTTCCTGAGGCCTGTACCAGCCCTCTTCCTTCCCAGCCAGCTCTGGTG--GTCCTGTTACCTCTGTGCTCTGTTCCTGCTGGC-------CCCACCCC--CACCTCGGCA-TGCTCACAGCTCAGACAGCTTCCTTTCTTCTGCTCTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128246297 444 + 137757926 gg----gagagagggctcttctttcccatgcattcccacaaagctcccagaattggctgtgattggacagatttgagtcacatgcccttgcccaaaccaa---tggtggccataggaatgggatacattgacaa-------------------------------gtcctg-------------------CAGAGGGTAGGGTGGGGTGCAAA-----------------------CAATTGTTTCTCC-----------------------------------------------------------------------------------------TGAGGGTGGCTCTTCAGCACC---TGCCCCAGCCTCCAGCCTGTGCTCCTGCCTGGCTGAAAGAGCCCATCATTTTGCTCCTCAACATGACTCAAGCA--CCTG--------GCTTGGCCGGACCC-CTTTGCAGGCTGCTCCCCACCCTGAGGTTCCCGAGGCCTGTACCAGCCCTCTTCCTTCCCAGCCAGCTCTGGTG--GTCCTGTTACCTCTGTGCTCTGTTCCTGCTGGC-------CCCACCCC--CACCTCGGCA-TGCTCACAGCTCAGACAGCTTCCTTTCTTCTGCTCTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10644878 448 - 16319837 ggtctctcgagagggctcttctttcccatgcattcccacaaagctcccagaattggctgtgattggacagatttgagtcacatgcccttgcccaaaccaa---tggtggccataggaatgggatacattgacaa-------------------------------gtcctg-------------------CAGAGGGTAGGGTGGGGTGCAAA-----------------------CAATTGTTTCTCC-----------------------------------------------------------------------------------------TGAGGGTGGCTCTTCAGCACC---TGCCCCAGCCTCCAGCCCGTGCTCCTGCCTGGCTGAAAGAGCCCATCATTTTGCTCCTCAACATGACTCAAGCA--CCTG--------GCTTGGCCGGACCC-CTTTGCAGGCTGCTCCCCACCCTGAGGTTCCCGAGGCCTGTACCAGCCCTCTTCCTTCCCAGCCAGCTCTGGTG--GTCCTGTTACCTCTGTGCTCTGTTCCTGCTGGC-------CCCACCCC--CACCTCGGCA-TGCTCACAGCTCAGACAGCTTCCTTTCTTCTGCTCTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12268548 444 + 20526591 gg----gagagagggctcttctttcccatgcattcccacaaagctcccagaattggctgtgattggacagatttgagtcacatgcccttgcccaaaccaa---tggtggccataggaatgggatacattgacaa-------------------------------gtcctg-------------------CAGAGGGTAGGGTGGGGTGCAAA-----------------------CAATTGTTTCTTC-----------------------------------------------------------------------------------------TGAGGGTGGCTCTTCAGCACC---TGCCCCAGCCTCTAGCCTGTGTTCCTGCCTGGCTGAAAGAGCCCATCATTTTGCTCCTCAACATGACTCAAGCA--CCTG--------GCTTGGCCGGACCC-CTTTGCAGGCTGCTCCCCACCCTGAGGTTCCCGAGGCCTGTACCAGCCCTCTTCCTTCCCAGCCAGCTCTGGTG--GTCCTGTTACCTCTGTGCTCTGTTCCTGCTGGC-------CCCACCCC--CGCCTCGGCA-TGCTCACAGCTTAGACAGCTTCCTTTCTTCTGCTCTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119240317 438 + 128539186 gg----gagagagggctcttctttcccatgcattcccacaaaactcccagaattggctgtgattggacagatttgagt------cccttgcccaaaccaa---tggtgcccataggaatgggatacattgacaa-------------------------------gtcctg-------------------CAGAGGGTGGGGTGGGGTGCAAA-----------------------CAATCCTTTCTCC-----------------------------------------------------------------------------------------TGAGGGTGGCTCTTCAGCACC---TGCCCCAGCCTCCAGCCTGTGCTCCTGCCTGGCTGAAAGAGCCCATCATTTTGCTCCTCAACATGACTCAAGCA--CCTG--------GCTTGGCCGGACCC-CTTTGCAGGCTGCTCCCCACCCTGAGGTTCCCGAGGCCTGTACCAGCCCTCTTCCTTCCCAGCCAGCTCTGGTG--GTCCTGTTACCTCTGTGCTCTGTTCCTGCCGGC-------CCCACCCC--CGCCTCGGCA-TGCTCACAGCTTAGACAGCTTCCTTTCTTCTGCTCTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 582410 444 + 6255621 gg----gagagagggctcttctttcccacgcattcccacaaagctcccagaattgactgtgattggacagatttgagtcacatgcccttgcccaaaccaa---tggtagccataggaatgggatacattgacaa-------------------------------gtcctg-------------------CAGAGGGTAGGGTGGGGTGCAAA-----------------------CAATTGTTTCTCC-----------------------------------------------------------------------------------------TGAGGGTGGCTCTTCAGCACC---TGCCCCAGCCTCCAGCCTGTGTTCCTGCCTGGCTGAAAGAGTCCATCATTTTGCTCCTCAACATGACTCAAGCA--CCTG--------GCTTGGCCGGACCC-CTTTGCAGGCTGCTCCCCACCCTGAGGTTCCCGAGGCCTGTACCAGCCCTCTTCCTTCTCAGCCAGCTCTGGTG--GCCCTGTTACCTCTGTGCTCTGTTCCTGCTGGC-------CCCACCCC--CGCCTCGGCA-TGCTCACAGCTTAGACAGCTTCCTTTCTTCTGCTCTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4617773 444 - 8658521 gg----gagagagggctcttctttcccacacattcccacaaagctcccagaattggctgtgactggacagatttgagtcacatgcccttgcccaaaccaatcctggtggccataggaatgggatacattgacaa-------------------------------gtcctg-------------------CAGAGGGTAGGGTGGGGTGCAAA-----------------------CAATCCTTTCTCC-----------------------------------------------------------------------------------------TGAGGGCGGCTCTTCAGCACC---TGCCCTATCCTCCAGCCTGTGCTCCTGCCTGGCTGAAAGAGCCCATCATTTTGCTCCTCAACATGACTCAAGCA--CCTG--------GCTTGGCCGGACCC-CTTTGCAGGCTGCTCCCCACCCTGAGGTTCCTGCGGCCTGTACCAGCCCTCTTCCTTCCCGGCCAGCTCTGGTG--GTCCTGTTGTCTATGTGTTCCATTCCTGCTGGC-------CCCACCCC--CGCCTCGGCA-TGCTCACAGCTTAGATAGCTTCCT---TTCTGCTCTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114818146 434 + 124281992 gg----gagagagggctcttctttcacatgcattcccacgaagctcccagaattggatgtgattgcacaggtttgggttacatgcctgtgtccgaaacaatcctggtggccataggaatgggataccctgaCAA-------------------------------GTCCTG-------------------CAGC-GGGAGGGTGGAGCGCAGA-----------------------CAGTC--CCCTCC-----------------------------------------------------------------------------------------TGAGGGCGGCTCTTCAGCAGC---TGCCCCAGCCTCCAGCC-ATGCTTCTGCCTGGCTGAAAGAGCCCACTAGTTTGCCCCTCAGCATGACTTGAGCA--CCTG--------GCTTGGCCAACCCC-CTTTGCAG--TGCTCCCCGTGCTGAGCTTCCCCAGGCCTGTGCCAGCCCTCTTCCTTCCCGGCCAGCTCTGGTG--GTCCTGCCA-CTCCGTGCTCTGTTCCCGCTGGC-------CCGGCCGC-----CTCGGCA-TGCTCACAGCTTACACAGCTTCCt---tttttttttt i calJac3.chr9 C 0 I 283 s saiBol1.JH378194 462722 434 - 9212255 gg----gagagagggctcttcttctacatgcattcccac-aagctcccagaattggatgtgactagacaggttttggttacatgcccgtgtctgaaacaatcctggtggccatagaaatgggatacactgaCAA-------------------------------GTCCTG-------------------CAGCGGGGAGGGTGGGGCACAGA-----------------------CAGTC--CCCTCC-----------------------------------------------------------------------------------------TGAGGGCGGCTCTTCAGTGGC---TGGCCCAGCCTCCAGCC-ATGCTTCTGCCTGGCTGAAAGAGCCCACTGTTTTGCCCCTCAGCACGACTCAAGCA--CCTG--------GCTTGTCCAGCCCC-CTTTGCAG--TGCTCCCCGCGCTGAGCTTCCCGAGGCCTGTGCCAGCCCTCTTCCTTCCCGGCCAGCTCTGGTG--GTCCTGCCA-CTCTGTGCTCCGTTCCTGCTGGT-------GCAGCCCC-----CTTGGCA-TGCTCACAGCTTACACAGCTTCCT---TTCTGCTTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2877110 435 + 4466143 gg----gagagagggctcttctttcacatgcattcccatgaagctcccagaattggatgtgattggacaggtttgggttacatgcccgtgtccgaaacaatcctggtggccataggaatgggatacgctgaCAA-------------------------------GTCCTG-------------------CAGCGGGGAGGGTGGGGCGCAGA-----------------------CAGTC--CCCTCC-----------------------------------------------------------------------------------------TGAGGGTGGCTCTTCAGTGGC---TGCCCCAGCCTCTAGCC-ATGCTTCTGCCTGGCTGAAAGAGCCCACTGTTTTGCCCCTCAGCACGACTCAAGCA--CCTG--------GCTTGGCCGGCCCC-CTTTGCAG--TGCTCCCCACGCTGAGCTTCCCAAGGCCTGTTCCAGCCCTCTTCCTTCCTGGCCAGCTCTGGTG--GTTCTGCCA-CTCTGTGCTCCGTTCCCGCTGGC-------CCGGCCCG-----CTCGGCA-TGCTCACAGCTTACACAGCTCCCT---TTCTGCTTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1584288 433 + 5364348 gg----gagagagggctcttctttcacatgcattctcacgaagctcccagaattggatgtgattggacaggtttgggttacatgcccgtgtccaaaacaatcctggtggccataggaatgggatacactgaCAA-------------------------------GTCCTG-------------------CAGCGGGGAGGGTGGGGCGCAGA-----------------------CAGTC--CCCTCC-----------------------------------------------------------------------------------------TGAGGG-GGCTCTTCAGTGGC---TGCCCCAGCCTCCAGCC-GTGCTTCTGCCTGGCTCAAAGAGCCCACTATTTTGCCCCTCAGCACAACTCCAGCA--TCTG--------GCTCGGCCGGCCCC-CTTTGCAG--TGCTCCCCGTGC-GAGCTTCCCGAGGCCTGTGCCAGCCCCCTTCCTTCCCGACCAGCTCTGGTG--GTCCTGCCA-CTCTGGGCTCCGTTCCCGCTGGC-------CCGGCCCC-----CTCGGCA-TGCTCACAGCTTACAGAACTTCCT---TTCTGCTTTT i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 843329 577 - 1116856 gg----cagaaa-----------------ccattcccac-aggctcccggagttggctaggattggacagatgtgggtctcctgcccatccctgaaccaatcccagtggccgcaggactggaagactttaaCAGGGGTGGGGCCCAGAGAGAGGGAAGGGAGATTGTCCAGAGGACAATGGGGAGGTTGCCAGAGGCGAGGGGTGGGTGCTGAGCAGGCCCAGCCCCTGGATGGCCCCGTCTGTCCTCCATGCTGCTGTCTGCCCAGGTTACTGCGACACTACTTAGTGTCTGTCATTGTGCTCAGAAGACTTCAGGGAGTGCCCTTGGCGAGATGAGTGAGGGCGGTTCCTCAGCAGCTCTTACTTTTACCTCTAGTCTG-GCTCCTCCGTAGCTGAAAGAAGCCACCATTTTGCCCCTCGCCACTTCCTTAGCATTCCTGTGTCCAGAGATCTGCCAGCCCCTCCTGGCAGCATGCA-CCTACTCTGAACTTACATAGAATTATTCCAACCTTCTCCCCTCC-------------TG--TCCCTGCCGCC-----GTTCTGCCTCCACTGGC-------TCGCTTTC--CTTCCTGCCAGCCCTCTCGGCTCTGACAGCACCGC---TTTT------ i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6723546 325 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I e otoGar3.GL873618 4308835 76 + 7922563 I a score=239342.000000 s hg38.chr12_KI270834v1_alt 74829 26 + 119498 CTGTTCCGAAGGTTCCACACTCGTGA s panTro5.chr12 127360833 26 + 137163284 CTGTTCCGAAGGTTCCACACTCGTGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125711876 26 + 135337776 CTGTTCCGAAGGTTCCACACTCGTGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8225239 26 - 8369578 CTGTTCCGAAGGTTCCACACTCGTGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97883476 26 + 106955855 CTGTTCCGAAGGTTCCACACTTGTGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123998640 26 + 133663169 CTGTTCCGAAGGTTCCACAATTGTGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128246741 26 + 137757926 CTGTTCCGAAGGTTCCACAATTGTGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10645326 26 - 16319837 CTGTTCCGAAGGTTCCACAATTGTGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12268992 26 + 20526591 CTGTTCTGAAGGTTCCACACTTGTGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119240755 26 + 128539186 CTGTTCCGAAGGTTCCACACTTGTGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 582854 26 + 6255621 CTGTTCTGAAGGTTCCACAATTGTGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4618217 26 - 8658521 CTGTTCCGAAGGTTCCACACTTGTGA i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 463156 26 - 9212255 CTGTTCTGAAGGTTTCACACTCATGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2877545 25 + 4466143 CTGTTCTGAAGGTTTCA-ACTCATGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1584721 26 + 5364348 CTGTTCTGAAGGCTTCACACTCATGA i aotNan1.NW_018491581v1 C 0 I 318 s dasNov3.JH568189 843906 26 - 1116856 CCGTTCCAGTGGCTTCACACTTGTGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6723546 325 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I e otoGar3.GL873618 4308835 76 + 7922563 I e calJac3.chr9 114818580 283 + 124281992 I a score=10920.000000 s hg38.chr12_KI270834v1_alt 74855 1 + 119498 T s panTro5.chr12 127360859 1 + 137163284 T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125711902 1 + 135337776 T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8225265 1 - 8369578 T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97883502 1 + 106955855 T i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123998666 1 + 133663169 T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128246767 1 + 137757926 T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10645352 1 - 16319837 T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12269018 1 + 20526591 T i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119240781 1 + 128539186 T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 582880 1 + 6255621 T i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4618243 1 - 8658521 T i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 463182 1 - 9212255 T i saiBol1.JH378194 C 0 I 325 s cebCap1.NW_016107484v1 2877570 1 + 4466143 T i cebCap1.NW_016107484v1 C 0 I 320 s aotNan1.NW_018491581v1 1585065 1 + 5364348 T i aotNan1.NW_018491581v1 I 318 C 0 s dasNov3.JH568189 843932 1 - 1116856 T i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6723546 325 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I e otoGar3.GL873618 4308835 76 + 7922563 I e calJac3.chr9 114818580 283 + 124281992 I a score=1200066.000000 s hg38.chr12_KI270834v1_alt 74856 111 + 119498 CTTGCTACCCTTTTCTGATGCATTCATCCCCCTGCTGCCCCAGGGACAAGTAGTGCCTGGGCTGGGGACCCTTTACAGTG---TCAAGGCCCGTGCACGGCTTTGCACGCTGCA s panTro5.chr12 127360860 111 + 137163284 CTTGCTACCCTTTTCTGATGCATTCATCCCCCTGCTGCCCCAGGGACAAGCAGTGCCTGGGCTGGGGACCCTTTACAGTG---TCAGGGCCCGTGCACAGCTTTGCACGCTGCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125711903 111 + 135337776 CTTGCTACCCTTTTCTGATGCATTCATCCCCCTGCTGCCCCAGGGACAAGCAGTGCCTGGGCTGGGGACCCTTTACAGTG---TCAGGGCCCGTGCACAGCTTTGCACGCTGCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8225266 111 - 8369578 CTTGCTACCCTTTTCTGATGCATTCATCCCCCTGCTGCCCCAGGGACAAGCAGTGCCTGGGCTGGGGACCCTTTACAGTG---TCAGGGCCCGTGCACGGCTTTGCACGCTGCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97883503 111 + 106955855 GTTGTTCCCCTTTTCTGATGCATTCATCCCCCTGCTGCCCCAGGGAGAAGCAGTGCCTGAGCTGGGGACCCTTTACAGTG---TCAGGGCCCGTGCACGGCTTTGCACGCTGCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123998667 110 + 133663169 CTTGCTACCCTTTTCTGACGCATTCATCCCCCTGCTGCCCCAGGGAGAAGCAGTGCCTGGGCTGGGCA-CCTTTACAGTG---TCAGGGCCCGTGCACGGCTTTGCACACTGCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128246768 110 + 137757926 CTTGCTACCCTTTTCTGACGCATTCATCCCCCTGCTGCCCCAGGGAGAAGCAGTGCCTGGGCTGGGGA-CCTTTACAGTG---TCAGGGCCCGTGCACGTCTTTGCACACTGCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10645353 110 - 16319837 CTTGCTACCCTTTTCTGACGCATTCATCCCCCTGCTGCCCCAGGGAGAAGCAGTGCCTGGGCTGGGGA-CCTTTACAGTG---TCAGGGCCCGTGCACGGCTTTGCACACTGCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12269019 110 + 20526591 CTTGCTACCCTTTTCTGACGCATTCATCCCCCTGCTGCCCCAGGGAGAAGCAGTGCCTGGGCTGGGGA-CCTTTACAGTG---TCAGGGCCCGTGCACGGCTTTGCACACTGCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119240782 110 + 128539186 CTTGCTACCCTTTTCTGACGCATTCACCCCCCTGCTGCCCCAGGGAGAAGCAGTGCCTGGGCTGGGGA-CCTTTACAGTG---TCAGGGCCCGTGCACGGCTTTGCACACTGCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 582881 110 + 6255621 CTTGCTACCCTTTTCTGACGCATTCATCCCCCTGCTGCCCCAGGGAGAAGCAGTGCCTGGGCTGGGGA-CCTTTACAGTG---TCAGGGCCCGTGCACGGCTTTGCACACTGCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4618244 110 - 8658521 CTTGCTACCCTTTTCTGACGCACTCATCCCCCTGCTGCCCCAGGGAGAAGCAGTGCCTGGGCTGGGGA-CCTTTACAGTG---TCTGGGCCCGTGCACGGCTTTGCATACTGCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114818863 110 + 124281992 CTTGCTACCCTTTTCTGATGGGTTCATCCCCCTGCTGCCCCAGGGAGAAGCAGTGCCTGTG-GGGGGACCCTTCACAGTG---TCAGGTCCTGTGCATGGCTTTGCACGCTGCA i calJac3.chr9 I 283 I 5 s saiBol1.JH378194 463508 111 - 9212255 CTTGCTACCCTTTTCTGATGCATTCATCCCTCTGCTGCCCCAGGGAGAAGCAGTGCCTGGGCTGGGGACCCTTCACAGTG---TCAGATCCTGTGCACAGCTTTGCACGCTGTA i saiBol1.JH378194 I 325 I 5 s cebCap1.NW_016107484v1 2877891 111 + 4466143 CTTGCTACCCTTTTCTGATGCATTCGTCCCCCTGCTGCCCCAGGGAGAAGCAGTGCCTGGGCTGGGGACCCTTCACAGTG---TCAGGTCCTGTGCACGGCTTTGCACGCTGCA i cebCap1.NW_016107484v1 I 320 I 5 s aotNan1.NW_018491581v1 1585066 110 + 5364348 CTTGCTACCCTTTTCTGATGCATTCGTCCCCCTGCTGCCCCAGGGAGAAGCAGTGCCTGGG-CTGGGACCCTTCACAGTG---TCAGGTCCTGTGCACAGCTTTGCACGCTGCA i aotNan1.NW_018491581v1 C 0 I 6 s dasNov3.JH568189 843933 114 - 1116856 CTTGCTCCCCTTCTCTGATGCATTTGTCCTCCTGCTGCTGCAGTGAGAAACTCCTCCAGGGCCAGGGACACTTCGTGATGCCCCCAGGGCCCCTCCACAGCTCTGCACCCTGTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6723546 325 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I e otoGar3.GL873618 4308835 76 + 7922563 I a score=298267.000000 s hg38.chr12_KI270834v1_alt 74967 35 + 119498 -----AGTGCCAGTGCTGGCTTGTTAGCTGTGGAGATGGG s panTro5.chr12 127360971 35 + 137163284 -----AGTGCCAGTGCTGGCTTGTTAGCTGTGGAGATGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125712014 35 + 135337776 -----AGTGCCAGTGCTGGCTTGTTAGCTGTGGAGATGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8225377 35 - 8369578 -----AGTGCCAGTGCTGGCTTGTTAGCTGAGGAGATGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97883614 35 + 106955855 -----AGTGCCAGTGCTGGCTTGTTAGCTGTGGAGATGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123998777 35 + 133663169 -----AGTGCCAATGCTGGCTTGTTAGCTGTGGAGATGGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128246878 35 + 137757926 -----AGTGCCAATGCTGGCTTGTTAGCTGTGGAGATGGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10645463 35 - 16319837 -----AGTGCCAATGCTGGCTTGTTAGCTGTGGAGATGGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12269129 35 + 20526591 -----AGTGCCAATGCTGGCTTGTTAGCTGTGGAGATGGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119240892 35 + 128539186 -----AGTGCCAATGCTGGCTTGTTAGCTGTGGAGATGGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 582991 35 + 6255621 -----AGTGCCAATGCTGGCTTGTTAGCTGTGGAGATGGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4618354 35 - 8658521 -----AGTGCCAATGCTGGCTTGTTAGCTGTGGAAATGGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114818978 35 + 124281992 -----TCCCCCAGCACTGGCTTGTTAGCTGTGGAGATGGA i calJac3.chr9 I 5 C 0 s saiBol1.JH378194 463624 35 - 9212255 -----TCCCCCAGCACTGGCTTGTTAGCTGTGGAGATGGA i saiBol1.JH378194 I 5 C 0 s cebCap1.NW_016107484v1 2878007 35 + 4466143 -----TCGCCCAGCACTGGCTTGTTAGCTGTGGAGATGGA i cebCap1.NW_016107484v1 I 5 C 0 s dasNov3.JH568189 844047 40 - 1116856 GGCCCTCAGTAAACATTCACTTACTGATGGTGAAGGTGAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6723546 325 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I e otoGar3.GL873618 4308835 76 + 7922563 I e aotNan1.NW_018491581v1 1585176 6 + 5364348 I a score=1194396.000000 s hg38.chr12_KI270834v1_alt 75002 120 + 119498 TTCCGAG-------AGACCTTATCATGGGGGAGG---CAGAGCCTCTGCAGCCAGCATCTGTTTGTAG--AAGGCCTGCtg----cattcat-------------ctcccggggctgctctaacaaagcaccatgatctgggggctgaa--- s panTro5.chr12 127361006 120 + 137163284 TTCCGAG-------AGACCTTATCATGCGGGAGG---CAGAGCCTCTGCAGCCAGCATCTGTTTGTAG--AAGGCCTGCtg----cattcat-------------ctcccggggctgctgtaacaaagcaccatgatctgggggctgaa--- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125712049 120 + 135337776 TTCCGAG-------AGACCTTATCATGTGGGAGG---CAGAGCCTCTGCAGCcagcatctgtttgtag--aaggcctgctg----cattcat-------------ctcccggggctgctgtaacaaagcaccatgatctgggggctgaa--- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8225412 120 - 8369578 TTCCGAG-------AGACCTTATCATGGGGGAGG---CAGAGCCTCTGCAGCCAGCATCTGTTTGTAG--AAGGCCTGCtg----cattcat-------------ctcccggggctgctgtaacaaagcaccatgatctgggggctgaa--- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97883649 120 + 106955855 TTCCGAG-------AGACCTTAGCATGAGGGAGG---CAGAGCCTCTGCAGCCAGCATCTGTTTGTGG--AAGGCCTGCtg----cattcac-------------ctcctggggctgctgtaacaaagcaccatgatctgggggctgaa--- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123998812 120 + 133663169 TTCCGAG-------AGACCTTAGCATGGGGGAGG---CAGAGCCTCTGCAGCCAGCCTCTGTTTGCAG--AAGGCCTGCTG----CATGCAt-------------ctcctggggctgctgtaacaaagcaccgtgatctgggggctgaa--- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128246913 120 + 137757926 TTCCGAG-------AGACCTTAGCATGGGGGAGG---CAGAGCCTCTGCAGCCAGCCTCTGTTTGCAG--AAGGCCTGCTG----CATGCAt-------------ctcctggggctgctgtaacaaagcaccgtgatctgggggctgaa--- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10645498 120 - 16319837 TTCCGAG-------AGACCTTAGCATGGGGGAGG---CAGAGCCTCTGCAGCCAGCCTCTGTTTGCAG--AAGGCCTGCTG----CATGCAt-------------ctcctggggctgctgtaacaaagcaccgtgatctgggggctgaa--- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12269164 120 + 20526591 TTCCGAG-------AGACCTTAGCATGGGGGAGG---CAGAGCCTCTGCAGCCAGCCTCTGTTTGCAG--AAGGCCTGCTG----CATGCAt-------------ctcctggggctgctgtaacaaagcaccatgatctgggggctgaa--- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119240927 120 + 128539186 TTCCGAG-------AGACCTTAGCATGGGGGAGG---CAGAACCTCTGCAGCCAGCCTCTGTTTGCAG--AAGACCTGCtg----catgcat-------------ctcctggggctgctgtaacaaagcaccgtgatctgggggctgaa--- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 583026 120 + 6255621 TTCCGAG-------AGACCTTAGCATGGGGGAGG---CAGAGCCTCTGCAGCCAGCCTCTGTTTGCAG--AAGGCCTGCtg----catgcat-------------ctcctggggctgctgtaacaaagcaccgtgatctgggggctgaa--- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4618389 120 - 8658521 TTCTGAG-------AGACCTTAGCATGGGGGAGG---CAGAGCCTCTGCAGCCAGCCTCTGTTTGCAG--AAGGCCTGCtg----catgcat-------------ctcctgcggctgctgtaacaaagcaccgtaatctgggggctgaa--- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114819013 120 + 124281992 TTCCAAG-------AGACCGTAGCATGGGGGAGG---CAGAACCTCTGCAGCTGGCATCCGTTGGCAG--AAGGCCTGCtg----cattcgc-------------ctcctggggctgctgtagcaaagcaccatgacctgggggctgaa--- i calJac3.chr9 C 0 I 1 s saiBol1.JH378194 463659 120 - 9212255 TTCCAAG-------AGACCGTAGCCTGGGGGAGG---CGGAGCCTCTGCAGTCAGCATCTGTTGGCAG--AAGGCCTGCtg----cattcgc-------------ctcctggggctgctgtaacaaagcaccccgacctgggggctgaa--- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2878042 120 + 4466143 TTCCAAG-------AGACCGTAGCCTGGGGGAGG---CAGAGCCTCTGCAGCCAGCATCTGTTGGCAG--AAGGCCTGCtg----cattcgc-------------ctcctggggctgctgtaacaaagcacgacgacctgggggctgaa--- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1585182 124 + 5364348 CTCCAAG-------AGACCGCAGCATGGGAGAGG---CAGAGCCTTTGCTGCCAGCATCTGTTGGCAG--AAGGCCTGCTGCATTCattcgc-------------ctcctggggctgctgtaacaaagcaccacgacctgggggctgaa--- i aotNan1.NW_018491581v1 I 6 C 0 s dasNov3.JH568189 844087 137 - 1116856 TTCTGTGACGGCGCAGCACCCAGCATGGAGGCAGTACTAGAGCGTTTGGattgaacacctactagatgccaagccgtgttt----caggcattggagatacagccctctgggagacacta---------acccccaagtgagg--tgaagca i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6723546 325 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I e otoGar3.GL873618 4308835 76 + 7922563 I a score=905966.000000 s hg38.chr12_KI270834v1_alt 75122 176 + 119498 aacaacagacatttatttttttaaattaatta----att--aatttatttttt--------------------tgagacagag----------------------tctc---------gctctgtcacctaggctggagtgcagtggcgcgat---------------------------------------------------ctcggctcactgcaacctctgcctcctgggtttaagcgattct----cctgcctca-------------gcct-----cctgagtagctgggattacaggtg s panTro5.chr12 127361126 174 + 137163284 aaca--agacatttatttttttgaattaatta----att--tatttatttttt--------------------tgagacggag----------------------tctc---------gctctgtcacctaggctggagtgcagtggcgcgat---------------------------------------------------ctcggctcactgcaacttctgcctcctgggtttaagcgattct----cctgcctca-------------gcct-----cctgagtagctgagattacaggcg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125712169 174 + 135337776 aaca--agacatttatttttttaaattaatta----att--tatttatttttt--------------------tgagacggag----------------------tctc---------gctctgtcacctaggctggagtgcagtggcgcgat---------------------------------------------------ctcggctcactgcaacttctgcctcctgggtttaagcgattct----cctgcctca-------------gcct-----cctgagtagctgagattacaggcg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8225532 176 - 8369578 aacaacagacatttatttttttaaattaatta----att--aattaatttttt--------------------tgagacggag----------------------tctc---------gctctgtcacctaggctggagtgcagtggcgcgat---------------------------------------------------ctcggctcactgcaacctctgcctcctgggtttaagcgattct----cctgcctca-------------gcct-----cctgagtagctgggattacaggtg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97883769 180 + 106955855 aataacagacatttattttttttaattagttaatttatt--tatttatttttt--------------------tgagacggag----------------------tctt---------gctctgtcacctaggctggagtgcagtggcaccat---------------------------------------------------cttggctcactgcaacctctgcctcctgggtttaagcgattct----cctgcctca-------------gcct-----cctgagtagctggcattactggtg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123998932 176 + 133663169 aacaacagacatttagtttttAAAATTAATTA----ATT--AAttttttttct--------------------tcagatggag----------------------tctc---------gctctgtcacccaggctggagtgcagtggcgccat---------------------------------------------------ctcagctcactgcaacctctgcctcctgggttcaagtgattct----cctgcctca-------------gcct-----cctgagtagctgggactacaggcg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128247033 176 + 137757926 aacaacagacatttagtttttaaaattaatta----att--aattttttttct--------------------tcagatggag----------------------tctc---------gctctgtcgcccaggctggagtgcagtggcgccat---------------------------------------------------ctcagctcactgcaacctctgcctcctgggttcaagtgattct----cctgcctca-------------gcct-----cctgagtagctgggactacaggcg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10645618 176 - 16319837 aacaacaggcatttagtttttAAAATTAATTA----ATT--AAttttttttct--------------------tcagatggag----------------------tctc---------gctctgtcgcccaggctggagtgcagtggcgccat---------------------------------------------------ctcagctcactgcaacctccgcctcccgggttcaagccattct----cctgcctca-------------gcct-----cctgagtagctgggactacaggcg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12269284 176 + 20526591 aacaacagacatttagtttttAAAATTAATTA----ATT--AAttttttttct--------------------tcagacggag----------------------tctc---------gctctgtcgcccaggctggagtgcagtggcgccat---------------------------------------------------ctcagctcactgcaacctctgcctcctgggttcaagcgattct----cctgcctca-------------gcct-----cctgagtagctgggactacaggcg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119241047 176 + 128539186 aacaacagacatttagtttttaaaattaattt----att--tattttttttct--------------------tcagacggag----------------------tctc---------gctctgtcgcccaggctggagtgcagtggcgcaat---------------------------------------------------ctcagctcactgcaacctctgcctcctgggttcaaacaattct----cctgcctca-------------gcct-----cctgagcagctgggactacaggca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 583146 171 + 6255621 aacaacagacatttagtttttaaaattaa---------t--taatttttttct--------------------tcagacggag----------------------tctc---------gctctgtcgcccaggctggagtgcagtggcgccat---------------------------------------------------ctcagctcactgcaacctctgcctcctgggttcaagcgattct----cctgccaca-------------gcct-----cctgagtagctgggactacaggcg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4618509 176 - 8658521 aacaacagacatttagtttttaaaattaatta----att--aattatttttct--------------------tgagacgtag----------------------tctc---------gctctgtcgcccaggctggagtgcagtggcgccat---------------------------------------------------ctcagctcactgcaacctctgcctcctgggttcaagcaattct----cctgcctca-------------gcct-----cctgagtagctgggactacaggca i colAng1.NW_012116043v1 C 0 C 0 s dasNov3.JH568189 844224 304 - 1116856 gacaatcgacaagtcaataattaaatgaaatgtcagattgggattagtttcatgaaggaaataaacagcatgatgagataaagagtggtggggCGGGCAGGCCACTCTCGAGGGGCTGGCTCTGGAGTTGGGCCTGATGAGCCTCGGCGAGGTGCTGAAGAGGCAGAGGAGAGCTTAGTGGGCCAGGGAGCAGGAAGGGCAGCCCCCGGGCCACGGCGGCCTCAGCCCTCATGG-CCAAGTGGTGCTGGGAACTGCCTCACAGCTGTGGGTCGGACTGTGGGACAGGGTGGGTGGGAC-ACAGGTG i dasNov3.JH568189 C 0 I 39 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6723546 325 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I e otoGar3.GL873618 4308835 76 + 7922563 I e aotNan1.NW_018491581v1 1585306 0 + 5364348 C e cebCap1.NW_016107484v1 2878162 0 + 4466143 C e saiBol1.JH378194 463779 0 - 9212255 C e calJac3.chr9 114819133 1 + 124281992 I a score=250492.000000 s hg38.chr12_KI270834v1_alt 75298 44 + 119498 cccgtcaccacgcctagctaatttttgtatttttagtagagacg s panTro5.chr12 127361300 44 + 137163284 cctgtcaccacgcctagctaatttttgtatttttagtagagacg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125712343 44 + 135337776 cctgtcaccacgcctagctaatttttgtatttttagtagagacg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8225708 44 - 8369578 cccgtcaccatgcctagctaatttttgtatttttagtagagacg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97883949 44 + 106955855 cccatcaccacacccagctaatttttgtatttttactagagacg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123999108 44 + 133663169 cccatcaccacgcccagctaatttttgtatttttagtagagaca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128247209 44 + 137757926 cccatcaccacgcccagctaatttttgtatttttagtagagaca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10645794 44 - 16319837 cccatcaccacgcccagctaatttttgtatttttagtagagaca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12269460 44 + 20526591 cccatcaccacgcccagctaatttttgtatttttagtagagacg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119241223 44 + 128539186 cccatcactacgcccagctaatttttgtatttttagtagagaca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 583317 44 + 6255621 cccgccaccacgcccagctaatttttgtatttttagtagagacg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4618685 44 - 8658521 cccatcaccatgcccagctaatttttgtatttttagtagagaca i colAng1.NW_012116043v1 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6723546 325 - 9870158 I e dasNov3.JH568189 844528 39 - 1116856 I e canFam3.chr26 33160646 678 - 38964690 I e otoGar3.GL873618 4308835 76 + 7922563 I e aotNan1.NW_018491581v1 1585306 0 + 5364348 C e cebCap1.NW_016107484v1 2878162 0 + 4466143 C e saiBol1.JH378194 463779 0 - 9212255 C e calJac3.chr9 114819133 1 + 124281992 I a score=632457.000000 s hg38.chr12_KI270834v1_alt 75342 110 + 119498 gggtttc------------------------------------gccatgttggcc-aggctgatcccgaactcccaaccttaggtgatctacctgcctcggcctcccaaag-tgctg-------ggattacaggtgtgagccaccatgcctggcc s panTro5.chr12 127361344 110 + 137163284 gggtttc------------------------------------gccatgttggcc-aggctggtcccgaactcccaaccttaggtgatctacctgcctcggcctcccaaag-tgctg-------ggattacaggtgtgagcctccatgcctggcc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125712387 110 + 135337776 gggtttc------------------------------------gccatgttggcc-aggctggtcccgaactcccaaccttaggtgatctacctgcctcggcctcccaaag-tgctg-------ggattacaggtgtgagccaccatgcctggcc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8225752 109 - 8369578 gggtttc------------------------------------gccatgttggcc-aggctggtcccgaact-ccaaccttaggtgatctacctgcctcggcctcccaaag-tgctg-------ggattacaggcgtgagccaccatgcctggcc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97883993 110 + 106955855 gggtttt------------------------------------gccatgttggcc-aggctggtcccaaactcccaaccttaggtgatccacctgcctcgacctcccaaag-tgctg-------ggattacaggcgtgagccaccacgcctggcc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123999152 110 + 133663169 gggtttc------------------------------------tccatgttggcc-aggctggtccccaactcccaaccttaggtgatccacctgcctcggcctcccaaag-tgctg-------ggattacaggtgtgagccaccacgcccggcc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128247253 110 + 137757926 gggtttc------------------------------------tccatgttggcc-aggctggtccccaactcccaaccttaggtgatccacctgcctcggcctcccaaag-tgctg-------ggattacaggtgtgagccaccacgcccggcc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10645838 110 - 16319837 gggtttc------------------------------------tccatgttggcc-aggctggtccccaactcccaaccttaggtgatccacctgcctcggcctcccaaag-tgctg-------ggattacaggtgtgagccaccgcacccggcc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12269504 110 + 20526591 gggtttc------------------------------------tccatgttggcc-aggctggtcctgaactcccaaccttaggtgatccacctgcctcggcctcccaaag-tgctg-------ggattacaggtgtgagccaccacgcccggcc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119241267 110 + 128539186 gggtttc------------------------------------tccatgttggcc-aggctggtcccgaactcccaaccttaggtgatccacctgcctcggcctcccaaag-tgctg-------ggattacaggtgtgagccaccacgcccggcc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 583361 110 + 6255621 gggtttc------------------------------------tccatgttggcc-aggctggtcccgaactcccaaccttaggtgatccacctgcctcggcctcccaaag-tgctg-------ggattacaggtgtgagccaccacgcccggcc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4618729 110 - 8658521 gggtttc------------------------------------tccatgttggca-aggctggtcccgaactcccaaccttaggtgatccacctgcctcggcctccctaag-tgctg-------ggattacaggcgtgagccgccacgcccggcc i colAng1.NW_012116043v1 C 0 C 0 s dasNov3.JH568189 844567 145 - 1116856 GGGTTTCTGTGCTGCCGTGCACACTGAAGGGCTGCCCATGGCTTCCCTGTTGGCTGAAGCTTGT---------CAGGCCTCCTCTGACAGCCCtgtctttatttcccggggctgctgtaacacaggatcacagatcacagatctggtggcttaa- i dasNov3.JH568189 I 39 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6723546 325 - 9870158 I e canFam3.chr26 33160646 678 - 38964690 I e otoGar3.GL873618 4308835 76 + 7922563 I e aotNan1.NW_018491581v1 1585306 0 + 5364348 C e cebCap1.NW_016107484v1 2878162 0 + 4466143 C e saiBol1.JH378194 463779 0 - 9212255 C e calJac3.chr9 114819133 1 + 124281992 I a score=13923.000000 s hg38.chr12_KI270834v1_alt 75452 1 + 119498 a s panTro5.chr12 127361454 1 + 137163284 a i panTro5.chr12 C 0 C 0 s panPan2.chr12 125712497 1 + 135337776 a i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8225861 1 - 8369578 a i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97884103 1 + 106955855 a i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123999262 1 + 133663169 a i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128247363 1 + 137757926 a i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10645948 1 - 16319837 a i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12269614 1 + 20526591 a i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119241377 1 + 128539186 a i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 583471 1 + 6255621 a i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4618839 1 - 8658521 a i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 463779 1 - 9212255 a i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2878162 1 + 4466143 a i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1585306 1 + 5364348 a i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4308911 1 + 7922563 a i otoGar3.GL873618 I 76 C 0 s canFam3.chr26 33161324 1 - 38964690 a i canFam3.chr26 I 678 C 0 s dasNov3.JH568189 844712 1 - 1116856 a i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6723546 325 - 9870158 I e calJac3.chr9 114819133 1 + 124281992 I a score=2259329.000000 s hg38.chr12_KI270834v1_alt 75453 209 + 119498 acaacagaaatttattctctcacagttctggaggccaaagtctgacatcaaggtgc---caggaccatgctccctctgaaagctctagggga--a-----------gcctctt--ccagcttcttgggg-ttgttggcagcccttggtattccttagcttagcttataaatgcaccactccagcgtctgtctccattgccacacgcccctcttccctgtgtgtctgca s panTro5.chr12 127361455 209 + 137163284 acaacagaaatttattgtctcacagttctggaggccgaagtctgacatcaaggtgc---caagaccatgctccctctgaaagctctagggga--a-----------gcctctt--ccagcttcttgggg-ttgttggcagcccttggtattccttagcttagcttataaatgcaccactccagtgtctgtctccattgccacacgcccctcttccctgtgtgtctcca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125712498 209 + 135337776 acaacagaaatttattgtctcacagttctggaggccgaagtctgacatcaaggtgc---caagaccatgctccctctgaaagctctagggga--a-----------gcctctt--ccagcttcttgggg-ttgttggcagcccttggtattccttagcttagcttataaatgcaccactccagtgtctgtctccattgccacacgcccctcttccctgtgtgtctcca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8225862 209 - 8369578 acaacagaaatttattgtctcacagttctggaggcggaagtctgacatcaaggtgc---caggaccatgctccctctgaaagctctagggga--a-----------gcctctt--ccagcttcttgggg-ttgttggcagcccttggtattccttagcttagcttataaatgcaccactctagtgtctgtctccattgccacatgcccctcttccctgtgtgtctcca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97884104 209 + 106955855 acaacagaaatttattctctcacagttctggaggccgaagtctgacatcaaggtgc---caggaccatgctccctctgaaggctctagggaa--a-----------gcctctt--ccagcttcttgggg-ttgttggcagcccttggcactccttagcttagcttataaatgcaccactccagtgtctgtctccattgccacatgcccctcttccctgtgtgtctcca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123999263 220 + 133663169 acaacggaaatgtattctctcacagttctggaggccgaagtctgacatcaaggtgc---cgggaccacgctccctctgaagactctagggga--ggactctttcatgcccctt--ccagcttcccaggg-ttgttggcagcccttggtattccttagcttagcttataaatgcaccgctccagtgtctgtctccattgccacacgcccctcttccctgtgtgtctcca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128247364 220 + 137757926 acaacggaaatgtattctctcacagttctggaggccgaagtctgacatcaaggtgc---cgggaccacgctccctctgaagactctagggga--agactctttcatgcccctt--ccagcttcccaggg-ttgttggcagcccttggtattccttagcttcgcttataaatgcaccgctccagtgtctgtctccattgccacacgcccctcttccctgtgtgtctcca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10645949 220 - 16319837 acaacggaaatggattctctcacagttctggaggccgaagtctgacatcaaggtgc---cgggaccacgctccctctgaagactctagggga--agactctttcatgcccctt--ccagcttcccaggg-ttgttgacagcccttggtattccttagcttagcttataaatgcaccgctccagtgtctgtctccattgccacacgcccctcttccctgtgtgtctcca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12269615 219 + 20526591 acaacggaaatgtattctctcacagttctggaggccgaagtctgacatcaaggtgc---cgggaccacg-tccctctgaaggctctagggga--agactctttcatgcccctt--ccagcttcccaggg-ttgttggcagcccttggtattccttagcttagcttataaatgcaccgctccagtgtctgtctccattgctacacgcccctcttccctgtgtgtctcca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119241378 222 + 128539186 acaacagaaatttattctctcacagttctggaggccgaagtctgacatcaaggtgc---cgggaccacgctccctctgaaggctctaggggaagagactctttcatgcctctt--ccagcttctcaggg-ttgtcggcagcccttggtattccttagcttagcttataaatgcaccgctccagtgtctgtctccattgccacatgcccctcttccctgtgtgtctcca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 583472 220 + 6255621 acaacggaaatgtattctctcacagttctgaaggccgaagtctgacatcaaggtgc---cgggaccacgctccctctgaaggctctagggga--agactctttcatgcccctt--ccagcttcccaggg-ttgttgatagcccttggtattccttagcttagcttataaatgcaccgctccagtgtctgtctccattgccacacgcccctcttccctgtgtgtctcca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4618840 220 - 8658521 gcaacggaaatttattctctcacagttctggaggccgaagtctgacgtcaaggtgc---caggaccacgctccctctgaaggttctggggga--agaatctttcatgcctctt--ccagcttctcaggg-ttgttggcggcccttggtattccttagcttagcttataaatgcaccactccagtgtctgtctccactgccacacgcccctcttccctgtgtgtctcca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114819134 215 + 124281992 acaacagaaatgtatcctctggcagttctggaggc-ggagtctaacatcaaggttc---caggaccatgctccctctcaaggctctagggga--c---tctctcctgcctctt--ccagcttccagcag-ttgttggcaacccttggcattccttagcttagcttgtaaatgcactgctc-agtgtctgtgtccattgccacgtgcccttcttccctgtgtgtctcca i calJac3.chr9 I 1 C 0 s saiBol1.JH378194 463780 213 - 9212255 acaacagaaatgtattctctggcagttctggaggc-agagtctgacatcaagttgc---caggcccatgctccctctcagggctctagggga-------ctctcatgcctctt--ccagcttccagcgg-ttgctggcaacccttggcattccttagcttagcttgtaaatgcaccgctc-agcatctgtgtccatcgccacgttcccttcctccctgtgtgtctcca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2878163 213 + 4466143 acaacagaaatgtgttctctggcagttctggaggc-ggagtctgacatcaaggtgc---caggaccatgctccctctcgaggctctagggga--c---tctttcctgcctctt--ccagcttccagagg-ttgctggcaaaccttggcattccttagcttagc-tgtaaatgcaccgctc-agcgtctgtgtccatcgctacatgcccttctt-cctgtgtgtctcca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1585307 215 + 5364348 acaacagaaacatattctctggcagttctggaggc-ggagtctgacatcaaggcgc---caggaccatgctccctctcaaggctctagggga--c---tctctcctgcctctt--ccagcttccagtgg-ttgttggcaacccttggcattccttagcttagcttgtaactgcactgctc-agtgtctgtgtccatcgccacgtgcccttcttccctgtgtgtctcca i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4308912 170 + 7922563 acaacaaacatgtatt-tctcacagttctggtggcca-----------caag-------------------------------tctggagag--ctgtcatgtcttgtctctt--ctagcttctagtgg-ttgctggaagtacctggctgtcct----------tgtaggtgcatcaccgtgctctctgcctccatcgtcacatgaaccttttgcctatgtgtcttca i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33161325 206 - 38964690 acaacagaagtttagtctctcacaggtctggaggtcaaagtctgaaatcaaggtgtcagcagggccatgttccctccaaaggttctagggga--ggacccctccttgcctctt--gcagcctctggtggtttgctggcaatcgttgg---------------cttttaggttcatctc---aatgtctggtgccattggcacattaccttcttccctctatgtctttg i canFam3.chr26 C 0 I 8 s dasNov3.JH568189 844713 208 - 1116856 acaacatgagccgattctcttcctgctctggaagctggaactctggatccaggtgt-ggcagggccatgtcccctctgaaacctgcagggga--g-gctcttcctggcctctttcctggctcctggtgg-ctgccacca-tccttggcgtgcctcagca------------gtgtctctccagcctctgcctccatcttcctgtgacctcttcccctgggtgactg-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e mm10.chr5 124812770 241 + 151834684 I e proCoq1.NW_012154285v1 6723546 325 - 9870158 I a score=1869119.000000 s hg38.chr12_KI270834v1_alt 75662 160 + 119498 catgg----ccttctgatagggaccccaggcattggatttagggcccaccctcaccccgtatgacctaatcttaactaattccatctacaaaga-cccacttccaaataaggtcacatc-ctgaggtCCCA-G---------TGGGCACGAATCTTGGTGG---GGTGACACTGTTCA---------A s panTro5.chr12 127361664 160 + 137163284 catgg----ccttctgatagggaccccaggcattggatttagggcccaccctaaccccgtatgacctaatcttaactaattccatctacaaaga-cccacttccaaataaggtcacatc-ctgaggtccca-g---------taggcacgaatcttggtgg---ggtgacactgttca---------a i panTro5.chr12 C 0 C 0 s panPan2.chr12 125712707 160 + 135337776 catgg----ccttctgatagggaccccaggcattggatttagggcccaccctaaccccgtatgacctaatcttaactaattccatctacaaaga-cccacttccaaataaggtcacatc-ctgaggtccca-g---------taggcacgaatcttggtgg---ggtgacactgttca---------a i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8226071 159 - 8369578 catgg----ccttctgatagggaccccaggcattggatttagggcccaccctaaccccgtatgacctaatcttaactaattccatctacaaaga-cccacttccaaataaggtcacatc-ctgaggtccca-g---------tgggcacgaatcttggt-g---ggtgacactgttca---------a i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97884313 161 + 106955855 cgtgg----ccttctgatagggaccccaggcattggatttagggcccaccctaaccccgtatgacctaatcttaactaattccatctacaaagaccccacttccaaataaggtcacatc-ctgaggtCCCA-G---------TGGGCACGAATCTTGGTGG---GGCAACACTGTTCA---------A i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123999483 161 + 133663169 catgg----ccttctgatagggaccccaggcactggatttagggcccaccctaaccccgtatgacctaatcttaactaatttcatctacaaagaccccacttccaaataaggtcacatc-ctgaggtccca-g---------tgggcacgaattttggtgg---ggtgacactgttca---------a i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128247584 161 + 137757926 catgg----ccttctgctagggaccccaggcactggatttagggcccaccctaacctcgtatgacctaatcttaactaatttcatctacaaagaccccacttccaaataaggtcacatc-ctgaggtccca-g---------tgggcacgaattttggtgg---ggtgacactgttca---------a i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10646169 161 - 16319837 catgg----ccttctgatagggaccccaggcactggatttagggcccaccctaaccccgtatgacctaatcttaactaatttcatctacaaagaccccacttccaaataaggtcacatc-ctgaggtccca-g---------tgggcacgaattttggtgg---ggtgacactgttca---------a i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12269834 161 + 20526591 catgg----ccgcctgatagggaccccaggcaccggatttagggcccaccctaaccccgtatgacctaatcttaactaatttcatctacaaagaccccacttccaaataaggtcacatc-ctgaggtccca-g---------tgggcacgaattttggtgg---cgtgacactgttca---------a i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119241600 161 + 128539186 catgg----ccttctgatagggaccccaggcactggattgagggcccaccctaaccccgtatgacctaatcttaactaatttcatctacaaagaccccacttccaaataaggtcacatc-ctcaggtccca-g---------tgggcacgaattttggtgg---ggtgacactgttca---------a i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 583692 161 + 6255621 catgg----ccttctgatagggaccccaggcactggatttagggcccaccctaaccccgtatgacctaatcttaactaatttcatctacaaagaccccacttccaaataaggtcacatc-ctgaggtccca-g---------tgggcacgaattttggtgg---ggtgacactgttca---------a i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4619060 161 - 8658521 catgg----ccttctgatagggaccccaggcactggatttagggcccaccctaaccctgtgtgacctaatcttaactgattccatctacaaagaccccacttccaaataaggtcacatc-ctgaggtccca-g---------tggacacgaattttggtgg---ggtgacactgctca---------a i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114819349 162 + 124281992 catga----ccttctgagagggaccccaggcactggatttaggggccacgctaaccctgtgtggcctaatcttaaccaattccatctccaaagactccacttccaaataaggtcacatc-ctgatgtccca-g---------tgggcacgaattttggtgg--gggagacactgttca---------a i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 463993 163 - 9212255 tatga----ccttctgagagggaccccaggcattggatttaggggccaccctcactccgtgtgccccaatcttaactaattccatctacaaagactccatttccaaataaggtcacatc-ctgatgtccca-g---------tgggcacgaattttggtgg-aggggggcattgttca---------a i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2878376 159 + 4466143 cgtga----ccctctgagaggaatcccaggcactggatttagggccc---ctcaccctgtgttgcctaatcttaactaattccatctacaaagactccatttccaaatcagatcacatc-ctcatgtccca-g---------tgggcacgaattttggtgg--ggggcacactgttca---------a i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1585522 164 + 5364348 catga----ccttctgagagggaccccaggcattggatttaggggccaccctaaccctgtgtggcctaatcttaactaattccatctacaaagactccacttccaaataaggtcacatc-ctgatgttcca-g---------tgggcacaaattttggtgggggggggacactgttca---------a i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4309082 169 + 7922563 tatgg----cctttttagatagacgccagtcattggatttggggtccaccctagcca-gtatgacctcatcttaacaaattacatccacaaagaccttctttccaaattaggttacatt-ctgaggATCCAGG---------TAGACACGCAT-TTGGGGG---AGGGGCAATATCCAGCTCAATGCA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124813011 142 + 151834684 CATGG-----cttctcatgaggtcaccagatactggaacagatctgttccccaagccagtgtgacctcatctttgataaggacatct-------------tttccaataaggtctcaactttgaggCTCCA-G---------TGGCTTTAACCCC---------AGGGCCACTGTCTG---------T i mm10.chr5 I 241 C 0 s canFam3.chr26 33161539 167 - 38964690 tgcag----tctttttataaggacacaagccattggatttaggacccaccctaacccagtaagacctcatggggactaattagatgtacaaagaccctctttccaaataaggtcacatt-ctgaggctgcggg---------tgggcatggattatggggg-------acactgttcaacacaGTTca i canFam3.chr26 I 8 C 0 s dasNov3.JH568189 844921 163 - 1116856 cctggctccctttcttgtaagacatgcatcctgttggatcagggcccactttcatctagtgtgtcct-----caactcatcacatcttcaaagaccctctttccacat-aggtcccatc-atg-ggcctga-gggttagacttgaacatgtgttttt-------ggagacacagttca---------a i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e proCoq1.NW_012154285v1 6723546 325 - 9870158 I a score=3837470.000000 s hg38.chr12_KI270834v1_alt 75822 389 + 119498 ACCACTGTGAGCC---AAGCCCTGCTCTAGGTTTTGGGGTTCCGGCCCTCGGGGAGGTGCTGACATCCTAGTGAGTGAGGGCACCCAGGCAGTGAATCAGCCAGTGGTGAAATGAAACTT-CCGATTGCGATTGGTGTCATGAAGCAAGTCAGCAAGGAAGGGAG-AGAGAGGACGAC-A--G-AGGGGCAGG--CTCCTTAGA--GGGTGGCTCT--GGCTGGGCCCGAGTGAGCGTAGGAAGAGGCGATGAGAGGCAGA-AGGAGGAGATCGCAG--------------GGAGCCGGTAAGC-AGGAGGGGGACCCCAGCATCCTCACTGAAC----------------ACCGGCGAGGCAGGG-----------CTGGGGGCTATCAGGAGCCATGGGATTTGTCCTGGA-TGGAGTGGGTGGGACACAGGTG--------GGCCAGTTGAGG s panTro5.chr12 127361824 389 + 137163284 accacTGTGAGCC---AAGTCCTGCTCTAGGTTTTGGGgttctggccctcggggaggtgctgacatcctagtgagtgagggcacccagacagtgaatcagccaatggtgaaatgaaactt-ctgattgcgattggtgtcataaagcaagtcagcaaggaagggag-agagagggcgac-a--g-aggggcagg--CTCCTTAGA--GGGTGGCTCT--GGCTGGGCCCAAATGAGCATAGGAAGAGACGATGAGAGGCAGA-AGGAGGAGATCGCAG--------------GGAGCCGGTAAGC-AGAAGGGGGACCCCGGCATCCTCAGTGAAC----------------ACCGGCGAGGCAGGG-----------CTGGGGGCTATCAGGAGCCATGGGATTTGTCCTGGA-TGGAGTGGGTGGGACACAGGTG--------GGCCAGTTGAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125712867 389 + 135337776 accactgtgagcc---aagtcctgctctaggttttggggttctggccctcggggaggtgctgacatcctagtgagtgagggcacccagacagtgaatcagccaatggtgaaatgaaactt-ctgattgcgattggtgtcataaagcaagtcagcaaggaagggag-agagagggcgac-a--g-aggggcagg--CTCCTTAGA--GGGTGGCTCT--GGCTGGGCCCAAATGAGCGTAGGAAGAGGCGATGAGAGGCAGA-AGGAGGAGATCGCAG--------------GGAGCCGGTAAGC-AGAAGGGGGACCCCGGCATCCTCAGTGAAC----------------ACCGGCGAGGCAGGG-----------CTGGGGGCTATCAGGAGCCATGGGATTTGTCCTGGA-TGGAGTGGGTAGGACACAGGTG--------GGCCAGTTGAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8226230 389 - 8369578 accacTGTGAGCC---AAGCCCTGCTCTAGGTTTTGGGGTTCCGGCCCTCGGGGAGGTGCTGACATCCTAGTGAGTGAGGGCACCCAGGCAGTGAATCAGCCAATGGTGAAATGAAACTT-CCGATTGCGATTGGTGTCATGAAGCAAGTCAGCAAGGAAGGGAG-AGAGAGGACGAC-A--G-AGGGGCAGG--CTCCGTAGA--GGGTGGCTCT--GGCTGGGCCCGAATGAGCGTAGGAAGAGGTGATGAGAGGCAGA-AGGAGGAGATCGCAG--------------GGAGCTGGTAAGC-AGGAGGGGGACCCCAGCATCCTCAGTGAAC----------------ACCGGCGAGGCAGGG-----------CTGGGGGCTATCAGGAGCCATGGGATTTGTCCTGGA-TGGAGTGGGTGGGACACAGGTG--------GGCCAGTTGAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97884474 389 + 106955855 ACCACTGTGAGCC---AAGCCCTGCTCTAGGTTTTGGGGTTCTGGCCCTCAGGGAGGTACTGACATCCTAGTGAGTGAGGGCACCCAGACAGTGAATCAGCCAATGGTGAGATGAAACTT-CCGATTGCTGTCGGTGTCATGAAGCAAATCAGCAAGGAAGGGAG-AGAGAGGGCCAC-A--G-AGGGGCAGG--CTCCTTAGA--GGGCGGCTCT--GGCTGGGCCCGAGTGAGCGTAGGAAGAGGCGACGAGAGGCAGA-AGGAGGAGATCACAG--------------GGAGCCAGTAAGC-AGAAGGGGGCCCCCGGCATCCTCAGTGAAC----------------ACCGGCGAGGCAGGG-----------CTGGGGGCTATCAGGAGCCATGGGATTTATCCTGGA-TGGAGTGGGTGGGACACAGGTG--------GGCCAGTTGAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 123999644 388 + 133663169 accacTGTGAGCC---AAGCCCTGCTCTAGGTTTTGGGgttccagccctcggggaggtattgacatcctagtgagtgagggcacccagacagtgaatcagtcaacggtgaagtgaaacttcccgattgtgatcggtgtcatgaagcaaatcggcaaggcagggag-agagaaggcgac-a-----ggggCAGC--CTCGTTAGA--GGGCGGTTCT--GGCTGGGCCAAAGTGAGCGTAGGAAGAGGTGATGAGAGGCAGA-AGGAGGAGATCGCAG--------------GGAGCCAGTAAGC-GGAAGGGGGCCCCCGGCATCCTTAGTGAAC----------------ACCGGCGAGGCAGGG-----------CTGGGGGCTATCAGGAACCACGGGATTTGTCCTGGA-TGGAGTGGATGGGACACAGGTG--------GGCCAGTTGAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128247745 388 + 137757926 accaCTGTGAGCC---AAGCCCTGCTCTAGGTTTTGGGGTTCCAGCCCTCGGGGAGGTATTGACATCCTAGTGAGTGAGGGCACCCAGACAGTGAATCAGTCAACGGTGAAGTGAAACTTCCCGATTGTGATCGGTGTCATGAAGCAAATCGGCAAGGCAGGGAG-AGAGAAGGCGAC-A-----GGGGCAGC--CTCGTTAGA--GGGCGGCTCT--GGCTGGGCCAAAGTGAGCGTAGGAAGAGGTGATGAGAGGCAGA-AGGAGGAGATCACAG--------------GGAGCCAGTAAGC-GGAAGGGGGCCCCCGGCATCCTTAGTGAAC----------------ACCGGCGAGGCAGGG-----------CTGGGGGCTATCAGGAACCACGGGATTTGTCCTGGA-TGGAGTGGATGGGACACAGGTG--------GGCCAGTTGAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10646330 388 - 16319837 accacTGTGAGCC---AAGCCCTGCTCTAGGTTTTGGGgttccagccctcggggaggtattgacatcctagtgagtgagggcacccagacagtgaatcagtcaacggtgaagtgaaacttcccgattgtgatcggtgtcatgaagcaaatcggcaaggcagggag-agagaaggcgac-a-----ggggCAGC--CTCGTTAGA--GGGCGGCTCT--GGCTGGGCCAAAGTGAGCGTAGGAAGAGGTGATGAGAGGCAGA-AGGAGGAGATCGCAG--------------GGAGCCAGTAAGC-GGAAGGGGGCCCCCGGCATCCTTAGTGAAC----------------ACCGGCGAGGCAGGG-----------CTGGGGGCTATCAGGAACCACGGGATTTGTCCTGGA-TGGAGTGGATGGGACACAGGTG--------GGCCAGTTGAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12269995 389 + 20526591 accacTGTGAGCC---AAGCCCTGCTCTAGGTTTTGGGgttccagcccttggggaggtgttgacatcctactgagtgagggcacccagacagtgaatcagtcaacggtgaagtgaaacttcccgattgtgatcggtgtcatgaagcaaatcggcaaggcagggag-agagaaggtgacgg-----ggggcagC--CTCCTTAGA--GGGCGGCTCT--GGCTGGGCCCGAGTGAGCGTAGGAAGAGGCGATGAGAGGCAGA-AGGAGGAGATCGCAG--------------GGAACCGGTAAGC-GGAAGGGGGCCCCCAGCATCCTCAGTGAAC----------------ACCGGTGAGGCAGGG-----------CTGGGGGCTGTCAGGAGCCACGGGATTTGTCCTGGA-TGGAGTGGGTGGGACACAGGTG--------GGCCAGTTGAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119241761 390 + 128539186 accaCTGTGAGCC---AAGCCCTGCTCTAGGTTTTGGGgttccagcccttggggaggtgttgacatcctagtgagtgagggcacccagacagtgaatcagtcaactgtgaagtgaaacttcccgattgtgatcggtgtcatgaagcaaatcggcaaggcagggaa-agagaaggcgac-a--g-ggggGCAGC--CTCCTTAGA--GGGCGGCTCT--GGCTGGGCCCGAGTGAGTGTAGGGGGAGGCGATGAGAGGCAGA-AGGAGGAGATCGCAG--------------GGAGCCGGTAAGC-GGAAGGGGGCCCCCAGCATCCTCAGTGAAC----------------ACCGGCGAGGCAGGG-----------CTGGGGGCTATCAGGAGCCACGGGATTTGTGCTGGA-TGGAGTGGGTGGGACACAGGTG--------GGCCAGTTGAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 583853 388 + 6255621 accacTGTGAGCC---AAGCCCTGCTCTAGGTTTTGGGgttccagccctcggggaggtgttgacatcctagtgagtgagggcacccagacagtgaatcagtcaacggtgaagtgaaacttcccgattgtgatcggtgtcatgaagcaaatcggcaaggcagggag-agagaaggcgac-a-----ggggCAGC--CTCGTTAGA--GGGCGGCTCT--GGCTGGGCCAAAGTGAGCGTAGGAAGAGGTGATGAGAGGCAGA-AGGAGGAGATCGCAG--------------GGAGCCAGTAAGC-GGAAGGGGGCCCCCGGCATCCTTAGTGAAC----------------ACCGGCGAGGCAGGG-----------CTGGGGGCTATCAGGAGCCACGGGATTTGTCCTGGA-TGGAGAGGATGGGACACAGGTG--------GGCCAGTTGAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4619221 380 - 8658521 AGCACTGTGAGCC---AAGCCCTGCTCTAGGTTTTGGGgttccagccctcggggaggtgctgacatcctagtaagtgagggcacccagacagtgaatcagtcaacggtgaagtgaaacttcccgattgtgatcggtgtcatgaagcaaatcagcaaggcagggag-agagaaggcgac-a--g-aggggCAGC--CTCCTTAGA--GGGTGGCTCT--GGCTGGGCCAGAGTGAGCGTAGGAAGAGGCGATGA-----------GAGGAGATCGCAG--------------GGAGCCAGTAAGT-AGAAGGGGGTCCCCGGCATCCTCAGTGAAC----------------ACTGGTGAGGCAGGG-----------CTGGGGGCTGTCAGGAGCCACAGGATTTGTCCTGGA-TGGAGTGGGTGGGACACAGGTG--------GGCCAGTTGAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114819511 387 + 124281992 accaCCTTGGGTTTTGGGGTTCTGTCCC--GTTTTGGGGTTCTGTCCCTCAGGGAGGTGCTGACATCCCAGTGAGTGAGGGCACCCAGACAGGGAATCAGCCAACGGTGAGATGAAACTT-CTGATGGCGATCAGTGTCATGAAGCGAATCAGCAGGGCAGGGGG-AGAGAGGGCGAC-A--G--AGGACAGG---TCCATCGA--GGCTGGCTCT--GGCTGGGCCTGAGTGTGCGTA-GAAGAGGCGATGAGAGGCAGA-AAGAGGAGATCGCAG--------------GGAGCCGGTCAGCAGGAAGGGGGCCACTGGCGACCTCAGTGAAC----------------ACCGGCGAGGCAAGG-----------TT-GGGGCCATCAGGAGCCACTGGATTTGTCCTGGA-TGGAGTGGGTGGGCCACTGGTG--------GGCCAGTTGAGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 464156 387 - 9212255 accaCCTTGAGCC---AAGCCCTGCTCCAGGTTTTGGGGTTCTGTCCCTTGGGGAGGTACTGACATCCCAGTGAGTGAGGGCACCCAGACAGGGAATCAGCCAAAGGTGAGATGAAACCT-CTGATGGCGATCAGTGTCATGAAGCAAATCAGCAGGGCAGGGGGAAGAGAGGGCGAC-A--G--GGGGCAGG---TCCATCGA--GGCCGGCTCT--GGCTGGGTCTGAGTGTTCGTAGGAAGAGGCGATGAGAGGCAGA-GGGAGGAGACCACAG--------------GGAGCTGGTCAGCAGGAAGGGGGCCCCTGGCGACCTCAGTGAAC----------------ACCGGCGAGGCAGGG-----------CT-GGGGCCATCAAGAGCCACTGCATTTGTCCTGGA-TGGAGTGGGTGGG-CACTGGTG--------GGCCAGTTGAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2878535 387 + 4466143 accacCTTGAGCC---AAGCCCTGCTACAGGTTTTGGGGTACTGTCCATTGGGGATGTGCTGACATCCCAGTGAGTGAGGGCACCCGGGCAGGGAATCAGCCAATCGTGAGATGAAACCT-CTGATGGCGATCAGCGTCATGAAGCGAATCAGCAGGGCAGGGGG-AGAGAGGGCGAC-A--G--AGGGCAGG---TCCATCGA--GGCCGGCTCT--GGCTGGGCCTGAGGGTGTGTAGGAAGAGGCGATGAGAGGCAGT-GGGGGGAGATGGCAG--------------GGAGCTGGTCAGCAGGAAGGGGGCCCCTGGCGACCTCAGTGAAC----------------ACGGGCGAGGCAAGG-----------TT-GGGGCCATCAGGAGCCACTGCATTTGTCCTGGA-TGGAGTGGGTGGGCCACTGGTG--------GGCCAGTTGAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1585686 386 + 5364348 accacCTTGAGCC---AAGCCCTGCTCCAGGTTTTGGGGTTCTGTCCCTTGGGGAGGTGCTGACATCCCAGTGAGTGAGGGCACCCAGACAGGGAATCAGCCAACGGTGAGATGAAACTT-CTGCTGGCAATCAGCGTCATGAAGAGAATCAGCAGGGCAGAGGG-AGAGAGGGCGTC-A--G--AGGGCAGG---TCCATCGA--CGCCGGCTCT--GGCTGGGCCTGAGTGTGCATaggaagaggcgatgagaggcaga-gggaggagaTCGCAG--------------GGAGCCGGTCAGCAGGAAGGGGGCCCCTGGTGACCTCAGTGAAC----------------ACCAGTGAGGCA-GG-----------TT-GGGGCCATCAGGAGCCACTGGATTTGTCCTGGA-TGCAGTGGGTGGGCCACTGGTG--------GGCCAGTTGAGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4309251 327 + 7922563 CCTAATGTGAGCC----AGCCCTACTCTAGGTCT--GGGTTCTAGCCTTC-GGGAggtgcttacatccc----agtgaggacagccagacaataaacaggccaataat-------------cagagtgtgattagagccatgaagcaaataaccagaacaatgag-atggagcgtaac-a--g-aggggtagg--CTC---------------TTA--AACTGGGCCCGAGTGGAC----------------------------CAGGGGATCTTGA--------------TGAGCCAGGAAGCAGGAAGGGCAGCCATTGTGTCCTCAGCTGAC----------------ACTGGTGAGGGAGGG-----------TT-GGGACTGTCA-GAGCCATGTGGCCTGCCATGCAGTAGAGTGAGGGGATTACAG--G--------GGTCAGTTGAGG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124813153 401 + 151834684 CCCCTTGTGACCC---CTGTC---------ACCTCTGAGCTCTAGCTAT----GGGATGCCCATGACTTAG-------AGGTAGCCAGCCAGGGTGCCAGGCAGTGACAAAGTGAAGT---CAGGTTGTGACCCATGTCAC-CAGCAG------AGGGAATGGCG-AGGAGAAGTCAC-ATGG-AGGGGCCAGTACTCCCTAGATGGGGCATCTCTAGGGCTAGACCTGACTGAGCATAAAAAGGAGGAGTG---GATAGAGAAGTGGGGGTGGGGG--------------GGAAAGGGgtggg-ggaaggagcttgctgccaatccttacgacctgagtctgatcctgggacccacaaggtaggagagtccagattcTGTGGCATGTGAATACCAATAAACCAAATATTAGA-AGAAGTTTTTAAAAGATAGATGAATCGGGCAGACAGTGGGAG i mm10.chr5 C 0 I 5 s canFam3.chr26 33161706 370 - 38964690 cctactgtgaact---gagccctattctaagcattggggttccagcccttggggagatgtctgcattctagtgagtgg----aatcagacaatcagtgagccagtaattaggtgaaatgc-cagatttctatcagtgtcatgaaggaa------agagcagtgag-atcgagagcgat-a--gaagggacagg-ccaccttaggaggggtggCTTTTGTGTGGGGCCTGAATAAACCTAGGAAATGGTGATGAGAAGCAGA------GAGAACTCTGTCTGTTTCTCCATCTGCTCCAGAAA---GGCAGGGCAGCCCTGGTGTCCTCAGCTCAC----------------ACTGGCCA-GCAGGG-----------TTGGGGGCTGGCCTGTG----------------GAA-TGGAGTGG-TGGGACATGGGGG-------TGGCCAGT----- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e proCoq1.NW_012154285v1 6723546 325 - 9870158 I e dasNov3.JH568189 845084 0 - 1116856 C a score=325989.000000 s hg38.chr12_KI270834v1_alt 76211 25 + 119498 AAGGTC-------------AGAGTCAGGGTGGCTGCCT- s panTro5.chr12 127362213 25 + 137163284 AAAGTC-------------AGAGTCAGGGTGGCTGCCT- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125713256 25 + 135337776 AAAGTC-------------AGAGTCAGGGTGGCTGCCT- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8226619 25 - 8369578 AAGGTC-------------AGAGTCAGGGTGGCTGCCT- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97884863 25 + 106955855 AAGGTC-------------AGAGTCAGGGTGGCTGCCT- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124000032 25 + 133663169 AAGGTC-------------GGAGTCAGGGTGGCTGCCT- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128248133 25 + 137757926 AAGGTC-------------GGAGTCAGGGTGGCTGCCT- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10646718 25 - 16319837 AAGGTC-------------GGAGTCAGGGTGGCTGGCT- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12270384 25 + 20526591 AAGGTC-------------GGAGTCAGAGTGGCTGCCT- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119242151 25 + 128539186 AAGGTG-------------GGAGTCAGGGCGGCTGCCT- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 584241 25 + 6255621 AAGGTC-------------GGAGTCAGGGTGGCTGCCT- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4619601 25 - 8658521 AAGGTC-------------GGAGTCAGAGTGGCTGTCT- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114819898 25 + 124281992 AAGGTT-------------GGAGTCAGGGCGGCTGCCT- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 464543 25 - 9212255 AAGGTC-------------AGAGTCAGGGTGGCTGCCT- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2878922 25 + 4466143 AAGGTC-------------AGAGTCAGGGTGGCTGCCC- i cebCap1.NW_016107484v1 C 0 I 37 s aotNan1.NW_018491581v1 1586072 25 + 5364348 AAGGTC-------------GGAGTCAGGGTGGCTGCCT- i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6723871 25 - 9870158 AAGGTC-------------AGAGTCAGAGTGGCTGCCT- i proCoq1.NW_012154285v1 I 325 I 178 s otoGar3.GL873618 4309578 25 + 7922563 AAGGTC-------------AGAGTCAGAGTGGCTGCAT- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124813559 38 + 151834684 CAGATCATTTCAGTCATCTGAAGTCAGAAGGCCATCCT- i mm10.chr5 I 5 I 7 s canFam3.chr26 33162076 21 - 38964690 -----C-------------AGAGTCAGATCAGTGGTCCT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e dasNov3.JH568189 845084 0 - 1116856 C a score=1045141.000000 s hg38.chr12_KI270834v1_alt 76236 94 + 119498 AGTGCTGGAGGCCCCACGCATGGT-GAGGT-----------------------TTTCTGT---------CCCACCAGGATCA---CTGAGGCTGCCACATTGGCCAGAGCCCCTTAGATCCCCG-CTAGGG s panTro5.chr12 127362238 94 + 137163284 AGTGCTGGAGGCCCCACGCATGGT-GAGTT-----------------------TTTCTGT---------CCCACCAGGATCA---CTGAGGCTGCCACATTGGCCAAAGCCCCTTAGATCCCCG-CTAGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125713281 94 + 135337776 AGTGCTGGAGGCCCCACGCATGGT-GAGTT-----------------------TTTCTGT---------CCCACCAGGATCA---CTGAGGCTGCCACATTGGCCAAAGCCCCTTAGATCCCCG-CTAGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8226644 94 - 8369578 AGTGCTGGAGGCCCCACGCATGGT-GAGGT-----------------------TTTCTGT---------CCCACCAGGATCA---CTGAGGCTGCCACATTGGCCAAAGCCCCTTAGATCCCCG-CTAGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97884888 94 + 106955855 AGTGCTGGAGGCCCCACGCATGGT-GAGGT-----------------------TTTCTGT---------CCCACCAGGATCA---CTGAGGCTGCCACACTGGCCAAAGCCCCTTAGATCCCCG-CTAGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124000057 94 + 133663169 GGTGCTGGAGGCCCCATGCATGGT-GGGGT-----------------------TTTCTGT---------CCCACCGGGATCA---CTAAGGCTGCCACATTGGCCAAAGCTCCTTAGATCCCCA-CTGGGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128248158 94 + 137757926 GGTGCTGGAGGCCCCATGCATGGT-GGGGT-----------------------TTTCTGT---------CCCACCGGGATCA---CTAAGGCTGCCACATTGGCCAAAGCTCCTTAGATCCCCA-CTGGGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10646743 95 - 16319837 GGTGCTGGAGGCCCCATGCATGGTGGGGGT-----------------------TTTCTGT---------CCCACCGGGATCA---CTAAGGCTGCCACATTGGCCAAAGCTCCTTAGATCCCCA-CTGGGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12270409 94 + 20526591 GGTGCTGGAGGCTCCATGCACGGT-GGGGT-----------------------TTTCTGT---------CCCACCAGGATCA---CCAAGGCTGCCACATTGTCCAAAGCTCCTTAGATCCCCA-GTGAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119242176 94 + 128539186 GGTGCTGGAGGCCCCACGCATGGG-GGGGT-----------------------TTTCTGT---------CCCACCAGGATCA---CTAAGGCTGCCACATTGGCCAAAGCTCCTTAGATCCCTG-CTAGGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 584266 94 + 6255621 GGTGCTGGAGGCCCCATGCATGGT-GGGGT-----------------------TTTCTGT---------CCCACCGGGATCA---CTAAGGCTGCCACATTGGCCAAAGCTCCTTAGATCCCCA-CTGGGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4619626 94 - 8658521 GGTGCTGGAGGCCCCACGCATGGT-GGGGT-----------------------TTTCTGT---------CCCACCAAGATCA---CTAAGGCTGCCACATTGGCCAGAGCTCCTTAGATCCCCA-CTGGGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114819923 93 + 124281992 -GTGCTGGAGGCCCCATGCATGGT-GAGGT-----------------------TTTCTGT---------CCCACCAGGATCA---CTAAGGCTGCCACATTGGCCAGAGCCCCTTAGATCCCCG-CTAGGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 464568 94 - 9212255 GGTGCTGGAGGCCCCATGCATGGT-GAAGT-----------------------TTTCTGT---------TCCACCAGGATCA---CTAAGGTTGCCACATTGGCCAGAGCCCCTTAGATCCCCG-CTAGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2878984 94 + 4466143 GGTGCCGGAGGCCCCATGCGTGGT-GAGGT-----------------------TTGCTGT---------CCCACTAGGATCA---CTAAGGCTGCCACATGGGCCAGAGCCCCTTAGAGCTCCC-CTAGGG i cebCap1.NW_016107484v1 I 37 C 0 s aotNan1.NW_018491581v1 1586097 94 + 5364348 GGTTCTGGAGGCCCCATGCATGGT-GAGGT-----------------------TTTCTGT---------CCCACCAGGATCA---CTAAGGCTGCCACATTGGCCAGAGCCCCTTAGATCCCCC-CTAGGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4309603 96 + 7922563 GGAGTCAGAGGCCCCAGACCCAGT-GAGGA-----------------------TTTCTGT---------CCCATCAGGAAAG--CCTGGGGATGCCATGTTGACCAGAGGTCTCCAGACCCCCGCCCAGGG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124813604 128 + 151834684 TGGCCAGGAGTGTCCAGGCA-GGT-GGGGCAGACATGGGATCAAGTGGGTAGGACACTGTGAGACAATGCCATATAGGATCCTCTCTATGGCCACTGAATCGACCAGAGCCCTCTTACAAGCCA-CCAGTC i mm10.chr5 I 7 C 0 s canFam3.chr26 33162097 95 - 38964690 GGTGTTGGAGACCCCATGCCCCGT-GAGGA-----------------------CTTCTAT---------TCTAGTAGTAACA--CCCTAGGCCATCGTATTGGCCAAAGTGAGTTAGATCCCCT-GACAGC i canFam3.chr26 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e proCoq1.NW_012154285v1 6723896 178 - 9870158 I e dasNov3.JH568189 845084 0 - 1116856 C a score=844642.000000 s hg38.chr12_KI270834v1_alt 76330 92 + 119498 C----TCAAGCCAACCTTTGAGGACTGCACTCTGCTCAGAGCCGG-GGCCG--------CGAGTGCATCTCCTCTGAGCCCA--AGC-TTTACTCACCCCCTGTCCTA- s panTro5.chr12 127362332 92 + 137163284 C----TCAAGCCAACCTTTGAGGACTGCACTCTGCTCAGAGCTGG-GGCTG--------CGAGTACATCTCCTCTGAGCCCA--AGC-TTTACTCACCCCCTGTCCTA- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125713375 92 + 135337776 C----TCAAGCCAACCTTTGAGGACTGCACTCTGCTCAGAGCTGG-GGCTG--------CGAGTGCATCTCCTCTGAGCCCA--AGC-TTTACTCACCCCCTGTCCTA- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8226738 92 - 8369578 C----TCAAGCCAACCTTTGAGGACTGCACTCTGCTCAGAGCCGG-GGCCG--------CGAGTGCATCTCCTCTGAGCCCA--AGC-TTTACTCACCCCCTGTCCTA- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97884982 93 + 106955855 C----TCAAGCCAACCTTTGAGGACTGCCGTCTGCTCAGAGCCGGTGGCTG--------CGAGTGCATCTCCTCTAAGCCCA--AGC-TTTATTCACCCCCTGCCCCA- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124000151 91 + 133663169 C----TCAAGCCAACCTTTAAGGACTGCACTCTGCTCAGAGCCGGTGGCCG--------CGAGTGCATCTCCTCTGAGCCCA--AG--TGTACTCACCCCC-GCCCCA- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128248252 91 + 137757926 C----TCAAGCCAACCTTTAAGGACTGCACTCTGCTCAGAGCCGGTGGCCG--------CGAGTGCATCTCCTCTGAGCCCA--AG--TGTACTCACCCCC-GCCCCA- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10646838 91 - 16319837 C----TCAAGCCAACCTTTAAGGACTGCACTCTGCTCAGAGCCGATGGCCG--------CGAGTGCATCTCCTCTGAGCCCA--AG--TGTACTCACCCCC-GCCCCA- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12270503 91 + 20526591 C----TCAAGCCAACCTTTAAGGACTGCACTCTGCTCAGAGCCGGTGGCCG--------CGAGTGCATCTCCTCTGAGCCCA--AG--TGTACTCACCCCT-GCCCCA- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119242270 91 + 128539186 C----TCAAGCCAACCTTTAAGGCCTGCACTCTGCTCAGAGCCGGTGGCCG--------AGAGTGCATCTCCTCTGAGCCCA--AG--TTTACTCACCCCC-GCCCCA- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 584360 91 + 6255621 C----TCAAGCCAACCTTTAAGGACTGCACTCTGCTCAGAGCCGGTGGCCG--------CGAGTGCATCTCCTCTGAGCCCA--AG--TATACTCACCCCC-GCCCCA- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4619720 92 - 8658521 C----TCAAGCCAACCTTTAAGGACTGCAGTCCGCTCAGAGCCGGTGGCCG--------TGAGTGCATCTCCTCTGAGCCCA--AG--TTTACTCACCCCCTGCCCCA- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114820016 92 + 124281992 T----TCAAACCAACCTTTGAGGACTGCACTCTGCTCAGAGCTGGTGGCTG--------CCAGTGCCTCTTCTCTGAGCCCA--AGT-TTTACCCATCCCC-TGCCCG- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 464662 100 - 9212255 T----TCAAACTAACCTGTGAGGACTGCACTCTGCCCAGAGCCGGTGGCCGCCCAACTACCAGTGCCTCTTCTCTGAGCCCA--AGT-TTTACCCACCCCC-TGCCCG- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2879078 92 + 4466143 C----TCAAACCAACCTTTGAGGACTGCACCCTGCCCAGAGCCGGTGGCCG--------CCAGTGCCTCTCCTCTGAGCCCA--AGT-TTTACCCACCCCC-TGCCCG- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1586191 92 + 5364348 T----TCAAACCAACCTTTGAAGACTGCACTCTGCCCAGAGCCGGTGGCCA--------CCAGTGCCTCTACTCTGAGCCCA--AGT-TTTACCCACCCCC-TGCCCA- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4309699 92 + 7922563 C----ACAGACTGACC--TGAGGATCATACTCTGCCTTGATCCAGGACCTG--------TAAGTGCATCCTCCCTGCACCCCATAGC-TTTACTGACCTCC-CTCTCC- i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124813732 81 + 151834684 CATAGCCATACCTGGCTTTGAGGTTCCCACAAGACCTA--------GGCTG--------CA--------TTCGCTACATCCC--AGCATCTCACCAGCCCC-TCCCCT- i mm10.chr5 C 0 C 0 s canFam3.chr26 33162192 93 - 38964690 C----CACCACTGACCTGGGAGAGCTATGTGCCACTTTGTCCCAATGGTTG--------TG-GTCTCTCCCCTCCCTGCCCAGTAGC-TGCCCTAACCTGC-CCCTCC- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 845084 95 - 1116856 c----ccaAACCAACCTTTGGGGACCACGTGCCTCTTTGGCTCGATAATGG--------TAAGTGGGTTTTCCACGTTCCTAGCAGC-TTTACTAACCTTC-CCCCTCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9469864 2197 - 31815103 I e proCoq1.NW_012154285v1 6723896 178 - 9870158 I a score=3585579.000000 s hg38.chr12_KI270834v1_alt 76422 185 + 119498 CCCTGCAGCCGAGGAGAAGAAGAAACTGGCAGAGGAAAAGGCCATGGAGATAGAGGAGCAGAACAAAGTCATTGCCATGGAGAAGGCCGAGGCCGAGACGACCCTGGCAGAGGTCATGCCCATCCTGGAGGCCGCCAAGCTGGAACTGCAGAAGCTGGACAAGTCGGACGTGACTGAGATTAGGT s panTro5.chr12 127362424 185 + 137163284 CCCTGCAGCCGAGGAGAAGAAGAAACTGGCGGAGGAAAAGGCCATGGAGATAGAGGAGCAGAACAAGGTCATTGCCATGGAGAAGGACGAGGCCGAGACGACCCTGGCGGAGGTCATGCCCATCCTGGAGGCCGCGAAGCTGGAGCTGCAGAAGCTGGACAAGTCGGACGTGACTGAGATTAGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125713467 185 + 135337776 CCCTGCAGCCGAGGAGAAGAAGAAACTGGCGGAGGAAAAGGCCATGGAGATAGAGGAGCAGAACAAGGTCATTGCCATGGAGAAGGACGAGGCCGAGACGACCCTGGCGGAGGTCATGCCCATCCTGGAGGCCGCCAAGCTGGAGCTGCAGAAGCTGGACAAGTCGGACGTGACTGAGATTAGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8226830 185 - 8369578 CCCTGCAGCCGAGGAGAAGAAGAAACTGGTGGAGGAAAAGGCCATGGAGATAGAGGAGCAGAACAAGGTCATTGCCATGGAGAAGGCCGAGGCCGAGACGACCCTGGCGGAGGTCATGCCCATCCTGGAGGCTGCCAAGCTGGAACTGCAGAAGCTGGACAAGTCGGACGTGACTGAGATTAGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97885075 185 + 106955855 CCCTGCAGCCGAGGAGAAGAAGAAACTGGCGGAGGAAAAGGCCATGGAGATAGAGGAGCAGAACAAGGTCATTGCCATGGAGAAGGCCGAGGCCGAGACGACCCTGGAGGAGGTCATGCCCATCCTGGAGGCTGCCAAGCTGGAGCTGCAGAAGCTGGACAAGTCGGACGTGACTGAGATTAGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124000242 185 + 133663169 CCCTGCAGCTGAGGAGAAGAAGAAACTGGCGGAGGAAAAGGCCATAGAGATAGAGGAGCAGAACAAGGTCATTGCCATGGAGAAGGCTGAGGCCGAGACGACCCTGGAGGAGGTCATGCCCATCCTGGAGGCCGCGAAGCTGGAGCTGCAGAAGCTGGACAAGTCAGATGTGACTGAGATTAGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128248343 185 + 137757926 CCCTGCAGCTGAGGAGAAGAAGAAACTGGCGGAGGAAAAGGCCATAGAGATAGAGGAGCAGAACAAGGTCATTGCCATGGAGAAGGCTGAGGCCGAGACGACCCTGGAGGAGGTCATGCCCATCCTGGAGGCCGCGAAGCTGGAGCTGCAGAAGCTGGACAAGTCAGATGTGACTGAGATTAGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10646929 185 - 16319837 CCCTGCAGCTGAGGAGAAGAAGAAACTGGCGGAGGAAAAGGCCATAGAGATAGAGGAGCAGAACAAGGTCATTGCCATGGAGAAGGCTGAGGCCGAGACGACCCTGGAGGAGGTCATGCCCATCCTGGAGGCCGCGAAGCTGGAGCTGCAGAAGCTGGACAAGTCGGATGTGACTGAGATTAGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12270594 185 + 20526591 CCCTGCAGCTGAGGAGAAGAAGAAACTGGCGGAGGAAAAGGCCATAGAGATAGAGGAGCAGAACAAGGTCATTGCCATGGAGAAGGCTGAGGCCGAGACGACCCTGGAGGAGGTCATGCCCATCCTGGAGGCCGCGAAGCTGGAGCTGCAGAAGCTGGACAAGTCGGACGTGACTGAGATTAGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119242361 185 + 128539186 CCCTGCAGCTGAGGAGAAGAAGAAACTGGCGGAGGAAAAGGCCATAGAGATAGAGGAGCAGAACAAGGTCATTGCCATGGAGAAGGCTGAGGCCGAGACGACCCTGGAGGAGGTCATGCCCATCCTGGAGGCCGCGAAGCTGGAGCTGCAGAAGCTGGACAAGTCGGACGTGACTGAGATTAGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 584451 185 + 6255621 CCCTGCAGCTGAGGAGAAGAAGAAACTGGCGGAGGAAAAGGCCATAGAGATAGAGGAGCAGAACAAGGTCATTGCCATGGAGAAGGCTGAGGCCGAGACGACCCTGGAGGAGGTCATGCCCATCCTGGAGGCCGCGAAGCTGGAGCTGCAGAAGCTGGACAAGTCGGACGTGACTGAGATTAGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4619812 185 - 8658521 CCCTGCAGCTGAGGAGAAGAAGAAACTGGCGGAGGAAAAGGCCATAGAGATAGAGGAGCAGAACAAGGTCATTGCCATGGAGAAGGCTGAGGCCGAGACGACCCTGGAGGAGGTCATGCCCATCCTGGAGGCCGCGAAGCTGGAGCTGCAGAAGCTGGACAAGTCGGACGTGACTGAGATTAGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114820108 185 + 124281992 CCCTGCAGCTGAGGAGAAGAAGAAGCTGGCGGAGGAAAAGGCCATGGAGATAGAGGAGCAGAACAAGGTCATTGCCATGGAGAAGGCTGAGGCCGAGACGACCCTGGAGGAGGTCATGCCCATCTTGGAGGCCGCCAAGCTGGAGCTGCAGAAGCTGGACAAGTCAGATGTGACCGAGATCAGGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 464762 185 - 9212255 CCCTGCAGCTGAGGAGAAGAAGAAGCTGGCAGAAGAAAAGGCCATGGAGATAGAGGAGCAGAACAAGGTCATTGCCGTGGAGAAGGCCGAGGCCGAGACGACCCTGGAGGAGGTCATGCCCATCTTGGAGGCCGCCAAGCTGGAGCTGCAGAAGCTGGACAAGTCAGACGTGACCGAGATCAGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2879170 185 + 4466143 CCCTGCAGCTGAGGAGAAGAAGAAGCTGGCGGAGGAAAAGGCCATGGAGATAGAGGAGCAGAACAAGGTCATTGCCGTGGAGAAGGCCGAGGCCGAGACGACCCTGGAGGAGGTCATGCCCATCTTGGAGGCCGCCAAGTTGGAGCTGCAGAAGCTGGACAAGTCAGACGTGACTGAGATCAGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1586283 185 + 5364348 CCCTGCAGCTGAGGAGAAGAGGAAGCTGGCGGAGGAAAAGGCCATGGAGATAGAGGAGCAGAACAAGGTCATCGCCCTGGAGAAGGCCGAGGCCGAGACGGCCCTGGAGGAGGTCATGCCCGTCTTGGAGGCCGCCAAGCTGGAGCTGCAGAAGCTGGACAAGTCAGACGTGACCGAGATCAGGT i aotNan1.NW_018491581v1 C 0 I 2 s micMur3.chr21 9472061 185 - 31815103 CCCCGCAGCGGAGGAGAAGAAGAAGCTCGCGGAAGAGAAGGCCATGGAGATAGAGGAGCAGAACAAGATCATTGCGGTGGAGAAGGCCGAGGCCGAGGCGGCCCTCGCCGAGGTCATGCCCATCCTGGAGGCCGCCAAGCTGGAGCTGCAGAAGCTGGACAAGTCGGACGTGACGGAGATCAGGT i micMur3.chr21 I 2197 I 2380 s proCoq1.NW_012154285v1 6724074 185 - 9870158 CCCTGCAGCGGAGGAAAAGAAGAAGCTCGCAGAAGAGAAGGCCATGGAGATAGAGGAGCAGAACAAGATCATCGCGGTGGAGAAGGCCGAGGCCGAGACGGCCCTTGCCGAGGTCATGCCCATCCTGGAGGCCGCTAAGCTGGAGCTGCAGAAGCTGGACAAGTCGGACGTGACGGAGATCAGGT i proCoq1.NW_012154285v1 I 178 I 961 s otoGar3.GL873618 4309792 184 + 7922563 -CTTGCAGCGGAGGAAAAGAAGAAGCTCGCAGAAGAGAAGGCCATAGAGATAGAGGAGCAGAACAAGATCATTGCAGTGGAGAAGGCAGAGGCTGAAACAGCCCTTGCTGAGGTCATGCCCATCCTAGAGGCTGCCAAGCTGGAGCTGCAGAAGCTGGACAAGTCGGATGTGACTGAGATCAGGT i otoGar3.GL873618 I 1 C 0 s mm10.chr5 124813813 185 + 151834684 CCTTGCAGCGGAGGAGAAGAAGAAGCTGGCAGAGGAGAAGGCCATAGAGATCGAAGAGCAGAACAAGATCATCGCTGTCGAGAAGGCCGAGGCTGAGACAGCTCTGGCTGAGGTCATGCCCATCCTGGAGGCTGCCAAACTAGAGCTGCAGAAGCTGGACAAGTCCGACGTGACTGAAATCAGGT i mm10.chr5 C 0 I 360 s canFam3.chr26 33162285 185 - 38964690 CCCCACAGCTGAGGAAAAGAAGAAGCTCGCAGAAGAAAAAGCCATCGAGATAGAAGAACAAAACAAGATCATTGCTGTGGAGAAGGCTGAGGCTGAGATGGCCCTGGCCGAGGTCATGCCCATCCTAGAGGCCGCCAAGCTGGAGCTGCAGAAGCTGGACAGATCAGACGTGACCGAGATTAGGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 845179 185 - 1116856 ACCGGTAGCGGAGGAAAAGAAGAAACTCGCTGAAGAAAAAGCCATGGAGATCGAGGAGCAGAACAAGATCATTGCCGTGGAGAAGGCGGAGGCAGAGGCGGCCCTCGCTGAAGTCATGCCCATCCTGGAGGCCGCCAAGCTCGAGCTGCAGAAACTGGACAAGTCAGACGTGACAGAGATTAGGT i dasNov3.JH568189 C 0 C 0 a score=522039.000000 s hg38.chr12_KI270834v1_alt 76607 63 + 119498 AATGCACCTG--AGCCACCATTCTGGG--C-TTCCATTCCACCTCTGCAA-----GCCAGTAGTCTCCATGAT s panTro5.chr12 127362609 63 + 137163284 AATGCACCTG--AGCCACCATTCTGGG--C-TTCCATTCCACCTCTGCAG-----GCCAGTAGTCTCCATGAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125713652 63 + 135337776 AATGCACCTG--AGCCACCATTCTGGG--C-TTCCATTCCACCTCTGCAG-----GCCAGTAGTCTCCATGAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8227015 63 - 8369578 AATGCACCTG--AGCCACCATTCTGGG--C-TTCCATTCCACCTCTGCAG-----GCCAGTAGTCTCCATGAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97885260 63 + 106955855 AATGCGCCCG--GGCCACCATTCTGGG--C-TTCCATTCCACCTCTGCAG-----GCCAGTAGTCTCCATGAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124000427 63 + 133663169 AATGCGCCTG--GGCCGCCGTTCTGGG--C-TTCCGTTCCACCTCTGCAG-----GCCAGTAGTCGCCATGAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128248528 63 + 137757926 AATGCGCCTG--GGCCGCCGTTCTGGG--C-TTCCGTTCCACCTCTGCAG-----GCCAGTAGTCGCCATGAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10647114 63 - 16319837 AATGCGCCTG--GGCCGCCGTTCTGGG--C-TTCCGTTCCACCTCTGCAG-----GCCAGTAGTCGCCATGAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12270779 63 + 20526591 AACGCGCCCG--GGCCGCCGTTCTGGG--C-TTCCGTTCCACCTCTGCAG-----GCCAGTAGTCGCCATGAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119242546 63 + 128539186 AACGCGCCCG--GGCTGCCGTTCTGGG--C-TTCCATTCCACCTCTGCAG-----GCCAGTAGTCGCCATGAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 584636 63 + 6255621 AACGCGCCCG--GGCCGCCGTTCTGGG--C-TTCCATTCCACCTCTGCAG-----GCCAGTAGTCGCCATGAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4619997 63 - 8658521 AACGCGCCCG--GGCCGCCATTCTGGG--C-TTCCGTTCTACCTCTGCAG-----GCCAGCAGTCCCCGTGAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114820293 62 + 124281992 AGCATGCC-G--GGCCACCATCCTGGG--C-TTCCCTTCCACCTTTGCAG-----GCCAGCAGTTCCCATCAT i calJac3.chr9 C 0 I 146 s saiBol1.JH378194 464947 62 - 9212255 AACGCGCC-G--GGCCTCCATCCTGGG--C-TTCCCTTCCACCTTTGCAG-----GCCAGCAGTTCCCATCAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2879355 62 + 4466143 AACACGCC-G--GGCCTCCATCCTGGG--C-TTCCCCTCCACCTTTGCAG-----GCCAGCAGTTCCCATCAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1586470 62 + 5364348 ACAACGCC-G--GGCCGCCATCCTGGG--C-TTCCCTTCCACCTTTGCAG-----GCCAGCAGTTCCCGTCAT i aotNan1.NW_018491581v1 I 2 C 0 s otoGar3.GL873618 4309976 43 + 7922563 -AGGTGAT----GGTAGTCTCCCAGGTACC-TTGGCCACCACCTTTGTA------------------------ i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33162470 64 - 38964690 -----AACTGATGGCAGTC--TCTGAG--TGTGCTCGGCCACCTGTGTCGCTCCTGACAGCAGCTACTGTCAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 845364 65 - 1116856 AACCAACTGT--CATCTCCAGTGACGG--C-TCCCGTGCCCCCCTTGCTC---CTGGAGATAATTACCACAAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6724259 961 - 9870158 I a score=22819.000000 s hg38.chr12_KI270834v1_alt 76670 3 + 119498 CGT s panTro5.chr12 127362672 3 + 137163284 CGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125713715 3 + 135337776 CGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8227078 3 - 8369578 CGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97885323 3 + 106955855 CGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124000490 3 + 133663169 CGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128248591 3 + 137757926 CGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10647177 3 - 16319837 CGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12270842 3 + 20526591 CGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119242609 3 + 128539186 CGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 584699 3 + 6255621 CGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4620060 3 - 8658521 CGT i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 465009 3 - 9212255 GGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2879417 3 + 4466143 GGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1586532 3 + 5364348 GGT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4310019 1 + 7922563 --T i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33162534 3 - 38964690 CAC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 845429 3 - 1116856 CAC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6724259 961 - 9870158 I e calJac3.chr9 114820355 146 + 124281992 I a score=9533366.000000 s hg38.chr12_KI270834v1_alt 76673 978 + 119498 GGCAACCAGGAGCTTACAAAGGAGCCGATGCCACATGCTG-CCACTGTGC--CTGGCTCTCTCCATGGTGGAGAC---------tgttgtt-----------gccctcatttt--cggatggggaaaatgaggcccagggagatgaggtgggc--gccccaggcatccagatcccccagctagtaggaagcagggcc----------------------tgctgaccttgaacccaggcc----------AA----GGGAAGGA----T-----------GGAGTGGG--------GT-----------------------AAAACAGTGCTCTTCACGGAACATGCGGGGGCAAGTGTCCGCCCTAAGCAGGGGCAGGATGCTCACCATGGGG----CTGAG-CCCTGCTGAAAACAGCTCTGCAGAGATGTG-TGCACACCACGGCCGGACTGGCGATGCCTGAATCCATTTCCAGCCAAGGAAGCTTTCAAGGAG-----GGTGAGAGTAGGTCACTATTGAGGCCCCCATACATCTTGCAAATCAATCTGTAAGATGACCCTGTCCCCCAC-A-CCAGAGGGCTCATCTGCTGTCAGCGAGGGTAACGTGGTGTGGCGTGGGCTAACAAGCTTTCTCCTCGCATGGCTTGGCCT--CCCCAGGGCACTGTTCCTGGGCTCTGATGGTCAGTTGAGTCTTGTGAGTAAAGCCCTGGGAGGGAACACTGTCCTG-GTGCCAGCCTCCGCCCACTGCCTCTGCCCCTGTGCTGCCTG----GCCCCGCACAGA--CCCCTC-GGCGTGGGAGCCTCAGCTCTCT-CCTTCC-CCACTCTTCA-------------TC-------------CAGAAGGAGATCAGTCTTCCTGGCCCCACACACGGGTCTCGCAGC--CGAGAGGCT---CCGTTCCTGGGTCAGTA------ATGGGC-TTCCATTCTGGGCTCCCGCTGGAGCGGTGCATGTTCCCTGTGCT--TCCTATTTCTCTGCCTCTGTGCTGCCTGTGAAGGCTGAGCAGCGCTCCTTGTCCAAGTCCGTGCCC---TTGTTTTCTTATTGGTGAAACATTTGTGAATTTGAGCATGGAATTCAGCTCACTCCAGGACAGAATGACCTCCCGGTTCA s panTro5.chr12 127362675 974 + 137163284 GGCAACCAGGAGCTTACAAAGGAGCTGATGCCACATGCTG-CCACTGTGC--CTGGCTCTCTCCACGGTgcagac---------tgttgtt-----------gccctcatttt--cggatggggaaagtgaggcccagggagatgaggtgggc--gccccaggcatccagatcccccagctagtaggaagcagggcc----------------------tgctgaccttgaacccaggcc----------AA----GGGAAGGA----T-----------GGAGTGGG--------GT-----------------------AAAAGAGTGCTCTTCACGGAACATGCGGGGGCAAGTGTCTGCCCTAAGCAGGGGCAGGATGCTCACCACGGGG----CTGAG-CCCTGCTGAAAACAGCTCAGCAGAGATGTG-TGCACACCACGGCCGGACTGGCGATGCCTGAATCCATTTCCAGCCAAGGAGGCTTTCAAGGAG-----GGTGAGAGTAGGTCACTATTGAGGCCCCCATACATCTTGCAAATCAATCTGTAAGATGACCCTGTCCCCCAC-A-CCAGAGGGCTCATATGCCGTCAGCGAGGGTAACGTGGTGTGGCGTGGGCTAGCAAGCTTTCTCCTCGCATGGCTTGGCCT--CCCCAGGGCACTGTTCCTGGGCTCTGATGGTCAGTTGAGTCTTGTGAGTAAAGCCCTGGGAGGGAACACTGTCCTG-GTGCCAGCCTCCGCCCACTGCCTCTGCCCCTGTGCTGCCTG----GCCCCGCACAGA--CCCCTC-GGCGTGGGAGCCTCAGCTCTCT-CCTTCC-TCACTCTTCA-------------TC-------------CAGAAGGAGATCAGTCTTCCTGGCCCCACACACGGGTCTCGCAGC--CGAGAGGCT---CCGTTCCTGGGTCAGTA------GTGGGC-TTCCATTCTGGCCTCCTGCTGCAGTGGTGCATGTTCCCTGCGCT--TCCTGTTTCTCTGCCTCTGTGCTATCTGTGAAGGCTGAGCAGCACTCCTTGTCCAAGTCCGTGCCC---TTGTTTTCTTATTGGTGAAACATTTGTGAATCTGAGCATGGAATTCAGCTCATTCCAGGACAGGG-GACCT---GGTTCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125713718 974 + 135337776 GGCAACCAGGAGCTTACAAAGGAGCTGATGCCACATGCTG-CCACTGTGC--CTGGCTCTCTCCACGGTgcagac---------tgttgtt-----------gccctcatttt--cggatggggaaagtgaggcccagggagatgaggtgggc--gccccaggcatccagatcccccagctagtaggaagcagggcc----------------------tgctgaccttgaacccaggcc----------AA----GGGAAGGA----T-----------GGAGTGGG--------GT-----------------------AAAAGAGTGCTCTTCACGGAACATGCGGGGGCAAGTGTCTGCCCTAAGCAGGGGCAGGATGCTCACCACCGGG----CTGAG-CCCTGCTGAAAACAGCTCAGCAGAGATGTG-TGCACACCACGGCCGGACTGGCGATGCCTGAATCCATTTCCAGCCAAGGAGGCTTTCAAGGAG-----GGTGAGAGTAGGTCACTATTGAGGCCCCCATACATCTTGCAAATCAATCTGTAAGATGACCCTGTCCCCCAC-G-CCAGAGGGCTCATATGCCGTCAGCGAGGGTAACGTGGTGTGGCGTGGGCTAGCAAGCTTTCTCCTCGCATGGCTTGGCCT--CCCCAGGGCACTGTTCCTGGGCTCTGATGGTCAGTTGAGTCTTGTGAGTAAAGCCCTGGGAGGGAACACTGTCCTG-GTGCCAGCCTCCGCCCACTGCCTCTGCCCCTGTGCTGCCTG----GCCCTGCACAGA--CCCCTC-GGCGTGGGAGCCTCAGCTCTCT-CCTTCC-TCACTCTTCA-------------TC-------------CAGAAGGAGATCAGTCCTCCTGGCCCCACACACAGGTCTCGCAGC--CGAGAGGCT---CCGTTCCTGGGTCAGTA------GTGGGC-TTCCATTCTGGGCTCCTGCTGCAGTGGTGCATGTTCCCTGCGCT--TCCTGTTTCTCTGCCTCTGTGCTATCTGTGAAGGCTGAGCAGCACTCCTTGTCCAAGTCCGTGCCC---TTGTTTTCTTATTGGTGAAACATTTGTGAATCTGAGCATGGAATTCAGCTCATTCCAGGACAGGG-GACCT---GGTTCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8227081 972 - 8369578 GGCAGCCAGGAGCTTACAAAGGAGCCGATGCCACATGCTG-CCACTGTGC--CTGGCTCTCTCCATGGTGGAGAC-----------ttgtt-----------gccctcatttt--cggatggggaaagtgaggcccagggagatgaggtgggc--gccccaggcatccagatcccccagctagtaggaagcagggcc----------------------tgctgacctggaacccaggcc----------AA----GGGAAGGA----T-----------GGAGTGGG--------GT-----------------------AAAACAGTGCTCTTCACGGAACATGTGGGGGCAAGTGTCCGCCCTAAGCAGGGGCAGGATGCTCAACACGGGG----CTGAG-CCCTGCTGAAAACAGCTCAGCAGAGATGTG-TGCACACCACGGCCGGACTGGCGATGTCTGAATCCATTTCCAGCCAAGGAGGCTTTCAAGGAG-----AGTGAGAGTAGGTCACTATTGAGGCCCCCATACATCTTGCAAATCAATCTGTAAGATGACCCTGTCCCCCAC-A-CCAGAGGGCTCATCTGCTGTCAGTGAGGGTAACGTGGTGTGGCGTAGGCTAGCAAGCTTTCTCCTCGCATGGCTTGGCCT--CCCCAGGGCACTGTTCCTGGGCTCTGATGGTCAGTTGAGTCTTGTGAGTAAAGCCCTGGGAGGGAACACTGTCCTG-GTGCCAGCCTCCGCCCACTGCCTCTGCCCCTGTGCTGCCTG----GCCCCGCACAGA--CCCCTC-GGCGTGGGAGCCTCAGCTCTCT-CCTTCC-TCACTCTTCA-------------TC-------------CAGAAGGAGATCAGTCTTCCTGGCCCCACACACAGGTCTCGCAGC--CGAGAGGCT---CCGTTCCTGTGCCAGTA------GTGGGC-TTCCATTCTGGGCTCCCGCTGGAGCGGTGCATGTTCCCTGCGCT--TCCTGTTTCTCTGCCTCTGTGCTGCCTGTGAAGGCTGAGCAGCACTCCTTGTCCAAGTCCGTGCCC---TTGTTTTCTTATTGGTGAAACATTTGTGAATTTGAGCATGGAATTCAGCTCATTCCAGGACAGGG-GACCT---GGTTTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97885326 973 + 106955855 GGCGACCAGGAGCTTACAAAGGAGCCGACACCACATGCTG-CCACTGCGC--CTGGCTCTCTCCATggtggggac---------tgttgtt-----------gccctcttttt--cggatggggaaagtgaggcccagggagatgaggtgggt--gccccaggcatccagatcccccagctagtaggaagcagggcc----------------------tgctgaccttgaacccaggcC----------AA----GGGAAGGA----C-----------GGAGTGGG--------GT-----------------------AAAACAGTGCTCTTCACGGAACACTCGGGGACAAGTGTCCGCCCTAAGCGGGGGCAGGGTGCTCAACACAGGG----CTGAG-CCCTGCTGAAAATAGCTCAGCAGAGATGCG-TGCACACCACGGCCGGACTGGC-ATGCCTGGATCCATTTCCAGCCAAGGAGGCTTTCAAGGAG-----GGTGAGAGTAGGTCACTATTGAGGCCCCCATACATCTTGCAAATCAATCTGTAAGATGACCCTGTCCCCCAC-A-CCAGAGGGCTCATCTGCTGTCAGCGAGGGTGACCTGGTGTAGCATGGGCTAGCAAGCTTTCTCCCCGCATGGCTTGGCCT--CCCCAGGGCACTGTTCCTGGGCTCTGATAGTCAGTTGAGTCTTGTGAGTAAAGCCCC-GGAGGGAACGCTGTCCTG-GTGCCAGCGTCCGCCCACTGCCTCTGCCCCTGTGCTGCCTG----GCCCAGCACAGA--CCCCCCTGGCGTGGGAGCCTCAGCTCTCT-CCTTCC-TCACTCTTCA-------------TC-------------CGGAAGGAGGTCAGTCTTCCTGGCCCCACACACGGGTCTTGCAGC--CGAGAGGCT---CCGTTCCTGGGTCAGTA------GTGGGA-TTCCATTCTAGGCTCCCGGTGGAGCGGTGCATGTTCCCTGCGCT--TCCTGTTTCTCTGCCTCTGTGCTGCCTGTGAAGGCTGAGCAGCACTCCTTGTCCAAGTCCATGCCC---TTGTTTTCTTGTTGGTGAAACATTTGTGAATTTGAGCACAGAATTCATCTCATTCCAGGACAGGA-GACCT---GGTTCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124000493 968 + 133663169 GGCGACCAGGAGCTTACGAAGGAGCTGACACCACGTGCTG-CCTCCGCGC--CTGGCTctctccgaggtgggaac---------tgttgtt-----------gccctcatttt--cggatgaggaaagcgaggcccagggagatgaggc-ggc--accccaggcatccagctcccctggctagtaggaagcagggcc----------------------tgccgaccttgaacccaggcC----------AA----GGGAAGGA----T-----------GGAGTGGG--------GT-----------------------AAAACAGTGCTCTTCACGGAACACGTGGGCGCAAGTGTCTGCCCT-CGCAGGGACAGAGTGCTCAACACAGGG----C-GAG-CCCTGCTGAAAACAGCTCGGCAGAGATGTG-TGCACACCATGGCCAGACTGGCGATGCCTGAATCCATTTCTGGCCAAGGAGGCTTTCAAGGAG-----GGTGAGAGTAGGTCACTATTGAGGCCCCCATATATCTTGCAAATCAATCTGTAAGACGACCCTGTCCCCCAC-A-CCAGAGGGCTCATCTGCTGTCAGCGAGGGTGACCTGGTGTGGCCTGGGCCAGCAAACTTTCTCCCCGCAAGGCTTGGTCT--CCCCAGGGCACTGTTCCTGGACTCTGATGGTCAGCTGAGTCTTGTGAGTAAAGCCCAAGGAGGGAACAATGTTCTG-GTGCCAGCCTCTGCCCACTGCCTCTGCCCCCGTGCTGCCTG----GCCCCACACAGA--CCCCCC-GGCGTGGGAGCCTCAGTTCTCT-CCTTCC-TCACTCTTCA-------------TC-------------CGGA---AGATCAGTCTTCCTGGCCCCACACACAGGTCTCTCATC--CAAGAGGCT---CCATTCCTGGGTCAGTA------GTGGGC-TTCCGTTCTGGGCTCCCGGGGGAGTAGTGCGTGTTCCCCGCGCT--TCCTGTTTCTCTGGCTCTGTGCTGCCTGTGAAGGCTGAGCAGCACTCCTTATCCAAGGCCGTACCC---TTGTTTTCTTGTTAATGAAACATTTGTGAATTTGAACACAGAATTCAGCTCATTCCAGGACAGGG-GACCT---AGTTCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128248594 968 + 137757926 GGCGACCAGGAGCTTACGAAGGAGCTGACACCACGTGCTG-CCTCTGCGC--CTGGCTctctccgaggtgggaac---------tgttgtt-----------gccctcatttt--cggatgaggaaagcgaggcccagggagatgaggc-ggc--accccaggcatccagctcccctggctagtaggaagcagggcc----------------------tgccgaccttgaacccaggcC----------AA----GGGAAGGA----T-----------GGAGTGGG--------GT-----------------------AAAACAGTGCTCTTCACGGAACACGTGGGCGCAAGTGTCTGCCCT-CGCAGGGACAGAGTGCTCAACACAGGG----C-GAG-CCCTGCTGAAAACAGCTCGGCAGAGATGTG-TGCACACCACGGCCAGACTGGCGATGCCTGAATCCATTTCTGGCCAAGGAGGCTTTCAAGGAG-----GGTGAGAGTAGGTCACTATTGAGGCCCCCATATATCTTGCAAATCAATCTGTAAGACGACCCTGTCCCCCAC-A-CCAGAGGGCTCATCTGCTGTCAGCGAGGGTGACCTGGTGTGGCCTGGGCCAGCAAACTTTCTCCCCGCAAGGCTTGGTCT--CCCCAGGGCACTGTTCCTGGACTCTGATGGTTAGCTGAGTCTTGTGAGTAAAGCCCAAGGAGGGAACAATGTTCTG-GTGCCAgcctctgcccactgcctctgcccctgtgctgcctG----GCCCCACACAGA--CCCCCT-GGCGTGGGAGCCTCAGTTCTCT-GCTTCC-TCACTCTTCA-------------TC-------------CGGA---AGAGCAGTCTTCCTGGCCCCACACACAGGTCTCACATC--CAAGAGGCT---CCATTCCTGGGTCAGTA------GTGGGC-TTCCGTTCTGGGCTCCCGGGGGAGTAGTGCGTGTTCCCCGCGCT--TCCTGTTTCTCTGGCTCTGTGCTGCCTGTGAAGGCTGAGCAGCACTCCTTATCCAAGGCCGTGCCC---TTGTTTTCTTGTTAATGAAACATTTGTGAATTTGAACACAGAATTCAGCTCATTCCAGGACAGGG-GACCT---AGTTCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10647180 968 - 16319837 GGCGACCAGGAGCTTACGAAGGAGCTGACACCACGTGCTG-CCTCCGCGC--CTGGCTctctccgaggtgggaac---------tgttgtt-----------gccctcatttt--cggatgaggaaagcgaggcccagggagatgaggc-ggc--accccaggcatccagctcccctggctagtaggaagcagggcc----------------------tgccgaccttgaacccaggcC----------AA----GGGAAGGA----T-----------GGAGTGGG--------GT-----------------------AAAACAGTGCTCTTCACGGAACACGTGGGCGCAAGTGTCTGCCCT-CGCAGGGACAGAGTGCTCAACACAGGG----C-GAG-CCCTGCTGAAAACAGCTCGGCAGAGATGTG-TGCACACCACGGCCAGACTGGCGATGCCTGAATCCATTTCTGGCCAAGGAGGCTTTCAAGGAG-----GGTGAGAGTAGGTCACTATTGAGGCCCCCATATATCTTGCAAATCAATCTGTAAGACGACCCTGTCCCCCAC-A-CCAGAGGGCTCATCTGCTGTCAGCGAGGGTGACCTGGTGTGGCCTGGGCCAGCAAACTTTCTCCCCGCAAGGCTTGGTCT--CCCCAGGGCACTGTTCCTGGACTCTGATGGTCAGCTGAGTCTTGTGAGTAAAGCCCAAGGAGGGAACAATGTTCTG-GTGCCAgcctctgcccactgcctctgcccctgtgctgcctG----GCCCCACACAGA--CCCCCC-GGCGTGGGAGCCTCAGTTCTCT-CCTTCC-TCACTCTTCC-------------TC-------------CGGA---AGATCAGTCTTCCTGGCCCCACACACAGGTCTCTCATC--CAAGAGGCT---CCATTCCTGGGTCAGTA------GTGGGC-TTCCGTTCTGGGCTCCCGGGGGAGTAGTGCGTGTTCCCCGCGCT--TCCTGTTTCTCTGGCTCTGTGCTGCCTGTGAAGGCTGAGCAGCACTCCTTATCCAAGGCCGTACCC---TTGTTTTCTTGTTAATGAAACATTTGTGAATTTGAACACAGAATTCAGCTCATTCCAGGACAGGG-GATCT---AGTTCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12270845 967 + 20526591 GGCGACCAGGAGCTTACGAAGGAGCCGACACCACGCGCTG-CCTCTGCGC--CTGGCTctctccgcggtgggaac---------tgttgtt-----------gccctcatttt--cggatgaggaaagcgaggcccagggagatgaggc-ggc--accccaggcatccagctcccctggctagtaggaagcagggcc----------------------tgccgaccttgaacccaggcC----------AA----GGGAAGGA----T-----------GGAGTGGG--------GT-----------------------AAAACAGTGCTCTTCATGGAACACGTGGGCGCAAGTGTCTGCCCT-CGCAGGGGCAGAGTGCTCAACACAGGG----C-GAG-CCCTGCTGAAAACAGCTCGGCAGAGATGTG-TGCACACCACGGCCAGACTGGCGATGCCTGAATCCATTTCTGGCCAAGGAGGCTTTCAAGGAG-----GGTGAGAGTAGGTCACTATTGAGGCCCCCATACATCTTGCAAATCAATCTGTAAGACGACCCTGTCCCCCAC-A-CCAGAGGGCTCATCTGCTGTCAGCGAGGGTGACCTGGTGTGGCCCGGGCCAGCAAACTTCCTCCCCACGAGGCTCGCTCT--CCCCAGGGCACTGTTCCTGGACTCTGATGGTCCGTTGAGTCTTGTGAGTAAAGCCCAAGGAGGGAACAATGTTCTG-GTGCCAGCCTCTGCCCACT-CCTCTGCCCCTGTGCTGCCTG----GCCCCACACAGA--CCCCCC-GGCGTGGGAGCCTCAGTTCTCT-CCTTCC-TCACTCTTCA-------------TC-------------CGGA---AGATCAGTCTTCCTAGCCCCACACCCAGGTCTCGCATC--CAAGAGGCT---CCATTCCTGGGTCAGTA------GTGGGC-TTCCGTTCTGGGCTCCCGGGGGAGTAGTGCGTGTTCCCCGCGCT--TCCTGTTTCTCTGGCTCTGTGCTGCCTGTGAAGGCTGAGCAGCACTCCTTATCCAAGGCCGTGCCC---TTGTTTTCTTGTTAATGAAACATTTGTGAATTTGAACACAGAATTCAGCTCATTCCAGGACAGGG-GACCT---AGTTCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119242612 959 + 128539186 GGTGACCAGGAGCTTACGAAGGAGTCGACACCACGTGCTG-CCTCTGCGC--CTGGCTctctctgcggtgggaac--------------ct-----------catctcatttt--cggatgaggaaagtgaggcccagggagatgaggtgggc--accccaggcatccagctcccctggctagtaggaagcagggcc----------------------tgccgaccttgaacccaggcc----------AA----GGGAAGGA----T-----------GGAGTGGG--------GT-----------------------AAAACAGTGCTCTTTACGGAACACGTGGGCGCAAGTGTCTGCCCT-CGTAGGGGCAGAGTGCTCAACACAGGG----C-GAG-CCCTGCTGAAAACAGCTCGGCAGAGATGTG-TGCACACCACGGCCAGACTA-----GCCTGAACCCATTTCTGGCCAAGGAGGCTTTCAAGGAG-----GGTGAGAGTAGGTCACTATTGAGGCCCCCATACATCTTGCAAATCAATCTGTAAGACGACCCTGTCCCCGAC-A-CCAGAGGGCTCATCTGCTGTCAGCAAGGGTGACCTGGTGTGGCCTGGGCCAGCAAACTTTCTCCCCGCAAGGCTTGGTCT--CCCCAGGGCACTGTTCCTGGACTCTGATGGTCAGTTGAGTCTTGTGAGTAAAGCCCAAGGAGGGAACAATGTTCTG-GTGCCAgcctctgcccactgcctctgcccctgtgctgcctG----GCCCCACACAGA--CCCCCC-AGCGTGGGAGCCTCAGTTCTCT-CCTTCC-TCACTCTTCA-------------TC-------------CGGA---AGATCAGTCTTCCTAGCCCCACACACAGGTCTCGCAGC--CAAGAGGCT---CCATTCCTGGGTCAGTA------GTGGGC-TTCCGTTCTGGGCTCCCGGTGGAGTAGTGCGTGTTCCCCGCGCT--TCCTGTTTCTGTGGCTCTGTGCCGCCTGTGAAGGCTGAGCAGCACTCCTTATCCAAGGCCGTGCCC---TTGTTTTCTTGTTAATGAAACATTTGTGAATTTGAACACGGAATTTAGCTCATTCCAGGACAGGG-GACCT---GGTTCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 584702 968 + 6255621 GGCGACCAGGAGCTTACGAAGGAGCCGACACCACGTGCTG-CCTCCGCGC--CTGGCTctctccgcggtgggaac---------tgttgtt-----------gccctcatttt--cggatgaggaaagcgaggcccagggagatgaggc-ggc--accccaggcatgcagctcccctggctagtaggaagcagggcc----------------------tgccgaccttgaacccaggcC----------AA----GGGAAGAA----T-----------GGAGTGGG--------GT-----------------------AAAACAGTGCTCTTCACGGAACACGTGGGCGCAAGTGTCTGCCCT-CGCAGGGGCAGAGTGCTCAACACAGGG----C-GAG-CCCTGCTGAAAACAGCTCGGCAGAGATGTG-TGCACACCACGGCCAGACTGGCGATGCCTGAATCCATTTCTGGCCAAGGAGGCTTTCAAGGAG-----GGTGAGAGTAGGTCACTATTGAGGCCCCCATACATCTTGTAAATCAATCTGTAAGACGACCCTGTCCCCCAC-A-CCAGAGGGCTCATCTGCTGTCAGCGAGGGTGACCTGGTGTGGCCTGGGCCAGCAAACTTTCTCCCCGCAAGGCTTGGTCT--CCCCAGGGCACTGTTCCTGGACTCTGATGGTCAGTTGAGTCTTGTGAGTAAAGCCCAAGGAGGGAACAATGTTCTG-GTGCCAgcctctgcccactgcctctgcccctgtgctgcctG----GCCCCACACAGA--CCCCCC-GGCGTGGGAGCCTCAGTTCTCT-CCTTCC-TCACTCTTCA-------------TC-------------CGGA---AGATCAGTCTTCCTGGCCCCACACACAGGTCTCGCAGC--CAAGAGGCT---CCATTCCTGGGTCAGTA------GTGGGC-TTCCATTCTGGGCTCCCGGGGGAGTAGTGCGTGTTCCCCGCGCT--TCCTGTTTCTCTGGCTCTGTGCTGCCTGTGAAGGCTGAGCAGCACTCCTTATCCAAGGCCGTGCCC---TTGTTTTCTTGTTAATGAAACATGTGTGAATTTGAACACAGAATTTAGCTCATTCCAGGACAGGG-GACCT---GGTTCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4620063 972 - 8658521 GGCGACCAGGAGCTTACAAAGGAGCCGACAGCACGTGCTG-CCTCCACGC--CTGACTGTctccgcggtgggaac---------tgttgtt-----------gccctcatttt--tggatgaggaaagcgaggctcagggagataaggcgggc--accccgggcatccagctcccccagctagtaggaagcagggcc----------------------tgctgaccttgaacccaggcc----------AA----GGGAAGGA----T-----------GGAGTGGG--------GT-----------------------AAAACTGTGCTCTTCACAGAACACATTGGGACAAGTGTCCGCCCT-CGCAGGGGCAGAGTGCTCAACACAGGG----C-AAG-CCCTGCTGAAAACGGCTCAGCAGAGATGTG-TGCACACCACGGCCAGACTGGCGATGCCTGAATCCTTTTCTGGCCAAGGAGGCTTTCAAGGAG-----GGTGAGAGTAGGTCACTATTGAGGCCCCCATACATCTTGCAAATCAATCTGTAAGACGACCCTGTCCCCCAC-A-ACAGAGGGCTCATCTGCTGTCAGCGAGGGTGACCTGGTGTCGCGTGGGCCAGCAAACTTTCTCCCCGCATGTCTTGGTCT--CCCCAGGGCACTGTTCCTGGACTCTGATGGTCAGTTGAGTCTTGTGAGTAAAGCCCAAGGGGGGAACACTGTTCTG-GTGCCAgcctccgcccactgcctctgcctctgtgctgcctG----GCCCCACACAGA--CCCCCC-AGCGTGGGAGCCTCAGTTCTCT-CCTTCC-TCACTCTTCA-------------TC-------------TGGAAGGAGATCAGTCTTCCTGGCCCCACACACAGGTCTCGCAGC--CAAGAGGCT---CCATTCCTGGGTCAGCA------GTGGGC-TTCCGTTCTGGGCTCCCGGTGGAGTAGTGCGTGTTCCCTGCACT--TCCTGTTTCTCTGCCTCTGTGCTGCCTGTGAAGGCTGAGCAGCACTCCTTATCCAAGGCCGTGCCC---TTGTTTTCTTGTTCATGAAACATTTGTGAATTTGAACACGGAATTCAGCTCATTCCAGGACAGGG-GACCT---GGTTCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114820501 863 + 124281992 GGTGACCAGGAGCTAACAAAGGAGCTGACGCCACGTGCTG-CCACTGTGC--CTGGCTCTCTCCACggtgggcac---------tgttgtt-----------gccctcatttt--cagatcaggaaagtgagaccctgggagatgaggtaggc--tccccaggcatccaagccctccagctagcagggagcagggcc----------------------tgctgaccttgtacccaggcC----------AA----GAGAAGGA----T-----------G-AGTGGG--------GT-----------------------TAAGCAGTGCCCCTCACAGCACACAT-GGGGTACGTGTC--CCCTAAGCAGGGGCT-----------------------GAG-CCCTG-TGAAAACTGTTCAGCAGACATGTG-TGCATGCCATGGCCGGACGGGCAATGTCTGAATCCATCTCCAGCCAAGGGCACTTTCAAGGCG-----GGTGAGAGTA--TCACTACTGAGGCACCCATATATCTTACAAATCAATCTGTGAAATGATCCAGTCCCCCAC-A-CCAGAAGGCTCGTCTGCTGTCAGCGAGGGTG-CCTGGTGTG-------------------------TCATGGCCTGGCCT--CCCCAGGGCACTGTTCCTGGATTTTGATAGTCTGTTGAGTCTTATGAGTAAAGCCTCAGGAGGAAACACTGTCCTG-GTG-----------CCACGGCCTCTGCCCCCATGCTGCCCA----GCCCCCCACAGAA-CCCCCC-AGCTCGGGAGCCTTGGCTCTGT-CCTTCC-TCACTCTTTG-------------TC-------------CAGAAGGAGATCAGTACTCCCAGCCCCACACATGGGTCTGGCAGC--TGAGAGGCTC--CCAT-----------TA------GTGGGC-TTCCATTCTGGGCTCCCGGCGGAGTGGTGCGCGTTCCCTGTGCT--TCC---------------------------------------CACTCTTTGTCCAAGGCCGTGCCC---TTGTTTTCTTGTTAGTGAAATGTCTGTGAATCTGAGCACAGAATGCAGCTCATTCCAGGACAGGG-GACCT---GGGTCT i calJac3.chr9 I 146 C 0 s saiBol1.JH378194 465012 933 - 9212255 GGTGACCAGGAACTTACAAAGGAGCTGACGCCATGTGCCG-CCACTGTGC--CTGGCTCTCTCcatggtgggc------------gctgtt-----------gccctcatgtt--tggatgaggaaagtgagacccagggagatgaggcaggc--tccccaggcatccaggccctccagctagtagggagcagggcc----------------------tgctgaccttgaacccaggcc----------AA----GGGAAGGA----T-----------GAAGCGCA--------GT-----------------------AAAGCAGTGCCCTTCACAGAACACGT-AGGGTAAGTGTCCGCCCTCAGCAGGGGCT-----------------------GAG-CGCTG-TGAAAACTGCTCAGCAGAGATGTG-TGCATGCCGTGGCCGGACTGGCAATGTCCGAATCCATCTCCAGCCAAGGGGGCTTTCAAGGCG-----GGTGAGAGTACGTCACTACTGAGGCACCCACACATCTTACAAATCAATCTGTAAAATGACCCAGTCTCTCAC-A-CCAGAGGGCTCGTCTGCTGTCAGCGAGGGTG-CCTGGTGTGGCATGGACTAGCGAGCTTTCTTCCCGCATGGCCTGGCCT--CCCTGGGGCACTGTTCCTGGATTTTGATGGTCAGTTGAGTCTTGTGAGTAAAGCCTCAGAAGGGAACACTGTCCTG-GTGCCAGCCTCTGCCCACCACCTCTGCCCCCATGCTGCCCA----GCCCCGCACAGAA-CCCCCC-AGGGCCGGAGCCTCAGCTGTAT-CCTTCC-TCACTCTTTG-------------TC-------------CAGAAGGAGATCAGTGCTCCCGGCCCCACACATGGGCCTCACAGC--TGAGAGGCTC--CCGTTCCTGGGTCGCTA------GTGGGC-TTCCATGCTGAGCTCCCGGCGGAGCGGTGTGCGTTCCCTGTGCG--TCCTGTTTCTCTGCCT------------------CTGAGCAGCACTCCTTGTCCAAGGCCGCGCCC---TTGTTTTCTTGTTAGTGAAAGGTCTGTGAATCTGAGCACAGAATTCAGCACATTCCAGGACAGGG-TCCCT---GGGTCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2879420 934 + 4466143 GGTGACCAGGAGCTTACAAAGGACCTGACGCCACGTGCTG-CCACTGTGC--CTGGCTCTCTCcacggtgggc------------gctgtt-----------gctctcatttt--caggtgagtaaactgagacccggggagatgaggcaggc--tccccaggcatccaggccctccagctagtagggagcagggcc----------------------tgctgaccttgaacccaggcc----------AA----GGGAAGGA----T-----------GAAGCGCG--------GT-----------------------AAAGCAGTGCCCTTCACAGAACACATGGGGGTAAGTGTCCGCCCTAAGCAGGGGCT-----------------------GAG-CCCTG-TAAAAACTGCTCAGCAGAGATGTG-TGCATGCCGTGGCTGGACTGGCGATGTCCGAATCCATCTTCAGCCAAGGGGGCTTTCAAGGCG-----GGTGAGAGTAGATCACTACTGAAGCACCCATACATCTTACAAATCAATCTGTAAATTGACCCAGTCTCCCAC-A-TCAGAGGGCTCGTCTGCTGTCAGCGAGGGTG-CCTGGTGTGGCATGGGTTAGCGAGCTTTCTTCCCGCATGGCCTGGCCT--CCCCAGGACACTGTTCCTGGATTTTGATGGTCAGTTGAGTCTTGTGAGTAAAGCCTCAGGAGGGAACACTGTCCTG-GTGCCAGCCTCTGCCCACCGCCTCTGCCCCCGTGCTGCTCC----ACCCCGCAAAGAA-CCCCCC-AGGACGGGAGCCTCAGCTGTGT-CCTTCC-TCACTCTTTG-------------TC-------------CGGAAGGAGATCAGTGCTCCCAGCCCCACACATGGGTCTTGTAGC--TGAGAGGCTC--CCGTCCCTGGGTCAGTA------GCGGGC-TTCCATTCTGGGCTCCCGGTGGAGTGGTGTGCATTCCCTGTGCT--TCCTGTTTCTCTGCCT------------------CTGAGCAGCACTCCTTGTCCAAGGCTGTGCCG---TTGTTTTCTTGTTAGTGAAATGTCTGTGAATCTGAGCACATAATTCAGCTCATTCCAGGACAGGG-GACCT---GGGTCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1586535 912 + 5364348 GGTGACCGGGAGCTTACAAAGGAGCTGACGCCACGTGCTG-CCACTGTGC--CTGGCTCTCTCCACggtgggcac---------tgttgtt-----------gccctcatttt--cggatgaggaaagtgagacccagggagatgaggtaggc--tccccaggcatccaggccctctggctagtagggagcagggcc----------------------tgctgaccttgaacccaggcC----------AA----GGGAAGGA----T-----------GAAGCGGG--------GT-----------------------AAAGCAGTGCCCTTCACAGAACACATGAGGGTAAGTGTCCGCCCTAAGCAGGGGCT-----------------------GAG-CCCTG-TGAAAACTGCTCAGCAGAGATGTG-TGCATGCCGTGGCCGGACTGGCGATGTCCGAATCCATCTCCAGCCAAGGGGGCTTTCAAGGCG-----GGTGAGAGTGGGTCACGATTGAGGCACCCATACATCTTACAAATCAATCTGTAAAATGACCCAGTCCCCCAC-A-CTGGAGGGCTCGTCTGCTGTCAGCGAGGGTG-CCTGGTGTG-------------------------GCCTGGCCTGGCCT--CCCCAGGGCGCTGTTCCTGGATTTTGATGGTCAGTTGAGTCTTGTGAGTAAAGCCTCAGGAGGAAACACTGTCCTG-GTGCCAGCCTCTGCCCACCGCCTCTGCCCCCGTGCCGCCCA----GCCCCGCACAGAACCCCCCC-AGCGCGGGAGCCTCGGCTCCGT-CCTTCC-TCACTCTTTG-------------TC-------------CAGAAGGAGATCAGCGCT-CCGGCCCCACACATGGGTCTCGCAGC--TGAGAGGCTC--CCGTTCCCGGGTCAGTA------GGGGGC-TTCCATTCTGGGCTCCCGGCGGAGTGGTGTACGTTCCCTGTGCT--TCCTGTTTCTCTGCCT------------------CTGAGCAGCACTCCTTGTCCAAGGCCGTGCCC---TTGTTTTCTTGTTAGTGAAATGTCTGTGAATCTGAGCACAGAATTCAGCTCATTCCAGGACAGGC-GACCT---GGATCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4310020 923 + 7922563 --------AGCACTTGGGAAGG-GCTCACACCACATGCTG--------------AGCACTCTCCTTGG-GGGCAC---------CGCTGTT-----------GCTGTCATTTG--CAGATGAGGACAGTGAGGCCCAGGG-----------------CCCAGGTAGCTG---CCCCCAGCTA-TAGGGAGCAGGGCTGCTGGAGAAGGAGGCTCCAGAATGGTGTTTTGGTGACTGGG-------------G----AGGAGGGA----T-----------GCAGTATT--------GT-----------------------ACATCAGCCCTTGTCACAGAA---------ATAAGTGTCTGCTCTAAACCATAGCAGGGTGATCAGTATGGGGGGC-C-ATG-CCCTCCTGAAAATAGTACAGCAAAGCTGAGCCACATACCAAGGCTGGATGGGCAACACCCTGATCCATTTCTAG-GAAACAGGTTTTCTAGAGG-----TGGGAGGCTGGGTCATTATTG-TGCCCCCAT-----CTGCAAATCAATGTGTAAGATGTCTCTGTCCCCTACAA-CCAGAGGTTCTGTCTGCTGTCAGGATGAGGGATCTGGTGTGGGGCAGCTGTATGCACTTCCCCCCTG--TGGACTGGTCT--ACCCAGGCCACCATTACTGGATTTTATTGGTGAACTTAGTGGCACGAGTAAAGCCCCAGGAAGGGACACTGTCCCA-G---------CAGCCCATCTGCCCTGCCCCC-TGCTGCCTG----GTTCTGCACTGAATTCCCCA-GGCCTGGGAGCCCCTGCTGTCT-TCTTCTGTCATTCTTCATTGCACGCTCATTTC-------------CAGAAGGAAAATCATCCCTGTGGCCCCACAGGCAGGTCTCACAGC--TGGGAGACACTACTGTTTCCAGGTTGGTA------GCTGACTTTCTGTCACAGGCTCCTGGTGGAACAATACTGGTTCTCCAGGCT--TCTCCATTCTCTGT-------------------GCTGAGCAGCACTCCCTGTTGAAGGCTGTGTCC---TTGTTTTCTTGTTAGTGAAATGTGTGTGAAATTG-------AATTCAGCTCGTTCTAAGACAGGG-GACCT---GAGTTA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33162537 957 - 38964690 AGCAGATAGGCATTCCTAGAG----CCATACTGCAGGCTGACTACTGTGCTATAAACACTTCCCTGGGTGGGTGCTGGCATTGCtgttatc-----------atccttgtttg--aagatggggaaggtgaggcccagggtggtgaggt-ggcttgccccaggtg-------cccccactcagcaggtcgcagggcc----------------------tattgcctttgaacttgggctgtctcacAGAAG----GGGACTGAGTTCC-----------GGAGTGGG--------GTGTGCAGGAGAGGTGGGGCTTCACAAGCCAGTGCTCTCCTCAGGAAGCCC----ACTACTGTCTGCCCTGAACACCAGCCAGGCACCTGGTGCAGGGGGCAA-GCG-CCCTGCTGAAAATACTGTGACAGCTGTGTC-T-----CTGAGGACTGATAGGGGATGCTCTCATCCACTTCAAGCCAAG--------CCATGTGCATGTGGGGAAAGTGGCTCTTCATTGTGGC-CCCAGGCATTTGGCAAGTCAATCTGTGAAATGACTGCAGCTCCCACAA-CCAGAGGCCTC--------CCAGGAGAAGGGGCCCGGGATGGCGCCGGCGGG-GAGCTTTCTCCCCACATTGTGTGGTCTGACCCTAGGGTGCCCCTAATAGAGCTCACTGGTAAATGTAGCACCAAGACTAAAGGC--AGGAAGGAGCACTCCCCTGTGTGCTGGCC-CCACACACAGCTCCCCACTCCCCGGTGAC--------------------CCCCTC-AATC------CCTCAGCTCTCC-CCATCA-CATCCTCATT-------------TG-------------CAGGAGGGGTTCAGTCCCCCGGGCCCCACAACCAGGTCTCGTGTT--AGAGAGACTC--CTGCTTTCAGGTCAGGATCAGAGGTTGACTTTCCATCTTGGGCTCTGGGAAGAATGAGGCTTGTTCTCTATGCT--TCTCGCTCTTAC----------------TGAGGGCTGAACAGCCTTCCTT-----------TGCCCTTGTTGTTTGCTCGGTAGTGAAACA--TGGCGATTTGAACAGAATCTTCAGCTTGTTCCATGGCAGAG-GACCC---AAGCAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 845432 897 - 1116856 GGCAATTAGGC------------------------------CTGCTGGGC--GTAGCATTTTCCACG-------C---------CCTTCCTTCCTTCCCTAAGtcctcatctctacagatga--------aggctcagggaggggaaggggat-----tgaaccat------------gctcgggagttgcagggcc----------------------t---gaccttggactcaggct----------gactccGGTAAGGA----CACCGGGCTCCAGAAGGAGGCTTTGTGAGC-----------------------AAGCGGGTCCTCTGCACAGAAAGGAT-GACTCAAG-GTCTGCCCTAAACAGTGGCGGAGCTCTTA----GAGG----T-GAGTTTCCTCTGGGAAAGGCTCGGCA--------------ACCTAGGCTGGTC-AGTGATGCCGTAACCCTTTCCTAGCCAAGGGCGCTCGGAAGAGA-----TGGGGAGATGGCTCAGTCTTGTGGT---------TTTTGCAAATAAATCTGCCAAGTGACTCCCTCCCCACC-AGCTAGAGGGCTCCTC----ATCAGGAGGAGAGGCCTGCAGGGGCAGG------------CTCTCTCCACACAGCCTGGTTT--CCCCAGGGCACTGTTAACGG-TCGTGATGGTATAATTAGCGCTGTGAGGGAAGTTCTAG-AAGCAATTCTGCCCTGGGTGTCTGCCTTCACCCAC-----CCAGGCCTGTGCTGTCTGCTGTGCCCTGAAGAGTT-CCCTTT-TGTCTGAGAACCCCAGCCCTCTCCCTTCC-TCACTCCTCA-------------TCACGCCCGCGTCTTCAGAAGTGGTTCCATCTTCCTGGCCCCCTGGAGGGGTCCCTGCACAATGAGAGGCTC--CCACTTTGGAGTTTTTG-------------TGCCATGTTGGCTTCCTGATGAAACGATGCCGCTTCTCAGTGCTCACCTCGTTTC------------------ATGACGGCCGAGTGGCCTTTCTTGTGAAAGACCGTGCC----TTGTGTTCTCATTTGTGAAATATATGTGGATTCAAATGGGGCACTGCGTTCATTCCAGAGCAGAG-GACCT---GATTAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6724259 961 - 9870158 I a score=882762.000000 s hg38.chr12_KI270834v1_alt 77651 59 + 119498 TTCTTGGGAGGTCACTTGGAGGTGCTGCTGTGGTCAGCAAGAAGTCATTAGTTCAGTGT--- s panTro5.chr12 127363649 59 + 137163284 TTCTTGGGAGGTCACTTGGAGGTGCCACTGTGGTCAGCAAGAAGTCATTAGTTCAGTGT--- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125714692 59 + 135337776 TTCTTGGGAGGTCACTTGGAGGTGCCACTGTGGTCAGCAAGAAGTCATTAGTTCAGTGT--- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8228053 59 - 8369578 TTCTTGGGAGGTCACTTGTAGGTGCCGCTGTTGTCAGCAAGAAGTCATTAGTTCAGTGT--- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97886299 59 + 106955855 TTCTTGGGAGGTCACTTGGAGGTGCCGCTGTTGTCAGCAAGAAGTCATTAGTTCAGTGT--- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124001461 59 + 133663169 TTCTTGGGAGGTCACTTGGAGGTGCCACTGTTGTCAGCAAGAAGTCATTATTTCAGTGT--- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128249562 59 + 137757926 TTCTTGGGAGGTCACTTGGAGGTGCCACTGTTGTCAGCAAGAAGTCATTATTTCAGTGT--- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10648148 59 - 16319837 TTCTTGGGAGGTCACTTGGAGGTGCCACTGTTGTCAGCAAGAAGTCATTATTTCAGTGT--- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12271812 59 + 20526591 TTCTTGGGAGGTCACTTGGAGGTGCCACTGTTGTCAGCAAGAAGTCGTTATTTCAGTGT--- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119243571 59 + 128539186 TTCTTGGGAGGTCACTTGGAGGTGCCACTGTTGTCAGCAAGAAGTCGTTATTTCAATGT--- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 585670 59 + 6255621 TTCTTGGGAGGTCACTTGGAGGTGCCACTGTTGTCAGCAAGAAGTCATTATTTCAGTGT--- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4621035 59 - 8658521 TTCTTGGGAGGTCACTTGGAGGTGCCACTGTTATCAGCAAGAAGTCATTATTTCAATGT--- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114821364 59 + 124281992 TTCTTGGTAGGTCACTTGGAGGTGCCGCTGTTGTCAGCAAGAAGTCATTGTTTTAGTGT--- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 465945 59 - 9212255 TTCTTGGAAGGTCACCTGGAGGTGCCGCTGTCGTCAGCAAAAAGTCCTTATTTCAGTGT--- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2880354 59 + 4466143 TTTTTGGGAGGTCACTTGGAGATGCTGCTGTTGTCAGCAAGAAGTCATTATTTCAGTGT--- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1587447 59 + 5364348 TTCTGGGGAGGTCACTTGGAGGTGCCGCTGTTGTCAGCAAGAAGTCATTATTTCAGTGT--- i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6725220 59 - 9870158 TTCTTCGGAGGTCACCTGGAGACGCCGCTGTTGTCAGCAAGAAGTCGTTATTTCAGTGT--- i proCoq1.NW_012154285v1 I 961 I 2162 s otoGar3.GL873618 4310943 59 + 7922563 TTCTTGGGAGGTCACCTGGAGATGCTATTGTTGTCAGCAAGAAGTCATTATTTCAGGGT--- i otoGar3.GL873618 C 0 I 10 s canFam3.chr26 33163494 59 - 38964690 TTCTTGGGAGGTGATCTGCAGATGCTCCTGCTGTTAGCAAGAAGGCATTGTTTCAGTTT--- i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 846329 62 - 1116856 TTCTTGGGAAATCATCTGGAGATGCCTCTGTTGTTAACAAGACATCATGATTTCAGTGTTTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I a score=4426507.000000 s hg38.chr12_KI270834v1_alt 77710 413 + 119498 TGAGGATGGTG--TC-AAGGAGGGTATAAGGATCGATGTATTAAAACTTCAGCACTAGGCGTtggaagtttaggctgaggtaccaggacacagtggaagtgcacacccagcggaggggtaggagacacggtcagcacacacatcctc-cagggaaatttctagctaccggtgatagg-atttgggccactgctcccaggtcagcagcataaaaacatcgtgaaagcagaga-ctaggaaggatttttgaaggggatttatttgaagagaaggaacggtgagtcccttccatcaatccaaggtggaggagtgggggggag-------------------------------c--------ttccatggggccaaatagagggcgtggca-tgtgtcccctgcagtgagacaggca------------------------ttgcagacaggtgccccgctcacccctgagaaagcctaag-ta-----------caa s panTro5.chr12 127363708 413 + 137163284 TGAGGATGGTG--TC-AAGGAAGGTATAAGGATCGATGTATTAAAACTTCAGCACTAGGCGTtggaagtttaggctgaggtaccaggacacagtggaagtgcacacccagcggaggggtaggagacacggtcagcacacacatcctc-cagggaaatttctagctaccggtgatagg-atttggggcactgctcccaggtcagcagcataaaaacatcgtgagagcagaga-ctaggaaggatttttgaaggggatttatttgaagagaaggaacggtgagtcccttccatcaacccaaggtggaggagtaggggggag-------------------------------c--------ttccatggggccaaatagagggcttggca-tgtgtcccctgcagtgagacaggca------------------------ttgcagacaggtgcccagctcacccctgagaaagcctaag-ta-----------caa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125714751 413 + 135337776 TGAGGATGGTG--TC-AAGGAAGGTATAAGGATCGATGTATTAAAACTTCAGCACTAGGCGTtggaagtttaggctgaggtaccaggacacagtggaagtgcacacccagcggaggggtaggagacacggtcagcacacacatcctc-cagggaaatttctagctaccggtgatagg-atttggggcactgctcccaggtcagcagcataaaaacatcgtgagagcagaga-ctaggaaggatttttgaaggggatttatttgaagagaaggaacggtgagtcccttccatcaacccaaggtggaggagtaggggggag-------------------------------c--------ttccatggggccaaatagagggcttggca-tgtgtcccctgcagtgagacaggca------------------------ttgcagacaggtgcccagctcacccctgagaaagcctaag-ta-----------caa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8228112 411 - 8369578 TGAGGATGGTG--TC-AAGGAAGGTGTAAGGATCGATGTATTAAAACTTCAGCACTAGGCGTtggaagtttagactgaggtaccaggatacagtggaagtgcacacccagcggaggggtaggagacacggtcagcacacacatcctc-cagggaaatttctagctaccggtgatagg-atttggggcactgctccccggtcagcagaataaaaacatcgtgaaagcagaga-ctaggaaggatttttgaaggggatttatttgaagagaaggaacggtgagtcccttccatcaacccaaggtggaggagt--gggggag-------------------------------c--------ttccatggggccaaatagagggcttggca-tgtgtcccctgcagtgagacaggca------------------------ttgcagacaggtgcccagctcacccctgagaaagcctaag-ta-----------caa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97886358 412 + 106955855 TGAGGATGGCG--TC-AAGGAAGGTATAAGGATGGATGTATTAAAACTTCAGCACTAGGCGTtgaaagtttaggctgagatgccaggacacggtggatgtgcacacccagcggaggggtaggagacatggtcagcacacacaccctc-cagggaaa-tactagctaccagtgatagg-atttgaggcaccgctcccaggtcagcagcataaaaacatcaagagagcagaga-ccaggaaggatttttgaaggggatttatttgaagagaaggaatggtgagtcccttccatcaacccaaggtagaggggtgggagggag-------------------------------c--------ctccatggggccaaatagagagcttgaca-tgtgtcccctgcagtgagacaggca------------------------ttgcagacaggtgcccagctcacctctgagaaagccaaag-ta-----------caa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124001520 413 + 133663169 TGAGAATGGTG--TC-AAGGAAGGTATAAGGATGGATGTGTTAAAACTTCAGCACCAAGCattggaagttgaggctgaggtgccaggacacagtggaagtgcacacccagcgga-gggcaggagacacggtctgcacacacattctctcaggggaatatctagctaccggtaatagg-atttgaggcaccactcccaggtcagcagcataaaaacatcgtgagagcagaga-ctaggaaggatttttgaaggggatttatttgaagagaaggaagggtgagtcccttccatcaacccaaggtggaggggtgggaaggag-------------------------------c--------ttccatggggccagatagagagcttgacg-tgtgtctcctgcagtgagacaggca------------------------ttgcagacaggtgctcagctcacccctgagaaggccaaag-ta-----------caa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128249621 413 + 137757926 TGAGAATGGTG--TC-AAGGAAGGTATAAGGATGGATGTGTTAAAACTTCAGCACCAAGCattggaagttgaggctgaggtgccaggacacagtggaagtgcacacccagcgga-gggtaggagacacggtctgcacacacattctctcaggggaatatctagctaccggtaatagg-atttgaggcaccactcccaggtcagcagcataaaaacatcgtgagagcagaga-ctaggaaggatttttgaaggggatttatttgaagagaaggaagggtgagtcccttccatcaacccaaggtggaggggtgggaaggag-------------------------------c--------ttccatggggccagatagagagcttgacg-tgtgtctcctgcagtgagacaggca------------------------ttgcagacaggtgctcagctcacccctgagaaggccaaag-ta-----------caa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10648207 413 - 16319837 TGAGAATGGTG--TC-AAGGAAGGTATAAGGACGGATGTGTTAAAACTTCAGCACTAAGCATTGGAAGTTGAGGCTGAGGTGCCAGGACACAGTGGAAGTGCACACCCAGCGGA-GGGCAGGAGACACGGTCTGCACATACATTCTCTCAGGGGAATATCTAGCTaccggtaatagg-atttgaggcaccactcccaggtcagcagcataaaaacatcgtgagagcagaga-ctaggaaggatttttgaaggggatttatttgaagagaaggaagggtgagtcccttccatcaacccaaggtggaggggtgggaaggag-------------------------------c--------ttccatggggccagatagagagcttgacg-tgtgtctcctgcagtgagacaggca------------------------ttgcagacaggtgctcagctcacccctgagaaggccaaag-ta-----------caa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12271871 413 + 20526591 TGAGAATGGTG--TC-AAGGAAGGTATAAGGATGGATGTATTAAAACTTCAGCACTAAGCATTGAAAGTTGAGGCTGAGGTGCCAGGACACAGTGGAAGTGCACACCCAGCGGA-GGGTAGGAGACACGGTCTGCACACACATTCTCTCAGGGGAATATCTAGCTACCGGTAATAGG-ATTTGAGGCACCACTCCCAGGTCAGCAGCATAAAAACATCGTGAGAGCAGAGA-CTAGGAAGGATTTTTGAAGGGAATTTATTTGAagagaaggaagggtgagtcccttccatcaagccaaggtggaggggtgggaaggag-------------------------------c--------ttccatgggaccagatagagagcttgacg-tgcgtcccctgcagtgagacaggca------------------------ttgcagacaggtgcccagctcacccctgagaaagccaaag-ta-----------caa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119243630 413 + 128539186 TGAGAATGGTG--TC-AAGGAAGGTATAAGGATGGATGTATTAAAACTTCAGCACTAAGCattggaagttgaggctgaggtgccaggacccagtggaagtgcacacccagcgga-gggtaggagacacggtctgcacacacattctctcaggggaatatctagctaccggtaatagg-atttggggcaccactcccaggtcagcagcataaaaacatcgtgagagcagaaa-ctaggaaggatttttgaaggggatttatttgaagagaaggaacggtgagtcccttccatcaacccaaggtggaggggtgggaaggag-------------------------------c--------ttccatggggccagatagagagcttgaca-tgtgtcccctgcagtgagacaggca------------------------ttgcagacaggtgcccagctcacccctgagaaggccaaag-ta-----------caa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 585729 413 + 6255621 TGAGAATGGTG--TC-AAGGAAGGTATAAGGATGGATGTGTTAAAACTTCAGCACTAAGCattgaaagttgaggctgaggtgccaggacacagtggaagtgcacacccagcgga-gggtaggaggcacggtctgcacacacattctctcaggggaatatctagctaccggtaatagg-atttagggcaccactcccaggtcagcagcataaaaacatcgtgagagcagaga-ccaggaaggatttttgaaggggatttatttgaagagaaggaagggtgagtcccttccatcaagccaaggtggaggggtgggaaggag-------------------------------c--------ttccatggggccagatagagagcttgacg-tgtgtcccctgcagtgagacaggca------------------------ttgcagacaggtgcccagctcacccctgagaaagccaaag-ta-----------caa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4621094 412 - 8658521 TGAGAATGGTG--TC-AAGGAAGGTATAAGGATGGATGTATTAAAACTTCAGCACTAAGCGTtggaagttgaggctgaggtgccaggacacagtggaagtgcatacccagcgga-ggggaggagacacggtcc-cacacacgttctctcaggggaatatctagctaccggtaatagg-atttggggcaccgctcccaggtcagcagcataaaaacatcgtgagagcagagg-ctaggaaggatttttgaaggggatttatttgaagagaaggaacagtgagtcccttccatcaacccaaggtggaggggtgggaaggag-------------------------------c--------ttccatggggccagatagagagcttgaca-tgtgtcccctgcagtgagacaggcg------------------------ttgcagacaggtgcccagctcacccctgagaaagccaaag-ta-----------caa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114821423 411 + 124281992 CGAGAATGGTG--TG-AAGGAAGGGATGAGGATGGGTGTGTTAACACTTCAGCACTAAGCGTTGGACGTGTGGGCTGAGGTGCCAGGCCACAGTGG-AATGCACACCCGGCAGA-GGGCAGGAGACACAGTCTGTACACGCATTCTC-CAGGGGAATATCCAGCTACCAGTGACATT-ATTTGGGGTACCGCTCCCAGGTCAGCAGCATAGAAACATCGTGAGAGCAGAGA-CTAGGAAGGATTTTTGAAGGTGATTTATTTGAAGAGAAGGAACTGTGAGTCCTTTGCATCAACACAAGGCGGAAAGgtgggagggag-------------------------------c--------ttccatgggaccaaacagggagcttgaca-catgtcccctgcagtgagcccggca------------------------ttgtggacagctgcccagcccacccctgagaaagccaaag-ta-----------caa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 466004 397 - 9212255 CGAGGATGGTG--TG-AAGGAAGGGGTAAGGATAGCTGTGTCAACACTTGAGCACTAAGCGTTGGACGTGTAGGCTGAGGTGCCAGGC---------------CACCCGGCAGA-GGGCAGAAGACACGATCTGCACACGCATTCTC-CAGGGGAATATCCAGCTACCAGTGACATG-ATTTGGGGTACCGCTcccaggtcagcagcatagaaacatcgtgagagcagaga-ctgggaaggatttttgaaggggatttacttgaagagaaggaactgtgagtcccttccatcaacccaaggcggaagggtgggagggag-------------------------------c--------ttccatgggaccaaacagggagcttgaca-cgtgtcccctgcagtgagcccggca------------------------tcgtggacaggtgcccagcccacccctgagaaagccaaag-ta-----------caa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2880413 395 + 4466143 CGAGAATGGTG--TG-AAGGAAGGGAT-AGGATGGCTGTATTAACACTTCAGCACTAAGCATTGGACGTGTAGGCTGAGGTGCCAGGC---------------CA-CCGGCAGA-GGGCAGGAGACACGATCTGCACACGCATTCTC-CAGGGGAATATCCAGCTACCAGTGACATG-ATTTCGGGTACCGCTCCCAGGTCAGCAGCATGGAAACATCGTGAGAGCAGAGA-CTGGGAAGGATTTTTGAAGGGGATTTATTTGAGGAGAAGGAACTATGAGTCCCTTCCATCAACCCAAGGCGGAAATgtgggagggag-------------------------------c--------ttccatgagaccaaacagggagcttgaca-catgtcccctgcagtgagcccggca------------------------ttgtggacaggtgcccagcccacccctgagaaagccaaag-ta-----------caa i cebCap1.NW_016107484v1 C 0 I 4525 s aotNan1.NW_018491581v1 1587506 411 + 5364348 CGAGAATGGTA--TG-AAGGAAGGGATAAGGATGGATGTATTAACACTTCAGCACTAAGCACTGGACGTGTAGGCTGAGGTGCCAGGCCACAGCGGAAATGCACGCCCGGCAGA-GGGCAGGAGA-ACGATCTGCACACGCGTTCTC-CAGGGGAATATCCAGCTACCAGTGACATG-ATTTGGGGTACCGCTcccaggtcagcagcatagaaacatcatgagagcagaga-ctgggaaggatttttgaaggggatttatttgaagagaaggaactgtgagtcccttccatcaacccaaggcagaagggtgggagggag-------------------------------c--------ttccatgggaccaaacggggagcttgaca-catgtcccctgcagtgagcccagca------------------------ttgtggacaggtgcccagctcacccctgagaaagccaaag-ta-----------caa i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4311012 415 + 7922563 AAAGTGTGGGG--CC-AACAAAAGTATAAGGATGAACGTTTTAAAATTTCGATTCTATGTGCTGGCAGTTTAGACCGAGCATCCAGGACAGTGTCTAAGTGCACACCACACTGAGCGGGAGCATAGATTGTCAGCAca--cattttc-aggggaaatatccaactatcagtcacatg-attatggacaccgctctcaggtcagcagcataaaaacattgtgagaggagagagttgggaggaatttttgaaaaagatttatttgaagagaagtatctgtgagtctccttattgacccctagg--gaagagtgggaagggg----------------------------------------tgccgtgggatcatgtggagagcttgacgttgtgtgccctgcagttagacc----------------------------ttatggacaggggcccagtttacc-ctgacaaaactaaag-TAGCCTATGGCCTCA- i otoGar3.GL873618 I 10 C 0 s canFam3.chr26 33163554 433 - 38964690 CCAAAGTGGGG--TTGAATGAAAGTATAAGGACAGTCGTAT-----------------GTGTCAGATGTCCGGACCAGGGC-CTGGAACAAGGCAGAAATGCTTACCAGCTTGTGCTCTAGGATAGGCCatcagcatatacgttttc-aagggaaatggccaatcaccagttacatgaattttgggcaccactcccaggtcagcagcataaaaatactgcgagagcatagagctggggag---ttttgaggtgggtttatttggagaggtgggactgtgagtccc--ccatcaacccaacgagggggtgcaaaatgggg-------------------------------ctatggggtttctacagaagtaaacggagagcttgc---tatgtcccctgcagtGAGCAAGGGATGCCTGCCTCACACCCAAGACAGGTGTCAGATAGATGCTCAGCTCCTTTCTGAGAAAGTGGAAA-TGGCCTATGACC-TAA i canFam3.chr26 I 1 I 28 s dasNov3.JH568189 846391 394 - 1116856 TGAAAAGTGTGGACC-AAAGCGGATATAAAGGTGGACATTTACACATTTCAGTG-GGATTGTGGGACATTTAGACAGAGACGCCAGGACAAAAC--AATTGTCTAGCAAGTTGGGTTGTAGGAGAGACCACCAATATATACATTTTC-AAGGGCTCTCTCCAATCCCC----------AT----------------------------------CATTGTGAGAGCAgagagtaaggaaggagttttgaatggaatttctttggagagaaacatctgtgagtttcc-ccatcaacccaagg--gagaaggaggcaggggtctgcctcaaaccttcagctgagtgacaggcc--------ttccgtgggaccatgca-agagtttga---cgtgtctcctgcagttaggCAGGTG------------------------CTCTGA--GGGGGCCTGACTCATCCCTAAATTGGCCTATGACA-----------TAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6725279 2162 - 9870158 I a score=1904964.000000 s hg38.chr12_KI270834v1_alt 78123 176 + 119498 aagGAATAATTTTT-------------------------ACACATTCATACATggctctgcctctt---tgctgtgtgacgtttagcaagtcatctaacctctctttgctccagtttcttcatttgtaaaatgtg---gataagaatt-gtctcggctgcat---------------------------------------------------------------cagggtct-----------------------------------tcatga-----------------------ggatcatatgagcct-ata--------------------------------------------------------------tgtgaag---------a---------actggg s panTro5.chr12 127364121 176 + 137163284 aagGAATAATTTTT-------------------------ACACATTCATACATggctctgcctctt---tgctgtgtgatgtttagcaagtcatctaacctctctgtgctccagtttcttcatttgtaaaatgtg---gataagaatt-gtctcggctgcat---------------------------------------------------------------cagggtct-----------------------------------tcatga-----------------------ggatcatatgagcct-ata--------------------------------------------------------------tgtgaag---------a---------actggg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125715164 176 + 135337776 aagGAATAATTTTT-------------------------ACACATTCATACATggctctgcctctt---tgctgtgtgatgtttagcaagtcatctaacctctctgtgctccagtttcttcatttgtaaaatgtg---gataagaatt-gtctcggctgcat---------------------------------------------------------------cagggtct-----------------------------------tcatga-----------------------ggatcatatgagcct-ata--------------------------------------------------------------tgtgaag---------a---------actggg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8228523 170 - 8369578 aagGAATAATTTTT-------------------------ACACATTCATACATggctctgcctc-t---tgctgtgtgacgtttagcaagtcatctaacctctctgtgctccagtttcttcatttgtaaaatgtg---gataagaatt------ggctgcat---------------------------------------------------------------cagggtct-----------------------------------tcatga-----------------------ggatcatatgagcct-ata--------------------------------------------------------------tgtgaag---------a---------actggg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97886770 176 + 106955855 aagGAATAATTTTT-------------------------GCACATTCATACAcagctctgcctctt---tgctgtgtgatgtttagcaagtcatctaacctctctgtgctccagtttcttcatttgtaaaatgtg---gataagaatt-gtctcggctgtat---------------------------------------------------------------cagggtct-----------------------------------tcatga-----------------------ggatcatatgagcct-ata--------------------------------------------------------------tgtgaag---------a---------actggg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124001933 176 + 133663169 aagGAATAATTTTT-------------------------ACACATTCATACATggctcttcctctt---tgctgtgcgacatttagcaagtcatctaacttctctgtgctccagtttcttcatttgtaaaatgtg---aataagaatt-gtctcggctgcat---------------------------------------------------------------cagtgtct-----------------------------------tcatga-----------------------ggatcatatcagcct-ata--------------------------------------------------------------tgtgaag---------a---------actggg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128250034 176 + 137757926 aagGAATAATTTTT-------------------------ACACATTCATACATggctcttcctctt---tgctgtgcgacatttagcaactcatctaacttctctgtgctccagtttcttcatttgtaaaatgtg---aataagaatt-gtctcggctgcat---------------------------------------------------------------cagtgtct-----------------------------------tcatga-----------------------ggatcatatcagcct-ata--------------------------------------------------------------tgtgaag---------a---------attggg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10648620 176 - 16319837 aagGAATAATTTTT-------------------------ACACATTCATACATggctcttcctctt---tgctgtgcgacatttagcaagtcatctaacttctctgtgctccagtttcttcatttgtaaaatgtg---aataagaatt-gtctcggctgcat---------------------------------------------------------------cagtgtct-----------------------------------tcatga-----------------------ggatcatatcagcct-ata--------------------------------------------------------------tgtgaag---------a---------actggg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12272284 176 + 20526591 aagGAATAATTTTT-------------------------ACACATTCATACATggctctgcctctt---tgctgtgcgacgtttagcaagtcatctaacttctctgtgctccagtttcttcatttgtaaaatgtg---aataagaatt-gtctcggctgcat---------------------------------------------------------------cagtgtct-----------------------------------tcatga-----------------------ggatcatatcagcct-ata--------------------------------------------------------------tgtgaag---------a---------actggg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119244043 176 + 128539186 aagGAATAATTTTT-------------------------ACACATTCATACATggctctgcctctt---tgctgtgcgacgtttagcaagtcatctaacttctctgtgctccagtttcttcatttgtaaaatgtg---aataagaatt-gtctcggctgcat---------------------------------------------------------------tagtgtct-----------------------------------tcatga-----------------------ggatcatatcagcct-ata--------------------------------------------------------------tgtgaag---------a---------actggg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 586142 176 + 6255621 aagGAATAATTTTT-------------------------ACACATTCATACAcggctctgcctctt---tgctgtgcgacgtttagcaagtcatctaacttctctgtgctccagtttcttcatttgtaaaatgtg---aataagaatt-gtctcagctgcat---------------------------------------------------------------cagtgtct-----------------------------------tcatga-----------------------ggatcatataagcct-ata--------------------------------------------------------------tgtgaag---------a---------actggg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4621506 176 - 8658521 aagGAATAATTTTT-------------------------ACACATTCATACAtggctcttcctctt---tgctgtgcgacatttagcgagtcatctaacttctctgtgctccagtttcttcgtttgtaaaatgtg---aataagaatt-gccttggctgcat---------------------------------------------------------------cagtgtct-----------------------------------tcatga-----------------------ggatcatataagcct-gta--------------------------------------------------------------tgtgaag---------a---------actggg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114821834 179 + 124281992 aagGAATGATTTTT-------------------------ATACATTaattcacggctctgcctctt---tgctgtgtggcatttggcaagtcattgaacctctctgtgctccagcttcttcatttgtaaaatgtggatgataagaatt-gtctcggctgcat---------------------------------------------------------------cagggtct-----------------------------------tcaaga-----------------------ggatcatatgagcct-tta--------------------------------------------------------------tgtgaag---------a---------actggg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 466401 176 - 9212255 aagGAATGATTTTT-------------------------ATACATTCATtcacggctctgcctctt---tgctgggtgacgtttggcaagtcattgaacctctctgtgctccagtttcttcat---taaaatacagatgataagaatt-gtcttggctgcat---------------------------------------------------------------cagggtct-----------------------------------tcatga-----------------------ggatcatatgagccc-cta--------------------------------------------------------------tgtgaag---------a---------actggg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2885333 179 + 4466143 AAGGAATGATTTTT-------------------------ATACACTCATtcaccgctctgcctctt---tgctgtgtgacgtttggcaagtcattgaacctctctgtgctccagtttctttatttgtaaaatgcagatgataagaatt-gtcttgtctgcat---------------------------------------------------------------cagggtct-----------------------------------tcatgt-----------------------ggatcatatgagccc-cta--------------------------------------------------------------tgtaaag---------a---------actggg i cebCap1.NW_016107484v1 I 4525 C 0 s aotNan1.NW_018491581v1 1587917 179 + 5364348 aagGAATGATTTTT-------------------------ATACATTCATTCACCgctctgcctctt---tgctgtgtgacgtttggcaagtcattgaacctctctgtgctccagtttcttcatttgtaaaattcagatgataagaatt-gtctcggctgcat---------------------------------------------------------------cagggtct-----------------------------------tcatga-----------------------ggatcatatgagccc-cta--------------------------------------------------------------tgtgaag---------a---------actggg i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4311427 376 + 7922563 AAGGAGTAAATTTTTAAAAGGTCATTATCAGAACAGGTAACACATTCATGCATGGCTC-----------Tgttgtgtgacctttggcaagtcatctaaact-tccgtgctttagtttcttcatttgtaaaatttg---gatGGCCGTTTGTCTCTACCATGTCAAGTTTCTTCCTTTTTCTTTCTTTCtttcttttttttttttttttttttttttggtaagaggcagagtcttgttctgtcatccaggctggagtgcaatgaagtgatcataactcactataaccttgaactcctgggctcaagtgatcct-ctaagcctgccaggtagctgggactataggcacatgctaccatgcctggctaattttgaaatttttgtgtag---------a---------gatggg i otoGar3.GL873618 C 0 I 119 s canFam3.chr26 33164015 205 - 38964690 aaaaaaaaatttta-----aGTAACTATTGGAATAG---ATATGCTCATGCATggctctgtctcttatgggctgtgtgacttttggcaagtcacctagcctctctgtgctgcagtttcttaatttgtaacatgtg---gatgataact-gtccccatggcat---------------------------------------------------------------cagggcga-----------------------------------tgtaga-----------------------ggatcgactgaacta-tta--------------------------------------------------------------tatgaag---------agttctcaggattggg i canFam3.chr26 I 28 C 0 s dasNov3.JH568189 846785 193 - 1116856 AGGGAGCAATGTTTTAAAATGTGATTATTTGACCAGGTAAAATATCCATATGtgcctctgacc------agctgtgtgaccttcagcaagtcatttaacctctctgtgct--------------tgtaaaatgtg---gaaaacaatt-gtcccccctgtgt---------------------------------------------------------------cagggtcc-----------------------------------ttctaa-----------------------ggatgaaatgagcctgata--------------------------------------------------------------tatgaaggattcttgaa---------actag- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6725279 2162 - 9870158 I a score=10616628.000000 s hg38.chr12_KI270834v1_alt 78299 957 + 119498 ctgggcacatgg-------------------------tcaga----------gccatgtaagcattagctgtgattATGGCTCCAGCATCCAAAAGGTATGCTGGGAAAAGCCCACGGCCACTGTGTCCTCTATCAGCTG--TGGTCACCTTCCCACACTGCAACAGGTAGTATGGGTATATCATTTCTCATATACACTTCCTGAGGATTTTCATGCA---------TGACCAAGGCAAC-CAGGT-ACACAAGGGTCTCTTCTCTTCCTGACTTCAGGTTCTGAGGGT--TTGGAGAGCAGGGGATGCCTGCAAatccttttt-tcct-t-cttttatatacaaat-------tataacaccctatgcatatcttt--ctgcatct----tttctgctta-----gcagtatattttggagagc--ttttgcatgttgatgtatgatgaacttccccgatattttagaacattcct-tcacattccattgtgtggctgtgccgtaatttatttaacaaggccttactgatgagtttgttaaataaattga-ttgtgtctccagtcttttgcctttacaaacagcgtggcaaagaataaatctgaccatagttcattgtgcacgtgggcgagtccacctg--caggatacatttctggaagtggaattgctgggtcccagggtgtaggcatttatagtgttcatagctgttgc---ctaatccc-----cgccgtggggatggaacctatttatcctc-accaacaatccaaa-cgagtagtacctgctttttcctagacttaccaacagggggcgcgatcacatgttgggatttttgca-tattttgtagat---gagtggtacttgtgtagttttaatttgcatttctcttagtgtgagtgaagctggcc-ttttttttttttcctatga-gaaaagtgtgtctaagagttatgtgtatttccttttctgtga----------a----------ct-------tggtttgc----gtatct----attgggtcgtgg----ttattgttgctttttatt-tcaaaaccatttccaggggc--tttttata s panTro5.chr12 127364297 958 + 137163284 ctgggcacatgg-------------------------tcaga----------gccatgaaagcattagctgtgattATGGCTCCAGCATCCAAAAGGTATGCTGGGAAAAGCCCACGGCCACTGTGTCCTCTATCAGCTG--TGGTCACCTTCCCACACTGCAACAGGTAGTATGGGTATATCATTTCTCATATACACTTCCTGAGGATTTTCATGCA---------TGACCAAGGCAAC-CAGGT-ACACAAGGGTCTCTTCTCTTCCTGACTTCAGGTTCTGAGGGT--TTGGAGAGCAAGGGATACCTGCAAatccttttt-tcct-t-cttttatatacaaat-------tataacaccctatgcatatcttt--ctgcatct----tttctgctta-----gcaatatattttggagagc--ttttgcatgttgatgtatgatgaacttccctgatattttagaacattcct-tcacattccattatgtggctgtgccataatttacttaacaagcccttactgatgagtttgttaaataaattga-ttgtatctccagtcttttgcctttacaaacagcgtggcaaagaataaatctgaccatagttcattgtgcacctgggcgagtccacctg--caggatacatttctggaagtggaattgctgggtcccagggtgtaggcatttatagtgttcatagctgttgc---ctaatccc-----cgccgtggggatggaacctatttatcctc-accaacaatccaaa-tgagtagtacctgctttttcctagactcaccaacagggggcgcgatcacatgttgggatttttgca-tattttgtagatgaggagtggtacttgtgtagttttaatttgcatttctcttagtgtgagtgaggctggcc---ttttttttttcctatgc-gaaaagtgtgtctaagagttatgtgtatttcctcttctgtga----------a----------ct-------tggtttgc----gtatct----attgggtcgtgg----ttattgttgctttttatt-tcaaaaccatttacaggggc--tttttata i panTro5.chr12 C 0 C 0 s panPan2.chr12 125715340 957 + 135337776 ctgggcacatgg-------------------------tcaga----------gccatgaaagcattagctgtgattATGGCTCCAGCATCCAAAAGGTATGCTGGGAAAAGCCCACGGCCACTGTGTCCTCTATCAGCTG--TGGTCACCTTCCCACACTGCAACAGGTAGTATGGGTATATCATTTCTCATATACACTTCCTGAGGATTTTCATGCA---------TGACCAAGGCAAC-CAGGT-ACACAAGGGTCTCTTCTCTTCCTGACTTCAGGTTCTGAGGGT--TTGGAGAGCAAGGGATACCTGCAAatccttttt-tcct-t-cttttatatacaaat-------tataacaccctatgcatatcttt--ctgcatct----tttctgctta-----gcaatatgttttggagagc--ttttgcatgttgatgtatgatgaacttccctgatattttagaacattcct-tcacattccattatgtggctgtgccataatttacttaacaagcccttactgatgagtttgttaaataaattga-ttgtgtctccagtcttttgcctttacaaacagcgtggcaaagaataaatctgaccatagttcattgtgcacctgggcgagtccacctg--caggatacatttctataagtggaattgctgggtcccagggtgtaggcatttatagtgttcatagctgttgc---ctaatccc-----cgccgtggggatggaacctatttatcctc-accaacaatccaaa-tgagtagtacctgctttttcctagactcaccaacagggggcgcgatcacatgttgggatttttgca-tattttgtagatgaggagtggtacttgtgtagttttaatttgcatttctcttagtgtgagtgaggctggcc----tttttttttcctatgc-gaaaagtgtgtctaagagttatgtgtatttccttttctgtga----------a----------ct-------tggtttgc----gtatct----attgggtcgtgg----ttattgttgctttttatt-tcaaaaccatttacaggggc--tttttata i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8228693 963 - 8369578 ctgggcacatgg-------------------------tcaga----------gccatgtaagcattagctgtgattATGGCTCTAACATCCAAAAGGTATGCTGGGAAAAGCCCATGGCCACTGTGTCCTCTATCAGCTG--TGGTCACCTTCCCACACTGCAACAGGTAGTATGGGTATATCATTTCTCATATACACTTCCTGAGGATTTTCATGCA---------TGACCAAGGCAAC-CAGGT-ACACAAGGGTCTCTTCTCTTCCTGACTTCAGGTTCTGAGGGT--TTGGAGAGCAAGGGATACCTGCAAatccttttt-tcct-t-cttttatatacaaat-------tataacaccctatgcatatcttt--ctgcatct----tttctgctta-----gcagtatattttggagagcttttttgcatgttgatgtatgatgaacttccctgatattttagaacattcct-tcacattccattatgtggctgtgccataatttatttaacaagcccttactgatgagtttgttaaataaattgatttgtgtctccagtcttttgcctttacaaacagcgtggcaaagaat-aatctgaccatagttcattgtgcacctgggcgagtccacctg--caggatacatttctggaagtggaattgctgggtcccagggtgtaggcatttatagtgttcgtagctgttgc---ctaatccc-----cgccgtggggatggaacctatttatcctc-accaacaatccaaa-tgagtagtacctgctttttcctagactcaccaacagggggcgcgatcacatgttgggatttttgca-tattttgtagatgaggagtggtacttgtgtagttttaatttgcatttctcttagtgtgagtgaggctggcctttttttttttttcctatgt-gaaaagtgtgtctaagagttatgtgtatttccttttctgtga----------a----------ct-------tggtttgc----gtattt----attgggtcgtgg----ttattgttgctttttatt-tcaaaaccatttccaggggc--tttttata i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97886946 957 + 106955855 ctgggcacatgg-------------------------tcaga----------gccatgtaagcattagccgtgattATGGCTCCAACACCCAAAAGGTATGCTGGGAAAAGCCCACGGCCACTGTGTCCTCCATCAGCTG--TGGTCACCTTCCCACACTGCAACAGGTAGTATGGGTATATCATTTCTCATATACACATCCTGAGGATTTTCATGCA---------TGACCAAGGCAAC-CAGGT-ACACAAGAGTCTCTTCTGTTCCTGACTTCAGGTTCTGAGGGT--TTGGAGAGCAAGGGATACCTGCAAatccttttt-tcct-t-cttttatatacaaat-------tgtaacaccctatgcatatcttt--ctgcatct----tttctgctta-----gcaatatattttggagagc--ttttgcacgttgatacatgatgaacttccctgatattttagaacattcct-tcacatcccattgtgtggctgtgccataatttatttaacaagcccttactgattagtttgttaaataaattga-tcatgtctccagtcttttgcctttacaaacagcgtggcaaagaataaatctgaccatagttcattgtgcacctgggcgagtccacctg--caggatacatttctggaagtggaattgctgggtccca-ggtgtaggcatttataatgttcatagctgttgc---ctaatccc-----cgccatggggatggaacctatttatcctc-accaacaatccaaa-tgagtagtacctgctttttcctagactcaccaacagggggcgcgatcacatgtttggatttttacattattttgtagatgaagagtggtacttgtgtagttttaatttgcatt--tcttagcgtgagtgaggctggcc--tatttttttttcctatgt-gaaaaatgtgtctaagagttatgtgtatttcgttttctgtga----------a----------ct-------tggtttgc----ttatct----attgggtcatgg----ttattgttgctttttatt-tcaaaaccatttctaggggc--tttttata i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124002109 954 + 133663169 ctgggcacatgg-------------------------tcaga----------gccgtgtaagcattagccgtgattATGGCTCCAGCATCCAAAAGGTATGCTGGGAAAAGCCCACGGCCACCGTGTCCTCTATCAGCTC--CGGTCACCTTCCCACGCTGCAACAGGTAGTGTGGGCGTATCATTTCTCGTATACACATCTCGAGGATTTTCATACA---------TGACCAAGGCAAC-CAGGC-ACACAAGGGTCTCTTCTGTTCCTGACTCCAGGTTCTGAGGGT--TTGGAGACCAAGAGATACCTGCAAatcctttta-tcct-t-cttgtatatacaaac-------tgtaacaccctatgcatgtcttt--ctgcatct----tttctgctta-----gcaatatattttggagatc--ttttgcatgttgatatatgatgaacttccctgatattttagaacattcct-ccacattccattgtgtggctgtgccataatttatttaacaagcccttactgatgagtttgttaaataagttga-ttgtgtctccagtcttttgcgtttacaaatagcgtggcaaagaataaacctgagcatagttaattgtgcacctgggacagtccacctg--caggatacatttctggaagtggaattgctgggtcctggggtgtaggcatttataatgttcatagctgttgc---ccagtccc-----agccatggggatggaacctatttatcctc-accaacaatccaaa-tgagcagtacctgctttttcctagactcaccaacagggggagcaatcac--gtttggattttt-ca-catgttgtagatgaagagtggtatttgtgtagtttcaatctgcatttctcttagtgtgagtgaagctggcc-----ttttttttcctatgt-gaaaaatgtgtctaagagttatgtgtatttccttttctgtga----------a----------ct-------tggtttgc----ttatct----tttgggccatgg----ttattgttgctttttgtt-tcaaaaccatttccaggggc-ttttttata i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128250210 954 + 137757926 ctgggcacatgg-------------------------tcaga----------gccgtgtaagcattagccgtgattATGGCTCCAGCATCCAAAAGGTATGCTGGGAAAAGCCCACGGCCACCGTGTCCTCTATCAGCTC--CGGTCACCTTCCCACGCTGCAACAGGTAGTGTGGGCATATCATTTCTCGTATACACATCCCGAGGATTTCCATGCA---------TGACCAAGGCAAC-CAGGC-ACACAAGGGTCTCTTCTGTTCCTGACTCCAGGTTCTGAGGGT--TTGGAGACCAAGAGATACCTGCAAatcctttta-tcct-t-cttgtatatacaaac-------tgtaacaccctatgcatgtcttt--ctgcatct----tttctgctta-----gcaatatatgttggagatc--ttttgcatgttgatatatgatgaacttccctgatattttagaacattcct-ccacattccattgtgtggctgtgccataatttatttaacaagcccttactgatgagtttgttaaataagttga-ttgtgtctccagtcttttgcgtttacaaatagcgtggcaaagaataaacctgagcatagttaattgtgcacctgggacagtccacctg--caggatacatttctggaagtggaattgctgggtcctggggtgtaggcatttataatgttcatagctgttgc---ccagtccc-----agccatggggatggaacctatttatcctc-accaacaatccaaa-tgagcagtacctgctttttcctagactcaccaacagggggagcaatcac--gtttggattttt-ca-catgttgtagatgaagagtggtatttgtgtagtttcaatctgcatttctcttagtgtgagtgaagctggcc-----ttttttttcctatgt-gaaaaatatgtctaagagttatgtgtatttccttttctgtga----------a----------ct-------tggtttgc----ttatct----tttgggccatgg----ttattgttgctttttgtt-tcaaaaccatttccaggggc-ttttttata i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10648796 954 - 16319837 ctgggcacatgg-------------------------tcaga----------gccgtgtaagcattagccgtgattATGGCTCCAGCATCCAAAAGGTATGCTGGGAAAAGCCCACGGCCACCGTGTCCTCTCTCAGCTC--TGGTCACCTTCCCACGCTGCAACACGTAGTGTGGGTATATCATTTCTCGTATACACATCCCGAGGATTTTCATGCA---------TGACCAAGGCAAC-CAGGT-ACACAAGGGTCTCTTCTGTTCCTGACTTCAGGTTCTGAGGGT--TTGGAGagcaagagatacctgcaaatccttttg-tcct-t-cttttatatacaaac-------tgtaacaccctatgcatatcttt--ctgcatct----tttctgctta-----gcaatatattttggagatc--ttttgcatgttgatatatgatgaacttccctgatattttagaacattcct-ccacattccattgtgtggctgtgccataatttatttaacaagcccttactgatgagtttgttaaataagttga-ttgtgtctccagtcttttgcgtttacaaatagcgtggcaaagaataaacctgagcatagttaattgtgcacctgggacagtccacctg--caggatacatttctggaagtggaattgctgggtcctggggtgtaggcatttataatgttcatagctgttgc---ccagtccc-----agccatggggatggaacctatttatcctc-accaacaatccaaa-tgagcagtacctgctttttcctagactcaccaacagggggagcaatcac--gtttggattttt-ca-catgttgtagatgaagagtggtatttgtgtagtttcaatctgcatttctcttagtgtgagtgaagctggcc-----ttttttttcctatgt-gaaaaatgtgtctaagagttatgtgtatttccttttctgtga----------a----------ct-------tggtttgc----ttatct----tttgggccatgg----ttattgttgctttttgtt-tcaaaaccatttccaggggc-ttttttata i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12272460 955 + 20526591 ctgggcacatgg-------------------------tcaga----------gccgtgtaagcattagccgtgattATGGCTCCAGCATCCAAAAGGTATGCTGGGAAAAGCCCACGGCCACTGTGTCCTCTATCAGCTC--TGGTCACCTTCCCACGCTGCAACAGGTAGTGTAGGTATATCATTTCTCGTATACACATCCCGAGGATTTTCATGCA---------TGACCAAGGCAAC-CAGGT-ACACAAGGGTCTCTTCTGTTCCTGACTTCAGGTTCTGAGGGT--TTGGAGagcaagatatacctgcaaatcctttta-tcct-t-cttttatatacaaac-------tgtaagaccctatgcatatcttt--ctgcatct----tttctgctta-----gcaatatattttggagatc--ttttgcgtgttgatatatgatgaacttccctgatattttagaacattcct-ccacattccattgtgtggctgtgccataatttatttaacaagcccttactgatgagtttgttaaataagttga-ttatgtctccagtcttttgcgtttacaaatagcgtggcaaagaataaacctgagcatagttaattgtgcacctgggagagtccacctg--caggatacatttctggaagtggaattgctgggttccggggtgtaggcatttataatgttcatagctgttgc---ctagtccc-----agccatgggaatggaacctatttatcctc-accaacaatccaag-tgagcagtacctgctttttcctagactcaccaacagggggagcgatcac--atttggattttt-ca-catgttgtagatgaaaagtggtatttgtgtagtttcaatttgcatttctcttaatgtgagtgaggctggcc----tttttttttcctatgt-gaaaaatgtgtctacgagttatgtgtatttccttttctgtga----------a----------ct-------tggtttgc----ttatct----gttgggctgtgg----ttattgttgctttttgtt-tcaaaaccatttccaggggc-ttttttata i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119244219 955 + 128539186 ctgggcacatgg-------------------------tcaga----------gccatgtaagcattagccgtgattATGGCTCCAACATCCAAAAGGCATGCTGGGAAAAGCCCATGGCCACTGTGTCCTCTATCAGCTC--TGGTCACCTTCCCACGCTGCAACAGGTAGTGTGGGTATATCATTTCTCGTATACCCATCCCGAGGATTTTCATGCA---------TGACCAAGGCAGT-CAGGT-ACACAAGGGTCTCTTCTGTTCCTGACTTCAGGTTCTGAGGGT--TTGGAGagcaagagatacctgcaaatcctttta-tcct-t-cttttatatacaaac-------tgtaacaccctatgcatatcttt--ctgcatct----tttctgctta-----gcaatatattttggagatc--ttttgcatgttgatatatgatgaacttccctgatattttagaacattcct-ccacattccattgtgtggctgtgccataatttatttaacaagcccttactgatgagtttgttaaataagttga-ttgcgtctccagtcttttgcgtttacaaatagcgtggcaaagaataaacctgagcatagttaattgtgtacctgggagagtccacctg--caggatacatttctggaagtggaattgctgggtcccggggtgtaggcatttataatgttcatagctgttgc---ctagtccc-----agccatggggatggaacctatttatcctc-accaacaatccaag-tgagcagtacctgctttttcctagactcaccaacagggggagcgatcac--atttggattttt-ta-catgttgtagatgaagagtggtatttgtgtagtttcaatttgcatttctcttagtgtgagtgaggctggcc-----tttttttgcctatgt-gaaaaatatgtctaagagttatgtgtatttccttttctgtga----------a----------ct-------tggtttgc----ttatct----gttgggccgtgg----ctattgttgctttttgtt-tcaaaaccatttccaggggctttttttata i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 586318 955 + 6255621 ctgggcacatgg-------------------------tcaga----------gctgtgtaagcattagccgtgattATGGCTCCAGCATCCAAAAGGTATGCTGGGAAAAGCCCACGGCCACTGTGTCCTCTATCAGCTC--TGGTCACCTTCCCACGCTGCAACAGGTAGTGTGGGTATATCATTTCTCGTATACACATCCCGAGGATTTTCATGCA---------TGACCAAGGCAAC-CAGGT-ACACAAGGGTCTCTTCTGTTCCTGACTTCAGGTTCTGAGGGT--TTGGAGagcaagatatacctgcaaatcctttta-tcct-t-cttttatatacaaac-------tgtaacaccctatgcgtatcttt--ctgcatct----tttctgctta-----gcagtatattttggagatc--ttttgcgtgttgatatatgatgaacttccctgatattttagaacattcct-ccacattccattgtgtggctgtgccataatttatttaacaagcccttactgatgagtttgttaaataagttga-ttgtgtctccagtcttttgcgtttacaaatagcgtggcaaagaataaacctgagcatagttaattgtgcacctgggagagtccacctg--caggatacatttctggaagtggaattgctgggtcccggggtgtaggcatttataatgttcatagctgttgc---ctagtcct-----agccatgggaatggaacctatttatcctc-accaacaatccaag-tgagcggtacctgctttttcctagactcaccaacagggggagcgatcac--atttggattttt-ca-catgttgtagatgaaaagtggtatttgtgtagcttcaatttgcatttctcttagtgtgagtgaggctggcc----tttttttttcctatgt-gaaaaatgtgtctaagagttatgtgtatttccttttctgtga----------a----------ct-------tggtttgc----ttatct----gttgggccgtgg----ttattgttgctttttgtt-tcaaaaccatttccgggggc-ttttttata i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4621682 954 - 8658521 ctgggcacatgg-------------------------tcagg----------gccatgtaagcattagccgtgattatGGCTCCAACATCCAAAAGGTATGCTGGGAAAAGCCCACAGCCACTGTGTCCTCTGTCAGCTC--TGGTCACCTTCCCACGCTGCAACAGGTAGTGTGGGTGTATCATTTCTCGTATACACATCCCGAGGATTTTCATGCA---------TGACCAAGGCAAC-CAGGT-ACACAAGGGTCTCTTCTGTCCCTGACTTCAGGTTCTGAGTGT--TTGGAGAGCAAGGGATACCTGCAAatcctttta-tcct-t-cttttatatacaaac-------tctaacaccctctgcatatcttt--ctgcatct----tttctgctta-----gcaatatactttggagatc--ttttgcatgttgatatgtgatgaacttccctgatattttagaacattcct-ccacattcccttgtgtggctgtgccataatttatttaacaagcccttactgatgagtttgttgaataagttga-ttgtgtctccagtcttttgcgtttacaaatagcgtggcaaagaataaacctgagcatagttaattgtgcacctgggagagtccacctg--cgggatacatttctggaagtggaattgctgggtcccagggtataggcatttataatgttcatagctgttgc---ccagtccc-----agccgtggggatggaacctatttatcctc-accgacaatccaagttgagcagtacctgctttttcctagactcaccaacagggggagcgatcac--gtttggattttt-ca-catgttgtagatgaagagtggtatttgtgtagtttcaatttgcatttctcttagtgtgagtgacgctggcc-----ttttttttcctatgt-gaaaaatgtgtctaagagttatgtgtatttccttttctgtga----------a----------ct-------tggtttgc----ttatct----gttgggccgtgg-----tattgttgcttttt-tt-tcaaaaccatttccaggggctttttttatg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114822013 937 + 124281992 ctgggcatatgg-------------------------tcaga----------gccatgtaagcatcagccatgattATGGCTCCAATATCTAAAAAGCATGCTGGGAGAAGCTCACAGCCACTGTGTCCCCCGTCAGCCT--TGGCCACATTCGCAGGCCGCAGCAGGTAGTGCGGGTCCATCATTTCTCATGTACACATCCCAAGGATGTTCATGCATGACCAAGGTGACCAAGGTGAC-CAGGG-ACACAAGGGTCTCTTCTGTTCCTGACTTCAGGTTCTGAGGGT--TTGGAGAGCAA-GGATGCCTGCAAATCCttct--tcct-t-cttctgtctacacat-------ggtaacaccctgtgcatattttt---tgcatcg----tttctgctta-----gcaatgtattttggatgtc--ttttgcatgttgatatatgatgcgcttgcctgatactttagaacattctc-tcagattccattgtgtggctgtgccataatttatttaacaagcccttaccgatgagcttgttaaataaactga-tcgtgtctctagtcttttgcctttacaaacaacatggcaaagaataaacctgaccgtacttcattgtgcacctgggcgagtccacc-------------------------gagttgctgggtcccagggcgaagacatttatattgttcacagctgctgc---ctgatccc-----ctctgtgggaac-aaacctgtttat-ccc-accaacaatcctaa-tgagtagtacctgctttttcctaggctcgccaacagggggcg-gatcacatgttcggatttttgca-tattttttagatgaggagtggtatttgtgtagttttaatttgcatttctcttagtgtgagtgaggctggcc----tttttttcccatatgt-gaaaaatgtgtctaagagttatgtgtatttgcttttctttga----------a----------ct-------tggtttgc----ttatct----gttggatcatgg----ctattgctgttatttatt-tcaaatccatttccaggggc--ttttgata i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 466577 941 - 9212255 ctgggcatatgg-------------------------tcata----------gccatgtaagcatcagccatgattATGGCTTCAATATCCAAAAAGTATGCTGGGAGAAGCCCACGGCCACTGTGTCCCCCGTCAGCCT--TGGCCACCTTCCCAGGCCGCAGCAGGTGGTACGGGTACATCGTTTCTCATGTACACGTCCCGAGGATGTTCATGCA---------CGACCAAGGCGAC-CAGGT-ACACAAGGGTCTCTTCTGTTCCTGACTTCAGGTTCTGAGGGT--TTGGAGAGCAAGGGATACCTGCAAATCCTttt--tcct-t-cttatatatacacat-------ggtaacactctatgcgtatttttttctgcatct----tttctgctta-----gcaacgtattttggatgtc--ttttgcatgttgatatatgatgcacttgcctgatattttagaacattctc-tcagattccattgtgtggctgtgccataatttatttaacaagcccttagcaatgagcttgttaaataaactga-ccgtgtctctagtcttttgcctttacaaacagcgtggcaaagaatcaacctgaccatacttgattgtgcacctgggcgagtccatctg--cagggtacatttctggaagtggaattgctgggtcccagggcgtaggcatttatactgttcatagctgttgc---ctgatccc-----ctctgtggggatggaacctatttatcccc-accaacagtcctaa-tgagtagtacctgctttttcctagactcaccaacagggggag-gatcacatgtttgggtttctgca-tatt-----------------tatttgtgtagttttaatttgcatttctcttagtatgagtgaggctggcc---tttttttttccatatgt-gaaaaatgtgtctaagagttatgtgtttttgcttttctttga----------a----------ct-------tggtttgc----ttatct----gttgggtcgtgg----ctattgctgctttttatt-tcaaatccatttccaggggc--ttttgata i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2885512 943 + 4466143 ctaggcatatgg-------------------------tcagA----------GATATGTAAGAATCAGCCATGATTATGGCTTTAATATCCAAAAAGTATGCTGGGAGAAGCCCACGGCCACTGTGTCCCCCGTCAGCCT--TGGCCACCTTCCCAGACTGCCCTGGGTGGTACGGGTACATCGTTTCTCATGTACACATCCCGAGGATGTTCATGCA---------TGACCAAGGCGAC-CAGGC-ACACAGGGGTCTCTTCTGTTCCTGACTTCAGGTTCTGAGGGT--TTGGAGAGCAAGGGATACCTGCAAATCCTttt--tcct-t-cttatatatacacat-------ggtaacaccctac-cgtattttt--ctgcatct----tttctgctta-----gcaatgtattttggatgtc--ttttgcatgttgatatatgatgcacttgcctgatattttagaacattctc-tcagattccattgtgtggctgtgccataatttatttaacaagcccttactgatgagcttgttaaataaactga-ccgtgtctctagtcttttgcctttacaaacagcgtggcaaagaataaacctgaccatacttcattgtgcacctgggcaagtccacctg--cagggtacatttccggatgtggaattgctgggtcccagggcgtaggcatttatactgctcatagctgttgc---ctgatccc-----ctccatggagttggaaactgtttatcccc-accaacaatcctaa-tgagtagtgcctgctttttcctagactcaccaacagggggcg-gatcacatgtttggatttttgca-tatttttaagatgaagagtggtatttgtgtagttttaatttgcatttctcttagtatgagtgaggctggccttctttttttttccatatgt-gaaaa---------------atgtgtatttgcttttctttga----------a----------ct-------tggtttgc----ttatct----gttgggtcgtgg----ctattgctgctttttatt-tcaaatccatttccaggggc--ttttgata i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1588096 951 + 5364348 ctgggcatatgg-------------------------tcaga----------gccatgtaagcatcagccatgattATGGCTCCAATATCCAAAAAGTATGCTGGGAGAAGCCGGCGGCCACTGTGTCCCCCGTCAGCCT--TGGCCGCCTTCCCAGGCCGCAGCAGGTATTACGGGTACGTCGTTTCTCTGGTACACATCCCGAGGGTGTTCACGCA---------TGACCAAGGCGAC-CGGGC-ACACAAGGGTCTCTTCTGTTCCTGGCTTCAGGTTCTGAGGGT--TTGGAGAGCAAGGGATACCTGCAattcctttt--tcct-t-cttatatatacacat-------ggtaacacccgacgtgtgctttt--ctgcatcg----tttctgctta-----gcaatgtattttggatgtc--ttttgtat-ttgatatatgacgcacttgcctgacattttagaacgttctc-tcagattccattgtgtggctgtgctgtaatttatttaaccagcccttaccaatgagcttgttaaataaactga-tcgcgtctctagtcttttgcctttacaaacagcgtggcaaaggataaacctgaccatgcttcattgtgcacctgggcgagtccacctg--cagggtacatttctggaagtggaattgctgggtcccagggcgtaggcatttatactgttcatagctgttgc---ttaatccc-----ctccacgggggtggaacctgtttatcccc-accaccaatcc----tgagtagtacctgctttttcctagactcaccaacagggggcg-ggtcacatgtttggatttttgca-tagtttttagatgaagagtggtatttgtgtagttttaatttgcatttctcttagtgtgagtgaggctggcc----ttttttttccatatgt-gaaaaatgtgtctaagagttaggtgtgtttgcttttcttcga----------a----------ct-------tggtttgc----ttatct----gttgggtcacgg----ctattgctgctttttatt-tcaaatccatttccaggggc--ttttgatg i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4311922 978 + 7922563 CTGGACATCAGGATCTTTATTAGGATCTGAAAAGCTCTCAGAGCGGTGCTAGGCTATGCAAACGTTAGCTGTTACCATGGTTCTACCATCAAAAAGGCATACCTGGA-AAGCCCCCTTCCATCATGTTCCCC--CGGTTC--TGTTCACCTCTCTGCTCTACAGCAGGTAACCGCCACCATTTGTTTCTCACAGATCTGTCCAGAGAGTTTTTGTGCA---------AGATCAAGGTAAC-TGGCT-ACACATGGGTCTCTTCAGTTCCTGACTTT----------GGT--TCAGAaagcaagggatacctgtagatcctcttt-gcctgc-cttttatgtagaaat-------gataacaa-ctacccatatgttt---tgcatct----tttctgctta-------aagctattctaaagcta--ttttgcatgtcaatatgtgattaacttccccagtattttaaaagagccccatcacatcccactgtgtggctgtgctgtgatttatttaactatccc-tactgaggacct------------tta-gcttgtttccagtctttcagctttgcaa----tgtggcaaagaattaactttatcgtgcttcattatgcagttgggcaaggctatccaactgggatacatttctgaaagtaggactgctgggtctgagggagtgtgcatttagaatgtccatagctgctgc---ctaatcccctctactccgtgaggatggagccaacttacactc-acccccaacccaaa-tgtgtagtacctgccttttcagagcctcaccaacagagggcgctatccaacacttggcttttcgct-caccttgctgctgaagagcgttgttagtgcaattttaatttgcatttctctta---tgagtgaggctagcc------tttttttcatatatggaaaaatgtgtatcatagtcacgtatatttcctcttcggtaa----------actgtttagtgct-------ttgtcagt----ttatat----gttgggttgctgttatttattgttgctttTTCCCACCTTATCCATTTCCAGGGGC--TTTTTATA i otoGar3.GL873618 I 119 C 0 s canFam3.chr26 33164220 952 - 38964690 ttgaccatgcag-------------------------tcagt----------gccaagtaaGCATGAACTAGAATCATGGTTCCAACATAAAAAAGACATTT----GAAAGCCC----CTCCCACAAGCCCCATCAGCTT--AGTACCCCTCCCCCCAC-ACAACAGATATCCATTGCCTTTCAGTTCTCATGTATCCATCCAGAGAGTTTTTATGCA---------AGATCAAGGCAAC-CAGGTAATACATGTGTCTCTTGAGTTCCCAACTTTAGACTCTGAAGTTAGTAGTAGAACAAGGGATACCTGAGTATTCTTttt-tctt-c-cttttttttttgtgtgtgtgtgtgtaaatgtctgcacacattttc--ctatatct----tggcttctccagtgtacaatgcattttggagatc--ttttgcatgttgccataggatgaacttcctcaatatttcaaaaaagccca-tcatatttcacagtgtggttgtgccattatctatttaaccagcccc--------agttta----------tga-atctcttgccagtcttttgcctttatgacttgcatggcaaagaataatcctgactatacttaattctgcaactgggtgagtccactgg--aagggcacacttccacagatggaattgctgagctcagggatgtgtgcgtttataatgtctacagctactactatttaatgct-----ctccctgagggtggaaccagtttatcttctacttacaatccatg-tgatt--tgcctgctttttcatagcctcaccaacagagaacattattatacatttgaatttttgct-cattttgtagatgaaaaatagta-ttgtgtagttttaatgtgcatttc-cctattgcaagtcaggttggcc------tttatttcatatgt-gaaaaatgtgtgtaaaggttgtgtgtatttccttttctgtga----------a----------ctgttcatatgctttgcccatttatct----gttgaattatta----ttattgct--tttttcct-ccttatgcatttctagtggc--ttttttta i canFam3.chr26 C 0 I 1103 s dasNov3.JH568189 846978 887 - 1116856 ctgggcacatgg-------------------------tcagt----------gcCATGTATGTGCTAGC--TGATTG-------------CCAAAGGCATGCTGGGAAAGCCCCATT-CTGCCCTGTCCCCCAGCTGATCAGTGCCCTCCGCCCTAC----CAGCATG--------------CATTTCTCAGATACCTGTCCAGAG-ATTTCTCTGTA---------CTGTCAAGGAATCTCAGAT-ATACCAGTGTCTCTTCAGTACCTGTCTTTGGATTCTGAAGGT--TTGCTGAGTAAGGGACACTGGtatattctttttctcct-tgctctggtatataaat-------ggcaacacataatacatattttt--atgcacttgggcttttcactta-----actatgtattttggaga----ttttgtatatcaatatatgaagaacttccccagtatttttcaacagccatatcacattctcctggacaactgtgccacaatttatatatcagccccttgttgatga-----------agcttta-gctcagctccagtctctcagcattacaaacactatggaaaagaataagcctgaccctgcttcattgtgc-cctgtg-----------g--atggctaaacttccagaagaggagttgctaagtcaaacagtgtgtgtgtttatagatttcctaaccattat---ccatcctc-----ctccatgggactgta------------cc-actagcagtct--g-tgag-agtgcct-ctttctcacagcctcatcagcagagtgtgttagcaaacatttggatttttgcc-agttttgtagatgaaaaatggtatttcagtggtcttaatttgcatttttcttcctatgagggaaattgact------tttatttcatatgt-gaaaaatgtg------agtcatgtgtatttccttttctgtgactgttagttta----------ta-------tgctttgc----ctatatattagttgggtggtgg--------------tttttttt-tcctatccattttcaggaac--tttttata i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6725279 2162 - 9870158 I a score=1671731.000000 s hg38.chr12_KI270834v1_alt 79256 150 + 119498 taatggggaGCTCAGCTTTTTATCCATAAGGTGAGTTGCAAATCTTTTCCTGGTTTGTCATGGGCTAtttgactttgtttatgaggtttatgtgtgtgtttgtttttgccatct----atgtttatttttatgtGGCAGGTTTTAGCAATAttt s panTro5.chr12 127365255 150 + 137163284 taatggggaGCTCAGCTTTTTATCCATAAGGTGAGTTGCAAATCTTTTCCTGGTTTGTCATGGGCTATTTGACTTTGTTTATGAGgtttatgtgtgtgtgtgtttttgccatct----atgtttatttttatgtGGCAGATTTTAGCAATAttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125716297 150 + 135337776 taatggggaGCTCAGCTTTTTATCCATAAGGTGAGTTGGAAATCTTTTCCTGGTTTGTCATGGGCTATTTGACTTTGTTTATGAGgtttatgtgtgtgtgtgtttttgccatct----atgtttatttttatgtGGCAGATTTTAGCAATAttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8229656 149 - 8369578 taatggggaGCTCAGCTTTTTATCCATAAGGTGAGTTGCAAATCTTTTCCTGGTTTGTCATGGGCTATTTGACTTTGTTTATGAGgtttatatgtgtgtttgtttttgccatct----atgtttatttttatgtGGCAGA-TTTAGCAATAttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97887903 150 + 106955855 taatggtgagatcagCTTTTTATCTGTAAGGTGAGTTGAAAATCTTTTCCTGGTTTGTCATGGGCCAtttgactttgtttatgaggtttgtgtgtgtgtttgtttttgCCATGT----ATATTTATTTTTATGCGGCAGATTTTAGCAATATTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124003063 150 + 133663169 caatggggagatcagCTTTTTATCCATAAGGTGAGTTGCAGATCTTTTCCTGGTTTGCCATGGGCCATTTGACtttgtttaggaggtttgtgtgtgtgtttgtttttgccatgt----atgtttatttttatgtGGCAGATTTTAGCAATATTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128251164 150 + 137757926 caatggggagatcagCTTTTTATCCATAAGGTGAGTTGCAGATCTTTTCCTGGTTTGCCATGGGCCATTTGACtttgtttaggaggtttgtgtgtgtgtttgtttttgccatgt----atgtttatttttatgtGGCAGattttagcaatattt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10649750 150 - 16319837 caatggggagatcagCTTTTTATCCATAAGGTGAGTTGCAGATCTTTTCCTGGTTTGCCATGGGCCATTTGACtttgtttaggaggtttgtgtgtgtgtttgtttttgccatgt----atgtttatttttatgtGGCAGATTTTAGCAATATTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12273415 150 + 20526591 caatggggagatcagCTTTTTATCCATAAGGTGAGTTGCAGATCTTTTCCTGGTTTGCCATGGGCCATTTGACtttgtttaggaggtttgtgtgtgtgtttgtttttgccatgt----atgtttatttttatgtGGCAGATTTTAGCAATAttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119245174 150 + 128539186 caatggggagatcagCTTTTTATCCATAAGATGAGTTGCAGATCTTTTCCTGGTTTGCCATGGGCCATTTGACTTTGTTTAGGAGGTTTGTGTGTGTGTGTGTTTTTGCCATGT----ATGTTTATTTTTATGTGGCAGATTTTAGCAATATTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 587273 150 + 6255621 caatggggagatcagCTTTTTATCCATAAGGTGAGTTGCAGATCTTTTCCTGGTTTGCCATGGGCCATTTGACtttgtttaggaggtttgtgtgtgtgtttgtttttgccatgt----atgtttatttttatgtGGCAGATTTTAGCAATAttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4622636 150 - 8658521 cagtggggagatcagCTTTTTATCCATAAGGTGAGTTGCAAATCTTTTCCTGGTTTGCCATGGGCCATTTGACtttgtttaggaggtttgtgtgtgtgtttgtttttgccatgt----atgtttatttttatgtGGCAGATTTTAGCAATAttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114822950 146 + 124281992 taatggggagatcagcttttcatccataaggtgagttgcaaatcttttcctggtttgtcatgggccatttgattttgtttatgaagtttgtgtgtg----tgtttctgccatgt----atgtttatttttatgtggcagattttagcagtattt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 467518 145 - 9212255 taatggggagattagCTTTTCATCCATAAGGTGAGTTGC-AATCTTTTCCCGGTTTGTCATGGGCCATTTGATTTTGTTTATGAAGTTTGTGTGTG----TGTTTCTGCCATGT----ATGTGCATTTTTATGTGGCAGattttagcagtattt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2886455 145 + 4466143 taatggggagattagCTTTTCATCCACAAAGTGAGTTGA-AATCTTTTCCTGGTTTGTCATGGGCCATTtgattttgtttatgaagtttgtgtgtg----tgtttctgccgtgt----atgtttatttttatgtGGCAGATTTTAGCAGTATTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1589047 140 + 5364348 taatggggagattagCTCTTCATCCATAAAGTGAGTTGCAAATCTTCTCCTGGTTTGTCATGGGCCATTTGATTTTGTTTATGAAGTTTGTGTGTG----TGTTTCTGCCATGT----ATG------TTTATGTGACAGATTTTAGCAGTATTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4312900 133 + 7922563 TAA--------------CTCCATC-ATCATGTGAGTTGCAAGTATTTAACCAGCTTGTCATGGGCAGTTTGACTTTGTTGATGAGGTTTGTATGTGTG--TGTGTTTGCCATGT----ATGTTTATTTTTATGTGGTGGATTGTAGCAATATTT i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 847865 142 - 1116856 taatagggagat-AGCTTGTTGTTCTGGATGTTAGttgcaaatatttttctaattt-------gccatttgactttgt----gagttttgtgtgtgtgtttgtttttgccatatgtaaattttaatttttatatggcagattttatcaatattt i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6725279 2162 - 9870158 I e canFam3.chr26 33165172 1103 - 38964690 I a score=37128.000000 s hg38.chr12_KI270834v1_alt 79406 3 + 119498 tat s panTro5.chr12 127365405 3 + 137163284 tat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125716447 3 + 135337776 tat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8229805 3 - 8369578 tat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97888053 3 + 106955855 TAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124003213 3 + 133663169 TAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128251314 3 + 137757926 tat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10649900 3 - 16319837 TAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12273565 3 + 20526591 tat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119245324 3 + 128539186 TAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 587423 3 + 6255621 tat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4622786 3 - 8658521 tat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114823096 3 + 124281992 tat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 467663 3 - 9212255 tat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2886600 3 + 4466143 TAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1589187 3 + 5364348 TAT i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 848007 3 - 1116856 tat i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6725279 2162 - 9870158 I e canFam3.chr26 33165172 1103 - 38964690 I e otoGar3.GL873618 4313033 0 + 7922563 C a score=13974.000000 s hg38.chr12_KI270834v1_alt 79409 8 + 119498 tttgtggc s panTro5.chr12 127365408 8 + 137163284 tttgtggc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125716450 8 + 135337776 tttgtggc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8229808 8 - 8369578 tttgtggc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97888056 8 + 106955855 TTTGTGGC i nomLeu3.chr10 C 0 C 0 s cebCap1.NW_016107484v1 2886603 8 + 4466143 TTTGTGGC i cebCap1.NW_016107484v1 C 0 C 0 s dasNov3.JH568189 848010 8 - 1116856 tttgtaga i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6725279 2162 - 9870158 I e canFam3.chr26 33165172 1103 - 38964690 I e otoGar3.GL873618 4313033 0 + 7922563 C e aotNan1.NW_018491581v1 1589190 0 + 5364348 C e saiBol1.JH378194 467666 0 - 9212255 C e calJac3.chr9 114823099 0 + 124281992 C e colAng1.NW_012116043v1 4622789 0 - 8658521 C e manLeu1.NW_012103587v1 587426 0 + 6255621 C e chlSab2.chr11 119245327 0 + 128539186 C e cerAty1.NW_012001186v1 12273568 0 + 20526591 C e macNem1.NW_012010578v1 10649903 0 - 16319837 C e macFas5.chr11 128251317 0 + 137757926 C e rheMac8.chr11 124003216 0 + 133663169 C a score=-8326.000000 s hg38.chr12_KI270834v1_alt 79417 1 + 119498 ------------------------------t s panTro5.chr12 127365416 2 + 137163284 -----------------------------tt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125716458 1 + 135337776 ------------------------------t i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8229816 2 - 8369578 -----------------------------tt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97888064 31 + 106955855 TTTTTTCtttttttcttttcttttctttttt i nomLeu3.chr10 C 0 C 0 s cebCap1.NW_016107484v1 2886611 1 + 4466143 -----------------------------A- i cebCap1.NW_016107484v1 C 0 C 0 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6725279 2162 - 9870158 I e dasNov3.JH568189 848018 0 - 1116856 C e canFam3.chr26 33165172 1103 - 38964690 I e otoGar3.GL873618 4313033 0 + 7922563 C e aotNan1.NW_018491581v1 1589190 0 + 5364348 C e saiBol1.JH378194 467666 0 - 9212255 C e calJac3.chr9 114823099 0 + 124281992 C e colAng1.NW_012116043v1 4622789 0 - 8658521 C e manLeu1.NW_012103587v1 587426 0 + 6255621 C e chlSab2.chr11 119245327 0 + 128539186 C e cerAty1.NW_012001186v1 12273568 0 + 20526591 C e macNem1.NW_012010578v1 10649903 0 - 16319837 C e macFas5.chr11 128251317 0 + 137757926 C e rheMac8.chr11 124003216 0 + 133663169 C a score=241005.000000 s hg38.chr12_KI270834v1_alt 79418 305 + 119498 tttttttttgagacagagtcttgctcagtcacccaggctggagtgcagtggcacgatctcggctcactgcaacctccgcctcccgggttcacgccattc-tcctgcctcagcctcctgagtagctccagcctcctgagtacctccagacgccc-gccacgacgcctggctaa-tttttttttgtatttttagtggagatggggtttcaccatgttagccaggatggtctcgatctcctgaccttgtgatccacccgcctcggcctcccaaagtgct------------------------------gggattacaggagtgagccactgcgcccggcc s panTro5.chr12 127365418 306 + 137163284 tttttttttgagacagagtcttgctcagtcacccaggctggagtgcagtggcacgatctcggctcactgcaacctccgcctcccgggttcacgccattc-tcctgcctcagcctcctgagtagctccagcctcctgagtacctccagacgccc-gccacgacgcctggctaattttttttttgtatttttagtggagatggggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccacccgcctcggcctcccaaagtgct------------------------------gggattacaggagtgagccaccgcgcccggcc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125716459 302 + 135337776 tttttttttgagacagagtcttgctcagtcacccaggctggagtgcagtggcacgatctcggctcactgcaacctccgcctcccgggttcacgccattc-tcctgcctcagcctcctgagtagctccagcctcctgagtacctccagacgccc-gccacgacgcctggctaa--ttttttttgtatttttagtggagatggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------------------------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8229818 305 - 8369578 tttttttttgagacagagtcttgctcagtcacccaggctggagtgcagtggcacgatctcggctcactgcaacctccacctcccgggttcacgccattc-tcctgcctcagcctcctgagtagctccagcctcctgagtacctccagacgcccggccacgatgcctggctaa--ttttttttgtatttttagtggagatggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgcc------------------------------gggattacaggagtgagccaccgcgcccggcc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97888095 295 + 106955855 tttttttttgagacggagtcttgctcagtcacccaggctggagtgcagtggcacgatctcggctcactgcagcctctgcctcccgggttcacgccatttatcctgcctcagcctcctgagtagct------------gggactacagacgccc-gccacaacacctggctaattttttttttgtatttttagtagagatgggatgtcaccatgttaaccaggatggtcttgatctcctgaccttgtgatccacctgtcttggcctcccaaagtgct------------------------------gggattacaggagtgagccaccgcgcccggcc i nomLeu3.chr10 C 0 C 0 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6725279 2162 - 9870158 I e dasNov3.JH568189 848018 0 - 1116856 C e canFam3.chr26 33165172 1103 - 38964690 I e otoGar3.GL873618 4313033 0 + 7922563 C e aotNan1.NW_018491581v1 1589190 0 + 5364348 C e cebCap1.NW_016107484v1 2886612 0 + 4466143 C e saiBol1.JH378194 467666 0 - 9212255 C e calJac3.chr9 114823099 0 + 124281992 C e colAng1.NW_012116043v1 4622789 0 - 8658521 C e manLeu1.NW_012103587v1 587426 0 + 6255621 C e chlSab2.chr11 119245327 0 + 128539186 C e cerAty1.NW_012001186v1 12273568 0 + 20526591 C e macNem1.NW_012010578v1 10649903 0 - 16319837 C e macFas5.chr11 128251317 0 + 137757926 C e rheMac8.chr11 124003216 0 + 133663169 C a score=54913.000000 s hg38.chr12_KI270834v1_alt 79723 8 + 119498 TTTGTGGC s panTro5.chr12 127365724 8 + 137163284 TTTGTGGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125716761 3 + 135337776 -----NNN i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8230123 8 - 8369578 TTTGTGGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97888390 8 + 106955855 TTTGTGGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124003216 8 + 133663169 TTTGTGAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128251317 8 + 137757926 tttgtgac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10649903 8 - 16319837 TTTGTGAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12273568 8 + 20526591 tttgtgac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119245327 8 + 128539186 TTTGTGAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 587426 8 + 6255621 tttgtgac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4622789 8 - 8658521 tttgtgac i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114823099 8 + 124281992 tttgtggc i calJac3.chr9 C 0 I 1 s saiBol1.JH378194 467666 8 - 9212255 tttatggc i saiBol1.JH378194 C 0 I 1 s aotNan1.NW_018491581v1 1589190 8 + 5364348 TTTGTGGC i aotNan1.NW_018491581v1 C 0 I 1 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6725279 2162 - 9870158 I e dasNov3.JH568189 848018 0 - 1116856 C e canFam3.chr26 33165172 1103 - 38964690 I e otoGar3.GL873618 4313033 0 + 7922563 C e cebCap1.NW_016107484v1 2886612 0 + 4466143 C a score=2891838.000000 s hg38.chr12_KI270834v1_alt 79731 302 + 119498 tttttttaaattta-ttttttgagacagagtctcattctgtcacctaggctggagtgcagtggcgcgatctcggctcactgcaacccctgccttccaggttcaaacgattctcctgcctcagcctcacaagtagctggggttatagacacccaccaccatgcccggctaatgtttgtatttttagtagagatgggctttcaccatgttggccaagctggtctcaaactcctgacctcaggtgatccacccacctcagcctcccaaagtgttgggattacaggcatgagccaccgcacccgacc s panTro5.chr12 127365732 302 + 137163284 tttttttaaattta-ttttttgagacagagtctcattctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacccctgccttccaggttcaaacgattctcctgcctcagcctcacaagtagctggggttatagacacccaccaccatgcccggctaatgtttgtatttttagtagagatgggctttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccacctcagcctcccaaagtgttgggattacaggcatgagccaccgcacccgacc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125716764 301 + 135337776 NNNtttttaattta--tttttgagacagagtctcattctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacccctgccttccaggttcaaacgattctcctgcctcagcctcacaagtagctggggttatagacacccaccaccatgcccggctaatgtttgtatttttagtagagatgggctttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccacctcagcctcccaaagtgttgggattacaggcatgagccaccgcacccgacc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8230131 299 - 8369578 -TTTTTAAAAttta-ttttttgagac--agtctcattctgtctcccaggctggagtgcagtggcatgatctcggctcactgcaacccctgccttccaggttcaaacgattctcctgcctcagcctcacaagtagctggggttatagacacccaccaccatgcccggctaatgtttgtatttttagtagagatgggctttcgccatgttagccaggctggtctcaaactcctgacctcaggtgatccacccacctcagcctcccaaagtgttgggattacaggcatgagccaccgcacccgacT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97888398 301 + 106955855 -tttttttaattta-ttttttgagacagagtctcattctgtcgcccaggctggagtgcagtggtgcgatctcggctcactgcaacccccgccttccaggttcaaacgattctcctgcctcagcctcacaagtagctggggttatagacacccaccaccacgcctggctaatttttgtatttttagtagagatgggctttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccacctcagcctcctaaagtgttgggattacaggcatgagccaccgcacctgacc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124003224 302 + 133663169 TTTTTTAAAATTAA-ttttttgagacagagtctcattctgtcacccaggctggagtgcagtggcgcaatctcggctcactgcaacctccaccttccaggttcagatgattctcctgcctcagcctcacaagtagctggaattacagacacccaccaccatgcctggctaaattttgtatttttagtagagatgggctttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccacctcagcctcccaaagtgttgggattacaggtatgagccactgcacccaacc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128251325 302 + 137757926 ttttttaaaattaa-ttttttgagacagagtctcattctgtcacccaggctggagtgcagtggcgcaatctcggctcactgcaacctccaccttccaggttcagacgattctcctgcctcagcctcacaagtagctggaattacagacacccaccaccatgcctggctaatttttgtatttttagtagagatgggctttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccacctcagcctcccaaagtgttgggattacaggtatgagccactgcacccaacc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10649911 302 - 16319837 TTTTTTAAAATTAA-ttttttgagacagagtctcattctgtcacccaggctggagtgcagtggcgcaatctcggctcactgcaacctccaccttccaggttcagacgattctcctgcctcagcctcacaagtagctggaatcacagacacccaccaccatgcctggctaatttttgtatttttagtagagatgggctttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccacctcagcctcccaaagtgttgggattacaggtatgagccactgcacccaacc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12273576 302 + 20526591 tttttttaaattaa-ttttttgagacagagtctcattctgtcacccaggctggagtgcagtggtgcaatctcggctcactgcaacctccaccttccaggttcagacgattctcctgcctcagcctcacaagtagctggaattacagacacccaccaccatgcccggctaatttttgtatttttagtagagatgggctttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccacctcagcctcccaaagtgttgggattacaggtatgagccactgcacccaacc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119245335 302 + 128539186 TTTTTTAAAACTAA-ttttttgagacagaatctcattctgtcccccaggctggagtgcagtggcgcaatctcagctcactgcaacctccgccttccaggttcaaacggttctcctgcctcagcctcacaagtagctggaattacagacacccaccaccatgcccggctaatttttgtatttttagtagagatgggctttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccactcacctcagcctcccaaagtgttgagattacaggtatgagccactgcacccAATC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 587434 302 + 6255621 ttttttaaaattca-ttttttgagacagagtctcattctgtcacccaggctggagtgcagtggcgcaatctcggctcactgcaacctccaccttccaggttcatacgattctcctgcctcagcctcacaagtagctggaattacagacacccaccaccatgcccggctaatttttgtatttttagtagagatgggctttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccgcccacctcagcctcccaaagtgttgggattacaggtatgagccactgcacccaacc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4622797 302 - 8658521 ttttttaaaattaa-ttttttgggacagagtctcattctgtcacccaggctggagtgcagtggcgcaatctcggctcaccgcaacctccgccttgcaggttcaaacgattctcctgcctcagcctcacaagtagctggaattacagacacccaccaccatgcccagctaatttttgtatttttagtagagatgggctttcaccatgttggccaggctggtctcgaactcctgacctgaggtgatccacccacctcagcctcccaaactgttgggattacaggcatgagccactgcacccaacc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114823108 302 + 124281992 ttttttaaaatttatttttttgagatggagtctcgttctgttgcccgggctcgagtgcagtggcgcgatcttggctcagtgcaacctctgcctccagggctcaggcgattctcctgcctcagcctcccaagtagttggaattacaggaacccatcaccatgcccggctaatttttgtatttttagtagagatgggatttcaccacagtggctgggctggtcttgaactactga-ctcaggtgatccagccccctcagcctcccaaagtgcagggattccaggcatgagccactgcgcccagcc i calJac3.chr9 I 1 C 0 s saiBol1.JH378194 467675 298 - 9212255 tttttaaaaattta----tttgagatggagtctcgttctgtcacccaggctggagtgcagtggtgtgatctcggctcactgcaacctctgcctccaggactcaggcgattctcctgccttagcctcccaagtagctggaattacaggaacccatcaccatgcctgactaatttttgtatttttagtagagatgggatttcaccacattggttgggctggtcttgaactcctga-ctcaggtgatccagccccctcagcctcctaaagtgcagggattacagtcatgagccactgcgtctggcc i saiBol1.JH378194 I 1 C 0 s cebCap1.NW_016107484v1 2886612 302 + 4466143 tttttttaaattaatttttttgagatggagtctcgttctgttgccccagctggagtgcagtggtgtgatcttggctcactgcaacctctgcctccagggctcaggcaattctcctgcctcagcctcccaagtagctggaattacaggaacccatcaccatgcccggctaatttttgtatttttagtagagatgggatttcactacattggctgggctggtcttggactcctga-ctcaggtgatccagccgcctcagcctcccaaagtgcagggagtacaggcatgagccactgcatctggcc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1589199 301 + 5364348 ttttttaaaatttacttttttgagatggagtttcattctgttgccctggctggagtgcagtggcatgatcttggctcactgcaacctctgcctccagagctcaggcgattctcctgcctcagcctcccaagtagctggaattacaggaa-ccatcaccatgcccagctaatttttgtatttttagtagagccgggatttcaccacaatggctgggctggtcttgaactcctga-ctcaggtgatccaggcccctcagcctcccaaagtgcagggattacaggcatgagccactgtgctcggcc i aotNan1.NW_018491581v1 I 1 C 0 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6725279 2162 - 9870158 I e dasNov3.JH568189 848018 0 - 1116856 C e canFam3.chr26 33165172 1103 - 38964690 I e otoGar3.GL873618 4313033 0 + 7922563 C a score=121124.000000 s hg38.chr12_KI270834v1_alt 80033 10 + 119498 TATTTTGTGG s panTro5.chr12 127366034 10 + 137163284 TATTTTGTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125717065 10 + 135337776 TATTTTGTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8230430 10 - 8369578 TATTTTGTGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97888699 10 + 106955855 TATTTTGTGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124003526 10 + 133663169 TATTTTGTGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128251627 10 + 137757926 tattttgtgg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10650213 10 - 16319837 TATTTTGTGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12273878 10 + 20526591 TATTTTGTGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119245637 10 + 128539186 TACTTTGTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 587736 10 + 6255621 TATTTTGTGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4623099 10 - 8658521 TATTTGGTGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114823410 10 + 124281992 tcttttgtgg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 467973 10 - 9212255 ttttttgtgg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2886914 10 + 4466143 TTTTTTGTGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1589500 10 + 5364348 TTTTTTGTGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4313033 10 + 7922563 TATTTTGTGG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33166275 10 - 38964690 tattttatgg i canFam3.chr26 I 1103 C 0 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6725279 2162 - 9870158 I e dasNov3.JH568189 848018 0 - 1116856 C a score=463503.000000 s hg38.chr12_KI270834v1_alt 80043 37 + 119498 CTTTTGGATATTGTGTCCTAGTT-------AAAAGGCCTGATCA s panTro5.chr12 127366044 37 + 137163284 CTTTTGGATATTGTGTCCTAGTT-------AAAAGTCCTGATCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125717075 37 + 135337776 CTTTTGGATATTGTGTCCTAGTT-------AAAAGTCCTGATCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8230440 37 - 8369578 CTTTTGGATATTGTGTCCTAGTT-------AAAAGGCCTGATCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97888709 37 + 106955855 CTTTTGGATATTGTGTCCTAGTT-------AAAAGGCCTGATCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124003536 37 + 133663169 CTTTTGGATATTGTGTCCTAGTT-------AAAAGACCTGATTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128251637 37 + 137757926 cttttggatattgtgtcctagtt-------aaaagacctgatta i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10650223 37 - 16319837 CTTTTGGATATTGTGTCCTAGTT-------AAAAGACCTGATTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12273888 37 + 20526591 CTTTTGGATATTGTGTCCTAGTT-------AAAAGACCTGATTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119245647 37 + 128539186 CTTTCGGATAttgtgtcccagtt-------aaaagacctgatta i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 587746 37 + 6255621 CTTTTGGATATTGTGTCCTAGTT-------AAAAGACCTGATTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4623109 37 - 8658521 CTTTTGGATATTGTGTCCTAGTT-------AAAAGACCTGATTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114823420 38 + 124281992 cttttggatattgtgtcctagtta------aaaaggcctgatca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 467983 37 - 9212255 cttttggatattgtgtcctagtt-------aaaaggcctgatca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2886924 37 + 4466143 CTTTTGGATATTGTGTCCTAGTT-------AAAAGGCCTGATCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1589510 37 + 5364348 CTTTTGGATATTGCGTCCTAGTT-------AAAAGGCCTGATCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4313043 34 + 7922563 TTCTTAGATACTGTGTCATAGTT----------AGGCCTTACCA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33166285 42 - 38964690 cttttggatataatgtaatacttaatacttaaaaggctttaa-- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 848018 37 - 1116856 cttctggatattgtgttgtagtt-------aaaaggccttatca i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9472246 2380 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6725279 2162 - 9870158 I a score=17424.000000 s hg38.chr12_KI270834v1_alt 80080 2 + 119498 CA s panTro5.chr12 127366081 2 + 137163284 CA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125717112 2 + 135337776 CA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8230477 2 - 8369578 CA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97888746 2 + 106955855 CG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124003573 2 + 133663169 CA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128251674 2 + 137757926 ca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10650260 2 - 16319837 CA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12273925 2 + 20526591 CA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119245684 2 + 128539186 ca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 587783 2 + 6255621 CA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4623146 2 - 8658521 CA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114823458 2 + 124281992 ca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 468020 2 - 9212255 ca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2886961 2 + 4466143 CA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1589547 2 + 5364348 CA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9474626 2 - 31815103 CA i micMur3.chr21 I 2380 C 0 s otoGar3.GL873618 4313077 2 + 7922563 TG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33166327 1 - 38964690 -a i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 848055 1 - 1116856 c- i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6725279 2162 - 9870158 I a score=1856988.000000 s hg38.chr12_KI270834v1_alt 80082 123 + 119498 CTGCAAGATTGTAAAATAAT---TTCCCCATGATTtcttttggtactcttatgttttaa-ttttttatatttaaatcttttatctattGAGGATTTTTTTCCTGGGGTTCTGTGTGAGTTTGGATCC s panTro5.chr12 127366083 123 + 137163284 CTGCAAGATTGTAAAATAAT---TTCCCCATGATTTCTTTTTGTACTCTTATGTTTTAA-TTTTTTATATTTAAATCTTTTATCTATTGAGGATTTTTTTCCTGGGGTTCTGTGTGAGTTTGGATCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125717114 123 + 135337776 CTGCAAGATTGTAAAATAAT---TTCCCCATGATTTCTTTTTGTACTCTTATGTTTTAA-TTTTTTATATTTAAATCTTTTATCTATTGAGGATTTTTTTCCTGGGGTTCTGTGTGAGTTTGGATCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8230479 123 - 8369578 CTGCAAGATTGTAAAATAAT---TTCCCCATGATTTCTTTTTGTACTCTTATGTTTTAA-TTTTTTATATTTAAATCTTTTATCTATTGAGGATTTTTTTCCTGGGGTTCTGTGTGAGTTTGGATCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97888748 123 + 106955855 CTGCAAGATTGTAAAATAAT---TTCCCCATGATTTCTTTTTGTACTCTTATGTTTTAA-TTTTTTATATTTAAATCTTTTATCTATTGAGGATTTTTTTCCTGGGGTTCTGTGTGAGTTTGGATCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124003575 123 + 133663169 CTGCAAGATTGTAAAATAAT---TTCCCCATGAtttctttttgtattcttatggtttaa-ttttttatatttaaatcttttatctattGAGGATTTTTTTCCTGTGGTTTTGTGTGAGTTTGGATCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128251676 123 + 137757926 ctgcaagattgtaaaataat---ttccccatgatttctttttgtattcttatggtttaa-ttttttatatttaaatcttttatctattgaggatttttttcctgaggttttgtgtgagtttggatcc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10650262 123 - 16319837 CTGCAAGATTGTAAAATAAT---TTCCCCATGATTTCTttttgtattcttatggtttaa-ttttttatatttaaatcttttatctattGAGGATTTTTTTCCTGTGGTTTTGTGTGAGTTTGGATCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12273927 123 + 20526591 CTGCAAGATTGTAAAATAAT---TTCCCCATGATTTCTTTTTGTATTCTTATGGTTTAA-TTTTTCATATTTAAATCTTTTATCTATTGAGGATTTTTTTCCTGGGGTTTTGTGTGAGTTTGGATCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119245686 123 + 128539186 ctgcaagattgtaaaataat---ttccccatgatttctttttgtactcttatggtttaa-ttttttatatttaaatcttttatctattgaggatttttttcctggggttttgtgtgagtttggatcc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 587785 123 + 6255621 CTGCAAGATTGTAAAATAAT---TTCCCCATGAtttctttttgtattcttatggtttaa-ttttttatatttaaatcttttatctattGAGGATTTTTTCCCTGGGGTTTTGTGTGAGTTTGGATCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4623148 123 - 8658521 CTGCAAGACTGTAAAATAAT---TTCCCCATGATTTCTTTTTGTACTCTTATGGTTTAA-TTTTTTATATTTAAATCTTTTATCTATTGAGGATTTTTTTCCTGGGGTCTTGTGTGAGTTTGGATCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114823460 124 + 124281992 ctgcaagaatgtcaaataat---ttccccatgatttctttttgtactcgtatggtttaatttttttatattgaaatcttttatctattgaggatatttttcctcgggttccgtgtgagtttggatcc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 468022 123 - 9212255 ctgcaagagtgtaaaataat---ttccccattatttctttttgtactcttatggtttta-ttttttatatttaaatcttttatctattgaggatatttttcctcggtttccgtgtgagtttggatcc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2886963 124 + 4466143 CTGCAAGAGTGTAAAATAAT---TTCCCCATTATTTTTTTTTGTACTCTTATGAGTTTAATTTTTTATATTTAAATCTTTTATCTATTGAGGATATTTTTCCTCGGGTTCCGTGTGAGTTTGGATCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1589549 124 + 5364348 CTGCAAGAGTGTAAAATAAT---TTCCCCACGATTTCTTTTTGTACTCTTATGGTTTAATTTTTTTATATTTAAATCTTTTATCTATTGAGGATATTTTTCCTCGGGTTCTGTGTGAGTTTGGATCC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9474628 120 - 31815103 CTGCAAGACTGTAAAATAAT---TTCCCTGTGGTTTCTTTCTGCACCTTTATGGTTTAA-TTTTTTATATTGGAATATTTTATCTATTGGGGATTTCTTTCCCGGGGTTCCCTGTGCG---GGGCCC i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6727441 123 - 9870158 CTGCAAGATTGCAAAATAAT---TTCCCCGTGGTTTCTTTCTGTACCTTTATGGTTTGA-TTTTTTACATCGAAATCTTTTATCGATTGGGGATTTCTTTCCCAGGGTTCCCTGTGAGTTCGGATCC i proCoq1.NW_012154285v1 I 2162 I 383 s otoGar3.GL873618 4313079 119 + 7922563 --ACAAGATTGTAAAATAAT---TTCTCTGTGGTTTCAT--TAAATTTTTATGGTTTAG-TTTTTTATATTCCTATCTTTTATCTCTTGGTGATTTCATTCCCAGGGTCCCATGTGAGTTTGGATCC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33166329 117 - 38964690 ctgcaggattataaaacagt---ttccccatgatttcttcctgtacttttacagtttaa-ttctatacagttaaatatttgatcttttgga-----ttttactggagttcagtgt-agttcggatcc i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 848056 124 - 1116856 -tgcaaagttagaaaataatttcttccctgtggtttctactagtatttatatggtttaatttttttacatttaaatctttgatctattcgggat--tttccctggagttcaatatgagtttggatca i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124813998 360 + 151834684 I a score=3748667.000000 s hg38.chr12_KI270834v1_alt 80205 286 + 119498 AATTTGAGTTTTTCCAGATGAGTAAAATCTGGCTTTTCTCAGGTCATTTGGATGTTAAGCGCAATGAGCCGG-CACTTACATCTTGACAATTTTATAATCTTTTAAGTCCTTAA-AAAGCGCTTCCTTCTTATCATACTCAATCCTCTTTGTAGAAATCATTAAATGTTAAG-GCA-GGAAGATGAAGAGTCATGAAGATTAGAAGTAGATGTTT-CTCTAACTATAAAACTATAAAAGCCTC-CCTTTGTTGCTGGCTCTTGAGTTTCACTTTTCTTCCTTTCATTCATTC s panTro5.chr12 127366206 286 + 137163284 AATTTGAGTTTTTCCAGATGAGTAAAATCTGGCTTTTCTCAGGTCATTTGGATGTTAAGCGCAATGAGCCGG-CACTTACATCTTGACAATTTTATAATCTTTTAAGTCCTTAA-AAAGCGCTTCCTTCTTATCATACTCAATCCTCTTTGTAGAAATCATTAAATGTTAAG-GCA-GGAAGATGAAGAGTCATGAAGATTAGAAGTAGATGTTT-CTCTAACTATAAAACTATAAAAGCCTC-CCTTTGTTGCTGGCTCTTGAGTTTCACTTTTCTTCCTTTCATTCATTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125717237 286 + 135337776 AATTTGAGTTTTTCCAGATGAGTAAAATCTGGCTTTTCTCAGGTCATTTGGATGTTAAGCGCAATGAGCCGG-CACTTACATCTTGACAATTTTATAATCTTTTAAGTCCTTAA-AAAGCGCTTCCTTCTTATCATACTCAATCCTCTTTGTAGAAATCATTAAATGTTAAG-GCA-GGAAGATGAAGAGTCATGAAGATTAGAAGTAGATGTTT-CTCTAACTATAAAACTATAAAAGCCTC-CCTTTGTTGCTGGCTCTTGAGTTTCACTTTTCTTCCTTTCATTCATTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8230602 285 - 8369578 AATTTGAGTTTTTCCAGATGAGTAAAATCTGGC-TTTCTCAGGTCATTTGGATGTTAAGCGCAATGAGCCGG-CACTTACATCTTGACAATTTTATAATCTTTTAAGTCCTTAA-AAAGCGCTTCCTTCTTATCATACTCAATCCTCTTTGTAGAAATCATTAAATGTTAAG-GCAGGGAAGATGAAGAGTCATGAAGATTAGAAGTAGATGTTT-CTCTAACTATAAAACTATAAAAGCCTC-CCTTTGTTGCTGGCTCTTGAGTTTCACTTTTCTTCCTTTCATTCA-TC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97888871 286 + 106955855 AATTTGAGTTTTTCCAGATGAGTAAAATCTGGCTTTTCTCAGGTCATTTGGATGTTAAGCACAATGAGCCAG-CACTTACATCTTGACAATTTTATAATCTTTTAAGTCCTTAA-AAAGCGCTTCCTTCTTATCATACTCAATCCTCTTTGTAGAAATCATTAAATGTTAAG-GCA-GGAAGATGAAGAGTCATGAAGATTAGAAGTAGATGCTT-CTCTAACTATAAAACTATAAAAACCTC-CCTTTGTTGCTGGCTCTTGAGTTTTACTTTTCTTCCTTTCATTCATTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124003698 285 + 133663169 AATCTGAGTTTTTCCAGATGACTAAAATCTGGCTTTTCTCAGGTCATTTGGATGTTAAGCACAATGAGCCAG-CACTTACATCTTGACAATTTTATAATCTTTTAAGTCCTTAA-AAAGCGTTTCCTTCTTATCATACTCAATCCTCTTTGTGGAAA-CATTAAATGTTAAG-GCA-GGAAGATGAAGAGTCATGAAGATTAGAAGTAGATGTTT-CTCTAACTATAAAAGTATAAAAGGCTC-CCTTTGTTGCTAGCTTTTGATTTTTACTTTTCTTCCTTTCATTCATTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128251799 285 + 137757926 agtctgagtttttccagatgactaAAATCTGGCTTTTCTCAGGTCATTTGGATGTTAAGCACAATGAGCCAG-CACTTACATCTTGACAATTTTATAATCTTTTAAGTCCTTAA-AAAGCGTTTCCTTCTTATCATACTCAATCCTCTTTGTGGAAA-CATTAAATGTTAAG-GCA-GGAAGATGAAGAGTCATGAAGATTAGAAGTAGATGTTT-CTCTAACTATAAAAGTATAAAAGGCTC-CCTTTGTTGCTAGCTTTTGATTTTTACTTTTCTTCCTTTCATTCATTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10650385 285 - 16319837 AATCTGAGTTTTTCCAGATGACTAAAATCTGGCTTTTCTCAGGTCATTTGGATGTTAAGCACAATGAGCCAG-CACTTACATCTTGACAATTTTATAATCTTTTAAGTCCTTAA-AAAGCGTTTCCTTCTTATCATACTCAATCCTCTTTGTGGAAA-CATTAAATGTTAAG-GCA-GGAAGATGAAGAGTCATGAAGATTAGAAGTAGATGTTT-CTCTAACTATAAAAGTATAAAAGGCTC-CCTTTGTTGCTAGCTTTTGATTTTTACTTTTCTTCCTTTCATTCATTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12274050 285 + 20526591 AATTTGAGTTTTTCCAGATGACTAAAATCTGGCTTTTCTCAGGTCATTTGGATGTTAAGCACAATGAGCCAG-CACTTACATCTTGACAATTTTATAATCTTTTAAGTCCTTAA-AAAGCGTTTCCTTCTTATCATACTCAATCCTCTTTGTGGAAA-CATTAAATGTTAAG-GCA-GGAAGATGAAGAGTCATGAAGATTAGAAGTAGATGTTT-CTCTAACTATAAAAGTATAAAAGGCTC-CCTTTGTTGCTGGCTTTTGATTTTTACTTTTCTTCCTttcattcattc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119245809 285 + 128539186 aatttgagtttttccagatgactaAAATCTGGCTTTTCTCAGGTCATTTGGATGTTAAGCACAATGAGCCAG-CACTTACATCTTGACAATTTTATAATCTTTTAAGTCCTTAA-AAAGCGTTTCCTTCTTATCATACTCAATCCTCTTTGTGGAAA-CATTAAATGTTAAG-GCA-GGAAGATGAAGAGTCATGAAGATTAGAAGTAGATGTTT-CTCTAACTATAAAAGTATAAAAGGCCC-CCTTTGTTGCTGGCTTTTGATTTTTACTTTTCTTCCTTTCATTCATTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 587908 285 + 6255621 AATTTGAGTTTTTCCAGATGACTAAAATCTGGCTTTTCTCAGGTCATTTGGATGTTAAGCACAATGAGCCAG-CACTTACATCTTGACAATTTTATAATCTTTTAAGTCCTTAA-AAAGCGTTTCCTTCTTATCATACTCAATCCTCTTTGTGGAAA-CATTAAATGTTAAG-GCA-GGAAGATGAAGAGTCATGAAGATTAGAAGTAGATGTTT-CTCTAACTATAAAAGTATAAAAGGCTC-CCTTTGTTGCTGGCTTTTGATTTTTACTTTTCTTCCTTTCATTCATTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4623271 286 - 8658521 AATTTGAGTTTTTCCAGATGACTAAAATCTGGCTTTTCTCAGGTCATTTGGATGTTAAGCACAATGAGCCAG-CACTTACATCTTGACAATTTTATAATCTTTTAAGTCCTTAA-AAAGCATTTCCTTCTTATCATACTCAATCCTCTTTGTGGGAATCATTAAATGTTAAG-GCA-GGAAGATGAAGAGTCATGAAGATTAGAAGTAGATGTTT-CTCTAACTATAAAAGTATCAAAGGCTC-CCTTTGTTGCTGGCTTTTGATTTTTACTTTTCTTCCTttcattcattc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114823584 284 + 124281992 aatttgagcttttctagatgactaAAATCTGGCTTTCTTCAGATCATGTGGATGTTAAGCGCAATGAGCCAG-TACTTACATCTTGACAATTTTATAATCTTTTAATTCCTTAA-AAAGCGCTTCCTTCTTATAGTAATCAATCCTCTTTGTAGAAATCATTAAATGTTGAG-GCA-GGAAGA-GCAGAGTCATGAAGATTAGAAGTAGATGTTT-CTCTAACTATAAAAGTATCAAAGGCTC-TCTTTGTTGCTGGCTTTGGA-TTTTACTTTTCTTCCTttcattcattc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 468145 285 - 9212255 aatttgagcttttccagatgactaAAATCTGGCTTTTTTCAGGTCATGTGGATGTTAAGCGCAATGAGCCAG-CACTTACATCTTGACAATTTTATAATCTTTTAATTCCTTAA-AAAGTGATTCCTTCTTATAATAATCAATCCTCTTTGTAGAAATCATTAAATGTTAAG-GCA-GGAAGACAAAGAGTCATGAAGATTAGAAGTAGATGTTT-CTCTAACTATAAAAGTATCAAAGGCTG-TCTTTGTTGCGGGCTTTGGA-TTTTACTTTTCTTCCTTTCATTCATTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2887087 285 + 4466143 AATTTGAGCTTTTCCAGATGACTAAAATCTGGCTTTTTTCAGGTCATGTGGATGTTAAGCGCAACGAGCCAG-CACTTACAACTTGACAATTTTATAATCTTTTAATTCCTTAA-AAAGCGATTCCTTCTTATAATAATCAATCCTCTTTGTAGGAATCATTAAATGTTAAG-GCA-GGAAGACGAAGAGTCATGAAGATTAGAAGTAGGTGTTT-CTCTAACTATAAAAGTATCAAAGGCTC-TCTTTGTTGCTGGCTTTGGA-TTTTACTTTTCTCCCTTTCATTCATTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1589673 269 + 5364348 AATTTGAGCTTTTCCAGATGACTAAAATCTGGCTTTTTTCAGGTCATGTGGATATTAAGTGCAATGAGCCAG-CACTTACATCTTGACAATTTTACAATCTTTTAATTCCTTAA-AAAGCGCTTCCTTCTTATAATAATCAATCCTCTTTGTAGAAATCATTAAATGTTAAG-G-----------------CATGAAGATTAGAAGTAGATGTTT-CTCTAACTATAAAAGCATCAAAAGCTC-TCTTTGTTGCTGGCTTTGGA-TTTTACTTTTCTTCCTTTCATTCATTC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9474748 278 - 31815103 -ACTTTGTTTTTTCCAGATGACTAGAGTCTGGCTTTCTTCAGGCCATTTTGATGTTAAGCACAATGAGCCGG-CACTTACAG-CTGGCAATTTCATAATCCATTAATTCCTTAAGAAAGCACTTCCTTCCTTTAATACTCAGTCCCCTTTGCAGAAGTCATTAAACGTTAAG-GC------GACGAGGAGTAACGAAGATTAGCAGTGGACGTTT-CTCC-ACCATAACAGTATAAAAGGCTC-CCTTTGTCACTGGCCTTCTG-TCTCACTTTTCTTCCTTTCGTTCATTC i micMur3.chr21 C 0 I 243 s otoGar3.GL873618 4313198 281 + 7922563 CACTTTGCTCTTTCCATATGGCTACACTCTGGCTCTCTTTAGGTCATTTGGATGTTAGGCAC-ATGAGCCAA-CACTTACATCCTGGCAATTTCATAATCCATTAATTCCTTAAAAAAGCACTTCCTTTCTTTAACATGCAGTTCCCTTTGCAAAGATCATTAAGTGTTAAG-GCA-GGCAGATGAGGGCTAATGAGGGTTAGAAGTGGATGCTT-CTCC-TCTGTAAAAGTATAAAGGGCTC-CCTTTGTTTCTGGCTTTTGA-TTTTACTTTTCTTCCTTTCATTCA--- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33166446 272 - 38964690 aattttattttttccagatgactatAATCTGGCTTTCTTTAGGTTGTTTGGATGTTAATTGTGGTGAGCCAG-CACTGACATCTTGACAATTTAGCACTTTCTT-----TCTGT-AATGTTCAATCTTTCTGTAATGTTCAATCCCCTTTGTAGTAGTCATCAGATATTAAG-GCA-GGAAGATTAGGAGTCATGAAGATTAAAAATGGATGATC-CTCT----GTAGTAG----AAATGCTC-CCTTTGTTACTGGCTTGAGA-TTTTCCTTTTTTTCCTtccattcattt i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 848180 266 - 1116856 cattttattttttccagatgactacgattgGGCGTTCTTTCTGTCATTGGGATGTTAAGTGTAATCCGCCAGCCACTTGCATATAGACAA-TTAATGGTCCTTGAATTCTGTAA-AGAGTACTTCCTCTCTATACTCCTCAGTCCCCTGTGTAGAAATCATCACCTGTTAAGAGCA-GGAGGATGATGAACAGTGAAGAGTAGCCGTGGATGTTTCCTCT--------TAGTATAAAAGGCTTGCCTGAGTCTACGGCTTATGG-TTTTACTCTTTTC-------------- i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6727564 383 - 9870158 I a score=1117518.000000 s hg38.chr12_KI270834v1_alt 80491 107 + 119498 AGTAGTCAGTGGGTGTCTGT-C-----CCCCACCCCACCCCTGCCCTGAGCAGGCACTGGGGCCCATCAGCAGTGAGGC-----AGGCAGGGTCTTCACTGCGTGGCGCTGACACTCT s panTro5.chr12 127366492 107 + 137163284 AATAGTCACTGGGTGTCTGT-C-----CCCCACCCCATCCCTGCCCTGAGCAGGCACTGGGGCCCATCAGCAGTGAGGC-----AGGCAGGGTCTTCACTGCGTGGTGCTGACACTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125717523 107 + 135337776 AATAGTCACTGGGTGTCTGT-C-----CCCCACCCCATCCCTGCCCTGAGCAGGCACTGGGGCCCATCAGCAGTGAGGC-----AGGCAGGGTCTTCACTGCGTGGTGCTGACACTCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8230887 107 - 8369578 AATAGTCACTGGGTGTCTGT-C-----CCCCACCCCACCCCTGCCCTGAGCAGGCACTGGGGTCCATCAGCAGTGAGGC-----AGGCAGGGTCTTCACTGCGTGGCGCTGACACTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97889157 112 + 106955855 AATAGTCATTGGGTGTCTGT-C-----CCCCACCCCACCCCCGCCCTGAGCAGGCACTGGGGCCCATCGGCAGTGAGACAGGCAAGGCAGGGTCTTCCCTGCGTGGCGCTGACACTCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124003983 116 + 133663169 AATAGTCACTGGGTGTCTGT-CCCCCACCCCACCCCACCCCTGCCCTGAGCAGGCACTGGGGCCGATCAGCAGTGAGACAGGG-AGGCAGGGCCTTCACTGCATGGAGCTGGCACTCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128252084 116 + 137757926 AATAGTCATTGGGTGTCTGT-CCCCCACCCCACCCCACCCCTGCCCTGAGCAGGCACTGGGGCCGATCAGCAGTGAGACAGGG-AGGCAGGGCCTTCACTGCATGGAGCTGGCACTCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10650670 116 - 16319837 AATAGTCACTGGGTGTCTGT-CCCCCACCCCACCCCACCCCTGCCCTGAGCAGGCACTGGGGCCGATCAGCAGTGAGACAGGG-AGGCAGGGCCTTCACTGCATGGAGCTGGCACTCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12274335 116 + 20526591 aatagtcattgggtgtctgt-cccctaccccaccccacccctgccctgagcaggcactggggccgatcagcagtgagacaggg-aggcagggccttcactgcatggagctgacactct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119246094 111 + 128539186 AATAGTCATTGGGTGTCTGT-C-----CCCCACCCCACCCCTGCCCTGAGCAGGCACTGGGGCCGATCAGCAGTGAGACAGGG-AGGCAGGGCCTTCACCGCATGGAGCTGGCACTCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 588193 116 + 6255621 AATAGTCATTGGGTGTCTGT-CCCCGACCCCACCCCACCCCTGCCCTGAGCAGGCAGTGGGGCCGATCAGCAGTGAGACAGGG-AGGCAGGGCCTTCACTGCATGGAGCTGGCACTCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4623557 111 - 8658521 aatagtcattgggtatctgt-c-----ccccatcccacccctgccctgagcaggcactggggccgatcagcagtgagacaagg-aggcagggccttcactgcatggagctggcactct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114823868 111 + 124281992 agtagtcactgggtgtctgt-c-----ccccaccccacccctgccctgagcaggcactggggccgatcagcagtgacacaggc-aggcggggccttcacggcatggagctgacactct i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 468430 99 - 9212255 GATAGTCGCTGGGTGTCTGT-C-----CCCCA------------CCTGAGCAGGCACTGGGGCCGATCAGCAGAGACATAGGC-AGGCAGGGCCTTCACTGCAGGGAGCGGACACTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2887372 100 + 4466143 GATAGCCACTTGGTGTCTGTCC-----CCCCA------------CCTGAGCAGGCACTGGGGCCGATCAGCAGAGACACAGGC-AGGTGGGGCCTTCACTGCATGGAGCGGACACTCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1589942 111 + 5364348 CATAGTCACTGGGTGTCTGT-C-----CCCCACCCCACCCCTGCCCTGAGCAGGCACTGGGGCCGATCAGCAGTGACACAGGC-AGGCGGGGCCTTCACTGCATGGAGCTGACACTCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4313479 71 + 7922563 --------------GTCTGT-C------------------------------ATCACTGGGGCATACTGGTCATGAGGCAGGC-AGGCAGCATC-TCACTGCACAGAGCCAATGGCCT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33166718 104 - 38964690 ggtagtctttgggtgcctac-c-----acacaccc-------accctgtgctggcactggggctgagcagcaatgaaccaggc-aggcagagtcttcactacattcaactgacactct i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 848446 86 - 1116856 --TAGCCACAGGCCgaccct-c----------------tgctggcct------------gggctgagcagcagcaaaccaggc-aggcaaggtctttaccagacggagccgatagttt i dasNov3.JH568189 C 0 I 784 e micMur3.chr21 9475026 243 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6727564 383 - 9870158 I a score=33606.000000 s hg38.chr12_KI270834v1_alt 80598 10 + 119498 -------------GT-------------TTTCCTAT s panTro5.chr12 127366599 10 + 137163284 -------------GT-------------TTTCCTAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125717630 10 + 135337776 -------------GT-------------TTTCCTAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8230994 10 - 8369578 -------------GT-------------TTTCCTAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97889269 10 + 106955855 -------------GT-------------TTTCCTAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004099 10 + 133663169 -------------GT-------------TTTCCTAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128252200 10 + 137757926 -------------GT-------------TTTCCTAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10650786 10 - 16319837 -------------GT-------------TTTCCTAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12274451 10 + 20526591 -------------GT-------------TTTCCTAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119246205 10 + 128539186 -------------GT-------------TTTCCTCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 588309 10 + 6255621 -------------GT-------------TTTCCTAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4623668 10 - 8658521 -------------GT-------------TTTCCTAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114823979 12 + 124281992 -------------gg-----------ttttttaaat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 468529 23 - 9212255 -------------GGCttttttttttttttttttat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2887472 18 + 4466143 -------------GT-----TTTTTTTTTTTTTTAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1590053 11 + 5364348 -------------GG------------TTTTTTAAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4313550 5 + 7922563 -------------GT-------------TT-----C i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33166822 23 - 38964690 caggaaggcacaggc-------------aTTCATTC i canFam3.chr26 C 0 C 0 e micMur3.chr21 9475026 243 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6727564 383 - 9870158 I e dasNov3.JH568189 848532 784 - 1116856 I a score=333997.000000 s hg38.chr12_KI270834v1_alt 80608 36 + 119498 AGGAATCCCATGTGCATGGGGAAATTA-------------------------------------------------------------------TGTAGGATT s panTro5.chr12 127366609 36 + 137163284 AGGAATCCCATGTGCATGGGGAAATTA-------------------------------------------------------------------TGTAGGATT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125717640 36 + 135337776 AGGAATCCCATGTGCATGGGGAAATTA-------------------------------------------------------------------TGTAGGATT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231004 36 - 8369578 AGGAATCCCATGTGCATGGGGAAATTA-------------------------------------------------------------------TGTAGGATT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97889279 36 + 106955855 AGGAATCCCATGTGCATGGGGAAATGA-------------------------------------------------------------------TGTAGGATT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004109 36 + 133663169 AGGAATCCCATGTGCATGGGGAAATGA-------------------------------------------------------------------TGTAGGATT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128252210 36 + 137757926 AGGAATCCCATGTGCATGGGGAAATGA-------------------------------------------------------------------TGTAGGATT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10650796 36 - 16319837 AGGAATCCCATGTGCATGGGGAAATGA-------------------------------------------------------------------TGTAGGATT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12274461 36 + 20526591 AGGAATCCCATGTGCATGGGGAAATGA-------------------------------------------------------------------TGTAGGATT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119246215 36 + 128539186 AGGAATCCCATGTGCATGGGGAAATGA-------------------------------------------------------------------TGTAGGATT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 588319 36 + 6255621 AGGAATCCCATGTGCATGGGGAAATGA-------------------------------------------------------------------TGTAGGATT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4623678 36 - 8658521 AGGAATCCCATGTGCATGGGGAAATGA-------------------------------------------------------------------TGTAGGATT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114823991 36 + 124281992 tggaatcccacatgtatgtagaaatga-------------------------------------------------------------------tttaggatt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 468552 36 - 9212255 tGGAAGCCCACGTGTATGTAAAAATGA-------------------------------------------------------------------TTTAGGATT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2887490 36 + 4466143 TGGAATCCCACGTGTATATAGAAATGA-------------------------------------------------------------------TTTAGGATG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1590064 36 + 5364348 TGGAATCCCACATGTATGTAGAAATGA-------------------------------------------------------------------TTTAGGATT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4313555 20 + 7922563 AGGAGTCCCGTGTGT-----------------------------------------------------------------------------------GGTTT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33166845 103 - 38964690 AGGAATCCCATATGTTCAGTAAAATCACCCAAAAAGTTAGACGAGAAGGTCTTTGCTGCCATGACTGTAGATAATGGGGGAACTTAACCTAGTCTGGAGGATG i canFam3.chr26 C 0 I 3 s dasNov3.JH568189 849316 29 - 1116856 AGGAATCTCAGGT-------AAAATGA-------------------------------------------------------------------TATAGGAGA i dasNov3.JH568189 I 784 C 0 e micMur3.chr21 9475026 243 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6727564 383 - 9870158 I a score=422586.000000 s hg38.chr12_KI270834v1_alt 80644 38 + 119498 AGGTTAGGAAGG-----------------------------------------------------------AAAGGT--CCTTGCTGCTCTGACA-GTGG s panTro5.chr12 127366645 38 + 137163284 AGGTTAGGAAGG-----------------------------------------------------------AAAGGT--CCTTGCTGCTCTGACA-GTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125717676 38 + 135337776 AGGTTAGGAAGG-----------------------------------------------------------AAAGGT--CCTTGCTGCTCTGACA-GTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231040 38 - 8369578 AGGTTAGGAAGG-----------------------------------------------------------AAAGGT--CCTTGCTGCTCTGACA-GTGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97889315 38 + 106955855 AGGTTAGGAAGG-----------------------------------------------------------AAAGGC--CCTTACTGCTCCGACA-GTGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004145 38 + 133663169 AGGTTAGGAAGG-----------------------------------------------------------AAAGGT--CCTTGCTGCTCTGACA-GTGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128252246 38 + 137757926 AGGTTAGGAAGG-----------------------------------------------------------AAAGGT--CCTTGCTGCTCTGACA-GTGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10650832 38 - 16319837 AGGTTAGGAAGG-----------------------------------------------------------AAAGGT--CCTTGCTGCTCTGACA-GTGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12274497 38 + 20526591 AGGTTAGGAAGG-----------------------------------------------------------AAAGGT--CCTTGCTGCTCTGACA-GTGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119246251 38 + 128539186 AGGTTAGGAAGG-----------------------------------------------------------AAAGGT--CCTTGCTGCTCTGACA-GTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 588355 38 + 6255621 AGGTTAGGAAGG-----------------------------------------------------------AAAGGT--CCTTGCTGCTCTGACA-GTGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4623714 38 - 8658521 AGGTTAGGAAGG-----------------------------------------------------------AAAGGT--CCTTGCTGCTCAGACA-GTGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114824027 36 + 124281992 a-gtcagaaggg-----------------------------------------------------------aaaggt---cttgctgctccgaca-gtgg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 468588 36 - 9212255 A-GTCAGAAAGG-----------------------------------------------------------AAAGGT---CTTGCTGCTCCCACG-GTGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2887526 36 + 4466143 A-GTCAGAAAGG-----------------------------------------------------------AAAGGT---CTTGCTGCTCCGACA-GTGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1590100 36 + 5364348 C-ATCAGAAAGG-----------------------------------------------------------AAAGGT---CTTGCTGCTCCGACA-GTGG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6727947 38 - 9870158 AGGTCAGGAGGG-----------------------------------------------------------AAAGGT--CCTGGCTGCTCTGGCA-GTGG i proCoq1.NW_012154285v1 I 383 I 159 s otoGar3.GL873618 4313575 32 + 7922563 --ATTAGGAAGG-----------------------------------------------------------AAGAGT--CTTTGC----CTGTTA-GTGG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33166951 100 - 38964690 GGCTGAGGAAGGTATTCCTCAGGAATGACatttattttttatttatttaatttttttGACATTTAttttttaaaggtttctttatttatttgagaggtgg i canFam3.chr26 I 3 I 44 s dasNov3.JH568189 849345 38 - 1116856 GGGTTCAGAAGG-----------------------------------------------------------AAAGAT--CCTTGCTGCTATGACT-GTGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9475026 243 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I a score=209369.000000 s hg38.chr12_KI270834v1_alt 80682 28 + 119498 -ATGTTGGGACCTGA-----------------------------------C------------------------------CTAGTCATGGTCA----------------------------------- s panTro5.chr12 127366683 28 + 137163284 -ATGTTGGGACCTGA-----------------------------------T------------------------------CTAGTCATGGTCA----------------------------------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125717714 28 + 135337776 -ATGTTGGGACCTGA-----------------------------------C------------------------------CTAGTCATGGTCA----------------------------------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231078 28 - 8369578 -ATGTTGGGACCTGA-----------------------------------C------------------------------CTAGTCATGGTCA----------------------------------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97889353 7 + 106955855 ---------------------------------------------------------------------------------------ATGGTCA----------------------------------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004183 28 + 133663169 -ATGTTGGGACCTGA-----------------------------------C------------------------------CTAGTCATGGTCA----------------------------------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128252284 28 + 137757926 -ATGTTGGGACCTGA-----------------------------------C------------------------------CTAGTCATGGTCA----------------------------------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10650870 28 - 16319837 -ATGTTGGGACCTGA-----------------------------------C------------------------------CTAGTCATGGTCA----------------------------------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12274535 28 + 20526591 -ATGTTGGGACCTGA-----------------------------------C------------------------------CTAGTCATGGTCA----------------------------------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119246289 28 + 128539186 -ATGTTGGGACCTGA-----------------------------------C------------------------------CTAGTCATGGTCA----------------------------------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 588393 28 + 6255621 -ATGTTGGGACCTGA-----------------------------------C------------------------------CTAGTCATGGTCA----------------------------------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4623752 28 - 8658521 -ATGTTGGGACCTGA-----------------------------------C------------------------------CTAGTCATGGTCG----------------------------------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114824063 28 + 124281992 -atggtggggcctga-----------------------------------c------------------------------ctagtcatggtca----------------------------------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 468624 28 - 9212255 -ATGGTGGGGCCTGA-----------------------------------C------------------------------CTAGTCATGGTCA----------------------------------- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2887562 28 + 4466143 -CTGGTGGGGCCTGA-----------------------------------C------------------------------CTCGTCATGGTCA----------------------------------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1590136 28 + 5364348 -ATGATGGGGCCTGA-----------------------------------C------------------------------CTAGTCATGGTCA----------------------------------- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4313607 28 + 7922563 -ACAACATGGACTGA-----------------------------------C------------------------------CTAGTCCTGATCA----------------------------------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33167095 63 - 38964690 -aggttggagcctgatgcagggcttgatcccaggaccctgagattacgacc------------------------------tgagccaaaatca----------------------------------- i canFam3.chr26 I 44 I 112 s dasNov3.JH568189 849383 94 - 1116856 ATTGTGGGGGCCTGA-----------------------------------CAGGGAAAGCGATCCCCCAGGAAGCAACATTCCAGCTGAGACAAGCCTGGAGAGTGGGGAGTTGGCAGCTGCAGGATGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9475026 243 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6727985 159 - 9870158 I a score=1453680.000000 s hg38.chr12_KI270834v1_alt 80710 152 + 119498 TGGAGGGCGGAGGGGGCACCTTCTCTGAGATTGCAAGGAGCTCGGCTGGA-GAAAAAGCAGAGACAGC-TGGTGTGTCAGGGGTAGAGTACTGGGAGGTGGGGAGTGGGG-TTTATAAGGATTATTTTCCTCTAGGGAGGGTAGCATATCATTCT s panTro5.chr12 127366711 152 + 137163284 CAGAGGGCGGAGGGGGCACCTTCTCTGAGATTGCAAGGAGCTCGGCTGGA-GAAAAAGCAGAGACAGC-TGGTGTGTCAGGGGTAGAGTACTGGGAGGTGGGGAGTGGGG-TTTATAATGATTATTTTCCTCTAGGGAGGGTAGCATAACATTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125717742 152 + 135337776 CAGAGGGCGGAGGGGGCACCTTCTCTGAGATTGCAAGGAGCTCGGCTGGA-GAAAAAGCAGAGACAGC-TGGTGTGTCAGGTGTAGAGTACTGGGAGGTGGGGAGTGGGG-TTTATAATGATTATTTTCCTCTAGGGAGGGTAGCATAACATTCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231106 151 - 8369578 TGGAGGGCGGAGGGGGCACCTTCTCTGAGATTGCAAGGAGCTCGGCTGGA-GAAAAAGCAGAGACAGC-TGGTATGTCAGG-GTAGAGTACTGGGAGGTGGGGAGTGGGG-TTTATAATGATTATTTTCCTCTAGGGAGGGTAGCATATCATTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97889360 153 + 106955855 TGAAGGGC-GAGGGGGCACGTTCTTTGAGACTGCAAGGAGCTCGGCTGGA-GAAAAAGCAGAGACAGCTTGGTGTGTCAGGGGTAGAGTACTGGGAGGTGGGGAGTGGGGTTTTAAAATGATTATTTTCTTCTAGGGAGGGTAGCATATCATTCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004211 152 + 133663169 TGGAGGGTGGAGGGGGCAGCTTCTCTGAGGCTGCAAGGAGCTCGGCTGGA-GAAAGAGCAGAGACAGC-TGCTGTGTCAGGGGTAGAGCGCTGGGAGGCGGGGAGTGGGG-CTTAAAATGATTATTTTCTTCTAGGGAGGGTAGCATATCATTCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128252312 152 + 137757926 TGGAGGGTGGAGGGGGCAGCTTCTCTGAGGCTGCAAGGAGCTCAGCTGGA-GAAAGAGCAGAGACAGC-TGCTGTGTCAGGGGTAGAGCGCTGGGAGGCGGGGAGTGGGG-CTTAAAATGATTATTTTCTTCTAGGGAGGGTAGCATATCATTCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10650898 152 - 16319837 TGGAGGGTGGAGGGGGCAGCTTCTCTGAGGCTGCAAGGAGCTCGGCTGGA-GAAAGAGCAGAGACAGC-TGCTGTGTCAGGGGTAGAGCGCTGGGAGGCGGGGAGTGGGG-CTTAAAATGATTATTTTCTTCGAGGGAGGGTAGCATATCATTCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12274563 152 + 20526591 TGGAGGGTGGAGGGGGCAGCTTCTCTGAGGCTGCAAGGAGCTCGGCTGGA-GAAAGAGCAGAGACAGC-TGCTGTGTCAGGGGTAGAGCACTGGGAGGCGGGGAGTGGGG-CTTAAAATGATTATTTTCTTCTAGGGAGGGTAGCATATCATTCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119246317 152 + 128539186 TGGAGGGTGGAGGGGGCACCTTCTCTGAGGCTGCAAGGAGCTCGGCTGGA-GAAAGAGCAGAGACAGC-TGGTGTGTCAGGGGTAGAGCGCTGGGAGGCGGGGAGTGAGG-CTTAAAATGATTATTTTCTTCTAGGGAGGGTAGCATATCATTCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 588421 152 + 6255621 TGGAGGGTGGAGGGGGCAGCTTCTCTGAGGCTGCAAGGAGCTCGGCTGGA-GAAAGAGCAGAGACAGC-TGCTGTGTCAGGGGTAGAGCGCTGGGAGGCGGGGAGTGGGG-CTTAAAATGATTATTTTCCTCTAGGGAGGGTAGCATATCATTCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4623780 152 - 8658521 TGGCAGGTGGAGGGGACACCTTCTCTGAGGCTGCAAGGAGCTCGGCTGGA-GAAAAAGCAGAGACAGC-TGCCGTGTCAGGGGTAGAGCGCTGGGAGGCGGGGAGTAGGG-TTTAAAATGATTATTTTCTTCTAGGGAGGGTAGCATATCATTCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114824091 151 + 124281992 tggagggcGGAGGG--CACCTTCCCCGAGGCTGCAAGGAGCTCGGCTGGAGGAAAAAGCAGAGGCCGT-CGGTGTGTCTGGGGTGGAGTACTGGGAGCTGGGGAGTGGGG-CTTCTAATGATCGTTTTCTTCTAGGAAGGGTAGCATATCATTCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 468652 137 - 9212255 TGGAGGGCCGAGGG--CACCTTCCCCGAGGCTGCA--------------AGGAAAAAGTGGAGGCCAT-TGGTGTGTCTGGGGTAGAGTGCTGGGAGCTGGGGAGTGGGG-CTTATAATGATCGTTTTCTTCTAGGAAGGGTAGCGTATCATTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2887590 146 + 4466143 TGGAGGGTGGAGGG--CACCTT-CCCGAGGCTGCAAGGAGCTCAGCTAGAGGGAAAAGCGGAGGCCGC-TGGTGTGTCTGGGGTAGAGTACGGGAGGCTGGGGAGTGGGG-CTTATAATGATCGTTGTCTTCTAGGAAGGGTAGCGTATCA---- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1590164 151 + 5364348 TGGAGGGCGGAGGG--CACCTTCCCCGAGGCTGCAAGGAGCTCGCCTGGAGGCAAAAGCGGAGGCCGC-TGGTGTGTCTGGGGTAGAGTACTGGGAGCTGGGGAGTGGGG-CTTATAATGATCGTTTTCTTCTGGGAAGGGTAGCATATCATTTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4313635 85 + 7922563 TGGAGGTCAGAGGGG--------------------------TGGCCTGAG-AGAAAAGCATGGATAGT-TGTTGTGTCCAGGGTGGAGCAGTAGGAG-----------GG-C----AATG--TATTTTCTT------------------------ i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33167270 146 - 38964690 tagaggttggaggggggaag-gctctgaggctggaaggagcttgggccaagggaaaagcagacagaga-------gtctgggttagagtgagagaaggtagggagtgtgg-tttgtgataaTTCTTCCCCTCCAGGGAGGACAGCATCTTatcat i canFam3.chr26 I 112 I 26 s dasNov3.JH568189 849477 131 - 1116856 GGGAGGCTGGCGAGGACACCTCCCC--AGGGCGGAGGGAGCGTGGCTTGAGGAAGGATCAGAGAT----CAGCGTGGCTGGGTTAG---------------GCGGTGGGG-C-TAGAGAGGTTACTTCCGTC-AGGGAGGGCAGCCTGCCATCAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9475026 243 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6727985 159 - 9870158 I a score=53766.000000 s hg38.chr12_KI270834v1_alt 80862 5 + 119498 CCCTT---- s panTro5.chr12 127366863 5 + 137163284 CCCTT---- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125717894 5 + 135337776 CCCTT---- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231257 5 - 8369578 CCCTT---- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97889513 5 + 106955855 CCCTT---- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004363 5 + 133663169 CCCTT---- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128252464 5 + 137757926 CCCTT---- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10651050 5 - 16319837 CCCTT---- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12274715 5 + 20526591 CCCTT---- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119246469 5 + 128539186 CCCTT---- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 588573 5 + 6255621 CCCTT---- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4623932 5 - 8658521 CCCTT---- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114824242 5 + 124281992 CTCTT---- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 468789 5 - 9212255 CTCTC---- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2887736 5 + 4466143 CTGTC---- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1590315 5 + 5364348 CTCTT---- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9475269 5 - 31815103 CCCTC---- i micMur3.chr21 I 243 C 0 s otoGar3.GL873618 4313720 5 + 7922563 TTCTT---- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33167442 5 - 38964690 CTCTC---- i canFam3.chr26 I 26 C 0 s dasNov3.JH568189 849608 9 - 1116856 CTCTCGTGC i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6727985 159 - 9870158 I a score=546255.000000 s hg38.chr12_KI270834v1_alt 80867 40 + 119498 TCT----CATT---CCTGAGTTTGTTTTGTGATAGAAGAAAGGAATC s panTro5.chr12 127366868 40 + 137163284 TCT----CATT---CCTGAGTTTGTTTTGTGATAGAAGAAAGGAATC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125717899 40 + 135337776 TCT----CATT---CCTGAGTTTGTTTTGTGATAGAAGAAAGGAATC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231262 40 - 8369578 TCT----CATT---CCTGAGTTTGTTTTGTCATAGAAGAAAGGAATC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97889518 40 + 106955855 TCT----CATG---CCTGAGTTTGTTTGGTGATAGAAGAAAGGAATC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004368 40 + 133663169 TCT----CATT---CCCAAGTTTGTTTGGTGATAGAAGAAAGGAATC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128252469 40 + 137757926 TCT----CATT---CCCAAGTTTGTTTGGTGATAGAAGAAAGGAATC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10651055 40 - 16319837 TCT----CATT---CCCAAGTTTGTTTGGTGATAGAAGAAAGGAATC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12274720 40 + 20526591 TCT----CATT---CCCAAGTTTGTTTGGTGATAGAAGAAAGGAATC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119246474 40 + 128539186 TCT----CATT---CCCAAGTTTGTCTGGTGATAGAAGAAAGGAATC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 588578 40 + 6255621 TCT----CATT---CCCAAGTTTGTTTGGTGATAGAAGAAAGGAATC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4623937 40 - 8658521 TCT----CATT---CCCAAGTTTGTTTAGCGATGGAAGAAAGGAATC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114824247 36 + 124281992 TCT----CATT---CCCGAGTTTGTTTGGTGATGGAAGAAAGG---- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 468794 36 - 9212255 TCT----CATT---CCCGAGTTTGGTTGGTGATAGAAGAAAGG---- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2887741 32 + 4466143 TCT----CATT---CCCGAGT----TTGGTGATAGAAGAAAGG---- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1590320 36 + 5364348 TCT----CATT---CCCGAGTTTGTTTGGTGATAGAAGAAAGG---- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9475274 40 - 31815103 TCT----CATC---CCTGGGTTTATTTTGTGATAGAAGACAGGAATC i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6728144 40 - 9870158 TCT----CATC---CCTGAGTTTATCTTGCGATAGAAGAAAGGAATC i proCoq1.NW_012154285v1 I 159 I 158 s otoGar3.GL873618 4313725 40 + 7922563 TCT----CTTC---CCTGAGTGTGTTCTGTGATAGAAAAAGGGAATC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33167447 42 - 38964690 TCTCACACACA---CCTGAGTTTGTTTTGTGATAAGAGAAAGGAA-- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 849617 43 - 1116856 TCT----CTTTTAATCTGAGTCTGTTTGGTCATAGAAGAAAGGAACC i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124813998 360 + 151834684 I a score=106683.000000 s hg38.chr12_KI270834v1_alt 80907 9 + 119498 AAATTAAAC s panTro5.chr12 127366908 9 + 137163284 AAATTAAAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125717939 9 + 135337776 AAATTAAAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231302 9 - 8369578 AAATTAAAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97889558 9 + 106955855 AAATTAAAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004408 9 + 133663169 AAATTAAAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128252509 9 + 137757926 AAATTAAAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10651095 9 - 16319837 AAATTAAAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12274760 9 + 20526591 AAATTAAAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119246514 9 + 128539186 AAATTAAAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 588618 9 + 6255621 AAATTAAAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4623977 9 - 8658521 AAATTAAAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114824283 8 + 124281992 -AATGGAAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 468830 8 - 9212255 -AATGGAAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2887773 8 + 4466143 -AGTGGAAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1590356 8 + 5364348 -AATGGAAC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9475314 9 - 31815103 CAGTGAAGC i micMur3.chr21 C 0 I 95 s otoGar3.GL873618 4313765 9 + 7922563 AAATGAAAC i otoGar3.GL873618 C 0 I 2 s canFam3.chr26 33167489 7 - 38964690 --ATGAAAC i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 849660 9 - 1116856 AAATGAAAC i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728184 158 - 9870158 I a score=959113.000000 s hg38.chr12_KI270834v1_alt 80916 93 + 119498 --AGACATCTCCCTTTCTCTTGACTTGCACCCTCCACATTTCACACACCTTGGTCATCCGGCATTG-TGGAAAGTGGTATGTTCTGGATAAGTGAG s panTro5.chr12 127366917 93 + 137163284 --AGACATCTCCCTTTCTCTTGACTTGCAACCTCGACATTTCACACACCTTGGTCATCCGGCATTG-TGGAAAGTGGTGTGTTCTGGATAAGTGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125717948 93 + 135337776 --AGACATCTCCCTTTCTCTTGACTTGCAACCTCGACATTTCACACACCTTGGTCATCCGGCATTG-TGGAAAGTGGTGTGTTCTGGATAAGTGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231311 93 - 8369578 --AGACATCTCCCTTTCTCTTGACTTGCAACCTCGACATTTCACACACCTTGGTCATCCGGCATTG-TGGAAAGTGGTGTGTTCTGGATAAGTGAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97889567 93 + 106955855 --AGACATCTCCATTTCTCTTGACTTGCAACCTCAATATTTCACACACCTCGATCATCCGGCATGG-TGGAAAGTGGTGTATTCTGGGTAAGTGAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004417 93 + 133663169 --AGACATCTCCATTTCTCTTGACTTGGAACCTCGATATTTCACACACCTCGGTCATCCGGCATTG-TGGAAAGTGGTGTGTTCTCGATAAGTGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128252518 93 + 137757926 --AGACATCTCCATTTCTCTTGACTTGCAACCTCGATATTTCACACACCTCGGTCATCCGGCATTG-TGGAAAGTGGTGTGTTCTCGATAAGTGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10651104 93 - 16319837 --AGACATCTCCATTTCTCTTGACTTGCAACCTCGATATTTCACACACCTCGGTCATCCGGCATTG-TGGAAAGTGGTGTGTTCTTGATAAGTGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12274769 93 + 20526591 --AGACATCTCCATTTCTCTTGACTTGCACCCTCAATATTTCACACACCTCGGTCATCCGGCATTG-TGGAAAGTGGTGTGTTCTCGATAAGTGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119246523 93 + 128539186 --AGACATCTCCATTTCTCTTGGCTTGCAACCTCAATATTTCACACACCTCAGTCATCCGGCATTG-TGGAAAGTGGTGTGTTCTCGATAAGTGAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 588627 93 + 6255621 --AGACATCTCCATTTCTCTTGACTTGCACCCTCAATATTTCACACAGCTCGGTCATCCGGCATTG-TGGAAAGTGGTGTGTTCTCGATAAGTGAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4623986 93 - 8658521 --AGACATCTCCATTTCTCTTGTCTTGCAACCTCAATATTTCACACACCTCGGTCATCCGGCATTG-TGGAAAGTGGTGTGTTCTCAATAAGTGAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114824291 93 + 124281992 --AGACATCTCCATTTCTCTGGACTTGCAATCTCAGTATTTCAAAGGCCTTGCTCGCCCGGCACTG-TGGAAAGTGCCGTGTTCTGGGAAAGTGAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 468838 90 - 9212255 --AGACATCTCCATTTCTCTGGACTTGAAATCTCAATATTTCAAAGACCTCGCTCGCCCGGCACCG-TGGAAAGTGCCGTGTTCTGGGAAAGT--- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2887781 93 + 4466143 --AGACATCTCCATTTCTCTGGACTTGCAATCTCAATATTTCAAAGGCCTGGCTCGCCCAGCACCG-TGGAAAGTGCCGTGTTCTGGGAAAGTGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1590364 75 + 5364348 --AGACATCTCCATTTCCCTGGACTTGCAATCTCAATATTTCAAAGGCCTCGCTCGCCCGGCACTG-TGAAAAGTG------------------AG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4313776 92 + 7922563 --AGACATCTCTATTTCT-TTGACTTGCAACTGCCATATTTCAAACACCCCTCTTATCTGGTACTG-GGGACTGCCCTGGTTTCTGGATAAGTAAG i otoGar3.GL873618 I 2 C 0 s canFam3.chr26 33167498 90 - 38964690 --AAACGTTTCTATTTCCC-AGACTGACAGCCTCAAGATTATTAACACTTCAGTTATCCCGTGTTA-TG-ACAGTGATATGTGTTGG-TAAACATG i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 849669 95 - 1116856 AGAGATGCCTCCGTTTCTC-AAACCTGCAGTCGCAGTGTTTTTAACAACTCAGTCACCCAGCCCTGCTGGAAAGGGCTGCCTTGGGGATAAATGAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9475323 95 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728184 158 - 9870158 I a score=619746.000000 s hg38.chr12_KI270834v1_alt 81009 56 + 119498 ATCCCAGAGCGTGGCCTGCAACC---CAACAGCAGAAAACGTCACTTTGGtagactcag s panTro5.chr12 127367010 56 + 137163284 ATCCCAGAGCGTGGCCTGTAACC---CAACAGCAGAAAACGTCACTTTGGtagactcag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718041 56 + 135337776 ATCCCAGAGCGTGGTCTGTAACC---CAACAGCAGAAAACGTCACTttggtagactcag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231404 56 - 8369578 ATCCCAGAGTGTGGCCTGTAACC---CAACAGCAGAAAACGTCACTTTGGtagactcag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97889660 56 + 106955855 ATCCCAGAGCGTGGCCTGTAACC---CAACAGCGGAAAACTTCACTTtcgtagactcag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004510 56 + 133663169 ATCCCAGAGCGTGGCCTGTGACA---CAACAGCAGAAAacttcactttcatagactcag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128252611 56 + 137757926 ATCCCAGAGCGTGGCCTGTGACA---CAACAGCAGAAAACTTCACTTTCATAGACTCAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10651197 56 - 16319837 ATCCCAGAGCGTGGCCTGTAACA---CAACAGCAGAAAacttcactttcatagactcag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12274862 56 + 20526591 ATCCCAGAGCGTGGCCTGTAACA---CAACAGCAGAAAAATTCACTTtcatagactcag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119246616 56 + 128539186 ATCCCAGAGCGTGGCCTGTAACA---CAACAGCAGAAAACTTCACTTTCATAGACTCAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 588720 56 + 6255621 ATCCCAGAGCGTGGCCTGTAACA---CAACAGCAGAAAACTTCACTTtcatagactcag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4624079 59 - 8658521 ATCCCAGAGCGTGGCCTGTAACACAGCAGCAGCAGAAGACTTCACTTtcatagactcag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114824384 55 + 124281992 ATCCCAGAGCGTGGCCTGTAACC---CAGTAGCCGAAAGCTTCACTT-GGTGGACTCAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 468928 47 - 9212255 ------GAGCGTGGCCTGTAACC---CAATAGCCGAAAGCTTCACTT-GGTGGACTC-- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2887874 55 + 4466143 ATCCCAGAGCGTGGCCTGTAACC---CAATAGCCGAAAGCTTCACTT-GGTGGACTCAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1590439 54 + 5364348 ATCCCAGAGCGTGGCCTGTAACC---CAATAGCCAAAAGCTTCACTT--GTGGACTCAG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9475418 56 - 31815103 GTCCCAGGGCACGGTCTGTAAGC---TGACAGCAGAGAACTTCTCTTTTACTGACAcac i micMur3.chr21 I 95 C 0 s otoGar3.GL873618 4313868 56 + 7922563 GTTCCAAGGCTTGGTCTGTAAGC---TGATAGCAGAGAACTTCACTTTCATAGACACAC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33167588 56 - 38964690 GTTCTAGGTCCTAGTTTGTAAGC---TGATAGCAGAGAACTTCACTTtcacagactcac i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 849764 41 - 1116856 GTTTCAGAGCCTGGTCGGCAGGC---CT-TGGAGGAGAACTTCAC-------------- i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728184 158 - 9870158 I a score=2942548.000000 s hg38.chr12_KI270834v1_alt 81065 227 + 119498 aggatttgggaactggaaggttccagttctgcg-tctctacttcacagatggggaaactgacg-ccctggctggttcctaacttgcccaagggctcaGGACCCCGC--CGCAGGCC--TGGGCT-CCTTCTGTCTTGAATCTGAAAACATCTCCCCCATTCTTTCCCCACCTGCTTGT-TCACAGAGCGGTGGCCGGGGCCTGGTTTCCATCCACCCTGA--AGG-GACCTTTTAAAG s panTro5.chr12 127367066 227 + 137163284 aggatttgggaactggaaggttccagttctgcg-tctctacttcacagatggggaaactgacg-ccctggctggttcctaacttgcccaaggGCTCAGGACCCCGC--GACAGGCC--TGGGCT-CCTTCTGTCTTGAATCTGAAAACATCTCCCCAATTCTTTCCCCACCTGCTTGT-TCACAGAGCAGTGGCCGGGGCCTGGTTTCCATCCACCCTGA--AGG-GACCTTTTAAAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718097 227 + 135337776 aggatttgggaactggaaggttccagttctgcg-tctctacttcacagatggggaaactgacg-ccctggctggttcctaacttgcccaagggctcaggaccccgc--gacaggcc--tgggCT-CCTTCTGTCTTGAATCTGAAAACATCTCCCCCATTCTTTCCCCACCTGCTTGT-TCACAGAGCAGTGGCCGGGGCCTGGTTTCCATCCACCCTGA--AGG-GACCTTTTAAAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231460 227 - 8369578 aggatttgggaactggaaggttccagttctgcg-tctctacttcacagatggggaaactgacg-ccctggctggttcctaacttgcccaaggGCTCAGGACCCCGC--CGCAGGCC--TGGGCT-CCTTCTGTCTTGAATCTGAAAACATCTCCCCCATTCTTTCCCCACCTGCTTGT-TCACAGAGCAGTGGCCGGGGCCTGGTTTCCATCCACCCTGA--AGG-GACCTTTTAAAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97889716 227 + 106955855 aggatttgggaactggaaggttccggttctgcg-tctctactttacagatgggaaaactgaca-ccctggctggttcctaacttgcccaagggctcaGTACCCTGC--CTCAGGCC--TGGGCT-CTTCCTGTCTTGAATCTGAAAACATCTCCCCCATTCTTTCCCCACCTGCTTGT-TCACAGAGCAGTGGCCGGGGCCTGGTTTCCATCCACCCTGA--AGG-GACCTTTTAAAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004566 228 + 133663169 aggatttgggaactggaagggtctggttctgtg-tctctactttacagatgggaaaactgacacccctggctggttcctaacttgcccgaggGCTCAGGACCCCGC--CTCAGGCC--TGGGCT-CTTTCTGTCTTGAATCTGAAAACATCTCCCCCATTCTTTCCCTACCTGCTTGT-TCACAGAGCAGTGGCTAGGGCCTGGCTTCCATCCACCCTGA--AGG-AACCTTTTAAAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128252667 228 + 137757926 AGGATTTGGGAACTGGAAGGGTCTGGTTCTGtg-tctctactttacagatgggaaaactgacacccctggctggttcctaacttgcccgaggGCTCAGGACCCCGC--CTCAGGCC--TGGGCT-CTTTCTGTCTTGAATCTGAAAACATCTCCCCCATTCTTTCCCTACCTGCTTGT-TCACAGAGCAGTGGCTAGGGCCTGGCTTCCATCCACCCTGA--AGG-AACCTTTTAAAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10651253 228 - 16319837 aggatttgggaactggaagggtctggttctgtg-tctctactttacagatgggaaaactgacacccctggctggttcctaacttgcccgagggctcaGGACCCCGC--CTCAGGCC--TGGGCT-CTTTCTGTCTTGAATCTGAAAACATCTCCCCCATTCTTTCCCTACCTGCTTGT-TCACAGAGCAGTGGCTAGGGCCTGGTTTCCATCCACCCTGA--AGG-AACCTTTTAAAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12274918 228 + 20526591 aggatttgggaactggaagggtctggttctgtg-tctctactttacagatgggaaaactgacacccctggctggttcctaacttgcccaagggctcaGGACCCCGC--CTCAGGCC--TGGGCT-CTTTCTGTCTTGAATCTGAAAACATCTCCCCCATTCTTTCCCTACCTGCTTGT-TCACAGAGCAGTGGCTGGGGCCTGGTTTCCATCCACCCTGA--AGG-AACCTTTTAAAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119246672 228 + 128539186 AGGATTTGGGAACTGGAAGGGTCTGGTTCTGTG-TCTGTACTGTACAGATGGGAAAACTGACACCCCTGGCTCGTTCCTAACTTGCCCAAGGGCTCAGGACCCCGC--CTCAGGCC--TGGGCT-CTTTCTGTCTTGAATCTGAAAACATCTCCCCCATTCTTTCCCTACCTGTTTGT-TCACAGAGCAGTGGCTGGGGCCTGGTTTCCATCCACCCTGA--AGG-AACCTTTTAAAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 588776 228 + 6255621 aggatttgggaactggaagggtctggttctgtg-tctctgctttacagatgggaaaactgacacccctggctggttcctaacttgcccaagggctcaGGACCCCGC--CTCAGGCC--TGGGCT-CTTTCTGTCTTGAATCTGAAAACATCTCCCCCATTCTTTCCCTACCTGCTTGT-TCACAGAGCAGTGGCTGGGGCCTGGTTTCCATCCACCCTGA--AGG-AACCTTTTAAAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4624138 227 - 8658521 aggatttgggaactggaagggtctggttctgtg-tctc-actttacagatgggaaagccgacacccctggctggctcctaacttgcccaagggctcaGGACCCTGC--CTGAGGCC--CGGGCT-CTTTCTGTCTGGAACCTGAAAACATCTCCCCCATTCTTTCCCTACCTGCTTGT-TCACAGAGCAGTGGCTGGGGCCTGGTTTCCACCCACCCTGA--AGG-AACCTTTTAAAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114824439 226 + 124281992 AGGATTTGGGAGCTGGAAGGTTCCGGATCTGCG-tccctactttacagatgcgaaacccgacaaccccggctggttcctaacttgcccaagggctcaGGACCCCGC--CTCCGGCC--TGGGCT-CTTTCTGTCTTGTAGCTGAAAACATCTCCCTCA-TCCTTCCCCAGCTGCTTGT-TCACAGAGCAGTGGTG-GGGCCTGGTTTCCATCGGCCCTGA--AGG-GACCTTTTAAAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 468975 193 - 9212255 AGGATTTTGGAGCTGGAAGGTTCTGGATCTGTG-TCCCTACTTTACAGATGCAAAACCCG---ACCCCGGCTGGTTCCTAACTTGCCCAAGGGCTCAGGACCCCGC--CTCT-GCC--TGGGCT------------------------------CTCA-TCCTTCCGCAGCTGCTTGT-TCACAGAGCAGTGGCT-GGACCTGGTTTCCACTGGCCCTGA--AGG-GACCTTTTAAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2887929 217 + 4466143 AGGATTTGGGAGCTGGAAGGTTCCGGATCTGCG-TCCCTACTTCACAGAT-------CCGACAACTCC-ACTGGTTCCTAACTTGCCTAAGGGCTCAGGACCCCGC--CTCT-GCC--TGGGCT-CTTTCTGTCTTGTAGCTGAAAACATCTCCCTCA-TCCTTCCCCAGCTGCTTGT-TCACAGAGCAGTGGCC-GGGCCTGGTTTCCACTGGCCCTGA--AGG-GACCTTTTAAAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1590493 225 + 5364348 AGGATTTGGGAGCTGGAAGGTTCGGGATCTGCG-TCCCTACTTTACAGATGCGAAACCCAACAACCCCAGCTGGTTCCTAACTTGCC-AAGGGCTCAGGACCCCGC--CTCCGGCC--TGGGCT-CTTTCTGTCTTATAGCTGAAAACATGTCCCTCA-TCCTTCCCCAGCTGCTTGT-TCACAGAGCAGTGGAC-GGGCCTGGTTTCCATCGGCCCCGA--AGG-GACCTTTTAAAG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9475474 234 - 31815103 aggattttggagctggaaggttctggttctgtg-tctccactttacagatgggaaaactgagacccctggctggttcctaacttgcccaagggtgcaggaccccacccctcaggccaggggGCT-CTTTCTGTCTTGGATCTGAAAATATCTCACTGATCCTTTCCACCCCTGATTAT-TGAGAGAGCAGTGGCCGGGGCCTGGCTTTCATCAAGCCTGACGGGG-GACCTTTTAAAG i micMur3.chr21 C 0 I 1197 s proCoq1.NW_012154285v1 6728342 232 - 9870158 aggattttggagctggaaggttctggttcagtg-tctccactttacagatgggagaactgagacccctggctggttcctaacttgcccaagggctcaGGACCCTACCCCTCAGGCC-GGGGGCT-CTTTCTGTCTTGGATCTGAAAATACCTCGCTGATTCTTTCCGGCCCTGATTAC-TCAGAGAGCAGTGGCCGGGGCCTGGCTTTCATCAACCCTGA-AGGG-AACCTTTTAAAG i proCoq1.NW_012154285v1 I 158 C 0 s otoGar3.GL873618 4313924 232 + 7922563 AAGATTTGGGAGCTGAAAGGTTTTGTTTTGGTGccccccactttacagatgggaaagctgagacccatggctggttcttaaactgcccaa-ggccTAGGACCCTACCACACAGGCC-AGGGGCT-CTTTCTGTCTTATATCTGAAAATATCTCCCTGATTCTTTCCACCTCTGATCAT-TCAGAGAGCAGTGGCTTGGACCTGGCTTTCATCAACCCTGA-AGGG-AGCCTTTTAAAG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33167644 229 - 38964690 agaattttggagcaggaagg-tctggttctgcc-tccccattttacagatgggaatattgagagccctggatggtttatagcttgcccaTAGGCTCAGGACCCTGC--ATAGAGGC--TGGGTTTTTTTCTGTCTTATATCTGAAAACATCTTACTGATTTTTTCCTTCTCTGATTAT-TCAAAGATCAGTGGCCTGGGCCTGGCCTTCGTCAACTCCAA--AGGAAACCTTTTAAAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 849805 127 - 1116856 ----------------------------------TCTCT-CTCTAGAGACGGGGAAACAGAGAACCCTGGAAAG------------CCAAGGGCCCCGGCCCCTGA--ACCTGGAC--CTGGTT-CTTCCTGT-------------------------------------CTGATTGTGTCAGAGCCCGGT-----GGGCGTGGGCTTCA--AGCCCTGT--AAA------------- i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124813998 360 + 151834684 I a score=78962.000000 s hg38.chr12_KI270834v1_alt 81292 18 + 119498 ACACTT-GACAG--CCCCGCC s panTro5.chr12 127367293 18 + 137163284 ACACTT-GACAG--CCCCGCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718324 18 + 135337776 ACACTT-GACAG--CCCCGCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231687 17 - 8369578 ACACTT-GACAG--CGCC-CC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97889943 18 + 106955855 ACACTT-GACAG--CGCCGCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004794 21 + 133663169 ACACTCGGACAGGCTGCTGCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128252895 21 + 137757926 ACACTCGGACAGGCTGCTGCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10651481 21 - 16319837 ACACTCGGACAGGCTGCTGCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12275146 21 + 20526591 ACACTCGGACAGGCTGCTGCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119246900 21 + 128539186 ACACTCGGACAGGCGGCTGCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 589004 21 + 6255621 ACACTCGGACAGGCTGCTGCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4624365 21 - 8658521 ACACTTGGACAGGCTGCTGct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114824665 18 + 124281992 ACCCTT-GACTG--CGCCTCT i calJac3.chr9 C 0 I 1 s saiBol1.JH378194 469168 18 - 9212255 ACCCTT-GTCCG--CGCCTCC i saiBol1.JH378194 C 0 I 1 s cebCap1.NW_016107484v1 2888146 18 + 4466143 ACCCTT-GACTG--CGCCTCT i cebCap1.NW_016107484v1 C 0 I 1 s aotNan1.NW_018491581v1 1590718 16 + 5364348 ACCCTT-GACT----GCCCTC i aotNan1.NW_018491581v1 C 0 I 1 s proCoq1.NW_012154285v1 6728574 18 - 9870158 CCAGCT-GACAG--CCTCGCC i proCoq1.NW_012154285v1 C 0 I 66 s otoGar3.GL873618 4314156 18 + 7922563 ACAGCT-GACGG--CACCAcc i otoGar3.GL873618 C 0 I 1 s canFam3.chr26 33167873 16 - 38964690 ACAGTT-GA--G--TGTTGCC i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 849932 18 - 1116856 ACACTT-GACTG--CGTTTCC i dasNov3.JH568189 C 0 I 1 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I a score=820537.000000 s hg38.chr12_KI270834v1_alt 81310 72 + 119498 GCTTTCCTAAGCA----------GCCAACACCAGCGTGATCGAGCCTTTTCCCGGGGACTCAGGGC-C-TTTCTTT--CATCACTG s panTro5.chr12 127367311 72 + 137163284 GCTTTCCTAAGCA----------GCCAACACCAGCATAATTGAGCCTTTCCCCGGTGACTCAGGGC-C-TTTCTTT--CATCACTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718342 72 + 135337776 GCTTTCCTAAGCA----------GCCAACACCAGCGTAATTGAGCCTTTCCCCGGTGACTCAGGGC-C-TTTCTTT--CATCACTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231704 72 - 8369578 GCTTTCCTAAGCA----------GCCAACACCAGCGTAACTGAGCCTTTCCCCGGTGACTCAGGGC-C-TTTCTTT--CATCACTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97889961 73 + 106955855 ACTTTTCTAAGCA----------GCCAACACCAGCGTAATTGAGCCTTTCCCCGGTGACTCAGGGCGG-TTTCTTT--CATCACTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004815 73 + 133663169 ACTTTCCTAAGCA----------GCCGACACCAGCATAATCGAGCCTTTCCCTGGTGACTCAGGGC-CATTTCCTT--CATCACTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128252916 73 + 137757926 ACTTTCCTAAGCA----------GCCGACACCAGCATAATCGAGCCTTTCCCTGGTGACTCAGGGC-CATTTCCTT--CATCACTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10651502 73 - 16319837 ACTTTCCTAAGCA----------GCCGACACCAGCATAATCGAGCCTTTCCCTGGTGACTCAGGGC-CATTTCCTT--CATCACTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12275167 73 + 20526591 ACTTTCCTAAGCA----------GCCGATACCAGCATAATCGAGCCTTTCCCTGGTGACTCAGGGC-CATTTCCTT--CATCACTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119246921 73 + 128539186 ACTTTCCTAAGCA----------GCCGACACCAGTATAATTGAACCCTTCCCTGGTGACTCAGGGC-CATTTCCTT--CATCACTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 589025 73 + 6255621 ACTTTCCTAAGCA----------GCCGACACCAGCATAATCGAGCCTTTCCCTGGTGACTCAGGGC-CATTTCCTT--CATCACTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4624386 73 - 8658521 gctttcctaagta----------gccaacaccagcataactgagcctttccctggtgactcagggc-catttcttt--catcactg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114824684 73 + 124281992 gctttcttaagca----------gcggacaccagcataattgagcctttcctggatgactccgggc-catTTCTTT--CATCACTG i calJac3.chr9 I 1 C 0 s saiBol1.JH378194 469187 72 - 9212255 GCTTTCCTAAGCA----------GCCGACACCAGCATAATTGAGCCTTTCCCGGGTGACT-CGGGC-CATTTCTTT--CATCACTG i saiBol1.JH378194 I 1 C 0 s cebCap1.NW_016107484v1 2888165 72 + 4466143 GCTTTCCTAAGCA----------GCCGACACCAGCATAATTGAGCCTTTCCCGGGTGACT-CGGGC-CATTTCTTT--CATCACTG i cebCap1.NW_016107484v1 I 1 C 0 s aotNan1.NW_018491581v1 1590735 73 + 5364348 GCTTTCCTAAGCA----------GCCGACACCAGCATAATTGAGCCTTTCCCGGGTGACTCGGGGC-CATTTCTTT--CATCGCTG i aotNan1.NW_018491581v1 I 1 C 0 s otoGar3.GL873618 4314175 66 + 7922563 gctttcgtaa-----------------atgctggcgtaattgaacctttccctggtgactcagggc-cattacttt--aattatct i otoGar3.GL873618 I 1 C 0 s canFam3.chr26 33167890 73 - 38964690 GCTTTTGTAGGCG----------CCTAATGCCAGTataattgaacctctccctggtgactcaggac-cattacttt--aatcattg i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 849951 81 - 1116856 GCTTTCTTCCGCAGAGAGCGCTGGCCGGCGCGCTCGCGCTCGAGCCTTT-CCTGGTGACTCAGAGC-CGTTGCTTTAACGTCA--- i dasNov3.JH568189 I 1 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728592 66 - 9870158 I a score=723218.000000 s hg38.chr12_KI270834v1_alt 81382 53 + 119498 GGCTTTGTGCTGAAGT-GTGGGCGCCCTCCCTCCTGGCTGTTGCCCTGGCTTGT s panTro5.chr12 127367383 53 + 137163284 GGCTTTGTGCTGAAGT-GTGGGCGCCCTCCCTCCTGGCTGTTGCCCTGGCTTGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718414 53 + 135337776 GGCTTTGTGCTGAAGT-GTGGGCGCCCTCCCTCCTGGCTGTTGCCCTGGCTTGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231776 53 - 8369578 GGCTTTGTGCTGAAGT-GTGGGCACCCTCCCTCCTGGCTGTTGCCCTGGCTTGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890034 53 + 106955855 GGCTTTGTGCTGAAGT-GTGGGCGCCCTCCCTCCTGGCTGTTGCCCTGGCTTGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004888 53 + 133663169 GGCTTTGTGCTGAAGT-GTGGGCGCCCTCCCTCCCGGCCGTTGCCCTGGCTTGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128252989 53 + 137757926 GGCTTTGTGCTGAAGT-GTGGGCGCCCTCCCTCCCGGCCGTTGCCCTGGCTTGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10651575 53 - 16319837 GGCTTTGTGCTGAAGT-GTGGGCGCCCTCCCTCCCGGCCGTTGCCCTGGCTTGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12275240 53 + 20526591 GGCTTTGTGCTGAAGT-GTGGGCGCCCTCCCTCCCGGCCATTGCCCTGGCTTGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119246994 53 + 128539186 GGCTTTGTGCTGAAGT-GTGGGCACCCTCCCTCCCAGCCGTTGCCCTGGCTTGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 589098 53 + 6255621 GGCTTTGTGCTGAAGT-GTGGGCGCCCTCCCTCCCGGCCGTTGCCCTGGCTTGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4624459 53 - 8658521 ggctttgtactgAAGT-GTGGGCTCCCTCCCTCCTGGCTGTTGCCCTGGCTTGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114824757 41 + 124281992 GGCTTTGTGCTGAAGT-CTGGGCGCCCTCCCT------------CCTGGCTTGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 469259 52 - 9212255 GGCTTTGTGCTGAAGT-CTGGGCGCCCTCCCTCCTGG-CGTTGCCCTGGCTTGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2888237 52 + 4466143 GGCTTTGTGCTGCAGT-CTGGGCGCCCTCCCTCCTGG-TGTTGCCCTGGCTTGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1590808 53 + 5364348 GGCTTTGTGCTGAAGT-CTGGGCGCCCTCCCTCCTGGCCGTTGCCCTGGCTTGT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6728658 53 - 9870158 ggctttgtgctgAAGT-CCGGGTGTCCTCCCTCCTGGCCACTGCCCTGGCTTGT i proCoq1.NW_012154285v1 I 66 C 0 s otoGar3.GL873618 4314241 53 + 7922563 ggctttgtgctgAAGT-CTGGGTGTCCTCTGTCCTGGCTGCTGCCCTGGCTTGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33167963 32 - 38964690 gtctttgtgctgGAGT----------------------CATTGCCTCTGCTTGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 850032 54 - 1116856 GGATTTGACCTCGAGTTGAGGATGCCCTTTCTCTTGGCTGCTGCCCTGGCTTGT i dasNov3.JH568189 C 0 M 163 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I a score=31842.000000 s hg38.chr12_KI270834v1_alt 81435 2 + 119498 CC s panTro5.chr12 127367436 2 + 137163284 CC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718467 2 + 135337776 CC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231829 2 - 8369578 CC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890087 2 + 106955855 CC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004941 2 + 133663169 CC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128253042 2 + 137757926 CC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10651628 2 - 16319837 CC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12275293 2 + 20526591 CC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119247047 2 + 128539186 CC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 589151 2 + 6255621 CC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4624512 2 - 8658521 CT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114824798 2 + 124281992 CC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 469311 2 - 9212255 CC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2888289 2 + 4466143 CC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1590861 2 + 5364348 CC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6728711 2 - 9870158 CC i proCoq1.NW_012154285v1 C 0 I 543 s otoGar3.GL873618 4314294 2 + 7922563 CC i otoGar3.GL873618 C 0 I 2 s canFam3.chr26 33167995 2 - 38964690 CC i canFam3.chr26 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e dasNov3.JH568189 850086 163 - 1116856 M a score=1299407.000000 s hg38.chr12_KI270834v1_alt 81437 119 + 119498 GTACACTATGGGG--CCTTCTCTCCTCTGCTGTCTGTGTGGGAGTGTGTGAGGGTTCCGGGGTCAGGAGGGGTGGGGGATTTGCTCACTGCAGAAAGCCTCCA-------GGTTGCT----GT-CTGCTCAGG s panTro5.chr12 127367438 126 + 137163284 GTACACTATGGGG--CCTTCTCTCCTCTGCTGTCTGTGTGGGAGTGTGTGAGGGTTCCGGGGTCAGGAGGGGTGGGGGATTTGCTCACTGCAGAAAGCCTCCAGGTTGCTGGTTGCT----GT-CTGCTCAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718469 126 + 135337776 GTACACTATGGGG--CCTTCTCTCCTCTGCTGTCTGTGTGGGAGTGTGTGAGGGTTCCGGGGTCAGGAGGGGTGGGGGATTTGCTCACTGCAGAAAGCCTCCAGGTTGCTGGTTGCT----GT-CTGCTCAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231831 119 - 8369578 GTACACTATGGGG--CCTTCTCTCCTCTGCTGTCTGTGTGGGAGTGTGTGAGGGTTCCGGGGTCAGGAGGGGTAGGGGATTTGCTCACTGCAGAAAGCCTCCA-------GGTTGCT----GT-CTGCTCAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890089 119 + 106955855 GTACACTATGGGG--CCCTCTCTCCTCTGCTGTCTGTGTGGGAGTGTGTGAGGGTTCTGGGGTCAGGAGGGGTGGAGGATTTGGTCACTGCAGAAAGCCTCCA-------GGTTGCT----GT-CTGCTCAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124004943 119 + 133663169 GTACACTATGGGG--CCCTCTCTCCTCTGCTGCCTGCGTGGGAGTGTGTGAGCGTGCTGGGGTCAGGAGGGGTGGGGGATTTGCTCATTGCAGAAAGCCTCCA-------GGTTGCT----GT-CTTCTCAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128253044 119 + 137757926 GTACACTATGGGG--CCCTCTCTCCTCTGCTGCCTGCGTGGGAGTGTGTGAGCGTGCTGGGGTCAGGAGGGGTGGGGGATTTGCTCATTGCAGAAAGCCTCCA-------GGTTGCT----GT-CTTCTCAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10651630 119 - 16319837 GTACACTATGGGG--CCCTCTCTCCTCTGCTGCCTGTGTGGGAGTGTGTGAGCGTGCTGGGGTCAGGAGGGGTGGGGGATTTGCTCATTGCAGAAAGCCTCCA-------GGTTGCT----GT-CTTCTCAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12275295 119 + 20526591 GTACACTATGGGG--CCCTCTCTCCTCTGCTGCCTGCGTGGGAGTGTGTGAGCGTGCCGGGGTCAGGAGGGGTGGGGGATTTGCTCATTGCAGAAAGCCTCCA-------GGTTGCT----GT-CTGCTCAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119247049 119 + 128539186 GTAGGCTATGGGG--CCCTCTCTCCTCTGCTGCCTGCGTGGGAGTGTGTGAGGGTGCCGGGGTCAGGAGGGCTGGGGGATTTGCTCATTGCAGAAAGCCTCCA-------GGTTGCT----GT-CTGCTCAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 589153 119 + 6255621 GTACACTATGGGG--CCGTCTCTCCTCTGCTGCCTGCGTGGGAGCGTGTGAGCGTGCCGGGGTCAGGAGGGGTGGGGGATTTGCTCATTGCAGAAAGCCTCCA-------GGTTGCT----GT-CTGCTCAGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4624514 121 - 8658521 GTACACTATGGGG--CCCTCTCTCCTCTGCTGCCTGCGTGGGAGTGTGTGAGGGTGCCGGGGTCAGGAGGGGTGGGGGATTTGCTCATTGCAGAAAGCCTCCA-------GCTTGCT--CAGT-CTGCTCAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114824800 121 + 124281992 GTACACTGTGGGG--CCCTCTCTCCTCTGCTGTGTTCGTGGGAGTGGGTGAG-GTTCCCGGGTCAGGAGGGGT-GGGGATTTGCTCACTGCAAAAAGCCTCCA-------GGCTGCTTTCAGT-CTGCTCAGG i calJac3.chr9 C 0 I 893 s saiBol1.JH378194 469313 122 - 9212255 GTACACTGTGGGG--CCCTCTCTCCTCTGCTCTCTGCGTGGGGGTGGGTGAG-GTTCCCAGGTCAGGAGGGGTGGGGGATTTGCTCACTGCAGAAAGCCTCCA-------GGCTGCTTTCAGT-CTGCTCAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2888291 122 + 4466143 GTACACTGTGGGG--CCCTCTCTCCTCTGCTGTCTGCGTGGGAGTGGGTGAG-GTTCCCGGGTCAGGAGGGGTGGGAGATTTGCTCACTGCAGAAAGCCTCCA-------GGCTGCTTTCAGT-CTGCTCAGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1590863 122 + 5364348 GTACACTGTGGGG--CCCTCTCTCCTCTGCTGTCTGCGTGGGAGTGGGTGAG-GTTCCGGGGTCAGGAGGGGTGGGGGATTTGCTCACTGCAGAAAGCCTCCA-------GGCTGCTTTCAGT-CTGCTCAGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4314298 114 + 7922563 CTGCTGTGTGGTT--CCCTCTCTCCTCTCCTGTCT--GTGAGGGTGTAGAGGGGATCCAGGGCTAGAGGGGTTGGGGG---TGCCTACTGCAGAAAGTCTTCA-------GACTGCT----AT-CTGCTCAGG i otoGar3.GL873618 I 2 C 0 s canFam3.chr26 33167997 122 - 38964690 TTACACCGTGTGGCTCCTTCTCTCCTCTCTTGTCTGCAGGCAAGTGGGTGGGGGTCTTGGGGCCTGGGATAGGGGGGCACTTGCCCAGTATAGACAGTCTCCA-------TATTGCT----GTGCTGGCTGGG i canFam3.chr26 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728713 543 - 9870158 I e dasNov3.JH568189 850086 163 - 1116856 M a score=78544.000000 s hg38.chr12_KI270834v1_alt 81556 7 + 119498 CTGTCTC s panTro5.chr12 127367564 7 + 137163284 CTGTCTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718595 7 + 135337776 CTGTCTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231950 7 - 8369578 CTGTCTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890208 7 + 106955855 CTGTCTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124005062 7 + 133663169 CTGTCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128253163 7 + 137757926 CTGTCTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10651749 7 - 16319837 CTGTCTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12275414 7 + 20526591 CTGTCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119247168 7 + 128539186 ctgtctc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 589272 7 + 6255621 CTGTCTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4624635 7 - 8658521 ctgtctc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114825814 7 + 124281992 ctgtctt i calJac3.chr9 I 893 C 0 s saiBol1.JH378194 469435 7 - 9212255 ctgtctc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2888413 7 + 4466143 CTGTCTC i cebCap1.NW_016107484v1 C 0 I 1027 s aotNan1.NW_018491581v1 1590985 7 + 5364348 ctgtctc i aotNan1.NW_018491581v1 C 0 I 8 s otoGar3.GL873618 4314412 7 + 7922563 CAGTCTC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33168119 7 - 38964690 TTGTTCC i canFam3.chr26 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728713 543 - 9870158 I e dasNov3.JH568189 850086 163 - 1116856 M a score=75586.000000 s hg38.chr12_KI270834v1_alt 81563 6 + 119498 CTCCCT s panTro5.chr12 127367571 6 + 137163284 CTCCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718602 6 + 135337776 CTCCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231957 6 - 8369578 CTCCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890215 6 + 106955855 CTCCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124005069 6 + 133663169 ctccct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128253170 6 + 137757926 ctccct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10651756 6 - 16319837 CTCCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12275421 6 + 20526591 ctccct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119247175 6 + 128539186 ctccct i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 589279 6 + 6255621 ctccct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4624642 6 - 8658521 ctccct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114825821 6 + 124281992 ctccct i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 469442 6 - 9212255 ctccct i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2889447 6 + 4466143 ctccct i cebCap1.NW_016107484v1 I 1027 C 0 s aotNan1.NW_018491581v1 1591000 6 + 5364348 ctctct i aotNan1.NW_018491581v1 I 8 C 0 s otoGar3.GL873618 4314419 6 + 7922563 ctcact i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33168126 6 - 38964690 CACTCT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728713 543 - 9870158 I e dasNov3.JH568189 850086 163 - 1116856 M a score=51376.000000 s hg38.chr12_KI270834v1_alt 81569 5 + 119498 GTCTC s panTro5.chr12 127367577 5 + 137163284 GTCTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718608 5 + 135337776 GTCTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231963 5 - 8369578 GTCTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890221 5 + 106955855 GTCTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124005075 5 + 133663169 gtctc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128253176 5 + 137757926 gtctc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10651762 5 - 16319837 GTCTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12275427 5 + 20526591 gtctc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119247181 5 + 128539186 gtctc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 589285 5 + 6255621 gtctc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4624648 5 - 8658521 gtctc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114825827 5 + 124281992 gtctc i calJac3.chr9 C 0 I 2 s saiBol1.JH378194 469448 4 - 9212255 gtct- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2889453 5 + 4466143 gtctc i cebCap1.NW_016107484v1 C 0 I 1 s aotNan1.NW_018491581v1 1591006 5 + 5364348 gtctc i aotNan1.NW_018491581v1 C 0 I 3 s otoGar3.GL873618 4314425 5 + 7922563 ctttc i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728713 543 - 9870158 I e dasNov3.JH568189 850086 163 - 1116856 M e canFam3.chr26 33168132 0 - 38964690 C a score=236932.000000 s hg38.chr12_KI270834v1_alt 81574 96 + 119498 TCTGTCTCC-TCCCTGT-----------------------------------CTCCCTGTCTCCTCCCTGT---CTCT-----------CTGTCTC--------CTCCCTGTCTC-----------TCTGTCTC-CTCCCTGTCTCCCTGTCTC-CTCCCTGTCTC--------T s panTro5.chr12 127367582 88 + 137163284 TCTGTCTCC-TCCCTAT-----------------------------------CTCCCTGTCTCCTCCCTGT---CTCT-----------CTGTCCC--------CTCC-------------------CTGTCTC-CTCCCTGTCTTCCTGTCTC-CTCCCTGTCTC--------T i panTro5.chr12 C 0 T 68 s panPan2.chr12 125718613 107 + 135337776 TCTGTCTCC-TCCCTAT-----------------------------------CTCCCTGTCTCCTCCCTGT---CTCT-----------CTGTCCC--------CTCCCTGTCTCCTCCCTGTCTTCCTGTCTC-CTCTCTGTCTCTCTGTCTC-CTCCCTGTCTC--------T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8231968 107 - 8369578 TCTGTCTCC-TCCCTAT-----------------------------------CTCCCTGTCTCCTCCCTGT---CTCT-----------CTGTCCC--------CTCCCTGTCTCCTCCCTGTCTTCCTGTCTC-CTCCCTGTCTCTCTGTCTC-CTCCCTGTCTC--------C i gorGor5.CYUI01015152v1 C 0 I 11 s nomLeu3.chr10 97890226 96 + 106955855 CCTGTCTCC-TCCCTGT-----------------------------------CTCTCTGTCTCCTCCCTGT---CTCT-----------CTGTCTC--------CTCCCTGTCTC-----------TCTGTCTC-CTCCCTGTCTCTCTGTCTC-CTCCCTATCTC--------c i nomLeu3.chr10 C 0 I 11 s macNem1.NW_012010578v1 10651767 92 - 16319837 ------------CCTGT-----------------------------------CTCCCTGTCTCCTCCCTGT---CTCT-----------CTGTCTCCTCTCTGTCTCCCTGTCTC-----------CCTGTCTC-CTCCCTGTCTCTCTGTCTC-CTCCCTGTCTC--------- i macNem1.NW_012010578v1 C 0 I 5 s cerAty1.NW_012001186v1 12275432 73 + 20526591 ------------cctgt-----------------------------------ctccctgtctcc-------------------------ctgtctc--------ctccctgtctc-----------cctgtctc-ctccctgtctctctgtctc-ctccctgtctc--------- i cerAty1.NW_012001186v1 C 0 I 5 s chlSab2.chr11 119247186 130 + 128539186 ------------cctgtctctctctgtctcctccctgtctcctccctgtctcctccctgtctcctccctgtctcctcc-----------ctgtctc--------ctccctgtctc-----------cctgtctc-ctccctgtctccctgtctc-ctccctgtctcctccctgt- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 589290 54 + 6255621 ------------cctgt---------------------------------------------------------ctcc-----------ctgtctc--------ctccctgtctc-----------cctgtctc-ctccctgtctccctgtctc--------------------- i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114825834 105 + 124281992 cctgtctctctccctgt-------------------------------------ctctgtctcctccctgt---ctctctgtctcttccctgtctc-------tctccctgtctc-----------tctgtctc-ctccctgtc--tctgtctc-ctccctctctc--------c i calJac3.chr9 I 2 C 0 s saiBol1.JH378194 469452 81 - 9212255 -ctgtctct-------t-------------------------------------ccctgtcctctccctgt---ct-------------ctgtctc-------tctccctgtctg-----------tctct----ctccctgtc--tctgtctc-ctccctgtctc--------t i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2889459 93 + 4466143 -ctgtctctctccctgt-------------------------------------ctctgtctcctccctgt---ct-------------ctgtctc-------tctccctgtctc-----------tctgtctctctccctgtc--tctgtttctctccctgtctc--------t i cebCap1.NW_016107484v1 I 1 C 0 s aotNan1.NW_018491581v1 1591014 87 + 5364348 cctgtctctctccctgt-------------------------------------ctctgtctcctccctgt---ct-------------ctgtctc--------ctccctgtc-------------tctgtctc-ctccctg----tctgtctc-ctccctatctc--------t i aotNan1.NW_018491581v1 I 3 C 0 s otoGar3.GL873618 4314430 11 + 7922563 --------------------------------------------------------------------------------------------------------------------------------tctctt-cttct----------------------------------- i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728713 543 - 9870158 I e dasNov3.JH568189 850086 163 - 1116856 M e canFam3.chr26 33168132 0 - 38964690 C e colAng1.NW_012116043v1 4624653 0 - 8658521 C e macFas5.chr11 128253181 0 + 137757926 C e rheMac8.chr11 124005080 0 + 133663169 C a score=6876.000000 s hg38.chr12_KI270834v1_alt 81670 2 + 119498 CT s panTro5.chr12 127367602 2 + 137163284 CT i panTro5.chr12 T 68 C 0 s panPan2.chr12 125718720 2 + 135337776 CT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8232086 2 - 8369578 CT i gorGor5.CYUI01015152v1 I 11 C 0 s nomLeu3.chr10 97890333 2 + 106955855 ct i nomLeu3.chr10 I 11 C 0 s chlSab2.chr11 119247316 2 + 128539186 ct i chlSab2.chr11 C 0 C 0 s calJac3.chr9 114825939 2 + 124281992 ct i calJac3.chr9 C 0 I 6 s saiBol1.JH378194 469533 2 - 9212255 CT i saiBol1.JH378194 C 0 M 1039 s otoGar3.GL873618 4314441 2 + 7922563 ct i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728713 543 - 9870158 I e dasNov3.JH568189 850086 163 - 1116856 M e canFam3.chr26 33168132 0 - 38964690 C e aotNan1.NW_018491581v1 1591101 0 + 5364348 C e cebCap1.NW_016107484v1 2889552 0 + 4466143 C e colAng1.NW_012116043v1 4624653 0 - 8658521 C e manLeu1.NW_012103587v1 589344 0 + 6255621 C e cerAty1.NW_012001186v1 12275505 5 + 20526591 I e macNem1.NW_012010578v1 10651859 5 - 16319837 I e macFas5.chr11 128253181 0 + 137757926 C e rheMac8.chr11 124005080 0 + 133663169 C a score=23796.000000 s hg38.chr12_KI270834v1_alt 81672 8 + 119498 GTCTCC--------TC s panTro5.chr12 127367604 8 + 137163284 GTCTCC--------TC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718722 8 + 135337776 GTCTCC--------TC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8232088 8 - 8369578 GTCTCC--------TC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890335 16 + 106955855 gtctcctccctatatc i nomLeu3.chr10 C 0 C 0 s chlSab2.chr11 119247318 8 + 128539186 gtgtcc--------tc i chlSab2.chr11 C 0 C 0 s calJac3.chr9 114825947 8 + 124281992 gtctcc--------tc i calJac3.chr9 I 6 C 0 s cebCap1.NW_016107484v1 2889552 8 + 4466143 gtctcc--------tc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1591101 8 + 5364348 gtctcc--------tc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4314443 8 + 7922563 ctcttc--------tc i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728713 543 - 9870158 I e dasNov3.JH568189 850086 163 - 1116856 M e canFam3.chr26 33168132 0 - 38964690 C e saiBol1.JH378194 469535 1039 - 9212255 M e colAng1.NW_012116043v1 4624653 0 - 8658521 C e manLeu1.NW_012103587v1 589344 0 + 6255621 C e cerAty1.NW_012001186v1 12275505 5 + 20526591 I e macNem1.NW_012010578v1 10651859 5 - 16319837 I e macFas5.chr11 128253181 0 + 137757926 C e rheMac8.chr11 124005080 0 + 133663169 C a score=34572.000000 s hg38.chr12_KI270834v1_alt 81680 11 + 119498 CCTGTCTCTCT s panTro5.chr12 127367612 11 + 137163284 CCTGTCTCTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718730 11 + 135337776 CCCGTCTCCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8232096 11 - 8369578 CCTGTCTCTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890351 11 + 106955855 cctgtctctct i nomLeu3.chr10 C 0 C 0 s chlSab2.chr11 119247326 11 + 128539186 cctgtctccct i chlSab2.chr11 C 0 C 0 s calJac3.chr9 114825955 11 + 124281992 cctgtctctct i calJac3.chr9 C 0 I 10 s cebCap1.NW_016107484v1 2889560 11 + 4466143 cctgtctctct i cebCap1.NW_016107484v1 C 0 I 16 s aotNan1.NW_018491581v1 1591109 11 + 5364348 cctgtctctct i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4314451 3 + 7922563 cct-------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33168132 10 - 38964690 -CTTGTTCTCT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728713 543 - 9870158 I e dasNov3.JH568189 850086 163 - 1116856 M e saiBol1.JH378194 469535 1039 - 9212255 M e colAng1.NW_012116043v1 4624653 0 - 8658521 C e manLeu1.NW_012103587v1 589344 0 + 6255621 C e cerAty1.NW_012001186v1 12275505 5 + 20526591 I e macNem1.NW_012010578v1 10651859 5 - 16319837 I e macFas5.chr11 128253181 0 + 137757926 C e rheMac8.chr11 124005080 0 + 133663169 C a score=26810.000000 s hg38.chr12_KI270834v1_alt 81691 16 + 119498 GTCCC--------CTCCCTGTCTC s panTro5.chr12 127367623 16 + 137163284 GTCCC--------CTCCCTGTCTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718741 24 + 135337776 GTCTCCTCCCTGTCTCCCTGTCTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8232107 24 - 8369578 GTCTCCTTCCTATCTCCCTGTCTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890362 24 + 106955855 gtctcctccctgtctccctgtctc i nomLeu3.chr10 C 0 C 0 s chlSab2.chr11 119247337 16 + 128539186 gtctc--------ctccctgtctc i chlSab2.chr11 C 0 C 0 s calJac3.chr9 114825976 16 + 124281992 gtctc--------ctccctgtctc i calJac3.chr9 I 10 I 1 s aotNan1.NW_018491581v1 1591120 15 + 5364348 -ccct--------gtctctgtctc i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33168142 13 - 38964690 CTCCC--------CCTCCTGC--- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728713 543 - 9870158 I e dasNov3.JH568189 850086 163 - 1116856 M e otoGar3.GL873618 4314454 0 + 7922563 C e cebCap1.NW_016107484v1 2889571 16 + 4466143 I e saiBol1.JH378194 469535 1039 - 9212255 M e colAng1.NW_012116043v1 4624653 0 - 8658521 C e manLeu1.NW_012103587v1 589344 0 + 6255621 C e cerAty1.NW_012001186v1 12275505 5 + 20526591 I e macNem1.NW_012010578v1 10651859 5 - 16319837 I e macFas5.chr11 128253181 0 + 137757926 C e rheMac8.chr11 124005080 0 + 133663169 C a score=12540.000000 s hg38.chr12_KI270834v1_alt 81707 11 + 119498 CTCCCTG--TCTT s panTro5.chr12 127367639 11 + 137163284 CTCCCTG--TCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718765 11 + 135337776 CTTCCTA--TCTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8232131 11 - 8369578 CTCCCTG--TCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890386 11 + 106955855 ctccctg--tctc i nomLeu3.chr10 C 0 C 0 s calJac3.chr9 114825993 11 + 124281992 ctccctgcctc-- i calJac3.chr9 I 1 C 0 s cebCap1.NW_016107484v1 2889587 9 + 4466143 ctccctg--tc-- i cebCap1.NW_016107484v1 I 16 C 0 s aotNan1.NW_018491581v1 1591135 9 + 5364348 ctccctt--tc-- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4314454 7 + 7922563 ----ttg--tctt i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728713 543 - 9870158 I e dasNov3.JH568189 850086 163 - 1116856 M e canFam3.chr26 33168155 0 - 38964690 C e saiBol1.JH378194 469535 1039 - 9212255 M e colAng1.NW_012116043v1 4624653 0 - 8658521 C e manLeu1.NW_012103587v1 589344 0 + 6255621 C e chlSab2.chr11 119247353 0 + 128539186 C e cerAty1.NW_012001186v1 12275505 5 + 20526591 I e macNem1.NW_012010578v1 10651859 5 - 16319837 I e macFas5.chr11 128253181 0 + 137757926 C e rheMac8.chr11 124005080 0 + 133663169 C a score=3030.000000 s hg38.chr12_KI270834v1_alt 81718 1 + 119498 C s panTro5.chr12 127367650 1 + 137163284 C i panTro5.chr12 C 0 I 19 s panPan2.chr12 125718776 1 + 135337776 C i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8232142 1 - 8369578 C i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890397 1 + 106955855 c i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124005080 1 + 133663169 c i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128253181 1 + 137757926 c i macFas5.chr11 C 0 C 0 s chlSab2.chr11 119247353 1 + 128539186 c i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4624653 1 - 8658521 c i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114826004 1 + 124281992 t i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2889596 1 + 4466143 t i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1591144 1 + 5364348 t i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4314461 1 + 7922563 t i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728713 543 - 9870158 I e dasNov3.JH568189 850086 163 - 1116856 M e canFam3.chr26 33168155 0 - 38964690 C e saiBol1.JH378194 469535 1039 - 9212255 M e manLeu1.NW_012103587v1 589344 0 + 6255621 C e cerAty1.NW_012001186v1 12275505 5 + 20526591 I e macNem1.NW_012010578v1 10651859 5 - 16319837 I a score=90973.000000 s hg38.chr12_KI270834v1_alt 81719 16 + 119498 CTGTCTCCTCCCTGTC s panTro5.chr12 127367670 16 + 137163284 CTGTCTCCTCCCTGTC i panTro5.chr12 I 19 C 0 s panPan2.chr12 125718777 16 + 135337776 CTGTCTCCTCCCTGTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8232143 16 - 8369578 CTGTCTCCTCCCTGTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890398 16 + 106955855 ctgtctcctccctgtc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124005081 13 + 133663169 ctgt---ctccctgtc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128253182 13 + 137757926 ctgt---ctccctgtc i macFas5.chr11 C 0 C 0 s chlSab2.chr11 119247354 16 + 128539186 ctgtctcctccctgtc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 589344 9 + 6255621 -------ctccctgtc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4624654 16 - 8658521 ctgtctcccccctgtc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114826005 16 + 124281992 ctgtctcctccctgtc i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2889597 16 + 4466143 ctgcctcctccctgtc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1591145 14 + 5364348 ctgtctcctccctg-- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4314462 14 + 7922563 ctgcctctgccttg-- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33168155 13 - 38964690 ---TCGCCTCCTGGTC i canFam3.chr26 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728713 543 - 9870158 I e dasNov3.JH568189 850086 163 - 1116856 M e saiBol1.JH378194 469535 1039 - 9212255 M e cerAty1.NW_012001186v1 12275505 5 + 20526591 I e macNem1.NW_012010578v1 10651859 5 - 16319837 I a score=117275.000000 s hg38.chr12_KI270834v1_alt 81735 20 + 119498 TCTCTGTCTC--------------CTCCCTGT---CT s panTro5.chr12 127367686 20 + 137163284 TCTCTGTCTC--------------CTCCCTGT---CT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718793 20 + 135337776 TCTCTGTCTC--------------CTCCCTGT---CT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8232159 20 - 8369578 TCTCTGTCTC--------------CTCCCTGT---CT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890414 20 + 106955855 tctctgtctc--------------cTCCCTGT---CT i nomLeu3.chr10 C 0 I 21 s rheMac8.chr11 124005094 20 + 133663169 tccctgtctc--------------cTCCCTGT---CT i rheMac8.chr11 C 0 I 6 s macFas5.chr11 128253195 20 + 137757926 tccctgtctc--------------cTCCCTGT---CT i macFas5.chr11 C 0 I 6 s chlSab2.chr11 119247370 20 + 128539186 tccctgtctc--------------ctccctgt---ct i chlSab2.chr11 C 0 I 6 s manLeu1.NW_012103587v1 589353 20 + 6255621 tctctgtctc--------------cTCCCTGT---CT i manLeu1.NW_012103587v1 C 0 I 6 s colAng1.NW_012116043v1 4624670 20 - 8658521 tccctgtctc--------------ctccctgt---ct i colAng1.NW_012116043v1 C 0 I 6 s calJac3.chr9 114826021 35 + 124281992 --tctgtctcctccctctctccctgcctctgtctcct i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 470575 20 - 9212255 tctctgtctc--------------gtctctgt---ct i saiBol1.JH378194 M 1039 C 0 s cebCap1.NW_016107484v1 2889613 16 + 4466143 --tctgtctc--------------ctcccggt----- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1591159 20 + 5364348 tctctgtctc--------------ctccctgt---ct i aotNan1.NW_018491581v1 C 0 I 500 s otoGar3.GL873618 4314476 16 + 7922563 -ctctgtctt-----------------tctgt---ct i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33168168 6 - 38964690 TCTCTG------------------------------- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728713 543 - 9870158 I e dasNov3.JH568189 850086 163 - 1116856 M e cerAty1.NW_012001186v1 12275505 5 + 20526591 I e macNem1.NW_012010578v1 10651859 5 - 16319837 I a score=507144.000000 s hg38.chr12_KI270834v1_alt 81755 50 + 119498 CCCTGTCTCTGTTCTTGTGCATGTGTCTCCC-CCTCTGTCCCTCCATCCCC s panTro5.chr12 127367706 50 + 137163284 CCCTGTCTCTGTTCTTGTGCATGTGTCTCCC-CCTCTGTCCCTCCATCCCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718813 50 + 135337776 CCCTGTCTCTGTTCTTGTGCATGTGTCTCCC-CCTCTGTCCCTCCATCCCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8232179 50 - 8369578 CCCTGTCTCTGTTCTTGTGCATGTGTCTCCC-GCTCTGTCCCTCCATCCCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890455 50 + 106955855 CTCTGTCTCTGTCCTTGTGCATGTGTCTCCC-CCTCTGTCCCTCCATCCCC i nomLeu3.chr10 I 21 C 0 s rheMac8.chr11 124005120 50 + 133663169 CTCTGTCTCTATCCTTGTGCATGTGTCTCCC-TCTCTGTCCCTCCATTCCC i rheMac8.chr11 I 6 C 0 s macFas5.chr11 128253221 50 + 137757926 CTCTGTCTCTATCCTTGTGCATGTGTCTCCC-TCTCTGTCCCTCCATTCCC i macFas5.chr11 I 6 C 0 s macNem1.NW_012010578v1 10651864 50 - 16319837 CTCTGTCTCTAACCTTGTGCATGTGTCTCCC-TCTCTGTCCCTCCATTCCC i macNem1.NW_012010578v1 I 5 C 0 s cerAty1.NW_012001186v1 12275510 50 + 20526591 CTCTGTCTCTATCCTTGTGCATGTGTCTCCC-TCTCTGTCCCTCCATTCCC i cerAty1.NW_012001186v1 I 5 C 0 s chlSab2.chr11 119247396 48 + 128539186 CTCTGTCTCTATCCTTGTGCATGTGTCTCCC-TCTC--TCCCTCCATCCCC i chlSab2.chr11 I 6 C 0 s manLeu1.NW_012103587v1 589379 50 + 6255621 CTCTGTCTCTATCCTTGTGCATGTGTCTCCC-TCTCTGTCCCTCCATTCCC i manLeu1.NW_012103587v1 I 6 C 0 s colAng1.NW_012116043v1 4624696 50 - 8658521 ctcTGTCTCTATCCTTGTGCATGTGTCTCCC-TCTCTGTCCCTCCATCCCC i colAng1.NW_012116043v1 I 6 C 0 s calJac3.chr9 114826056 51 + 124281992 ccctgtctctgtccttgtGCATGTGTCTCCCTTCTCTGTCCCTCCATCCCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 470595 51 - 9212255 ctctgtctctgtccttgtGCACGTGTCTCCCTTCTCTGTCCTTCCATCCCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2889629 51 + 4466143 ctctgtctctgtccttgtgcacgtgtctcccttctctgtccctccatcccc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1591679 51 + 5364348 ctctgtctttgtccttgtgcacatgtctcctttctctgtccctCCATCCCC i aotNan1.NW_018491581v1 I 500 C 0 s otoGar3.GL873618 4314492 30 + 7922563 ctctGACTGTG---------------------TCTCTGTCTTTCTATTCCC i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728713 543 - 9870158 I e dasNov3.JH568189 850086 163 - 1116856 M e canFam3.chr26 33168174 0 - 38964690 C a score=3713281.000000 s hg38.chr12_KI270834v1_alt 81805 386 + 119498 CTCTTTCTTCTCTGGCTCACCCCAGCCTCCTACCAGA--GCACA-----AATGCCTGGGCCCCTGCCTGGCC--GCCCCCACACTGCATCCATGCCCTCC-GGGACctctg---tctcctgctcttctctcctgcttttcctt-----cctctc----------ctgctttgccttgtctgtgctgttct-cttccacttc---tGTCTTTC-----CATGG---CGTGGTCTGGGAGACTCCTGTGGCTTTCACTGACCTTGCCT----------------------------------------------------------------GGCAGTGG--------GATGCCCCGGTGAG----------ATGGGTTCGGTT------------CCTTCTCT----GGCCTTTGTACCAGCGCTGCTGTTCTGTCTCCTGTTCCGTTGGCAGTTCTGGTTCTCCAGAGGAACAAGGGCAGTGGACATCTGCGT-TCTGGAGGAGCAGAGTGATGATCTAGTCTTA s panTro5.chr12 127367756 386 + 137163284 CTCTTTCTTCTCTGGCTCACCCCAGCCTCCTACCAGA--GCACA-----AATGCCTGGGCCCCTGCCTGGCC--GCCCCCACACTGCATCCATGCCCTCC-GGGACctctg---tctcctgctcttctctcctgcttttcctt-----cctctc----------ctgctttgccttgtctgtgctgttct-cttccacttc---tGTCTTTC-----CATGG---CGTGGTCTGGGAGACTCCTGTGGCTTTCACTGACCTTGCCT----------------------------------------------------------------GGCAGCGG--------GATGCCCCAGTGAG----------ATGGGTTCGGTT------------CCTTCTCC----GGCCTTTGCACCAGCGCTGCTGTTCTGTCTCCTGTTCCGTTGGCAGTTCTGGTTCTCCAGAGGACCAAGGGCAGTGGACATCTGCGT-TCTGGAGGAGCAGAGTGATGATCTAATCTTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125718863 386 + 135337776 CTCTTTCTTCTCTGGCTCACCCCAGCCTCCTACCAGA--GCACA-----AATGCCTGGGCCCCTGCCTGGCC--GCCCCCACACTGCATCCATGCCCTCC-GGGACctctg---tctcctgctcttctctcctgcttttcctt-----cctctc----------ctgctttgccttgtctgtgctgttct-cttccacttc---tGTCTTTC-----CATGG---CGTGGTCTGGGAGACTCCTGTGGCTTTCACTGACCTTGCCT----------------------------------------------------------------GGCAGCGG--------GATGCCCCAGTGAG----------ATGGGTTCGGTT------------CCTTCTCC----GGCCTTTGCACCAGCGCTGCTGTTCTGTCTCCTGTTCCGTTGGCAGTTCTGGTTCTCCAGAGGACCAAGGGCAGTGGACATCTGCGT-TCTGGAGGAGCAGAGTGATGATGTAGTCTTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8232229 386 - 8369578 CTCTTTCTTCTCTGCCTCACCCCAGCCTCCTACCAGA--GCACA-----AATGCCTGGGCCCCTGCCTGGCC--GCCCCCACACTGCATCCATGCCCTCC-GGGACCTCTG---TCTCCTGCTCTTCTCTCCTCCTTTTCCTT-----CCTCTC----------CTGCTTTGCCTTGTCTGTGCTGTTCT-CTTCCACTTC---TGTCTTTC-----CATGG---CGTGGTCTGGGAGACTCCTGTGGCTTTCACTGACCTTGCCT----------------------------------------------------------------GGCAGCGG--------GATGCCCCAGTGAG----------ATGGGTTCGGTT------------CCTTCTCC----CGCCTTTGCACCAGCGCTGCTGTTCTGTCTCCTGTTCCTTTGGCAGTTCTGGTTCTCCAGAGGACCAAGGGCAGTGGACATCTGCGT-TCTGGAGGAGCAGAGTGATGATCTAGTCTTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890505 386 + 106955855 CTCGTTCTTCTCTGGCTCACCCCAGCCTCCTACCAGA--GCACA-----AATGCCTGGGCCCCTGCCTGGCC--G-CCCCACACTGCATCCATGCCCTCC-GGGACCTCTG---TCTCCTGCTCTTCTCTCCTGCTTTTCCTT-----CCTCTC----------CTGCTTTGCCTTGTCTGCGCTGTTCTCCTTCCACTTC---TCTCTTTC-----CATGG---CGTGGTCTGGGAGACTCCTGTGGCTTTCACTGACCTTGCCT----------------------------------------------------------------GGCAGCGG--------GATGACCCAGTGAG----------GTGGGTTCGGTT------------CCTTCTCC----GGCCTTTGCACCAGCGCTGCTGTTCTGTCTCCTGTTCCGTTGGCAGTTCTGGTTCTCCAGAGGACCAAGGGCAGTGGACATCTGTGT-TCTGGAGGAGCAGAGTGATGATCTAGTCTTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124005170 383 + 133663169 CTCGTTCTTCTCTGGCTCACCCCAGCCTCCTACCAGA--GCCCA-----AATGCCTGGGCCCCTGCCTGGCC--GCCCCCATACTGCTTCCGTGTCCTCT-GGGGCCTCTG---TCTCCTGCTCTTCTCTC---CTTTTCCTT-----CCTTTC----------CTGCTTTGCCTTCTCTGTGCTATTCTCCTTCCACTTC---TGTCTTTC-----CATAG---CGTTGTCTGGGAGACTTCTGTGGCTTTCATTGAGCTTGCCT----------------------------------------------------------------GGCAGCAG--------GACGCCCCAGTGAG----------ATGGGTTCGGGT------------CCTTCTCC----GGCCTTTGCACCAGCGCTGCTGTTCCGTGT-CTGCTCCGTTGGCAGTTCTGGTTCTCCAGAGGACCGAGGGCAGTGGACATCTGAGT-TCTGGAGGAGCAGAGTGATGATCTAGTCTTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128253271 383 + 137757926 CTCGTTCTTCTCTGGCTCACCCCAGCCTCCTACCAGA--GCCCA-----AATGCCTGGGCCCCTGCCTGGCC--GCCCCCATACTGCTTCCGTGTCCTCT-GGGGCCTCTG---TCTCCTGCTCTTCTCTC---CTTTTCCTT-----CCTTTC----------CTGCTTTGCCTTCTCTGTGCTATTCTCCTTCCACTTC---TGTCTTTC-----CATAG---CGTGGTCTGGGAGACTTCTGTGGCTTTCATTGAGCTTGCCT----------------------------------------------------------------GGCAGCAG--------GACGCCCCAGTGAG----------ATGGGTTCGGGT------------CCTTCTCC----GGCCTTTGCACCAGCGCTGCTGTTCCGTGT-CTGCTCCGTTGGCAGTTCTGGTTCTCCAGAGGACCGAGGGCAGTGGACATCTGAGT-TCTGGAGGAGCAGAGTGATGATCTAGTCTTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10651914 383 - 16319837 CTCGTTCTTCTCTGGCTCACCCCAGCCTCCTACCAGA--GCCCA-----AATGCCTGGGCCCCTGCCTGGCC--GCCCCCATACTGCTTCTGTGTCCTCT-GGGGCCTCTG---TCTCCTGCTCTTCTCTC---CTTTTCCTT-----CCTTTC----------CTGCTTTGCCTTCTCTGTGCTATTCTCCTTCCACTTC---TGTCTTTC-----CATAG---CGTGGTCTGGGAGACTTCTGTGGCTTTCATTGAGCTTGCCT----------------------------------------------------------------GGCAGCAG--------GACGCCCCAGTGAG----------ATGGGTTCGGGT------------CCTTCTCC----GGCCTTTGCACCAGCGCTGCTGTTCCGTGT-CTGCTCCGTTGGCAGTTCTGGTTCTCCAGAGGACCGAGGGCAGTGGACATCTGAGT-TCTGGAGGAGCAGAGTGATGATCTAGTCTTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12275560 384 + 20526591 CTCGTTCTTCTCTGGCTCACCCCAGCCTCCTACCAGA--GCCCA-----AATGCCTGGGCCCCTGCCTGGCC--GCCCCCATACTGCTTCCGTGTCCTCT-GGGGCCTCTG---TCTCCTGCTCTTCTCTC---CTTTTCCTT-----CCTTTC----------CTGCTTTGCCTTCTCTGTGCTATTCTCCTTCCACTTC---TGTCTTTC-----CATAG---CGTGGTCTGGGAGACTTCTGTGGCTTTCACTGAGCTTGCCT----------------------------------------------------------------GGCAGCAG--------GATGCCCCAGTGAG----------ATGGGTTCGGGT------------CCTTCTCC----GGCCTTTGCACCAGCGCTGCTGTTCTGTCTCCTGCTCCGTTGGCAGTTCTGGTTCTCCAGAGGACCAAGGGCAGTGGACATCTGAGT-TCTGGAGGAGCAGAGTGATGATCTGGTCTTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119247444 384 + 128539186 CTCGTTCTTCTCTGGCTCACCCCGGCCTCCTACCAGA--GCCCA-----AATGCCTGGGCCCCTGCCTGGCC--GCCCCCATACTGCTTCCATGTCCTCT-GGGGCCTCTG---TCTCCTGCTCTTCTCTC---CTTTTCCTT-----CCTTTC----------CTGCTTTGCCTTCTCTGTGCTATTCTCCTTCCACTTC---TGTCTTTC-----CATAG---TGTGGTCCGGGAGACCTCTGTGGCTTTCACTGACCTTGCCC----------------------------------------------------------------GGCAGCAG--------GATGCCCCAGTGAG----------ATGGGTTCGGTT------------CCTTCTCC----GGCCTTTGCACCAGCGCTGCTGTTCTGTGTCCTGCTCCGTTGGCAGTTCTGGTTCTCCAGAGGACCAAGGGCAGTGGACATCTGAGT-TCTGGAGGAGCAGAGTGATGATCTAGTCTTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 589429 384 + 6255621 CTCGTTCTTCTCTGGCTCACCCCAGCCTCCTACCAGA--GCCCA-----AATGCCTGGGCCCCTGCCTGGCC--GCCCCCATACTGCTTCCGTGTCCTCT-GGGGCCTCTG---TCTCCTGCTCTTCTCTC---CTTTTCCTT-----CCTTTC----------CTGCTTTGCCTTCTCTGTGCTATTCTCCTTCCACTTC---TGTCTTTC-----CATAG---CGTGGTCTGGGAGACTTCTGTGGCTTTCACTGAGCTTGCCT----------------------------------------------------------------GGCAGCAG--------GATGCCCCAGTGAG----------ATGGGTTCGGTT------------CCTTCTCC----GGCCTTTTCACTAGCGCTGCTGTTCTGTCTCCTGCTCCGTTGGCAGTTCTGGTTCTCCAGAGGACCAAGGGCAGTGGACATCTGAGT-TCTGGAGGAGCAGAGTGATGATCTAGTCTTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4624746 384 - 8658521 CTCATTCTTCTCTGGCTCACCCCAGCCTCCTACCAAA--GCCCA-----AATGCCTGGGCCCCTGCCTGGCT--GCCCCCATACTGCTTCCATGTCCTCT-GGGGCctctg---tctcctgctcttctctc---cttttcctt-----cctttc----------ctgctttgccttctctgtgctattctcttTCCACTTC---TGTCTTTC-----CATAG---CCTGGTCTGGGAGACTTCTGTGGCTTTCATTGACCTTGCCT----------------------------------------------------------------GGCAGCAG--------GATGCCCCAGTGAA----------ATGGGTTTGGTT------------CCTTCTCC----GGCCTTTGCACCAGTGCTGCTGTTCTGTCTCCTGCTCCGTTGGCAGTTCTGGTTCTCCAGAGGACCAAGGGCAGTGGACATCTGAGT-TCTGGAGGAGCAGAGTGATGATCTAGTCTTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114826107 355 + 124281992 CTCATTCTTCTCTGACTCACCCCAGCCTCCTAGCAGA--GCACA-----------------CGTGTCTGGCC--TCGCCCACGCTGCTTCCACGCACTCT-GGGGCCTCTG---TCTCCTGCCCTTCTCTCCTTCTTTTCCTT-----CCCCTC----------CTGCTTTGTGGTATCTGCACTGTT---CTTCCACTTC---CGTCTTTCC---TCACGG---TGTTGTCTGTGAGACTCCTGTGGCTTTCATTGACCTTGCCT----------------------------------------------------------------GGCAGTGG--------GAAGCCCCAG-----------------------------------------TCTCC----AGCCTTTGTACCGGCACTGCTGTTCTGTCTTCTGTTATGTTGGGAGTTCCAGTTCTCCAGAGGGCCAGGGACAGTGGATATCTGAGT-TCTGGAGGAGTGGAGTGGCGGTCTAGTCTCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 470646 348 - 9212255 CTCATTCTTCTCTGACTCACCCCAGCCTCCCACCTCA--GCGCA-----------------CATGCCGGGCC--TCCCCCACGCTGCTTCC-----------------CTG---CCTCCTGCCCTTCTCTGC-TCCTTTCCTT-----CCCCTC----------CTGCTTTGCCGCGTCTGCACTGTT---CTTCCACTTC---CGTCTTTCC---TCGCGG---TGTTGGCTGCGAGACTCCTGTGGCTTTCATTGACCTTGCCC----------------------------------------------------------------GGCAGTGG--------GAAGCCCCAG-------------------GCCGGTT------------CCTTCTCG----GGCCTTTGCACCAGCACTGCTGTTCTGTCTCCTGTTCTGTTGGGAGTTCCAGTTCTCCAGAGGGCCAGGGAGAGTGGAAATCTGAGT-TCTGGAGGAGTGGAGTGATGGTCTAGTCTCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2889680 365 + 4466143 ctcattcttctctGACTCACCCCAGCCTCCTGCCAGC--GCGCA-----------------CATGCCTGGCC--TCCCCCACGCTGCTTCCATGCACTCC-GGGGCCCCTG---CCTCCTGCCCTTCCCTGCTCCGTTTCCTC-----CCCCTC----------CTGCTTTGCCGTGTCTGCACTGTT---CTTCCGCTTC---CGTCTTTCC---TCACGG---TGTTCTCTGTGAGACTCCTGCGGCTTTCATTGACCTTGCCT----------------------------------------------------------------GGCAGTGG--------GAAGTCCCAG-------------------GCCGGTT------------CCTTCTCC----GGCCTTTGCCCCAGCACCGCTGTTCTGTCTCCTGTTCTGTTGGGAGTTCCAGTTCTCCAGAGGGCCAGGGACAGTGGATATCTGAGT-TCTGGAGGAGCGGAGTGACAGTCTAGTCTCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1591730 367 + 5364348 CTCATTCTTCTCTGACTCACCCCAGCCTCCTACCAGA--GCACA-----------------CATGCCTGGCC--TCCCCCACGCTGCTTCCA-GCACTCC-GGGGCCTCTG---TCTCCTGCCCTTCTCTCCTCCTTTTCCTT-----CCCCTC----------CTGCTTTGCCGTGTCTGCACTGTTCTCCTTCCACTTC---CATCTTTCC---TCATGG---TGTTGTCTGCGAGACTCCTGTGGCTTTCATTGACCTTGCCT----------------------------------------------------------------GGCAGTGG--------GAAGGCCCAG-------------------GCCGGTT------------CCTTCTCC----GGCCTTTGCACCAGCACTGCTGTCCTGTCTCCTGTTCTGTTGGGAGTTCCAGTTCTCCAGAGGGCCAGGGACAGTGGATATCTGAGT-TCTGGAGGAGTGGAGTGACGGTCTAGTCTCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4314522 324 + 7922563 C-CTTTCTTTTGTGGCTCCCCTCAGCCTCCTGCTGGA--GTAGGACAGTAAGGCCGGGGCTGCAACCT-GTG--TTCCAAATGCTACATCCAAACACTTT-GGAGCCTCCA---TTTCCTTCTCTTCTCACCGtcttttcctt-----tctttcctttttttttcttttttgccttttctGTATCAGTCTCCTTCTGCTTC---TGTCTCTC-----------------------------TTTGTAGCTTTTGTGGGCTTTGCCA----------------------------------------------------------------GGCAGTGG--------GAAG--CCAGTG--------------------GGTA------------CTCTCTCTGGGAGGCCTTTGCCCTAAGGCT--------GTCTCCAGTTCCTGTAG-GGACCTGGTTCTCTGGAGGGTCAAGAACAGAGGGCA--------------------------------------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33168174 379 - 38964690 ------------------------GGCTCCTGGTGG-------------ACTGGCTGGGGTTCCACCTCACCCTGCTCCTAGACTG-TCCTGTGCCCTTCAGGGGCCTCTGTCATCTCCGCCTCTTCTCTCCTCCTTTTCTTT-----CCTTCC-------------CTTCACCTCTTCTTCATCATTTTCCGTATGCTTC---TGTCTCTCTTCATCATTT---TGGTGTCTGCAGGACTCATGTGTCTTTTAGAGACTTTGCCC----------------------------------------------------------------AGCAGCAGACAGCCAAGAGCCCCCCCTGGGTACAGTTAACATGCCACCCATT------------CCTTCTTC----TGTCTCT--ACCAGACCTGCTGTGCTGTGTCCCCTTCCCTCG--AGTCTCAGTTCCCTGGAGGGTTGAGGGTACTGGACATCTGAGTGTTTGGAGCAGCAGAGTGATGGTCTGGTCTCA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 850251 458 - 1116856 CTCTCCCTTCCCTGGGTCAGCCTGGCTTCCTAAGAGACTGCTCA----AAATGGCCGGGCCTCTGCTTCGTC--CTACCCAGGCTGTTTCCATGTCCTCC-ACGGCCTCTGTCATCTCCTGTGcttctctcttccttttcttttgttccttcct----------tttctttgccttttccacattgtttc-cttctgctcctcttatctctt-----cGTGGATTTGGCGTCTGCATGGCTTACATGACCTTTACAGACTTTGCCTCCCCCATCCTACAACTGGCAACTTCCCACTCTCCAGACTTGTCTCAGCTTAAATGCCTCTTCTCAGGAGTGG--------GAAGCCTGAGCAGT--------CCATGGGCACAGTTACGGAAGAGCCATCTTCTCA----GACCTTCACATCAGTGCTGCTCCTC---CTCTTGTTC-------------------CTGGTGGGCTGAGGG-ACTGGCCATCTAAAT-GTTGGAGAAGCACAGTGATGATCTAGTCGCA i dasNov3.JH568189 M 163 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6728713 543 - 9870158 I a score=954030.000000 s hg38.chr12_KI270834v1_alt 82191 78 + 119498 TCAAAGCCACAGAACACAATTACGGGGCAACATAGCCTGGAAAGAGCCCAGGATGCGGGGACCCCAGGCTTCCCAGGC s panTro5.chr12 127368142 78 + 137163284 TCAAAGCCACAGAACACAATTACGGGGCAACATAGCCTGGAAAGAGCCCAAGATGCGGGGACCCCAGGCTTCCCAGGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125719249 78 + 135337776 TCAAAGCCACAGAACACAATTACGGGGCAACATAGCCTGGAAAGAGCCCAAGATGCGGGGACCCCAGGCTTCCCAGGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8232615 78 - 8369578 TCAAAGCCACAGAACACAATTACGGGGCAACATAGCCTGGAAAGAGCCCAGGATACGGGGACCCCAGGCTTCCCAGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890891 78 + 106955855 TCAAAGCCACAGAAAACAATTACGGGGCAACATAGCCTGGAAAGAGCCCAGGATGCAGAGACCCCAGGCCTCCCAGGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124005553 78 + 133663169 CCAAAGCCACAGAGAACAATTACGGGGCAGCATAGGCTGGAAAGAGCCCAGGATGCAGGGACCCCAGGTCTCGCAGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128253654 78 + 137757926 CCAAAGCCACAGAGAACAATTACGGGGCAGCATAGGCTGGAAAGAGCCCAGGATGCAGGGACCCCAGGTCTCGCAGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10652297 78 - 16319837 CCAAAGCCACAGAGAACAATTACGGGGCAGCATAGGCTGGAAAGAGCCCAGGATGCAGGGACCCCAGGTCTCGCAGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12275944 78 + 20526591 CCAAAGCCACAGAGAACAATTACGGGGCAGCATAGGCTGGAAAGAGCCCAGGATGCAGGGACCCCAGGCCTCGCAGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119247828 78 + 128539186 TCAAAGCCACAGAAAACAATTACGGGGCAGCACAGGCTGGAAAGAGCCCAGGATGCAGGGACCCCAGGTCTCGCAGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 589813 78 + 6255621 CCAAAGCCACAGAGAACAATTACGGGGCAGCATAGGCTGGAAAGAGCCCAGGATGCAGGGACCCCAGGTCTCGCAGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4625130 78 - 8658521 TCAAAGCCACAGAAAACAATTACAGGGCAGCATAGGCTGGAAAGAGCCCAGGATGCAGGGACCCCAGGTCTCGAAGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114826462 78 + 124281992 TCAAAGCCACAGAAAACAGTTACGGGGCACCATAGCCTGGGAAGAGCCCAGGATGCAGGCAAGCCAGGCCTCCCAGGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 470994 78 - 9212255 TCAAAGCCACAGAAAACAGTTACAGGGCAGCATAGCCTGGGAAGAGCCCAGGATGCAGGCAAGCCAGGCCTCCCAGGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2890045 77 + 4466143 TCAAAGCCACAGAAAAGAGTTACGGGGCAGCATAGCCTGGGAAGAGCCC-GGGTGCAGGCAAGCCAGCCCTCCCAGGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1592097 77 + 5364348 TCAAAGCCACAGAAAACAG-TACGGGGCACTAGAGCCTGGGAAGAGCCCAGGATGCAGGCAAGCCAGGCCTCCCAGGC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6729256 78 - 9870158 TCAAAGCCAAAGAAAACAAATTTGGGGCAACGCAGCCTGGAAAGAGCCCTAGAGGCAGGGACCCCGGACCTCCCAGGC i proCoq1.NW_012154285v1 I 543 I 397 s otoGar3.GL873618 4314846 56 + 7922563 ----------------------AGGGGCAACATAGCCTGGAAAGAGGCCTGGACGTGGGGACCCAAGGCCTCCCAGGC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33168553 77 - 38964690 TCAAAGACAAAGGAAATGGTGAAGGAGTGACATAG-CTGGAaggagcccaggatgtagggatcccagaccccataggc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 850709 76 - 1116856 TCAAAGACAAGGACAGCAATTACATGACAGCGTAGCCTGGagaaagcccaggg-gtggggacctgagacctcctggc- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I a score=2408193.000000 s hg38.chr12_KI270834v1_alt 82269 249 + 119498 GGTGTCAGCACAGCCA-GTCATGCAAGCTCCCAGGACCCTGTTTGTCCATCTAGTAAATGG-GGAGAgataa---tggt-----tggtggtgatggtgatggtgatgatgatgatgataatgacaataatgaCGGCAGCCAC------CATTTAGAGTCTGAGgaatcagccgagggtgtaattaaaa-cataggtgctcaggc----tgccccctaa-ccactgatccagacgctccggggacggcctgggtttgtattttaatg-ctgcc-------------- s panTro5.chr12 127368220 254 + 137163284 GGTGTCAGCACAGCCA-GTCATGCAAGCTCCCAGGACCCTGTTTGTCCATCTAGTAAACGG-GGAGAgataa---tggtggtggtggtggtggtggtgatgatgatgatgataatgataatgacaataatgaCGGCAGCCAC------CATTTAGAGTCTGAGgaatcagccgagggtgtaattaaaa-cataggtgctcaggc----tgccccctaa-ccactgatccagacgctccggggacggcctgggtttgtattttaatg-ctgcc-------------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125719327 248 + 135337776 GGTGTCAGCACAGCCA-GTCATGCAAGCTCCCAGGACCCTGTTTGTCCATCTAGTAAACGG-GGAGAgataa---tgg------tggtggtggtggtggtggtgatgatgatgatgataatgacaataatgaCGGCAGCCAC------CATTTAGAGTCTGAGgaatcagccgagggtgtaattaaaa-cataggtgctcaggc----tgccccctaa-ccactgatccagacgctccggggatggcctgggtttgtattttaatg-ctgcc-------------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8232693 248 - 8369578 GGTGTCAGCACAGCCA-GTCATGCAAGCTCCCAGGACCCTGTTTGTCCATCTAGTAAATGG-GGAGAgataa---tgg------tggtggtggtggtgatggtgatgatgatgatgataatgacaataatgaCAGCAGCCAC------CATTTAGAGTCTGAGgaatcagccgagggtgtaattaaaa-cataggtgctcaggc----tgccccctaa-ccactgatccagacgctctggggacggcctgggtttgtattttaatg-ctgcc-------------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97890969 239 + 106955855 AGCGTCAGCACAGCCA-GTCATGCAAGCTCCCAGGACCCTGTTTATCCATCCAGTAAATGG-GGAAAgatga---tgg---------------tggtggtgatgatggtgatggtgatAAAGACAATAATGACCGCAGCCAC------CATTTAGACTCTGAagaatcagccgagggtgtaattaaaa-cgtaggtgctcaggc----tgctccctaa-ccactgatccagacgctccggggatggcctgggtttgtattttaaTG-CTGCC-------------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124005631 243 + 133663169 GGTGTCAGCACAGCCA-GTCATGGAAGCTCCTGGGACCCTGTTTCTCCATCTAGTAAATGG-GGAAAGATGA---CGG------TG-----GGTAGtgatagtggtgatgatgatgataatgacaataatgaCAGCAACCAC------CATTTAGAGTCTGGGGAatcagccgagggtgtaattaaaa-cataggtgcttaggc----tccaccctaa-ccactgatccagacgctccggggatggcctgggtttgtattttaaTG-CTGTC-------------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128253732 243 + 137757926 GGTGTCAGCACAGCCA-GTCATGGAAGCTCCTGGGACCCTGTTTCTCCATCTAGTAAATGG-GGAAAGATGA---CGG------TG-----GGTAGtgatagtggtgatgatgatgataatgacaataatgaCAGCAACCAC------CATTTAGAGTCTGGGGAatcagccgagggtgtaattaaaa-cataggtgctcaggc----tccaccctaa-ccactgatccagacgctccagggatggcctgggtttgtattttaaTG-CTGTC-------------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10652375 243 - 16319837 GGTGTCAGCACAgcca-gtcatggaagctcctgggaccctgtttctccatctagtaaatgg-ggaaagatga---tGG------TG-----GGTAGtgatagtggtgatgatgatgataatgacaataatgaCAGCAACCAC------CATTTAGAGTCTGGGgaatcagccgagggtgtaattaaaa-cataggtgctcaggc----tccaccctaa-ccactgatccagacgctccagggatggcctgggtttatattttaatg-ctgtc-------------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12276022 242 + 20526591 GGTGTCAGCACAgcca-gtcatggaagctcctgggaccctgtttctccatctagtaaatgg-ggaaagatga---tGG------t------ggtagtgatagtggtgatgatgatgataatgacaataatgaCAGCAACCAC------CATTTAGAGTCTGAGGAatcagccgagggtgtaattaaaa-cataggtgctcaggc----tccaccctaa-ccactgatccagacgctccggggatggcctgggtttgtattttaaTG-CTGTC-------------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119247906 246 + 128539186 GGTGTCAGCACAGCCA-GTCATGCAAGCTCCCGGGACCCTGTTTCTCCATCTAGTAAATGG-GGAAAgatga---tgg------t------gatagtgatagtggtgatgatgatgttaatgacaataatgaCAGCAACCAC------CATTTAGAGTCTGAGgaatcagccgagggtgtaattaaaa-cataggtgctcaggctccatccaccctaa-ccactgatccagacgctctggggatggcctgggtttgtatttTAATG-CTGTC-------------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 589891 242 + 6255621 GGTGTCAGCACAGCCA-GTCATGGAAGCTCCTGGGACCCTGTTTCTCCATCTAGTAAATGG-GGAAAgatga---tgg------t------ggtagtgatagtggtgatgatgatgataatgacaataatgaCAGCAACCAC------CATTTAGAGTCTGAGGAatcagccgagggtgtaattaaaa-cataggtgctcaggc----tccaccctaa-ccactgatccagacgctccggggatggcctgggtttgtattttaaTG-CTGTC-------------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4625208 242 - 8658521 GGTGTCAGCACAgcca-gtcatgcaagctcctgggaccctgtttctccatctagtaaatgg-ggaaagatga---tGG------t------ggtagtgatagtggcgatgatgatgataatgacaataatGACAGCAACCAC------CATTTAGAGTCTGAGGAatcagccgagggtgtaattaaaa-cataggtgctcaggc----ttcaccctaa-ccactgacccagacgctccggggatggcctgggtttgtattttaatg-ctgtc-------------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114826540 224 + 124281992 AGTGTCAGCGCAGCCA-GTCATGCAGGCTCCCAGGGCCCTGCTTCTTCGTCTAGTAAAC-G-GGAAAGAAGA---CGG------T------GGTGGTGGTGATGATGATGTC------------AGCAATGATGGCAGCGCC------------TAGTCTGAGGGATCAGCCAAGGGTGTAATTAaaa-catagatgctcaggc----tccaccctaacccactgatccggacgcccctggggcgacctgggtttgtattttaatg-ctgcc-------------- i calJac3.chr9 C 0 I 3 s saiBol1.JH378194 471072 231 - 9212255 AGCGTCA-CACAGCCA-GTCATGAGGGTTCCCAGGGCCCTGCTTCTTCATCTAGTACAT-G-GGAAAGAAGATGCTGG------T------GGTGGTGCTGGTGGTGATGAC------------AGTAATGCCGGCAGCGCC-------ATTTATAGTCGGAGGGatcagccaggggtgtaatgaaaa-cacagatgctcaggc----tccaccctgaccctctgatccagactcccttggggcgacccggctttgtattttaaTG-CTGCC-------------- i saiBol1.JH378194 C 0 I 3 s cebCap1.NW_016107484v1 2890122 225 + 4466143 A--GTCAGCACAGCCA-GTCGTGCAGGCTCCCAGGGCCCTGCTTCTTCATCTCGGACAC-G-GGAAAGAAGA---tgg------t------ggcggtggtggtggtgatgAC---------------ACTGCCGGCAGCCAT------TGTTTATAGTCAGAGGGATCAGCCGAGGGTGTGATTAAAA-CACAGATGCTCAGGC----TCCACCCTGACCCGCTGGTCCAGACTCCCCTGGGGCGACCTGGGTTTGTATTTTAATG-CTGCC-------------- i cebCap1.NW_016107484v1 C 0 I 3 s aotNan1.NW_018491581v1 1592174 233 + 5364348 AGTGTGAGCACAGCCA-GTCATGCAAGCTCCCAGGGCCCTGCTTCTTCATCTAGTAAAC-G-GGGGAGAAGA---tgg------t------ggtggtggtggtggtgatgAT---------------AATGACAGTAACGCCGGCCGCCATTTATAGTCGGAGGGATCAGCCAAGGGTGTAATTAaaa-catagatgctcaggc----tccaccctaacccactgatccagacgcccctggggcgacctgggtttgtattttaatg-ctgcc-------------- i aotNan1.NW_018491581v1 C 0 I 26 s otoGar3.GL873618 4314902 197 + 7922563 ---------------T-GTCATTCAAGTGCTCAGAGTCCCCTTTCTTCATCTAGTCATC-G-GGAAAAatga---tga------t------gatgttcatgataatggtgat---------------aatgaCAGCAGCCAC------CATTTAGAGTCTGAGGAGTCACCCCAGGATGTAATTAAGA-CACAGATTCTCAGGC----TCCACCCTGG----------------CTCCAGGGGCAGCCTGGATGTGTGTTTTAAAGACCACC-------------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33168630 228 - 38964690 tgtgtgaacatgggcaggccatccaaatactctgagtcctgtaccttcatctaataaat-g-gaaaatagga---tga------t------gaCAAAGAGGAGGTGGAGGAT---------GGCAATAATGCCAGTGGCTAC------ATGACAGAGTCTGAGGAGCTACCCCAGGGCGTAAttagag--acggattcttagac----tccaccctggcctactgactcagatgctt--ggggtagcctgggtttgca-tttaatg---gtc-------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 850785 247 - 1116856 agggcgcacataggcaggtcatccaagcaccctgaggcctgtttcctcatctaataaatggtgaaaataggc---tga------t------ggtGGTGGTGGTGATGATGAT------------ATTAATAACAGCAGCTAC------CATTTAAGGTCTGAAGAATCACCCCAGGGCATAAttaaaaacacagattctgaggc----tccactctgacctactgtgtcagacactctggggCCG-TCTGGGTTTGCCCTTAAATA-ATATTTCTTTAATCCCACT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6729334 397 - 9870158 I a score=53316.000000 s hg38.chr12_KI270834v1_alt 82518 9 + 119498 --------cccgcacca-- s panTro5.chr12 127368474 9 + 137163284 --------cccgcacca-- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125719575 9 + 135337776 --------cccgcacca-- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8232941 9 - 8369578 --------cccgcacca-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97891208 9 + 106955855 --------CCCGCACCG-- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124005874 9 + 133663169 --------CCTGCACCA-- i rheMac8.chr11 C 0 I 13 s macFas5.chr11 128253975 9 + 137757926 --------CCTGCACCA-- i macFas5.chr11 C 0 I 13 s macNem1.NW_012010578v1 10652618 9 - 16319837 --------cctgcacca-- i macNem1.NW_012010578v1 C 0 I 13 s cerAty1.NW_012001186v1 12276264 9 + 20526591 --------CCTGCACCA-- i cerAty1.NW_012001186v1 C 0 I 13 s chlSab2.chr11 119248152 9 + 128539186 --------CCTGCACCA-- i chlSab2.chr11 C 0 I 13 s manLeu1.NW_012103587v1 590133 9 + 6255621 --------CCTGCATCA-- i manLeu1.NW_012103587v1 C 0 I 13 s colAng1.NW_012116043v1 4625450 9 - 8658521 --------cctgcaccg-- i colAng1.NW_012116043v1 C 0 I 13 s calJac3.chr9 114826767 9 + 124281992 --------cccccacca-- i calJac3.chr9 I 3 I 11 s saiBol1.JH378194 471306 9 - 9212255 --------CCCCTACCA-- i saiBol1.JH378194 I 3 I 13 s cebCap1.NW_016107484v1 2890350 9 + 4466143 --------TCCCCACCG-- i cebCap1.NW_016107484v1 I 3 I 13 s otoGar3.GL873618 4315099 4 + 7922563 -------------CCCA-- i otoGar3.GL873618 C 0 I 15 s canFam3.chr26 33168858 9 - 38964690 --------cccgccccc-- i canFam3.chr26 C 0 I 21 s dasNov3.JH568189 851032 19 - 1116856 TCCATAATTCTGAAGCCCA i dasNov3.JH568189 C 0 I 6 e micMur3.chr21 9475708 1197 - 31815103 I e mm10.chr5 124813998 360 + 151834684 I e proCoq1.NW_012154285v1 6729334 397 - 9870158 I e aotNan1.NW_018491581v1 1592407 26 + 5364348 I a score=15561.000000 s hg38.chr12_KI270834v1_alt 82527 1 + 119498 t s panTro5.chr12 127368483 1 + 137163284 t i panTro5.chr12 C 0 C 0 s panPan2.chr12 125719584 1 + 135337776 t i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8232950 1 - 8369578 t i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97891217 1 + 106955855 T i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124005896 1 + 133663169 T i rheMac8.chr11 I 13 C 0 s macFas5.chr11 128253997 1 + 137757926 T i macFas5.chr11 I 13 C 0 s macNem1.NW_012010578v1 10652640 1 - 16319837 T i macNem1.NW_012010578v1 I 13 C 0 s cerAty1.NW_012001186v1 12276286 1 + 20526591 T i cerAty1.NW_012001186v1 I 13 C 0 s chlSab2.chr11 119248174 1 + 128539186 T i chlSab2.chr11 I 13 C 0 s manLeu1.NW_012103587v1 590155 1 + 6255621 T i manLeu1.NW_012103587v1 I 13 C 0 s colAng1.NW_012116043v1 4625472 1 - 8658521 t i colAng1.NW_012116043v1 I 13 C 0 s calJac3.chr9 114826787 1 + 124281992 T i calJac3.chr9 I 11 C 0 s saiBol1.JH378194 471328 1 - 9212255 T i saiBol1.JH378194 I 13 C 0 s cebCap1.NW_016107484v1 2890372 1 + 4466143 T i cebCap1.NW_016107484v1 I 13 C 0 s otoGar3.GL873618 4315118 1 + 7922563 T i otoGar3.GL873618 I 15 C 0 s mm10.chr5 124814358 1 + 151834684 T i mm10.chr5 I 360 C 0 s canFam3.chr26 33168888 1 - 38964690 t i canFam3.chr26 I 21 C 0 s dasNov3.JH568189 851057 1 - 1116856 T i dasNov3.JH568189 I 6 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e proCoq1.NW_012154285v1 6729334 397 - 9870158 I e aotNan1.NW_018491581v1 1592407 26 + 5364348 I a score=2265388.000000 s hg38.chr12_KI270834v1_alt 82528 218 + 119498 tccaGGCGCCTGGTCTGGAACCTGAGAG-GGGGA--CCCGGCCCTGCCCTTAGGGACGCTCCCGCCCAGGAGTGCGGTTTGTGTTGGGACCTGGCTTCTTTCGTTTGCTTGCAGCAGTAGCTCCAGGGACTGTCTTTTGGTTGAGCTCGTTTTTCTGGAGCTCT---CTTTCAGGCCAGATCCTGGCCACATCCCGGGGTTGTGACCCAC-----------------GTGCCTTGGTTTCT s panTro5.chr12 127368484 220 + 137163284 tccaGGAGCCTGGTCTGGAACCTGAGAG-GGGGA--CCCGGCCCTGCCCTTAGGGACGCTCCCGCCCAGGAGTGCCGTTTGTGTTGGGACCTGGCTTCTTTCGTTTGCCTGCAGCATCAGCTCCAGGGACTGTCTTTTGGTTGAGCTCGTTTTTCTGGAGCTCT---CTTTCAGGCCAGATCCTGGCCACATCCCGGGGTTGTGACCCAC---------------GTGTGCCTTGGTTTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125719585 220 + 135337776 tccaGGAGCCTGGTCTGGAACCTGAGAG-GGGGA--CCCGGCCCTGCCCTTAGGGACGCTCCCGCCCAGGAGTGCCGTTTGTGTTGGGACCTGGCTTCTTTCGTTTGCCTGCAGCATCAGCTCCAGGGACTGTCTTTTGGTTGAGCTCGTTTTTCTGGAGCTCT---CTTTCAGGCCAGATCCTGGCCACATCCCGGGGTTGTGACCCAC---------------GTGTGCCTTGGTTTCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8232951 220 - 8369578 tccaGGCGCCTGGTCTGGAACCTGAGAG-GGGGA--CCCCGCCCTGCCCTTAGGGACGCTCCCGCCCAGGAGTGCGGTTTGTGTTGGGACCTGGCTTCTTTCGTCTGCATGCAGCATCAGCTCCAGGGACTGTCTTTTGGTTGAGCTCCTTTTTCTGGAGCTCT---CTTTCAGGCCAGATCCTGGCCACATCCCGGGGTTGTGACCCAC---------------GTGTGCCTTGGTTTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97891218 220 + 106955855 TCCAGGTGCCTGGTCTGGAACCTGAGAG-GGGGA--CCCGGCCCCGCCCTTAGGGACTCTCCCACCCAGGAGTGCGGTTTGTGTTGGGACCTGGCTTCTTTCGTTTGCATGCAGCATCAGCTCCAGGGACTGTCTTTTGGTTGAGCTCCTTTTTCTGGAGCTCT---CTTTCAGGCCAGATCCTGGCCACATCCTGGGATTGTGACCCAT---------------GTGTGCCTTGGTTTCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124005897 218 + 133663169 TCCAGGCGCCTGGTCTGGAACCTGAGAG-GGGGA--CCCGGCCCCGCCCTTAGGGACGCTCCCACCCAGGAGTGCGGTTTGTGTTGGGACCTGGCTTCTTTCGTTTCCATGCAGCATCAGCTCCAGGGACTGCTGTTTAGTTGAGCTCCTTTTTCTGGAGCTCT---CTTTCAGGCCAGATCCTGGCCACATCCCTGGAC--TGACCCAC---------------GTGTGCCTTGGTTTCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128253998 218 + 137757926 TCCAGGCGCCTGGTCTGGAACCTGAGAG-GGGGA--CCCGGCCCCGCCCTTAGGGACGCTCCCACCCAGGAGTGCGGTTTGTGTTGGGACCTGGCTTCTTTCGTTTCCATGCAGCATCAGCTCCAGGGACTGCCTTTTAGTTGAGCTCCTTTTTCTGGAGCTCT---CTTTCAGGCCAGATCCTGGCCACATCCCTGGAC--TGACCCAC---------------GTGTGCCTTGGTTTCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10652641 218 - 16319837 TCCAGGCGCCTGGTCTGGAACCTGAGAG-GGGGA--CCCGGCCCCGCCCTTAGGGACGCTCCCACCCAGGAGTGCGGTTTGTGTTGGGACCTGGCTTCTTTCGTTTCCATGCAGCATCAGCTCCAGGGACTGCCTTTTAGTTGAGCTCCTTTTTCTGGAGCTCT---CTTTCAGGCCAGATCCTGGCCACATCCCTGGAC--TGACCCAC---------------GTGTGCCTTGGTTTCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12276287 218 + 20526591 TCCAGGCGCCTGGTCTGGAACCTGAGAG-GGGGA--CCCGGCCCCGCCCTTAGGGACGCTCCCACCCAGGAGTGCGGTTTGTGTTGGGACCTGGCTTCTTTCGTTTCCATGCAGCATCAGCTCCAGGGACTGCCTTTTAGTTGAGCTCCTTTTTCTGGAGCTCT---CTTTCAGGCCAGATCCTGGCCACATCCCTGGAC--TGACCCAC---------------GTGTGCCTTGGTTTCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119248175 218 + 128539186 TCCAGGCGCCTGGTCTGGAACCTGAGAG-GGGGA--CCCGGCCCCGCCCTTAGGGACGCTCCCACCCACGAGTGCGGTTTGTGTTGGGACCTGGCTTCTTTCGTTTCCATGCAGCATCAGCTCCAGGGACTGCCTTTTAGTTGAGCTCCTTTTTCTGGAGCTCT---CTTTCAGGCCAGATCCTGGCCACATCCCTGGAC--TGACCCAC---------------GTGTGCCTTGGTTTCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 590156 218 + 6255621 TCCAGGCGCCTGGTCTGGAACCTGAGAG-GGGGA--CCCGGCCCCGCCCTTAGGGACGCCCCCACCCAGGAGTGCGGTTTGTGTTGGGACCTGGCTTCTTTCGTTTCCATGCAGCATCAGCTCCAGGGACTGCCTTTTAGTTGAGCTCCTTTTTCTGGAGCTCT---CTTTCAGGCCAGATCCTGGCCACATCCCTGGAC--TGACCCAC---------------GTGTGCCTTGGTTTCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4625473 218 - 8658521 gcCAGGCGCCTGGTCTGGAACCTGAGAG-GGGTA--CCCGGCCCCGCCCTTAGCGACGCTCCCACCCAGGAGTGCAGTTTGTGTTGGGACCTGGCTTCTTTTGTTTCCATGCAGCATCAGCTCCAGGCACTGCCTTTTAGTTGAGCTCCTTTTTCTGGGGCTCT---CTTTCAGGCCAGATCCTGGCCACATCCCTGGAC--GAACCCAC---------------GTGTGCCTTGGTTTAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114826788 171 + 124281992 TCCAGTCGCCTGGTCTGGAACCCGAGAG-GGGAA--CCCGGCCCTACCCTCGGGGACACTCCCACCCAGGAGTGCGATTTGTGCTGGGGCCTGGCTTCCTTTGCTTCCATGCAGAGTCAGCT-----------------------CTGTGGTTTCCAGAGCCCT---CTCTCAGGC--------------------------TGACCCAT---------------GTGTGTCTTGGTTTCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 471329 194 - 9212255 TCCAGGCGCCTGGTCTGGAACATGAGAG-GGGAA--CCCGGCCCCACCCTCGGGGACACTCCCACCCAGGAGTGCGATTTGTGTGGGGACCTGGCTTCCTTTGTTTCCACGCAGAGTCAGCTCCAGGGATAGTGTTTTGGTTGAGCTGTTTTTTCTGGAGCTCT---CTTCCAGGC--------------------------TGACCCAT---------------GTGTGTCTTGGTTTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2890373 194 + 4466143 TCCAGGTGCCTGGTCTGGAACGTGAGAG-GGGAA--CCTGTCCCCACCCTCGGGGACACTCCCACCCAGGAGTGCGATTTGTGTTGGGACCTGGCTTCCTTTGTTTCCATGCGGAGTCAGCTCCAGGGATCGTGTTTTGGTTGAGCTGTTTTTTCCAGAGCTCT---CTTTCAGGC--------------------------TGACCCAC---------------GTGTGTCTTGGTTTCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1592433 194 + 5364348 TCCAGGCACCTGGTCTGGAACCTGAGAG-GGGAA--CCCGGCCCCACCCTTGGGGACATTCCCACCCAGGAGTGCGGTTTGTGTTGGGACCTGGCTTCCTTTGTTTCCACACAGAGTCAGCTCCAGGGATCGCGTTTTGGTTGAGCTATTTTTTCTGGAGCTCT---CTTTCAGGC--------------------------TGACCCAT---------------GTGTGTCTTGGTTTCT i aotNan1.NW_018491581v1 I 26 C 0 s otoGar3.GL873618 4315119 209 + 7922563 ---TGACTTTGAGATGGGACCCTGAGAG-GAGAC--CCTGACCCTGTCCTCAGGGATCCTCCTGTGCAGGAACCCAGTCTGTGCTGAGGTCTGGTGTCCTTTGTTTCCATTGAGCGTCACCTCTAGTGAATGACTTCTGGGTGA-CCATTTTGCCTGGAG--CT---CTTCCAGGCCAGCTCCT-GCCATATCCAGGGTC--TA--TCGT---------------GTGTGCTTTTGTTCCC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124814359 185 + 151834684 TCCAGGAGCCTGGTGTGGGGCTATCACA-TGAGA--CCCTTCCTGGTTC------ACTGTCCTCCC---------------TCTAGGAACTAGGCACCCTCCATTCCCAGGCAGTG--ACCTCCAGGGA--GCCCTTGTGCCTGCCTCTTCTCCCCCAACCCCTGAGAATTCTGGCTAGGTCCTGGTCTCTC----------TGA---AC---------------ACGGGCCCTCTTGTCG i mm10.chr5 C 0 C 0 s canFam3.chr26 33168889 218 - 38964690 tcgaggaGACTGATCTGGCACCTGATGGCTGAGA--CCAGTCCCTGCCCTGGGAGAAGCGCACCTGAGGCGCCCCAGTCCATGTTGGGATATGGCTTTCTCTGCTTCCAATCAGTGTCACCTCTAAGAAATGACTCTGGGTTGAGCCATTTTTTGTGGAACTCT---CACTCAGGCTAGATCGCGGCCAC-TTCTGGGTC--TGATTCAC---------------ACACGTTCTTGTTTCT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 851058 221 - 1116856 TCCAGTCACCTGGTCTAGAACCTGGTGG-ACAAAACTCAGTCCCTGCCCTCAGAGA--------------AATCCAGCTTCCTATTGGATGTGGCTCCCCTGGTTTTCAGGCATTATCACCTCCACGAAATGACTTTTGGTTGAATTACCCTTTTCAGAGCTTT---CATTCAGGCCAGATCATGGCCACAGCCCACATC--TGATCTACTTTCTCACCCCACCTGCATGCTCTCCTTTCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I e proCoq1.NW_012154285v1 6729334 397 - 9870158 I a score=6674.000000 s hg38.chr12_KI270834v1_alt 82746 1 + 119498 T s panTro5.chr12 127368704 1 + 137163284 T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125719805 1 + 135337776 T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8233171 1 - 8369578 T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97891438 1 + 106955855 T i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124006115 1 + 133663169 C i rheMac8.chr11 C 0 I 8 s macFas5.chr11 128254216 1 + 137757926 C i macFas5.chr11 C 0 I 8 s macNem1.NW_012010578v1 10652859 1 - 16319837 C i macNem1.NW_012010578v1 C 0 I 8 s cerAty1.NW_012001186v1 12276505 1 + 20526591 C i cerAty1.NW_012001186v1 C 0 I 8 s chlSab2.chr11 119248393 1 + 128539186 T i chlSab2.chr11 C 0 I 8 s manLeu1.NW_012103587v1 590374 1 + 6255621 C i manLeu1.NW_012103587v1 C 0 I 8 s colAng1.NW_012116043v1 4625691 1 - 8658521 T i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114826959 1 + 124281992 T i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 471523 1 - 9212255 T i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2890567 1 + 4466143 T i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1592627 1 + 5364348 T i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6729731 1 - 9870158 T i proCoq1.NW_012154285v1 I 397 C 0 s otoGar3.GL873618 4315328 1 + 7922563 T i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124814544 1 + 151834684 C i mm10.chr5 C 0 C 0 s canFam3.chr26 33169107 1 - 38964690 C i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 851279 1 - 1116856 C i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9475708 1197 - 31815103 I a score=3792336.000000 s hg38.chr12_KI270834v1_alt 82747 192 + 119498 GCCAGGTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGCGAATGCATCCTCATCATGAAAGGGTACAAAGAGCTGAACTGGAAAACAGCCAAGGGCGTGATGTCCGACCCGAATTTCCTGCGGTCTCTGATGGAGATTGATTTTGATTCGATTACCCAGAGCCAAGTGAAAAACATCAAAGGTGAG s panTro5.chr12 127368705 192 + 137163284 GCCAGGTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGCGAATGCATCCTCATCATGAAAGGGTACAAAGAGCTGAACTGGAAAACAGCCAAGGGCGTGATGTCCGACCCGAATTTCCTGCGGTCTCTGATGGAGATTGATTTTGATTCAATTACCCAGAGCCAAGTGAAAAACATCAAAGGTGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125719806 192 + 135337776 GCCAGGTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGCGAATGCATCCTCATCATGAAAGGGTACAAAGAGCTGAACTGGAAAACAGCCAAGGGCGTGATGTCCGACCCGAATTTCCTGCGGTCTCTGATGGAGATTGATTTTGATTCAATTACCCAGAGCCAAGTGAAAAACATCAAAGGTGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8233172 192 - 8369578 GCCAGGTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGCGAATGCATCCTCATCATGAAAGGGTACAAAGAGCTGAACTGGAAAACAGCCAAGGGCATGATGTCCGACCCGAATTTCCTGAGGTCTCTGATGGAGATTGATTTTGATTCGATTACCCAGAGCCAAGTGAAAAACATCAAAGGTGAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97891439 192 + 106955855 GCCAGGTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGCGAATGCATCCTCATCATGAAAGGGTATAAAGAGCTCAACTGGAAAACCGCCAAGGGCATGATGTCCGACCCGAATTTCCTGAGGTCTCTGATGGAGATTGATTTTGATTCGATTACCCAGAGCCAAGTGAAAAACATCAAAGGTGAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124006124 192 + 133663169 GCCAGGTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGTGAATGCATCCTCATCATGAAGGGGTACAAAGAGCTCAACTGGAAAACCGCCAAGGGCATGATGTCCGACCCGAATTTCCTGAGGTCTCTGATGGAGATCGATTTTGATTCGATTACCCAGAGCCAAGTGAAAAACATCAAAGGTGAG i rheMac8.chr11 I 8 C 0 s macFas5.chr11 128254225 192 + 137757926 GCCAGGTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGTGAATGCATCCTCATCATGAAGGGGTACAAAGAGCTCAACTGGAAAACCGCCAAGGGCATGATGTCCGACCCGAATTTCCTGAGGTCTCTGATGGAGATCGATTTTGATTCGATTACCCAGAGCCAAGTGAAAAACATCAAAGGTGAG i macFas5.chr11 I 8 C 0 s macNem1.NW_012010578v1 10652868 192 - 16319837 GCCAGGTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGTGAATGCATCCTCATCATGAAGGGGTACAAAGAGCTCAACTGGAAAACCGCCAAGGGCATGATGTCCGACCCGAATTTCCTGAGGTCTCTGATGGAGATCGATTTTGATTCGATTACCCAGAGCCAAGTGAAAAACATCAAAGGTGAG i macNem1.NW_012010578v1 I 8 C 0 s cerAty1.NW_012001186v1 12276514 192 + 20526591 GCCAGGTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGTGAATGCATCCTCATCATGAAGGGGTACAAAGAGCTCAACTGGAAAACCGCCAAGGGCATGATGTCCGACCCGAATTTCCTGAGGTCTCTGATGGAGATCGATTTTGATTCGATTACCCAGAGCCAAGTGAAAAACATCAAAGGTGAG i cerAty1.NW_012001186v1 I 8 C 0 s chlSab2.chr11 119248402 192 + 128539186 GCCAGGTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGTGAATGCATCCTCATCATGAAGGGGTACAAAGAACTCAACTGGAAAACCGCCAAGGGCATGATGTCTGACCCGAATTTCCTGAGGTCTCTGATGGAGATCGATTTTGATTCGATTACCCAGAGCCAAGTGAAAAACATCAAAGGTGAG i chlSab2.chr11 I 8 C 0 s manLeu1.NW_012103587v1 590383 192 + 6255621 GCCAGGTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGTGAATGCATCCTCATCATGAAGGGGTACAAAGAGCTCAACTGGAAAACCGCCAAGGGCATGATGTCCGACCCGAATTTCCTGAGGTCTCTGATGGAGATCGATTTTGATTCGATTACCCAGAGCCAAGTGAAAAACATCAAAGGTGAG i manLeu1.NW_012103587v1 I 8 C 0 s colAng1.NW_012116043v1 4625692 192 - 8658521 GCCAGGTCATTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGTGAATGCATCCTCATCATGAAGGGGTACAAAGAGCTCAACTGGAAAACCGCCAAGGGCATGATGTCCGACCCGAATTTCCTGAGGTCTCTGATGGAGATCGATTTTGATTCGATTACCCAGAGCCAAGTGAAAAACATCAAAGGTGAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114826960 192 + 124281992 GCCAGGTCATTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGCGAATGCATCCTCATCATGAAGGGATTCAAAGAGCTCAACTGGAAAACCGCCAAGGGCATGATGTCCGACCCGAATTTCCTGAGGTCGCTGATGGAGATCAATTTTGATTCGATTACACAGAGCCAAGTGAAAAACATCAAAGGTGAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 471524 192 - 9212255 GCCAGGTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGCGAATGCATCCTCATCATGAAAGGCTACAAAGAGCTCAACTGGAAAACCGCCAAGGGCATGATGTCTGACCCGAATTTCCTGAGGTCTCTGATGGAGATTGATTTTGATTCGATTACACAGAGCCAAGTGAAAAACATCAAAGGTGAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2890568 192 + 4466143 GCCAGGTCATTTGCTAAGCCTCCGAAGCAGGTGCAGACGGTCTGCGAATGCATCCTCATCATGAAAGGGTACAAAGAGCTCAACTGGAAAACCGCCAAGGGCATGATGTCTGACCCGAATTTCCTGAGGTCTCTGATGGAGATTGATTTTGATTCGATCACACAGAGCCAAGTGAAAAACATCAAAGGTGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1592628 192 + 5364348 GCCAGGTCATTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGCGAATGCATCCTCATCATGAAAGGGTACAAAGAGCTCAACTGGAAAACCGCCAAGGGCATGATGTCTGACCCGAATTTCCTGAGATCTCTGATGGAGATCGATTTTGATTCGATTACGCAGAGCCAAGTGAAAAACATCAAAGGTGAG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9476905 192 - 31815103 GCCAGGTCGTTCGCCAAGCCCCCGAAGCAGGTGCAGACGGTCTGCGAGTGCATCCTCATCATGAAAGGGTACAAAGAGCTCAACTGGAAAACCGCCAAGGGCATGATGTCCGACCCAAATTTCCTGCGGTCTCTGATGGAGATCGATTTCGACTCCATCTCCCAGGGCCAGGTGAAGAATATCAAAGGTGAG i micMur3.chr21 I 1197 I 1050 s proCoq1.NW_012154285v1 6729732 192 - 9870158 GCCAGGTCGTTCGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGCGAGTGCATCCTCATCATGAAAGGGCACAGAGAGCTCAACTGGAAAACCGCCAAAGGCGTGATGTCTGACCCGAATTTCCTGAGGTCTCTGATGGAGATCGATTTCGATTCAATTTCCCACAGCCAGGTTAAGAATATCAAAGGTGAG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4315329 192 + 7922563 GCCAGGTCATTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGCGAGTGCATCCTCATCATAAAAGGGTACAAAGAGCTCAACTGGAAAACTGCCAAAGGCATGATGTCTGACCCAAATTTCCTAAGGTCTCTGATGGAGATTGATTTTGATTCAATTTCTCAGAGCCAGGTTAAAAATATCAAAGGTGAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124814545 191 + 151834684 -CCAGGTCATTCGCGAAGCCCCCGAAGCAAGTGCAGACAGTCTGTGAGTGCATCCTCATCATGAAAGGCTACAAGGAGCTTAACTGGAAAACTGCCAAGGGCATGATGTCCGACCCCAACTTCTTGAGGTCCCTGATGGAAATCGACTTCGATTCCATCACCCAGGGTCAAGTGAAGAACATCAAAGGTAAG i mm10.chr5 C 0 C 0 s canFam3.chr26 33169108 192 - 38964690 ACCAGGTCCTTTGCTAAGCCCCCCAAACAGGTGCAGACCGTGTGTGAGTGCATCCTCATCATGAAAGGGTACAAAGAGCTCAACTGGAAGACTGCCAAGGGCATGATGTCTGACCCGAATTTCCTGAGATCGCTGATGGAGATTGATTTTGATTCAATCACCCAGAGCCAAGTGAAAAATATCAGAGGTGCA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 851280 192 - 1116856 ACCAGGTCCTTTGCTAAGCCCCCTAAGCAGGTGCAGACAGTCTGTGAATGCATCCTCATCATGAAAGGGTACAAAGAACTCAATTGGAAAACTGCCAAAGGCATGATGTCTGACCCAAATTTCCTGAGGTCCCTGATGGAGATGGATTTTGATTCAATTTCCCAGAGCCAAGTTAAAAATATAAGAGGTGAG i dasNov3.JH568189 C 0 C 0 a score=1225096.000000 s hg38.chr12_KI270834v1_alt 82939 104 + 119498 TGTAGCCACGTGTGGGAATCGCCAGGGTGGATCTCGGTCTGGCATCTCAGGCTCTGGGA-CAGGGATGGAGGGCAAGGA---GG----CTTGTCGTGGGCAGGCCCTCCCCT s panTro5.chr12 127368897 104 + 137163284 TGTAGCCATGTGTGGGAATCGCCAGGGTGGATCTCGGTCTGGCATCTCAGGCTCTGGGA-CAGGGATGGAGGGCAAGGA---GG----CTTGTCGTGGGCAGGCCCTCCCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125719998 104 + 135337776 TGTAGCCATGTGTGGGAATCGCCAGGGTGGATCTCGGTCTGGCATCTCAGGCTCTGGGA-CAGGGATGGAGGGCAAGGA---GG----CTTGTCGTGGGCAGGCCCTCCCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8233364 104 - 8369578 TGTAGCCACGTGTGGGAATCGCCAGGGTGGATCTCAGTCTGGCATCTCAGGCTCTGGGA-CAGGGATGGAGGGCAAGGA---GG----CTTGTCGTGGGCAGGCCCTCCCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97891631 100 + 106955855 TGTAGCCACGTGTGGGAATCGCCAGGG----TCTCGATCTGGCATCTCAGGCTCTGGGA-CAGGGATGGAGGGCAAGGA---GG----CTTGTTGCAGGCAGGCCCTCCCCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124006316 104 + 133663169 TGTCGCCACGTATGGGAATCGCCAGGGTGGATCTCGGTCTGGCATCTCAGGCTCTGGGA-CAGGGATGGAGGGCAAGGA---GG----CTTGTTATGGGCAGGCCCTCCCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128254417 104 + 137757926 TGTCGCCACGTATGGGAATCGCCAGGGTGGATCTCGGTCTGGCATCTCAGGCTCTGGGA-CAGGGATGGCGGGCAAGGA---GG----CTTGTTATGGGCAGGCCCTCCCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10653060 104 - 16319837 TGTCGCCACGTATGGGAATCGCCAGGGTGGATCTCGGTCTGGCATCTCAGGCTCTGGGA-CAGGGATGGAGGGCAAGGA---GG----CTTGTTATGGGCAGGCCCTCCCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12276706 104 + 20526591 TGTCGCCACGTATGGGAATCGCCAGGGTGGATCTCAGTCTGGCATCTCAGGCTCTGGGA-CAGGGATGGAGGGCAAGGA---GG----CTTGTTGTGGGCAGGCCCTCCCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119248594 104 + 128539186 TGTCGCCTCGTATGGGAATCGCCAGGGTGGATCTCTGTCTGGCATCTCAGGCTCTGGGA-CAGGGATGCAGGGCAAGGA---GG----CTTGTTGTGGGCAGGCCCTCCCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 590575 104 + 6255621 TGTCGCCACGTGTGGGAATCGCCAGGGTGGATCTCGGCCTGGCATCTCAGGCTCTGGGA-CAGGGGTGGAGGGCAAGGA---GG----CTTGTTGTGGGCAGGCCCTCCCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4625884 103 - 8658521 TGTTGCCACATATGGGAATCGCCAGGGTGGATCTCGGTCTGGCATCTCAGGCTCT-GGA-CAGGGATGGAGGGCAAGGA---GG----CTTGTTGTGGGCAGGCCCTCCCCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114827152 103 + 124281992 TATAGCCGTGGGTGGGAATCACCAGGGTGGATCTTGGTCTGGCATCTCAGTCTCTGGGA-CAGGGAAAGAAGGCAAGGA---GG----CTTGTTGCAGG-AGGCCCTCCCCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 471716 100 - 9212255 TATAGCCGT--GTGGGAATCGCCAGGGTGGATCTGGGTCTGGCATCTCAGTCTCTGGGA-CAGGGAAAGAAGGCAAGGA---GG----TTTGTCACAGG-A-GCCCTCCCCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2890760 103 + 4466143 TGTAGCCGTGTGTGGGAATCACCAGGGTGGATCTCGGTCTGGCATCTCAGTCTCTGGGA-CAGGGAAAGAAGGCAAGGA---GG----CTTGTCACAGG-AGGCCCTCCCCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1592820 102 + 5364348 TATAGCCGTGTGTGGGAATCACCAGGGTGGATCTCGGTCTGGCATCTCAGTCTCTGGGA-CAGGGAAAGAA-GCAAGGA---GG----CTTGTCGCAGG-AGGCCCTCCCCT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6729924 107 - 9870158 TGTGCTCAAATGCGGGAACAGCCAGGGTTGACCTCGATTTGGCGTCTTGGTCTCTGGGA-CGGGGATGGAGGGCAAGGA---GGG-GACTTGTCACAGGCAGGCCCTCCCCT i proCoq1.NW_012154285v1 C 0 I 900 s otoGar3.GL873618 4315521 103 + 7922563 TTTGGTCGAATATGTGAATAGCCAGAGTTGATCTTGATTTGGCGTCTTGG--TCTGGGA-CAGGGATGGAGGGCAAGGA---AGA-GACTTATGGCAGGCAGGCCCTCCC-- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124814736 42 + 151834684 ------------------------------------------------------------------TGGGGGGCTGGGA---GGG-TCCAGGTGAGGGGTGGGGTGTCACCT i mm10.chr5 C 0 I 6 s canFam3.chr26 33169300 103 - 38964690 TACGGACAGACACAGGGATAGCCAGGGTTGATCTT------GCAGCTCAGGCTTTGGGAGCAGGGATGGAGAGGACAGA---GGGATACTAGTCCCAGGCTAGCCCTCCTGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 851472 99 - 1116856 --------TGTAGATGAATAGCCAGTGTTGATCCCAGTTTGGCACCTCAGTCTTTGAGA-CAGGGATGGAGAGCAAGGAATGGG----CTTTTCACCTGCAGGTCTCTCTGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9477097 1050 - 31815103 I a score=3393235.000000 s hg38.chr12_KI270834v1_alt 83043 342 + 119498 TCTG----------GTCAGATGGTAT----------------------CGGATGGAACAGGC----AACTGATGGTCACCAGAGGAAAACAGCAGCCCCATGACGTGACCCAGGGAGAGTGGCTG-GGGATGCGCGGCGGCAGCCG-TGCCC-ACTGAGGGTTCGATTCGGCACTAGTCCTAGCTCTCCGTGTCAG-GAAACAGGATCTTCTCATTGGAACCTAGCCCAGCCT-TGTCTTCTGTGCATCTCACCCA--------------GTGCTGTTCAGTGCACATGCAGAAGCCCAGAGCTAGTCTGACCTTGACTTCCCCCCTTTCTCCTCTTGTCAGTGTCAAGTCTTCTGGAGGTCCCTGGGGAGT--GGGCA--TGGGGGTGGGCAGCATCACT s panTro5.chr12 127369001 342 + 137163284 TCTG----------GTCAGATGGTAT----------------------GGGATGGAACAGGC----AACTGATGGTCACCAGAGGAAAACAGCAGCCCCATGACGTGACCCAGGGAGAGTGGCTG-GGGATGCGTGGCGGCAGCCG-TGCCC-ACTGAGGGTTCGATTCAGCACTAGTCCTAGCTCTCCCTGTCAG-GAAATAGGATCTTCTCATTGGAACCTAGCCCAGCCT-TGTCTTCTGTGCATCTCACCCA--------------GTGCTGTTCAGTGCACACGCAGAAGCCCAGAGCTGGTCTGACCTTGACTTCCCCCCTTTCTCCTCTTGTCAGTGTCAAGTCTTCTGGAGGTCCCTGGGGAGT--GGGCA--TGGGGGTGGGCAGCATCACT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125720102 342 + 135337776 TCTG----------GTCAGATGGTAT----------------------GGGATGGAACAGGC----AACTGATGGTCACCAGAGGAAAACAGCAGCCCCATGACGTGACCCAGGGAGAGTGGCTG-GGGATGCGTGGCGGCAGCCG-TGCCC-ACTGAGGGTTCGATTCAGCACTAGTCCTAGCTCTCCCTGTCAG-GAAATAGGATCTTCTCATTGGAACCTAGCCCAGCCT-TGTCTTCTGTGCATCTCACCCA--------------GTGCTGTTCAGTGCACACGCAGAAGCCCAGAGCTGGTCTGACCTTGACTTCCCCCCTTTCTCCTCTTGTCAGTGTCAAGTCTTCTGGAGGTCCCTGGGGAGT--GGGCA--TGGGGGTGGGCAGCATCACT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8233468 346 - 8369578 TCTG----------GTCAGATGGTAT----------------------CGGATGGAACAGGCAACTAACTGATGGTCACCAGAGGAAAACAGCAGCCCCATGACGTGACCCAGGGAGAGTGGCTG-GGGATGCGCGGCGGCAGCCG-TGCCC-ACTGAGGGTTCAATTCAGCACTAGTCCTAGCTCTCCCTGTCAG-GAAACAGGATCTTCTCATTGGAACCTAGCCCAGCCT-TGTCTTCTGTGCATCTCACCCA--------------GTGCTGTTCAGTGCACAAGCAGAAGCCCAGAGCTAGTCTGACCTTGACTTCCCCCCTTTCTCCTCTTGTCAGTGTCAAGTCTTCTGGAGGTCCCTGGGGAGT--GGGCA--TGGGGGTGGGCAGCATCACT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97891731 356 + 106955855 TCTG----------GTCAGATGGTAT----------------------CAGATGGAACAGGC----AACTGATGGTCACCAGAGGAAAACAGCAGCCCCATGACGTGACCCAGGGAGAGTGGTTG-GGGATGCGCGGCGGCAGCCG-TGCCC-ACTGAGGGTTTGATTCAGCACTAGTCCTAGCTCTCCCTGTCAG-GAAACAGGATCTTCTCATTGGAACCTAGCCCAGCCT-TGTCTTCTGTGCGTCTCACCCAGTGTTGTTCTGTCTGTGCTGTTCAGTGCACATGCAGAAGCTCAGAGCTGGTCTGACCTTGACTTCCCCCCTTTCTCCTCTTGTCAGTATCGAGTCTTCTGGAGGTCCCTGGGGAGT--GGGCA--CGGGGGTGGGCAGCATCACT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124006420 353 + 133663169 TCTG----------GTCAGATGGTAT----------------------CAGATGGAGCAGGC----AACTGATGGTCACCAGAGGAAAACAGCAGCCCTGTGACATGACCCTGGGAGAGTGGCTG-GGGATGGGCGGTGGCAGCCG-TGCCC-ACTGAGGCTTCCATTCAGCACTAGTCCTAGCTCTCCCTGTCAG-GAAACAAGATCTTCTCATTGGAACCTAGCCCAGCCT-TGTCTTCTGTGCATCTCACCCAgtgctgttctgtctgtgctgttcagtgcACATGCAGAAGCCCAGAGCTGGTCCGACCTTGACTTCCCGCCTTTC---TCTTGTCAGTATCAAGTCTTCTGGAGGTCCCTGGGGAGT--GGGCA--CGGGGGTGGCCAGCATCACT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128254521 338 + 137757926 TCTG----------GTCAGATGGTAT----------------------CAGATGGAGCAGGC----AACTGATGGTCACCAGAGGAAAACAGCAGCCCTGTGACATGACCCTGGGAGAGTGGCTG-GGGATGGGCGGTGGCAGCCG-TGCCC-ACTGAGGCTTCCATTCAGCACTAGTCCTAGCTCTCCCTGTCAG-GAAACAAGATCTTCTCATTGGAACCTAGCCCAGCCT-TGTCTTCTGTGCATCTCACCCAgtgctgttctgtctgtgctgttcagt---------------cggagctgGTCCGACCTTGACTTCCCGCCTTTC---TCTTGTCAGTATCAAGTCTTCTGGAGGTCCCTGGGGAGT--GGGCA--CAGGGGTGGCCAGCATCACT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10653164 353 - 16319837 TCTG----------GTCAGATGGTAT----------------------CAGATGGAGCAGGC----AACTGATGGTCACCAGAGGAAAACAGCAGCCCTGTGACATGACCCTGGGAGAGTGGCTG-GGGATGGGCGGTGGCAGCCG-TGCCC-ACTGAGGCTTCCATTCAGCACTAGTCCTAGCTCTCCCTGTCAG-GAAACAAGATCTTCTCATTGGAACCTAGCCCAGCCT-TGTCTTCTGTGCGTCTCACCCAGTGCTGTTCTGTCTGTGCTGTTCAGTGCACATGCAGAAGCCCGGAGCTGGTCCGACCTTGACTTCCCGCCTTTC---TCTTGTCAGTATCAAGTCTTCTGGAGGTCCCTCGGGAGT--GGGCA--CGGGGGTGGCCAGCATCACT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12276810 353 + 20526591 TCTG----------GTCAGATGGTAT----------------------CAGATGGAACAGGC----AACTGATGGTCACCAGAGGAAAACAGCAGCCCTGTGACATGACCCTGGGAGAGTGGCTG-GGGATGGGTGGTGGCAGCCG-TGCCC-ACTGAGGCTTCCATTCAGCACTAGTCCTAGCTCTCCCTGTCAG-GAAACAAGATCTTCTCATTGGAACCTAGCCCAGCCT-TGTGTTCTGTGCGTCTCACCCAgtgctgttctgtctgtgctgttcagtgcACATGCGGAAGCCCGGAGCTGGTCCGACCTTGATTTCCCGCCTTTC---TCTTGTTAGTATCAAGCCTTCTGGAGGTCCCTGGGGAGT--GGGCA--CGGGGGTGGCCAGCATCACT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119248698 354 + 128539186 TCTG----------GTCAGATGGTAT----------------------CAGATGGAACAGGC----AACTGATGGTCACCAGAGGAAAACAGCAGCCCTGTGACGTGACCCTGGGAGAGTGGCTG-GGGATGGGCGGTGGCAGCCG-TGCCCAACTGAGGCTTCCATTCAGCACTAGTCCTAGCTCTCCCTGTCAG-GAAACAAGATCTTCTCATTGGAACCTAGCCCAGCCT-TGTCTTCTGTGTGTCTCACCCAGTGCTCTTCTGTCTGTGCTGTTCAGTGCACATGCAGAAGCCCAGAGCTGGTCTGACCTTGACTTCCCGCCTTTC---TCTTGTCAGTATCAAGTCTTCTGGAGGTCCCTGGGGAGT--CGGCA--CGGGGGTGGCCAGCATCACT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 590679 351 + 6255621 TCTG----------GTCAGATGGTAT----------------------CAGATGGAACCGGC----AACTGATGGTCACCAGAGGAAAACAGCAGCCCTGTGACATGACCCTGGGAGAGTGGCTG-GGGATGGGCGGTGGCAGCCG-TGCCC-ACTGAGGCTTCCATTCAGCACTAGTCCTAGCTCTCCCTGTCAG-GAAACAAGATCTTCTCACTGGAACCTAGCCCAGCCT-TGTCTTCTGTGCGTCTCACCCAgtgctgttctgtctgtgctgttcagtgcACATGCAGAAGCCCGGAGCTGGTCCGACCTTGATTTCCCGCCTTTC---TCTTGTCAGTATC--GTCTTCTGGAGGTCCCTGGGGAGT--GGGCA--CGGGGGTGACCAGCATCACT i manLeu1.NW_012103587v1 C 0 I 135 s colAng1.NW_012116043v1 4625987 356 - 8658521 TCTG----------GCCGGATGGTAT----------------------CAGATGGAACAGGC----AACTGATGGTCACCAGAGGAAAGCAGCAGCCTCGTGACGTGACCCTGGGAGAGTGACTG-GGGATGGGCGATGGCAGCCG-TGCCC-ACTGAGGCTTCCATTCAGCACTAGTCCTAGCTCTCCCTGTCAG-GAAACAAGATCTTCTCATTGGAACCTAGCTCAGCCT-TGTCTTCTGTGCGTCTCACCCAGTGCTGTTCTGTCTGTGCTGTTCAGTGCACATGCAGAAGCCCAGAGCTGGTCCGACCTTGACTTCCTGCCTTTCTCTTCTTGTCAGTATCAAGTCTTCTGGAGGTCCCTGGGGAGT--GGGCA--CGGGGGTGGCCAGCATCACT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114827255 328 + 124281992 TGCA----------GTCAGATGGTAT----------------------CAGATGGAACAGGC----GACTATTGGTCACC--AGGAGAACAGCAGCCTCGTGACGTGATCCAGGGAGTGTGGCTG-GGGGCGAGCAGCAGCAGCCA-AGCCC-GCCTTG--CTCGGTTCAGCACTAGTCCCAGTTCTCCCTGTCAG-GAAACAAGATCATCTCGTTGGAACCGAGCCCGGCCT-TGTCTTCTGCGCGTCTCATCCA------------------------GTGCGTGTGCAGGAGCCCAGAGCCGCTCTGACCTTGGCTTCCCTGCTTTCTCCTCTTGTCAGTATAAATTTTTCTGGAGGTCCCTGGGGAAT--TGGCA--TGGTGGGGGGCAGCATCACT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 471816 331 - 9212255 TGCAGTCAGATGGTGTCAGATGGTAT----------------------CAGATGGAACAGGC----GACTATTGGTCACC--AGGAAAACAGCAGCCCCATGACGCCACCCAGGGAGTGTGGCTG-GGGATGGGCA-------CCA-AGCCC-ACCTTG--TTCTGTTCAGCGCTAGTCCTAGTTCTCCCTGTCGG-GAAACAAGATCATCTCGCTGGAACCGAGCCCGGCCT-TGTCTTCTGCGCGTCTCATCCA------------------------GTGCGTGTGCAGGAGCCCAGAGCTGCTCTGACCTTGGCTTCCCGGCTTTCTCCTCTTGTCAGTATCGAGTCTTCTGGAGGTCCCTGGGGAGT--GGGCA--TGGAGGGGGGTGGCATCACT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2890863 328 + 4466143 TGCA----------GTCAGATGGTAT----------------------CAGATGGAACAGGC----GACTATTGGTCACC--AGGAAAACAGCAGCCCCATGGCGTGACCCAGGGAGCGTGGCTG-GGGATGGGCAGCGGCAGCCA-AGCCC-ACCTTG--TTCAGTTCAGCACTAGTCCTAGCTCTCCCTGTCGG-GAAACAAGATCATCTCGTTGGAACTGAGCCCGGCCT-TGTCTTCTGCGCGTCTCATCCA------------------------GTGCGCGTGCAGGAGCCCAGAGCTGCTCTGACCTTGGCTTCCCTGCTTTCTCTTCTTGTCAGTATCAAGTCTTCTGGAGGTCCCTGGGGAGT--GGGCA--TGGTGGGGGGCAGCATCACT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1592922 327 + 5364348 TGCA----------GTCAGATGGTAT----------------------CAGATGGAACAGGC----GACTCTTGGTCACC--AGGAAAACAGCAGCCCCATGACGTGACCCAGGGAGTGTGGCTG-GGGATGGGCAGCGGCAGCCA-AGCCC-A-CTTG--TTCAGTTCAGCACTGGTCCTAGTTCTCCCTGTCAG-GAAACAAGATCATCTCGTTGGAACCGAGCCCGGCCT-TGTGTTCTGCGCGTCTCATCCA------------------------GTGCGCGTGCAGCAGCCCCCAGCTGCTCTGACCTTGGCTTCCCCGCTTTCTCCTCTTGTCAGTATCAAGTCTTCTGGAGGTCCCTGGGGAGT--GGGCA--TGGTGGGGGGCAGCATCACC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4315624 276 + 7922563 TGTG----------GTCAGATGGTACCACTGAG---------GCCCTGCAGATAGAACTGGA----GACTA----TCTCCAGAGGA-----------------------------AGAATGGCTG-GGGGCAGGAGGTAGGGCTGA-TACTT-ACTGTATGCCTGGTTCA-CACTAGCTTTAGTTCTCTA-GTCAG-CAAACAAGATCTTCTCATTG-------------------------------------------------------------CAATGCACACAATGGTGCCAAGAGGTGGTCTAACCTTGACTTCTCCCCTTGCTGCTCTTGTCAGTATAAAGTCTTCTATAGATCTGTGGGGCCTCAGGGAG--AGAGGACTGACTGCATGGCC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124814784 246 + 151834684 ----------------------------------------------TGTACGTGGAGCAGGA----CAATGGCTGTC---------------CAGCTCCCACTGATGATGCAGGGACAGAGGCAG-CCACCAATTGGC-----CCA-TACAC-A-----------GCTCAGCAGAGGGTCTGGCTCTCAGTGGCAGAGAAACAAGA---ATTGATGGGAACCCGGCTCTGCCTCTGCCCTCTGTGTGGCTCAGC--------------------------------------------------------------ACTTTCC-CTTTGTGCCTCTTGCCAATGTTACGCCTCCATAGGAACCTGGGGGACC--TAGCA---GGGGGAGGGCCGTGCCATC i mm10.chr5 I 6 C 0 s canFam3.chr26 33169403 337 - 38964690 TGTG----------GTCAGTTGTCAC---TGTG---------GCCCTACAGATGGGATAGCC---CAAATAATCATTCCAAAAGGCAGATGGAAGGC-TGTTGTGTGAAATGGAAAGGCTGGATGCTAGATGGGCCATAGCAGCTGATGCCC-TCTGAACATTCAA--CAGCAATCACTCTGGTGTTTCCCATTAG-GAAACAGGACCTTCCTAT--GGACCCAGGCTGGCCT-TGTCTTCCGTCCGTCTTGTCCA------------------------TTAAGCATGGGGGTGC-AAGAGGCGCTCTAACCCTGACTTCTCCTCTTGCATCTCTTGCCAGTATAAAGTCTTCTATAGGTCTCTGGGAAAT--GGGTG--AGGAGG-GGCTGGCACCAC- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 851571 346 - 1116856 TGTG----------GTCAGATGGTATCTCTGTGGCCACCGCAGCCCTTGAACTGTGATAGGG----AGAGGAGCAACCCCAAAGAAAAATGATGGTACTGTGACCTGAATCAGGAGAGATGGATG-TGGATGGGCAGCAGTGGCAGATGGCC-ACTGAATATTTGATTCAGCAATAGCTCTAGTTCTTACTGTCAG-GAACCAGGACCTTCTTATTGGAACCCAACCCTGCCT-TGTCTTCTA-----------------------------------CAGTGGGTGTGGTAGTGCCAAGGATTGGTCTAGCCTGCCCTTCTCCCCTTGTTCCTCTTGCTAGTATAAAGCCTCCTGTAGGTCCCTGGGGAAA--GGACAAGTGGGAGGGGATGGCGACCCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9477097 1050 - 31815103 I e proCoq1.NW_012154285v1 6730031 900 - 9870158 I a score=134937.000000 s hg38.chr12_KI270834v1_alt 83385 10 + 119498 GATGGCCAGC s panTro5.chr12 127369343 10 + 137163284 GATGGCCAGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125720444 10 + 135337776 GATGGCCAGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8233814 10 - 8369578 GATGGCCAGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97892087 10 + 106955855 GATGGCCAGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124006773 10 + 133663169 GATGGCCAGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128254859 10 + 137757926 GATGGCCAGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10653517 10 - 16319837 GATGGCCAGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12277163 10 + 20526591 GATGGCCAGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119249052 10 + 128539186 GATGGCCAGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 591165 10 + 6255621 GATGGCCAGC i manLeu1.NW_012103587v1 I 135 C 0 s colAng1.NW_012116043v1 4626343 10 - 8658521 GATGGCCAGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114827583 10 + 124281992 GATGGCCAGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 472147 10 - 9212255 GATGGCCAGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2891191 10 + 4466143 GACGGCCAGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1593249 10 + 5364348 GATGGCCAGC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4315900 9 + 7922563 -CACGCCAGC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124815030 10 + 151834684 TGCGGTCAGC i mm10.chr5 C 0 I 927 s canFam3.chr26 33169740 7 - 38964690 ---AGCCAAC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 851917 10 - 1116856 CAGGGTTAGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9477097 1050 - 31815103 I e proCoq1.NW_012154285v1 6730031 900 - 9870158 I a score=5896248.000000 s hg38.chr12_KI270834v1_alt 83395 581 + 119498 CTCTCCTCCATCTTTGGTTATAGGA---CT--GAGTTCCCCTTGAGCTCAGTTCCTGACCCTGCCCAGTGCTCAGCCAGGCGGTGATAGTGTAATGGTGTTAGTCTTTGCGAAA--AGCAATACAAGTTA------ACGCT-GTGT---T--------TGATGGTTTATTTAG-ACTCTT---ATCA--AATGCTTTTTCTTAGCCCCTTAAAAACAAAAGCAATCTCAACACAAATGACCCCAACCACTACAAAAACCCAAGGCACTCCCTCTGTCTGAATCTTCATTGGATGGACTTCCGTTTATGTGAAATTACTCCTGGGGTGAGGGTGCGGGTGAAGG-TAA--CAGGTGACCTGTAGTGGCCTGTGAATTCCAGTT--------------AGCCACCTGGGTGCCCAGTTGG----------------GAGTCTCCGT-TACGCCCTGG-GTCTCCTGTGTGACACCTG----------CGTCCTGGGTGGCAGTAAACCATGTCCCTTGCCCACATCTGAAACATCCGTTTATGCAGAACCCATCTT-GGTTTGACACCACGCTGTTGGCCGTAGGAGAGCTTTGTGCATTCTGCTCACAGGGCCACTGAAGAATAAGAAACTAGTTATGCTTATTTTGTC------------------TATTTTATGC s panTro5.chr12 127369353 581 + 137163284 CTCTCCTCCATCTTTGGTTATAGGA---CT--GAGTTCCCTTTGAGCTCAGTTCCTGACCCTGCCCAGTGCTCAGCCAGGCGGTGATAGTGGAATGGTGTTAGTCTTTGCGAAA--AGCAATACAAGTTA------ACGCT-GTGT---T--------TGATGGTTTATTTAG-ACTCTT---ATCA--AATGCTTTTTCTTAGCCCCTTAAAAACAAAAGCAATCTCAACACAGATGACCCCAACCACTACAAAAACCCAAGGCACTCCCTCTGTCTGAATCTTCATTGGATGGACTTCCGTTTATGTGAAATTACTCCTGGGGTGAGGGTGCGGGTGAAGG-TAA--CAGGTGACCTGTAATGGCCTGTGAATTCCAGTT--------------AGCCACCTGGGTGCCCAGTTGG----------------GAGTCTCCGT-CACGCCCTGG-GTCTCCTGCGTGACACCTG----------CGTCCTGGGTGGCAGTAAACCATGTCCCTTGCCCACATCTGAAACATCCGTTTATGCAGAACCCATCTT-GGTTTGACACCACGCTGTTGGCCATAGGAGAGCTGTGTGCCTTCTGCTCACAGGGCCACTGAAGAATAAGAAACTAGTTACGCTTATTTTGTC------------------TATTTTATGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125720454 582 + 135337776 CTCTCCTCCATCTTTGGTTATAGGA---CT--GAGTTCCCTTTGAGCTCAGTTCCTGACCCTGCCCAGTGCTCAGCCAGGCGGTGATAGTGGAATGGTGTTAGTCTTTGCGAAA--AGCAATACAAGTTA------ACGCT-GTGT---T--------TGATGGTTTATTTAG-ACTCTT---ATCA--AATGCTTTTTCTTAGCCCCTTAAAAACAAAAGCAATCTCAACACAAATGACCCCAACCACTACAAAAACCCAAGGCACTCCCTCTGTCTGAATCTTCATTGGATGGACTTCCGTTTATGTGAAATTACTCCTGGGGTGAGGGTGCGGGTGAAGGTTAA--CAGGTGACCTGTAATGGCCTGTGAATTCCAGTT--------------AGCCACCTGGGTGCCCAGCTGG----------------GAGTCTCCGT-CACGCCCTGG-GTCTCCTGCGTGACACCTG----------CGTCCTGGGTGGCAGTAAACCATGTCCCTTGCCCACATCTGAAACATCCGTTTATGCAGAACCCATCTT-GGTTTGACACCACGCTGTTGGCCATAGGAGAGCTGTGTGCATTCTGCTCACAGGGCCACTGAAGAATAAGAAACTAGTTACGCTTATTTTGTC------------------TATTTTATGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8233824 562 - 8369578 CTCTCCTCCATCTTTGGTTATAGGA---CT--GAGTTCCCTTTGAGCTCAGTTCCTGACCCTGCCCAGTGCTCAGCCAGGCGGTGATAGTGGAATAGTGTTAGTCTTTGCGAAA--AGCAATACAAGTTA------ACGCT-GTGT---T--------TGAT-GTTTATTTAG-ACTCTT---ATCA--AATGCTTTTTCTTAGCCCCTTAAAAACAAAAGCAATCTCAACACAAATGACCCCAACCACTACAAAAACCCAAGGCACTCCCTGTGTCTGAATCTTCATTGGATGGACTTCCGTTTATGTGAAATTACTCCTGGGGTGAGGGTGCGGGTGAAGG-TAA--CAGGTGACCTGTAATGGCCTGTGAATTCCAGTT--------------AGCCACCTGGGTGCCCAGCTGG----------------GAGTCTCCAT-TACGCCCTGG-GTCTCCTGCTTGACACCTG----------CGTCCTGGGTGGCAGTAAACCATGTCCCTTGCCCACATCTGAAACATCCGTTTATGCAGAACCCATCTT-GGTTTGACACCACGCTGTTG------------------GCATTCTGCTCACAGGGCCACTGAAGAATAAGAAACTAGTTACGCTTATTTTGTC------------------TATTTTATGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97892097 580 + 106955855 CTCTCCTCCATCTTTGGTTATAGGA---CT--GAGTTCCCTTTGAGCTCAGTTCCTGACCCTGCCCAGTGCTCAGCCAGGCAGTGATAGTGGAATGGTGTTAGTCTTTGTGAAA--AGCAATACAAGTTA------ATGC--ATGT---T--------TGATGGTTTATTTAG-ACTCTT---ATCA--AATGCTTTTTCTTAGCCCCTTAAAAACAAAAGCAATCTCAACACAAATGACCCCAACCACTACAAAAACCCAAGGCACTCCCTCTATCTGAATCTTCATTGGATGGACTTCCGTTTATGTGAAATTACTCCTGGAGTGAGGGTGCGGGTGAAGG-TAA--CAGGTGACCTGTAATGGCCTGTGATTTCCAGTT--------------AGCCACCTGAGTGCCCAGTTGG----------------GAGTCTCCGT-TACGCCCTGG-GTCTCCTGCATGACACCTG----------CATCACGGGGGGCAGTAAACCATGCCCCTCACCCACATCTGAAACATCCATTTATGCAGAACCCATCCT-GGTTTGACACCACGCTGTTGGCCGTAGGAGAGCTGTGTGCATTCTGCTCACAGGGCCACTGAAGAATAAGAAACTAGTTACGCTTATTTTGTC------------------TATTTTGTGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124006783 581 + 133663169 CTCTCCTCCATCTTTGGTTATAGGA---CT--GAGTTCCCTTTGAGCTCAGTTCTTGACCCTGCCCAATGCTCAACCAGGCGGTGATAGTGGAATGGTGTTAGTCTTTGCGAAA--TGCAATACGAGTTC------ACACT-GTGT---T--------TGATGGTTTATTTAG-ACTCTT---ATCA--AATGCTTTTTCTTAGCCCCTTAAAAACAAAAGCAAACTCAACACAAATGACCCCAATCACTACAAAAACCCAACGCACTCCCTCTATCTGAATCTTCACTGGATAGACTTCCGTGTATGTGAAATTACTCCTGGGGTGAGGGTGCGGGTGAAGG-TAA--CAGGTGACCTGTAATGGCCTGTGAATTCCAGTT--------------AGCCACGTGGGTGCCCAGTTGG----------------GAGTCTCCGT-TTTGCCCCGG-GTCTCCTGCATGACACCCG----------CGTCCTGGGTAGCAGTAAACCATGCCCCTCGCCCACATCGGAAACATTGGTTTATGCAGAACCCATTCT-GGTTTGACACCACGCTGTTGGCCGTAGGAGAGCTGTGTGCATCCTGCTCACGCGGCCGCTGAAGAATAAGAAACTAGTTACACTTATTTTGTC------------------TATTTTATGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128254869 581 + 137757926 CTCTCCTCCATCTTTGGTTATAGGA---CT--GAGTTCCCTTTGAGCTCAGTTCTTGACCCTGCCCAATGCTCAACCAGGCGGTGATAGTGGAATGGTGTTAGTCTTTGCGAAA--TGCAATACGAGTTC------ACACT-GTGT---T--------TGATGGTTTATTTAG-ACTCTT---ATCA--AATGCTTTTTCTTAGCCCCTTAAAAACAAAAGCAAACTCAACACAAATGACCCCAATCACTACAAAAACCCAACGCACTCCCTCTATCTGAATCTTCACTGGATAGACTTCCGTGTATGTGAAATTACTCCTGGGGTGAGGGTGCGGGTGAAGG-TAA--CAGGTGACCTGTAATGGCCTGTGAATTCCAGTT--------------AGCCACGTGGGTGCCCAGTTGG----------------GAGTCTCCGT-TTTGCCCCGG-GTCTCCTGCATGACACCCG----------CGTCCTGGGTAGCAGTAAACCATGCCCCTCGCCCACATCGGAAACATCGGTTTATGCAGAACCCATTCT-GGTTTGACACCACGCTGTTGGCCGTAGGAGAGCTGTGTGCATCCTGCTCACGCGGCCGCTGAAGAATAAGAAACTAGTTACACTTATTTTGTC------------------TATTTTATGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10653527 581 - 16319837 CTCTCCTCCATCTTTGGTTATAGGA---CT--GAGTTCCCTTTGAGCTCAGTTCTTGACCCTGCCCAATGCTCAACCAGGCGGTGATAGTGGAATGGTGTTAGTCTTTGCGAAA--TGCAATACGAGTTC------ACACT-GTAT---T--------TGATGGTTTATTTAG-ACTCTT---ATCA--AATGCTTTTTCTTAGCCCCTTAAAAACAAAAGCAAACTCAACACAAATGACCCCAATCACTACAAAAACCCAGCGCACTCCCTCTATCTGAATCTTCACTGGATAGACTTCCGTGTATGTGAAATTACTCCTGGGGTGAGGGTGTGGGTGAAGG-TAA--CAGGTGACCTGTAATGGCCTGTGAATTCCAGTT--------------AGCCACGTGGGTGCCCAGTTGG----------------GAGTCTCCGT-TTTGCCCCGG-GTCTCCTGCATGACACCCG----------CGTCCTGGGTAGCAGTAAACCATGCCCCTCGCCCACATCGGAAACATCGGTTTATGCAGAACCCATTCT-GGTTTGACACCACGCTGTTGGCCGTAGGAGAGCTGTGTGCATCCTGCTCACGCGGCCGCTGAAGAATAAGAAACTAGTTACACTTATTTTGTC------------------TATTTTATGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12277173 581 + 20526591 CTCTCTTCCATCTTTGGTTACAGGA---CT--GAGTTCCCTTTGAGCTCAGTTCTTGACCCTGCCCAATGCTCAACCAGGCGGTGATAGTGGAATGGTGTTAGTCTTTGCGAAA--TGCAATACAAGTTC------ACACT-GTGT---T--------TGATGGTTTATTTAG-ACTCTT---ATCA--AATGCTTTTTCTTAGCCCCTTAAAAACAAAAGCAAACTCAACACAAATGACCCCAATCACTACAAAAACCCAACGCACTCCCTCTATCTGAATCTTCATTGGATGGACTTCCGTGTATGTGAAATTACTCCTGGGGTGAGGGTGCGGGTGAAGG-TAA--CAGGTGACCTGTAATGGCCTGTGAATTCCAGTT--------------AGCCACGTGGGTGCCCAGTTGG----------------GAGTCTCCGT-TATGCCCCGG-GTCTCCTGCATGACACCCG----------CGTCCTAGGTAGCAGTAAACCATGCCCCTCGCCCACATCAGAAGCATTGGTTTATGCAGAGCCCATTCT-GGTTTGACACCACGCTGTTGGCCGTAGGAGAGCTGTGTGCATCCTGCTCACGGGGCCGCTGAAGAATAAGAAACTAGTTACACTTATTTTGTC------------------TATTTTATGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119249062 561 + 128539186 CTCTCCTCCATCTTTGGTTACAGGA---CT--GAGTTCCCTTTGAGCTCAGTTCTTGACCCTGCCCAATGCTCAACCAGGTGGTGATAGTGGAATGGTGTTAGTCTTTGCGAAA--AGCAATACAAGTTC------ACGCT-ATGT---T--------TGATGGTTTATTTAG-ACTCTT---ATCA--AATGCTTTTTCTTAGCCCCTTAAAAACAAAAGCAAACTCAACACAAATGACCCCAATCACTACAAAATCCCAATGCATTCCCTCTATCTGAATCTTCATTGGATGGACTTCCGTTTATGTGAAATTACTCCTGGGGTGAGGGTGCGGGTGAAGG-TAA--CAGGTGACCTGTAATGGCCTGTGAATTCCAGTT--------------AGCCATGTGG------------------------------------GT-TATGCCCTGG-GTCTCCTGCGTGACACATG----------CATCCTGGGTAGCAGTAAACCATGCCCCTTGCCCACATCGGAAACATCGGTTTATGCAGAACCCATTCT-GGTTTGACACCACGCTGTTGGCCGTAGGAGAGCTGTGTGCATCCTGCTCACGGGGCCGCTGAAGAATAAGAAACTAGTTACGCTTATTTTGTC------------------TATTTTATGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 591175 581 + 6255621 CTCTCCTCCATCTTTGGTTACAGGA---CT--GAGTTCCCTTTGAGCTCAGTTCTTGACCCTGCCCAGTGCTCAGCCAGGCGCTGACAGTGGAATGGTGTTAGTCTCTGCGAAA--TGCAATACAAGTTC------ACACT-GTGT---G--------TGATGGTTTATTTAG-ACTCTT---ATCA--AATGCTTTTTCTTAGCCCCTTAAAAACAAAAGCAAACTCAACACAAATGACCCCAATCACCACAAAAACCCAACGCACTCCCTCTATCTGAATCTTCATTGGATGGACTTCCGTGTAAGTGAAATTACTCCTGGGGTGAGGGTGCGGGTGAAGG-TCA--CAGGTGACCTGTAATGGCCTGTGAATTCCAGTT--------------AGCCACGTGGGTGCCCAGTTGG----------------GAGTCTCCGT-TATGCCCCGG-GTCTCCTGCATGACACCCG----------CGTCCTGGGTAGCAGTAAACCATGCCCCTCGCCCACATCGGAAACATCGGTTTATGCAGAGCCCATTCT-GGTTTGACACCACGCTGTTGGCCGTAGGAGAGCTGTGTGCATCCTGCTCACGGGGCCGCTGAAGAATAAGAAACTAGTTACACTTATTTTGTC------------------TATTGTATGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4626353 581 - 8658521 CTCTCCTCCATCTTTGGTTACAGGA---CT--GAGTTCCCTTTGAGCTCAGTTCTTGACCCTGCCCAGTGCTCAACCAGGCGGTGATAGTGGAATGGTGTTAGTCTTTGCGAAA--AGCAATACAAGTTC------ACACT-GTGT---T--------TGATGGTTTATTTAG-ACTCTT---GTCA--AATTCTTTTTCTTAGCCCCTTAAAAACAAAAGCAAACTCAACACAAATGACCCCAATCACTACAAAAACCCAACGCACTCCCTCTATCTGAATCTTCATTGGATGGACTTCCGTTTATGTGAAATTACTCCTGGGGTGAGGGTGCGGGTGAAGG-TAG--CAGGTGACCTATAATGGCCTGTGAATTCCAGTT--------------AGCCACGTGGGTGCGCAGTTGG----------------GAGTCTCCAT-TATGCCCTGG-GTCTCCTGCATGACGCCTG----------CGTCCTGGGTGGCAGTAAACCATGCCGCTCGCCCACGTCGGAAACGTCCGTCCATGCAGCAGCCATTCT-GGTGTGACACCTTGCTGTTGGCCGTAGGAGAGCTGTGTGCATCCTGCTCATGGGGCCGCTGAAGAATAAGAAACTAGTTACGCTTATTTTGTC------------------TGTTTTATGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114827593 560 + 124281992 CTCCGCCCCATCTTTGGTTATAGGA---CT--GAGTTCCCTTTGAGCCCAGTTCCTGAACTTGCCCAGTGCTCAGCCCGGCGGTGATGGTGGAAT-GTGTTAGTCTTTGCAAAA--AGCAATACAAGTTC------ATACT-GCGT---T--------TGATGGCTTATTTAG-ACTCGTATCATCA--AACATTTCTTTTTAGTCCCTTAAAAACAAAAGCAAACTCAACACAAATGACCCCAACCCCTAGAAAAACGCAAGGCATTCCC----TCTGAATCTTCACTGGATGGACTTCCACTT------------------------------AGTGAAAT-TAGTCCCGGGG-----TGATGGCCTGTGAATTCCAGTT--------------AGCCACCTAGGTGCCCGGTTGG----------------GAGTCTCCAT-TATGCCCTGG-GTTCCCGGCATGACACCTG----------CGTCTCAGGTAGCAGTAAACCATGCCCCTTGCCCACATCTGAAACATCCGCTTATGCAGAGCCCATTCT-GGTCTGGCACCACGCTGCCAGCTGAAGGAGAGCTGCGTGCGTTCTGCCCACTGGGCCCCTGAGGAAGAAGAAACGAGTTACGCTTACTCTGCCCACAG----TGTATTCCCCACTTTGTGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 472157 579 - 9212255 CTCTACCCCATCTTTGGCTATAGCA---CT--GAGTTCCCTTTGAACCCAGTTCCTGACCCTGCCCAGTGCTCAGCCAGGCGGTGATGGTGGAAT-GTGTTACTCTTTGCAAAA--AGCAATACAAGTTC------ACACT-GGGT---T--------TGATGGCTTATTTAG-ACTCTTATCATCA--AACATTTTTTCTTAGTCCCTTAAAAACAAAAGCAAACTCAACACAAATGACCCCAACCACTAGAAAAATGCAAGGTAGTCCCTCCGTCTGAATCTTCATTGGGTGGACTTCCAGCT----------------GGGGTGAGTGTGTGGGTGAAGG-TGA--CATAGG-----TAATGGCCTGTGAATTCCAGTT--------------AGCCACCTGGGTGCCCAGTTGG----------------GAGTCTCCAT-TATGCCCGGG-GTTCTCGGCGTGACACCTG----------TGTCCCAGGTAGCAGTAAACCATGCGCCTTGCCCACATCTGAAACATCCGCTTATGCGGAGCCCATTCT-GGTCTGGCACCACGCGGCCC-CTGAAGGAGAGCTGCGTGCGTTCTGCTCACAGGGCCCCTGAGGAAGAAGAAACCAGTTACGCTTACTTTGTCCACGGGCAATTTATTCCCTATTTTATGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2891201 588 + 4466143 CTCTCCCCCGTCTTTGGCTATAGCA---CT--GAGTTCCCTTTGAGCCCAGTTCCTGACCCTGCCCAGTGCTCAGCCAGGCGGTGATGGTGGAAT-GTGTTACTCTTTGCAAAA--AGCAATACAAGTTC------ACACT-GTGT---T--------CGATGGCTTATTTGG-ACTCTTATCATCA--AACATTTTTTCTTAGTCCCTTAAAAACAAAAGCAAATTTAACACAAATGACCCCAACCACTAGAAAAATGCAAGGCATTCGCTCTGTCTGAATCTTCATTGGATGGACTTCTACTTACGTGAAATTAGTCCCGGGGTGAGGGTGCGGGTGAAGG-TGA--CACAGG-----TAATGGCCTGTGAATTCTAGTT--------------AGCCACCTGGGTGCCCAGTTGG----------------GAGTCTCCAT-TGTGTCCTGG-GTTCCCGGCGTGACACCCG----------CGTCCCAGGTAGCAGTAAACCATGCACCTCGCCCACATCTGAAACATCCACTTATGCAGAGCCCGTTCT-GGTTTGGCACCAG--------CTGAAGGAGAGCTGTGTGCATTCTGCTCACAGGGTCCCTGAGGAAGAAGAAACAAGTTACGCTTACTTTGTCCACGGGCAATTTGTTCCCTATTTTATGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1593259 567 + 5364348 CTCTCCCCCATCTTTG----------------------------------GTTCCTGACCCTGCACAGTGCTCAGCCAGGCGGTGATGGCGGAAT-GTGTTACTCTTTGCAAAA--AGCAATACAAGTTC------ACACT-GTGT---T--------TGATGGCTTATTTAG-ACTCTTATCATCA--AACATTTTTTCTTAGTCCCTTAAAAACAAAAGCAAACACAACACAAATGACCCCAACCGCTAGAAAAACGCAAGGCATTCCCTCTGTCTGAATCTTCATTGGATGGACTTCCACTTAGGTGAAATTAGTCCCGGGGTGAGGGTGCGGGTGAAGG-TGA--CACAGG-----TAACGGCCTGTGAATTCCAGTT--------------AGCCACCTGGGTGCCCAGTTGG----------------GAGTCTCCAT-TATGCCCTGG-GCTCCCGGCGTGACACCTG----------CATCCCAGGTAGCAGTGAACCATGCCCCTTGCCCGCATCTGAAACATTTGCTTATGCAGAACCCATTCT-GGTTTGGCACCACGCTGCCAGCTGAAGGAGGGCTGCGTGCATTCTGCTCACAGGGCCCCTGAGGAAGAAGAAACGAGTTACGCTTACTTTGTCCATGGGCAATTTGTTCCGTATTTTATGT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4315909 552 + 7922563 C---CCTCCGTCTTTGGTTACAGAA---CTCCAGGCTCCCTTTGAGCCTAATCCCTGACCCTACCAGGTGTTTAGCTAGGCA---------GAATAATGTTA-TCCCAGAATAATGAGCAATACAAGTTC------ATCCT-GTAT---T--------TGACAATTTGTTTAG-AGCTTTATTATCA--AAT-CTTGTTTTTAGCCTCTTAAAAACAAAAGTAAACTAAACACAAACAATGATAACAACTA-AAAAACCCAAAGCACTGCCCCTCTCTGAGTGTAGACTGGGTGGGTTTCCACTTATGTGCTATTACTCCTGAGGTACGTGCACAGGTAGAAG-TGA--CAGATGATCGATAATGGCCTGCATATCCCAGTTAACTGCCTGTGCTGAGCTACCTTGGTGCCCAGTTGG----------------GAGTCCCTAT-TATATCCTGG-GTCCCGAGGGC--------------------TTCTGGGTGGCAGGA------------TATTCATGTCTCAAATATCCGCTTA-------CCCATGCTGGGTTGGGCCTTATACTGATGTTCACAG--GGGCAGTCTGGATTCTGCTTACAGGGTCGCTGAGGAATTAGGAACTTGCTGCACGTACTTTGTC------------------CACAG----- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33169747 536 - 38964690 ---CTCCCCATCTTCAGTTATAGAATGCCT--GCTTTCCCTTTGAGTCTGATGCCTGACTGGCCTAGATGCTTAGCCA-GTGGGGATGA------GGCTTTAGTCTTTGTGAAA--GGTCATTCAAATTCTTAGTGTCACT-GTTTATCT--------TCATGGTTTGTTCAG-AACGTTATTATCA--AATGCTCTTTCTCAGCCACTCAGAAATAAAACTGAGTGAAACACAAAGGA---TAACAACTGTAAAAACCCAAGAACCTCTCTTTACTTGAGTATTGACTGGATGGGTTTCTATTCATGTGAAAC--CTCTTGAGGTGAGGGTATGGGTAGAGG-TGA--T-GGTGACCCATCATGGCATATGAATTTCAGCTAACTCCCTGCTCTGAGCCACTGTGATG--CAGTTGG----------------GGGTCCCCACGGACACCATGG-ACATCC---ATG-TACCTGGATCATAGGATGTCCTGGGCAGTAGTAACCTGTGCCTCTCACTCACATCTGAAGTGTCCACCTACACAAAACTCATTTA-------------------------------------GTGACTCTTGTCCATCGA--------------------CAGTT-----TATTT--CC------------------TATTTTACTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 851927 567 - 1116856 ---CCGTCCTTCTTTCTCTAGAGAATGGCT--GCATTTCCTCTGAGTCTGAATCCTGACCAGAAC--------------------------GGATGATGTTAGTCTTTGCAAAA--GGCAGTAAAAGACT------GTAGTGGTGC---CCTTTACCATGATGGTTTACTCAGAACTTTT---ATTATCAATACTCTTTTTCAGCCCCTTAAAAACAAAACTAAACTAAACAGAAAA-----TAACAACTACAGAATCCCAAGAAGCTCCTTTCTCTTGTGTATTGATTGGGTGGGCTTCTGTTGAGGTTATATTGCTCCCATGGTGAGCTTATGGGTGGAGG-TGA--CAGACGAGCCCAAGGGACCCACTCATCCCAGTA-GCTGCCTGCTCTGAGCTGCGCTGGTGCCTCCTTGGCCCCTGTGGACACCTTGGGTCTCCAG-GGCTCCTGGGTGTCCCATGGAGGGCAGCTGGGTTGCAGA-TATTCTGGGTGGCAGTAGCCTGTGCCCCTCACTCATATCTGGAA-------------------CATTCA-CGTTTGGGCCCAAGCTGTTGTCCATGGGAGAGGTGTCTGGATTCTGCTCACAAGGAATCTGCAG--------GCAATTTTC---TATTTTGTT------------------TTATTT---- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9477097 1050 - 31815103 I e mm10.chr5 124815040 927 + 151834684 I e proCoq1.NW_012154285v1 6730031 900 - 9870158 I a score=11188.000000 s hg38.chr12_KI270834v1_alt 83976 1 + 119498 T s panTro5.chr12 127369934 1 + 137163284 T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721036 1 + 135337776 T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8234386 1 - 8369578 T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97892677 1 + 106955855 T i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124007364 1 + 133663169 T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128255450 1 + 137757926 T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654108 1 - 16319837 T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12277754 1 + 20526591 T i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119249623 1 + 128539186 T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 591756 1 + 6255621 T i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4626934 1 - 8658521 T i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114828153 1 + 124281992 T i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 472736 1 - 9212255 T i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2891789 1 + 4466143 T i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1593826 1 + 5364348 T i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6730931 1 - 9870158 T i proCoq1.NW_012154285v1 I 900 C 0 s otoGar3.GL873618 4316461 1 + 7922563 G i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33170283 1 - 38964690 C i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 852494 1 - 1116856 T i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9477097 1050 - 31815103 I e mm10.chr5 124815040 927 + 151834684 I a score=650815.000000 s hg38.chr12_KI270834v1_alt 83977 48 + 119498 CCCAAGATGAAGCTTGCCACTCATAAAAATTATTGCATGTTTCACGTT- s panTro5.chr12 127369935 48 + 137163284 CCCAAGATGAAGCTTGCCACTCATAAAAATTATTGCATGTTTCACGTT- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721037 48 + 135337776 CCCAAGATGAAGCTTGCCACTCATAAAAATTATTGCATGTTTCACGTT- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8234387 48 - 8369578 CCCAAGAGGAAGCTTGCCGCTCATAAAAATTATTGCATGTTTCACGTT- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97892678 48 + 106955855 CCCAAGATGAAGCTTGCCACTCATAAAAATTATTGCATGTTTCACGTT- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124007365 48 + 133663169 CCCAAGATGAAGCTTGCCACTCATAAAAATTATTGCATGTTTCACGTT- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128255451 48 + 137757926 CCCAAGATGAAGCTTGCCACTCATAAAAATTATTGCATGTTTCACGTT- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654109 48 - 16319837 CCCAAGATGAAGCTTGCCACTCATAAAAATTATTGCATGTTTCACGTT- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12277755 48 + 20526591 CCCAAGATGAAGCTTGCCACTCATAAAAATTATTGCATGTTTCACGTT- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119249624 48 + 128539186 CCCAAGATGAAGCTTGCCACTCATAAAAATTATTGCGTGTTTCACGTC- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 591757 48 + 6255621 CCCAAGATGAAGCTTGCCACTCATAAAAATTATTGCGTGTTTCACGTT- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4626935 48 - 8658521 CCCAAGATGAAGCTTGTCACTCATAAAAATTATTGCATGTTTCACGTT- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114828154 47 + 124281992 CCCAAGATGAAGCTTG-AACTCATAAAAGTTATTGCATGTTTCATGTT- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 472737 47 - 9212255 CCCAAGATGAAGCTTG-CACTCATAAAAATGATTGCATGTTTCACGTT- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2891790 47 + 4466143 CTCAAGATGAAGCTTG-CACTCATAAAAATGATTGCATGTTTCACATT- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1593827 47 + 5364348 CCCAAGGTGAAGCTTG-CACTCATTAAAATTATTGCATGTTTCACATT- i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6730932 48 - 9870158 CCCAAGCTGAAGCTTGCCACTCATAGGAACGATTGCGCTTTTGACTTC- i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4316462 48 + 7922563 CGCAAGTTGAAGCTTGCCACTCATGAAAACAATTCCATCTTTGACTCT- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124815967 37 + 151834684 CCTGGGAGGGAGCTTG----------ACATCACTGCATCTGCCCTCC-- i mm10.chr5 I 927 C 0 s canFam3.chr26 33170284 48 - 38964690 CCCAAGATGAGGCTAGTCACTCATCAAAATTATTGCACCTTTGACCAT- i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 852495 49 - 1116856 CCCTAGATGAAGCTCACCACTCATTGAAATCATTGCATCTTTGATCTTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9477097 1050 - 31815103 I a score=2893906.000000 s hg38.chr12_KI270834v1_alt 84025 148 + 119498 AGGCCTCTTGAAGACTCTTAATACCACAACTGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTTGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCCAAAAGAGAGAAGGTATTGCCC s panTro5.chr12 127369983 148 + 137163284 AGGCCTCTTGAAGACTCTTAATACCACAACTGAAGAAATGGAAGCTGTCAGTAAAGCCGGGCTGGGGATGCTGAAATTTGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCCAAAAGAGAGAAGGTATTGCCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721085 148 + 135337776 AGGCCTCTTGAAGACTCTTAATACCACAACTGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCCAAAAGAGAGAAGGTATTGCCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8234435 148 - 8369578 AGGCCTATTGAAGACTCTTAATACCACAACCGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCCAAAAGAGAGAAGGTATTGCCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97892726 148 + 106955855 AGGCCTCTTGAAGACTCTTAATACCACAAATGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCTAAAAGAGAGAAGGTAGTGCCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124007413 148 + 133663169 AGGCCTCTTGAAGACTCTTAATACCACGACTGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAGATCAAGCCCAAAAGAGAGAAGGTATTGCCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128255499 148 + 137757926 AGGCCTCTTGAAGACTCTTAATACCACGACTGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAGATCAAGCCCAAAAGAGAGAAGGTATTGCCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654157 148 - 16319837 AGGCCTCTTGAAGACTCTTAATACCACGACTGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAGATCAAGCCCAAAAGAGAGAAGGTATTGCCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12277803 148 + 20526591 AGGCCTCTTGAAGACTCTTAATACCACGACTGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAGATCAAGCCCAAAAGAGAGAAGGTATTGCCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119249672 148 + 128539186 AGGCCTCTTGAAGACTCTTAACACCACGACGGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAGATCAAGCCCAAAAGAGAGAAGGTATTGCCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 591805 148 + 6255621 AGGCCTCTTGAAGACTCTTAATACCACGACTGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAGATCAAGCCCAAAAGAGAGAAGGTATTGCCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4626983 148 - 8658521 AGGCCTCTTGAAGACTCTTAATACCACGACTGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCCAAAAGAGAGAAGGTACTGCCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114828201 148 + 124281992 AGGCCTCTTGAAGACCCTCAATGCCACAACTGAAGAAATGGAAGCCGTCAGCAAAGCTGGGCTGGGGATGCTGAAATTCGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCCAAAAGAGAGAAGGTATTGCCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 472784 148 - 9212255 AGGCCTCTTGAAGACACTCAATACCACAACTGAAGAAATGGAAGCCGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTCGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCCAAAAGAGAGAAGGTATTGCCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2891837 148 + 4466143 AGGCCTCTTGAAGACTCTCAATACCACAACTGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTCGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCCAAAAGAGAGAAGGTATTGCCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1593874 148 + 5364348 AGGCCTCTTGAAGACTCTGAATACCACAACTGAAGAAATGGAAGCCGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTCGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCCAAAAGAGAGAAGGTATTGCCC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9478147 148 - 31815103 AGGCCTCCTGAAGACTCTGAACACCACCATCGAAGAAATGGAAGCCGTGAGCAAGGCCGGGCTGGGGATGCTGAAGTTCGTGGAGGCCGTGATGGGCTACTGTGACGTCTTCCGAGAGATCAAGCCCAAAAGAGAGAAGGTATCGCCC i micMur3.chr21 I 1050 C 0 s proCoq1.NW_012154285v1 6730980 148 - 9870158 AGGCCTCCTGAAGACTCTCAACACCACGATCGAGGAGATGGAAGCCGTGAGCAAGGCCGGGCTGGGAATGCTGAAGTTCGTGGAGGCTGTGATGGGCTACTGTGACGTCTTCAGAGAGATCAAGCCCAAAAGAGAAAAGGTATCGCCC i proCoq1.NW_012154285v1 C 0 I 841 s otoGar3.GL873618 4316510 148 + 7922563 AGGCCTCTTGAAGACTCTGAACACCACAATTGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTCGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCCAAGAGAGAGAAGGTATTGCCC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124816004 141 + 151834684 AGGCCTCCTAAAGACTCTGAACACCACAATCGAAGAGATGGAGGCTGTGAGCAAGGCAGGGCTGGGCATGCTGAAGTTCGTGGAGGCCGTCATGGGCTACTGTGATGTGTTTCGGGAGATCAAGCCCAAAAGAGAAAAGGT------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33170333 148 - 38964690 AGGCCTCTTGAAGACCCTCAATACCACAACCGAAGAAATGGAAGCTGTGAGCAAAGCAGGCCTGGGGATGCTGAAATTTGTTGAAGCTGTAATGGGCTACTGTGATGTTTTTAGAGAAATCAAGCCCAAAAGAGAAAAGGTATTGTCC i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 852544 148 - 1116856 AGGCCTCTTAAGGACTCTCAATACCACCATCGAAGAAATGGAAGCTGTCAGCAAAGCAGGATTGGGAATGCTGAAATTTGTTGAAGCTGTAATGGGCTACTGTGATGTTTTTAGAGAAATCAAGCCCAAAAGAGACAAGGTATTGCCC i dasNov3.JH568189 C 0 C 0 a score=13899.000000 s hg38.chr12_KI270834v1_alt 84173 1 + 119498 G s panTro5.chr12 127370131 1 + 137163284 G i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721233 1 + 135337776 G i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8234583 1 - 8369578 G i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97892874 1 + 106955855 G i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124007561 1 + 133663169 G i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128255647 1 + 137757926 G i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654305 1 - 16319837 G i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12277951 1 + 20526591 G i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119249820 1 + 128539186 G i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 591953 1 + 6255621 G i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4627131 1 - 8658521 G i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114828349 1 + 124281992 G i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 472932 1 - 9212255 G i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2891985 1 + 4466143 A i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1594022 1 + 5364348 G i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9478295 1 - 31815103 G i micMur3.chr21 C 0 I 836 s otoGar3.GL873618 4316658 1 + 7922563 G i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124816145 1 + 151834684 G i mm10.chr5 C 0 I 4 s canFam3.chr26 33170481 1 - 38964690 A i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 852692 1 - 1116856 A i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6731128 841 - 9870158 I a score=45344.000000 s hg38.chr12_KI270834v1_alt 84174 6 + 119498 --AATGTA s panTro5.chr12 127370132 6 + 137163284 --AATGTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721234 6 + 135337776 --AATGTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8234584 6 - 8369578 --AATGTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97892875 6 + 106955855 --AATGTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124007562 6 + 133663169 --AATGTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128255648 6 + 137757926 --AATGTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654306 6 - 16319837 --AATGTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12277952 6 + 20526591 --AATGTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119249821 6 + 128539186 --ATTGTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 591954 6 + 6255621 --AATGTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4627132 6 - 8658521 --AATGTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114828350 6 + 124281992 --ACTGTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 472933 6 - 9212255 --ACTGTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2891986 6 + 4466143 --ACTGTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1594023 6 + 5364348 --ACTGTA i aotNan1.NW_018491581v1 C 0 I 2310 s otoGar3.GL873618 4316659 6 + 7922563 --TCTGTA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124816150 2 + 151834684 --AA---- i mm10.chr5 I 4 C 0 s canFam3.chr26 33170482 6 - 38964690 --TGTGTA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 852693 6 - 1116856 CACATG-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I a score=640045.000000 s hg38.chr12_KI270834v1_alt 84180 70 + 119498 AGACTGCCACACCACTGCCAAGGGACCCATTCAGAGTCAGAATTCACATGTACATACCTTTGCTGAAAAA s panTro5.chr12 127370138 70 + 137163284 AGACTGCCACACCACTGCCAAGGGACCCATTCAGAGTCAGAATTCACATGTACATACCTTTGCTGAAAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721240 70 + 135337776 AGACTGCCACACCACTGCCAAGGGACCCATTCAGAGTCAGAATTCACATGTACATACCTTTGCTGAAAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8234590 70 - 8369578 AGACTGCCACACCACTGCCAAGGGACCCATTCAGAGTCAGAATTCACATGTACATACCTTTGCTGAAAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97892881 67 + 106955855 AGACTGCCACACCACTGCACATGTG---ATTCGGAGTCAGAATTCACATGTGCACACCTTTGCTGAAAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124007568 69 + 133663169 AGACTGCCACACCACTGCCAAGAGACCCCTTCAGAGTCAGAATTCACA-GTACACACCTTTGCTGAGAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128255654 69 + 137757926 AGACTGCCACACCACTGCCAAGAGACCCCTTCAGAGTCAGAATTCACA-GTACACACCTTTGCTGAGAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654312 69 - 16319837 AGACTGCCACACCACTGCCAAGAGACCCCTTCAGAGTCAGAATTCACA-GTACACACCTTTGCTGAGAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12277958 69 + 20526591 AGACTGCCACACCACTGCCAAGAGACCCCTTCAGAGTCAGAATTCACA-GTACACACCTTTGCTGAGAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119249827 69 + 128539186 AGACTGCCACACCACTGCCAAGAGACCCCTTCGGAGTCAGAATTCACA-GTACACACCTTTGCTGAGAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 591960 69 + 6255621 AGACTGCCACACCACTGCCAAGAGACCCCTTCAGAGTCAGAATTCACA-GTACACACCTTTGCTGAGAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4627138 70 - 8658521 AGACTGCCACACCGCTGCCAAGAGACCCCTTTGGAGTCAGAATTCACATGTACACACCTTTGCTGAAAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114828356 70 + 124281992 GGGCTGCCACACCACTGCCGGCAGACCCCCTTAGAGTCAGAATTAACATGTACACACCTTTGCTGAAAAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 472939 70 - 9212255 GGACTGCCACAACACTGCCAGCAGACCCACTTAGAGTCAGAATTAACACGTACACACCTTTGCTGAAAAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2891992 70 + 4466143 GGACTGCCACAGTACTGCCAGCAGACCCGCTTAGAGTCAGAATTAACATGTACACACCTTTGCTGAAAAG i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4316665 33 + 7922563 AGACTGGCATACTGCTGCCAAGAGA-------------------------------------ATGAATGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124816152 52 + 151834684 -------GGCCTCGCTGCC-----------CTGGGGTCAGAGTTCAAGTGTCCTTAATTTTGCTGGAAAA i mm10.chr5 C 0 I 379 s canFam3.chr26 33170488 70 - 38964690 AGACCTACACACTGCTGCCAAGAGAGCAACCTGGAGTCAGAATTACTACATCCACAACTTTGCTGGAAAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 852699 58 - 1116856 AGACCTGAAAATCACTGCCGA------------GAGTCAGAAGTAATGTGTCCGTAGCTTTGCCGGAAAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I a score=231324.000000 s hg38.chr12_KI270834v1_alt 84250 21 + 119498 CTTCTCCCGAGGTTCTGACTT s panTro5.chr12 127370208 21 + 137163284 CTTCTCCCGAGGTTCTGACTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721310 21 + 135337776 CTTCTCCCGAGGTTCTGACTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8234660 21 - 8369578 CTTCTCCCGAGGTTCTGACTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97892948 21 + 106955855 CTTCTCCCAAGGTTCTGACTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124007637 21 + 133663169 ATTCTCCCAAGGTTCTGACTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128255723 21 + 137757926 ATTCTCCCAAGGTTCTGACTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654381 21 - 16319837 ATTCTCCCAAGGTTCTGACTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278027 21 + 20526591 ATTCTCCCAAGGTTCTGACTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119249896 21 + 128539186 ATTCTCCCAAGATTCTGACTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592029 21 + 6255621 ATTCTCCCAAGGTTCTGACTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4627208 21 - 8658521 ATTCTCCCAAGGTTCTGACTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114828426 20 + 124281992 ATTCTCCCAA-GTTCTGACTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 473009 21 - 9212255 ATTCTCCCAAGGTTCTGACTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2892062 21 + 4466143 ATTCTCCCAAGGTTCTGACTT i cebCap1.NW_016107484v1 C 0 I 339 s otoGar3.GL873618 4316698 21 + 7922563 GTTCTGGCAAGGTTCTGGCTT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33170558 21 - 38964690 ATTCTGGCAAAGTTCCAATTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 852757 21 - 1116856 ATCCCAGCAAGGTTCTTATTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I a score=48316.000000 s hg38.chr12_KI270834v1_alt 84271 6 + 119498 CAAGCT s panTro5.chr12 127370229 6 + 137163284 CAAGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721331 6 + 135337776 CAAGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8234681 6 - 8369578 CAGGCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97892969 6 + 106955855 CAAGCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124007658 6 + 133663169 TAAACT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128255744 6 + 137757926 TAAACT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654402 6 - 16319837 TAAACT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278048 6 + 20526591 TAAACT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119249917 6 + 128539186 TAAACT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592050 6 + 6255621 TAAACT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4627229 6 - 8658521 TAAACT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114828446 6 + 124281992 TAAACT i calJac3.chr9 C 0 I 302 s saiBol1.JH378194 473030 6 - 9212255 TAAACT i saiBol1.JH378194 C 0 I 285 s otoGar3.GL873618 4316719 6 + 7922563 TAAACA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33170579 6 - 38964690 TAAATC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 852778 6 - 1116856 TAAATC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892083 339 + 4466143 I a score=25847.000000 s hg38.chr12_KI270834v1_alt 84277 3 + 119498 GCA s panTro5.chr12 127370235 3 + 137163284 GCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721337 3 + 135337776 GCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8234687 3 - 8369578 GCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97892975 3 + 106955855 GCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124007664 3 + 133663169 GCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128255750 3 + 137757926 GCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654408 3 - 16319837 GCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278054 3 + 20526591 GCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119249923 3 + 128539186 GCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592056 3 + 6255621 GCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4627235 3 - 8658521 GCA i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4316725 3 + 7922563 GCA i otoGar3.GL873618 C 0 I 1 s canFam3.chr26 33170585 3 - 38964690 ACA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 852784 3 - 1116856 TCA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892083 339 + 4466143 I e saiBol1.JH378194 473036 285 - 9212255 I e calJac3.chr9 114828452 302 + 124281992 I a score=161543.000000 s hg38.chr12_KI270834v1_alt 84280 21 + 119498 TAAACTTTCCCTCCACCACCC s panTro5.chr12 127370238 21 + 137163284 TAAACTTTCCCCCCACCCCCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721340 20 + 135337776 TAAACTTTCCCCCCACC-CCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8234690 20 - 8369578 TAAACTTTCCC-CCACCTCCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97892978 21 + 106955855 TAAACTTTTCCCCCACCCCAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124007667 21 + 133663169 TAAACTTTCCCCCCGCCCCCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128255753 21 + 137757926 TAAACTTTCCCCCCGCCCCCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654411 21 - 16319837 TAAACTTTCCCCCCGCCCCCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278057 21 + 20526591 TAAACTTTCCCCCTGCCCCCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119249926 21 + 128539186 TAAACTTTCCCCCCGCCCCCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592059 21 + 6255621 TAAACTTTCCCCCTGCCCCCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4627238 21 - 8658521 TAAACTTTCCCCCCACCCCCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114828754 21 + 124281992 TAAACATTCTCCCCGCCCCCT i calJac3.chr9 I 302 C 0 s saiBol1.JH378194 473321 21 - 9212255 TAGACATTCCCCCCACCCCCT i saiBol1.JH378194 I 285 C 0 s otoGar3.GL873618 4316729 21 + 7922563 TAAAAACTCCTCTCTCTACCC i otoGar3.GL873618 I 1 I 1 s canFam3.chr26 33170588 21 - 38964690 TAAACATTTCCCCCTCCACCA i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 852787 16 - 1116856 TCAGCCTTCCCTTCCC----- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892083 339 + 4466143 I a score=887921.000000 s hg38.chr12_KI270834v1_alt 84301 95 + 119498 AATAAATGGCAATCCTGAA--ACACCACTATCACTTAGGCATAGTGTGGGTGG-TGGACAAGACCGAG--GTCTGAAAGAGTTTCAAACTTCCTGTGAAA- s panTro5.chr12 127370259 95 + 137163284 AATAAATGGCAATCCTGAA--ACACCACTATCACTTAGGCATAGTGTGGGTGG-TGGACAAGACCGAG--GTCTGAAAGAGTTTCAAACTTCCTGTGAAA- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721360 95 + 135337776 AATAAATGGCAATCCTGAA--ACACCACTATCACTTAGGCATAGTGTGGGTGG-TGGACAAGACCGAG--GTCTGAAAGAGTTTCAAACTTCCTGTGAAA- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8234710 95 - 8369578 AATAAATGGCAATCCTGAA--ACACCACTATCACTTAGGCATAGGGTGGGTGG-TGGACAAGACCGAG--GTCTGAAAGAGTTTCAGACTTCCTGTGAAA- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97892999 95 + 106955855 AATAAATGGCAATCCTGAA--ACACCACTATCACTTAGGTATAGTGTGGGTGG-TGGACAAGACTGAG--GTTTGAAAGAGTTTCAAACTTCCTGTGAAA- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124007688 95 + 133663169 AATAAATGGTAATCCTGAA--ACACCACTATCACTTAGGCATAGTGTGGGTGG-TGGACAAGACCGAG--GTCTGAAAGAGTTTCAAGCTTTCTGTGAAA- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128255774 95 + 137757926 AATAAATGGTAATCCTGAA--ACACCACTATCACTTAGGCACAGTGTGGGTGG-TGGACAAGACCGAG--GTCTGAAAGAGTTTCAAACTTTCTGTGAAA- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654432 95 - 16319837 AGTAAATGGTAATCCTGAA--ACACCACTATCACTTAGGCACAGTGTGGGTGG-TGGACAAGACCGAG--GTCTGAAAGAGTTTCAAACTTTCTGTGAAA- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278078 95 + 20526591 AATAAATGGTAATCCTGAA--ACACCACTATCACTTAGGCACAGTGTGGGTGG-TGGACAAGACCGAG--GTCTGAAAGAGTTTCAAACTTTCTGTGAAA- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119249947 95 + 128539186 AATAAATGGTAATCCTGAA--ACACCACTATCACTTAGGCACAGTGTGGGTGG-TGGACAAGACCGAG--GTCTGAAAAAGTTTCAAACTTTCTGTGAAA- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592080 95 + 6255621 AATAAATGGTAATCCTGAA--ACACCACTATCACTTAGGCACAGTGTGGGTGG-TGGACAAGACCGAG--GTCTGAAAGAGTTTCAAACTTTTTGTGAAA- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4627259 95 - 8658521 AATAAATGGTAATCCTGAA--ACACCACTATCACTTAGGCAGAGTGTGGGTGG-TGTACAAGACCGAG--GTCTGAAAGAGTTTCAAACTTTCTGTGAAA- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114828775 90 + 124281992 AATAAATGGTAATCCTGAA--ACACAACT-TCATTTAGGCATCCTGCAGGTGG-TAGACAAAACTGAG--GTCTG----ATTTTGAACCTGTATGTGAAA- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 473342 91 - 9212255 AATAAATGATAATCCTGAA--ACACAACTATCATTTAGGCATCGCACAGCTGG-TAGACAAAACTGAG--GTCTG----ATTTTCAACCTGCATGTGAAA- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2892422 91 + 4466143 AATAAATGGTAATCCTGAA--ACACAACTATCATTTAGGCATCGTGCAGGTGG-TAGACAAAACCGAG--GTCTG----ATTTTCAACCTGTATGTGAGA- i cebCap1.NW_016107484v1 I 339 C 0 s otoGar3.GL873618 4316751 82 + 7922563 AATAA------------AA--GTACAACTCTCATTTAGGTATAATGTAGATGG----AGAGAACTGGGGAGAACAAAAGATTTTCAGATTATATGTGAAA- i otoGar3.GL873618 I 1 C 0 s canFam3.chr26 33170611 95 - 38964690 AATAAATGATAACCTTGAATTATATAACTCTCATCTGG--ACAGTGTGAATGAACTGGCGGAACCAAA--GTCTGGAAGA-TTTCAAATTTTGTGTGAAA- i canFam3.chr26 I 2 I 73 s dasNov3.JH568189 852803 93 - 1116856 AGTAGATGAAAACCCTCAA--ATGCATCTCCCACTTAGATGAGATGTGAACTG----ACAGAACTGGG--GTTTGAAAGGTTGTAAAATTCTGTGTGAAAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I a score=134476.000000 s hg38.chr12_KI270834v1_alt 84396 16 + 119498 GTGTAGTAT-A-AAGATG s panTro5.chr12 127370354 14 + 137163284 GTGTAG--T-A-AAGATG i panTro5.chr12 C 0 I 68 s panPan2.chr12 125721455 16 + 135337776 GTGTAGTAT-A-AAGATG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8234805 16 - 8369578 GTGTAGTAT-A-AAGATG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97893094 16 + 106955855 GTGTGGTAT-A-AAGATG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124007783 16 + 133663169 GTGTGGTAT-A-GAGATG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128255869 16 + 137757926 GTGTGGTAT-A-GAGATG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654527 16 - 16319837 GTGTGGTAT-A-GAGATG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278173 16 + 20526591 GTGTGGTAT-A-AAGATG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250042 16 + 128539186 GTGTGGTAT-A-AAGATG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592175 16 + 6255621 GTGTGGTAT-A-AAGATG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4627354 16 - 8658521 GTGTGGTAT-A-AAGATG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114828865 17 + 124281992 GTGTAGCATAA-AAGATG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 473433 17 - 9212255 GCGTAGCATAA-AAGATG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2892513 17 + 4466143 GTGTAGCATAA-AAGATG i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4316833 17 + 7922563 ATGTGGGAT-ATAAGATG i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 852896 17 - 1116856 GAGTAGGATAA-AAGATG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e canFam3.chr26 33170706 73 - 38964690 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I a score=41963.000000 s hg38.chr12_KI270834v1_alt 84412 6 + 119498 TTCAga s panPan2.chr12 125721471 6 + 135337776 TTCAga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8234821 6 - 8369578 TTCAga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97893110 6 + 106955855 TTCAga i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124007799 6 + 133663169 TTCAga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128255885 6 + 137757926 TTCAga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654543 6 - 16319837 TTCAga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278189 6 + 20526591 TTCAga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250058 6 + 128539186 TTCAga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592191 6 + 6255621 TTCAga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4627370 4 - 8658521 TTCA-- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114828882 6 + 124281992 TTTGgg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 473450 6 - 9212255 TTTAgg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2892530 6 + 4466143 TTTAgg i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4316850 6 + 7922563 TTTAAA i otoGar3.GL873618 C 0 I 77 s dasNov3.JH568189 852913 6 - 1116856 TTCAAA i dasNov3.JH568189 C 0 I 64 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e canFam3.chr26 33170706 73 - 38964690 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e panTro5.chr12 127370368 68 + 137163284 I a score=414012.000000 s hg38.chr12_KI270834v1_alt 84418 62 + 119498 ccaggcgtggtagctcatgcctgtaat-ccagcactttggaaggcccagatgggaggatcact s panPan2.chr12 125721477 62 + 135337776 ccaggcgcggtggctcatgcctgtaat-cctgcactttggaaggcccagatgggaggatcgct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8234827 62 - 8369578 ccaggcgtggtggctcatgcctgtaat-ccagcactttggaaggcccagatgggaggatcgct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97893116 62 + 106955855 ccaggcgtggtggctcatgcctgtaat-ccagcactttggaaggcccagatgggaggatcgct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124007805 62 + 133663169 ccaggcgcggtggctcacgcctgtaat-ccagcactttggaaggcccagacgggaggatcact i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128255891 62 + 137757926 ccaggcgcggtggctcacgcctgtaat-ccagcactttggaaggcccagacgggaggatcact i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654549 62 - 16319837 ccaggcgcggtggctcacgcctgtaat-ccagcactttggaaggcccagacgggaggatcact i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278195 58 + 20526591 ccaggtgcggtggctcacctttgga-----aggcctttggaaggcccagacgggaggatcact i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250064 62 + 128539186 ccaggcgtggtggctcacgcctgtaat-ccagcactttggaaggcccagacgggaggatcact i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592197 62 + 6255621 ccaggcgcggtggctcacgcctgtaat-ccagcactttggaaggcccagacgggaggatcact i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4627374 56 - 8658521 ------gtggtggctcatgcctgtaat-ccagcactttggaaggcccagacgggaggatcact i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114828888 63 + 124281992 ccaggcccaatgagtcttgcctataatcccagcactttggaaggcccaggtgggaggctcgct i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 473456 63 - 9212255 ccaggcgcagtgactctcgcctatagtcccagcactttggaaggcccaggtgggaggttcgct i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2892536 62 + 4466143 ccaggtgcggtgactcttgcctataatcccagcactttggaa-gcccaggtgggaggttcgct i cebCap1.NW_016107484v1 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e panTro5.chr12 127370368 68 + 137163284 I a score=1880214.000000 s hg38.chr12_KI270834v1_alt 84480 249 + 119498 tgagcccaggagtttgaaaccagcttgggcaacat--agtgagaccctgtctctacaaaaaaaaagttt--tttaattagccgagcatggtggcacacacctgtactgccagctacttgg-gaggctgcagtgagctgtgattgtaccactgca-ctccagcc---taggtgacag-agtgagaccctgtctc----------aaaaa-aaaaaaaaTGACGTAAAGATGTT-TAAAGTTGTTTCTCTAG--GGTCAAAGCAGAGTTTCTCAG s panTro5.chr12 127370436 261 + 137163284 tgagcccaggagtttgaaacagctttgggcaacattaggtgagaccctgtctctacaaaaaaaaaattttatttaattag-ggagcagggtggc-cacacctgtactg-cagctacttggagaggc-gcagttagcagtgattgtaccactgcagctccagccttttggctgacagaagtga-accctgtctc------aaaaaaaaa-aaaaaaaaagaCGTAAAGATGTTGTAAAGTTGTTTCTCTGCCTGGTCAAAGCAGAGTTTCTCAG i panTro5.chr12 I 68 C 0 s panPan2.chr12 125721539 250 + 135337776 tgagcccaggagtttgaaaccagcttgggcaacat--agtgagaccctgtctctac-aaaaaaaatttt--tttaattagcggagcatggtggcacacacctgtactgccagctacttgg-gaggctgcagtgagccgtgattgtaccactgca-ctccagcc---ttggtgacag-agtgagaccctgtctc--------aaaaaaa-aaaaaaaaCGACGTAAAGATGTT-TAAAGTTGTTTCTCTAG--GGTCAAAGCAGAGTTTCTCAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8234889 248 - 8369578 tgagcccaggagtttgaaaccagcttgggcaacat--agtgagaccctgtctctacaaaaaaaaatttt--tttaattagccgagtatggtggcacacacctgtactgccagctacttgg-gaggctgcagtgagccgtgattgtaccactcca-ctccagcc---taggtgacag-agtgagaccctgtctc-----------aaaa-aaaaaaaaaGATGTAAAGATGTT-TAAAGTTGTTTCTCTAG--GGTCAAAGCAGAGTTTCTCAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97893178 256 + 106955855 tgagcccaggagtttgaaaccagcttgggcaacat--agtgagaccctgttgctac-aaaaaaattttt--tttaattagccgagcatggtggcacacacctgtactgccagctacttgg-gaggctgcagtgagccgtgattgtaccactgca-ctccagcc---tgggtgacag-agtgagaccttgtctcaaaaaaaaaaaaaaa-aaaaaaaaaGATGTAAAGATGTT-TAAAGTTGTTTCTCTAG--GGTCAAAGC--AGTTTCTCAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124007867 248 + 133663169 gtagcccaggagtttgagatcagcttgggcaacat--agtgagaccctgtctctac-aaaaaaaatttttttttaattagccgagcatggtggcaca-----------ccagctacttgg-gaggctgcagtaagccgtgattgtaccactgca-ctccagcc---tgggtgacag-agtgagaccctgtctc-aaaaacgaaaaaag-aaaaaaaaaGACACAAAGATGTT-TAAAGTTGTTTCTCTAG--GGTCAAAGCAGAGTTTCTCAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128255953 248 + 137757926 gtagcccaggagtttgagatcagcttgggcaacat--agtgagaccctgtctctac-aaaaaaaatttttttttaattagccgagcatggtggcaca-----------ccagctacttgg-gaggctgcagtaagccgtgattgtaccactgca-ctccagcc---tgggtgacag-agtgagaccctgtctc-aaaaacgaaaaaag-aaaaaaaaaGACACAAAGATGTT-TAAAGTTGTTTCTCTAG--GGTCAAAGCAGAGTTTCTCAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654611 248 - 16319837 gtagcccaggagttggagatcagcttgggcaacat--agtgagaccctgtctctac-aaaaaaaatttttttttaattagccgagcatggtagcaca-----------ccagctacttgg-gaagctgcagtaagccgtgattgtaccactgca-ctccagcc---tgggtgacag-agtgagaccctgtctc-aaaaacgaaaaaag-aaaaaaaaaGACACAAAGATGTT-TAAAGTTGTTTCTCTAG--GGTCAAAGCAGAGTTTCTCAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278253 246 + 20526591 ctagcccaggagtttgagatcagcttgggcaacat--agtgagaccctgtctctac-aaaaaaaatttttttttaattagccgagcatggtggcaca-----------ccagctacttgg-gaggctgcagtaagccgtgattgtaccactgca-ctccagcc---tgg--gacag-agtgagaccctgtctc-aaaaacgaaaaaag-aaaaaaaaAGACATAAAGATGTT-TAAAGTTGTTTCTCTAG--GGTCAAAGCAGAGTTTCTCAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250126 256 + 128539186 ctagcccaggagtttgagatcagcttgggcaacat--agtgagaccctgtctctac-aaaaaacaatttttttaaattagccgagcatggtggcacacacctgtactgccagctacatgg-gaggctgcagtaagccgtgattgtaccactgca-ctccagcc---tgggtgacag-agtgagaccctgtctc-aaaaaag---aaaa-aagaaaaaagacataaagaTGTT-TAAAGTTGTTTCTCTAG--GGTCAAAGCAGAGTTTCTCAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592259 246 + 6255621 ctagcccaggagtttgagatcagcttgggcaacat--agtgagaccctgtctctac-aaaaaaattttttttttaattagccgagcatggtggcaca-----------ccagctacttgg-gaggctgcagtaagccgtgattgtaccactgca-ctccagcc---tgggtgacag-agtgagaccctgtctc-aaaaatg--aaaaa-aaaaaaaaagacataaaGATGTT-TAAAGTTGTTTCTCTAG--GGTCAAAGCAGAGTTTCTCAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4627430 260 - 8658521 ctagcccaggagtttgagatcagcttgggcaacat--agtgagaccctgtctctac-aaaagaattttttttttaattagccgagcatggtgacacacacctgtactgcccgctacttgg-gaggctgcagtaagccatgattgtaccactgca-ctccagcc---tgggtgacag-agtgagaccctgtctc-aaaaaagaaaaaagaaaaaaaaaagaCATAAAGATGTT-TAAAGTTGTTTCTCTAG--GGTCAAAGCAGAATTTCTCAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114828951 240 + 124281992 tgagcgcaggagtttgagaccagcttgggcaacat--agtgagatcctgtctctac-aaaaaaattttt--aaaaattagctgagcatggtggcacacacctgtactgccagccacttgg-gaggctgcagtgagccctgatcgtagcactgta-ctccagtc---tgggagacac-agtgagaccctgtctc----------aaaaa-aaaaaaaaaG--------ATATT-TAAAGTTGATTCTCTAG--GGTCAAGGCAGAGTTTCTCGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 473519 244 - 9212255 tgagcgcaggagttggagaccagcttgggcaacat--agtgagaccctgtctctac-aaaaaaaatttt--aaaaattagccgagcatggtggcgcacacctgcactgccagccacttgg-gaggcttcagtgagccgtgattgtaccactgca-ctccagcc---tgggtgacac-agtgagaccctgtctc----------aaaaa-aaaaaaaaaa----aaaCATGTT-TAAAGTTGTTTCTCTAG--GGTCAAGGCAGAGTTTCTCAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2892598 239 + 4466143 ggagcgcaggagtttgagagcagcttgggcaacat--agtgagaccctgtctctac-aaaaaaaattta--aaaacttagccgagcatggtggcacacacctgcactgccagccacttgg-gaggctgcagtgaaccgtgattgtaccactgca-ctccagcc---tgggcgacac-agtgagaccctgtctc----------aaaaa-aaaaaaaaG---------ATGTT-TAAAGTTGTTTCTCTAG--GGTCAAGGCAGAGTTTTTCAG i cebCap1.NW_016107484v1 C 0 I 57 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I a score=27508.000000 s hg38.chr12_KI270834v1_alt 84729 6 + 119498 C-TGCAG s panTro5.chr12 127370697 7 + 137163284 CTTGCAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721789 6 + 135337776 C-TGCAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235137 6 - 8369578 C-TGCAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97893434 6 + 106955855 C-TGCAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124008115 6 + 133663169 C-TGCAG i rheMac8.chr11 C 0 I 30 s macFas5.chr11 128256201 6 + 137757926 C-TGCAG i macFas5.chr11 C 0 I 5 s macNem1.NW_012010578v1 10654859 6 - 16319837 C-TGCAG i macNem1.NW_012010578v1 C 0 I 30 s cerAty1.NW_012001186v1 12278499 6 + 20526591 C-TGCAG i cerAty1.NW_012001186v1 C 0 I 27 s chlSab2.chr11 119250382 6 + 128539186 C-TGCAG i chlSab2.chr11 C 0 I 5 s manLeu1.NW_012103587v1 592505 6 + 6255621 C-TGCAG i manLeu1.NW_012103587v1 C 0 I 31 s colAng1.NW_012116043v1 4627690 6 - 8658521 C-TGCAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114829191 6 + 124281992 -TGGTAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 473763 6 - 9212255 -TGGCAG i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I a score=4500.000000 s hg38.chr12_KI270834v1_alt 84735 1 + 119498 C s panTro5.chr12 127370704 1 + 137163284 C i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721795 1 + 135337776 C i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235143 1 - 8369578 C i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97893440 1 + 106955855 C i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128256212 1 + 137757926 C i macFas5.chr11 I 5 C 0 s chlSab2.chr11 119250393 1 + 128539186 C i chlSab2.chr11 I 5 C 0 s colAng1.NW_012116043v1 4627696 1 - 8658521 C i colAng1.NW_012116043v1 C 0 I 438 s calJac3.chr9 114829197 1 + 124281992 C i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 473769 1 - 9212255 C i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e rheMac8.chr11 124008121 30 + 133663169 I a score=10785.000000 s hg38.chr12_KI270834v1_alt 84736 21 + 119498 T-------GAATGTGGCCTGGTGGTGGT s panTro5.chr12 127370705 20 + 137163284 T--------AATGCGGCCTGACGGTGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721796 21 + 135337776 T-------GAATGCGGCCTGGTGGTGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235144 21 - 8369578 T-------GAATGCGGCCTGGTGGTGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97893441 27 + 106955855 ACC-GTTGAAGTGCTGCCTGGCTGTGGT i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128256213 22 + 137757926 ------TAAAGTGCTGCCTGGCGGTAGT i macFas5.chr11 C 0 I 2 s chlSab2.chr11 119250394 22 + 128539186 ------TAAAGTGCTGCCTGGCGGTAGT i chlSab2.chr11 C 0 I 1 s calJac3.chr9 114829198 17 + 124281992 -ACCGTGGAAGCGCTGCC---------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 473770 17 - 9212255 -ACTGTTGAAGCGCTGCC---------- i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e rheMac8.chr11 124008121 30 + 133663169 I a score=11809.000000 s hg38.chr12_KI270834v1_alt 84757 16 + 119498 GGGG--GG-T-CTGTCCTG-G s panTro5.chr12 127370725 19 + 137163284 GGGGCCGG-TCCTGTCCTG-G i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721817 16 + 135337776 GGGG--GG-T-CTGTCCTG-G i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235165 16 - 8369578 GGGG--GG-T-CTGTCCTG-G i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97893468 7 + 106955855 GGGG--GG-G----------- i nomLeu3.chr10 C 0 C 0 s chlSab2.chr11 119250417 17 + 128539186 GGGG--GG-T-CTGTCCTGAG i chlSab2.chr11 I 1 C 0 s calJac3.chr9 114829215 15 + 124281992 --TG--GGTT-CTGTCCTG-G i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 473787 14 - 9212255 --TG--GG-T-CTGTCCTG-G i saiBol1.JH378194 C 0 I 11 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I a score=3615.000000 s hg38.chr12_KI270834v1_alt 84773 3 + 119498 GGG s panTro5.chr12 127370744 3 + 137163284 GCG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721833 3 + 135337776 GGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235181 3 - 8369578 GGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97893475 1 + 106955855 --G i nomLeu3.chr10 C 0 C 0 s chlSab2.chr11 119250434 3 + 128539186 GGG i chlSab2.chr11 C 0 C 0 s calJac3.chr9 114829230 3 + 124281992 GGG i calJac3.chr9 C 0 I 9 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I a score=14804.000000 s hg38.chr12_KI270834v1_alt 84776 14 + 119498 ATCTGTCCT--GGGGG- s panTro5.chr12 127370747 14 + 137163284 ATCTGTCCT--GGGGG- i panTro5.chr12 C 0 I 106 s panPan2.chr12 125721836 14 + 135337776 ATCTGTCCT--GGGGG- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235184 14 - 8369578 GTCTGTCCT--GGGGG- i gorGor5.CYUI01015152v1 C 0 I 1 s nomLeu3.chr10 97893476 16 + 106955855 GTCTGTCCTTCGGGGG- i nomLeu3.chr10 C 0 C 0 s chlSab2.chr11 119250437 15 + 128539186 GTCTGTCCT--GGGGGG i chlSab2.chr11 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I a score=1910.000000 s hg38.chr12_KI270834v1_alt 84790 2 + 119498 GT s panPan2.chr12 125721850 2 + 135337776 GT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235199 2 - 8369578 GT i gorGor5.CYUI01015152v1 I 1 C 0 s nomLeu3.chr10 97893492 2 + 106955855 GT i nomLeu3.chr10 C 0 C 0 s chlSab2.chr11 119250452 2 + 128539186 GT i chlSab2.chr11 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e panTro5.chr12 127370761 106 + 137163284 I a score=1146.000000 s hg38.chr12_KI270834v1_alt 84792 2 + 119498 CT s gorGor5.CYUI01015152v1 8235201 2 - 8369578 CT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97893494 2 + 106955855 CT i nomLeu3.chr10 C 0 C 0 s chlSab2.chr11 119250454 2 + 128539186 CT i chlSab2.chr11 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e panPan2.chr12 125721852 0 + 135337776 C e panTro5.chr12 127370761 106 + 137163284 I a score=36585.000000 s hg38.chr12_KI270834v1_alt 84794 68 + 119498 GTCCTGG-GGGGGGTCTGTCCTGGGGGG--TCTGTCCTGGGGGGG-GTCTGTCCTGGGGGGTCTGTCCTGGG s panTro5.chr12 127370867 67 + 137163284 GTCCTGG-GGGGGGTCTGTCCTGGGGAGGATCTGTCCCGGGGG----TCTGTCCCGGGGGGACTGTCCTGGG i panTro5.chr12 I 106 C 0 s gorGor5.CYUI01015152v1 8235203 52 - 8369578 GTCCTGG-GGGGGGTCTGTCCTGGGGG---TCTGTCCCGGGGG----------------GGTCTGTCCTGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97893496 70 + 106955855 GTCCTGGAGGGGAGTCTGTCCTGGGGGG--TCTGTCTTGGAGGGGAGTCTGTCCTGTGGGGTCTGTCCCAGG i nomLeu3.chr10 C 0 C 0 s chlSab2.chr11 119250456 66 + 128539186 GTCCTG--GGGGGGTCTGTCCTGAGGGGG-TCTGTCCTGGGGGGG--tctgtcctggg-ggtctgtcctggg i chlSab2.chr11 C 0 T 107 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e panPan2.chr12 125721852 0 + 135337776 C a score=10965.000000 s hg38.chr12_KI270834v1_alt 84862 40 + 119498 GGGGGTCTGTC------------------------------------CTGGGGGAGTCTGT-CCTGGGGGGGTCTGT s panTro5.chr12 127370934 77 + 137163284 GGGATGCTGTCCTGGGGGGCGTCTTGTCGCTGGGGTGCGTCGTGTCGCTGGGGGGGTCTGTGCTTGGGGGAGTCTGT i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235255 44 - 8369578 GGGGGTCTGTCCTTGGG--------------------------------GGGGGGGTCTGT-CCTGGGGGGGTCTGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97893566 45 + 106955855 GGG--TCTGTCCTGGGGGGA-----------------------------GAGGGGGTCTGT-CCTGGGGGGGTCTGT i nomLeu3.chr10 C 0 M 872 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e panPan2.chr12 125721852 0 + 135337776 C a score=5792.000000 s hg38.chr12_KI270834v1_alt 84902 27 + 119498 CCT--GGGGGG--TTTGTCCTGGGGGGGGTC s panTro5.chr12 127371011 29 + 137163284 CCT--GGGGGGGGTCTGTCCTGGGGGGGGTC i panTro5.chr12 C 0 I 196 s gorGor5.CYUI01015152v1 8235299 31 - 8369578 CCTTGGGGGGGGGTCTGTCCCGGGGGGGGTC i gorGor5.CYUI01015152v1 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e panPan2.chr12 125721852 0 + 135337776 C a score=573.000000 s hg38.chr12_KI270834v1_alt 84929 6 + 119498 TGTCCT s gorGor5.CYUI01015152v1 8235330 6 - 8369578 TGTCCT i gorGor5.CYUI01015152v1 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e panPan2.chr12 125721852 0 + 135337776 C e panTro5.chr12 127371040 196 + 137163284 I a score=6274.000000 s hg38.chr12_KI270834v1_alt 84935 29 + 119498 GGGGGCGTCTGTCCTGGGAGGGGTCTGTC s panTro5.chr12 127371236 29 + 137163284 GGGGGCGTCTGTCCTGGGGGGGATCTGTC i panTro5.chr12 I 196 I 63 s gorGor5.CYUI01015152v1 8235336 27 - 8369578 GGGGGTATCTGTCCTGG--GGGGTCTGTC i gorGor5.CYUI01015152v1 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e panPan2.chr12 125721852 0 + 135337776 C a score=660.000000 s hg38.chr12_KI270834v1_alt 84964 8 + 119498 CTGGGGGG s gorGor5.CYUI01015152v1 8235363 8 - 8369578 CTGGGGGA i gorGor5.CYUI01015152v1 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e panPan2.chr12 125721852 0 + 135337776 C e panTro5.chr12 127371265 63 + 137163284 I a score=0.000000 s hg38.chr12_KI270834v1_alt 84972 2 + 119498 GT e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e gorGor5.CYUI01015152v1 8235371 0 - 8369578 C e panPan2.chr12 125721852 0 + 135337776 C e panTro5.chr12 127371265 63 + 137163284 I a score=11593.000000 s hg38.chr12_KI270834v1_alt 84974 174 + 119498 CTGTCCTGGAAGGGGGTCTGTCCTGGGGGGGTCAGTCCTGGGGGTTCTGTCTTGG-GGGGTCTGTCCTGGGAGCATAAGACCTGGGGGGGTCTGTCCTG--------------GGGGGGTCTGTCATGGGGGGATCTGTCCTGGGGGGTTTGTCCTGGGGGAGT---CTGTCCTGGGGGTGGTCTGTCCTGG s gorGor5.CYUI01015152v1 8235371 189 - 8369578 CTGTCCTG---GGGAGTCTGTCCTGGGGGAGTCTGTCCTGGGGGGTCTGTCCTGGAGGGGTCTGTCCTGGGAGGGCCTGTCCTGGGGGGGTCTGTCCTGGGGGGGGTCTTCCTGGGGGGTCTGTCCTGGGGGGATCTGTCCTGGGGGGTCTGTCCTGGGGGGGGGGACTGTCCTGGGgggggtctgtcctgg i gorGor5.CYUI01015152v1 C 0 T 395 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e panPan2.chr12 125721852 0 + 135337776 C e panTro5.chr12 127371265 63 + 137163284 I a score=0.000000 s hg38.chr12_KI270834v1_alt 85148 20 + 119498 AGGGGTCTGTCCTAGGGGCC e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e gorGor5.CYUI01015152v1 8235560 395 - 8369578 T e panPan2.chr12 125721852 0 + 135337776 C e panTro5.chr12 127371265 63 + 137163284 I a score=4006.000000 s hg38.chr12_KI270834v1_alt 85168 54 + 119498 TGTCCTGGGGGGTTTGTCCTGGGGGGGTTTGTCCTGGGGGGGTCTGTCCTGGGG s panTro5.chr12 127371328 53 + 137163284 TGTCCTGGAGGGTCTGTCCTGGGGGG-TCTGTCCCGGGGTGGTCTGTCCTGGGG i panTro5.chr12 I 63 I 57 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e gorGor5.CYUI01015152v1 8235560 395 - 8369578 T e panPan2.chr12 125721852 0 + 135337776 C a score=0.000000 s hg38.chr12_KI270834v1_alt 85222 8 + 119498 GGGGGGTC e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e gorGor5.CYUI01015152v1 8235560 395 - 8369578 T e panPan2.chr12 125721852 0 + 135337776 C e panTro5.chr12 127371381 57 + 137163284 I a score=3668.000000 s hg38.chr12_KI270834v1_alt 85230 43 + 119498 TGTCCTGGGGGAGTCTGTCCTAGGGGGGTCTGTCCTGGGAAGG s panTro5.chr12 127371438 43 + 137163284 TGTCCTGGGGGAGTCTGTCCCGGGGGAGTCTGTCCTGGGGAGG i panTro5.chr12 I 57 I 4 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e gorGor5.CYUI01015152v1 8235560 395 - 8369578 T e panPan2.chr12 125721852 0 + 135337776 C a score=0.000000 s hg38.chr12_KI270834v1_alt 85273 46 + 119498 ACTGTCCTGGGGGGACTGTCCTGGGGGGTCTGTCCCGGGGGGACTG e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e gorGor5.CYUI01015152v1 8235560 395 - 8369578 T e panPan2.chr12 125721852 0 + 135337776 C e panTro5.chr12 127371481 4 + 137163284 I a score=5202.000000 s hg38.chr12_KI270834v1_alt 85319 69 + 119498 TCCTGGGGGGTCTGTCCCAGGGG-ATCTGTCCTGGGGGGGGTCTGTCCCGGGGGG--TCTGTCCTGGGGGGA s panTro5.chr12 127371485 72 + 137163284 TCCTGGGGAGTCTGTCCTGGGGGCATCTGTCCTGGGGGGGGTCTGTCCTGGGGGGGATCTGTCCCGGGGGGA i panTro5.chr12 I 4 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e gorGor5.CYUI01015152v1 8235560 395 - 8369578 T e panPan2.chr12 125721852 0 + 135337776 C a score=11884.000000 s hg38.chr12_KI270834v1_alt 85388 44 + 119498 CTGTCCTGGGGGGATCTGTCCTGGGGGGGTCTGTCCTGGGGGCA s panTro5.chr12 127371557 44 + 137163284 CTGTCCTGGGGGGATCTGTCCTGGGGGAGTCTGTCCTGGGGGCG i panTro5.chr12 C 0 T 163 s panPan2.chr12 125721852 44 + 135337776 CTGTCCTGGCGGGATCTGTCCTGGGGGAGTCTGTCCTGGGGGCA i panPan2.chr12 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e gorGor5.CYUI01015152v1 8235560 395 - 8369578 T a score=0.000000 s hg38.chr12_KI270834v1_alt 85432 235 + 119498 TCCGTCCTGGGGGGGTCTGTCCTGGGGGGGGTCTGTCCTGGGGGGGTCTGTCCTGGGGGGGTCTGTCCCGGGGGGACTGTCCTGGGGGGGTCTGTCCTGGGGGCGTCTGTCCTGGGGGTGGTCTGTCCTGGGGGGGGTCTGTCCTGGGGGGGTCTGTCCCAGGGGATCTGTCCTTGGGGGACTGTCCTGGGGGGGTCTGTCCTGGGGGCATCTGTCCTGGGGGGGGTCTGTCCTG e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e gorGor5.CYUI01015152v1 8235560 395 - 8369578 T e panPan2.chr12 125721896 0 + 135337776 C e panTro5.chr12 127371601 163 + 137163284 T a score=4246.000000 s hg38.chr12_KI270834v1_alt 85667 50 + 119498 GGGGGGTCTGTCCCAGGGGGTCTGTCCTGGGGGGATCTGTCCTGGGGAGG s gorGor5.CYUI01015152v1 8235165 50 - 8369578 GGGGGGTCTGTCCTGGGGGGTCTGTCCTGGGGGAGTCTGTCCTGGGGGGG i gorGor5.CYUI01015152v1 T 395 I 90 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e panPan2.chr12 125721896 0 + 135337776 C e panTro5.chr12 127371601 163 + 137163284 T a score=0.000000 s hg38.chr12_KI270834v1_alt 85717 84 + 119498 TCTGTCCTGGGGGGTCTGTCCTGGAGGTGTCTGTCCTTGGTGGGGGTCTGTCCTGTGGGATTCTGTCCTGGGGGGGTCTGTCCT e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e gorGor5.CYUI01015152v1 8235215 90 - 8369578 I e panPan2.chr12 125721896 0 + 135337776 C e panTro5.chr12 127371601 163 + 137163284 T a score=3970.000000 s hg38.chr12_KI270834v1_alt 85801 57 + 119498 GGGGGCGTCTGTCCTGGGAGGGGTCTGTCCTGGGGGGGTCTGTCCTGGGGGGGGGTC s gorGor5.CYUI01015152v1 8235305 54 - 8369578 GGGGGGGTCTGTCCCGGGGGGGGTCTGTCCTGGGGGTATCTGTCCTGGGGGG---TC i gorGor5.CYUI01015152v1 I 90 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e panPan2.chr12 125721896 0 + 135337776 C e panTro5.chr12 127371601 163 + 137163284 T a score=3248.000000 s hg38.chr12_KI270834v1_alt 85858 12 + 119498 TGTCCTGGGGGG s panTro5.chr12 127371438 12 + 137163284 TGTCCTGGGGGA i panTro5.chr12 T 163 C 0 s gorGor5.CYUI01015152v1 8235359 12 - 8369578 TGTCCTGGGGGA i gorGor5.CYUI01015152v1 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e panPan2.chr12 125721896 0 + 135337776 C a score=191.000000 s hg38.chr12_KI270834v1_alt 85870 2 + 119498 GT s panTro5.chr12 127371450 2 + 137163284 GT i panTro5.chr12 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e gorGor5.CYUI01015152v1 8235371 0 - 8369578 C e panPan2.chr12 125721896 0 + 135337776 C a score=14327.000000 s hg38.chr12_KI270834v1_alt 85872 79 + 119498 CTGTCCTGGGGG-GTCTGTCCTGGGG--GGTCTGTCCTGGGAGGGGTCTGTCCTGGGGGT-TCTGTCCTGGGGGGG-TCTGTCC s panTro5.chr12 127371452 81 + 137163284 CTGTCCCGGGGGAGTCTGTCCTGGGGAGGGTCT-TCCTGGG--GAGTCTGTCCTGGGGGCATCTGTCCTGGGGGGGGTCTGTCC i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235371 79 - 8369578 CTGTCCTGGGGA-GTCTGTCCTGGGG-GAGTCTGTCCTGGG--GGGTCTGTCCTGGAGGGGTCTGTCCTGGGAGGG-CCTGTCC i gorGor5.CYUI01015152v1 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e chlSab2.chr11 119250522 107 + 128539186 T e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e panPan2.chr12 125721896 0 + 135337776 C a score=11116.000000 s hg38.chr12_KI270834v1_alt 85951 34 + 119498 TGGGGGGG-TCTGTCCTG-GGGGGTTTGTCCTGGGA s panTro5.chr12 127371533 34 + 137163284 TGGGGGGGATCTGTCCCG-GGGGGACTGTCCTGGG- i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235450 33 - 8369578 TGGGGGGG-TCTGTCCTG-GGGGGGGTCTTCCTGG- i gorGor5.CYUI01015152v1 C 0 C 0 s chlSab2.chr11 119250415 34 + 128539186 TGGGGGGG-TCTGTCCTGAGGGGGTCTGTCCTGGG- i chlSab2.chr11 T 107 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e manLeu1.NW_012103587v1 592511 31 + 6255621 I e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e panPan2.chr12 125721896 0 + 135337776 C a score=9682.000000 s hg38.chr12_KI270834v1_alt 85985 11 + 119498 GGGGTCTGTCC s panTro5.chr12 127371567 11 + 137163284 GGGATCTGTCC i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235483 11 - 8369578 GGGGTCTGTCC i gorGor5.CYUI01015152v1 C 0 C 0 s chlSab2.chr11 119250449 11 + 128539186 GGGGTCTGTCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592542 11 + 6255621 GGGGTCTGTTC i manLeu1.NW_012103587v1 I 31 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e colAng1.NW_012116043v1 4627697 438 - 8658521 I e cerAty1.NW_012001186v1 12278505 27 + 20526591 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e panPan2.chr12 125721896 0 + 135337776 C a score=28386.000000 s hg38.chr12_KI270834v1_alt 85996 15 + 119498 TGGGGGGGTCTGTCC s panTro5.chr12 127371578 15 + 137163284 TGGGGGAGTCTGTCC i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235494 15 - 8369578 TGGGGGGATCTGTCC i gorGor5.CYUI01015152v1 C 0 C 0 s cerAty1.NW_012001186v1 12278532 15 + 20526591 TGGGGGGGTCTGTCC i cerAty1.NW_012001186v1 I 27 C 0 s chlSab2.chr11 119250460 15 + 128539186 TGGGGGGGTCTGTCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592553 15 + 6255621 TGGGAGGGTCTGTCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628135 15 - 8658521 TGGGGGGGTCTGTCC i colAng1.NW_012116043v1 I 438 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e canFam3.chr26 33170706 73 - 38964690 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e panPan2.chr12 125721896 0 + 135337776 C a score=-11263.000000 s hg38.chr12_KI270834v1_alt 86011 2 + 119498 T--G s panTro5.chr12 127371593 2 + 137163284 T--G i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235509 2 - 8369578 T--G i gorGor5.CYUI01015152v1 C 0 C 0 s cerAty1.NW_012001186v1 12278547 2 + 20526591 TG-- i cerAty1.NW_012001186v1 C 0 I 1 s chlSab2.chr11 119250475 1 + 128539186 T--- i chlSab2.chr11 C 0 I 2 s manLeu1.NW_012103587v1 592568 1 + 6255621 T--- i manLeu1.NW_012103587v1 C 0 I 2 s colAng1.NW_012116043v1 4628150 2 - 8658521 T-G- i colAng1.NW_012116043v1 C 0 C 0 s canFam3.chr26 33170779 2 - 38964690 --tg i canFam3.chr26 I 73 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e macNem1.NW_012010578v1 10654865 30 - 16319837 I e macFas5.chr11 128256235 2 + 137757926 I e rheMac8.chr11 124008121 30 + 133663169 I e nomLeu3.chr10 97893611 872 + 106955855 M e panPan2.chr12 125721896 0 + 135337776 C a score=919.000000 s hg38.chr12_KI270834v1_alt 86013 6 + 119498 GGGGGG--- s panTro5.chr12 127371595 6 + 137163284 GGGGCG--- i panTro5.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235511 5 - 8369578 GGGGG---- i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124008151 4 + 133663169 GAGG----- i rheMac8.chr11 I 30 C 0 s macFas5.chr11 128256237 4 + 137757926 GAGG----- i macFas5.chr11 I 2 C 0 s macNem1.NW_012010578v1 10654895 4 - 16319837 GAGG----- i macNem1.NW_012010578v1 I 30 C 0 s cerAty1.NW_012001186v1 12278550 4 + 20526591 GGGG----- i cerAty1.NW_012001186v1 I 1 C 0 s chlSab2.chr11 119250478 4 + 128539186 GGGG----- i chlSab2.chr11 I 2 C 0 s manLeu1.NW_012103587v1 592571 4 + 6255621 GGGG----- i manLeu1.NW_012103587v1 I 2 C 0 s colAng1.NW_012116043v1 4628152 4 - 8658521 GGGG----- i colAng1.NW_012116043v1 C 0 C 0 s canFam3.chr26 33170781 6 - 38964690 -ggg--ctg i canFam3.chr26 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e nomLeu3.chr10 97893611 872 + 106955855 M e panPan2.chr12 125721896 0 + 135337776 C a score=3600.000000 s hg38.chr12_KI270834v1_alt 86019 1 + 119498 G s rheMac8.chr11 124008155 1 + 133663169 G i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256241 1 + 137757926 G i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654899 1 - 16319837 G i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278554 1 + 20526591 G i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250482 1 + 128539186 G i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592575 1 + 6255621 G i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628156 1 - 8658521 G i colAng1.NW_012116043v1 C 0 C 0 s canFam3.chr26 33170787 1 - 38964690 g i canFam3.chr26 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e nomLeu3.chr10 97893611 872 + 106955855 M e gorGor5.CYUI01015152v1 8235516 0 - 8369578 C e panPan2.chr12 125721896 0 + 135337776 C e panTro5.chr12 127371601 0 + 137163284 C a score=58051.000000 s hg38.chr12_KI270834v1_alt 86020 18 + 119498 TCTGTCCTG---GGGGGGGGG s panTro5.chr12 127371601 16 + 137163284 TCTGTCCTG---GGAGGGG-- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721896 16 + 135337776 TCTGTCCTG---GGAGGGG-- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235516 18 - 8369578 TCTGTCCTG---GGGGGGGGG i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124008156 15 + 133663169 TCTGTCCTG---GGGGGG--- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256242 15 + 137757926 TCTGTCCTG---GGGGGG--- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654900 15 - 16319837 TCTGTCCTG---GGGGGG--- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278555 15 + 20526591 TCTGTCCTG---GGGGGG--- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250483 15 + 128539186 TCTGTCCTG---GGGGGG--- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592576 14 + 6255621 TCTGTCCT----GGGGGG--- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628157 15 - 8658521 TCTGTCCTG---GGGGGG--- i colAng1.NW_012116043v1 C 0 C 0 s canFam3.chr26 33170788 19 - 38964690 acagtcctgtgtggtgggt-- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e dasNov3.JH568189 852919 64 - 1116856 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e nomLeu3.chr10 97893611 872 + 106955855 M a score=42495.000000 s hg38.chr12_KI270834v1_alt 86038 7 + 119498 tctgtcc s panTro5.chr12 127371617 7 + 137163284 tctgtcc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721912 7 + 135337776 TCTGTCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235534 7 - 8369578 ACTGTCC i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124008171 7 + 133663169 tctgtcc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256257 7 + 137757926 tctgtcc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654915 7 - 16319837 tctgtcc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278570 7 + 20526591 tctgtcc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250498 7 + 128539186 tctgtcc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592590 7 + 6255621 tctgtcc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628172 7 - 8658521 tctgtcc i colAng1.NW_012116043v1 C 0 C 0 s canFam3.chr26 33170807 7 - 38964690 gctgtcc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 852983 7 - 1116856 tctttgc i dasNov3.JH568189 I 64 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e otoGar3.GL873618 4316856 77 + 7922563 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e nomLeu3.chr10 97893611 872 + 106955855 M a score=242864.000000 s hg38.chr12_KI270834v1_alt 86045 43 + 119498 t-gggggggtctgtcctgggcactataggatgtttagcagcatc s panTro5.chr12 127371624 43 + 137163284 t-gggggggtctgccctgggcactataggatgtttagcagcatc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721919 43 + 135337776 t-gggggggtctgccctgggcactataggatgtttagcagcatc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235541 44 - 8369578 TGGGgggggtctgtcctgggcactataggatgtttagcagcatc i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124008178 42 + 133663169 t--ggggggtctgtcctgggcactataggatgtttagcagcatc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256264 42 + 137757926 t--ggggggtctgtcctgggcactataggatgtttagcagcatc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654922 42 - 16319837 t--ggggggtctgtcctgggcactataggatgtttagcagcatc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278577 42 + 20526591 t--ggggggtctgtcctgggcactataggatgtttagcagcacc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250505 41 + 128539186 t---gggggtctgtcctgggcactataggatgtttagcagcgtc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592597 42 + 6255621 t--ggggggtctgtcatgggcactataggatgtttagcagcatc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628179 42 - 8658521 t--ggggggtctgtcctgggcactatagcatgtttagcagcatc i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4316933 38 + 7922563 --tggggg---tatcctgggtactgtag-atatgcagcagcacc i otoGar3.GL873618 I 77 C 0 s canFam3.chr26 33170814 33 - 38964690 -----------tgtctggtgcactacaggctgtgtagcagcatc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 852990 41 - 1116856 ---tgtggggttgtcctgtgtgttatactgtgttaagcagcatc i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e saiBol1.JH378194 473801 11 - 9212255 I e calJac3.chr9 114829233 9 + 124281992 I e nomLeu3.chr10 97893611 872 + 106955855 M a score=39563.000000 s hg38.chr12_KI270834v1_alt 86088 6 + 119498 ttcagc s panTro5.chr12 127371667 6 + 137163284 ttcagc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721962 6 + 135337776 ttcagc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235585 6 - 8369578 ttcagc i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124008220 6 + 133663169 tttggc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256306 6 + 137757926 tttggc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654964 6 - 16319837 tttggc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278619 6 + 20526591 tttggc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250546 6 + 128539186 ttcggc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592639 6 + 6255621 tttggc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628221 6 - 8658521 tttggc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114829242 6 + 124281992 TTtagc i calJac3.chr9 I 9 C 0 s saiBol1.JH378194 473812 6 - 9212255 TTTAGT i saiBol1.JH378194 I 11 C 0 s otoGar3.GL873618 4316971 5 + 7922563 -ctggc i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33170847 6 - 38964690 cctggc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853031 6 - 1116856 ctgggt i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e cebCap1.NW_016107484v1 2892837 57 + 4466143 I e nomLeu3.chr10 97893611 872 + 106955855 M a score=1749160.000000 s hg38.chr12_KI270834v1_alt 86094 198 + 119498 ctcaccccactggatgccagcag-----caccct----ccctccaagctgtgacatccagaaatgtctccagacagtaccaaacgtcccctgggggac-----------------aaaacctaccgcagttgagagcAGCGGGGCCAAAGTCACATGAAGATCACAAAATACAAAGAGA---AT--AAGGTTAATTTGATCATTTTGAGTCATATTGTGACCTTGCGCT s panTro5.chr12 127371673 198 + 137163284 ctcaccccactggatgccagtag-----caccct----ccctccaagctgtgacatccagaaatgcctccagacagtaccaaacgtcccctgggggac-----------------aaaacctaccccagttgagagcAGCGGGGCCAAAGTCACATGAAGATCACAAAATACAAAGAGA---AT--AAGGTTAATTTGATCATTCTGAGTCATATTGTGACCTTGCGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125721968 198 + 135337776 ctcaccccactggatgccagtag-----caccct----ccctccaagctgtgacatccagaaatgcctccagacagtaccaaacgtcccctgggggac-----------------aaaacctaccccagttgagagcAGCGGGGCCAAAGTCACATGAAGATCACAAAATACAAAGAGA---AT--AAGGTTAATTTGATCATTCTGAGTCATATTGTGACCTTGCGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235591 198 - 8369578 ctcaccccactggatgccagtag-----caccct----ccctccaagctgtgacatccagaaatgtctccagacagtaccaaacatcccctgggggat-----------------aaaacctaccccagttgagagcAGCGGGGCCAAAGTCACATGAAGATCACAAAATACAAAGAGA---AT--AAGGTTAATTTGATCATTTTGAGTCATATTGTGACCTTGCGCT i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124008226 197 + 133663169 ctcaccccactggatggcagtag-----caccct----ccctccaagctgtgacatccagaaatatctccagacattaccaaacatcccctgggggac------------------aaacctaccccagtggagagcAGCGGGGCCAAAGTCACAAGTAGATCACAAAATACAAAGAGA---AT--AAGGTTGATTTGATCATTTTGAGTCATATTGTGACATTGCTCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256312 197 + 137757926 ctcaccccactggatggcagtag-----caccct----ccctccaagctgtgacatccagaaatatctccagacattaccaaacatcccctgggggac------------------aaacctaccccagtggagagcAGCGGGGCCAAAGTCACAGGTGGATCACAAAATACAAAGAGA---AT--AAGGTTGATTTGATCATTTTGAGTCATATTGTGACCTTGCTCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10654970 197 - 16319837 ctcaccccactggatggcagtag-----caccct----ccctccaagctgtgacatccagaaatatctccagacattaccaaacatcccctgggggac------------------aaacctaccccagtggagagcAGCGGGGCCAAAGTCACAGGTAGATCACAAAATACAAAGAGA---AT--AAGGTTGATTTGATCATTTTGAGTCATATTGTGACCTTGCTCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278625 197 + 20526591 ctcaccccactggatggcagtag-----caccct----ccctccaagctgtgacatccagaaatatctccagacattaccaaacatcccctgggggac------------------aaacctaccccagtggagagcAGCGGGGCCAAAGTCACAGGTAGATCACAAAATACAAAGAGA---AT--AAGGTTGATTTGATCATTTTGAGTCATATTGTGACCTTGCTCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250552 197 + 128539186 ctcaccccactggatggcagtag-----caccct----ccctccaagctgtgacatccagaaatgtctccagacattaccaaacatcccctgggggac------------------aaacccaccccagtggagagcAGCGGGGCCAAAGTCACAGGTAGATCACAAAATACAAAGAGA---AT--AAGGTCGATTTGATCATTTTGAGTCATATTGTGACCTTGCTCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592645 197 + 6255621 ctcaccccactggatggcagtag-----caccct----ccctccaagctgtgacatccagaaatatctccagacattaccaaacatcccctgggggac------------------aaacctaccccagtggagagcAGCGGGGCCAAAGTCACAGGTAGATCACAAAATACAAAGAGA---AT--AAGGTTGATTTGATCATTTTGAGTCATATTGTGACCTTGCTCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628227 197 - 8658521 ctcaccccactggatggcagtag-----caccct----ccctccgagctgtgacatccagaaatgtctccagacattaccaaacatcccctgggggac------------------aaacctaccccagtggagagcAGCGGGGCCAAAGTCACAGCTAGATCACAAAATACAAAGAGA---AT--AAGGTTGATTTGATCATTTTGAGTCATATTGTGACCTTGCTCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114829248 197 + 124281992 ctcaccccactggatgccagcag-----caccct----ccctccaagctatgacatccagaaatgtctccagaaatgaccgaatgtctcctggggaca------------------aaacttgtcctaattgaaagcAGCGGGGCCAAAGTAACATGTAGATGACAAAATACACAGTGA---AT--AAGGTTGATTTGATCATTTGGAGTCATATTATGACCTTGCTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 473818 185 - 9212255 CTTACcccgctggatgctagcag-----gaccct----ccctccaagctgtgaca------------tccagaaattactgaatgtcccctggggaca------------------aaaCTTGTCCTAGTCAAAAGCAGCGGGGCCAAAGTGACATGTAGATTACAAAATACCAAGTGA---AT--AAGGCTGATTTGATCGTCTGGAGTCATATTGTGACCTTGCTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2892894 197 + 4466143 ctcaccccactggatgccagcag-----caccct----ccctccaagctgtgacatccagaaatgtctccagaaattaccgaatgtcccctggggaca------------------aaacttgtcctagttgaaagcAGCAGGGCCAAAGTAACATGTAGATCACAAAATACAAAGTGA---GT--AAGGCTGATTTGATAATTTGGAGTCATATTGTGACCTTGCTTT i cebCap1.NW_016107484v1 I 57 C 0 s otoGar3.GL873618 4316976 187 + 7922563 cttgccccactagatgccagtag-----catccttctccctcccaggttgtgatattcagaaat------------tgccaaatgtcccctgggagac-----------------aaaatcagccccagttgag---aactaGGTTGAAGTAACATGTAGAACACAAAACACAAAGAGA---AT--AAGGTTGATTTGATCCTTTTGAGTCATATTTTGATACTGTCTT i otoGar3.GL873618 C 0 I 213 s canFam3.chr26 33170853 214 - 38964690 ctctacctgctggatgccattga-----ccctac----ccctcc--gttttgacaactaaaaatgtttccagacattgccatatgtcctctgggggtgggagcgggggtggtggcaaaatcagccccagatgagaattcctgGG-TAAAGTAACATGTGGAACACACAATACAAAGAGAGTTAT--AAGG-TGACTTGATCATTTTGAGACATATTTTGACATTGCTTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853037 180 - 1116856 ctccacccactagaggccagtaggtccccacaca----cacaccaagttgtaacaacc--------------------caaaatgtcccgtgggggca------------------aaatcaaggccagttaagaaacactgGGTTAAAATAACACAGAGAGCACAAAATACAAAGAGA---ATTATAAGTAAGCCTCATTCATTTCAACCATATTTTGACATTG---- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e nomLeu3.chr10 97893611 872 + 106955855 M a score=446040.000000 s hg38.chr12_KI270834v1_alt 86292 54 + 119498 ATAGCTCGGAATTGTATTATTC----------------------AGAAAGCTTGGAACCAATAGAAATACTGTTAC s panTro5.chr12 127371871 54 + 137163284 ATAGCTCGGAATTGTATTATTC----------------------AGAAAGCTTGGAACCAATAGAAATACTGTTAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125722166 54 + 135337776 ATAGCTCGGAATTGTATTATTC----------------------AGAAAGCTTGGAACCAATAGAAATACTGTTAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235789 54 - 8369578 ATAGCTCGGAATTGTATTATTC----------------------AGAAAGCTGAGAACCAATAGAAATACTGTTAC i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124008423 54 + 133663169 ATAGCTCGGAATTATATTATTC----------------------AGAAAACTTAGAACCAATAGAAATACTGTTAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256509 54 + 137757926 ATAGCTCGGAATTATATTATTC----------------------AGAAAACTTAGAACCAATAGAAATACTGTTAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10655167 54 - 16319837 ATAGCTCGGAATTATATTATTC----------------------AGAAAACTTAGAACCAATAGAAATACTGTTAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278822 54 + 20526591 ATAGCTCGGAATTGTATTATTC----------------------AGAAAACTTAGAACCAATAGAAATACTGTTAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250749 54 + 128539186 ATAGCTCGGAATTGTATTATTC----------------------AGAAAACTTAGAACCAATAGAAATACTGTTAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592842 54 + 6255621 ATAGCTCGGAATTGTATTATTC----------------------AGAAAACTTAGAACCAATAGAAATACTGTTAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628424 54 - 8658521 ATAGCTCGGAATCGTATTATTC----------------------AGAAAACTTAGAACCAATAGAAATACTGTGAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114829445 52 + 124281992 ATAGCTCAG--TTTTATTATTC----------------------AGAAAACTTAGAACTAATAGAAATATTGTTAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 474003 52 - 9212255 ATAGCTCAG--TTTTATTATTC----------------------AGAAAACTTAGAACTAATAGAAATACTGTTAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2893091 52 + 4466143 ATAGCTCAG--TTTTATTATTC----------------------AGAAAACTTAGAACTAATAGAAATACTGTTAT i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4317376 76 + 7922563 ATAGCTCAGAATTTTATTGCTCAGAAACTTAGAACAAAAATCAAAGAAAATTTACAACCAATAGTAGACTCAATAT i otoGar3.GL873618 I 213 C 0 s canFam3.chr26 33171067 50 - 38964690 ATAACTCAGAATTTTGTTACTC----------------------AGAAAACTTGGAATCAGGTGT----CTGGGAC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853217 39 - 1116856 ------------TTTATTACTT----------------------AGAAAACAT--AACCAATAGTAAGAAAGTAT- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816204 379 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e nomLeu3.chr10 97893611 872 + 106955855 M a score=116352.000000 s hg38.chr12_KI270834v1_alt 86346 12 + 119498 TGTCTATGGTAT s panTro5.chr12 127371925 12 + 137163284 TGTCTATGGTAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125722220 12 + 135337776 TGTCTATGGTAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235843 12 - 8369578 TGTCTATGGTAT i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124008477 12 + 133663169 TGTCTATGATAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256563 12 + 137757926 TGTCTATGATAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10655221 12 - 16319837 TGTCTATGATAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278876 12 + 20526591 TGTCTATGATAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250803 12 + 128539186 TGTCTATGGTAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592896 12 + 6255621 TGTCTATGATAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628478 12 - 8658521 TGTCTATGATAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114829497 12 + 124281992 TGTCTATGGTAT i calJac3.chr9 C 0 I 311 s saiBol1.JH378194 474055 12 - 9212255 TGTCTATGGTAT i saiBol1.JH378194 C 0 I 318 s cebCap1.NW_016107484v1 2893143 12 + 4466143 TGTCTGTGGTAT i cebCap1.NW_016107484v1 C 0 I 347 s otoGar3.GL873618 4317452 12 + 7922563 TGTCTTCAGTGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124816583 12 + 151834684 TGTCTGGAAGAC i mm10.chr5 I 379 C 0 s canFam3.chr26 33171117 12 - 38964690 TGTTTTCAATGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853256 12 - 1116856 TGTCTTCAGTGT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e aotNan1.NW_018491581v1 1594029 2310 + 5364348 I e nomLeu3.chr10 97893611 872 + 106955855 M a score=1578852.000000 s hg38.chr12_KI270834v1_alt 86358 155 + 119498 ATTCTTCTGAGTTTTTGACTTAGAACCACAGTGTCATCTTACGGAGACCTCAGTA--CATGAAAGTAAAACCATTTGATAACTT--------GGGTGCT--G---------TGTCTTCTAATGGGACATGGAGTTTTTGCAGCAAACAGTCG--AAGAAGAAACT----------AAGA-----AGCCACGTG s panTro5.chr12 127371937 142 + 137163284 ATTCTTCTGAGTTTTTGACTTAGAACCACAGTGTCATCTT-------------TA--CATGAAAGTAAAACCATTTGATAACTT--------GGGTGCT--G---------TGTCTTCTGATGGGACATGGAGTTTTTGCAGCAAACAGTCG--AAGAAGAAACT----------AAGA-----AGCCACGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125722232 155 + 135337776 ATTCTTCTGAGTTTTTGACTTAGAACCACACTGTCATCTTACTGAGACCTCAGTA--CATGAAAGTAAAACCATTTGATAACTT--------GGGTGCT--G---------TGTCTTCTGATGGGACATGGAGTTTTTGCAGCAAACAGTCG--AAGAAGAAACT----------AAGA-----AGCCACGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8235855 155 - 8369578 ATTCTTCTGAGGTTTTGACTTAGAACCACAGTGTCATCTTACTGTGACCTCAGTA--CATGAAAGTAAAACCATTAGATAACTT--------GGGTGCT--G---------TGTCTTCTAATGGGACATGGAGTTTTTGCAGCGAACAGTTG--AAGAAGAAACT----------AAGA-----AGCGACGTG i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124008489 155 + 133663169 ATTCTTCTGAGTTTTTGACTTAGAACCACAGTGTCATCTTACTGTGATCTCAGTA--CATGAAAGTACAACCATCTGATAACTT--------AGGTGCT--G---------TGTCTTCTAATGGGACATAGAGTTTTTGCAGCAAACAGTTG--AAGAAGAAACT----------AAGA-----AGCCACGTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256575 155 + 137757926 ATTCTTCTGAGTTTTTGACTTAGAACCACAGTGTCATCTTACTGTGATCTCAGTA--CATGAAAGTACAACCATCTGATAACTT--------AGGTGCT--G---------TGTCTTCTAATGGGACATAGAGTTTTTGCAGCAAACAGTTG--AAGAAGAAACT----------AAGA-----AGCCACGTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10655233 155 - 16319837 ATTCTTCTGAGTTTTTGACTTAGAACCACAGTGTCATCTTACTGTGATCTCAGTA--CATGAAAGTACAACCATCTGATAACTT--------AGGTGCT--G---------TGTCTTCTAATGGGACATAGAGTTTTTGCAGCAAACAGTTG--AAGAAGAAACT----------AAGA-----AGCCACGTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12278888 155 + 20526591 ATTCTTCTGAGTTTTTGACTTAGAACCACAGTGTCATCTTACTGTGATCTCAGTA--CATGAAAGTACAACCATCTGATAACTT--------AGGTGCT--G---------TGTCTTCTAATGGGACATAGAGTTTTTGCAGCAAACAGTTG--AAGAAGAAACT----------AAGA-----AGCCACGTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250815 155 + 128539186 ATTCTTCTGAGTTTTTGACTTAGAACTATAGTGTCATCTTACTGTGATCTCAGTA--CATGAAAGTAAAACCATCTGATAACTT--------AGGTGCT--G---------TGTCTTCTAATGGGACATAGAGTTTTTGCAGCAAACAGTTG--AAGAAGAAACT----------AAGA-----AGCCATGTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 592908 155 + 6255621 ATTCTTCTGAGTTTTTGACTTAGAACCACAGTGCCATCTTACTGTGATCTCAGTA--CATGAAAGTACAACCATCTGATAACTT--------AGGTGCT--G---------TGTCTTCTAATGGGACATAGAGTTTTTGCAGCAAACAGTTG--AAGAAGAAACT----------AAGA-----AGCCACGTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628490 155 - 8658521 ATTCTTCTGAGTTTTTGACTTACAACCACAGTGTCATCTTACTGTGATCTCAGTA--CATGAAAGTAAAACCATCTGATAACTT--------AGGTGCT--G---------TGTCTTCTAATGGGACATAGAGTTTTTGCAACAAACAGTTG--AAGAAGAAACT----------AAGA-----AGCCACGTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114829820 159 + 124281992 ATTCTTCTGAGTTTTTGACTTAGAACCACAGTGCCATCTTACTGTGGCCTCAGTACACATGAAAGTAAAACCACATGATAACTT--------GGGTGCCTGG---------TGTCTTCTAAAGGGACATAGAGTTTTTGCAGCAAACAGTTG--AAGAAGAAACT----------AAGA-----AGCCACGTG i calJac3.chr9 I 311 C 0 s saiBol1.JH378194 474385 156 - 9212255 ATTCTTCTGAGTTTTTGACTTAGAACCACAATGTCATCTTACTGTGGCCTCAGTACACATGAAAGTAAAACCATATGATAACTT--------GGGTGCCGGG---------TATCTTCTAAAGGGACATAGAGTTTTTGCAGCAAACAGTT-----GAAGAAACT----------AAGA-----AGCCATGGG i saiBol1.JH378194 I 318 C 0 s cebCap1.NW_016107484v1 2893502 156 + 4466143 ATTCTTCTGCGTTTTTGACTTAGAACCACAGTGTCATCTTACTGTGGCCTCAGTACGCATGAAAGTAAAACCATATGATAACTT--------GGGTGTCAGG---------TATCTTCTAAAAGGACATAGAGTTTTTGCAGCAAACAGTT-----GAAGAAACT----------AAGA-----AGCCACGTG i cebCap1.NW_016107484v1 I 347 C 0 s aotNan1.NW_018491581v1 1596339 158 + 5364348 ATTCTTCTGAGTTTTTGACTTAGAACCACAGTGTCATCTTACTGTGGCCTCAGTACACATGAATGTAAAACCATATGATAACTT--------GAGT-TCGGG---------TGTCTTCTAAAGGGACATAGAGTGTTTGCAGCAAACGGTTG--AAGAAGAAACT----------AAGA-----AGCCACGTG i aotNan1.NW_018491581v1 I 2310 C 0 s otoGar3.GL873618 4317464 138 + 7922563 AGTCTTTTGAAGTTTTCACTTAGAGTCACAGAACCATCTTATGGTGGCTTCCATACGCATGAAAAGGAGACTGTCTGCTAACTT--------GGGTTTA------------------------------GGAACCTTTGTTACAAATAGTTG--AAAAGGAAACT----------AAGA-----GGCCATAAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124816595 168 + 151834684 ATTCTCTTGAATGTTTGACTAAAAGCCACTAAGCTGTCTCTGTGTGACTTCAGGA--CACACAACCCGAGATGTCCGCTATCTTACGGGGCAGGGTTTT--GTTTTGTTTTTTTTTTCTAACATGAGGCTGAGCTCTTACAGTCACAAGTGGCTCAGAAG----------------AGA-----AGCCACGTG i mm10.chr5 C 0 I 398 s canFam3.chr26 33171129 168 - 38964690 ATTCTTTTGACTTTTTGATTCAGAACCACAGTGTCATTTTGCTGTGACCTCAGCACACACAGAAATTAAGCTATCTGCCAACTT--------GGATGCA--G--GATATCTTTTTTTCCAATGGGAT-TAGTGCTTTTGCAGCCAATGGTGG--AAGAGGTGACT----------AAGAAAAAGAGCCATATC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853268 144 - 1116856 ATTCTTCTGAGTTATTGACTTTGAACCACAGTATCCTCTTACTATGACCTTAGTACACACAAAAATTAAACTATCTGCTAGCTT--------AGGTGTT--A---------------------GCAGATGGGGTGT-----------AGTTG--AAGGGGTAACTATAATGAGAAAAGA-----AGCCATGTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e nomLeu3.chr10 97893611 872 + 106955855 M a score=23760.000000 s hg38.chr12_KI270834v1_alt 86513 2 + 119498 TC s panTro5.chr12 127372079 2 + 137163284 TC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125722387 2 + 135337776 TC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236010 2 - 8369578 TC i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124008644 2 + 133663169 TC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256730 2 + 137757926 TC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10655388 2 - 16319837 TC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12279043 2 + 20526591 TC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250970 2 + 128539186 TC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 593063 2 + 6255621 TC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628645 2 - 8658521 TC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114829979 2 + 124281992 TC i calJac3.chr9 C 0 I 7 s saiBol1.JH378194 474541 2 - 9212255 TC i saiBol1.JH378194 C 0 I 7 s cebCap1.NW_016107484v1 2893658 2 + 4466143 TC i cebCap1.NW_016107484v1 C 0 I 38 s aotNan1.NW_018491581v1 1596497 2 + 5364348 TC i aotNan1.NW_018491581v1 C 0 I 33 s otoGar3.GL873618 4317602 2 + 7922563 CC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33171297 2 - 38964690 CC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853412 2 - 1116856 CC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816763 398 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e nomLeu3.chr10 97893611 872 + 106955855 M a score=32378.000000 s hg38.chr12_KI270834v1_alt 86515 5 + 119498 TCAAC s panTro5.chr12 127372081 5 + 137163284 TCAAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125722389 5 + 135337776 TCAAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236012 5 - 8369578 TCAAC i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124008646 5 + 133663169 TCAAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256732 5 + 137757926 TCAAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10655390 5 - 16319837 TCAAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12279045 5 + 20526591 TCGAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250972 5 + 128539186 TCAAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 593065 5 + 6255621 TCGAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628647 5 - 8658521 TCAAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114829988 5 + 124281992 TTAAC i calJac3.chr9 I 7 I 21 s saiBol1.JH378194 474550 5 - 9212255 TTAAT i saiBol1.JH378194 I 7 I 21 s otoGar3.GL873618 4317604 5 + 7922563 CCACT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33171299 5 - 38964690 TCAGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853414 5 - 1116856 TCAAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816763 398 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e aotNan1.NW_018491581v1 1596499 33 + 5364348 I e cebCap1.NW_016107484v1 2893660 38 + 4466143 I e nomLeu3.chr10 97893611 872 + 106955855 M a score=235992.000000 s hg38.chr12_KI270834v1_alt 86520 27 + 119498 -ATAGCATATAGAGGCTCTGAAAAGCAC s panTro5.chr12 127372086 27 + 137163284 -ATAGCATATAGAGGCTCCGAAAAGCAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125722394 27 + 135337776 -ATAGCATATAGAGGCTCCGAAAAGCAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236017 27 - 8369578 -ATAGCATATAGAGGCTCCGAAAAGCAC i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124008651 27 + 133663169 -ATAGCACATAGTGGCTCCGAAAAGCAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256737 27 + 137757926 -ATAGCACATAGTGGCTCCGAAAAGCAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10655395 27 - 16319837 -ATAGCACATAGTGGCTCCGAAAAGCAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12279050 27 + 20526591 -ATAGCACATAGTGGCTCCGAAAAGCAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119250977 27 + 128539186 -ATAGCATATAGTGGCTCCGAAAAGCAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 593070 27 + 6255621 -ATAGCACATAGTGGCTCCGAAAAGCAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628652 27 - 8658521 -ATAGCATATAGTGGCTCCGAAAAGCAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114830014 27 + 124281992 -ATGGCAGATGATGGCTCCAAAAAGCAC i calJac3.chr9 I 21 C 0 s saiBol1.JH378194 474576 27 - 9212255 -ATGGCAGAAGGTGGCTCCAAAAAGCAC i saiBol1.JH378194 I 21 C 0 s aotNan1.NW_018491581v1 1596532 27 + 5364348 -ATGGCAGATGGTGGCTCCAAAAAGCAC i aotNan1.NW_018491581v1 I 33 C 0 s otoGar3.GL873618 4317609 25 + 7922563 -ATAGCCCATGGTGACCCT--AGAGCAC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33171304 27 - 38964690 -AGGGCATATGGTGGCCCCAAAGAGTGG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853419 28 - 1116856 AGGGGCATGTGGTGGCCTCAAAGAATCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816763 398 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e cebCap1.NW_016107484v1 2893660 38 + 4466143 I e nomLeu3.chr10 97893611 872 + 106955855 M a score=330507.000000 s hg38.chr12_KI270834v1_alt 86547 35 + 119498 AGACACCATTAGA---GCAGTTTAGACATGTGGCCTGG s panTro5.chr12 127372113 35 + 137163284 AGACACCGTTAGA---GCAGTTTAGACATGTGGCCTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125722421 35 + 135337776 AGACACCGTTAGA---GCAGTTTAGACATGTGGCCTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236044 35 - 8369578 AGACGCCATTAGA---GCAGTTTAGACGTGTGGCCTGG i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124008678 35 + 133663169 AGACACCGTTAGA---GCAGTTTGGACACGTGGCCTGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256764 35 + 137757926 AGACACCGTTAGA---GCAGTTTGGACACGTGGCCTGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10655422 35 - 16319837 AGACACCGTTAGA---GCAGTTTGGACACGTGGCCTGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12279077 35 + 20526591 AGACACCATTAGA---GCAGTTTGGACACGTGGCCTGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119251004 35 + 128539186 AGACACCGTTAGA---GTAGTTTGGACATGTGGCCTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 593097 35 + 6255621 AGACACCATTAGA---GCAGTTTGGACACGTGGCCTGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628679 35 - 8658521 AGACACCATTAGA---GCAGCTTGGACATGTGGCCTGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114830041 35 + 124281992 AGACGCCATTAGA---GCGGTTTGGACATGTGGCCTGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 474603 35 - 9212255 AGACACCTTTAGA---GAGGTTTGGACATGTGGCCTGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2893698 35 + 4466143 AGACACCATTAGA---GCGGTTTGGACATGTGGCCTGG i cebCap1.NW_016107484v1 I 38 C 0 s aotNan1.NW_018491581v1 1596559 35 + 5364348 AGACACCATTAGA---GCGGTTTGGACACGTGGCCTGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4317634 30 + 7922563 AGACACC-----A---GCCATGTGGATACACGCCCTGC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33171331 38 - 38964690 GAACATCATTAGAGATGTGGTGTGGACACAAGCCCAAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853447 22 - 1116856 GAACATCACTAGA---AAA---TAGAGG---------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816763 398 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I e nomLeu3.chr10 97893611 872 + 106955855 M a score=484692.000000 s hg38.chr12_KI270834v1_alt 86582 50 + 119498 TTTGAGGCCATGGGA-TCGCGGCCCCACCACGGTCCTTTTCCCCATCTTTT s panTro5.chr12 127372148 50 + 137163284 TTTGAGGCCATGGGA-TCGCGGCCCCACCACGGTCCTTTTCCCCATCTTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125722456 50 + 135337776 TTTGAGGCCATGGGA-TCGCGGCCCCACCACGGTCCTTTTCCCCATCTTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236079 50 - 8369578 TTTGAGGCCATGGGA-TCGCGGCCCCACCACGGTCCTTTTCCCCATCTTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97894483 50 + 106955855 TTTGAGGCCATGGGATTCGCGGCCCCACCACCGTCCTTTT-TCCATCTTTT i nomLeu3.chr10 M 872 C 0 s rheMac8.chr11 124008713 50 + 133663169 TTTGAGGCCATTGTA-TCACGGCCCCACCATGGTCCTTTTCCCCACCTTTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256799 50 + 137757926 TTTGAGGCCATTGTA-TCACGGCCCCACCATGGTCCTTTTCCCCACCTTTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10655457 50 - 16319837 TTTGAGGCCATTGTA-TCACGGCCCCACCATGGTCCTTTTCCCCACCTTTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12279112 50 + 20526591 TTTGAGGCCATTGTA-TCACGGCCCCACCATGGTCCTTTTCCCCACCTTTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119251039 50 + 128539186 TTTGAGGCCATTGTA-TCGTGGCCCCACCGTGGTCCTTTTCCCCACCTTTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 593132 50 + 6255621 TTTGAGGCCATTGTA-TCACGGCCCCACCATGGTCCTTTTCCCCACCTTTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628714 50 - 8658521 TTTGAGGCCATTGTA-TCGCAGCCCCACCGTGGTCCTTTTCCCCACCTTTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114830076 49 + 124281992 TTGGAGGCCATTGGA-TCTCGGCCCCACCATGGTCCTTGT-CCCATCTTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 474638 50 - 9212255 TTGGAGGCCATTGGA-TCCCAGCCCCACCATGGTCCTTGTCCCCATCTTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2893733 50 + 4466143 TTGGAGGCCGTTGGA-TCCCGGCCCCACCGTGGTCCTTGTCCCCATCTTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1596594 50 + 5364348 TTGGAGGTCATTGGA-TCCCGGCCCCACTATGGTCCTTGTCCCCATCTTTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4317664 40 + 7922563 --------CCTTG-A-GCCCTGCCCCAC-ACAGTCCTTTTCCCCAACGTTG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33171369 50 - 38964690 GGTGAGGCTCTTTTA-TCCCTGACCTACTATAGCACCTTTCCCCACCGTTC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853469 36 - 1116856 CCCGAGACTCCTTGG-TC----CCTCCCCAT----------CCCACCGTGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e mm10.chr5 124816763 398 + 151834684 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I a score=74193.000000 s hg38.chr12_KI270834v1_alt 86632 6 + 119498 --TGCAAA s panTro5.chr12 127372198 6 + 137163284 --TGCAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125722506 6 + 135337776 --TGCAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236129 6 - 8369578 --TGCAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97894533 6 + 106955855 --TGCAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124008763 6 + 133663169 --TGCAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256849 6 + 137757926 --TGCAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10655507 6 - 16319837 --TGCAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12279162 6 + 20526591 --TGCAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119251089 6 + 128539186 --TGCAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 593182 6 + 6255621 --TGCAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628764 6 - 8658521 --TGCAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114830125 6 + 124281992 --TGCAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 474688 6 - 9212255 --TGCAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2893783 6 + 4466143 --TGCAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1596644 6 + 5364348 --TGCAAA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4317704 6 + 7922563 --TGCTAA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124817161 6 + 151834684 --TGCTCA i mm10.chr5 I 398 C 0 s canFam3.chr26 33171419 6 - 38964690 --TGTGAC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853505 6 - 1116856 TGTGCA-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I e proCoq1.NW_012154285v1 6731128 841 - 9870158 I a score=14483.000000 s hg38.chr12_KI270834v1_alt 86638 1 + 119498 T s panTro5.chr12 127372204 1 + 137163284 T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125722512 1 + 135337776 T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236135 1 - 8369578 T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97894539 1 + 106955855 C i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124008769 1 + 133663169 T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256855 1 + 137757926 T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10655513 1 - 16319837 T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12279168 1 + 20526591 T i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119251095 1 + 128539186 T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 593188 1 + 6255621 T i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628770 1 - 8658521 T i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114830131 1 + 124281992 T i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 474694 1 - 9212255 T i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2893789 1 + 4466143 T i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1596650 1 + 5364348 T i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6731969 1 - 9870158 T i proCoq1.NW_012154285v1 I 841 C 0 s otoGar3.GL873618 4317710 1 + 7922563 T i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124817167 1 + 151834684 C i mm10.chr5 C 0 C 0 s canFam3.chr26 33171425 1 - 38964690 T i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853511 1 - 1116856 T i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9478296 836 - 31815103 I a score=4581939.000000 s hg38.chr12_KI270834v1_alt 86639 237 + 119498 TGTCTTCACTTAGGTGGCCAGGCTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATATGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAAGAAGCCGAGATCATGGAGAGGCGGCTGATTGCCGCAGACAAACTCATCTCGGGTCTGGGGTCAGAAAACATCAGGTTAGC s panTro5.chr12 127372205 237 + 137163284 TGTCTTCACTTAGGTGGCCAGGCTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATATGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAAGAAGCCGAGATCATGGAGAGGCGGCTGATTGCTGCAGACAAACTCATCTCGGGTCTGGGGTCAGAAAACATCAGGTCAGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125722513 237 + 135337776 TGTCTTCACTTAGGTGGCCAGGCTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATATGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAAGAAGCCGAGATCATGGAGAGGCGGCTGATTGCTGCAGACAAACTCATCTCGGGTCTGGGGTCAGAAAACATCAGGTCAGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236136 237 - 8369578 TGTCTTCACTTAGGTGGCCAGGCTGGAGCGTAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATATGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAAGAAGCCGAGATCATGGAGAGGCGGCTGACTGCTGCAGACAAACTCATCTCGGGTCTGGGGTCAGAAAACATCAGGTCAGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97894540 237 + 106955855 TGTCTTCACTTAGGTGGCCAGGCTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGATGGAAACATTGGGTGCCAAATATGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAAGAAGCCGAGATCATGGAGAGGCGGCTGATTGCTGCAGACAAACTCATCTCGGGTCTGGGGTTGGAAAACATCAGGTCAGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124008770 237 + 133663169 TGTCTTTACTTAGGTGGCCAGGTTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATACGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAGGAAGCCGAGATCATGGAGAGGCGGCTGATTGCTGCAGACAAACTCATCTCGGGTCTGGGGTCGGAAAACATCAGGTCAGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128256856 237 + 137757926 TGTCTTTACTTAGGTGGCCAGGTTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATACGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAGGAAGCCGAGATCATGGAGAGGCGGCTGATTGCTGCAGACAAACTCATCTCGGGTCTGGGGTCGGAAAACATCAGGTCAGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10655514 237 - 16319837 TGTCTTTACTTAGGTGGCCAGGTTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATACGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAGGAAGCCGAGATCATGGAGAGGCGGCTGATTGCTGCAGACAAACTCATCTCGGGTCTGGGGTCGGAAAACATCAGGTCAGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12279169 237 + 20526591 TGTCTTTACTTAGGTGGCCAGGTTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATACGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAGGAAGCCGAGATCATGGAGAGGCGGCTGATTGCTGCAGACAAACTCATCTCGGGTCTGGGGTCGGAAAACATCAGGTCAGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119251096 237 + 128539186 TGTCTTTACTTAGGTGGCCAGGTTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATACGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAAGAAGCTGAGATCATGGAGAGGCGGCTGATTGCTGCAGACAAACTCATCTCGGGTCTGGGGTCAGAAAACATCAGGTCAGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 593189 237 + 6255621 TGTCTTTACTTAGGTGGCCAGGTTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATACGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAGGAAGCCGAGATCATGGAGAGGCGGCTGATTGCTGCAGACAAACTCATCTCGGGTCTGGGGTCGGAAAACATCAGGTCAGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4628771 237 - 8658521 TGTCTTTACTTAGGTGGCCAGGTTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATACGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAAGAAGCCGAGATCATGGAGAGGCGGCTGATTGCTGCAGACAAACTCATCTCGGGTCTGGGGTCGGAAAACATCAGGTCAGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114830132 237 + 124281992 TGTCTTCACTTAGGTGGCCAGGCTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAACGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACGCTGGGTGCCACATACGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAAGAAGCCGAGATCATGGAGAGGCGGCTGATCGCTGCCGACAAACTCATCTCGGGCCTGGGGTCGGAAAACGTCAGGTCAGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 474695 237 - 9212255 GGTCTTCACTTAGGTGGCCAGGCTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACGTTGGGTGCCAAATACGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAAGAAGCCGAGATCATGGAGAGGCGGCTGATTGCTGCCGACAAACTCATCTCGGGCCTGGGGTCGGAAAACGTCAGGTCAGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2893790 237 + 4466143 GGTCTTCACTTAGGTGGCCAGGCTGGAGCGGAATTTTTACCTCACTAAACGGGAGCTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACGTTGGGTGCCAAATACGAGGCCGCCATACTGGAGAAGCAGAAGCTGCAGGAAGAAGCCGAGATCATGGAGAGGCGGCTGATTGCTGCCGACAAACTCATCTCGGGCCTGGGGTCAGAAAACATCAGGTCAGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1596651 237 + 5364348 CGTCTTCACTTAGGTGGCCAGGCTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACGTTGGGTGCCAAATATGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAAGAAGCCGAGATCATGGAGAGGCGGCTGATTGCTGCCGACAAACTCATCTCGGGCCTGGGGTCGGAAAACGTCAGGTCAGC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9479132 237 - 31815103 TGTCTTCACGCAGGTGGCCAGGCTGGAGCGGAATTTCTTCCTGACGAAGCGGGAGCTGGAGCGGATCCAGAACGAGCTGGCGGCCATCCAGAGGGAGCTGGAGGCGCTGGGCGCCAAGTACGAGGCGGCCATCCTGGAGAAGCAGAAGCTGCAGGAGGAAGCCGAGATCATGGAGAGGCGGCTGATCGCCGCGGACAAGCTCATCTCGGGCCTCGGGTCTGAGAACACCAGGTCAGC i micMur3.chr21 I 836 C 0 s proCoq1.NW_012154285v1 6731970 237 - 9870158 TGTCTTCACTCAGGTGGCCAGGCTGGAGCGGAATTTTTTCCTGACGAAGCGGGAACTAGAACGGATCCAGAACGAGCTGGCGGCGATCCAGAAGGAACTGGAAGCTTTGGGTGCCAAGTACGAGGCGGCCATCCTGGAAAAGCAAAAGCTGCAGGAGGAAGCCGAGATCATGGAGCGGCGGCTGATCGCCGCGGACAAGCTCATCTCAGGCCTGGGCTCGGAAAACGTCAGGTCAGC i proCoq1.NW_012154285v1 C 0 I 1001 s otoGar3.GL873618 4317711 237 + 7922563 TGTCTTCATTTAGGTGGCCAGGCTAGAGCGGAATTTTTACCTAACTAAACGGGAACTAGAAAGGATCCAGAATGAGTTGGCAACTATCCAGAAAGAACTGGAAGCTTTGGGTGCCAAATATGAGGCAGCCATACTGGAAAAGCAAAAGCTGCAGGAAGAAGCCGAAATCATGGAGAGGCGGCTGATTGCAGCTGACAAGCTCATCTCTGGTCTGGGATCGGAAAACGTCAGGTCAGC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124817168 237 + 151834684 TGTCTTCACACAGGTGGCCAGGCTGGAGCGGAATTTCTTCCTAACCAAACGGGAGCTAGAGAGGATCCAGAACGAGCTGGCAGCGATCCAAAAGGAACTGGAGGCTCTGGGGGCCAAGTATGAGGCCGCCATCCTGGAGAAGCAGAAACTGCAGGAGGAGGCAGAGATTATGGAGAGGCGGTTGATCGCAGCGGACAAGCTCATCTCTGGGCTGGGCTCAGAAAACGTCAGGTGAGG i mm10.chr5 C 0 C 0 s canFam3.chr26 33171426 237 - 38964690 TGTCTCCACTTAGGTGGCCAGGCTGGAGCGGAACTTTTATCTCACTAAACGTGAGCTCGAAAGGATCCAGAATGAGTTGGCAGCCATCCAGAGGGAACTGGAGGCTCTGGGGGCCAAATACGAGGCAGCCATTCTGGAAAAGCAGAAGCTGCAGGAAGAAGCCGATATCATGGAGAGGCGGCTGATCGCTGCGGACAAGCTCATCTCTGGGCTGGGCTCTGAGAACATCAGGTCAGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853512 237 - 1116856 TGTCTGTACTCAGGTGGCCAGGCTGGAGCGGAATTTTTACCTCACTAAACGGGAACTAGAAAGGATCCAGAATGAGTTAGCAGCAATCCAGAAAGAACTGGAAGCTTTGGGTGCCAAATATGAGGCGGCCATTTTGGAGAAGCAGAAGCTGCAGGAAGAAGCGGAAATCATGGAGAGACGACTGATCGCGGCTGACAAGCTCATCTCGGGTCTAGGCTCTGAGAACATCAGGTTGGT i dasNov3.JH568189 C 0 C 0 a score=21210.000000 s hg38.chr12_KI270834v1_alt 86876 2 + 119498 GC- s panTro5.chr12 127372442 2 + 137163284 GC- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125722750 2 + 135337776 GC- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236373 2 - 8369578 GC- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97894777 2 + 106955855 GC- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124009007 2 + 133663169 GC- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128257093 2 + 137757926 GC- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10655751 2 - 16319837 GC- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12279406 2 + 20526591 GC- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119251333 2 + 128539186 GT- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 593426 2 + 6255621 GC- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4629008 2 - 8658521 GT- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114830369 2 + 124281992 GC- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 474932 2 - 9212255 GC- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2894027 2 + 4466143 GC- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1596888 2 + 5364348 GC- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9479369 2 - 31815103 GC- i micMur3.chr21 C 0 I 936 s otoGar3.GL873618 4317948 2 + 7922563 GT- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124817405 2 + 151834684 GC- i mm10.chr5 C 0 I 93 s canFam3.chr26 33171663 2 - 38964690 AC- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853749 2 - 1116856 -CT i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6732207 1001 - 9870158 I a score=860195.000000 s hg38.chr12_KI270834v1_alt 86878 74 + 119498 TGCTCACGAGCCCACCTGTT------------------GCGGTT-----------TGTAAACGGACGTCACCCACAGAGTTTCTCGCCATGTTGATTCTTTAT s panTro5.chr12 127372444 74 + 137163284 TGCTCACGAGCCCACCTGTT------------------GCGATT-----------TGTAAACGGACGTCACCCACAGAGTTTCTCGCCATGTTGATTCTTTAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125722752 74 + 135337776 TGCTCACGAGCCCACCTGTT------------------GCGATT-----------TGTAAACGGACGTCACCCACAGAGTTTCTCGCCATGTTGATTCTTTAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236375 74 - 8369578 TGCTCACGAGCCCACCTGTT------------------GCGGTT-----------TGTAAACGGACGTCACCCACAGAGTTTCTCGCCATGTTGATTCTTTAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97894779 74 + 106955855 TGCTCACGAGCCTGCCTATT------------------GCGGTT-----------TGTAAACGGATGTCACCCACAGAGTTTCTCGCCATGTTGATTCTTTAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124009009 74 + 133663169 GGCTCACGAGCCCACCTGTT------------------GTCGTT-----------TGTAAATGGACGTCACCCACAGAGTTTCTCGCCATGTTGATTCTTTAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128257095 74 + 137757926 GGCTCACGAGCCCATCTGTT------------------GTCGTT-----------TGTAAATGGACGTCACCCACAGAGTTTCTCGCCATGTTGATTCTTTAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10655753 74 - 16319837 GGCTCACGAGCCCACCTGTT------------------GTCGTT-----------TGTAAATGGACGTCACCCACAGAGTTTCTCGCCATGTTGATTCTTTAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12279408 74 + 20526591 GGCTCACGAGCCCACCTGTT------------------GTCGTT-----------TGTAAATGGACGTCACCCACAGAGTTTCTCGCCATGTTGATTCTTTAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119251335 74 + 128539186 GGCTCACGAGCCCACCTGTT------------------GTCGTT-----------TGTAAATGGACGTCACCCACAGAGTTTCTTGCCATGTTGATTCTTTAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 593428 74 + 6255621 GGCTCACGAGCCCACCTGTT------------------GTCGTT-----------TGTAAATGGACGTCACCCACAGAGTTTCTCGCCATGTTGATTCTTTAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4629010 74 - 8658521 GGCTCACGAGCCCACCTGTT------------------GTCGTT-----------TGTAAATGGACGTCACCCACAGAGTTTCTCGCCATGTTGATTCTTTAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114830371 73 + 124281992 AGCTCATGAG-CCCCCTGTT------------------GTGATC-----------TGTAAATGGACGTCACCCACAGAGTTTCTCGCCATGTTGATTCTTTAT i calJac3.chr9 C 0 I 319 s saiBol1.JH378194 474934 74 - 9212255 GGCTCACGAGCCCCCCTGTT------------------GTGGTT-----------TGTAAATGGACGTCACCCACAGAGTTTCTCGCCATGTTGATTTTTTAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2894029 74 + 4466143 GGCTCACGAGCCCCCCTGTT------------------GTGGTT-----------TGTAAATGGACGTCACCCACAGAGTTTCTCGCCATGTTGATTCTTTAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1596890 74 + 5364348 GGCTCACAAGCCCTCCTGTT------------------GTGGTT-----------TGCAAATGGATGTCACCCACAGAGTTTCTCGCCATGTTGATTCTTTAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4317950 74 + 7922563 GGTTCACGAGCCTGCCTTTT------------------ATGGGT-----------TATAAATGGATGTCCCTGGCAGAATTTCTTGCTATGTTCAGTCTTTAT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33171665 88 - 38964690 --CTAAGGGACCCCTCCAATGAGAGCTCCGAGCCAGAAGGGGTC-----------TGTGAGTGGACATCAGCAACCAACTTCCTTGCCATGTCG--TCTCAAC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853751 87 - 1116856 GGGTAATGAGCCCAAATGAT----------------AAGTGGTTCTGAGGGAAACTTTGGTTTCACATCATAAGTGAGATTTCTTGCCATGTAGGTTCTTTAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9479371 936 - 31815103 I e mm10.chr5 124817407 93 + 151834684 I e proCoq1.NW_012154285v1 6732207 1001 - 9870158 I a score=2033607.000000 s hg38.chr12_KI270834v1_alt 86952 188 + 119498 CTCACGTTGTGTTTTT-ATGTGAAAACCATGTGACCAGG-TCTTA-TGTTCCTATTATCATGTTTATGGCAGCTAATGGCTATTTTATAGGCTCTTGTTTGTATTAGGCACTGAGTGTTATTTATTAATTA--CTAAGGGTCAAGGAGGC---AGT-GCAGCTGTGGAGAC--GGGGGAATCCATACCATTTAGCAGGG s panTro5.chr12 127372518 188 + 137163284 CTCATGTTGTGTTTTT-ATGTGAAAACCATGTGACCAGG-TCTTA-TGTTCCTATTATCATGTTTATGGCAGCTAATGGCTATTTTATAGGCTCTTGTTTGTATTAGGCACTGAGTGTTATTTATTAATTA--CTAAGGGTCAAGGAGGC---AGT-GCAGCTGTGGAGAC--GGGGGAATCCATACCATTTAGCAGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125722826 188 + 135337776 CTCATGTTGTGTTTTT-ATGTGAAAACCATGTGACCAGG-TCTTA-TGTTCCTATTATCATGTTTATGGCAGCTAATGGCTATTTTATAGGCTCTTGTTTGTATTAGGCACTGAGTGTTATTTATTAATTA--CTAAGGGTCAAGGAGGC---AGT-GCAGCTGTGGAGAC--GGGGGAATCCATACCATTTAGCAGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236449 186 - 8369578 CTCACGTTGTGTTTTA-ATGTGAAAACCATGTGA-CAGG-TCTCA-TGTTCCTATTATCATGTTTATGGCAGCTAATGGCTATTTTATAGGCTCTTGTTTGTATTAGGCACTGAGTGTTATGTATTAATTA--CTAAGGGTCAAGGAGGC---AGT-GCAGCTGTGGAGAC---GGGAAATCCATACCATTTAGCAGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97894853 187 + 106955855 CTCACATTGTGTTTTT-ATGTGAAAACCAT-TGACCAGG-TCTTA-TATTCCTATTATCATGTTCATGGCAGCTAATGGCTATTTTATAGACTCTTGTTTGTATTAGGCACTGAGTGTTATTTATTAGTTA--CTAAGGGTCAAGGAGGC---AGT-GCAGCTGTGGAGAT--GGGGGAATCCATACCATTTAGCAGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124009083 185 + 133663169 CTCACGTTGTGTTTTT-ATGTGAAAACCATGTGACCAGG-TCTTA-TTTTCCTATTATCATGTTTATGGCAGCTAATGGCTATTTTATAGACTATTGTTTTTATTAGGCACTGAGTGTTATTTATTAATTA--CTAAGGGTCAAGGAGGC---AGT-GCAGCTGTGGAGAT--GGAGAAATCCATAGCATTTAGCA--- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128257169 185 + 137757926 CTCACGTTGTGTTTTT-ATGTGAAAACCATGTGACCAGG-TCTTA-TTTTCCTATTATCATGTTTATGGCAGCTAATGGCTATTTTATAGACTATTGTTTTTATTAGGCACTGAGTGTTATTTATTAATTA--CTAAGGGTCAAGGAGGC---AGT-GCAGCTGTGGAGAT--GGAGAAATCCATAGCATTTAGCA--- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10655827 185 - 16319837 CTCACGTTGTGTTTTT-ATGTGAAAACCATGTGACCAGG-TCTTA-TTTTCCTATTATCATGTTTATGGCAGCTAATGGCTATTTTATAGACTATTGTTTTTATTAGGCACTGAGTGTTATTTATTAATTA--CTAAGGGTCAAGGAGGC---AGT-GCAGCTGTGGAGAT--GGAGAAATCCATAGCATTTAGCA--- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12279482 185 + 20526591 CTCACGTTGTGTTTTT-ATGTGAAAACCATGTGACCAGG-TCTTA-TTTTCCTATTACCATGTTTATGGCAGCTAATGGCTATTTTATAGACTATTGTTTTTATTAGGCACTGAGTGTTATTTATTAATTA--CTAAGGGTCAAGGAGGC---AGT-GCAGCTGTGGAGAT--GGAGCAATCCATAGCATTTAGCA--- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119251409 185 + 128539186 CTCACGTTGTGTTTTT-ATGTGAAAACCATGTGACCAGG-TCTTA-TTTTCCTATTATCATGTTTATGGCAGCTAATGGCTATTTTATAGGCTATTGTTTTTATTAGGCACTGAGTGTTATTTATTAATTA--CTAAGGGTCAAGGAGAC---AGT-GCAGCTGTGGAGAC--GGAGAAATCCATAGCATTTAGCA--- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 593502 185 + 6255621 CTCACGTTGTGTTTTT-ATGTGAAAACCATGTGACCAGG-TCTTA-TTTTCCTATTACCATGTTTATGGCAGCTAATGGCTATTTTATAGACTATTGTTTTTATTAGGCACTGAGTGTTATTTATTAATTA--CTAAGGGTCAAGGAGGC---AGT-GCAGCTGTGGAGAT--GGAGAAATCCATAGCATTTAGCA--- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4629084 186 - 8658521 CTCACATTGTGTTTAT-ATGTGAAAACCACGTGACCAGG-TCTTACTTTTCCTATTCTCATGTTTATGGCAGCTAATGGCTATTTTATAGACTATTGTTTTTATTAGGCACTGAGTGTTATTTATTAATTA--CTAAGGGTCAAGGAGGC---AGT-GCCGCTGTGGAGAC--GGAGAAATCTGTAGCATTTAGCA--- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114830763 191 + 124281992 cTCATGTTGTGTTTTTAATGTGGAAACCATGTGACCAGG-TCTTA-TGTCACTATTATCATGTTTATGGTGGCTAATGGCTATTTTATAGACTCTTGCTTTTATTAGGTACTGAGTGTCATTTACTAATTA--CCCGGGGTTGAGGAGGC---AGT-GCAGCTGTGGAGACAGGGAGAAATGCATAGCATTGAGCAAGG i calJac3.chr9 I 319 C 0 s saiBol1.JH378194 475008 191 - 9212255 CTCATGTTGTGTTTTTAATGTGAAAACCATGTGACCAGG-TCTTA-TTTCATTATTATCATGTTTATGGTGGCTAATGGCTATTTTATAGACTCTTGCTTTCATTAGGTACTGAGTGTTATTTACTAATTA--CTCTGGGTTGAGGAGGC---AGT-GCAGCTGTGGAGCCAGGGAGACATCCGTAGCATTCAGCGAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2894103 191 + 4466143 CTCATGTTGTGTTTTTAATGTGAAAACCATGTGACCAGG-TCTTA-TTTCACTATTATCATGTTTATGGCGGCTAATGGCTATTTTATAGAGTCTTGCTTTTATTAGGTACTGAGTGTTATTTACTAATTA--CTCGGGGTTGAGGTGGG---AGT-GCAGCTGTGGAGATAGGGAGACATCCATAGCATTCAGCAAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1596964 191 + 5364348 CTCATGTTGTGTTTTTAATGTGAAAACCATGTGACCAGG-TCTTA-TTTCACTATTACCATGTTTATGGCGGCTAATGGCTATTTTATAGACTCTCGCTTTTATTAGGTACTGAGTGTTATTTACTAATTA--CTCCGGGTTGAGGAGGC---AGT-GCAGCTGTGGAGACAGGGAGAAATCCATAGCATTCAGCAAGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4318024 193 + 7922563 TGCACATTGCATTTTC-AT-TGAAAGGCACGTGACAAGT-TCTTG-TTTTCTTATTACCGTGTTGATGGTGGCTAATGGACATTGTATAGACTCT-GTTTTTATTAGGTACTGAGTGTTACTTATTAAGTGACCTCTAGGGTTGGGAGGCAGAAGT-ATAGCAGTGGAGACAGGGAGAAACCTGAAGCATTGAGCAGAT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33171753 170 - 38964690 TCCACGTTGCAGTTTT-ACCTGAAAACAGTGTGGGAAAATTCTGA-TTTTGC--TTAACACATTCAGGGCAGCTAAT-ACCATTTTACACATTCTGTGGTTTATTAGA-----------------TAATTA--TTAAGGGTTAAGGAGGC---AGT-GCTGCTGTGGAGACAGGGAGGCACCAGTGTC-TCTGGTAAGG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 853838 174 - 1116856 TCCATGTTGCATGTTT-ATCTGAAAATCCAATGAAAAGT-TC----TTTTACTGTTACCATGTTCAATGTGGCTAATTTCCATTTTATAGATTCT-GTCTTTATTAGGTAT----TGTTATTTATTAAGTA--ATTA----TTAGAAGGC---AGTGGCAACTGTGGATAA--AGACAAACCAATGCC-TCTGGCAG-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9479371 936 - 31815103 I e mm10.chr5 124817407 93 + 151834684 I e proCoq1.NW_012154285v1 6732207 1001 - 9870158 I a score=588904.000000 s hg38.chr12_KI270834v1_alt 87140 52 + 119498 TGCTCTAGGTTTGGGAAGTGTTCACTTCTTGGTGACCTCTAACCCCTGGGTC s panTro5.chr12 127372706 52 + 137163284 TGCTCTAGGTTTGGGAAGTGTTCACTTCTTGGTGACCTCTAACCCCTGGGTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125723014 52 + 135337776 TGCTCTAGGTTTGGGAAGTGTTCACTTCTTGGTGACCTCTAACCCCTGGGTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236635 52 - 8369578 TGCCCTAGGTTTGGGAAGTGTTCACTTCTTGGTGACCTCTAACCCCTGGGTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97895040 52 + 106955855 TGCTCTAGGTTTGGGAAGGGTTCACTTCTTGGTTACCTCTAACCCCTGGGTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124009268 46 + 133663169 ------AGGTTTAGGGAGTGTTCACTTCTTGGTGACCTCTAACCCCTGGGTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128257354 46 + 137757926 ------AGGTTTAGGGAGTGTTCACTTCTTGGTGACCTCTAACCCCTGGGTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10656012 46 - 16319837 ------AGGTTTAGGGAGTGTTCACTTCTTGGTGACCTCTAACCCCTGGGTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12279667 46 + 20526591 ------AGGTTTAGGGAGTGTTCACTTCTTGGTGACCTCTAACCCCTGGGTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119251594 46 + 128539186 ------AGGTTTAGGGAGTGTTCCCTTCTTGGTGACCTCTAACCCCTGGCTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 593687 46 + 6255621 ------AGGTTTAGGGAGTGTTCACTTCTTGGTGACCTCTAACCCCTGGGTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4629270 46 - 8658521 ------AGGTTTAGGGAGTGTTCACTTCTTGGTGACCTCTAACCCCTAGGTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114830954 52 + 124281992 TGCTCTGGATTTTGGGAGTGTTCACTGCTTGGTGACCTTTAACCCCTGGGTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 475199 52 - 9212255 TGCTCTGGGTTTTGGGAGTGTTTGCTTCTTGGTGACCTTTAACCCCTGGGTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2894294 52 + 4466143 TGCTCTGGGTTTTGGGAGTGTTTGCTTCTTGGTGACCTTTAACCCCTGGGTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1597155 52 + 5364348 TGCTCTGGGTTTTGGGAGTGTTCGCTTCTTGGTGACCTTTAACCCCTGGGTT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6733208 52 - 9870158 TGCCCTGGGTTTGGGGAATGTTTCCTTCTTGGTGACCTTTAGCCCCTGGGTC i proCoq1.NW_012154285v1 I 1001 I 344 s otoGar3.GL873618 4318217 51 + 7922563 TGACCTTGCTTTCGGCAGTG-CTCCTTCTTGGTGATCTTTAGCCCCTGGGTC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33171923 51 - 38964690 TGCCGTCTGTCCTGGAAATGTTTACTTCTTGGAGACCTTTAA-CCCTGAGTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 854012 13 - 1116856 ---------------------------------------TCACCTCTGAGTC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9479371 936 - 31815103 I e mm10.chr5 124817407 93 + 151834684 I a score=1514536.000000 s hg38.chr12_KI270834v1_alt 87192 126 + 119498 TTTTCTAGAAGAGTCTGTGGGAGAAGCCCATCTCTGTCACCGCACAGATGCCTTCTAAGGGTCCCAGTGGCTTGTTCAATCCTGGGCTTCAGTCTTA---AGT-GATGGGGCTG----TTTGATATTTATGGGC s panTro5.chr12 127372758 126 + 137163284 TTTTCTAGAAGAGTCTGTGGGAGAAGCCCATCTCTGTCACCACACAGATGCCTTCTAAGGGTCCCAGTGGCTTGTTCAATCCTGGGCTTCAGTCTTA---AGT-GATGGGGCTG----TTTGATATTTATGGGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125723066 126 + 135337776 TTTTCTAGAAGAGTCTGTGGGAGAAGCCCATCTCTGTCACCACACAGATGCCTTCTAAGGGTCCCAGTGGCTTGTTCAATCCTGGGCTTCAGTCTTA---AGT-GATGGGGCTG----TTTGATATTTATGGGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236687 126 - 8369578 TTTTCTAGAAGAGTCTGTGGGAGAAGCCCATCTCTGTCACCGCACAGATGCCTTCTAAGGGTCCCAGTGGCTTGTTCAATCCTGGGCTTCAGTCTTA---AGT-GATGGGGCTG----TTTGATATTTATGGGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97895092 126 + 106955855 CTTTCTAGAAAAGTCTGTGGGAGAAGCCCGTCTCTGTCACCGCACAGATGCCTTCTAAGGGTCCCAGTGGCATGTTCAATCCTGGGCTTCAGTCTTA---AGT-GATGGGGCTG----TTTGATATTTATGAGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124009314 126 + 133663169 CTTTCTAGAAGAGTCTGTGGGAGAAGCCCATCGCTGTCACTGCACGGATGCCTTCTAAGCGTCCCAGTGGCTTGTTCAATCCTGGACTTCAGTCTTA---AGT-GATGGGGCTG----TTTGATCTTTATGGGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128257400 126 + 137757926 CTTTCTAGAAGAGTCTGTGGGAGAAGCCCATCGCTGTCACTGCACGGATGCCTTCTAAGCGTCCCAGTGGCTTGTTCAATCCTGGACTTCAGTCTTA---AGT-GATGGGGCTG----TTTGATCTTTATGGGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10656058 126 - 16319837 CTTTCTAGAAGAGTCTGTGGGAGAAGCCCATCGCTGTCACTGCACGGATGCCTTCTAAGCGTCCCAGTGGCTTGTTCAATCCTGGACTTCAGTCTTA---AGT-GATGGGGCTG----TGTGATCTTTATGGGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12279713 126 + 20526591 CTTTCTAGAAGAGTCTGTGGGAGAAGCCCATCGCTGTCACTGCACGGATGCCTTCTAAGCGTCCCAGTGGCTTGTTCAATCCTGGACTTCAGTCTTA---AGT-GATGGGGCTG----TTTGATCTTTATGGGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119251640 126 + 128539186 CTTTCTAGAAGAGTCTGTGGGAGAAGCCCATCGCTGTCACTGCACAGATGCCTTCTAAGCGTCCCAGTGGCTTGTTCAATCCTGGACTTCAGTCTTA---AGT-GATGGGGCTG----TTTGATCTTTATGGGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 593733 126 + 6255621 CTTTCTAGAAGAGTCTGTGGGAGAAGCCCATCGCTGTCACTGCACGGATGCCTTCTAAGCGTCCCAGTGGCTTGTTCAATCCTGGACTTCAGTCTTA---AGT-GATGGGGCTG----TTTGATCTTTATGGGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4629316 126 - 8658521 CTTTCTAGAAGAGTCTATGGGAGAAGCCCATTGCTGTCACTGCACAGATGCCTTCTAAGCGTCCCAGTGGCTTGTTCAATCCTGGACTTCAGTCTTA---AGT-GATGGGGCTG----TTTGATCTTTGTGGGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114831006 129 + 124281992 CTTTCTAGAAGAGTCTGTGGGAGAAGCCCATCTCTATCACTGCACAGATGCCTTCCCAGGGTCCCAGTGGTTTGTTCAGTCCTGGGCTTCAATCTGAAGGAGT-GATGGGGCTG----TTTGATATTCGTGGGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 475251 129 - 9212255 CTTTCTAAAAGAGTCTGTGGGAGAAGCCCATCTCTGTCACTGCACAGATGCCATCCAAGGGTCCCAGTGGTTTGTTCAGTCCTGGGCTTCAATCTGAAGAAGT-GATGGGGCTG----TTTGACATTCGTGGGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2894346 127 + 4466143 CTTTCTAGAAGAGTCTGTGGGAGAAGCCCATCTCTGTCACTGCACAGATGCCTTCCAAGGGTTCCAGTGGTTTGTTCAGTCCTGGGCTTCAATCTGAAGAAGT-GATGGGGCTA------TGATATTCGTGGGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1597207 129 + 5364348 CTTTCCAGAAGAGTCTGTGGGAGAAGCCCATCTCTGTCACTGCACAGATGCCTTCCAAGGGTCCCAGTGGTTTGTTCAGTCCTGGGTTTCAATCTGAAGAAGT-GATGGGGCTG----TTTGATATTCGTGGGC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4318268 122 + 7922563 CATTCTGGAGGAGTCTAGAGGAAGAGTCCATCTCT----CTGCACAGATGCCAGCTAAGTG-CCCAGTGGCGTGTTCAGTCCTGGGCTTCACTCTTA---AGTGGGTAGGGCTG----CTTGATATTTACGGGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33171974 131 - 38964690 CCTCCTGGGTGAGTCTGGAGGAGGAGTCCGCCTCTGCTGCTGGACAGATGTCTTCTAAGGGCTCTTGTGTCTGGCTTGGTCCTGAGCTTCAATTTTG---AGCAGGTCAGGCTGGCTGGCTGATGCCTAGCGGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 854025 120 - 1116856 --TTCCGGATGAGTCTG-AGGAGAAGCCC---CCTCTTGCTGGGCAGATGGCTTTTAAGGG-CCCTCTGGTTTGCTCAGTCCTGGGGTGCGATCTTA---TGTGGATGGGGCTG----TGTGATGCTTATTGGC i dasNov3.JH568189 C 0 I 125 e micMur3.chr21 9479371 936 - 31815103 I e mm10.chr5 124817407 93 + 151834684 I e proCoq1.NW_012154285v1 6733260 344 - 9870158 I a score=1054041.000000 s hg38.chr12_KI270834v1_alt 87318 94 + 119498 AAGACCGCTTGGCCACAGCTTATTCACCAAATAGGGCAACAATTTTGAATCTAGCATCTGTAAGTGTGGT-------------------------------------------------GTAGAAAACACTGAAAAATGTTGT s panTro5.chr12 127372884 94 + 137163284 AAGACCGCTTGGCCACAGCTTATTCACCAAATAGGGCAACAATTTTGAATCTAGCATCCGTAAGTGTGGT-------------------------------------------------GTAGAAAACACTGAAAAATGTTGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125723192 94 + 135337776 AAGACCGCTTGGCCACAGCTTATTCACCAAATAGGGCAACAATTTTGAATCTAGCATCCGTAAGTGTGGT-------------------------------------------------GTAGAAAACACTGAAAAATGTTGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236813 94 - 8369578 AAGACCGCTTGGCCACAGCTTATTCACCAAATAGGGCAACAGTTTTGAATCTAGCATCTGTAAGTGTGGT-------------------------------------------------GTAGAAAACACTGAAAAATGTTGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97895218 94 + 106955855 AAGACCGCTTGGCCACAGCTTATTCACCGAATAGGGCAACAATTTTGAATCTGGTACCTGTAAATGTGGT-------------------------------------------------GTAGAAGACACTGAAAAATGTTGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124009440 94 + 133663169 AAGACTGCTTGGCCACAGCTTATTCACCGAATAGGGCAACAATTTTGAATCTGGCATCTGTAAATGTGGT-------------------------------------------------GTAGAAAACACTGAAAAACACTGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128257526 94 + 137757926 AAGACCGCTTGGCCACAGCTTATTCACCGAATAGGGCAACAATTTTGAATCTGGCATCTGTAAATGTGGT-------------------------------------------------GTAGAAAACACTGAAAAACACTGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10656184 94 - 16319837 AAGACCGCTTGGCCACAGCTTATTCACCGAATAGGGCAACAATTTTGAATCTGGCATCTGTAAATGTGGT-------------------------------------------------GTAGAAAACACTGAAAAACACTGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12279839 94 + 20526591 AAGACCGCTTGGCCACAGCTTATTCACCGAATAGGGCAACAATTTTGAATCTGGCATCTGTAAATGTGGT-------------------------------------------------GTAGAAAACACTGAAAAACACTGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119251766 94 + 128539186 AAGACCGCTTGGCCACAGCTTATTCACCGAATAGGGCAACAATTTTGAATCTGGCATCTGTAAATGTGGT-------------------------------------------------GTAGAAAACACTGAAAAACGCTGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 593859 94 + 6255621 AAAACCGCTTGGCCACAGCTTATTCACCGAATAGGGCAGCAATTTTGAATCTGGCATCTGTAAATGTGGT-------------------------------------------------GTAGAAAACACTGAAAAACACTGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4629442 94 - 8658521 AAGACCGCTTGGCCACAGCTTATTCACCAAATAGGGCAACAATTTTGAATCTAGCATCTGTAAATGTGGT-------------------------------------------------GTAGAAAACACTGAAAAATGCTGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114831135 91 + 124281992 AAGACTACTTGGCCACAGCTTATCCACCAAATAGGGCAACAGTTTTGAACCTGGCATCTGTAAATGTGGT-------------------------------------------------GTGGAAAACACTGACAAA---TGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 475380 94 - 9212255 AAGACCGCTTGGCCACAGCTTATTCACCAAATAGGGCAACAGTTTTGCACCTGGCATCTGTAAATGTGGT-------------------------------------------------GTGGAAAACACTGACAAATGTTGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2894473 94 + 4466143 AAGACCGCTTGGCCACAGCTTATTCACCAAATAGGGCAGCAGTTTTGAACCTGGCATCTGTAAATGTGGT-------------------------------------------------GTGGAAAACACTGACAAATGTTGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1597336 94 + 5364348 AAGACCGCTTGGCCACAGCTTATTCACCGAATAGGGCAACAATTTTGAACCTGGCATCTGTAAATGTGGT-------------------------------------------------GTGGAAAACACTGACAAATATTGT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4318390 143 + 7922563 AAGGGCATGTGGCTGTAGCTGATCTACTGGGTATGAGGACAGTTTCGAATGTTGCATCTGTAAGTATATTAAAAAAAAAAACATGATTCAGTCAGATCCTTCTATTAATAAAAAAGAAAAAAGAAAATAGTAGAAAATATTGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33172105 93 - 38964690 AAGGCTGTTTGGCCATAACTGGTCCACTGGATGTGAGAGTAGTTCCTAATCTGGTACCTA-AAAAGTGGT-------------------------------------------------ATGGAAAACACTAAAAGATACTGT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9479371 936 - 31815103 I e mm10.chr5 124817407 93 + 151834684 I e proCoq1.NW_012154285v1 6733260 344 - 9870158 I e dasNov3.JH568189 854145 125 - 1116856 I a score=839980.000000 s hg38.chr12_KI270834v1_alt 87412 80 + 119498 TTGCGTGTGGGAAAC----AATTTTCAGTATTTCTTAAACCT--A-A--GTCTTGGGGCATTTACTGAAAGAGGACAAATGAAACAGAC s panTro5.chr12 127372978 80 + 137163284 TTGCGTGTGGGAAAC----AATTTCCAGTATTTCTTAAACCT--A-A--GTCTTGGGGCATTTACTGAAAGAGGACAAATGAAACAGAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125723286 80 + 135337776 TTGCGTGTGGGAAAC----AATTTTCAGTATTTCTTAAACCT--A-A--GTCTTGGGGCATTTACTGAAAGAGGACAAATGAAACAGAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236907 80 - 8369578 TTGCGTGTGGGAAAC----AATTTTCAGTATTTCTTAAACCT--A-A--GTCTTGGGGCATTTACTAAAAGAGGACAAATGAAACAGAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97895312 80 + 106955855 TTGCCTGTGGGAAAC----AATTTTCAATATTTCTGAAACCT--A-A--GTCTTGGGGCATTTACTGGAAGAGGCCAAATGAAACAGAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124009534 76 + 133663169 TTGCATGTGGTAAAC----AATTTTCAG----ACTAAAACCT--A-A--GTCTTGGGGCATTTCCTGGAAGAGGCCAAAGGAAACAGAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128257620 80 + 137757926 TTGCATGTGGTAAAC----AATTTTCAGTATTTCTAAAACCT--A-A--GTCTTGGGGCATTTCCTGGAAGAGGCCAAAGGAAACAGAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10656278 80 - 16319837 TTGCATGTGGTAAAC----AATTTTCAGTATTTCTAAAACCT--A-A--GTCTTGGGGCATTTCCTGGAAGAGGCCAAAGGAAACAGAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12279933 80 + 20526591 TTGCATGTGGTAAAC----AATTTTCAGTATTTCTAAAACCT--A-A--GTCTTGGGGCATTTCCTGGAAGAGGCCAAAGGAAACAGAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119251860 80 + 128539186 TTGCATGTGGTAAAC----AATTTTCAGTATTTCTAAAACCT--A-A--GTCTTGGGGCATTTCCTGGAAGAGGCTAAAGGAAACAGAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 593953 80 + 6255621 TTGCATGTGGTAAAC----AATTTTCAGTATTTCTAAAACCT--A-A--GTCTTGGGGCATTTCCTGGAAGAGGCCAAAGGAAACAGAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4629536 80 - 8658521 TTGCATGTGGTAaac----aattttcagtatttctaaaacct--a-a--gtcttggggcatttactggaagaggccaaatgaaacagat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114831226 83 + 124281992 CTGCCTGTGGGAAACACACAGTTTTCAATATTTCT-AAACCT--A-A--GTCCTGGGGCATGTGCTGGAAGAGGCCAAATGAAACAGAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 475474 82 - 9212255 CTGCATGCGAGAAACACACAGTTTTCAATATTTCT-AAACCT--G-A--GTCCT-GGGCATGTGCTGGAAGAGGCCAAATGAAACGGAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2894567 83 + 4466143 CTGCATGTGGGAAACACATAGTTTTCAATATTTCT-AAACCT--A-A--GTCCTGGGGCATGTGCTGGAAGAGGCCAAATGAAACAGAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1597430 83 + 5364348 CTGCATGTGGGAAACACACAATTTTCAATATTTCT-AAACCT--G-A--GTCCTGGGGCATTTGCTGGAAGAGGCCAAATGAAACAGAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4318533 82 + 7922563 TTGCATGTGGGAAAC----AGTTTTCCATATTTCTTAAACCTAAA-A--GACCTTGGACATTTATGAGAAGAATCCAAAGGAAACATGC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33172198 85 - 38964690 TTGCTTATGGGAAATAAACCATTTTCAGTATTTCTAAAACCT--AGA--AGACTGGGCCACTTAGCAGAAGGGGCCAAATGAAACATCT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 854270 80 - 1116856 TTCCCCACAACAAAT----GCTTTTCAGTGTTTCTAAAACCT--A-GTCGATTTTGGACATTTGCCAGAA-AAGCCCAATGAACCTTC- i dasNov3.JH568189 I 125 C 0 e micMur3.chr21 9479371 936 - 31815103 I e mm10.chr5 124817407 93 + 151834684 I e proCoq1.NW_012154285v1 6733260 344 - 9870158 I a score=443022.000000 s hg38.chr12_KI270834v1_alt 87492 29 + 119498 GCTTTCTTTTATCTTGGGTGGAATTCTGT s panTro5.chr12 127373058 29 + 137163284 GCTTTCTTTTATCTTGGGTGGAATTCTGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125723366 29 + 135337776 GCTTTCTTTTATCTTGGGTGGAATTCTGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8236987 29 - 8369578 GCTTTCTTTTATCTTGGGTGGAATTCTGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97895392 29 + 106955855 GCTTTCTTTTATCTTGGGTGGAATTCTGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124009610 29 + 133663169 GCTTTCTTTTATCTTGGGTGGAATTCTGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128257700 29 + 137757926 GCTTTCTTTTATCTTGGGTGGAATTCTGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10656358 29 - 16319837 GCTTTCTTTTATCTTGGGTGGAATTCTGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12280013 29 + 20526591 GCTTTCTTTTATCTTGGGTGGAATTCTGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119251940 29 + 128539186 GCTTTCTTTTATCTTGGGTGGAATTCTGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 594033 29 + 6255621 GCTTTCTTTTATCTTGGGTGGAATTCTGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4629616 29 - 8658521 gctttcttttattttgggtggaattctgt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114831309 29 + 124281992 GCTTGCTTTTATCTTGGGTGGAATTCCGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 475556 29 - 9212255 GCTTGCTTTTATCTTGGGTGGAATTCAGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2894650 29 + 4466143 GCTTGCTTTTATCTTGGGTGGAATTCAGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1597513 29 + 5364348 GCTTGCTTTTATCTTGGGTGGAATTCCGT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6733604 29 - 9870158 GCTTCCTTTTATCTTGGGTAGAATTCTGT i proCoq1.NW_012154285v1 I 344 I 249 s otoGar3.GL873618 4318615 29 + 7922563 CCTTCCTTTCATCTTGGGTAGGTCTCTGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33172283 29 - 38964690 ACTTCCTTTTATCTGGGGTAGAATTTTGT i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 854350 29 - 1116856 ATTTTCTTTTCTCTTGGGTACAATTCTGT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9479371 936 - 31815103 I e mm10.chr5 124817407 93 + 151834684 I a score=2854221.000000 s hg38.chr12_KI270834v1_alt 87521 263 + 119498 CATTGAGTGAGGCCAGAACTTGTTAGCT----CTGCCGGGCTGATTT---------------ATATGTCTTTGATTAAGGC-TTCAGAAACAACGTGATTACTACTTAATATGATCCACGCAATGT------------------------------GATTACTGCTTAATAAAGACCACAGGCCTTTACTGAGCCCCCTGCTTGATGCTGG--------------------------------CTCCAAATACCAGGTTCACTAGGGTGGGAAGTTGCAAGATAAGCTGTTGGTCTCTGT---TCCTCACAAGGAAAGAATATCTC-AAAACATGTTTCCATCTGGCTA s panTro5.chr12 127373087 263 + 137163284 CATTGAGTGAGGCCAGAACTTGTTAGCT----CTGCCGGGCTGATTT---------------ATCTGTCTTTGATTAAGGC-TTCGGAAACAACGTGATTACTACTTAATATGATCCACGCAATGT------------------------------GATTACTGCTTAATAAAGACCACAGGCCTTTACTGAGCCCCCTGCTTGATGCTGG--------------------------------CTCCAAATACCAGGTTCACTAGGGTGGGAAGTTGCAAGATAAGCTGTTGGTCTCTGT---TCCCCACAAGGAAAGAATATCTC-AAAACATGTTTCCATCTGGCTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125723395 263 + 135337776 CATTGAGTGAGGCCAGAACTTGTTAGCT----CTGCCGGGCTGATTT---------------ATCTGTCTTTGATTAAGGC-TTCGGAAACAACGTGATTACTACTTAATATGATCCACGCAATGT------------------------------GATTACTGCTTAATAAAGACCACAGGCCTTTACTGAGCCCCCTGCTTGATGCTGG--------------------------------CTCCAAATACCAGGTTCACTAGGGTGGGAAGTTGCAAGATAAGCTGTTGGTCTCTGT---CCCCCACAAGGAAAGAATATCTC-AAAACATGTTTCCATCTGGCTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8237016 263 - 8369578 CATTGAGTGAGGCCAGAACTTGTTAGCT----CTGCCGGGCTGATTT---------------ATATGTCTTTGATTAAGGC-TTCGGAAACAACGTGATTACTACTTAATATGATCCACGCAATGT------------------------------GATTACTGCTTCATAAAGACCACAGGCCTTTACTGAGCCCCCTGCTTGATGCTGG--------------------------------CTCCAAATACCAGGTTCACTAGGGTGGGAAGTTGCAAGATAAGCTGTTGGTCTCTGT---TCCCCACAAGGAAAGAATATCTC-AAAACATGTTTCCATTTGGCTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97895421 254 + 106955855 CACTGAGTGAGGCCAGAACTTGTTAGCT----CTGCCGGGCTGATTT---------------ATACGTTTTTGATTAAGGC-TTCGGAAACAATGTGATTACTACTTAATGTGATCCACGCGATGT------------------------------GATTACTACTTAATAAAGACCACAGGCCTTTA---------CTGCCTGATGCTGG--------------------------------CTCCAAACACCAGGTTCACTAGGGTGGGAAGTTGCAAGATAAGCTGTTGGTCTCTGT---TCCCCACAAGGAAAGAATATCTC-AAAACGCGTTTCCATCTGGCTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124009639 263 + 133663169 CATTGAGTGAGGCCAGAACTTGTTAGCT----CTGCTGGGCTGATTT---------------ATATGTCTTTGATTAAGGC-TTCGGAAACAACGTGATTACTACTTAATGTGATCCACGCGATGT------------------------------GATTACTACTTAATAAAGACCACAGGCCTTTACTGAGCCCGCTGCTTGATGCTGG--------------------------------CTCCAAACACCAGGTTCACTAGGGTGGGAAGTTGCAAGATAAGCTGTTGGTCTCTGT---TCCCCATGAGGAAAGAATATCTC-AAAACATGTTTCTGTCTGGCTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128257729 263 + 137757926 CATTGAGTGAGGCCAGAACTTGTTAGCT----CTGCTGGGCTGATTT---------------ATATGTCTTTGATTAAGGC-TTCGGAAACAACGTGATTACTACTTAATGTGATCCACGCGATGT------------------------------GATTACTACTTAATAAAGACCACAGGCCTTTACTGAGCCCGCTGCTTGATGCTGG--------------------------------CTCCAAACACCAGGTTCACTAGGGTGGGAAGTTGCAAGATAAGCTGTTGGTCTCTGT---TCCCCATGAGGAAAGAATATCTC-AAAACATGTTTCTGTCTGGCTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10656387 263 - 16319837 CATTGAGTGAGGCCAGAACTTGTTAGCT----CTGCTGGGCTGATTT---------------ATATGTCTTTGATTAAGGC-TTCGGAAACAACGTGATTACTACTTAATGTGATCCACGCGATGT------------------------------GATTACTACTTAATAAAGACCACAGGCCTTTACTGAGCCCGCTGCTTGATGCTGG--------------------------------CTCCAAACACCAGGTTCACTAGGGTGGGAAGTTGCAAGATAAGCTGTTGGTCTCTGT---TCCCCATGAGGAAAGAATATCTC-AAAACATGTTTCTGTCTGGCTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12280042 263 + 20526591 CATTGAGTGAGGCCAGAACTTGTTAGCT----CTGCTGGGCTGATTT---------------ATATGTCTTTGATTAAGGC-TTCGGAAACAACGTGATTACTACTTAATGTGATCCATGCAATGT------------------------------GATTACTACTTAATAAAGACCACAGGCCTTTACTGAGCCCCCTGCTTGATGCTGG--------------------------------CTCCAAACACCAGGTTCACTAGGGTGGGAAGTTGCAAGATAAGCTGTTGGTCTCTGT---TCCCCATGAGGAAAGAATATCTC-AAAACATGTTTCTGTCTGGCTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119251969 263 + 128539186 CATTGAGTGAGGCCAGAACTTGTTAGCT----CTGCTGGGCTGATTT---------------ATATGTCTTTGATTAAGGC-TTCGGAAACAACGTGATTACAACTTAATGTGATCCACGCAATGT------------------------------GATTACTACTTAACAAAGACCACAGGCCTTTACTGAGCCCCCTGCTTGATGCTGG--------------------------------CTCCAAACACCAGGCTCACTAGGGTGGGAAGTTGCAAGATAAGCTGTTGGTCTCTGT---TCCCCATGAGGAAAGAATATCTC-AAAACATGTTTCTGTCTGGCTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 594062 263 + 6255621 CATTGAGTGAGGCCAGAACTTGTTAGCT----CTGCTGGGCTGATTT---------------ATATGTCTTTGATTAAGGC-TTCGGAAACAACGTGATTACTACTTAATGTGATCCACGCAATGT------------------------------GATTAGTACTTAATAAAGACCACAGGCCTTTACTGAGCCCGCTGCTTGATGCTGG--------------------------------CTCCAAACACCAGGTTCACTAGGGTGGGAAGTTGCAAGATAAGCTGTTGGTCTCTGT---TCCCCATGAGGAAAGAATATCTC-AAAACATGTTTCTGTCTGGCTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4629645 263 - 8658521 cattgagtaaggccagaacttgttagct----ctgctgggctgattt---------------atatgtctttgattaaggc-ttcggaaacaatgtgattactacttaatGTGATCCACGCAATGT------------------------------GATTACTACTTAATAAAGACCACAGGCCTTTACTGAGCCCCCTGCTCGATGCTGG--------------------------------CTGCAAACACCAGGTTCACTAGGGTGGGAAGTTGCAAGATAAGCTGTTGGTCTCTGT---TCCCCGCAAGGAAAGAATATCTC-AAAACATGTTTCCGTCTGGCTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114831338 293 + 124281992 GCTCGAGTGAAGCCAGAACTTGTTAGCT----CTGCCGGGCTGGTTT---------------ATATGCCTTTGATTAAGGC-TTCGGAAACAATGTGATTGCTACTTACTGTGATCCTGGCAATGTGATTGCTACTTCATATGATCCACACCGTGGGATTACTGCTTAATAAAGACCGCAAGCCTTTCCCGAGCCC-CTGCTTGACGCTGG--------------------------------CTCCAAACACCAGGTTCACTGGGGTGGGGAATTACAAGATGAGCTGTTGGTCTCTGT---TCCCCATGAGGAAAGAGTATCTCAAAAAAATGTTTCTGTCTGGCTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 475585 293 - 9212255 CCTCGAGAGAAGCCAGAACTTGTTAGCT----CTGCTGGGCTGGTTA---------------ATATGCCTTTGATTAAGGC-TTCGGAAACAATGTGATTACTGCTTCATGTGATCCTCACGATGTGATTGCTACTTAATATGATCCACACCGTGGGATTACTGCTTAATAAAGACCACAAGCCTTTCCCGAGCCG-CTGCTTGACACTGG--------------------------------CTCCAAATGCCAGGTTCACTGGGGTGGGGAGTTGCAAGATGAGCTGTTGGTCTCTGT---TCCCCACGAGGAAAGAATATCTCAAAAAAATGTTTCTGTCTGGCTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2894679 292 + 4466143 CCTCGAGTGAAGCCAGAACTTGTTAGCT----CTGCCGGGCTGGTTT---------------ATATGCCTTTGATTAAGGC-TTCGGAAACAATGTGATTACTACTTAATGTGATCCTCACAATGTGATTGCTACTTAATATGATCCACACCGTGGGATTACTGCTTAATAAAGACCGAAATCCTTTCCCGGGCCC-CTGCTTGACACTGG--------------------------------CTCCAAACGCCAGGTTCACTGGGGTGGGGA-TTGCAAGATGAGCTGTTGGTCTCTGT---TCCTCACGAGGAAAGAGTATCTCAAAAAAATGTTTCTGTCTGGCTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1597542 293 + 5364348 CCTCGAGTGAAGCCAGAACTTGTTAGCT----CTGCTGGGCTGGTTT---------------ATATGCCTTTGATTAAGGC-TTCGGAAACAATGTGATTACTACTTAATGTGATCCTCGCAATGTGATTGCTACTTAATATGATCCACATCATGGGATTACTGCTTAATAAAGACCGCAAGCCTTTCCCGAGCTC-CTGCTTGATGCTGG--------------------------------CTCCAAACGCCAGGTTCACTAGGGTGGACAGTTGCAAGATGAGCTATTGGTCTCTGT---TCCCTATGCGGAAAGAGTATCTCAAAAAAATGTTTCTTTCTGGCTA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4318644 274 + 7922563 ---GAAGTGGGGCCCGAGCTCATTAGCT----CTGCTGGGCTTATTT---------------ACTTGTCTTTAATTAAGTG-TTCAGAAACAATGTGATTACTAAATAA-------------ATAG------------------------------CTTTGAGACAAAATGAGTCTCACAAACATTTCCTGAGCCCCCTGCTAAATGTTGGGCTCTGCCGAGCCTTAGAATTGAACAAAGTCTTTCAAAACACTAGG-TCACTGGGGTGGGAAATTGCAGAATGAGCTGGTGATCTCTGT---TTTCTATGAAGAAAGAATAGCTC-AAAAAATGTTTCGTCTTA---- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33172313 282 - 38964690 ACCCAAGCAGGACCAGATCTCATGAGTT----CTACTGGGAGTGTCT---------------TTAAGTTACTGATTAAAGCATTCAGAAACAATGTGATTACTGCTTAATA----------AATAG------------------------------CTTTGAGACTAGATGCATCCCGCAAACATTTACCCAGCCC---ACTAGATGCTGGGTTCTGCTGAGCCCTGCAATTGAACATGATCTTCTAAAACCCTGGGCTTCCTAGGGTAGGAAGTCCCAAAATGACCTGGTATTCTTTGT---TTCTAA-AAGAAGAGACTGTCTC-CAATGATGTTTCCTTCTGGCTA i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 854379 279 - 1116856 GACCAAACAAGAATTGAGCTTTTTAGCTCATGCTGCTGAGCCGTTCTGATAAGCATATTTGCACATGCCTTTGAGTCAGCA-TTCAGG------GTGA------------------------ATAG------------------------------CTTTGAGACAAAATGCATTCCACAGACGTTTATCAAGTTCCCTGCTAGATGGTAA---ATGCTGAGCCCTGGAGTGGGACAAAATCCTTCAAAACCTCGGGTTCACTAGAGTGCAAGATAGGAAAATGAGATG-----CACTGTCCATCTTTGCAACGAAATGCTATTCC-AAGAAAGGTTCCCTTCTGGCTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9479371 936 - 31815103 I e mm10.chr5 124817407 93 + 151834684 I e proCoq1.NW_012154285v1 6733633 249 - 9870158 I a score=593941.000000 s hg38.chr12_KI270834v1_alt 87784 38 + 119498 -----------GCCCTG----TTAGCAAGGTATCAAGCTGGTTCTTCTGGAAT s panTro5.chr12 127373350 38 + 137163284 -----------GCCCTG----TTAGCAAGGTATCAAGCTGGTTCTTCTGGAAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125723658 38 + 135337776 -----------GCCCTG----TTAGCAAGGTATCAAGCTGGTTCTTCTGGAAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8237279 38 - 8369578 -----------GCCCTG----TTAGCAAGATATCAAGCTGGTTCTTCTGGAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97895675 38 + 106955855 -----------GCCCTG----TTAGCAAGGTATCAAGCTGGTTCTTCTGGAAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124009902 38 + 133663169 -----------GCCCTG----TTAGCAAGGTATCAAGCTGGTTCTTCTGGAAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128257992 38 + 137757926 -----------GCCCTG----TTAGCAAGGTATCAAGCTGGTTCTTCTGGAAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10656650 38 - 16319837 -----------GCCCTG----TTAGCAAGGTATCAAGCTGCTTCTTCTGGAAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12280305 38 + 20526591 -----------GCCCTG----TTAGCAAGGTATCAAGCTGGTTCTTCTGGAAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119252232 38 + 128539186 -----------GCCCTG----TTAGCAAGGTATCAAGCTGGTTCTTCTGGAAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 594325 38 + 6255621 -----------GCCCTG----TTAGCAAGGTATCAAGCTGGTTCTTCTGGAAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4629908 38 - 8658521 -----------GCCCTA----TTAGCAAGGTATCAAGCTGGTTCTTCTGGAAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114831631 38 + 124281992 -----------GCCCTG----TTAGCAAGGTGTCGAGTTGCTTCTTCTGGAAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 475878 38 - 9212255 -----------GCCCTG----TTAGCAAGGTGTCGAGTTGCTTCTTCTGGAAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2894971 38 + 4466143 -----------GCCCCG----TTAGCAAGGCGTCGAGTTGCCTCTTCTGGAAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1597835 38 + 5364348 -----------GTCCTG----TTAGCAAGGTGTCGAGTTGCTTCTTCTGGAAT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9480307 38 - 31815103 -----------GCCCTG----TTAGCAAGGCGTCAAGCCGGTCCTTCTAGAAT i micMur3.chr21 I 936 C 0 s proCoq1.NW_012154285v1 6733882 38 - 9870158 -----------GCCCTG----TTAGCAAGGTGTCAAGCCGATCCTTCTAGAAT i proCoq1.NW_012154285v1 I 249 C 0 s otoGar3.GL873618 4318918 38 + 7922563 -----------GCCCTG----TTAGCAAGGTATCAAGTTGGTCCTTCTAGGAT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33172595 38 - 38964690 -----------GCCCCA----TTAGCAATGTGTCCAAGCATTTCTCCTAGAAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 854658 53 - 1116856 GAGTTGGGATGGATATGTGCATTAGCAGTAAGTCAAGCTGGTTCTTCTAGATT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124817407 93 + 151834684 I a score=422600.000000 s hg38.chr12_KI270834v1_alt 87822 25 + 119498 GTTCCTTTTGGTTGTGGCCAGAAGG s panTro5.chr12 127373388 25 + 137163284 GTTCCTTTTGGTTGTGGCCAGAAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125723696 25 + 135337776 GTTCCTTTTGGTTGTGGCCAGAAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8237317 25 - 8369578 GTTCCTTTTGGTTCTGGCCAGAAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97895713 25 + 106955855 GTTCCTTTTGGTTGTGGCCAGAAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124009940 25 + 133663169 GTTCCTTTTGGTTGTGGCCAGAAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128258030 25 + 137757926 GTTCCTTTTGGTTGTGGCCAGAAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10656688 25 - 16319837 GTTCCTTTTGGTTGTGGCCAGAAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12280343 25 + 20526591 GTTCCTTTTGGTTGTGGCCAGAAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119252270 25 + 128539186 GTTCCTTTTGGTTGTGGCCAGAAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 594363 25 + 6255621 GTTCCTTTTGGTTGTGGCCAGAAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4629946 25 - 8658521 GTTCCTTTTGGTTGTGGCCAGAAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114831669 24 + 124281992 GTTC-CTTTGGTTGTGGCTGGAAGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 475916 24 - 9212255 GTTC-TTTTGGTTGTGGCCGGAAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2895009 24 + 4466143 GCTC-CTTTGGTTGTGGCCGGAAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1597873 25 + 5364348 GTTCTTTTTGGTTGTGGCCGGAAGG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9480345 25 - 31815103 GTTCCTTTAGATTGTGGCCAGAAGG i micMur3.chr21 C 0 I 35 s proCoq1.NW_012154285v1 6733920 25 - 9870158 GTTCCTTTCGATTGTGGCCAGAAGG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4318956 25 + 7922563 GTTCCTTTTGGTTGTGACCAGAGGG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124817500 25 + 151834684 GTTCCCGTTGGTCATGGGCAGAAAG i mm10.chr5 I 93 C 0 s canFam3.chr26 33172633 24 - 38964690 GTTCCTTCTGATTGTG-CTAGGAGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 854711 25 - 1116856 GCTCCGTTTGACTGTGGCCAGAAGG i dasNov3.JH568189 C 0 C 0 a score=412301.000000 s hg38.chr12_KI270834v1_alt 87847 31 + 119498 TAAA---CTCACGGCAGCCTCCCTCTCCTCCCGT s panTro5.chr12 127373413 34 + 137163284 TAAACTGCTCACGGCAGCCTCCCTCTCCTCTCGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125723721 34 + 135337776 TAAACTGCTCACGGCAGCCTCCCTCTCCTCTCGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8237342 34 - 8369578 TAAACTGCTCACGGCAGCCTCCCTCTCCTCCTGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97895738 34 + 106955855 TAAACTGCTCACGGCAGCCTCCCTCTCCTCCCGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124009965 34 + 133663169 TAAACCGCTCACGGCAGCCTCCCTCTCCTCCCGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128258055 34 + 137757926 TAAACCGCTCACGGCGGCCTCCCTCTCCTCCCGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10656713 34 - 16319837 TATACCGCTCACGGCAGCCTCCCCCTCCTCCCGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12280368 34 + 20526591 TAAACCGCTCACGGCAGCCTCCCTCTCCTCCCGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119252295 34 + 128539186 TAAACCGCTCACAGCAGCCTCCCTCTCCTCCCGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 594388 34 + 6255621 TAAACCGCTCACGGCAGCCTCCCTCTCCTCCCGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4629971 34 - 8658521 TAAACTGCTCATGGCAACCTCCCTCTCCTCCCGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114831693 31 + 124281992 TAA---ACTCACGGCAGCCTCCCTCTCCTCTGGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 475940 34 - 9212255 TAAACTACTCACAGCAGCCTCCCTCTCCTCTGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2895033 34 + 4466143 TAAACTACTCACGGCAGCCTCCCTCTCCTCTGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1597898 34 + 5364348 TAAACTACTCACGGCAGCCTCCCTCTCCTCCGGT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6733945 30 - 9870158 -CAGCTGCTCACTGCAGCCTCCCTCCCCTGT--- i proCoq1.NW_012154285v1 C 0 I 5 s otoGar3.GL873618 4318981 30 + 7922563 -CAACTGCTCACTGCAGCCTCCCTCTCTTGC--- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124817525 30 + 151834684 -GAGCTGCTCATGGTGGCCTTCCTGTCCCAT--- i mm10.chr5 C 0 C 0 s canFam3.chr26 33172657 30 - 38964690 -TAACGGCTTACCGTAGCCCTTATCTCCTGT--- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 854736 30 - 1116856 TAAAAT-CTCACGGCAGTCCCTCTCCCCTCC--- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9480370 35 - 31815103 I a score=4424093.000000 s hg38.chr12_KI270834v1_alt 87878 230 + 119498 GCCAGGTGGCTGAACGACCTGGATGAGCTGATGCACCGGCGCGTGAAGCTGCTGGGGGACTGCCTGCTCTGCGCGGCTTTCCTCAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGTGACGAGATGGTCAATCGGATTTGGCAAAATGACATCCTGGAGCGGGAGATCCCCCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAGGTG s panTro5.chr12 127373447 230 + 137163284 GCCAGGTGGCTGAACGACCTGGATGAGCTGATGCACCAGCGCGTGAAGCTGCTGGGGGACTGCCTGCTCTGCGCGGCTTTCCTCAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGTGACGAGATGGTCAATCGGATTTGGCAAAATGACATCCTGGAGCGGGAGATCCCCCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAGGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125723755 230 + 135337776 GCCAGGTGGCTGAACGACCTGGATGAGCTGATGCACCGGCGCGTGAAGCTGCTGGGGGACTGCCTGCTCTGCGCGGCTTTCCTCAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGTGACGAGATGGTCAATCGGATTTGGCAAAATGACATCCTGGAGCGGGAGATCCCCCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAGGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8237376 230 - 8369578 GCCAGGTGGCTGAATGACCTGGATGAGCTGATGCACCGGCGTGTGAAGCTGCTGGGGGACTGCCTGCTCTGCGCGGCTTTCCTCAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGTGACGAGATGGTCAATCGGATTTGGCAAAATGACATCCTGGAGCGGGAGATCCCCCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAGGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97895772 230 + 106955855 GCCAGGTGGCTGAACGACCTGGATGAGCTGATGCACCGGCGCGTGAAGCTGCTGGGGGACTGCCTGCTCTGCGCGGCTTTCCTGAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGTGACGAGATGGTCAACCAGATTTGGCAAAACGACATCCTGGAACGGGAGATCCCCCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACAGACGATGTTGAGATCAGCAGGTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124009999 230 + 133663169 GCCAGGTGGCTGAATGACCTGGATGAGCTGATGCACCGGCGCGTGAAGTTGCTGGGGGACTGCCTGCTCTGCGCGGCCTTCCTGAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGTGACGAGATGGTCAATCGGATTTGGCAAAACGACATCCTGGAGCGGGAGATTCCTCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAGGTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128258089 230 + 137757926 GCCAGGTGGCTGAATGACCTGGATGAGCTGATGCACCGGCGCGTGAAGTTGCTGGGGGACTGCCTGCTCTGCGCGGCCTTCCTGAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGTGACGAGATGGTCAATCGGATTTGGCAAAACGACATCCTGGAGCGGGAGATTCCTCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAGGTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10656747 230 - 16319837 GCCAGGTGGCTGAATGACCTGGATGAGCTGATGCACCGGCGCGTGAAGTTGCTGGGGGACTGCCTGCTCTGCGCGGCCTTCCTGAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGTGACGAGATGGTCAATCGGATTTGGCAAAACGACATCCTGGAGCGGGAGATTCCTCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAGGTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12280402 230 + 20526591 GCCAGGTGGCTGAATGACCTGGATGAGCTGATGCACCGGCGCGTGAAGTTGCTGGGGGACTGCCTGCTCTGCGCGGCCTTCCTGAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGTGACGAGATGGTCAATCGGATTTGGCAAAACGACATCCTGGAGCGGGAGATTCCTCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAGGTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119252329 230 + 128539186 GCCAGGTGGCTGAACGACCTGGATGAGCTGATGCACCGGCGCGTGAAGTTGCTGGGGGACTGCCTGCTCTGCGCGGCCTTCCTGAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGTGACGAGATGGTCAATCGGATTTGGCAAAACGACATCCTGGAGCGGGAGATTCCTCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAGGTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 594422 230 + 6255621 GCCAGGTGGCTGAATGACCTGGATGAGCTGATGCACCGGCGTGTGAAGTTGCTGGGGGACTGCCTGCTCTGCGCGGCCTTCCTGAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGTGACGAGATGGTCAATCGGATTTGGCAAAACGACATCCTGGAGCGGGAGATTCCTCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAGGTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4630005 230 - 8658521 GCCAGGTGGCTGAACGACCTGGATGAGCTGATGCACCGGCGCGTGAAGTTGCTGGGGGACTGCCTGCTCTGCGCGGCCTTCCTGAGCTACGAGGGAGCCTTCACGTGGGAGTTCCGTGACGAGATGGTCAATCGGATTTGGCAAAACGACATCCTGGAGCGGGAGATTCCTCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAGGTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114831724 230 + 124281992 GCCAGGTGGCTGAATGACTTGGATGAGCTGATGCAACGGCGCGTGAAGCTGCTGGGGGACTGCCTGCTGTGCGCGGCTTTCCTGAGCTATGAAGGAGCCTTCACCTGGGAGTTCCGAGATGAGATGGTCCATCGGATTTGGCAAAATGACCTCCTGAGGCGGGGGATCCCCCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAGGTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 475974 230 - 9212255 GCCAGGTGGCTGAATGACTTGGATGAGCTGATGCACCGGCGCGTGAAGCTGCTGGGAGACTGCCTGCTGTGTGCGGCTTTCCTGAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGAGATGAGATGGTTCATCAGATTTGGCAAAATGACCTACTGGAGCGGGAGATCCCCCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATTAGCAGGTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2895067 230 + 4466143 GCCAGGTGGCTGAATGACTTGGATGAGCTGATGCACCGGCGCGTGAAGCTGCTAGGGGACTGCCTGCTGTGCGCAGCTTTCCTGAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGAGACGAGATGGTTCATCAGATTTGGCAAAATGACCTGCTGGAGCGGGAGATCCCCCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGACGTTGAGATCAGCAGGTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1597932 230 + 5364348 GCCAGGTGGCTGAATGACTTGGATGAGCTGATGCACCGGCGCGTGAAACTGCTGGGGGACTGCCTGCTATGTACGGCTTTCCTGAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGAAATGAGATGGTCCATCAGATTTGGCAAAATGACCTCCTGGAGCGGGAGATCCCCCTGAGCCAGCCTTTCCGGCTAGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAGGTG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9480405 230 - 31815103 GCCAGGTGGACGAACGACCTGGAGGAGCTGAAGCACCGGCGCGTCAAGCTGCTGGGGGACTGCCTGCTCTGCGCCGCCTTCCTGAGCTACGAGGGCGCCTTCACCTGGGAGTTCCGCAACGAGATGGTCAACGAGATCTGGCAGAACGACATCCTGGAGCGGGAGATCCCCCTGAGCCAGCCCTTCCGCCTAGAGAGCCTGCTCACCGACGACGTGGAGATCAGCAGGTG i micMur3.chr21 I 35 I 145 s proCoq1.NW_012154285v1 6733980 229 - 9870158 -CCAGGTGGCTGAAGGACCTGGACGAGCTGATGCACCGGCGCGTCAAGTTGCTGGGAGACTGCCTGCTCTGCGCCGCCTTCCTGAGCTACGAAGGCGCCTTCACCTGGGAGTTCCGCCACGAGATGGTCAACGAGATTTGGCAGAACGACATCCTGGAGCGGGACATCCCCCTGAGCCAGCCGTTCCGCCTCGAAAGCCTGCTCACGGACGACGTGGAGATCAGCAGGTG i proCoq1.NW_012154285v1 I 5 C 0 s otoGar3.GL873618 4319011 230 + 7922563 ACCAGGTGGCTGAAGGACTTGGATGAGCTGATGCACCGGCGTGTGAAGCTGCTGGGGGACTGCCTTCTCTGTGCTGCCTTCCTGAGCTATGAAGGTGCCTTCACCTGGGAGTTCCGAAATGAGATGGTCAATCAGATTTGGCAAAATGACATCTTGGATCGAGACATCCCTCTGAGCCAGCCTTTCCGGCTAGAAAGCCTACTCACAGATGATGTCGAGATCAGCAGGTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124817555 229 + 151834684 -GCAGGTGGCTGAACGACCTGGATGAGCTAATGCACCGGCGGGTGAAGCTGCTAGGCGACTGCTTGCTCTGTGCGGCCTTCTTGAGCTACGAGGGCGCCTTTACCTGGGAGTTTCGTGATGAGATGGTCAACCAGGTGTGGCAGAACGACATCTTGGATCGCGACATCCCCCTGAGCCAGCCTTTCCGACTGGAGAACCTCCTCACAGATGATGTTGAGATTAGCAGGTA i mm10.chr5 C 0 C 0 s canFam3.chr26 33172687 230 - 38964690 GCCAGGTGGCTGAGCGACCTGGAGGAGCTGATGCACCGGCGAGTGAAGCTGCTGGGGGATTGCCTGCTCTGCTCAGCTTTCCTGAGCTATGAGGGCGCATTCACCTGGGAGTTCCGTGACCAGATGGTCAAGCAAGTTTGGCAGAATGATATCCTGGAGCGGGAGATTCCCCTGAGCCAGCCTTTCCGGTTAGAAAACCTGCTCACCGATGATGTTGAGATCAGCAGGTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 854766 230 - 1116856 GCCAGGTGGCTGAATGACTTGGATGAACTGATGCACCGCCGAGTGAAGTTACTGGGAGACTGCCTGCTTTGCGCTGCTTTCCTGAGCTACGAAGGGGCCTTCACGTGGGAGTTCCGAGATGAGATGGTCAATCGAGTTTGGCAGGGTGATCTCCTGGAGCGGGAGATTCCCCTGAGCCAGCCGTTTAGATTAGAAAACCTGCTCACGGATGACGTTGAGATTAGCAGGTG i dasNov3.JH568189 C 0 C 0 a score=239274.000000 s hg38.chr12_KI270834v1_alt 88108 18 + 119498 TGTGGCA-CCCTGAGCCAG s panTro5.chr12 127373677 18 + 137163284 TGTGGCA-CCCTGAGCCAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125723985 18 + 135337776 TGTGGCA-CCCTGAGCCAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8237606 18 - 8369578 TGTGGCA-CCCTGAGCCAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97896002 18 + 106955855 CGTGGCA-CCCTGAGCCAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124010229 18 + 133663169 TGTGGCA-CCCTGAGCCAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128258319 18 + 137757926 TGTGGCA-CCCTGAGCCAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10656977 18 - 16319837 TGTGGCA-CCCTGAGCCAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12280632 18 + 20526591 TGTGGCA-CCCTGAGCCAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119252559 18 + 128539186 TGTGGCA-CCCTGAGCCAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 594652 18 + 6255621 TGTGGCA-CCCTGAGCCAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4630235 18 - 8658521 TGTGGCA-CCCTGAACCAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114831954 18 + 124281992 TGTGTTG-CCCTGAGCCAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 476204 18 - 9212255 TGTGTCG-CCCGGAGCCAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2895297 18 + 4466143 TGTGTCG-CCCTGAGCCAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1598162 18 + 5364348 TGTGGCG-CCCGGAGCCAG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6734209 18 - 9870158 TGTGGCG-CTCTGAGCCAG i proCoq1.NW_012154285v1 C 0 I 157 s otoGar3.GL873618 4319241 19 + 7922563 TGTGGGGCCTCTGAGCCAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124817784 14 + 151834684 ----CCA-CACTTAGCCCA i mm10.chr5 C 0 C 0 s canFam3.chr26 33172917 18 - 38964690 TGTGTGA-GCCTGAGCCCG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 854996 17 - 1116856 -AGCGAG-GCCTGTGCCGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9480635 145 - 31815103 I a score=1766434.000000 s hg38.chr12_KI270834v1_alt 88126 181 + 119498 CAGGAGGGAGGGGACACCTTAGCACAGGG-------------------GGTCTACGTGGGTGTCACCCTGGGGGGAGG-CAATGGCCTGGGGGGCATCACCAGGACCACAGTTGGCTCGACTGCATGGAAGTGGCCGGGCAAGCTGCAAACCCAGCACGGAGCCCTTCTCCCTGGCCTCTGAGGAGGCTTGTGTGGCCTGG s panTro5.chr12 127373695 181 + 137163284 CAGGAGGGAGGGGATACCTTAGCACAGGG-------------------GGTCTACATGGGTGTCACCCTGGGGGGAGG-CAATGGCCTGGGGGGCATCACCAGGACCACAGTTGGCTCGACTGCATGGAAGTGGCCGGGCAAGCTGCAAACCCAGCACGGAACCCTTCTCCCTGGCCTCTGAGGAGGCTCGTGTGGCCTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125724003 181 + 135337776 CAGGAGGGAGGGGATACCTTAGCACAGGG-------------------GGTCTACATGGGTGTCACCCTGGGGGGAGG-CAATGGCCTGGGGGGCATCACCAGGACCACAGTTGGCTTGACTGCATGGAAGTGGCCGGGCAAGCTGCAAACCCAGCACGGAACCCTTCTCCCTGGCCTCTGAGGAGGCTTGTGTGGCCTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8237624 180 - 8369578 CAGAAGGGAGGGGACACCTTAGCACAGGG-------------------GGTCTACATGGGTGTCACCCT-GGGGGAGG-CAATGGCCTGGGGGGCATCACCAGGACCACAGTTGGCTCGACTGCATGGAAGTGGCCGGGCAAGCTGCAAACCCAGCACGGAGCCCTTCTCCCTGGCCTCTGAGGAGGCTTGTGTGGCCTGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97896020 180 + 106955855 CAGGAGGGAGGGGACACCTTAGCACA-GG-------------------GGTCTACGTGGGTGTCACCCTGGGGGGAGG-CAATGGCCTGGGGGACATCACCAGGGCCACAGTTGGCTTGACTTCATGGAAGTGGCCGGGCAAGCTGCAAACGCAGCACAGAGCCCTTCTCCCTGGCATCTGAGAAGGCTTGTGCGGCCTGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124010247 180 + 133663169 CAGGAGGAAGGCGACATCTTAGCACAAGG-------------------GGTCTACATGGGTGTCACCCCACGGGGAGG-CAATGGCCTGGGGG-CATTGCCAGGACCACAGTTGGCTTGACTGCATGGAAGTGGCTGGGCGAGCTGCAAACCCAGCATGGAGCCCTTCTCCCTAGAGCCTGAGGAGGCTTGTGCAGCCTGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128258337 180 + 137757926 CAGGAGGAAGGCGACATCTTAGCACAAGG-------------------GGTCTACATGGGTGTCACCCCACGGGGAGG-CAATGGCCTGGGGG-CATTGCCAGGACCACAGTTGGCTTGACTGCATGGAAGTGGCTGGGCGAGCTGCAAACCCAGCATGGAGCCCTTCTCCCTAGAGCCTGAGGAGGCTTGTGCAGCCTGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10656995 180 - 16319837 CAGGAGGAAGGCGACATCTTAGCACAAGG-------------------GGTCTACATGGGTATCACCCCACGGGGAGG-CAATGGCCTGGGGG-CATTGCCAGGACCACAGTTGGCTTGACTGCATGGAAGTGGCTGGGCGAGCTGCAAACCCAGCATGGAGCCCTTCTCCCTAGAGCCTGAGGAGGCTTGTGCAGCCTGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12280650 180 + 20526591 CAGGAGGAAGGGGACATCTTAGCACAAGG-------------------GGTCTACATGGGTGTCACCCCACGGGGAGG-CAATGGCCTGGGGG-CATTGCCAGGACCACAGTTGGCTTGACTGCATGGAAGTGGCTGGGCGAGCTGCAAACCCAGCATGGAGCCCTTCTCCCTAGAGCCTGCGGAGGCTTGTGCAGCCTGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119252577 180 + 128539186 CTGGAGGAAGGGGACATCTTAGCACAAGG-------------------GGTCTACATGGGTGTCACCTCACGGGGAGG-CAGTGGCCTGGGGG-CATTGCCAAGACCACAGTTGGCTTGACTGCATGGAAGCGGCTGGGCGAGCTGCAAACCCAGCATGGAGCCCTTCTCCCTAGAGCCTGAGGAGGCTTGTGCAGCCTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 594670 180 + 6255621 CAGGAGGAAGGGGACATCTTAGCACAAGG-------------------GGTCTACATGGGTGTCACCCCACGGGGAGG-CAATGGCCTGGGGG-CATTGCCAGGACCACAGTTGGCTTGACTGCATGGAAGTGGCTGGGCGAGCTGCAAACCCAGCATGGAGCCCTTCTCCCTAGAGCCTGAGGTGGCTTGTGCAGCCTGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4630253 179 - 8658521 CAGGAGGAAGGGGACATCTTAGCACAGGG-------------------GGTCTACATGGGTGTCACCCCACGGGGAGG-CAATGGCCTGGGGG-CATTGCTAGGACCACAGTTGGCTTGACTGCATGGAAGTGGCTGGGCGAGCTGCAAACCCAGCATGGAGCCCTTCTCCCTAGAGCCTGAGGA-GCCTGTGCAGCCTGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114831972 181 + 124281992 CAGGAGGGAGGGGATGCCTTAGCACAGGG-------------------GGTCTACGTGGGTGTCACCCTGGGGGGAGG-CAATGGCATCGGGGGCATAGCCAGGACCATAGCGGGCTTGACTGCCTGGAAGTGGCGGGAGGAGCTGCACACCCAGTCCGGAGCTCTTCTATCTGGAATCCAAGGAGGCTTGTGCAGCCTGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 476222 181 - 9212255 CAGGAGGGAGGGGACGCCTTAGCACAGGG-------------------GCTCTATGTGCGTGTCACCCTGGAGGGAGG-CGATGGCCTGGGGGGCGTAGCCAGGACCATAGCTGGCTTGACTGCCTGGAAGTGGCAGGAGGAGTTGCAGACCCAGTCTGGAGCTGTTCTCTCTGGAGTACAAGGAGGTTTGTGAAGCCTGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2895315 163 + 4466143 CAGGAGGG-----------------AGGG-------------------GGTCTACGTGGGTGTCACCCTGGAAGGAGG-CGATGGCCT-GGGGTCGTCGCCAGGACCGTAGCTGGCTTGACTGCCTGGAAGTGGCGGGAGGAGCTGCAGACGCAGTCTGGAGTGGTTCTCTCTGGAGTGCAAGGAGGCTTGTGCAGCCTGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1598180 181 + 5364348 CAGGAGGGAGGGGACGCCTTAGCACAGGG-------------------GGTCTACGTGGGTGTCACCCTGGGGGGAGG-CGATGGCCTGGGGGGCATAGCCAGGACCATAGCTGGCTTGACTGCCTGGAAGTGGCAGGATGAGCTGCAGACCCAGTCTGGAGCTCTTCTCTCTGGAGTCCAAGGAGGCTTGTGCCGCCTGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4319260 166 + 7922563 ----TGGGCTGAGGTGACTTTGTACA-------------------------------GAGTGTCACCCTGGGGGCAGGTTGACAGCCTGGGGGGCCTAGCAAGGGCTGCAGTTGGCATGACTGCACAGAAATAGCCAGGTGAGCTACAGGTCCAGCTCCGAGCTCTTCTTCCTGGAGTTTTAGGAGGGTTAAACAGCCTGG i otoGar3.GL873618 C 0 I 2 s mm10.chr5 124817798 94 + 151834684 ---GAGGAAGGCCAGGG--------GGAG-------------------GGTCTGCGTGAGCATC-CCCTGGGAGCTGG--AGTGGGCTGCAGG--------------------------ACTG---GGAAG--------------GCACAGCCAGCCCTGAGCC-------------------AAGGTC------------ i mm10.chr5 C 0 C 0 s canFam3.chr26 33172935 164 - 38964690 ---GAGGACAAGGGTGCCTGGGGTGGGGGGGGGCGGGGGTTGGTGAGTGGTCCACGTGGGTGTCATCCTGGTGCAGGA----------GAGGG--------AGGAGTGTAGCTGATT----TGTGTAGAAATGGCAAGGTGAGCTGCAAATCCAG------------CTTCCCCGACCCTGAGGAGAGTTGAGCAGCCTGG i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 855013 173 - 1116856 ---GAGGAGGAGGGGACCTCAGGACCAGG----------------------TTCTGTAGGAGTCAACCTGGTGGGAGGACAGCAGCCTGGGTG---TAGCAAGGGAAAGAGCCGCCGGGGTCCCGCAGAAACGGCAGTCTGAGCTGCCCCTCCAGCCGCAAGCTCTTTCCACCAGAGTCTGAGGAGAGCTGAGCAGCCCCG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9480635 145 - 31815103 I e proCoq1.NW_012154285v1 6734227 157 - 9870158 I a score=51337.000000 s hg38.chr12_KI270834v1_alt 88307 5 + 119498 GGATG s panTro5.chr12 127373876 5 + 137163284 GGATG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125724184 5 + 135337776 GGATG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8237804 5 - 8369578 GGATG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97896200 5 + 106955855 GGATG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124010427 5 + 133663169 GGATG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128258517 5 + 137757926 GGATG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10657175 5 - 16319837 GGATG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12280830 5 + 20526591 GGATG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119252757 5 + 128539186 GGATG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 594850 5 + 6255621 GGATG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4630432 5 - 8658521 GGATG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114832153 5 + 124281992 AGATG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 476403 5 - 9212255 AGGTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2895478 5 + 4466143 AGATG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1598361 5 + 5364348 GGATG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9480780 5 - 31815103 GGATT i micMur3.chr21 I 145 C 0 s otoGar3.GL873618 4319428 5 + 7922563 CGATT i otoGar3.GL873618 I 2 C 0 s canFam3.chr26 33173100 4 - 38964690 GGCT- i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 855186 5 - 1116856 GCGTG i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124817892 0 + 151834684 C e proCoq1.NW_012154285v1 6734227 157 - 9870158 I a score=4447277.000000 s hg38.chr12_KI270834v1_alt 88312 244 + 119498 GGTAGATTGTTCTGGAAGGCCAGTCCTACCACCCTTAGCCCTTGGCTCACAAATTGGTGAG---AAAAATTCATTTCCCAATGGCTGTTTCTTCCAGATGGGGATCCCAGGGCCTTCCCCCCGATGAGCTCTCCGTTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTGTGTATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGCGGGT s panTro5.chr12 127373881 244 + 137163284 GGTAGATTGTTCTGGAAGGCCAGTCCTACCACCCTTAGCCCTTGGCTCACAAATTGGTGAG---AAAAATTCATTTCCCGATGGCTGTTTCTTCCAGATGGGGATCCCAGGGCCTTCCCCCCGATGAGCTCTCCGTTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTGTGTATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGCGGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125724189 244 + 135337776 GGTAGATTGTTCTGGAAGGCCAGTCCTACCACCCTTAGCCCTTGGCTCACAAATTGGTGAG---AAAAATTCATTTCCCGATGGCTGTTTCTTCCAGATGGGGATCCCAGGGCCTTCCCCCCGATGAGCTCTCCGTTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTGTGTATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGCGGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8237809 243 - 8369578 GGTAGATTGTTCTGGAAGGCCAGTCCTAACACCCTTAGCCCTTGGCTCACAAATTGGTGAG---AAAAATTCATTTCCCGATGGCTGTTTCTTCCAGATGGGGATCCCAGGGCCTT-CCCCCGATGAGCTCTCCGTTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTGTGTATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGCGGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97896205 244 + 106955855 GGTAGATTGTTCTGGAAGGCCAGTCCTACCACCCTTAGCCCTTGGCTCACAAATTGGTGAG---AGAAATTCATTTCCCGATGGCTGTTTCTTCCAGATGGGGATCCCAGGGCCTTCCCCCCGATGAGCTCTCCATTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTCTGTATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGCGGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124010432 244 + 133663169 GGTAGATGGTTCTGGAAGGCCAGTCCTACCACCCTTAGCCCTTGGCTCACAAATTGGTGAG---AAAAGTTCATTTCCTGACGGCTGTTTCTTCCAGATGGGGATCCCAGGGCCTTCCCCCCGATGAGCTGTCTGTTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGAGGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128258522 244 + 137757926 GGTAGATGGTTCTGGAAGGCCAGTCCTACCACCCTTAGCCCTTGGCTCACAAATTGGTGAG---AAAAGTTCATTTCCTGACGGCTGTTTCTTCCAGATGGGGATCCCAGGGCCTTCCCCCCGATGAGCTGTCTGTTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGAGGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10657180 244 - 16319837 GGTAGATGGTTCTGGAAGGCCAGTCCTACCACCCTTAGCCCTTGGCTCACAAATTGGTGAG---AAAAGTTCATTTCCTGACGGCTGTTTCTTCCAGATGGGGATCCCAGGGCCTTCCCCCCGATGAGCTGTCTGTTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGAGGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12280835 244 + 20526591 GGTAGATGGTTCTGGAAGGCCAGTCCTACCACCCTTAGCCCTTGGCTCACAAATTGGTGAG---AAAAGTTCATTTCCTGACGGCTGTTTCTTCCAGATGGGGATCCCAGGGCCTTCCCCCCGATGAGCTGTCTGTTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGCGGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119252762 244 + 128539186 GGTAGATTGTTCTGGAAGGCCAGTCCTACCACCCTTAGCCCTTGGCTCACAAATTGGTGAG---AAAAGTTCATTTCCTGACGGCTGTTTCTTCCAGATGGGGATCCCAGGGCCTTCCCCCCGATGAGCTGTCTGTTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGCGGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 594855 244 + 6255621 GGTAGATGGTTCTGGAAGGCCAGTCCTACCACCCTTAGCCCTTGGCTCACAAATTGGTGAG---AAAAGTTCATTTCCTGACGGCTGTTTCTTCCAGATGGGGATCCCAGGGCCTTCCCCCCGATGAGCTGTCTGTTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGCGGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4630437 244 - 8658521 GGTAGATTGTTCTGGAAGGCCAGTCCTACCACCCTTAGCCCTTGGCTCACAAATTGGTGAG---AAAAGTTCATTTCCTGGTGGCTGTTCCTTCCAGATGGGGATCCCAGGGCCTTCCCCCCGATGACCTCTCTGTTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGCGGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114832158 244 + 124281992 GGAAGATTGTTCTGGAAGGCCAGTCCTGCCACCCTTAGCCCTTGGCTCACAAATTGGTGAG---AAAAATGCATTTCCCAATGGCTGTTTCTTCCAGGTGGGGGTCCCAGGGCCTTCCCCCTGATGAGCTCTCTGTTCAGAATGGCATCCTCACCACCAGGGCCAGCCGCTTCCCTCTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGCGGGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 476408 244 - 9212255 GGAAGATGGTTCTGGAAGGCCAGTCCTGCCACTCGTAGTCTGTGGCTCACAGATCGGTGAG---AAAAATGCATTTCCCAATGGCCGTTTCTTCCAGGTGGGGGTCCCAGGGCCTTCCCCCCGATGAGCTCTCTGTTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGCGGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2895483 244 + 4466143 GGAAGATTGTTCTGGAAGGCCAGTCCTGCCACCCTTAGCCCTTGGCTCACAAATTGGTGAG---AAAAATGCATTTCCCAATGGCTGTTTCTTCCAGGTGGGGGTCCCAGGGCCTTCCCCCCGATGAGCTGTCTGTTCAGAATGGCATCCTCACCACCAGGGCCAGCCGCTTCCCTCTCTGCATTGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAATAATCTGCGGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1598366 244 + 5364348 GGAAGATTGTTCTGGAAGGCCAATCCTGCCACCCTTAGCCCTTGGCTCACAAATTGGTAAG---AAAAATGCATTTCCCAATGGCTGTTTCTTCCAGGTGGGGGTCCCAGGGCCTTCCCCCCGATGAGCTCTCTGTTCAGAATGGCATCCTCACCACCAGGGCCAGCCGCTTCCCTCTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGCGGGT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9480785 243 - 31815103 GGTAGATTGTTCTGGAAGGCCAATCCCACCACCGTCGGCCTTTGGTTCACAACTTGGGGAG---ACAAATGGACGTCCCTGTGGCTGTCCCTT-CAGGTGGGGCTCCCAGGGGCTGCCCCCCGACGAGCTGTCGATTCAGAACGGCATCCTCACCACGCGGGCCAGCCGCTTCCCGCTCTGCATCGACCCCCAGCAGCAGGCGCTCAACTGGATCAAGAGGAAGGAAGAGAGGAACAACCTGCGGGT i micMur3.chr21 C 0 I 462 s proCoq1.NW_012154285v1 6734384 243 - 9870158 GGTAGATTGTTCTGGAAGGCCAATCTCACCACCCTTAGCACTTGATTCACAACTTGGTG-G---AAAAACGAACGTCCCTGTGCCTGTCCCTTCCAGGTGGGGCTCCCAGGGGCTGCCCCCCGACGAGCTGTCGATTCAGAACGGCATCCTCACCACCCGCGCCAGCCGCTTCCCGCTCTGCATCGACCCGCAGCAGCAGGCGCTCAACTGGATAAAGAGGAAGGAAGAGAGGAACAACCTGCGGGT i proCoq1.NW_012154285v1 I 157 I 954 s otoGar3.GL873618 4319433 244 + 7922563 GATAGATTATTCTAGAAGACCAGTCCTACCACCTATAGTCCTTGGTTTATAACTTGGTGAG---AAAAATAAATGTCCCTGTGGCTGTCCCTTCCAGGTGGGGCTCCCAGGGGCTGCCCCCTGATGAGCTGTCAATTCAAAACGGCATCCTCACCACCCGTGCCAGCCGCTTCCCCCTCTGCATCGACCCCCAGCAACAGGCTCTCAACTGGATAAAGAGGAAAGAGGAGAAAAACAACCTGCGGGT i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124817892 246 + 151834684 -ACACATTGTTCTAGAAGGCTGACCCTGTGACCTGCAGCGTTGGACTCACAGCTTGGTGGGTTAATAAGTTCATCTACTTGTGGTTGTTCCTCGCAGGTGGGGCTCCCAGGGCCTTCCCCCCGATGAGCTCTCGGTTCAGAATGGCATCCTTACAACCCGGGCCAGTCGCTTCCCACTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAACGAAAAGAGGAGAAGAATAACCTACGGGT i mm10.chr5 C 0 C 0 s canFam3.chr26 33173104 243 - 38964690 GGTAGATTGTTCTGAAAGGCTAAGCCTGTTACTCTTAGCACCCGGTT-ACAACTTGACACG---AAAAATAGATTTCCCTGTCACTGTCCCTTCCAGGTGGGGATCCCAGGGGCTGCCCCCCGATGAGCTCTCGGTTCAGAATGGCATCCTTACCACCCGGGCCAGCCGCTTCCCCCTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATAAAGAGAAAAGAGGAGAAAAATAACCTGCGGGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 855191 243 - 1116856 GGTAGGTTGTTCTGGAAGG-TACCACTTCCACTCTTAGCCTTTGGTTCATTGCTTGGCAAG---AAAAATCAGTGTCCCTCTTGCTGTCCCTTCTAGGTGGGGCTCCCAGGGACTGCCCCCCGATGAGCTCTCTGTCCAGAACGGCATCCTCACCACCAGGGCCAGCCGCTTCCCCCTCTGCATTGACCCCCAGCAGCAGGCGCTCAACTGGATAAAGAGGAAAGAGGAGAAGAACAACCTGCGGGT i dasNov3.JH568189 C 0 C 0 a score=1782192.000000 s hg38.chr12_KI270834v1_alt 88556 208 + 119498 -------ATGG-TGGCTCCTCCCAGGGCGTCTTCTGCCCCCTATTCCTGTTCT------------------CTGGAGAATG-CCC-CTCCCGCCTCCTGTA--------------------CGTGGCAGTCCC-TAGCCTCAGCGAGGCTGGGCTG-AAATGCTTCCATCCTGA-CCCCCATGCGGAGCcctccc------cc-------ggctccgcctccgcctccaccccg-TGGGTCTGCCAGGGCAGCTCAAACCGCCATGAACTCTG s panTro5.chr12 127374125 202 + 137163284 -------ACGG-TGGCTCCTCCCAGGGCGTCTTCTGCCCCCTATTCCTGTTCT------------------CTGGAGAATG-CCC-CTCCCGCCTCCTGTA--------------------CCTGGCAGTCCC-TAGCCTCAGCGAGGCTGGGCTG-AAATGCTTCCACCCTGA-CCCCCATGCGGAGCCCTCCC------CG-------GG------CTCCGCCTCCACCCCG-TGGGTCTGCCAGGGCAGCCCAAACCGCCGTGAACTCTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125724433 202 + 135337776 -------ACGG-TGGCTCCTCCCAGGGCGTCTTCTGCCCCCTATTCCTGTTCT------------------CTGGAGAATG-CCC-CTCCCGCCTCCTGTA--------------------CCTGGCAGTCCC-TAGCCTCAGCGAGGCTGGGCTG-AAATGCTTCCACCCTGA-CCCCCATGCGGAGCCCTCCC------CG-------GG------CTCCGCCTCCACCCCG-TGGGTCTGCCAGGGCAGCCCAAACCGCCGTGAACTCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8238052 202 - 8369578 -------ACGG-TGGCTCCTCCCAGGGCGTCTTCTGCCCCCTATTCCTGTTCT------------------CTGGATAATG-CCC-CTCCCGCCTCCTGTA--------------------CCTGGCAGTCCG-TAGCCTCAGCGAGGCTGGGCTG-AAATGCTTCCACCCTGA-CCCCCATGCAGAGCCCTCCC------CC-------GG------CTCCGCCTCCACCCCG-TGGGTCTGCCAGGGCAGCTCAAACCGCCATGAACTCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97896449 202 + 106955855 -------ACGG-CAGCTCCTCCCAGGGTGTCTTCTGCCCCCGATTCCTGTTCT------------------CTGGAGAATG-CCC-CTCCCACCTCCTGTA--------------------CCTGGCAGTCCC-TAGCCTCAGCGAGGCTGGGCTG-AAATGCTTCCACCCTGA-CCCCCATGCGGAGCCCTCCC------CT-------GC------CTCCGCCTCCACCCCG-TGGGTCTGCCAGGGCAGCTCAAACTACCACGAACTCTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124010676 212 + 133663169 -------ACGG-CGGCTCCTCCCGGGGCGTCTTCTGCCCCCGGTGCCTGTTCT------------------CTGGAGAGTG-CCC-CTCCCGCCTCCTGTA----------CCTGGCAGTCCCTGGCAGTCCC-TAGCCTCAACGAGTCTGGGCAG-AAACGCTTccaccctga-cccccacgcggagccctccc------cc-------ac------ctccacctccacccTG-TGGGTCTGCCAGGGCAGCGCAAACCGCCGTGAACTCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128258766 212 + 137757926 -------ACGG-CGGCTCCTCCTGGGGCGTCTTCTGCCCCCGGTGCCTGTTCT------------------CTGGAGAGTG-CCC-CTCCCGCCTCCTGTA----------CCTGGCAGTCCCTGGCAGTCCC-TAGCCTCAACGAGTCTGGGCAG-AAACGCTTccaccctga-cccccacgcggagccctccc------cc-------ac------ctccacctccacccTG-TGGGTCTGCCAGGGCAGCGCAAACCGCCGTGAACTCTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10657424 222 - 16319837 -------ACGG-CGGCTCCTCCCGGGGCGTCTTCTGCCCCCGGTGCCTGTTCT------------------CTGGAGAGTG-CCC-CTCCCGCCTCCTGTAcctggcagtccctggcagtccctggcagtccc-tAGCCTCAACGAGTCTGGGCAG-AAACGCTTccaccctga-cccccacgcggagccctccc------cc-------ac------ctccacctccacccTG-TGGGTCTGCCAGGGCAGCGCAAACCACCGTGAACTCTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12281079 212 + 20526591 -------ACGG-CGGCTCCTCCCGGGGCGTCTTCTGCCCCCGGTGCCTGTTCT------------------CTGGAGAGTG-CCC-CTCCCGCCTCCTGTA----------CCTGGCAGTCCCTGGCAGTCCC-TAGCCTCAACGAGTCTGGGCAG-AAACGCTTccaccctga-cccccacgcggagccctccc------cc-------ac------ctccacctccacccTG-TGGGTCTGCCAGGGCAGCGCAAACCACCGTGAACTCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119253006 218 + 128539186 -------ACGG-CGGCTCCTCCCGGGACGTCTTCTGCCCCCGGTGCCTGTTCT------------------CTGGAGAGTG-CCC-CTCCCGCCTCCTGTA----------CCTGGCAGTCCCTGGCAGTCCC-TAGCCTCAACGAGTCTGGGCAG-AAACGCTTCCACCCTGA-CCCCCACGCGGAGCCCTCCCCCACCTCC-------AC------CTCCACCTCCACCCTG-TGGGTCTGCCAGGGCAGCGCAAACCACCACGAACTCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 595099 212 + 6255621 -------ACGG-CGGCTCCTCCTGGGGCGTCTTCTGCTCCCGGTGCCTGTTCT------------------CTGGAGAGTG-CCC-CTCCCGCCTCCTGTA----------CCTGGCAGTCCCTGGCAGTCCC-TAGCCTCAACGAGTCTGGGCAG-AAACGCTTccaccctga-cccccatgcggagccctccc------cc-------ac------ctccacctccacccTG-TGGGTCTGCCAGGGCAGCGCAAACCACCGTGAACTCTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4630681 202 - 8658521 -------ACGG-CGGCTCCTCCCGGGGCGTCTTCTGCCCCCGGTGCCTGTTCT------------------CTGGAGAGTG-CCC-CTCCCGCCTCCCGTA--------------------CCTGGCAGTCCC-TAGCCTCAACGAGTCTGGGCAG-AAATGCTTccaccctga-cccccacgcggagccctccc------cc-------ac------ctccacctccacccTG-TGGGTCTGCCAGGGCAGCACAAACCACCGTGAACTCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114832402 203 + 124281992 -------ACTG-CGGCTCCTCCTGGGACGTCTTCTGCCCCCACTGCCCGTTCT------------------CTGGAGAGGG-TCC-TTCCTGCCTCCTCTA--------------------CCTGGCAGCCCC-TATCCTCCTTGAGGCCAGGCTGTAAATGCCCCCACCTCGA--CCCCACGCGGAGCCCTCCC------CC------TGC------CTCCACCTCCACCCCT-TGGGTCTGCCAGGGCAGCTGGAACCACCTTGAACTGTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 476652 200 - 9212255 -------ACGG-CGGCTCCTCCTGGGGCGACTTCTGCCCCCACTGCCCGTTCT------------------CTGGAGAGGG-TCC-CTCCTGCCG-CTGTA--------------------CCTGGCAGCCCC-TATCCTCCTTGAGGCCAGGCTGTAAATGCTCCCACCCTGA--CCCCACGCGGAGCCCTCCC------CC-------GC------CTCTGCCTCCACCCCT-TGGGTCTGCCAGGGCAGCTGGAACCACCTTGAACT-CA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2895727 208 + 4466143 -------ACAG-CGGCTCCTCCTGGGGTGGCATCTGCCCCCGCTGCCCGTTCT------------------CTGGAGAGGG-TTC-CTCCTGCCT-CTGTA--------------------CCTGGCAGCCCC-TATCCTCCTTGAAGCCGGGCTATAAATGCTCCCACCCTGA--CCCCATGCGGAGCCCTCCT------CCCGCCTCCGC------CTCCGCCTCCGCCCCT-TGGGGCTGCCCGGGCAGCTGGAACCACCTTGAACTCTG i cebCap1.NW_016107484v1 C 0 I 30 s aotNan1.NW_018491581v1 1598610 204 + 5364348 -------ACAG-TGGCTCCTCCTGGGGCGTCTTCTGCCCCCACTGCCTGTTCT------------------CTGGAGAGAG-TCC-CTCCTGCCTCCTGTA--------------------CCTGGCAGCCCC-TATCCTCCTTGAGGCCGGGCTGTAAATGCTCCCATCCTGA--CCCCACGCAGAGCCCTCCC------CC-----GTGC------CTCCGCATCCACCCCT-TGGGTCTGCCAGGGCAGCTGGAACCACCTTGAACTCTG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4319678 167 + 7922563 -------GGTA-TGGCCCCTCCTGG---GTCCTCTGC-CCTGCTGCCCCTTCT------------------CCAGGGAAGG-CCCTCTTCTAGCTCCTCAG---------------------------------TGCCTTCAGTAGGGC-AAGCTG-AAATGTTACCA-CCTGA-CCCCCAAGTGGGGCCCACCC------TC---------------C-----------------GAGTCTTCTAGGGTGGCACCACCCACCTTGAATTTTA i otoGar3.GL873618 I 1 I 10 s mm10.chr5 124818138 90 + 151834684 ----------G-CAGTCCCTC----------------------TGCCT-----------------------------AAAG-TCC-CTGCCCCATCCTGAA--------------------CT--------------CCACCTGAGGACTGAGCAG------------------------------------CCC------CT-------TC------CTCTGCTTA---------GGGGCT--CAGG---------------ATGAAG---- i mm10.chr5 C 0 I 2 s canFam3.chr26 33173347 197 - 38964690 -------ATGACCAGCTCTCCCTGG--TGTCCTCTGTCCTCACTGCCTGCTCC------------------TGGG-----G-CAC-AGCCTGCCTCTCTCA-----------------AGGTCTGGCAGCCCC-AGGCCCT-----GGCTGAGCTG-ACATATCACTGTCCTGAACATCTGGGTAGAGCCCTCTC------CA------TCC------CTGCACACCCGTCCTGTTGAGTCTTTGAGGGCAGCATGGCCTGCCTTGCGCTTTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 855434 186 - 1116856 ACCAGCTCCCG-CGGC-CTTCCCGG----CCCTCCGCCCTCGCTGCCCCTTCTCAGAGCCCAGCCTGGCCCCTGCAGAAGGTCCC-CTCCCGCCCTCTCTC--------------------CCTGGCAGCCCTGCGGCTCTAGGGAGACGGAGCTG--CCTGTCACCACCCCGA-CCCCAATG-AGCCCCCTCCC------CC-----TTGC------CAAGGCTTGCACTCCT--------------------------------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9481028 462 - 31815103 I e proCoq1.NW_012154285v1 6734627 954 - 9870158 I a score=248230.000000 s hg38.chr12_KI270834v1_alt 88764 30 + 119498 -CCTCTCC-------------CCTCGCAGGCTGTGAGCAACCTT--------------------- s panTro5.chr12 127374327 30 + 137163284 -CCTCTCC-------------CCTCGCAGGCTGTGAGCAACCTT--------------------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125724635 30 + 135337776 -CCTCTCC-------------CCTCGCAGGCTGTGAGCAACCTT--------------------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8238254 30 - 8369578 -CCTCTCC-------------CCTCGCAGGCTGTGAGCAACCTT--------------------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97896651 30 + 106955855 -CCTCTCC-------------CCTCGCAGGCTGTGAGCAACCTC--------------------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124010888 30 + 133663169 -CCTCTCC-------------CCTCGCAGGCTGCGAGCAACCTC--------------------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128258978 30 + 137757926 -CCTCTCC-------------CCTCGCAGGCTGCGAGCAACCTC--------------------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10657646 30 - 16319837 -CCTCTCC-------------CCTCGCAGGCTGCGAGCAACCTC--------------------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12281291 30 + 20526591 -CCTCTCC-------------CCTCGCAGGCTGCGAGCAACCTC--------------------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119253224 30 + 128539186 -CCTCTCT-------------CCTCGCAGGCTGTGACCAACCTC--------------------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 595311 30 + 6255621 -CCTCTCC-------------CCTCGCAGGCTGCGAGCAACCTC--------------------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4630883 30 - 8658521 -CCTGTCC-------------CCTTGCAGGCTGCGAGCAACCTC--------------------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114832605 30 + 124281992 -CTTCACC-------------CCTCTCAGGCTGCAGGCAACCTG--------------------- i calJac3.chr9 C 0 I 23 s saiBol1.JH378194 476852 30 - 9212255 -CATCACC-------------CCTCTCAGGCTGCAAGCAACCTG--------------------- i saiBol1.JH378194 C 0 I 23 s aotNan1.NW_018491581v1 1598814 30 + 5364348 -CATCTCC-------------CCTCTCAGGCTGCAAGCAACCTG--------------------- i aotNan1.NW_018491581v1 C 0 I 23 s otoGar3.GL873618 4319855 30 + 7922563 -CATCCCC-------------CCTCTCAAGCTCTGGGCACCATA--------------------- i otoGar3.GL873618 I 10 I 23 s mm10.chr5 124818230 10 + 151834684 -CATACCT-------------TCT----------------------------------------- i mm10.chr5 I 2 C 0 s canFam3.chr26 33173544 41 - 38964690 --CTCTCTTACCTGTGCTTTGCCTCGCA-GCTATGAGTGACTTG--------------------- i canFam3.chr26 C 0 I 16 s dasNov3.JH568189 855620 52 - 1116856 CTCGTGCC-------------TCCCTCGGGCTGTGAGCAGCTTACGATGAGAGGATGCTTTTCTC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9481028 462 - 31815103 I e proCoq1.NW_012154285v1 6734627 954 - 9870158 I e cebCap1.NW_016107484v1 2895935 30 + 4466143 I a score=504613.000000 s hg38.chr12_KI270834v1_alt 88794 46 + 119498 AGCTTCGTGTTCC-TCTGTCCAGTACGGGGTTC-G-TGGTCT-G-GGTGCT s panTro5.chr12 127374357 46 + 137163284 AGCTTCGTGTTCC-TCTGTCCAGTACGGGGTTT-G-TGGTCT-G-GGTGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125724665 46 + 135337776 AGCTTCGTGTTCC-TCTGTCCAGTACGGGGTTT-G-TGGTCT-G-GGTGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8238284 46 - 8369578 AGCTTCGTGTTCC-TCTGTCCAGTACGGGGTTC-G-TGGTCT-G-GGTGCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97896681 46 + 106955855 AGCTTCGTGTTCC-TCTGCTCAGTACGGGGTTC-C-TGGTCT-G-GGTGCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124010918 46 + 133663169 AGCTTCGTGTTCC-TCTGCCCAGTATGGGGTTC-G-TGGTCT-G-GGTGCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128259008 46 + 137757926 AGCTTCGTGTTCC-TCTGCCCAGTATGGGGTTC-G-TGGTCT-G-GGTGCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10657676 46 - 16319837 AGCTTCGTGTTCC-TCTGCCCAGTATGGGGTTC-G-TGGTCT-G-GGTGCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12281321 46 + 20526591 AGCTTCGCGTTCC-TCTGCCCAGTATGGGGTTC-G-TGGTCT-G-GGTGCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119253254 46 + 128539186 AGCTTCGTGTTCC-TCTGCCCAGTACGGGGTTC-G-TGGTCT-G-GGTGCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 595341 46 + 6255621 AGCTTCGCGTTCC-TCTGCCCAGTATGGGGTTC-G-TGGTCT-G-GGTGCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4630913 46 - 8658521 AGCTTCATCTTCC-TCTGCCCAGCACGGGGTTC-G-TGGTCT-G-GGTGCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114832658 46 + 124281992 AGCCTCGAGTTCC-TCTGCCCAGTATGGGGCTT-G-CGGTCT-G-GGTGCT i calJac3.chr9 I 23 C 0 s saiBol1.JH378194 476905 46 - 9212255 AGCCTCGTGTTCC-TCTGCCCGGTGTGGGGCTT-G-TGGGCT-G-GGTGCT i saiBol1.JH378194 I 23 C 0 s cebCap1.NW_016107484v1 2895965 46 + 4466143 AGCCTCGTGTTCC-TCCGCCCAGTGTGGGGCTT-G-TGGTCT-G-GGTGCT i cebCap1.NW_016107484v1 I 30 C 0 s aotNan1.NW_018491581v1 1598867 46 + 5364348 AGCCTCGTGCTCC-TCTGCCCGGTATGGGGCTT-G-TGGTCT-G-GGTTCT i aotNan1.NW_018491581v1 I 23 C 0 s otoGar3.GL873618 4319908 42 + 7922563 AGCTTTGCCTTCCTTCTACCCAGTACTGGGCT----TGGT-----GGCCCT i otoGar3.GL873618 I 23 C 0 s mm10.chr5 124818240 36 + 151834684 GTCTTTATTTCTC-TCTGC-----------TTG-G-TGGTCCAG-GATGCT i mm10.chr5 C 0 C 0 s canFam3.chr26 33173601 48 - 38964690 GTCTTTGCATCCT-CCTTACCTGCACAGAGCTGAG-TGGCCT-GAGATGCT i canFam3.chr26 I 16 C 0 s dasNov3.JH568189 855672 47 - 1116856 GTCTTCTGTTCCC-TTTACCCAGGACGGGGCCT-GCTGGCCT-A-AATGCT i dasNov3.JH568189 C 0 I 349 e micMur3.chr21 9481028 462 - 31815103 I e proCoq1.NW_012154285v1 6734627 954 - 9870158 I a score=143036.000000 s hg38.chr12_KI270834v1_alt 88840 16 + 119498 CAGTC---------ACTATTTTTTg s panTro5.chr12 127374403 16 + 137163284 CAGTC---------ACTATTTTTTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125724711 16 + 135337776 CAGTC---------ACTATTTTTTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8238330 16 - 8369578 CAGTC---------ACTATTTTTTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97896727 16 + 106955855 CAGTC---------ACTATTTTTgg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124010964 16 + 133663169 CAGTC---------ACTGTTTTTTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128259054 16 + 137757926 CAGTC---------ACTGTTTTTTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10657722 16 - 16319837 CAGTC---------ACTGTTTTTTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12281367 16 + 20526591 CAGTC---------ACTGTTTTTTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119253300 16 + 128539186 CAGTC---------GCTGTTTTGTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 595387 16 + 6255621 CAGTC---------ACTGTTTTTTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4630959 16 - 8658521 CAGTC---------ACTATTTTTTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114832704 16 + 124281992 CAGTC---------ACTATTCTTTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 476951 16 - 9212255 CAGTC---------ACTGTTCTTTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2896011 16 + 4466143 CGGTC---------ACTGTTCTTTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1598913 16 + 5364348 CAGTC---------ACTATTTTTTG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4319950 21 + 7922563 CAGGCTAC----ATGCTAttttttg i otoGar3.GL873618 C 0 I 343 s mm10.chr5 124818276 10 + 151834684 C---C---------ACTGTGTG--- i mm10.chr5 C 0 C 0 s canFam3.chr26 33173649 24 - 38964690 CAATCTTTTTTATTTTTATTTTTT- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9481028 462 - 31815103 I e proCoq1.NW_012154285v1 6734627 954 - 9870158 I e dasNov3.JH568189 855719 349 - 1116856 I a score=837017.000000 s hg38.chr12_KI270834v1_alt 88856 95 + 119498 gagctgaggtgggggatggggatgcaggggaggagaggggaga-----gtaatggcttgattgagatgtaattcacataccacacctttcccccactgaa s panTro5.chr12 127374419 95 + 137163284 GAGCTGAGGTGGGGGATGGGGATGCAGGGGAGGAGAGGTGaga-----gtaatggcttgattgagatgtaattcacataccacacctttcccccactgaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125724727 95 + 135337776 GAGCTGAGGTGGGGGATGGGGATGCAGGGGAGGAGAGGTGaga-----gtaatggcttgattgagatgtaattcacataccacacctttcccccactgaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8238346 95 - 8369578 GAGCTGAGGTGGGGGATGGGGATGCAGGGGAGGAGAGGTGaga-----gtaatggcttgactgagatgtaattcacataccacacctttcccccactgaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97896743 95 + 106955855 gagctgaggtgggggatggggatgcaggggaggagaggTGaga-----gtaatggcttgactgagatgtaattcacataccacaccattcccccactgaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124010980 90 + 133663169 GAGCTGAGGTGGGGGATGGGGATGCAGGGGAGGA-----Gaga-----gtaatggcttgattgagatgtaattcacataccacaccattccctcactgaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128259070 90 + 137757926 GAGCTGAGGTGGGGGATGGGGATGCAGGGGAGGA-----Gaga-----gtaatggcttgattgagatgtaattcacataccacaccattccctcactgaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10657738 90 - 16319837 GAGCTGAGGTGGGGGATGGGGATGCAGGGGAGGA-----Gaga-----gtaatggcttgattgagatgtaattcacataccacaccattccctcactgaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12281383 90 + 20526591 GAGCTGAGGTGGGGGATGGGGATGCAGGGGAGGA-----Gaga-----gtaatggcttgattgagatgtaattcacataccacaccattccctcactgaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119253316 90 + 128539186 GAGCTGAGGTGGGGGATGGGGATGCAGGGGAGGA-----Gaga-----gtcatggcttgattgagatgtcattcccataccacaccatttcctcactgaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 595403 90 + 6255621 GAGCTGAGGTGGGGGATGGGGATGCAGGGGAGGA-----Gaga-----gtaatggcttgattgagatgtaattcacataccacaccattccctcactgaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4630975 90 - 8658521 GAGCTGAGGTGGGGGATGGGGATGCAGGGGAGGA-----Gaga-----gtaatggcttgattgagatgtaattcacataccacaccattccctcactgaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114832720 94 + 124281992 GAGCTGAGGTGGGGAATGGGGATGCG-GTGAGGAGAGGTGAGG-----GTAATAGTGTGAAGCagataggattcacacaccacaacattcctccactgaa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 476967 99 - 9212255 GAGCTGAGGTTGGGGACGGGGACGCA-GTGAGGAGAGGTGAGAGTACTGtaatagcttcatgcagatggagctcacacagcacagcattcctccgccgaa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2896027 93 + 4466143 CAGCTGAGGTGGGGGACAGGGACGCA-GTGAGGAGAGGTGaga-----gtaatagcttgatgc-gatagaattcacacaccacagcattcctccaccgaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1598929 93 + 5364348 GTGCTGAGGTGGGGGATGGGGATGCA-GTGAGGAGAGGTGaga-----gtaatagcttgatgcagatagaatccacaca-cacaacattcctccactgaa i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124818286 95 + 151834684 TGTCTGGGTGGGGAGAAGGAGCTAGTGGAGGAGGGAGGCtaaa-----gtggcagctttatttagaggtgacccacttagcaagtctcacgctcactcaa i mm10.chr5 C 0 C 0 s canFam3.chr26 33173673 72 - 38964690 -------------------GAACGAA-GGAAAGATATCTCAGT--------ATCTtttagttgagatgtaattcacatactgtaaaattcacccatttaa i canFam3.chr26 C 0 C 0 e micMur3.chr21 9481028 462 - 31815103 I e proCoq1.NW_012154285v1 6734627 954 - 9870158 I e dasNov3.JH568189 855719 349 - 1116856 I e otoGar3.GL873618 4319971 343 + 7922563 I a score=854193.000000 s hg38.chr12_KI270834v1_alt 88951 75 + 119498 aacatacaattcagtttgagttttagtatatt---tacagagttgtataccaatcaccagagtcagtcttagaacatt s panTro5.chr12 127374514 75 + 137163284 aacatacaattcagtttgagttttagtatatt---tacagagttgtataccaatcaccagagtcaattttagaacatt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125724822 75 + 135337776 aacatacaattcagtttgagttttagtatatt---tacagagttgtataccaatcaccagagtcaattttagaacatt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8238441 75 - 8369578 aacatacaattcagtttgagttttagtatatt---tacagagttgtataccaatcaccagagtcaattttagaacatt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97896838 75 + 106955855 aacatacaattcagtttgagttttagtatatt---tacagagttgtataccaatcaccagagtcaattttagaacatt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124011070 75 + 133663169 cacatacaattccgtttgagttttagtatatt---tacagagtcgtataccaattaccagagtcaattttagaacatt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128259160 75 + 137757926 cacatacaattccgtttgagttttagtatatt---tacagagtcgtataccaattaccagagtcaattttagaacatt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10657828 75 - 16319837 cacatacaattccgtttgagttttagtatatt---tacagagtcgtataccaattaccagagtcaattttagaacatt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12281473 75 + 20526591 cacatacaattccgtttgagttttagtatatt---tacagagtcgtataccaattaccagagtcaattttagaacatt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119253406 75 + 128539186 cacacacaattcagtttgagttttagtgtatt---tacagagttgtataccaatgaccagagtcgattttagaacatt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 595493 75 + 6255621 cacatacaattccgtttgagttttagtatatt---tacagagtcgtataccaattaccagagtcaattttagaacatt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4631065 75 - 8658521 cacatacaattcagtttgagttttagtatatt---tacagagttgtataccaattaccagagtcagttttagaacatt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114832814 74 + 124281992 agcata-aattcagtgtgagttcgagtatgtt---gacagagttgtctaccaattaccagagtcaattttagaacatt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 477066 75 - 9212255 agcatacaactcagtgtgagtttgagcatgtt---tacagagctgtatgccaattaccagagtcaattttagaacatt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2896120 75 + 4466143 agcacacaactcagtgtgagtttgagtatgtt---tacagagttgtataccaatcaccagagtcaattttagaacatt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1599022 75 + 5364348 agcatacaagtcagtgtgagtttgagcacgtt---tacagagttgtgtaccaatcaccagagtcaattttagaacatt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4320314 70 + 7922563 AACACacaatttag--tgggttttagtgtatt---catgaagttttat---aactaccagagtcaatttcagaacatt i otoGar3.GL873618 I 343 C 0 s mm10.chr5 124818381 74 + 151834684 agcagacacgtctgtggcttttaaagagtatg---tgcagaatcctataacagttaacagagtcagt-ttagaatatt i mm10.chr5 C 0 C 0 s canFam3.chr26 33173745 66 - 38964690 agtgtacaattcaa--tgatttttagtatattatatacagtgttgtataacaatcaccagaatcagt----------t i canFam3.chr26 C 0 C 0 e micMur3.chr21 9481028 462 - 31815103 I e proCoq1.NW_012154285v1 6734627 954 - 9870158 I e dasNov3.JH568189 855719 349 - 1116856 I a score=2843154.000000 s hg38.chr12_KI270834v1_alt 89026 285 + 119498 tttattatcc---------------ct-ggaagaaatgc----tacatcctttagccatcacccctc-cagtccttccgtttctccctccccgagcccctggcagccactcatctgctttccgtct--gtgaatgtgcctcctctggacatttcttaggaatgga---ctcagac-gctgtgtggccttttgtgtctggcgcc-tttcactcagcctgatgttttcaaggtccgtccttgctgtagt--gc--atcagggcgtcattccttcctc-------------gggctgaatgatattctggtgtatgaa-cag-aca------cattgtgtt s panTro5.chr12 127374589 285 + 137163284 tttattatcc---------------ct-ggaagaaatgc----tacatcctttagccatcacccctc-ccgtccttccatttctccctccccgagcccctggcagccactcatctgctttccgtct--gtgaatgtgcctcctctggacatttcttaggaatgga---ctcagac-gctgtgtggccttttgtgtctggcgcc-tttcactcagcctgatgttttcaaggtccgtccttgctgtagt--gc--gtcagggcgtcattccttcctc-------------gggctgaatgatattccggtgtatgaa-cag-aca------cattgtgtt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125724897 285 + 135337776 tttattatcc---------------ct-ggaagaaatgc----tacatcctttagccatcacccctc-ccgtccttccatttctccctccccgagcccctggcagccactcatctgctttccgtct--gtgaatgtgcctcctctggacatttcttaggaatgga---ctcagac-gctgtgtggccttttgtgtctggcgcc-tttcactcagcctgatgttttcaaggtccgtccttgctgtagt--gc--atcagggcgtcattccttcctc-------------gggctgaatgatattccggtgtatgaa-cag-aca------cattgtgtt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8238516 284 - 8369578 tttattatcc---------------ct-ggaagaaatgc----tacatcctttagccatcacccctc-cagtgcttccatttct-cctccccaagcccctggcagccactcatctgctttccgtct--gtgaatgtgcctcctctggacatttcttaggaatgga---ctcagat-gctgtgtggccttttgtgtctggcgcc-tttcactcagcctgatgttttcaaggtctgtccttgctgtagt--gt--gtcagggcgtcattccttcctc-------------gggctgaatgatattccggtgtatgaa-cag-aca------cattgtgtt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97896913 285 + 106955855 tttattatcc---------------ct-ggaagaaatgc----tacatcctttagccatcacccctc-cagtccttccatttctccctccccgagcccctggcagccactcgtctgctttccatct--gtgaatgtgcttcctctggacatttcttaggaatgga---ctcagac-gctgtgtggccttttgtgtctggcgcc-tttcactcagcctgatgttttcaaggtctgtccttgctgcagc--gc--gtcaggaagttattccttcctc-------------gggctgaatggtattccggtgtatgaa-cag-aca------cattgtgtt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124011145 281 + 133663169 tttattatcc---------------ct-ggaagaaatgc----tatatcctttagccatcacccctc-cagtcctcccgtttctccctccctgagcccctgacagccacttacctgctttccgtc----tgaatgtgcctcctctggacatttcttaggaatggc---atcagat-gctgtgtggccttttgtgtctggcgtc-tttcactcagcctgctgttttcaaggtctgtcctcgctgtagc------gtcagggtgtcattcttgcctt-------------gggctgaatggtattccggtgtgtgaa-cag-aca------catcgtgtt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128259235 281 + 137757926 tttattatcc---------------ct-ggaagaaatgc----tatatcctttagccatcacccctc-cagtcctcccgtttctccctccctgagcccctgacagccacttatctgctttccgtc----tgaatgtgcctcctctggacatttcttaggaatggc---atcagat-gctgtgtggccttttgtatctggcgtc-tttcactcagcctgctgttttcaaggtctgtcctcgctgtagc------gtcagggtgtcattcttgcctt-------------gggctgaatggtattccggtgtgtgaa-cag-aca------catcgtgtt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10657903 283 - 16319837 tttattatcc---------------ct-ggaagaaatgc----tatatcctttagccatcacccctc-cagtcctcccgtttctccctccctgagcccctgacagccacttatctgctttccgtc----tgaatgtgcctcctctggacatttcttaggaatggc---atcagat-gctgtgtggccttttgtgtctggcgtc-tttcactcagcctgctgttttcaaggtctgtccttgctgtagc--gt--gtcagggcgtcattcttgcctt-------------gggctgaatggtattccggtgtgtgaa-cag-aca------catcgtgtt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12281548 283 + 20526591 tttattatcc---------------ct-ggaagaaatgc----tatatcctttagccatcacccctc-cagtcctcccgtttctccctccctgagcccctgacagccacttatctgctttccgtc----tgaatgtgcctcctctggacatttcttaggaatggc---atcagat-gctgtgtggccttttgtgtctggcgtc-tttcactcagcctgatgttttcaaggtctgtccttgctgtagc--gt--gtcagggcgtcattcttgcctt-------------gggctgaatggtattccggtgtgcgaa-cag-aca------catcgtgtt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119253481 283 + 128539186 tttattatcc---------------ct-ggaagaaatgc----tacatcctttagccatcacccctc-cagtcctcccatttctccctccctgagcccctgacagccactcatctgctttccgtc----tgaatgtgccgcctctggacatttcttaggaatggc---ctcagat-gctgtgtggccttttgtgtctggcgtc-tttcactcagcctgatgttttcaaggtccgtccttgcggtagc--gt--gtcagggcgtcattcctgcctt-------------gggctgaatggtattccggtgtgtgaa-cag-aca------cattgtgtt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 595568 283 + 6255621 tttattatcc---------------ct-ggaagaaatgc----tatatcctttagccatcacccctc-cagtcctcccgtttctccctccctgagcccctgacagccacttatctgctttccgtc----tgaatgtgcctcctctggacatttcttaggaatggc---atcagat-gctgtgtggccttctgtgtctggcgtc-tttcactcagcctgatgttttcaaggtctgtccttgctgtagc--gt--gtcagggcgtcattcttgcctt-------------gggctgaatggtattccggtgtgcgaa-cag-aca------catcgtgtt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4631140 282 - 8658521 tttattatcc---------------ct-ggaagaaatgc----tacatcctttagccatcacccctc-cggtcctcccatttctccctccctgagcccctgacagccactcacctgctttccgtc----tgaatgtgcctcctctggacatttcttaggaatggc---atcagat-gctgtgtggccttttgtgtctggcgta-tttcactcagcctgacgttttcaaggtccgtccttgctgtagt--gt--gtcagggcgtcattcctgcctc-------------ggg-tgaatggtattctggtgtgtgaa-cag-aca------cattgtgtt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114832888 277 + 124281992 tttattatcc---------------cc-aaaagacgtgc----tacatcctttagccatcgcccctc-cagtccctccatttctccctccccgagcccctggcagccactcatcttctttctgtct--gttaatctgcctcttctggacatgtgctaggattgga---atc----------atggccttttgt-tctgctgcc-tttcgctgagcatggtgtcttcagggtccgtcgctgctgtcgc--acg-gtcagtgcgccattccttcctc-------------ggactggatcctattccagtgtgcgaa-tagaaca------cattgtgta i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 477141 285 - 9212255 tttattatcc---------------cc-aaaagacatgc----tgcatcctttagccttcacgcctc-cagtccttccatttctcccttcctgagcccccggcagccactcatcttctttctgtc---gtgaatctgcctcttctggacatttgctaggattgga---atcagac-actatatggccttttgt-tctggcgcc-tttcactcagcatgatgccttcaaggtccggcgttgctgtagc--gcg-gtcagtgtgccgttccttcctc-------------gggctggattctgttccggtgtgtgaa-tggaaca------catggtgta i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2896195 284 + 4466143 tttattatcc---------------cc-aaaagacatgc----tacatcctttag-catcacccctc-cagtccctccatttctccctccgcgaggccccggcagccactcatcttctttctgtc---gtgaatctgcctcttctggacattggctaggattgga---atcagac-actatatggccttttgt-tctggcgcc-tttcactcagcatgatgtcttcaaggtccgcgcttgctgcagc--gtg-gtcagtgcgccattccttcctc-------------gggctgcattctgttccggtgtgtgaa-tagaaca------cattgtgta i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1599097 260 + 5364348 tttattatcc---------------cc-aaaagacatgc----tacgtcctttagccatcacccctc-cagtccctccatttctccctccccgagcacccggcagccactcatcttccttctgtc---atgaatctgcctcttctggacatttgctaggattgga---atcagac-actatatggccttttgt-tctggcacc-tttcactcagcatgacgtcttcaaggtccct----------------------------cattccttcctc-------------gggctggatcctgttccagtgtgtgaa-cagaaca------cattgtgta i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4320384 280 + 7922563 tt--tcatcc---------------ta-agaagaaaagctatatatatcttttagcgatcaccccactcaatccttcca-gccacctcctcccagcctctgacaacagctaatctactttttctc---taggatttgcctattcttgacatttcatatagatgga---atcatacaaataagcggccttccgtgtctgccttctttttgctgagc---atcttgtcaaggttcatcct---tgtagc--ata-gtcagcgttccattcctttttg-------------tggctgaagg----tccattgtatggatttg-tca------cattttgtt i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124818455 283 + 151834684 cttattaaccccatccttatcccaacc-aagaacaatga----tgtttcccttagtggttgctgccc--------------------------agccagtggcaactgctaatacagtttctgtctccatggctttgcctactcttgatatctcctatggataga---agcattt-agtagttaatcatttgtggttggcttt-tttta----------tgatgtaggggttcaacgatgtcgtagcaggt--gtaggtactttgtcccaacctctttatcttctttatagctgtatagtattcctttgtatgga-catacca------cattttgtt i mm10.chr5 C 0 C 0 s canFam3.chr26 33173811 280 - 38964690 tttaccaccc---------------ccaaaaagcaatgc----tgtgtgctttatccgtcacccgcc-ccatcctcccatcaccccc------atctcctagca-cctctaatatatttt--------gtaggttcatctcttctcaacatctcatatcagtggggttgtcatac-actatgtggcctttcatgtctggcttc-tctcactgagcatcatgtttttgaggttcatccaggttctagcaagt--gtcagagc----ttcctcttca-------------cggttgaatcatactccattgtgtgga-tag-accgccttttattttgtt i canFam3.chr26 C 0 I 213 s dasNov3.JH568189 856068 262 - 1116856 TCTTtcaccc---------------cc-aaaaagaaacc----tgtccccttta-ccatcacccc-c-caatcctcctg------ccccccagtgtccctggccaccactcttctgctctctgtctctatagatttgcctgttctggacatttcgtgtgaatgga---atctcac-cggatgtgctcttttgagtctggcttc-tttcacttggtgtgatgttttcaatgttcttcct---tgtagc--ctgaatcggagctccatttttttaat--------------ggctgaataatattccagcgtatggt----------------------- i dasNov3.JH568189 I 349 C 0 e micMur3.chr21 9481028 462 - 31815103 I e proCoq1.NW_012154285v1 6734627 954 - 9870158 I a score=1647691.000000 s hg38.chr12_KI270834v1_alt 89311 154 + 119498 catccatccatttgctgagggacagttgggttg-tcctactttttggctgtt-tgaagaatgccgctgtgaatgttggtgcacacgtttc----------------tatgtggccatgtgttttcagttctcttggggc----gatacctaggaatggaattgccgggGCGGCCCA s panTro5.chr12 127374874 154 + 137163284 catccatccatttgctgagggacagttgggttg-tcctactttttggctgtt-taaagaatgccactgtgaatgttggtgcacacgtttc----------------tatgtgaccatgtgttttcagttctcttggggc----gatacctaggaatggaattgccgggGCGGCCCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125725182 154 + 135337776 catccatccatttgctgagggacagttgggttg-tcctactttttggctgtt-tgaagaatgccgctgtgaatgttggtgcacatgtttc----------------tatgtggccatgtgttttcagttctcttggggc----gatacctaggaatggaattgccgggGCGGCCCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8238800 154 - 8369578 catccatccatttgctgagggacagttgggttg-tcctactttttggctgtt-tgaagaatgccgctgtgaatgttggtgcacacgtttc----------------tatgtggccatgtgttttcagttctcttggggc----gatacctaggaatggaattgccgggGCGGCCCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97897198 154 + 106955855 catccatccatttgctgagggacagtcgggttg-tcctactttttggctatt-tgaagaatgccgctgtgaacgttggtgcacacgtttc----------------tatgtggccatgtgttttcagttctcttggggc----gatacctaggaatggaattgccgggGCGGCCCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124011426 154 + 133663169 catccatccattcaccgagggacagtcgggtag-tccctctttttggctatt-tgcagaatgccgccgtgaacgttggtgcacacgtttc----------------tatgtggccatgtgttttcagttctcttggggt----gatacctaggagtggaattgccgggGCGGCCCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128259516 154 + 137757926 catccatccattcaccgagggacagtcgggtag-tccctctttttggctatt-tgcagaatgccgccgtgaacgttggtgcacacgtttc----------------tatgtggccatgtgttttcagttctcttggggt----gatacctaggagtggaattgccgggGCGGCCCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10658186 154 - 16319837 catccatccattcaccgagggacagtcgggtag-tccctctttttggctatt-tgcagaatgccgccgtgaacgttggtgcacacgtttc----------------tatgtggccatgtgttttcagttctcttggggt----gatacctaggagtggaattgccgggGCGGCCCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12281831 154 + 20526591 catccatccattcaccgaggcacagtcgggtgg-tccctctttttggctatt-tgcagaatgccgccgtgaacgttggtgcacacgtttc----------------tatgtggccatgtgttttcagttctcttagggc----gatacctaggagtggaattgccgggGCGGCCCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119253764 154 + 128539186 catccatccattcaccgagggacagtcgggttg-tccctctttttggctatt-tgcagaatgccgcggtgaacgttggtgcacacgtttc----------------tatgtggccatgtgttttcagttctcttggggc----gatacctaggagtggaattgctgggGCGGCCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 595851 154 + 6255621 catccatccgttcaccgagggacagtcgggtgg-tccctctttttggctctt-tgcagaatgccgccgtgaacgttggtgcacacgtttc----------------tatgtggccatgtgttttcagttctcttggggc----gatacctaggagtggaattgccggggcaGCCCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4631422 154 - 8658521 catccatccattcacagagggacagttgggttg-tccctctttttggctgtt-tgcagaatgccgctgtgaacgttggtgcacacgtttc----------------tatgtggccatgtgttttcagttctcttggggt----gatacctaggagtggaattgccggAGCGGCCCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114833165 154 + 124281992 tgtccagccactcactgaggggcatttgggctggtcccacttttt-ggtatt-tgaagaatgccgctgtgaacattggtgtgcacgtttt----------------tacatggacatatgttttcagttctcttgggtt----gatacctaggagtggaattgctggggcgtccca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 477426 147 - 9212255 catccagccactcagtg--------ttgggctgttctcactttttgggtgtt-tgaagaatgccgctgtgaacatcggtgtgcacgtttt----------------tacatggacatatgttttcagttctcttgggtt----gatagctaggagtggaattgctgggGCGTCCCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2896479 155 + 4466143 tacccagccactcactgaggggcagctgggctgttcccactttttgggtgtt-tgaagaatgccgctgtgaacattggtgtgcgcatttt----------------tacatggacacatgttttcatttctcttgggtt----gatacctaggagtggaattgctggggcatccca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1599357 155 + 5364348 catccagccactcactgaggggcaggtgggctgttcccaccttttgggtatt-tgaagaaatccgctgtgaacgttggtgtgcacgtttt----------------tacatggacatacgttttcagttctcttgggtt----gatacctaggggtggaattgctgggGCGTCCCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4320664 150 + 7922563 tatctacttgcctgttgatggataattgagttgtttccactttttggctgttgtgaatgattcc-ccgtgaatgttcatgtacaaggttt----------------tatgtgg--atgtgttttccattctcttgggta----tatacctaacagtggaattgctgggg---ccca i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124818738 113 + 151834684 actccaacc-tcagttgatgaaca---gggttg-tttccgttttatggtgct------------gctgtgaacatctgtatacacacttc----------------ttttt---catgcatgtt---TGTTGTTGGGG------------------------GCGGGGGAGGGTca i mm10.chr5 C 0 I 200 s canFam3.chr26 33174304 154 - 38964690 catccatttatccgttgatggacatttggattatttctactttttggctatgatgaataatgctgttgtgaacattcctgtacatgtttttgcgtgtgtgtatgtgtgtgtgtacatatgtgtttagttttcctggg------------------tGAAATTGGTGGG----CTCA i canFam3.chr26 I 213 C 0 s dasNov3.JH568189 856330 156 - 1116856 tatttatccatcagttaatggacattcagttgt-ttccactctggagctattaggaatgctgctactatgaatatttgtgtacgtgtttt----------------tgtgtggacgtgtgttttcatttctcttggggacatgtatacctaggagtggaattgctgggGTACA--- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9481028 462 - 31815103 I e proCoq1.NW_012154285v1 6734627 954 - 9870158 I a score=532434.000000 s hg38.chr12_KI270834v1_alt 89465 42 + 119498 ATCACTTTTTGCTGAGCTAATGAACAAATTAATTATTTTCAA s panTro5.chr12 127375028 38 + 137163284 ATC----TTTGCTGAGCTAATGAACAAATTAATTATTTTCAA i panTro5.chr12 C 0 I 1 s panPan2.chr12 125725336 38 + 135337776 ATC----TTTGCTGAGCTAATGAACAAATTAATTATTTTCAA i panPan2.chr12 C 0 I 1 s gorGor5.CYUI01015152v1 8238954 42 - 8369578 ATCACTTTTTGCTGAGCTAATGAACAAATGAATTATTTTCAA i gorGor5.CYUI01015152v1 C 0 I 1 s nomLeu3.chr10 97897352 42 + 106955855 ATCACTTTTTGCTGAGCTAATGAACAAATTAATTATTTTCAA i nomLeu3.chr10 C 0 I 1 s rheMac8.chr11 124011580 42 + 133663169 ATCACTTTTTGCTGAACTAATGAACAAATTAATGATTTTCAG i rheMac8.chr11 C 0 I 1 s macFas5.chr11 128259670 42 + 137757926 ATCACTTTTTGCTGAACTAATGAACAAATTAATGATTTTCAA i macFas5.chr11 C 0 I 1 s macNem1.NW_012010578v1 10658340 42 - 16319837 ATCACTTTTTGCTGAACTAATGAACAAATTAATGATTTTCAA i macNem1.NW_012010578v1 C 0 I 1 s cerAty1.NW_012001186v1 12281985 42 + 20526591 ATCACTTTCTGCTGAACTAATGAACAAATTAATGATTTTCAA i cerAty1.NW_012001186v1 C 0 I 1 s chlSab2.chr11 119253918 42 + 128539186 ATCACTTTTTGCTGAACTAATGAACAAATTAATGATTTTCAA i chlSab2.chr11 C 0 I 1 s manLeu1.NW_012103587v1 596005 42 + 6255621 ATCGCTTTCTGCTGAACTAATGAACAAATTAATGATTTTCAA i manLeu1.NW_012103587v1 C 0 I 1 s colAng1.NW_012116043v1 4631576 42 - 8658521 ATCACTTTTTGCTGAACTAATGAAAAAATTAATGATTTTCAA i colAng1.NW_012116043v1 C 0 I 1 s calJac3.chr9 114833319 42 + 124281992 atcactttttgctgaactaccgaacAAATTAATGATTTTCAG i calJac3.chr9 C 0 I 1 s saiBol1.JH378194 477573 42 - 9212255 ATCACTTTTTGCTGAACTAATGAACAAATGAATGATTTTCAC i saiBol1.JH378194 C 0 I 1 s cebCap1.NW_016107484v1 2896634 42 + 4466143 atcactttttgctgaactAATGAACAAATTAATGATTTTCGG i cebCap1.NW_016107484v1 C 0 I 1 s aotNan1.NW_018491581v1 1599512 42 + 5364348 ATCACTTTTTGCTGAACTAATGAACAAATTAATGATTTTCAG i aotNan1.NW_018491581v1 C 0 I 1 s otoGar3.GL873618 4320814 42 + 7922563 atcactttttgctcaactAATGAATAAATTAATGATTTTCAG i otoGar3.GL873618 C 0 I 1 s canFam3.chr26 33174458 42 - 38964690 TTCACTTTTTGCTAAACTACTTCACAAACTCATGATTTTCAG i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 856486 42 - 1116856 ATCATTTTTTGCTGACCTAATTAACAAATTAGTGGTTTCCAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9481028 462 - 31815103 I e mm10.chr5 124818851 200 + 151834684 I e proCoq1.NW_012154285v1 6734627 954 - 9870158 I a score=200910.000000 s hg38.chr12_KI270834v1_alt 89507 18 + 119498 -TTTAGCTTTTCCTCA-TTT s panTro5.chr12 127375067 18 + 137163284 -TTTAGCTTTTCCTCA-TTT i panTro5.chr12 I 1 C 0 s panPan2.chr12 125725375 17 + 135337776 -TTTAGCTTTTCCTCA--TT i panPan2.chr12 I 1 C 0 s gorGor5.CYUI01015152v1 8238997 18 - 8369578 -TTTAGCTTTTCCTCA-TTT i gorGor5.CYUI01015152v1 I 1 C 0 s nomLeu3.chr10 97897395 18 + 106955855 -TTTAGCTTTTCCTTA-TTT i nomLeu3.chr10 I 1 C 0 s rheMac8.chr11 124011623 18 + 133663169 -TTTAGCTTTTCCTTA-TTT i rheMac8.chr11 I 1 C 0 s macFas5.chr11 128259713 18 + 137757926 -TTTAGCTTTTCCTTA-TTT i macFas5.chr11 I 1 C 0 s macNem1.NW_012010578v1 10658383 18 - 16319837 -TTTAGCTTTTCCTTA-TTT i macNem1.NW_012010578v1 I 1 C 0 s cerAty1.NW_012001186v1 12282028 18 + 20526591 -TTTAGCTTTTCCTTA-TTT i cerAty1.NW_012001186v1 I 1 C 0 s chlSab2.chr11 119253961 18 + 128539186 -TTTAGCTTTTCCTTA-TTT i chlSab2.chr11 I 1 C 0 s manLeu1.NW_012103587v1 596048 18 + 6255621 -TTTAGCTTTTCCTTA-TTT i manLeu1.NW_012103587v1 I 1 C 0 s colAng1.NW_012116043v1 4631619 19 - 8658521 -TTTAGCTTTTCCTTATTTT i colAng1.NW_012116043v1 I 1 C 0 s calJac3.chr9 114833362 17 + 124281992 -TTTAGCTTTTCCTTA--TT i calJac3.chr9 I 1 C 0 s saiBol1.JH378194 477616 17 - 9212255 -TTTAGCTTTTCCTTA--TT i saiBol1.JH378194 I 1 C 0 s cebCap1.NW_016107484v1 2896677 17 + 4466143 -TTTAGCTTTTCCTTA--TT i cebCap1.NW_016107484v1 I 1 C 0 s aotNan1.NW_018491581v1 1599555 17 + 5364348 -TTTAGCTTTCCCTTA--TT i aotNan1.NW_018491581v1 I 1 C 0 s micMur3.chr21 9481490 17 - 31815103 -TTTACCTTTTCCTTA--TA i micMur3.chr21 I 462 I 1 s otoGar3.GL873618 4320857 17 + 7922563 -TTTACCGTTTCCTTA--TA i otoGar3.GL873618 I 1 C 0 s canFam3.chr26 33174501 18 - 38964690 -TTTGCTTTTTCCTTA-TTT i canFam3.chr26 I 1 I 5 s dasNov3.JH568189 856528 18 - 1116856 TTTTACATTTCCCTTT-CT- i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124818851 200 + 151834684 I e proCoq1.NW_012154285v1 6734627 954 - 9870158 I a score=353950.000000 s hg38.chr12_KI270834v1_alt 89525 22 + 119498 TTTTCTGGTCCTTGATCTCAGG s panTro5.chr12 127375085 22 + 137163284 TTTTCTGGTCCTTGATCCCAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125725392 22 + 135337776 TTTTCTGGTCCTTGATCCCAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8239015 22 - 8369578 TTTTCTGGTCCTTGATCCCAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97897413 22 + 106955855 TTTTCTGGTCCTTGATCCCAAA i nomLeu3.chr10 C 0 I 14 s rheMac8.chr11 124011641 22 + 133663169 TTTTCTGGTCCTTGATCCCAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128259731 22 + 137757926 TTTTCTGGTCCTTGATCCCAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10658401 22 - 16319837 TTTTCTGGTCCTTGATCCCAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12282046 22 + 20526591 TTTTCTGGTCCTTGATCCCAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119253979 22 + 128539186 TTTTCTGGTCCTTGATCCCAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 596066 22 + 6255621 TTTTCTGGTCCTTGATCCCAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4631638 22 - 8658521 TTTTCTGGTCCTTGATCCCAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114833379 22 + 124281992 TTCTCTGGTCCTTGATCCCAGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 477633 22 - 9212255 TTTTCTGGTCCTTGATCCCAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2896694 22 + 4466143 TTTTCTGGTCCTTGATCCCAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1599572 22 + 5364348 TTTTCTGGTCCTTGATCCCAGG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9481508 22 - 31815103 TTTTCTGGTCCTTGCTCCCGGG i micMur3.chr21 I 1 C 0 s proCoq1.NW_012154285v1 6735581 22 - 9870158 TTTTCTGGTCCTTGCTCCCGGG i proCoq1.NW_012154285v1 I 954 C 0 s otoGar3.GL873618 4320874 19 + 7922563 CTTTCTGGTCCTTGGTCT---G i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33174524 22 - 38964690 TTTTCTAGTCCCTGCTTCTACA i canFam3.chr26 I 5 C 0 s dasNov3.JH568189 856546 22 - 1116856 GTTTTTAGTCCTTACTTCCCAG i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124818851 200 + 151834684 I a score=202239.000000 s hg38.chr12_KI270834v1_alt 89547 18 + 119498 TATTTGCCTGCTGTTAGA s panTro5.chr12 127375107 18 + 137163284 TATTTGCCTGCTATTAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125725414 18 + 135337776 TATTTGCCTGCTGTTAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8239037 18 - 8369578 TGTTTGCCTGCTGTTAGA i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124011663 18 + 133663169 TATTTGCATGCTGTTTGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128259753 18 + 137757926 TATTTGCATGCTGTTTGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10658423 18 - 16319837 TATTTGCATGCTGTTTGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12282068 18 + 20526591 TATTTGCATGCTGTTTGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119254001 18 + 128539186 TATTTGCATGCTGTTTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 596088 18 + 6255621 TATTTGCATGCTGTTTGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4631660 18 - 8658521 TATTTGCATGCTGTTTGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114833401 18 + 124281992 TATTTTCATGCTGTTAGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 477655 18 - 9212255 TATTTTCATGCTGTTAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2896716 18 + 4466143 TATTTTCATGCTGTTAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1599594 18 + 5364348 TATTTTCACGCTGTTAGG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9481530 18 - 31815103 TATTCACATGCTATCGGG i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6735603 18 - 9870158 TATTTACGTGCTGTAGGG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4320893 18 + 7922563 TATTTACCACATATTGGG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33174546 18 - 38964690 TATGTACATGCTGTTGGG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 856568 18 - 1116856 TACTGAGGTGCTGCTGGG i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124818851 200 + 151834684 I e nomLeu3.chr10 97897435 14 + 106955855 I a score=512126.000000 s hg38.chr12_KI270834v1_alt 89565 43 + 119498 GGAAGCCCAT-TTGTACTCCAAGGTCAGGGGAACAGTCTGCCTC s panTro5.chr12 127375125 43 + 137163284 GGAAACCCAT-TGGTACTCCAAGGTCAGGGGAACAGTCTGCCTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125725432 43 + 135337776 GGAAACCCAT-TTGTACTCCAAGGTCAGGGGAACAGTCTGCCTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8239055 43 - 8369578 GGAAACCCAT-TTGTACTCCAAGGTCAGGGGAACAGTCTGCCTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97897449 43 + 106955855 GGAAGCCCAT-TTGTACTCCAAGGTCAGGGGAACAGTCTGCCTC i nomLeu3.chr10 I 14 C 0 s rheMac8.chr11 124011681 43 + 133663169 GGGAGCCCGT-TTGTACTCCAGGATCAGGGGAACAGTCTGCCTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128259771 43 + 137757926 GGGAGCCCGT-TTGTACTCCAGGATCAGGGGAACAGTCTGCCTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10658441 43 - 16319837 GGGAGCCCGT-TTGTACTCCAGGATCAGGGGAACAGTCTGCCTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12282086 43 + 20526591 GGGAGCCCGT-TTGTACTCCAGGGTCAGGGGAACAGTCTGCCTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119254019 43 + 128539186 GGAAGCCCAT-TTGTACTCCAGGGTCAGGGGAACAGTCTGCCTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 596106 43 + 6255621 GGGAGCCTGT-TTGTACTCCAGGGTCAGGGGAACAGTCTGCCTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4631678 43 - 8658521 GGAAGCCCAT-TTGTACTCCAGGGTCAGGGGAACGGTCTGTCTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114833419 43 + 124281992 GGAAGCCCAT-TTGTGTTCCGAGGTCAGGGGAACAGCCTGCCTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 477673 43 - 9212255 GGAAGCCCAT-TTGTGTTCCAAGGTCAGGGGAACAGCCTGCCTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2896734 31 + 4466143 GGAAGCCCA--TTGTGTTCCAAGGTCAGGGGAA----------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1599612 43 + 5364348 GGAAGTCCAT-TTGTGTTCCAAGGTCAGGGGAACAGCCTGCCTC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9481548 42 - 31815103 GGAAGCCCAC-TTGAGTCCCAAGGTCAGGGGAACA-TCTGCCTC i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6735621 42 - 9870158 GGAAGCCCAT-TTGAGTTCCAAGGTCAGGAGAACA-TCTGCCTC i proCoq1.NW_012154285v1 C 0 I 395 s otoGar3.GL873618 4320911 43 + 7922563 GGAAGGTCATAATAAGTTCCATTGTCAGGGGAACA-TCTGCCTC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33174564 13 - 38964690 ------------------------------GGAGGGTCTGCTC- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 856586 35 - 1116856 GGAAGCCCAT-CCGAG-TCCAAGGTCAGGGGA-------GCTTC i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124818851 200 + 151834684 I a score=965693.000000 s hg38.chr12_KI270834v1_alt 89608 80 + 119498 CAAAATGCACATGGAGCTATCAGGGAGCAAATACTATGAGGGCAGGAA-CTTTTCTAGAC-TCCCTCTTCCCTCAGCCTGCC s panTro5.chr12 127375168 80 + 137163284 CAAAATGCACATGGAGCTATCAGGGAGCAAATACTATGAGGGCAGGAA-CTTTTCTAGAC-TCCCTCTTCCCTCAGCCTGCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125725475 80 + 135337776 CAAAATGCACATGGAGCTATCAGGGAGCAAATACTATGAGGGCAGGAA-CTTTTCTAGAC-TCCCTCTTCCCTCAGCCTGCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8239098 80 - 8369578 CAAAATGCACATGGAGCTATCAGGGAGCAAATACGATCAGGGCAGGAA-CTTTTCTAGAC-TCCCTCTTCCCTCAGCCTGCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97897492 80 + 106955855 CAAAACGCACATGGAGCTGTCATGGAGCAAATACTATGAGGGCAGGAA-CTTTCCTAGAT-TCCCTCTTCTCTCAGCCTGCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124011724 80 + 133663169 CAAAACGCACATGGAGCTATCATGGAGCAAATACTATGAGGGCAGGAA-CTTCCCTAGAC-TCCCTCTTCCCTCAGCCTGCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128259814 80 + 137757926 CAAAACGCACATGGAGCTATCATGGAGCAAATACTATGAGGGCAGGAA-CTTCCCTAGAC-TCCCTCTTCCCTCAGCCTGCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10658484 80 - 16319837 CAAAATGCACATGGAGCTATCATGGAGCAAATACTATGAGGGCAGGAA-CTTCCCTAGAC-TCCCTCTTCCCTCAGCCTGCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12282129 80 + 20526591 CAAAATGCACATGGAGCTATCATGGAGCAAATACTATGAGGGCAGGAA-CTTCCCTAGAC-TCCCTCTTCCCTCAGCCTGCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119254062 80 + 128539186 CAAAATGCACATGGAGCTATCATGGAGCAAATACTATGAGGGCAGGAA-CTTCCCTAGAC-TCCCTCTTCCCTCAGCCTGCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 596149 79 + 6255621 CAAAATGCACATGGAGCTATCATGGAGCAAATACTATGAGGGCA-GAA-CTTCCCTAGAC-TCCCTCTTCCCTCAGCCTGCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4631721 80 - 8658521 CAAAATGCACATGGAGCTATCATGGAGCAAATACTATGAGGGCAGGAA-CTTCCCTAGAC-TCCCTCTTCCCTCAGCCTGCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114833462 63 + 124281992 TAAAATGCACATGTAGTTTTCATGGAGCAAATACTGTGAGGGCAGGAA-CTTTCCTAGA------------------CTGCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 477716 80 - 9212255 TAAAATGCACATGTAGCTATCGTGGAGCAAATACTGTGAGTGCGGGAA-CTTTCCTAGAC-TCCCTCTTCCCTCAGCCTGCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2896765 73 + 4466143 -------CACATGTAGCTATCGTGGAGCAAACACTGTGAGGGCAGGAA-CTTTCCTAGAC-TCCCTCTTCCCTCAGCCTGCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1599655 80 + 5364348 TGAAATGCACATGTAGCTATCATGGAGCAACTGCTGTGAGGGCAGGAA-CTTTCCTAGAC-TCCCTCTGCCGTCAGCCTGCC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9481590 81 - 31815103 TAACATTCACACATGGCGATAATGGGACAAATACTACGAATGCAGGAATTTTCCCTAGAC-CCCCTCTTCCCTCAGCCTGCC i micMur3.chr21 C 0 I 317 s otoGar3.GL873618 4320954 81 + 7922563 TGACGTTCACTTGTAGCAATAGTGGGACAGATACTACAAATGCAAGAA-TATCCCTACACGTCCCTCTTCCCTCAGCATGCC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33174577 78 - 38964690 TAAAATAGACACCCAGCTACAGTGAAACAAATATTATTAATGTGGAGG-TGGCCCTTGAC---ACTCCCCCCTCAGCCTGCC i canFam3.chr26 C 0 I 11 s dasNov3.JH568189 856621 75 - 1116856 TGAAGTCCACATGTAGCTGGAGTGGGACAAGTGTTAGGAACCCA-----TGTTCACAGAC--CTCCCTTCCCTCAGCCTGCC i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124818851 200 + 151834684 I e proCoq1.NW_012154285v1 6735663 395 - 9870158 I a score=904519.000000 s hg38.chr12_KI270834v1_alt 89688 91 + 119498 AGGG---------------AGCACTG-----------------------------------------------------AAATTGTCA---------------------------------------GCCTA---------CCCCTAGT---CCAATTCCAACATCTACCCTCTCTCTTAA-AGAGGAGGGGTTC---TAGCTTAC-G----GGAGAGG s panTro5.chr12 127375248 91 + 137163284 AGGG---------------AGCACTG-----------------------------------------------------AAATTGTCA---------------------------------------GCCTA---------CCCCTAGT---CCAATTCCAACATCTACCCTCTCTCTTAA-AGAGGAGGGGTTC---TAGCTTAC-G----GGAGAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125725555 91 + 135337776 AGGG---------------AGCACTG-----------------------------------------------------AAATTGTCA---------------------------------------GCCTA---------CCCCTAGT---CCAATTCCAACATCTACCCTCTCTCTTAA-AGAGGAGGGGTTC---TAGCTTAC-G----GGAGAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8239178 89 - 8369578 AGGG---------------AGCACTG-----------------------------------------------------AAATTGTCA---------------------------------------GCCTA---------CCCCTAGT---CCGATTCCAACATCTACC--CTCTCTTAA-AGAGGAGGGGTTC---TAGCTTAC-G----GGAGAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97897572 91 + 106955855 AGGG---------------AGCACTG-----------------------------------------------------AAATTGTCA---------------------------------------GCCTA---------CCCCTAGT---CCAATTCCAACATCTACCCTCTCTCTTAA-AGAGGAGGGGTTC---TAGCTTAC-G----GGAGAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124011804 92 + 133663169 AGGG---------------AGCACTG-----------------------------------------------------AAATTGTCA---------------------------------------GCCTA---------CCCCTAGT---CTAATTCCAACACCTACCCTGTTTCTTAA-AGAGAAGGGTTTC---TAGCTTACAG----GGGGAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128259894 92 + 137757926 AGGG---------------AGCACTG-----------------------------------------------------AAATTGTCA---------------------------------------GCCTA---------CCCCTAGT---CTAATTCCAACACCTACCCTGTTTCTTAA-AGAGAAGGGGTTC---TAGCTTACAG----GGGGAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10658564 92 - 16319837 AGGG---------------AGCACTG-----------------------------------------------------AAATTGTCA---------------------------------------GCCTA---------CCCCTAGT---CTAATTCCAACACCTACCCTGTTTCTTAA-AGAGAAGGGGTTC---TAGCTTACAG----GGGGAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12282209 90 + 20526591 AGGG---------------AGCACTG-----------------------------------------------------ACATTGTCA---------------------------------------GCCTA---------CCCCTAGT---CTAATTCCAACACCTACCCTGTCTCTTAA-AGAGAAGGGGTTC---TAGCTTACA------GGGAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119254142 92 + 128539186 AGGG---------------AGCACTG-----------------------------------------------------AAATTGTCA---------------------------------------GCCTA---------CCCCTAGT---CTAATTCCAACACCTACCCTGTCTCTTAA-AGAGGAGGGGTTC---TAGCTTACAG----GGGAAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 596228 92 + 6255621 AGGG---------------AGCACTG-----------------------------------------------------ACATTGTCA---------------------------------------GCCTA---------CCCCTAGT---CTAATTCCAACACCTACCCTGTCTCTTAA-AGAGAAGGGGTTC---TAGCTTACAG----GGGGAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4631801 92 - 8658521 AGGG---------------AGCACTG-----------------------------------------------------AAATTGTCA---------------------------------------GCCTA---------CCCCTAGT---CTACTTCCAACACCTACCCTGTCTCTTAA-AGAGAAGGGGTTC---TAGCTTACAG----GGAGAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114833525 91 + 124281992 AGGG---------------AGTGCTG-----------------------------------------------------AAATTGTCA---------------------------------------GCCCA---------CTCCTAGC---ACAATTCCAGTGCCCAC-CTGTCTCTTAA-AGGGGAGGGGTTC---TAGCTCACAG----GGAGAGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 477796 92 - 9212255 AGGG---------------AGCGCTG-----------------------------------------------------AAATTGTCC---------------------------------------GCCCG---------CTCCTGGC---CCAACTCCAATGTCTACGCTGTCTCTTAA-AGGGGAAGGGTTC---TAGCTTACAG----GGAGAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2896838 92 + 4466143 AGGG---------------AGCGCTG-----------------------------------------------------AAATTGTCA---------------------------------------GCCTG---------CTCCTAGC---CCAATTCCAATGCCTACCCTGTCTCTCAA-AGGGGAGGGGTTC---TAGCTTACAG----GGAGAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1599735 91 + 5364348 AGGG---------------AGCGCTG-----------------------------------------------------AAATTGTCA---------------------------------------GCCCA---------CTCCTAGC---CCCATTCCAATGCCTACCCTGTCTCTTAA-AGGGGAGGGGTTC---TAGGTTACAG----GG-GAGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4321035 98 + 7922563 AGAG---------------AGTTGTG-----------------------------------------------------AAATTGCCA---------------------------------------GCCAA--TTCTAG-CCCCCAAT---CTGATTCCAACTCCCACCCTGTCTCTTAA-AGAGGAAAGATTC---TAGCTTATGG----GAGGGGG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33174666 209 - 38964690 AGGGCCTGTCCTAGCCCCCAGCCCTGCTCCCCCTACCACCTTCTTCatatatatatatatatatatTTaatttaaattcaatttgccaacattcatttgctcattccataaagtgccctcctcagtggccgt---------cacccagttaccccatcccctcccccacctcctctcTCTT-GGCGGGGAGGCTCAGTTAGTGAGCAGAATAAAAGAGG i canFam3.chr26 I 11 C 0 s dasNov3.JH568189 856696 100 - 1116856 AAAG---------------AGTTCTG-----------------------------------------------------AAA-TACCA---------------------------------------GCTCAATTCCTCGTCCCCCAGG---CCCGCTCTGTCTCCCTCCCCATCTCTTAAGAAAGGAAGGATTT---TAGCTT-CAG----GGAAAGG i dasNov3.JH568189 C 0 I 121 e micMur3.chr21 9481671 317 - 31815103 I e mm10.chr5 124818851 200 + 151834684 I e proCoq1.NW_012154285v1 6735663 395 - 9870158 I a score=87558.000000 s hg38.chr12_KI270834v1_alt 89779 9 + 119498 GGCTGAGG--A------------------------------- s panTro5.chr12 127375339 9 + 137163284 GGCTGAGG--A------------------------------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125725646 9 + 135337776 GGCTGAGG--A------------------------------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8239267 9 - 8369578 GGCTGAGG--A------------------------------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97897663 9 + 106955855 GGCTGAGG--A------------------------------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124011896 9 + 133663169 GGCTGAGG--A------------------------------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128259986 9 + 137757926 GGCTGAGG--A------------------------------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10658656 9 - 16319837 GGCTGAGG--A------------------------------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12282299 9 + 20526591 GGCTGAGG--A------------------------------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119254234 9 + 128539186 GGCTGAGG--A------------------------------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 596320 9 + 6255621 GGCTGAGG--A------------------------------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4631893 9 - 8658521 GGCTGAGG--A------------------------------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114833616 9 + 124281992 AGCTGAGG--A------------------------------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 477888 9 - 9212255 GGCTGAGG--A------------------------------- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2896930 9 + 4466143 GGCTGAGG--A------------------------------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1599826 9 + 5364348 GGCTGAAG--A------------------------------- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4321133 11 + 7922563 GAGTGAAGGAA------------------------------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33174875 9 - 38964690 GCCCAGGG--A------------------------------- i canFam3.chr26 C 0 I 220 s dasNov3.JH568189 856917 40 - 1116856 GTCTGAGG--GCGAAGCAGACGTGTTGGTGGGCTGCACTCGA i dasNov3.JH568189 I 121 C 0 e micMur3.chr21 9481671 317 - 31815103 I e mm10.chr5 124818851 200 + 151834684 I e proCoq1.NW_012154285v1 6735663 395 - 9870158 I a score=756274.000000 s hg38.chr12_KI270834v1_alt 89788 72 + 119498 ATCCCCTTC---------------------CTTTCCTCTCTACC---------------------CTGTTTGAGCAAGATCCTGCCCTGAGCCTGGACCTCAT---------GGTGTATATGC s panTro5.chr12 127375348 72 + 137163284 ATCCCCTTC---------------------CTTTCCTCTCTACC---------------------CTGTTTGAGCAAGATCCTGCCCTGAGCTTGGACCTCAT---------GGTGTATATGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125725655 72 + 135337776 ATCCCCTTC---------------------CTTTCCTCTCTACC---------------------CTGTTTGAGCAAGATCCTGCCCTGAGCTTGGACCTCAT---------GGTGTATATGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8239276 72 - 8369578 ATCCCCTTC---------------------CTTTCCTCGCTGCC---------------------CTGTTTGAGCAAGATCCTGCCCTGAGCCTGGACCTCAT---------GGTGTATATGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97897672 72 + 106955855 ATCCCCTTC---------------------GTTTCCTTTCCACC---------------------CTGTTTGAGCAAGATCCTGCCCTGAGCCTGGACCTCAT---------GGTGTATACGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124011905 72 + 133663169 ATCCCCTTC---------------------CTTTCCTCTCCACC---------------------CTGTTTGAGCAAGATCCTGCCCTGAGTCTGGACCTCAT---------GGTGTATAGGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128259995 72 + 137757926 ATCCCCTTC---------------------CTTTCCTCTCCACC---------------------CTGTTTGAGCAAGATCCTGCCCTGAGCCTGGACCTCAT---------GGTGTATAGGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10658665 72 - 16319837 ATCCCCTTC---------------------CTTTCCTCTCCACC---------------------CTGTTTGAGCAAGATCCTGCCCTGAGCCTGGACCTCAT---------GGTGTATAGGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12282308 72 + 20526591 ATCCCCTTC---------------------CTTTCCTCTCCACC---------------------CTGTTTGAGCACGATCCTGCCCTGAGCCTGGACCTCAT---------GGTGTATAGGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119254243 71 + 128539186 ATCCCCTTC---------------------CTTTCCTCTCCACC---------------------CTGTTTGAGCAAGATCCTGCCCTGAGCCTGGACCTCA----------GGTTTATAGGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 596329 72 + 6255621 ATCCCCTTC---------------------CTTTCCTCTCCACC---------------------CTGTTTGAGCAAGATCCTGCCCTGAGCCTGGACCTCAT---------GGTGTATAGGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4631902 72 - 8658521 ATCCCCTTC---------------------CTTTCCTCTCCACC---------------------CTGTTTGAGCAAGATCCTGCCCTGAGTCTGGACCTCAT---------GGTGTATAGTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114833625 72 + 124281992 ATCCTCTTC---------------------CCTTCCTCTCCACC---------------------CTGTTTGAGCAAGATCCTGCGTTGACCTTGGACCTCAC---------GGTGTGTACAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 477897 72 - 9212255 ATCCCCTCC---------------------CTTTCCTCTCCACC---------------------CTGTTTGAGCAAGATCCTGCGTTGAGCTTGGACCTCAT---------GGTGTGTGCAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2896939 72 + 4466143 ATCCTCTTC---------------------CTTTCCTCTCCACC---------------------CTGTTTGAGCAAGATCCTGCGTTGAGCTTGGACCTCGT---------GGTGTGTACAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1599835 72 + 5364348 ATCCTCTTC---------------------CTTTCCTCTCCACC---------------------CTGTTTGAGCAAGATCCTGCGTTGAGCTTGGACCTCAT---------GGTGTGTACAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4321144 80 + 7922563 ATCCCTTTC---------------------CTTCCCCCTCTACC---------------------Ctcttcgaatgagatgctgctctgagcctgaaccacgcgggtttatgggtttatagg- i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 856957 113 - 1116856 ATCCCTTTCGAGGTCTGAGATACGTCATAGATTGTCCTGCTACTTCTTTGGGCTGCTGAGCTGTGCTGTCTGAACGAGGGGCTGCTCCGAGGCTGCGCCCCTT---------GGGTTCCTGA- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9481671 317 - 31815103 I e mm10.chr5 124818851 200 + 151834684 I e proCoq1.NW_012154285v1 6735663 395 - 9870158 I e canFam3.chr26 33174884 220 - 38964690 I a score=299095.000000 s hg38.chr12_KI270834v1_alt 89860 30 + 119498 -GT--TATA-----CCCCTTGCT----TCTCTCTTCTTTTCA s panTro5.chr12 127375420 30 + 137163284 -GT--TATA-----CCCCTTGCT----TCTCTCTTCCTTTCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125725727 30 + 135337776 -GT--TATA-----CCCCTTGCT----TCTCTCTTCTTTTCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8239348 30 - 8369578 -GT--TATA-----CCCCTTGCT----TCTCTCTTCTTTTCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97897744 30 + 106955855 -GT--TATA-----CCCCTTGCT----TCTCTCTTCTTTTCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124011977 30 + 133663169 -GT--TATA-----CCCCTTGTT----TCTCTCTTCTTTTCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128260067 30 + 137757926 -GT--TATA-----CCCCTTGTT----TCTCTCTTCTTTTCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10658737 30 - 16319837 -GT--TATA-----CCCCTTGTT----TCTCTCTTCTTTTCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12282380 30 + 20526591 -GT--TATA-----CCTCTTGTT----TCTCTCTTCTTTTCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119254314 30 + 128539186 -GT--TATA-----CCCCTTGTT----TCTCTCTTCTTTTCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 596401 30 + 6255621 -GT--TATA-----CCCCTTGTT----TCTCTCTTCTTTTCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4631974 30 - 8658521 -GT--TATA-----CCCCTTATT----TCTCTCTTCTTTTCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114833697 32 + 124281992 -GTTGTATA-----CCCCTTGCT----GCTCTCTCCTTTCCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 477969 32 - 9212255 -GTTATATA-----CCCCTTGCT----GCTCTCTTCTTTCCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2897011 32 + 4466143 -GTTATCTA-----CCCCTCGCT----GCTCCCTTCTTTCCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1599907 32 + 5364348 -GTTCTATA-----CCCCTTGCT----GCTCTCTTCTTTCCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4321224 34 + 7922563 -gt--tata-----CACCTTGCTTTTCTCTTTCTTCTTTTTA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124819051 22 + 151834684 -GT--TTTG-----TCCTATGCT----------TGCTTTC-- i mm10.chr5 I 200 C 0 s dasNov3.JH568189 857070 32 - 1116856 GTT--TATACTGCCCCGCTTGCC----TCCCCCCTCCT---- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9481671 317 - 31815103 I e proCoq1.NW_012154285v1 6735663 395 - 9870158 I e canFam3.chr26 33174884 220 - 38964690 I a score=913480.000000 s hg38.chr12_KI270834v1_alt 89890 91 + 119498 CCTCTGGCCCCCTCCAAG-TTCCTGGCCCATCC----ACTTCCCACTTCCAAGCCATTCTCCCCTTATATTTGGCAGGGCCACAGTTAAAC--GTGGG s panTro5.chr12 127375450 91 + 137163284 CCTCTGGCCCCCTCCAAG-TTCCTGGCCCATCC----ACTTCCCACTTCCAAGCCATTCTCCCCTTATATTTGGCAGGGCCACAGTTAAAC--GTGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125725757 91 + 135337776 CCTCTGGCCCCCTCCAAG-TTCCTGGCCCATCC----ACTTCCCACTTCCAAGCCATTCTCCCCTTATATTTGGCAGGGCCACAGTTAAAC--GTGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8239378 91 - 8369578 CCTCTGGCCCCCTCCAAG-TTCCTGGCCCATCC----ACTTCCCACTTCCAAGCCATTCTCCCCTTATATTTGGCAGGGCCACAGTTAAAC--GTGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97897774 93 + 106955855 CCTCTGGCCCCCTCCAAG-TTCCTGGCCCATCC----ACTTCCCACTTCCAAGCCATTCTCCCCTTATATTTGTCAGGGCCACAGTTAAACATGTGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124012007 92 + 133663169 CCTCTGG-CCCCTCCAAG-TTCCTGGCTCATCC----ACTTCCCACTTCCAAGCCATTCTCCCTTTATATTTGGCAGGGCCACAGTTAAACACGCGGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128260097 92 + 137757926 CCTCTGG-CCCCTCCAAG-TTCCTGGCTCATCC----ACTTCCCACTTCCAAGCCATTCTCCCTTTATATTTGGCAGGGCCACAGTTAAACACGCGGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10658767 92 - 16319837 CCTCTGG-CCCCTCCAAG-TTCCTGGCTCATCC----ACTTCCCACTTCCAAGCCATTCTCCCTTTATATTTGGCAGGGCCACAGTTAAACACGCGGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12282410 92 + 20526591 CCTCTGG-CCCCTCCAAG-TTCCTGGCTCATCC----ACTTCCCACTTCCAAGCCGTTCTCCCTTTATATTTGGCAGGACCACAGCTAAACATGCGGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119254344 92 + 128539186 CCTCTGG-CCCCTCTAAG-TTCCTGGCTCATCC----ACTTCCCACTTGCAAGCCATTCTCCCTTTATATTTGGCAGGGCCACAGTTAAACATGCGGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 596431 92 + 6255621 CCTCTGG-CCCCTCCAAG-TTCCTGGCTCATCC----ACTTCCCACTTCCAAGCCATTCTCCCTTTATATTTGGCAGGGCCACAGTTAAACATGCGGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4632004 93 - 8658521 CCTCTGGCCCCCTCGAAG-TTCCTGGCTCATCC----ACTTCCCACTTCCAAGCCATTCTCCCTTTATATTTGGCAGGGCCACAGTTAAACATGCGGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114833729 91 + 124281992 CCTCTGG-CCCCTCCAAG-TTCCTGGCTCATCC----ACTTCCCACTTCCAAGCCC-TCCCTGCTTGTATTTGGCAGGGCCACAGTTAAACATGCCGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 478001 92 - 9212255 CCTCTGG-CCCCTCTAGG-TTCCTGGCTCATCC----GCTTCCCACTTCCAAGCCCTTCCCTGGTTATATTTGGCAGGGCCACAGTTAAACATGCTGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2897043 92 + 4466143 CCTCTGG-CCCCTCCAAG-TTCCTGGCTCATCT----ACTTCTCACTTCCAAGCCCTTCCCTGGTTATATTTGGCAGGGCCGCAGTTAAACATGCTGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1599939 92 + 5364348 CCTCTGG-CCCCTCCAAG-TTCCTGGCTCATCC----ACTTCCCACTTCCAAGCCCTTCCCCGCTTATATTTGGCAGGGCCACAGTTAAACATGCTGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4321258 61 + 7922563 -CTCTGA-CTCCCTCAAG-TTCCTAACTCATTA----TCTCCCCCCTTACAAGGCCTTCCCCTTCTGA------------------------------ i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124819073 34 + 151834684 ---CTGG-CCCTT------------------------GCTTCCCACTTG-------------------ACCTGGCACACCC----------------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33175104 81 - 38964690 TTTCTGG-CTTCTGTGGGCCTCCTGGCCTCCCTTGAGGCTTCCC---CCAGAGGCGCTCTCCCCATGTGTGTGCCGAGGACACAG------------- i canFam3.chr26 I 220 C 0 s dasNov3.JH568189 857102 88 - 1116856 CCTCCTT-CCCTTCTGGG--TCCTGACT-GTTC----ACT-CCTGCCTCTAAGGCCTT-TCCCCTTACACTTGGCAAGGACACCGGTAAGCATGCTGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9481671 317 - 31815103 I e proCoq1.NW_012154285v1 6735663 395 - 9870158 I a score=322150.000000 s hg38.chr12_KI270834v1_alt 89981 25 + 119498 CTTTCAGCATCTGCCT---CCCTTCTCT s panTro5.chr12 127375541 25 + 137163284 CTTTCAGCATCTGCCT---CCCTTCTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125725848 25 + 135337776 CTTTCAGCATCTGCCT---CCCTTCTCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8239469 25 - 8369578 CTTTCAGCATCTGCCT---CCCTTCTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97897867 25 + 106955855 CTTTCAGCATCTGCCT---CCCTTCTCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124012099 25 + 133663169 CTTTCAGCATCTGCCT---CCCCTCTCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128260189 25 + 137757926 CTTTCAGCATCTGCCT---CCCCTCTCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10658859 25 - 16319837 CTTTCAGCATCTGCCT---CCCCTCTCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12282502 25 + 20526591 CTTTCAGCATCTGCCT---CCCCTCTCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119254436 25 + 128539186 CTTTCAGCATCTGCCT---CCCCTCTCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 596523 25 + 6255621 CTTTCAGCATCTGCCT---CCCCTCTCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4632097 25 - 8658521 CTTTCAGCATCTGCCT---CCACTCTCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114833820 25 + 124281992 CTTTCCGCATCTGCCT---CCCCTCTCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 478093 25 - 9212255 GTTTCCGCATCTGCCT---CCCCTCTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2897135 25 + 4466143 GTTTCTGCATCTGCCT---CCTCTCTCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1600031 25 + 5364348 GCTTCCGCATCTGCCT---CCCCTCTCT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6736058 25 - 9870158 CTTTCAGCATCTGCTT---CTCCTCTCT i proCoq1.NW_012154285v1 I 395 C 0 s otoGar3.GL873618 4321319 25 + 7922563 CTTTCACCTTCTGCTT---TTCCTCTCT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124819107 18 + 151834684 ----CACCTCCTGCCT---CTCACC--- i mm10.chr5 C 0 C 0 s canFam3.chr26 33175185 24 - 38964690 ----CACCCTGTGCCTACCACCCTGTCT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 857190 22 - 1116856 ---CCCCCGCCATCCT---CCCTTCTGT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9481671 317 - 31815103 I a score=5696749.000000 s hg38.chr12_KI270834v1_alt 90006 294 + 119498 TCCAGGTCGCTTCCTTTAATGACCCTGACTTCCTCAAGCAGCTAGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCGCGATGTTGATGAATACATCGATCCTGTGATTGACAACGTCTTAGAAAAAAATATAAAAGTCTCCCAAGGACGGCAGTTTATTATCCTGGGAGACAAGGAAGTGGACTATGATTCAAATTTCAGACTGTACCTGAACACCAAGCTGGCCAATCCCAGATATTCCCCATCCGTGTTTGGGAAAGCTATGGTGATCAATTACACTGGTAAGAATG s panTro5.chr12 127375566 294 + 137163284 TCCAGGTCGCTTCCTTTAATGACCCTGACTTCCTCAAGCAGCTAGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCGTGATGTTGATGAATACATCGATCCTGTGATTGACAATGTCTTAGAAAAAAATATAAAAGTCTCCCAAGGACGGCAGTTTATTATCCTGGGAGACAAGGAAGTGGACTATGATTCAAATTTCAGACTGTACCTGAACACCAAGCTGGCCAATCCCAGATATTCCCCATCCGTGTTTGGGAAAGCTATGGTGATCAATTACACTGGTAAGAATG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125725873 294 + 135337776 TCCAGGTCGCTTCCTTTAATGACCCTGACTTCCTCAAGCAGCTAGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCGTGATGTTGATGAATACATCGATCCTGTGATTGACAATGTCTTAGAAAAAAATATAAAAGTCTCCCAAGGACGGCAGTTTATTATCCTGGGAGACAAGGAAGTGGACTATGATTCAAATTTCAGACTGTACCTGAACACCAAGCTGGCCAATCCCAGATATTCCCCATCCGTGTTTGGGAAAGCTATGGTGATCAATTACACTGGTAAGAATG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8239494 294 - 8369578 TCCAGGTCGCTTCCTTTAATGACCCTGACTTCCTCAAGCAGCTAGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCGTGATGTTGATGAATACATCGATCCTGTGATTGACAACGTCTTAGAAAAAAATATAAAAGTCTCCCAAGGACGGCAGTTTATTATCCTGGGAGACAAGGAAGTGGACTATGATTCAAATTTCAGACTGTACCTGAACACCAAGCTGGCCAATCCCAGATATTCCCCATCCGTGTTTGGGAAAGCTATGGTGATCAATTACACTGGTAAGAATG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97897892 294 + 106955855 TCCAGGTCGCTTCCTTTCACGACCCTGACTTCCTCAAGCAGCTGGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCGCGATGTTGATGAATACATCGATCCTGTGATTGATAACGTCTTAGAAAAAAATATAAAAATCTCCCAAGGACGGCAGTTTATTATCCTGGGAGACAAGGAAGTTGACTATGATTCAAATTTCAGACTGTACCTAAACACCAAGCTGGCCAATCCCAGATATTCCCCATCCGTGTTTGGGAAAGCTATGGTGATCAATTACACTGGTAAGAACG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124012124 294 + 133663169 TCCAGGTCGCTTCCTTTAACGACCCTGACTTCCTCAAGCAGCTAGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCGCGATGTTGATGAATACATCGATCCTGTGATTGATAACGTCTTAGAAAAAAATATAAAAGTCTCCCAAGGACGGCAGTTTATTATCCTGGGAGACAAGGAAGTTGACTATGATTCAAATTTCAGACTGTACCTAAACACCAAGCTGGCCAATCCCAGATACACCCCATCCGTGTTTGGGAAAGCTATGGTCATCAATTACACCGGTAAGAATG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128260214 294 + 137757926 TCCAGGTCGCTTCCTTTAACGACCCTGACTTCCTCAAGCAGCTAGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCGCGATGTTGATGAATACATCGATCCTGTGATTGATAACGTCTTAGAAAAAAACATAAAAGTCTCCCAAGGACGGCAGTTTATTATCCTGGGAGACAAGGAAGTTGACTATGATTCAAATTTCAGACTGTACCTAAACACCAAGCTGGCCAATCCCAGATACACCCCATCCGTGTTTGGGAAAGCTATGGTCATCAATTACACCGGTAAGAATG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10658884 294 - 16319837 TCCAGGTCGCTTCCTTTAACGACCCTGACTTCCTCAAGCAGCTAGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCGCGATGTTGATGAATACATCGATCCTGTGATTGATAACGTCTTAGAAAAAAACATAAAAGTCTCCCAAGGACGGCAGTTTATTATCCTGGGAGACAAGGAAGTTGACTATGATTCAAATTTCAGACTGTACCTAAACACCAAGCTGGCCAATCCCAGATACACCCCATCCGTGTTTGGGAAAGCTATGGTCATCAATTACACCGGTAAGAATG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12282527 294 + 20526591 TCCAGGTCGCTTCCTTTAACGACCCTGACTTTCTCAAGCAGCTAGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCGCGATGTTGATGAATACATCGATCCTGTGATTGATAACGTCTTAGAAAAAAATATAAAAGTCTCCCAAGGACGGCAGTTTATTATCCTGGGAGACAAGGAAGTTGACTATGATTCAAATTTCAGACTGTACCTAAACACCAAGCTGGCCAATCCCAGATACTCCCCATCCGTGTTTGGGAAAGCTATGGTCATCAATTACACCGGTAAGAATG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119254461 294 + 128539186 TCCAGGTCGCTTCCTTTAACGACCCTGACTTCCTCAAGCAGCTAGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCGCGATGTTGATGAATACATCGATCCTGTGATTGATAACGTCTTAGAAAAAAATATAAAAGTCTCCCAAGGACGGCAGTTTATTATCCTGGGAGACAAAGAAGTTGACTATGATTCAAATTTCAGACTGTACCTAAACACCAAGCTGGCCAATCCCAGATACTCCCCATCCGTGTTTGGGAAAGCTATGGTCATCAATTACACCGGTAAGAATG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 596548 294 + 6255621 TCCAGGTCGCTTCCTTTAACGACCCTGACTTCCTCAAGCAGCTAGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCGCGATGTTGATGAATACATCGATCCTGTGATTGATAACGTCTTAGAAAAAAATATAAAAGTCTCCCAAGGACGGCAGTTTATTATCCTGGGAGACAAGGAAGTTGACTATGATTCAAATTTCAGACTGTACCTAAACACCAAGCTGGCCAATCCCAGATACTCCCCATCCGTGTTTGGGAAAGCTATGGTCATCAATTACACCGGTAAGAATG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4632122 294 - 8658521 TCCAGGTCGCTTCCTTTAACGACCCTGACTTCCTCAAGCAGCTAGAGATGTCCATAAAGTATGGGACCCCTTTCCTGTTCCGTGATGTTGATGAATACATCGATCCTGTGATTGATAACGTCTTAGAAAAAAATTTAAAAGTCTCCCAAGGACGGCAGTTTATTATCCTGGGAGACAAGGAAGTTGACTATGATTCAAATTTCAGACTTTACCTAAACACCAAGCTGGCCAATCCCAGATACTCCCCATCTGTGTTTGGGAAAGCTATGGTCATCAATTACACCGGTAAGAATG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114833845 294 + 124281992 TCCAGGTTGCTTCCTTTAACGACCCTGACTTCCTCAAGCAGCTGGAGATGTCCATAAAGTACGGGACCCCCTTCCTGTTCCACGATGTTGATGAGTACATCGACCCTGTGATCGACAATGTCTTAGAAAAAAACATTAAAGTCTCCCAAGGACGGCAGTTTATCATCCTGGGAGACAAGGAAGTTGACTATGATTCAAATTTCAGACTGTATCTAAACACCAAGCTGGCCAATCCCAGCTATTCCCCGTCCGTGTTTGGGAAAGCTATGGTGATCAATTATACGGGTGAGAATG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 478118 294 - 9212255 TCCAGGTCTGTTCCTTTAACGACCCTGACTTCCTCAAGCAGCTGGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCACGATGTGGATGAATACATCGATCCTGTGATTGATAACGTCTTAGAAAAAAATATAAAAGTCTCCCAAGGACGGCAGTTTATCATCCTGGGAGACAAGGAAGTTGACTATGATTCAAATTTCAGACTGTATCTAAACACCAAGCTGGCCAATCCCAGATATTCCCCATCCGTGTTTGGGAAAGCCATGGTGATCAACTACACGGGTAAGAATG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2897160 294 + 4466143 TCCAGGTCGCTTCCTTTAACGACCCTGACTTCCTCAAGCAGCTGGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCACGATGTTGATGAATACATCGATCCTGTGATTGATAACGTCTTAGAAAAAAATATAAAAGTCTCCCAAGGACGGCAGTTTATCATCCTGGGAGACAAGGAAGTTGACTATGATTCAAATTTCAGACTGTATCTAAACACCAAGCTGGCCAATCCCAGATATTCCCCATCCGTGTTTGGGAAAGCCATGGTGATCAATTACACAGGTAAGAATG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1600056 292 + 5364348 TCCAGGTCGCTTCCTTTAACGACCCTGACTTCCTCAAGCAGCTGGAGATGTCCATAAAGTATGGGACCCCTTTCCTGTTCCAGGATGTTGATGAATACATCGATCCTGTGATTGATAACGTCTTAGAAAAAAATATAAAAGTCTCCCAAGGACGGCAGTTTATCATCCTGGGAGACAAGGAAGTTGACTATGATTCAAATTTCAGACTGTATCTAAACACCAAGCTGGCCAATCCCAGATATTCCCCATCCGTGTTTGGGAAAGCTATGGTGATCAATTACACGGGTAAGAA-- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9481988 294 - 31815103 TCCAGGTTGCTTCCTTCAATGACCCCGACTTCCTCAAGCAGCTGGAGATGTCCATAAAGTACGGGACTCCTTTCCTGTTCCACGACGTCGACGAATACATCGATCCTGTGATTGATAACGTCTTGGAGAAGAACATAAAGTTCTCCCAGGGACGGCAGTTTATCATCCTGGGAGACAAGGAAGTCGACTACGACTCGAATTTCAGGCTGTACCTGAACACCAAGCTGGCCAATCCCAGATACGGCCCGTCCGTGTTTGGGAAAGCCATGGTGATCAACTACACCGGTGAGAATG i micMur3.chr21 I 317 I 594 s proCoq1.NW_012154285v1 6736083 294 - 9870158 TCCAGGTTGCTTCCTTCAATGACCCCGACTTCCTCAAGCAGCTGGAGATGTCCATAAAGTACGGGACTCCTTTCCTGTTCCACGACGTTGACGAATACATCGACCCTGTGATTGATAACGTCTTAGAGAAAAACATAAAATTCTCCCAAGGACGGCAGTTTATTATACTGGGAGACAAGGAGGTTGACTACGATCCAAATTTCAGGCTGTACCTAAACACCAAGCTGGCCAACCCCAGATACGGCCCGTCCGTGTTCGGGAGAGCCATGGTGATCAATTACACCGGTGAGGATG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4321344 294 + 7922563 TCCAGGTTGCTTCCTTTAATGACCCTGACTTCCTCAAGCAGCTAGAGATGTCCATAAAGTATGGGACTCCTTTCCTGTTCCATGATGTTGACGAATACATTGATCCTGTGATTGATAACGTCTTAGAAAAAAATATAAAAGTCACCCAAGGACGGCAGTTTATTATCCTGGGAGACAAGGAAGTTGACTATGATTCAAACTTCAGGCTGTATCTAAACACCAAGATGGCCAACCCCAGATATTCCCCCTCAGTGTTTGGGAAAGCCATGGTGATCAATTATACTGGTGAGAATG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124819125 294 + 151834684 TGCAGGTTGCTTCCTTCAATGACCCCGACTTCCTGAAGCAGCTCGAGATGTCCATAAAGTATGGGACCCCCTTCCTGTTCCACGACGTGGATGAGTACATCGACCCTGTGATTGACAGCGTCCTGGAGAAGAACATCAAGACCTCCCAAGGCCGCCAGTTCATCATTCTGGGGGACAAGGAGGTTGACTATGACTCGAATTTCCGGCTGTACCTCAATACCAAGCTGGCCAATCCTAGATACTCCCCATCGGTGTTTGGGAAGGCCATGGTCATCAACTATACTGGTAAGAAGG i mm10.chr5 C 0 C 0 s canFam3.chr26 33175209 294 - 38964690 TCCAGGTGGCTTCCTTTAACGACCCTGACTTCCTGAAGCAGCTCGAGATGTCCATAAAGTATGGGACCCCTTTCCTGTTCCATGATGTGGACGAGTACATTGATCCTGTGATTGATAACGTCTTGGAGAAGAATATCAAAGTCACCCAAGGACGCCAGTTCATCATCCTGGGGGATAAGGAAGTGGATTATGACTCAAATTTCCGACTGTACCTAATCACTAAGCTGGCCAATCCCAGATACACCCCATCTGTGTTTGGGAAGGCCATGGTCATCAACTACACGGGTGAGGATG i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 857212 294 - 1116856 TCCAGGCCGCCTCCTTCAACGACCCTGACTTCCTCAAGCAGCTGGAAATGGCCATAAAGTATGGGACTCCATTCCTGTTCCATGATGTTGATGAATATATTGATCCAGTGATTGATAATGTCTTAGAAAAGAATATAAAAGTCGCCCAAGGACGGCAGTTTATCATACTGGGAGACAAGGAAGTTGACTATGATATGAATTTCAGACTGTACCTAAATACCAAGTTGGCCAATCCAAGATATTCCCCGTCTGTGTTTGGGAAAGCAATGGTGATCAATTATACTGGTAAGAGTG i dasNov3.JH568189 C 0 C 0 a score=67294.000000 s hg38.chr12_KI270834v1_alt 90300 5 + 119498 TGTAG s panTro5.chr12 127375860 5 + 137163284 TGTAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726167 5 + 135337776 TGTAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8239788 5 - 8369578 TGTAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898186 5 + 106955855 TGTAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124012418 5 + 133663169 TGTAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128260508 5 + 137757926 TGTAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10659178 5 - 16319837 TGTAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12282821 5 + 20526591 TGTAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119254755 5 + 128539186 TGTAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 596842 5 + 6255621 TGTAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4632416 5 - 8658521 TGTAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114834139 5 + 124281992 TGTAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 478412 5 - 9212255 TGTAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2897454 5 + 4466143 TGTAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1600348 5 + 5364348 TGTAG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6736377 5 - 9870158 TGTAG i proCoq1.NW_012154285v1 C 0 I 606 s otoGar3.GL873618 4321638 5 + 7922563 GGCAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124819419 5 + 151834684 GGCAG i mm10.chr5 C 0 C 0 s canFam3.chr26 33175505 2 - 38964690 TG--- i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 857506 5 - 1116856 TACAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9482282 594 - 31815103 I a score=3028009.000000 s hg38.chr12_KI270834v1_alt 90305 322 + 119498 AACCTCCACTGCTAATT----------------------------------------------------------CAGATGGTTATGAGG-----------------------------------------------------------------GAGACCGCAACCTCAGATCAAGGCATTCATGGGACATCATTTCACT---------CAGTGACCCCAGATCATTCTCTCATAGGCACATCTGGACTAGTCAGCTCTTACCAA-------TTAGGTACCACTTAGAAGG-----------TGTGAGGCC-------------ATGAGTCACCTGTCATGAGTCACGCTGAGACGGGGCCGTGGGCTTATGTGTTCACACAT--GGGGTGGGATGGGACCTCTGACTGTGGGGGCAGGAAGTTACTCTATATTCGTGTATTTAAAATACATGTTGTGATGTTGAATTT---TTTTTTTCTTCCTCTCA s panTro5.chr12 127375865 321 + 137163284 AACCTCCACTGCTAATT----------------------------------------------------------AAGATGGTTATGAGG-----------------------------------------------------------------GAGACCGCAACCTCAGATCAAGGCATTCATGGGACATCATTTCACT---------CAGTGACCCCAGATCATTCTCTCATAGGCACATCTGGACTAGTCAGCTCTTACCAA-------TTAGGTACCACTTAGAAGG-----------TGTGAGGCC-------------ATGACTCACCTGTCATGAGTCACACTGAGACGGGGCCGTGGGCTCATGTGTTCACACAT--GGGGTGGGATGGGACCTCTGACTGTGGGGGCAGGAAGTTACTCTATATTTGTGTATTTAAAATACATGTTGTGATGTTGAA-TT---TTTTTTTCTTCCTCTCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726172 321 + 135337776 AACCTCCACTGCTAATT----------------------------------------------------------AAGATGGTTATGAGG-----------------------------------------------------------------GAGACCGCAACCTCAGATCAAGGCATTCATGGGACATCATTTCACT---------CAGTGACCCCAGATCATTCTCTCATAGGCACATCTGGACTAGTCAGCTCTTACCAA-------TTAGGTACCACTTAGAAGG-----------TGTGAGGCC-------------ATGAGTCACCTGTCATGAGTCACACTGAGACGGGGCCGTGGGCTCATGTGTTCACACAT--GGGGTGGGATGGGACCTCTGACTGTGGGGGCAGGAAGTTACTCTATATTTGTGTATTTAAAATACATGTTGTGATGTTGAA-TT---TTTTTTTCTTCCTCTCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8239793 320 - 8369578 AACCTCCACTGCTAATT----------------------------------------------------------AAGATGGTTATGAGG-----------------------------------------------------------------GAGACCGCAACCTCAGATCAAGGCATTCATGGGACATCATTTCACT---------CAGTGACCCCAGATCATTCTCTCATAGGCACATCTGGACTAGTCAGCTCTTACCAA-------TTAGGTACCACTTAGAAGG-----------TGTGAGGCC-------------ATGAGTCACCTGTCATGAGTCACGCTGAGACAGGGCCATGGGCTCATGTGTTCACACAT--GGGGTGGGATGGGACCTCTGACTGTGGGGGCAGGAAGTTACTCTATATTCGTGTATTTAAAATACATGTTGTGATGTTGAA--T---TTTTTTTCTTCCTCTCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898191 320 + 106955855 AACCTCCACTGCTAATT----------------------------------------------------------AAGATGGTTATGATG-----------------------------------------------------------------GAGACGGCAGCCTCAGATCAAGGCATTCATGGGACATCATTTCACT---------CAGTGACCCCAGATCGTTCTCTCATAGGCATATGTGGACTAGTCAGCTCTTACCAA-------TTAGGTACCACTTAGAAGG-----------TGTGAGGCC-------------ATAAGTTACCTGTCGTGAGTCATGCTGAGATGGGGCCGTGGGCTCACGTGTTCACACAC--GGGGTGGGATGGGATCTCTGTCTGTTGGGGCAGGAAGTTACTCTATATTCGTGTATTTAAAATACATGTTGTGATGCCGAA--T---TTTTTTTCTTCCTCCCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124012423 321 + 133663169 AACCTCCACTGCTAATT----------------------------------------------------------AAGATGGTTATGATG-----------------------------------------------------------------GAGACCGCAACCTGAGATCAAGGCTTTCCTGGGACGTCATTTCACT-------CACAGTGACCCCAGATCGTTCTCTCATAGGCACATCCGGGCTAGTCAGCTCTTACCGA-------TTAGGTACCACTTAGAGGG-----------TGTGAGGCT-------------ATGAGTTACCTGTCGTGAGTCATGCTGAGACGGGGCTGTGGGCTCACATGTTCACACAC---GGGTGGGATGGGACGTCTGTCTGTGGGGGCAGGAAGTTACTCTGTATTCGTGTATTTAAAATACATGTTTTGATGTTGAA--T---TTTTTTTCTTCCTCTCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128260513 321 + 137757926 AACCTCCACTGCTAATT----------------------------------------------------------AAGATGGTTATGATG-----------------------------------------------------------------GAGACCGCAACCTGAGATCAAGGCTTTCCTGGGACGTCATTTCACT-------CACAGTGACCCCAGATCGTTCTCTCATAGGCACATCCGGGCTAGTCAGCTCTTACCGA-------TTAGGTACCACTTAGAGGG-----------TGTGAGGCT-------------ATGAGTTACCTGTCGTGAGTCATGCTGAGACGGGGCTGTGGGCTCACGTGTTCACACAC---GGGTGGGATGGGACGTCTGTCTGTGGGGGCAGGAAGTTACTCTGTATTCGTGTATTTAAAATACATGTTTTGATGTTGAA--T---TTTTTTTCTTCCTCTCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10659183 321 - 16319837 AACCTCCACTGCTGATT----------------------------------------------------------AAGATGGTTATGATG-----------------------------------------------------------------GAGACCGCAACCTGAGATCAAGGCTTTCCTGGGACGTCATTTCACT-------CACAGTGACCCCAGATCGTTCTCTCATAGGCACATCCGGGCTAGTCAGCTCTTACCGA-------TTAGGTACCACTTAGAGGG-----------TGTGAGGCT-------------ATGAGTTACCTGTCGTGAGTCATGCTGAGACGGGGCTGTGGGCTCACGTGTTCACACAC---GGGTGGGATGGGACGTCTGTCTGTGGGGGCAGGAAGTTACTCTGTATTCGTGTATTTAAAATACATGTTTTGATGTTGAA--T---TTTTTTTCTTCCTCTCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12282826 321 + 20526591 AACCTCCACTGCTAATT----------------------------------------------------------AAGATGGTTATGATG-----------------------------------------------------------------GAGACCGCAACCTGAGATCAAGGCTTTCCTGGGACGTCATTTCACT-------CACAGTGACCCCAGATCGTTCTCTCATAGGCACATCCGGGCTAGTCAGCTCTTACCAA-------TTAGGTACCACTTAGAGGG-----------TGTGAGGCT-------------ATGAGTTACCTGTCGTGAGTCACGCTGAGACAGGGCTGTGGGCTCACGTGTTCACACAC---GGGTGGGATGGGACGTCTGTCTGTGGGGGCAGGAAGTTACTCTGTGTTCGTGTATTTAAAATACATGTTGTGATGTTGAA--T---TTTTTTTCTTCCTTTCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119254760 316 + 128539186 AACCTCCACTGCTAATT----------------------------------------------------------AAGATGGTTATGATG-----------------------------------------------------------------GAGACCGAAACCTGAGATCAAGG-----CTGGGATGTCATTTCATT-------CACAGTGACCGCAGATCATTCTCTCATAGGCACATCCGGGCCAGTCAGCTCTTAGCGA-------TTAGGTACCACTTAGAGGG-----------TGTGAGGCT-------------ATGAGTTACCTGTCGTGAGTCATGCTCAGTCGGGGCTGTGGGCTCACGTGTTCATACAC---GGGTGGGATGGGACGTCTGTCTGTGGGGGCAGGAAGTTACTCTGTATTCGTGTATTTAAAATACATGTTGTGATGTTGAA--T---TTTTTTTCTTCCTCTCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 596847 316 + 6255621 AACCTCCACTGCTAATT----------------------------------------------------------AAGATGGTTATGATG-----------------------------------------------------------------GAGACCGCAACCTGAGATCAAGG-----CTGGGATGTCATTTCATT-------CACAGTGACCGCAGATCGTTCTCTCATAGGCACATCCGGGCTAGTCAGCTCTTACCGA-------TTAGGTACCACTTAGAGGG-----------TGTGAGGCT-------------ATGAGTTACCTGTCGTGAGTCACGCTGAGACGGGGCTGTGGGCTCACGTGTTCACACAC---GGGTGGGATGGGACGTCTGTCTGTGGGGGCAGGAAGTTACTCTGTATTCGTGTATTTAAAATACATGTTGTGATGTTGAA--T---TTTTTTTCTTCCTTTCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4632421 321 - 8658521 AACCTCCACTACTAATT----------------------------------------------------------AAGATGGTTATGATG-----------------------------------------------------------------GAGACTGCAACCTGAGATCAAGGCTTTCCTGGGACGTCATTTCACT-------CACAGTGACCCCAGATCATTCTCTCATAGGCACATCTGGGCTTGTCAGCTCTTACTGA-------TTAGGTACCACTTAGAGGG-----------TGTGAAGCT-------------ATGAGTTACCTGTCGTGAGTCACCCTGAGATGGGGCTGTGGGCTCACGTGTTCACACGC---GGGCGGGATGGGACATCTGTCTGTGGGGGCAGGAAGTTACTCTGTATTCGTGTATTTAAAATACATGTTGTGATGTTGAA--T---TTTTTTTCTTCCTCTCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114834144 315 + 124281992 AACCTCCATTGTTTATT----------------------------------------------------------AAGGTGGTTACTGTG-----------------------------------------------------------------GAGACCACAGTCTGAGATCAAGGCTTTCATGGGATGTCATTTCACT---------CAGTGACCCCAGATCGT--TCTCACAGGCACATCTGGACTAGTCGGCTCTTAATGA-------TTAGGTACCA-TTAGAAGG-----------CGTGGGGCC-------------AGGAGTTACATGT-CTGAGGCACGCTGAGACCGGGCCA-GGACTCATGTGTTCACACGT--GGAGCGGGATGGGACCTCTGTCTGCGGGCGCAGGAAGTTACTCTATATTTGTGGATTTAAAATACAGGTTGTGATTTTGAA--T---TTTTATTCTTCCGCTCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 478417 318 - 9212255 AACCTCCATCGTTTATT----------------------------------------------------------AAGGTGGTCATTATG-----------------------------------------------------------------GAGACCACAATCGGAGATCGAGGCTTTCATGGGATTTCATTTCACT---------CAGTGACCCCAGCTCAT--TCTCATAGGCACATCTGGACTAGTTGGCTCTTAATGA-------TTAGGTACCACTTAGAAGG-----------TGTGGGGCC-------------ACGAGTTACATGTCCTGAGACACGCTGAGACCAGGCCACGGGCTCATGTGTTCACACGT--GGAATGGGATGGGACCTCTGTCTGTGGGGGCAGGAAGTTACTCTCTATTCCTGGATTTAAAATACAGGTTGTGATTTTGAA--T---TTTTATTCTTCCTGTCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2897459 318 + 4466143 AACCTCCATTGTTTATT----------------------------------------------------------AAGGTGGTTATTATG-----------------------------------------------------------------GAGACCACAATCTGAGATCAAGACTTTCATGGGATGTAATTTCACT---------CAGTGACCCCAGATCAT--TCTCATAGGCACATCTGGACTAGTCGGCTCTTAATGA-------TTAGGTACCACTTAGAAGG-----------TGTGGGGCC-------------ATGAGTTACATGTCTGGAGGCACCCTGAGACCAGGCCATGGGCTCATGTGTTCACACGT--GGAATAGGGTGGGACCTCTGTCTGTGGGGGCAGGAAGTTACTCTGTATTCGTGGATTTAAAATACAGGTTGTGATTTTGAA--T---TTTTATTCTTCCTGCAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1600353 306 + 5364348 AACCTCCATTGTTGATT----------------------------------------------------------AAGGTGGTTATTACG-----------------------------------------------------------------GAGACCACAATCTGAGATCAAGGCTTTCATGGGGTGTCATTTCACT---------CAGTGACCCCAGATCAT--TCTCATAGGCACATGTGGACTAGTCAGCTCTTAA-------------------GTTTAAAAGG-----------TGTGGGGCC-------------ATGAGTTACATGTCTTGAGGCATGCTGAGACCAGGCCATGGGTTCATGTGTTCACACCT--GGAGTGGGATGGGACCTCTGTCTGTGGGGGCAGGAAGTTACTCTGTATTCGTGGATTTAAAATACGGGTTGTGATTTTGAA--T---TTTTATTCTTCCTGCCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4321643 318 + 7922563 AGCCCCAGCTGCAAGTC----------------------------------------------------------AACCTGGTTACCACA-----------------------------------------------------------------GCGACTACAGTCTCAGATGCAGGCTTTCATGGCACGTCCTCTTGCT---------CAGCATCCCCAGATCATTCTCCTGTAGTCACAGCTTGACTCGTCAGCTCTTCCTGA--------TAAGCAGACCCCAGAAGGGTTGGGGCGTTTGGAAGGCC-------------ATGAGCTATGTGTC----------TTGAGGCTGGACCGTAGGCTTGTGTGTTTACACTT---GGAGGGTGGCAGACCTCTGTCTGCTTGGCCGGGAGGTTATCCTGTGTTTGTGTATTT-CAGTGTATATTGTGAGTCTAGG--T---TTTTCTCCTTCCCTTCA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124819424 143 + 151834684 -ATCT-GGCTGCAAA--------------------------------------------------------------------CATCCAG-----------------------------------------------------------------GAGTCTAC--CTTGAAAGCGAGGC-TTCACGGG-CATCTTGATCCC---------TGGTGGCTCCAG-----TCTCTC--------------------------------------------------CATGGAAGC-----------T------------------------------------------------------------GGGCTtttttgtt----------------------------------------------ttgttttgtttt-----------------ggttttggttttggt--t---ttggttttttca----- i mm10.chr5 C 0 I 46 s canFam3.chr26 33175507 323 - 38964690 TACCCTCAGTGGCAAAT----------------------------------------------------------GGGGTGGTCAGCATG-----------------------------------------------------------------GAGAC--CAGTCAGCAGTCAGGGCTTCCATGGGGCACTGTTTGGTTTGCTTTCCCCAGGTACCTCAGGTCATGCTCTCAGGGTCATGTCTTCATTGGTTGGTTCTTAATGATGAAGGTTTGGGTGCCCCCTAGGGAG-----------------GCA-------------GGGAGATGCGTGGCTTGGGGGCTGCTGAGTCTGGGCCATTG-CTCTTGGAAACGCACACTTGGAGTAGGGTGAGACCCCACTCTGCTGGGGCAGGACGTTATTCTGGGTTTG---------AATAGGTGGCATGATTTTAGA--TGCCCCTTCTCCTTCCTCCCA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 857511 444 - 1116856 AATGTCAGTTGcacatctggtgtgattccattcacacgaaatgtccagaacaggcaaatctatagagacagcagaagagtggttgccaggggcactggggggcaggaggattggggggtgatggtaaagggggcaggtttctttttggggCATCTGAGACCACACTCTTAGATCCAGGTCTCCCTGGGGCATCATTTCCTC---------CAG-GGTCTGAGGTCATTCTCCCTGAGTCACATCTAAACAGGTCAGTTCTTAATG--------TTGAGCCAAACCTGGAAAG-----------TCTGGGGGCCCTTTGGAGTGTAGTGAATTCCGTGTC--GGGGCCTGTGGAGACTGGACCCTCGGCTCAGGCGCATGTACTC--AGAGCAGG-TGACACGTCTGG--GCTGGGGCAGGAAGTTCCTCTGCTTCTGCA---CTGACATGTAGATCATGCTTTTG----T---TTTTCCCATTCCTTTTC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9482282 594 - 31815103 I e proCoq1.NW_012154285v1 6736382 606 - 9870158 I a score=878308.000000 s hg38.chr12_KI270834v1_alt 90627 77 + 119498 GTTGAATTCTGATAGAAATGGGATGTTATCT-CTTACATTCTCTAGGGCTGTCATGCTCCTGCTTAA-----------------------------ATAGG----CTAATT s panTro5.chr12 127376186 77 + 137163284 GTTGAATTCTGATAGAAATGGGATGTTATCT-CTTACATTCTCTAGGGTTGTCATGCTCCTGCTTAA-----------------------------ATAGG----CTAATT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726493 77 + 135337776 GTTGAATTCTGATAGAAATGGGATGTTATCT-CTTACATTCTCTAGGGTTGTCATGCTCCTGCTTAA-----------------------------ATAGG----CTAATT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240113 77 - 8369578 GTTGAATTCTGATAGAAATGGGATGTTATCT-CTTACATTCTCTAGGGTTATCATGCTCCTGCTTAA-----------------------------ATAGG----CTAATT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898511 77 + 106955855 GTTGAATTCTGATAGAAATTGGATATTCTCT-CTCAAATTCTCTAAGGTTGTCATGCTCCTGCGTAA-----------------------------ACAGG----TTAATT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124012744 77 + 133663169 GTTGAATTCTGATAGAAATTGGATGTTATCT-CTCGTATTCTCTAGGGTTGTCATGCACCTGCTTAA-----------------------------ACAGG----TTAATT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128260834 77 + 137757926 GTTGAATTCTGATAGAAATTGGATGTTATCT-GTCATATTCTCTAGGGTTGTCATGCACCTGCTTAA-----------------------------ACAGG----TTAATT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10659504 77 - 16319837 GTTGAATTCTGATAGAAATTGGATGTTATCT-CTCATATTCTCTAGGGTTGTCATGCACCTGCTTAA-----------------------------ACAGG----TTAATT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283147 77 + 20526591 GTTGAATTCTGATAGAAATTGAATGTTATCT-CTCATATTCTCTAGGGTTGTCATGCACCTGCTTAA-----------------------------ACAGG----TTAATT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255076 77 + 128539186 GTTGAATTCTGATAGAAATTGAATGTTGTCT-CTCATATTCTCTAGGGTTGTCATGCACCTGCTTAC-----------------------------ACAGG----TTAATT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597163 77 + 6255621 GTTGAATTCTGATAGAAATTGAATGTTATCT-CTCATATTCTCTAGGGTTGTCATGCACCTGCTTAA-----------------------------ACAGG----TTAATT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4632742 77 - 8658521 GTTGAATTCTGATAGAAATTGGATGTTATCT-CTCATATTCTCTAGAGTTGTCATGTACCTGCTTAA-----------------------------GCAGG----TTAATT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114834459 77 + 124281992 ATTGAATTCTGATAGAAACTGGATGTTATCT-CTCACATTCTCTAAGGTTGTCATGCACCTGCTTAA-----------------------------ACACA----TTGATT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 478735 77 - 9212255 GTTGAATTCTGATAGAAATTGGATGTTATTT-CTCACGTTCTCTAAGGTTGTCATGCACCTGCTTAA-----------------------------ACACA----TTGATT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2897777 77 + 4466143 GTTGAATTCTGATAGAAATTGGATGTTATCT-CTCACATTCTCTAAGGTTGTCATGCACCTGCTTAA-----------------------------ACACA----TTGATT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1600659 77 + 5364348 GTTGAATTCTGATAGACATTGGAGGTTACCT-CTCACATTCTCTAAGGTTGTCATGCACCTGCTTAA-----------------------------ACACA----TTGATT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4321961 110 + 7922563 ATTGAATTCTGATAGGAATGGGAAGGCACCT-CTCACGTTTTCTTGGGCTGTTACACAGCTGTTTAATAGGTGTGTGAGATGTAGTTGCCTGGTATATAGGAGCTCTCATT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33175830 67 - 38964690 GCTTAATTCTGTTAGGAA----------CCA-TTGCCACTTTCTAGGAGTGTCCTCCACCTACTTAA-----------------------------ATAGG----TTAAGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 857955 78 - 1116856 ACTGAATTCTGATAGGAATTGAGTGCCATTTCCTCACATCTTCTAGGATAGTCATACAGCTGCTTAA-----------------------------ACAGG----TTTCTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9482282 594 - 31815103 I e mm10.chr5 124819567 46 + 151834684 I e proCoq1.NW_012154285v1 6736382 606 - 9870158 I a score=130416.000000 s hg38.chr12_KI270834v1_alt 90704 11 + 119498 TGATTTGGATG s panTro5.chr12 127376263 11 + 137163284 TGATTTGGATG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726570 11 + 135337776 TGATTTGGATG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240190 11 - 8369578 TGATTTGGATG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898588 11 + 106955855 TGATTTGGATA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124012821 11 + 133663169 CAATTTGGATG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128260911 11 + 137757926 CGATTTGGATG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10659581 11 - 16319837 CGATTTGGATG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283224 11 + 20526591 CGATTTGGATG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255153 11 + 128539186 CGATTTGGATG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597240 11 + 6255621 CGATTTGGATG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4632819 11 - 8658521 CGATTTGGATG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114834536 11 + 124281992 TGATTTGGATG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 478812 11 - 9212255 TGATTTGGATG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2897854 11 + 4466143 TGATTTGTATG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1600736 11 + 5364348 TGATTTGGATG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4322071 11 + 7922563 TAATTTGAGTG i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 858033 11 - 1116856 AGGTTTGGATG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9482282 594 - 31815103 I e mm10.chr5 124819567 46 + 151834684 I e proCoq1.NW_012154285v1 6736382 606 - 9870158 I e canFam3.chr26 33175897 0 - 38964690 C a score=101192.000000 s hg38.chr12_KI270834v1_alt 90715 21 + 119498 ---TA--------CTTTCTTTTCTT---------------------------------------------------------------TTTTCtt s panTro5.chr12 127376274 8 + 137163284 ---TA--------CTTTC----------------------------------------------------------------------------T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726581 8 + 135337776 ---TA--------CTTtc----------------------------------------------------------------------------t i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240201 21 - 8369578 ---TA--------CTTTCTTTTCTT---------------------------------------------------------------TTTTCtt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898599 21 + 106955855 ---TA--------CTTTCTtttctt---------------------------------------------------------------ttttctt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124012832 21 + 133663169 ---TA--------CTTTCTTTTCTT---------------------------------------------------------------TTTTCtt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128260922 21 + 137757926 ---TA--------CTTTCTTTTCTT---------------------------------------------------------------TTTTCtt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10659592 21 - 16319837 ---TA--------CTTTCTTTTCTT---------------------------------------------------------------TTTTCtt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283235 21 + 20526591 ---TA--------CTTTCTTTTCTT---------------------------------------------------------------TTTTCtt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255164 21 + 128539186 ---TA--------CTTTCTTTTCTT---------------------------------------------------------------TTTTCtt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597251 20 + 6255621 ---TA--------Ctttcttttctt---------------------------------------------------------------ttttcg- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4632830 18 - 8658521 ---TA--------CTTTCTT---TT---------------------------------------------------------------TTTTCtt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114834547 24 + 124281992 ACCTA--------CTTTCCTTCCTT---------------------------------------------------------------TTTTCTT i calJac3.chr9 C 0 I 205 s saiBol1.JH378194 478823 24 - 9212255 ACCTA--------ctttccttcctt---------------------------------------------------------------ttttctt i saiBol1.JH378194 C 0 I 193 s cebCap1.NW_016107484v1 2897865 24 + 4466143 ACCTA--------CTTTCCTTCctt---------------------------------------------------------------ttttctt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1600747 24 + 5364348 ACCTA--------ctttccttcctt---------------------------------------------------------------ttttctt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4322082 92 + 7922563 ---TGTTTGAACTCTTTCTGTCCTTACTCTGCAGAGCAGTGTCACTGTTTTGCTGTCTGATGTTTGTCACTTTGTTGCTTTAGAGTGATttttgt i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9482282 594 - 31815103 I e mm10.chr5 124819567 46 + 151834684 I e proCoq1.NW_012154285v1 6736382 606 - 9870158 I e dasNov3.JH568189 858044 0 - 1116856 C e canFam3.chr26 33175897 0 - 38964690 C a score=16800.000000 s hg38.chr12_KI270834v1_alt 90736 2 + 119498 tt s panTro5.chr12 127376282 2 + 137163284 TT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726589 2 + 135337776 tt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240222 2 - 8369578 tt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898620 2 + 106955855 ta i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124012853 2 + 133663169 tt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128260943 2 + 137757926 tt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10659613 2 - 16319837 tt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283256 2 + 20526591 tt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255185 2 + 128539186 ct i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4632848 2 - 8658521 tt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114834776 2 + 124281992 TT i calJac3.chr9 I 205 C 0 s saiBol1.JH378194 479040 2 - 9212255 tt i saiBol1.JH378194 I 193 C 0 s cebCap1.NW_016107484v1 2897889 2 + 4466143 tt i cebCap1.NW_016107484v1 C 0 I 192 s aotNan1.NW_018491581v1 1600771 2 + 5364348 tt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4322174 2 + 7922563 tt i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9482282 594 - 31815103 I e mm10.chr5 124819567 46 + 151834684 I e proCoq1.NW_012154285v1 6736382 606 - 9870158 I e dasNov3.JH568189 858044 0 - 1116856 C e canFam3.chr26 33175897 0 - 38964690 C e manLeu1.NW_012103587v1 597271 0 + 6255621 C a score=40560.000000 s hg38.chr12_KI270834v1_alt 90738 5 + 119498 tcttt s panTro5.chr12 127376284 5 + 137163284 TCTtt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726591 5 + 135337776 tcttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240224 5 - 8369578 tcttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898622 5 + 106955855 tcttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124012855 5 + 133663169 tcttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128260945 5 + 137757926 tcttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10659615 5 - 16319837 tcttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283258 5 + 20526591 tcttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255187 5 + 128539186 tcttt i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4632850 5 - 8658521 tcttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114834778 5 + 124281992 CCCTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479042 5 - 9212255 ccctt i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1600773 5 + 5364348 tcttt i aotNan1.NW_018491581v1 C 0 I 237 s otoGar3.GL873618 4322176 5 + 7922563 ttttt i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9482282 594 - 31815103 I e mm10.chr5 124819567 46 + 151834684 I e proCoq1.NW_012154285v1 6736382 606 - 9870158 I e dasNov3.JH568189 858044 0 - 1116856 C e canFam3.chr26 33175897 0 - 38964690 C e cebCap1.NW_016107484v1 2897891 192 + 4466143 I e manLeu1.NW_012103587v1 597271 0 + 6255621 C a score=189264.000000 s hg38.chr12_KI270834v1_alt 90743 28 + 119498 ttttgtacagatggggtttgtctgtgtt s panTro5.chr12 127376289 28 + 137163284 ttttgtacagatggggtttgtctgtgtt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726596 28 + 135337776 ttttgtacagatggggtttgtctgtgtt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240229 28 - 8369578 ttttgtacagatggggtttgtctgtgtt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898627 28 + 106955855 ttatgtacagatggggttgctctgtgtt i nomLeu3.chr10 C 0 I 5 s rheMac8.chr11 124012860 28 + 133663169 tttcgtacagatggggtttctctgcgtt i rheMac8.chr11 C 0 I 5 s macFas5.chr11 128260950 28 + 137757926 tttcgtacagatggggtttctctgcgtt i macFas5.chr11 C 0 I 5 s macNem1.NW_012010578v1 10659620 28 - 16319837 tttcgtacagatggggtttctctgcgtt i macNem1.NW_012010578v1 C 0 I 5 s cerAty1.NW_012001186v1 12283263 28 + 20526591 tttcgtacagatggggtttctctgcgtt i cerAty1.NW_012001186v1 C 0 I 5 s chlSab2.chr11 119255192 28 + 128539186 tttcctacagatggggtttctctgcatt i chlSab2.chr11 C 0 I 5 s manLeu1.NW_012103587v1 597271 23 + 6255621 -----tacagatggggtttctctgcgtt i manLeu1.NW_012103587v1 C 0 I 5 s colAng1.NW_012116043v1 4632855 28 - 8658521 ttttgcacagatggggtttctctgcatt i colAng1.NW_012116043v1 C 0 I 5 s calJac3.chr9 114834783 25 + 124281992 ---TTCTCagatgaggtttctctgtgtt i calJac3.chr9 C 0 I 5 s saiBol1.JH378194 479047 25 - 9212255 ---ttctCagatgaggtttctctgtgtt i saiBol1.JH378194 C 0 I 5 s otoGar3.GL873618 4322181 28 + 7922563 ttgtttttagacagagtttcactctgtt i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9482282 594 - 31815103 I e mm10.chr5 124819567 46 + 151834684 I e proCoq1.NW_012154285v1 6736382 606 - 9870158 I e dasNov3.JH568189 858044 0 - 1116856 C e canFam3.chr26 33175897 0 - 38964690 C e aotNan1.NW_018491581v1 1600778 237 + 5364348 I e cebCap1.NW_016107484v1 2897891 192 + 4466143 I a score=22616.000000 s hg38.chr12_KI270834v1_alt 90771 2 + 119498 -------gt s panTro5.chr12 127376317 2 + 137163284 -------gt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726624 2 + 135337776 -------gt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240257 2 - 8369578 -------gt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898660 2 + 106955855 -------gt i nomLeu3.chr10 I 5 C 0 s rheMac8.chr11 124012893 2 + 133663169 -------gt i rheMac8.chr11 I 5 C 0 s macFas5.chr11 128260983 2 + 137757926 -------gt i macFas5.chr11 I 5 C 0 s macNem1.NW_012010578v1 10659653 2 - 16319837 -------gt i macNem1.NW_012010578v1 I 5 C 0 s cerAty1.NW_012001186v1 12283296 2 + 20526591 -------gt i cerAty1.NW_012001186v1 I 5 C 0 s chlSab2.chr11 119255225 2 + 128539186 -------gt i chlSab2.chr11 I 5 C 0 s manLeu1.NW_012103587v1 597299 2 + 6255621 -------gt i manLeu1.NW_012103587v1 I 5 C 0 s colAng1.NW_012116043v1 4632888 2 - 8658521 -------gt i colAng1.NW_012116043v1 I 5 C 0 s calJac3.chr9 114834813 2 + 124281992 -------gt i calJac3.chr9 I 5 C 0 s saiBol1.JH378194 479077 2 - 9212255 -------gt i saiBol1.JH378194 I 5 C 0 s cebCap1.NW_016107484v1 2898083 2 + 4466143 -------gt i cebCap1.NW_016107484v1 I 192 C 0 s aotNan1.NW_018491581v1 1601015 2 + 5364348 -------gt i aotNan1.NW_018491581v1 I 237 C 0 s otoGar3.GL873618 4322209 9 + 7922563 gccctaggt i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9482282 594 - 31815103 I e mm10.chr5 124819567 46 + 151834684 I e proCoq1.NW_012154285v1 6736382 606 - 9870158 I e dasNov3.JH568189 858044 0 - 1116856 C e canFam3.chr26 33175897 0 - 38964690 C a score=52037.000000 s hg38.chr12_KI270834v1_alt 90773 5 + 119498 ctggg s panTro5.chr12 127376319 5 + 137163284 ctggg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726626 5 + 135337776 ctggg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240259 5 - 8369578 ctggg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898662 5 + 106955855 ctggt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124012895 5 + 133663169 ctggt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128260985 5 + 137757926 ctggt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10659655 5 - 16319837 ctggt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283298 5 + 20526591 ctggt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255227 5 + 128539186 cttgt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597301 5 + 6255621 ctggt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4632890 5 - 8658521 ctggt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114834815 5 + 124281992 ctggt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479079 5 - 9212255 ctggt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898085 5 + 4466143 ctggt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601017 5 + 5364348 ctggt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4322218 5 + 7922563 CAGGC i otoGar3.GL873618 C 0 I 225 s mm10.chr5 124819613 5 + 151834684 ctggc i mm10.chr5 I 46 C 0 e micMur3.chr21 9482282 594 - 31815103 I e proCoq1.NW_012154285v1 6736382 606 - 9870158 I e dasNov3.JH568189 858044 0 - 1116856 C e canFam3.chr26 33175897 0 - 38964690 C a score=911448.000000 s hg38.chr12_KI270834v1_alt 90778 77 + 119498 ctcaaacttctgggctcaagtgatcctcctgcctctgcctcccaaagtgctgggattacaggcatgagccactgcgc s panTro5.chr12 127376324 77 + 137163284 ctcaaacttctgggctcaagtgatcctcctgcctctgcctcccaaagtgttgggattacaggcatgagccactgtgc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726631 77 + 135337776 ctcaaacttctgggctcaagtgatcctcctgcctctgcctcccaaagtgttgggattacaggcatgagccactgtgc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240264 77 - 8369578 ctcaaacttctgggctcaagtgatcctcctgcctctgcctcccaaagtgctgggattacaggcatgagccactgcgc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898667 77 + 106955855 ctcaaacgtctgggctcaagtgatcctcccgcctctgcctcccaaagtgctgggattacaggcatgagccactgcgc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124012900 77 + 133663169 ctcaaacttctgggctcgagggatcctcccgcctctgcctcccaaagtgctgggattacaggcatgagccactgtgc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128260990 77 + 137757926 ctcaaacttctgggctcgagggatcctcccgcctctgcctcccaaagtgctgggattacaggcatgagccactgtgc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10659660 77 - 16319837 ctcaaacttctgggctcgagggatcctcccgcctctgcctcccaaagtgctgggattacaggcatgagccactgtgc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283303 77 + 20526591 ctcaaacttctgggctcgagggatcctcccgcctctgcctcccaaaatgctgggattacaggcatgagccactgtgc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255232 77 + 128539186 ctcaaacttctgggctcgagggatcctcctgcctctgcctcccaaagtgctgggattagaggcgtgagccactgcgc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597306 77 + 6255621 ctcaaacttctgggctcgagggatcctcccgcctctgcctcccagagtgctgggattacaggcatgagccactgtgc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4632895 77 - 8658521 ctcaaatttctgggctcgagggatcctcccgcctcggcctcccaaagtgctgggattacaggcatgagccactgtgc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114834820 77 + 124281992 gtcaaacttctgggctcaagtgatcctcccgcctctgcctcccaaagtgctgggattacaggcatgaaccactgtgc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479084 77 - 9212255 ctcaaacttctgggctccagtgatcctcccgtctctgcctcccaaagtgctgggattacaggcatgaaccactgtgc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898090 77 + 4466143 ctcaaacttctgggctcaagtgatcctgccacctctgcctcccaaagtactgggattacaggcatgaaccactgtgc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601022 77 + 5364348 ctcaaacttctgggctcaagtgatccttccgcctctgcctcccaaagtgctgggattacaggcatgaaccactgtgc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4322448 77 + 7922563 ctcaagcttttgggctcaagagctcctcttgtctcagcttcccaagtaactgggactatagtcacctgccatgatgc i otoGar3.GL873618 I 225 I 136 s mm10.chr5 124819618 60 + 151834684 ctcgaactc---------agaaatcctcctgcctctgcctccca-agtgctgggattaaaggcgtacacc------- i mm10.chr5 C 0 C 0 e micMur3.chr21 9482282 594 - 31815103 I e proCoq1.NW_012154285v1 6736382 606 - 9870158 I e dasNov3.JH568189 858044 0 - 1116856 C e canFam3.chr26 33175897 0 - 38964690 C a score=13674.000000 s hg38.chr12_KI270834v1_alt 90855 2 + 119498 cc s panTro5.chr12 127376401 2 + 137163284 cc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726708 2 + 135337776 cc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240341 2 - 8369578 cc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898744 2 + 106955855 cc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124012977 2 + 133663169 cc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261067 2 + 137757926 cc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10659737 2 - 16319837 cc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283380 2 + 20526591 cc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255309 2 + 128539186 cc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597383 2 + 6255621 cc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4632972 2 - 8658521 cc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114834897 2 + 124281992 ca i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479161 2 - 9212255 ca i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898167 2 + 4466143 ca i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601099 2 + 5364348 ca i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9482282 594 - 31815103 I e mm10.chr5 124819678 0 + 151834684 C e proCoq1.NW_012154285v1 6736382 606 - 9870158 I e dasNov3.JH568189 858044 0 - 1116856 C e canFam3.chr26 33175897 0 - 38964690 C e otoGar3.GL873618 4322525 136 + 7922563 I a score=91771.000000 s hg38.chr12_KI270834v1_alt 90857 10 + 119498 agtcTGGGTA s panTro5.chr12 127376403 10 + 137163284 agtcTGGGTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726710 10 + 135337776 agtcTGGGTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240343 9 - 8369578 agtcT-GGTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898746 10 + 106955855 agtcTGGGCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124012979 10 + 133663169 AATCTGGGTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261069 10 + 137757926 AATCTGGGTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10659739 10 - 16319837 AATCTGGGTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283382 10 + 20526591 AATCTGGGTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255311 10 + 128539186 AATCTGGGTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597385 10 + 6255621 AATCTGGGTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4632974 10 - 8658521 agtcTGGGTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114834899 10 + 124281992 ggtcTGGGTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479163 10 - 9212255 ggtcTGGGTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898169 10 + 4466143 ggtcTGGGTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601101 10 + 5364348 ggtcTGGGTG i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33175897 10 - 38964690 AGGTTGGGTG i canFam3.chr26 C 0 C 0 e micMur3.chr21 9482282 594 - 31815103 I e mm10.chr5 124819678 0 + 151834684 C e proCoq1.NW_012154285v1 6736382 606 - 9870158 I e dasNov3.JH568189 858044 0 - 1116856 C e otoGar3.GL873618 4322525 136 + 7922563 I a score=1165936.000000 s hg38.chr12_KI270834v1_alt 90867 121 + 119498 TACTTTAAACTATGGCACCCCAGTCCGTGGA-AGCCTGGGTTTTATTTCAGTGTGTTTTT-TCCTTTTTATCTGCCACTCTGCACCACAGCATCGCTGTTTTGCTCC----TGCCTGCCACCTTGCT s panTro5.chr12 127376413 121 + 137163284 TACTTTAAACTATGGCACCCCAGTCCGTGGA-AGCCTGGGTTTTATTTTAGTGTGTTTTT-TCCTTTTTGTCTGCCACTCTGCACCACAGCATCGCTGTTTTGCTCC----TGCCTGCCACCTTGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726720 121 + 135337776 TACTTTAAACTATGGCACCCCAGTCCGTGGA-ACCCTGGGTTTTATTTTAGTGTGTTTTT-TCCTTTTTGTCTGCCACTCTGCACCATAGCATCGCTGTTTTGCTCC----TGCCTGCCACCTTGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240352 121 - 8369578 TACTTTAAACTATGGCACCCCAGTCCGTGGA-AGCCTGGGTTTTATTTCAGTGTGTTTTT-TCCTTTTTGTCTGCCACTCTGCACCACAGCATCGCTGTTTTGCTCC----TGCCTGCCACCTTGCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898756 121 + 106955855 TACTTTAAACTATGGTACCCCAGTCCGTGGA-AGCCTGGGTTTTATTTCAGTGTGTTTTT-TTCTTTTTGTCCACCACTCTGCACCACAGCATCGCTATTTTGCCCC----TGTCTGCCACCTTGCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124012989 121 + 133663169 TACTTTAAACCTTGGTACCCCAGTCCGTGGA-AGCCTGGGTTTTATTTCAGTGCATTTTT-TCCTTTTTGTCCACCACTCTGCACCACAGCATCGCTATTTTGCTCA----TGTCTGCCACCTTGCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261079 121 + 137757926 TACTTTAAACCTTGGTACCCCAGTCCGTGGA-AGCCTGGGTTTTATTTCAGTGCATTTTT-TCCTTTTTGTCCACCACTCTGCACCACAGCATCGCTATTTTGCTCA----TGTCTGCCACCTTGCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10659749 121 - 16319837 TACTTTAAACCTTGGTACCCCAGTCCGTGGA-AGCCTGGGTTTTATTTCAGTGCATTTTT-TCCTTTTTGTCCACCACTCTGCACCACAGCAACGCTATTTTGCTCA----TGTCTGCCACCTTGCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283392 121 + 20526591 TACTTTAAACCTTGGTACCCCAGTCCGTGGA-AGCCTGGGTTTTATTTCAGTGCATTTTT-TCCTTTTTGTCCACCACTCTGCACCACAGCATCGCTATTTTGCTCA----TGTCTGCCACCTTGCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255321 121 + 128539186 TACTTTAAACCTTGGTACCCCAGTCCGTGGA-AGCCTGGGTTTTATTTCAGTGCGTTTTT-TCCTTTTTGTCCACCACTCTGCACCACAGCATCGCTATTTTGCTCC----TGTCTGCCACCTTGCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597395 121 + 6255621 TACTTTAAACCTTGGTACCCCAGTCCGTGGA-AGCCTGGGTTTTATTTCAGTGCATTTTT-TCCTTTTTGTCCACCACTCTGCACCACAGCATCGCTATTTTGCTCA----TGTCTGCCACCTTGCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4632984 121 - 8658521 TACTTTAAACTATGGTACCGCAGTCCATGGA-AGCCTGGGTTTTGTTTCAGCGCATTTTT-TCCTTTTTGTCCACCACTCTGCACCACAGCATCACTATTTTGCTCA----TGTCTGCCACCTTGCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114834909 120 + 124281992 TACTTTGAACTATGG-CCCCTAATCCATGGA-AGCCTGGGTTTTCCTTCAGTGCATTTTT-T-CTTTTTGTCCATCACTCTGCACCACAGCATGGCTGTTTTGCTCT---GTGTCTGCCACCGTGCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479173 121 - 9212255 TACTTTGAACAATGGCCCCCTAATCTGTGGA-AGCCTGGGTTTTCTTTCAGTGCGTTTTT-T-CTTTTCGCCCACCACTCTGCACCACAGCGTCGCTGTTCTGCTCT---GTGCCTGCCGCTGTGCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898179 120 + 4466143 TACTTTGAACTATGG-CCCCTAATCTGTGGA-AGCCTGGGTTTTCTTTCAGTGCGTTTTT-T-CTTTTTGTCCACCACTCTGCACCACAGCGTTGCTATTTTGCTCT---GTGTCTGCCACCGTGCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601111 121 + 5364348 TACTTTGAACTATGGCCCCCTAGTCTGTGGA-AGCCTGGGTTTTCTTTCAGTGCGTTTTT-T-CTTTTTGCCCACCACTCTGCACCACAGCATCGCTGTTTTGCTCT---GTGTCTGCCACCGTGCT i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124819678 52 + 151834684 --------accattg---cccagcCTGTGGA-AGCT-------------------GTTTT-TGCTGTTTGGTCCTTAATGTGTA------------------------------------------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33175907 105 - 38964690 TGCTTTCAGCCCAGGCTCCCCAATGTGTGGG-AGCCC------------------CTGCA-TGCTTGTTGCCCACCACTCTGTAAAGGAACATCTCTGTGTTGTTTTGACGGTTTTGACCTGTTG-- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 858044 123 - 1116856 TACTTTAAACAAGGGTCCCCCAATATGGGGGCACCCTGGATCTTATTTTAGTACCTCTTCATTCTTTTTGCTCACCACTCTGTGGAGCAACAGCTCCCTTTTTGTTC----TAATGTTCACTTTATT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9482282 594 - 31815103 I e proCoq1.NW_012154285v1 6736382 606 - 9870158 I e otoGar3.GL873618 4322525 136 + 7922563 I a score=1070177.000000 s hg38.chr12_KI270834v1_alt 90988 111 + 119498 GCTCTAGAGTGACTTT--GGTGGGC-AGTGAA-TCCTCGTGCCTCT-GGCCTGCTGGCTGAGACCCGCGCTAAGCTTGTCCCG-TCACAGCAGGGCAGCGGG---AGAGACTG----------TTGTTGG- s panTro5.chr12 127376534 111 + 137163284 GCTCTAGAGTGACTTT--GGTGGGC-AGTGAA-TCCTCGTGCCTCT-GGCCTGCTGGCTGAGACCCGTGCTAAGCTTGTCCCG-TCACAGCAGGGCAGCGGG---AGAGACTG----------TTGTTGG- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726841 111 + 135337776 GCTCTAGAGTGACTTT--GGTGGGC-AGTGAA-TCCTCGTGCCTCT-GGCCTGCTGGCTGAGACCCGCGCTAAGCTTGTCCCG-TCACAGCAGGGCAGCGGG---AGAGACTG----------TTGTTGG- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240473 111 - 8369578 GCTCTAAAGTGACTTT--GGTGGGC-AGTGAA-TCCTCGTGCCTCT-GGCCTGCTGGCTGAGACCCGCGCTAAGCTTGTCCCG-TCACAGCAGGGCAGCGGG---AGAGACTG----------TTGTTGC- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898877 111 + 106955855 GCTGTAGGGTGACTTT--GGTGGGC-AGTGAA-TTCTCGTGCCTCT-GACCTGCTGGCTGAGACCCACGCTAAGCTTGTCCTG-TCACAGCAGGGCAGCGGG---AGAGACTG----------TTATTAG- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013110 111 + 133663169 GCTGTAGAGTGACATT--GGTGGGC-AGTGAA-TCCTCGTGCCTCT-AACCTGCTGTCTGAGACCCACGCTAAGCTTGTCCCA-TCACAGCAGGACAGCGGG---AGAGACCG----------TTGTCGG- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261200 111 + 137757926 GCTGTAGAGTGACATT--GGTGGGC-AGTGAA-TCCTCGTGCCTCT-AACCTGCTGTCTGAGACCCACGCTAAGCTTGTCCCA-TCACAGCAGGACAGCGGG---AGAGACCG----------TTGTCAG- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10659870 111 - 16319837 GCTGTAGAGTGACATT--GGTGGGC-AGTGAA-TCCTCGTGCCTCT-AACCTGCTGTCTGAGACCCACGCTAAGCTTGTCCCA-TCACAGCAGGACAGCGGG---AGAGACCG----------TTGTCGG- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283513 111 + 20526591 GCTGTAGAGTGACATT--GGTGGGC-AGTGAA-TCCTCGTGCCTCT-GACCTGCTCTCTGAGACCCACGCTAAGCTTGTCCCA-TCACAGCAGGGCAGCGGG---AGAGACCG----------TTGTCGG- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255442 111 + 128539186 GCTGTAGAGTGACTTT--GGTGGGC-AGTGAA-TCCTCGTGCCTCT-GACCTGCTGTCTGAGACCCACGCTAAGCTTGTCCCA-TCACAGCAGGGCAGCGGG---AGAGACCG----------TTGTTGG- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597516 111 + 6255621 GCTGTAGAGTGACATT--GGTGGGC-AGTAAA-TCCTCGTGCCTCT-GACCTGCTGTCTGAGACCCACGCTAAGCTTGTCCCA-TCACAGCAGGGCAGCGGG---AGAGACCG----------TTGTCGG- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633105 111 - 8658521 GCTGTAGAGTGACTTT--GGTGGGC-AGTGAA-TCCTTGTGCCTCT-GACGTGCTGGCTGAGACCCACACTAAGCTTGTCCCA-TCACAGCAGGGCAGTGGG---AGAGGCCG----------TTGTCGG- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114835029 119 + 124281992 GCTGTAGAGTGACTTT--GGT-GGT-AGCGAA-TCCTCATGCCTCT-GACGTGCTGGCTGAGACCCACGCTAAGCTTGTCCCA-TCACAGCAGGGCAGGGGG---AGAGACCAG-TGACCAGCTTGCCAG- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479294 120 - 9212255 GCTGTAGAGTGACTTT--GGTGGGT-GGTGAA-TCCTCATGCCTCC-GACGTGCTGGCTGAGACCCACACTAAGCTTGGCCCA-TCACAGCAGGGCGGGGGG---AGAGACCAG-TGAGCAGCTCGTCAG- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898299 117 + 4466143 GCTGTAGAGTGACTTT--GGTGGGT-GATGAA-TCCTCATGCCTCT-GACATGCTGGCTGAGACCCACGCTGAGCTTGTCCCA-TCACAGCAGGGCAGGGGG---AGAGA-CAG-TGACCAGCTTGTC--- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601232 120 + 5364348 GCTGTAGAGTGACTTT--GGTGGGT-GGTGAA-TCCTCATGCCTCT-GACATGCTGGCTGAGACCCACGCTACGCTTGTCCCA-TCACAGCAGGGCAGAGGG---AGAGACCAG-TGACCAGCTTGTCAG- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4322661 111 + 7922563 gccTTAGAGTGATTTTAGAGTAGGA-CGTGAG-TCTCTGTGCCTCT-GACATGTAGGCTTAGACCCACCCTCAGCTTGTCCTG-CT------------TGGT---ATAGACACACTGACCAGCTTAGCAG- i otoGar3.GL873618 I 136 C 0 s mm10.chr5 124819730 71 + 151834684 GGGATTGGGGGACTTT--GAAATGC-AGAGAGCTGCAGGTGTCTCTGGGTATGC---------------CTAGTCTGGACTC--------CAGGGCA---------------------------------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33176012 103 - 38964690 GCTTTAGAGTGA---T--GGCAGG--AGCAAG-TCCTCGAGTTCCC-GAAGTGCTGGCTCAGTTGAACCCTCCACCTGGCCCAGGCACAGC-GTGCAGTGGGCACGGAGACAT------------------ i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 858167 123 - 1116856 GCTTCAGAGCAATTTT--GGTAGGAGAATGAA-TCCTAATGTTCCC-GAAATGCTGGTTTAGACCCA-GCTGAGCTTGCCCCAGACACTGCTGTGCAGGTGA---TGAGACACAGCGCTCAGAGCACTGGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9482282 594 - 31815103 I e proCoq1.NW_012154285v1 6736382 606 - 9870158 I a score=408387.000000 s hg38.chr12_KI270834v1_alt 91099 30 + 119498 GGGCCG-CAGGTGGTGAGGGCCTCTCACTGT- s panTro5.chr12 127376645 30 + 137163284 GGGCCG-CAGGTGGTGAGGGCCTCTCACTGT- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726952 30 + 135337776 GGGCCG-CAGGTGGTGAGGGCCTCTCACTGT- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240584 30 - 8369578 GGGCCG-CAGGTGGTGAGGGCCTCTCACTGT- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97898988 30 + 106955855 GGGCCG-CAGGTGGTGAGGGCCTCTCGCTGT- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013221 30 + 133663169 GGGCTG-CAGGTGGTAAGGGCCTCTCACTGT- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261311 30 + 137757926 GGGCTG-CAGATGGTAAGGGCCTCTCACTGT- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10659981 30 - 16319837 GGGCTG-CAGGTGGTAAGGGCCTCTCACTGT- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283624 30 + 20526591 GGGCTG-CAGGTGGTGAGGGCCTCTCACTGT- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255553 30 + 128539186 GGGCTG-CAGGTGGTGAGGGCCTCTCACTGT- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597627 30 + 6255621 GGGCTG-CAGGTGGTGAGGGCCTCTCACTGT- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633216 30 - 8658521 GGTCCA-CAGGTGGTGAGGGCCTCTCACTGT- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114835148 30 + 124281992 GGGCTG-CAGGTGGTGAGGGCCTCTCGTTGT- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479414 30 - 9212255 GGGCTG-CAGGTGCTGAGGGCCTCTCGCTGT- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898416 30 + 4466143 GGGCTG-CAGGTGGTGAGGGCCTCTCGCTGT- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601352 30 + 5364348 GGGCTG-CAGGTGCTGAGGGCCTCTCGCTGT- i aotNan1.NW_018491581v1 C 0 I 1 s proCoq1.NW_012154285v1 6736988 30 - 9870158 GGGCCA-CAGGCGGTGAGCGCCTCTCGCTGT- i proCoq1.NW_012154285v1 I 606 C 0 s otoGar3.GL873618 4322772 30 + 7922563 GGACCA-CAGGCGGTGAGTGTCTGTCATTGT- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124819801 20 + 151834684 --------AGCAAGTGAAGGT---TCTCTGT- i mm10.chr5 C 0 C 0 s canFam3.chr26 33176115 31 - 38964690 GGGCTGCCTGGCAGTGATGGCCTCCCTTTGC- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 858290 30 - 1116856 GGGACA-CAGG-GGTGAGGGCCTCTCCCCATT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9482282 594 - 31815103 I a score=4828554.000000 s hg38.chr12_KI270834v1_alt 91129 241 + 119498 CCCCCACAGTCACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTACGAGAGGCGGGAGCTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAACAAGAACCTGCTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACGGGGAACATGCTGGACAATGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGT s panTro5.chr12 127376675 241 + 137163284 CCCCCACAGTTACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTACGAGAGGCGGGAGCTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGTGAGAACAAGAACCTGCTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACGGGGAACATGCTGGACAATGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125726982 241 + 135337776 CCCCCACAGTTACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTACGAGAGGCGGGAGCTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGTGAGAACAAGAACCTGCTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACGGGGAACATGCTGGACAATGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240614 240 - 8369578 -CCCCACAGTCACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTACGAGAGGTGGGAGCTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAACAAGAACCTGCTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACATCCACGGGGAACATGCTGGACAATGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899018 241 + 106955855 CCCCCACAGTCACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTACGAGAGGCGGGAGCTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAACAAGAACCTGCTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACCGGGAACATGCTGGACAACGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013251 241 + 133663169 CCCCCACAGTCACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTACGAGAGGCGGGAGTTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAACAAGAACCTACTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACCGGGAACATGCTGGACAATGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261341 241 + 137757926 CCCCCACAGTCACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTACGAGAGGCGGGAGTTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAACAAGAACCTACTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACCGGGAACATGCTGGACAATGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660011 241 - 16319837 CCCCCACAGTCACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTACGAGAGGCGGGAGTTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAACAAGAACCTACTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACCGGGAACATGCTGGACAATGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283654 241 + 20526591 CCCCCACAGTCACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTACGAGAGGCGGGAGTTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAACAAGAACCTACTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACCGGGAACATGCTGGACAATGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255583 241 + 128539186 CCCCCACAGTCACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTATGAAAGGCGGGAGCTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAACAAGAACCTGCTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACCGGGAACATGCTGGACAATGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597657 241 + 6255621 CCCCCACAGTCACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTATGAGAGGCGGGAGTTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAACAAGAACCTACTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACCGGGAACATGCTGGACAATGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633246 241 - 8658521 CCCCCACAGTCACACTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTACGAGAGGCGGGAGCTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAACAAGAACCTGCTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACCGGGAACATGCTGGACAATGCGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114835178 240 + 124281992 -CCCCACAGTCACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTATGAGAGGCGGGAGCTGGAGGAGCAGCGGGAGCATCTCATCCAGGAGACCAGTGAGAACAAGAACCTGCTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACCGGGAACATGCTGGACAACGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479444 241 - 9212255 CCCCCACAGTCACTCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTACGAGAGGCGGGAGCTGGAGGAGCAGCGGGAGCACCTTATCCAGGAGACCAGCGAGAACAAGAACCTGCTCAAGGACCTGGAAGATTCCCTGCTTCGGGAGCTGGCCACGTCCACCGGGAACATGCTGGACAACGTGGACCTGGTGCATACCCTGGAGGAGACCAAATCCAAGGCCACAGAGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898446 241 + 4466143 CCCCCACAGTCACACTGAAGGGCCTAGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTATGAGAGGCGGGAGCTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAACAAGAATCTGCTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACCGGGAACATGCTGGACAACGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601383 241 + 5364348 CCCCCACAGTCACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTATGAGAGGCGGGAGCTGGAAGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAACAAGAACCTGCTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCATGTCCACCGGGAACATGCTGGACAGCGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGT i aotNan1.NW_018491581v1 I 1 C 0 s micMur3.chr21 9482876 241 - 31815103 CCCCCACAGTGACGCTCAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCCTACGAGAGGCGGGAGCTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGACAACAAGAACCTGCTCAAGGACCTGGAGGACTCGCTCCTGCGGGAGCTGGCGACCTCCACGGGGAACATGCTGGACAACGTGGAGCTGGTGCAGACCCTGGAGGAGACCAAGTCCAAGGCCACAGAGGT i micMur3.chr21 I 594 I 243 s proCoq1.NW_012154285v1 6737018 240 - 9870158 -CCCCACAGTCACGCTCAAGGGCCTGGAGGACCAGCTGCTGAGTGTGCTGGTGGCCTACGAGAGGCGAGAGCTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAATAAGAACCTGCTCAAGGACCTGGAGGACTCGCTCCTGCGGGAGCTGGCAACCTCCACGGGGAACATGCTGGACAACGTGGAGCTGGTGCAGACCCTGGAGGAGACCAAGTCCAAAGCCACGGAGGT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4322802 240 + 7922563 -TCCCACAGTCACACTGAAGGGCCTGGAGGACCAGCTTCTGAGCGTGCTGGTGGCCTTTGAGAGGCGGGAGCTGGAAGAGCAGAGGGAGCACCTCATCCAGGAGACCAGTGAGAATAAGAATCTGCTCAAGGACCTGGAGGATTCCCTCCTCCGGGAACTGGCAACCTCCACGGGGAACATGCTGGATAATGTGGAGCTGGTGCAGACCTTGGAGGAGACCAAGTCTAAAGCCACAGAGGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124819821 240 + 151834684 -CCTTTCAGTCACTCTGAAGGGCCTAGAGGACCAGCTGCTGAGTGTGCTGGTGGCCTATGAGAGGCGCGAGCTGGAGGAGCAGAGGGAGCACCTCATCCAAGAGACCAGCGAGAACAAGAACCTGCTCAAGGACCTGGAGGACTCACTCCTGCGCGAGCTGGCCACGTCCACGGGCAACATGCTGGACAATGTGGAGCTGGTGCAGACCCTGGAAGAGACCAAGTCCAAAGCCACAGAGGT i mm10.chr5 C 0 C 0 s canFam3.chr26 33176146 241 - 38964690 TCCCCATAGTCACACTGAAAGGTCTCGAGGATCAGCTGCTGAGCGTGCTGGTGGCCTATGAGAGGCGAGAGCTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACGAGTGAGAACAAGAACCTGCTGAAGGATTTGGAAGACTCTCTGCTTCGGGAACTGGCCACCTCCACGGGGAATATGCTGGACAATGTGGAGCTGGTACAGACCCTGGAGGAGACCAAATCCAAGGCCATGGAGGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 858320 241 - 1116856 CCCCTGCAGTCACTCTGAAGGGTCTCGAAGACCAGCTGCTCAGTGTACTGGTGGCCTTCGAGAGGCGAGAGCTGGAGGAGCAGCGAGAGCATCTTATCCAGGAGACGAGCGAGAACAAGAACCTGCTGAAGGATCTGGAAGATTCCCTCCTTCGGGAGCTGGCAACCTCCACGGGAAATATGCTGGATAATGTGGAGCTGGTGCAAACCCTGGAGGAGACCAAATCCAAAGCAACAGAGGT i dasNov3.JH568189 C 0 C 0 a score=154448.000000 s hg38.chr12_KI270834v1_alt 91370 16 + 119498 AGCAACCACAGTGGAA s panTro5.chr12 127376916 16 + 137163284 AGCAACCACAGTGGAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125727223 16 + 135337776 AGCAACCACAGTGGAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240854 16 - 8369578 AGCAACCACAGTGGAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899259 16 + 106955855 AGCAACCACAGTGGGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013492 16 + 133663169 AGCAGCCACAGCGGAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261582 16 + 137757926 AGCAGCCACAGCGGAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660252 16 - 16319837 AGCAGCCACAGCGGAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283895 16 + 20526591 AGCAGCCACAGCGGAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255824 16 + 128539186 AGCAGCCACGGCAGAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597898 16 + 6255621 AGCAGCCACAGCGGAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633487 15 - 8658521 GACAGCCACGGCGG-G i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114835418 16 + 124281992 AGCAACCATAGCAGAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479685 16 - 9212255 AGCAACCACAGCAGAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898687 16 + 4466143 AGCAACCACAGCAGAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601624 16 + 5364348 AGCAACCGCAGCAGAA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6737258 16 - 9870158 GGGAGCCGCAGTGGAA i proCoq1.NW_012154285v1 C 0 I 217 s otoGar3.GL873618 4323042 16 + 7922563 AGAAACTACAGTGGAA i otoGar3.GL873618 C 0 I 2 s mm10.chr5 124820061 16 + 151834684 GGGCACCTCTGTGCAG i mm10.chr5 C 0 C 0 s canFam3.chr26 33176387 13 - 38964690 ATAAACTGCATTG--- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 858561 14 - 1116856 ACAAGCAGAGGTGG-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9483117 243 - 31815103 I a score=186143.000000 s hg38.chr12_KI270834v1_alt 91386 22 + 119498 GAGGCCG---TGAGTCAGGCGG----GGC s panTro5.chr12 127376932 22 + 137163284 GAGGCCG---TGAGTCAGGCGG----GGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125727239 22 + 135337776 GAGGCCG---TGAGTCAGGCGG----GGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240870 22 - 8369578 GAGGCCG---TGAGTCAGGCGG----GGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899275 22 + 106955855 AAGGCCG---TGAGCCAGATGG----GGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013508 22 + 133663169 AAGGCCC---TGAGCCAGGCGG----GGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261598 22 + 137757926 AAGGCCC---TGAGCCAGGCGG----GGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660268 22 - 16319837 AAGGCCC---TGAGCCAGGCGG----GGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283911 22 + 20526591 AAGGCCC---TGAGCCAGGCGG----GGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255840 22 + 128539186 AAGGCCC---TGAGCCAGGCGG----GGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597914 22 + 6255621 AAGGCCC---TGAGCCAGGCGG----GGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633502 22 - 8658521 AAGGCCC---TGGGCCAGGCGG----GGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114835434 22 + 124281992 AAGGTCC---TGAGCCAGGCAG----GGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479701 22 - 9212255 AAGGCCC---TGGGCCAGGCGG----GGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898703 22 + 4466143 AAGGCCC---TGAGCCAGGCAG----GGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601640 22 + 5364348 AAGGCCC---TGAGCCAGGCAG----GGC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4323060 25 + 7922563 AAAATTCAAGTGGGGGTGGGAG----GGG i otoGar3.GL873618 I 2 C 0 s mm10.chr5 124820077 11 + 151834684 --------------GCAGGAGG----GGC i mm10.chr5 C 0 I 694 s canFam3.chr26 33176400 22 - 38964690 -------AGCTGAGAATGGTGGTAGTGGT i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 858575 16 - 1116856 --GGCTG---GAGGGCAGGGG-------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9483117 243 - 31815103 I e proCoq1.NW_012154285v1 6737274 217 - 9870158 I a score=445012.000000 s hg38.chr12_KI270834v1_alt 91408 44 + 119498 CTGCATGCGCCGT-------TGGAGCGTCCATTTCTCTGTCTGCT-----------------------CAATGA s panTro5.chr12 127376954 44 + 137163284 CTGCATGCGCCGT-------TGGAGCGTCCATTTCTCTGTCTGCT-----------------------CAATGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125727261 44 + 135337776 CTGCATGCGCCGT-------TGGAGCGTCCATTTCTCTGTCTGCT-----------------------CAATGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240892 44 - 8369578 CTGCATGCGCCGT-------TGGAGCGTCCATTTCTCTGTCTGCT-----------------------CAATGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899297 44 + 106955855 CTGTGTGTGCCGT-------TGGAGCGTCCATTTCTCTGTCTGCT-----------------------CAATGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013530 44 + 133663169 CTGCATGCACCTT-------TGGAGCATCCAGTTCTCTGTCTGCT-----------------------CAATGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261620 44 + 137757926 CTGCATGCACCTT-------TGGAGCATCCAGTTCTCTGTCTGCT-----------------------CAATGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660290 44 - 16319837 CTGCATGCACCTT-------TGGAGCATCCAGTTCTCTGTCTGCT-----------------------CAATGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283933 44 + 20526591 CCGCATGCACCTT-------TGGAGCATCCAGTTCTCTGTCTGCT-----------------------CAATGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255862 44 + 128539186 CTGCATGCACCTT-------TGGAGCATCCAGTTCTCTGTCTGCT-----------------------CAATAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597936 44 + 6255621 CCGCGTGCACCTT-------TGGAGCATCCAGTTCTCTGTCTGCT-----------------------CAATGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633524 44 - 8658521 CTGCAGGCACCTT-------GGCAGCGTCCAGTTCTCTGTCTGCT-----------------------CAATGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114835456 51 + 124281992 CTGCATGCGCCCTTGGAGCCTGGAGCGTCCATTTCCTTGTCTATT-----------------------CAATAA i calJac3.chr9 C 0 I 249 s saiBol1.JH378194 479723 44 - 9212255 CTGCATGTGCCCT-------GGGAGCGTCCATTGCCTTGTCTATT-----------------------CAATGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898725 44 + 4466143 CTGCATGCGCCCT-------TGGAGCGTCCATTTCCTTTTCTATT-----------------------CAATAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601662 44 + 5364348 CTGCATGCGCCCT-------TGGAACGTCCATTTCCGTGTCTATT-----------------------CAATAA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4323085 44 + 7922563 ATGGATGTGCCCT-------TGGAGTgcctgtttcctcatctgct-----------------------caatga i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33176424 44 - 38964690 CTGGATGTGCCTT-------TGgggcgccagtgccctcatctgct-----------------------caagga i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 858591 65 - 1116856 --GCAGCTGCCCC-------GGGATGGTTTTTCTCTTCACCTGCTGCTCTGGCTGGAGGCACCAGCTCTGATGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9483117 243 - 31815103 I e mm10.chr5 124820088 694 + 151834684 I e proCoq1.NW_012154285v1 6737274 217 - 9870158 I a score=228660.000000 s hg38.chr12_KI270834v1_alt 91452 19 + 119498 GAAAATGGGGCTCTGTGAT s panTro5.chr12 127376998 19 + 137163284 GAAAATGGGGCTCTGTGAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125727305 19 + 135337776 GAAAATGGGGCTCTGTGAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240936 19 - 8369578 GAAAATGGGGCTCTGTGAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899341 19 + 106955855 GAAAACGGGGCTCTGTGAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013574 19 + 133663169 GAAAACTGGGCTCTGTGAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261664 19 + 137757926 GAAAACTGGGCTCTGTGAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660334 19 - 16319837 GAAAACTGGGCTCTGTGAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283977 19 + 20526591 GAAAACTGGGCTCTGTGAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255906 19 + 128539186 GAAAACTGGGCTCTGTGAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597980 19 + 6255621 GAAAACTGGGCTCTGTGAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633568 19 - 8658521 GAAAACTGGGCTCTGTGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114835756 19 + 124281992 GAAAACTGGGCTCTGTGAT i calJac3.chr9 I 249 C 0 s saiBol1.JH378194 479767 19 - 9212255 GAAAGCGGGGCTCTGTGAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898769 17 + 4466143 GAAAAC--AGCTCTGTGAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601706 19 + 5364348 GAAAACTGGGCTCTGTGAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4323129 19 + 7922563 ggaaatcggacttggtgat i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33176468 19 - 38964690 gagaactggatttggtgat i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 858656 19 - 1116856 GAACATGGAGCTCGTTGAT i dasNov3.JH568189 C 0 I 2050 e micMur3.chr21 9483117 243 - 31815103 I e mm10.chr5 124820088 694 + 151834684 I e proCoq1.NW_012154285v1 6737274 217 - 9870158 I a score=34739.000000 s hg38.chr12_KI270834v1_alt 91471 8 + 119498 CTCAGGG-----------------------------------------------------------------------------------------------------------------C s panTro5.chr12 127377017 8 + 137163284 CTCAGGG-----------------------------------------------------------------------------------------------------------------C i panTro5.chr12 C 0 C 0 s panPan2.chr12 125727324 8 + 135337776 CTCAGGG-----------------------------------------------------------------------------------------------------------------C i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240955 8 - 8369578 CTCAGGG-----------------------------------------------------------------------------------------------------------------C i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899360 8 + 106955855 CTCAGGG-----------------------------------------------------------------------------------------------------------------A i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013593 8 + 133663169 CTCAGGG-----------------------------------------------------------------------------------------------------------------A i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261683 8 + 137757926 CTCAGGG-----------------------------------------------------------------------------------------------------------------A i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660353 8 - 16319837 CTCAGGG-----------------------------------------------------------------------------------------------------------------A i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12283996 8 + 20526591 CTCAGGG-----------------------------------------------------------------------------------------------------------------A i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255925 8 + 128539186 CTCAGGG-----------------------------------------------------------------------------------------------------------------A i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 597999 8 + 6255621 CTCAGGA-----------------------------------------------------------------------------------------------------------------A i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633587 8 - 8658521 CTCAGGG-----------------------------------------------------------------------------------------------------------------A i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114835775 8 + 124281992 CTCAGGG-----------------------------------------------------------------------------------------------------------------A i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479786 8 - 9212255 CTCAGGG-----------------------------------------------------------------------------------------------------------------A i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898786 8 + 4466143 CTCAGGG-----------------------------------------------------------------------------------------------------------------A i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601725 8 + 5364348 CTCAGGG-----------------------------------------------------------------------------------------------------------------A i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4323148 121 + 7922563 cACAGGGGCTTGTTCATGGTCATAGGCCTTAGTATACAATAGCTGAGCATTAAGGGCCATCTGCCTGTCCCTCATCAGACTCAGTCCTTGAATCACCTGAAAATTTGCATGATGATATTAA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33176487 8 - 38964690 ctcaggg-----------------------------------------------------------------------------------------------------------------c i canFam3.chr26 C 0 I 108 e micMur3.chr21 9483117 243 - 31815103 I e mm10.chr5 124820088 694 + 151834684 I e proCoq1.NW_012154285v1 6737274 217 - 9870158 I e dasNov3.JH568189 858675 2050 - 1116856 I a score=76170.000000 s hg38.chr12_KI270834v1_alt 91479 7 + 119498 TAAAAAC s panTro5.chr12 127377025 7 + 137163284 TAAAAAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125727332 7 + 135337776 TAAAAAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240963 7 - 8369578 TAAAAAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899368 7 + 106955855 TAAAAAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013601 7 + 133663169 TAAAAAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261691 7 + 137757926 TAAAAAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660361 7 - 16319837 TAAAAAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12284004 7 + 20526591 TAAAAAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255933 7 + 128539186 TAAAAAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 598007 7 + 6255621 TAAAAAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633595 7 - 8658521 TAAGAAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114835783 7 + 124281992 TAAAAAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479794 7 - 9212255 TAAAAAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898794 7 + 4466143 TAAAAAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601733 7 + 5364348 TAAAAAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4323269 7 + 7922563 TAAAAGG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33176603 7 - 38964690 TGAGAAC i canFam3.chr26 I 108 I 3 e micMur3.chr21 9483117 243 - 31815103 I e mm10.chr5 124820088 694 + 151834684 I e proCoq1.NW_012154285v1 6737274 217 - 9870158 I e dasNov3.JH568189 858675 2050 - 1116856 I a score=52209.000000 s hg38.chr12_KI270834v1_alt 91486 4 + 119498 CCA-C s panTro5.chr12 127377032 4 + 137163284 CCA-C i panTro5.chr12 C 0 C 0 s panPan2.chr12 125727339 4 + 135337776 CCA-C i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240970 4 - 8369578 CCA-C i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899375 4 + 106955855 CCA-C i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013608 4 + 133663169 CCA-C i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261698 4 + 137757926 CCA-C i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660368 4 - 16319837 CCA-C i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12284011 4 + 20526591 CCA-C i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255940 4 + 128539186 CCA-C i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 598014 4 + 6255621 CCA-C i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633602 4 - 8658521 CCA-C i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114835790 4 + 124281992 TTA-C i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479801 4 - 9212255 CCG-C i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898801 4 + 4466143 CCA-C i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601740 4 + 5364348 CCA-C i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4323276 5 + 7922563 CCACC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124820782 4 + 151834684 CCA-C i mm10.chr5 I 694 C 0 s canFam3.chr26 33176613 4 - 38964690 CCA-C i canFam3.chr26 I 3 C 0 e micMur3.chr21 9483117 243 - 31815103 I e proCoq1.NW_012154285v1 6737274 217 - 9870158 I e dasNov3.JH568189 858675 2050 - 1116856 I a score=154535.000000 s hg38.chr12_KI270834v1_alt 91490 11 + 119498 CTCTATTGGGA s panTro5.chr12 127377036 11 + 137163284 CTCTATTGGGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125727343 11 + 135337776 CTCTATTGGGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240974 11 - 8369578 CTCTATTGGGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899379 11 + 106955855 CTCTATTGGGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013612 11 + 133663169 CTCTATTGGGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261702 11 + 137757926 CTCTATTGGGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660372 11 - 16319837 CTCTATTGGGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12284015 11 + 20526591 CTCTATTGGGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255944 11 + 128539186 CTCTATTGGGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 598018 11 + 6255621 CTCTATTGGGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633606 11 - 8658521 CTCTATTGGGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114835794 11 + 124281992 CTCTGTTGGGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479805 11 - 9212255 CTCTGTTGGGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898805 11 + 4466143 CTCTGTTGGGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601744 11 + 5364348 CTCTGTTGGGA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4323281 11 + 7922563 CTCTATTGAGG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124820786 11 + 151834684 CAATATGGGAC i mm10.chr5 C 0 C 0 s canFam3.chr26 33176617 11 - 38964690 CTCTATTGGGG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 860725 11 - 1116856 CTTTCCTGGGC i dasNov3.JH568189 I 2050 C 0 e micMur3.chr21 9483117 243 - 31815103 I e proCoq1.NW_012154285v1 6737274 217 - 9870158 I a score=40110.000000 s hg38.chr12_KI270834v1_alt 91501 2 + 119498 TG s panTro5.chr12 127377047 2 + 137163284 TG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125727354 2 + 135337776 TG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240985 2 - 8369578 TG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899390 2 + 106955855 TG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013623 2 + 133663169 TG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261713 2 + 137757926 TG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660383 2 - 16319837 TG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12284026 2 + 20526591 TG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255955 2 + 128539186 TG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 598029 2 + 6255621 TG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633617 2 - 8658521 TG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114835805 2 + 124281992 TG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479816 2 - 9212255 TG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2898816 2 + 4466143 TG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601755 2 + 5364348 TG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9483360 2 - 31815103 TG i micMur3.chr21 I 243 C 0 s otoGar3.GL873618 4323292 2 + 7922563 TG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124820797 2 + 151834684 TG i mm10.chr5 C 0 C 0 s canFam3.chr26 33176628 2 - 38964690 TG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 860736 2 - 1116856 TG i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6737274 217 - 9870158 I a score=1129423.000000 s hg38.chr12_KI270834v1_alt 91503 78 + 119498 TGCTGTGGGGAGGGGAGCCC-TAAAGGTGTTCCCAGGGACCCTTGGGCATCAGgtcagtctctttaaatcgagagtgat s panTro5.chr12 127377049 78 + 137163284 TGCTGTGGGGAGGGGAGCCC-TAAAGGTGTTCCCAGGGACCCTTGGGCATCAGgtcagtctctttaaatcgagagtgat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125727356 78 + 135337776 TGCTGTGGGGAGGGGAGCCC-TAAAGGTGTTCCCAGGGACCCTTGGGCATCAGgtcagtctctttaaatcgagagtgat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8240987 78 - 8369578 TGCTGTGGGGAGGGGAGCCC-TAAAGGTGTTCCCAGGGACCCTTGGGCATCAGgtcagtctctttaaatcgagagtgat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899392 78 + 106955855 TGCTGTGGGGAGGGGAGCGC-TAAAGGTGTTCCCAGGGATTCCTGGGCATCAGGTCAGTctcttcaaatcgagagtgat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013625 78 + 133663169 TGCTGTGGGGAGGGGAGCCC-TAAAGGTGTTCCCAGGGACCCTTAGGCATCAGgtcagtctctttaaattgagagtgat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261715 78 + 137757926 TGCTGTGGGGAGGGGAGCCC-TAAAGGTGTTCCCAGGGACCCTTAGGCATCAGgtcagtctctttaaattgagagtgat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660385 78 - 16319837 TGCTGTGGGGAGGGGAGCCC-TAAAGGTGTTCCCAGGGACCCTTAGGCATCAGGTCAGTctctttaaattgagagtgat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12284028 78 + 20526591 TGCTGTGGGGAGGGGAGCCC-TAAAGGTGTTCCCAGGGACCCTTAGGCATCAGGTCAGTctctttaaattgagagtgat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119255957 78 + 128539186 TGCTGTGGGGAGGGGAGCCC-TAAAGGTGTTCCCAGGGACCCTTAGGCATTAagtcagtctctttaaattgagagtgat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 598031 78 + 6255621 TGCTGTGGGGAGGGGAGCCC-TAAAGGTGTTCCCAGGGACCCTTAGGCATCAGgtcagtctctttaaattgagagtgat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633619 78 - 8658521 TGTTGTGGGGAGGGGAGCCC-TAAAGGTGTTCCCAGGGACCCTTGGGCATCAGgtcagtctcttcaaattgagagttat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114835807 70 + 124281992 TGCTGT-GGTAGGAGAGCCC-TAAAGGTGTTCCCAGGGTACCTGGGGCATCAGTTCAGTCTC-------TGAGagtgat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 479818 71 - 9212255 TGCTGTGGGGAGGAGAGTCC-TAAAGGTGTTCCCAGTGTCCCTGGCACCTCAGGTCAGTCTC-------TGAGAGTGAT i saiBol1.JH378194 C 0 I 137 s cebCap1.NW_016107484v1 2898818 70 + 4466143 TGCTGTGGGGAGGAGAGCCC-TAAAGGTGTTCCCAGCGTCCCTGGGGCAT--GGTCAGTCTC------ttgagagtgat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601757 71 + 5364348 TGTTGTGGGGAAAAGAGCCC-TAAAGGTGTTCCCAGGGTCCCTGGGGCATCAGGTCAGTCTC-------TGAGagtgat i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9483362 78 - 31815103 TGCTGTGGGGAGGGGAGTCC-TAAAGGTGTTCCCAGGGACCTCTGCGCCCCACgtcagcctctttcaactgagaatgat i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6737491 78 - 9870158 TGCCGTGAGGAGGGGAGTCC-TAAAGGTGTTCCCAGGGACCTCTGTGCACCAGGTCAGCctctttcaactgagaacgat i proCoq1.NW_012154285v1 I 217 C 0 s otoGar3.GL873618 4323294 79 + 7922563 TGCTATGAGGAGAGGTGTCCTTAAACGTGCCCCCAGGGATCCCTGTGCATCAagtcagcttctttcaactgagaatgat i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124820799 61 + 151834684 TGCTG-----------GTAT-AAAAGGGA-----AGGCACTCCTGTGCAGCTGG-CAACCTTCTTGAACCGAGAATCAA i mm10.chr5 C 0 I 5 s canFam3.chr26 33176630 78 - 38964690 TTCTATGAGGAGGGAGGCCC-TAGAGGTGTTCCCAGGGACCCTTGtgcatcagatcagcctctttgagtcaagagtgat i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 860738 78 - 1116856 GGCTGTGGGGAGGGGAGTCC-AAAATGCTTTCTCAGGCACGCTTGTACATCACATGAGCctctttcagttgagagagac i dasNov3.JH568189 C 0 C 0 a score=2752926.000000 s hg38.chr12_KI270834v1_alt 91581 180 + 119498 agaaaatccagccctgcctggcttaagtcaaaagggaagttatcagctgagaaagcagaaaagttcagagatggcctcaggtggggctggatccaggacttcaaaaa-taccaggagga-cctggtttctgtccatttctgggctgggccttctactgggttggcgtcattctctgcc--------------agct s panTro5.chr12 127377127 180 + 137163284 agaaaatccagccctgcctggcttaagtcaaaagggaagttatcagctgagaaagcagaaaagtccagagatggcctcaggtggggctggatccaggacttcaaaaa-taccaggagga-cctggtttctgtccatttctgggctgggccttctactgggttggtgtcattctctgcc--------------agct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125727434 180 + 135337776 agaaaatccagccctgcctggcttaagtcaaaagggaagttatcagctgagaaagcagaaaagtccagagatggcctcaggtggggctggatccaggacttcaaaaa-taccaggagga-cctggtttctgtccatttctgggctgggccttctactgggttggtgtcattctctgcc--------------agct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8241065 179 - 8369578 agaaaatccagccctgcctggcttaagtcaaaagggaagttatcagctgagaaagcagaaaagtccagagatggcctcaggtggggctggatccaggacttc-aaaa-taccaggagga-cctggtttctgtccatttctgggctgggccttctactgggttggcatcattctctgcc--------------agct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899470 180 + 106955855 agaaaatccagccttgcctggcttaagtcaaaagggaagttatcagctgagaaagcagaaaagtccagagatggcctcaagtggggctggatccacgacttcaaaaa-taccaggagga-cttggtttctgtccatttctgggctgggccttctactgggttggcgtcattctctgcc--------------agct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013703 180 + 133663169 ggaaaacccagccctgcctggcttaagtcaaaagggaagttatcagctgagaaagcagaaaagtgcagagatggcctcaggtggggctggatccaggacttcaaaaa-taccaggagga-cttggtttctctccatttctgggctgagccttctaccggcttggcgtcattctctgcc--------------agct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261793 180 + 137757926 ggaaaacccagccctgcctggcttaagtcaaaagggaagttatcagctgagaaagcagaaaagtgcagagatggcctcaggtggggctggatccaggacttcaaaaa-taccaggagga-cttggtttctctccatttctgggctgagccttctaccggcttggcgtcattctctgcc--------------agct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660463 180 - 16319837 ggaaaacccagccctgcctggcttaagtcaaaagggaagttatcagctgagaaagcagaaaagtgcagagatggcctcaggtggggctggatccaggacttcaaaaa-taccaggagga-cttggtttctctccatttctgggctgagccttctaccggcttggcgtcattctctgcc--------------agct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12284106 180 + 20526591 ggaaaacccagccctgcctggcttaagtcaaaagggaagttatcagctgagaaggcagaaaagtgcagagatggcctcaggtggggctggatccaggacttcaaaaa-taccaggagga-cttggtttctctccatttctgggctgggccttctaccggcttggcgtcattctctgcc--------------agct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119256035 180 + 128539186 ggaaaacccagccctgcctggcttaagtcaaaagggaagttatcagctgagaaagcagaaaagtccagagatggcctcaggtggcgccggatccaggacttcaaaaa-taccaggaaga-cttggtttctgtccatttctgggctgggccttctaccggcttggcgtcattctctgcc--------------agct i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 598109 180 + 6255621 ggaaaacccagccctgcctggcttaagtcaaaagggaagttatcagctgagaaagcagaaaagtgcagagatggcctcaggtggggctggatccaggacttcaaaaa-taccaggagga-cttggtttctctccatttctgggctgggccttctaccggcttggcgtcattctctgcc--------------agct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633697 180 - 8658521 ggaaaacccagccctgcctggcttaagtcaaaagggaagttatcagctgagaaagcagaaaagtccagagatggcctcaggcggggctggatccaggacttcaaaaa-taccaggagga-cttggtttctctccatttctgggctgggccttctaccgggttggcgtcattctctgcc--------------agct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114835877 180 + 124281992 agaaaacctagccctgcctggcttaagtcaacagggaagttatctgctgagaaagctgaaaagtccagagatagcttcaggtggggctggatccaggacttcagaaa-tcccaggagga-cttggtttctctccatttttgggctgggctttctactgggttggcttgattctctgcc--------------acct i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 480026 179 - 9212255 agaaaaCTCAGCCCTGCCT-gcttaagtcaacagggacgttatctgctgagaaagctgaaaagtccagagatagcttcaggtggggctggatccaggacttcaaaaa-ccccaggagga-cttggtttctctccatttctgggccgggctttctactgggttggcttgattctctgcc--------------agct i saiBol1.JH378194 I 137 C 0 s cebCap1.NW_016107484v1 2898888 180 + 4466143 agaaaacccagccctgcctggcttaagtcaacagggaagttatctgctgagaaagctgaaaagtccagagatagcttcaggtagggttggatctaggacttcaaaaa-tcccaggagga-cttgattcctctccatttctgggctgggctttctactgggttggcttgattctctgcc--------------agct i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1601828 180 + 5364348 agaaaacccagccctgcctggcttaagtcgacagggaagttatctgctgagaaagctgaaaagtccagagatagcttcaggtggggctggatccaggacgtcaaaaa-tcccaggagga-cttggtttctcttcatttctgggctgggctttctactgggttggcttgattctctgcc--------------agct i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9483440 176 - 31815103 agaaaacgcagccttacctggcttatgt--aaaaggaagtcatcagcttagaaagcagaaaagttcagggctggcttcaggcacagctggatccaagacttgaaaaagtaccatccggt-cttggtgtctctccatgtctgggcaggg---tctgctgggttggcttcattctctgcc--------------agCT i micMur3.chr21 C 0 I 429 s proCoq1.NW_012154285v1 6737569 176 - 9870158 agaaaacacagcccgacccggcatatgt--aaagggaaggtatcagcttagaaagcagaaaagttcagggatggcttcaggcagggctggatccaggacttgaaaaagtaccatctggt-cttgatttctctccatgtcttggcgggg---tctgctgggttggcttcattctctgcc--------------agct i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4323373 181 + 7922563 aagaaacacagtcttacctggcttacatcagaggggaagttattagtttagaaagtagaaaggttcagagatagcttcaggcagggctggatctgggacttggaaaaatatcactgagt-cttggtttctttctgtgtctgggctgggccttctgctgggctgtcttcattcttttct--------------catt i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124820865 174 + 151834684 Aaaaagcccagccatgcttgctttaaataaaaaggggagtta---gttcaaaaggtggagacatcctgatgtggcttcaggtaaggctggatccaggac-ccaaaaa-tattatatagatttttgtagctttccatctctgcgctgggcc-tatgttgggttgactccatcttcTTCC--------------AG-- i mm10.chr5 I 5 C 0 s canFam3.chr26 33176708 187 - 38964690 cgaaaacccagctctac-----ttaagtgaacagggaatttatctgcctagaatgtggaaa-gtccagggatggcttcaggtagagctggatctaggactctaaaca-tatcattaggg-ctcagtttctctctgtttctggggtgggccttttgttgaggcagcttcattctctgcctccctgt-gagccaagct i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 860816 179 - 1116856 agaaaacccagccctacctggtttaagtcaaaagggatttcatcagcttagaaaatacagaagtccatggat------------gactggacccatgactccaaaaa-tatca---gga-atccatttctctccctttctgggctgggccttcagtgggcttggcttcatttgcagcctccccacggagccaagct i dasNov3.JH568189 C 0 C 0 a score=656145.000000 s hg38.chr12_KI270834v1_alt 91761 50 + 119498 ccccacatggtcataagact-ggtc-TGGCCTCACGTCCTCTCGGGTCCAAA s panTro5.chr12 127377307 50 + 137163284 ccccacatggtcataagact-ggtc-GGGCCTCACGTCCTCTCAGGTCCAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125727614 50 + 135337776 ccccacatggtcataagact-ggtc-TGGCCTCACGTCCTCTCGGGTCCAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8241244 50 - 8369578 ccccacatggtcataagact-ggtc-TGGCCTCACGTCCTCTCGGGTCCAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899650 50 + 106955855 ccccacacagtcataagaat-ggtc-TGGCCTCACGTCCTCTCAGGTCCAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013883 49 + 133663169 ccctacatggtcataagact-ggtc-TGGCCTCATGT-CTCTCAGCTCTAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128261973 49 + 137757926 ccctacatggtcataagact-ggtc-tggcctcatgt-ctctcagctctaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660643 49 - 16319837 ccctacatggtcataagact-ggtc-TGGCCTCATGT-CTCTCAGCTCTAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12284286 49 + 20526591 ccctacatggtcataagact-ggtc-TGGCCTCATGT-CTCTCAGCTCTAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119256215 50 + 128539186 ccctacatggtcataagact-ggtc-tggcctcatgtcctctcaggtctaaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 598289 49 + 6255621 ccctacatggtcataagact-ggtc-TGGCCTCATGT-CTCTCAGCTCTAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633877 50 - 8658521 ccctacatggtcagaagact-ggtc-TGGCCTCATGTCCTCTCAGGTCTAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114836057 50 + 124281992 ccccacatggtcataagaCT-AGTC-TGGCCTCACGTCCTCTCAGGTCCAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 480205 50 - 9212255 ccccacatggtcataagGCT-GGTC-TGGCCTCACGACCTCGCAGGTCCAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2899068 50 + 4466143 ccccacatggtcataagact-ggtc-TGGCCTCACGTCCTCTCAGGTCCAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1602008 50 + 5364348 ccccacatggtcataagact-ggtc-TGGCCTCACGTCCTCTCAGGTCTAAA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6737745 51 - 9870158 cttcgcacggtcacaagaccaggtc-tggcctcacgtcctctcagGGGGAAG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4323554 51 + 7922563 cctcccagggtcataagaccatgtg-tggcctcatgtcctctcaggttcaag i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124821039 44 + 151834684 -------TGTTTGCATGAAA-GGACATGGCCTGATGTCCCCTCAAATTCAAG i mm10.chr5 C 0 I 41 s canFam3.chr26 33176895 50 - 38964690 cccctcatggtcagcaggtg-ggca-tggcctcatgccccctcaggttcagg i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 860995 48 - 1116856 --cctcattgtcacaagatg-gctc-tggcctcttgtcccttcaggttcaag i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9483616 429 - 31815103 I a score=925163.000000 s hg38.chr12_KI270834v1_alt 91811 65 + 119498 CCCAAAGGGGTAAGTGAGAATC--TT--CCTGTTCCTACCGTGAAGGTCCTGAGAGTCActtaggtcac s panTro5.chr12 127377357 65 + 137163284 CCCAAAGGGGTAAGTGAGAATC--TT--CCTGTTCCTACTGTGACGGTCCTGAGAGTCActtaggtcac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125727664 65 + 135337776 CCCAAAGGGGTAAGTGAGAATC--TT--CCTGTTCCTACTGTGACGGTCCTGAGAGTCActtaggtcac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8241294 65 - 8369578 CCCAAAGGGGTAAGTGAGAATC--TT--CCTGTTCCTACCGTGAAGGTCCTGAGAGTCActtaggtcac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899700 65 + 106955855 CCCAAAGGGATAAGTGAGAATC--TT--CCTGTTCCTACCGTGAAGGTCCTGAGAGTCActtaagtcac i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013932 65 + 133663169 CCCAAAGGGATAAGTGAGAATC--TT--CCTGTTCCTACCATGAAGGTCCTGGAAGTCActtaagtcac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128262022 65 + 137757926 cccaaagggataagtgagaatc--tt--cctgttcctaccatgaaggtcctggaagtcacttaagtcac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660692 65 - 16319837 CCCAAAGGGATAAGTGAGAATC--TT--CCTGTTCCTACCATGAAGGTCCTGGAAGTCActtaagtcac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12284335 65 + 20526591 CCCAAAGGGATAAGTGAGAATC--TT--CCTGTTCCTACCATGAAGGTCCTGGAAGTCActtaagtcac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119256265 65 + 128539186 cccaaagagataagtgagaatc--tt--cctgttcctaccatgaaggtcctggaagtcacttaagtcac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 598338 65 + 6255621 CCCAAAGGGATAAGTGAGAATC--TT--CCTGTTCCTACCATGAAGGTCCTGGAAGTCActtaagtcac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633927 65 - 8658521 CCCAAAGGGATAAGTGAGAATC--TT--CCTGTTCCTACCATGAAGGTCCTGGAAGTCActtaagtcac i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114836107 64 + 124281992 CCCAAAGGGATAAGTGAGAATC--TT--CCTATT-CTACTGTGAAGGTCCTGAGAGTCACTGAAGTCAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 480255 65 - 9212255 CCCAAAGGGATAAGTGAGAATC--TT--CCTGTTCCTACCGTGAAGGTTCTGAGAGTCActggagtcac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2899118 63 + 4466143 CCCAAAGGGATAAGTGAGAATC--TT--CCTGTTCCTACTGTGAAGGTCCCAAGAGTCGCTGAAGT--C i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1602058 65 + 5364348 CCCAAAGGGATAAGTGAGAATC--TT--CCTGTTCCTACCGTGAAGGTCCTGAGAGTCACTGAAgtcac i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6737796 67 - 9870158 TCCAAAGGGATAAGTGAGAATCTTTT--CCTGATCCTATCATAAAGGTCCTGAGAGTCActtaagtcac i proCoq1.NW_012154285v1 C 0 I 341 s otoGar3.GL873618 4323605 67 + 7922563 tccaaagggataagtgagaatatttt--cctctttctgtcacgaaggtcctaagagtcacttacatcac i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33176945 67 - 38964690 tccaaagggaagagtgagaatc--tttacctgtctctatcatgaaggtcctgagagtcagttcagtcac i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 861043 67 - 1116856 tccaaggggaatggtgaggatctttt--cctgttgcaatcatgaaggtcctggaagtctctcaaatcat i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9483616 429 - 31815103 I e mm10.chr5 124821083 41 + 151834684 I a score=2283644.000000 s hg38.chr12_KI270834v1_alt 91876 211 + 119498 gtttctaccccaaagcagccctgggagcttggggatgctaggctcaggttagctggccctgggtca-----ca----------------tctcctggagtcg-gggtggaaccc-c--a--TATGGGAAGAAAAGGGAGAGGGCAGTACC-GGAGACTTA----------CAAGCAGTGTTACTAGGGGAAGGGGCCATGGGTGCAGGGGCGT-C-AGCCA-CAAATATTCACCCCTTCCTACAAGAGGGTG s panTro5.chr12 127377422 211 + 137163284 gtttctaccccaaagcagccctgggagcttggggatgctaggctcaggttagctgggccagggtca-----ca----------------tctcctggagtcg-gggtggaaccc-c--a--TATGGGAAGAAAAGGGAGAGGGCAGTACC-GGAGACTTA----------CAAGCAGTGTTACTAGGGGAAGGGGCCATGGGTGCAGGGGCGT-C-AGCCA-CAAATATTCACCCCTTCCTATAAGAGGGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125727729 211 + 135337776 gtttctaccccaaagcagccctgggagcttggggatgctaggctcaggttagctgggcctgggtca-----ca----------------tctcctggagtcg-gggtggaaccc-c--a--TATGAGAAGAAAAGGGAGAGGGCAGTACC-GGAGACTTA----------CAAGCAGTGTTACTAGGGGAAGGGGCCATGGGTGCAGGGGCGT-C-AGCCA-CAAATATTCACCCCTTCCTACAAGAGGGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8241359 210 - 8369578 gtttctaccccaaagcagccctgggagcttggggatgctaggctcaggttagctgggcct-ggtca-----ca----------------tctcctggagtcg-gggtggaaccc-c--a--TATGGGAAGAAAAGGGAGAGGGCAGTACC-GGAGACTTA----------CAAGCAGTGTTACTAGGGGAAGGGGCCATGGGTGCAGGGGCGT-C-AGCCA-CAAATATTCACCCCTTCCTACAAGAGGGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899765 211 + 106955855 attcctaccccaaagcagtcccgggagcttggggatggtaggctcaggttagctgggcctgggtca-----ca----------------tctcctggagtcg-gggtggAACCC-C--G--TATGGGAAGAAAAGGGAGAGGGCAGTACC-GGAGACTTA----------CAAGCAGTGTTACTAGAGGAAGGGGCCATCGGTGCAGGGGCGT-C-AGCCA-CAAATATTCACCCCTTCCTACAAGAGGGTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124013997 212 + 133663169 atttctaccctaaaccagtcccaggagcttggggatgctaggctcgggttggctgggcctgggtca-----ca----------------tctcctggagtct-gggtggaaccc-c--a--TATGGGATGAAAAGGGAGAGGGCAGTACCTGGAGACTTA----------CAAGCAGTGTTACTAGAGGAAGGGGCCTTGGGTGCAGGGGCAT-C-AGCCA-CAAATATTCACCCCTTCCTACAAGAGGGTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128262087 212 + 137757926 atttctaccctaaaccagtcccaggagcttggggatgctaggctcgggttggctgggcctgggtca-----ca----------------tctcctggagtct-gggtggaaccc-c--a--tatgggatgaaaagggagagggcagtacctggagactta----------caagcagtgttactagaggaaggggccttgggtgcaggggcat-c-agcca-caaatattcacCCCTTCCTACAAGAGGGTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660757 212 - 16319837 atttctaccctaaaccagtcccaggagcttggggatgctaggctcgggttggctgggcctgggtca-----ca----------------tctcctggagtct-gggtggaaccc-c--a--TATGGGATGAAAAGGGAGAGGGCAGTACCTGGAGACTTA----------CAAGCAGTGTTACTAGAGGAAGGGGCCTTGGGTGCAGGGGCAT-C-AGCCA-CAAATATTCACCCCTTCCTACAAGAGGGTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12284400 212 + 20526591 atttctaccccaaaccagtcccaggagcttggggatgctaggctcgggttggctgggcctgggtca-----ca----------------tctcctggagtct-gggtggaaccc-c--a--TATGGGATGAAAAGGGAGAGGGCAGTACCTGGAGACTTA----------CAAGCAGTGTTACTAGAGGAAGGGGCCTTGGGTGCAGGGGCAT-C-AGCCA-CAAATATTCACCCCTTCGTACAAGAGGGTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119256330 212 + 128539186 atttctaccccaaaccagtcccaggagcttagggatgctaggctcgggttggctgggcctgggtca-----ca----------------tctcctggagtgt-gggtggaaccc-c--a--tatgggatgaaaagggagagggcagtacctggagactta----------caagcagtgttactagaggaaagggccttgggtgcaggggcgt-c-agcca-caaatattcacCCCTTCCTACAAGAGGGTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 598403 212 + 6255621 atttctaccccaaaccagtcccaggagcttggggatgctaggcttgggttggctgggcctgggtca-----ca----------------tctcctggagtct-gggtggaaccc-c--a--TATGGGATGAAAAGGGAGAGGGCAGTACCTGGAGACTTA----------CAAGCAGTGTTACTAGAGAAAGGGGCCTTGGGTGCAGGGGCAT-C-AGCCA-CAAATATTCACCCCTTCCTACAAGAGGGTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4633992 212 - 8658521 atttctaccccaaaccagtcccaggagcttgaggatgctaggctcgggttggctgggcctgggtca-----ca----------------tctcctggagtct-gggtggaaccc-c--a--TATGGGATGAAAAGGGAGAGGGCAGTACCTGGAGACTTA----------CAAGCAGTGTTACTAGAGGAAGGGGCCTTGGGTGCAGGGGTGT-C-AGCCA-CAAATATTCACCCTTTCCTACAAGAGGGTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114836171 213 + 124281992 ATTTCTACTCCAGACCAGTCCTGGGAGCTTGGGGATGCTAGGCTCAAGTTGGCTGGGCCTGGGTCA-----CATGG----------TCTTCTCCC--------GGATGGAACCC-CATA--TATGGGATGAAAAGGGAGAGGGCAATACTTGGAGACTTA----------CAAGCAGCATTACTAGAGGAAGGGGCCATAGGTGCAGGGGCGT-C-AGCCA-CAAATATCCACCCCATCCTACAAGAGGGTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 480320 221 - 9212255 atttctactccataccagtcctgggagcttggggatgctaggctcaagttggctgggccagggtca-----catgg----------tcttctcccggtgtcagggatggaaccc-cata--tatgggatgaaaagggagaaggCAGTACTTGGAGACTTA----------CAAGCAGCGTTACTAGAGGAAGGGGCCATAGGTGCAGGGGTGT-C-AGCCA-CAAATACCCACCCCATCCTACAAGAGGGTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2899181 221 + 4466143 GTTTCTActccaaaccagtcctgggagcttggggatgctaggctcaagttggctgggcctgggtca-----catgg----------tcttctcctggtgtcagggatggaaccc-cata--tatgggatgaaaagggagagggCAGTACTTGGAGACTTA----------CAAGCAGCATTACTAGAGGAAGGGGCCATAGGTGCAGGGGCGT-C-AGCCA-CAGATAGCCACCTCATCCTACAAGAGGGTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1602123 221 + 5364348 atttctactccaaaccagtcctgggagcttggggatgctaggcttaagttggctgggcctgggtca-----catgg----------tcttctccccgtgtcagggatggaaccc-cata--tatgggatgaaaagggagagggCAGTACTTGGAGACTTA----------CAAGCACCGTTACTAGAGGAAGGGGCCATGGGTGCCGGGGCGT-C-AGCCA-CAAATATCCACCCCGTCCTACAAGAGTGTG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4323672 212 + 7922563 ctgcctaccccaaaccagtcccaaca-cctagggatgtcaggctttgattggctgggcctggggcaGCCTCCAGAGAAGTTGGGGTTCCTCCTCTGGATTTG-GGGTGGAGCCCAC--A--GATGGAATGAAAAGGGAAGGCACAG-ACTTGGAAAT----------------------------GAAGAAGTGGGCATGGGTG-AGTGGAGT-C-AGCTG--AAATACGGACCGCATCTGTCAAGAGGGTG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33177012 217 - 38964690 atacccaccccaaacgaataccatgg--ctgggagtgctgtgt----gtagactgggcctgggtca-----ca----------cgctcctcccctggagttg-gggtggacccaac--a--tatggactgagagggggaaa--------ttggagtctccaagttagagtcagggactgttgttagaagaacagggcacaggtaccggggagtcc-agccaacaaacatccactacaCGTCACAAGAGGGTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 861110 212 - 1116856 atgcctgcaccagaccaggcc-agtggcctagggatactatgcttgggtggg-tcggcctgggtca-----ca----------------tgctcTATTCATG-CGATAGAGCCC-T--AGTCGTGGAATGAAAGGGGGGAAGATGGGTCTCCGAGTAAAA--------ATCAGGGACTGTTCCTAGCAGACGGTG---TGGTTGCTGGAGAGT-CAAGCCA-CGTATTTCCACCACTTCTTGCAAAAGGGTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9483616 429 - 31815103 I e mm10.chr5 124821083 41 + 151834684 I e proCoq1.NW_012154285v1 6737863 341 - 9870158 I a score=1423480.000000 s hg38.chr12_KI270834v1_alt 92087 134 + 119498 GGTGCCCTCGCTCCCCTGCAGTCCCTGGATACTTTCAAAGCCCTGAAGCATTGTACA-TACCTCTCTGCTGTCCCCC--TGCCCCTCCTGCC-----CTC--------------TGCC--------------CACATC----------------------TCAGTCTTCCTG-----TTTC--------------------CAGGGTCACCTGTGCT------------ s panTro5.chr12 127377633 134 + 137163284 GGTGCCCTCGCTCCCCTGCAGTCCCTGGATACTTTCAAAGCCCTGAAGCATTGTACA-TACCTCTCTGCTGTCCCCC--TGCCCCTCCTGCC-----CTC--------------TGCC--------------CACATC----------------------TCAGTCTTCCTG-----TTTC--------------------CAGGGTCACCTGTGCT------------ i panTro5.chr12 C 0 C 0 s panPan2.chr12 125727940 134 + 135337776 GGTGCCCTCGCTCCCCTGCAGTCCCTGGATACTTTCAAAGCCCTGAAGCATTGTACA-TACCTCTCTGCTGTCCCCC--TGCCCCTCCTGCC-----CTC--------------TGCC--------------CACATC----------------------TCAGTCTTCCTG-----TTTC--------------------CAGGGTCACCTGTGCT------------ i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8241569 134 - 8369578 GGTGCCCTCGCTCCCCTGCAGTCCCTGGATACTTTCAAAGCCCTGAAGCATTGTACA-TACCTCTCTGCTGTCCCCC--TGCCCCTCCTGTC-----CTC--------------TGCC--------------CACATC----------------------TCAGTCTTCCTG-----TTTC--------------------CAGGGTCACCTGTGCT------------ i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97899976 134 + 106955855 TGTGCCCTCGGTCCCCTGCAGTCCCTGGATGCTTTCAAAGCCCTGAAGCATTGTACA-TACCTCTCTGCTGTCCCCC--TGTCCCTCCTGCC-----CTC--------------TGCC--------------CACATC----------------------TCAGTCTTCCTG-----TTTC--------------------CAGGGTCACTTGTGCT------------ i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124014209 134 + 133663169 GGTGCCCTCGGTCCCCTGCAGTCCCTGGATGCTTTCAAAGCCCTGGAGCATTGCATG-TACCTCTCTGCTGTCCCCC--TGCCCCTCCTGCC-----CTC--------------TGCC--------------CACTTC----------------------TCAGTCTCCCTG-----TTTC--------------------CAGGGTCACTTGTGCT------------ i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128262299 134 + 137757926 GGTGCCCTCGGTCCCCTGCAGTCCCTGGATGCTTTCAAAGCCCTGGAGCATTGCGTG-TACCTCTCTGCTGTCCCCC--TGCCCCTCCTGCC-----CTC--------------TGCC--------------CACTTC----------------------TCAGTCTCCCTG-----TTTC--------------------CAGGGTCACTTGTGCT------------ i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10660969 134 - 16319837 GGTGCCCTCGGTCCCCTGCAGTCCCTGGATGCTTTCAAAGCCCTGGAGCATTGCATG-TACCTCTCTGCTGTCCCCC--TGCCCCTCCTGCC-----CTC--------------TGCC--------------CACTTC----------------------TCAGTCTCCCTG-----TTTC--------------------CAGGGTCACTTGTGCT------------ i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12284612 134 + 20526591 GGTGCCCTCGGTCCCCTGCAGTCCCTGGATGCTTTCAAAGCCCTGGAGCATTGCATG-TACCTCTCTGCTGTCCCCC--TGCCCCTCCTGCC-----CTC--------------TGCC--------------CACTTC----------------------TCAGTCTCCCTG-----TTTC--------------------CAGGGTCACTTGTGCT------------ i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119256542 134 + 128539186 GGTGCCCTCGGTCCCCTGCAGTCCCTGGATGCTTTCAAAGCCCTGGAGCACTGCATG-TACCTCTCTGCTGTCCCCC--TGCCCCTCCTGCC-----CTC--------------TGCT--------------CACTTC----------------------TCAGTCTCCCTG-----TTTC--------------------CAGGGTCACTTGTGCT------------ i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 598615 134 + 6255621 GGTGCCCTCGGTCCCCTGCAGTCCCTGGATGCTTTCAAAGCCCTGGAGCATTGCATG-TACCTCTCTGCTGTCCCCC--TGCCCCTCCTGCC-----CTC--------------TGCC--------------CACTTC----------------------TCAGTCTCCCTG-----TTTC--------------------CAGGGTCACTTGTGCT------------ i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4634204 134 - 8658521 GGTGCCCTCGGTCCCCTGCAGTCCCTGGATGCTTTCAAAGCCCTGGAGCATTGCATG-TCCCTCTCTGCTGTCCCCC--TGCCCCTCCTGCC-----CTC--------------TGCC--------------CACTTC----------------------TCAGTGTTCCTG-----TTTC--------------------CAGGGTCACTTGTGCT------------ i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114836384 131 + 124281992 G--GCCCTCAGTCCCCGGCAGTCCCTGGATGCTTTCAGAGCCCCGGAGCATCGCACATTACCTCTCTGCTGTCCCCC----CGACTCCTGCC-----TTC--------------TGCC--------------CACTTC----------------------TCAGCCTTCCTA-----TGTC--------------------CAGGGTCATTTGTTCT------------ i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 480541 130 - 9212255 G--GCCGTCGGTCCCCTGCGGTCCCTGGATGCTTTCAAAGCCCTGGAGCGTCGCACA-TACCTCTCTGCTGTCCCCT----CCCCTCCTGCC-----CTC--------------TGCC--------------CACTTC----------------------TCAGCCTTCCTG-----TTCC--------------------CAGGGTCACTTGTTCT------------ i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2899402 130 + 4466143 G--ACCCTCGCTCCCCTGCAGTCCCTGGATGCTTTCAAAGCCCTGGAGCATTGCACA-TACCTCTCTGCTGTCCCCT----CCCCTCCTGCC-----CTC--------------TGCC--------------CACTTC----------------------TCAGCCTTCCTG-----TGTC--------------------CAGGGTCACTTGTTCT------------ i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1602344 130 + 5364348 G--GCCCTCGGTCCCCTGCAGTCCCTGGATGCTTTCAAAGCCCTGGAGCATCACACA-TAcctctctgctgtccctt----ctcctcctgcc-----ctc--------------tgcc--------------cactTC----------------------TCAGCCTTCCTG-----TTTC--------------------CAGGGTCACTTGTTCT------------ i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4323884 126 + 7922563 AGCACCCTTGGT-CCCTGCAGTCCCTGGTGGCTTTCAAAGCT--------TTGCAAG-CATCTCTTTGCCATCCCCT---GCCACTCCTATC-----CTC--------------TGCC--------------TATTTT--------------------CATAAGCCTTCCTG-----TTTC--------------------CAGGGTAACTTGCACC------------ i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124821124 89 + 151834684 GGTTCACTTTATACCCCACAGTCC----------------------------------AGCCTC--TGCTACCCCAG------------GCC-----ATC--------------TAGG--------------CTGTCA----------------------TCTGCCTCCCTG-----TTTC--------------------CATGGTAACTGAGGCC------------ i mm10.chr5 I 41 C 0 s canFam3.chr26 33177229 151 - 38964690 -----GGTAGGTGCTCTGCAAACC----------------TCCACAAGCATTGCATG-GATTTCTTTGCTGCTCCCTCCTGCTCCTGCTGTC-----TGCATTCCTTGCTTTCTTGCC--------------CATTTCGTAAGTCATTCTGGTTATGGTGTAAGTCTCTCCA-----TTTC--------------------CACGGTGGTGCGCACC------------ i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 861322 190 - 1116856 ACTGTCCCTGGTCCTCTTCACATGCAGGTGGCTTTCAACCCCCAGGAGCCCTGCATT-GATTTCTTTGCTGcacccc--accccaccctaccccacGCTC--------------TGCCTTCTCACTTTCTTGCCCATT----------------------TCAGCCTCCCTGGTTGTTTTCATTTGGTAGTACCTTTTAGGTAGGGGAATTTGTTTGATATCGGGCCCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9483616 429 - 31815103 I e proCoq1.NW_012154285v1 6737863 341 - 9870158 I a score=35780.000000 s hg38.chr12_KI270834v1_alt 92221 2 + 119498 TT s panTro5.chr12 127377767 2 + 137163284 TT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125728074 2 + 135337776 TT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8241703 2 - 8369578 TT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97900110 2 + 106955855 TT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124014343 2 + 133663169 TT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128262433 2 + 137757926 TT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10661103 2 - 16319837 TT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12284746 2 + 20526591 TT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119256676 2 + 128539186 TT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 598749 2 + 6255621 TT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4634338 2 - 8658521 TT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114836515 2 + 124281992 TT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 480671 2 - 9212255 TT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2899532 2 + 4466143 TT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1602474 2 + 5364348 TT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6738204 2 - 9870158 TT i proCoq1.NW_012154285v1 I 341 C 0 s otoGar3.GL873618 4324011 2 + 7922563 TT i otoGar3.GL873618 I 1 C 0 s mm10.chr5 124821213 2 + 151834684 CT i mm10.chr5 C 0 C 0 s canFam3.chr26 33177380 2 - 38964690 TT i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 861512 2 - 1116856 TT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9483616 429 - 31815103 I a score=5576061.000000 s hg38.chr12_KI270834v1_alt 92223 286 + 119498 TCTTCAGGTCTCAGAGAAACTCAAGCTGGCGGAGAAGACAGCCTTGGACATCGACAGGCTGCGGGATGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTGTTCTTCGTCCTGTCTGAGATGGCCCTGGTGAACTCCATGTACCAGTACTCCCTGATTGCCTTCTTAGAGGTCTTCAGGCTGTCACTGAAGAAGTCGCTGCCTGATTCCATCCTCATGAAACGCCTGAGGAACATCATGGACACGCTGACCTTCAGCATCTATAACCACGGCTGCACAGGTGAG s panTro5.chr12 127377769 286 + 137163284 TCTTCAGGTCTCAGAGAAACTCAAGCTGGCGGAGAAGACAGCCTTGGACATCGACAGGCTGCGGGATGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTGTTCTTCGTCCTGTCTGAGATGGCCCTGGTGAACTCCATGTACCAGTACTCCCTGATTGCCTTCTTAGAGGTCTTCAGGCTGTCACTGAAGAAGTCGCTGCCTGATTCCATCCTCATGAAACGCCTGAGGAACATCATGGACACGCTGACCTTCAACATCTATAACTACGGCTGCACAGGTGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125728076 286 + 135337776 TCTTCAGGTCTCAGAGAAACTCAAGCTGGCGGAGAAGACAGCCTTGGACATCGACAGGCTGCGGGATGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTGTTCTTCGTCCTGTCTGAGATGGCCCTGGTGAACTCCATGTACCAGTACTCCCTGATTGCCTTCTTAGAGGTCTTCAGGCTGTCACTGAAGAAGTCGCTGCCTGATTCCATCCTCATGAAACGCCTGAGGAACATCATGGACACGCTGACCTTCAACATCTATAACTACGGCTGCACAGGTGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8241705 286 - 8369578 TCTTCAGGTCTCAGAGAAACTCAAGCTGGCGGAGAAGACAGCCTTGGACATCGACAGGCTGCGGGATGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTTTTCTTCGTCCTGTCTGAGATGGCCCTGGTGAACTCCATGTACCAGTACTCCCTGATTGCCTTCTTAGAGGTCTTCAGGCTGTCACTGAAGAAGTCGCTGCCTGATTCCATCCTCATGAAACGCCTGAGGAACATCATGGACACGCTGACCTTCAACATCTATAACTACGGCTGCACAGGTGAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97900112 286 + 106955855 TCTTCAGGTCTCAGAGAAACTCAAGCTGGCAGAGAAGACAGCCTTGGACATCGACAGGCTGCGGGATGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTGTTCTTTGTCCTGTCTGAGATGGCCCTGGTGAACTCCATGTACCAGTACTCCCTGATTGCCTTCTTAGAGGTCTTCGGGCTGTCACTGAAGAAGTCGCTGCCTGATTCCATTCTCATGAAACGCCTGAGGAACATCATGGACACGCTGACCTTCAACATCTATAACTACGGCTGCACAGGTGAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124014345 286 + 133663169 TCTTCAGGTCTCAGAGAAACTCAAGCTGGCAGAGAAGACAGCCTTGGACATCGACAGGCTGCGGGATGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTGTTCTTCGTGCTGTCTGAGATGGCCCTGGTGAACTCCATGTACCAGTACTCCCTGATTGCCTTCTTAGAGGTCTTCGGGCTGTCATTGAAGAAGTCGCTGCCCGATTCCATTCTCATGAAACGCCTGAGGAACATCATGGACACACTGACCTTCAACATCTATAACTACGGCTGCACGGGTGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128262435 286 + 137757926 TCTTCAGGTCTCAGAGAAACTCAAGCTGGCGGAGAAGACAGCCTTGGACATCGACAGGCTGCGGGATGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTGTTCTTCGTGCTGTCTGAGATGGCCCTGGTGAACTCCATGTACCAGTACTCCCTGATTGCCTTCTTAGAGGTCTTCGGGCTGTCATTGAAGAAGTCGCTGCCCGATTCCATTCTCATGAAACGCCTGAGGAACATCATGGACACACTGACCTTCAACATCTATAACTACGGCTGCACGGGTGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10661105 286 - 16319837 TCTTCAGGTCTCAGAGAAACTCAAGCTGGCGGAGAAGACAGCCTTGGACATCGACAGGCTGCGGGATGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTGTTCTTCGTGCTGTCTGAGATGGCCCTGGTGAACTCCATGTACCAGTACTCCCTGATTGCCTTCTTAGAGGTCTTCGGGCTGTCATTGAAGAAGTCGCTGCCCGATTCCATTCTCATGAAACGCCTGAGGAACATCATGGACACACTGACCTTCAACATCTATAACTACGGCTGCACGGGTGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12284748 286 + 20526591 TCTTCAGGTCTCAGAGAAACTCAAGCTGGCGGAGAAGACAGCCTTGGACATCGACAGGCTGCGGGATGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTGTTCTTCGTGCTGTCTGAGATGGCCCTGGTGAACTCCATGTACCAGTACTCCCTGATTGCCTTCTTAGAGGTCTTCGGGCTGTCACTGAAGAAGTCGCTGCCCGATTCCATTCTCATGAAACGCCTGAGGAACATCATGGACACACTGACCTTCAACATCTATAACTACGGCTGCACGGGTGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119256678 286 + 128539186 TCTTCAGGTCTCAGAGAAACTCAAGCTGGCGGAGAAGACAGCCCTGGACATCGACAGGCTGCGGGACGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTGTTCTTCGTCCTGTCTGAGATGGCCCTGGTGAACTCCATGTACCAGTACTCCCTCATTGCCTTCTTAGAGGTCTTCAGGCTGTCACTGAAGAAGTCGCTGCCCGATTCCATTCTCATGAAACGCCTGAGGAACATCATGGACACACTGACCTTCAACATCTATAACTACGGCTGCACGGGTGAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 598751 286 + 6255621 TCTTCAGGTCTCAGAGAAACTCAAGCTGGCGGAGAAGACAGCCTTGGACATCGACAGGCTGCGGGATGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTGTTCTTCGTGCTGTCTGAGATGGCCCTGGTGAACTCCATGTACCAGTACTCCCTGATTGCCTTCTTAGAGGTCTTCGGGCTGTCACTGAAGAAGTCGCTGCCCGATTCCATTCTCATGAAACGCCTGAGGAACATCATGGACACACTGACCTTCAACATCTATAACTACGGCTGCACGGGTGAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4634340 286 - 8658521 TCTTCAGGTCTCAGAGAAACTCAAGCTGGCAGAGAAGACAGCCTTGGACATCGACAGGCTGCGGGATGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTGTTCTTCGTCCTGTCTGAGATGGCCCTGGTGAACTCCATGTACCAGTACTCCCTGATTGCCTTCTTAGAGGTCTTTGGGCTGTCACTGAAGAAGTCGCTGCCCGATTCCATTCTCATGAAACGCCTGAGGAACATCATGGACACACTGACCTTCAACATCTATAACTACGGCTGCACGGGTGAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114836517 286 + 124281992 TCTTCAGGTCTCAGAGAAACTCAAGCTAGCGGAGAAGACGGCCTTGGACATTGACAGGCTGCGGGACGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTGTTCTTTGTGCTGTCCGAGATGGCCCTGGTGAACGCCATGTACCAGTACTCCCTGATCGCCTTCTTAGAGGTCTTCAGGCTGTCACTGAAGAAGTCACTGCCTGATTCCGTTCTCATGAAACGCCTAAAGAATATCATGGACACACTGACCTTCAACATCTATAACTACGGCTGCACGGGTGAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 480673 286 - 9212255 TCTTCAGGTCTCAGAGAAACTCAAGCTAGCGGAGAAGATGGCCTTGGACATTGACAGGCTGCGGGACGGCTACCGGCCGGCGGCCAGGAGGGGGGCCATCCTGTTCTTTGTGCTGTCCGAGATGGCCCTGGTGAATGCCATGTACCAGTACTCCCTGATCGCCTTCTTAGAGGTCTTCGGGCTGTCACTGAAGAAGTCACTGCCTGATTCCATTCTCGTGAAACGCCTGAAGAATATCATGGACACGCTGACCTTCAACATCTACAACTACGGCTGCACGGGTGAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2899534 286 + 4466143 TCTTCAGGTCTCAGAGAAACTCAAGCTAGCGGAGAAGACGGCCTTGGACATTGACAGGCTGCGGGACGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTGTTCTTTGTGCTGTCCGAGATGGCCCTGGTGAATGCCATGTGCCAGTACTCCCTGATCGCCTTCTTAGAGGTCTTCGGACTGTCACTGAAGAAGTCACTGCCTGATTCCATTCTCATGAAACGCCTGAAGAATATCATGGACACGCTGACCTTCAACATCTATAACTACGGCTGCACGGGTGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1602476 286 + 5364348 TCTTCAGGTCTCAGAGAAACTCAAGCTAGCGGAGAAGACGGCCTTGGACATTGACAGGCTGCGGGACGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTGTTCTTCGTGCTGTCCGAGATGGCCCTGGTGAACGCCATGTACCAGTACTCCCTGATCGCCTTCTTAGAGGTCTTCAGGCTGTCACTGAAGAAGTCACTGCCTGATTCCATTCTCATGAAACGCCTGAAGAATATCATGGACACGCTGACCTTCAGCATCTATAACTACGGCTGCACGGGTGAG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9484045 286 - 31815103 TCTCCAGGTGTCGGAGAAGCTCAAGCTGGCGGAGAAGACGGCCTTGGACATCGACCGGCTGCGGGACGGCTACCGGCCGGCCGCCAGGAGGGGGGCCATCCTGTTCTTCGTCCTGTCGGAGATGGCCCTGGTGAACTCCATGTACCAGTACTCCCTCACCGCCTTCCTGGAGGTCTTCGGCTTGTCCCTGAAGAAGTCGCTGCCTGACTCCATTCTCTTGAAGCGGCTGAAGAACATCATGGACACGCTGACCTTCAACATCTACAACTACGGCTGCACCGGTGAg i micMur3.chr21 I 429 C 0 s proCoq1.NW_012154285v1 6738206 286 - 9870158 TCCTCAGGTATCGGAGAAGCTCAAGCTGGCGGAGAAGACAGCCTCGGACATCGACCGGCTGCGGGACGGCTACCGGCCGGCCGCCAGGAGGGGCGCCATCCTGTTCTTCGTGCTGTCGGAGATGGCCCTCGTGAACTCCATGTACCAGTACTCCCTGGTCGCCTTCTTGGAGGTCTTCGGGTTGTCGCTGAAGAAGTCGCTGCCCGATTCCATTCTCACGAAGCGACTGAAGAACATCATGGACACGCTGACCTTCAACATCTATAACTACGGCTGCACAGGTGAG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4324013 285 + 7922563 TCTTCAGGTATCAGAGAAGCTCAGGCTGGCAGAGAAGACGGCCCTGGACATTGACAGATTACGAGATGGCTACCGGCCAGCTGCCAGGAGGGGGGCCATCCTGTTCTTCGTCCTGTCCGAGATGGCCCTTGTGAACTCCATGTATCAGTACTCCCTGATAGCCTTCTTAGATGTTTTTGGGTTCTCACTTAAGAAGTCGCTGCCCGACTCCATTCTCATAAAGCGATTAAAGAACATCATGGACACGCTGACTTTCAACATCTATAACTATGGCTGCACAGGTGA- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124821215 286 + 151834684 TCTGCAGGTTTCAGAGAAGCTGAAGCTGGCGGAGAAGACAGCCCTGGACATTGACAGGCTGCGGGACGGCTACCGGCCAGCCGCGAGACGGGGCGCCATTCTGTTCTTCGTGCTGTCGGAGATGGCGCTTGTCAACTCCATGTACCAGTACTCCCTCATAGCCTTCCTTGAGGTCTTCGGGCTGTCGCTGAAGAAGTCACTACCCGACTCCATCCTTCTAAAGCGGCTGAAAAACATCATGGACACCTTGACCTTCAACATCTACAACTATGGATGCACCGGTGAG i mm10.chr5 C 0 I 1079 s canFam3.chr26 33177383 286 - 38964690 GCTTTAGGTATCGGAGAAGCTCAAGCTGGCGGAGAAGACGGCTTTGGACATAGACAGGCTGCGAGATGGCTACCGGCCGGCTGCCAGGAGGGGGGCCATCCTGTTCTTTGTGCTGTCCGAGATGGCCCTGGTGAACGCCATGTACCAGTACTCCCTCATCGTCTTCTTAGAGGTCTTTGGCTTGTCACTTAAGAAGTCCCTGCCTGATTCCATTCTCATGAAGCGATTACAGAACATTATGGACACGCTGACTTTCAACATCTATAACTACGGTTGCACGGGTGAG i canFam3.chr26 I 1 I 3 s dasNov3.JH568189 861514 286 - 1116856 TCTTTAGGTGTCAGAGAAGCTCAAGCTGGCAGAGAAGACAGCTGTGGACATCGACAGGCTGCGGGATGGCTACCGGCCGGCCGCCAGGCGTGGGGCCATCCTGTTCTTTGTTCTGTCCGAGATGGCCCTCGTGAACTCCATGTACCAGTACTCCCTGATCGCCTTCTTGGATGTCTTTGGGTTGTCACTTAAGAAGTCGCTGCCTGATTCCATTCTTATGAAGCGACTGAGGAACATTATGGACACATTGACCTTCAACATCTATAACTACGGTTGCACAGGTGAT i dasNov3.JH568189 C 0 I 3 a score=19000.000000 s hg38.chr12_KI270834v1_alt 92509 1 + 119498 C s panTro5.chr12 127378055 1 + 137163284 C i panTro5.chr12 C 0 C 0 s panPan2.chr12 125728362 1 + 135337776 C i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8241991 1 - 8369578 C i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97900398 1 + 106955855 C i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124014631 1 + 133663169 C i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128262721 1 + 137757926 C i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10661391 1 - 16319837 C i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12285034 1 + 20526591 C i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119256964 1 + 128539186 C i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 599037 1 + 6255621 C i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4634626 1 - 8658521 C i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114836803 1 + 124281992 C i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 480959 1 - 9212255 C i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2899820 1 + 4466143 C i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1602762 1 + 5364348 C i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9484331 1 - 31815103 c i micMur3.chr21 C 0 I 5339 s proCoq1.NW_012154285v1 6738492 1 - 9870158 C i proCoq1.NW_012154285v1 C 0 I 4624 s canFam3.chr26 33177672 1 - 38964690 C i canFam3.chr26 I 3 C 0 s dasNov3.JH568189 861803 1 - 1116856 C i dasNov3.JH568189 I 3 C 0 e mm10.chr5 124821501 1079 + 151834684 I e otoGar3.GL873618 4324298 0 + 7922563 C a score=199514.000000 s hg38.chr12_KI270834v1_alt 92510 20 + 119498 TCTCCCCACAGAGGAGGACA s panTro5.chr12 127378056 20 + 137163284 TCTCCCCACAGAGGAGGACA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125728363 20 + 135337776 TCTCCCCACAGAGGAGGACA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8241992 20 - 8369578 TCTCCCCACAGAGGAGGACA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97900399 20 + 106955855 TCTCCCCACAGAGGAGGACA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124014632 20 + 133663169 TGTCCCCACGGAGGAGGACA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128262722 20 + 137757926 TGTCCCCACGGAGGAGGACA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10661392 20 - 16319837 TGTCCCCACGGAGGAGGACA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12285035 20 + 20526591 TCTCCCCACAGAGGAGGACA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119256965 20 + 128539186 TCTCCCCACGGGGGAGGACA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 599038 20 + 6255621 TCTCCCCACAGAGGAGGACA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4634627 20 - 8658521 TCTCCCCACGGAGGAGGACA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114836804 20 + 124281992 CCTCCCCAAAGGGGAGGACA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 480960 20 - 9212255 CCTCTCCGAAGAGGGGGACA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2899821 20 + 4466143 CCTCCCCGAAGAGGAGGACA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1602763 20 + 5364348 CCTCCCCGAAGAGGAGGACA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4324298 8 + 7922563 ------------TGAATATG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33177673 20 - 38964690 TCTCTGCCCTGATTAGGACA i canFam3.chr26 C 0 I 8 s dasNov3.JH568189 861804 20 - 1116856 TCTTTACACTAATTAGGACA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I a score=710973.000000 s hg38.chr12_KI270834v1_alt 92530 78 + 119498 TGTTAGTGTAGTTTGG--TGTGCCAGACGT-GGCTTTAAGGAAACGTGATCTGTGAAAATGGAAA--GTTACCAAATAGCATT s panTro5.chr12 127378076 78 + 137163284 CGTTAGTGTAGTTTGG--TGTGCCAGATGT-GGCTTTAAGGAAACGTGATCTGTGAAAATGGAAA--GTTACCAAATGGCATT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125728383 78 + 135337776 CGTTAGTGTAGTTTGG--TGTGCCAGACGT-GGCTTTAAGGAAACGTGATCTGTGAAAATGGAAA--GTTACCAAATGGCAtt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8242012 78 - 8369578 CGTTAGTGTAGTTTGG--TGTGCCAGACGT-GGCTTTAAGGAAACGTGATCTGTGAAAATGGAAA--GTTACCAAATGGCATT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97900419 78 + 106955855 CATCAGTGTAGCCTGG--TGTGCCAGATGT-GGCTTTAAGGAAATGTGATATGTGAAAATGGAAA--GTTACCAAATGGCAtt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124014652 77 + 133663169 CATTCGTGTAGCTTGG--TGTGCCAGATGT-GGCTTTAACGAAACGTGGTCTGTGAAAACAGAAA--CTTACCAAATGGCAT- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128262742 77 + 137757926 CATTCGTGTAGCTTGG--TGTGCCAGATGT-GGCTTTAACGAAACGTGGTCTGTGAAAACAGAAA--CTTACCAAATGGCAT- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10661412 77 - 16319837 CATTCGTGTAGCTTGG--TGTGCCAGATGT-GGCTTTAACGAAACGTGGTCTGTGAAAACAGAAA--CTTACCAAATGGCAT- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12285055 77 + 20526591 CATTCGTGTGGCTTGG--TGTGCCAGATGT-GGCTTTAACGAAACGTGGTCTGTGAAAACAGAAA--CTTACCAAATGGCAT- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119256985 76 + 128539186 CATTCGTGTAGTGTGG--TGTACCAGATGT-GGCTTTAAGGAAACGTGGTCTGTGAAAATGGAAA--CTTACCAAATGGCA-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 599058 77 + 6255621 CGTTCGTGTAGCTTGG--TGTGCCAGATGT-GGCTTTAACGAAACGTGGTCTGTGAAAACAGAAA--CTTACCAAATGGCAT- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4634647 77 - 8658521 CGTTCGTGTAGTTTGG--TGTGCCAGATGC-GGCTTTAAGGAAACGTGGTCTGTGAAAATGGAAA--CTTACCAAACGGCAt- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114836824 77 + 124281992 AGTGTGGCGAGTTTGG--TGTGCCAGATGTGGGCTGTAAGGAAACTTGGTCGGTGAAAATGGAAAACTTTACCAAATGG---- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 480980 76 - 9212255 AGTGTGGCGAGTTTGG--TGTGCCAGATGT-GGCTTTAAGGAAACTTGGTCGGTGAAAATGGAAA--CTTACCAAATGGCA-- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2899841 77 + 4466143 AGTGTGGCAAGTTTGG--TGTACCAGATGT-GGCTTTAAGGAAACTTGGTCGGTGAAAATGGAAA--CTTACCAAATGGCAt- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1602783 76 + 5364348 GGTGTGGCGAGTTTGG--TGTGCCAGATGT-AGCTTTAAGGAAACTTGGTCAGTGAAAATGGAAA--CTTAGCAAATGGCA-- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4324306 79 + 7922563 AGCACGTGCAGTTTTGTTTGTGTAATATGG-GGCTTTAAGGAAACCTGGTCTGTG-AAATGGAAA--CTTATCAAAAGGCATT i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 861824 78 - 1116856 AATGAGCGCAGTACAA--GGGGTATAACAT-AGAGTGTGGGAAACTTGATCTGTGAAAATGAAAA--CTTACCCAACAGCATT i dasNov3.JH568189 C 0 I 17 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e canFam3.chr26 33177693 8 - 38964690 I a score=4850.000000 s hg38.chr12_KI270834v1_alt 92608 4 + 119498 TTTT s panTro5.chr12 127378154 4 + 137163284 TTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125728461 4 + 135337776 tttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8242090 4 - 8369578 TTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97900497 4 + 106955855 tttt i nomLeu3.chr10 C 0 C 0 s otoGar3.GL873618 4324385 4 + 7922563 CTTT i otoGar3.GL873618 C 0 I 3804 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 861902 17 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e aotNan1.NW_018491581v1 1602859 0 + 5364348 C e cebCap1.NW_016107484v1 2899918 0 + 4466143 C e saiBol1.JH378194 481056 0 - 9212255 C e calJac3.chr9 114836901 0 + 124281992 C e colAng1.NW_012116043v1 4634724 0 - 8658521 C e manLeu1.NW_012103587v1 599135 0 + 6255621 C e chlSab2.chr11 119257061 0 + 128539186 C e cerAty1.NW_012001186v1 12285132 0 + 20526591 C e macNem1.NW_012010578v1 10661489 0 - 16319837 C e macFas5.chr11 128262819 0 + 137757926 C e rheMac8.chr11 124014729 0 + 133663169 C a score=1106365.000000 s hg38.chr12_KI270834v1_alt 92612 146 + 119498 CTTTTTtctttctttctttc---------tt---tttcttttttttttgagatagggtctt--gctccatc--acccaggctggaatgcagtggtgcgatcacggctcactgcaacctccacc--tcccagg--ctcaggtgatcctccta-cctcagcctccagag s panTro5.chr12 127378158 149 + 137163284 CTTTTTTCTttctttctttcttt------tt---ttttttttttttttgagatagggtctt--gctccatc--acccaggctggaatgcagtggtgcaatcacggctcactgcaacctctacc--tcccagg--ctcaggtgatcctccta-cctcagcctccagag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125728465 150 + 135337776 cttttttctttctttctttctttc-----tt---ttttttttttttttgagatagggtctt--gctccatc--acccaggctggaatgcagtggtgcaatcacggctcactgcaacctctacc--tcccagg--ctcaggtgatcctccta-cctcagcctccagag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8242094 144 - 8369578 CTTTtttctttctttctt-----------tt---ttttttttttttttgagatagggtctt--gctccatc--acccaggctggaatgcagtggtgcgatcacggctcactgcaacctccacc--tcccagg--ctcaggtgatcctccta-cctcagcctccagag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97900501 155 + 106955855 ttcttttttctttttctttctttcttttttt---ttttttttttttttgagataaggtctt--gctccgtc--acccaggctggaatgcagtggtgcgatcacggctcactgcaacctccatc--tcccagg--ctcaggtgatcctccta-cctcagcctccagag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124014729 143 + 133663169 -TTTtttctttctttctt-----------tc---ttttttttttgtttgagatagggtctt--gctccatc--accccggcaggagtgcagtggtgcaatcacagctcactgcaacctccacc--tcccagg--ctcaggtgatcctccta-cctcagcctgcagag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128262819 146 + 137757926 -TTTTTTCtttctttctt-----------tctttttttttttttgtttgagatagggtctt--gctccatc--accccggcaggagtgcagtggtgcaatcacagctcactgcaacctccacc--tcccagg--ctcaggtgatcctccta-cctcagcctgcagag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10661489 143 - 16319837 -TTTtttctttctttctt-----------tc---ttttttttttgtttgagatagggtctt--gctccatc--accccggcaggagtgcagtggtacaatcacagctcactgcaacctccacc--tcccagg--ctcaggtgatcctccta-cctcagcctgcagag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12285132 143 + 20526591 -TTTtttctttctttctt-----------tc---ttttttttttgtttgagatagggtctt--gctccatc--accccggcaggagtgcagtggtgcaatcacagctcactgcaacctccacc--tcccagg--ctcaggtgatcctccta-cctcagcccccagag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119257061 141 + 128539186 -Ttttttctttctttctt-----------tt---tttttttgt--tttgagatagggtctt--gctccatt--acccaggcaggagtgcagtggtgcgatcacagctcactgcaacctccacc--tcccagg--ctcaggtgatcctccta-ccacagcctgcagag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 599135 143 + 6255621 -TTTtttctttctttctt-----------tc---tttcttttttgtttgagatagggtctt--gctccatc--accccggcaggagtgcagtggtgcaatcacagctcactgcaacctccacc--tcccagg--ctcaggtgatcctccta-cctcggcccccagag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4634724 134 - 8658521 -ttttttcttt-----------------------ctttttttttgtttgagatagggtctt--gctccatc--acccaggctggagtgcagtggtgcgatcacagctcactgcaacctccacc--tcccagg--ctcaggtgatcctccta-cctcaccctccagag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114836901 135 + 124281992 -----------------G-----------Ct---ttttttttttttttgaaatagggtccttggttccattcaccccggctggga-tggcaggggggcattcaagctcactgcaactctcccccgtcctggggctccgggggatcctcccaccctccgcctccagag i calJac3.chr9 C 0 I 1515 s saiBol1.JH378194 481056 125 - 9212255 -----------------t-----------tt---ttttttttttttttgagatagggtctt--gctccat---caccaggctgga-tgcagtggcgccatcacagctcactgcaacctccacc--tcctggg--ctcaggtgatcctccca-cctcagcctccagag i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2899918 109 + 4466143 --------------tttt-----------tt---ttttttttttttttgaaatagggtctt--gctccatc--acccaggctgga-tgcagtggtacc--------------------ctacc--tcctggg--ctcaggtgatcctccca-cctcagcctccagag i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1602859 123 + 5364348 -----------------t-----------tt---ttttttttttttttgagatagggtctt--gctcc-----actcaggctgga-tgcagtggttccatcacagctcgctgcaacctccacc--tcctggg--ctcaggagatcctccca-cctcagcctccagag i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 861902 17 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I a score=829441.000000 s hg38.chr12_KI270834v1_alt 92758 97 + 119498 tagctgggacta-aaggcacgccaccacacccagctaagtttttgtatattttgtagagatggggtttcactat-------gttgcccaggctggtctcgaactc s panTro5.chr12 127378307 97 + 137163284 tagctgggacta-aaggcatgccaccacacccagctaagtttttgtatattttgtagagatggggtttcactat-------gttgctcaggctggtctcgaactc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125728615 97 + 135337776 tagctgggacta-aaggcatgccaccacacccagctaagtttttgtatattttgtagagatggggtttcactat-------gttgctcaggctggtctcgaactc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8242238 104 - 8369578 tagctgggacta-aaggcacgccaccacacccagctaggtttttgtatattttgtagagatggggttttactatgttgcccgttgcccaggctggtctcgaactc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97900656 97 + 106955855 tagctgggacta-aaggcatgccaccacacccagctaagtttttgtatattttgtagagatggggtttcactat-------gttgcctaggctggtctcgaactc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124014872 98 + 133663169 tagctgggactacaaggcatgccaccacgcccagctaagtttttgtgtattttgtacagatggggtttcactat-------gttgcccaggctggtctcaaactc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128262965 98 + 137757926 tagctgggactacaaggcacgccaccacgcccagctaagtttttgtgtattttgtacagatggggtttcactat-------gttgcccaggctggtctcaaactc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10661632 98 - 16319837 tagctgggactacaaggcacgccaccacgcccagctaagtttttgtgtattttgtacagatggggtttcactat-------gttgcccaggctggtctcaaactc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12285275 98 + 20526591 tagctgggactacaaggcacgccaccacgccccgctaagtttttgtgtattttgtagagatggggtttcactat-------gttgcccaggctggtctcgaactc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119257202 98 + 128539186 tagctgggactacaaggcacgccaccatgcccagctaagtttttgtgtattttgtagagatggggtttcactat-------gttgcccaggctggtctcaaactc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 599278 98 + 6255621 tagctgggactacaaggcacgccaccatgccccgctaagtttttgtgtattttgtagagatggggtttcactat-------gttgcccaggctggtctcgaactc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4634858 98 - 8658521 tagctgggactacaaggcacgccaccatgcccagctaagtttttgtgtattttgtagagatggggtttcactat-------gttgcccaggctggtctcgaactc i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 481181 97 - 9212255 tagctgggactacagggcatgccactatacgcagctaa-tttttgtatattttgtagagatggggtttcactgt-------gttgcccaggctggtctagaactc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2900027 97 + 4466143 tagctgggactacagggcatgctgctatatgcagctaa-ttttggtatattttgtagagatggggtttcactgt-------gttgcccaggctggtctagaactc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1602982 97 + 5364348 tagctgggactacagggcatgccactatatgcagctaa-tttttgtatattttgtagagatggggtttcactgt-------gctgcccaggctggtctagaactc i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 861902 17 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I e calJac3.chr9 114837036 1515 + 124281992 I a score=460877.000000 s hg38.chr12_KI270834v1_alt 92855 43 + 119498 ctgagctcaaacgatccacccaccttggcctcctgaagtgctg s panTro5.chr12 127378404 43 + 137163284 ctgagctcaaacgatccacccaccttggcctcctgaagtgctg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125728712 43 + 135337776 ctgagctcaaacgatccacccaccttggcctcctgaagtgctg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8242342 43 - 8369578 ctgagctcaaacgatccacccaccttggcctcctgaagtgctg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97900753 43 + 106955855 ctgagctcaaacgatccacccaccttggcctcccgaagtgctg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124014970 43 + 133663169 ctgagctcaaacgatccacccaccttggcctcccgaagtgctg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128263063 43 + 137757926 ctgagctcaaacgatccacccaccttggcctcccgaagtgctg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10661730 43 - 16319837 ctgagctcaaacgatccacccaccttggcctcccgaagtgctg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12285373 43 + 20526591 ctgagctcgaatgatccacccaccttggcctcccgaagtgctg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119257300 43 + 128539186 ctgagctcaaatgatccacccaccttggcctcccaaagtgctg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 599376 43 + 6255621 ctgagctcgaacgatccacccaccttggcctcctgaagtgctg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4634956 43 - 8658521 ctgagctcaaacgatccacccaccttggcctcccgaagtgctg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114838551 43 + 124281992 ctgagctcaaacgatccacccaccttggcctcccaaagtgcta i calJac3.chr9 I 1515 C 0 s saiBol1.JH378194 481278 43 - 9212255 ctgagctcaaacaatccagccacctcggcctcccaaagtgcta i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2900124 43 + 4466143 ctgagctcaaacgatccacccacctcggcctcccaaagtgcta i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1603079 43 + 5364348 ctgagctcaaacgatccacccaccttggcctcccaaagtgcta i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 861902 17 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I a score=12524961.000000 s hg38.chr12_KI270834v1_alt 92898 1355 + 119498 ggattacgaggtgtgagccatcatgcccagcTCCGAATGGCATTCTTGAGTCTGGCGATTCATGTTACAAGAGGAATGTTTAAAGCACTGAAttttaagatagcagc-tttattgagacacaatttacataccataaa-ttcgtccttt-aaaaatataccattcggtggtgattcatagcatatacatagagttgtgcagctatcactactctctggctccggaacgtttccaccagccccgaaatgaaatcccatacccat---tagcagtca--ccccctggccccccactcctagtccctggcagtcaccg------------------------------------------------------------------------------ctctgccttccatctgtaaggatttacttgctctgaacacttcatgtc--aatggcatcatacggtgtgtgac--ttcatgactggtatctttcactccactccgtgacctcacggttcatccgtgttgctgcgtgtgtcagcgcttcattcctgcctgtggctgagtcacattccat-gtatggacagaccgcactgtgtttatccacccgtcacctgatgggcatttgggttgtttc-gcttgttttgctattaaggc--aatgctcctgtgaacatttgtgtgcaggtttttgtgtgaatgtgtgtttttaattctctt-gggggtatatctagaaagggaactgctgggtcatagggtaattctatgtctaac-ttttgaggaactgccaaactgttttccaaagtgactacagtatatttaaacccctaAATCATTGA-ttttttcaaaagactttttattatgga-------aaacatatgcaaaagagaatagtgtcgtgatcgtctgcacagccctcacctggcaatgattagctctggatttgtttatatg--taacacggttccccatcaacccagattatgttgaaaatttgcttcatattcagatcac-ttatctgtaagtatgttagtttgtatctctaaaacagaggtcagcaaactttttctggaaagggtcagatagtaag----tgttttaggctttgaaggctaagtgatttctgccacaactactcacttctgcagttgtgtgccacaggccccactgggcatggtggcaattgtagcacaaaagcagccattggatgat------atggaagtgaatggccatggctgtgttccaataaaacttttttagcaaaaacaggcagcaggctggatttggccccttgcttgtggtttgcccatccctgctataaaatagaaggattctatctcaaaacatagacataaggccattatcatatccccaaattaataattcctgaatatcatcatat-tcaggttttcaaatgttcccaattgtcttatatgtcatgtttcacattattttaaatcaggacctca s panTro5.chr12 127378447 1433 + 137163284 ggattacgaggtgtgagccatgatgcccagcTCCGAATGGCATTCTTGAGTCTGGCGATTCATGTTACAAGAGGAATGTTTAAAGCACTGAAttttaagatagcagc-tttattgagacacaatttacataccataaa-ttcatccttt-aaaaatataccattcggtggtgattcatagcatatacatagagttgtgcagctatcactactctcttgctccggaacgtttccaccagccccgaaatgaaatcccatacccat---tagcagtca--ccccctggcccctcactcctagtacctggcagtcaccgctctgccttccatctgtaaggatttacttgctctgaacacttcatgtcaatggcatcatacggtgtgtgacttcattactctgccttccatctgtaaggatttacttgctctgaacacttcatgtc--aatggcatcatacggtgtgtgac--ttcataactggtgtctttcactccactccgtgacctcacggttcatccgtgttgctgcgtgtgtcagcgcttcattcctgtctgtggctgagtcacattccat-gtatggacagaccacactgtgtttatccatccgtcacctgatgggcatttgggttgtttc-gcttgttttgctattaaggc--aatgctcctgtgaacatttgtgtgcaggtttttgcgtgaatgtgtgtttttaattctctt-gggggtatatctagaaagggaactgctgggtcatagggtaattctatgtctaac-ttttgaggaactgccaaactgttttccaaagtgactacagtatatttcaaccccTAAATCATTGA-tttttttaaaaaactttttattatgga-------aaacatatgcaaaagagaacagtgtcgtgatcgtctgcgcagccctcacctggcaatgatcagctctggatttgtttatatg--taacacggttccccatcaacccagattatgttgaaaatttgcttcatattcagatcac-ttatctgtaagtatgttagtttgtatctctaaaacagaggtcagcaaactttttctggaaagggtcagagagtaag----tgttttaggctttgaaggctaagtgatttctgccacaactactcacttctgcagttgtgtgccacaggccccactgggcatggtggcaattgtagcacaaaagcagccattggatgat------atggaagtgaatggccatggctgtgttccaataaaactttagtagcaaaaacaggcagcaggctggatttggccccttgcttgtggtttgcccatccctgctataaaatagaaggattctatctcaaaacatagacataaggccattatcatacccccaaattaataattcctgaatatcatcatat-tcaggttttcaaatgttcccaattgtcttatatgtcatgtttcacattattttaaatcaggacctca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125728755 1432 + 135337776 ggattacgaggtgtgagccatgatgcccagcTCCGAATGGCATTCTTGAGTCTGGCGATTCATGTTACAAGAGGAATGTTTAAAGCACTGAAttttaagatagcagc-tttattgagacacaatttacataccataaa-ttcatccttt-aaaaatataccattcggtggtgattcatagcatatacatagagttgtgcagctatcactactctcttgctccggaacgtttccaccagccccgaaatgaaatcccatacccat---tagcagtca--ccccctggcccctcactcctagtccctggcagtcaccgctctgccttccatctgtaaggatttacttgctctgaacacttcatgtcaatggcatcatacggtgtgtgacttcattactctgccttccatctgtaaggatttacttgctctgaacacttcatgtc--aatggcatcatacggtgtgtgac--ttcataactggtgtctttcactccactccgtgacctcacggttcatccgtgttgctgcgtgtgtcagcgcttcattcctgtctgtggctgagtcacattccat-gtatggacagaccacactgtgtttatccatccgtcacctgatgggcatttgggttgtttc-gcttgttttgctattaaggc--aatgctcctgtgaacatttgtgtgcaggtttttgtgtgaatgtgtgtttttaattctctt-gggggtatatctagaaagggaactgctgggtcatagggtaattctatgtctaac-ttttgaggaactgccaaactgttttccaaagtgactacagtatatttcaaccccTAAATCATTGA--TTTTTAAAAAaactttttattatgga-------aaacatatgcaaaagagaacagtgtcgtgatcgtctgcgcagccctcacctggcaatgatcagctctggatttgtttatatg--taacacggttccccatcaacccagattatgttgaaaatttgcttcatattcagatcac-ttatctgtaagtatgttagtttgtatctctaaaacagaggtcagcaaactttttctggaaagggtcagatagtaag----tgttttaggctttgaaggctaagtgatttctgccacaactactcacttctgcagttgtgtgccacaggccccactgggcatggtggcaattgtaacacaaaagcagccattggatgat------atggaagtgaatggccatggctgtgttccaataaaactttattagcaaaaacaggcagcaggctggatttggccccttgcttgtggtttgcccatccctgctataaaatagaaggattctatctcaaaacatagacataaggccattatcatacccccaaattaataattcctgaatatcatcatat-tcaggttttcaaatgttcccaattgtcttatatgtcatgtttcacattattttaaatcaggacctca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8242385 1354 - 8369578 ggattacgaggtgtgagccatcatgcccagcTCCGAATGGCATTCTTGAGTCTGGCGATTCATGTTACAAGAGGAATGTTTAAAGCACTGAAttttaagatagcagc-tttactgagacacaatttacataccataaa-ttcatcctttaaaaaatataccattcggtggtgattcatagcatatacatagagttgtgcagctatcactactctcttgctccggaacgtttccaccagccccgaaatgaaatcccatacccat---tagcagtca---cccctggcccc-cactcctagtccctggcagtcactg------------------------------------------------------------------------------ctctgccttccatctgtaaggatttacttgctctgaacacttcatgtc--aatggcatcatacggtgtgtgac--ttcatgactggtgtctttcactccactccgtgacctcatggttcatccgtgttgctgcgtgtgtcagcgcttcattcctgtctgtggctgagtcacattccat-gtatggacagaccgcactgtgtttatccacccgtcacctgatgggcatttgggttgtttc-gcttgttttgctattaaggc--aatgctcctgtgaacatttgtgtgcaggtttttgtgtgaatgtgtgtttttaattctctt-gggggtatatctagaaagggaactgctggttcatagggtaattctatgtctaac-ttttaaggaactgccaaactgttttccaaaatgactacagtatatttcaaccccTAAATCATTGA-TTTTTTAAAAAaactttttattatgga-------aaacatatgcaaaagagaatagtgtcgtgatcgtctgcacagccctcgcctggcaatgatcagctctggatttgtttatatg--taacacggttccccatcaacccagattatgttgaaaatttgcttcatattcagatcac-ttatctgtaagtatgttagtttgtatctctaaaacagaggtcagcaaactttttctggaaagggtcagatagtaag----tgttttaggctttgaaggctaagtgatttctgccacaactactcacttctgcagttgtgtgccacaggccccactgggcatggtggcaattgtagcacaaaagcagccattggatgat------atggaagtgaatggccatggctgtgttccaataaaactttattagcaaaaacaggcagcaggctggatttggccccttgcttgtggtttgcccatccctgctataaaatagaaggattctatctcaaaacatagacataaggccattatcatacccccaaattaataattcctgaatatcatcatat-tcaggttttcaaatgttcccaattgtcttatatgtcatgtttcacattattttaaatcaggacctca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97900796 1353 + 106955855 ggattacgaggtgtaagccatcatgcccagcTCCAAATGGCATTCTTAAGTGTGGCGATGCATGTTACAAGAGGAATGTTTAAAGCACTGAAttttaagatagcagc-tttatcgagacacaatttacataccataaa-ttcgcccttt-aaaaatgtactattcggtggtgattcatagcatattcatagagttgtacagctatcactactctcttgcttcggaacgcttccaccagccccgaaatgaaatcccatacccat---tagcagtca--cccccttgtcccccactcctagtccctggcagtcacct------------------------------------------------------------------------------ctctgccttccgtcagtaaggatttacttgctctgaacacttcatgtc--aatggcatcatatgctgtgtgac--ttcgtgactggcatctttcactccacttcgtgacctcacggttcatctgtgttgctgtgtgtgtcagcacttcattcctgtctgcggctgagtcacattccat------gacagactacactgtgtttatccacctgtcacctgatgggcatttgggttgtttc-gctttttttgctattaagac--aatgctcctgtgaacatttgtgtgcaggtttttgtgtgaatgtgtgtttttaattctctt-ggtggtatatctagaaggggaactgctgggtcatagggtaattctatgtctaac-ttttgaggaactgccaaactgttttccaaagtgactgcaatatatttcaaccccTAAATCATTGAtttttttaaaaaaactttttattatgaa-------aaacatgtgcaaaagagaatagtgtcatgatcgtctgcacagccctcacctggcaatgatcagctctggatttgtttatgtg--taacacgattccccatcaacccagattatgttgaaaatttgcttcatattcagatcac-ttatctgtaagtgtattagtttgtatctctaaaacagaggtcagcaaactttttctggaaagggtcagatagta--------ttttaggctttgaaggctaagtgatttctgccacaactactcacttctgcaattgtgtgccacaggccccactgggcatggtggcaattgtagcacaaaagcagccattggatgatatgtgaatggaagtgaatggccatggctgtgttccaataaaactttattagcaaaaacaggcagcaggctggatttggccccttgcttgtggtttgcccatccctgctataaaatagaaagattctatctcaaaacatagacataaggccattatcataccctcaaattaataattcctgaatatcatcatat-tcaggttttcaaatgttcccaattgtcttatatgtcatatttcacattattttaaatcaggacctca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124015013 1305 + 133663169 ggatgacgaggtatgagccatcatgcccagcTCCGAATGGCATTCTTAAGTGTGGCGATTCATGTTACAAGAAGAATGTTTAAAGCATTGAAttttaagatagcagc-tttattgagatacaatttacataccataaa-ttcgcccttt-aaaaatgtacagtt---tggtgattcacagcatattcatagagttgtgcagccatcactactctctcgctctggaacgtgtccaccagccctgaaatgaaatcccacacccat---tagcagtca---cccccggccccctgctcctagtccctggcagtcacca------------------------------------------------------------------------------ctctgccttccgtctgtaaggatttacttgtgctgaacacttcatgtc--aatggcatcatagggtgtgtgac--ttcatgactggcgtctttcattccacatcgtgacctcacggttgatccgtgttgctgcgtgtgtcagcgcttcgttcctgtctgtggctgagtcacattccat-gtatggacagaccacactgtgtttactcacccgtcacctgatgggcatttgggttgtttc-gctt-ttttgctattaaggc--aatgctcctgtgaacacttgtgtgcaggtttttgtgtgaatgtgtgtttttaattctctt-ggaggtgcatctaggaagggaactgctggatcata-ggtaattcaatgtctaac-ttttgaggaactgtcaaactg-tttccaaagtgactacagtctatttcaAGCCCTAAATCATTGA-ttttttaaaaacgctttttgttatgga-------aaacatatacaaaagagaatagtgccatgatcgtctgcgcacctctcacctggcaatgatcagctctggatttgtttatataatccagacagttccccgtcaacccagattatgctgaaaatttgcttcctattcagatcac-ttatctgtaagtatgttagtttgtatctctaaaacagaggtcagcaaactttttctggaaagggtcgga-------------ttttaggctttgaaggctaagtgatttctgccacaactactcatttctgcag-----------------------------------ttgtagcac-aaagcagccattggacaat------atggaagtgcatggccatggctgtgttccaataaaattttattagcaaaaacaggcagtagactggatttggcccctggcttgtggtttgcccatccctgctataaaatagaaggattctatttaaaaatgtagacataaggccattatcatacctccaaattaataattcctgaacatcatcacatacctagttttcaaatgttccc-attgtcttatatgtcatatttgacattagcttaaatcaggacctca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128263106 1305 + 137757926 ggatgacgaggtatgagccatcatgcccagcTCCGAATGGCATTCTTAAGTGTGGCGATTCATGTTACAAGAAGAATGTTTAAAGCATTGAAttttaagatagcagc-tttattgagatacaatttacataccataaa-ttcgcccttt-aaaaatgtacagtt---tggtgattcacagcatattcatagagttgtgcagccatcactactctctcgctctggaacgtgtccaccagccctgaaatgaaatcccacacccat---tagcagtca---cccccggccccctgctcctagtccctggcagtcacca------------------------------------------------------------------------------ctctgccttccgtctgtaaggatttacttgtgctgaacacttcatgtc--aatggcatcatagggtgtgtgac--ttcatgactggcgtctttcattccacatcgtgacctcacggttgatccgtgttgctgcgtgtgtcagcgcttcgttcctgtctgtggctgagtcacattccat-gtatggacagaccacactgtgtttactcacccgtcacctgatgggcatttgggttgtttc-gctt-ttttgctattaaggc--aatgctcctgtgaacacttgtgtgcaggtttttgtgtgaatgtgtgtttttaattctctt-ggaggtgcatctaggaagggaactgctggatcata-ggtaattcaatgtctaac-ttttgaggaactgtcaaactg-tttccaaagtgactacagtctatttcaACCCCTAAATCATTGA-ttttttaaaaacgctttttgttatgga-------aaacatatacaaaagagaatagtgccatgatcgtctgcgcacctctcacctggcaatgatcagctctggatttgtttatataatccagacagttccccgtcaacccagattatgctgaaaatttgcttcctattcagatcac-ttatctgtaagtatgttagtttgtatctctaaaacagaggtcagcaaactttttctggaaagggtcgga-------------ttttaggctttgaaggctaagtgatttctgccacaactactcatttctgcag-----------------------------------ttgtagcac-aaagcagccattggacaat------atggaagtgaatggccatggctgtgttccaataaaattttattagcaaaaacaggcagtagactggatttggcccctggcttgtggtttgcccatccctgctataaaatagaaggattctatttaaaaatgtagacataaggccattatcatacctccaaattaataattcctgaacatcatcacatacctagttttcaaatgttccc-attgtcttatatgtcatatttgacattagcttaaatcaggacctca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10661773 1305 - 16319837 ggatgacgaggtgtgagccatcatgcccagcTCCGAATGGCATTCTTAAGTGTGGCGATTCATGTTACAAGAAGAATGTTTAAAGCATTGAAttttaagatagcagc-tttattgagatacaatttacataccataaa-ttcgcccttt-aaaaatgtacagtt---tggtgattcacagcatattcatagagttgtgcagccatcactactctctcgctctggaacgtgtccaccagccctgaaatgaaatcccacacccat---tagcagtca---cccccggccccctgctcctagtccctggcagtcacca------------------------------------------------------------------------------ctctgccttccgtctgtaagggtttacttgtgctgaacacttcgtgtc--aatggcatcatagggtgtgtgac--ttcatgactggcgtcttgcattccacatcgtgacctcacggttgatccgtgttgctgcgtgtgtcagcgcttcgttcctgtctgtggctgagtcacattccat-gtatggacagaccacactgtgtttactcacccgtcacctgatgggcatttgggttgtttc-gctt-ttttgctattaaggc--aatgctcctgtgaacacttgtgtgcaggtttttgtgtgaatgtgtgtttttaattctctt-ggaggtgcatctaggaagggaactgctggatcata-ggtaattcaatgtctaac-ttttgaggaactgtcaaactg-tttccaaagtgactacagtctatttcaACCCCTAAATCATTGA-ttttttaaaaacgctttttgttatgga-------aaacatatacaaaagagaatagtgccatgatcgtctgcgcacctctcacctggcaatgatcagctctggatttgtttatataatccagacagttccccgtcaacccagattatgctgaaaatttgcttcctattcagatcac-ttatctgtaagtatgttagtttgtatctctaaaacagaggtcagcaaactttttctggaaagggtcgga-------------ttttaggctttgaaggctaagtgatttctgccacaactactcatttctgcag-----------------------------------ttgtagcac-aaagcagccattggacaat------atggaagtgaatggccctggctgtgttccaataaaattttattagcaaaaacaggcagtagactggatttggcccctggcttgtggtttgcccatccctgctataaaatagaaggattctatttaaaaatgtagacataaggccattatcatacccccaaattaataattcctgaacatcatcacatacctagttttcaaatgttccc-attgtcttatatgtcatatttgacattagcttaaatcaggacctca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12285416 1305 + 20526591 ggatgacgaggtatgagccatcatgcccagcTCCGAATGGCATTCTTAAGTGTGGCGATTCATGTTACAAGAAGAATGTTTAAAGCATTGAAttttaagatagcacc-tttattgagatacaatttacataccataaa-ttcgcccttt-aaaaatgtacagtt---tggtgattcacagcatattcatagagttgtgcagccatcactactctctcgctctggaacgtgtccaccagccccgaaatgaaatcccacacccat---tagcagtca---cccccggccccccgctcctagtccctggcagtcacca------------------------------------------------------------------------------ctctgccttccgtctgtaagggtttacttgtgctgcacacttcatgtc--catggcatcatagggtgtgtgac--ttcatggctggcgtctttcattccacatcgtgacctcacggttgatccgggttgctgtgtgtgtcagcgcttcgttcctgtctgtggctgagtcacattccat-gtatggacagaccgcactgtgtttactcacccgtcacctgatgggcatttgggttgtttc-gctt-ttttgctattaaggc--aatgctcctgtgaacctttgtgtgcaggtttttgtgtgaatgtgtgtttttaattctctt-ggaggtgcatctaggaagggaactgctggatcata-ggtaattcaatgtgtaac-ttttgaggaactgccaaactg-tttccaaagtgactacagtctatttcaACCCCTAAATCATTGA-ttttttaacaacactttttgttatgga-------aaacatatacaaaagagaatagtgtcatgatcgtctgcgcacctctcacctggcaatgatcagctctggatttgtttatataatccagacggttccccgtcaacccagattatgttgaaaatttgcttcctattcagatcac-ttatctgtaagtatgttagtttgtatctctaaaacagaggtcagcaaactttttctggaaagggtcgga-------------ttttaggctttgaaggctaagtgatttctgccacaactactcatttctgcag-----------------------------------ttgtagcac-aaagcagccattggacaat------atggaagtgaatggccatggctgtgttccaataaaattttattagcaaaaacaggcagcaggctggatttggcccctggcttgtggtttgcccatccctgctataaaatagaaggattctatttaaaaaggtagacataaggccattatcatacccccaaattaataattcctgaacatcatcacatacctagttttcaaatgttccc-attgtcttatatgtcatatttcacattagcttaaatcaggacctca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119257343 1306 + 128539186 ggattacgaggtatgagccatcatgcccagcTCCGAATGGCATTCTTAAGTGTGGCGATTCATGTTACAAGAAGAACGTTTAAAGCATTGAAttttaaggtagcagc-tttattgagatacaatttacataccataaa-tttgcccttt-aaaaatgtgcagtt---tggtgattcacagcatattcatggagttgtgcagccatcactactctctcgctctggaacgtgtccaccagccctgaaatgaaatcccacacccat---tagcagtca---cccccggccccccgctcctagtccctggcagtcacca------------------------------------------------------------------------------ctctgccttccgtctgtaaggatttacttgtgctgaacacttcatgtc--aatggcatcatagggtgtgtgac--ttcatgactggcgtctttcattccacatcgtgacctcacggttgatccatgttgctgcgtgtgtcagcggttcgttcctgtctgtggctgagtcacattccat-gtatggacagaccacactgtgtttactcacctgtcaccttatgggcatttgggttgtttc-gctt-ttttgctattaaggc--aatgctcctgtgaacatttgtgtgcaggtttttgtgtgaatgtgtgtttttaattctctt-ggaggtgcatctaggaagggaactgctggatcata-ggtaattcaatgtctaac-ttttgaggaactgccaaactg-tttccaaagtgactacagtctatttcaACCCCTAAATCATTGA-ttttttaaaaacactttttgttatgga-------aaacatatacaaaagagaatagtgtcatgatcgtctgcgcacctctcacctggcaatgatcagctctggatttgtttatataatccagacagttccccatcaacccagattatgttgaaaatttgcttcctattcagatcac-ttatctgtaagtatgttagtttgtatctgtaaaacaggggtcagcaaactttttctggaaagggtcgga-------------ttttaggctttgaaggctaagtgatttctgccacaactactcatttctacag-----------------------------------ttgtagcacaaaagcagccattggacaat------atggaagtgaatggccatggctgtgttccaataaaattttattagccaaaacaggcagcaggctggatttggcccctggcttgtggtttgcccatccctgctataaaatagaaggattctatttaaaaatgtagacataaggccattatcatacccccaaattaataattcctgaacatcatcacatacctagttttcaaatgttccc-attgtcttatatgtcatatttcacattagcttaaatcaggacctca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 599419 1304 + 6255621 ggatgacgaggtatgagccatcatgcccagcTCCGAATGGCATTCTTAAGTGTGGCGATTCATGTTACAAGAAGAATGTTTAAAGCACTGAAttttaagatagcagc-tttattgagatacaatttacataccataaa-ttcgcccttt-aaaaatgtacagtt---tggtgattcacagcatattcatagagttgtgcagccatcactactctctcactctggaacgtgtccaccagccccgaaatgaaatcccacacccat---tagcagtca---cccccgg-cccctgctcttagtccctggcagtcacca------------------------------------------------------------------------------ctctgccttccggctgtaagggtttacttgtgctgaacacttcatgtc--catggcatcatagggtgtgtgac--ttcatggctggcgtctttcattccacatcgtgacctcacggttgatccgggttgctgcgtgtgtcagcgcttcgttcctgtctgtggctgagtcacattccgt-gtatggacagaccgcactgtgtttactcacccgtcacctgatgggcatttgggttgtttc-gctt-ttttgctattaaggc--aatgctcctgtgaacatttgtgtgcaggtttttgtgtgaatgtgtgtttttaattctctt-ggaggtgcatctaggaaggcaactgctggatcata-ggtaattcaatgtgtaac-ttttgaggaactgccaaactg-tttccaaagtgactacagtctatttcaACCCCTAAATCATTGA-ttttttaaaaacactttttgttatgga-------aaacatatacaaaagagaatagtgtcatgatcgtctgcgcacctctcacctggcaatgatcagctctggatttgtttatataatccagacggttccctgtcaacccagattatgttgaaaatttgcttcctattcagatcac-ttatctgtaagtatgttagtttgtatctctaaaacagaggtcagcaaactttttctggaaagggtcgga-------------ttttaggctttgaaggctaagtgatttctgccacaactactcatttctgcag-----------------------------------ttgtagcac-aaagcagccattggacaat------atggaagtgaatggccatggctgtgttccaataaaattttattagcaaaaacaggcagcaggctggatttggcccctggcttgtggtttgcccatccctgctgtaaaatagaaggattctatttaaaaaggtagacataaggccattatcatacccccaaattaataattcctgaacatcatcacatacctagttttcaaatgttccc-attgtcttatatgtcatatttcacattagcttaaatcaggacctca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4634999 1294 - 8658521 ggattacgaggtatgaaccatcatgcccagcTCTGAATGGCATTCTTAAGTGTGGCGATTCATGTTAAAAGAAGAATGTTTAAAGCACTGAAttttaagatagcagc-tttattgagatacaatttacataccataaa-ttcgcccttt-aaaaatgtacagtt---tggtgattcacagcatattcatagagttgtgcagccatcaatactctctcgctctggaacgtgtccaccagccctgaaatgaaatcccacacccat---tagcagtca---ccccctgccccccgctcctagtccctggcagtcacca------------------------------------------------------------------------------ctctgccttccatctgtaaggatttacttgtgctgaacacttcatgtc--aatggcatcatagggtgtgtgac--ttcatgactggtgtctttcattccacatcgtgacctcacggttgatccgtgttgctgcgtgtgtcagcacttcgttcctgtgtgtggctgagtcacattccat-gtatggacagactacactgtgtttactcacccgtcacctgatgggcatttgggttgtttt-gctt-ttttgctattaaggc--aatgctcc----------tgtgtgcagg-ttttgtgtgaatgtgtgtttttaattctctt-gggggtgcatctaggaagggaactgctgggtcata-ggtaattcaatgtctaac-ttttgaggaactgccaaacta-tttccaaagtgactacagtcagtttcgactcctaAATCATTGA-ttttttaaaagcactttttgttatgga-------aaacatataaaaaagagaacagtgtcatgatcgtctgcgcacctctcacctggcaatgatcagctctggctttgtttatataatccacacggttccctgtcaacccagattatgttgaaaatttgcttcctattcagatcac-ttatctgtaagtatgttagtttgtatctctaaaacagaggtcagcaaactttttctggaaagggtcgga-------------ttttaggctttgaaggctaagtgatttctgccacaactactcatttctgcaa-----------------------------------ttgtagcac-aaagcagccattggacaat------atggaagtgaatggccatggctgtgttccaataaaactttattagcaaaaacaggcagcaggctggattcggcccctggcttgtgttttgcccatccctgctataaaatagaaggattctatttcaaaacgtagacataaggccattatcatacccccaaattaataattcctgaacatcatcatatacctagttttcaaatgttccc-attgtcttatatgtcatatttcacattagtttaaatcaggacctca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114838594 1266 + 124281992 ggattacgaggtgtgagccatcatgctcagcTCCGAATGGCATTCTTAAGCGTGACGATTCATGCTACAGGAGGAATGTTTAAAGCACAGAATTTTAAGttagcagcttttgttgagatacaatttacgtgccataaa-ttgaccattt-aaaaatgtacaatt---ccgtgattcatagcacattcacagagttgtggggccaccaccactctc--gcgccggaacatttcc-ccagccccgaaatgaaatcccattctcat---tagcagtcc---ctccctgtcccccgctcctggtccctggcagccacca------------------------------------------------------------------------------ctctgtgttccgtctgtatggatttactcgttctgggcactgtgtgtc--aatggaaccatacggtatgtgacttttcatgactggcttctttcactctgcatcc-----------------------------tgggtca--------ttactttctatggctgactcaccttccac-gaacggacagaccaccctgtgcttacccacctgccacttgatgggcatttgggttgtttc-gctt-ttttgctattaagac--agtgctgctgtgaacatatctgtacaggtttttgtgtgaatgtgtggttttaattctttt-aggggtatatctaggaagggaattgctgggtcataggataattctaggtttaag-ttttgaggaactgccaaactgttttccgaagtaactatagtatatttcaaccccTACATGATTGa-ttttttaaaaaaaaattttattatGGA-------AAACACATAC--AAGAGAATATTG---TGATCCTCTTCACAGCCTTCGCCTGGCAGTGACCAGCTCTGGATTTGTTTGTATG--TAACAGGGTTTCCCATCAACACAGATTATGTTGAAAATTTGCTTCATATtcagatcac-ttatctgtaaggatgttagtttgtgtctctaaaacagaggtcagcaaac--ttcctgtaa-gggtcagatagtagg----tattttaggctttgaaagctcggtgatttctgccacaactagtcacttctgcca-----------------------------------ttgtagcacaaaagcaaccattggacatt------atggaagtgaatggtcatggctgtgttccaataaaactttattagcaaaaacaggcag-aggctggctttggcccctggcttgtggtttgcccatccctgctataacatagaaggattctatctcaaaacacagacataaagccattatcacaccc-caaattaataattccttaatatcatcatatacctagttttcaaatattcccaattatc---tatgtcatagttcacatttgtttaaatgaggaccTCA i calJac3.chr9 C 0 I 1847 s saiBol1.JH378194 481321 1301 - 9212255 ggattacgaggtgtgagccatcatgcttagcTCCGAATGGCATTCTCAAGTGTGATGATTCATGTTACAGGAGGAATGTTTAAAGCACCGAAttttaagttagcagc-tttgttgagatacaatttacatgccataaa-tcgaccattt-aaaaatgtacaatt---ccgtgattcatagcatattcatagagttgtacagccaccactactctc--gctctggaacatttcc-ccaaccccacaatgaaatcccatactcat---tagcagtcc---ctccttgttccccgcttctggtccctggcagccacca------------------------------------------------------------------------------ctctgtgttccgtctgtgtggatttactcgttctgggcactgcatgtc--actggaatcatacggtatgtgacttttcctgactgggtgctttcactccgcatcatgacttgtaggctcatccgtgctgctgcgtgggtca--------ttactttctatggctgactcaccttccgt-gtacggacagaccaccctgtgcttacccacccatcacttgatgggcatttgggttgtttc-gctt-ttttgctattaagac--aatgctgctgtgaacatgcttgtacaggtttttgtgtgaatgtgtggttttaattcttct-ggggatatatctaggaagggaattgctgggtcatagggtaattctaggtttaag-ttttgaggagctgccaaactgttttccgacgtgactatggtatatttcaaccCCTACATGATTGA-ttttttttaaaaaaattttattatgga-------aaacatatacaaaagagaatattgtcatgatcctcttcacacccttcacccggcagtgatcagctctggatttgtttatatg--taacagggtttcccatccacacagattatgttgaaaatttgcttcatattcacatcac-ttatctgtaagtatgttagtttgtgtctctgaaacagaggtcagcaaac--tttctgtaaggggtcagattgtagg----cattttaggctttgaaagctgagtaatttctgccacaactactcacttctgcca-----------------------------------ttgtagcacaaaagcaaccattggacaat------atggaagtgaatggccatgactgtgttccaataaaactttagtagcaaaaacaggcgg-aggctggctttggcccctggcttgtggtttgcccatcccttctctaacatagaaggattctatctcaaaacatagacataaagccattatcacaccctcaaattaataattccctaatatcatcatatacctagttttcaaatgttcccaattgtc---tatgtcatagttcacatttgtttaaatgaggatcTCA i saiBol1.JH378194 C 0 I 1626 s cebCap1.NW_016107484v1 2900167 1300 + 4466143 gggttacgaggtgtgagccatcttgctcagcTCTGGATGGCATTCTTAAGTGTGACGATTCATGTTACAGGAAGAATGTTTAAAGCACCAAAttttaagttagcagc-tttgttgagatacaatttacatgccataaa-ttgaccattt-aaaaatgtgcaatt---ccatgattcatggcatattcatagagctgtacagccaacactactctc--gctctggaacatttcc-ccagccccaaaatgaaatcccatactcat---tagcagtcc---ttccctgtccccggctcctggtccctggcagccacca------------------------------------------------------------------------------ctctgtgttccgtctgtgtggatttactcgttctgggcactgcatgtc--aatggagtcatacggtatgtgacttttcatgactggctgctttcactccgcatcatgacttcaaggctcatccgtgttgctgcatgggtca--------ttactttctatggctgactcatctcccac-gtatagacagagcactctgtgtttacccacccatcacttgatgggcatttgggttgtttc-gctt-ttttgctgttaagac--aatgctgctgtgaacatattcgcacaggtttttgtgtgaatgtgtggttttaattctttt-gggggcatatctaggaagggaattgctgggtcatagaa-aatcctaggtttaag-ttttgaggaactgccaaactgttttccgaagtgactacagtatatttcaaccccTACATGATTGA-tttttttaaaaaaatttttattatgga-------aaacatatacagaagagaatattgttgtgatcctcttcacacccttcacctggcaacggtcagctctgggtttgtttatatg--taacagggttttccatcaacacagattatgttgaaaatttgcttcatattcaaatcac-ttatctgtaagtatgttagtttgtatctctaaaacacaggtcagcaaac--tttctgtaaagggtcagatagtagg----tattttaggctttgaaagctaagtgatttctgccacaactactcacttctgcca-----------------------------------tcgtagcacaaaagcaaccattggacaat------atggaagtgaatggccatggctgtgttccagtaaaactttattagcaaaaacaggcag-aggctggctttggcccctggcttgtggtttgcccatccctgctctgacatagaaggattctatctcaaaacatagacatgaagccattatcatacccccaaattaattatttcttaatatcatcatatacctagttttcaaatgttcccatttgtc---tatgtcatagttcacatttgtttaaatgaggaccTCA i cebCap1.NW_016107484v1 C 0 I 1635 s aotNan1.NW_018491581v1 1603122 1301 + 5364348 ggattatgaggtgtgagccatcatgcccagcTCCGAATGGCATTCTTAAGTGTGACGATTCGCGTTACAGGAGGAATGTTTAAAGCACCGAAttttaagttagcagc-tttgttgagatacaatttacatgccataaa-tacgccgttt-aaaaacgtacaatt---ccgtgattcatagcatattcatagagttgtacagccaccactactctc--gctctggaacatttcc-ccagccccgaagtgaaatcccatactcat---tagcagccc---ctccctgtccccggctcctggtccctggcagccagca------------------------------------------------------------------------------ctctgtgttccgtctgtatggatttactcgttctggctactgcatgtc--aatggaatcatatggtatgtgacttttcatgactggctgctttcactccgcatcatgacttcaaggctcatccgtgttgctgcatgggtca--------ttactttctatggctgactcacgttccac-gtgtggacagaccaccctgtgcttacccacccgtcacttgatgggcattcgggttgtttt-cctt-ttttgctattaagac--aattctgctgtgaacatatttgtacaggtttttgtgtgaacgtgtggttttaattcttttggggggtgtatctaggaagggaattgctgggtcatagggtaattctaggtttaag-ttttgaggaactgccaaactgttttccgaagtgactatagtatatttcaaccccTACATGATTGA-tttttttaaaaaaatttttattatgga-------aaacatatacaaaagagaatattgttgtgatcctcttcacacccttcacccggcggtgatcagctttggatttgtttatatg--taacagggtttcccatcaacatagattatgttgaaaatttgcttcatattcaaatcac-ttatctgtaagtacgttagttcgtttctctaaaacagaggtcagcaaac--tttatgtaaaggatcagatagtagg----tattttaggctttgaaagctaagtgatttctgccacagcgactcacttctgcca-----------------------------------ctgtagcacagaagcaaccattggacaat------atggacgtgaatggccacggctgtgttccaataaaactttattagcaaaagcaggcag-aggctggctttgggccctggcttgtggtttgcccatccctgctataacatagaaggattctgtctcaaaacataggcataaagccattatcataccc-caaattaataattccttaatatcatcatatacctagttttcaaatgttcccaattgtc---tatgtcatagttcacatttgtttaaatgaggaccTCA i aotNan1.NW_018491581v1 C 0 I 1612 s dasNov3.JH568189 861919 1210 - 1116856 GGGTTACGAGAGG----------------ACTTCATAAAGCATT-----------------------------------------GACTAAATTGGaaaaaaaaatt-tttattgagatacaatttacacaccatacatttcacccttt-caaaatgtgccgtt----------------------cacataactgtgcagccatcaccactgtctgattccaaaacattttcatcagcccagaaagaaa--cccaggcttgtcgacaacagtcaattcccatttctccctccccacagcccctggcaaccactg------------------------------------------------------------------------------atctgctttttgtttccatagatttgccttttttggacatttcatgtatgtatcccatttcacaatatgtatcctattgtgtctggcattttccacttaacataatattttcagggttcgcccatgttgtaacatgtatcagaacttc-cttctttttatggccaaataatatcccattgtatggataggccacattttattgatccattcatccactgatagacattt--gttgtttctactt-tttgactattaagattaactgctgctatgaacatttgtgtataggtttttgtgtggacacg---tttcatttctctt-gagtagatacctaagagtggaattgctgagtcatgtagtatatctatgtttagctttttgaagacctgccaaactattttccaaagtggctgcaccattttacaatcccTAAGGAACAGA-TATTTAAAAA-----CTGtattctggaaaatttcaaatatacacaaaagagaatagtagaaggcgcctttgtacatccatcacccagcatttatccactgtggactcaCTTATATAG-TAACA-----------CAGCCCATACTAT-TTTAAAAGCTGCTTTGTATCTGTATCACATCATTTGTAAAGATTTTAGTTTGGCTCTTTAAAAT--gggtcagcaaacttgttctatacagggacagagagtcctgtcctattttagactttgagggttatgtgatgtctgctg------------------------------------------------------tcacattgcaaaagcagtca-cagacaat------gtgtaagtgaatgggcattgctgcgcaccagcaaaac--tattcacagaggcaggctgcaggctagatttggtcacgaggttgtagtttg-tcacccctgC-------TAGaaaga-tctttttctaaacatattcaaaatgccattaccatacctaaaaatcaataatttcttaatatcatcatatagctcatgttcaaatgttcccaatagacttataaattatttttc-catttctttaaatcaggacccca i dasNov3.JH568189 I 17 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I a score=16855.000000 s hg38.chr12_KI270834v1_alt 94253 5 + 119498 ttaa-g s panTro5.chr12 127379880 5 + 137163284 ttaa-g i panTro5.chr12 C 0 C 0 s panPan2.chr12 125730187 5 + 135337776 ttaa-g i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8243739 5 - 8369578 ttaa-g i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97902149 5 + 106955855 ttaa-g i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124016318 6 + 133663169 ttaagg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128264411 6 + 137757926 ttaagg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10663078 6 - 16319837 ttaagg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12286721 6 + 20526591 ttaagg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119258649 6 + 128539186 ttaagg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 600723 6 + 6255621 ttaagg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4636293 6 - 8658521 ttaagg i colAng1.NW_012116043v1 C 0 C 0 s dasNov3.JH568189 863129 5 - 1116856 -aaaag i dasNov3.JH568189 C 0 I 1911 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I e aotNan1.NW_018491581v1 1604423 1612 + 5364348 I e cebCap1.NW_016107484v1 2901467 1635 + 4466143 I e saiBol1.JH378194 482622 1626 - 9212255 I e calJac3.chr9 114839860 1847 + 124281992 I a score=482406.000000 s hg38.chr12_KI270834v1_alt 94258 83 + 119498 gtctatacattataattggttgtgtcacttaatttctctcttttcccccttgcatttatttttatttttgtttgtttattttt s panTro5.chr12 127379885 83 + 137163284 gtctatacattataattggttgtgtcacttaatttctctcttttcccccttgcatttatttttatttttgtttgtttattttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125730192 83 + 135337776 gtctatacattataattggttgtgtcacttaatttctctcttttcccccttgcatttatttttatttttgtttgtttattttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8243744 83 - 8369578 gtctatacattataattggttgtgtcacttaatttctctcttttcccccttgcatttatttttatttttgtttgtttattttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97902154 83 + 106955855 gtctatacattataattggttgtgtcacttaatttctctcttttccaccttgcatgtatttttatttttgtttatttattttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124016324 83 + 133663169 gtctatacgttataattggttgtgtcacttaatttctctcttttccctgttgcatttatttttatttttatttatttattttt i rheMac8.chr11 C 0 I 1347 s macFas5.chr11 128264417 83 + 137757926 gtctatacgttataattggttgtgtcacttaatttctctcttttccccgttgcatttatttttatttttatttatttattttt i macFas5.chr11 C 0 I 16 s macNem1.NW_012010578v1 10663084 83 - 16319837 gtctatacgttataattggttgtgtcacttaatttctctcttttccccgttgcatttatttttatttttatttatttattttt i macNem1.NW_012010578v1 C 0 I 1356 s cerAty1.NW_012001186v1 12286727 83 + 20526591 gtccatacgttataattggttgtgtcacttaatttctctcttttccccgttgcatttatttttatttttatttatttattttt i cerAty1.NW_012001186v1 C 0 I 1754 s chlSab2.chr11 119258655 83 + 128539186 gtctatacgttataattggttgtgtcacttaatttctctcttttccccgttgcatttatttttatttttatttatttattttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 600729 83 + 6255621 gtctatacgttataattggttgtgtcacttaatttctctcttttccccgttgcatttatttttatttttatttatttattttt i manLeu1.NW_012103587v1 C 0 I 10419 s colAng1.NW_012116043v1 4636299 83 - 8658521 gtctatacgttataattggttgtgtcacttaatttctctcttttccccgttgcatttatttttatttttatttatttattttt i colAng1.NW_012116043v1 C 0 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I e aotNan1.NW_018491581v1 1604423 1612 + 5364348 I e cebCap1.NW_016107484v1 2901467 1635 + 4466143 I e saiBol1.JH378194 482622 1626 - 9212255 I e calJac3.chr9 114839860 1847 + 124281992 I a score=632314.000000 s hg38.chr12_KI270834v1_alt 94341 283 + 119498 ggagacagggtctggctctgatgcccaggctagggtgcaatggcacaatcacagcttactgcaacctccacctcccaggctcaagtgatcctctcacttcagcctcctcagtagctgggactacaggtgcatgccaccatgcctggctaat---tttta--aaaaaaatttgtagagatggtggtctcgccatgttgcccaggctgatcttgaactcctgggcttaagggatcctcctgcctcggcctcccaaagtgctgggattagaagcataagccaccgtgtctg s panTro5.chr12 127379968 283 + 137163284 ggagacagggtctggctctgatgcccaggctagggtgcagtggcacaatcacagcttactgcaacctccacctcccaggctcaagtgatcctctcacttcagcctcctcagtagctgggactacaggtgcatgccaccatgcctggctaat---ttttt--aaaaaaatttgtagagatggtggtctcgccatgttgcccaggctgatcttgaactcctgggcttaagggatcctcctgccttggcctcccaaagtgctgggattagaagcataagccaccgtgtctg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125730275 283 + 135337776 ggagacagggtctggctctgatgcccaggctagggtgcagtggcacaatcacagcttactgcaacctccacctcccaggctcaagtgatcctctcacttcagcctcctcagtagctgggactacaggtgcatgccaccatgcctggctaat---tttta--aaaaaaatttgtagagatggtggtctcgccatgttgcccaggctgatcttgaactcctgggcttaagggatcctcctgcctcggcctcccaaagtgctgggattagaagcataagccaccgtgtctg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8243827 283 - 8369578 ggagacagggtctggctctgatgcccaggctagggtgcagtggcacaatcacagcttactgtaacctccacctcccaggctcaagtgatcctctcacttcagcctcctcagtagctgggactacaggtgcatgccaccatgcctggctaat---tttta--aaaaaaatttgtagagatggtggtctcgccatgttgcccaggctgatcttgaactcctgggcttaagggatcctcctgcctcggcctcccaaagtgctgggattagaagcataagccaccgtgtctg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97902237 283 + 106955855 ggagacagggtctggctctgatgcccaggctagagtgcagtggcacaatcacagcttactgcaacctccacctcccaggctcaagtgatcctcccacttcagcctcctcagtagctgggactacaggtgcatgccaccatgcctggctaat---tttta--aaaaaattttgtagagatggtggtctcgccatgttgcccaggctgatcttgaactcctgggcttaagggatcctcctgcctcagcctcccaaagtgctggaattagaagcataagccaccgtgtctg i nomLeu3.chr10 C 0 C 0 s macFas5.chr11 128264516 280 + 137757926 tgagatggagtctcgctctgtcgcccaggctggagtgcagtggccggatctcagctcactgcaagctccgcctcccgggtttacgccattctcctgcctcagcctccggagtagctggcactacaggcgtccgccacctcacccggctagt---ttttt--gtattttttagtagagacgg-ggtttcaccgtgttagccaggatggtctcgatctcctgacctc--gtgatccgcccgtctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccg i macFas5.chr11 I 16 I 1033 s chlSab2.chr11 119258738 285 + 128539186 agagacagggtctggctctgatgcccaggctggagtgcagtgacacaatcacagcctactgcaacctccacctcccaggctcaagtgatcctcccacttcagcctcctcagtagctgggactacaggtgcatgccaccatgcccagataat---tttttaaaaaattttttgtagagatggtggtctcgccatgttgcccaggctggtcttgaactcctgggcttaagggatcctcctgcctcagcctcccaaagtgctgggactagaagcataagccaccgtgtctg i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4636382 286 - 8658521 ggagacagggtctggctctgatgcccaggttggagtgcagtgacacaatcacagcttactgcaacctccacctcccaggctcaagtgatcctcccacttcagcctcctcggtagctgggactacaggtgcatgccaccatgcccagataatttgttttt--ttaattttttgtagagatggtggtctcgccatgttgcccaggctggtcttgaactcctgggcctaagggatcctcctgcctcagcctcccaaagtgctgggactagaagcataagccaccgtgtctg i colAng1.NW_012116043v1 C 0 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I e aotNan1.NW_018491581v1 1604423 1612 + 5364348 I e cebCap1.NW_016107484v1 2901467 1635 + 4466143 I e saiBol1.JH378194 482622 1626 - 9212255 I e calJac3.chr9 114839860 1847 + 124281992 I e manLeu1.NW_012103587v1 600812 10419 + 6255621 I e cerAty1.NW_012001186v1 12286810 1754 + 20526591 I e macNem1.NW_012010578v1 10663167 1356 - 16319837 I e rheMac8.chr11 124016407 1347 + 133663169 I a score=1307775.000000 s hg38.chr12_KI270834v1_alt 94624 716 + 119498 ccccaccccttgcatttatctgtggaagaaacctacctgattgctgggttgtttcccgtcgtctgaattttgt-gctcgcctctctgtagtgtGTCATTGgaggaactctcaaatgccaatacatgtagttcttttctcatgagactttaggattccccagtgaagagtcttcagccttttcctagagtatgtaatcctggctgccagccttcgtggaaccaagtgagaaaagaaggctgtcgatttcagcattcgtcgtgaaaacgttcactgaaagccatattttcagtacggtttaccctcaactatgcctggtgttcccccgtccagagaccctgctttatcttttccaaagttcacttgggtggggcaggcagttgcctggcagcatggagtgagaggggatctgggatctgacggcttgtcaaacaagctgtccacccatcttcctgtttttagcccatattcacccacacttccaaaggatctggtactgccagttcctgagcttttgatgtgttctgtggtttgcatctcagctttatctcctcctcatgtgagagtcaactttctcagctctgctaaatcagttatcacttgtccatctgtctgtagcttgcagtttttttttttttt------------------tttttttttttttttgagacagaatgtcactctgttgcccaggctggagtgcagtggtgcgatcttagctcactgcaacc s panTro5.chr12 127380251 714 + 137163284 ccccaccccttgcatttatctgtggaagaaacctacctggttgctgggttgtttcccgtcgtctgaattttgc-gctcgcctctctgtagtgtGTCATTGgaggaactctcaaatgccaatacatgtagttcttttctcatgagactttaggattccccagtgaagagtcttcagccttttcctagagtatgtaatcctggctgccagccttcgtggaaccaagtgagaaaagaaggctgtcgatttcagcattcatcgtgaaaacgttcactgaaagccatattttcagtacggtttaccctcaactatgcctggtgttcccctgtccagagaccctgctttatcttttccaaagttcacttgggtggggcaggcagttgcctggcagcatggagtgagaggggatctgggatctgacggcttgtcaaacaagctgtccacccatcttcctgtttttagcccatattcacccacacttccaaaggatctggtactgccagttcctgagcttttgatgcgttctgtggtttgcatctcagctttatctcctcctcatgtgagagtcaactttctcagctctgctaaatcagttatcacttgtccatctgtctgtagcttgcag--tttttttttttt------------------gttgttttgttttttgagacagaatgtcactctgttgcccaggctggagtgcagtggtgcgatcttagctcactgcaacc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125730558 710 + 135337776 ccccaccccttgcatttatctgtggaagaaacctacctgattgctgggttgtttcccgtcgtctgaattttgc-gctcgcctctctgtagtgtGTCATTGgaggaactctcaaatgccaatacatgtagttcttttctcatgagactttaggattccccagtgaagagtcttcagccttttcctagagtatgtaatcctggctgccagccttcgtggaaccaagtgagaaaagaaggctgtcgatttcagcattcatcgtgaaaacgttcactgaaagccatattttcagtacggtttaccctcaactatgcctggtgttcccctgtccagagaccctgctttatcttttccaaagttcacttgggtggggcaggcagttgcctggcagcatggagtgagaggggatctgggatctgacggcttgtcaaacaagctgtccacccatcttcctgtttttagcccatattcacccacactttcaaaggatctggtactgccagttcctgagcttttgatgcgttctgtggtttgcatctcagctttatctcctcctcatgtgagagtcaactttctcagctctgctaaatcagttatcacttgtccatctgtctgtagcttgcag------tttttttt------------------tttgtttttttttttgagacagaatgtcactctgttgcccaggctggagtgcagtggtgcgatcttagctcactgcaacc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8244110 705 - 8369578 ccccaccccttgcatttatctgtggaagaaacctacctgattgctgggttgtttcccgtcatctgaattttgc-gctcgcttctctgtagtgtGTCATTGgaggaactctcaaatgccaatacatgtagttcttttctcatgagactttaggattccccagtgaagagtcttcagccttttcctagagtatgtaatcctggctgccagccttcgtggaaccaagtgagaaaagaaggctgtcgatttcagcattcatcgtgaaaacgttcactgaaagccatattttcagtacggtttaccctcaactatgcctggtgttcccctgtccagagaccctgctttatcttttccaaagttcacttgggtggggcaggcagttgcctggcagcatggagtgagaggggatctgggatctgatggcttgtcaaacaagctgtccacccatcttcctgtttttagcccatattcacccacacttccaaacgatctggtactgccagttcctgagcttttgatgcgttctgtggtttgcatctcagctttatctcctcctcatgtgagagtcaactttctcagctctgctaaatcagttatcacttgtccatctgtctgtagcttgcag-----------ttt------------------tttttttttttttttgagacagaatgtcactctgttgcccaggctggagtgcagtggtgcgatcttagctcactgcaacc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97902520 708 + 106955855 ccccaccccttgcatttatctgtggaagaaacgtgcctgattgctgggttgtttcccgtcgtctgaattttgcggctcgcctctctgtagtgtGTCAttggaggaactctcaaatgccaatacatgtagttcttttctcatgagactttacgatcccccagtgaagagtcttcagccttttcctcgagtatgtaatcctggctgccagccttcatggaaccaagtgagaaaagaagactgtcgatttcagcattcatcatgaaaacgttcaccgaaagccatattttcagtacggcttcccctcaactatgcctggtgttctcctgtccagagaccctgctttatcttttccaaagttcacgtgggtggggcgggcagttgcctggcagcatggagtgagaggggatctgggatctgacggcttgtcaaacaagctgtccacccatcttcctgtttttagcccacattcacccacacttccaaaggatctggtactgccagttcctgagcttttgatgcgttctgtggtttgcatctcagctttatctcctcctcatgtgagagtcaactttctcagctctgctaaatcagttatcacttgtccatctgtctgtagcttgcaG--------tttttt------------------tttttgtttttttttgagacagaatgtca-tctgttgcccaggctggagtgcagtggtacgatcttagcttactgcaacc i nomLeu3.chr10 C 0 C 0 s chlSab2.chr11 119259023 730 + 128539186 ccccaccccttgcatttatctgtggaagaaacttgcctgattgctgggttgtttcccgtcgtctgaattttgcggctcgcctctctgtgttgtgtcattggaggaactctcaaatgccaatacatgtagttcttttctcatgagaccttaagactccccagtgaagagtcttcagccttttcctagagtatgtaatcctggctgccagcctttgtggaagcatgtgagaaaagaaggctgtcaatttcagcattcatcatgaaaacttgcgctgaaaaccaccttttcagtatggtttcccctcaactatgcctggtgttcccctgtccagagaccctgctttatcttttccaaagttcacttgggtggggcaggcagttgcctggcagcatggagtgagcggggatctgggatctgactgcttgtcaaacaagctgtccacccatcttcctgtttttagcccatattcacccacacttccaaaggatctggaactgccagttcctgagcttttgatgcattctgtggtttgcatctcagctttatctcctcctcatgtaagagtcaactttctcagctctgctaaatcaattatcacttgtccatctgtctgtagcttgcag-----ttttttttttcttttttttcttttttctttttttttttttttaagacagaatgtcattctgttgtccaggctggagtgcaggggtgcgatcttagctcactgcaacc i chlSab2.chr11 C 0 I 12 s colAng1.NW_012116043v1 4636668 712 - 8658521 ccccaccccttgcatttatctgtggaagaaacttgcctgattgctgggttgtttcccgtcgtctgaattttgcggctcgcctctctgtgttgtgtcattggaggagctctcaaatgccaatacatgtagttcttttctcatgagaccttaagactccccagtgaagagtcttcagccttttcctagagtatggaatcctggctgcccgccttcgtggaagcatgtgaggaaagaaggctgtcactttcagcattcatcatgaaaacttgcactgaaaaccatcttctcagtatggtttcccctcaactatgcctggtgttcccctgtccagagaccctgctttatcttttccagagttcacttgggtggggcaggcagttgcctggcagcatggagtgagaggggatctgggatctgactgcttgtcaaacaagctgtccacccatcttcctgtttttagcccatattcacccacacctccaaaggatctggaactgccagttcctgagcttttgatgcattctgtggtttgcatctcagctttatctcctcctcatgtaagagtcaactttctcagctctgctaaatcaattatcacttgtccatctgtctgtagcttgcaG-----tttttttgt------------------ttttttggttttttttaggcagaatgtcactctgttgtccaggctggagtgccgtggtgcgatcttagctcactgcaacc i colAng1.NW_012116043v1 C 0 I 12 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I e aotNan1.NW_018491581v1 1604423 1612 + 5364348 I e cebCap1.NW_016107484v1 2901467 1635 + 4466143 I e saiBol1.JH378194 482622 1626 - 9212255 I e calJac3.chr9 114839860 1847 + 124281992 I e manLeu1.NW_012103587v1 600812 10419 + 6255621 I e cerAty1.NW_012001186v1 12286810 1754 + 20526591 I e macNem1.NW_012010578v1 10663167 1356 - 16319837 I e macFas5.chr11 128264796 1033 + 137757926 I e rheMac8.chr11 124016407 1347 + 133663169 I a score=62676.000000 s hg38.chr12_KI270834v1_alt 95340 69 + 119498 ttcgcctcctgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggcacctacc s panTro5.chr12 127380965 69 + 137163284 ttcgcctcctgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggcacctacc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125731268 69 + 135337776 ttcgcctcctgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggcacctgcc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8244815 69 - 8369578 ttcgcctcctgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggcacctacc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97903228 69 + 106955855 ttcacgtcctgggttcaagagaatctcctgcctcagcctcccaagtagctgggattacaggcacCTACC i nomLeu3.chr10 C 0 M 281 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I e aotNan1.NW_018491581v1 1604423 1612 + 5364348 I e cebCap1.NW_016107484v1 2901467 1635 + 4466143 I e saiBol1.JH378194 482622 1626 - 9212255 I e calJac3.chr9 114839860 1847 + 124281992 I e colAng1.NW_012116043v1 4637380 12 - 8658521 I e manLeu1.NW_012103587v1 600812 10419 + 6255621 I e chlSab2.chr11 119259753 12 + 128539186 I e cerAty1.NW_012001186v1 12286810 1754 + 20526591 I e macNem1.NW_012010578v1 10663167 1356 - 16319837 I e macFas5.chr11 128264796 1033 + 137757926 I e rheMac8.chr11 124016407 1347 + 133663169 I a score=74958.000000 s hg38.chr12_KI270834v1_alt 95409 133 + 119498 accacactcagctaatttttagtatttttagtagagacagggttttgccatgttggccaggctggtctcgaactcttgatctcaagtgatctgcccaccccggcctcccaaagtgctaggattacagatgtga s panTro5.chr12 127381034 133 + 137163284 accacactcagctaatttttagtatttttagtagagacagggttttgccatgttggccaggctggtctcgaactcttgatctcaagtgatctgcccaccccggcctcccaaagtgttaggattacagatgtga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125731337 133 + 135337776 accacactcagctaatttttagtatttttagtagagacagggttttgccattttggccaggctggtctcgaactcttgatctcaagtgatctgcccaccccggcctcccaaagtgttaggattacagatgtga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8244884 133 - 8369578 accacactcagctaatttttagtatttttagtagagacagggttttgccatgttggccaggctggtctcgaactcttgatctcaagtgatctgcccaccccggcctcccaaagtgttaggattacagatgtga i gorGor5.CYUI01015152v1 C 0 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I e aotNan1.NW_018491581v1 1604423 1612 + 5364348 I e cebCap1.NW_016107484v1 2901467 1635 + 4466143 I e saiBol1.JH378194 482622 1626 - 9212255 I e calJac3.chr9 114839860 1847 + 124281992 I e colAng1.NW_012116043v1 4637380 12 - 8658521 I e manLeu1.NW_012103587v1 600812 10419 + 6255621 I e chlSab2.chr11 119259753 12 + 128539186 I e cerAty1.NW_012001186v1 12286810 1754 + 20526591 I e macNem1.NW_012010578v1 10663167 1356 - 16319837 I e macFas5.chr11 128264796 1033 + 137757926 I e rheMac8.chr11 124016407 1347 + 133663169 I e nomLeu3.chr10 97903297 281 + 106955855 M a score=13540.000000 s hg38.chr12_KI270834v1_alt 95542 18 + 119498 gccaccacacctggccta s panTro5.chr12 127381167 18 + 137163284 gccaccacacctggccta i panTro5.chr12 C 0 C 0 s panPan2.chr12 125731470 18 + 135337776 gccaccacacctggccta i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245017 18 - 8369578 gccaccacacctggccta i gorGor5.CYUI01015152v1 C 0 C 0 s macFas5.chr11 128265829 18 + 137757926 gcaaccGCACCTGGAGTC i macFas5.chr11 I 1033 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I e aotNan1.NW_018491581v1 1604423 1612 + 5364348 I e cebCap1.NW_016107484v1 2901467 1635 + 4466143 I e saiBol1.JH378194 482622 1626 - 9212255 I e calJac3.chr9 114839860 1847 + 124281992 I e colAng1.NW_012116043v1 4637380 12 - 8658521 I e manLeu1.NW_012103587v1 600812 10419 + 6255621 I e chlSab2.chr11 119259753 12 + 128539186 I e cerAty1.NW_012001186v1 12286810 1754 + 20526591 I e macNem1.NW_012010578v1 10663167 1356 - 16319837 I e rheMac8.chr11 124016407 1347 + 133663169 I e nomLeu3.chr10 97903297 281 + 106955855 M a score=291478.000000 s hg38.chr12_KI270834v1_alt 95560 60 + 119498 gcttgcaaaattttattgctattgtcttttctccaattttctgggagcttatacc-ttttt s panTro5.chr12 127381185 60 + 137163284 gcttgcaaaattttattgctactctcttttctccaattttctgggagcttatacc-ttttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125731488 60 + 135337776 gcttgcaaaattttattgctactgtcttttctccaattttctgggagcttatacc-ttttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245035 60 - 8369578 gcttgcaaaattttattgctattgtcttttctccaattttctgggagcttatacc-ttttt i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124017754 60 + 133663169 gcttgcaaaattttattgctattgtcttttctccaattttctgggagcttatacc-ttttt i rheMac8.chr11 I 1347 C 0 s macFas5.chr11 128265847 60 + 137757926 gcttgcaaaattttattgctattgtcttttctccaattttctgggagcttatacc-ttttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10664523 59 - 16319837 gcttgcaaaatttta-tgctattgtcttttctccaattttctgggagcttatacc-ttttt i macNem1.NW_012010578v1 I 1356 C 0 s cerAty1.NW_012001186v1 12288564 61 + 20526591 gcttgcaaaattttattgctattgtcttttctccaattttctgggagcttatacctttttt i cerAty1.NW_012001186v1 I 1754 C 0 s chlSab2.chr11 119259765 60 + 128539186 gcttgcaaaattttattgctattgtcttatctccaattttctgggagcttatacc-ttttt i chlSab2.chr11 I 12 C 0 s manLeu1.NW_012103587v1 611231 60 + 6255621 GCTTGCAAAATTTTATTGCTATTGTCTTTTCTCCAATTTTCTGGGAGCTTATACC-TTTTT i manLeu1.NW_012103587v1 I 10419 C 0 s colAng1.NW_012116043v1 4637392 60 - 8658521 GCTTGCAAAATTTTATTGCTTTTGTCTTTTCTCCAATTTTCTGGGAGCTTATACC-TTTTT i colAng1.NW_012116043v1 I 12 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I e aotNan1.NW_018491581v1 1604423 1612 + 5364348 I e cebCap1.NW_016107484v1 2901467 1635 + 4466143 I e saiBol1.JH378194 482622 1626 - 9212255 I e calJac3.chr9 114839860 1847 + 124281992 I e nomLeu3.chr10 97903297 281 + 106955855 M a score=9488.000000 s hg38.chr12_KI270834v1_alt 95620 2 + 119498 aa s panTro5.chr12 127381245 2 + 137163284 aa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125731548 2 + 135337776 aa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245095 2 - 8369578 aa i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124017814 2 + 133663169 aa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128265907 2 + 137757926 aa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10664582 2 - 16319837 aa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12288625 2 + 20526591 ta i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119259825 2 + 128539186 aa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 611291 2 + 6255621 TA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4637452 2 - 8658521 AA i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 484248 2 - 9212255 AA i saiBol1.JH378194 I 1626 C 0 s aotNan1.NW_018491581v1 1606035 2 + 5364348 AA i aotNan1.NW_018491581v1 I 1612 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I e cebCap1.NW_016107484v1 2901467 1635 + 4466143 I e calJac3.chr9 114839860 1847 + 124281992 I e nomLeu3.chr10 97903297 281 + 106955855 M a score=16562.000000 s hg38.chr12_KI270834v1_alt 95622 2 + 119498 aa s panTro5.chr12 127381247 2 + 137163284 aa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125731550 2 + 135337776 aa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245097 2 - 8369578 aa i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124017816 2 + 133663169 aa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128265909 2 + 137757926 aa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10664584 2 - 16319837 aa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12288627 2 + 20526591 aa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119259827 2 + 128539186 aa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 611293 2 + 6255621 AA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4637454 2 - 8658521 AA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114841707 2 + 124281992 AA i calJac3.chr9 I 1847 C 0 s saiBol1.JH378194 484250 2 - 9212255 AA i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1606037 2 + 5364348 AA i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I e cebCap1.NW_016107484v1 2901467 1635 + 4466143 I e nomLeu3.chr10 97903297 281 + 106955855 M a score=2157087.000000 s hg38.chr12_KI270834v1_alt 95624 262 + 119498 aactAACCATTAggccaggcgcggtggctcactcctgtaatcccagcactttgggccgccagggcgggcggatcatgaggtcaagagatggagaccatcctggccaacctggtgaaa-ccccgtctctactaaaaatacaaaaattagctgggcgtgttggcaggcacctgtagtcccagctactgggggggaggctgaggcaggagaatggcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcac s panTro5.chr12 127381249 259 + 137163284 aactcACCATTAggccaggcgtggtggctcactcctgtaatcccagcactttgggccgccagggcgggcggatcatgaggtcaagagatggagaccatcctggccaacctggtgaaa-ccccgtctctactaaaaatacaaaaattagctgggcgtgttggcaggcacctgtagtcccagctact---ggggaggctgaggcaggagaatggcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125731552 260 + 135337776 aactcACCATTAggccaggcgtggtggctcactcctgtaatcccagcactttgggccgccagggcgggcggatcatgaggtcaagagatggagaccatcctggccaacctggtgaaacccccgtctctactaaaaatacaaaaattagctgggcgtgttggcaggcacctgtagtcccagctact---ggggaggctgaggcaggagaatggcttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245099 259 - 8369578 aactcACCATTAggccaggcgtggtggctcactcctgtaatcccagcactttgggccgccagggcgggcggatcatgaggtcaagagatggagaccatcctggccaacctggtgaaa-ccccgtctctactaaaaatacaaaaattagctgggcgtgttggcaggcacctgtagtcccagctact---ggggaggctgaggcaggagaatggcttgaacccaggaggcggaggttgcagtgagccgagatcacgccactgcac i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124017818 259 + 133663169 aaCTCACCATTAggccaggcacagtggctcacgcctgtaatcccagcactttgggtcaccaaggtgggcagatcacaaggtcaagagatggagacgatcctggccaacgtggtgaaa-ccctgtctctactaaaaatacaaaaattagctgggtgtggtggcacgtgcctgtagtcctagctact---cgagaggctgaggcaggagaatggcttgaacccaggaggcggaggttgcagtgagccaagatcgtgccactgcac i rheMac8.chr11 C 0 I 10 s macFas5.chr11 128265911 259 + 137757926 aactcACCATTAggccaggcacagtggctcacgcctgtaatcccagcactttgggtcaccaaggtgggcagatcacaaggtcaagagatggagacgatcctggccaacgtggtgaaa-ccctgtctctactaaaaatacaaaaattagctgggtgtggtggcacgtgcctgtagtcctagctact---cgagaggctgaggcaggagaatggcttgaacccaggaggcggaggttgcagtgagccaagatcgtgccactgcac i macFas5.chr11 C 0 I 9 s macNem1.NW_012010578v1 10664586 259 - 16319837 aactcACCATTAggccaggcacagtggctcacgcctgtaatcccagcactttgggtcaccaaggtgggcagatcacaaggtcaagagatggagacgatcctggccaacatggtgaaa-ccctgtctctactaaaaatacaaaaattagctgggtgtggtggcacgtgcctgtagtcctagctact---cgagaggctgaggcaggagaatggcttgaacccaggaggcggaggttgcagtgagccaagatcgtgccactgcac i macNem1.NW_012010578v1 C 0 I 9 s cerAty1.NW_012001186v1 12288629 259 + 20526591 aactcACCATTAggccaggcacagtggctcacgcctgtaatcccagcactttgggtcgccgaggtgggcggatcacgaggtcaagagatggagaccatcctggccaacatggtgaaa-ccccgtccctactaaaaatacaaaaattagctgggtgtggtggcacgtacctgtagtcctagctact---cgagaggctgaggcaggagaatggcttgaacccaggaggcggaggttgcagtgagccaagatcgcgccactgcac i cerAty1.NW_012001186v1 C 0 I 7 s chlSab2.chr11 119259829 259 + 128539186 aactcACCATTAggccaggcacagtggctcacgcctgtaatcccagcactttgggtcaccgaggtgggcggatcacgaggtcaagagatggagaccatcctggccaacatggtgaaa-ccccgtctctactaaaaatacaaaaattagctgggtgtggtggcacgtgcctgtagtcctagctact---caagaggctgaggcaggagaatggcttgaacccaggaggcggaggttgcagtgagccaagatcacgccactgcac i chlSab2.chr11 C 0 I 5 s manLeu1.NW_012103587v1 611295 259 + 6255621 AACTCACCATTAggccaggcacagtggctcacgcctgtaatcccagcactttgggtcgccgaggtgggcggatcacgaggtcaagagatgcagacgatcctggccaacatggtgaaa-ccccgtctctactaaaaatacaaaaattagctgggtgtggtggcacgtgcctgtagtcctagctact---cgagaggctgaggcaggagaatggcttgaacccaggaggcggaggttgcagtgagccaagatcgtgccactgcac i manLeu1.NW_012103587v1 C 0 I 8 s colAng1.NW_012116043v1 4637456 259 - 8658521 AACTCACCATTAggccaggcacaatggctcacgcctgtaatcccagcactttgggtcgccgaggtgggcggatcacgaggtcaagagatgaagaccatcctggccaacatggtgaaa-ccccgtctctactaaaaatacaaaaattagctgggtgtggtggcacatgcctgtagtcctagctact---cgagaggctgaggcaggagaatggcttgaacctgggaggcggaggttgcagtgagccaagatcatgccactgcac i colAng1.NW_012116043v1 C 0 I 7 s calJac3.chr9 114841709 257 + 124281992 AACTCACCATTAggcctggcgtgggggctcatgcctgtaatcccagcacttcggaaggctgaggcaggcagatcaccaggtcaggagatgaagac-atcctggctaacatggtgaaa-ccttgtctttactaaaaatacaaaaattaactgggtgtgatagcgtgtgcctgtagtcccagct-ct---caggaggctgaggtggaagaatcacttgaacctgggaggcagaggttgcagtgagccgagattgcaccattgcac i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 484252 257 - 9212255 CACTCACCGTTAgaccaggcgcagtgactcacgcctgtaatcccagtactttggaaggctgaggcaggcggatctcaaggtcaagagatgaagac-atcctggctaacatggcgaaa-ccccgtctttactaaaaatacaaaaattaactgggcgtgatagcgtgtgcctgtagtcccagct-ct---cgggaggctgaggtggaagaattgcttgaactctggaggtggaggttgcagtgagccaagattgcaccattgcac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2903102 257 + 4466143 AACTCACCATTAggcctggcgcggtggctcacgcctgtaatcccagcactttggaaggctgaggcaggcggatcacaaggtcaagagatgaagac-atcctggctaacatggtgaaa-ccccgtctttactaaaaatacaaaaattaactgggcgtgatagcatgtgcctgtagtcccagct-ct---cgggaggctgaggtggaagaatcacttgaactctggagttggaggttgcagtgagccaagattgcaccattgcac i cebCap1.NW_016107484v1 I 1635 I 33 s aotNan1.NW_018491581v1 1606039 257 + 5364348 AACTCACCGTTAggcctggcatggtagctcacgcctgtaatcgcagcactttggaaggctgaggcaggcagatcacgaggtcaagagatgaagac-atcctggctaacatggtgaaa-ccccgtcctcactaaaaatacaaaaattaactgggcgtgatagcgtgtgcctgtagtcccagct-ct---cgggaggctgaggtggaagaatcgcttgaactctggaggctgaggttgcagtgagccgagattgcaccattgcac i aotNan1.NW_018491581v1 C 0 I 33 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I e nomLeu3.chr10 97903297 281 + 106955855 M a score=4210.000000 s hg38.chr12_KI270834v1_alt 95886 7 + 119498 ------------------------------------------AAaaaca s panTro5.chr12 127381508 7 + 137163284 ------------------------------------------AAaaaca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125731812 7 + 135337776 ------------------------------------------AAaaaca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245358 7 - 8369578 ------------------------------------------AAaaaca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97903579 7 + 106955855 ------------------------------------------AAAAACA i nomLeu3.chr10 M 281 C 0 s rheMac8.chr11 124018087 7 + 133663169 ------------------------------------------aaaaaca i rheMac8.chr11 I 10 C 0 s macFas5.chr11 128266179 7 + 137757926 ------------------------------------------aaaaaca i macFas5.chr11 I 9 C 0 s macNem1.NW_012010578v1 10664854 7 - 16319837 ------------------------------------------aaaaaca i macNem1.NW_012010578v1 I 9 C 0 s cerAty1.NW_012001186v1 12288895 7 + 20526591 ------------------------------------------aaaaaca i cerAty1.NW_012001186v1 I 7 C 0 s chlSab2.chr11 119260093 7 + 128539186 ------------------------------------------gaaaaca i chlSab2.chr11 I 5 C 0 s manLeu1.NW_012103587v1 611562 7 + 6255621 ------------------------------------------aaaaaca i manLeu1.NW_012103587v1 I 8 C 0 s colAng1.NW_012116043v1 4637722 7 - 8658521 ------------------------------------------aaaaaca i colAng1.NW_012116043v1 I 7 C 0 s calJac3.chr9 114841966 38 + 124281992 tctagcctgggcgacagagcgagactccatct---------gaaaaa-- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 484509 46 - 9212255 tccagcct-ggcgacagagcgagactccatctttaaaacaaaacaaa-- i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I e aotNan1.NW_018491581v1 1606296 33 + 5364348 I e cebCap1.NW_016107484v1 2903359 33 + 4466143 I a score=6857.000000 s hg38.chr12_KI270834v1_alt 95893 2 + 119498 ac s panTro5.chr12 127381515 2 + 137163284 ac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125731819 2 + 135337776 ac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245365 2 - 8369578 ac i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124018094 2 + 133663169 aa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266186 2 + 137757926 aa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10664861 2 - 16319837 aa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12288902 2 + 20526591 aa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260100 2 + 128539186 aa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 611569 2 + 6255621 aa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4637729 2 - 8658521 aa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842004 2 + 124281992 ac i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 484555 2 - 9212255 ac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2903392 2 + 4466143 aa i cebCap1.NW_016107484v1 I 33 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I e aotNan1.NW_018491581v1 1606296 33 + 5364348 I e nomLeu3.chr10 97903586 0 + 106955855 C a score=23503.000000 s hg38.chr12_KI270834v1_alt 95895 8 + 119498 -aaa------caaac s panTro5.chr12 127381517 8 + 137163284 -aaa------caaac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125731821 8 + 135337776 -aaa------caaac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245367 8 - 8369578 -aaa------caaac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97903586 4 + 106955855 -----------AAAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018096 14 + 133663169 -aaacaaaagcaaac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266188 14 + 137757926 -aaacaaaagcaaac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10664863 14 - 16319837 -aaacaaaagcaaac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12288904 14 + 20526591 -aaacaaaagcaaac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260102 14 + 128539186 -aaacaaaagcaaac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 611571 14 + 6255621 -aaacaaaagcaaac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4637731 14 - 8658521 -aaacaaaagcaaac i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842006 7 + 124281992 -aaa-------caaa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 484557 7 - 9212255 -aaa-------acaa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2903394 7 + 4466143 -aaa-------aaaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1606329 8 + 5364348 aaaa-------aaaa i aotNan1.NW_018491581v1 I 33 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I e otoGar3.GL873618 4324389 3804 + 7922563 I a score=342905.000000 s hg38.chr12_KI270834v1_alt 95903 34 + 119498 aaaaaaa-cTCACC--ATTTCAGTTGGTTTTTGAAAA s panTro5.chr12 127381525 34 + 137163284 aaaaaaa-cTCACC--ATTTCAGTTGGTTTTTGGAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125731829 34 + 135337776 aaaaaaa-cTCACC--ATTTCAGTTGGTTTTTGGAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245375 35 - 8369578 aaaaaaacCTCACC--ATTTCAGTTGGTTTTTGGAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97903590 35 + 106955855 AAAAAAAACTCACC--ATTTCAGTTGGTTTTTGGAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018110 34 + 133663169 aaaaaGA-CTCACC--ATTTCGGTTGGTTTTTGGAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266202 34 + 137757926 aaaaaGA-CTCACC--ATTTCGGTTGGTTTTTGGAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10664877 34 - 16319837 aaaaaGA-CTCACC--ATTTCGGTTGGTTTTTGGAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12288918 34 + 20526591 aaaaaaa-CTCACC--ATTTCAGTTGGTTTTTGGAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260116 34 + 128539186 aaaaaaa-CTCACC--ATTTCAGTTGGTTTTTGGAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 611585 34 + 6255621 aaaaaaa-CTCACC--ATTTCAGTTGGTTTTTGGAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4637745 34 - 8658521 aaaaaaC-CTCACC--ATTTCAGTTGGTTTTTGGAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842013 34 + 124281992 caaacaa-CTCATG--ATTTCAGTTGGTTTTTGGAAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 484564 34 - 9212255 aaaaaac-CTCACC--ATTTCAGTTGGTTTTGGGAAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2903401 34 + 4466143 aaaaaaa-aTCACC--ATTTCAGTTGGTTTTTGGAAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1606337 34 + 5364348 aacaaaa-CTCACC--ATTTCAGTTGGTTTTTGGAAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4328193 36 + 7922563 aaaaagt-tccatcttatattagcagatttttggaaa i otoGar3.GL873618 I 3804 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6738493 4624 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I a score=584946.000000 s hg38.chr12_KI270834v1_alt 95937 46 + 119498 GGAGTTGGGATAAACTCAGAATGGCCATTTTTAACCAGGGGCCTGT s panTro5.chr12 127381559 46 + 137163284 GGAGTTGGGATAAACTCAGAATGACCATTTTTAACCAGGGGCCTGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125731863 46 + 135337776 GGAGTTGGGATAAACTCAGAATGACCATTTTTAACCAGGGGCCTGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245410 46 - 8369578 GCAGTTGGGATAAACTCAGAATGGCCATTTTTAACCAGGGGCCTGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97903625 46 + 106955855 GGAGTTGGGATAAACTCAGAATGGCCATTTTTAACCAGGGGCCTGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018144 46 + 133663169 GGAGTTGGGAGAAACTCAGAATGGCCATTTTTAAGCAGGGGCCTGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266236 46 + 137757926 GGAGTTGGGAGAAACTCAGAATGGCCATTTTTAAGCAGGGGCCTGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10664911 46 - 16319837 GGAGTTGGGAGAAACTCAGAATGGCCATTTTTAAGCAGGGGCCTGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12288952 46 + 20526591 GGAGTTGGGAGAAACTCAGAATGGCCATTTTTAAGCAGGGGCCTGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260150 46 + 128539186 GGAGTTGGGAGAAACTCAGAATGGCCATTTTTAAGCAGGGGCCTGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 611619 46 + 6255621 GGAGTTGGGAGAAACTCAGAATGGCCATTTTTAAGCAGGGGCCTGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4637779 46 - 8658521 GGAGTTGGGAGAAACTCAGAATGGCCGTTTTTAAGCAGGGGCCTGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842047 46 + 124281992 GGAGTTGGGATAAACTCAGAATGGCCGTTTTTAACCAGGGGTCTGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 484598 46 - 9212255 GGAGTTGGGATAAACGCAGAATGGCCATTTTTAACCAGGGGTCTGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2903435 46 + 4466143 GGAGTTGGGATAAACTCAGAATGGCCATTTTTAACCAGGGGTCTGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1606371 46 + 5364348 GGAGTTGGGATAAACTCAGAATGGCCATTTTTAACCAGGGGTCTGT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6743117 46 - 9870158 ggagTTGGGATAAGCTCAGAATGGCCATTTTTAACCAGAAGCCTGT i proCoq1.NW_012154285v1 I 4624 I 94 s otoGar3.GL873618 4328229 45 + 7922563 -ggGTTGAGAGAAACTCAGAACAACCATTTTTAACCAAAAGCCTAC i otoGar3.GL873618 C 0 I 5 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I a score=1154083.000000 s hg38.chr12_KI270834v1_alt 95983 130 + 119498 AGAGTGACCTTTAGGAAGCAGAGGGTGGGTAGG--ACACACTCGTGTCCCTTTCCAGTCCTCTTCTGCTGAGACACTGTA----CTGACAGTGATATTTTCCATGCACCAGCGTTTGGtgtatt-agtttgccatgc s panTro5.chr12 127381605 130 + 137163284 AGAGTGACCTTTAGGAAGCAGAGGGTGGGTAGG--ACACACTCGTGTCCCTTTCCAGTCCTCTTCTGCTGAGACACTGTA----CTGACAGTGATATTTTCCATGCACCAGTGTTTGGtgtatt-agtttgccatgc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125731909 130 + 135337776 AGAGTGACCTTTAGGAAGCAGAGGGTGGGTAGG--ACACACTCGTGTCCCTTTCCAGTCCTCTTCTGCTGAGACACTGCA----CTGACAGTGATATTTTCCATGCACCAGTGTTTGGtgtatt-agtttgccatgc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245456 130 - 8369578 AGAGTGACCTTTAGGAAGCAGAGGGTGGGTAGG--ACACACTCGTGTCCCTTTCCAGTCCTCTTCTGCTGAGACACTGTA----GTGACAGTGATATTTTCCATGCACCAGTGTTTGGtgtatt-agtttgccatgc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97903671 130 + 106955855 AGAGTGACCTTTAGGAAGCAGAGGGTGGGTGGG--GCACACTCGTGTCCCCTTCCAGTCCTCTTCTGCTGAGACACTGCA----CTGACAGTGCTATTTCCCATGCACCGGCGTTGGGtgtatt-agtttgccatgc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018190 132 + 133663169 AGAGCGACCTTTAGAAAGCAGA-GGTGGACAGGATGCACACTTGCATCGCTTTCCAGTCCTCTCTTGCTGAGACACTGCG----CTGACAGTGATATTTTCCATGCACCAGTGCTTGTtgtattaagtgtgtcatgc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266282 132 + 137757926 AGAGCGACCTTTAGAAAGCAGA-GGTGGACAGGATGCACACTTGCATCGCTTTCCAGTCCTCTTTTGCTGAGACACTGCG----CTGACAGTGATATTTTCCATGCACCAGTGCTTGTtgtattaagtttgtcacgc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10664957 132 - 16319837 AGAGCGACCTTTAGAAAGCAGA-GGTGGACAGGATGCACACTTGCATCCCTTTCCAGTCCTCTTTTGCTGAGACACTGCA----CTGACAGTGATATTTTCCATGCACCAGTGCTTGTtgtattaagtttgtcatgc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12288998 130 + 20526591 AGAGCGACCTTTAGAAAGCAGA-GGTGGACAGG--GCACACTTGCATCCCTTTCCAGTCCTCTTTTGCTGAGACACTGCA----CTGACAGTGATATTTTCCATGCACCAGTGCTGCTtgtattaagtttgtcatgc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260196 130 + 128539186 AGAGCGACCTTTAGAAAGCAGA-GGTGGACAGG--GCACACTTGCATCCCTTTCCAGTCCTCTTTTGCTGAGACACTGTA----CTGACAGTGATATTTTCCATGCACCAATGCTTGTtgtattaagtttgccatgc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 611665 130 + 6255621 AGAGCGACCTTTAGAAAGCAGA-GGTGGACAGG--GCACACTTGCATCCCTTTCCAGTCCTCTTTTGCTGAGACACTGCA----CTGACAGTGATATTTTCCATGCACCAGTGCTTGTtgtattaagtttgtcatgc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4637825 130 - 8658521 AGAGCGACCTTTAGAAAGCAGA-GGTGGACAGG--ACACACTTGCATCCCTTTCCAGTCCTCTTTTGCTGAGACACTGTA----CTGACACTGATATTTTCCATGCACCAGTGCTTGTtgtattaagtttgccatgc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842093 134 + 124281992 AGAGTGACCTCTAGAAAGCAGAGGGTGGGTAAG--GCACGCCCGTGTCGCCACCCAGTCCTCTTTTGCTGAGACACTGTACTTACTGACAGCGATATTTCACATGCACCAGTGCTTGGtgtatt-tgtttgccatgc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 484644 134 - 9212255 AGAGTGACCTCTAGAAAGCAGAGGGTGGGTAAG--GCACGCCCATGTCCCCACCCAGTCCTCTTTTGCTGAGACACTGTACTTCCTGACAGTGATATTTCACATGCACCAGTGCTTGGtgtatt-agtttgccatgc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2903481 130 + 4466143 AGAGTGACCTCTAGAAAGCAGAGGGTGGGTAAG--GCACGCCCGTGTCCCC-CCCAGTCCTCTTGTGCTGAGATACTGTACTTCCTGACAGTGGTATTTCACATGCACCAGTGCT---tgtatt-agtttgccatgc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1606417 134 + 5364348 AGAGTGACCTCTAGAAAGCAGAGGGTGGGTAAG--GCACGCCCGTGTCCCCACCCTGTCCTCTTTTGCTGAGACCCTGTACTTACTGACAGTGATATTTCACATGCACCAGTGCTTGGtgtatt-agtgtgccatgc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4328279 95 + 7922563 ACAGTGAGTCTTAGAAAG-AGA----------G----------------------AGTC----TTTGATAAGACACTGTC----CTGTTAATGATGTTCTATATTCACTAGGGGTTGGCAAatt-agtttgctggga i otoGar3.GL873618 I 5 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6743163 94 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I a score=1152561.000000 s hg38.chr12_KI270834v1_alt 96113 99 + 119498 ctgccataacaaaataccaccgactgggtggctt--aagcaacagaaatttattttctc-atagttttggaggtcagaagtccaaaatcaaggttttggtag s panTro5.chr12 127381735 99 + 137163284 ctgccataacaaaataccaccgactgggtggctt--aagcaacagaaatttattttctc-atagttttggaggtcagaagtccaaaatcaaggtttcggtag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732039 99 + 135337776 ctgccataacaaaataccaccgactgggtggctt--aagcaacagaaatttattttctc-atagttttggaggtcagaagtccaaaatcaaggttttggtag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245586 99 - 8369578 ctgccataacaaaataccaccgactgggtggctt--aagcaacagaaatttattttctc-atagttttggaggtcagaagtccaaaatcaaggttttggtag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97903801 98 + 106955855 ccgccgtaacaaaaaaccactgactgggtggctt--aagcaacagaaatttattttctc-atagtttcggaggtgagaagtccaaaatcaaggttt-ggtgg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018322 99 + 133663169 ctgccttaacaaaatgccaccgactgggtggctt--aagcaacagaaatttattttctc-atagttttggaggtcagaagtccaaaatcaaggttttggtag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266414 99 + 137757926 ctgccttaacaaaataccaccgactgggtggctt--aagcaacagaaatttattttctc-atagttttggaggtcagaagtccaaaatcaaggttttggtag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665089 99 - 16319837 ctgccttcacaaaataccaccgactgggtggctt--aagcaacagaaatttattttctc-atagttttggaggtcagaagtccaaaatcaaggttttggtag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289128 99 + 20526591 ctgccttaacaaaataccaccgactgggtggctt--aagcaacagaaatttattttctc-atagttttggaggtcagaagtccaaaatcaaggttttggtag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260326 100 + 128539186 ctgccttaacaaaataccaccgactgggaggctt--aagcaacagaaatttattttctcaagagttttggaggtcagaagtccaaaatcaaggttttggtag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 611795 99 + 6255621 ctgccttaacaaaataccaccgactgggtggctt--aagcaacagaaatttattttctc-atagttttggaggtcagaagtccaaaagcaaggttttggtag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4637955 99 - 8658521 ctgccttaacaaaataccaccgactgggtggctt--aagcaacagaaatttattttctc-atagttttggaggtcagaagtccaaaatcaagattttggtag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842227 97 + 124281992 ccactgtaacaaaacaccaccgactgggtggctg--aagcaacagaaatttattttctc-attgtcttggaggccggaagtccaaaatcaagttg--aatag i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 484778 97 - 9212255 ccaccgtaacaaaataccaccgactgggtggctt--aagcaacagaaatgtattttctc-atagtcttggaggctggaagtccaaaatcaaggtg--agtag i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2903611 97 + 4466143 ccaccgtaacaaaataccactgaccgggtggctt--aagcaacagaaatttattttctc-atagtcttggaggccggaaatccaaaatcaaggtg--aatag i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1606551 97 + 5364348 ccaccataacaaaataccgccaactgcgtggctt--aagcaacagaaatttattttctc-atagtcttggaggccggaagtccaaaatcaaggtg--aatag i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6743257 99 - 9870158 ctgccatagaaaaatgccacaggctcggtagctt--acccaacaggaatttattttctc-atggttctggaggccagaagtccaggatcaaggttttggtaa i proCoq1.NW_012154285v1 I 94 I 90 s otoGar3.GL873618 4328374 101 + 7922563 ctgccataagaaaataccacagactaggtggcttaaacttaacagaaatttattttttc-atagttccggaggttggaagtccaacatcaaggtcttgatag i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I a score=769248.000000 s hg38.chr12_KI270834v1_alt 96212 77 + 119498 gtttcgtttctccttaggatgctccccttggcttgtaggaggctgtcttcctgctctgtccacacaaggtctttctt s panTro5.chr12 127381834 77 + 137163284 gtttcgtttctccttaggatgctccccttggcttgtaggaggctgtcttcctgctctgtccacacaaggtctttctt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732138 77 + 135337776 gtttcgtttctccttaggatgctccccttggcttgtaggaggctgtcttcctgctctgtccacacaaggtctttctt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245685 77 - 8369578 gtttcgtttctccttaggatgctccccttggcttgtaggaggctgtcttcctgctctgtccacacaaggtctttctt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97903899 77 + 106955855 gtttcgtttctcctgaggacgctccccttggcttgtaggaggctgtcttcctgctctgtctgcacaaggtctttctt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018421 77 + 133663169 atttcgtttctccttaggacgctccccttggcttgcaggaggccgtcttcctgctgtgtctgcacaaagtctttctt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266513 77 + 137757926 atttcgtttctccttaggacgctccccttggcttgcaggaggccgtcttcctgctgtgtctgcacaaagtctttctt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665188 77 - 16319837 atttcgtttctccttaggacgctccccttggcttgcaggaggccgtcttcctgctgtgtctgcacaaagtctttctt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289227 77 + 20526591 atttcgtttctccttaggacgctccccttggcttgcaggaggccgtcttcctgctgtgtctgcacaaagtctttctt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260426 77 + 128539186 atttcgtttctccttaggacgctccccttggcttgcaggaggccgtcttcctgctgtgtccgcacaaggtgtttctt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 611894 77 + 6255621 atttcgtttctccttaggacgctccccttggcttgcaggaggccgtcttcctgctgtgtctgcacaaagtctttctt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638054 77 - 8658521 attttgtttctccttaggacgctccccgtggcttgcaggaggccgtcttcctgctgtgtccacacaaggtctttctt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842324 77 + 124281992 atttcctttctccttaggacgctccccttggcttgtaggaggctgtcttgtagctgtgtccccacagggtctgtctt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 484875 77 - 9212255 atttcctttctccttaggacgctccccttggctcgtaggaggctgtctcgcagctatgtccgcatggggtctgtctt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2903708 77 + 4466143 atttcctttctccttaggacgctccccttggcttgtaggaggctgtctcgaagctgtgtccgcacagggtccatctt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1606648 77 + 5364348 atttcctttctccttaggacgctccccttgggctgtaggaggctgtcttgtagctgcgtccgcacagggtccgtctt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4328475 71 + 7922563 atttggtttctcctggggactctcttctgggcttgcc-gatgctggtcttctgctgtgtcctcacccggtct----- i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6743356 90 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I e canFam3.chr26 33177693 8 - 38964690 I a score=172980.000000 s hg38.chr12_KI270834v1_alt 96289 17 + 119498 ctctgcgtgtgaatccc s panTro5.chr12 127381911 17 + 137163284 ctctgcgtgtgaatccc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732215 17 + 135337776 ctctgcgtgtgaatccc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245762 17 - 8369578 ctctgcgtgtgaatccc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97903976 17 + 106955855 ctctgcgtgtgaatccc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018498 17 + 133663169 ctctgcatatgaatccc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266590 17 + 137757926 ctctgcatatgaatccc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665265 17 - 16319837 ctctgcatatgaatccc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289304 17 + 20526591 ctctgcatgtgaatccc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260503 17 + 128539186 ctgtgcatgtgaatccc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 611971 17 + 6255621 ctctgcatgtgaatccc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638131 17 - 8658521 ctctgcgtgtgaatccc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842401 15 + 124281992 ctctgtgt--gaatccc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 484952 17 - 9212255 ctctgtgtgcgaatccc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2903785 17 + 4466143 ctctgtttgcaaatccc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1606725 17 + 5364348 ctctgtgtgcaaatccc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4328546 16 + 7922563 -tctgtgtgtgcatctt i otoGar3.GL873618 C 0 I 2 s canFam3.chr26 33177701 17 - 38964690 CTGTGCATGTGCCCCTT i canFam3.chr26 I 8 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6743356 90 - 9870158 I e dasNov3.JH568189 863134 1911 - 1116856 I a score=1024529.000000 s hg38.chr12_KI270834v1_alt 96306 87 + 119498 tggtgtctctgtgtgtccaaatttcctcctcttataaggacaccagtgaggttggact-ggg-----cccaccttaatggcctcatttgaact s panTro5.chr12 127381928 87 + 137163284 tggtgtctctgtgtgtccaaatttcctcctcttataaggacaccagtgaggttggact-ggg-----cccaccttaatggcctcatttgaact i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732232 87 + 135337776 tggtgtctctgtgtgtccaaatttcctcctcttataaggacaccagtgaggttggact-ggg-----cccaccttaatggcctcatttgaact i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245779 87 - 8369578 tggtgtctctgtgtgtccaaatttcctcctcttataaggacaccagtgaggttggact-ggg-----cccaccttaatggcctcatttgaact i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97903993 87 + 106955855 tggtgtctctgtgtgtccaaatttcctccttttataaggacaccagtgaggttggact-ggg-----ctcaccctaatggcctcatttgaact i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018515 87 + 133663169 tggtgtctgtgcgtgtccaaatttcctcctcttgtaaggacaccagtgaggttggact-ggg-----cccaccctaatggcctcatttgaact i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266607 87 + 137757926 tggtgtctgtgcgtgtccaaatttcctcctcttgtaaggacaccagtgaggttggact-ggg-----cccaccctaatggcctcatttgaact i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665282 87 - 16319837 tggtgtctgtgcgtgtccaaatttcctcctcttgtaaggacaccagtgaaattggact-ggg-----cccaccataatggcctcatttgaact i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289321 87 + 20526591 tggggtctgtgcatgtccaaatttcctcctcttgtaaggacaccagtgaggttggact-ggg-----cccaccctaatggcctcatttgaact i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260520 87 + 128539186 tggtgtctgtgtgtgtccagatttcctcctcttgtaaggacaccagtgaggttggact-ggg-----cccaccctaatggcctcatttgaact i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 611988 87 + 6255621 tggggtctgtgtgtgtccaaatttcctcctcttgtaaggacaccagtgaggttggact-ggg-----cccaccctaatggcctcatttgaact i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638148 92 - 8658521 tggtgtctgtgtgtgtccaaatgtcctcctcttgtaaggacaccagtgaggttggact-gggcccaccccaccctaatggcctcatttgaact i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842416 86 + 124281992 t-gcgtctctgtgtgtccaaacttcctcctcgtgtaaggacaccagtgaggttggact-gcg-----cccaccctaatggcctcatttgaact i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 484969 87 - 9212255 tggcgtctctgtgtgtccaaacttcctcctcgtataaggacaccggtgaggtcggact-gca-----cccaccctaatggcctcatctgaact i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2903802 87 + 4466143 tggcgtctctgtgtgtccaaacttcctcctcgtataaggacaccagtgaggttggact-gca-----cccaccctaatggcctcatttgaact i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1606742 87 + 5364348 tggcgtctctgtgtgtccaaacttcctcctcgtataaggacaccagtgaggttggact-gtg-----cccaccctaatggcctcatttgaact i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6743446 88 - 9870158 tggtttctctgtgtgtccaaattccctcttgttataaggacactaatgatactggattcgag-----cccacgctgatggtcgcattttaact i proCoq1.NW_012154285v1 I 90 C 0 s otoGar3.GL873618 4328564 88 + 7922563 ttgtttctatgtgtgtccaaatttcctctttgtatagggtctctaacgagattgggttagag-----cccactctaatggtctcatttaaact i otoGar3.GL873618 I 2 C 0 s canFam3.chr26 33177718 51 - 38964690 -----TGTCTGTCTGTCTAGATCTCTTCTGTTTAG------------GATGTGAGGct-cag-----tttccct------------------- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9484332 5339 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e dasNov3.JH568189 863134 1911 - 1116856 I a score=281882.000000 s hg38.chr12_KI270834v1_alt 96393 30 + 119498 taatcacctatttaaagaccc---------------tgtctcca--a s panTro5.chr12 127382015 30 + 137163284 taatcatctatttaaagaccc---------------tgtctcca--a i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732319 30 + 135337776 taatcatctatttaaagaccc---------------tgtctcca--a i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245866 30 - 8369578 taatcatctatttaaagaccc---------------tgtctcca--a i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904080 30 + 106955855 taatcatctctttaaagaccc---------------tgtctcca--a i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018602 45 + 133663169 taatcatctctttaaaggcccaaccccttaagagatggtctcca--a i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266694 45 + 137757926 taatcatctctttaaaggcccaaccccttaagagatggtctcca--a i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665369 45 - 16319837 taatcatctctttaaaggcccaaccccttaagagatggtctcca--a i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289408 30 + 20526591 taatcatctctttaaagaccc---------------tgtctcca--a i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260607 30 + 128539186 tcatcatctctttaaagaccc---------------tgtctcca--a i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612075 30 + 6255621 taatcatctctttaaagaccc---------------tgtctcca--a i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638240 30 - 8658521 taatcatctctttaaagaccc---------------tgtctcca--a i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842502 28 + 124281992 taaat-gctctctaaagaacc---------------tgtctccg--- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485056 29 - 9212255 ttaacagctttctaaagaccc---------------tgtcttca--- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2903889 30 + 4466143 taaacagctctctaaagaccc---------------tgtctccaa-- i cebCap1.NW_016107484v1 C 0 I 17 s aotNan1.NW_018491581v1 1606829 30 + 5364348 taaacagctctctaaagaccc---------------tgtctcca-a- i aotNan1.NW_018491581v1 C 0 I 17 s micMur3.chr21 9489671 30 - 31815103 taatcacgtctttaaagaccc---------------tgtgtgca--a i micMur3.chr21 I 5339 C 0 s proCoq1.NW_012154285v1 6743534 30 - 9870158 caatcacatctttaaagaccc---------------tatgacca--a i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4328652 30 + 7922563 taatcacttattttaaggctc---------------tatatcca--a i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33177769 30 - 38964690 tcattccctctttaaaggccc---------------cttctcca--a i canFam3.chr26 C 0 C 0 e mm10.chr5 124821501 1079 + 151834684 I e dasNov3.JH568189 863134 1911 - 1116856 I a score=48973.000000 s hg38.chr12_KI270834v1_alt 96423 4 + 119498 atac s panTro5.chr12 127382045 4 + 137163284 atac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732349 4 + 135337776 atac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245896 4 - 8369578 atac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904110 4 + 106955855 atac i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018647 4 + 133663169 atac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266739 4 + 137757926 atac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665414 4 - 16319837 atac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289438 4 + 20526591 atac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260637 4 + 128539186 acac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612105 4 + 6255621 atac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638270 4 - 8658521 atac i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842530 4 + 124281992 atac i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485085 4 - 9212255 atac i saiBol1.JH378194 C 0 C 0 s micMur3.chr21 9489701 4 - 31815103 atac i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6743564 4 - 9870158 atac i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4328682 4 + 7922563 atat i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33177799 4 - 38964690 acat i canFam3.chr26 C 0 C 0 e mm10.chr5 124821501 1079 + 151834684 I e dasNov3.JH568189 863134 1911 - 1116856 I e aotNan1.NW_018491581v1 1606859 17 + 5364348 I e cebCap1.NW_016107484v1 2903919 17 + 4466143 I a score=704332.000000 s hg38.chr12_KI270834v1_alt 96427 89 + 119498 tgtcatattctcaggtactggaagttg-----gggcttcaacataggaagtttggaga---------------aatataatttagcccttaacaGTTGGGCAGA-AAAGA s panTro5.chr12 127382049 89 + 137163284 tgtcatattctcaggtactggaagttg-----gggcttcaacataggaagtttggaga---------------aatataatttagcccttaacaGTTGGGCAGA-AAAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732353 89 + 135337776 tgtcatattctcaggtactggaagttg-----gggcttcaacataggaagtttggaga---------------aatataatttagcccttaacaGTTGGGCAGA-AAAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245900 88 - 8369578 tgtcatattctcaggtactggaagttg-----gggcttcaacacaggaagtttggaga---------------aatataatttag-ccttaacaGTTGGGCAGA-AAAGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904114 88 + 106955855 cgtcatattctgaggtactggaagttg-----gggcttcaacatatgaagtttggaga---------------aatataatttagcccttaacaGTTGGGCAG--AAAGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018651 89 + 133663169 catcatattctgaggtactggaagctg-----gggcttcaacatatgaagtttggaga---------------aatataatttagcccttaacaGTTGGGCAGA-AAAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266743 89 + 137757926 catcatattctgaggtactggaagctg-----gggcttcaacatatgaagtttggaga---------------aatataatttagcccttaacaGTTGGGCAGA-AAAGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665418 89 - 16319837 catcatattctgaggtactggaagctg-----gggcttcaacatatgaagtttggaga---------------aatataatttagcccttaacaGTTGGGCAGA-AAAGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289442 89 + 20526591 catcatattctgaggtactggaagctg-----gggcttcaacatatgaagtttggaga---------------aatataatttagcccttaacaGTTGGGCAGA-AAAGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260641 89 + 128539186 catcatattctgaggtactggaagttg-----gggcttcaacatatgaagtttggaga---------------aatataatttagcccttaacaGTTGGGCAGA-AAAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612109 89 + 6255621 catcatattctgaggtactggaagctg-----gggcttcaacatatgaagtttggaga---------------aatataatttagcccttaacaGTTGGGCAGA-AAAGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638274 89 - 8658521 catcatattctgaggtactggaagtta-----gggcttcaacatgtgaagtttggaga---------------aatataatttagcccttaacaGATGGGCAGA-AAAGA i colAng1.NW_012116043v1 C 0 C 0 s micMur3.chr21 9489705 95 - 31815103 agt-atattctgaggcactggggctta-----gggcttcaacataggaagtttggggggggg--------gtggatataatccagcccataacaGTTGGACGGA-AAAGA i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6743568 103 - 9870158 agt-atattctgaggcactgggggtta-----gggcttcaacatacgaagtttgggggggggcgcggggcacagatataattcagcccattacaGCTGGACAGA-AAAGA i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4328686 89 + 7922563 agtcatattctgaggtacggggggtta-----gggtatgaaggta-----tttgggggtggg-----------gatataattcagccagtaacaATTTGACAAATAAAGA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33177803 94 - 38964690 ggtcacatt-ggaggaacaaggggtcgtgtcaggggttccacatgtggattttgggggg--------------gacataattcagcccctaccaGTAGGGCAGG-AACAA i canFam3.chr26 C 0 C 0 e mm10.chr5 124821501 1079 + 151834684 I e dasNov3.JH568189 863134 1911 - 1116856 I e aotNan1.NW_018491581v1 1606859 17 + 5364348 I e cebCap1.NW_016107484v1 2903919 17 + 4466143 I e saiBol1.JH378194 485089 0 - 9212255 C e calJac3.chr9 114842534 0 + 124281992 C a score=257031.000000 s hg38.chr12_KI270834v1_alt 96516 27 + 119498 GATTGTTTCTATAGGGCTCACTTAAGT s panTro5.chr12 127382138 27 + 137163284 GATTGTTTCTATAGggctcacttaagt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732442 27 + 135337776 GATTGTTTCTATAGggctcacttaagt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8245988 27 - 8369578 GATTGTTTCTATAGggctcacttaagt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904202 27 + 106955855 GATTGTTTCTATAGGGCTCACTTAAGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018740 27 + 133663169 GATTGTTTCTATAGGACTCACttaagt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266832 27 + 137757926 GATTGTTTCTATAGGACTCACTTAAGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665507 27 - 16319837 GATTGTTTCTATAGGACTCACttaagt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289531 27 + 20526591 GATTGTTTCTATAGGACTCACttaagt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260730 27 + 128539186 GATTGTTTCTATAGGACTCACTTAAGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612198 27 + 6255621 GATTGTTTCTATAGGACTCACttaagt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638363 27 - 8658521 GATTGTTTCTATAGGACTCACttaagt i colAng1.NW_012116043v1 C 0 C 0 s micMur3.chr21 9489800 27 - 31815103 GGTTGTTCCTATAGGGCTCATTTAAGT i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6743671 27 - 9870158 GATTGTTCCTATAGGGCTCACTTAGGT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4328775 27 + 7922563 GGTTAGTCTTGTAGTGCTCACTTAAGA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33177897 11 - 38964690 GGTTG-------AGGACT--------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 865045 27 - 1116856 GACTGTTCCTATAGGGCTCACTTATGT i dasNov3.JH568189 I 1911 C 0 e mm10.chr5 124821501 1079 + 151834684 I e aotNan1.NW_018491581v1 1606859 17 + 5364348 I e cebCap1.NW_016107484v1 2903919 17 + 4466143 I e saiBol1.JH378194 485089 0 - 9212255 C e calJac3.chr9 114842534 0 + 124281992 C a score=141052.000000 s hg38.chr12_KI270834v1_alt 96543 14 + 119498 AGCCAACCC-----------------------TCCTA s panTro5.chr12 127382165 14 + 137163284 agccaaccc-----------------------tccta i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732469 14 + 135337776 agccaaccc-----------------------tccta i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246015 14 - 8369578 agccaaccc-----------------------tccta i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904229 14 + 106955855 AGCCAACCC-----------------------TCCTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018767 14 + 133663169 agccaaccc-----------------------tccta i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266859 14 + 137757926 AGCCAACCC-----------------------TCCTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665534 14 - 16319837 agccaaccc-----------------------tccta i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289558 14 + 20526591 agccaaccc-----------------------tccta i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260757 14 + 128539186 AACCAACCC-----------------------TCCTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612225 14 + 6255621 agccaaccc-----------------------tccta i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638390 14 - 8658521 agccaaccc-----------------------tccta i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842534 14 + 124281992 agtcaATAC-----------------------TTCGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485089 14 - 9212255 agtcaATAC-----------------------TTTGT i saiBol1.JH378194 C 0 C 0 s micMur3.chr21 9489827 14 - 31815103 AGCCAACCC-----------------------TCCTA i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6743698 14 - 9870158 AGCCAACTG-----------------------TCCTA i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4328802 37 + 7922563 AGCCAACCCTCTAAATcagtggttctcaactttccta i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33177908 13 - 38964690 -GTTGTCCC-----------------------TTGCA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 865072 14 - 1116856 AGCCAACCC-----------------------TTCTG i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124821501 1079 + 151834684 I e aotNan1.NW_018491581v1 1606859 17 + 5364348 I e cebCap1.NW_016107484v1 2903919 17 + 4466143 I a score=69220.000000 s hg38.chr12_KI270834v1_alt 96557 4 + 119498 ACAC s panTro5.chr12 127382179 4 + 137163284 acac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732483 4 + 135337776 acac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246029 4 - 8369578 acac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904243 4 + 106955855 ACAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018781 4 + 133663169 acac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266873 4 + 137757926 ACAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665548 4 - 16319837 acac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289572 4 + 20526591 acac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260771 4 + 128539186 ACAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612239 4 + 6255621 acac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638404 4 - 8658521 acac i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842548 4 + 124281992 ACAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485103 4 - 9212255 ACAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2903936 4 + 4466143 ACAC i cebCap1.NW_016107484v1 I 17 C 0 s aotNan1.NW_018491581v1 1606876 4 + 5364348 ACAC i aotNan1.NW_018491581v1 I 17 C 0 s micMur3.chr21 9489841 4 - 31815103 ACAC i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6743712 4 - 9870158 ACAC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4328839 4 + 7922563 acac i otoGar3.GL873618 C 0 I 175 s canFam3.chr26 33177921 4 - 38964690 GCTC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 865086 4 - 1116856 AAAC i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124821501 1079 + 151834684 I a score=1001256.000000 s hg38.chr12_KI270834v1_alt 96561 80 + 119498 ATATAAAGTAGAATTCAAATTACAAA-TTTTGACTTAAACAATTTTTTTTTCCAGGAACACATGTCTTCTGTT------------------------------------------------AAAAAGCA s panTro5.chr12 127382183 80 + 137163284 atataaagtagaattcaaattacaaa-ttttgacttaaacaatttttttttccaggaacacatgtcttctgtt------------------------------------------------aaaaagca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732487 80 + 135337776 atataaagtagaattcaaattacaaa-ttttgacttaaacaatttttttttccaggaacacatgtcttctgtt------------------------------------------------aaaaagca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246033 80 - 8369578 atataaagtagaattcaaattacaaa-ttttgacttaaacaatttttttttccaggaacacatgtcttctgtt------------------------------------------------aaaaagca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904247 76 + 106955855 ATATAAAGT-GAATTCAGATTACAGA-TTTTGACTTATACAA-TTTTTTTTCCAGGAACAC--GTCTTATGTT------------------------------------------------AAAAAGCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018785 80 + 133663169 atatgaagtagaattcaaattacaaa-ttttgacttacacaattttattttccaggaacacatgtcttctgtt------------------------------------------------aaaaagca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266877 80 + 137757926 ATATGAAGTAGAATTCAAATTACAAA-TTTTGACTTACACAATTTTATTTTCCAGGAACACATGTCTTCTGTT------------------------------------------------AAAAAGCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665552 80 - 16319837 atatgaagtagaattcaaattacaaa-ttttgacttacacaattttattttccaggaacacatgtcttctgtt------------------------------------------------aaaaagca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289576 80 + 20526591 atatgaagtagaattcaaattacaaa-ttttgacttacacaatttttttttccaggaacacatgtcttctgtt------------------------------------------------aaaaagca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260775 79 + 128539186 ATATGAAGTAGAATTCAAATTACAAA-TTTTGACTTACACAATTTTTTTT-CCAGGAACACATGTCTTCTGTT------------------------------------------------AAAAACCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612243 80 + 6255621 atatgaagtagaattcaaattacaaa-tgttgacttacacaattttttttcccaggaacacatgtcttctgtt------------------------------------------------aaaaagca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638408 80 - 8658521 atatgaagtagaattcaaattacaaa-ttttgacttacacaatttttttttccaggaacacatgtcttctgtt------------------------------------------------aaaaagca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842552 79 + 124281992 CTATAAAGTAGAATTGAAATCACAAA-TTTTGACGTACACATTT-TTTCCCCCAGGAACACATGTCTTCTGTT------------------------------------------------AAAAAGCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485107 78 - 9212255 CTATAAAGTAGAATTCAAATCACAAA-TTTTGA--GACACATTTGTTTCCCCCAGGAACACATGTCTTCTGTT------------------------------------------------AAAAAGCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2903940 80 + 4466143 CTATAAAGTAGAATTCAAATCACAAA-TTTTGACTTTCACATTTTTTTTTCCCAGGAACACATGTCTTCTGTT------------------------------------------------AAAAAGCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1606880 78 + 5364348 CTATAAAGTAGAATTCAAATCACAAA-TTTTGACTTAAATATT--TTTTTCCCAGGAACACATGTCTTCTGTT------------------------------------------------AAAAAGCA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9489845 83 - 31815103 ATCT--AGTAGAGTTCAAATTGCAAA-TTTTGACTTATACGTT--GTTTCCCCAGAAACACATTTCTTCTGGT------------------------------------aaaaa-----aaaaaaaaca i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6743716 79 - 9870158 ATATAAAGTGGAATTCAAATCACAAA-TTTTGACTTAAACATT--GTTTCCCCAGAAACATATTTCTTCTGTT-----------------------------------------------AAAAAAACA i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4329018 77 + 7922563 ATATAAAATAGAATTCAAATCACAAA--TTTGTCTTATGACAC--TTTTCCCCAAGAACACATTTCTTCTGTT------------------------------------------------ATAAAACA i otoGar3.GL873618 I 175 C 0 s canFam3.chr26 33177925 128 - 38964690 ACAGAAGGTGGAATTCGAGTCACAGA-TGTTGACTTACACAGTTTTTTCCCCCAAGAACACATTTCTTCTGTTTCttttttttaagatttttattcatttatttatttgaaagagtctgagaaagagca i canFam3.chr26 C 0 I 157 s dasNov3.JH568189 865090 68 - 1116856 ATCTAAAGTAGAA-TCAGTTCATAAAATTTTGACTTATACAT---TGTTTTCCAGGGACATATTTCTTATGC--------------------------------------------------------- i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124821501 1079 + 151834684 I a score=4383254.000000 s hg38.chr12_KI270834v1_alt 96641 296 + 119498 AAAAAGAAGAACGCTGGTATTTTGCAT----CCATTAATAAAGAGTCTGTTGATGGAGTGTGTGTCCTCTGCAATagaggttggcaaccccctagccagca-tccaaatctggcccactgcctgcttttgtaaataaagttttattggaacagggccatatccatttgtatacatattgtctatggttgcttttgcactacaatggcggagttgagtggttatgacagagaccatctagcttccaaagccaaaaatatttactatctggccctttgtagaaagtttgccaacacctCTTCT s panTro5.chr12 127382263 296 + 137163284 aAAAAGAAGAAAGCTGGTATTTTGCAT----CCATCAATAAAGAGTCTGTTGATGGAGTGTGTGTCCTCTGCAATagaggttggcaaccccctagccagca-tccaaatctggcccactgcctgcttttgtaaataaagttttattggaacagggccatatccatttgtatacatattgtctatggttgcttttgcactacaatggcggagttgagtggttatgacagagaccatctagcttccaaagccaaaaatatttactatctggccctttgtagaaagtttgccaacacctCTTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732567 296 + 135337776 aAAAAGAAGAAAGCTGGTATTTTGCAT----CCATCAATAAAGAGTCTGTTGATGGAGTGTGTGTCCTCTGCAATagaggttggcaaccccctagccagca-tccaaatctggcccactgcctgcttttgtaaataaagttttattggaacagggccatatccatttgtatacatattgtctatggttgcctttgcactacaatggcggagttgagtggttatgacagagaccgtctagcttccaaagccaaaaatatttactatctggccctttgtagaaagtttgccaacacctCTTCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246113 294 - 8369578 aAAAAGAAGAAAGCTGGTATTTTGCAT----CCATCAAT--AGAGTCTGTTGATGGAGTGTGTGTCCTCTGCAATagaggttggcaaccccctagccagca-tccaaatctggcccactgcctgcttttgtaaataaagttttattggaacagggccatatccatttgtatacatattgtctatggttgcttttgcactacagtggcggagttgagtggttatgacagagaccatctagcttccaaagccaaaaatacttactatctggccctttgtagaaagtttgccaacacctCTTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904323 296 + 106955855 AAAAAGAAGAAAGCTGGTATTTTGCAT----CCATCAATAGAGAGTCTGTTGATGGAGTGTGCGTCCTCTGCAGTagaggttgggaaacccctagccagca-tccaaatctggcccactgcctgcttttgtaaataaagttttattggaacagggccatatccatttgtatacatattgtctatggttgcttttgcactacaatggtggagatgagtggttatgacagagaccatctagcttccaaagccaaaaatacttactatctggccctttgtagaaagtttgccaacacctCTTCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124018865 288 + 133663169 aAAAAGAAGAAAGCTGGTATTTTGCAT----CCATCAATAAAGAGTCTGTTGATGGA--GTATGTCCTCTGCAGTagaggttggcaaacccctagccagca-tccaaatctggcccactgcctgcttttgtaaataaagttttattggaacaggaccatatccattagtatacatattgtctatggttgcttttgcactacagtggtggagttgagtggttat------gaccatctagcttccaaagccaaaattatttactatgtggccctttgcagaaggtttgccaacacctCTCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128266957 288 + 137757926 AAAAAGAAGAAAGCTGGTATTTTGCAT----CCATCAATAAAGAGTCTGTTGATGGA--GTATGTCCTCTGCAGTagaggttggcaaacccctagccagca-tccaaatctggcccactgcctgcttttgtaaataaagttttattggaacaggaccatatccattagtatacatattgtctatggttgcttttgcactacagtggtggagttgagtggttat------gaccatctagcttccaaagccaaaaatatttactatgtggccctttgcagaaggtttgccaacacctCTCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665632 288 - 16319837 aAAAAGAAGAAAGCTGGTATTTTGCAT----CCATCAATAAAGAGTCTGTTGATGGA--GTATGTCCTCTGCAGTagaggttggcaaacccctagccagca-tccaaatctggcccactgcctgcttttgtaaataaagttttattggaacaggaccatatccattagtatacatattgtctatggttgcttttgcactacagtggtggagttgagtggttat------gaccatctagcttccaaagccaaaaatatttactatgtggccctttgcagaaggtttgccaacacctCTCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289656 290 + 20526591 aAAAAGAAGAAAGCTGGTATTTTGCAT----CCATCAATAAAGAGTCTGTTGATGGAGTGTGTGTCCTCTGCAGTagaggctggcaaacccctagccagca-tccaaatctggcccactgcctgcttttgtaaataaagttttattggaacaggaccatatccattagtatacatattgtctatggttgcttttgcactacagtggtggagttgagtggttat------gaccatctagcttccaaagccaaaaatatttactatctggccctttgcagaaagtttgccaacacctCTCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119260854 290 + 128539186 AAAAAGAAGAAAGCTGGTATTTTGCAT----CCATCAATAAAGAGTCTGTTGATGGAGTGTGTGTCCTCTGCAGTagaggttggcaaacccctagccagca-tccaaatctggcccactgcctgcttttgtaaataaagttttattggaacaggaccatatccattagtatacatattgtctatggttgcttttgcactacagtggtggagttgagtggttat------gaccatctagcttccaaagccaaaaatatttactatctggccctttgtggaaagtttgccaacacctCTCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612323 290 + 6255621 aAAAAGAAGAAAGCTGGTATTTTGCAT----CCATCAATAAAGAGTCTGTTGATGGAGTGTGTGTCCTCTGCAGTagaggctggcaaacccctagccagca-tccaaatctggcccactgcctgcttttgtaaataaagttttattggaacaggaccatatccattagtatacatattgtctatggttgcttttgcactacagtggtggagttgagtggttat------gaccatctagcttccaaagccaaaaatatgtactatctggccctttgcagaaagtttgccaacACGTCTCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638488 290 - 8658521 aAAAAGAAGAAAGCTGGTATTTTGCAT----CCATCAATAAACAGTCTGTTGATGGAGTGTGTGTCCTCTGCAGTagaggttggcaaacccctagccagca-tccaaatctggcccactgcctgcttttgtaaataaagttttattggaacaggaccatatccattagtatacatattgtctatggttgcttttgcactacaatggtggagttgagtggttat------gaccatctagcttccaaagccaaaaatatttactatctggccctttgtagaaagtttgccaacacctCTTCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842631 296 + 124281992 AAAAAGAAGAAAGCTGGTATTTTGCAT----CCATCAATACAGAGTCTGTTGATGGAATGTGCATCCTCTGCAGcagaggttggcagacccccagccagca-tccaaatctggcccactgcctgcgtttgtaaataaagttttattggaacagggccatatccatttgtatacatattgtctgtggttgcttttgtactacaatggcagagttgagtggttatgacagagaccatctagcttccaaagccaaaaatatttactatctggccctttgtagaaagtttgccaacACTTCTTCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485185 296 - 9212255 AAAAAGAAGCAAGCTGGTATTTTGCAT----CCATCAATAAAGAGTCTGTTGATGGAGTGTGCATCCTCTGCAAcagaggttggcagaaccccaaccagca-tccaaatctggcccactgcctgtgtttgtaaataaagttttattggaacagggccatatccatttgtatacatattgtctgtggctgcttttgtactacaatggcagagttgagtggttatgacagagaccatctagcttccaaagccaaaagtatttactatctggccctttgtagaaagtttgccaacacttCTTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2904020 296 + 4466143 AAAAAGAAGAAAGCTGGTATTTTGCAT----CCATCAATAAAGAGTCTGTTGATGGAGTGTGCATCCTCTGCAAcagaggttggcagacccccagccagca-tccaaatctggcccactgcctgcgtttgtaaataaagttttattggaacagggccatatccatttgtatacatgttgtctgtggttgcctttgtactacaatggcagagttgagtggttatgacagagaccatctagcttccaaagccaaaaatatttactatctggccctttgtagaaagtttgccaacacttCTTCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1606958 293 + 5364348 AAAAAGA---AAACTGGTATTTTGCAT----CCATCAATAAAGAGTCTGTTGCTGGAGTGTGCATCCTCTGCAAcagaggttggcagacccccagccagca-tccaaatctggcccactgcctgcgtttgtaaataaagttttattggaacagggccatgtccatttgtttacatattgtctgtggttgcttttgtactacaatggcagagttgagtggttatgacagagaccatctagcttccaaagccaaaagtatttactatctggccttttgtagaaagtttgccaacacttCTTCT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9489928 296 - 31815103 aaaaagaagaaaTCTAGTATTTTGCAT----CCATCAATAAAGAGTCTGTCAATGGAGTGTGCTTCCTCTACAATagaggtt-gcaaagccccagccagcagtccagatctggcccacaacctccttttgtcaataaagttttattggaacactgccatactcttttgtatacatattgtctctggctattttctcactacgatggcagagttgggtagctatgatagagaccacctagattgcaaagcctaaaatatttactgtctggccctttacagagagtttgctggcatctCTTCT i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6743795 296 - 9870158 AAAAAGAAGAAATCTAGTATTTTGCAT----CCATCAATAAAGAGTCTGTTGATGGAGTGTGCTTCCTCTACAGcagagatt-gcaaacctacagccagcagtccagatccggcccacagcctccttttgtcaataaagttttgttggaacactgccatactctttcatatacatattgtctctggctactttcttactgcaatggcggagttgagtagttatgacagagaccagctagcttgcaaagccaaaaatatttactatttggccctttgcagagagtttgccgacacctCTTCT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4329095 282 + 7922563 AAAGAGAAGAAATCTAGTATTGTGTAT----CCATCAATGAAGAGTTTCTTGATGGAGAGTGCTTCCTTTGCAGTagaggcc-gt-aacctgcagtctgctgtccagatctggcccactacttgct-------------ttttattggggcactgccacatccttttgtatacatattgtctttggctactttcacacaacaaaggcagagcttagtagttatgacacagactacctagcttgcaaaccccaaaatattaactatctggccctttatggagagtttgccAGCACTTCTTTt i otoGar3.GL873618 C 0 I 294 s canFam3.chr26 33178210 291 - 38964690 AAGAAGAAGAACTTTAGTATTTAGCATC-CACCATCAATAAAGAATCTATTGGTGGAATGTGCTTGCTCTGCAGTGgaggttggcaca-ccgtgaccagcaggccactactggcccactgcctgcttttgtaaatagcgtgctattggaacacggctatgcctgtttgtctctgtgtcatctgtggctgcttgtctgctgcaggggcaga--tgagtagttattttggaggccacctaccctgcaaagtcaaaaatatttcctatctagccttttgcagGGAGCTT-CTAACACCT----- i canFam3.chr26 I 157 C 0 s dasNov3.JH568189 865158 296 - 1116856 AAAATAAGGAACCCTAGTATTTTGCATCTTCCTATCAATGAAGAGTCTATTGATGGAGTGTGCTTAA--TACAGTAg-ggttagcaaa-caagaggtggcaggacaaattacggcccctgcctgcttttgaaaatgatgttttgttagagcacagccatgcctatttctagacatactgtctatagctgattttgtgctctactggcagaattgaatagttatcac-gagaccatctggcctgcaaggtcaaaaatattggctgtctggtcctttacagaaagtttaccaaGATCTACTCT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124821501 1079 + 151834684 I a score=215919.000000 s hg38.chr12_KI270834v1_alt 96937 14 + 119498 AGACTCT---AATGGAC s panTro5.chr12 127382559 14 + 137163284 AGACTCT---AATGGAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732863 14 + 135337776 AGACTCT---AATGGAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246407 14 - 8369578 AGACTCT---AATGGAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904619 14 + 106955855 AGACTCT---AATGGAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019153 14 + 133663169 AGACTCT---AATGGAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128267245 14 + 137757926 AGACTCT---AATGGAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665920 14 - 16319837 AGACTCT---AATGGAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289946 14 + 20526591 AGACTCT---AATGGAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261144 14 + 128539186 AGACTCT---AATGGAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612613 14 + 6255621 AGACTCT---AATGGAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638778 14 - 8658521 AGACCCT---AACGGAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842927 14 + 124281992 AGACCGT---AATGGAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485481 14 - 9212255 AGACCCT---AATGGAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2904316 14 + 4466143 AGACCCT---AATAGAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1607251 14 + 5364348 AGACCCT---AATGGAC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9490224 14 - 31815103 AGACTAT---AATGGAC i micMur3.chr21 C 0 I 261 s proCoq1.NW_012154285v1 6744091 14 - 9870158 AGACTAT---AATGGAC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4329671 14 + 7922563 AGACTAT---AATGGAC i otoGar3.GL873618 I 294 C 0 s canFam3.chr26 33178501 14 - 38964690 AGACTAT---ACCAGGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 865454 17 - 1116856 AGACCATACCAAGAGAC i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124821501 1079 + 151834684 I a score=17290.000000 s hg38.chr12_KI270834v1_alt 96951 1 + 119498 A s panTro5.chr12 127382573 1 + 137163284 A i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732877 1 + 135337776 A i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246421 1 - 8369578 A i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904633 1 + 106955855 A i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019167 1 + 133663169 A i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128267259 1 + 137757926 A i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665934 1 - 16319837 A i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289960 1 + 20526591 A i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261158 1 + 128539186 A i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612627 1 + 6255621 A i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638792 1 - 8658521 A i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842941 1 + 124281992 A i calJac3.chr9 C 0 I 2 s saiBol1.JH378194 485495 1 - 9212255 A i saiBol1.JH378194 C 0 I 2 s cebCap1.NW_016107484v1 2904330 1 + 4466143 A i cebCap1.NW_016107484v1 C 0 I 2 s aotNan1.NW_018491581v1 1607265 1 + 5364348 A i aotNan1.NW_018491581v1 C 0 I 2 s proCoq1.NW_012154285v1 6744105 1 - 9870158 A i proCoq1.NW_012154285v1 C 0 I 123 s otoGar3.GL873618 4329685 1 + 7922563 A i otoGar3.GL873618 C 0 I 4 s canFam3.chr26 33178515 1 - 38964690 A i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 865471 1 - 1116856 A i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9490238 261 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I a score=375498.000000 s hg38.chr12_KI270834v1_alt 96952 38 + 119498 ----CAAATGCCATGGAGTCAGGCAAACAACCTGCCTTCAGT s panTro5.chr12 127382574 38 + 137163284 ----CAAATGCCATGGAGTCAGGCAAACAACCTGCCTTCGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732878 38 + 135337776 ----CAAATGCCATGGAGTCAGGCAAACAACCTGCCTTCGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246422 38 - 8369578 ----CAAATGCCATGGAGTCAGGCAAACAACCTGCCTTCAGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904634 38 + 106955855 ----CGAATGCCATGGAGTCAGGCAAACAACCTACCTTCAGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019168 38 + 133663169 ----CGAATGCCATGGAGTCAGGCAAACAACCTGCCTTCGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128267260 38 + 137757926 ----CGAATGCCATGGAGTCAGGCAAACAACCTGCCTTCGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665935 38 - 16319837 ----CGAATGCCATGGAATCAGGCAAACAACCTGCCTTCGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289961 38 + 20526591 ----CGAATGCCATGGAGTCAGGCAAACAACCTGCCTTCGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261159 38 + 128539186 ----CAAATGCCGTGGAGTCAGGCAAACAACCTGCCTTCGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612628 38 + 6255621 ----CGAATGCCATGGAGTCAGGCAAACAACCTGCCTTCGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638793 38 - 8658521 ----CGAATGCCATGGAGTCAGGCAAACAACCTGCCTTCGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842944 38 + 124281992 ----CACGCACCCTAGAGTCAGGCAAACGGCCCGCCTTTGGT i calJac3.chr9 I 2 C 0 s saiBol1.JH378194 485498 38 - 9212255 ----CACGCACACTGGAGTCAGGCAGATAGCCCGCCTTCGGT i saiBol1.JH378194 I 2 C 0 s cebCap1.NW_016107484v1 2904333 38 + 4466143 ----CACGCACACTGGAGTCAGGCAAACAGCCCGCCTTCAGT i cebCap1.NW_016107484v1 I 2 C 0 s aotNan1.NW_018491581v1 1607268 38 + 5364348 ----CACACACACTGGAGTCAGGCAAACAGCCCGCCTTCGGT i aotNan1.NW_018491581v1 I 2 C 0 s otoGar3.GL873618 4329690 34 + 7922563 ----CTTACACTCTGG-GTCAGGCAACCAGCCGACCTCC--- i otoGar3.GL873618 I 4 C 0 s canFam3.chr26 33178516 35 - 38964690 -------AGAACTCGCACTTAGGCAAACGACCTGTTTTCCAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 865472 41 - 1116856 AGAACTTGCACTTTG-AGTCAGGAAAGCAACGAGCTCTTCAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9490238 261 - 31815103 I e mm10.chr5 124821501 1079 + 151834684 I e proCoq1.NW_012154285v1 6744106 123 - 9870158 I a score=660380.000000 s hg38.chr12_KI270834v1_alt 96990 66 + 119498 GGAGAGGGCTG-------CCCCTGCTGTACTGCCCCTCACTGGCTTTT----C------------CTCT-------TCCCAGGTTGGTGTGATTTT- s panTro5.chr12 127382612 66 + 137163284 GGAGAGGGCGG-------CCCCTGCTGTACTGCCCCTCACTGGCTTTT----C------------CTCT-------TCCCAGGTTGGTGTGATTTT- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732916 66 + 135337776 GGAGAGGGCGG-------CCCCTGCTGTACTGCCCCTCACTGGCTTTT----C------------CTCT-------TCCCAGGTTGGTGTGATTTT- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246460 66 - 8369578 GGAGAGGGCGG-------CCCCTGCTGTACTGCCTCTCACTGGCTTTT----C------------CTCT-------TCCCAGGTTGGTGTGATTTT- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904672 66 + 106955855 GGAGAGGGCGG-------CCCCTACTGTACTGCCCCTCACTGGCTTTT----C------------CTCT-------TCCCAGGATGGTGTGATTAC- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019206 73 + 133663169 TGAGAGGGTGGCTCTGAGCCCCAACTGTACTGCCCCTCGCTGGCTTTT----C------------CTTT-------TCCCAGGACGGTGTGATTTT- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128267298 73 + 137757926 TGAGAGGGTGGCTCTGAGCCCCAACTGTACTGCCCCTCGCTGGCTTTT----C------------CTTT-------TCCCAGGACGGTGTGATTTT- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10665973 73 - 16319837 TGAGAGGGTGGCTCTGAGCCCCAACTGTACTGCCCCTCGCTGGCTTTT----C------------CTTT-------TCCCAGGACGGTGTGATTTT- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12289999 73 + 20526591 TGAGAGGGTGGCTCTGATCCCCAACTGTACTGCCCCTCGCTGGCTTTT----C------------CTCT-------TCCCAGGATGGTGTGATTTT- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261197 73 + 128539186 TGAGAGGGTGGCTCTGAGCCCCAACTGTACTGCCTGTCACTGGCTTTT----C------------CTCT-------TCCCAGGACGGTGTGATTTT- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612666 73 + 6255621 TGAGAGGGTGGCTCTGATCCCCAACTGTACTGCCCCTCGCTGGCTTTT----C------------CTCT-------TCCCAGGATGGTGTGATTTT- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638831 73 - 8658521 TGAGAGGGTGGCTCTGAGCCCCAACTGTACTGCCCCTCACTGGCTTTT----C------------CTCT-------TCCCAGGACGATGTGATTTT- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114842982 73 + 124281992 TGAGAGGGTGGCTCTGTGTCCCTACTGTACCAGCCCTCACTGGCTTTT----C------------CTCT-------TCCCAGGATGGTGTGATTGT- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485536 73 - 9212255 TGAGAGGGTGGCTCTGTGTCCCTGCTGTACCAGCCCTCACTGGCTTTT----C------------CTCT-------TCCCAGGACGGTGTGATTGT- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2904371 73 + 4466143 TGAGAGTGTGGCTCTGTGTCCCTTCTGTACCAGCCCTCACTGGCTTTT----C------------CTCT-------TCCCAGGACGGTGTGATTGT- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1607306 72 + 5364348 TGAGAGGGTGGCTCTGTGTCCC-ACTGTACCAGCCCTCACTGGCTTTT----C------------CTCT-------TCCCAGGACGCTGTGATCGT- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4329724 78 + 7922563 -GAGAAGCTGGCTCTGTGCCCTTTCTAT------CCTCACTTGATTTT----CCACCCTACTCCTCTCT-------TCTCAGGAGGGTATGATGAG- i otoGar3.GL873618 C 0 I 4 s mm10.chr5 124822580 58 + 151834684 GGAGAGGGTAGCTCC-TGCTCTGATTGCACCCCCACCC--------------C------------CACT-------TAC--GAAACATGTGGTT--- i mm10.chr5 I 1079 C 0 s canFam3.chr26 33178551 84 - 38964690 AGAGAAAGCAGCTCTGGACTTCTATCATACTGTCCTCCAGTCGCCTTTGGACC------------CTGTGCTGTGCTTCCAGGCAGGTGGGGTGGG- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 865513 57 - 1116856 TGAGAAGGTGGCTCTATTCCTCTATTGTACTG---------------T----C------------CT---------TCCCAGGAGAGTGCAGTAAGT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9490238 261 - 31815103 I e proCoq1.NW_012154285v1 6744106 123 - 9870158 I a score=315418.000000 s hg38.chr12_KI270834v1_alt 97056 24 + 119498 ACCTCCTGTAGACATGGCCATTTC s panTro5.chr12 127382678 24 + 137163284 ACCTCCTGTAGACACGGCCATTTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125732982 24 + 135337776 ACCTCCTGTAGACACGGCCATTTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246526 24 - 8369578 ACCTCCTGTAGACACGGCCATTTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904738 24 + 106955855 ACCTCCTGTAGACACGGCCACTTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019279 24 + 133663169 ACCTCCTGTAGACACAGCCATTTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128267371 24 + 137757926 ACCTCCTGTAGACACAGCCATTTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666046 24 - 16319837 ACCTCCTGTAGACACAGCCATTTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290072 24 + 20526591 ACCTCCTGTAGACACAGCCATTTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261270 24 + 128539186 ACTTCCTGTAGACACAGCCATTTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612739 24 + 6255621 ACCTCCTGTAGACACAGCCATTTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638904 24 - 8658521 ACCTCCTGTAGACACAGCCATTTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843055 24 + 124281992 GCCTCCTGTAGTCACGGCCATTTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485609 24 - 9212255 ACCTCCTGCAGTCACGGCCATTTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2904444 24 + 4466143 GCCTCCTGTAGTCACAGCCATTTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1607378 24 + 5364348 ACCTCCTGTAGTCACGGCCATTTC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6744229 24 - 9870158 ACCTCCTGTAGACATGGCCATTTC i proCoq1.NW_012154285v1 I 123 I 241 s otoGar3.GL873618 4329806 24 + 7922563 TCCTTCTGTAGACATGGCCATTTC i otoGar3.GL873618 I 4 C 0 s mm10.chr5 124822638 20 + 151834684 ----CCTGTTGATGTCACTGCGCC i mm10.chr5 C 0 C 0 s canFam3.chr26 33178635 24 - 38964690 TGCCGCTTTGGGCAGGGCTGCTGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 865570 18 - 1116856 ------GCCAGAAATGACCATTAC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9490238 261 - 31815103 I a score=82619.000000 s hg38.chr12_KI270834v1_alt 97080 7 + 119498 CGTTACA---- s panTro5.chr12 127382702 7 + 137163284 CGTTACA---- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733006 7 + 135337776 CGTTACA---- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246550 7 - 8369578 CGTTACA---- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904762 7 + 106955855 CGTTACA---- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019303 7 + 133663169 CGTTACA---- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128267395 7 + 137757926 CGTTACA---- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666070 7 - 16319837 CGTTACA---- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290096 7 + 20526591 CGTTACA---- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261294 7 + 128539186 CGTTACA---- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612763 7 + 6255621 CGTTACA---- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638928 7 - 8658521 CGTTACA---- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843079 7 + 124281992 CGTTACA---- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485633 7 - 9212255 CGTTACA---- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2904468 7 + 4466143 CGTTACA---- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1607402 7 + 5364348 CGTTACA---- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4329830 7 + 7922563 AGTTGCA---- i otoGar3.GL873618 C 0 I 106 s mm10.chr5 124822658 7 + 151834684 AGGCACA---- i mm10.chr5 C 0 C 0 s canFam3.chr26 33178659 7 - 38964690 AGATGCA---- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 865588 7 - 1116856 ----ACATACG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9490238 261 - 31815103 I e proCoq1.NW_012154285v1 6744253 241 - 9870158 I a score=583341.000000 s hg38.chr12_KI270834v1_alt 97087 62 + 119498 ----TACAGGAGCATG--------TCACTACAGACTG--------GGGCATG------------ACCTAGG-----------------------AACTGAGCTCATCTCTCTTGAAC s panTro5.chr12 127382709 62 + 137163284 ----TACAGGAGCATG--------TCACTACAGACTG--------GGGCATG------------ACCTAGG-----------------------AACTGAGCTCATCTTTCTTGCAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733013 62 + 135337776 ----TACAGGAGCATG--------TCACTACAGACTG--------GGGCATG------------ACCTAGG-----------------------AACTGAGCTCATCTTTCTTGCAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246557 62 - 8369578 ----TACAGGAGCACG--------TCACTACAGACTG--------GGGCATG------------ACCTAGG-----------------------AACTGAGCTCATCTTTCTTGCAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904769 62 + 106955855 ----TACAGGAGCATG--------TCACTACAGACTG--------GGGCATG------------ACCTAGG-----------------------AACTGAGCTCATCTTTCTTGCAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019310 62 + 133663169 ----TACAGGAGCATG--------TCACTACAGACTG--------GGGCATG------------ACCTAGG-----------------------AACTGAGCTTATCTTTTGTGCAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128267402 62 + 137757926 ----TACAGGAGCATG--------TCACTACAGACTG--------GGGCATG------------ACCTAGG-----------------------AACTGAGCTTATCTTTTGTGCAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666077 62 - 16319837 ----TACAGGAGCATG--------TCACTACAGACTG--------GGGCATG------------ACCTAGG-----------------------AACTGAGCTTATCTTTTGTGCAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290103 62 + 20526591 ----TACAGGAGCATG--------TCTCTACAGACTG--------GGGCATG------------ACCTAGG-----------------------AACTGAGCTTATCTTTTGTGCAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261301 62 + 128539186 ----TACAGGAGCATG--------TCACTACAGACTG--------GAGCATG------------ACCTAGG-----------------------AACTGAGCTTATCTTTTTTGCAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612770 62 + 6255621 ----TATAGGAGCATG--------TCACTACAGACTG--------GGGCATG------------ACCTAGG-----------------------AACTGAGCTTATCTTTTGTGCAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638935 62 - 8658521 ----TACAGGAGCATG--------TCACTACAGACTG--------GGGCATG------------ACCTAGG-----------------------AACTGAGCTTATCTTTTTTGCAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843086 66 + 124281992 ----T-TAGGAGCATG--------TCACTGCAGACTGCA---CTTGGGCATA------------ACCTAGG-----------------------AGTTGAGCTCATGTTTTCTGCAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485640 67 - 9212255 ----TACAGGAGCATG--------TCACTACAGACTGCA---CTTGGGCATG------------ACCTAGG-----------------------AGTTGAGCTCATGTTTTCTGCAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2904475 66 + 4466143 ----TACAGGAGCATG--------TCACTGCAGACTGCA---CTTGGGCATG------------ACCT-GG-----------------------AGTTGAGCTCATGTTTTCTGCAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1607409 67 + 5364348 ----TACAGGAGCATG--------TCACTGCGGACTGCA---CTTGGGCATG------------ACCTAGG-----------------------AGTTGAGCTCATGTTTTCTGCAC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4329943 113 + 7922563 ----tgcagtaacatgatcatggctcactgcagccttgaattcctgggcttaagagattctcccacctcggcctctcaaagtgctggggctacCAGCCAAGCCCATCTTTTTTGCAT i otoGar3.GL873618 I 106 C 0 s mm10.chr5 124822665 36 + 151834684 ----CACAGGTGTCCG--------TCACTACAGGCTG---CCCTTTGGCAC------------------------------------------------------------------ i mm10.chr5 C 0 C 0 s canFam3.chr26 33178666 68 - 38964690 ----CACGAGTGAGCG--------GCACCACAGGCCA--GTTGGTGGGCTCC------------AGGTGCA-----------------------AACTGAGCCCTTGGTGTCTGTCC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 865595 73 - 1116856 AACAAGTGGTGGTTTG--------TCACTGCAGACTG-TGCTTTAGGGCATG------------ACCAATA-----------------------AATACAGCCCATATTTTTTATAC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9490238 261 - 31815103 I e proCoq1.NW_012154285v1 6744253 241 - 9870158 I a score=108580.000000 s hg38.chr12_KI270834v1_alt 97149 8 + 119498 TTAGATAT s panTro5.chr12 127382771 8 + 137163284 TTAGATAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733075 8 + 135337776 TTAGATAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246619 8 - 8369578 TTAGATAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904831 8 + 106955855 TTAGATAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019372 8 + 133663169 TTAGATAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128267464 8 + 137757926 TTAGATAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666139 8 - 16319837 TTAGATAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290165 8 + 20526591 TTAGATAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261363 8 + 128539186 TTAGATAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612832 8 + 6255621 TTAGATAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4638997 8 - 8658521 TTAGATAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843152 8 + 124281992 TTAGATAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485707 8 - 9212255 TTAGATAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2904541 8 + 4466143 TTAGATGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1607476 8 + 5364348 TTAGATAT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6744494 8 - 9870158 ttAGATAT i proCoq1.NW_012154285v1 I 241 C 0 s otoGar3.GL873618 4330056 8 + 7922563 TTAGATAT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124822701 8 + 151834684 CTGGCCAG i mm10.chr5 C 0 C 0 s canFam3.chr26 33178734 8 - 38964690 CTAGATGT i canFam3.chr26 C 0 I 18 s dasNov3.JH568189 865668 8 - 1116856 CCAGCTAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9490238 261 - 31815103 I a score=490606.000000 s hg38.chr12_KI270834v1_alt 97157 34 + 119498 TCATGGACATTAG-----GTGCAAAGAGGGG---TAAATGCA s panTro5.chr12 127382779 34 + 137163284 TCATGGACATTAG-----GTGCAAAGAGGGG---TAAATGCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733083 34 + 135337776 TCATGGACATTAG-----GTGCAAAGAGGGG---TAAATGCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246627 34 - 8369578 TCATGGACATTAG-----GTGCAAAGAGGGG---TAAATGCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904839 34 + 106955855 TCATGGACATTAG-----TTGCAAAGAGGGC---TAAATGCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019380 34 + 133663169 TCATGGACATGGG-----GTGCAGAGAGGGC---TAAATGCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128267472 34 + 137757926 TCATGGACATGGG-----GTGCAGAGAGGGC---TAAATGCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666147 34 - 16319837 TCATGGACATGGG-----GTGCAGAGAGGGC---TAAATGCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290173 34 + 20526591 TCATGGACATGGG-----GTGCAGAGAGGGT---TAAATGCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261371 34 + 128539186 TCATGGACATGGG-----GTGCAGAGAGGGC---TAAATGCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612840 34 + 6255621 TCATGGACATGGG-----GTGCAGAGAGGGC---TAAATGCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4639005 34 - 8658521 TCATGGACATTGG-----GTGCAGAGAGGGC---TAAATGCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843160 22 + 124281992 TTGTGGACATTAG-----GTGCAAAG---------------A i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485715 34 - 9212255 TTGTGGACATTAG-----GTGCAAAGAGGGC---TAAATGCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2904549 34 + 4466143 TTGTGGACATGAG-----GTGCAAAGAGGGC---TAAATGCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1607484 34 + 5364348 TTGTGGACATTAG-----GTGCAAAGAGGGC---TAAATGCA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9490499 34 - 31815103 TCATGGACATTAG-----GTGCAAAGAGGGC---TAAATGCA i micMur3.chr21 I 261 I 82 s proCoq1.NW_012154285v1 6744502 34 - 9870158 TCATGGACATTAG-----GCGCAAAGAGGGC---TAAATGCA i proCoq1.NW_012154285v1 C 0 I 90 s otoGar3.GL873618 4330064 34 + 7922563 TCATGGACATTAG-----GTCCAAAGAGAGC---TAACTGCA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124822709 37 + 151834684 CCATGGCCATCAG-----GTGCAAAAACAACCCTCAAGTGCA i mm10.chr5 C 0 I 3 s canFam3.chr26 33178760 39 - 38964690 CCATAGACGTGGACAACTGTGCAGCAGAGAC---TGAGTGCC i canFam3.chr26 I 18 C 0 s dasNov3.JH568189 865676 34 - 1116856 TCATGGGCATTAA-----ATACCAGGAAAAC---TAAATGCA i dasNov3.JH568189 C 0 C 0 a score=680932.000000 s hg38.chr12_KI270834v1_alt 97191 69 + 119498 GCCATA--CAGTTCGAG----TGTTTC-----A---TTTATCTTACGTTTAAGCACAGTGTGCATAAGAAACTCAGT--TTTTTA s panTro5.chr12 127382813 69 + 137163284 GCCATA--CAGTTCGAG----TGTTTC-----A---TTTATCTTACGTTTAAGCACAGTGTGCGTAAGAAACTCAGT--TTTTTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733117 69 + 135337776 GCCATA--CAGTTCGAG----TGTTTC-----A---TTTATCTTACGTTTAAGCACAGTGTGCGTAAGAAATTCAGT--TTTTAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246661 69 - 8369578 GCCATA--CAGTTTGAG----TGTTTC-----A---TTTATCTTACGTTTAAGCACAGTGTGCGTAAGAAACTCAGT--TTTTTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904873 69 + 106955855 GCCATA--CAGTTTGAG----TGTTTC-----A---TTTCTCTTACATTTAAGCACAGTGTGCATAAGAAACTCAGT--TTTTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019414 69 + 133663169 GCCATA--CACTTTGAG----TGTTTC-----A---TTTCTCTTACATTTAAGCACAGCATGCGTATGAAACTCAGG--TTTTTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128267506 69 + 137757926 GCCATA--CACTTTGAG----TGTTTC-----A---TTTCTCTTACATTTAAGCACAGCATGCGTACGAAACTCAGG--TTTTTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666181 69 - 16319837 GCCATA--CACTTTGAG----TGTTTC-----A---TTTCTCTTACATTTAAGCACAGCATGCGTACGAAACTCAGG--TTTTTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290207 69 + 20526591 GCCATA--CACTTTGAG----TGTTTC-----A---TTTCTCTTACATTTAAGCACAGCGTGCGTACGAAACTCAGG--TTTTTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261405 69 + 128539186 GCCATA--CACTTTGAG----TGTTTC-----A---TTTCTCTTACATTTAAGCACAGTGTGCGTAAGAAACTCAGG--TTTTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612874 69 + 6255621 GCCATA--CACTTTGAG----TGTTTC-----A---TTTCTCTTACATTTAAGCACAGCGTGCGTACGAAACTCAGG--TTTTTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4639039 71 - 8658521 GCCATA--CAGTTTGAG----TGTTTC-----A---TTTCTCTTACATTTAAGCACAGTGTGCGTAAGAAACTCAGGGTTTTTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843182 73 + 124281992 GCCATG--CAGTTTGAG----TGTTTCATTTTA---TTTCACTTACATTCAAGCACAGTGGGCATAAGAAACTCAG---TTTTTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485749 76 - 9212255 GCCATACCCAGTTTGAG----TGTTTCATTTTA---TTTCACTTACATTTAAGCACAGTGGGCTTAAGAAACTCAGT--TTTTTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2904583 76 + 4466143 CCCATACCCAGTTTGAG----TGTTTCATTTTA---TTTCACTTACATTTAAGCACAGTGGGCATAAGAAACTCAGT--TTTTTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1607518 74 + 5364348 GCCATA--CAGTTTGAG----TGTTTCATTTTA---TTTCACTTACATTGAAGCACAGTGGGCATAAGAAACTCAGT--TTTTTA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4330098 70 + 7922563 ----TG--CACTTTGAG----TGTTTTGTTACA---TTTCTATTAAATTTAAGTACATTGTATGTAAGCAACTCAGG--tttttt i otoGar3.GL873618 C 0 I 172 s mm10.chr5 124822749 70 + 151834684 GCTTAG--CGATGTGGGCTTTCGCTTC-----A---TTTTCCTTGGACTTGAGTGGGCAGTGTGCGAGGGCCTTGGT--TCT--- i mm10.chr5 I 3 C 0 s canFam3.chr26 33178799 66 - 38964690 ACCGTG--CTGTCTG-G----AATTTC-----AGTTCTTCTCTCATGTTTAAGC---TTGTGCATAGGAAACACCAC--TTTC-- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 865710 69 - 1116856 ACCCTG--CAGTTTGTA----TGTTTCATATCA---TTTCTCTACAGTATAAGC-TTTTGTGCTTAAGAAACT--GT--TTTT-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9490533 82 - 31815103 I e proCoq1.NW_012154285v1 6744536 90 - 9870158 I a score=-34376.000000 s hg38.chr12_KI270834v1_alt 97260 15 + 119498 AAAATGAATT--TTAAG s panTro5.chr12 127382882 15 + 137163284 AAAATGAATT--TTAAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733186 15 + 135337776 AAAATGAATT--TTAAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246730 15 - 8369578 AAAATGAATT--TTAAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904942 15 + 106955855 AAAGTGAATT--TTAAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019483 3 + 133663169 --------------AAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128267575 3 + 137757926 --------------AAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666250 3 - 16319837 --------------AAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290276 3 + 20526591 --------------AAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261474 3 + 128539186 --------------AAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612943 3 + 6255621 --------------AAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4639110 3 - 8658521 --------------AAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843255 13 + 124281992 -AAGTG-ATT--TTAAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485825 14 - 9212255 -AAGTGAATT--TTAAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2904659 14 + 4466143 -AAGTGAATT--TTAAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1607592 14 + 5364348 -AAGTGAATT--TTAGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4330340 15 + 7922563 aaaatgaaaa--ataat i otoGar3.GL873618 I 172 I 9 s mm10.chr5 124822819 1 + 151834684 ----------------G i mm10.chr5 C 0 C 0 s canFam3.chr26 33178865 14 - 38964690 AAAGTGACTTGACT--- i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 865779 13 - 1116856 -AAATGAATTTATT--- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9490533 82 - 31815103 I e proCoq1.NW_012154285v1 6744536 90 - 9870158 I a score=21242.000000 s hg38.chr12_KI270834v1_alt 97275 2 + 119498 --AA s panTro5.chr12 127382897 2 + 137163284 --AA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733201 2 + 135337776 --AA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246745 2 - 8369578 --AA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904957 2 + 106955855 --AA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019486 2 + 133663169 --AA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128267578 2 + 137757926 --AA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666253 2 - 16319837 --AA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290279 2 + 20526591 --AA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261477 2 + 128539186 --AA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612946 2 + 6255621 --AA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4639113 2 - 8658521 --AA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843268 2 + 124281992 --AA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485839 2 - 9212255 --AA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2904673 2 + 4466143 --AA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1607606 2 + 5364348 --AA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9490615 2 - 31815103 --AA i micMur3.chr21 I 82 C 0 s otoGar3.GL873618 4330364 2 + 7922563 --aa i otoGar3.GL873618 I 9 C 0 s mm10.chr5 124822820 2 + 151834684 --AA i mm10.chr5 C 0 I 1 s dasNov3.JH568189 865792 2 - 1116856 TT-- i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6744536 90 - 9870158 I e canFam3.chr26 33178879 2 - 38964690 I a score=4784655.000000 s hg38.chr12_KI270834v1_alt 97277 292 + 119498 ATCAATACTCATCTGATGTTTCCCTCCAGGGCTGTTTGAGAGGCACAAGCTACTCTTTTCTTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAACTAGATTTCTTTTTAAAAGGTAATGAATTTGCCTAGCTTCATTCCTCCCA-TCTCCTT--G-CCCACAT-GATACATGTATATAAGTTTGTCTGTTGAAACAAACA--ATAACAAAAATTCTCCTTAAAACTTGGCTTCCAACAGCACTGCATTTTTCACTATTCCAGTTGATCATTCCAGCCT s panTro5.chr12 127382899 290 + 137163284 ATCAATACTCATCTGATGTTTCCCTCCAGGGCTGTTTGAGAGGCACAAGCTACTCTTTTCTTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAACTAGATTTCTTTTTAAAAGGTAATGAATTTGCCTAGCTTCATTCCTCCCA-TCTCCTT--G-CCCACAT-GATACATGTATAT--GTTTGTCTATTGAAACAAACA--ATAACAAAAATTTTCCTTAAAACTTGGCTTCCAACAGCACTGCATTTTTCACTATTTCAGTTGATCATTCCAGCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733203 290 + 135337776 ATCAATACTCATCTGATGTTTCCCTCCAGGGCTGTTTGAGAGGCACAAGCTACTCTTTTCTTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAACTAGATTTCTTTTTAAAAGGTAATGAATTTGCCTAGCTTCATTCCTCCCA-TCTCCTT--G-CCCACAT-GATACATGTATAT--GTTTGTCTATTGAAACAAACA--ATAACAAAAATTCTCCTTAAAACTTGGCTTCCAACAGCACTGCATTTTTCACTATTTCAGTTGATCATTCCAGCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8246747 291 - 8369578 ATCAATACTCATCTGATGTTTCCCTCCAGGGCTGTTTGAGAGGCACAAGCTACTCTTTTCTTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAACTAGATTTCTTTTTAAAAGGTAATGAATTTGCCTAGCTTCATTCCTCCCA-TCTCCTT--G-CCCACAT-GATACATGTGTATAAGTTTGTCTATTGAAACAAACA--ATAACAAAAATTCTCCTTAAAACTTGGCTTCCAACAGCA-TGCATTTTTCACTATTCCAGTTGATCATTCCAGCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97904959 292 + 106955855 ATCAATACGCATCTGATGTTTCCCTCCAGGGCTGTTTGAGAGGCACAAGCTACTCTTTTCTTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAATTAGATTTCTTTTTAAAAGGTAATGAATTTGCCTAGCTTCATTCCTCCCA-TCTCCTT--G-CCCACAT-GATACATGTATGTAAGTTTGTCCATTAAAACAAACA--ATAACAAAAATTCTCCTTAAAACTTGGCTTCCAACAGCACTGCATTTTTCACTATTCCAGTTGATCATTCCAGCCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019488 292 + 133663169 ATCAATGCTCGTCTGATGTTTCCCTCCAGGGCTGTTTGAGAGGCACAAGCTACTCTTTTCTTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAATTAGATTTCTTTCTAAAAGGTAATGAATTTGCCTAGCTTCATTCCTCCCA-TCTCCTT--G-CCCACAC-GATACGTGTATATAAGTTTGTCCATTAAAACAGACA--ATCACAAAAATTCGCCTTAAAACTTGGCTCCCAACAGCACTGCATTTTTCACTATTCCAGTTGATCATTCCAGCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128267580 292 + 137757926 ATCAATGCTCGTCTGATGTTTCCCTCCAGGGCTGTTTGAGAGGCACAAGCTACTCTTTTCTTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAATTAGATTTCTTTCTAAAAGGTAATGAATTTGCCTAGCTTCATTCCTCCCA-TCTCCTT--G-CCCACAC-GATACGTGTATATAAGTTTGTCCATTAAAACAGACA--ATCACAAAAATTCGCCTTAAAACTTGGCTCCCAACAGCACTGCATTTTTCACTATTCCAGTTGATCATTCCAGCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666255 292 - 16319837 ATCAATGCTCGTCTGATGTTTCCCTCCAGGGCTGTTTGAGAGGCACAAGCTACTCTTTTCTTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAATTAGATTTCTTTCTAAAAGGTAATGAATTTGCCTAGCTTCATTCCTCCCA-TCTCCTT--G-CCCACAC-GATACGTGTATATAAGTTTGTCCATTAAAACAGACA--ATCACAAAAATTCGCCTTAAAACTTGGCTCCCAACTGCACTGCATTTTTCACTATTCCAGTTGATCATTCCAGCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290281 292 + 20526591 ATCAATACTCGTCTGATGTTTCCCTCCAGGGCTGTTTGAGAGGCACAAGCTACTCTTTTCTTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAATTAGATTTCTTTCTAAAAGGTAATGAATTTGCCTAGCTTCATTCCTCCCA-TCTCCTT--G-CCCACAC-GATACGTGTATATAAGTTTGTCCATTAAAACAGACA--ATCACAAAAATTCGCCTTAAAACTTGACTCCCAACAGCACTGCATTTTTCACTATTCCAGTTGATCATTCCAGCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261479 292 + 128539186 ATCGATGCTCGTCTGATGTTTCCCTCCAGGGCTGTTTGAGAGGCACAAGCTACTCTTTTCTTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAATTAGATTTCTTTCTAAAAGGTAATGAATTTGCCTAGCTTCATTCCTCCCA-TCTCCTT--G-CCCACAC-GATACATGTATATAAGTTTGTCCATTAAAACAAACA--ATCACAAAAATTCGCCTTAAAACTTGGCTCCCAACAGCACTGCATTTTTCACTATTCCAGTTGATCATTCCAGCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 612948 292 + 6255621 ATCAATGCTCGTCTGATGTTTCCCTCCAGGGCTGTTTGAGAGGCACAAGCTACTCTTTTCTTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAATTAGATTTCTTTCTAAAAGGTAATGAATTTGCCTAGCTTCATTCCTCCCA-TCTCCTT--G-CCCACAC-GATATGTGTATATAAGTTTGTCCATTAAAACAGACA--ATCACAAAAATTCGCCTTAAAACTTGGCTCCCAACAGCACTGCATTTTTCACTATTCCAGTTGATCATTCCGGCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4639115 288 - 8658521 ATCAATGCTCGTCTGATGTTCCCCTCCAGGGCTGTTTGAAAGGCACAAGCTACTCTTTTCTTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAATTAGATTTCTTTCTAAAAGGTAATGAATTTGCCTGGCTTCATTCCTTCCA-TCTCCTT--G-CCCACAC-GATACGTGTATATAAGTTTGTCCATTAAA----ACA--ATCACAAAAATTTGCCTTAAAACTTGGCTCCCAACAGCACTGCATTTTTCACTATTCCAGTTGATCATTCCAGCCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843270 292 + 124281992 ATCAGTACTCACCTGCTCTTTCCCTCCAGGGCTGCTTGAGAGGCACAAGCTACTCTTTTCCTTTAACATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAACTAGATTTCTTTTTGAAAGGTAATGAATTTGCCTAGCCTCATTCTTCCCG-TCTCCTT--G-CCCACAC-GATACATGTATATAAGTTTGTCCATTAAAACAAACA--AGAACAAAAATTCTCCTTCCAACATGGCTTCCAACAGCCCTGCATTTTTCACTACTCCAGTTGAGCATTCCAGCCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 485841 292 - 9212255 ATCAATACTCACCTGATGTTTCCCTCCAGGGCTGTTTGAGAGGCACAAGCTACTCTTTTCCTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAATTAGATTTCTTTTTAAAAGGTAATGAATCTGCCTAGCCTCATTCCTCCCG-TCTCCTT--G-CCCACAC-GATACATGTATATAAGTTTGTCCATTAAAACAAACA--AGAACAAAAATTCTCCTTAAAACGTGGCTTTCAACAGCACTGCATTTTTCACTATTCCAGTTGAGCATTCCAGCCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2904675 292 + 4466143 ATCAATACTCACCTGATGTTTCCCTCCAGGGCTGTTTGAGAGGCACAAACTACTCTTTTCCTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAATTAGATTTCTTTTTGAAAGGTAATGAATTTGCCTAGCCTCATTCTTCCTG-TCTCCTT--G-CCCACAC-GATACATGTATATAAGTTTGTCCATTAAAACAAACA--AGAACAAAAATTCTCCTTAAAACTTGGCTTCCAACAGCACTGCATTTTTCATTATTCCAGTTGAGCATTCCAGCCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1607608 287 + 5364348 ATCAATACTCACCTGGTGTTTCCCTCCAGGGCTGTTTGAGAGGCACAAGCTGCTCTTTTCCTTTAACATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAATTAGATTTCTTTTTGAAAGGTAATGAATTTGCCTAGCCTCATTCTTCCCG-TCTCCTT--G-CCCACAC-GATACATGTATGTAAGTTTGTCCACT-----AAACA--AGAACAAAAATTCTCCTTAAAACTTGGCTTCCAACAGCACTGCATTTTTCACTATTCCAGTTGAGCATTCCAGCCT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9490617 294 - 31815103 ATCAATACCCATCTGGTGTTTCCCTACAGGGTTGTTTGAGAAGCACAAGCTACTCTTTTCTTTTAATATGACTATCAAGATAGAACAAGCAGAAGGGAGAGTCCCCCAGGAAGAATTAGATTTCTTTTTAAAAGGTAATGGATTTGCCCGATTTTATTCTTCCCAATTTCCTT--GACTTATGT-GGTATGTGTATGTAAGTTTGTTCATTAAAACAACCA--ACAACAAAAATTCTCCGTAAAACTTGGCTTGCGACAGCACTGCCTTATTAAGTGTTCCAGTTGATGATTCCAGCCT i micMur3.chr21 C 0 I 77 s proCoq1.NW_012154285v1 6744626 290 - 9870158 ATCAATACCCATCTGGTGTTTCCCTACAGGGTTGTTTGAGAAGCACAAGCTACTCTTTTCTTTTAATATGACTATCAAGATAGAACAAGCAGAAGGGAGAGTCCCCCAGGAGGAACTAGATTTCTTTTTAAAAGGTAATGGATCTGCCCGATTTTATTCTTCCCAGTTTCCTT--GACTCACAG-GGTACATGAATATAAGTTTGTTCATTAAAACAACCG--ACAGCGAAA----TTCTTACAACTTGGCTTCCAGCAGCACTGCCTCATTAAATGTTTCCGTTGCTGACTCCAGCCT i proCoq1.NW_012154285v1 I 90 C 0 s otoGar3.GL873618 4330366 292 + 7922563 atCAATACCCATCTGGTGTTTCCCTACAGGATTGTTTGAGAGGCACAAGCTACTCTTTTCTTTTAATATGACTATCAAGATAGAACAAGCAGAAGGGAGAGTCCCCCAGGAAGAACTAGATTTCTTTTTAAAAGGTAATGAATTTGTTCG-TTTTAGTCTTCCCAACTTCCTT--AACCTATGT-GGTATACGTGTATAAATTTGTTCCTTAAAACAACCA--ACAGTGAAAATTCTCCTTAAAACTTGGCTTCCAGCGGCACTGCTGTATTAAA-ACTTCAGTTGGTGGTCCCAGCTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124822823 262 + 151834684 CACGGTCTCTGTCT-CCGTCTCTCTGCAGGGCTGTTTGAGAGGCATAAGCTCCTCTTCTCCTTCAACATGACCATCAAGATAGAGCAGGCAGAGGGGAGGGTCCCCCAGGAGGAGTTAGACTTCTTCCTAAAAGGTAATGGGCTTTCTGGCTTTCACCCTCATCC-TATCTGG--G-CACCCAA-GATATGCATGTCCA---TTCACCATAAATGTTACCA--GTAGCAAAATCCC--------------CTTCCAA--GAACTACAGGTT----------ATCTAACAATGCCCACCT i mm10.chr5 I 1 C 0 s canFam3.chr26 33178881 281 - 38964690 ATCAGTGCCCCTCTGATGTTTCCCTCCAGGGTTGTTTGAGAGACACAAGTTACTCTTCTCTTTCAATATGACGATCAAGATAGAACAAGCAGAAGGCAGAGTCCCCCAGGAAGAATTAGATTTCTTCTTAAAAGGTGACAAATGTGCCTCCTTTCATTCTTCCCC-ACTCCCTTGG-CCCACGT-TGCAC------------TTGTTCGTTGAAACAG-CA--TTACCAAAACTTCTCCTTAGAACTTGACTTCTGATGGCGCTGCCATACCAAATATTTCAGTTGGCAGTTCCAGCCT i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 865794 297 - 1116856 ATCAATATCCATCTGGTGTTTCCCTACAGGGCTGTTTGAAAGGCACAAGTTACTCTTTTCTTTCAATATGACTATCAAGATAGAACAAGCAGAAGGGAGAGTCCCCCAAGAAGAATTAGATTTCTTTTTAAAAGGTAATGAATTTGCCTAATTTCACTCTTCCCAACTTCCTT--GACTTACACTGCTACATGTATACAAGTTTATTCATTAAAAGTAACATCACCACCAAAATTTGCATTAAAGTTTGACTTCCAACAGCACAGTTTTATTACATATTTTAATTGACAGTTCCAGCCT i dasNov3.JH568189 C 0 C 0 a score=955911.000000 s hg38.chr12_KI270834v1_alt 97569 78 + 119498 CAGAAATGGCTCTGGTTGAAATCGGAGCAGCCAGCCTCTGTCTCGGGGCCATCCTGAGGCTGGAAGCTGGATGCTGCA s panTro5.chr12 127383189 78 + 137163284 CAGAAATGGCTCTGGTTGAAATCGGAGCAGCCAGCCTCTGTCTCGGGGCCATCCTGAGGCTGGAAGCTGGATGCTGCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733493 78 + 135337776 CAGAAATGGCTCTGGTTGAAATCGGAGCAGCCAGCCTCTGTCTCGGGGCCATCCTGAGGCTGGAAGCTGGATGCTGCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247038 78 - 8369578 CAGAAATGGCTCTGGTTGAAATCGGAGCAGCCAGCCTCTGTCTCGGGGCCATCCTGAGGCTGGAAGCTGGATGCTGCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97905251 78 + 106955855 CAGAAATGGCTCTGGTTGAACTCGGAGCAGCCAGCCTCTGTCTCAGGGCCACCCTGAGGCTGGAAGCTGGATGCTGCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019780 78 + 133663169 CCGAAAAGGCTCTGGTTGAACTCGGAGCAGCCAGCCTCTGTCTCGGGGCCACCCTGAGGCTGGAAGCTGGATGCTACA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128267872 78 + 137757926 CCGAAAAGGCTCTGGTTGAACTCGGAGCAGCCAGCCTCTGTCTCGGGGCCACCCTGAGGCTGGAAGCTGGATGCTACA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666547 78 - 16319837 CCGAAAAGGCTCTGGTTGAACTCGGAGCAGCCAGCCTCTGTCTCGGGGCCACCCTGAGGCTGGAAGCTGGATGCTACA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290573 78 + 20526591 CCAAAAAGGCTCTGGTTGAACTCGGAGCAGCCAGCCTCTGTCTCGGGGCCACCCTGAGGCTGGAAGCTGGATGCTACA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261771 78 + 128539186 CTGAAAAGGCTCTGATTGAACTCGGAGCAGCCAGCCTCTGTCTTGGGGCCACTCTGAGGCTGGAAGCTGGATGCTACA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 613240 78 + 6255621 CTGAAAAGGCTCTGGTTGAACTCGGAGCAGCCAGCCTCTGTCTCGGGGTCACCCTGAGGCTGGAAGCTGGATGCTACA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4639403 78 - 8658521 CAGAAATGGCTCTGGTTGAACTCGGAGCAGCCAGCCTCTGTCTCGGGGCCACCCTGAGGCTGGAAGCTGGATGCTACA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843562 78 + 124281992 CAGAAGTGGCTCTGGTTGAACTCAGAGCAGCCAGCCTCTGTTTCGGGGCCACCCTGAGGCTGGAAGCTGGATGCTGCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 486133 78 - 9212255 CAGAAGTGGTTCTGGTGGAACTCGGAGCAGCCAGCCTCTGGCTCCGGGCCACCCTGAGGCTGGAAGCTCGATGCTGCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2904967 78 + 4466143 CAGAAGTGGTTCTGGTTGAACTCGGAGCAGCCAGCCTCTGTCTCGGGGCCACCCTGAGGCTGGAAGCTGGATGCTGCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1607895 78 + 5364348 CAGAAGTGGTTCTGGTTGAACTTGGAGCAGCCAGCCTCTGTCTCGGGGCCACCCTGAGGCTGGAAGCTGGATGCTGCA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6744916 70 - 9870158 CGGCAGGGGTTCC-GTTGGACTCCGAGCAGCCAGCCTTTGCCTCGGTGCCGCCCTGAGCCTGGGGGCC--ACG----- i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4330658 70 + 7922563 CAGCAGTGGTTCTGGGTGTACTCAGAGCAGCCAGCCTTTGCCTCCGAGCT-CCCTGAGGCTGGATGCC--ATG----- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124823085 42 + 151834684 CAGAAA----------------------------CCTTTG-CAGAGAACTGTGTTGAGACTGGAGGCCTGG------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33179162 71 - 38964690 CAGAAATGGTTCTGGTCTGGCCCGGAGCAGCCAGGTTGCTGCCCACAGGCTCCCTGAGGCTGGAAGCCACA------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 866091 69 - 1116856 CAAAAATGATTCCAGGTTGACTTGGACCAA-CAGGCTTTG-CTCGTGGTTGCCCAGAGGCTGGAAGTCACA------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9490911 77 - 31815103 I a score=1387606.000000 s hg38.chr12_KI270834v1_alt 97647 99 + 119498 CTGAGC-GCCTGGTT-GGTGTCACTGGCGGTGACG-AGGGCAAGCCTGGGCCACTTCCTGTTTCCAGTCTCCTTCTTGAAAAGT-GGACTTTT-CCCAAAAGTG s panTro5.chr12 127383267 99 + 137163284 CTGAGC-GCCTGGTT-GGTGTAACTGGCGGTGACG-AGGGCAAGCCCGGGCCACTTCCTGTTTCCAGTCTCCTTCTTGAGAAGT-GGACTTTT-CCCAAAAGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733571 99 + 135337776 CTGAGC-GCCTGGTT-GGTGTAACTGGCGGTGACG-AGGGCAAGCCCGGGCCACTTCCTGTTTCCAGTCTCCTTCTTGAGAAGT-GGACTTTT-CCCAAAAGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247116 99 - 8369578 CTGAGC-GCCTGGTT-GATGTCACTGGCGGTGACG-AGGGCAAGCCCGGGCCACTTCCTGTTTCCAGTCTCCTTCTTGAGAAGT-GGACTTTT-CCCAAAAGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97905329 99 + 106955855 CTGAGC-GCCTCGTT-GGTATCACTGGCGGTGACG-AGGGCAAGCCCGGGCCACTTCCTCTTTCCAGTCTCCTTCCTGAGAAGC-AGACTTTT-CCCAAAAGTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019858 100 + 133663169 CTGAGC-GCCTAGTT-GGTGTCACTGGCGGTGACG-AGGGCAAGCCCGGGCCATTTCCTCTTTCCAGTCTCCTTCTTGAGAAGT-GGACTTTTCCCCAAAAGTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128267950 100 + 137757926 CTGAGC-GCCTAGTT-GGTGTCACTGGCGGTGACG-AGGGCAAGCCCGGGCCACTTCCTCTTTCCAGTCTCCTTCTTGAGAAGT-GGACTTTTCCCCAAAAGTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666625 100 - 16319837 CTGAGC-GCCTAGTT-GGTGTCACTGGCGGTGACG-AGGGCAAGCCCGGGCCACTTCCTCTTTCCAGTCTCCTTCTTGAGAAGT-GGACTTTTCCCCAAAAGTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290651 100 + 20526591 CTGAGC-GCCTAGTT-GGTGTCACTGGCGGTGACG-AGGGCAAGCCCGGGCCACTTCCTCTTTCCAGTCTCCTTCTTGAGAAGT-GGACTTTTCCCCAAAAGTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261849 99 + 128539186 CTGAGC-ACCTAGTT-GGTGTCACTGGCGGTGACG-AGGGCAAGCCCGGGCCACTTCCTCTTTCCAGTCTCCTTCTTGAGAAGT-GGACTTTT-CCCAAAAGTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 613318 100 + 6255621 CTGAGC-GCCTAGTT-GGTGTCACTGGCGGTGACG-AGGGCAAGCCCGGGCCACTTCCTCTTTCCAGTCTCCTTCTTGAGAAGT-GGACTTTTCCCCAAAAGTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4639481 100 - 8658521 CTGAGC-GCCTAGTT-GGTGTCACTGGCGGTGACG-AGGGCAAGCCCGGGCCACTTCCTCTTTCCAGTCTCCTTCTTGAGAAGT-GGACTTTTCCCCAAAAGTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843640 99 + 124281992 GTGAGC-GCCGGGTT-GGTGTCACTGGCGGTGACG-AGGGCAAGCCCAGGCCACTTCCTCCTTCCAGTCTCCTTCTTGAGAGGT-GGACTTTT-TCCAAAAGTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 486211 99 - 9212255 GTGAGC-GCCAGGTT-GGTGTCACTGGTGGTGACG-AGGGCAAGCCCAGACCACTTCCTCTTTCCACTCTCCTTCTTGAGAAGT-GGACTTTT-TCCAAAAGTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2905045 96 + 4466143 GTGAGC-GCCGGGTT-GGTGTCGCTGGCGGTGACA-AGGGCAAGCCCAGGCCACTTCCTCTTTCCAGTCTC---CTTGAGAAGT-GGACTTTT-TCCAAAAGTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1607973 99 + 5364348 GTGAGC-GCCAGGTT-GGTGTCACTGGCGGTGACG-AGGGCAAGCCCAGGCCACTTCCTCTTTCCAGTCTCCTTCTTGAGAAGT-GGACTTTT-CCCAGAAGTG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9490988 98 - 31815103 CTGAGC-GCCAGCTT-GGGGTCACTGGCGGTGACA-AGGGCCAGCTGGGGCCGCCTTCTCTTGCCGGTCTCCTCCTTGGGAAGT--GGCTTTT-CCCAAGAGTG i micMur3.chr21 I 77 I 70 s proCoq1.NW_012154285v1 6744986 100 - 9870158 CTAAGC-GCCTGTTT-GGGGTCCCTGGGGGTGACA-AGGGCCAGCAGGGGCCGCCTTCTCTTTCCAGCCTCCTCCTTGGGAAGCGGGGCTTTT-CCCAAAAGTG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4330728 95 + 7922563 CTGAGC-ACCTGCTTGGGGGTCACTGGC---AATA-AGAGCCTGTTGGGGCTGCCTTCTCGT-CCAATCT-CTTTTCGGGAAGT-GGATTTTT-CCCCAAAGTA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124823127 80 + 151834684 CTAAGCTGTCAAGCT-GGGCTTACTGGTGACA--------CAAGCCCATGCCTCCTCA-------------CTCCTTGGCGAAG-GGACCTCT-CCCCAGAGCA i mm10.chr5 C 0 C 0 s canFam3.chr26 33179233 98 - 38964690 TTGACCTGCCTGTCT-GGTGTCCCAGGCAGTGGGACAAGGCAAGCC-GTGTATCCCTGTCTGTCCAGTCCCCT-CTGGAGATGC-AGG-TTCT-CCCAGGAGTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 866160 100 - 1116856 CTGAGCTGCCTGGTG-GGCGTTACTGGTAGTAACA-AGGGCAAGCTCATGTCTCCTTCTCTTCCCACACTTCTTCTCAGGAAGA-GAACTTTT-TCTATAAGTG i dasNov3.JH568189 C 0 C 0 a score=187555.000000 s hg38.chr12_KI270834v1_alt 97746 13 + 119498 GGAGAAGTCGAAG s panTro5.chr12 127383366 13 + 137163284 GGAGAAGTCGAAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733670 13 + 135337776 GGAGAAGTCGAAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247215 13 - 8369578 GGAGAAGTCGAAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97905428 13 + 106955855 GGAGAAGTCGAAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019958 13 + 133663169 AGAGAAGTCAAAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128268050 13 + 137757926 AGAGAAGTCAAAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666725 13 - 16319837 AGAGAAGTCAAAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290751 13 + 20526591 AGAGAAGTCAAAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261948 13 + 128539186 AGAGAAGTCAAAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 613418 13 + 6255621 AGAGAAGTCAAAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4639581 13 - 8658521 AGAGAAGTCAAAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843739 13 + 124281992 AGAGAAGTCAAAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 486310 13 - 9212255 AGAGAAGTCAAAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2905141 13 + 4466143 AGAGAAGTCAAAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1608072 13 + 5364348 AGAGGTGTCAAAG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6745086 13 - 9870158 CGGGAAGTCGGAG i proCoq1.NW_012154285v1 C 0 I 41 s otoGar3.GL873618 4330823 13 + 7922563 AAAGAAGTCAAAG i otoGar3.GL873618 C 0 I 2 s mm10.chr5 124823207 13 + 151834684 TGAGGCACGGAAG i mm10.chr5 C 0 C 0 s canFam3.chr26 33179331 13 - 38964690 GGAGAAGTCAAAG i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 866260 13 - 1116856 AGGGAAATTAAAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9491086 70 - 31815103 I a score=389174.000000 s hg38.chr12_KI270834v1_alt 97759 40 + 119498 --CAGAGTTGCTTG-------------CTTTGTGT---------------------TAGTG---GTACAATGGCTGCTT s panTro5.chr12 127383379 40 + 137163284 --CAGAGTTGCTTG-------------CTTTGTGT---------------------TAGTG---GTACAATGGCTGTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733683 40 + 135337776 --CAGAGTTGCTTG-------------CTTTGTGT---------------------TAGTG---GTACAATGGCTGTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247228 40 - 8369578 --CAGAGTTGCTTG-------------CTTTGTGT---------------------TAGTG---CTACAATGGCTGTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97905441 40 + 106955855 --CAGAGTTGCTTG-------------CTTTGTGT---------------------TAGCA---GCACAATGGCTGTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124019971 40 + 133663169 --CAGAGTTGCCTG-------------CTTTGTGT---------------------TGGCA---GCACAACGGCTGTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128268063 40 + 137757926 --CAGAGTTGCCTG-------------CTTTGTGT---------------------TGGCA---GCACAACGGCTGTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666738 40 - 16319837 --CAGAGTTGCCTG-------------CTTTGTGT---------------------TGGCA---GCACAACGGCTGTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290764 40 + 20526591 --CAGAGTTGCCTG-------------CTTTGTGT---------------------TGGCA---GCACAACAGCTGTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119261961 40 + 128539186 --CAGAGTTGCCTG-------------CTTTGTGT---------------------TGGCA---GCACAACGGCTGTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 613431 40 + 6255621 --CAGAGTTGCCTG-------------CTTTGTGT---------------------TGGCA---GCACAACGGCTGTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4639594 40 - 8658521 --CAGAGTTGCCTG-------------CTTTGTGT---------------------TGGCA---GCACAACGGCTGTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843752 40 + 124281992 --CAGAGTTGCTTG-------------CTTTGTGT---------------------AGGCA---GCGCAATGGCTGTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 486323 40 - 9212255 --CAGAGTTGCTTG-------------CTTTGTGT---------------------CAGCA---GCGCAATGGCTGTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2905154 40 + 4466143 --CAGAGTTGCTTG-------------CTTTGTGT---------------------CAGCA---GCGCAATGGCTGTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1608085 39 + 5364348 --CAGAGCTGCTTG-------------C-TTGTGT---------------------CAGCA---GCGCAATGGCTGTCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4330838 31 + 7922563 --CTGAGCTGACTG-------------CTTTG---------------------------------CACAATGGCTGTTG i otoGar3.GL873618 I 2 I 2 s mm10.chr5 124823220 51 + 151834684 ------------TG-------------CTCTGTGTGCATGGTCTGCGCGCTGGGCATGGAG---AACCCGTGGCCGGGC i mm10.chr5 C 0 I 5 s canFam3.chr26 33179346 42 - 38964690 --CTGAGCTGCCCG-------------CTCCA-AT---------------------CGGCATGTGGCTGCCGGCTGTTT i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 866273 55 - 1116856 CACTGAGCTACTTAATTCTCCCAGGATCTTGGAGT---------------------TGGCA---GTCCAATAGCTGGTC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9491086 70 - 31815103 I e proCoq1.NW_012154285v1 6745099 41 - 9870158 I a score=262062.000000 s hg38.chr12_KI270834v1_alt 97799 19 + 119498 ---GCTTCTCTTCTGTTGTGAT s panTro5.chr12 127383419 19 + 137163284 ---GCTTCTCTTCTGTTGTGAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733723 19 + 135337776 ---GCTTCTCTTCTGTTGTGAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247268 19 - 8369578 ---GCTTCTCTTCTGTTGTGAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97905481 19 + 106955855 ---GCTTCTCTTCTGTCGTGAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124020011 19 + 133663169 ---GCTTCTCTTCCGTTGTGAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128268103 19 + 137757926 ---GCTTCTCTTCCGTTGTGAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666778 19 - 16319837 ---GCTTCTCTTCCGTTGTGAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290804 19 + 20526591 ---GCTTCTCTTCCATTGTGAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119262001 19 + 128539186 ---GCTTCTCTTCCGTTGTGAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 613471 19 + 6255621 ---GCTTCTCTTCCGTTGTGAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4639634 19 - 8658521 ---GCTTCTCTTCCGTTGTGAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843792 19 + 124281992 ---GCTTCTCTTCTGTTGTGAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 486363 19 - 9212255 ---GCTTCTCTTCTGTTGTGAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2905194 19 + 4466143 ---GCTTCTCTTCTGTTGTGAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1608124 19 + 5364348 ---GCTTCTCTTCTGTTGTGAT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6745140 14 - 9870158 ---GCTTCTCTCCTGTT----- i proCoq1.NW_012154285v1 I 41 C 0 s otoGar3.GL873618 4330871 19 + 7922563 ---TCTTCTCTGCTATTGTGTA i otoGar3.GL873618 I 2 C 0 s mm10.chr5 124823276 18 + 151834684 ---CCGTCTTCTCC-TTGTGGT i mm10.chr5 I 5 C 0 s canFam3.chr26 33179388 18 - 38964690 ---ACTTCCTTTCT-CTGTGAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 866328 22 - 1116856 ACTTCTTTTCTTCTGTTGTCAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9491086 70 - 31815103 I a score=3040327.000000 s hg38.chr12_KI270834v1_alt 97818 164 + 119498 TAGGAAACATTTCCCTGGAGAAAAGCAAAAGAAAAAAGCCCTGCGCTTGGTTGTCTGACCAAGGATGGGAAGATATCATTCTTTTATCAGAAATGTTTTCAGACAACTTTGGGCAACTTCCTGATGATGTTGAGAATAATCAGACTGTCTGGCAGGAGGTGAGC s panTro5.chr12 127383438 164 + 137163284 TAGGAAACATTTCCCTGGAGAAAAGCAAAAGAAAAAAGCCCTGCGCTTGGTTGTCTGACCAAGGATGGGAAGATATCATTCTTTTATCAGAAATGTTTTCAGACAACTTTGGGCAACTTCCTGATGATGTTGAGAATAATCAGACTGTCTGGCAGGAGGTGAGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733742 164 + 135337776 TAGGAAACATTTCCCTGGAGAAAAGCAAAAGAAAAAAGCCCTGCGCTTGGTTGTCTGACCAAGGATGGGAAGATATCATTCTTTTATCAGAAATGTTTTCAGACAACTTTGGGCAACTTCCTGATGATGTTGAGAATAATCAGACTGTCTGGCAGGAGGTGAGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247287 164 - 8369578 TAGGAAACATTTCCCTGGAGAAAAGCAAAAGAAAAAAGCCCTGCGCTTGGTTGTCTGACCAAGGATGGGAAGATATCATTCTTTTATCGGAAATGTTTTCAGACAACTTTGGGCAACTTCCTGATGATGTTGAGAATAATCAGACTGTCTGGCGGGAGGTGAGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97905500 164 + 106955855 TAGGAAACATTTCCCTGGAGAAAAGCAAAAGAAAAAAGCCCTGCGCTTGGTTGTCTGACCAAGGATGGGAAGATATCATTCTTTTATCAGAAATGTTTTCAGACAACTTTGGACAACTTCCTGATGATGTTGAGAATAATCAGACTATCTGGCAGGAGGTGAGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124020030 164 + 133663169 TAGGAAACATTTCCCTGGAGAAAAGCAGAAGAAAAAAGCCCTGCGCTTGGTTGTCTGACCAAGGATGGGAAGATATCATTCTTTTATCAGAAATGTTTTCAGACAGCTTTGGGCGACTTCCCGATGATGTTGAGAATAACCAGACTGTCTGGCAGGAGGTGAGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128268122 164 + 137757926 TAGGAAACATTTCCCTGGAGAAAAGCAGAAGAAAAAAGCCCTGCGCTTGGTTGTCTGACCAAGGATGGGAAGATATCATTCTTTTATCAGAAATGTTTTCAGACAGCTTTGGGCGACTTCCTGATGATGTTGAGAATAACCAGACTGTCTGGCAGGAGGTGAGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666797 164 - 16319837 TAGGAAACATTTCCCTGGAGAAAAGCAGAAGAAAAAAGCCCTGCGCTTGGTTGTCTGACCAAGGATGGGAAGATATCATTCTTTTATCAGAAATGTTTTCAGACAGCTTTGGGCGACTTCCTGATGATGTTGAGAATAACCAGACTGTCTGGCAGGAGGTGAGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290823 164 + 20526591 TAGGAAACATTTCCCTGGAGAAAAGCAGAAGAAAAAAGCCCTGCGCTTGGTTGTCTGACCAAGGATGGGAAGATATCATTCTTTTATCAGAGATGTTTTCAGACAGCTTTGGGCGACTTCCTGATGATGTTGAGAATAACCAGACTGTCTGGCAGGAGGTGAGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119262020 164 + 128539186 TAGGAAACATTTCCCTGGAGAAAAGCAGAAGAAAAAAGCCCTGCACTTGGTTGTCTGACCAAGGATGGGAAGATATCATTCTTTTATCAGAAATGTTTTCAGACAGCTTTGGGCGACTTCCTGATGATGTTGAGAATAACCAGACTGTCTGGCAGGAGGTAAGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 613490 164 + 6255621 TAGGAAACATTTCCCTGGAGAAAAGCAGAAGAAAAAAGCCCTGCGCTTGGTTGTCTGACCAAGGATGGGAAGATATCATTCTTTTATCAGAGATGTTTTCAGACAGCTTTGGGCGACTTCCTGATGATGTTGAGAATAACCAGACTGTCTGGCAGGAGGTGAGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4639653 164 - 8658521 TAGGAAACATTTCCCTGGAGAAAAGCAGAAGAAAAAAGCCCTGCGCTTGGTTGTCTGACCAAGGATGGGAAGATATCATTCTTTTATCAGAAATGTTTTCAGACAGCTTTGGGCAACTTCCTGATGATGTTGAGAATAACCAGACTGTCTGGCAGGAGGTGAGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843811 164 + 124281992 TAGGAAACATTTCCTTGGAGAAAAGCAGGAGAAAAAAGCCCTGCACTTGGCTGTCTGACCAAGGATGGGAAGATATCATTCTTCTATCAGAAATGTTTTCAGACATCTTCGGGCAACTTCCTGATGACGTGGAGAATAATCAGAATGCCTGGCAGGAGGTGAGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 486382 164 - 9212255 TAGGAAACATTTCCCTGGAGAAAAGCAAAAGAAAAAAGCCCTGCGCTTGGTTGTCCGACCAAGGATGGGAAGATATCATTCTTTTATCAGAGATGTTTTCAGACAACTTCGGGCAACTTCCTGATGATGTGGAGAATAATCAGAATGTCTGGCAGGAGGTGAGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2905213 164 + 4466143 TAGGAAACATTTCCCTGGAGAAAAGCAAAAGAAAAAAGCCCTGCACTTGGCTGTCCGACCAAGGATGGGAAGATATCGTTCTTTTATCAGAAATGTTTTCAGACAACTTCGGGCAACTTCCTGATGACGTGGAGAATAATCAGAATGTCTGGCAGGAGGTGAGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1608143 164 + 5364348 TAGGAAACATTTCCCTGGAGAAAAGCAAAAGAAAAAAGCCCTGCGCTTGGTTGTCCGACCAAGGATGGGAAGATATCATTCTTCTATCAGAAATGTTTTCAGACAACTTCGGGCAACTTCCTGATGACGTGGAGAATAATCAGAATGTCTGGCAGGAGGTGAGC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9491156 164 - 31815103 TAGGAAACATCTCACTGGAGAAAAGCAAATGGAAAAAGCCCTGTGGGTGGCTGTCCGACCAGGGCTGGGAAGATATCATCCTCTTGTCAGAAATGTTTTCAGAAGACTTCGGGCGACTTCCTAGTGATGTTGAGGATAATCACACGGTCTGGCAGGAGGTGAGC i micMur3.chr21 I 70 I 624 s proCoq1.NW_012154285v1 6745154 163 - 9870158 -AGGGAACATCTCCCTGGAGAAAAGCAAACGAAAAAAGCCGTGTGCGTGGCTGTCTGACCAGGGATGGGAAGATATCATTCTTTTATCAGAAATGTTTTCAGACGACTTTGGGCGACTCCCTGATGATGTTGAGAATCATCAGACGGTCTGGCAGGAGGTGAGC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4330890 164 + 7922563 TAGGAAACATCTCCCTGGAGAAAAGCAAACGGAAAAAGCCCGGCACTTGGCTGTCTGACCAGGGATGGGAAGATATCATTCTTTTATCAGAAATGTTTTCAGATGAGTTTGGGAAGCTTCCTGATGATGTTGAGGATCATCAGACCATCTGGCAGGAGGTAAGC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124823294 164 + 151834684 CAGGGAACATTTCTCTGGAGAAGAGCAAGTGGAAGAAACCATGCACCTGGCTGTCGGACCAGGGCTGGGAAGACATCATTCTCCTGTCACAAAAGTTTTCCGACATCTTTGGGAACCTTCCTCTTGATATTGAACATCATCTCCCCATGTGGCAGGAGGTAAGT i mm10.chr5 C 0 C 0 s canFam3.chr26 33179406 164 - 38964690 TAGGAAACATTTCCCTGGAGAAAAGCCAACGGAAAAAGCCCTGTGCTTGGTTGTCTGACCAGGGATGGGAAGATATCATGCTTTTGTCAGAAATGTTCTCAGATGACTTCGGGAACCTTCCTGATGATATTGAGAAACACGTGGCTGTCTGGAAGGAGGTGAAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 866350 164 - 1116856 TAGGAAACATTTCCTTGGAGAAAAGCAAACGAAAAAAGCCCTGTGCTTGGCTGTCTGACCAGGGCTGGGAAGACATCATGCTTTTATCAGAAATGTTTTCAGATGACTTCGGGCATCTTCCTGATGATGTCGAGAAGCATCAGACTGTCTGGCAGGATGTGAGC i dasNov3.JH568189 C 0 C 0 a score=405995.000000 s hg38.chr12_KI270834v1_alt 97982 30 + 119498 CCACGTTCC----CTTTCTCCTC-------CTCTCCTTCCC s panTro5.chr12 127383602 30 + 137163284 CCATGTTCC----CTTTCTCCTC-------CTCTCCTTCCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733906 30 + 135337776 CCATGTTCC----CTTTCTCCTC-------CTCTCCTTCCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247451 29 - 8369578 CCATGTTCC----CTTTCTCCTC-------CTCTCCTT-CC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97905664 30 + 106955855 CCATGTTCC----CTTTTTCCTC-------CTCTCCTTCCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124020194 30 + 133663169 CCATGCTCC----CTTTCTCCTC-------CTCTCCTTCCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128268286 30 + 137757926 CCATGCTCC----CTTTCTCCTC-------CTCTCCTTCCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666961 30 - 16319837 CCATGCTCC----CTTTCTCCTC-------CTCTCCTTCCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12290987 30 + 20526591 CCATGCTCC----CTTTCTCCTC-------CTCTCCTTCCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119262184 30 + 128539186 CCATGTTCC----CTTTCTCCTC-------CTCTCCTTCCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 613654 30 + 6255621 CCATGCTCC----CTTTCTCCTC-------CTCTCCTTCCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4639817 30 - 8658521 CCATGCTCC----CTTTCTCCTC-------CTCTCCTTCCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114843975 30 + 124281992 ACACGCTCC----CTTTCTCCTC-------GTCTTCTTCCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 486546 30 - 9212255 ACACGTTCC----CTTTCTCCTC-------CTCTTCTTCCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2905377 30 + 4466143 ACACGTTCC----CTTTCTCCTC-------CTCTTCTTTCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1608307 30 + 5364348 ACACGTTCC----CTTTCTCCTC-------CTCTTCTTCCC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6745317 30 - 9870158 TCGTGtcct----cctcctcctc-------ctctcctTCCC i proCoq1.NW_012154285v1 C 0 I 417 s otoGar3.GL873618 4331054 30 + 7922563 TCCTGTTCT----CTTCCTCCTC-------CTTTCCTTCCC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124823458 34 + 151834684 --GTGTGTG----TGTTCTCCCCAGCACAGCTGCTATCCC- i mm10.chr5 C 0 C 0 s canFam3.chr26 33179570 30 - 38964690 CCATGTTCT----CTGCCTCCGC-------CTTCCTTTCCC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 866514 33 - 1116856 TCATGTTCCTTCTCTTTCTCCTC--------TCCCCTTCCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9491320 624 - 31815103 I a score=197927.000000 s hg38.chr12_KI270834v1_alt 98012 17 + 119498 CACATGT-CAACAATCTC s panTro5.chr12 127383632 17 + 137163284 CACATGT-CAACAATCTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733936 17 + 135337776 CACATGT-CAACAATCTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247480 17 - 8369578 CACATGT-CAACAATCTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97905694 17 + 106955855 CACATGT-CAAGAATTCC i nomLeu3.chr10 C 0 I 153 s rheMac8.chr11 124020224 17 + 133663169 CACATGT-CAATAATCTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128268316 17 + 137757926 CACATGT-CAATAATCTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10666991 17 - 16319837 CACATGT-CAATAATCTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12291017 17 + 20526591 CACATGT-CAACAATCTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119262214 17 + 128539186 CACATGT-CAACAATCTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 613684 17 + 6255621 CACATGT-CAACAATCTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4639847 17 - 8658521 CACATGT-CAACAATCTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114844005 17 + 124281992 CACATGT-CCACAATCTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 486576 17 - 9212255 CACACGT-CCACAATCTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2905407 17 + 4466143 CACATGT-CCACAATCTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1608337 17 + 5364348 CACATGT-CCACAATCTC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4331084 17 + 7922563 TACTCAT-CAGCAGTCTC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124823492 18 + 151834684 CATCTGCACACTGAGCCC i mm10.chr5 C 0 C 0 s canFam3.chr26 33179600 13 - 38964690 ----TGT-CAGTCATCTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 866547 17 - 1116856 TACCCCT-CAACAATCCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9491320 624 - 31815103 I e proCoq1.NW_012154285v1 6745347 417 - 9870158 I a score=1326465.000000 s hg38.chr12_KI270834v1_alt 98029 130 + 119498 CAAACCTCAACTGTGGCCCAACCCCTTAA----GAGAAGACACTCCTTTGA------------------------GTAACCCATTCAGTGTGTAACTGATGCCCTGTAACTCCCTGATTGGAATTCTCCTTTGGCTAAT-TCAGCTAG-TTGTATGGGAG s panTro5.chr12 127383649 130 + 137163284 CAAACCTCAACTGTGGCCCAACCCCTTAA----GAGAAGACACTCCTTTGA------------------------GTAACCCATTCAGTGTGTAATTGATGCCCTGTAACTCCCTGATTGGAATTCTCCTTTGGCTAAT-TCAGCTAG-TTGTATGGGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125733953 130 + 135337776 CAAACCTCAACTGTGGCCCAACCCCTTAA----GAGAAGACACTCCTTTGA------------------------GTAACCCATTCAGTGTGTAATTGATGCCCTGTAACTCCCTGATTGGAATTCTCCTTTGGCTAAT-TCAGCTAG-TTGTATGGGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247497 130 - 8369578 CAAACCTCAACTGTGGCCCAACCCCTTAA----GAGAAGACACTCCTTTGA------------------------GTAACCCATTCAGTGTGTAATTGATGCCCTGTAACTCCCTGATTGGAATTCTCCTTTGGCTAAT-TCAGCTAG-TTGTATGGGAG i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124020241 129 + 133663169 TAAACCTCAACTGTGGCCCAACCCCTTAA----GAGAAGACACTCCTTTGA------------------------GTAACCCATT-AGTGTGTAATTGATGCCCTCTAACCCCCTGATTGGAATTCTCCTTTGGCTAAT-TCAGCTAG-TTGTATGGGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128268333 129 + 137757926 TAAACCTCAACTGTGGCCCAACCCCTTAA----GAGAAGACACTCCTTTGA------------------------GTAACCCATT-AGTGTGTAATTGATGCCCTCTAACCCCCTGATTGGAATTCTCCTTTGGCTAAT-TCAGCTAG-TTGTATGGGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10667008 129 - 16319837 TAAACCTCAACTGTGGCCCAACCCCTTAA----GAGAAGACACTCCTTTGA------------------------GTAACCCATT-AGTGTGTAATTGATGCCCTCTAACCCCCTGATTGGAATTCTCCTTTGGCTAAT-TCAGCTAG-TTGTATGGGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12291034 129 + 20526591 TAAACCTCAACTGTGGCCCAACCCCTTAA----GAGAAGACACTCCTTTGA------------------------GTAACCCATT-AGTGTGTAATTGATGCCCTCTAACCCCCTGATTGGAATTCTCCTTTGGCTAAT-TCAGCTAG-TTGTATGGGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119262231 129 + 128539186 TAAACCTCAACTGTGGCCCAACCCCTTGA----GAGAAGACACTCCTTTGA------------------------GTAACCCATT-AGTGTGTAATTGATGCCCTCTAACCCCCTGATTGGAATTCTCCTTTGGCTAAT-TCAGCTAG-TTGTATGGGAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 613701 129 + 6255621 TAAACCTCAACTGTGGCCCAACCCCTTAA----GAGAAGACACTCCTTTGA------------------------GTAACCCATT-AGTGTGTAATTGATGCCCTCTAACCCCCTGATTGGAATTCTCCTTTGGCTAAT-TCAGCTAG-TTGTATGGGAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4639864 153 - 8658521 TAAACCTCAACTGTGGCCCAACCCCTTAA----GAGAAGACACTCCTTTGAGTAACCCATTAGTGTGTAATTGATGTAACCCATT-AGTGTGTAATTGATGCCCTCTAACTCTCTGATTGGAATTCTCCTTTGGCTAAT-TCAGCTAG-TTGTATGGGAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114844022 130 + 124281992 CAAACCTGAACTGTGGCCCATCCCCTTAA----AAGAAGACACTCCTTCGA------------------------GTCATCTAGTCAGTGTGTCATCAGTGCCCTCTAACTCCCTGGTTGGAATTCTCCCTTGGCTAAT-TCAGCTAG-CTATATGAGAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 486593 130 - 9212255 CAAACCTGAACTGTGGCCCAGCCCCTTAA----AAGAAGACACTCCTTTGA------------------------GTCATCCATTCAGTGTGTAATCAATGCCCTCTAACATCCTGGTTGGAATTCTCCCTTGGCTAAT-TCAGCTAG-GTGTATGGGAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2905424 130 + 4466143 CAAACCTGAACTGTGGCCCAACTCCTTCA----AAGAAGACACTCCTTCGA------------------------GTCATCCATTCAGTGTGTGATCAATGCCCTCTAACTCCCTGGTTGGAATTCTCCCTTGGCTAAT-TCAGCTAG-GTGTATGGGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1608354 130 + 5364348 CAAACCTGAACTGTGGCCCAACCCCTTAA----AAGAAGACACTCCTTTGA------------------------GTCATCCATTCAGTGTGTAATCAATGCCCTATAACTCCCTGCTTGGAATTCTCCCTTGGCTAAT-TCAGCTAG-CTATATGGGAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4331101 130 + 7922563 TAGACTTAACTTGTGGCCCCACCCCTGTA-CGTGAGGATATACTACTTTGA------------------------GTAACACCTTCAGAGTGCAATCAGTGCTCTCTTACTCCCTGGATGGAATCTCCCTCTAGCTAAT-TCAGCTAG-CTGTA---GAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124823510 106 + 151834684 ACAGCCTC-------------CCCTTGCC----AGGAAAATGCTTCC----------------------------ACACTCCACA-------TGGCCCATGCCCT-TGAGTCCCCGGACACATTTTTCCTTCATCCAATCCCCGGTAA-CTGTGTGGGAG i mm10.chr5 C 0 I 432 s canFam3.chr26 33179613 132 - 38964690 GAGATTTAAATCATGGCCTTACTCCTTGTGAGTGAGAAGATACTCCA--GA------------------------GTGACCCAGTCAGAGTGTAGTCAGTGCCTGCCAGCACCCTTGATCAAATTCTCCTTTACCTACC-TCAGCTAG-TGTTGTGGGAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 866564 105 - 1116856 --------------------------CAA----GCTTACAGTTTCCTGTGA------------------------GCAACCTATTCACAGTGTAATCATTGCCCTCTGATTCCCTGCATGGAATTCTCCTTTATCTAAT-GCAGATAACCTGCGTGGGAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9491320 624 - 31815103 I e proCoq1.NW_012154285v1 6745347 417 - 9870158 I e nomLeu3.chr10 97905711 153 + 106955855 I a score=195757.000000 s hg38.chr12_KI270834v1_alt 98159 24 + 119498 atccaaccatctac--------ctgtccgtcc s panTro5.chr12 127383779 31 + 137163284 ATCCAACCATCTAC-TGTCCGTCCGtccatcc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125734083 32 + 135337776 ATCCAACCATCTACCTGTCCGTCCGtccatcc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247627 32 - 8369578 atccaaccatctacctgtccgtccgtccatcc i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124020370 24 + 133663169 atccaatcatctac--------ctgtccgtcc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128268462 24 + 137757926 ATCCAATCATCTAC--------CTGTCCGtcc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10667137 24 - 16319837 ATCCAATCATCTAC--------CTGTCCGTCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12291163 24 + 20526591 atccaatcatctac--------ctgtccgtcc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119262360 24 + 128539186 ATCCAATCATCTAC--------CTGtccatcc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 613830 24 + 6255621 ATCCAATCATCTAC--------CTGTCCGTCC i manLeu1.NW_012103587v1 C 0 I 571 s colAng1.NW_012116043v1 4640017 24 - 8658521 ATCCAATCATCTAC--------CTGtccatcc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114844152 24 + 124281992 atccaaccatctac--------ctgtccaccc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 486723 24 - 9212255 atccaaccatctac--------ctgtccaccc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2905554 24 + 4466143 atccaaccatctac--------ctgtcaaccc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1608484 24 + 5364348 atccaaccatctac--------ctgtccaccc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4331231 4 + 7922563 AACC---------------------------- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124824048 24 + 151834684 atccactcatcaat--------ctatctatcc i mm10.chr5 I 432 C 0 s canFam3.chr26 33179745 20 - 38964690 ----AACTGtccat--------ctgtccatct i canFam3.chr26 C 0 I 4 s dasNov3.JH568189 866669 12 - 1116856 AACCAATCATCT-------------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9491320 624 - 31815103 I e proCoq1.NW_012154285v1 6745347 417 - 9870158 I e nomLeu3.chr10 97905711 153 + 106955855 I a score=154788.000000 s hg38.chr12_KI270834v1_alt 98183 16 + 119498 gtcca--------tccatccat--------cc s panTro5.chr12 127383810 16 + 137163284 atcca--------tccatccat--------cc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125734115 24 + 135337776 atcca--------tccatccatccacccaccc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247659 16 - 8369578 atcca--------tccatccat--------cc i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124020394 16 + 133663169 gtccg--------tccgtccgt--------cc i rheMac8.chr11 C 0 I 439 s macFas5.chr11 128268486 16 + 137757926 atcca--------tccatccat--------cc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10667161 16 - 16319837 GTCCG--------tccatccat--------cc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12291187 16 + 20526591 gtccg--------tccatccat--------cc i cerAty1.NW_012001186v1 C 0 I 28 s chlSab2.chr11 119262384 16 + 128539186 atcca--------tccatccat--------cc i chlSab2.chr11 C 0 I 452 s colAng1.NW_012116043v1 4640041 16 - 8658521 atcca--------tccatccat--------cc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114844176 16 + 124281992 gtcct--------tccgtccat--------cc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 486747 16 - 9212255 atcct--------tccatccat--------cc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2905578 16 + 4466143 atcct--------tccatccgt--------cc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1608508 24 + 5364348 gtccttccgtccgtccatccat--------cc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4331235 16 + 7922563 Ttcca--------tccatctgt--------cc i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124824072 16 + 151834684 atcca--------tccatccac--------cc i mm10.chr5 C 0 C 0 s canFam3.chr26 33179769 16 - 38964690 gtcca--------tctgtcagt--------cc i canFam3.chr26 I 4 C 0 s dasNov3.JH568189 866681 16 - 1116856 GTCCA--------TCTCTCTAT--------CC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9491320 624 - 31815103 I e proCoq1.NW_012154285v1 6745347 417 - 9870158 I e manLeu1.NW_012103587v1 613854 571 + 6255621 I e nomLeu3.chr10 97905711 153 + 106955855 I a score=39371.000000 s hg38.chr12_KI270834v1_alt 98199 4 + 119498 acct s panTro5.chr12 127383826 4 + 137163284 acct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125734139 4 + 135337776 acct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247675 4 - 8369578 acct i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124020849 4 + 133663169 accc i rheMac8.chr11 I 439 C 0 s macFas5.chr11 128268502 4 + 137757926 atcc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10667177 4 - 16319837 atcc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12291231 4 + 20526591 accc i cerAty1.NW_012001186v1 I 28 C 0 s chlSab2.chr11 119262852 4 + 128539186 accc i chlSab2.chr11 I 452 C 0 s colAng1.NW_012116043v1 4640057 4 - 8658521 atcc i colAng1.NW_012116043v1 C 0 I 250 s calJac3.chr9 114844192 4 + 124281992 atcc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 486763 4 - 9212255 atcc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2905594 4 + 4466143 atcc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1608532 4 + 5364348 atcc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4331251 4 + 7922563 accc i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124824088 4 + 151834684 atct i mm10.chr5 C 0 C 0 s canFam3.chr26 33179785 4 - 38964690 atcc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 866697 4 - 1116856 ATCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9491320 624 - 31815103 I e proCoq1.NW_012154285v1 6745347 417 - 9870158 I e manLeu1.NW_012103587v1 613854 571 + 6255621 I e nomLeu3.chr10 97905711 153 + 106955855 I a score=43629.000000 s hg38.chr12_KI270834v1_alt 98203 6 + 119498 acccac s panTro5.chr12 127383830 6 + 137163284 acccac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125734143 6 + 135337776 acccac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247679 6 - 8369578 acccac i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124020853 6 + 133663169 acccag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128268506 6 + 137757926 atccat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10667181 6 - 16319837 atccat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12291235 6 + 20526591 acccac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119262856 6 + 128539186 acccac i chlSab2.chr11 C 0 C 0 s colAng1.NW_012116043v1 4640311 6 - 8658521 acccac i colAng1.NW_012116043v1 I 250 C 0 s calJac3.chr9 114844196 6 + 124281992 acccac i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 486767 6 - 9212255 acccac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2905598 6 + 4466143 atccac i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1608536 6 + 5364348 atccac i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4331255 6 + 7922563 acccgc i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124824092 6 + 151834684 gttcat i mm10.chr5 C 0 C 0 s canFam3.chr26 33179789 6 - 38964690 atccgt i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 866701 1 - 1116856 -T---- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9491320 624 - 31815103 I e proCoq1.NW_012154285v1 6745347 417 - 9870158 I e manLeu1.NW_012103587v1 613854 571 + 6255621 I e nomLeu3.chr10 97905711 153 + 106955855 I a score=171284.000000 s hg38.chr12_KI270834v1_alt 98209 16 + 119498 ccacccatccatccat s panTro5.chr12 127383836 16 + 137163284 ccacccatccatccat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125734149 16 + 135337776 ccacccatccatccat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247685 16 - 8369578 ccacccatccatccat i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124020859 16 + 133663169 ccacccatccatccat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128268512 16 + 137757926 ccatccatccatccat i macFas5.chr11 C 0 I 48 s macNem1.NW_012010578v1 10667187 16 - 16319837 ccatccatccatccat i macNem1.NW_012010578v1 C 0 I 423 s cerAty1.NW_012001186v1 12291241 16 + 20526591 ccacccatccatccat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119262862 16 + 128539186 ctacccatccatccat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 614425 16 + 6255621 ccacccatccatccat i manLeu1.NW_012103587v1 I 571 C 0 s colAng1.NW_012116043v1 4640317 16 - 8658521 ccacccatccatccat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114844202 16 + 124281992 ccaccaacccatccat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 486773 16 - 9212255 ccacctacccacccat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2905604 16 + 4466143 ccacccacccatccat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1608542 16 + 5364348 tcacccacccacccat i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4331261 13 + 7922563 acatccatccatc--- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124824098 16 + 151834684 ccatctatccatccat i mm10.chr5 C 0 C 0 s canFam3.chr26 33179795 13 - 38964690 ctgtccatccatc--- i canFam3.chr26 C 0 C 0 e micMur3.chr21 9491320 624 - 31815103 I e proCoq1.NW_012154285v1 6745347 417 - 9870158 I e dasNov3.JH568189 866702 0 - 1116856 C e nomLeu3.chr10 97905711 153 + 106955855 I a score=66947.000000 s hg38.chr12_KI270834v1_alt 98225 31 + 119498 ttacccaccgacccattcatctacccat----ctg s panTro5.chr12 127383852 31 + 137163284 TTacccactgacccattcatctacccat----ctg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125734165 31 + 135337776 TTacccactgacccattcatctacccat----ctg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247701 31 - 8369578 ttacccactgacccattcatctacccat----cta i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124020875 31 + 133663169 ttacccacctacccattcatctacccat----tcg i rheMac8.chr11 C 0 I 4 s macFas5.chr11 128268576 31 + 137757926 TTacccacctacccattcatctacccat----ccg i macFas5.chr11 I 48 C 0 s cerAty1.NW_012001186v1 12291257 31 + 20526591 ttacccacctacccattcatctacccat----ccg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119262878 31 + 128539186 ttacccacctacccattcatctacccat----cca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 614441 35 + 6255621 ttacccacctacccattcatctacccattcgccca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4640333 31 - 8658521 ttacccacctacccattcatctacccat----ccg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114844218 6 + 124281992 ----ccacct------------------------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 486789 6 - 9212255 ----ccatcc------------------------- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2905620 8 + 4466143 ----ccacccac----------------------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1608558 8 + 5364348 ----ccaccaac----------------------- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4331274 2 + 7922563 ---------------------------------tg i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124824114 31 + 151834684 ccatccatccatccatccatccatccat----cta i mm10.chr5 C 0 C 0 e micMur3.chr21 9491320 624 - 31815103 I e proCoq1.NW_012154285v1 6745347 417 - 9870158 I e dasNov3.JH568189 866702 0 - 1116856 C e canFam3.chr26 33179808 0 - 38964690 C e macNem1.NW_012010578v1 10667203 423 - 16319837 I e nomLeu3.chr10 97905711 153 + 106955855 I a score=59924.000000 s hg38.chr12_KI270834v1_alt 98256 13 + 119498 cccacccacccat s panTro5.chr12 127383883 13 + 137163284 cccacccacccat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125734196 13 + 135337776 cccacccacccat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247732 13 - 8369578 ctcatccgtccat i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124020910 13 + 133663169 cccacccacccac i rheMac8.chr11 I 4 C 0 s macFas5.chr11 128268607 13 + 137757926 cccgcccacccac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10667626 13 - 16319837 cccacccacccac i macNem1.NW_012010578v1 I 423 C 0 s cerAty1.NW_012001186v1 12291288 13 + 20526591 cccgcccacccac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119262909 13 + 128539186 cctgcccacccac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 614476 13 + 6255621 cccacccacctac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4640364 13 - 8658521 cccgcccacccac i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4331276 13 + 7922563 tccatctatcTGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124824145 13 + 151834684 tacaaccatccat i mm10.chr5 C 0 I 4 s canFam3.chr26 33179808 1 - 38964690 ------------t i canFam3.chr26 C 0 C 0 e micMur3.chr21 9491320 624 - 31815103 I e proCoq1.NW_012154285v1 6745347 417 - 9870158 I e dasNov3.JH568189 866702 0 - 1116856 C e aotNan1.NW_018491581v1 1608566 0 + 5364348 C e cebCap1.NW_016107484v1 2905628 0 + 4466143 C e saiBol1.JH378194 486795 0 - 9212255 C e calJac3.chr9 114844224 0 + 124281992 C e nomLeu3.chr10 97905711 153 + 106955855 I a score=70787.000000 s hg38.chr12_KI270834v1_alt 98269 25 + 119498 cTAC-----------------------------Tcatccatccatccatccatc s panTro5.chr12 127383896 45 + 137163284 ctacccat---------ccatccatccatccatccatccatccatccatccatc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125734209 33 + 135337776 ctac---------------------tcatccatccatccatccatccatccatc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247745 54 - 8369578 ccatccatccatccatcccatccatccatccatccatccatccatccatccatc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97905864 17 + 106955855 -------------------------------------CTACTcatccatccatc i nomLeu3.chr10 I 153 C 0 s rheMac8.chr11 124020923 25 + 133663169 -----------------------------ctactcatccatccatccacccatg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128268620 25 + 137757926 -----------------------------ctactcatccatccatccatccatc i macFas5.chr11 C 0 I 500 s macNem1.NW_012010578v1 10667639 25 - 16319837 -----------------------------ctactcatccatccatccacccatg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12291301 25 + 20526591 -----------------------------ctactcatccatccatccatccatc i cerAty1.NW_012001186v1 C 0 I 252 s chlSab2.chr11 119262922 25 + 128539186 -----------------------------ctactcatccatccatccacccatg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 614489 25 + 6255621 -----------------------------ctactcatccatccatccacccatg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4640377 25 - 8658521 -----------------------------ttactcatccatccatccacccatg i colAng1.NW_012116043v1 C 0 C 0 s cebCap1.NW_016107484v1 2905628 1 + 4466143 --------------------------------------------------c--- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1608566 1 + 5364348 --------------------------------------------------c--- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4331289 19 + 7922563 -----------------------------CTATTCatccatctgtcca------ i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124824162 25 + 151834684 -----------------------------cttttcatctgtccaGCCATCTCTC i mm10.chr5 I 4 C 0 s canFam3.chr26 33179809 25 - 38964690 -----------------------------ctgtccatccatccatccatccatc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 866702 18 - 1116856 ----------------------------TCTGGCCATCCATCCatc-------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9491320 624 - 31815103 I e proCoq1.NW_012154285v1 6745347 417 - 9870158 I e saiBol1.JH378194 486795 0 - 9212255 C e calJac3.chr9 114844224 0 + 124281992 C a score=2771983.000000 s hg38.chr12_KI270834v1_alt 98294 271 + 119498 catgcacccactcatccatccaCCTACACACCcgtc-catccaagaaatagttgttgggcatct----gccatgtaccatgtcccttgatgggcactggggact---cagtgaataagact-cagttgc-tcc--tttctcaatgtcatagccttt-----ggggg--------tagagaatgacagatCTGACCAG--GTGGCCTTCA-GTTAGTACACCTATGGATTCTCGTCCCTTTCCAGTGGCTTTTGCCACCTTCACACAT--AAATGGGGACCTATGTCATTTCTGAGTTGACG s panTro5.chr12 127383941 271 + 137163284 catgcacccactcatccatgcacctacgcacAcgtc-catccaagaaatagttgttgggcatct----gccatgtaccatgtcccttgatgggcactggggact---cagtgaataagact-tagttgc-tcc--tttctcaatgtcatagccttt-----ggggg--------tagagaatgacagaTCTGACCAG--GTGGCCTTCA-GTTAGTACACCTATGGATTCTCATCCCTTTCCAGTGGCTTTTGCCACCGTCACACAC--AAATGGGGACCTATGTCATTTCTGAGTTGACG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125734242 271 + 135337776 catgcacccactcatccatgcacctacgcacccgtc-catccaagaaatagttgttgggcatct----gccatgtaccatgtcccttgatgggcactggggact---cagtgaataagact-tagttgc-tcc--tttctcaatgtcatagccttt-----ggggg--------tagagaatgacagatCTGACCAG--GTGGCCTTCA-GTTAGTACACCTATGGATTCTCATCCCTTTCCAGTGGCTTTTGCCACCGTCACACAC--AAATGGGGACCTATGTCATTTCTGAGTTGACG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8247799 271 - 8369578 catgcacccactcatccatccaCCTACGCACCcgtc-catccaagaaatagttgttgggcatct----gccatgtaccatgtcccttgatgggcactggggact---ccgtgaataagact-cagttgc-tcc--tttctcaatgtcatagccttt-----ggggg--------tagagaatgacagaTCTGACCAG--GTGGCCTTCA-GTTAGTACACCTATGGATTCTCATCCCTTTCCAGTGGCTTTTGCCACCTTCACACAC--AAATGGGGACCTATGTCATTTCTGAGTTGACG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97905881 268 + 106955855 catccacccatccatccatccaCCTACACACCcatc-catccaagaagta---gttgggcatct----gccatgtaccatgtcccttgatgggcactggggact---cagtgaataagact-cagttgc-tcc--tttctcaatgccatagccttt-----ggggg--------tagagaatgacagaTCTGACCAG--GTGGCCTTCA-GTTAGTACACCTATAGATTCTTATACCTTTCCAGTGGCTTTTGCCACCTTCACACAC--AAATGGGGACCTATGTCATTTCTGAGTTGACG i nomLeu3.chr10 C 0 I 1 s rheMac8.chr11 124020948 264 + 133663169 catgcacctgcctatccatcTACCTACCGACCcatc-cattccagaaatagttgttgggcatct----accatgtaccatgtcccttgatgggc-------act---tagtgaataagact-cagtttc-tcc--tttctgaatgtcatagtcttt-----ggggg--------tagagaatgacagaTCTGACCAG--GTGGCCTTCA-GTTACTACACCTATAGATTCTCATCCCTTTCCAGTGGCTTTTGCCACCTTCACACAC--AAATGGGGACCTATGTCATTTCTGAGTTGATG i rheMac8.chr11 C 0 I 1 s macFas5.chr11 128269145 264 + 137757926 catgcacccacctatccatctacctaccgacccatc-catcccagaaatagttgttgggcatct----accatgtaccatgtcccttgatgggc-------act---tagtgaataagact-cagtttc-tcc--tttctgaatgtcatagtcttt-----ggggg--------tagagaatgacagaTCTGACCAG--GTGGCCTTCA-GTTACTACACCTATAGATTCTCATCCCTTTCCAGTGGCTTTTGCCACCTTCACACAC--AAATGGGGACCTATGTCATTTCTGAGTTGATG i macFas5.chr11 I 500 I 1 s macNem1.NW_012010578v1 10667664 264 - 16319837 catgcacccacctatccatcTACCTACCGACCcatc-catcccagaaatagttgttgggcatct----accatgtaccatgtcccttgatgggc-------act---tagtgaataagact-cagtttc-tcc--tttctgaatgtcatagtcttt-----ggggg--------tagagaatgacagaTCTGACCAG--GTGGCCTTCA-GTTACTACACCTATAGATTCTCATCCCTTTCCAGTGGCTTTTGCCACCTTCACACAC--AAATGGGGACCTATGTCATTTCTGAGTTGATG i macNem1.NW_012010578v1 C 0 I 1 s cerAty1.NW_012001186v1 12291578 264 + 20526591 catgcacccacctatccatcTACCTACCGACCcatc-catcccagaaatagttgttgggcatct----accatgtaccatgtcccttgatgggc-------act---cagtgaataagact-cagtttc-tcc--tttctgaatgtcatagtcttt-----ggggg--------tagagaatgacagaTCTGACCAG--GTGGCCTTCA-GTTACTACACCTATAGATTCTCATCCCTTTCCAGTGGCTTTTGCCACCTTCACACAC--AAATGGGGACCTATGTCATTTCTGAGTTGATG i cerAty1.NW_012001186v1 I 252 I 1 s chlSab2.chr11 119262947 264 + 128539186 catgcacccacctatccatctacctaccgacccatc-catcccagaaatagttgttgggcatct----accatgtaccgtgtcccttgatgggc-------act---cagtgaataagact-cagttcc-tcc--tttctgaatgtcatagtcttt-----ggcgg--------tagagaatgacagatCTGACCAG--GTGGCCCTCA-GTTACTACACCTATAGATTCTCATCCCTTTCCAGTGGCTTTTGCCACCTTCACACAC--AAATGGGGACCTATGTCATTTCTGAGTCGATG i chlSab2.chr11 C 0 I 1 s manLeu1.NW_012103587v1 614514 264 + 6255621 catgcacccacctatccatcTACCTACCGACCcatc-catcccagaaatagttgttgggcatct----accatgtaccatgtcccttgatgggc-------act---cagtgaataagact-cagtttc-tcc--tttctgaatgtcatagtcttt-----ggggg--------tagagaatgacagaTCTGACCAG--GTGGCCTTCA-GTTACTACACCTATAGATTCTCATCCCTTTCCAGTGGCTTTTGCCACCTTCACACAC--AAATGGGGACCTATGTCATTTCTGAGTTGATG i manLeu1.NW_012103587v1 C 0 I 1 s colAng1.NW_012116043v1 4640402 260 - 8658521 catgcacccacctatccatctacctaccgacccatc-catccaagaaatagttgttgggcatct----accatgtaccatgtcccttgatgggt-------act---cggtgagtaag-----agttcc-tcc--tttctgaatgtcatagtcttt-----ggggg--------tagagaatgacagacctgaccag--GTGGCCTTCA-GTTACTGCACCTATAGATTCTCATCCCTTTCCAGTGGCTTTTGCCACCTTCACACAC--AAATGGGGACCTATGTCATTTCTGAGTTGATG i colAng1.NW_012116043v1 C 0 I 1 s calJac3.chr9 114844224 242 + 124281992 -------------------------acccaCCcattccatccaagaaatagtta-tgggtatct----accatgtaccatgtcccttgatggacactggggact---cagtaaataagact-cggttccttcc--tttctgaatttc--agtcttt------gggg--------tggagaatgactgacctgaccag--GTGGCCTT---GTTAGCACACCTGTAGATTCTCATCCCTTTCCCGTGGCTTTTGCCACCTTCACACAC--AAATGGGGACGTCTGTCATTTCTGGGTTGATG i calJac3.chr9 C 0 I 1 s saiBol1.JH378194 486795 232 - 9212255 -------------------------accAACCcatg-catccaagaaatagtta-tgggtatct----accatgtaccatgtcccttgatgggcactggggact---cggtgaataagatt-caattccttcc--tttctgaatttcatagtcttt-----ggggg--------tggagaatgacagatctgaccag--GTGGCCCTCA-GTTC-TACACCTATAGATTCTCATCCCTTT-------------CCACCTTCGCACAC--AAATGGGGACCTCTGTCAAGTCTGAGTTGATG i saiBol1.JH378194 C 0 I 1 s cebCap1.NW_016107484v1 2905629 269 + 4466143 catgcacccacctatccatccacctacccacccatc-catccaagaaatagtta-tgggtatct----accatgtaccatgtcccttgatgggcactggggact---cggtgaataagact-cagttccttcc--tttctgaatttcatagtcttt-----ggggg--------tggggaatgacagatctgaccag--GT-GCCTTCA-GTTC-TACACCTATAGATTCTCATCCCTTTCCGATGGCTTTTGCCACCTTCACACAC--AAATGGGGACCTCTGTCATTTCTGAGTTGATG i cebCap1.NW_016107484v1 C 0 I 1 s aotNan1.NW_018491581v1 1608567 270 + 5364348 catgcacccacctgtccatccacctacccaCGcatc-catccaagaaatagtta-tgggtatct----gccatgtagcatgtcccttgatgggcactggggact---cagtgaataagact-cagttccttcc--tttctgaatttcatagtcttt-----ggggg--------tggagaatgacagatctgaccag--GT-GCCTTCA-GTTAGTACACCTGTAGATTCTCATCCCTTTCCGGTGGCTTTTGCCACCTTCACACAC--AAATGGGGACTTCTGTCATTTCTGAGTTGATG i aotNan1.NW_018491581v1 C 0 I 1 s otoGar3.GL873618 4331308 193 + 7922563 -------------------------------------------agaagtatctgttgaacactc----accaggcaccacgtcccctgatgggc-------ac-------tggagaAGTTTACAGTTCC-TCC--CTGTCCAAAGT-----------------------------------TTACAGTTTGAACTAG--ATG------A-GCTCACACATCTACACATTCTCATCTCTTTGCAATGGCTTTTGGCATCTTCACGTAAGGGGGCGGGGGGAGATGTCATTTCTGAGTTGATA i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124824187 217 + 151834684 CAT---------CACACATCCCCCTGTCCatccatc-cttccaagaactacttactgggcacct----cctggatgccgtgtcctctgA------------ACTC--CACTGATTGCTACT-TAGCTCT-TCTGGTTTTTTCAGCACACGGGTTTT-----GG------------------TGTCAACTCTGA-------------------GACCAAACGTTCAGATCTTCCTCTCTCTTCGGTGGCACATGGCACCTTCCCATGC--AGG----------TGTCATTTCTGAGCTGAGG i mm10.chr5 C 0 I 1 s canFam3.chr26 33179834 234 - 38964690 --------------------------------catc-cactcagaaa--------tgggcacca----acca----------cccttgatgggcactggggactcagcagtcaaaaagact-cactccctccc--tccctgaaggtcatagttttg-----gaaggggagGGAATCGAAAATGACAGATCTGACCGGAAGTGACCTTGA-GGTCATACTTCTGTAGGTT-TCATTCCTTTACAGTGACTTTTGGGACCTTCCTGTAA--AAATGGGGGCCTGTTTCGTTTCTGAGTTAAAG i canFam3.chr26 C 0 I 4 s dasNov3.JH568189 866720 254 - 1116856 --------------------------------catg-catccaagaaataattattgaacatatactcaccatggaccaggtcccttgataggcactggggactgaatagtgaataagacc-cagcccctccc--tttctaaagttcatagttttgggagaggggg--------tagaaaacaacagatCCATCCAGAAATAGCCTTCAGGGTCAAGTTCCTACAGATTCTCATTCCTTTACAATGGCTTTTGGAGCCTTCACGTAG--AGATGGGGTCTT-TGTCATTTCTGAGTTGATG i dasNov3.JH568189 C 0 I 1 e micMur3.chr21 9491320 624 - 31815103 I e proCoq1.NW_012154285v1 6745347 417 - 9870158 I a score=3658544.000000 s hg38.chr12_KI270834v1_alt 98565 190 + 119498 CACAATGAATATTCTTTGCTTTTCCCAGTGGTATGACCTGGATTCACTGGAGCAGTTTCCCGTCCCCTTGGGTTACGATAACAACATCACCCCTTTCCAGAAGTTGCTTATTTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCCGTGACTGACTATGTGACTGTAACAATGGGAGAGAAGTAAGTG s panTro5.chr12 127384212 188 + 137163284 CACAATGAATATTC--TGCTTTTCCCAGTGGTATGACCTGGATTCACTGGAGCAGTTTCCCTTCCCCTTGGGTTACGATAACAACATCACCCCTTTCCAGAAGTTGCTTATTTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCCGTGACTGACTATGTGACTGTAACAATGGGAGAGAAGTAAGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125734513 188 + 135337776 CACAATGAATATTC--TGCTTTTCCCAGTGGTATGACCTGGATTCACTGGAGCAGTTTCCCTTCCCCTTGGGTTACGATAACAACATCACCCCTTTCCAGAAGTTGCTTATTTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCCGTGACTGACTATGTGACTGTAACAATGGGAGAGAAGTAAGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8248070 190 - 8369578 CACAATGAATATTCTTTGCTTTTCCCAGTGGTATGACCTGGATTCACTGGAGCAGTTTCCCCTCCCCTTGGGTTACGATAACAACATCACCCCTTTCCAGAAGTTGCTTATTTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCCGTGACTGACTATGTGACTGTAACAATGGGAGAGAAGTAAGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97906150 190 + 106955855 CACAATGAATATTCTTTGCTTTTCCCAGTGGTATGACCTGGATTCACTGGAGCAGTTTCCGTTCCCCTTGGGTTACGATAACAACATCACACCTTTCCAGAAGTTGCTTATTTTGCGCTGTTTCCGCGTGGATCGGGTCTATCGGGCAGTGACTGACTATGTGACTGTAACAATGGGAGAGAAGTAAGTG i nomLeu3.chr10 I 1 C 0 s rheMac8.chr11 124021213 190 + 133663169 CACAATGAATATTCTTTGCTTTTCCCAGTGGTATGACCTGGATTCACTGGAGCAGTTTCCATTCCCCTTGGGTTACGATAACAACATCACCCCTTTCCAGAAATTGCTTATTTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCAGTGACTGACTATGTGACTGTAACAATGGGAGAGAAGTAAGTG i rheMac8.chr11 I 1 C 0 s macFas5.chr11 128269410 190 + 137757926 CACAATGAATATTCTTTGCTTTTCCCAGTGGTATGACCTGGATTCACTGGAGCAGTTTCCATTCCCCTTGGGTTACGATAACAACATCACCCCTTTCCAGAAATTGCTTATTTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCAGTGACTGACTATGTGACTGTAACAATGGGAGAGAAGTAAGTG i macFas5.chr11 I 1 C 0 s macNem1.NW_012010578v1 10667929 190 - 16319837 CACAATGAATATTCTTTGCTTTTCCCAGTGGTATGACCTGGATTCACTGGAGCAGTTTCCATTCCCCTTGGGTTACGATAACAACATCACCCCTTTCCAGAAATTGCTTATTTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCAGTGACTGACTATGTGACTGTAACAATGGGAGAGAAGTAAGTG i macNem1.NW_012010578v1 I 1 C 0 s cerAty1.NW_012001186v1 12291843 190 + 20526591 CACAATGAATATTCTTTGCTTTTCCCAGTGGTATGACCTGGATTCACTGGAGCAGTTTCCATTCCCCTTGGGTTACGACAACAACATCACCCCTTTCCAGAAATTGCTTATTTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCAGTGACTGACTATGTGACTGTAACAATGGGAGAGAAGTAAGTG i cerAty1.NW_012001186v1 I 1 C 0 s chlSab2.chr11 119263212 190 + 128539186 CACAATGAATATTCTTTGCTTTTCCCAGTGGTATGACCTGGATTCACTGGAGCAGTTTCCATTCCCCTTGGGTTACGATAACAACATCACCCCTTTCCAGAAATTGCTTATTTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCAGTGACTGACTATGTGACTGTAACAATGGGAGAGAAGTAAGTG i chlSab2.chr11 I 1 C 0 s manLeu1.NW_012103587v1 614779 190 + 6255621 CACAATGAATAATCTTTGCTTTTCCCAGTGGTATGACCTGGATTCACTGGAGCAGTTTCCATTCCCCTTGGGTTACGATAACAACATCACCCCTTTCCAGAAATTGCTTATTTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCAGTGACTGACTATGTGACTGTAACAATGGGAGAGAAGTAAGTG i manLeu1.NW_012103587v1 I 1 C 0 s colAng1.NW_012116043v1 4640663 190 - 8658521 CACAATGAATATTCTTTGCTTTTCCCAGTGGTATGACCTGGATTCACTGGAGCAGTTTCCATTCCCCTTGGGTTACGATAACAACATCACCCCTTTCCAGAAATTGCTTATTTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCAGTGACTGACTATGTGACTATAACAATGGGAGAGAAGTAAGTG i colAng1.NW_012116043v1 I 1 C 0 s calJac3.chr9 114844467 190 + 124281992 CGCCGTGAATATTCTTTGCTTTTCCCAGTGGTATGACCTGGACTCATTGGAGCAGTTTCCATTCCCCTTGGGGTACGATAAGAACATCACCCCTTTCCAGAAGTTGCTCATTTTGCGCTGTTTCCGTGTGGACCGGGTCTATCGGGCAGTGACTGACTATGTGACTGTGACAATGGGAGAGAAGTAAGTG i calJac3.chr9 I 1 C 0 s saiBol1.JH378194 487028 190 - 9212255 CGCCATGAATATTCTTTGCTTTTCCCAGTGGTATGACCTGGATTCATTGGAGCAGTTTCCCTTCCCCTTGGGTTACGATAAGAACATCACCCCTTTCCAGAAGTTGCTTATCTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCAGTGACTGACTATGTGACTGTAATGATGGGAGAGAAGTAAGTG i saiBol1.JH378194 I 1 C 0 s cebCap1.NW_016107484v1 2905899 188 + 4466143 CGCCATGAATATTCTTTGCTTTTCCCAGTGGTATGACCTGGATTCATTGGAGCAGTTTCCATTCCCCTTGGGTTACGATAAGAACCTCACCCCTTTCCAGAAGTTGCTCATTTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCAGTGACTGACTATGTGACTGTAACGATGGGGGAGAAGTAA--G i cebCap1.NW_016107484v1 I 1 C 0 s aotNan1.NW_018491581v1 1608838 190 + 5364348 CACCATGAATATTCTTTGCTTTTCCCAGTGGTATGACCTGGATTCATTGGAGCAGTTTCCATTCCCCTTGGGTTACGATAAGAACATCACCCCTTTCCAGAAGTTGCTCATTTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCAGTGACTGACTATGTGACTGTAACGATGGGAGAGAAGTAAGTG i aotNan1.NW_018491581v1 I 1 C 0 s micMur3.chr21 9491944 190 - 31815103 CACAGTGAATATGCTTTGCTTTTCCCAGTGGTATGACGTGGACTCACTCGAGCAGCTTCCGTTCCCCTTGGGTTATGACAAACACATCACCGCCTTCCAGAAGTTGCTTATTTTGCGCTGTTTCCGTGTGGATCGCGTGTACCGGGCAGTGACCGACTACGTGACCGTGACAATGGGAGAGAAGTAAGTG i micMur3.chr21 I 624 C 0 s proCoq1.NW_012154285v1 6745764 190 - 9870158 CACAATGAATGTTCTTTGCTTTTCCCAGTGGTATGACGTGGATTCACTCGAGCAGCTTCCATTCCCCTTGGGTTACGATAAAAACATCACCCCTTTCCAGAAGTTGCTTATTTTGCGCTGTTTCCGTGTGGATCGGGTGTATCGGGCGGTGACCGACTACGTGACTGTCACAATGGGAGAGAAGTAAGTG i proCoq1.NW_012154285v1 I 417 C 0 s otoGar3.GL873618 4331502 190 + 7922563 CACAATGAATATTTTTTGCTTTTCCCAGTGGTATGACCTGGATTCACTGGAACAGTTTCCGTTCCCCTTGGGTTATGATAAAAACATCACCCCCTTTCAGAAGTTGCTTATTTTGCGCTGCTTCCGTGTGGATCGGGTATATCGGGCAGTGACCGACTATGTGACTGTAACAATGGGAGAGAAGTAAGTG i otoGar3.GL873618 I 1 C 0 s mm10.chr5 124824405 190 + 151834684 CACAGTCAGTCCTCTTTGCTTCTCGCAGTGGTACGACCAGGATTCACTCGAGCAGTTCCCGTTCCCCCTGGGCTACGATGATAACATCACTGCTTTCCAGAAACTGCTGATTTTACGCTGTTTCCGAGTAGACCGGGTGTACCGGGCGGTGACTGACTATGTGACCCTCACCATGGGAGAAAAGTGAGTG i mm10.chr5 I 1 I 1991 s canFam3.chr26 33180072 189 - 38964690 CACAA-AAATACTCTTTGTTCTTCCCAGTGGTATGACCTGGACTCCCTCGAGCAGTTTCCATTCCCTTTGGGTTACGATAACAACATCACCCCTTTCCAGAAGTTGCTTATTTTGCGTTGTTTCCGTGTGGATCGGGTGTATCGGGCGGTGACCGACTATGTGACTGTAACAATGGGAGAGAAGTAAGTG i canFam3.chr26 I 4 C 0 s dasNov3.JH568189 866975 190 - 1116856 CATAATGAATGTTCTTTGCTCTTCCTAGTGGTATGACCTGGATTCACTTGAACAGTTTCCATTCCCCTTGGATTATGATAAACGCATCACCAATTTCCAGAAGTTGCTTATTTTGCGCTGTTTCCGCGTAGATCGAGTATATCGGGCAGTGACTGACTATGTGACTGTAACGATGGGAGAGAAGTGAGTG i dasNov3.JH568189 I 1 C 0 a score=33521.000000 s hg38.chr12_KI270834v1_alt 98755 2 + 119498 TG s panTro5.chr12 127384400 2 + 137163284 TG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125734701 2 + 135337776 TG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8248260 2 - 8369578 TG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97906340 2 + 106955855 TG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124021403 2 + 133663169 TG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128269600 2 + 137757926 TG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10668119 2 - 16319837 TG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12292033 2 + 20526591 TG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119263402 2 + 128539186 TG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 614969 2 + 6255621 TG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4640853 2 - 8658521 TG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114844657 2 + 124281992 TG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 487218 2 - 9212255 TG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2906087 2 + 4466143 TG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1609028 2 + 5364348 TG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9492134 2 - 31815103 TG i micMur3.chr21 C 0 I 1422 s proCoq1.NW_012154285v1 6745954 2 - 9870158 TG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4331692 2 + 7922563 TG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33180261 2 - 38964690 CG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 867165 2 - 1116856 AG i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124824595 1991 + 151834684 I a score=129940.000000 s hg38.chr12_KI270834v1_alt 98757 10 + 119498 TCGTTT-TGTT s panTro5.chr12 127384402 10 + 137163284 TCGTTT-TGTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125734703 10 + 135337776 TCGTTT-TGTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8248262 10 - 8369578 TCGTTT-TGTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97906342 10 + 106955855 TCGTTT-TGTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124021405 10 + 133663169 TCGTTT-TGTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128269602 10 + 137757926 TTGTTT-TGTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10668121 10 - 16319837 TCGTTT-TGTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12292035 10 + 20526591 TCGTTT-TGTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119263404 10 + 128539186 TCGTTT-TGTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 614971 10 + 6255621 TCGTTT-TGTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4640855 10 - 8658521 TCATTT-TGTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114844659 10 + 124281992 TCATTT-TGTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 487220 10 - 9212255 TCATTT-TGCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2906089 10 + 4466143 TCATTT-TGTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1609030 10 + 5364348 TCATTT-TGTT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6745956 10 - 9870158 CTGTTT-TGTT i proCoq1.NW_012154285v1 C 0 I 1053 s otoGar3.GL873618 4331694 10 + 7922563 TTGTTT-GGTG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33180263 10 - 38964690 TTGTTG-AGTT i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 867167 11 - 1116856 TTGTTTGTGTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I a score=2110082.000000 s hg38.chr12_KI270834v1_alt 98767 208 + 119498 GATTTGCCA----CTTTCCGTGGGGTGGAATCTCTAGCGTCCTCCCACCTTGGACTCAAAGAAAGCAGAGGCTGACCAGCTCCCGAGACAGCTGTCGCCACCCTG---CTGTACAATATTCGATAGCCGATATTCTAGAATTCTTCAATATTCTAGAAc------------------agtgctagtcataagaaattcagtgtgagccacatatgc-agtttcgaaagttctag s panTro5.chr12 127384412 208 + 137163284 GATTTGCCA----CTTTCTGTGGGGTGGAATCTCTAGCGTCCTCCCACCTTGGACTCAAAGAAAGCAGAGGCTGACCAGCTCCCGAGACAGCTGTCGCCACCCTG---CTGTACAATATTCGATAGCCAATATTCTAGAATTCTTCAATATTCTAGAAc------------------agcgctagtcataagaaattcaatgtgagccacatatgc-agttttgaaagttctag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125734713 208 + 135337776 GATTTGCCA----CTTTCTGTGGGGTGGAATCTCTAGCGTCCTCCCACCTTGGACTCAAAGAAAGCAGAGGCTGACCAGCTCCCGAGACAGCTGTCGCCACCCTG---CTGTACAATATTCGATAGCCAATATTCTAGAATTCTTCAATATTCTAGAAT------------------agcgctagtcataagaaattcaatgtgagccacatatgc-agttttgaaagttctag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8248272 208 - 8369578 GATTTGCCA----CTTTCCGTGGGGTGGAATCTCTAGCGTCCTCCCACCTTGGACTCAAAGAAAGCAGAGGCTGACCAGCTCCCGAGACAGCTGTCGCCACCCTG---CTGTACAATATTCGATAGCCAATATTCTAGAATTCTTCAATATTCTAGAAc------------------agcgctagtcataagaaattcaatgtgagccacatatgc-agtttcgaaagttctag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97906352 202 + 106955855 GATTTGCCA----CTTTCCGTGGGGTGGGATCTCTAGCATCCTCCCACCTTGGACTC----AAAGCAGAAGCTGACCAGCTCCCGAGACAGCTGTCGCCACCCTG--TCTGTACAATATTCCATAGCCAATATTCTAGAATTCTTCAATATTCTAGAAc------------------agtgctagtcacaagaaattcaatgtgagccacatatgc-agttctgca---catag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124021415 209 + 133663169 GATTTGCCA----CTTTTCGTGGGGTGGGATCGCCAGCATCCTCCCACCTTGGGCTCAAAGAAAGCAGAGGCTGACCAGCTCCCGTGACAGCTGTCGCCACCCTG--TCTGGACAATATTCCATAGCCAATATTCTAGAATTCTTCAATATTCTAGAAc------------------agcgctagtcacaagaaattcaatgtgagccacatatgc-agtttcaaaagttctag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128269612 209 + 137757926 GATTTGCCA----CTTTTCGTGGGGTGGGATCGCCAGCATCCTCCCACCTTGGGCTCAAAGAAAGCAGAGGCTGACCAGCTCCCGTGACAGCTGTCGCCACCCTG--TCTGGACAATATTCCATAGCCAATATTCTAGAATTCTTCAATATTCTAGAAc------------------agcgctagtcacaagaaattcaatgtgagccacatatgc-agtttcaaaagttctag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10668131 209 - 16319837 GATTTGCCA----CTTTTCGTGGGGTGGGATCGCCAGCATCCTCCCACCTTGGGCTCAAAGAAAGCAGAGGCTGACCAGCTTCCGTGACAGCTGTCGCCACCCTG--TCTGGACAATATTCCATAGCCAATATTCTAGAATTCTTCAATATTCTAGAAc------------------agcgctagtcacaagaaattcaatgtgagccacatatgc-agtttcaaaagttctag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12292045 209 + 20526591 GATTTGCCG----CTTTTCGTGGGGTGGCATCGCCAGCATCCTCCCACCTTGGGCTCAAAGAAAGCAGAGGCTGACCAGCTCCCGTGACAGCTGTCGCCACCCTG--TCTGGACAATATTCCATAGCCAATATTCTAGAATTCTTCAATATTCTAGAAc------------------agcgctagtcacaagaaattcaatgtgagccacatatgc-agtttcgaaagttctag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119263414 209 + 128539186 GATTTGCTG----CTTTCCGTGGGGTGGGATCGCTAGCATCCTCCCACCTTGGGCTCAAAGAAAGCAGAGGCTGACCAGCTCCCGAGACAGCTCTCGCCACCCTG--TCTGGACAATATTCCATAGCCAATATTCTAGAATTCTTCAATATTCTAGAAc------------------agcgctagtcacaagaaattccatgtgagccatatatgc-agtttcgaaagttctag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 614981 209 + 6255621 GATTTGCCG----CTTTTCATGGGGTGGGATCGCCAGCATCCTCCCACCTTGGGCTCAAAGAAAGCAGAAGCTGACCAGCTCCCGTGACAGCTGTCGCCACCCTG--TCTGGACAATATTCCATAGCCAATATTCTAGAATTCTTCAATATTCTAGAAc------------------agcgctagtcacaagaaattcaatgtgagccacatatgc-agtttcgaaagttctag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4640865 209 - 8658521 GATCTGCTG----CTTTCCGTGGGGTGTGATCGCTAGGATCCTCCCACCCTGGGCTCAAAGAAAGCAGAGGCTGACCAGCTCCCAAGACAGCTGTCGCCACCCTG--TCTGGACAATATTCCATAGCCAATATTCTAGAATTCTTCAATATTCTAGAAc------------------agcgctagtcacaagaaattcaatgtgagccacatgtgc-agtttcgaaagttctag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114844669 190 + 124281992 GATTTGCCA----CTTTCCGTGGGGTGGACTCTCTAGCATCCTCCCACCTTGGACTCAAAGCAAGCAG--GCTGACCAGCTCCCGAGACAGC-------------------TGCAATATTTGATAGCCAATATTCTAGAATTCTTCAGTATTCTAGAAc------------------agcgctatttgtgagaaatttgatgtgagacacgtatgc-agtttcaaaagttctgg i calJac3.chr9 C 0 I 326 s saiBol1.JH378194 487230 225 - 9212255 GATTTGCCA----CTTTCTGTGGGGTGGAATCTCTAGCATCCTCCCACCTTGGACTCAAAGCAAGCAG--GCTGACCAGCTCCCGAGACAGCTGTCGGCACCCTG--TCTGTGCAATATTTGATAGCCAATATTCTAGAATTCTTCAGTCTTCTAGAACTCTTCAGTCTTCTAGAAGagtgctatttgcaagaaatttgatgtgagccacatatgc-agtttcaaaagttctag i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2906099 204 + 4466143 GATTTGCCA----CTTTCCGTGGGGTGGACTCTCTAGCATCCTCCCACCTTGGACTCAGAGCACGCAG--GCTGACCAGCTCCCGAGACAGC---TGTCACCCTG--TCTGTGCAATATTTGATAGCCAATATTCTAGAATTCTTCAGTATTCTAGAAc------------------agcgctatttgcaagaaatttgatgtgagccacatatgc-agtttcaaaagttctag i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1609040 207 + 5364348 GATTTGCCA----CTTTCCGTGGGGTGGACTCTCTAGCATCCTCTCACCTTGGACTCAAAGCAAGCAG--GCTGTCCAGCTCCCGAGATAGCTGTCGTCACCCTG--TCTGTGCAATATTTGATAGCCAATATTCTAGAATTCGTCAGTATTCTAGAAc------------------agtgctatttgcaagaaatttgatatgagccacatatgc-agtttcaaaagttctag i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4331704 189 + 7922563 -TATTGCCC----CTTTCGATGGGGTAGAAAATCTAACATTACCTCCACCTGGATACACAGAGAGCAGTAGCTGGCCAGCTTCCAAGGGGACCATCACAGCCCTGACTTTGAGCAATATTTGATAGTCA---------------------CTCTAGAAT------------------agcgctattcgacagaaataacatgtgagccacatttgt-aattccaaatcttagag i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33180274 174 - 38964690 GCTTTG--A----CCTTCTGTGGGGT--CACTGCCCCCTGCCCTACACCCCGGACTGGTAGACAGCAGTG-------AGCTTCTGAGAGAGCCACCACTGCCCTGGCTTTGAGCAGTGTTTGGTAGTCA---------------------CTCTAGTTC------------------Tgcgctatctgggagaagtacagtgtaaaccacgtgtgt-gaagtc-----ttctag i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 867178 160 - 1116856 ----TGCTGGGGCCTGTCTTTGGGGTAGAACATCTGCTGCCATCCCCACCTGGGTGCAC-------------------------------GCTACCTCAGCCCTT-CCTTGGGCATTGTTTGCTGCTCA---CTCTAG-----------------GAAc------------------agcattactcaagagaaatacagtgcaagccacatatgtgattttcatattttctgg i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I a score=118931.000000 s hg38.chr12_KI270834v1_alt 98975 10 + 119498 tagctacatt s panTro5.chr12 127384620 10 + 137163284 tagctacatt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125734921 10 + 135337776 tagctacatt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8248480 10 - 8369578 tagctacatt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97906554 10 + 106955855 tagctacatt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124021624 10 + 133663169 tagctccgtt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128269821 10 + 137757926 tagctccatt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10668340 10 - 16319837 tagctccatt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12292254 10 + 20526591 tagctccatt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119263623 10 + 128539186 tagctccatt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 615190 10 + 6255621 tagctccatt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641074 10 - 8658521 tagctccatt i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 487455 10 - 9212255 tagctacatt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2906303 10 + 4466143 tagctacatt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1609247 10 + 5364348 tagctacatt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4331893 10 + 7922563 tagccacatt i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33180448 10 - 38964690 tagccgcatt i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 867338 10 - 1116856 tagccacatt i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I e calJac3.chr9 114844859 326 + 124281992 I a score=3214611.000000 s hg38.chr12_KI270834v1_alt 98985 301 + 119498 ----agaaaagaaatgggcgcaa-ttaattgtaataacat--tttatttaaatgaatatattaaaa---t--------------------------------tatcatttgaatgtataatcaatatgaacatgattgagacattttacatgc---------------------------------------------------------ttttttctggtattaagtctacaaaat----cctgtgtgaattcacactt-ac-agcacatctcaattggggctagccacattttaagtgctg------------tgcctcacggccat-cgcac---------tggacaatgtagCTCTAGCATGGGGTACGAAGCCAGGCGGAGCGTGTGGGGCTGCAGCTCAGATGTGCCCTTGTAGCCAGCAGG s panTro5.chr12 127384630 301 + 137163284 ----agaaaagaaatgggcgcaa-ttaattgtaataacat--tttatttaaatgaatatattaaaa---t--------------------------------tatcatttgaatgtataatcaatatgaacatgattgagacattttacatgc---------------------------------------------------------ttttttttggtattaagtctacaaaat----cctgtgtgaattcacactt-ac-agcacatctcaattggggctagccacattttaagtgctg------------tgcctcacggccat-cgcac---------tggacaatgtagCTGTAGCATGGGGTACGAAGCCAGGCGGAGCGCGTGGGGCTGCAGCTCAGATGTGCCCTTGTAGCCAGCAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125734931 301 + 135337776 ----agaaaagaaatgggcgcaa-ttaattgtaataacat--tttatttaaatgaatatattaaaa---t--------------------------------tatcatttgaatgtataatcaatatgaacatgattgagacattttacatgc---------------------------------------------------------ttttttttggtattaagtctacaaaat----cctgtgtgaattcacactt-ac-agcacatctcaattggggctagccacattttaagtgctg------------tgcctcacggccat-cgcac---------tggacaatgtagCTGTAGCATGGGGTACGAAGCCAGGCGGAGCGCGTGGGGCTGCAGCTCAGATGTGCCCTTGTAGCCAGCAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8248490 299 - 8369578 ----agaaaagaaatgggcgcaa-ttaattgtaataacat--tttatttaaatgaatatattaaaa---t--------------------------------tatcatttgaatgtataatcaatatgaacatgattgagacattttacatgc---------------------------------------------------------ttttttttggtattaagtctacaaaat----cctgtgtgaattcacactt-ac-agcacatctcaattggggctagccacattttaagtgct-------------tgcctcacggccat-cgcac---------tggacagtgtagCTCTAGCATGGGGTACGAAGCCAGGC-GAGTGCGTGGGGCTGCAGCTCAGATGTGCCCTTGTAGCCAGCAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97906564 313 + 106955855 ----agaaaagaaatgggcacaa-tgaattgtaataacatactttatttacatgaatatattaaaa---t--------------------------------tatcatttgaatgtataatcaatatgaacatgattgagacattttacatgc---------------------------------------------------------tttttt-tggtattaagtcttcaaaat----cctgtgtgaattcacactt-ac-agcacatctcaattggggctagccaca-tttaagcgctgagtagtcgcatttgcctcatggccat-cacac---------tggacaatgtagCTCTAGCGTGGGGTACGAAGCCAGGCAGAGAGCATGGGGCTGCAGCTCAGATGTGCCCTTGCAGCCAGCAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124021634 311 + 133663169 ----agaaaagaaatgggcgcaa-ttaattgtaat-atat--tttatttaaatgaatatattaaaa---t--------------------------------tatcatttaaatgtataatcagtatgaacatgattgagacatcttacatgc---------------------------------------------------------tttttt-tggtattaagtcttcaaaat----cctgtgtgaattcacactt-ac-agcacatctcaattggggccagccacattttaagtgctgagtcgctgcgtgtgcctcatggccgt-cacac---------tggacaatgTTGCTCTAGCATGGGGTACAAAGCCAGGCAGAGAGCGTGGGACTGCAGCTCAGATGTGCCCTTGCAGCCAGTAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128269831 311 + 137757926 ----agaaaagaaatgggcgcaa-ttaattgtaat-atat--tttatttaaatgaatatattaaaa---t--------------------------------tatcatttaaatgtataatcagtatgaacatgattgagacatcttacatgc---------------------------------------------------------tttttt-tggtattaagtcttcaaaat----cctgtgtgaattcacactt-ac-agcacatctcaattggggccagccacattttaagtgctgagtcgctgcgtgtgcctcatggccgt-cacac---------tggacaatgTTGCTCTAGCATGGGGTACAAAGCCAGGCAGAGAGCGTGGGACTGCAGCTCAGATGTGCCCTTGCAGCCAGTAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10668350 311 - 16319837 ----agaaaagaaatgggcgcaa-ttaattgtaat-atat--tttatttaaatgaatatattaaaa---t--------------------------------tatcatttaaatgtataatcagtatgaacatgattgagacatcttacatgc---------------------------------------------------------tttttt-cggtattaagtcttcaaaat----cctgtgtgaattcacactt-ac-agcacatctcaattggggccagccacattttaagtgctgagtcgctgcgtgtgcctcatgaccgt-cacac---------tggacaatgTTGCTCTAGCATGGGGTACAAAGCCAGGCAGAGAGCGTGGGACTGCAGCTCAGATGTGCCCTTGCAGCCAGTAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12292264 311 + 20526591 ----agaaaagaaatgggcgcaa-ttaattgtaat-atat--tttatttaaatgaatatattaaaa---t--------------------------------tatcatttaaatgtataatcaatatgaacatgattgagacattttacatgc---------------------------------------------------------tttttt-tggtattaagtcttcaaaat----cctgtgtgaattcacactt-ac-agcacatctcaattggggccagccacattttaagtgctgagtcgccgcgtgtgcctcatggccat-cacac---------tggacaatgTTGCTCTAGCATGGGGTACAAAGCCAGGCAGAGAGCGTGAGACTGCAGCTCAGATGTGCCCTTGCAGCCAGTAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119263633 311 + 128539186 ----agaaaagaaatgggcgcaa-ttaattgtaat-atat--tttatttaaatgaatatattaaaa---t--------------------------------tatcatttaaatgtacaatcaatatgaacatgattgagacattttacatgc---------------------------------------------------------tttttt-tggtattaagtcttcaaaat----cctgtgtgaattcacactt-ac-agcacatctcaattggggccagccacattttaagtgctgagtcgccgcgtgtgcctcatggctgt-cgcac---------tggacTATGTTGCTCTAGCATGGGGTACAAAGCCAGGCAGAGAGCGTGGGACTGCAGCTCAGATGTGCCCTTGCAGCCAGCAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 615200 311 + 6255621 ----agaaaagaaatgggcgcaa-ttaattgtaat-atat--tttatttaaatgaatatattaaaa---t--------------------------------tatcatttaaatgtataatcaatatgaacatgattgagacattttacatgc---------------------------------------------------------tttttt-tggtattaagtcttcaaaat----cctgtgtgaattcacactt-ac-agcacatctcaattggggccagccacattttaagtgctgagtcgccgcgtgtgcctcatggccgt-cacac---------tggacaatgTTGCTCTAGCATGGGGTACAAAGCCAGGCAGAGAGCGTGGGACTGCAGCTCAGATGTGCCCTTGCAGCCAGTAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641084 313 - 8658521 ----agaaaagaaatgaacgcaa-ttaattgtaat-atat--tttatttaaataaatatattaaaa---t--------------------------------tatcatttaaatgtacaatcaatacgaacatgattgagacattttacatgct------------------------------------------------------attttttt-tggtattaagtcttcaaaat----cctgtgtgaattcacactt-ac-agcacatctcaattggggccagccacattttaagtgctgagtcgccgcgtgtgcctcatggccat-cgcac---------tggacaacgTTGCTCTAGCAT-GGGTACAAAGCCAGGCAGAGAGCGTGGGACTGCAGCTCAGATGTGCCCTTGCAGCCAGCAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114845185 314 + 124281992 ----aaaaaagaaatgggcacaa-ttaatagtaataacgtgttttatttaactgaatatattaaaa---t--------------------------------tctcatctgaatgtgtaatcaataggaacatgaatgagacattttacatgc---------------------------------------------------------tttttt-tggtactaagtcttcaaaac----ctggt-tgaattcacacttaac-agcatatcccaattgcggctggccgcattttaagtgctcagtagccgcgtgtgcctcgtggccgc-tgcac---------tgggcagtgtagCTCTAGCATGGGGTGCGAGGCCAGGCAGAGAGCGTGGGGCTGCGGCTCAGATGTGCCCTTGCAGCCAGCAGG i calJac3.chr9 I 326 I 31 s saiBol1.JH378194 487465 309 - 9212255 ----agaaaagaaatgggcacaa-ttaattgtaataacatg--ctatttaactgaatatattaaaa---t--------------------------------t---atttgaatatataatcaataggaacacgattgagacattttacatgc--------------------------------------------------------ttttttt-tgatattaagtcttcaaaac----ctaat-tggagtcacactt-ac-agcatatctcagttgcagctagccacattttaagtgctgagtagcagcatgtgcctcgtggccac-tgcac---------tggatggtgtagCTCTAGCATGGGGCGCAAGGCTGGGCAGAGAGCATGGGGCTGTGGCTCAGATGTGCCCTTGCAGCCAGCAGG i saiBol1.JH378194 C 0 I 6 s cebCap1.NW_016107484v1 2906313 313 + 4466143 ----agaaaagaaatgggcgcaa-ttaattgtaataacgtgttttatttaattgaatatattaaaa---t--------------------------------tatcatttgaatgtataatcaataggaacacgattgagacattttacatgc---------------------------------------------------------tttttt-gggtattaagtcttcaaaat----ctaat-tggattcacactt-ac-agcatatctcagttgcggctagctacattttaagtgctgagtagccacgtgtgcctcgtggccac-cgcac---------tggacagtgtagCTCTAGCATGGGGTGTGAGGCCGGGCAGAGAGCGTGGGGCTATGGCTCAGATGTACCCTTGCAGCCAGCAGG i cebCap1.NW_016107484v1 C 0 I 45 s aotNan1.NW_018491581v1 1609257 315 + 5364348 ----agaaaagaaatgggcgcaa-ttaattgtaataacgtattttatttaactgaatatattaaaa---t--------------------------------gatcatttgaatgtataatcaataggaacatgattgagacattttacatgc-------------------------------------------------------tttttttt-tggtattaagtcttcagagt----ctgat-tgaattcacactt-ac-agcatatctcagttgcagctagccacattttaagtgctgagtagctgcgtgtgcctcgtggccac-ggcac---------tggacagtgtagCTCTAGCATGGGGTGCGAGGCCAGGCAGAGAGCGTGGGGCTGCGGCTCGGATGTGCCCTTGCAGCCAGCAGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4331903 281 + 7922563 ----agaaaagaaacaggtataa-ttggttttagtaacat--tttatttaaccgaatatttaaaaa---a--------------------------------tgtcattgtaatgtata---------aagatcattgagatattttacatggt------------------------------------------------------tttttttt-ttgtattaaatctttgaaat----cctgtatgaattcatacta-----gcacaccttcattgggtcgagccaccttttaaa-----------------ggcctcatggccac-catac---------tagacagtgtagTGCTAGCTCTGGGCATGAAGCTAGACAGATAGCTTGGGTTGCAAACTCACATGTACCTTCATGTACA----- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33180458 378 - 38964690 ----cggaaagaaacagataaaagttaaaattaataatat--tt------actcaacacattaaaa---tatcatttcaaaaaaagtaaaaaataaaataaatatcatttcaacatgtaattaatacaaac---attgagatatctcacatggggttttaaaatttttttggaaaaataaaaataaaaaaataaataaataaaaataaaatttttt-tggtattatatcttcaaagtcctgcctgtgtgaatttaccctt-gcttgcccatctcagcttggactggccacacttcacatgctcaatagccacacaggcctactgaccttccatac---------tggacaacgTGGCTCCAGGAC------TGAGGCCAGGCAGATGACTTGGGCTTGCAG-----------ACTCATGCTCAG---- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 867348 289 - 1116856 aaaataaaaagaaatgggtggaa-ttaattttaataacat--attattgaattcaagatattaaaagtgc--------------------------------tgtcatttcaacatgtagtcaatat---------------atttaacattt---------------------------------------------------------tttttt-ttctatattgtcttcagtac----tctgtgagaattcac-----at---------------------agccacatttcaagggcttgatagccacatgtgactagtggctgc-catattggacaAAGTGGACAAGGTAGCTCTAGAATTGCATGTGAAGGTAGACAGGTGACTAgggctgccaactcaaatctgcattcatggcaggtagg i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I a score=108634.000000 s hg38.chr12_KI270834v1_alt 99286 23 + 119498 CCATGGCAGTGAGTGA-TGAGGCT s panTro5.chr12 127384931 23 + 137163284 CCGTGGCAGTGAGTGA-GGAGGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735232 23 + 135337776 CCATGGCAGTGAGTGA-GGAGGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8248789 23 - 8369578 CCATGGCAGTGAGTGA-TGAGGCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97906877 23 + 106955855 CCATGGCAGTGAGTGA-TGAGGCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124021945 23 + 133663169 CCATGACAGTGAGTGA-TGAGGCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270142 23 + 137757926 CCATGACAGTGAGTGA-TGAGGCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10668661 23 - 16319837 CCATGACAGTGAGTGA-TGAGGCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12292575 23 + 20526591 CCATGGCAGCGAGTGA-TGAGGCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119263944 23 + 128539186 CCATGGCAGTGAGTGA-TGAGGCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 615511 23 + 6255621 CCATGGCAGCGAGTGA-TGAGGCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641397 23 - 8658521 CCATGGCAGTGAGTGA-TGAGGCA i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 487780 17 - 9212255 CCCTGGCCCTGGGTC-------CT i saiBol1.JH378194 I 6 C 0 s aotNan1.NW_018491581v1 1609572 18 + 5364348 -Gctggtccctgggca-----gct i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4332184 1 + 7922563 ---T-------------------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33180836 22 - 38964690 --ATGGCAGCgagtgagcgaggca i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 867637 24 - 1116856 tggcggaaacaagtaaatcaggct i dasNov3.JH568189 C 0 I 36 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I e cebCap1.NW_016107484v1 2906626 45 + 4466143 I e calJac3.chr9 114845499 31 + 124281992 I a score=25012.000000 s hg38.chr12_KI270834v1_alt 99309 4 + 119498 GGGT s panTro5.chr12 127384954 4 + 137163284 GGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735255 4 + 135337776 GGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8248812 4 - 8369578 GGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97906900 4 + 106955855 GGAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124021968 4 + 133663169 GGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270165 4 + 137757926 GGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10668684 4 - 16319837 GGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12292598 4 + 20526591 GGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119263967 4 + 128539186 GGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 615534 4 + 6255621 GGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641420 4 - 8658521 GGGT i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 487797 3 - 9212255 GGT- i saiBol1.JH378194 C 0 I 4 s aotNan1.NW_018491581v1 1609590 4 + 5364348 ggtc i aotNan1.NW_018491581v1 C 0 I 2 s canFam3.chr26 33180858 4 - 38964690 gggt i canFam3.chr26 C 0 C 0 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I e dasNov3.JH568189 867661 36 - 1116856 I e otoGar3.GL873618 4332185 0 + 7922563 C e cebCap1.NW_016107484v1 2906626 45 + 4466143 I e calJac3.chr9 114845499 31 + 124281992 I a score=9100.000000 s hg38.chr12_KI270834v1_alt 99313 1 + 119498 G s panTro5.chr12 127384958 1 + 137163284 G i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735259 1 + 135337776 G i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8248816 1 - 8369578 G i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97906904 1 + 106955855 G i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124021972 1 + 133663169 G i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270169 1 + 137757926 G i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10668688 1 - 16319837 G i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12292602 1 + 20526591 G i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119263971 1 + 128539186 G i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 615538 1 + 6255621 G i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641424 1 - 8658521 G i colAng1.NW_012116043v1 C 0 C 0 s otoGar3.GL873618 4332185 1 + 7922563 g i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33180862 1 - 38964690 g i canFam3.chr26 C 0 C 0 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I e dasNov3.JH568189 867661 36 - 1116856 I e aotNan1.NW_018491581v1 1609594 2 + 5364348 I e cebCap1.NW_016107484v1 2906626 45 + 4466143 I e saiBol1.JH378194 487800 4 - 9212255 I e calJac3.chr9 114845499 31 + 124281992 I a score=31986.000000 s hg38.chr12_KI270834v1_alt 99314 3 + 119498 GGG s panTro5.chr12 127384959 3 + 137163284 GGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735260 3 + 135337776 GGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8248817 3 - 8369578 GGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97906905 3 + 106955855 GGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124021973 3 + 133663169 GAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270170 3 + 137757926 GAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10668689 3 - 16319837 GAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12292603 3 + 20526591 GAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119263972 3 + 128539186 GAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 615539 3 + 6255621 GAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641425 3 - 8658521 GAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114845530 3 + 124281992 GGG i calJac3.chr9 I 31 C 0 s saiBol1.JH378194 487804 3 - 9212255 GGG i saiBol1.JH378194 I 4 C 0 s cebCap1.NW_016107484v1 2906671 3 + 4466143 ggg i cebCap1.NW_016107484v1 I 45 C 0 s aotNan1.NW_018491581v1 1609596 3 + 5364348 tgg i aotNan1.NW_018491581v1 I 2 C 0 s otoGar3.GL873618 4332186 3 + 7922563 ggg i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33180863 3 - 38964690 ggg i canFam3.chr26 C 0 I 145 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I e dasNov3.JH568189 867661 36 - 1116856 I a score=605290.000000 s hg38.chr12_KI270834v1_alt 99317 59 + 119498 TCCTGGTCCCTgggcagctgcccttagctcctgctgactgataccaggtgccattggga s panTro5.chr12 127384962 59 + 137163284 TCCTGGTCCCTgggcagctgcccttagctcctgctgactgataccaggtgccattggga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735263 59 + 135337776 TCCTGGTCCCTgggcagctgcccttagctcctgctgactgataccaggtgccattggga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8248820 59 - 8369578 TCCTGGTCCCTgggcagctgcccttagctcctgctgactgataccaggtgccattggga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97906908 59 + 106955855 TCCTGGTCCCTgggcagcggcccttagctcctgctgactgataccaggtgccactagga i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124021976 59 + 133663169 TCCTGGTCCCTgggcagctgcccttagctcctgctgactgataccatgttccactggga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270173 59 + 137757926 TCCTGGTCCCTgggcagctgcccttagctcctgctgactgataccatgttccactggga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10668692 59 - 16319837 TCCTGGTCCCTgggcagctgcccttagctcctgctgactgataccatgtgccactggga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12292606 59 + 20526591 TCCTGGTCCCTgggcagctgcccttagctcctgctgactgataccatgtgccactggga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119263975 59 + 128539186 TCCTGGTCCCTgggcagctgcccttagctcctgctgactgataccatgtgccactggga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 615542 59 + 6255621 TCCTGGTCCCTgggcagctgcccttagctcctgctgactgataccatgtgccactggga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641428 59 - 8658521 TCCTGGTCCCTgggcagctgcccttagctcctgctgactgataccatgtgccactggga i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114845533 59 + 124281992 TCCTGGTCCCTgggcagctgcctttagctcctgctgactgataccacgtgctgttggga i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 487807 59 - 9212255 TCCTGGTCCCTgggcagctgcccttagctcctgctgactgataccacgtgctgttggga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2906674 59 + 4466143 tcctggtccctgggcagctgcccttagctcctgctgactgataaaatgtgctgtcggga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1609599 59 + 5364348 tcctgggccctggacagctgcctttagctcctgctgactgataccgcgtgccattggga i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4332189 48 + 7922563 ttgcaaactcgg---atgtaccttca--------tggccagcagcaggccacatgagtg i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I e dasNov3.JH568189 867661 36 - 1116856 I e canFam3.chr26 33180866 145 - 38964690 I a score=197607.000000 s hg38.chr12_KI270834v1_alt 99376 17 + 119498 acccacagtggctggat s panTro5.chr12 127385021 17 + 137163284 acccacagtggctggat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735322 17 + 135337776 acccacagtggctggat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8248879 17 - 8369578 acccacagtggctggat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97906967 17 + 106955855 accaacactggctggat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124022035 17 + 133663169 acccacagtggctggat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270232 17 + 137757926 acccacagtggctggat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10668751 17 - 16319837 acccacagtggctggat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12292665 17 + 20526591 acccacagtggctggat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119264034 17 + 128539186 acccacagtggctggat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 615601 17 + 6255621 acccacagtggctggat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641487 17 - 8658521 acccacagtggctggat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114845592 17 + 124281992 acccaaagtggctggat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 487866 17 - 9212255 acccaaagtggctggat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2906733 17 + 4466143 acccaaagtggctgggt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1609658 17 + 5364348 acccaaagtggctggat i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4332237 17 + 7922563 agtgaaagaggctggat i otoGar3.GL873618 C 0 I 167 s dasNov3.JH568189 867697 17 - 1116856 atccacaggggcagcct i dasNov3.JH568189 I 36 C 0 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I e canFam3.chr26 33180866 145 - 38964690 I a score=284374.000000 s hg38.chr12_KI270834v1_alt 99393 25 + 119498 cctctga---ctctgaaagaagctagga s panTro5.chr12 127385038 25 + 137163284 cctctga---ctctgaaagaagctagga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735339 25 + 135337776 cctctga---ctctgaaagaagctagga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8248896 25 - 8369578 cctctga---ctctgaaaggagctagga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97906984 25 + 106955855 cctctga---ttctgaaagaagctagga i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124022052 25 + 133663169 cctctga---ctctgaaagaagctagga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270249 25 + 137757926 cctctga---ctctgaaagaagctagga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10668768 25 - 16319837 cctctga---ctctgaaagaagctagga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12292682 25 + 20526591 cctctga---ctctgaaagaagctagga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119264051 25 + 128539186 cctctga---gtctgaaagaagctagga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 615618 25 + 6255621 cctctga---ctctgaaagaagctagga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641504 25 - 8658521 cctctga---ctctgaaagaagctagga i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114845609 25 + 124281992 cctctga---ctccgaaagaagctagga i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 487883 25 - 9212255 cctttga---cactgaaagaagctagga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2906750 25 + 4466143 cctctga---ctctgaaagaagctagga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1609675 25 + 5364348 cctctga---ctctgaaagaagctagga i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 867714 28 - 1116856 cttctagctcctctgatggatgccagga i dasNov3.JH568189 C 0 I 119 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I e canFam3.chr26 33180866 145 - 38964690 I e otoGar3.GL873618 4332254 167 + 7922563 I a score=2278232.000000 s hg38.chr12_KI270834v1_alt 99418 239 + 119498 cttcagattttttcctgaaatatcccaatatctttgtgtttgcaatgaattttaaaaCGCACATCTGggtcaggtgcggtggctcacacctgtaatcccagcacttcaggaagctgatgtgggaggatcgcttgaggccaggagttcgagacccagcctgggcaacatagtgagatactgcctctaaaaaataaaa--aata---aaaaagaattagccaggcgtggtggtgcacacctgtagt s panTro5.chr12 127385063 239 + 137163284 cttcagattttttcctgaaatatcccagtatctttgtgtttgcaatgaattttaaaaCGCACATCTGggtccggtgcggtggctcacacctgtaatcccagcacttcaggaagctgatgtgggaggatcgcttgaggccaggagttcgagacccagcctgggcaacatagtgagatactgcctctaaaaaataaaa--aata---aaaaaaaattagccaggcgtggtggcgcacacctgtagt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735364 238 + 135337776 cttcagattttttcctgaaatatcccagtatctttgtgtttgcaatgaattttaaaaCGCACATCTGggtccggtgcggtggctcacacctgtaatcccagcacttcaggaagctgatgtgggaggatcgcttgaggccaggagttcgagacccagcctgggcaacatagtgagatactgcctctaaaaaataaaa--aaca---aaaaa-aattagccaggcgtggtggcgcacacctgtagt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8248921 238 - 8369578 cttcagatttgttcctgaaatatcccaatatctttgtgtttgcaatgaattttaaaaCGCACATCTGggtcaggtgcggtggctcacacctgtaatcccagcacttcaggaagctgatgtgggaggatcgcttgaggccaggagttcgagacccagcctgggcaacatagtgagatactgcctctaaaaaataaaa--aatt---aaaaaaaattagccaggc-tggtggcgcatacctgtagt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97907009 238 + 106955855 cttcagatttttacctgaaatatcccaatatctttttgttggcaatgaattttaaaatGCACATCTGggtcaggtgcggtggctcacacctgtaatcccagcacttcaggaggccgatgtgggaggatcgcttgaggccaggagttcgaga-ccagcctgggcaacatagtgagatactgcctctaaaaagtaaaa--agta---aaaaaaaattagccaggcgtggtggtgcacacctgtagt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124022077 240 + 133663169 cttcagatttttacctgaaatatcccagtatctttgtgttggcaatgaattttaaaaCGCACGTCTGggtcaggtgcagtggctcatacctgtaatcccagcacttcaggaggctgatgtgggaggatcgcttgaggccaggagtttgaga-ccagcctgggcaatatagcgagatactgcctctaaaaaataaaa--aataat-aaaaaaaatgagccagctgtggtggcgcacacctgtagt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270274 240 + 137757926 cttcagatttttacctgaaatatcccagtatctttgtgttggcaatgaattttaaaaCGCACGTCTGggtcaggtgcagtggctcatacctgtaatcccagcacttcaggaggctgatgtgggaggatcgcttgaggccaggagtttgaga-ccagcctgggcaatatagcgagatactgcctctaaaaaataaaa--aataat-aaaaaaaatgagccagctgtggtggcgcacacctgtagt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10668793 240 - 16319837 cttcagatttttacctgaaatatcccagtatctttgtgttggcaatgaattttaaaaCGCACGTCTGggtcaggtgcagtggctcatacctgtaatcccagcacttcaggaggctgatgtgggaggatcgcttgaggccaggagtttgaga-ccagcctgggcaatatagcgagatactgcctctaaaaaataaaa--aataat-aaaaaaaatgagccagctgtggtggcgcacacctgtagt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12292707 241 + 20526591 cttcagatttttacctgaaatatcccagtatctttgtgttggcaatgaattttaaaaCGCACGACTGggtcaggtgcagtggctcatacctgtaatcccagcacttcaggaggctgatgtgggaggatcgcttgaggccaggagttcgaga-ccagcctgggcaatatagcaagatactgcctctaaaaaataaaa--aataataaaaaaaaatgagccagctgtggtggcgcacacctgtagt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119264076 241 + 128539186 cttcagatttttacctgaaatatcccagtatctttgtgttggcaatgaattttaaaGCGCACGTCTGggtcaggtgcagtggctcatacctgtaatcccagcacttcaggaggctgatgtgggaggatcgcttgaggccaggagttcgaga-ccagcctgggcaacatagtgagatactgcctctaaaaaataaaaataaaaa--aaaaaaaatgagccagctgtggtggcacacacctgtagt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 615643 239 + 6255621 cttcagatttttacctgaaatatcccagtatctttgtgttggcaatgaattttaaaaCGCACGTCTGggtcaagtgcagtggctcatacctgtaatcccagcatttcaggaggctgatgtgggaggatcgcttgaggccaggagttcgaga-ccagcctgggcaacatagcgagatactgcctctaaaaaataaaa--aataa--aaaataaatgagccagctgtgctggcgcacacctgtagt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641529 234 - 8658521 cttcagatttttacctgaaatatccctgtatctttgtgttggcaatgaattttaaaaCACACGTCTGggtcaggtgcagtggctcatacctgtaatcccagcacttcaggaggctgatgtgggaggatcgcttgaggccaggagttcgaga-ccagc-----caacatagcgagatactgcctctaaaaaataaaa--aagaa--aaaagaaatgagccggctgcggtggtgcacacctgtagt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114845634 230 + 124281992 cttcagatttttacctggaatctcccaatatttttgtgttggcaatgaattttaaaatACATATCTGggtcaagtgcggtggctcacacctgcaatcccagcacttcaggaggctgatgcgggaggttcgcttgaggccaggagtttgagg-ccagcctgggcaacgtaacgagacactgcctc-------taaaa--aat----aaaaaaaattagccaggtgtggtgatgcacacctgtagt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 487908 236 - 9212255 cttcagctttttacctgaaatctcccaatatttttgtgttggcagtgaattttaaaatGCATATCTGAgtcaagtgtggtggctcacacctgcaatcccag-acttcaggaggctgatgcaggaagttcgcttgaggctaggagtttgagg-ccagcctgggcaacatagcaagacaccacctctaaaaaataaaa--aat----aaaaaaagttagccaggcgtggtggtgcacacctgtagt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2906775 237 + 4466143 cttcagatttttacctgaaatctcccaatatttttgtgttggcaatgaattttaaaatGCATATCTGggtcaagtgcggtggctcacacctgtaatcccagcgcttcaggaggctgttgcgggaggttcgcttgaggccaggagtttgagg-ccagcctgggcaacatagcaagacaccgcctctaaaaaataaaa--aat----aaaaaaaattagccaggtgtggtggtacacacctatagt i cebCap1.NW_016107484v1 C 0 I 62 s aotNan1.NW_018491581v1 1609700 237 + 5364348 cttcagatttttacctgaaatctcccaatatttttgtgttggcaatgaattttaaaatGCATATCTGggtcaagtgcggtggctcacacctgcaataccagcacttcaggaggctgatgcgggaggttcgcttgaggccaggagtttgagg-ccagactgggcaacataacaagacaccgcctctaaaaaataaaa--aat----aaaaaaaattagccaggcgtggtggtgcacacctgtagt i aotNan1.NW_018491581v1 C 0 I 120 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I e dasNov3.JH568189 867742 119 - 1116856 I e canFam3.chr26 33180866 145 - 38964690 I e otoGar3.GL873618 4332254 167 + 7922563 I a score=161503.000000 s hg38.chr12_KI270834v1_alt 99657 29 + 119498 caagctactaaggaagctgaggtgggagg s panTro5.chr12 127385302 29 + 137163284 caagctactaaggaagctgaggtgggagg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735602 29 + 135337776 caagctgctaaggaagctgaggtgggagg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8249159 29 - 8369578 caagctactgaggaagctgaggtgggagg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97907247 29 + 106955855 caagctactaaggaagctgaggtgggagg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124022317 29 + 133663169 caagctactaaggaagctgaggtgggagg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270514 29 + 137757926 caagctactaaggaagctgaggtgggagg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669033 29 - 16319837 caagctactaaggaagctgaggtgggagg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12292948 29 + 20526591 caagctactaaggaagctgaggtgggagg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119264317 29 + 128539186 caagctactaaggaagctgaggtgggagg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 615882 29 + 6255621 caagctactaaggaagctgaggtgggaga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641763 29 - 8658521 caagctactaaggaagctgaggtgggagg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114845864 4 + 124281992 ------------GAAG------------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 488144 4 - 9212255 ------------GAAG------------- i saiBol1.JH378194 C 0 C 0 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I e dasNov3.JH568189 867742 119 - 1116856 I e canFam3.chr26 33180866 145 - 38964690 I e otoGar3.GL873618 4332254 167 + 7922563 I e aotNan1.NW_018491581v1 1609937 120 + 5364348 I e cebCap1.NW_016107484v1 2907012 62 + 4466143 I a score=590185.000000 s hg38.chr12_KI270834v1_alt 99686 122 + 119498 attgcttgagcccaagagtttgaggctgcagtgagctgtgatagtaccactgtactccagcctgggcaacagagtgagattatatatttcaatttaaaaaaaaa----------aaaaaaaaagaaaaagaa s panTro5.chr12 127385331 118 + 137163284 attgcctgagcccaagagtttgaggctgcagtgagctgtgatagtaccactgtactccagcctgggcaacagagtgagattatatctttcaattt----aaaaa----------aaaaaaaaagaaaaagaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735631 117 + 135337776 attgcttgagcccaagagtttgaggctgcagtgagctgtgatagtaccactgtactccagcctgggcaacagagtgagattatatctttcaatt-----aaaaa----------aaaaaaaaagaaaaagaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8249188 118 - 8369578 attgcttgagcccaagagtttgaggctgcagtgagctgtgatagtaccactgtactccagcctgggcaacagagtgagattatatctttcaattt----aaaaa----------aaaaaaaaagaaaaagaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97907276 109 + 106955855 attgcttgagcccaagagtttgaggcttcagtgagctatgatagtaccactatactccagcctgggcaacagagtgagattatatctttcaatt-----aaaaa----------aaaaaaaaag-------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124022346 115 + 133663169 atggcttgagcctgagagtttgaggctgcagtgagctatgatagtaccactgtactccagcctgggcaacagagtgaaattatatctctcaatt-----aaaaa------------agaaaaagaaaaagaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270543 115 + 137757926 atggcttgagcctgagagtttgaggctgcagtgagctatgatagtaccactgtactccagcctgggcaacagagtgaaattatatctctcaatt-----aaaaa------------agaaaaagaaaaagaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669062 115 - 16319837 atggcttgagcctgagagtttgaggctgcagtgagctatgatagtaccactgtactccagcctgggcaaaagagtgaaattatatctctcaatt-----aaaaa------------agaaaaagaaaaagaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12292977 118 + 20526591 atggcttgagcctgagagtttgaggctgcagtgagctatgatagtaccactgtactccagcctgggcaacagagtgaaattatatctctcaattaaa--aaaaa------------agaaaaagaaaaagaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119264346 113 + 128539186 atggcttgaacccgagagtttgaggcttcagtgagctatgatagtaccactgtactccagcctgggcaacagagtgagattatatctctcaatt-----aaaaa--------------aaaaagaaaaagaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 615911 127 + 6255621 atggcttgagcccgagagtttgaggctgcagtgagctatgatagtaccactgtactccagcctgggcaacagagtgaaattatatctctcaatt-----aaaaaagaaaaagaaaaagaaaaagaaaaagaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641792 117 - 8658521 atggcttgagcctgagagtctgaggctgcagtgagctatgatagtaccactgtactccagcctgggcaacagagtgagattgtatctctcaatt-----aaaaa----------aaaaaaaaagaaaaagaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114845868 50 + 124281992 -----------------------------------------------------------GCCTGGGCAACAGAGTAAGATGCTATCTCTAAATT-----TAAAA--------------AAGAAGAAAA---- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 488148 50 - 9212255 -----------------------------------------------------------GCCTGGACAACAGAGTAAGATTCCATCTCTAAATT-----TAAAA--------------AAGAAGAAAA---- i saiBol1.JH378194 C 0 C 0 s canFam3.chr26 33181011 41 - 38964690 attgctcaagcctgat-------------------------------------------gtgttggcaac---------tcattttcaaaaat--------------------------------------- i canFam3.chr26 I 145 C 0 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I e dasNov3.JH568189 867742 119 - 1116856 I e otoGar3.GL873618 4332254 167 + 7922563 I e aotNan1.NW_018491581v1 1609937 120 + 5364348 I e cebCap1.NW_016107484v1 2907012 62 + 4466143 I a score=80529.000000 s hg38.chr12_KI270834v1_alt 99808 16 + 119498 aaaacccacacacaaa s panTro5.chr12 127385449 16 + 137163284 aaaaCCCACACACAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735748 16 + 135337776 aaaaCCCACACACAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8249306 16 - 8369578 aaaaCCCACACACAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97907385 14 + 106955855 -aaaCCCACACACAA- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124022461 15 + 133663169 aaaaCCCACACACAA- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270658 15 + 137757926 aaaaCCCACACACAA- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669177 15 - 16319837 aaaaCCCACACACAA- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12293095 15 + 20526591 aaaaTCCACATACAA- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119264459 15 + 128539186 aaaaCCCACACACAA- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616038 15 + 6255621 aaaACCCACACACAA- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641909 15 - 8658521 aaaaCCCACACACAA- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114845918 8 + 124281992 -AAACCCAC------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 488198 8 - 9212255 -AAACCCAC------- i saiBol1.JH378194 C 0 C 0 s otoGar3.GL873618 4332421 10 + 7922563 aatgcccaca------ i otoGar3.GL873618 I 167 C 0 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I e dasNov3.JH568189 867742 119 - 1116856 I e canFam3.chr26 33181052 0 - 38964690 C e aotNan1.NW_018491581v1 1609937 120 + 5364348 I e cebCap1.NW_016107484v1 2907012 62 + 4466143 I a score=83521.000000 s hg38.chr12_KI270834v1_alt 99824 15 + 119498 acacaaaactcaaaa s panTro5.chr12 127385465 15 + 137163284 ACACAGAACTCAAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735764 15 + 135337776 ACACAAAACTCAAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8249322 15 - 8369578 ACACGAAACTCAAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97907399 9 + 106955855 ------AACTCAAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124022476 9 + 133663169 ------AACTCAAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270673 9 + 137757926 ------AACTCAAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669192 9 - 16319837 ------AACTCAAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12293110 9 + 20526591 ------AACTCAAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119264474 9 + 128539186 ------AACTCAAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616053 9 + 6255621 ------AACTCAAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641924 9 - 8658521 ------AACTCAAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114845926 15 + 124281992 ACATAAAACTCAAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 488206 15 - 9212255 ACATAAAACTCAAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2907074 15 + 4466143 ACATAAAACTCAAAA i cebCap1.NW_016107484v1 I 62 C 0 s otoGar3.GL873618 4332431 3 + 7922563 ------------aaa i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I e dasNov3.JH568189 867742 119 - 1116856 I e canFam3.chr26 33181052 0 - 38964690 C e aotNan1.NW_018491581v1 1609937 120 + 5364348 I a score=304562.000000 s hg38.chr12_KI270834v1_alt 99839 29 + 119498 ctcaaGATGTGGACCA-TTCA-----------GGACACGCC s panTro5.chr12 127385480 29 + 137163284 CTCAAGATGTGGACCA-TTCA-----------GGACACGCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735779 29 + 135337776 CTCAAGATGTGGACCA-TTCA-----------GGACACGCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8249337 29 - 8369578 CTCAAGATGTGGACCA-TTCA-----------GGACACGCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97907408 29 + 106955855 CTCAAGATGTGGACCA-TTCA-----------GGACACGCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124022485 29 + 133663169 TTCAAGATGTGGACCA-TTCA-----------GGACACACC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270682 29 + 137757926 TTCAAGATGTGGACCA-TTCA-----------GGACACACC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669201 29 - 16319837 TTCAAGATGTGGACCA-TTCA-----------GGACACACC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12293119 29 + 20526591 TTCAAGATGTGGACCA-TTCA-----------GGACACACC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119264483 29 + 128539186 TTCAAGATGTGGACCA-TTCA-----------GGACACACC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616062 29 + 6255621 TTCAAGATGTGGACCA-TTCA-----------GGACACACC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641933 29 - 8658521 TTCAAGATGTGGACCA-TTCA-----------GGACACACC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114845941 29 + 124281992 CTCAAGACGTGCACCA-TCCA-----------GGACACGCC i calJac3.chr9 C 0 I 14 s saiBol1.JH378194 488221 29 - 9212255 CTCAAGATGTGCACCA-TCCG-----------GGACACGCT i saiBol1.JH378194 C 0 I 14 s cebCap1.NW_016107484v1 2907089 29 + 4466143 CTCAAGATGTGCACCA-TCCG-----------GGACACGCC i cebCap1.NW_016107484v1 C 0 I 14 s otoGar3.GL873618 4332434 30 + 7922563 cacaACATGTAAACCATTTTA-----------GAACATGTG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33181052 29 - 38964690 cttgagaagtgggcca-ttca-----------ggacatacc i canFam3.chr26 C 0 I 14 s dasNov3.JH568189 867861 40 - 1116856 CTCTAGATATGGGTCA-TTCAGACTGGTTCATGGAGCTGTC i dasNov3.JH568189 I 119 I 2 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I e aotNan1.NW_018491581v1 1609937 120 + 5364348 I a score=403235.000000 s hg38.chr12_KI270834v1_alt 99868 36 + 119498 TGTGGAACCTCAGGGTTTTGTGCCATGGGCAGGCCC- s panTro5.chr12 127385509 36 + 137163284 TGTGGAACCTCAGGGTTTTGTGCCATGGGCAGGCCC- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735808 36 + 135337776 TGTGGAACCTCAGGGTTTTGTGCCATGGGCAGGCCC- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8249366 36 - 8369578 TGTGGAACCTCAGGGTTTTGTGCCATGGGCAGGCCC- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97907437 36 + 106955855 TGTGGAACCTCAGGGTTTTGTGCCATGGGCAGGCCC- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124022514 36 + 133663169 TGTGGAGCCTCAGGGTTTTGTGCCATGGGCACGCCC- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270711 36 + 137757926 TGTGGAGCCTCAGGGTTTTGTGCCATGGGCACGCCC- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669230 36 - 16319837 TGTGGAGCCTCAGGGTTTTGTGCCATGGGCACGCCC- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12293148 36 + 20526591 TGTGGAACCTCAGGGTTTTGTGCCATGGGCACGCCC- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119264512 36 + 128539186 TGTGGAACCTCAGGGTTTTGTGCCATGGCCACGCCC- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616091 36 + 6255621 TGTGGAACCTCAGGGTTTTGTGCCATGGGCACGCCC- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641962 36 - 8658521 TGTGGAACCTCAGGGTTTTGTGCCGTGGGCACGCCC- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114845984 36 + 124281992 TGTGGGACCTCAGGGTTTGGTGCCATGGGCAGGTCC- i calJac3.chr9 I 14 C 0 s saiBol1.JH378194 488264 36 - 9212255 CGTGGAACCTGAGGGTTTGGTGCTGTGGGCAGGTCC- i saiBol1.JH378194 I 14 C 0 s cebCap1.NW_016107484v1 2907132 36 + 4466143 TGTGGAACCTCAGGGTTTGCTGCCATGGGCAGGTCC- i cebCap1.NW_016107484v1 I 14 C 0 s aotNan1.NW_018491581v1 1610057 36 + 5364348 TGTGGAACCTCCGGGTTTGGTGCCATGGGCAGGTCC- i aotNan1.NW_018491581v1 I 120 C 0 s otoGar3.GL873618 4332464 17 + 7922563 TGTGGAATT-------------------GCACATCC- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33181095 36 - 38964690 tgtggaacctctgGGCTGTGTGCCAAGGGGATGTCC- i canFam3.chr26 I 14 C 0 s dasNov3.JH568189 867903 37 - 1116856 CGTGGACCCTCTGGGCTTTGAGCTGAAGGCTTGGGCC i dasNov3.JH568189 I 2 C 0 e micMur3.chr21 9492136 1422 - 31815103 I e mm10.chr5 124824595 1991 + 151834684 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I a score=112852.000000 s hg38.chr12_KI270834v1_alt 99904 8 + 119498 ACCTAGAG s panTro5.chr12 127385545 8 + 137163284 ACCTGGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735844 8 + 135337776 ACCTGGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8249402 8 - 8369578 ACCTGGAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97907473 8 + 106955855 ACCTGGAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124022550 8 + 133663169 ACCTGGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270747 8 + 137757926 ACCTGGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669266 8 - 16319837 ACCTGGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12293184 8 + 20526591 ACCTGGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119264548 8 + 128539186 ACCTGGAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616127 8 + 6255621 ACCTGGAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4641998 8 - 8658521 ACCTGGAG i colAng1.NW_012116043v1 C 0 I 118 s calJac3.chr9 114846020 8 + 124281992 ACCTGGAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 488300 8 - 9212255 ACCTGGAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2907168 8 + 4466143 ACCTGGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1610093 8 + 5364348 ACCTGGAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4332481 8 + 7922563 ACCTGGAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124826586 8 + 151834684 ACATGGAG i mm10.chr5 I 1991 C 0 s canFam3.chr26 33181131 8 - 38964690 ACCTTGAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 867940 4 - 1116856 ---AGGA- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9492136 1422 - 31815103 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I a score=2485670.000000 s hg38.chr12_KI270834v1_alt 99912 264 + 119498 GGCAAGCTGAGGTGCCCAGCTCAG----------CACAAACCAACTGAATC--------------GAG-----------------TGTG-AGG--GGGTA---------------------CAGAGAAGTCCCTGCCACTCAGGAGTTCCCCATC-AG-GGTGGGAGACGTGCATAGAAACTAGAA-TCTAAAACAGGGAAGAC-----TGCAACGAGCTATCCCAGAGGAGTGGTCAGAAGGTTCTGGACACC-----G-GAGGAGGCAGCGCTGATCAGACAGACCAGCCCCTGGTCTGGAGCTGTCCTCGCGGGAGAGTTTTCTGACTGTGTTTCTTTCA s panTro5.chr12 127385553 264 + 137163284 GGCAAGCTGAGGTGCCCAGCTCAG----------CACAAACCAACTGAATC--------------GAG-----------------TGTG-AGG--GGGTA---------------------CAGAGAAGTCCCTGCCACTCAGGAGTTCCCCATC-AG-GGTGGGAGACGTGCATAGAAACTAGAA-TCTAAAACAGGGAAGAC-----TGCAACGAGCTATCCCAGAGGAGTGGTCAGAAGGTTCTGGACACC-----G-GAGGAGGCAGCGCTGATCAGACAGACCAGCCCCTGGTCTGGAGCTGTCCTCGCGGGAGAGTTTTCTGACTGTGTTTCTTTCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125735852 264 + 135337776 GGCAAGCTGAGGTGCCCAGCTCAG----------CACAAACCAACTGAATC--------------GAG-----------------TGTG-AGG--GGGTA---------------------CAGAGAAGTCCCTGCCACTCAGGAGTTCCCCATC-AG-GGTGGGAGACGTGCATAGAAACTAGAA-TCTAAAACAGGGAAGAC-----TGCAACGAGCTATCCCAGAGGAGTGGTCAGAAGGTTCTGGACACC-----G-GAGGAGGCAGCGCTGATCAGACAGACCAGCCCCTGGTCTGGAGCTGTCCTCGCGGGAGAGTTTTCTGACTGTGTTTCTTTCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8249410 262 - 8369578 GGCAAGCTGAGGTGCCCAGCTCAG----------CACAAACCAACTGAATC--------------GAG-----------------TGTG-AGG--GGGT-----------------------AGAGAAGTCCCTGGCACTCAGGAGTTCCCCATC-AG-GGTGGGAGACGTGCATAGAAACTAGAA-TCTAAAACAGGGAAGAC-----TGCAACGAGCTATCCCAGAGGAGTGGTCAGAAGGTTCTGGACACC-----G-GAGGAGACAGCGCTGATCAGACAGACCAGCCCCTGGTCTGGAGCTGTCCTCGCGGGAGAGTTTTCTGACTGTGTTTCTTTCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97907481 265 + 106955855 GGCAAGCTGAGGTGTCCAGCTCAG----------CACAAGCCGACTGAACC--------------AAG-----------------TGTGCAGG--AGGTA---------------------CAGAGAAGTCCCTGTCACTCAAGAGTTCCCCATC-AG-GGTGGGAGACATGCATAGAAACTAGAA-TCTAAAGCAGGGAAGAC-----TGCAACGAGCTATCCCAGAGGAACGGTCAGAAGGTTCTGGACACA-----G-GAGGAGGCAGCGCTGATCAGACAGACCAGCCCCTGGTCTGGAGCTGTCCTCGCGGGAGAGTTTTCTGACTGTGTTTCTTTCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124022558 246 + 133663169 GGCAAGCTGAGGTGCCCAGCTCGG----------CACAAACCAACTGAATC--------------GAG-----------------CGTGCAGG--GGGTA----------------------------------------CAGGAGTTCCCCATC-AG-GGTGGGAGATGTGCATAGAAACTAGAA-TCTAAAACAGGGAAGAC-----TGCAAAGAGCTGTCCCAGGGGAGGGGTCAGAAGGTTCTGGACACT-----G-GAGGAGGCAGCACTGATCAGACAGACCAGCCCCTGGTCTGGAGCTGTCCTCCCGGGGCAGTTTTCTGACTGTGTTTCTTTCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128270755 246 + 137757926 GGCAAGCTGAGGTGCCCAGCTCGG----------CACAAACCAACTGAATC--------------GAG-----------------CGTGCAGG--GGGTA----------------------------------------CAGGAGTTCCCCATC-AG-GGTGGGAGATGTGCATAGAAACTAGAA-TCTAAAACAGGGAAGAC-----TGCAAAGAGCTATCCCAGGGGAGGGGTCAGAAGGTTCTGGACACT-----G-GAGGAGGCAGCACTGATCAGACAGACCAGCCCCTGGTCTGGAGCTGTCCTCCCGGGGCAGTTTTCTGACTGTGTTTCTTTCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669274 246 - 16319837 GGCAAGCTGAGGTGCCCAGCTCGG----------CACAAACCAACTGAATC--------------GAG-----------------CGTGCAGG--GGGTA----------------------------------------CAGGAGTTCCCCATC-AG-GGTGGGAGATGTGCATAGAAACTAGAA-TCTAAAACAGGGAAGAC-----TGCAAAGAGCTATCCCAGGGGAGGGGTCAGAAGGTTCTGGACACT-----G-GAGGAGGCAGCACTGATCAGACAGACCAGCCCCTGGTCTGGAGCTGTCCTCCCGGGACAGTTTTCTGACTGTGTTTCTTTCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12293192 246 + 20526591 GGCAAGCTGAGGTGCCCAGCTCAG----------CACAAACCAACTGAATC--------------GAG-----------------TGTGCAGG--GGGTA----------------------------------------CAGGAGTTCCTCATC-AG-GGTGGGAGACGTGCATAGAAACTAGAA-TCTAAAACAGGGAAGAC-----TGCAAAGAGCTATCCCAGGGGAGGGGTCAGAAGGTTCTGGACACT-----G-GAGGAGGCAGCACTGATCAGACAGGCCAGCCCCTGGTCTGGAGCTGTCCTCCCGGGACAGTTTTCTGACTGTGTTTCTTTCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119264556 246 + 128539186 GGCAAGCTGAGGTGCCCAGCTCAG----------CACACACCAACTGAATC--------------GAG-----------------CGTGCAGT--GGGTA----------------------------------------CAGGAGTTCCCCATC-AG-GGTGGGAGACGTGCATAGAAACTAGAA-TCTAAAACAGGGAAGAC-----TGCAAAGAGCTATCCCAGAGGAGGGGTCAGAAGGTTCTGGACACT-----G-GAGGAGGCAGCACTGATCAGACAGGCCAGCCCCTCGTCTGGAGCTGTCCTCCCGGGAGAGTTTTCTGACTGTGTTTCTTTCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616135 246 + 6255621 GGCAAGCTGAGGTGCCCAGCTCAG----------CACAAACCAACTGAATC--------------GAG-----------------CGTGCAGG--GGGTA----------------------------------------CAGGAGTTCCTCATC-AG-GGTGGGAGACGTGCATAGAAACTAGAA-TCTAAAACAGGGAAGAC-----TGCAAAGAGCTATCCCAGGGGAGGGGTCAGAAGGTTCTGGACACT-----G-GAGGAGGCAGCACTGATCAGACAGGCCAGCCCCTGGTCTGGAGCTGTCCTCCCGGGACAGTTTTCTGACTATGTTTCTTTCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4642124 244 - 8658521 GGCAAGCTGGGGTGCGCAGCTCAG----------CACAAACCAACCGAATC--------------GAG-----------------CGTGCAGG--GGGTG----------------------------------------CAGGAGTTCCCCATC-AG-GGTGGGAGACATGCATAGAAACTAGAA-TCTAAAAC--GGAAGAC-----TGCAAAGAGCTATCCCAGATGAGGGGTCAGAAGGTTCTGGACCCT-----G-GAGGAGGCAGCACTGATCAGACAGACCAGCCCCTGGTCTGGAGCTGTCCTCCTGGGAGAGTTTTCTGACTGTGTTTCTTTCA i colAng1.NW_012116043v1 I 118 C 0 s calJac3.chr9 114846028 244 + 124281992 GGCAAGCTGAGGTGCCCAGCTCAG----------CACAGACCGACTGAATC--------------CAG-----------------TGTGCAGG--GCGTG---------------------CAGAGAAGTCCCCGTCGTCCAGGAGTTCCCCATC-AG-GGTGGGAGACGTGTGTAGA-ACTGGAA-TCT--AGCAGGGAACAC-----TGCAAAGAGCTGTCCCAGAGGAGTGGTCAGAAGGTTCT------------G-GAGGAGAC--CGCTGATCAGA----CCAGCCTGTGGTCTGGAGCTGTCCTCCC-GGAAAGTTTTCTG----TGTTTCTTTCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 488308 244 - 9212255 GGCAAG-TGGGGCACCCAGCGCAG----------CACAAGCCGACTGAATC--------------GAG-----------------TGTGCAGG--GCGTG---------------------CAGAGAAGTCCCTGTCAGCCAGGAGTTCCCCATC-AG-GGTGGGAGACGTGCGTAGAGACTGGAA-TCTGAAGCAGGGAGGAC-----TGC--AGAGCGATCCCAGAGGAGTGGTCAGAAGGTTCT------------G-GAGGAGAC--CGCTGGTCAGA----CCAGCCCGTGGTCTGGAGCCGCCCTCCC-GGAAGGTTTTCTG----TGTTTCTTTCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2907176 248 + 4466143 GGCAAGCTGAGGCACCCAGCTCAG----------CACAAACCGACTGAATC--------------AAG-----------------TGTGCAGG--GCGTG---------------------CAGAGAAGTCCCTGTCATCCAGGAGTTGCCCATC-AG-GGTGGGAGACGTGCGTAGAAACTGGAA-TCTAAAGCAGGGAAGAC-----TACAAAGAGCTATCCCAGAGGGGTGGTCAGAAGGTTCT------------G-GAGGAGAC--CGCTGATCAGA----CCAGCCTGTGGTCTGGAGCTGTCCTCCCTGGACAGTTTTCTG----TGTTTCTTTCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1610101 248 + 5364348 GGCAAGCTGAGGCACCCAGCCCAG----------CACAAACCGACCGAATT--------------GAG-----------------TGTGCAGG--GCGTG---------------------CAGAGAAGTCCCTGTCATCCAGGAGTTCCCCATC-AG-GGTGGGAGACGTGCGTAGAAACTGGAA-TCTAAAGCAGGGAAGAC-----TGCAAAGAGCTATCCCAGAGGAATGGTCAGAAGGTTCT------------G-GAGGAGAC--CGCTGATCAGA----CCAGCCCGTGTTCTGGAGCTGTCCTCCCCGGAAAGTTTTCTG----TGTTTCTTTCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4332489 283 + 7922563 GGCAAGCCAAGGCAT-CGGCTCAG----------CACATATCCACTGACCCAGCACACATATGTGGCA-----------------TGTGCAAGTATGGGA---------------------CAGAGAAGGCCCTGTCATTCTGAAGTTTGCCATCTAG-GCTGAGAGATTTACACAGGAACTAGAT-TCTAAGACAAGGAAGGC---TGTGCAGAGAGCTATGCCAGAGGAAGCGTCAAAAGGATCTGGACCCA-----GAGAGGAGACAGTACTCACTAG-CAGGCTGGCCCCTAGCCTAGAGCCCTCTTCCTGGGAGGGCTTTCTAATTCCGTGTCTTTTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124826594 268 + 151834684 GGTAGGTCAAAGCGCCCAGCTCAA----------TACTTACCTGCTGAGAC--------------TAG-----------------TATTTTGT--GAGGATCATATGAGGTTAGACGGAGCCAGAGAGGTCCCTGCCACTGAGAAGGTCACCATC----------AGATCTCTGTGTGTACCAGGATTCTCAAAAAGTCAGGACAAACGTCTGAAGAGCTACGTGAGAGTCATAGTCACC---TTCTGGATGCTGAGGGG-GAGGGGGAGGGGAGGGAGGGA--------------GCCTGGCGCCGT--TCCGCAGACAGTTTCC--ATGTTCTTCCTTTTG i mm10.chr5 C 0 C 0 s canFam3.chr26 33181139 225 - 38964690 -----------GGGCCCCTGTCAGGAGGCATCCCCATGGATGTGCTGGGTT--------------GTG-----------------CT---AGG--GGATG---------------------CAGTGGGGCCCCTGTCCCCTAGGACTTCACCCTCTCG-TGTGTGATGCGTGCACAAACACTGGAC-TCTCA----------CC-----TGTGCAGAGCTATAGCAGAGGAACAGCCAGAAGGTTCTGGAAG-------G-GATGAGGC-----------GA-----------GTGTGCTGTGGCTGTCCTC-CATGAGGGCCCCC--ACGTTCTTTCCCTCA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 867944 280 - 1116856 GCCAGGCCGAGTCAC-CAGCTCAG----------GACAAATCCACTAGACC--------------CAACACCATGAGTACCAAGCTGAGCTGG--AGGGA-------------------GGCCGAGTGGTGCCTGCTGTTCAGGAGTTTACCATT-TGCTGTAGGAGATGCATGGACAAGCTGGAT-TCTAAAAC----CAGGC-----AGCAGAGCGCTCTATGGGAGAAAGAGCCGGAGGGGTTTTGACACTT----G-GAAGAGAGAGTGCTGCTGAGACTCGCTGGCCTG-GCCCTGGAGCTGCCCTCGTGGGAGGGGTTTCTCATTTCGTGTCTGTCA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9492136 1422 - 31815103 I e proCoq1.NW_012154285v1 6745966 1053 - 9870158 I a score=3826960.000000 s hg38.chr12_KI270834v1_alt 100176 196 + 119498 CCAGGTATGTGCAGCCCCCAATGATCAGCTTTGAAGCTA-TTTTTGAGCAGAGCACTCCACATTCGCCCATTGTGTTTATCCTGAGTCCTGGCTCCGACCCTGCCACTGATCTTATGAAATTAGCAGAGCGAAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG s panTro5.chr12 127385817 196 + 137163284 CCAGGTATGTGCAGCCCCCAATGATCAGCTTTGAAGCTG-TTTTTGAGCAGAGCACTCCACATTCGCCCGTTGTGTTTATCCTGAGTCCTGGCTCCGACCCTGCCACTGATCTTATGAAATTAGCAGAGCGAAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125736116 196 + 135337776 CCAGGTATGTGCAGCCCCCAATGATCAGCTTTGAAGCTG-TTTTTGAGCAGAGCACTCCACATTCGCCCGTTGTGTTTATCCTGAGTCCTGGCTCCGACCCTGCCACTGATCTTATGAAATTAGCAGAGCGAAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8249672 197 - 8369578 CCAGGTATGTGCAGCCCCCAATGATCAGCTTTGAAGCTGTTTTTTGAGCAGAGCACTCCACATTCGCCCATTGTGTTTATCCTGAGTCCTGGCTCCGACCCTGCCACTGATCTTATGAAATTAGCAGAGCGAAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97907746 196 + 106955855 CCAGGTATGTGCAGCCCCCAATGATCAGCTTTGAAGCTA-TTTTTGAGCAGAGCACTCCAAATTCGCCCATTGTGTTTATCCTGAGTCCTGGCTCTGACCCTGCCAGTGATCTTATGAAATTAGCAGAGCGAAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124022804 196 + 133663169 CCAGGTATGTACAGCCCCCAATGATCAGCTTTGAAGCTA-TTTTTGAGCAGAGCACTCCAAATTCGCCCATTGTGTTTATCCTGAGTCCTGGCTCTGACCCTGCCAGTGATCTTATGAAATTAGCAGAGCGAAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128271001 196 + 137757926 CCAGGTATGTACAGCCCCCAATGATCAGCTTTGAAGCTA-TTTTTGAGCAGAGCACTCCAAATTCGCCCATTGTGTTTATCCTGAGTCCTGGCTCTGACCCTGCCAGTGATCTTATGAAATTAGCAGAGCGAAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669520 196 - 16319837 CCAGGTATGTACAGCCCCCAATGATCAGCTTTGAAGCTA-TTTTTGAGCAGAGCACTCCAAATTCGCCCATTGTGTTTATCCTGAGTCCTGGCTCTGACCCTGCCAGTGATCTTATGAAATTAGCAGAGCGAAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12293438 196 + 20526591 CCAGGTATGTACAGCCCCCAATGATCAGCTTTGAAGCTA-TTTTTGAGCAGAGCACTCCAAATTCGCCCATTGTGTTTATCCTGAGTCCTGGCTCTGACCCTGCCAGTGATCTTATGAAATTAGCAGAGCGAAGTGGTTTTGGAGGAAATCGCCTGAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119264802 196 + 128539186 CCAGGTATGTACAGCCCCCAATGATCAGCTTTGAAGCTA-TTTTTGAGCAGAGCACTCCAAATTCGCCCATTGTGTTTATCCTGAGTCCTGGCTCTGACCCTGCCAGTGATCTTATGAAATTAGCAGAGCGAAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616381 196 + 6255621 CCAGGTATGTACAGCCCCCAATGATCAGCTTTGAAGCTA-TTTTTGAGCAGAGCACTCCAAATTCGCCCATTGTGTTTATCCTGAGTCCTGGCTCTGACCCTGCCAGTGATCTTATGAAATTAGCAGAGCGAAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4642368 196 - 8658521 CCAGGTATGTGCAGCCCCCAATGATCAGCTTTGAAGCTA-TTTTTGAGCAGAGCACTCCAAATTCGCCCATTGTGTTTATCCTGAGTCCTGGCTCTGACCCTGCCAGTGATCTTATGAAATTAGCAGAGCGAAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114846272 196 + 124281992 CCAGGTACGTGCAGCCCCCAATGATCAGCTTTGAAGCTA-TTTTTGAGCAGAGCACTCCAAATTCGCCGATCGTGTTTATCCTGAGTCCCGGCTCTGACCCTGCCAGTGATCTTATGAAATTGGCGGAGCGCAGTGGTTTTGGAGGAAACCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 488552 196 - 9212255 CCAGGTACGTGCAGCCCCCAATGATCAGCTTTGAAGCTA-TTTTTGAGCAGAGCACTCCAAATTCGCCCATTGTGTTTATCCTGAGTCCCGGCTCTGACCCTGCCAGCGATCTTATGAAATTAGCGGAGCGCAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2907424 196 + 4466143 CCAGGTACGTGCAGCCCCCAATGATCAGCTTTGAAGCTA-TTTTTGAGCAGAGCACTCCAAATTCGCCCATCGTGTTTATCCTGAGTCCCGGCTCTGACCCTGCCAGTGATCTTATGAAATTAGCGGAGCGCAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1610349 196 + 5364348 CCAGGTACGTGCAGCCCCCAATGATCAGCTTTGAAGCTA-TTTTTGAGCAGAGCACTCCAAATTCGCCCATCGTGTTTATCCTGAGTCCTGGCTCTGACCCTGCCAGTGATCTTATGAAATTAGCGGAGCGCAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTAATTTG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9493558 196 - 31815103 CCAGGTACGTGCAGCCGCCGATGATCAGCTTCGAGGCCA-TCTTCGAGCAGAGCACGCCAAACTCGCCCATCGTGTTCATCCTCAGTCCCGGCTCGGACCCCGCCAGCGACCTCATGAAACTGGCCGAGCGCAGCGGCTTTGGAGGAAACCGCCTCAAGTTCCTTGCGATGGGTCAAGGTCAGGAAAAGGTAATTTG i micMur3.chr21 I 1422 I 979 s proCoq1.NW_012154285v1 6747019 196 - 9870158 CCAGGTACGTGCAGCCCCCGATGATCAGCTTCGAGGCCA-TTTTCGAGCAGAGCTCACCAAACTCGCCCATCGTGTTCATCCTGAGTCCCGGCTCTGACCCTGCCAGCGACCTCATGAAACTAGCCGAGCGCAGCGGCTTCGGAGGCAACCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAGGAAAAGGTAATTTG i proCoq1.NW_012154285v1 I 1053 C 0 s otoGar3.GL873618 4332772 196 + 7922563 CCAGGTATGTGCAGCCCCCAATGATCAGCTTTGAGGCCA-TTTTTGAGCAGAGCACACCAAATTCACCTATCGTGTTCATCCTGAGTCCTGGCTCTGACCCTGCCAGTGATCTCATGAAATTAGCTGAGCGAAGTGGCTTTGGAGGAAATCGTCTCAAATTCCTTGCTATGGGTCAAGGTCAGGAAAAGGTAATTTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124826862 196 + 151834684 ACAGGTATGTGCAGCCCCCGATGATCAGCTTCGAAGCCA-TTTTTGAGCAGAGCACCCCCAATTCGCCCATCGTGTTCATCCTGAGCCCTGGCTCTGACCCCGCCAGTGACCTCATGAAGCTGGCTGAGCGGAGTGGCTTCGGGGGCACGCGTCTCAAGTTTCTTGCAATGGGTCAAGGCCAAGAAAAGGTAGCTGG i mm10.chr5 C 0 C 0 s canFam3.chr26 33181364 196 - 38964690 CTAGGTATGTGCAGCCCCCGATGATCAGCTTCGAAGCCA-TCTTTGAGCAGAGCACGCCAAACTCGCCCATTGTGTTCATCCTCAGTCCCGGCTCCAACCCTGCCAGTGACCTTATGAAATTAGCTGAGCGCAGTGGTTTTGGAGGAAACCGCCTCAAATTCCTTGCCATGGGTCAAGGTCAAGAAAAGGTAATTAG i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 868224 196 - 1116856 CCAGGTATGTGCAGCCCCCGATGATCAGCTTCGATGCCA-TTTTCGAGCAGAGTATGCCAACTTCACCCATTGTGTTCATCCTGAGTCCCGGCTCTGACCCTGCCAGCGATCTCATGAAGTTAGCTGAGCGAAGTGGCTTTGGAGGAAACCGCCTCAAATTCCTTGCCATGGGACAAGGTCAAGAAAAGGTAATTGG i dasNov3.JH568189 C 0 C 0 a score=22396.000000 s hg38.chr12_KI270834v1_alt 100372 3 + 119498 --TGG s panTro5.chr12 127386013 3 + 137163284 --TGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125736312 3 + 135337776 --TGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8249869 3 - 8369578 --TGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97907942 3 + 106955855 --TGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124023000 3 + 133663169 --TGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128271197 3 + 137757926 --TGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669716 3 - 16319837 --TGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12293634 3 + 20526591 --TGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119264998 3 + 128539186 --TGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616577 3 + 6255621 --TGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4642564 3 - 8658521 --TGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114846468 3 + 124281992 --TGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 488748 3 - 9212255 --TGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2907620 3 + 4466143 --TGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1610545 3 + 5364348 --TGG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6747215 3 - 9870158 --CTG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4332968 3 + 7922563 --CTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124827058 3 + 151834684 --TGG i mm10.chr5 C 0 I 284 s canFam3.chr26 33181561 2 - 38964690 --TG- i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 868420 3 - 1116856 TCC-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9493754 979 - 31815103 I a score=585610.000000 s hg38.chr12_KI270834v1_alt 100375 45 + 119498 CTGAAAGGAACAAGCTCTACGTTTA-GGGGAGGTCCCTGGTGTCTG s panTro5.chr12 127386016 45 + 137163284 CTGAAAGGAACAAGCTCTACGTTTA-GGGGAGGTCCCTGGTGTCTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125736315 45 + 135337776 CTGAAAGGAACAAGCTCTGTGTTTA-GGGGAGGTCCCTGGTGTCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8249872 45 - 8369578 CTGAAAGGAACAAGCTCTACGTTTA-GGGGAGGTCCCTGGTGTCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97907945 46 + 106955855 CTGAAAGGAACAAGCTCTACATTTAGGGGGAGGTCCCTGGTGTCTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124023003 45 + 133663169 CTGAAAGGAACAAGCTCTACATTTA-GGGGAGGTCCCTGGTGTCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128271200 45 + 137757926 CTGAAAGGAACAAGCTCTACATTTA-GGGGAGGTCCCTGGTGTCTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669719 45 - 16319837 CTGAAAGGAACAAGCTCTACATTTA-GGGGAGGTCCCTGGTGTCTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12293637 45 + 20526591 CTGAAAGGAACAAGCTCTACATTTA-GGGGAGGTCCCTGGTGTCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119265001 45 + 128539186 CTGAAAGGAACAAGCTCTACATTTA-GGGGAGGTCCCTGGTGTCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616580 45 + 6255621 CTGAAAGGAACAAGCTCTACATTTA-GGGGAGGTCCCTGGTGTCTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4642567 45 - 8658521 CTGAAAGGAACAAGCTCTACATTTA-GGGGAGGTCCCTGGTGTCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114846471 45 + 124281992 CTGGAAGGAACTAGCTCTACATGTA-GGGGAGGTCCCTGGTGTCTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 488751 45 - 9212255 CTGGAAGAAACTAGCTCTAAATGTA-GGGGAGGTCCCTGGTGTCTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2907623 45 + 4466143 CTGGAAGAAACTAGCTCTCCATGTA-GGGGAGGTCCCTGGTGTCTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1610548 45 + 5364348 CTGGAAGGAACTAGCTCTACATGTA-GGGGAGGTCCCTGGTGTCTG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6747218 45 - 9870158 TTGGAAGGAGCAAGCTCTGCCCTTC-GGTGGGGTCCCTGGCGTCTG i proCoq1.NW_012154285v1 C 0 I 1066 s otoGar3.GL873618 4332971 34 + 7922563 TTGAAAGGAGCAAACTCTACACT-----TGAGGTCTTTG------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33181563 45 - 38964690 TTGGAAGGAACAAACTCTAAATGTA-CGTGATGTCACTGGCCTCCA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 868423 41 - 1116856 TTGGAAGGACTGAGCTCTAAA-----AGGGAGGTCCCTGGCCTCTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9493754 979 - 31815103 I e mm10.chr5 124827061 284 + 151834684 I a score=1016588.000000 s hg38.chr12_KI270834v1_alt 100420 90 + 119498 CTAAGAAGGAGCTAAC--CTGGGTT-TAAGCT--GAGTGCCACGCCACAAATCAGTTGGATGCATTTCCGAGCTAAGAAGCAGTAATGAAACACT s panTro5.chr12 127386061 92 + 137163284 CTAAGAAGGAGCTAAC--CTGGATT-TAAGCTGAGAGTGCCACGCCACAAATAAGTTGGATGCATTTCCGAGCTAAGAAGCAGTAATGAAACACT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125736360 92 + 135337776 CTAAGAAGGAGCTAAC--CTGGATT-TAAGCTGAGAGTGCCACGCCACAAATAAGTTGGATGCATTTCCGAGCTAAGAAGCAGTAATGAAACACT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8249917 92 - 8369578 CTAAGAAGGAGCTAAC--CTGGATT-TAAGCTGAGAGTGCCACGCCACAAATAAGTTGGATGCATTTCCGAGCTAAGAAGCAGCAATGAAACACT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97907991 92 + 106955855 CTAAGAAGGAGCTAAC--CTGGATT-TAAGCTGAGAGTGCCACTCCACAAATAAGTTGGATGCATTTCCGAGCTAAGAAGCAGTAATGAAACACT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124023048 92 + 133663169 CTAAGGAGGAGCTAAC--CTGGATT-TAAGCTGAGAGTGCCACGCCACAAGTAAGTTGGATGCATTTCCGAGCAAAGCAGCAGTAATGAAACACT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128271245 92 + 137757926 CTAAGGAGGAGCTAAC--CTGGATT-TAAGCTGAGAGTGTCACGCCACAAGTAAGTTGGATGCATTTCCGAGCAAAGCAGCAGTAATGAAACACT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669764 92 - 16319837 CTAAGGAGGAGCTAAC--CTGGATT-TAAGCTGAGAGTGCCACGCCACAAGTAAGTTGGATGCATTTCCGAGCAAAGCAGCAGTAATGAAACACT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12293682 92 + 20526591 CTAAGGAGGAGCTAAC--CTGGATT-TAAGCTGAGAGTGCCACGCCACGAATAAGTTGGATGCATTTCCGAGCAAAGCAGCAGTAATGAAACACT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119265046 92 + 128539186 CTAAGGAGGAGCTAAC--CTGGATT-TAAGCTGAGAGTGCCACGCCACAAATAAGATGGATGCATTTCTGAGCAAAGAAGCAGTAATTAAACACT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616625 92 + 6255621 CTAAGGAGGAGCTAAC--CTGGATT-TAAGCTGAGAGTGCCACGCCACAAATAAGTTGGATGCATTTCCGAGCAAAGCAGCAGTAATGAAACACT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4642612 92 - 8658521 CTAAGGAGGAGCTAAC--CTGGATT-TAAGCTGAGAGTGCCACGCCACAAAGAAGTTGGATGCATTTCTGAGCAAAGCAGCAGTAATGAAACACT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114846516 92 + 124281992 CTAAGGAGGAGCTAAC--CTGGATT-TAAGCTGAGTGTACCACGCCACAGATAAGCTGGATGCATTTCTGAGCTGAGAAGCAGTCATGAAGGGTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 488796 92 - 9212255 CTGAGGAGGAGCTAAC--CTGGATT-TAAGCTGAGTGTGCCACGCCACGGATAAGCTGGATGCATTTCCGAGCTAAGAAGCAGTCATGAAATGTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2907668 92 + 4466143 CTAAGGAGGAGCTAAC--CTGGATT-TAAGCTGAGTGTGCCACGCCACAGATAAACTGGATGCATTTCCGATCTAAGAAGCAGTCATGAAGTGTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1610593 92 + 5364348 CTAAGGAGGAGCTAAC--CTGGATT-TAAGCTGAGTGTGCCATGCCACAGATAAGCTGGATGCATTTCCGAGCTAAGAAGCAGTCGTGAAATGTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4333005 80 + 7922563 TTAGCAATGTGTTAAC--CTGGTTT-TAAGCT------------CCACATATGAGCTGGCTGCATTTGTGATCTATGGAGCAGTAAGCGAACGTT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33181608 88 - 38964690 TTAGCAATGGGCTAACATCTGGTTT-CAA-----GGGTGCTCCTCCAC-GGTGAGCTGGGTGCAATTCCAGTCCCTTGAGCAGCACTCGGGTACC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 868464 93 - 1116856 CTAGGAATGAGTGAAC--TTAGCTTCTAGGCTCAGAGTTCCGCCCCACGCAACAGCTGAACACAATTCCTATTGACTGAGCAGTAATGGAGGGCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9493754 979 - 31815103 I e mm10.chr5 124827061 284 + 151834684 I e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I a score=350551.000000 s hg38.chr12_KI270834v1_alt 100510 38 + 119498 GGGAAGAT----GAC------AATA--ATAGTT-----------ATGATTTCACAACCTCA s panTro5.chr12 127386153 38 + 137163284 GGGAAGAT----GAC------AATA--ATAGTT-----------ATGATTTCACAACCTCG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125736452 38 + 135337776 GGGAAGAT----GAC------AATA--ATAGTT-----------ATGATTTCACAACCTCG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8250009 38 - 8369578 GGGAAGAT----GAC------AGTA--ATAGTT-----------ATGATTTCACAACCTCG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97908083 38 + 106955855 AGGAAGAT----GAC------AGTA--ATAGTT-----------ATGATTTCACAACCTCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124023140 38 + 133663169 GCGTAGAT----GAC------AATA--ATAGTT-----------ATGATTTCACAACCTTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128271337 38 + 137757926 GCGTAGAT----GAC------AATA--ATAGTT-----------ATGATTTCACAACCTTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669856 38 - 16319837 GCGTAGAT----GAC------AATA--ATAGTT-----------ATGATTTCACAACCTTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12293774 38 + 20526591 GTGTAGAT----GAC------AATA--ATAGTT-----------ATGATTTCACAACCTTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119265138 38 + 128539186 GCGTAGAT----GAC------AATA--ATAGTT-----------ATGATTTCACAACCTTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616717 38 + 6255621 GCGTAGAT----GAC------AATA--ATAGTT-----------ATGATTTCACAACCTTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4642704 38 - 8658521 GGGTAGAT----GAC------AATA--ATAGTT-----------ATGATTTCACAACCTTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114846608 38 + 124281992 GGAAAGGT----GAC------AGTG--ACAGTT-----------ATGGTTTCACAGCCTCG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 488888 38 - 9212255 GGAAAGGT----GAC------AGTG--ATAGTT-----------GTGGCTTCACAACCTTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2907760 38 + 4466143 GGAAAGGT----GAC------AGTG--ATAGCT-----------ATGGCTTCACAACCTCG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1610685 36 + 5364348 GG-AAGGT----GAC------AGTG--CTAGTT-----------ACGGC-TCACAACCTCG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4333085 44 + 7922563 GGAAAGCT----GACAATGTTAATA--ATAGTT-----------GTGATTTCACAATCTTG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33181696 55 - 38964690 AGGATGATGTGGGAC------AGTAGGATGGTTCTAGAGTGGGCATGCTGTCACTGCCCGC i canFam3.chr26 C 0 C 0 e micMur3.chr21 9493754 979 - 31815103 I e mm10.chr5 124827061 284 + 151834684 I e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I e dasNov3.JH568189 868557 0 - 1116856 C a score=285404.000000 s hg38.chr12_KI270834v1_alt 100548 40 + 119498 TGTTG--TGATCATGGTGCTGTGCTGTTttctt---------ttttt--ttcc s panTro5.chr12 127386191 39 + 137163284 TGTTG--TGATCATGGTGCTGTGCTGttttctt---------ttttt--ttc- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125736490 38 + 135337776 TGTTG--TGATCATGGTGCTGTGCt-tgttttc---------ttttt--ttc- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8250047 40 - 8369578 TGTTG--TGATCATGGTGCTGTGCTGTTttctt---------ttttt--ttcc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97908121 42 + 106955855 TGTTG--CGATCATGGTGCTGTGTTGTTTTCtt---------ttttttcttcc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124023178 36 + 133663169 TGTTG--TGATCGTGGTGCTGTGCt----tttc---------ttttt--ttcc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128271375 36 + 137757926 TGTTG--TGATCGTGGTGCTGTGCt----tttc---------ttttt--ttcc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669894 36 - 16319837 TGTTG--TGATCGTGGTGCTGTGCt----tttc---------ttttt--ttcc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12293812 36 + 20526591 TGTTG--TGATCGTGGTGCTGTGCt----tttc---------ttttt--ttcc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119265176 45 + 128539186 TGTTG--TGATCATGGTGCTGTGCT----TTTCTTTTtttttttttt--ttcc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616755 36 + 6255621 TGTTG--TGATCGTGGTGCTGTGCt----tttc---------ttttt--ttcc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4642742 38 - 8658521 TGTTG--TGATCATGGTGCTGTGct----tttc-------ttttttt--ttcc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114846646 39 + 124281992 TGTTG--TGATCATGGTGCTGTGCTGTt-ttct---------ttttt--cccc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 488926 39 - 9212255 TGTTG--TGATCATGGTGCTGTGCTGtt-ttct---------ttttt--cccc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2907798 39 + 4466143 TGTTG--TGATCATGGTGCTGTGCTGTt-ttct---------tcttt--cccc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1610721 39 + 5364348 TGTTG--TGATCACGGTGCTGTGCTGGt-ttcc---------ttttt--cccc i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33181751 42 - 38964690 CCTTGCCTGCACATTGCGCTCTGTTGTTTCCAA---------TGTCT--GTCC i canFam3.chr26 C 0 I 126 e micMur3.chr21 9493754 979 - 31815103 I e mm10.chr5 124827061 284 + 151834684 I e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I e dasNov3.JH568189 868557 0 - 1116856 C e otoGar3.GL873618 4333129 0 + 7922563 C a score=664570.000000 s hg38.chr12_KI270834v1_alt 100588 77 + 119498 tttttcttttctttttgagacagggtctcactctgtcacccaggctggagtgcagtggtgcgaacatagctcactgc s panTro5.chr12 127386230 72 + 137163284 -----cttttctttttgagacagggtctcgctctgtcacccaggctggagtgcagtggtgcgatcatagctcactgc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125736528 72 + 135337776 -----cttttctttttgagacagggtctcgctctgtcacccaggctggagtgcagtggtgcgatcatagctcactgc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8250087 77 - 8369578 tttttcttttctttttgagacagggtctcgctctgtcacccaggctggagtgcagtggtgcgaacatagctcactgc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97908163 77 + 106955855 tttttcttttctttttgagacagggtctcgctctgtcactcaggctggagtgcagtggtgtgaacatagctcactgc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124023214 64 + 133663169 tttttcttttcttt-------------ttactctgtgacccaggctggagtgcagtgttacgaacatagctcgctgc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128271411 64 + 137757926 tttttcttttcttt-------------ttactctgtgacccaggctggagtgcagtgttacgaacatagctcgctgc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669930 64 - 16319837 tttttcttttcttt-------------ttactctgtgacccaggctggagtgcagcgttacgaacatagctcgctgc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12293848 77 + 20526591 tttttcttttctttttgagacagggtcttgctctgtgacccaggctggagtgcagtgttgcgaacatagctcgttgc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119265221 77 + 128539186 tttttcttttctttttgagacagggtcttgctctgtcacccaggctggagtgcggtggtgcgaacatagcttgctgc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616791 77 + 6255621 tttttcttttctttttgagacagggtcttgctctgtgacccaggctggagtgcagtgttacgaacatagctccctgc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4642780 77 - 8658521 tttttcttttctttttgagacagggtctcgctctgtcacccaggctggagtgcagtggtgcgaacatagcttgctgc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114846685 77 + 124281992 tttttctttcctttttgagacagggtctccctctgtcacccaggctggagtgcagtggtacaaacatggctcactgc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 488965 71 - 9212255 tttt------ctttttgagacagggtctccctctgtcacccaggctggagtgcagtggtatgaacatggctcactgc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2907837 77 + 4466143 tttttcttttctttttgagacagggtctccctctgtcacccaggttggagtgcagtggtatgaacatgactcactgc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1610760 77 + 5364348 tttttcttttctttttgagacagggtctccctctgtcacccaggctggagtgcagtggtacgaacatggctcactgc i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9493754 979 - 31815103 I e mm10.chr5 124827061 284 + 151834684 I e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I e dasNov3.JH568189 868557 0 - 1116856 C e canFam3.chr26 33181793 126 - 38964690 I e otoGar3.GL873618 4333129 0 + 7922563 C a score=143875.000000 s hg38.chr12_KI270834v1_alt 100665 21 + 119498 agcctcgacctcctgattgtg s panTro5.chr12 127386302 21 + 137163284 agcctcaacctcctgattgtg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125736600 21 + 135337776 agcctcaacctcctgattgtg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8250164 21 - 8369578 agcctcgacctcctgattgtg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97908240 21 + 106955855 agccgcaacctcctgattgtg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124023278 21 + 133663169 agcctcgacctcctgactgtt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128271475 21 + 137757926 agcctcgacctcctgactgtt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10669994 21 - 16319837 agcctcgacctcctgactgtt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12293925 21 + 20526591 agcctcgacctcctgactgtt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119265298 21 + 128539186 agcctcgacctcctgactgtt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616868 21 + 6255621 agcctcgacctcctgactgtt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4642857 21 - 8658521 agccttgacctcctgactgtt i colAng1.NW_012116043v1 C 0 I 331 s calJac3.chr9 114846762 20 + 124281992 agccgccacctcctgagctc- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 489036 20 - 9212255 agcctccacctcccgagctc- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2907914 20 + 4466143 agcctccacctcctgagctc- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1610837 20 + 5364348 agcccccacctcctgagctc- i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 868557 10 - 1116856 AGCCTTGAAC----------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9493754 979 - 31815103 I e mm10.chr5 124827061 284 + 151834684 I e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I e canFam3.chr26 33181793 126 - 38964690 I e otoGar3.GL873618 4333129 0 + 7922563 C a score=774190.000000 s hg38.chr12_KI270834v1_alt 100686 78 + 119498 aagtgatcgtcctgcctcagcctccccagtagcagctgagactacaggcatgcgtcaccatgcctggctaattttttt s panTro5.chr12 127386323 78 + 137163284 aagtgagcgtcctgcctcagcctccccagtagcagctgagactacaggcatgtgtcaccatgcctggctaattttttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125736621 78 + 135337776 aagtgagcgtcctgcctcagcctccccagtagcagctgagactacaggcatgcgtcaccatgcctggctaattttttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8250185 78 - 8369578 aagtgatcgtcctgcctcagcctccccagtagcagctgagactacaggcatgcgtcaccatgcctggctaattttttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97908261 78 + 106955855 aagtggtcatcctgcctcagcctccccagtagcagctgggactacaggcatgcatcaccatgcctggctaatgttttt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124023299 78 + 133663169 aagtgatcgtcctgcctcagcctccccagtagcagctgggactacaggcacgcatcaccatgcctggctaatgttttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128271496 78 + 137757926 aagtgatcgtcctgcctcagcctccccagtagcagctgggactacaggcacgcatcaccatgcctggctaatgttttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10670015 78 - 16319837 aagtgatcgtcctgcctcagcctccccagtagcagctgggactacaggcacgcatcaccatgcctggctaatgttttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12293946 78 + 20526591 aagtgatcgtcctgcctcagcctccccagtagcagctgggactacaggcatgcatcaccatgcctggctaatgttttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119265319 78 + 128539186 aagtgatcgtcctgcctcagcctccccagtagcagctgggactacaggcatgcgtcaccatgcctggctaatgttttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616889 78 + 6255621 aagtgatcgtcctgcctcagcctccccagtagcagctgggactacaggcatgcatcaccatgcctggctaatgttttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4643209 78 - 8658521 aagtgatcgtcttgcctcagcctccccagtagcagctgggactacaggcatgcatcaccatgcctggctaatgttttt i colAng1.NW_012116043v1 I 331 C 0 s calJac3.chr9 114846782 78 + 124281992 aggtgatcgtcctgcctccgcctccccagtagcagctgggactacaggcacacgtcaccatgcctggctaattttttt i calJac3.chr9 C 0 I 6 s saiBol1.JH378194 489056 78 - 9212255 aagtgatcgtcctgcctcagccttcccagtagcagctgggactacaggcacatgtcaccatgcctggctaattttttt i saiBol1.JH378194 C 0 I 6 s cebCap1.NW_016107484v1 2907934 73 + 4466143 aagtaatggtcctgcctcagcctccccagtagcagctgggactacaggcatatgtca-----cctggctaattttttt i cebCap1.NW_016107484v1 C 0 I 30 s aotNan1.NW_018491581v1 1610857 78 + 5364348 aagtgatcgtcctgcctcagcctccccagtaacaactgggactacaggcacatgtcaccatacctggctaattttttt i aotNan1.NW_018491581v1 C 0 I 5 s dasNov3.JH568189 868567 12 - 1116856 ---------------------------AGTGGCAG------------------------------------TGTT--- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9493754 979 - 31815103 I e mm10.chr5 124827061 284 + 151834684 I e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I e canFam3.chr26 33181793 126 - 38964690 I e otoGar3.GL873618 4333129 0 + 7922563 C a score=80939.000000 s hg38.chr12_KI270834v1_alt 100764 10 + 119498 ggtattttct s panTro5.chr12 127386401 10 + 137163284 ggtattttct i panTro5.chr12 C 0 C 0 s panPan2.chr12 125736699 10 + 135337776 ggtattttct i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8250263 10 - 8369578 tgcattttct i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97908339 10 + 106955855 tgtattttct i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124023377 10 + 133663169 tgtattttct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128271574 10 + 137757926 tgtattttct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10670093 10 - 16319837 tgtattttct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12294024 10 + 20526591 tgtattttct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119265397 10 + 128539186 tgtattttct i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616967 10 + 6255621 tgtattttct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4643287 10 - 8658521 tgtgttttct i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114846866 10 + 124281992 tttatttttt i calJac3.chr9 I 6 C 0 s saiBol1.JH378194 489140 10 - 9212255 tgtatttttt i saiBol1.JH378194 I 6 C 0 s aotNan1.NW_018491581v1 1610940 10 + 5364348 tgtatttttt i aotNan1.NW_018491581v1 I 5 I 15 s dasNov3.JH568189 868579 10 - 1116856 AATAAGTTCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9493754 979 - 31815103 I e mm10.chr5 124827061 284 + 151834684 I e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I e canFam3.chr26 33181793 126 - 38964690 I e otoGar3.GL873618 4333129 0 + 7922563 C e cebCap1.NW_016107484v1 2908007 30 + 4466143 I a score=113063.000000 s hg38.chr12_KI270834v1_alt 100774 21 + 119498 gtagagaaaaatacaaacacg s panTro5.chr12 127386411 21 + 137163284 gtagagaaaaatacaaacacg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125736709 21 + 135337776 gtagagaaaaatacaaacacg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8250273 21 - 8369578 gtagagaaaaatacaaacacg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97908349 21 + 106955855 gtagaggaaaatacaaatgta i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124023387 21 + 133663169 gtagagaaaaatacaaacacg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128271584 21 + 137757926 gtagagaaaaatacaaacacg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10670103 21 - 16319837 gtagagaaaaatacaaacacg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12294034 21 + 20526591 gtagagaaaaatataaacacg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119265407 21 + 128539186 gtagagaaaaatacaaacaca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616977 21 + 6255621 gtagagaaaaatacaaacacg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4643297 21 - 8658521 gtagagaaaaatacaaatatg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114846876 14 + 124281992 gtagagaaggagtc------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 489150 14 - 9212255 gtagagaaggggtc------- i saiBol1.JH378194 C 0 C 0 s dasNov3.JH568189 868589 9 - 1116856 --------AGATGTAAA---- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9493754 979 - 31815103 I e mm10.chr5 124827061 284 + 151834684 I e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I e canFam3.chr26 33181793 126 - 38964690 I e otoGar3.GL873618 4333129 0 + 7922563 C e aotNan1.NW_018491581v1 1610950 15 + 5364348 I e cebCap1.NW_016107484v1 2908007 30 + 4466143 I a score=865317.000000 s hg38.chr12_KI270834v1_alt 100795 91 + 119498 tcaccatgttgccctggctggtcttgaactcctgggctcaagcgatccttccactt--cggcctcccaaagtgttgggatcacaggcatgaga s panTro5.chr12 127386432 91 + 137163284 tcaccatgttgccctggctggtcttgaactcctgggctcaagcgatcctcccactt--cggcctcccaaagcgttgggatcacaggcatgagc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125736730 91 + 135337776 tcaccatgttgccctggctggtcttgaactcctgggctcaagcgatcctcccactt--cggcctcccaaagcgttgggatcacaggcatgagc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8250294 91 - 8369578 tcaccatgttgctctggctggtcttgaactcctgggctcaagcgatccttccactt--cggactcccaaagtgttgggatcacaggcatgagc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97908370 91 + 106955855 tcaccatgttgccctggctggtcttgaactcctgggctcaagcgatcctcccactt--cggcctcccaaagtgttgggatcacaggcatgagc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124023408 88 + 133663169 tcaccatgttgccctgggtggtcttgaactcctggactcaagcgatcctcccactt--cagcctcccaaaa---tgggatcacaggcatgagc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128271605 88 + 137757926 tcaccatgttgccctgggtggtcttgaactcctggactcaagcgatcctcccactt--cagcctcccaaaa---tgggatcacaggcatgagc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10670124 88 - 16319837 tcaccatgttgccctgggtggtcttgaactcctggactcaagcgatcctcccactt--cagcctcccaaag---tgggatcacaggcatgagc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12294055 88 + 20526591 tcaccatgttgccctgggtggtcttgaactccgggactcaagcgatcctcccactt--cagcctcccaaag---tgggatcacaggcatgagc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119265428 88 + 128539186 tcaccatgttgccctggctggtcttgaactcctggactcaagcgatcctcccactt--cggcctcccaaag---tgggatcacaggcataagc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 616998 88 + 6255621 tcaccatgttgccctgggtggtcttgaactcctggactcaagtgatcctcccactt--cagcctcccaaag---tgggatcacaggcatgagc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4643318 88 - 8658521 tcaccatgttgctctggctggtcttgaattcctggactcaagcgatcctcccactt--cggcctcccaaag---cgggatcacaggcataagc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114846890 91 + 124281992 tcaccatgttgccttggctggtcttgaactcctgggctcaagtgatcttcccacct--cagcctcccaaagtgttgggatcataggcatgagc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 489164 91 - 9212255 tcaccacgttgccctggctggtcttgaactcctgggctcacgtgatcttcccacct--cagcctcccaaagtgttgggatcacaggcatgagc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2908037 91 + 4466143 tcaccatattgccctggctggtcttgaattcctgggctcacgtgatcttcccacct--cagcctcccaaagtgttgggatcacaagcatgatc i cebCap1.NW_016107484v1 I 30 C 0 s aotNan1.NW_018491581v1 1610965 91 + 5364348 tcaccatgttgccctggctggtcttgaactcctgggctcaagtgatcttcccacct--cagcctcccaaagtgttgggatcacaggcatgagc i aotNan1.NW_018491581v1 I 15 C 0 s dasNov3.JH568189 868598 25 - 1116856 --------------------------------------------ATCCTGTGATTTCACAGCCTGCCAG------------------------ i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9493754 979 - 31815103 I e mm10.chr5 124827061 284 + 151834684 I e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I e canFam3.chr26 33181793 126 - 38964690 I e otoGar3.GL873618 4333129 0 + 7922563 C a score=3551562.000000 s hg38.chr12_KI270834v1_alt 100886 342 + 119498 cacGATGCTCAGGctgtgctgttttcaaagccctttcaca---cacagtccttaccttccttagtccctg-aacagcctcattgtggatcaggattatt---atggccccaattgcatggccaagggagtgggtggagagaggctgagcccaggaccat----tcaggacagaactgtggtgcaaatcctcct----------------------acctttctgagccagtgagctttcTTTGCTGAGGTCTTGCCTCTCTGCATCAC--AGTGCTCCCTGCTAGAACTTGCTACACAAGTTCAGTACAATGTGGGACAAAGCTTGCAGGAAAAGTCTGTGCGTcag-taagtgtgatggttgcaggcatgcgtgttg s panTro5.chr12 127386523 342 + 137163284 cacGATGCTCAGGctgtgctgttttcaaagccctttcaca---cacagtccttaccttccttagtccctg-aacagcctcattgtggatcaggattatt---atggccccaattgcatggccaagggagtgggtggagagaggctgagCCCAGGACCAT----TCAGGACAGAACTGTGGTGCAAATCCTCCT----------------------ACCCTTCTGAGCCAGTGAGCTTTCTTTGCTGAGGTCTTGCCTCTCTGCATCAC--AGTGCTCCCTGCTAGAACTTGCTACACAAGTTCAGTACAATGTGGGACAAAGCTTGCAGGAAAAGTCCGTGCATCAG-TAAGTGTGATGGTTGCAGGCGGGCGTGttg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125736821 342 + 135337776 cacGATGCTCAGGctgtgctgttttcaaagccctttcaca---cacagtccttaccttccttagtgcctg-aacagcctcattgtggatcaggattatt---atggccccaattgcatggccaagggagtgggtggagagaggctgagcccaggaccat----tcaggacagaactgtggtgcaaatcctcct----------------------acccttctgagccagtgagctttcTTTGCTGAGGTCTTGCCTCTCTGCATCAC--AGTGCTCCCTGCTAGAACTTGCTACACAAGTTCAGTACAATGTGGGACAAAGCTTGCAGGAAAAGTCTGTGCATCAG-TAAGTGTGATGGTTGCAGGCGGGCGTGttg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8250385 341 - 8369578 cacGATGCTCAGGCTGTGCTGTTTTCAAAGCCCTTTCACA---CACAGTCCTTACCTTCCTTAGTCCCTG-AACCGCCTCATTGTGGATCAGGATTATT---ATGGCCCCAATTGCATGGCCAAGGGAGTGGGTGGGGAGAGGCTGAGCCCAGGACCAT----TCAGGACAGAACTGTGGTGCAAATCCTCCT----------------------ACCCTTCTGAGCCAGTGAGCTCTCTTTGCTGAGGCCTTGCCTCTCTGCATCAC--AGTGCTCCCTGCTAGAACTTGCTACACAAGTTC-GTACCATGTGGGACAAAGCTTGCAGGAAAAGTCTGTGTGTcag-taagtgtgatggttgcaggcatgcatgttg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97908461 342 + 106955855 cacgacgctcagGctgtgctgttttcaaagccctttcaca---cacagtctttaccttccttagtccctg-aacagcctctctgtggatcaggattatc---atggccccagttgcatggccaagggagtgggtcaagagaggctgagcccaggaccat----tcaggacagaactgtggtgcaaatcctcct----------------------acccttctgagccagtgagctttcttcgctgAGGTCTTGCCTCTCTGCATTAC--AGTGCTCCCTGCTAGAACTTGCTACACAAGTTCAGTACAATGTGGGACAAAGCTTGCAGGAAAAGCCTGTGCGTCAG-TAAGTTTGATGGTCGCAGGCATGTGTGTGg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124023496 342 + 133663169 cacagtgcccagGctgtgccgtcttcaaagccctttcaca---cacagtccttaccttccttagtccctg-aacagcctcattgcagatcagaattatg---atggccccaattgcatggccaagggagtgggttgagagaggctgagCCCAGGACCAT----TCAGGACAGAACTGTGGTGCAAATCCTCCT----------------------GTCCTTCTGAGCCAGAGAGCTTTCTTTGCTGAGGTCTTGCCTCTCTGCATCAC--AGTGCTCCCTGCTAGAACTTGCTACGCAAGTTCAGTACAATGTGGGACAAAGCTTGCAGGAAAAGCCTGTGCGTCAG-CAAGTGTGATGGTCGCAGGCATGCATGttg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128271693 342 + 137757926 cacagtgcccagGctgtgccgtcttcaaagccctttcaca---cacagtccttaccttccttagtccctg-aacagcctcattgcagatcagaattatg---atggccccaattgcatggccaagggagtgggttgagagaggctgagCCCAGGACCAT----TCAGGACAGAACTGTGGTGCAAATCCTCCT----------------------GTCCTTCTGAGCCAGAGAGCTTTCTTTGCTGAGGTCTTGCCTCTCTGCATCAC--AGTGCTCCCTGCTAGAACTTGCTACGCAAGTTCAGTACAATGTGGGACAAAGCTTGCAGGAAAAGCCTGTGCGTCAG-CAAGTGTGATGGTCGCAGgcatgcatgttg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10670212 342 - 16319837 cacagtgcccagGctgtgccgtcttcaaagccctttcaca---cacagtccttaccttccttagtccccg-aacagcctcattgcagatcagaattatg---atggccccaattgcatggccaagggagtgggttgagagaggctgagcccaggaccat----tcagGACAGAACTGTGGTGCAAATCCTCCT----------------------GTCCTTCTGAGCCGGAGAGCTTTCTTTGCTGAGGTCTTGCCTCTCTGCATCAC--AGTGCTCCCTGCTAGAACTTGCTACGCAAGTTCAGTACAATGTGGGACAAAGCTTGCAGGAAAAGCCTGTACGTCAG-CAagtgtgatggtcgcaggcatgcatgttg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12294143 342 + 20526591 cacagtgcccagGctgtgccgtcttcaaagccctttcaca---cacagtccttaccttccttagtccctg-aacagcctcattgcaggtcagaattatg---atggccccagttgcatggccaagggagtgggtcgagagaggctgagcccaggaccat----tcagGACGGAACTGTGGTGCAAATCGTCCT----------------------GTCCTTCTGAGCCAGAGAGCTTTCTTTGCTGAGGTCTTGCCTCTCTGCATCAC--AGTGCTCCCTGCTAGAACTTGCTACGCAAGTTCAGTACAATGTGGGACAAAGCTTGCAGGAAAAGCCTGTGCggcag-caagtgtgatggtcgcaggcatgcgtgttg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119265516 342 + 128539186 cacggtgcccagGctgtgctgtcttcaaagccctttcaca---cacagtccttaccttccttagtccctg-aacagcctcattgcagatcagaattatg---atggccccagttgcatggccaagggagtgggtcgagagaggctgagCCCAGGACCAT----TCAGGACAGAACTGTGGTGCAAATCCTCCT----------------------GTCCTTCTGAGCCAGAGAGCTTTCTTTGCTAAGGTCTTGCCTCTCTGCATCAC--AGTGCTCCCTGCTAGAACTTGCTACGCAAGTTCAGTACAATGTGGGACAAAGCTTGCAGGAAAATCCTGTGCGTCAG-CAAGTGTGATGGTCGCAGgcatgcgtgttg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 617086 342 + 6255621 cacagtgcccagGctgtgccgtcttcaaagccctttcaca---cacagtccttaccttccttagtccctg-aacagcctcattgcaggtcagaattatg---atggccccaattgcatggccaagggagtggatcgagagaggctgagcccaggaccat----tcagGACAGAACTGTGGTGCAAATCCTCCT----------------------GTCCTTCTGAGCCAGAGAGCTTTCTTTGCTGAGGTCTTGCCTCTCTGCATCAC--AGTGCTCCCTGCTAGAACTTGCTACGCAAGTTCAGTACAATGTGGGACAAAGCTTGCAGGAAAAGCCTGTGCGTCAG-CAagtgtgatggtcgcaggcatgcgtgttg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4643406 342 - 8658521 catggtgcccagGCTGTGCTGTCTTCAAAGCCCTTACACA---CACAGTCCTTACCTTCCTTAGTCCCTG-AACAGCCTCATTGCAGATCAGAATTATG---ATGGCCCCAGTTGCATGGCCAAGGGAGTGGGTCGAGAGAGGCTGAGCCCAGGACCAT----TCAGGACAGAACTGTGGCACAAATCCTCCT----------------------ATCCTTCTGAGCCAGACAGCTTTCTTTCCTGAGATCTTGCCTCTCTGCATCAC--AGTGCTCCCTGCTAGAACTTGCTACGCAAGTTCAGTACAATGTGGGACAAAGCTTGCAGGAAAAGCCTGTGCGTCAG-CAAGTGTGATGGTCGCAGGCATGCATGttg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114846981 330 + 124281992 cacagtgcccaggccGTGCCgtttccaaagcccttt--ca---cacagtccttacctcccttagtccctgaaacatccccgttgtggatcaggtttatt---atgcccccagctgcatggccaaggagatgggttgagagaggctgagccaaggaccat----ttgggacagaactggggcatgagtcctcct----------------------acccctctgagccagtgagctttcTTTGCTGTGGTTCTGCCTCTCTGTATCAC--AATGCTCCCTGCTAGAACTCCCTACGCAAGTTCAGTACAATGTGAGACAAAGCTCGCAGGAAAAGCCTGTGCGTCA------------GGTTGCAGGCACGCGTGttg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 489255 363 - 9212255 cacagtgcccagGctgtgctgtttccaaagcccttc--ca---cacagcccttacctcccttagtccctgaaacatccctgttgtggatcaggattgtt---atgcccccagctgcacggccaagggagtgggttgagagaggctgagCCCAGGACCAT----TTGGGACAGAACTGGGGCATGAATCCTCCTACCCTTTTGAGCCAGTGACCTAACCCTTCTGAGCCAGTGAGCTTTCTTTGCTGTGGTCCTGCCTCTCTGCGTCAC--AATGCTCCCTGCTAGAACTCCGTACGCAAGTTCAGTGCAATGTGAGACAAAGCTCTCAGGAAAAGCCTGTGCATCAG-TAAGTGTGACGGTCACAGGCACGTGTGttg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2908128 341 + 4466143 cgcagcgcccagGctgtgctgcttccaaagcccttt--ca---cacagtccttacctcccatagtccctgaaacatccccgttgtggatcaggattatt---atgcccccagctacacggccaagggagtgggttgagagaggctgagCCCAGGACCAT----TTGGGACAGAACTGGGGCGTGAGTCCTCCT----------------------ACCCTTCTGAGCCCGTGAGCTTTCTTTGCTGTGGTCCTGCCTCTCTGCATCAC--AATGCTTCCTGCTAGAACTCCCTATGCAAGTTCAGTACAATGTGAGACAAAGCTCGCAGGAAGAGCCTGTGCGTCAG-TAAGTGTGACGGTCGCAGGCACGCGTGttg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1611056 342 + 5364348 tgcagcgcccagGctgtgctgtttccaaagcccttt--ca---cacagtccttacctcccttagtccctgaaacatccctgttgtggatcaggattatc---atgcccccagctgcatggccaggggagtgggttgagagaggctgagcccaggaccat----ttgggacagaactggggcgtgaatcctcct----------------------acccttctgagccagtgagctttcTTTGCTGTGGTCCTGCCTCTCTGTATCAC--AATGCTCCCTGCTAGAACTCCCTACGAAAGTTCAGTACAATGTGAGACAAATCTCGCAGGAAAAGCCTGTGGGTCAGTTAAGTGTGACGGTCGCAGgcacgcgtgttg i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4333129 279 + 7922563 CAGGATCATTGTGCCCTGCTATTTTCAAAGCCCTTTCACA---TCCAGTCCTTACCTCCCTCAGTCTCTGCAGTGTTCCCGCTGTGGATCAGTATTATTATCATTGCCCCAGTTACATGGCTGAGGAAGT----------------------GGACCAT----GTGGGACAAAACGATGGTGCAAGT----CT-----------------------------TGGGCCAGTAAGCTTTCTTTGCTACAGCCCTGCTTATCTGGACCAT--GCTGCACTCTGTTGGAACTTGCCACACAAATGCACTAAA---------------TGCA--------------------TAAGTGTGGTGGTCACACATGAGGGCTCTG i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 868623 314 - 1116856 ---GATCCCTGTGCTCTGCTCTTCCCCACACTCTCTCCTGTGCCATCGTCATCATCACCCTCAGGCCTCGCAGCAGCCCTGCTGCAGGTCAGGAGT-TC---ACGGCCCCAGTTGCCTGGTCCAGGAGGTGGGTAGAGAGAGGCTGAGACCCAGGCCATGCACCCAGGGCTGCAGAGCCTTCCAGGCCTGCAG----------------------AGCCTTCCAGGCCAGTG-GCTTTCTCTTCCACAGCCTGGCTTCTCCGAACCACGTGTTGTACCCAGATAGAACTTGCTCCACAAG-----------------------------GAAAAGCCTGGG--TTGG-TAAATGCAGTGTCCACAG--ATGGCCTTTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9493754 979 - 31815103 I e mm10.chr5 124827061 284 + 151834684 I e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I e canFam3.chr26 33181793 126 - 38964690 I a score=2221226.000000 s hg38.chr12_KI270834v1_alt 101228 205 + 119498 gggtcagagggagctgactgccagtcctggctttgctatgaa----ctgtgaggctttgggtaagc---ccctctactgctgaaagcc-cctgggtgag-----atgagg--atggc-aatacccatgctgGATGGCCCAGGAGGCAAGCCCTGGGCACCAGCAAGGC-GG-GCCAGCTCTCTC-------AACCACA-ACACTGAAATAAGCTATTGTAACGCCAGCACT s panTro5.chr12 127386865 205 + 137163284 gggtcagagggagctgactgccagtcctggcttcgctatgaa----ctgtgaggctttgggtaagc---ccctctactgctgaaagcc-cctgggtgag-----atgagg--atggc-aatacccatgctgGATGGCCCAGGAGGCAAGCCCTGGGCACCAGCAAGGC-GG-GCCAGCTCTCTC-------AACCATA-ACACTGAAATAAGCTATTGAAACGTCAGCACT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125737163 205 + 135337776 gggtcagagggagctgactgccagtcctggcttcgctatgaa----ctgtgaggctttgggtaagc---ccctctactgctgaaagcc-cctgggtgag-----atgagg--atggc-aatacccatgctgGATGGCCCAGGAGGCAAGCCCTGGGCACCAGCAAGGC-GG-GCCAGCTCTCTC-------AACCATA-ACACTGAAATAAGCTATTGAAACGTCAGCACT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8250726 205 - 8369578 gggtcagagggagctgactgccagtcctggctttgctatgaa----cggtgagactttgggtaagc---ccctctactgctgaaagcc-cctgggtgag-----atgagg--atggc-aatacccatgctgGATGGCCCAGGAGGCAAGCCCTGGGCACCAGCAAGGC-GG-GCCAGCTCTCTC-------AACCACA-ACACTgaaataagctattgtaacgtcagcact i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97908803 205 + 106955855 gggtcagagggagctgactgccagtcctggctttgctatgaa----ctgtgaggttttgggtgagc---ccctctgctgctggaagcc-cctgggtgag-----atgagg--atggc-aatacccatgctgGATGGCCCAGGAGGCAAGCCCTGGGCACCAGCAAGGC-GG-GCCAGCTCTCTT-------AACCACA-ACAATGAAAGAAGCTATTGTAACGTCAGCACT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124023838 205 + 133663169 gggtcagagggagctgactgccagtcctggctttgctatgaa----ctgcaaggctttgggtaagc---ccctctgctgctgaaagcc-cctgagtgag-----atgagg--atggc-catacccatgctgGATGGCCCGGGAGGCAAGCCCTGGGCACCAGCAAGGC-GG-GCCAGCTCTCTC-------AACCACA-ACACTgaaagaagctattgtaacatcagcgct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128272035 205 + 137757926 gggtcagagggagctgactgccagtcctggctttgctatgaa----ctgcaaggctttgggtaagc---ccctCTGCTGCTGAAAGCC-CCTGGGTGAG-----ATGAGG--ATGGC-CATACCCATGCTGGATGGCCCGGGAGGCAAGCCCTGGGCACCAGCAAGGC-GG-GCCAGCTCTCTC-------AACCACA-ACACTGAAAGAAGCTATTGTAACATCAGCGCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10670554 205 - 16319837 gggtcagagggagctgactgccagtcctggctttgctatgaa----ctgcaaggctttgggtaagc---ccctctgctgctgaaagcc-cctgggtgag-----atgagg--atggc-catacccatgctgGATGGCCCGGGAGGCAAGCCCTGGGCACCAGCAAGGC-GG-GCCAGCTCTCTC-------AACCCCA-ACACTgaaagaagctattgtaacatcagcgct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12294485 205 + 20526591 gggtcagagggagctgactgccagtcctggctttgctacgaa----ctgcgaggctttgggtaagc---ccctctgctgctgaaagcc-cctgggtgag-----atgagg--atggc-catacccatgctgGATGGCCCAGGAGGCAAGCCCTGGGCACCAGCAAGGC-GG-GCCAGCTCTCTC-------AACCACA-ACACTgaaagaagctattgtaacatcagcgct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119265858 205 + 128539186 gggtcagagggagctgactgccagtcctggctttgctatgaa----ctgcaaggctttgggtaagc---ccctCTGCTGCTGAAAGCC-CCTGGGTGAG-----ATGAGG--ATGGC-CGTACCCATGCTGGATGGCCCAGGAGGCAAGCCCTGGGCACCAGCAAGGC-GG-GCCAGCTCTCTA-------AACCACA-ACACTGAAAGAAGCTATTGTAACATCAGCACT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 617428 205 + 6255621 gggtcagagggagctgactgccagtcctggctttgctatgaa----ctgcgaggctttgggtaagc---ccctctgctgctgaaagcc-cctgggtgag-----atgagg--atggc-catacccatgctgGATGGCCCAGGAGGCAAGCCCTGGGCACCAGCAAGGC-GG-GCCACCTCTCTC-------AACCACA-ACACTgaaagaagctattgtaacatcagcgct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4643748 205 - 8658521 gggtcagagggagctgactgccagtcctggctttgctatgaa----ctgcgaggctttgggtaagc---ccctctgctgctgaaagcc-cctgggtgag-----atgagg--atggc-catacccatgctgGATGGCCCAGAAGGCAAGCCCTGGGCACCAGCAAGGC-GG-GCCAGCTCTCTC-------AACCACA-ACACTGAAAGAAGCGATTGTAACATCAGCACT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114847311 202 + 124281992 gggtcagagggagctgactgccagtccccgctttgctatggactgtctgcgaggctctgggtaagc---ccctctgctgctggaag-c-cctgggtgag-----atgagg--atggc-agtacccatgctgGATGGCGCAGGAGGCAAGCCCCAGGCACCCTCAAGGT-GG-GCCAGCTCTCTC-------AACC-------CTGAAAGAAGCTATTGTAATGTCAGCACT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 489618 202 - 9212255 gggtcagagggagctgactgccagtccccgctttgccatgaactgtctgcgaggctctgggcaagc---ccctctgctgctggaag-c-cctgggtgac-----atgagg--atggc-aatacccatgctgGATGGCGCAGGAGGCAAGCCCCTGGCACCCGTGAGGC-AG-GCCAGCTCTCTC-------AACC-------CGGAAAGAAGCAATTGTAACGTCATCACT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2908469 202 + 4466143 gggtcagagggagctgactgccagtccccgctttgccatgaactgtctgcgaggctctggctaagc---ccctctgctgctggaag-c-cctgggtgag-----atgagg--atggc-aatacccatgctgGATGGCGCAGGAGGCAAGCCCCGGGCACCTGCGAGGC-GG-GCCAGCTCTCTC-------AACC-------CTgaaagaagctattgtaacgtcagcact i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1611398 195 + 5364348 gggtcagagggagctgactgccagtccccgctttgctatgaactgtctgcgaggctctgggtaagc---ccctctgctgctggaag-c-cctgggtgag-----atgagg--atggc-aatacccaTGCTGGATGGTGCAGGAGGCAAGCCCCAGGCAT-------GT-GG-GCCAGCTCTCTC-------AACC-------CTgaaagaagctattgtaacgtcagcact i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4333408 195 + 7922563 GGGTCAGAGGCA-CTGACTGCCAACCGTAGCTTGGCTGTGAACCGGCTGTAAGGCTCTGGGCCAGC---CCC-CCAATGCCACAAGCT-CACCTGTGCA-----GTGATG--ATGAC-AAT-TCCAGGCT-------------AGTGAGCCAAGGGCCCCAGCTAGGT-AGAGCCAGCTCTCTCT------AACCATG-AGACTGAAATGAGCTATTATAATGTTGGCACT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124827345 208 + 151834684 GGGTCAGAGGGAGCAGACTGCCAGTCCTGACTTTGTTGTGAC----GTGTCTTGCTTCCAGCACGCAAACCTACCACCTCTTGATACA-CCTCTTCACGTGTCTGTGAAGCTCTGGCAAATGCTTCCACCAGA--GCACAGGA--------CAGGGCACCAT--ACAC-AG----AGCTCTCTCTCCTTCCAACCTCA-GAACTGGAGGAAGCCATTTCCATATGAGCACC i mm10.chr5 I 284 I 117 s dasNov3.JH568189 868937 198 - 1116856 GGGTCAGAGGGCACTGA--GCCTGTTCAGGCTGTGCCTTGAGCTGCCTGGGAGGCTGT-GGCGGGC---CCCTCGGCTGCTGGAAGCTGCATGCATGAA-----AGGAGG---TAAT-AATTTGTGTGCTGCATCACCCCT-AGGCAAGCCAAGGGCACCAGCAAGGCAGG-GCCACCTCCCCTG------AATCACAGACCCTGAAAGAAGCTAGGATAA---------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9493754 979 - 31815103 I e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I e canFam3.chr26 33181793 126 - 38964690 I a score=1402048.000000 s hg38.chr12_KI270834v1_alt 101433 134 + 119498 CATGT--GTTTTAAGCCATTTCAGAAAGCAAGGCTTGATTTGGGTgtttagcttgtttgtgctttgaattacatttgggaggggacatggtgattgttttccaggcctagggc-cctgaagatcttaCAGTGGCCAG s panTro5.chr12 127387070 134 + 137163284 CATGT--GTTTTAAGCCATTTCAGAAAGCAAGGCTTGATTTGGGTgtttagcttgtttgtgctttgaattacatttgggaggggacatggtgattgttttccaggcctagggc-cctgaagatcttaCAGTGGCCAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125737368 134 + 135337776 CATGT--GTTTTAAGCCATTTCAGAAAGCAAGGCTTGATTTGGGTgtttagcttgtttgtgctttgaattacatttgggaggggacatggtgattgttttccaggcctagggc-cctgaagatcttaGAGTGGCCAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8250931 133 - 8369578 catgt--gttttaagccatttcagaaagcaaggcttgatttgggtgtttagcttgtttgtgctttgaattacatttggga-gggacatggtgattgttttccaggcctagggc-cctgaagatcttaCAGTGGCCAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97909008 134 + 106955855 CATGT--GTTTTAAGCTATTTCAGAAACCAAGGCTTGATTTGGGTgtttagcttgtttgtgctttgaattacatttgggaggggacgtggtgattgttttccaggcctagggc-cctgaagatcttaCAGTGGCCAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124024043 133 + 133663169 catgt--gttttaagccatttcagaaaccaaggcttgatttgggtgtttagcttgtttgtgc-ttgaattacatttgggaggggacatggtgattgttttccaggcctagggc-cctgaagatcttaCAGTGGCCAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128272240 133 + 137757926 CATGT--GTTTTAAGCCATTTCAGAAACCAAGGCTTGATTTGGGTgtttagcttgtttgtgc-ttgaattacatttgggaggggacatggtgattgttttccaggcctagggc-cctgaagatcttaCAGTGGCCAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10670759 133 - 16319837 catgt--gttttaagccatttcagaaaccaaggcttgatttgggtgtttagcttgtttgtgc-ttgaattacatttgggaggggacatggtgattgttttccaggcctagggc-cctgaagatcttaCAGTGGCCAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12294690 133 + 20526591 catgt--gttttaagccatttcagaaaccaaggcttgatttgggtgtttagcttgtttgtgc-ttgaattacatttgggagggggcatggtgattgttttccaggcctagggc-cctgaagatcttaCAGTGGCCAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119266063 133 + 128539186 CATGT--GTTTTAAGCCATTTCAGAAACCAAGGCTTGATTTGGGTgtttagcttgtttgtgc-ttgaattacatttgggaggggacatggtgattgttttccaggcctagggc-cctgaagatcttaCAGTGGCCAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 617633 133 + 6255621 catgt--gttttaagccatttcagaaaccaaggcttgatttgggtgtttagcttgtttgtgc-ttgaattacatttgggagggggcatggtgattgttttccaggcctagggc-cctgaagatcttaCAGTGGCCAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4643953 133 - 8658521 CATGT--GTTTTAAGCCATTTCAGAAACCAAGGCTTGATTTGGGTgtttagcttgtttgtgc-ttgaattacatttgggaggggacatggtgattgttttccaggcctagggc-cctgaagatcttaCAGTGGCCAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114847513 125 + 124281992 CATATAAGTTTTAAGCCATTTCAGAAACCAAGACTTGCTGTGTGTGTTTAGCTTGTTTGTGCTTTGA--TACATTTGGGAGGGAACATGGTGATTGTTTTCCAGGCCTAGG-C-CCTTAAGATGTTACA-------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 489820 136 - 9212255 CATGTAAGTTTTAAGCTATTTCAGAAACCAAGACTTGCTGTGCGTGTTTAGCTTGTTTGTGCTTTGAATTACATTTCAGAGGGAACATGGTGACTGTTTTCCAGGCCTAGGTC-CCTTAAGATGTTACAGTGGCCGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2908671 136 + 4466143 catgtaagttttaagccatttcagaaaccaagacttgctgtgcgtgtttagcttgtttgtgctttgaattacatttgggagggaacatggtgattgttttccaggcctaggcc-cctgaagatGCTACAGTGGCCAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1611593 136 + 5364348 catgtaagttttaagccatttcagaaaccaagacttgctgtgcgtgtttagcttgtttgtgctttgaattacatttgggagggaacatggtgattgttttccaggcctaggcc-ccttaagatgttaCAGTGGCCAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4333603 96 + 7922563 TGTGTAAGTTTTAAGTCATTTCAAAAACCAAAATTTTGTTCAAGTGTCTGGCTTGTTTATACTTTCAATGACA-TTGGGAGGGGACATTATGAGTGT---------------------------------------- i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 869135 106 - 1116856 -------GTTTTAAAGCATTTCAAAAGCTGAGCTTATATTTGAGGGTTTCGCTTGCTTTTACCTT------------------------GTGGTTGGCTTCTATGCATGGGGCGCTTGAGGATCGTGAACTGGCCAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9493754 979 - 31815103 I e mm10.chr5 124827553 117 + 151834684 I e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I e canFam3.chr26 33181793 126 - 38964690 I a score=1491562.000000 s hg38.chr12_KI270834v1_alt 101567 142 + 119498 GACAG--TCCCGACTTCCTGGTGGGCTTTAGCTGGTCTCTT----GCAGCCCTGCTCA--GGAGTCCTCAGGGGACAGGAGCGACTGTGTGGGAGGAGCTG--GGACTTCCAGGGCC-AGGGAGGCA-GATGAGTGCAAAATGCTCACCCATCT s panTro5.chr12 127387204 142 + 137163284 GACAG--TCCCGACTTCCTGGTGGGCTTTAGCTGGTCTCTT----GCAGCCCTGCTCA--GGAGTCCTCAGGGGACAGGAGCGACTGTGTGGGAGGAGCTG--GGACTTCCAGGGCC-AGGGAGGCC-GATGAGTGCAAAATGCTCACCCATCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125737502 142 + 135337776 GACAG--TCCCGACTTCCTGGTGGGCTTTAGCTGGTCTCTT----GCAGCCCTGCTCA--GGAGTCCTCAGGGGACAGGAGCGACTGTGTGGGAGGAGCTG--GGACTTCCAGGGCC-AGGGAGGCC-GATGAGTGCAAAATGCTCACCCATCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8251064 142 - 8369578 GACAG--TCCCGACTTCCTGGTGGGCTTTAGCTGGTCTCTT----GCAGCCCTGCTCA--GGAGTCCTCAGGGGACAGGAGCGACTGTGTGGGAGGAGCTG--GGACTTCCAGGGCC-AGGGAGGCC-GATGAGTGCAAAATGCTCACCCATCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97909142 142 + 106955855 GACAG--TCCCTACTTCCTGATGGGCTTTAGCTGGTCTCTT----GCAGCCCTGCTTA--GGGGTCCTCAGGGGACAGGAGCGACTGTGTGGGAGGAGCTG--GGACTTCTAGGGCC-AGGGAGGCC-GATGAGTGCAAAATGCTCACCCGTCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124024176 139 + 133663169 GACAA--TCCCGACTTCCTGGTGGGCTTTAGCTGGTCTGTT----GCAGCCCTGCTCA--GGAGTCCTC--CGGACAGGAGCGACTGTGTGGGAGAAGCTG--GGGTTTCTAGGGCC--GGGGGGCT-GATGAGTGCAAAATGCTAACCCATCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128272373 139 + 137757926 GACAA--TCCCTACTTCCTGGTGGGCTTTAGCTGGTCTGTT----GCAGCCCTGCTCA--GGAGTCCTC--CGGACAGGAGCGACTGTGTGGGAGAAGCTG--GGGTTTCTAGGGCC--GGGGGGCT-GATGAGTGCAAAATGCTGACCCATCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10670892 138 - 16319837 GACAA--TCCCTACTTCCTGGTGGGCTTTAGCTGGTCTGTT----GCAGCCCTGCTCA--GGAGTCCTC--CGGACAGGAGCGACTGTGTGGGAGAAGCTG--GGGTTTCTAGGGCC---GGGGGCT-GATGAGTGCAAAATGCTAACCCATCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12294823 140 + 20526591 GACAA--TCCCTACTTCCTGGTGGGCTTTAGCTGGTCTGTT----GCAGCCCTGCTCA--GGAGTCCTC--GGGACAGGAGCGACTGTGTGGGAGAAGCTG--GGGTTTCTAGGGCC-AGGGGGGCT-GATGAGTGCAAAATGCTAACCCATCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119266196 140 + 128539186 GACAA--TCCCTACTTCCTGGTGGGCTTTAGCTGGTCTGTC----GCAGCCCTGCTCA--GGAGTCCTC--GGGACAGGAGCGACTGTGTGGGAGAAGCTG--GGGTTTCTAGGGCC-AGGGAGGCT-GATGAGTGCAAAATGCTAACCCATCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 617766 140 + 6255621 GACAA--TCCCTACTTCCTGGTGGGCTTTAGCTGGTCTGTT----GCAGCCCTGCTCA--GGAGTCCTC--GGGACAGGAGCGACTGTGTGGGAGAAGCTG--GGGTTTCTAGGGCC-AGGGGGGCT-GATGAGTGCAAAATGCTAACCCATCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4644086 140 - 8658521 GACAA--TCCCTACTTCCTGGTAGGCTTTAGCTGGTCTGTT----GCAGCCCTGCTCA--GGAGTCCTT--GGGACAGGAGCGACTTTGTGGGAGAAGCTG--GGGTTTCTAGGGCC-AGGGAGGCT-GATGAGTGCAAAATGCTAACCCATCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114847638 138 + 124281992 ----G--TCCCTACTTCCTGGTGGGCTTTAGCTGTTCTCTT----GCAGCCCTGCTCA--GGGCTCCTGAGGGGACAGGAGTGACCATGTGGGAGAAGTTG--GGTCTTCTCAGGCC-AGGGAGGCT-GATGAGTGCAAAACGCTCACCCACCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 489956 142 - 9212255 GACGG--TCCCTACTTCCTGGTGGGCTTTAGCTGTTCTCTT----GCAGCCCTGCTCA--GGACTCCTCAGGGGACAGGAGTGACCATGTGGGAGAAGTTG--GGTCTTCTCAGGCC-AGGGAGGCT-GATGAGGGCAAAACGCTCACCCATCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2908807 142 + 4466143 GACGG--TCCCTACTTCCTGGTGGGCTTTAGCTGTTCTCTT----GCAGCCCTGCTCA--GGATGCCTCAGGGGACAGGAGTGACCATGTGGGAGAAGTTG--GGTCTTCTCAGGCC-AGGGAGGCT-GATGAATGCAAAACGCTCACCCATCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1611729 142 + 5364348 CACGG--TCCCTACTTGCTGGTGGGCTTTAGCTGTTCTCTT----GCAGCCCTTTTCA--GGACTCCTCAGAGGACAGGAGTGACCATGTGGGAGAATTTG--GGTCTTCTCAGGCC-AGGGAGGCT-GATGAGTGCAAAACGCTCACCCATCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4333699 138 + 7922563 -------TCCTTACCTG-TGGTGGGTTTTAGTTGGTCTCTT----GCAGCCCTGCTCCATGGGGTCATTGGGGTACAGGTGTGACTATGTGGGAGGGGCTC--GAACTCTTAGGGCC-GTGGAGGCC-GATGGGTGCAAGATATACACTCATCT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124827670 124 + 151834684 GATAG--TTC-TGCTTCCTGGAGGG-GTGGGCAGGACTCTTGCAGGCAGGCCTGCTCA--GGTGTC-----------------ACTGTCTGAGAAAGCATGTCACATGTCTCGGGGC-ATGGAGGCT-GG-GAAGGCACGAGGCT----CATCG i mm10.chr5 I 117 C 0 s dasNov3.JH568189 869241 125 - 1116856 GACAGCATCTCCACTTCCAGGTGAACTTTAGTTTGTCTCTT----GTGGCGCTGCTTC----------------ATGGGAGGGAC------AGAGCGGTTG--GAGTGCTTGGGGCTGAGGGTGGCCAGGTGAGGGCAGTGTGCTCGC-TGTCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9493754 979 - 31815103 I e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I e canFam3.chr26 33181793 126 - 38964690 I a score=790281.000000 s hg38.chr12_KI270834v1_alt 101709 71 + 119498 TCCAGGCTGGGTGTGACCAGCTCAGTGCACCCACGGGGC--CCATG--GGGTTTCTCAAAGATGGTTTATTTGAA s panTro5.chr12 127387346 71 + 137163284 TCCAGGCTGGGTGTGACCAGCTCAGTGCACCCACGGGGC--CCATG--GGGTTTCTCAAAGATGGTTTATTTGAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125737644 71 + 135337776 TCCAGGCTGGGTGTGACCAGCTCAGTGCACCCACGGGGC--CCATG--GGGTTTCTCAAAGATGGTTTATTTGAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8251206 71 - 8369578 TCCAGGCTGGGTGTGACCAGCTCAGTGCACCCACAGGGC--CCATG--GGGTTTCTCAAAGATGGTTTATTTGAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97909284 71 + 106955855 TCCAGGCTGTGTGTGACCAGCTCAGTGCACCCACGGGGC--CCACG--GGGTTTCTCAAAGATGGTTTATTTGAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124024315 71 + 133663169 TCCAGGCTGTGTGTGACCAGCTCAGTGCACCCACGGGGC--CCATG--GGGTTTCTAAAAGATGGTTTATTTGAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128272512 71 + 137757926 TCCAGGCTGTGTGTGACCAGCTCAGTGCACCCACGGGGC--CCATG--GGGTTTCTAAAAGATGGTTTATTTGAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10671030 71 - 16319837 TCCAGGCTGTGTGTGACCAGCTCAGTGCACCCACGGGGC--CCATG--GGGTTTCTAAAAGATGGTTTATTTGAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12294963 71 + 20526591 TCCAGGCTGTGTGTGACCAGCTCAGTGCACCCACGGGGC--CCATG--GGGTTTCTAAAAGATGGTTTATTTGAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119266336 71 + 128539186 TCCAGGCTGTGTGTGACCAGCTCAGCGCACCCACGGGGA--CCATG--GGGTTTCTAAAAGATGGTTTATTTGAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 617906 71 + 6255621 TCCAGGCTGTGTGTGACCAGCTCAGTGCACCCACGGGGC--CCATG--GGGTTTCTAAAAGATGGTTTATTTGAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4644226 71 - 8658521 TCCAGGCTGTGTGTGACCGGCTCAGCGCACCCACGGGGC--CCATG--GGGTTTTTAAAAGATGGTTTATTTGAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114847776 71 + 124281992 TCCGGGCTGTGTGTGACCAGCTCAGTGCACCCGCGGGGC--CCATG--GGGTTTCTGAAGGATGGTTTCTTTGAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 490098 71 - 9212255 TCTGGGCTGTGTGTGACCCGCTCAGTGAACCCACGGGGC--CCATG--AGGTTTCTAAAAGATGGTTTCTTTGAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2908949 71 + 4466143 TCTGGGCTGTGTGTGACCAGCTCAGTGCACCCATGGGGC--CCATG--GGGTTTCTAAAAGATGGTTTCTTTGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1611871 71 + 5364348 TCCGGGCTGTGTGTGACCAGCTCAGTGCACCCATGGGGC--CCATG--GGGTTTCTAAAATATGGTTTCTTTGAA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4333837 64 + 7922563 TCCAGGCTCTGAG-----AGCCCTGCCCTCAAACAGGCC--ACCTGA-GGGTTTCT--GAGATTGTTTCTTTGC- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124827794 58 + 151834684 TCTAAGCC----ATGACTGGCCCTG---------AGGTC--ACAGG--TTGTTACTAGGTCACAGGTTGTCTCAG i mm10.chr5 C 0 I 3 s canFam3.chr26 33181919 66 - 38964690 TCCAGGCT----GGGACCAGCCTGGTG-GCCCAGTGGCC--CTGAA--GGGATTCTAAAAGATCAGTTCTTTGAA i canFam3.chr26 I 126 C 0 s dasNov3.JH568189 869366 69 - 1116856 TCCAGGCT----GTAGCCTGCAC--TGCAGCCAGTGGGCGGCCCTGATGGAATTTTAGATGACTGTGTCTTCCAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9493754 979 - 31815103 I e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I a score=642471.000000 s hg38.chr12_KI270834v1_alt 101780 52 + 119498 GGCTCCACCTGTAGCTCCTGGATCCTCGGCTTGCTTTTGGCTTCTGCTGGAG s panTro5.chr12 127387417 52 + 137163284 GGCTCCGCCTGTAGCTCCTGGATCCTCGGCTTGCTTTTGGCTTCTGCTGGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125737715 52 + 135337776 GGCTCCGCCTGTAGCTCCTGGATCCTCGGCTTGCTTTTGGCTTCTGCTGGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8251277 52 - 8369578 GCCTCCGCCTGTAGCTCCTGGATCCTCGGCTTGCTTTTGGCTTCTGCTGGAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97909355 52 + 106955855 GGCTCCCCTTGTAGCTCCTGGATCCTCGGCTTTCTTTTGGCTTCTGCTGGAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124024386 52 + 133663169 GGCTCCTCCTGTAGCTCCTGGATCCTTGGCTTGCTTTTGGCTGCTGCTGGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128272583 52 + 137757926 GGCTCCTCCTGTAGCTCCTGGATCCTTGGCTTGCTTTTGGCTGCTGCTGGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10671101 52 - 16319837 GGCTCCTCCTGTAGCTCCTGGATCCTTGGCTTGCTTTTGGCTGCTGCTGGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12295034 52 + 20526591 GGCTCCTCCTGTAGCTCCTGGATCCTTGGCTTGCTTTCGGCTGCTGCTGGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119266407 52 + 128539186 GGCTCCTCCTGTAGCTCCTGGGTCCTTGGCTTTCTTTTGGCTGCTGCTGGAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 617977 52 + 6255621 GGCTCCTCCTGTAGCTCCTGGATCCTTGGCTTGCTTTTGGCTGCTGCTGGAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4644297 52 - 8658521 GTCTCCTTCTGTAGCTCCTGGATCCTTGGCTTTCTTTTGGCTGCTGCTGGAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114847847 51 + 124281992 GGCT-CCCCTGTGGTGCCTGGATTCTTGGCTTTCTTGTGGCTTCTGCTGGAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 490169 52 - 9212255 GGCTCCCCCTGTAGCACCTGGATCCTTGGCTTTCTTCTAGCTTCTGTTGGAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2909020 52 + 4466143 GGCTCCCCCTGTAGCGCCTGGATCCTTGGCTTTCTTCTGGCTTCTGCTGGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1611942 52 + 5364348 GGCTCCCCCTGTAGCGCCTGGATCCTTGGCTTTCTTCTGGATTCTGCTGGAG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9494733 52 - 31815103 GGCTCCCCCTGGAGCTCCTGGGTCACCGGCTTGCTTTTGGCTTCTGCTGGAG i micMur3.chr21 I 979 I 96 s otoGar3.GL873618 4333901 46 + 7922563 --CTCCCACTGTATTTCCTGGATCA---GCTT-TTTTTGGCCATTGCAGGAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124827855 44 + 151834684 GGCTTCTACCTTAACTCCAG-----CCACCTTATTTCTGAGATCT-CTGG-- i mm10.chr5 I 3 C 0 s canFam3.chr26 33181985 52 - 38964690 GGCAGCCTCTGTAGTTCCTGGGTCACTCATATCTTCATGCCTTCTGCTGGAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 869435 51 - 1116856 CTCTCCCTCTGTAGCTCCTG-ATCACCAGCTACTCTCGGGCTCCGGCTCAAG i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I a score=824073.000000 s hg38.chr12_KI270834v1_alt 101832 84 + 119498 CT-GCCATCGCCCTTCTGTGGGTGTGGAGTGGGTCT--CT-GGAGAGCAC--GGGGT-----TGG------GTTTG-GA--TGCCAA----CCCCTCTCCTCTTCCCT s panTro5.chr12 127387469 84 + 137163284 CT-GCCATCGCCCTTCTGTGGGTGTGGAGTGGGTCT--CT-GGAGAGCAC--GGGGT-----TGG------GTTTG-GA--TGCCAA----CCCCTCTCCTCTTCCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125737767 84 + 135337776 CT-GCCATCGCCCTTCTGTGGGTGTGGAGTGGGTCT--CT-GGAGAGCAC--GGGGT-----TGG------GTTTG-GA--TGCCAA----CCCCTCTCCTCTTCCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8251329 84 - 8369578 CT-GCCATTGCCCTTCTGTGGGTGTGGAGTGGGTCT--CT-GGAGAGCAC--GGGGT-----TGG------GTTTG-GA--TGCCAA----CCCCTCTCCTCTTCCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97909407 87 + 106955855 CTGGCCATCGCCCTTCTGTGGGTGTGGAGTGGGTCT--CT-GGAGAGCACGGGGGGT-----TGG------GTTTG-GA--TGCCAA----CCCCTCTCCTCTTCCCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124024438 88 + 133663169 CTGGCCATCACCTTTCTGT-GGGGTGGAGTGGGTCT--CT-GGAGAGCAC--GGGGT-----TGG------GTTTG-GA--TGCCAACTCCCCCCTCTCCTCCTCCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128272635 88 + 137757926 CTGGCCATCACCTTTCTGT-GGGGTGGAGTGGGTCT--CT-GGAGAGCAC--GGGGT-----TGG------GTTTG-GA--TGCCAACTCCCCCCTCTCCTCCTCCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10671153 88 - 16319837 CTGGCCATCACCTTTCTGT-GGGGTGGAGTGGGTCT--CT-GGAGAGCAC--GGGGT-----TGG------GTTTG-AA--TGCCAACTCCCCCCTCTCCTCCTCCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12295086 88 + 20526591 CTGGCCATCACCTTTCTGT-GGGGTGGAGTGGGTCT--CT-GGAGAGCAC--GGGGT-----TGG------GTTTG-GA--TGCCAACTCCCCCCTCTCCTCCTCCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119266459 88 + 128539186 CTGGCCATCACCTTTCTGTGGGGGTGGAGTGGGTCT--CT-GGAGAGCAC---GGGT-----TGG------GTTTG-GA--TGCCAACTCCCCCCTCTCCTCCTCCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 618029 88 + 6255621 CTGGCCACCACCTTTCTGT-GGGGTAGAGTGGGTCT--CT-GGAGAGCAC--GGGGT-----TGG------GTTTG-GA--TGCCAACTCCCCCCTCTCCTCCTCCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4644349 89 - 8658521 CTGGCCATCACCTTTCTGTGGGGGTGGAGTGGGTCT--CT-GGAGAGCAC--AGGGT-----TGG------GTTTG-GA--TGCCAACTCCCCCCTCTCCTCCTCCCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114847898 89 + 124281992 CTGGCCATCGCCTGTCTGTGGGTGTGGAGTGGGTCT--CT-GAAGAGCAC--GGGGT-----TAG------GTTCA-GG--TGGCAACTCACCCTTCTCCTTCTTTGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 490221 89 - 9212255 CCGGCCATCGCCTTTCCGTGGGCGCGGAGTGGGTCT--CT-GAAGAGCAC--AGGGT-----TGG------GTTTG-GG--CGGCAACTCACCCTTCTCCTCCGCCCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2909072 89 + 4466143 CTGGCCATCGCCTTTCCGTGGGCGTGGAGTGGGTCT--CT-GAAGAGCAC--CGGGT-----TGG------GTTTG-GG--CAGCAACTCACCCTTCTCCTCCGCCCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1611994 89 + 5364348 CTGGCCATCACCTTTCTGTGGGTGTGGAGTGGGTCT--CT-GAAGAGCAC--GGGGT-----TGG------GTTTG-AG--TGGCAACTCACCCTTCTCTTCTTCCTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4333947 90 + 7922563 AGGGTGGTCACTTCTCTGTGCACTGGGAGTGGGTCT--CC-AGAGAGCCC--AGGGTCAGTGTGG------CTTTG-GGATTCCCAA-----CTCTTTCCCCCACCC- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124827899 67 + 151834684 -----------CTGCCTTGAAGTATGGAGTTGGCCTGGCT-TGGGAACAC--TAGTc------------------------caccctctccccaccctctttccc--- i mm10.chr5 C 0 I 35 s canFam3.chr26 33182037 89 - 38964690 TGGGCTCTTCGTTTTCTCGGGGCATGGAGTGGGTCT--CTGGGAGAGCAC--AGGGT-----CAGTGTGACTTTGG-GA--CACTGACTCGTCACTTCTCT------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 869486 79 - 1116856 TGGGCCACTGCTTTTCTGTGGGCTTGGAGTGGGTCT--CC-GG---------GAGAG-----TGG------TTTGGCGA--CACTGA----CTCTTCTCCTGTCCCCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9494785 96 - 31815103 I e proCoq1.NW_012154285v1 6747263 1066 - 9870158 I a score=4545648.000000 s hg38.chr12_KI270834v1_alt 101916 229 + 119498 CTCCCCCGGCGCAGGTGGCCCTGCAGCTGCTGGAGACGGCGGTGGCTCGGGGGCAGTGGCTGATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAAGATCTGGAGAAGTCCCTGGAGAGGATCACCAAGCCCCACCCAGACTTCCGCCTGTGGCTCACCACGGACCCCACCAAGGGCTTCCCCATTGGGATTCTGCAGAAGTCCCTAAAGGTCTGGCTTCAGGA s panTro5.chr12 127387553 229 + 137163284 CTCCCCCGGCGCAGGTGGCCCTGCAGCTGCTGGAGACGGCGGTGGCTCGGGGGCAATGGCTGATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAAGATCTGGAGAAGTCCCTGGAGAGGATCACCAAGCCCCACCCAGACTTCCGCCTGTGGCTCACCACGGACCCCACCAAGGGCTTCCCCATTGGGATTCTGCAGAAGTCCCTAAAGGTCTGGCTTCAGGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125737851 229 + 135337776 CTCCCCCGGCGCAGGTGGCCCTGCAGCTGCTGGAGACGGCGGTGGCTCGGGGGCAATGGCTGATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAAGATCTGGAGAAGTCCCTGGAGAGGATCACCAAGCCCCACCCAGACTTCCGCCTGTGGCTCACCACGGACCCCACCAAGGGCTTCCCCATTGGGATTCTGCAGAAGTCCCTAAAGGTCTGGCTTCAGGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8251413 229 - 8369578 CTCCCCCGGCGCAGGTGGCCCTGCAGCTGCTGGAGACGGCGGTGGCTCGGGGGCAGTGGCTGATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAAGATCTGGAGAAGTCCCTGGAGAGGATCACCAAGCCCCACCCAGACTTCCGCCTGTGGCTCACCACAGACCCCACCAAGGGCTTCCCCATTGGGATTCTGCAGAAGTCCCTAAAGGTCTGGCTTCAGGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97909494 229 + 106955855 CTCCCCCGGCGCAGGTGGCCCTGCAGCTGCTGGAGACGGCGGTGGCTCGGGGGCAGTGGCTGATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAAGATCTGGAGAAGTCCCTGGAGAGGATCACCAAGCCCCACCCCGACTTCCGCCTGTGGCTCACCACGGACCCCACCAAGGGCTTCCCCATTGGGATTCTGCAGAAGTCCCTAAAGGTCTGGCGTCAGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124024526 229 + 133663169 CTCCCCTGGCGCAGGTGGCCCTGCAGCTGCTGGAGACTGCGGTGGCTCGCGGGCAGTGGCTGATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAAGATCTGGAGAAGTCCTTGGAGAGGATCACCAAGCCCCACCCAGACTTCCGCCTGTGGCTCACCACGGACCCCACCAAGGGCTTCCCCATTGGGATTCTGCAGAAGTCCCTAAAGGTCTGGCTTCAGGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128272723 229 + 137757926 CTCCCCTGGCGCAGGTGGCCCTGCAGCTGCTGGAGACTGCGGTGGCTCGCGGGCAGTGGCTGATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAAGATCTGGAGAAGTCCTTGGAGAGGATCACCAAGCCCCACCCAGACTTCCGCCTGTGGCTCACCACGGACCCCACCAAGGGCTTCCCCATTGGGATTCTGCAGAAGTCCCTAAAGGTCTGGCTTCAGGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10671241 229 - 16319837 CTCCCCTGGCGCAGGTGGCCCTGCAGCTGCTGGAGACTGCGGTGGCTCGCGGGCAGTGGCTGATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAAGATCTGGAGAAGTCCTTGGAGAGGATCACCAAGCCCCACCCAGACTTCCGCCTGTGGCTCACCACGGACCCCACCAAGGGCTTCCCCATTGGGATTCTGCAGAAGTCCCTAAAGGTCTGGCTTCAGGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12295174 229 + 20526591 CTCCCCGGGCGCAGGTGGCCCTGCAGCTGCTGGAAACTGCGGTGGCTCGCGGGCAGTGGCTGATGCTGCAGAACTGCCACCTCCTCGTCAAGTGGCTGAAAGATCTGGAGAAGTCCTTGGAGAGGATCATCAAGCCCCACCCAGACTTCCGCCTGTGGCTCACCACGGACCCCACCAAGGGCTTCCCCATTGGGATTCTGCAGAAGTCCCTAAAGGTCTGGCTTCAGGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119266547 229 + 128539186 CTCCCCTGGCGCAGGTGGCCCTGCAGCTGCTGGAGACTGCGGTGGCTCGCGGGCAGTGGCTGATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAAGATCTGGAGAAGTCCTTGGAGAGGATCACCAAGCCCCACCCAGACTTCCGCCTGTGGCTCACCACGGACCCCACCAAGGGCTTCCCCATTGGGATTCTGCAGAAGTCCCTAAAGGTCTGGCTTCAGGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 618117 229 + 6255621 CTCCCCTGGCGCAGGTGGCCCTGCAGCTGCTGGAGACTGCAGTGGCTCGGGGGCAGTGGCTGATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAAGATCTGGAGAAGTCCTTGGAGAGGATCACCAAGCCCCACCCAGACTTCCGCCTGTGGCTCACCACGGACCCCACCAAGGGCTTCCCCATTGGGATTCTGCAGAAGTCCCTAAAGGTCTGGCTTCAGGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4644438 229 - 8658521 CTCCCCTGGCGCAGGTGGCCCTGCAGCTGCTGGAGACTGCGGTGGCTCGCGGGCAGTGGCTGATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAAGATCTGGAGAAGTCCCTGGAGAGGATCACCAAGCCCCACCCAGACTTCCGCCTGTGGCTCACCACGGACCCCACCAAGGGCTTCCCCATCGGGATTCTGCAGAAGTCCCTAAAGGTCTGGCTTCAGGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114847987 228 + 124281992 CTCCCCTGGCGCAGGTGGCCCTGCAGCTGCTGGAGACCGCGGTGGCTCGCGGGCAGTGGCTCATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAAGATCTGGAGAAGTCCTTGGAGAGGATCACCAAGCCCCACCCAGACTTCCGCCTGTGGCTCACCACGGACCCCACCAAGGGATTCCCCATTGGGATTCTGCAGAAGTCCCTGAAGGTCT-GCTTCAGGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 490310 227 - 9212255 CT-CCCTGGCGCAGGTGGCCCTGCAGCTGCTGGGGACTGCGGTGGCTCGCGGGCAGTGGCTTATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGTTGAAAGATCTGGAGAAGTCCCTGGAGAGGATCACCAAGCCCCACCCGGACTTCCGCCTGTGGCTCACCACGGACCCCACCAAGGGCTTCCCCATTGGGATTCTGCAGAAGTCCCTAAAGGTTT-GCTTCAGGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2909161 227 + 4466143 CT-CCCTGGTGCAGGTGGCCCTGCAGCTGCTGGGGACCGCAGTGGCTCGGGGGCAGTGGCTCATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAAGAACTGGAGAAGTCTCTGGAGAGGATCACCAAGCCCCACCCAGACTTCCGCCTGTGGCTCACCACGGACCCCACCAGGGGCTTCCCCATTGGGATTCTGCAGAAGTCCCTAAAGGTCT-GCTTCAGGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1612083 227 + 5364348 CT-CCCCGGCACAGGTGGCCCTGCAGCTGCTGGAGACCGCGGTGGCTCGCGGGCAGTGGCTTATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAAGATCTGGAGAAGTCCCTGGAGAGGATCACCAAGCCCCACCCAGACTTCCGCCTGTGGCTCACCACGGACCCCACCAAGGGCTTCCCCATTGGGATTCTGCAGAAGTCCCTAAAGGTCT-GCTTCAGGA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9494881 229 - 31815103 CTCTCCCCGCGCAGGTGGCCCTGCAGCTGCTGGAGACGGCGGTGGCTCGCGGGCAGTGGCTGATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAGGACCTGGAGAAGTCCCTGGAGCGGATCACCAAGCCCCACCCTGACTTCCGCCTGTGGCTCACCACGGACCCCACGCGGGGCTTCCCCATCGGGATTCTGCAGAAGTCCTTAAAGGTCTGGCTCCAGGA i micMur3.chr21 I 96 I 631 s proCoq1.NW_012154285v1 6748329 229 - 9870158 CTCCCTCCGCGCAGGTGGCGCTGCAGCTGCTGGAGACGGCCGTGGCTCGCGGGCAGTGGCTGATGCTGCAGAACTGCCATCTCCTGGTCAAGTGGCTGAAAGACCTGGAGAAGTCCCTGGAGAGGATCACCAAGCCCCACCCCGACTTCCGCCTGTGGCTCACCACGGACCCCACGCGGGGCTTCCCCGTCGGGATTCTGCAGAAGTCCTTGAAGGTCTGGCTTCGGGA i proCoq1.NW_012154285v1 I 1066 I 132 s otoGar3.GL873618 4334037 229 + 7922563 CTCCTTTGGTACAGTTGGCGCTGCAGCTGCTGGAGACGGCGGTGGCCCGTGGGCAGTGGCTGATGCTGCAGAACTGTCATCTCCTGGTCAAGTGGCTGAAAGACCTGGAGAAGGCCCTGGAGAGGATCACCAAGCCGCACCCCGACTTCCGCCTGTGGCTCACCACTGACCCCACTAAGGGCTTCCCCATTGGGATTCTGCAGAAGTCCTTAAAGGTCTGGCTTCAGGA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124828001 228 + 151834684 CCCTCCTCCTGCAGGTGGCTCTGCAGCTGTTGGAGACCGCAGTGGCTCGTGGACAGTGGCTGATGTTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAGGACCTGGAGAAGTCCCTGGAGAGGATCACCAAGCCGCACCCTGACTTCCGCCTGTGGCTCACCACAGACCCCACCAAGGGCTTCCCCATTGGAATCCTGCAGAAGTCCTTAAAGGTCT-GCCTTGGAA i mm10.chr5 I 35 I 2 s canFam3.chr26 33182126 229 - 38964690 CCCCATCGATGCAGGTGGCTCTGCAGCTGCTGGAGACGGCGGTGGCTCGTGGGCAGTGGCTGATGCTGCAGAACTGCCATCTCCTGGTCCGGTGGCTGAAAGATCTGGAGAAGTCCCTGGAGAGGATCACCAAGCCCCACCCAGATTTCCGCCTGTGGCTCACGACAGACCCCACCAAGGACTTCCCCATTGGAATTCTGCAGAAGTCCTTGAAGGTCTGGCTTTAGGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 869565 226 - 1116856 --CTCTCGGTGTAGGTGGCCCTGCAGTTGCTAGAGACGGCAGTAGCTCGTGGGCAGTGGCTGATGCTCCAGAACTGCCACCTCTTGGTCAAGTGGCTGAAAGATCTGGAGAAGTCCCTGGAGAGGATCAGCAAGCCTCACCCAGACTTTCGCCTCTGGCTCACCACGGACCCCACCAAAGGCTTTCCCATTGGGATTCTGCAGAAGTCCTTAAAGGTCTGGCTCCAAG- i dasNov3.JH568189 C 0 C 0 a score=631106.000000 s hg38.chr12_KI270834v1_alt 102145 80 + 119498 TGGACATCAACATG-CCAGCACGCAGCTTCTCAGAACACCTGCATGCTGCTCTG---GG-----GCC--GGGGTGTGCCTTTGTCTGTGTA s panTro5.chr12 127387782 80 + 137163284 TGGACATCAACATG-CCAGCACGCAGCTTCTCAGAACACCTGCATGCTGCTCTG---GG-----GCT--GGGGCGTGCTTGTGTCTGTGTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125738080 80 + 135337776 TGGACATCAACATG-CCAGCACGCAGCTTCTCAGAACACCTGCATGCTGCTCTG---GG-----GCC--GGGGCCTGCTTGTGTCTGTGTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8251642 80 - 8369578 TGGACATCAACATG-CCAGCACGCAGCTTCTCAGAACACCTGCATGCTGCTCTG---GG-----GCC--GGGGCGTGCTTGTGTCTGTGTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97909723 79 + 106955855 TGGACATCAACATG-CCCGGCACCAGCTTCTCAGACCACCAGCATGTTGCTTTG---GG-----GCC---GGGTGTGCTTGTGTCCATGTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124024755 81 + 133663169 TGGACACCAACATGCCCAGCACCCAGCTTCCCAGACCACCACCATATTGCTGTG---GG-----GCC--AGGGTGTGCATGTGTCTGTGTa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128272952 81 + 137757926 TGGACACCAACATGCCCAGCACCCAGCTTCCCAGACCACCACCATATTGCTGTG---GG-----GCC--AGGGTGTGCATGTGTCTGTGTa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10671470 81 - 16319837 TGGACACCAACATGCCCAGCACCCAGCTTCCCAGACCACCACCATATTGCTGTG---GG-----GCC--AGGGTGTGCATGTGTCTGTGTa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12295403 81 + 20526591 TGGACACCAACATGCCCAGCACCCAGCTTCCCAGACCAGCACCATATTGCTGTG---GG-----GCC--GGGGTGTGCGTGCGTCTGTGTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119266776 81 + 128539186 TGGACACCAACATGCCCAGCACCCAGCTTCTCAGACCACCACCATATTGCTGTG---GG-----GCC--GGGGTGTGCGTGTGTCTGTGTa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 618346 74 + 6255621 TGGACACCAACAT-------ACCCAGCTTCCCAGACCACCACCATATTGCTGTG---GG-----GCC--GGGGTGTGCGTGTGTCTGTGTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4644667 78 - 8658521 TGGACACCAACATGCCCAGCACCCAGCTTCTCAGACCACCACCATATTGCTGTG---GG-----GCC---GGGTGTGCGTGTGTC--TGTa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114848215 83 + 124281992 TGGGCACCACCATGCCCACCACCCAGCTTCTCAGATCACTACCATCTTGCTCTG---GG-----GTGGTGTGGTGTGCGTGTGCATGTGTa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 490537 80 - 9212255 CAGACACCACCATGCCCACCACCCAGCTTCTCAGATCACTACCATTTTGCT------GT-----GTGGTGGGGTGTGTGCGTGCGTGTGTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2909388 83 + 4466143 CGGACACCACCATGCCCACCACCCAGCTTCTCAGATCACTACCATTTTGCTGTG---GG-----GTGGGGTGGGGCGCGTGTGTGTGTGTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1612310 83 + 5364348 CAGACACCACCATGCCCACCACCCAGCTTCTCAGATCACCACCATTTTGCTGTG---GG-----GTGGGGTGGGGTGCGTGTGCGTGTGTA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4334266 50 + 7922563 TAGACACTGATGTA---------------CCCATGTCACTAACGTTTTGCTGTG---GG-----GGG------------------TGTGTA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124828231 77 + 151834684 TCGACACAGATAGG-CTACAGCCCTGCTCCCTGTCACTGCTGCAGAGAGCCCTA---GG-----GTGAAGGGGGATGC-----TCTGTGTA i mm10.chr5 I 2 I 103 s canFam3.chr26 33182355 83 - 38964690 CAAACACC-CCATCCCCACAGCCCCGTGACTCAGATCACCACCATTCTGCCAtgtgtgt-----gca--tgtgtgttcgtgtgcgtgtgtg i canFam3.chr26 C 0 I 4 s dasNov3.JH568189 869791 74 - 1116856 CAAACACCCACACCCCCAG--CCCAGTTTCTTAGATTAGTACCATTCTGCCCTA---GGTATTTGGG--AGAGTGTGCTTA---------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9495110 631 - 31815103 I e proCoq1.NW_012154285v1 6748558 132 - 9870158 I a score=280154.000000 s hg38.chr12_KI270834v1_alt 102225 35 + 119498 GAAATAAACCTTAGGCTGCAGGT-GAAACCTTGCGG s panTro5.chr12 127387862 35 + 137163284 GAAATAAACCTTAGGCTGCAGGT-GAAACCTTGCGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125738160 35 + 135337776 GAAATAAACCTTAGGCTGCAGGT-GAAACCTTGCGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8251722 22 - 8369578 GAAATAAACCTTAGGCTGCAGG-------------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97909802 35 + 106955855 GAAATAAACCTCAGGCTGCAGGT-GAAACCTTGCGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124024836 35 + 133663169 gaaataaacctcaggctgcagtt-gaaacctcgcgg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128273033 35 + 137757926 gaaataaacctcaggctgcagtt-gaaacctcgcgg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10671551 35 - 16319837 gaaataaacctcaggctgcagtt-gaaacctcgcgg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12295484 35 + 20526591 GAAATAAACCTTAGGCTGCAGTT-GAAACCTCGCGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119266857 35 + 128539186 gaaataaaccttaggctgcagtt-gaaacctcgagg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 618420 21 + 6255621 GAAATAAACCTTAGGCTGCA---------------G i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4644745 35 - 8658521 gaaacaaacctgaggctgcagct-gaaacctcgcgg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114848298 33 + 124281992 gaaataagcctca--gtgcagtt-gaaaccttgtgg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 490617 35 - 9212255 GAAATGAGCCTCAGggtgcagtt-gaaacctcgtgg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2909471 35 + 4466143 GAAATGAGCCCCAGggtgcagtt-gaaaccttgtgg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1612393 25 + 5364348 GAAATAA----------Gcagtt-gaaacctcatgg i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4334316 35 + 7922563 GAAA-AAGCCTCAGAGTGCTcttggagaccgcatgg i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33182442 34 - 38964690 CAAATAAACCT-AGGACACAGCC-AGACTCTCTTGG i canFam3.chr26 I 4 C 0 s dasNov3.JH568189 869865 35 - 1116856 GAAATTAACCTGAGGGTGCATTC-AAGACCTCATGG i dasNov3.JH568189 C 0 I 435 e micMur3.chr21 9495110 631 - 31815103 I e mm10.chr5 124828308 103 + 151834684 I e proCoq1.NW_012154285v1 6748558 132 - 9870158 I a score=47938.000000 s hg38.chr12_KI270834v1_alt 102260 6 + 119498 TTGAAA s panTro5.chr12 127387897 6 + 137163284 TTGAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125738195 6 + 135337776 TTGAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8251744 5 - 8369578 -TGAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97909837 6 + 106955855 TTGAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124024871 6 + 133663169 ttgaaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128273068 6 + 137757926 ttgaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10671586 6 - 16319837 ttgaaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12295519 6 + 20526591 TTGAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119266892 6 + 128539186 ttgaaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 618441 6 + 6255621 TTGAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4644780 6 - 8658521 ttgaaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114848331 6 + 124281992 ctgaaa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 490652 6 - 9212255 ctgaaa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2909506 6 + 4466143 ctgaaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1612418 6 + 5364348 ctgaaa i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4334351 4 + 7922563 --acac i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33182476 3 - 38964690 CC---A i canFam3.chr26 C 0 C 0 e micMur3.chr21 9495110 631 - 31815103 I e mm10.chr5 124828308 103 + 151834684 I e proCoq1.NW_012154285v1 6748558 132 - 9870158 I e dasNov3.JH568189 869900 435 - 1116856 I a score=243574.000000 s hg38.chr12_KI270834v1_alt 102266 26 + 119498 CCCTTCTCAATCCCACC----TCTCTCTTT s panTro5.chr12 127387903 24 + 137163284 CCCTTCTCAATCCCAC------CTCTCTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125738201 24 + 135337776 CCCTTCTCAATCCCAC------CTCTATTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8251749 26 - 8369578 CCCTTCTCAATCCCACC----TCTCTCTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97909843 26 + 106955855 CCCTTCTCAATCCCACC----TCTCTCTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124024877 29 + 133663169 cccttctc-atcccatttctctctctcttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128273074 29 + 137757926 cccttctc-atcccatttctctctctcttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10671592 29 - 16319837 cccttttc-atcccatttctctctctcttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12295525 27 + 20526591 CCCTTCTC-ATCCCATT--TCTCTCTCTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119266898 29 + 128539186 cccttctc-atcccatttctctctctcttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 618447 27 + 6255621 CCCTTCTC-ATCCCGTT--TCTCTCTCTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4644786 29 - 8658521 cccttctc-atcccatctctctctctcttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114848337 30 + 124281992 cccttctcaatcccacctctctctctcttc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 490658 30 - 9212255 cccttctcagtcccacctctctctctctcc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2909512 30 + 4466143 cccttctcaaccccacctctctctctcttt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1612424 30 + 5364348 cccttctcaatcccacctctctctctcttc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4334355 30 + 7922563 ccctccccaagcccaccttctcctctcttc i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33182479 30 - 38964690 CCCTTCCCACTTCAATCTCTTCCTTCCCCT i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 870335 24 - 1116856 cccttccctacccca------tctcccttc i dasNov3.JH568189 I 435 C 0 e micMur3.chr21 9495110 631 - 31815103 I e mm10.chr5 124828308 103 + 151834684 I e proCoq1.NW_012154285v1 6748558 132 - 9870158 I a score=339614.000000 s hg38.chr12_KI270834v1_alt 102292 28 + 119498 AGAGGGAGCCGCTGTCCTGGGTTGGGTG s panTro5.chr12 127387927 28 + 137163284 AGAGGGAGCCGCTGTCCTGGGTTGGGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125738225 28 + 135337776 AGAGGGAGCCGCTGTCCTGGGTTGGGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8251775 28 - 8369578 AGAGGGAGCCGCTGTCCTGGGTTGGGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97909869 28 + 106955855 AGAGGGAGCCGCTGTCCTGGGTTGGGTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124024906 26 + 133663169 agagggggctgctgtcctaggt--ggtg i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128273103 26 + 137757926 agagggggctgctgtcctaggt--ggtg i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10671621 26 - 16319837 agagggggctgctgtcctaggt--ggtg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12295552 27 + 20526591 AGAGGGGGCTGCTGTCCTAGGT-GGGTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119266927 27 + 128539186 aaagggggctgctgtcctaggt-gggtg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 618474 27 + 6255621 AGAGGGAGCTGCTGTCCTAGGT-GGGTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4644815 27 - 8658521 agagggggccgctgtcctgggt-gggtg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114848367 28 + 124281992 agagggagctgctgtcctgggtttggtg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 490688 28 - 9212255 agagggagccgctgtcctgggtttggtg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2909542 28 + 4466143 agagggagccgctgtcctgggtttggtg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1612454 28 + 5364348 agagggagccactgtcctgggtttggtg i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6748690 28 - 9870158 AGAGGGAGCCACTGTCCTGAGTTGGGTG i proCoq1.NW_012154285v1 I 132 I 468 s otoGar3.GL873618 4334385 28 + 7922563 agagggagccactgtcctgaattgggtg i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33182511 28 - 38964690 AGAGATAAGCAATGCCCTGCATTGGGTG i canFam3.chr26 I 2 I 15 s dasNov3.JH568189 870359 28 - 1116856 aggcgtaaccactgtcctgtaccagatg i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9495110 631 - 31815103 I e mm10.chr5 124828308 103 + 151834684 I a score=2265613.000000 s hg38.chr12_KI270834v1_alt 102320 246 + 119498 -TTTGTGACTCCCAGGCCTATCTCTACCAATTCTGCATGTGTCCCTAACAATATCTACGCTACTTTTCATAAACTTCA------CGGCC----CC-------CCCCCCCA---------------------CACACAGCCTGCAGTT---CGCTAGT-G------CTGACTGCAGGAGTTTCGCGTGGTTTACATGCCCCATTTAATTTATTCTCCGG-GAAATTCT-TTTGGAAAGGT--TTTGTCAT---------------tctctgtctctctctctctctctGGGG-AGGTGGAGGGAAGACTTTACTTT--- s panTro5.chr12 127387955 239 + 137163284 -TTTGTGACTCCCAGGTCTATCTCTACCAATTCTGCATGTGTCCCTAACAACATCTACGCTACTTTTCATAAACTTCA------CGGCC----CC-------CCCCC--------------------------CACAGCCTGCAGTT---CGCTAGT-G------CTGACTGCAGGAGTTTCAGGTGGTTTACATGCCCCATTTAATTTATTCTCCAG-GAAATTCT-TTTGGAAAGGT--TTTGTCAT---------------tctctg--tctctctctctctctGGGG-AGGTGGAGGGAAGACTTTACTTT--- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125738253 238 + 135337776 -TTTGTGACTCCCAGGCCTATCTCTACCAATTCTGCATGTGTCCCTAACAACATCTACGCTACTTTTCATAAACTTCA------CGGCC----CC-------CCCCA--------------------------C-CAGCCTGCAGTT---CGCTAGT-G------CTGACTGCAGGAGTTTCAGGTGGTTTACATGCCCCATTTAATTTATTCTCCAG-GAAATTCT-TTTGGAAAGGT--TTTGTCAT---------------Cctctg--tctctctctctctctGGGG-AGGTGGAGGGAAGACTTTACTTT--- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8251803 234 - 8369578 -TTTGTGACTCCCAGGCCTATCTCTACCAATTCTGCATGTGTCCCTAACAATATCTACGCTACTTTTCATAAACTTCA------CGGCC----CC-------CCCCCCCC-----------------------CACAGCCTGCAGTT---CGCTAGT-G------CTGACTGCAGGAGTTTCGGGTGGTTTACATGCCCCATTTAATTTATTCTCCAG-GAAATTCT-TTTGGAAAGGT--TTTGTCAT---------------TCTCTC---------CTCTCTCTGGGG-AGGTGGAGGGAAGAC-TTACTTT--- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97909897 234 + 106955855 -TTTGTGACTCCCAGGCCTATCTCTACCAATTCTGCATGTGTCCCTAACAATATCTACGCTACTTTTCATAAACTTCA------TGGGC----TC-------CC-----------------------------CACAGCCTGCAGTT---CTCTCGT-G------CTGACTGCAGAAGTTTCGGGTGGCTTACATGCCCCATTTAATTTATTCTCCAG-GAAATTCT-TTTGGAAAGGT--TTTGTCAT---------------tctctg----tctctctctctctGGGG-AGGTGGAGGGAAGACTTTACTTT--- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124024932 254 + 133663169 -tttgtgactcccaggcctatctctaccaattctgcatgtgtccctaacagtatctaggctgcttttcataaacttca------tGCCC----CCACCGCCACCCCCCCCACCAC----------------CCCATAGCCTGCAGTT---CTCTAGT-G------CTGACTGCAGAAGTTTCAGGTGGTTTACATGCCCCATTTAATTTATTCTCCAG-CAAATTCT-TTTGGAAAGGT--TTTGTCAT---------------TCCCCG----TCTCTCTCTCTCTGGGG-AGGTGGAGGGAAGACTTGACTTT--- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128273129 254 + 137757926 -tttgtgactcccaggcctatctctaccaattctgcatgtgtccctaacagtatctaggctgcttttcataaacttca------tGCCC----CCACCGCCACCCCCCCCACCAC----------------CCCATAGCCTGCAGTT---CTCTAGT-G------CTGACTGCAGAAGTTTCAGGTGGTTTACATGCCCCATTTAATTTATTCTCCAG-CAAATTCT-TTTGGAAAGGT--TTTGTCAT---------------TCCCCG----TCTCTCTCTCTCTGGGG-AGGTGGAGGGAAGACTTGACTTT--- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10671647 254 - 16319837 -tttgtgactcccaggcctatctctaccaattctgcatgtgtCCCTAACAGTATCTAGGCTGCTTTTCATAAACTTCA------TGCCC----CCACCGCCACCCCCGCCACCAC----------------CCCATAGCCTGCAGTT---CTCTAGT-G------CTGACTGCAGAAGTTTCAGGTGGTTTACATGCCCCATTTAATTTATTCTCCAG-CAAATTCT-TTTGGAAAGGT--TTTGTCAT---------------TCCCCG----TCTCTCTCTCTCTGGGG-AGGTGGAGGGAAGACTTGACTTT--- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12295579 253 + 20526591 -TTTGTGACTCCCAGGCCTCTCTCTACCAATTCTGCATGTGTCCCTAACAGTATCTAGGCTGTTTTTCATAAACTTCA------TGccc----ccaccgcc-cccccacccccac----------------cccAGAGCCTGCAGTT---CTCTAGT-G------CTGACTGCTGAAGTTTCGGGTGGTTTACATGCCCCATTTAATTTATTCTCCAG-CAAACTCT-TTTGGAAAGGT--TTTGTCAC---------------TCCCCG----TCTCTCTCTCTCTGGGG-AGGTGGAGGGAAGACTTGACTTT--- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119266954 249 + 128539186 -tttgtgactcccaggcctatctctaccaattctgcatgtgtccctaacagtatctaggctgcttttcataaacttca------tGCTC----CC----CC-CTCCGCCCGCCAC----------------CCCATAGCCTGCAGTT---CTCTAGT-G------CTGACTGCAGAAGTTTCGGGTGGTTTACATGCCCCATTTAATTTATTCTCCAG-CAAATTCT-TTTGGAAAGGT--TTTGTCAT---------------TCCCCA----TCTCTCTCTCTCTGGGG-AGGTGGAGGGAAGACTTTACTTT--- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 618501 253 + 6255621 -TTTGTGACTCCCAGGCCTCTCTCTACCAATTCTGCATGTGTCCCTAACAGTATCTAGGCTGCTTTTCATAAACTTCA------TGccc----ccaccgcc-cccccacccccac----------------cccAGAGCCTGCAGTT---CTCTAGT-G------CTGACTGCAGAAGTTTCGGGTGGTTTACATGCCCCATTTAATTTATTCTCCAG-CAAATTCT-TTTGGAAAGGT--TTTGTCCT---------------TCCCCG----TCTCTCTCTCTCTGGGG-AGGTGGAGGAAAGACTTGACTTT--- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4644842 240 - 8658521 -tttgtgaaccccaggcctatctctaccaattctgcatgtgtccctaacaatatctaggctgcttttcatAAACGTCA------TGCC--------------CTCCCGCCCCTAC----------------CCCATAGCCTGCAGTT---CTCTAGT-G------CTGACTGCAGAAGTTTTGGGTGGTTTACATGCCCCATTTAATTTATTCTCCAG-CAAATTCT-TTTGGAAAGGT--TTTGTCAT---------------TCCCCG--------TCTCTCTCTGGGG-AGGTGGAGGGAAGACTTTACTTT--- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114848395 249 + 124281992 -tctgtgactcccgggcctgtctctaccaattctgcatgtgtTCCTAACAATATCTAGGCTGCTGTTCAT-AACTTCA------TGGGC----CC-------ACC----------------------------TGCAGCCTGCAGGA---CTCTAGT-G------CTGATGGCAGAAGTTTTGGGTGGTTTATATGCCCCATTTAATTTATTCTCCAG-GGTATTCT-TCTGGAAGGGT--TTTGTGTCAtctctctctctcaatctctc----tctttctctttctGGGG-AGGTGGAGGGAAGACTTTACttt--- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 490716 233 - 9212255 -tctgtgactcccgggcctgtctctaccaattcttcatgtgtccctaacaatatctagGCTGCTGTTCAT-AACTTCA------TGGGC----CC-------ACC----------------------------TGCAGCCTGCAGGA---CTCTAGT-G------CTGACGGCCGAAGTTTTGGGTGGTTTACACGCCCCATTTAATTTATTCTCCAG-GGAATTCT-TCTGGAAAGGT--TTTGCGTC----------------CCCTC----TCTTTCTCTCTCTGGGG-AGGCGGAGGGAAGATTTTACGTT--- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2909570 229 + 4466143 -tctgtgactcccgggcctgtctctaccaattctgcatgtgtccctaacaatatctagGCTGCTGCTCAT-AAGTTCA------TGGGC----CC-------ACC----------------------------CGCAGCCTGCAGGA---CTCTAGT-G------CTGACAGCCGAAGTTTCGGGTGGTTTACACACCCCATTTAATTTATTCTCCAG-GGAATTAT-TCTGGAGAGGT--TTTGCGTC--------------------C----CCCCTCTCTCTCTGGGG-AGGCGGAGGGAAGACTTGACttt--- i cebCap1.NW_016107484v1 C 0 I 307 s aotNan1.NW_018491581v1 1612482 231 + 5364348 -tctgtgactcccgggcctatctctaCCAATTCCGCATGTGTCCCTAACACTATCTGGGCTGCTGTTCAT-AACTTCA------TGGGC----CC-------ACC----------------------------CGCAGCCTGCAGGA---CTCTAGT-G------CTGACGGCAGAAGTTTCGGGTGGTTTATATGCCCTATTTAATTTATTCTCCAG-GGAATTCT-TCTGGAAAGGT--TTTGTGTC------------------CTC----TCTCTCTCTCTCTGGGG-AGGCAGAGGGAAGACTTTACTTT--- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4334413 240 + 7922563 -tttgtgattcctaagcctgtgttt-ctactctGGCACGTGTCCCTCACAAT-CCTAAGCCAGTTTTGTTTACTTGCA------TGTACTGAGCC-------TCCCCTTTATTGCTTGTGATAG--ACCCACCCACAG-TGGCAGTG-----------G------CTGGGTGCAGAAGTT--GAGTGGATTCCTTGCCTCGTGTAA-----TCTCTAG--GAATTCT-TTTGGAAAGGT--TTTGTCAT--------------------------CTCTCTCTCTCAGGGGCCGATGGACggtgtaactgcttt---- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33182554 228 - 38964690 -ATTATGACTCTCCGGCCTGCCTTTACCACTTCCGCATGTATCCAAAACAAGATCTAGGTTAGTTTTCCTATACTTC----------------CC-------ATT--------------------------TATTAAACCTTCTTTTTATCTCTAAT-GATAGGCCCACCCACATCTAGCTCTGGTGTCTTATATGCCCCACTGAACTTACTCTCCAGAGAAGTTCTGTTTGGAAATGTCATCTGTCAT------------------CAG-----------------GGGC-aggtagagggaaaactttactac--- i canFam3.chr26 I 15 I 3 s dasNov3.JH568189 870387 270 - 1116856 ccttatta-tcccagctctgcctttaccatttatgtgtggatccataacaacagctaggttagctttcatgtattttaaaTGATTAAAC----TA-------TCTCTTTTAGTGCTAATGATAGTCTCCTCCCCACAGCCTGCAGTG---ATCTAATAG------TTATGTGCAGGAGTTTCAAGTGGCTTACATGCTTCATTTAATTTGTTCTTCAG-AGAATTCT-TCTGGAAAGGT--TTT----T---------------TCCATC----TCTTTCTCTctctgggacatgtggagggaagacttaaccacttc i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9495110 631 - 31815103 I e mm10.chr5 124828308 103 + 151834684 I e proCoq1.NW_012154285v1 6748718 468 - 9870158 I a score=27437.000000 s hg38.chr12_KI270834v1_alt 102566 6 + 119498 CATTTT- s panTro5.chr12 127388194 6 + 137163284 CATTTT- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125738491 6 + 135337776 CATTTT- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8252037 6 - 8369578 CATTTT- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97910131 6 + 106955855 CATTTT- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124025186 5 + 133663169 CATTC-- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128273383 5 + 137757926 CATTC-- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10671901 5 - 16319837 CATTC-- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12295832 5 + 20526591 CATTC-- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119267203 5 + 128539186 CATTC-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 618754 5 + 6255621 CATTC-- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4645082 5 - 8658521 CATTC-- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114848644 5 + 124281992 cattt-- i calJac3.chr9 C 0 I 268 s saiBol1.JH378194 490949 5 - 9212255 CATTT-- i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1612713 5 + 5364348 CATTT-- i aotNan1.NW_018491581v1 C 0 I 1 s otoGar3.GL873618 4334653 5 + 7922563 cattt-- i otoGar3.GL873618 C 0 I 1 s canFam3.chr26 33182785 5 - 38964690 cattt-- i canFam3.chr26 I 3 I 1 s dasNov3.JH568189 870657 6 - 1116856 cattt-t i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9495110 631 - 31815103 I e mm10.chr5 124828308 103 + 151834684 I e proCoq1.NW_012154285v1 6748718 468 - 9870158 I e cebCap1.NW_016107484v1 2909799 307 + 4466143 I a score=5624.000000 s hg38.chr12_KI270834v1_alt 102572 3 + 119498 ATA s panTro5.chr12 127388200 3 + 137163284 ATA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125738497 3 + 135337776 ATA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8252043 3 - 8369578 ATA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97910137 3 + 106955855 ATA i nomLeu3.chr10 C 0 C 0 s aotNan1.NW_018491581v1 1612719 3 + 5364348 ATA i aotNan1.NW_018491581v1 I 1 C 0 s otoGar3.GL873618 4334659 3 + 7922563 cta i otoGar3.GL873618 I 1 C 0 s canFam3.chr26 33182791 3 - 38964690 gca i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 870663 3 - 1116856 aca i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9495110 631 - 31815103 I e mm10.chr5 124828308 103 + 151834684 I e proCoq1.NW_012154285v1 6748718 468 - 9870158 I e cebCap1.NW_016107484v1 2909799 307 + 4466143 I e saiBol1.JH378194 490954 0 - 9212255 C e calJac3.chr9 114848649 268 + 124281992 I e colAng1.NW_012116043v1 4645087 0 - 8658521 C e manLeu1.NW_012103587v1 618759 0 + 6255621 C e chlSab2.chr11 119267208 0 + 128539186 C e cerAty1.NW_012001186v1 12295837 0 + 20526591 C e macNem1.NW_012010578v1 10671906 0 - 16319837 C e macFas5.chr11 128273388 0 + 137757926 C e rheMac8.chr11 124025191 0 + 133663169 C a score=19026.000000 s hg38.chr12_KI270834v1_alt 102575 3 + 119498 TAT s panTro5.chr12 127388203 3 + 137163284 TAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125738500 3 + 135337776 TAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8252046 3 - 8369578 TAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97910140 3 + 106955855 TAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124025191 3 + 133663169 TAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128273388 3 + 137757926 TAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10671906 3 - 16319837 TAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12295837 3 + 20526591 TAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119267208 3 + 128539186 TAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 618759 3 + 6255621 TAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4645087 3 - 8658521 TAT i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 490954 3 - 9212255 TAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2910106 3 + 4466143 TAT i cebCap1.NW_016107484v1 I 307 C 0 s canFam3.chr26 33182794 3 - 38964690 ttt i canFam3.chr26 C 0 C 0 e micMur3.chr21 9495110 631 - 31815103 I e mm10.chr5 124828308 103 + 151834684 I e proCoq1.NW_012154285v1 6748718 468 - 9870158 I e dasNov3.JH568189 870666 0 - 1116856 C e otoGar3.GL873618 4334662 0 + 7922563 C e aotNan1.NW_018491581v1 1612722 0 + 5364348 C e calJac3.chr9 114848649 268 + 124281992 I a score=2212016.000000 s hg38.chr12_KI270834v1_alt 102578 217 + 119498 AGTAAAGGATCTCATGGTTCAG-AGGAAGGTCAAAGACTC--TT------GACCCTTGAC---CCT---------G---AGAGCCAGAAC---ATCTAGTCCTTTAACTTCTCAGCCTGGGCCCTGGACAAGAGACTTTAGCTATTGGAGGTCTCAGACAGATGGCTCCGTAGAGAGGA-AGGA-AAGC--GCAG-TGCCTGCATTGTGCACACTCTTCCAAGC-----TTGTGGGCCTGCGGTCTCCATCACT s panTro5.chr12 127388206 217 + 137163284 AGTAAAGGAACTCATGGTTCAG-AGGAAGGTCAAGGACTC--TT------GACCCTTGAC---CCT---------G---AGAGCCAGAAC---ATCTAGTCCTTTAACTTCTCAGCCTGGGCCCTGGACAAGAGACTTTAGCTATTGGAGGTCTCAGACAGATGGCTCCGTAGAGAGGA-AGGA-AAGC--GCAG-TGCCTGCATTGTGCACACTCTTCCAAGC-----TTGTGGGCCTGCGGTCTCCATCACT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125738503 217 + 135337776 AGTAAAGGAACTCATGGTTCAG-AGGAAGGTCAAAGACTC--TT------GACCCTTGAC---CCT---------G---AGAGCCAGAAC---ATCTAGTCCTTTAACTTCTCAGCCTGGGCCCTGGACAAGAGACTTTAGCTATTGGAGGTCTCAGACAGATGGCTCCGTAGAGAGGA-AGGA-AAGC--GCAG-TGCCTGCATTGTGCACACTCTTCCAAGC-----TTGTGGGCCTGCGGTCTCCATCACT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8252049 216 - 8369578 AGTAAAGGATCTCATGGTTCAG-AGGAAGGTCAAAGACTC--TT------GACCCTTGAC---CCT---------G---AGAGCCAGAAC---ATCTAGTCCTTTAACTTCTCAGCCTGGG-CCTGGACAAGAGACTTTAGCTATTGGAGGTCTCAGACGGATGGCTCCGTAGAGAGGA-AGGA-AAGC--GCAG-TGCCTGCATTGTGCACACTCTTCCAAGC-----TTGTGGGCCTGCGGTCTCCATCACT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97910143 217 + 106955855 AGTAAAGGATCTCATGGTTCAG-AGGAAGGTCAAAGACTC--TT------GACCCTTGAC---CCT---------G---AGAGCCAGAAC---ATCTAGTCCTTTAACTTCTCAGCCTGGGCCCTGGACAAGAGACTTTAGCTATTGGAGGTCTCAGACAGATGGCTCCATAGAGAGGA-AGGA-AAGC--GCAG-TGCCTGCGTTGTGCACACTCTTCCAAGC-----TTGTGGGTCTGCGGTCTCCATCACT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124025194 217 + 133663169 AGTAAAGGATCTCATGGTTCAG-AGGAAGGTCAAAGACCC--TT------GATCCTTGAC---CCT---------G---AGAGCTAAAAC---ATCTAGTCCTTTAACTTCTTAGCCTGGGCCCTGGACAAGAGACTTTAGCTATCGGAGGTCTCAGACAGATGGCGCTGCAGAGAGGA-AGGA-AAGC--GCAG-TGCCTGCACTGTGCACACTCTTCCAAGC-----TTGTGGGCCTGCGGTCTCCATCACT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128273391 217 + 137757926 AGTAAAGGATCTCATGGTTCAG-AGGAAGGTCAAAGACCC--TT------GATCCTTGAC---CCT---------G---AGAGCTAAAAC---ATCTAGTCCTTTAACTTCTTAGCCTGGGCCCTGGACAAGAGACTTTAGCTATCGGAGGTCTCAGACAGATGGCTCTGCAGAGAGGA-AGGA-AAGC--GCAG-TGCCTGCACTGTGCACACTCTTCCAAGC-----TTGTGGGCCTGCGGTCTCCATCACT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10671909 217 - 16319837 AGTAAAGGATCTCATGGTTCAG-AGGAAGGTCAAAGACCC--TT------GATCCTTGAC---CCT---------G---AGAGCTAAAAC---ATCTAGTCCTTTAACTTCTTAGCCTGGGCCCTGGACAAGAGACTTTAGCTATCGGAGGTCTCAGACAGATGGCTCTGCAGAGAGGA-AGGA-AAGC--GCAG-TGCCTGCACTGTGCACGCTCTTCCAAGC-----TTGTGGGCCTGCGGTCTCCATCACT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12295840 217 + 20526591 AGTAAAGGATCTCATGGTTCAG-AGGAAGGTCAAAGACCC--TT------GATCCTTGAC---CCT---------G---AGCGCTAGAAC---ATCTGGTCCTTTAAATTCTTAGCCTGGGCCCTGGACAAGAGACTTTAGCTATCGGAGGCCTCAGACAGACGGCTCCGCAGAGAGGA-AGGA-AAGC--GCAG-TGCCTGCATTGTGCACACTCCTCCAAGC-----TTGTGGGCCTGCGGTCTCCGTCACT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119267211 217 + 128539186 AGTAAAGGATCTCATGGTTCAG-AGGAAGGTCAAAGACCC--TT------GATCCTTGAC---CGT---------G---AGAGCTAGAAC---ATCTAGTCCTTTAACTGCTTAGCCTGGGCCCTGGACAAGAGACTTTAGCTATTGGGGGTCTCAGACAGATGGCTCCGCAGAGAGGA-AGGA-AAGC--GCAG-TGCCTGCACTGTGCACACTCTTCCAAGC-----TTGTGGGCCTGTGGTCTCCATCACT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 618762 214 + 6255621 AGTAAAGGATCTCATGGTTCAG-AGGAAGGTCAAAGACCC--TT------GATCCTTGAC---CCT---------G---AGCGCTAGAAC---ATCGAGTCCTTTAACTTCTTAGCCTGGGCCCTGGACAAGAGACTTTAGCTATCGGAGG-CTCAGACAGACGGCTCCGC--AGAGGA-AGGA-AAGC--GCAG-TGCCTGCATTGTGCACACTCTTCCAAGC-----TTGTGGGCCTGCGGTCTCCGTCACT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4645090 217 - 8658521 AGTAAAGGATCTCATGGTTCAG-AGGAAGGTCAAAGACCC--TT------GATCCTTGAC---CCT---------G---AGAGCTAGAAC---ATCTAGTCCTTTAACTTCTTAGCCTGGGCCCTGGACAAGAGACTTTAGCTACTGGAGGTCTCAGACAGATGGCTCCGCAGAGAGGA-AGGA-AAGC--GCAG-TGCCTGCATTGTGCATGCTCTTCCAAGC-----TTGTGGGCCTGCGGTCTCCATCACT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114848917 203 + 124281992 aGTAAAGGATCTCATGGTTCAG-AGG-AGGTCAAAGAC---------------CCTTGAC---CCT---------G---AGAGCTAGAAC---AT---GTCCTTTCACTTCTTAGCCT-GGCCCTGGACAAGAGACTTTACCTTTTGGAGGTCTCGGACAGATGGCTCCATAAAGAT---GGGA-AAGC--CAAG-AGGCTACGTTCTGCACACTCCTCGAAGC-----TCGTGGGCCTGCGGTTTCCATCACA i calJac3.chr9 I 268 C 0 s saiBol1.JH378194 490957 203 - 9212255 AGTAAAGGATCTCATGGTTCAG-AGG-AGGTCAAAGAC---------------CCTTGAC---CCT---------G---AGAGCTAGAAC---TT---GTCCTTTCACTTCTTAGCCTGGGCCCTGGACAAGAGAC--TACCTGTTGGAGGTCTCGGACAGATGGCTCCATAAAGATGAAGGGA-AAGC--CAAG-GGCCGACATTCTGCACGCTCCTCGAAGC-----TCGTGGGCCTGCAGTTTCCAT--CA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2910109 206 + 4466143 AGTAAAGGATCTCATGGTTCAG-AGG-AGGTCAAAGAC---------------CTTTGAC---CCT---------G---AGAGCTAG-AC---AT---GTCCTTTCACTTCTTAGCCTGGGCCCTGGACAAGAGACTTTAGCTGTTGGAGGTCTTGGACAGATGGCTACATGAAGATGAAGGGA-AAGC--CAAG-AGCCTACATTCTGCACCCTCCTCGAAGC-----TCGTGGGCCTGCCGTTTCCATCACA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1612722 206 + 5364348 -GTAAAGGATCTCATGGTTCAG-AGG-AGGTCAAAGAC---------------CCTTGAC---CCC---------G---AGAGCTAGAAC---AT---GTCCTTTCACTTCTTAGCCTGGGCCCTGGACAAGAGGCTTTACCTGTTGGAGGTCTCGGACGGATGGCTCCATAAACATGAAGGGA-AAGC--CAAG-AGCCTACGTTTTGCACACTCCTCGAAGC-----TCGTGGGCCTGCAGTTTCCATCACA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4334662 228 + 7922563 -gttgaggatcccatggttcac-agagaggtcaaagaacc--ttcacagggtccctcgacaagcag---------gagcagaagtaggac---ATCTAGTCCTTTAACTTTTTTATCTGGGCCCTTGACAAGAGACTTTGACTATTGGGGAACTAGGACATTTGGCTCCGAAAAGAT---AGAG-AAGC---CAG-AGCCTGCTCTTTGCACTCTCCTC-AAGC-GGTACTAGAGGCCTGCAGTTTCCATGGGG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33182797 225 - 38964690 ----gaagattccatggcccaa-aga-agctcaagaacct--tc---------tttgggc---catttgatgaaca---ggagccagaacagtatctagttccttaacttcTT----TGGGCCCTGAACGAGAGACTTTTGCTCTCTGGGGAACGGGGAAGGTGGCCACACAGAGGTGAAGGGA-AAGCCTGAGA-TGTCTACATTTTGCACGCTCTTCCAAGCTGGACTCAAGGGCCTGTGGTTTCTGTAATG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 870666 229 - 1116856 -gtttaggctcccaaggttcagcaagaggtttaaagggtcaact------gacaagcaag---tgg---------c---agagctaggactaaatctagttctttaactccCTCATCAGGGTACTAAACAAGATACTTTTGCTGTTAGGAGAATAGGAAAGGTTGTTACATAAAGATGG-AGGACAAGC--CAAGAAGTCTACATTTTTCACACTCTTCAAAGCTGTCCTTAAGCCCTTCCAGTTTCTGCCATG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9495110 631 - 31815103 I e mm10.chr5 124828308 103 + 151834684 I e proCoq1.NW_012154285v1 6748718 468 - 9870158 I a score=26132.000000 s hg38.chr12_KI270834v1_alt 102795 3 + 119498 GTG s panTro5.chr12 127388423 3 + 137163284 GTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125738720 3 + 135337776 GTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8252265 3 - 8369578 GTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97910360 3 + 106955855 GTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124025411 3 + 133663169 GTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128273608 3 + 137757926 GTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10672126 3 - 16319837 GTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12296057 3 + 20526591 GTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119267428 3 + 128539186 GTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 618976 3 + 6255621 GTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4645307 3 - 8658521 GTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114849120 3 + 124281992 GTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 491160 3 - 9212255 GTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2910315 3 + 4466143 GTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1612928 3 + 5364348 GTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4334890 3 + 7922563 GGG i otoGar3.GL873618 C 0 I 5 s mm10.chr5 124828411 3 + 151834684 GTC i mm10.chr5 I 103 C 0 s canFam3.chr26 33183022 3 - 38964690 ATT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 870895 3 - 1116856 ATT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9495110 631 - 31815103 I e proCoq1.NW_012154285v1 6748718 468 - 9870158 I a score=-4100.000000 s hg38.chr12_KI270834v1_alt 102798 1 + 119498 T s panTro5.chr12 127388426 1 + 137163284 T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125738723 1 + 135337776 T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8252268 1 - 8369578 T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97910363 1 + 106955855 C i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124025414 1 + 133663169 C i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128273611 1 + 137757926 C i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10672129 1 - 16319837 C i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12296060 1 + 20526591 C i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119267431 1 + 128539186 C i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 618979 1 + 6255621 C i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4645310 1 - 8658521 C i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114849123 1 + 124281992 G i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 491163 1 - 9212255 A i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2910318 1 + 4466143 A i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1612931 1 + 5364348 G i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124828414 1 + 151834684 T i mm10.chr5 C 0 C 0 s canFam3.chr26 33183025 1 - 38964690 T i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 870898 1 - 1116856 T i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9495110 631 - 31815103 I e proCoq1.NW_012154285v1 6748718 468 - 9870158 I e otoGar3.GL873618 4334893 5 + 7922563 I a score=4485619.000000 s hg38.chr12_KI270834v1_alt 102799 232 + 119498 GTTTTCTTCTCTTCTGAAGGTTGTCACCGAGCCACCCAATGGGCTGAAACTCAACATGAGGGCAACTTACTTCAAGATCTCTCACGAAATGCTGGACCAGTGCCCGCACCCTGCCTTCAAGCCGCTGGTCTACGTGCTGGCGTTCTTTCATGCTGTGGTGCAGGAGAGAAGGAAGTTTGGGAAGATTGGCTGGAACGTGTACTATGACTTCAATGAGTCTGACTTCCAGGTG s panTro5.chr12 127388427 232 + 137163284 GTTTTCTTCTCTTCTGAAGGTTGTCACCGAGCCACCCAATGGGCTGAAACTCAACATGAGGGCAACTTACTTCAAGATCTCTCACGAAATGCTGGACCAGTGCCCGCACCCTGCCTTCAAGCCGCTGGTCTACGTGCTGGCGTTCTTTCATGCTGTGGTGCAGGAGAGAAGGAAGTTTGGGAAGATTGGCTGGAACGTGTACTATGATTTCAATGAGTCTGACTTCCAGGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125738724 232 + 135337776 GTTTTCTTCTCTTCTGAAGGTTGTCACCGAGCCACCCAATGGGCTGAAACTGAACATGAGGGCAACTTACTTCAAGATCTCTCACGAAATGCTGGACCAGTGCCCGCACCCTGCCTTCAAGCCGCTGGTCTACGTGCTGGCGTTCTTTCATGCTGTGGTGCAGGAGAGAAGGAAGTTTGGGAAGATTGGCTGGAACGTGTACTATGATTTCAATGAGTCTGACTTCCAGGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8252269 232 - 8369578 GTTTTCTTCTCTTCTGAAGGTTGTCACCGAGCCACCCAATGGGCTGAAACTCAACATGAGGGCAACTTACTTCAAGATCTCTCACGAAATGCTGGACCAGTGCCCGCACCCTGCCTTCAAGCCGCTGGTCTATGTGCTGGCGTTCTTTCATGCTGTGGTGCAGGAGAGAAGGAAGTTTGGGAAGATTGGCTGGAACGTGTACTATGATTTCAATGAGTCTGACTTCCAGGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97910364 232 + 106955855 GTTTTCTTCTTTTCTGAAGGTTGTCACCGAGCCGCCCAATGGGCTGAAACTCAACATGAGGGCAACTTACTTCAAGATCTCTCACGAAATGCTGGACCAGTGCCCGCACCCTGCCTTCAAGCCTCTGGTCTACGTGCTGGCGTTCTTTCATGCTGTGGTGCAGGAGAGAAGGAAGTTCGGGAAGATTGGCTGGAACGTGTACTATGACTTCAATGAGTCTGACTTCCAGGTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124025415 232 + 133663169 GTTTTCTTCTCTTCTGAAGGTTGTCACTGAGCCGCCCAATGGGCTGAAACTCAACATGAGGGCAACTTACTTCAAGATCTCTCACGAAATGCTGGACCAGTGCCCGCACCCTGCCTTCAAGCCGCTGGTCTACGTGCTAGCATTCTTTCATGCTGTGGTGCAGGAGAGAAGGAAGTTTGGGAAGATTGGCTGGAACGTGTACTATGACTTCAATGAGTCTGACTTCCAGGTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128273612 232 + 137757926 GTTTTCTTCTCTTCTGAAGGTTGTCACTGAGCCGCCCAATGGGCTGAAACTCAACATGAGGGCAACTTACTTCAAGATCTCTCACGAAATGCTGGACCAGTGCCCGCACCCTGCCTTCAAGCCGCTGGTCTACGTGCTAGCATTCTTTCATGCTGTGGTGCAGGAGAGAAGGAAGTTTGGGAAGATTGGCTGGAACGTGTACTATGACTTCAATGAGTCTGACTTCCAGGTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10672130 232 - 16319837 GTTTTCTTCTCTTCTGAAGGTTGTCACTGAGCCGCCCAATGGGCTGAAACTCAACATGAGGGCAACTTACTTCAAGATCTCTCACGAAATGCTGGACCAGTGCCCGCACCCTGCCTTCAAGCCGCTGGTCTACGTGCTAGCATTCTTTCATGCTGTGGTGCAGGAGAGAAGGAAGTTTGGGAAGATTGGCTGGAACGTGTACTATGACTTCAATGAGTCTGACTTCCAGGTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12296061 232 + 20526591 GTTTTCTTCTCTTCTGAAGGTTGTCACTGAGCCGCCCAATGGGCTGAAACTCAACATGAGGGCAACTTACTTCAAGATCTCTCACGAAATGCTGGACCAGTGCCCGCACCCTGCCTTCAAGCCGCTGGTCTACGTGCTGGCATTCTTTCATGCTGTGGTGCAGGAGAGAAGGAAGTTTGGGAAGATTGGCTGGAACGTGTACTATGACTTCAATGAGTCTGACTTCCAGGTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119267432 232 + 128539186 GTTTTCTTCTCTTCTCAAGGTTGTCACCGAGCCGCCCAATGGGCTGAAACTCAACATGAGGGCAACTTACTTCAAGATCTCTCACGAAATGCTGGACCAGTGCCCGCACCCTGCCTTCAAGCCGCTGGTCTACGTGCTGGCATTCTTTCATGCTGTGGTGCAGGAGAGAAGGAAGTTTGGGAAGATTGGCTGGAACGTGTACTATGACTTCAATGAGTCTGACTTCCAGGTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 618980 232 + 6255621 GTTTTCTTCTCTTCTGAAGGTTGTCACTGAGCCGCCCAATGGGCTGAAACTCAACATGAGGGCAACTTACTTCAAGATCTCTCACGAAATGCTGGACCAGTGCCCGCACCCTGCCTTCAAGCCGCTGGTCTACGTGCTGGCATTCTTTCATGCTGTGGTGCAGGAGAGAAGGAAGTTTGGGAAGATTGGCTGGAACGTATACTATGACTTCAATGAGTCTGACTTCCAGGTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4645311 232 - 8658521 GTTTTCTTCTCTTCTGAAGGTTGTCACTGAGCCGCCCAATGGGCTGAAACTCAACATGAGGGCAACTTACTTCAAGATCTCTCACGAAATGCTGGACCAGTGCCCACACCCTGCCTTCAAGCCGCTGGTCTACGTGCTGGCATTCTTTCATGCTGTGGTGCAGGAGAGAAGGAAGTTTGGGAAGATTGGCTGGAACGTGTACTATGACTTCAATGAGTCTGACTTCCAGGTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114849124 232 + 124281992 GTTTTCTTCTCTTCTGAAGGTTGTCACTGAGCCGCCCAATGGGCTGAAACTCAACATGAGGGCAACTTACTTCAAGATCTCTCATGAAATGCTGGACCAGTGCCCGCACCCTGCCTTCAAGCCGCTGGTCTACGTGCTGGCGTTCTTCCATGCTGTGGTGCAGGAGAGAAGGAAGTTCGGGAAGATTGGCTGGAACGTGTACTATGACTTCAATGAGTCTGACTTCCAGGTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 491164 232 - 9212255 GTTTTCTTCTCTTCTGAAGGTTGTCACCGAGCCGCCCAATGGGCTGAAACTCAACATGAGGGCGACTTACTTCAAGATCTCTCACGAAATGCTGGACCAGTGCCCGCACCCGGCCTTCAAGCCGCTGGTCTATGTGCTGGCGTTCTTCCATGCCGTGGTGCAGGAGAGAAGGAAGTTTGGGAAGATTGGCTGGAACGTGTACTATGACTTCAATGAGTCTGACTTCCAGGTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2910319 232 + 4466143 GTTTTCTTCTCTTCTGAAGGTTGTCACCGAGCCGCCCAATGGGCTGAAACTGAATATGAGGGCAACTTACTTCAAGATCTCTCACGAAATGTTGGACCAGTGCCCGCACCCTGCCTTCAAGCCGCTGGTCTACGTGCTGGCGTTCTTCCATGCTGTGGTGCAGGAGAGAAGGAAGTTTGGGAAGATTGGCTGGAACGTGTACTATGACTTCAATGAGTCTGACTTCCAGGTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1612932 232 + 5364348 GTTTTCTTCTCTTCTGAAGGTTGTCACCGAGCCGCCCAATGGGCTGAAACTCAACATGAGGGCAACTTACTTCAAGATCTCTCACGAAATGCTGGACCAGTGCCCGCACCCTGCCTTCAAGCCGCTGGTCTACGTGCTGGCATTCTTCCATGCTGTGGTGCAGGAGAGAAGGAAGTTTGGGAAGATTGGCTGGAACGTGTACTATGACTTCAATGAGTCTGACTTCCAGGTG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9495741 232 - 31815103 GTTTTCTTCTCCTCTGAAGGTTGTCACGGAGCCGCCCAACGGGCTGAAGCTGAACATGAGGGCCACGTACTTCAAGATCTCGCACGAGATGCTGGAGCAGTGCCCGCACCCGGCCTTCAAGCCGCTGGTCTACGTGCTGGCGTTCTTCCACGCCGTGGTGCTGGAGCGCAGGAAGTTCGGCAAGATCGGCTGGAACGTGTACTACGACTTCAACGAGTCCGACTTCCAGGTG i micMur3.chr21 I 631 I 128 s proCoq1.NW_012154285v1 6749186 232 - 9870158 GTTTTCTTCCCTTCCGCAGGTTGTCACGGAGCCGCCCAACGGGCTGAAACTGAACATGAGGGCCACTTACTTCAAGATCTCCCACGACACGCTGCAGCAGTGCCCACACCCGGCCTTCAAGCCGCTGGTCTACGTGCTGGCGTTCTTCCACGCGGTGGTGCTGGAGCGCAGGAAGTTCGGGAAGATCGGCTGGAACGTGTACTACGACTTCAACGAGTCCGACTTCCAGGTG i proCoq1.NW_012154285v1 I 468 I 155 s otoGar3.GL873618 4334898 232 + 7922563 CTTTTTTTCTCTTCTGAAGGTTGTCACGGAGCCGCCCAATGGGCTGAAACTGAACTTGAGGGCGACCTACTTTAAGATCTCTCATGAGATGCTGGAGCAGTGCCCACACCCTGCCTACAAGCCCTTGATCTATGTGCTGGCGTTCTTCCACGCTGTGGTGCAGGAGCGCAGGAAGTTCGGGAAGATTGGCTGGAATGTGTATTACGACTTCAATGAGTCTGACTTCCAGGTG i otoGar3.GL873618 I 5 C 0 s mm10.chr5 124828415 232 + 151834684 GTCTTCCGCCCTCCTGCAGGTGGTCACAGAGCCACCTAACGGGCTCAAACTGAACATGAGAGCAACCTATTTCAAGATTTCCAATGACATGCTGGAGCAGTGTCCGCATACCGCCTTCAAGCCCCTGGTCTACGTGTTGGCCTTCTTCCACGCTGTGGTCCAGGAGAGGAGGAAGTTTGGCAAGATCGGCTGGAACGTGTACTATGACTTCAATGAGTCTGACTTCCAGGTG i mm10.chr5 C 0 I 3 s canFam3.chr26 33183026 225 - 38964690 GTCTTCTG-------GCAGGTTGTTATGGAGCCACCCAACGGGCTGAAACTCAACATGAGAGCAACTTATTTAAAGATCTCTCATGACATGCTGGAGCAGTGTCCGCACCCTGCTTTCAAATCCCTGGTCTACGTGCTGGCATTCTTCCATGCAGTGGTGCAGGAGAGGAGAAAGTTTGGGAAGATCGGGTGGAATGTGTACTATGACTTCAACGAGTCTGACTTCCAGGTG i canFam3.chr26 C 0 I 7 s dasNov3.JH568189 870899 232 - 1116856 GTGTTCCTTTCTCTGGCAGGTTGTCACAGAGCCACCCAATGGACTGAAACTCAACATGAGAGCAACTTACTTCAAAATCGCCCCCGAAGCTCTAGAGCAGTGTCCACACCCTGCTTTCAAGTCCCTGGTCTACGTGTTGGCATTTTTCCATGCTGTGGTGCAGGAAAGAAGGAAGTTTGGAAAGATCGGATGGAATGTGTATTATGACTTCAACGAGTCTGACTTCCAGGTT i dasNov3.JH568189 C 0 C 0 a score=1486605.000000 s hg38.chr12_KI270834v1_alt 103031 168 + 119498 -------ACAGT--GGCTGCTT---C--TCCTTGGAAATGGCTTCCTTAGGCGGCC-CACTTCCTCCCG-ACTT--TCCTCC--GGGTTCAACCACAGCAGGGTTGCACCGTTCCCAGCAGCCTTTTCAGAAAAGTATCAGAATGTGAACAGCTTG--GTGGGTTTCAGTATAAC--TGAGCGTGT-TCTCTT s panTro5.chr12 127388659 168 + 137163284 -------ACAGC--GGCTGCTT---C--TCCTTGGAAATGGCTTCCTTAGGCGGCC-CACTTCCTCCCG-ACTT--TCCTCC--GGGTTCAACCACAGCAGGGTTGCACCGTTCCCAGCAGCCTTTTCAGAAAAGTATCAGAATGTGAACAGCTTG--GTGGGTTTCAGTATAAC--TGAGCGTGT-TCTCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125738956 168 + 135337776 -------ACAGC--GGCTGCTT---C--TCCTTGGAAATGGCTTCCTTAGGCGGCC-CACTTCCTCCCG-ACTT--TCCTCC--GGGTTCAACCACAGCAGGGTTGCACCGTTCCCAGCAGCCTTTTCAGAAAAGTATCAGAATGTGAACAGCTTG--GTGGGTTTCAGTATAAC--TGAGCGTGT-TCTCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8252501 168 - 8369578 -------ACAGC--GGCTGCTT---C--TCCTTGGAAATGGCTTCCTTAGGCGGCC-CACTTCCTCCCG-ACTT--TCCTCC--GGGTTCAACCACAGCAGGGTTGCACCGTTCCCAGCAGCCTTTTCAGAAAAGTATCAGAATGTGAACAGCTTG--GTGGGTTTCAGTATAAC--TGAGCGTGT-TCTCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97910596 170 + 106955855 -------ACAGC--GGCTGCTT---C--TCCTTGGAAATGGCTTCCTTAGGCGGCC-CGCTTCCTCCTG-ACTT--TCCTTC--GGGTTCAACCACAGCAGGGTTGCACCATTCCCAGCAGCCTTTTCAGAAAAGTATCAGAATATGAACAGCTTGGTGTGGGTTTCAGTATAAC--TGAGCGTGT-TCTCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124025647 168 + 133663169 -------ACAGT--GGCTGCTT---C--TCCTTGGAAATCGCTTCCTTAGGTGGCT-GCTTCCTCCCCG-ACTT--TCCTCT--GAGTTCAACCACAGCAGGGTTGCGCCGTTCCCAGCAGCCTTTTCAGAAAAGTGTCAGAATGTGAACAGCTTG--GTGGGTTTCATTGTGAC--TGAGTGTGT-TCTCTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128273844 168 + 137757926 -------ACAGT--GGCTGCTT---C--TCCTTGGAAATCGCTTCCTTAGGTGGCT-GCTTCCTCCCCG-ACTT--TCCTCT--GAGTTCAACCACAGCAGGGTTGCGCCGTTCCCAGCAGCCTTTTCAGAAAAGTGTCAGAATGTGAACAGCTTG--GTGGGTTTCATTGTAAC--TGAGTGTGT-TCTCTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10672362 168 - 16319837 -------ACAGT--GGCTGCTT---C--TCCTTGGAAATCGCTTCCTTAGGTGGCT-GCTTCCTCCCCG-ACTT--TCCTCT--GAGTTCAACCACAGCAGGGTTGCGCCGTTCCCAGCAGCCTTTTCAGAAAAGTGTCAGAATGTGAACAGCTTG--GTGGGTTTCATTGTAAC--TGAGTGTGT-TCTCTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12296293 170 + 20526591 -------ACAGT--GGCTGCTT---C--TCCTTGGAAATCGCTTCCTTAGGTGGCT-GCTTCCTCCCCG-ACTTAGTCCTCT--GAGTTCAACCACAGCACGGTTGCGCCGTTCCCAGCAGTCTTTTCAGAAAAGTATCAGAATGTGAACAGCTTG--GTGGGTTTCAGTGTAAC--TGAGCGTGT-TCTCTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119267664 167 + 128539186 -------ACAGC--GGCCGCTT---C--TCCTTGG-AATCGCTTCCTTAGGCGGCT-GCTTCCTCCCGG-ACTT--TCCTCT--GAGTTCAACCACAGCAGGGTTGCGCCGTTCCCAGCAGTCTTTTCAGAAAAGTATCAGAATGTGAACAGCTTG--GTGGGTTTCAGTGTAAC--TGAGTGTGT-TCTCTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 619212 168 + 6255621 -------ACAGT--GGCTGCTT---C--TCCTTGGAAATCGCTTCCTTAGGTGGCT-GCTTCCTCCCCG-ACTT--TCCTCT--GAGTTCAACCACAGCAGGGTTGCGCCGTTCCCAGCAGCCTTTTCAGAAAAGTATCAGAATGTGAACAGCTTG--GTGGGTTTCAGTGTAAC--TGAGCGTGT-TCTCTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4645543 168 - 8658521 -------ACAGC--GGCTGCTT---C--TCCTTGGAAATGGCTTCCTTAGGCGGCT-GCTTCCTCCCCG-ACTT--TCCTCT--GAATTCAACCACAGCAGGGTTGCGCCGTTCCCAGCAGCCTTTTCAGAAAAGTATCAGAATGTGAACAGCTCG--GTGGGTTTCACTGTAAC--TGAGTGTGT-TCTCTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114849356 164 + 124281992 -------ACGGC---GCTGCTT---C--TCCTTGGAAACGGCTCCCTTAGGCGGCC-GCTGCCTCCCTG-ACTT--CCCTCC---AGTTCAGCCGCAGCAGGGTTGCGCCG-TCCCAGCTGTCTTTTCAGAAAAGTATCAGAATGTGAACAGCTTG--GTGGGTTTCAGTATAA---TGAGCGTGT-TCTCTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 491396 154 - 9212255 -------ACAGC---GCTGCCT---C--TCCTTGGAAACAGCGTCCTTAGGCGGCCGGCCGCCTCCCTG-ACTT--TCCTCC---AGTTCAGCCACAGCACGGTTGTGCCA-TCCCAGCTGCC-----------GTATCAGAACGTGAACAGCTTG--GTGGGTTTCAGTATAA---TGAGCGTGT-TCTCTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2910551 139 + 4466143 -------ACGGC---GCTGCCT---C--TCCTTGGAAACAGCTTCCTTAGGCGGCCGGCCGCCTCCCTG-ACTT--TCCTCC---AGTTCAGCCACAGCAGGGT---------------TGCC-----------TTTTCAGAACGTGAACAGCTTG--GT-GGTTTCAGTATAA---TGAGCGTGT-TTTCTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1613164 156 + 5364348 -------ACGGC---GCTGCTT---C--TCCTTGGAAACAGCTTCCTTAGGCGGCCCGCTGCCGCC--G-ACTT--TCCTCC---AGTTCAGCCACAGCAGGGTTGTGCCG-TCCCAGCTGCCTTTTCAGAAAAGTATCAGAATGTGAACAC---------GGTTTCCGTATAA---TGAGCGTGT-TCTCTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4335130 149 + 7922563 -------AGAGCTTGGCTGTCT---CGTCCCTAGGAAGATATTTCCCTAGTGGGCT-GTCTGCGCCCTGCCCTT--TCCTCC--AAGTCTGACAGTGGCAGAGTTTTGCCTGCCC-----ACCTTTTCAGTAAA----TAGGATGTGAATGATTTA-----------------AC--TAGGCCTGC-TTTTCT i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124828650 115 + 151834684 -------ATGGC--GATTGTCC---A--GCC------AGTGCACCCCGAGCTGGCT-GGCTTCTGT--A-CCTG--CCTTCT--GAGTCCACCACCACCAAGGT---------------------------------TCAGGCTGTGGATGGCTGT---------------TAACCATAGGCGT-T-TCTCCT i mm10.chr5 I 3 C 0 s canFam3.chr26 33183258 155 - 38964690 -------GTGGT--TGCTGCTC---C--TCCTGAGGAACTTCCTCCTCAGCCAGCTTGTCTCATCCCCA-CCCT--TTCTGC--------AGCTAGGACAG-------CTGCTCCTGCCTGCA-CTTCGGGAGAGGGGCACAGCTTGAGCGACTTG--GTGGGTTGGACAAAAAC--CGAGCCTGT-CCCTCC i canFam3.chr26 I 7 I 1 s dasNov3.JH568189 871131 177 - 1116856 AAAACACATTGC--TGCTACTTGGCC--CTCTTGGGAAACTCTTCCTTATTAGGCCTGTTCCGTACCTG-ACCT--TTCTCCCAGGATTCTGTGAGAGCAGAGTTCT-----TGCTGTCTGCATTTTCAGAAAAGAGTTAGAATGTGAATGACTGT--GTAGGTCTCAGCATAAC--CACGCCCATGCCTCCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9495973 128 - 31815103 I e proCoq1.NW_012154285v1 6749418 155 - 9870158 I a score=87166.000000 s hg38.chr12_KI270834v1_alt 103199 6 + 119498 CTTTCA s panTro5.chr12 127388827 6 + 137163284 CTTTCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125739124 6 + 135337776 CTTTCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8252669 6 - 8369578 CTTTCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97910766 6 + 106955855 CTTTCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124025815 6 + 133663169 CTTTTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128274012 6 + 137757926 CTTTTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10672530 6 - 16319837 CTTTTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12296463 6 + 20526591 CTTTTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119267831 6 + 128539186 CTTTTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 619380 6 + 6255621 CTTTTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4645711 6 - 8658521 CTTTTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114849520 6 + 124281992 CTTTTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 491550 6 - 9212255 CTTTGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2910690 6 + 4466143 CTTTTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1613320 6 + 5364348 CTTTTA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6749573 6 - 9870158 CTTCCA i proCoq1.NW_012154285v1 I 155 C 0 s otoGar3.GL873618 4335280 6 + 7922563 CTTTCA i otoGar3.GL873618 I 1 C 0 s mm10.chr5 124828765 5 + 151834684 -CCCTA i mm10.chr5 C 0 C 0 s canFam3.chr26 33183414 6 - 38964690 CTCTTA i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 871308 6 - 1116856 CTTTTA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9495973 128 - 31815103 I a score=2055642.000000 s hg38.chr12_KI270834v1_alt 103205 103 + 119498 AGGTCTGCATGGAAATTCTGAACACGTACTTAACGAAAGCCTTCCAGCAACGGGACCCAAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAGG- s panTro5.chr12 127388833 103 + 137163284 AGGTCTGCATGGAAATTCTGAACACATACTTAACGAAAGCCTTCCAGCAACGGGACCCAAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAGG- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125739130 103 + 135337776 AGGTCTGCATGGAAATTCTGAACACATACTTAACGAAAGCCTTCCAGCAACGGGACCCAAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAGG- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8252675 103 - 8369578 AGGTCTGCATGGAAATTCTGAACACGTACTTAACGAAAGCCTTCCAGCAACGGGACCCAAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAGG- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97910772 103 + 106955855 AGGTCTGCATGGAAATTCTGAACACGTACTTAACGAAAGCCTTCCAGCAACGGGACCCGAGGATCCCGTGGGGCAGCCTCAAGTACCTAATCGGAGAGGTAGG- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124025821 103 + 133663169 AGGTCTGCATGGAAATTCTGAACACGTACTTAACGAAAGCCTTCCAGCAACGGGACCCGAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAGG- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128274018 103 + 137757926 AGGTCTGCATGGAAATTCTGAACACGTACTTAACGAAAGCCTTCCAGCAACAGGACCCGAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAGG- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10672536 103 - 16319837 AGGTCTGCATGGAAATTCTGAACACGTACTTAACGAAAGCCTTCCAGCAACGGGACCCGAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAGG- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12296469 103 + 20526591 AGGTCTGCATGGAAATTCTGAACACGTACTTAACGAAAGCCTTCCAGCAACGGGACCCGAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAGG- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119267837 103 + 128539186 AGGTCTGCATGGAAATTCTGAACACGTACTTAACGAAAGCCTTCCAGCAACGGGACCCGAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAGG- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 619386 103 + 6255621 AGGTCTGCATGGAAATTCTGAACACGTACTTAACGAAAGCCTTCCAGCAACGGGACCCGAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAGG- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4645717 103 - 8658521 AGGTCTGCATGGAAATTCTGAACACATACTTAACGAAAGCCTTCCAGCAACGGGACCCGAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAGG- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114849526 103 + 124281992 AGGTCTGCATGGAAATTCTGAACACATACTTAACGAAAGCTTTTCAGCAACGGGACCCGAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAAG- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 491556 103 - 9212255 AGGTCTGCATGGAAATTCTGAACACGTACTTAACGAAAGCCTTTCAGCAACGGGACCCGAAGATCCCATGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAGG- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2910696 103 + 4466143 AGGTCTGCATGGAAATTCTGAACACGTACTTAACGAAAGCCTTTCAGCAACGGGACCCGAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAGG- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1613326 103 + 5364348 AGGTCTGCATGGAAATTCTGAACACGTACTTAACGAAAGCCTTTCTGCAACGGGACCCGAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAGG- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9496101 103 - 31815103 AGGTCTGCATGGAGATTCTGAACACGTACCTCACGAAAGCCTTCCAGCAGCACGACCCCAGGATCCCGTGGGGCAGCCTCAAGTACCTCATTGGCGAGGTAGG- i micMur3.chr21 I 128 C 0 s proCoq1.NW_012154285v1 6749579 103 - 9870158 AGGTCTGCATGGAAATTCTGAACACGTACCTAACGAAAGCCTTCCAGCAGCGCGACCCCAGGATCCCGTGGGGCAGCCTCAAGTACCTCATTGGAGAGGTAGG- i proCoq1.NW_012154285v1 C 0 I 260 s otoGar3.GL873618 4335286 103 + 7922563 AGGTCTGCATGGAAATTCTGAACACATACTTAACTAAGGCCTTCCAGCAGCATGACCCAAGGATCCCGTGGGGTAGCCTCAAGTACCTAATTGGAGAGGTAGG- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124828770 103 + 151834684 AGGTCTGTATGGAAATCCTAAACACGTACCTAACGAAAGCCTTCCAGCAGCGTGACCCTCGCATCCCCTGGGGCAGCCTCAAGTACCTTATTGGAGAGGTAAT- i mm10.chr5 C 0 C 0 s canFam3.chr26 33183420 103 - 38964690 AGGTCTGCATGGAGATTCTGAACACATACCTAACAAAAGCCTTCCAGCAACATGACCCTAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTAGG- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 871314 104 - 1116856 AGGTCTGCATGGAAATTCTGAATACGTACTTAACAAAAGCCTTCCAGCAAAATGACCCTCGGATCCCATGGGCCAGCCTCAAGTACCTGATTGGAGAGGTACAG i dasNov3.JH568189 C 0 C 0 a score=25691.000000 s hg38.chr12_KI270834v1_alt 103308 2 + 119498 -GG s panTro5.chr12 127388936 2 + 137163284 -GG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125739233 2 + 135337776 -GG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8252778 2 - 8369578 -GG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97910875 2 + 106955855 -GG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124025924 2 + 133663169 -GG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128274121 2 + 137757926 -GG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10672639 2 - 16319837 -GG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12296572 2 + 20526591 -GG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119267940 2 + 128539186 -GG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 619489 2 + 6255621 -GG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4645820 2 - 8658521 -GG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114849629 2 + 124281992 -GG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 491659 2 - 9212255 -GG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2910799 2 + 4466143 -GG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1613429 2 + 5364348 -GG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9496204 2 - 31815103 -GG i micMur3.chr21 C 0 I 588 s otoGar3.GL873618 4335389 2 + 7922563 -AG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124828873 2 + 151834684 -GA i mm10.chr5 C 0 C 0 s canFam3.chr26 33183523 2 - 38964690 -GG i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 871418 2 - 1116856 TG- i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6749682 260 - 9870158 I a score=2969541.000000 s hg38.chr12_KI270834v1_alt 103310 305 + 119498 TGACCGGGGATCCTTCCGCAGG-TGCCT--CTGGGGCT---ACA---GAGCTGTGGCCTCGTGCCCCTATTTT--CCTCTGAGCCCTCAGAACCAGCCT-----CTTCT-GCCCCTGTGTT--C---------------CCCTTGGGTTTCTGTGACAATTCTC-TCTGCTC-T---------CACCTGGTTGTTCTTTGTCCTAAGTGAGCTCTGTTCACATGGAGGTTCCCTG-AGCTGGATCCATGG-CT-GGGGATCCAGGCAAGGCATCCTC---------------------------------------------TAG--------------CCCCTTGCCT----------------------------CAGC--------TGTTGCTGTA---------------------TACAGAG---CTCA--CAGG-----------------AAGC-------AT---------CCCCGGTGGTCTGCA---CACGGCTCAGGCA s panTro5.chr12 127388938 302 + 137163284 TGACCGGGGATCCTTCCGCAGG-TGCCT--CTGGGGCT---ACA---GAGCTGTGGCCTCGTGCCCCTATTTT--C--CTGAGCCCTCAGAACCAGCCT-----CTTCT-GCCCCTGTGTT--C---------------CCCTTGGGTTTCTGTGAC-ATTCTC-TCTGCTC-T---------CACCTGGTTGTTCTTTGTCCTAAGTGAGCTCTGTTCACACGGAGGTTCCCTG-AGCTGGATCCATGG-CT-GGGGATCCAGGCGAGGCATCCTC---------------------------------------------TAG--------------CCCCTTGCCT----------------------------CAGC--------TGTTGCTGTA---------------------TACAGAG---CTCA--CAGG-----------------AAGC-------AT---------CCCCGGTGGTCTGCA---CACGGCTCAGGCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125739235 302 + 135337776 TGACCGGGGATCCTTCCGCAGG-TGCCT--CTGGGGCT---ACA---GAGCTGTGGCCTCGTGCCCCTATTTT--C--CTGAGCCCTCAGAACCAGCCT-----CTTCT-GCCCCTGTGTT--C---------------CCCTTGGGTTTCTGTGAC-ATTCTC-TCTGCTC-T---------CACCTGGTTGTTCTTTGTCCTAAGTGAGCTCTGTTCACACGGAGGTTCCCTG-AGCTGGATCCATGG-CT-GGGGATCCAGGCGAGGCATCCTC---------------------------------------------TAG--------------CCCCTTGCCT----------------------------CAGC--------TGTTGCTGTA---------------------TACAGAG---CTCA--CAGG-----------------AAGC-------AT---------CCCCGGTGGTCTGCA---CACGGCTCAGGCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8252780 304 - 8369578 TGACCGGGGATCCTTCCACAGG-TGCCT--CTGGGGCT---ACA---GAGCTGTGGCCTCGTGCCCCTATTTT--CCTCTGAGCCCTCAGAACCAGCCT-----CTTCT-GCCCCTGTGTT--C---------------CCCTTGGGTTTCTGTGAC-ATTCTG-TCTGCTC-T---------CACCTGGTTGTTCTTTGTCCTAAGTCAGCTCTGTTCACACGGAGGTTCCCTG-AGCTGGATCCATGG-CT-GGGGATCCAGGCGAGGCGTCCTC---------------------------------------------TAG--------------CCCCTTGCCT----------------------------CAGC--------TGTTGCTGTA---------------------TACAGAG---CTCA--CAGG-----------------AAGC-------GT---------CCCCGGTGGTCTGCA---CATGGCTCAGGCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97910877 295 + 106955855 TGACCGGGGATCCTTCCGCAGG-TGCCT--CTGGGGCT---ACA---TAGCTGTGGCCTCGTGCCCCGATTTT--CCCCTGAACCCTCAGAACCAGCCT-----CTTCT-GC-----------T---------------CCCTTGGGTTTCTGTGAC-ATTCTC-TCTGCTC-T---------CACCTGGTTGTTCTTTGTCCTAAGTGAGTTCTGTTCACATGGAGGTTCCCTG-AGCTGGATCCATGG-CT-GGGGATCCAGGCTAGGCATCCTC---------------------------------------------TAG--------------CCCCTTGCCT----------------------------CAGC--------TGTCACTGTA---------------------TACAGAG---CTCA--CAGG-----------------AAGC-------GT---------CCCCGGTGGTCTGCA---CACGGCTCAGGCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124025926 302 + 133663169 TGACCGGGGATCCTTCTGCAGG-TGCCT--CTAGGGCT---ACA---GAGCTGTGACCTTGTGCCCCTATTTT--CCTCTGAGCCCTCAGAGCCAGCCT-----CTTCT-GCCCC--CGTT--C---------------CCCTTGGGTCCCTGTGAC-ATTCTC-TCTGCTC-T---------CACCCAGTTGTTATTTGTCCTAAGTGAGCTCTATTCACACAGAGGTTCCCTG-AGCTGGATCCATGG-CT-GGGGATCCAGGCTAGGCATCCTC---------------------------------------------CAG--------------CCCCTTGCTT----------------------------CCAC--------TGTCGCTGTG---------------------TACAGAG---CTCA--CAGG-----------------AAGC-------TT---------CCCCGGTGGTCTGCA---CACGGCTCAAGCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128274123 302 + 137757926 TGACCGGGGATCCTTCTGCAGG-TGCCT--CTAGGGCT---ACA---GAGCTGTGACCTTGTGCCCCTATTTT--CCTCTGAGCCCTCAGAGCCAGCCT-----CTTCT-GCCCC--CGTT--C---------------CCCTTGGGTCTCTGTGAC-ATTCTC-TCTGCTC-T---------CACCCAGTTGTTATTTGTCCTAAGTGAGCTCTATTCACACAGAGGTTCCCTG-AGCTGGATCCATGG-CT-GGGGATCCAGGCTAGGCATCCTC---------------------------------------------CAG--------------CCCCTTGCTT----------------------------CCAC--------TGTCGCTGTG---------------------TACAGAG---CTCA--CAGG-----------------AAGC-------TT---------CCCCGGTGGTCTGCA---CACGGCTCAAGCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10672641 302 - 16319837 TGACCGGGGATCCTTCTGCAGG-TGCCT--CTAGGGCT---ACA---GAGCTGTGACCTTGTGCCCCTACTTT--CCTCTGAGCCCTCAGAGCCAGCCT-----CTTCT-GCCCC--TGCT--C---------------CCCTTGGGTCTCTGTGAC-ATTCTC-TCTGCTC-T---------CACCCAGTTGTTATTTGTCCTAAGTGAGCTCTATTCACACAGAGGTTCCCTG-AGCTGGATCCATGG-CT-GGGGATCCAGGCTAGGCATCCTC---------------------------------------------TAG--------------CCCCTTGCTT----------------------------CCAC--------TGTCGCTGGG---------------------TACAGAG---CTCA--CAGG-----------------AAGC-------TT---------CCCCGGTGGTCTGCA---CACGGCTCAAGCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12296574 302 + 20526591 TGACCGGGGATCCTTCTGCAGG-TGCCT--CTAGGGCT---ACA---GAGCTGTAACCTTGTGCCCCTATTTT--CCTCTGAGCCCTCAGAGCCAGCCT-----CTTCT-GCCCC--TGTT--C---------------CCCTTGGGTCTCTGTGAC-ATTCTC-TCTGCTG-T---------CACCCAGTTGTTATTTGTCCTAAGTGAGCTCTATTCACACAGAGGTTCCCTG-AGCTGGATCCATGG-CT-GGGGATCCAGGCTAGGCATCCTC---------------------------------------------TAG--------------CCCCTTGCTT----------------------------CCAC--------TGTCGCTGTG---------------------TACAGAG---CTCA--CAGG-----------------AAGC-------TT---------CCCCAGTGGTCTGCA---CACGGCTCAAGCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119267942 302 + 128539186 TGACTGGGGATCCTTCTGCAGG-TGCCT--CTGGGGCT---TCA---GAGCTGTGGCCTTGTGCCCCTATTTT--CCTCTGAGCCCTCAGAGCCAGCCT-----CTTCT-GCCCC--TGTT--C---------------CCCTTGGGTCTCTGTGAC-ATTCTC-TCTGCTC-T---------CACCCAGTTGTTATTTGTCCCAGGTGAGCTCTATTCACACAGAGGTTCCCTG-AGCTGGATCCATGG-CT-GGGGATCCAGGCTCGGCATCCTC---------------------------------------------TAG--------------CCCCTTGCTT----------------------------CCGC--------TGTCGCTGTG---------------------TACAGAG---CTCA--CAGG-----------------AAGC-------TT---------CCCCGGTGGTCTGCA---CACAGCTCAAGCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 619491 302 + 6255621 TGACCGGGGATCCTTCTGCAGG-TGCCT--CTAGGGCT---ACA---GAGCTGTGACCTTGTGCCCCTATTTT--CCTCTGAGCCCTCAGAGCCAGCCT-----CTTCT-GCCCC--TGTT--C---------------CCCTTGAGTCTCTGTGAC-ATTCTC-TCTGCTC-T---------CACCCAGTTGTTATTTGTCCTAAGTGAGCTCTATTCACACAGAGGTTCCCTG-AGCTGGATCCATGG-CT-GGGGATCCAGGCTAGGCATCCTC---------------------------------------------TAG--------------CCCCTTGCTT----------------------------CCAC--------TGTCGCTGTG---------------------TACAGAG---CTCA--CAGG-----------------AAGC-------TT---------CCCCGGTGGTCTGCA---CACGGCTCAAGCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4645822 300 - 8658521 TGAGTGGGGATCCTTCTGCAGG-TGCCT--CTGGGGCT---ACA---GAGCTGTGGCC-TATGCCCCTATTTT--CCTCTGAGCCCTCAGAGCCAGCCT-----CTTCT-GCCCC--TGTT--C---------------CCCTTGGGTCTCTGTGAC-ATTCTC-TCTGCTC-T---------CACCCAGTTGTCATTTGTCCTAAGTGAGCTCTGTTCACACAGAGGTTCCCTG-AGCTGGATCCATGG-CT--GGGATCCAGGCTAGGCATCCTC---------------------------------------------TAG--------------CCCCTTGCGT----------------------------CCAC--------TGTCACTGTG---------------------TACAGAG---CTGA--CAGG-----------------AAGC-------TT---------CCCCGGTGGTCTGCA---CACAGCTCGAGCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114849631 298 + 124281992 TGCCTGGGGATCTTTCTGCAGG-TGCTT--CTGGGGCT---ACA---GAGCTGTGGCCTTGTGCCCCTGTTTT--CCTCTGAGCCCTCAGGGCCGGCCT-----CTTCT-GCTCC--TGTT------------------CCCTTGGGTCTCTGTGAC-ATTGTC-CCTGCTC-T---------CACC-GGTTGTTCTTTGTCCTAAGTGAGCTCCGTTCACAC--GGGTTCCCTG-AGCTGGAGCCATGG-CT-GGGGATTCAGGCTAGGCATCCTC---------------------------------------------TAG--------------TCCCTTGCCT----------------------------CACC--------TGGCTCCTTA---------------------GGCTGAG---CTCA--CAGG-----------------AAGC-------TC---------TCCCGGTTGTCTGCA---CGTGGCTCAGGCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 491661 300 - 9212255 TGCCCGGGGATCCTTCTGCAGG-TGCTT--CTGGGGCT---ACA---GAGCTGTGACCTCGTGCCCCTGTTTT--CCTCTGAGCCCTCAGGGCCTGCCT-----CTTCT-GCCCC--TGCT------------------CCCTTGGGTCTCTGTGAT-ATTCTC-CCCGCTC-C---------CATT-GGTGGTTCTTTGTCCTAAGTGAGCTCCGTTCACACAGAGGTTCCCTG-AGCTGGACCCGTGG-CT-GGGGATTCGGGCTAGGTGTCCTC---------------------------------------------TAG--------------CCCCTTGCCT----------------------------CACC--------TGGCTCCATA---------------------GACTGAG---CTCA--CAGG-----------------AACC-------TC---------TCCCGGCTGTCTGCG---TGTGGCTCAGGCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2910801 299 + 4466143 TGCCTGGGGATCCTTCTGCAGG-TGCTT--CTGGGGCT---GCA---GAGCTGTGGCCTCATGCCCCTGTTTT--CCTCTGAGCCCTCAGGGCCAGCCT-----CTTCT-GCCCC--TGCT-------------------CCTTGGGTCTCTGTGAC-ATTCTC-CCCACTC-T---------CACC-GATTGTTCTTTGTCCTAAGTGAGCTCCGTTCACACAGAGGTTCCCTG-AGCTGGATCCATGG-CT-GGGGATTCAGGCCAGGCGTCCTC---------------------------------------------TAG--------------ACCCTTGCCT----------------------------CACC--------TGGCTCCGTA---------------------GGCTGAG---CTCA--CAGG-----------------AAGC-------TC---------TCCCGGTTGTCTGCA---TGTGGCTCAGGCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1613431 298 + 5364348 TGCCCGGGGCTCC-TCTGCAGG-TGCTT--CTGGGGCT---ACA---GAGCTGTGGCCTCGTGCCCCCGTTTT--CCTCCGAGCCCTCAGGGCCAGCCT-----CTTCC-GC-CC--TGTT------------------CCCTTGGGTCTCTGTGCC-ATTCTC-CCCGCTC-T---------CACC-GGTTGTTCTTTGCCCTAAGTGAGCTCTGTTCACACAGAGGTTCCCTG-AGCTGGATCCATGG-CT-GGGGATTCAGGCTAGGCGTCCGC---------------------------------------------TAG--------------CCCCTTGCCT----------------------------CACC--------TGGCTCCATA---------------------GGCTGAG---CTCA--CAGG-----------------AAGC-------TC---------TCCCGGTTGTGTGCA---CGTGGCTCAGGCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4335391 309 + 7922563 TGCCCAGAGA-----------------------GGGCTGTGATG---GGGCTGTAGCCTTCTGTCTTGG---T--CCTCTGAGCCCTTTTGCTCTTGCT-----CACCT-TCTGC--TGAAGGC---------------CCCTCAGGTTTCTGTGAA-ATTCTTACCTGGT--------------CCTGGTTGTTCTTTGTCCTAAATGAGTTCCATTCAAACAGAGGTGCCCTA-AGCTGGATTCTTGG-CC-CAAGGCACAGGCCAGGTACCCTT---------------------------------------------AAG--------------GACCCTGCCTAGCCAGGCATGGAAGGCCACTCCGGAGACCAC--------TG-CTTTTTA---------------------AACAGAT---CTCT--CAGGA----------------AAGC-------TT---------TCCTGGTGGTCTGCA---TATGGGTCGGATG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124828875 294 + 151834684 TGGCTGGG---------------TGCCTCACGAGGGCT---GGG---GGTCTGAAACAGAGATACCCA----T--CCTCTGAGCTCTTGGGACAGTCCT---TGCTCCT-GCCCC--CGCC--TACCC----GTTACCACCCTAAGATCACTGAAAA-G------TATGCTT-G---------CCTCCTGTTTTTCTGAGACAAA--------CTATTCCCAGGGAAGTCACTTG-TG-TGAATCTAGGG-CCCCGGGGCCCCTGCTA-GCCTTCTC---------------------------------------------TGG--------------GCAGTT--CC----------------------------CAGC--------TTGC-CAATG---------------------CACTGAG---CACATCCAGG-----------------GAGCCTTAGGGTT---------TTCTTGGGACATGGGTATCATGACTCTTGCA i mm10.chr5 C 0 C 0 s canFam3.chr26 33183526 373 - 38964690 ATCTTGGGGGACCTTTTATGGGCTGCCTC-CCAGGGCT---GGAAGTGGGCTGTGGCCTGGTGCCCTGTGCATGACCTCTGAGCCCTTGGTGACTTCCCTCTTGCTTCT-GCCAC--CTAT--CAGCT----GAAG---GCCCTAGGTCTCTGAGGA-ATTCTA-TTGGCTCAC---------CACCCGGTTGT-CTTTCTTCTAAGCGGGTTCCATCCACATGGAGGTTC--------TAGATTTATCA-CT------CCTGGGTGCTGTGCTCTC---------------------------------------------TAGGGGTCGGCAGTTCCCCACCTGGCT----------------------------ATGCCTTGGGCATGTCGTTGTAATCTTACTCCTGTTCAGTAGGCACGGAGGTCCACA--CTGGGGACCATGACTTTATACAGGC-------CT---------CCCTCATAGCCTGCA---CATGGCTCACACA i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 871420 379 - 1116856 TCTTAGGGGGCCCGTCGGCAAC-TGTCT--CCTGGGTC---GTG------------CCCTTTCCCACG----T--TCTCGGGGCCCTCAGGCTAACTCC-----CCTCTGGCTCC--TGCT--CACTCCAATGGAGGGTCCCTTAGGACTCCGTGA--ACTCTT-CCTGCTC-CTGAGCTCAACACC-CGTCGTTCTTTGTCCTAAGTGAGCTCCCTTCATATGGAGGTCCCCTGCAGCTGGATGCATCGTCC-CGGGACTCCTGCCAGGTGTCCTCGGCGAGGTGGCAGAACCCTGATCAGCCATCCTAGAGGCATGCCAGCAG--------------CTCCTTCCCC-------------------CTCTG----CAGC--------CAGCACAGGGGTTCC----------------CAGGGAG---CTCA--TAGGC----------------AAGC-------TTCCCCCAGGGCCCCAGTGGCCTGCA---CAGTGTTCAAACA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9496206 588 - 31815103 I e proCoq1.NW_012154285v1 6749682 260 - 9870158 I a score=618333.000000 s hg38.chr12_KI270834v1_alt 103615 41 + 119498 -GTGACAT---CAATTCCAAAGACAG-----------------------------AAG------CAGCTGCTGGCTTCTT s panTro5.chr12 127389240 41 + 137163284 -GTGACAT---CAATTCCAAAGACAG-----------------------------AAG------CAGCTGCTGGCTTCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125739537 41 + 135337776 -GTGACAT---CAATTCCAAAGACAG-----------------------------AAG------CAGCTGCTGGCTTCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253084 41 - 8369578 -GTGACAT---CAATTCCAAAGACAG-----------------------------AAG------CAGCTGCTGGCTTCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97911172 41 + 106955855 -GTGACAT---CAATTCCAAAGACAG-----------------------------AAG------CAGCTGCTGGCTTCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124026228 41 + 133663169 -GTGACAT---CAATTCCAAAGACAG-----------------------------CAG------CAGCTGCTGGCTTCTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128274425 41 + 137757926 -GTGACAT---CAATTCCAAAGACAG-----------------------------CAG------CAGCTGCTGGCTTCTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10672943 41 - 16319837 -GTGACAT---CAATTCCAAAGACAG-----------------------------AAG------CAGCTGCTGGCTTCTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12296876 41 + 20526591 -GTGACAT---CAATTCCAAAGACAG-----------------------------AAG------CAGCTGCTGGCTTCTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119268244 41 + 128539186 -GTGACAT---CAATTCCAAAGACAG-----------------------------AAG------CAGCTGCTGGCTTCTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 619793 41 + 6255621 -GTGACAT---CAATTCCAAAGACAG-----------------------------AAG------CAGCTGCTGGCTTCTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646122 41 - 8658521 -GTGACAT---CAATTCCAAAGACAG-----------------------------AAG------CAGCTGCTGGCTTCTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114849929 41 + 124281992 -GTGACAT---CAATTCCAAAGACAG-----------------------------AAG------CAGCTGCTGGCTTCTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 491961 41 - 9212255 -GTGACAT---CAGTTCCAAAGACAG-----------------------------AAG------CAGCTGCTGGCTTCTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911100 41 + 4466143 -GTGACAT---CAATTCCAAAGACAG-----------------------------AAG------CAGCTGCTGGCTTCTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1613729 41 + 5364348 -GTGACAT---CAGTTCCGAAGACAG-----------------------------AAG------CAGCTGCTGGCTTCTT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6749942 41 - 9870158 -GTGACAT---CAATTCCAAAGACAA-----------------------------AAG------TGGCTGCAGGCTTCTT i proCoq1.NW_012154285v1 I 260 I 271 s otoGar3.GL873618 4335700 41 + 7922563 -ATGACGT---CAATTCCAAAGACAA-----------------------------AAG------TGGCTGCTGTTTTTTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124829169 69 + 151834684 -----------GAACTCCTAGGAAAGTTTCTAGACTGGGGAGTTCTGCAACATATAAGGACTGACAACTGGTATCTTGTT i mm10.chr5 C 0 I 26 s canFam3.chr26 33183899 44 - 38964690 -GGGACATCACCAATTCCAAAGACCA-----------------------------AAG------TGGCGACTGGCTTCTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 871799 45 - 1116856 ATTGACATCACCATTTCCAGAGACAA-----------------------------AAG------AAGCTGCTGGCTTCTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9496206 588 - 31815103 I a score=2263535.000000 s hg38.chr12_KI270834v1_alt 103656 228 + 119498 -------------CAGCTGT-------------T--------TGTTTG-A--TGTGTTTGGG---------------GGACTTTGCCTGC-TGCACAGGAGCTCCCAACACTTCCTGAGGGCTTCTTACTGCTTTGGGCCCTATCCCTTGGGAAGCCAGCAAAGCCACAGATCAATTGTGTGAACAG-------------------TGGCCCGAAAGGTTATGCAAGTCAACA-GGTTCAAGCCTTGCAGCAGCCAGGCT-GCTGGAGTC----------TCTTGACCCTGGGTGAGCCTCTGGCCCCGGGC----- s panTro5.chr12 127389281 228 + 137163284 -------------CAGCTGT-------------T--------TGTTTG-A--TGTGTTTGGC---------------GGACTTTGCCTGC-TGCACAGGAGCTCCCAACACTTCCTGAGGGTTTCTTACTGCTTTGGGCCCTATCCCTTGGGAAGCCAGCAAAGCCACAGATCAATTGTGTGAACAG-------------------TGGCCCGAAAGGTTATGCAAGTCAACA-GGTTCGAGCCTTGCAGCAGCCAGGCT-GCTGGAGTC----------TCTTGACCCTGGGCGAGCCTCTGGCCCCGGGC----- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125739578 228 + 135337776 -------------CAGCTGT-------------T--------TGTTTG-A--TGTGTTTGGC---------------GGACTTTGCCTGC-TGCACAGGAGCTCCCAATACTTCCTGAGGGTTTCTTACTGCTTTGGGCCCTATCCCTTGGGAAGCCAGCAAAGCCACAGATCAATTGTGTGAACAG-------------------TGGCCCGAAAGGTTATGCAAGTCAACA-GGTTCGAGCCTTGCAGCAGCCAGGCT-GCTGGAGTC----------TCTTGACCCTGGGCGAGCCTCTGGCCCCGGGC----- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253125 228 - 8369578 -------------CAGCTGT-------------T--------TGTTTG-A--TGTGTTTGGG---------------GGACTTTGCCTGC-TGCACAGGAGCTCCCAACACTTCCTGAGGGCTTCTTACTGCTTTGGGCCCTATCCCTTGGGAAGCCAGCAAAGCCACAGATCAATTGTGTGAACAG-------------------TGGCCCGAAAGGTTATGCAAGTCAACA-GGTTCGAGCCTTGCAGCAGCCAGGCT-GCTGGAGTC----------TCTTGACCCTGGGCGAGCCTCTGGCCCTGGGC----- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97911213 227 + 106955855 -------------CAGCTGT-------------T--------TGTTTG-A--TGTGTTTGG----------------GGTCTTTGCCTGC-TGCACAGGAGCTCCCAACACTTCCTGAGGGCTTCTTATTGCTTTGGGTCCTATCCCTTGGGAAGCCAGCAAAGCCACAGATCAATTGTGTGAACAG-------------------TGGCCCGAAAGGTTATGCAAGTCAACA-GGTTCGAGCCTTGCAGCAGCCAGGCT-GCTGGAGTC----------TCTTGACCCTGAGCGAGCCTCTGGCCCCGGTC----- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124026269 228 + 133663169 -------------TGGCTGT-------------T--------TGTTTG-A--TGTGTTTGGG---------------GGACTTTACTTGC-TGCACAGGAGCTACCAACACTTCCCGAGGGCTTCTTATTGCTTTGGGCCCTATCCCTTGGGAAGCCAGCAAAGCCCCAGATCAATTGTGTGAACAG-------------------TGGCCCAAAAGGCTATGCAAGTCAACA-GGTTCGAGCCTTGCAGCAGCCAGGCT-GTAGGCGTC----------TCTTGACTCTGGGCGCGCCTCTGGCCCCGGGC----- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128274466 228 + 137757926 -------------TGGCTGT-------------T--------TGTTTG-A--TGTGTTTGGG---------------GGACTTTACTTGC-TGCACAGGGGCTACCAACACTTCCCGAGGGCTTCTTATTGCTTTGGGCCCTATCCCTTGGGAAGCCAGCAAAGCCCCAGATCAATTGTGTGAACAG-------------------TGGCCCAAAAGGCTATGCAAGTCAACA-GGTTCGAGCCTTGCAGCAGCCAGGCT-GTAGGCGTC----------TCTTGACCCTGGGCGCGCCTCTGGCCCCGGGC----- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10672984 228 - 16319837 -------------TGGCTGT-------------T--------TGTTTG-A--TGTGTTTGGG---------------GGACTTTACTTGC-TGCACAGGGGCTACCAACACTTCCCGAGGGCTTCTTATTGCTTTGGGCCCTATCCCTTGGGAAGCCAGCAAAGCCCCAGATCAATTGTGTGAACAG-------------------TGGCCCAAAAGGCTATGCAAGTCAACA-GGTTCGAGCCTTGCAGCAGCCAGGCT-GTAGGCGTC----------TCTTGACCCTGGGCGCGCCTCTGGCCCCGGGC----- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12296917 228 + 20526591 -------------TGGCTGT-------------T--------TGTTTG-A--TGTGTTTGGG---------------GGACTTTACTTGC-TGCACAGGGGCTACCAGCACTTCCTGAGGGCTTCTTATTGCTTTGGGCCCTATCCCTTGGGAAGCCAGCAAAGCCACAGATCAATTGTGTGAACAG-------------------TGGCCCAAAAGGCTATGCAAGTCGACA-GGTCCGAGCCTTGCAGGAGCCAGGCT-GTCGGCGTC----------TCTTGACCCTGGGCGCGCCTCTGGCCCCGGGC----- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119268285 228 + 128539186 -------------TGGCTGT-------------T--------TGTTTG-A--TGTGTTTGGG---------------GGACTTTACTTGC-TGCACAGGGGCTACCAACACTTCCTGAGGGCTGCTTATTGCTTTGGGCCCTATCCCTTGGGAAGCCAGCAAAGCCACAGATCAATTGTGTGAACAG-------------------TGGCCCAAAAGGCTATGCAAGTCAACA-GGTTCGAGCCTTGCAGCAGCCAGGCT-GTAGGAGTC----------TCTTGACCCTGGGCGCGCCTCTGGCCCCGAGC----- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 619834 228 + 6255621 -------------TGGCTGT-------------T--------TGTTTG-A--TGTGTTTGGG---------------GGACTTTACTTGC-TGCACAGAGGCTACCAACACTTCCTGAGGGCTTCTTATTGCTTTGGGCCCTATCCCTTGGGAAGCCAGCAAAGCCACAGATCAATTGTGTGAACAG-------------------TGGCCCAAAAGGCTATGCAAGTCAACA-GGTTCGAGCCTTGCAGCAGCCAGGCT-GTAGGCGTC----------TCTTGACCCTGGGCGCGCCTCTGGCCCCGGGC----- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646163 228 - 8658521 -------------TGGCTGT-------------T--------TGTTTG-A--TGTGTTTGGG---------------GGACTTTACTTGC-TGCACAGGGGCTACCAACACTTTCTGAGGGCTTCTTATTGCGTTGGGCCCTATCCCTTGGGAAGCCAGCAAAGCCACAGATCAATTGTGTGAACAG-------------------TGGCCCAAAAGGTTATGCAAGTCAACA-GGTTCGAGCCTTGCAGCAGCCAGGTT-ATAGGAGTC----------TCTTGACCCTGGGTGCGCCTCTGGCCGCGGGC----- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114849970 227 + 124281992 -------------CGGCTGT-------------T--------TGTTCA-A--TGTGTTTTGG---------------GGACTGTGTCTGC-GGCACAGGGGCTCCCAGCACTTCATGAGGGCTGCCTCCTGCTTTGGGCCCTGTCCCTTGGGAAACTGTCAAAGCCA-AGAACACTTGTGTGAACAG-------------------TGGCCCCACAGATTATGCAAGTTAACA-GGTTCTGGCCTTCCAGCAGCCAGGTC-GCAGGAGTC----------TCTTGACCCTGGGCGAGTCTCTGGCCCCAGGC----- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492002 227 - 9212255 -------------TGGC-GT-------------T--------TGTTTG-A--TGTGTTTTGG---------------GGACTGTGCCTGC-AGCACAGGGGTTCCCAGCACTTCATGAGGGCTGCCTCCTGCTTTGGGCCCTGTCCCTTGGGAAGCCAGCAAAGCCACAGAACACTCGTGTGAACAG-------------------TGGCCCCACAGATTATGCCGGTCCACG-GGTTCGGGCCTTCCAGCAGCCAGGCC-GCAGGAGCC----------TCTTGACCCTGGGCAAGTCTCTGGCCCCGGGT----- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911141 212 + 4466143 -------------CGGCTGT-------------T--------TGTTCG-A--TGTGTTTTGG---------------GGACTGTGCCTGC-GGCACAGGGGCTCCCAGCACTCCATGAGGGCTGCCTCCTGCTTTGGGCCCTGTCCCTTGGGAAGCCAGCAAAGCCACAGAACACTTGTGTGAACAG-------------------TGGCCCCACAAATGATGCAGGTCCACA-GGTT----------------CAGGCC-GCAGGAGCC----------TCTTGACCTTGGGCGAGTCTCTGGCCCTGGGC----- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1613770 209 + 5364348 -------------CGGCTGT-------------T--------TGTTCG-A--TGTGTTCTGG---------------GGACTGTGCCTGT-GGCACAGGGGCTCCCAGCGCTTCATGAGGGCTGCCTCCTGCTTTGGGCCCTGTCCCTTGCGAAGCCAGCAAAGCCACAGAAGCCTTGTGTGAACAG-------------------TGGCCCCACAGACCATGCAAGTCAGCA-GGGTCGGGCCTTCCAGCAGCCAGGCC-GCAGG-----------------------------AGTCTGTGGCCCCGGAC----- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4335741 262 + 7922563 -------------GGGTTGTTTTGGTGTTTTGGT--------TGTTTT-G--TATGTGTTGG---------------AGACTTTCCTCAT-GGCCTGCTGGCCTCTGGTACTTTGTCAAGGCTGCTTATCACCTTGAGCTCCATCCCTTGGAAAACCAACAAAGCCACAGTATGATT-TATAAACAAGTCCTCTTGCACG---CATTGGCCCCAAAGTTTG----AGTCAACA-GGTTTGAGCTGCACAGTGGCAGGACT-GCAAGGAGAATGAATTTGGTCTTGAACCTGGGTGAGCCTCTGGCTCTGGGG----- i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124829264 213 + 151834684 -------------GGGgtgt-------------g--------tgtgtgtg--tgtgtgtgtg---------------tgtgtgtgtgtgtgtgtgcgtgtgtttgtgtgGCTTT----GGGCTGTTTCATGCTTTG-GTTCTGTTCTCAGGGAGTCT---CAGACCACAGCATGATTCTATAGACAA-ACCCATTGCTTGTCTCTCTGGCCCAAAAGGTTCTTTGAGTGGACA-GATTGGAGCTGGGCGGTGGTGGGG---GCTGGAGCT----------------------GTAAGTT------------------ i mm10.chr5 I 26 C 0 s canFam3.chr26 33183943 192 - 38964690 -------------TAGTTGC-------------TCTGTGGCCTGTTTA-C--TGTGTTTGG----------------GTATTTTGCAAAT-GGCATACAGGCTCCCAGCACTTCACGAGGGCTGCATATCACCTGGG----------------------------------CCACCTGTTTACACCA-------------------TGGGTCAAAAGGC-ATGTGA-TCAACATGGTTTGAGCTGCACAGTGGCCAGGCCAGCAAGAGTC----------TC-----CCCGAGGGCACCTCAGGTCTC--------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 871844 274 - 1116856 TGGTTGTTTTGTTTGGCAGC-------------T--------TGCTTG-ACTTGGGGGTGGGGAAGCAGGGAGAGCAGGACTTTGCAAAT-TGCCAACTGGTTCCCAGTGCTTCATGAGGG-TGCTCAACACATTGAGAACAGGCCCTTAGAAAGTCAGCAAAGCCAGAGAT-GATTTTGTAAATAAGGCCTCTTGTCTACAT---TGGGCCAAAGGGTTATATGAATCAACACTGTTTGAGCTGCCCAATGGCCAGGCTGGCAGGAGTC----------TT-----CCCAGGTGTGCACTTGGTCTTGACTTGGGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9496206 588 - 31815103 I e proCoq1.NW_012154285v1 6749983 271 - 9870158 I a score=696713.000000 s hg38.chr12_KI270834v1_alt 103884 54 + 119498 CCCCAGGGTGCACACAGTAGGTTCTGAGCTCCTGGCTGGCTCTCA---GGCCCTCTA-- s panTro5.chr12 127389509 54 + 137163284 CCCCAGGGTGCACACAGTAGGTTCTGAGCTCCTGGCTGGCTCTCA---GGCCCTCTA-- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125739806 54 + 135337776 CCCCAGGGTGCACACAGTAGGTTCTGAGCTCCTGGCTGGCTCTCA---GGCCCTCTA-- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253353 54 - 8369578 CCCCAGGGTGCACACAGTAGGTTCTGAGCTCCTGGCTGGCTCTCA---GGCCCTCTA-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97911440 54 + 106955855 CCCCAGGGTGCACACAGTAGGTTCTGAGCTCCTGGCTAGCTCTCA---GGCCCTCTA-- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124026497 54 + 133663169 CCCCAGGGTGCACACAGTAGGTTCTGAGCTCGTGGCTGGCTCTCA---GGCCCTCTA-- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128274694 54 + 137757926 CCCCAGGGTGCACACAGTAGGTTCTGAGCTCGTGGCTGGCTCTCA---GGCCCTCTA-- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673212 54 - 16319837 CCCCAGGGTGCACACAGTAGGTTCTGAGCTCCTGGCTGGCTCTCA---GGCCCTCTA-- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297145 54 + 20526591 CCCCAGGGTGCACACAGTGGGTTCTGAGCTCCTGGCTGGCTCTCA---GGCCCTCTG-- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119268513 54 + 128539186 TCCCAGGGTGCACACAGTAGGTTCTGAGCCCCTGGCTGGCTCTCA---GGCCCTCTA-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620062 54 + 6255621 CCCCAGGGTGCACACAGTAGGTTCTGAGCTCCTGGCTGGCTCTCA---GGCCCTCTA-- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646391 54 - 8658521 CCCCAGGGTGCACACAGTAGGTTCTGAGCTCCTGGCTGGCTCTCA---GGCCCTCTA-- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850197 54 + 124281992 CCCCAGGATGCGCACAGAAGGTTCTGAGTCCCTGGCCGGCTCTCG---GGCCCTCTA-- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492229 54 - 9212255 CCCCAGGATGCGCACAGTAGGTTCTGAGCCCCTGGCTGGCTCTTG---GGCCCTCTG-- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911353 54 + 4466143 CCCCAGGATGCGCACAGTAGGTTCTGAGCCCCTGGCTGGCTCTTG---GGCCCTCTA-- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1613979 54 + 5364348 CCCCGGGATGCGCACAGTAGGTTCTGAGCCCCTGGCTGGCTCTCG---GGCCCTCTA-- i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6750254 51 - 9870158 CCCCGGGGTGCACACAGGAGGTTCT-GTTCCCTGGCTGGCTCTCA---CCCCTCG---- i proCoq1.NW_012154285v1 I 271 I 1 s otoGar3.GL873618 4336004 52 + 7922563 GCCTGGGTTGCACATAATAGGTTCTGGGTTCCTGGTTGGCTCTTA---CCCCCTC---- i otoGar3.GL873618 I 1 I 2 s mm10.chr5 124829477 40 + 151834684 ------------CACATTGGGTTGTGGGTCC--AGCTGGCGCTCACCCAGTCCT----- i mm10.chr5 C 0 C 0 s canFam3.chr26 33184135 50 - 38964690 ----AGGGTTCCCCTGGCAGGTCTTGGGTTCCTGGCCAGCTCTCA---CTCCCCATA-- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 872118 54 - 1116856 CCTTGCGGTGGACCCCGTGGGCCTCAAGTTCCTGGCCAGCTATCA-----CCATGCGCA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9496206 588 - 31815103 I a score=3942267.000000 s hg38.chr12_KI270834v1_alt 103938 202 + 119498 ATTTCAGGTCATGTATGGAGGACGGGCCATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTCCGGAACAAGGAAGTGGACTACAAAATCCCTGTTGGTGATGAAAAGGAGAAATTTGTTGGTGAGATTTCTCAGACAT-GAAAA s panTro5.chr12 127389563 202 + 137163284 ATTTCAGGTCATGTATGGAGGACGGGCCATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTCCGGAACAAGGAAGTGGACTACAAAATCCCTGTTGGTGATGAAAAGGAGAAATTTGTTGGTGAGATTTCTCAGACAT-GAAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125739860 202 + 135337776 ATTTCAGGTCATGTATGGAGGACGGGCCATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTCCGGAACAAGGAAGTGGACTACAAAATCCCTGTTGGTGATGAAAAGGAGAAATTTGTTGGTGAGATTTCTCAGACAT-GAAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253407 202 - 8369578 ATTTCAGGTCATGTATGGAGGACGGGCCATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTCCGGAACAAGGAAGTGGACTACAAAATCCCTGTTGGTGATGAAAAGGAGAAATTTGTTGGTGAGATTTCTCAGACAT-GAAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97911494 202 + 106955855 ATTTTAGGTCATGTATGGAGGACGGGCCATTGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTCCGGAACAAGAAAGTGGACTACAAAATCCCTGTTGGTGATGAAAAGGAGAAATTTGTTGGTGAGATTTCTCAGACAT-GAAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124026551 202 + 133663169 ATTTCAGGTCATGTATGGAGGACGGGCCATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTCCGGAACAAGGAAGTGGACTACAAAATCCCTGTTGGTGATGAAAAGGAGAAATTTGTTGGTGAGATTTCTCAGACAT-GAAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128274748 202 + 137757926 ATTTCAGGTCATGTATGGAGGACGGGCCATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTCCGGAACAAGGAAGTGGACTACAAAATCCCTGTTGGTGATGAAAAGGAGAAATTTGTTGGTGAGATTTCTCAGACAT-GAAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673266 202 - 16319837 ATTTCAGGTCATGTATGGAGGACGGGCCATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTCTGGAACAAGGAAGTGGACTACAAAATCCCTGTTGGTGATGAAAAGGAGAAATTTGTTGGTGAGATTTCTCAGACAT-GATAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297199 202 + 20526591 ATTTCAGGTCATGTATGGGGGACGGGCCATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTCCGGAACAAGGAAGTGGACTACAAAATCCCTGTTGGTGATGAAAAGGAGAAATTTGTTGGTGAGATTTCTCAGACAT-GAAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119268567 202 + 128539186 ATTTCAGGTCATGTATGGAGGACGGGCCATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTCCGGAACAAGGAAGTGGACTACAAAATCCCTGTTGGTGATGAAAAGGAGAAATTTGTTGGTGAGATTTCTCAGACAT-GAAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620116 202 + 6255621 ATTTCAGGTCATGTATGGAGGACGGGCCATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTCCGGAACAAGGAAGTGGACTACAAAATCCCTGTTGGTGACGAAAAGGAGAAATTTGTTGGTGAGATTTCTCAGACAT-GAAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646445 202 - 8658521 ATTTCAGGTCATGTACGGAGGACGAGCCATCGACAGCTTTGATCGCCGCATCCTGACCATCTATATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTCCGGAACAAGGAAGTGGACTACAAAATCCCTGTTGGTGATGAAAAGGAGAAATTTGTTGGTGAGATTTCTCAGACAT-GAAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850251 203 + 124281992 ATTTCAGGTCATGTATGGAGGCCGGGCTATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCGTTCCACTTCTTCCGGAACAAGGAAGTGGACTATAAAATCCCTGTTGGTGACGGAAAGGAGAAATTTGTTGGTGAGATTTCTCAGACACAAAAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492283 202 - 9212255 ATTTCAGGTCATGTATGGAGGACGGGCTATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGACGAGTACCTGGGGGATTTCATTTTTGATACTTTCCAGCCGTTCCACTTCTTTCGGAACAAGGAGGTGGACTACAAGATCCCTGTTGGTGACGAAAAGGAGAAATTTGTTGGTGAGATTTCTCAGATAC-AAAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911407 202 + 4466143 ATTTCAGGTCATGTATGGAGGACGGGCTATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCGTTCCACTTCTTCCGGAACAAGGAAGTGGACTACAAAATCCCTGCTGGTGACGAAAAGGAGAAATTTGTTGGTGAGATTTCTCAGACAC-AAAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614033 202 + 5364348 ATTTCAGGTCATGTATGGAGGACGAGCTATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCGTTCCACTTCTTCCGGAACAAGGAAGTGGACTACAAAATCCCTGTTGGTGACGAGAAGGAGAAATTTGTTGGTGAGATTTCTCAGACAC-AAAAA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9496794 202 - 31815103 ATTTCAGGTCATGTACGGAGGACGGGCCATCGACAGCTTTGACCGCCGCATCCTGACCATCTACATGGACGAGTACCTGGGAGACTTCATCTTCGATACTTTCCAGCCCTTCCATTTCTTCTGGAACAAGGAAGTGGACTACAAAATCCCTCCTGGTGATGTGAAGGATAAGTTTGTGGGTGAGATTTCTCAGATAT-GAAAA i micMur3.chr21 I 588 I 680 s proCoq1.NW_012154285v1 6750306 202 - 9870158 CTTTCAGGTCATGTACGGAGGACGGGCCATCGACAGCTTTGATCGTCGCATCCTGACCATCTACATGGACGAATACCTGGGAGACTTCATTTTTGATACTTTCCAGCCGTTCCACTTCTTCCGGAACAAGGAAGTGGACTATAAAATCCCTGCTGGTGATGTAAAGGAAAAGTTTGTTGGTGAGATTTCTCAGATAC-GAAAG i proCoq1.NW_012154285v1 I 1 C 0 s otoGar3.GL873618 4336058 201 + 7922563 ATTTCAGGTCATGTATGGAGGGAGGGCCATTGACAGCTTTGATCGCCGTATCCTGACTGTCTACATGGATGAATACCTGGGAGACTTCCTTTTTGATACTTTTCAGCCATTCCACTTCTTTTGTAACAAGGAAGTGGACTATAAAATCCCTGCTGGTGATGTAAAGGAAAAATTTGTTGGTGAGCTTTCTCAAA-AT-GAAAA i otoGar3.GL873618 I 2 I 2 s mm10.chr5 124829517 201 + 151834684 TCTTCAGGTCATGTACGGAGGCCGAGCTATTGACAGCTTCGATCGGCGCATCCTCACCACGTATATGGATGAGTACTTGGGAGACTTCATCTTCGATACTTTTCAACCATTCCACTTCTTCCGGAACAAGGATGTGGACTATAAAATCCCCGTGGGTGACATAAAGGATAAATTTGTCGGTGAGCTGTCCCAGG-GC-GAAGG i mm10.chr5 C 0 C 0 s canFam3.chr26 33184185 200 - 38964690 -ACTTAGGTCATGTATGGAGGACGGGCCATCGACAGCTTTGATCGACGCATCCTGACCATCTACATGGATGAGTACCTGGGAGACTTCATTTTTGACACTTTCCAGCCATTCCACTTCTTCCAGAATAAGGAAGTAGACTATAAAATCCCCACTGGTGATGTAAAGGAAAAATTTGTCGGTGAGATTTCTCAGGCAT-CAAA- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 872172 202 - 1116856 ATTTCAGGTCATGTATGGAGGACGGGCCATTGACAGCTTCGATCGGCGCATTCTGACCATCTACATGGATGAGTACCTGGGAGATTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTTCGGAACAAAGACGTGGACTATAAAATCCCTCCGGGTGATGTCAAGGAAAAATTTGTTGGTGAGATTTCTCAAACAT-CAAAA i dasNov3.JH568189 C 0 C 0 a score=366605.000000 s hg38.chr12_KI270834v1_alt 104140 39 + 119498 GATG----TTTTCAAGGCTTTTTCTAAGGGAG----ACCATACATTT s panTro5.chr12 127389765 39 + 137163284 GATG----TTTTCAAGGCTTTTTCTAAGGGAG----ACCATACATTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740062 39 + 135337776 GATG----TTTTCAAGGCTTTTTCTAAGGGAG----ACCATACATTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253609 39 - 8369578 GATA----TTTTCAAGGCTTTTTCTAAGGGAG----ACCATACATTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97911696 39 + 106955855 TATA----TTTTCAAGGCTTTTTCTAAGGGAG----ACCATACATTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124026753 37 + 133663169 GA------TTTTCAAGGCTTTTGCTAAGGGAG----ACCATACATTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128274950 37 + 137757926 GA------TTTTCAAGGCTTTTGCTAAGGGAG----ACCATACATTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673468 37 - 16319837 GA------TTTTCAAGGCTTTTGCTAAGGGAG----ACCATACATTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297401 37 + 20526591 GA------TTTTCAAGGCTTTTTCTAAGGGAG----ACCATACATTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119268769 37 + 128539186 TA------TTTTCAAGGCTTTTTCTAAGGGAG----ACCATACATTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620318 37 + 6255621 GA------TTTTCAAGGCTTTTTCTAAGGGAG----ACCATACATTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646647 37 - 8658521 GA------TTTTCGAGGCTTTTTCTAAGGGAA----ACCATACATTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850454 39 + 124281992 GTTA----TTTTCAAGGCTTTTTCTAAGGGAT----ACCATGCATTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492485 39 - 9212255 GTTA----TTTTCTAGGCTTTTTCTAAGGGAT----ACCATGCATTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911609 39 + 4466143 GCTA----TTTTCGAGGCTTTTTCTAAGGGAT----ACCGTGCATTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614235 39 + 5364348 GTTA----TTTTCAAGGCTGTTTCTAAGTGAT----ACCATGCATTT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6750508 39 - 9870158 CGTA----TTTTTAAGGCCATTTCTAAGGGAG----ATGATACATTT i proCoq1.NW_012154285v1 C 0 I 60 s otoGar3.GL873618 4336261 30 + 7922563 CATT----TGTTTTCTGTGGTTGCCTTGGTAG----CT--------- i otoGar3.GL873618 I 2 I 4 s mm10.chr5 124829718 26 + 151834684 ------------GAAGGCCTTT-----GAAAG----ATTATAGATTT i mm10.chr5 C 0 I 1 s canFam3.chr26 33184385 43 - 38964690 TATA----TGTTAAAAGTGTTTTCTAAGGGAGATCCACCGTACATTT i canFam3.chr26 C 0 I 35 s dasNov3.JH568189 872374 34 - 1116856 ---GCCATTTTTCAAAGTTCTCT------GGG----ATCATCCGCTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9496996 680 - 31815103 I a score=247260.000000 s hg38.chr12_KI270834v1_alt 104179 27 + 119498 ---------------------------------------CAACCGGCT--------------CCTCTCCTGGTG--GGGGCT s panTro5.chr12 127389804 27 + 137163284 ---------------------------------------CAACCGGCT--------------CCTCTCCTGGTG--GGGGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740101 27 + 135337776 ---------------------------------------CAACCGGCT--------------CCTCTCCTGGTG--GGGGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253648 27 - 8369578 ---------------------------------------CAACTGGCT--------------CCTCTCCTGGTG--GGGGCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97911735 26 + 106955855 ---------------------------------------CAACTGGCT--------------CCTCTCCTGGT---GGGGCG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124026790 26 + 133663169 ---------------------------------------CAACTGGCT--------------CCTCTCCTGGT---GGGGCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128274987 26 + 137757926 ---------------------------------------CAACTGGCT--------------CCTCTCCTGGT---GGGGCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673505 26 - 16319837 ---------------------------------------CAACTGGCT--------------CCTCTCCTGGT---GGGGCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297438 26 + 20526591 ---------------------------------------CAACTGGCT--------------CCTCTCCTGGT---GGGGCG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119268806 26 + 128539186 ---------------------------------------CAACTGGCT--------------CCTCTCCTGGT---GGGGCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620355 26 + 6255621 ---------------------------------------CAACTGGCT--------------CCTCTCCTGGT---GGGGCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646684 26 - 8658521 ---------------------------------------CAACTGGTT--------------CCTCTCCTGGT---GGGGCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850493 27 + 124281992 ---------------------------------------CAGCTGGTT--------------CCTCTCCTGGTA--GGGGCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492524 27 - 9212255 ---------------------------------------CAGCTGGTT--------------CCTCTCCTGGCA--GGGGTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911648 27 + 4466143 ---------------------------------------CAGCTGGTT--------------CCTCTCCTGGTA--CGGGCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614274 27 + 5364348 ---------------------------------------CAGCTGGTT--------------CCTCTCCTGGTA--GGGGCC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4336295 22 + 7922563 ---------------------------------------CAACC------------------CCTGTGCTCCT---GGGGTG i otoGar3.GL873618 I 4 C 0 s mm10.chr5 124829745 43 + 151834684 ---------------------------------------TATCTGCTTCGACTCTTAGCCACCCTCTCCTGCTGATGGGACT i mm10.chr5 I 1 C 0 s canFam3.chr26 33184463 26 - 38964690 ---------------------------------------CTTCTGACC--------------TCTCTGCTGGT---GGGGAT i canFam3.chr26 I 35 C 0 s dasNov3.JH568189 872408 64 - 1116856 CCCCTGCCTTGTTTTCTGTAGCTGGCATGATAGTGCTTCTGACTGACC--------------CCTCTCCTAGT---GGGCT- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9496996 680 - 31815103 I e proCoq1.NW_012154285v1 6750547 60 - 9870158 I a score=434291.000000 s hg38.chr12_KI270834v1_alt 104206 33 + 119498 CCTCGGCTGGTCAGGTGTGGTCTGTTAAGCCTG s panTro5.chr12 127389831 33 + 137163284 CCTCGGCTGGTCAGGTGTGGTCTGTTAAGCCTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740128 33 + 135337776 CCTCGGCTGGTCAGGTGTGGTCTGTTAAGCCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253675 33 - 8369578 CCTCGGCTGGTCAGGTGTGGTCTGTTAAGCCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97911761 33 + 106955855 CCTCGGCTGGTCAGGTGTGGTCTGTTAAGCCTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124026816 33 + 133663169 CCTTGGCTGGTCAGGTGTGGTCTGTTAAGCCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275013 33 + 137757926 CCTTGGCTGGTCAGGTGTGGTCTGTTAAGCCTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673531 33 - 16319837 CCTTGGCTGGTCAGGTGTGGTCTGTTAAGCCTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297464 33 + 20526591 CCTTGGCTGGTCAGGTGTGGTCTGTTAAGCCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119268832 33 + 128539186 CCTTGGCTGGTCAGGTGTGGTCTGTTAAGCCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620381 33 + 6255621 CCTTGGCTGGTCAGGTGTGGTCTGTTAAGCCTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646710 33 - 8658521 CCGTGGCTGGTCAGGTGTGGTCTGTTAAGCCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850520 33 + 124281992 CCTCAGCTGGTCAGGTGTGGTCTGTTCGGCTTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492551 33 - 9212255 CCTCAGCTGGTCAGGTGTGGTCTGTTCGGCCTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911675 33 + 4466143 CCTCAGCTGGTCAGGTGTGGTCTGCTCAGCCTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614301 33 + 5364348 CCTCAGCTGGTCAAGTGTGGTGTGTTCGGCCTG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6750607 33 - 9870158 CCTTGGCTGGCCAGGTGTGGTCTGTTAACCCTG i proCoq1.NW_012154285v1 I 60 I 87 s otoGar3.GL873618 4336317 33 + 7922563 CCTTAGCTGGCCAGGTGTGGTCTGTTAAGCCTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124829788 17 + 151834684 CATAGGCTGGTCAAGTA---------------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33184489 32 - 38964690 CCTTGACCGGT-GGGCCTGCTCTGTTACATTTT i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 872472 21 - 1116856 -CTTGGACG---AGGC--------CTAAGCCCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9496996 680 - 31815103 I a score=937125.000000 s hg38.chr12_KI270834v1_alt 104239 90 + 119498 TTAGGTGGCTCGGCAGACGCTTCCTGGCTGCAGAGCTGACTGATAG----AGTTCAGATTTCCCATCCTGGAATGATGGTAAATAAATCAGGTT s panTro5.chr12 127389864 90 + 137163284 TTAGGTGGCTCGGCAGATGCTTCCTGGCTGCAGAGCTGACTGATAG----AGTTCAGATTTCCCATCCTGGAATGATGGTAAATAAATCAGGTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740161 90 + 135337776 TTAGGTGGCTCGGCAGATGCTTCCTGGCTGCAGAGCTGACTGATAG----AGTTCAGATTTCCCATCCTGGAATGATGGTAAATAAATCAGGTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253708 90 - 8369578 TTAGGTGGCTCAGCAGACGCTTCCTGGCTGCAGAGCTGACTGATAG----AGTTCAGATTTCCCATCCTGGAATGATGGTAAATAAATCAGGTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97911794 86 + 106955855 TTAGGTGTCTCGGCAGACGCTTCCTGGCTGCAGAG----CTGATAG----AGTTCAGATTTCCCATCCTGGAATGATGGTAAATAAATCAGGTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124026849 86 + 133663169 TTAGGTGGCTTGGCAGACAATTCCTGGCTGCAGAG----CTGATAG----AGTTCAGATTTCCCATCCTGCAATGATGGTAAATAAATCAGGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275046 86 + 137757926 TTAGGTGGCTTGGCAGACAATTCCTGGCTGCAGAG----CTGATAG----AGTTCAGATTTCCCATCCTGCAATGATGGTAAATAAATCAGGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673564 86 - 16319837 TTAGGTGGCTTGGCAGACAATTCCTGGCTGCAGAG----CTGATAG----AGTTCAGATTTCCCATCCTGCAATGATGGTAAATAAATCAGGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297497 86 + 20526591 TTAGGTGGCTTGGCAGACAATTCCTGGCTGCAGAG----CCGATAG----AGTTCAGATTTCCCATCCTGCAATGATGGTAAATAAATCAGGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119268865 86 + 128539186 TTAGGTGGCTTGGCAGACAATTCCTGGCTGCAGAG----CTGATAG----AGTTCAGATTTCCCATCCTGCAATGATGGTAAATAAATCAGGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620414 86 + 6255621 TTAGGTGGCTTGGCAGACAATTCCTGGCTGCAGAG----CTGATCG----AGTTCAGATTTCCCATCCTGCAATGATGGTAAATAAATCAGGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646743 86 - 8658521 TTAGGTGGCTTGGCAGACAATTCCTGGCTGCAGAG----CTGATAG----AGTTCAGATTTCCCATCCTGCAATGATGCTAAATAAATCAGGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850553 86 + 124281992 TTAGGTGGGTTGGCAGATGCCTCCTGGCTGCAGAG----CTGATAG----AGTGCAGATTTCCCATCCTGGAATGATGGTCAATAGATCAGGTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492584 86 - 9212255 TTAGGTGGCTTGGCAGATGCCTCCTTGCTGCAGAG----TTGATAG----AGTGCAGATTTCCCATCCTGGAATGATGGTCAATAAATCAGGTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911708 85 + 4466143 TTAGGTGGCTC-GCAGATGCCTCCTGGCTGCAGAG----CTGATAG----AGTGCAGATTTCCCGTCCTGGAATGATGGTCAGTAAATCAGGTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614334 86 + 5364348 ATAGGTGGCTCGGCAGATGCCTCCTGGCTGCAGAG----CTGATAG----AGTGCATATTTCCCATCCTGGAATGATGGTCAATAAATCAGGTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4336350 72 + 7922563 ------------CTAGTTTCCTCCTAGCCTCAGAG----CTGAC------AGTTCAGATTTCCCACCTTGGAACCATGGTAAATATATCCGATT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124829805 41 + 151834684 --AGGCTGTCCCTTGGGCTCTGCCTCACTTCAGAG----CTGCT----------------------CCT------------------------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33184523 89 - 38964690 TTAGGGGGCCCAGCAAGTCCTTTATAGCCTCAGTG----CTGATGGAGTTAGTTCAGATTTCTTGTC-TGGAATGATGACAAATATGTCAGATT i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 872493 84 - 1116856 TTAGGAGGTCCAGCAG------CTTAGTCTTAGCA----CTGATGGAGTTAGCTCATATTTCTCACCATGGAATGATGGAAAATAGGCTAGATT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9496996 680 - 31815103 I e proCoq1.NW_012154285v1 6750640 87 - 9870158 I a score=32279.000000 s hg38.chr12_KI270834v1_alt 104329 2 + 119498 CC s panTro5.chr12 127389954 2 + 137163284 CC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740251 2 + 135337776 CC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253798 2 - 8369578 CC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97911880 2 + 106955855 CC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124026935 2 + 133663169 CC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275132 2 + 137757926 CC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673650 2 - 16319837 CC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297583 2 + 20526591 CC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119268951 2 + 128539186 CC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620500 2 + 6255621 CC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646829 2 - 8658521 CC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850639 2 + 124281992 CC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492670 2 - 9212255 CC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911793 2 + 4466143 CC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614420 2 + 5364348 CC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6750727 2 - 9870158 CC i proCoq1.NW_012154285v1 I 87 C 0 s otoGar3.GL873618 4336422 2 + 7922563 CT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124829846 2 + 151834684 TC i mm10.chr5 C 0 C 0 s canFam3.chr26 33184612 2 - 38964690 CT i canFam3.chr26 C 0 I 5 s dasNov3.JH568189 872577 2 - 1116856 CT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9496996 680 - 31815103 I a score=67502.000000 s hg38.chr12_KI270834v1_alt 104331 5 + 119498 ACCTG s panTro5.chr12 127389956 5 + 137163284 ACCTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740253 5 + 135337776 ACCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253800 5 - 8369578 ACCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97911882 5 + 106955855 ACCTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124026937 5 + 133663169 ACCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275134 5 + 137757926 ACCTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673652 5 - 16319837 ACCTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297585 5 + 20526591 ACCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119268953 5 + 128539186 ACCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620502 5 + 6255621 ACCTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646831 5 - 8658521 ACCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850641 5 + 124281992 ACCTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492672 5 - 9212255 ACCTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911795 5 + 4466143 ACCTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614422 5 + 5364348 ACCTG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6750729 5 - 9870158 ACCCG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4336424 5 + 7922563 GTCTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124829848 5 + 151834684 ACCTG i mm10.chr5 C 0 C 0 s dasNov3.JH568189 872579 2 - 1116856 AT--- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9496996 680 - 31815103 I e canFam3.chr26 33184614 5 - 38964690 I a score=975817.000000 s hg38.chr12_KI270834v1_alt 104336 87 + 119498 GAAGGGCAGAATGGCCACAGTGAAGCTCACTGAGCCATTTTCGTAAAAGATGAACATACGGCTGGAC-T-GGGTGTGGTAGTGTAGA-AT s panTro5.chr12 127389961 87 + 137163284 GAAGGGCAGAATGGCCACAGTGAAGCTCACTGAGCCATTTTCGTAAAAGATGAACATACGGCTGGAC-T-GGGTGTGGTAGTGTAGA-AT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740258 87 + 135337776 GAAGGGCAGAATGGCCACAGTAAAGCTCACTGAGCCATTTTCGTAAAAGATGAACATACGGCTGGAC-T-GGGTGTGGTAGTGTAGA-AT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253805 87 - 8369578 GAAGGGCAGAATGGCCACAGTGAAGCTCACTGAGCCATTTTCGTAAAAGATGAACATACGGCTGGAC-C-GGGTGTGGTAGTGTAGA-AT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97911887 87 + 106955855 GAAAGGCAGAGTGGCCACAGTGAAGCTCACTGAGCCATTTTCATAAAAGATGAACATACGGCTGGAC-T-GGGTGTGGTAGTGTAGA-AT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124026942 87 + 133663169 GAAGGGCAGAGTGGCCACAGTGAAGCTCACTGAGACTTTTTCAGAAAAGATGAATATACGGCTGGAC-T-GGGTGCGGTAGTGTAGA-AT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275139 87 + 137757926 GAAGGGCAGAGTGGCCACAGTGAAGCTCACTGAGACTTTTTCAGAAAAGATGAATATACGGCTGGAC-T-GGGTGCGGTAGTGTAGA-AT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673657 88 - 16319837 GAAGGGCAGAGTGGCCACAGTGAAGCTCACTGAGACTTTTTCAGAAAAGATGAATATACGGCTGGACTT-GGGTGCGGTAGTGTAGA-AT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297590 87 + 20526591 GAAGGGCAGAGTGGCCACAGTGAAGCTCACTGAGACTTTTTTAGAAAAGATGGATATACGGCTGGAC-T-GGGTGCGGTAGTGTAGA-AT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119268958 87 + 128539186 GAAGGGCAGAGTGGCCACAGTGAAGCTCACTGAGACTTTTTCAGAAAAGATGAATATACGGCTGGAC-T-GGGTGTGGTAGTGTAGA-AT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620507 87 + 6255621 GAAGGGCAGAGTGGCCACAGTGAAGCTCACTGAGACTTTTTCAGAAAAGATGGATATACGGCTGGAC-T-GGGTGCGGTAGTGTAGA-AT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646836 87 - 8658521 GAAGGGCAGAGTGGCCACAGTGAAGCTCACTGAGCCGTTTTCACAAAACATGAATAGACAGCTGGAC-T-GGGTGTGGTAGTGTAGA-AT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850646 86 + 124281992 GAAGGGCAGAGTGGCCACGGTGAAGCTCACTGAACCATATTCATAGAAGAAGAACATACGGCTGGAT-T-GGGTGTGG-AGTGTAGA-AT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492677 87 - 9212255 GAAGGGCAGAGTGGCCATGGTAAAGCCCACTGAACCATTTTCATAAAAGATGAACATACAGCTGGAT-T-GGGTGTGGTAGTGTAGA-AT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911800 77 + 4466143 GAAGGGCAGAGCGGCCATGGTGAAGCTCACTGAACCATTTTCATAAAAGAT----------CTGGAT-T-GGGTGTGGTAGTGTAGA-AT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614427 87 + 5364348 GAAGGGCAGAGTGGCCATGGTGAAGCTCACTGAGCCATTTTCATAAAAGATGAACATACGGCTGGAT-T-GGGTGTGATAGTGTCGA-AT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6750734 87 - 9870158 GAAGGGCAGAGTGGCCACTGGGAAGCTCACTGAACCATTTTCATAAACGATAAACATATAGCTGGAC-T-GGGTGTGGTGGTGCAGA-GT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4336429 54 + 7922563 GAAGGGCAGAGTAGCCACTGAG------------CCATTTTCATAAATGATAAACATACAGCTGGA------------------------ i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124829853 78 + 151834684 GAAGGGCAG-GTGGCC-CTGGGAAGCTCACTGTGCCATATGCATGA------CACATATGTGGGGAC---AGGTGAGGTGGAGTAGG-GC i mm10.chr5 C 0 C 0 s canFam3.chr26 33184619 86 - 38964690 GAAGGGCAGAGTGGCC--TAGGAAACTCCCTGAG-CATTTTCATAAATGATTAGTACACAGCTGGAG-TAGGGTATGGTGGtatatatat i canFam3.chr26 I 5 C 0 s dasNov3.JH568189 872581 16 - 1116856 -------------------------------------------------------------------------TGTGGAGGGGTAGA-AT i dasNov3.JH568189 C 0 I 45 e micMur3.chr21 9496996 680 - 31815103 I a score=183718.000000 s hg38.chr12_KI270834v1_alt 104423 15 + 119498 TTTTACA-TTAAAA-AC s panTro5.chr12 127390048 15 + 137163284 TTTTGCA-TTAAAA-AC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740345 15 + 135337776 TTTTGCA-TTAAAA-AC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253892 15 - 8369578 TTTTACA-TTAAAA-AC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97911974 15 + 106955855 TTTTACA-TTAAAA-AC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027029 15 + 133663169 TTTTATA-TTAAAA-AC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275226 15 + 137757926 TTTTATA-TTAAAA-AC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673745 15 - 16319837 TTTTACA-TTAAAA-AC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297677 15 + 20526591 TTTTACA-TTAAAA-AC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269045 15 + 128539186 TTTTACA-TTAAAA-AC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620594 15 + 6255621 TTTTACA-TTAAAA-AC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646923 15 - 8658521 TTTTACA-TTAAAA-AC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850732 15 + 124281992 TTTTACA-TTAAAA-GC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492764 15 - 9212255 TTTTACA-TTAAAA-AC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911877 15 + 4466143 TTTTACA-TTAAAA-AC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614514 15 + 5364348 TTTTACA-TTAAAA-AC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6750821 14 - 9870158 TTTCA-A-TTAAAA-AC i proCoq1.NW_012154285v1 C 0 C 0 s mm10.chr5 124829931 16 + 151834684 CTTTATT-TTAAGACAC i mm10.chr5 C 0 C 0 s canFam3.chr26 33184705 16 - 38964690 ttttttatttaaaa-aC i canFam3.chr26 C 0 C 0 e micMur3.chr21 9496996 680 - 31815103 I e dasNov3.JH568189 872597 45 - 1116856 I e otoGar3.GL873618 4336483 0 + 7922563 C a score=2672.000000 s hg38.chr12_KI270834v1_alt 104438 4 + 119498 ATGT s panTro5.chr12 127390063 4 + 137163284 ATGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740360 4 + 135337776 ATGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253907 4 - 8369578 ATGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97911989 4 + 106955855 ATGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027044 2 + 133663169 --GT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275241 2 + 137757926 --GT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673760 2 - 16319837 --GT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297692 2 + 20526591 --GT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269060 2 + 128539186 --GT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620609 2 + 6255621 --GT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646938 2 - 8658521 --GT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850747 4 + 124281992 AGGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492779 3 - 9212255 ATG- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911892 3 + 4466143 ATG- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614529 4 + 5364348 ATGC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6750835 4 - 9870158 ATGT i proCoq1.NW_012154285v1 C 0 I 93 s mm10.chr5 124829947 2 + 151834684 AT-- i mm10.chr5 C 0 C 0 e micMur3.chr21 9496996 680 - 31815103 I e dasNov3.JH568189 872597 45 - 1116856 I e canFam3.chr26 33184721 0 - 38964690 C e otoGar3.GL873618 4336483 0 + 7922563 C a score=67032.000000 s hg38.chr12_KI270834v1_alt 104442 6 + 119498 CATTgg s panTro5.chr12 127390067 6 + 137163284 CATTgg i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740364 6 + 135337776 CATTgg i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253911 6 - 8369578 CATTgg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97911993 6 + 106955855 CATTgg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027046 6 + 133663169 CATTGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275243 6 + 137757926 CATTGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673762 6 - 16319837 CATTgg i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297694 6 + 20526591 CATTgg i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269062 6 + 128539186 CATTgg i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620611 6 + 6255621 CATTgg i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646940 6 - 8658521 CATTgg i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850751 6 + 124281992 CGTTgg i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492782 6 - 9212255 CATTgg i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911895 6 + 4466143 CATTgg i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614533 6 + 5364348 CATTGT i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124829949 6 + 151834684 CAATAG i mm10.chr5 C 0 I 56 e micMur3.chr21 9496996 680 - 31815103 I e proCoq1.NW_012154285v1 6750839 93 - 9870158 I e dasNov3.JH568189 872597 45 - 1116856 I e canFam3.chr26 33184721 0 - 38964690 C e otoGar3.GL873618 4336483 0 + 7922563 C a score=141478.000000 s hg38.chr12_KI270834v1_alt 104448 14 + 119498 ctggtcatggtggc s panTro5.chr12 127390073 14 + 137163284 ccggtcatggtggc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740370 14 + 135337776 ccggtcatggtggc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253917 14 - 8369578 ctggtcatggtggc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97911999 14 + 106955855 ccactcatggtggc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027052 14 + 133663169 CTAGTTATggtgac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275249 14 + 137757926 CTAGTTATggtgac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673768 14 - 16319837 ctagttatggtgac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297700 14 + 20526591 ctggttatggtgac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269068 14 + 128539186 ctggttatggtgac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620617 14 + 6255621 ctggttatggtgac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646946 14 - 8658521 ccggtcatggtgac i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850757 14 + 124281992 ctggtcatggtggc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492788 14 - 9212255 ctggtcatggtggc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911901 14 + 4466143 ctggtcatggtggc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614539 14 + 5364348 ctggtcatggtggc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4336483 14 + 7922563 CTGGGTGTGGTGGT i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9496996 680 - 31815103 I e mm10.chr5 124829955 56 + 151834684 I e proCoq1.NW_012154285v1 6750839 93 - 9870158 I e dasNov3.JH568189 872597 45 - 1116856 I e canFam3.chr26 33184721 0 - 38964690 C a score=1140701.000000 s hg38.chr12_KI270834v1_alt 104462 138 + 119498 tcgcacctgtaatcccttctttggaaggccaagaagggcagatcgcttgagcccagaagttcaagaccagcctgggcaaccaagcaagatcccatctctaca-aaaaataaacaaaaaatcaaaac--------------------aaaaaaac-aaaaa s panTro5.chr12 127390087 136 + 137163284 tcgcacctgtaatcccttctttggaaggccaagaagggcagatcgcttgagcccagaagttcaagaccagcctgggcaaccatgcaagatcccatctctaca-aaaaataaacgaaaaatcaaaac----------------------aaaaac-aaaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740384 136 + 135337776 tcgcacctgtaatcccttctttggaaggccaagaagggcagatcgcttgagcccagaagttcaagaccagcctgggcaaccatgcaagatcccatctctaca-aaaaataaacgaaaaatcaaaac----------------------aaaaac-aaaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8253931 136 - 8369578 tcgcacctgtaatcccttctttggaaggccaagaagggcagatcgcttgagcccagaagttcaagaccagcctgggcaaccaagcaagagcccatctctaca-aaaaataaacaaaaaatcaaaac----------------------aaaaac-agaaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97912013 157 + 106955855 tcgcacctgtaatctcttctttggaaggccaagaagggcagatatcttgagcccagaagttcaagaccagcctgggcaaccaagcaagatcccatctctaca-aaaaataaacaaaaaatcaaaacaaaaacaaaaa-attaaacaaaaaaaac-aaaaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027066 151 + 133663169 tcgcacctgtaatcccttctttggaaggccaagaagggcagattgcttgagccgagaagttcaagaccagcctgggccaccaagcaagatcccatctctaca-aaa---aaataaaaaatcaaaacaaaaacaaaaacaaaaaatt----aaac-aaaaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275263 151 + 137757926 tcgcacctgtaatcccttctttggaaggccaagaagggcagatcgcttgagccgagaagttcaagaccagcctgggccaccaagcaagatcccatctctaca-aaa---aaataaaaaatcaaaacaaaaacaaaaacaaaaaatt----aaac-aaaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673782 155 - 16319837 tcgcacctgtaatcccttctttggaaggccaagaagggcagatcgcttgagccgagaagttcaagaccagcctgggccaccaagcaagatcccatctctaca-aaa---aaataaaaaatcaaaacaaaaacaaaaacaaaaaattaaacaaac-aaaaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297714 155 + 20526591 tcgcacctgtaatcccttctttggaaggccaagaagggcagatcgcttgagccgagaagttcaagaccagcctgggccaccaagcaagatcccatctctaca-aaa---aaataaaaaatcaaaacaaaaacaaaaacaaaaaattaaacaaac-aaaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269082 155 + 128539186 tcgcacctgtaatcccttctttggaaggccaagaagggcagatcgcttgagccgagaagttcaagaccagcctgggccaccaagcaagatcccatctctaca-aaa---aaataaaaaatcaaaacaaaaacaaaaacaaaaaattaaacaaac-aaaaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620631 155 + 6255621 tcgcacctgtaatcccttctttggaaggccaagaagcgcagatcgcttgagccgagaagttcaagaccagcctgggccaccaagcaagatcccatctctaca-aaa---aaataaaaaatcaaaacaaaaacaaaaacaaaaaattaaacaaac-aaaaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4646960 154 - 8658521 ttgcacctgtaatcccttcttcggaaggtcaagaagggcagatcgcttgagcccagaagttcaagaccagcctgggccaccaagcaagatcccatctctaca-aaaaataaacaaaaaatcaaaacagaaacaa----aaaaaattaaacaaaa-aacaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850771 124 + 124281992 ttgcacctgtaatcccgtctttggaaggccaagaagggcagatcgcttgagcccaggagttcaag-------------accaagcaagatcccatctctact--aaaaaaaaaaaaaaattaaaccca--------------------aaaaac-aaaaa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492802 118 - 9212255 ttgcacctgtaatcccttctttggaaggccaagaagggcagatcacttgagcccaggagttcaag-------------accaagcgagatcccatctctact-gaaaaaaaaaaaaaaatcaaac---------------------------ac-aaaaa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2911915 127 + 4466143 ttgcacctgtaatcccttctttggaaggccaagaacggcagatcacttaagcccaggagttcaag-------------accaagcaagatcccatctctactaaaaaaaaagaagaaaattaaacaca--------------------aaaaacaaaaaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614553 128 + 5364348 ttgcacctgtaatcccttctttggaaggccaagaagggcagatcgcttgagcccaggagttcaag-------------accaagcaagatcccatctctact-aaaaaaaaaaaaaaaattaaacacacac-----------------acacac-acaaa i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9496996 680 - 31815103 I e mm10.chr5 124829955 56 + 151834684 I e proCoq1.NW_012154285v1 6750839 93 - 9870158 I e dasNov3.JH568189 872597 45 - 1116856 I e canFam3.chr26 33184721 0 - 38964690 C e otoGar3.GL873618 4336497 0 + 7922563 C a score=67464.000000 s hg38.chr12_KI270834v1_alt 104600 17 + 119498 aca------aaaatattagctga s panTro5.chr12 127390223 17 + 137163284 aca------aaaatattagctga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740520 17 + 135337776 aca------aaaatattagctga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8254067 17 - 8369578 aca------aaaatattagctga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97912170 17 + 106955855 aca------aaaatattagctga i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027217 20 + 133663169 acaa---taaaaaaattagtcga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275414 20 + 137757926 acaa---taaaaaaattagtcga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673937 20 - 16319837 acaa---taaaaaaattagtcga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297869 20 + 20526591 acaa---taaaaaaattagtgga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269237 20 + 128539186 acaa---ttaaaaaattagttga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620786 20 + 6255621 acaa---taaaaaaattagtcga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4647114 20 - 8658521 aaaa---taaaaaaattcattga i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850895 18 + 124281992 ataaaat----aaa-ttaggtga i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492920 19 - 9212255 ataaaat----aaagttagttga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2912042 23 + 4466143 ataaaattaaaaaagttagttga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614681 23 + 5364348 taaaaataaaaaaaattagttga i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4336497 17 + 7922563 ------ATAGAAATTTTAGTTGA i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9496996 680 - 31815103 I e mm10.chr5 124829955 56 + 151834684 I e proCoq1.NW_012154285v1 6750839 93 - 9870158 I e dasNov3.JH568189 872597 45 - 1116856 I e canFam3.chr26 33184721 0 - 38964690 C a score=394641.000000 s hg38.chr12_KI270834v1_alt 104617 39 + 119498 gtgtggtggtgaatacctgtagtaccagctacttgggag s panTro5.chr12 127390240 39 + 137163284 gtgtggtggtgaatacctgtagtaccagctacctgggag i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740537 39 + 135337776 gtgtggtggtgaatacctgtagtaccagctacttgggag i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8254084 39 - 8369578 gtgtggtggtgaatacctgtagtaccagctacttgggag i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97912187 39 + 106955855 gtgtggtggtgaacacctgtagtaccagctacttgggag i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027237 39 + 133663169 gtgtggtagtgaacacctgtagtaccagctacttgggag i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275434 39 + 137757926 gtgtggtagtgaacacctgtagtaccagctacttgggag i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673957 39 - 16319837 gtgtggtagtgaacacctgtagtaccagctacttgggag i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297889 39 + 20526591 gtgtggtagtgaacacctgtagtaccagctacttgggag i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269257 39 + 128539186 gtgtggtagtgaacacctgtagtaccagctacttgggag i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620806 39 + 6255621 gtgtggtagtgaacacctgtagtaccagctacttgggag i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4647134 39 - 8658521 gtgtggtggtgaacacctgtagcaccagctacttgggag i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850913 39 + 124281992 atgtggtggtgaacacctgtactcccagctacttgggag i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492939 39 - 9212255 atgtggtggtgaacacctgtactcccagctacttgggag i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2912065 39 + 4466143 atgtggtggcgaacacctgtactcccagctacttgggag i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614704 38 + 5364348 atgtggt-gtgaacacctgtactcccagctacttgggag i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9496996 680 - 31815103 I e mm10.chr5 124829955 56 + 151834684 I e proCoq1.NW_012154285v1 6750839 93 - 9870158 I e dasNov3.JH568189 872597 45 - 1116856 I e canFam3.chr26 33184721 0 - 38964690 C e otoGar3.GL873618 4336514 0 + 7922563 C a score=847365.000000 s hg38.chr12_KI270834v1_alt 104656 105 + 119498 gctgagatgggagaagagcttgagcccaggaggtcgaggctgtagtgatcaatgaccatgtcagtgcacttc-----agcctgggtgac----taagaccctgtctc-----aaaaaaa s panTro5.chr12 127390279 110 + 137163284 gctgagatgggagaagagcttgagcccaggaggtcgaggctgtagtgatcaatgaccatgtcagtgcacttc-----agcctgggtgac----taagaccctgtctcaaaaaaaaaaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740576 106 + 135337776 gctgagatgggagaagagcttgagcccaggaggtcgaggctgtagtgatcaatgaccatgtcagtgcacttc-----agcctgggtgac----taagaccctgtctc----aaaaaaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8254123 106 - 8369578 gctgagatgggagaagagcttgagcccaggaggtcgaggctgtagtgatcaatgaccatgtcactgcacttc-----agcctgggtgac----taagaccctgtctc----aaaaaaaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97912226 105 + 106955855 gctgagatgggagaaatgcttgagcccaggaggtcgaggctgtagtgatcaatggtcatgtcagtgcatttc-----agcctggctgac----taagaccctgtctc-----aaaaaaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027276 111 + 133663169 gctgagatgggagaaatgcttgagcccaggaggtcgaggctgtagtgatcaatg--cacgtcagtgcactcc-----agcctgggtgactgagtaagaccctgtctc-caaaaaaaaaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275473 111 + 137757926 gctgagatgggagaaatgcttgagcccaggaggtcgaggctgtagtgatcaatg--cacgtcagtgcactcc-----agcctgggtgactgagtaagaccctgtctc-caaaaaaaaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10673996 111 - 16319837 gctgagatgggagaaatgcttgagcccaggaggtcgaggctgtagtgatcaatg--cacgtcagtgcactcc-----agcctgggtgactgagtaagaccctgtctc-caaaaaaaaaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12297928 111 + 20526591 gctgagatgggagaaatgcttgagcccaggaggtcgaggctgtagtgatcaatg--cacgtcagtgcactcc-----agcctgggtgactgagtaagaccctgtctc-aaaaaaaaaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269296 111 + 128539186 gctgagatgggagaaatgcttgagcccaggaggtcgaggctgtagtgatcaatg--cacgtcagtgcactcc-----agcctgggtgactgagtaagaccctgtctc-aaaaaaaaaaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620845 102 + 6255621 gctgagatgggagaaatgcttgagcccaggaggtcgaggctgtagtgatcaatg--cacgtcagtgcactcc-----agcctgggtgact---taagaccctgtctc-------aaaaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4647173 113 - 8658521 gctgagatgggagaaatgcttgagcccaggaggtcgaggctgtagtgatcaatggtcacgtcagtgcactcc-----agcctgggtgactgagtgagaccctgtctc-aaaaaaaaaaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114850952 107 + 124281992 gctgagatgggagagatgcttgaacctaggaggttggggctgtagtgagctgtgattgtgccactgcactccaccctagcctgggtcac----tgagatcctggctc--------aaaa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 492978 112 - 9212255 gctgagatgggagagatgcttgaacccaggaggtcggggctgtagtgtgctgtgatcatgccactgcactccactctagcctgggtgac----tgagatcctgtctc---aaaaaaaaa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2912104 108 + 4466143 gctgagatggaagagatgcctgaacccaggagatcggggctgtagtgagctgtgatcatgccactgcactccactctaacctgggtgac----tgagatcctgtctc-------aaaaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614742 98 + 5364348 gctgagatgggagagatgcttgaacccaggaggtcggggctatagtgagctgtgatcatgccactgcactccactctagcctgggtgac----tgaga-----------------aaaa i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 872642 44 - 1116856 GCTGGGTTAGGGGAGGTG-TTGAATTT------------------TTATTTATGAACATTTTA-------------------------------------------------------- i dasNov3.JH568189 I 45 C 0 e micMur3.chr21 9496996 680 - 31815103 I e mm10.chr5 124829955 56 + 151834684 I e proCoq1.NW_012154285v1 6750839 93 - 9870158 I e canFam3.chr26 33184721 0 - 38964690 C e otoGar3.GL873618 4336514 0 + 7922563 C a score=-11128.000000 s hg38.chr12_KI270834v1_alt 104761 4 + 119498 a------aaa s panTro5.chr12 127390389 4 + 137163284 a------aaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740682 4 + 135337776 a------aaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8254229 4 - 8369578 a------aaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97912331 4 + 106955855 a------aaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027387 10 + 133663169 aaaaaaaaaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275584 7 + 137757926 a---aagaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10674107 4 - 16319837 a------aaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12298039 3 + 20526591 C-------CA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269407 8 + 128539186 a--aaaaaaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620947 8 + 6255621 a--aaaaaaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4647286 2 - 8658521 a--------a i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114851059 4 + 124281992 c------aaa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 493090 4 - 9212255 a------aaa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2912212 4 + 4466143 a------aaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614840 4 + 5364348 a------aaa i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4336514 4 + 7922563 ------AAAC i otoGar3.GL873618 C 0 C 0 e micMur3.chr21 9496996 680 - 31815103 I e mm10.chr5 124829955 56 + 151834684 I e proCoq1.NW_012154285v1 6750839 93 - 9870158 I e dasNov3.JH568189 872686 0 - 1116856 C e canFam3.chr26 33184721 0 - 38964690 C a score=563465.000000 s hg38.chr12_KI270834v1_alt 104765 47 + 119498 aaGTCAC--------CCTCTAAACAGTGGAAATTAGTCTTGCATGTCTTGGAGAC s panTro5.chr12 127390393 46 + 137163284 aaGTCAC--------CCTCTAAACAGTGGAAATTAGTCTTGCATGTC-TGGAGAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740686 46 + 135337776 aaGTCAC--------CCTCTAAACAGTGGAAATTAGTCTTGCATGTC-TGGAGAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8254233 46 - 8369578 aaGTCAC--------CCTCTAAACAGTGGAAATTAGTCTTGCATGTC-TGGAGAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97912335 46 + 106955855 aaGTCAC--------CCTCTAAACAGTGGAAATTAGTCTTGCATATC-TGGGGAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027397 46 + 133663169 aaGTCAC--------CCTCTAAACAGTAGAAATTAGTCTTGCATGTC-TGGGGAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275591 46 + 137757926 aaGTCAC--------CCTCTAAACAGTAGAAATTAGTCTTGCATGTC-TGGGGAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10674111 46 - 16319837 aaaTCAC--------CCTCTAAACAGTAGAAATTAGTCTTGCATGTC-TGGGGAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12298042 46 + 20526591 AAGTCAC--------CCTCTAAACAGTAGAAATTAGTCTTGCATGTC-TGGGGAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269415 46 + 128539186 aaGTCAC--------CCTCTAAACAGTAGAAATTAGTCTTGCATGTC-TGGGGAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 620955 46 + 6255621 aaGTCAC--------CCTCTAAACAGTAGAAATTAGTCTTGCATGTC-TGGGGAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4647288 46 - 8658521 CAGTCAC--------CCTCTAAACAGTAGAAATTAGTCTTGCATGTC-TGAGGAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114851063 46 + 124281992 aaGTTGT--------CCTCTAAACAGTGGAAATTAGTCTTGCATGTC-TGGGGAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 493094 46 - 9212255 aaGTTGC--------CCTCTAAACAGTGGAAATTAGTCTTGCGTGTC-TGGGGAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2912216 46 + 4466143 aaGTTGC--------CCTCTACACAGTGGAAATTAGTCTTGCGTGTC-TGGGGAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614844 46 + 5364348 aaGTTGC--------CCTCTAAACAGTGGAAATTAGTCTTGCATGTC-TGGGGAC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4336518 46 + 7922563 GTGTTAC--------CTAGTAAGCAGTGGAAATTAGACTCAGATGTT-TGGGGAT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33184721 54 - 38964690 AGGTCACCCATTAAGCCATTAAGCAGTGGAAATTAGTCTTGCATATC-TGGGGAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 872686 34 - 1116856 ---------------CCCACATGCAGTGGAACTGAGTT-----TGTC-TGGGCAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9496996 680 - 31815103 I e mm10.chr5 124829955 56 + 151834684 I e proCoq1.NW_012154285v1 6750839 93 - 9870158 I a score=702037.000000 s hg38.chr12_KI270834v1_alt 104812 54 + 119498 TTTGAGGCTGTGGGCCCTGAGAAAGCACAGGTGGCTGGACAGTGCCACCTCCGT-- s panTro5.chr12 127390439 54 + 137163284 TTTGAGGCTGTGGGCCCTGAGAAAGCACAGGTGGCTGGACAGTGCCACCTCCGT-- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740732 54 + 135337776 TTTGAGGCTGTGGGCCCTGAGAAAGCACAGGTGGCTGGACAGTGCCACCTCCGT-- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8254279 54 - 8369578 TTTGAGGCTGTGGGCCCTGAGAAAGCACAGGTGGCTGGACAGTGCCACCTCCGT-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97912381 54 + 106955855 TTTGAGGCTGTGGGCCCTGAGAAAGCACAGGTGGCTGGACAGTGCCACCTCCGT-- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027443 54 + 133663169 TTTGAGGCTGTGGGCCCTGAGAAAGCACAGGTGGCTGGACAGTGCCACCTCCGT-- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275637 54 + 137757926 TTTGAGGCTGTGGGCCCTGAGAAAGCACAGGTGGCTGGACAGTGCCACCTCCGT-- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10674157 54 - 16319837 TTTGAGGCTGTGGGCCCTGAGAAAGCACAGGTGGCTGGACAGTGCCACCTCCGT-- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12298088 54 + 20526591 TTGGAGGCTGTGGGCCCTGAGAAAGCACAGGTGGCTGGACAGTGCCACCTCCGT-- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269461 54 + 128539186 TTTGAGGCTGTGGGCCCTGAGAAAGCACAGGTGGCTGGACAGTGCCACCTCCGT-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 621001 54 + 6255621 TTTGAGGCTGTGGGCCCTGAGAAAGCACAGGTGGCTGGACAGTGCCACCTCCGT-- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4647334 54 - 8658521 TTTGAGGCTGTGGGCCCTGAGAAAGCACAGGTGGCTAGATAGTGCCACCTCCAT-- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114851109 54 + 124281992 TCTGAGGCTGTGGGCCCTGAGAAAGCGAAGGTGGAGGGACAGTGCCACTTCCGT-- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 493140 54 - 9212255 TTTGAGGCTTTGGGTCCTGAGAAAGCGAAGGTGGCTGGACAGTGCCACCTCCGT-- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2912262 53 + 4466143 TTTGAAGCTGTGGGCCCTAAGAAAGC-AAAGTGGCTGGACAGTGCCACCTCCGT-- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614890 54 + 5364348 TTTGAGGCTGTGGGCCCTGGGAAAGCGAAGGTGGCTGGACAGTGCCACCTCTGC-- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9497676 51 - 31815103 TTTGAGGCCGTGGGCCCTCCGAAATCACAGGTGGCTTGACGCTGTCACCTC----- i micMur3.chr21 I 680 C 0 s otoGar3.GL873618 4336564 54 + 7922563 TTTGAGGCTCTGGGCCCTCCAAAATCAAAGGTGGCTTGATGCTGCTACCTCTGT-- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33184775 44 - 38964690 GCTGAGGCTGTGGGACCTCAGAAATCGAGGGTGGTATTACAGGG------------ i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 872720 43 - 1116856 TTTGAGGCTGTGGGCCCTCAAAAACCA-AGGTG------------TACCTTCTTTT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124829955 56 + 151834684 I e proCoq1.NW_012154285v1 6750839 93 - 9870158 I a score=23604.000000 s hg38.chr12_KI270834v1_alt 104866 2 + 119498 TG s panTro5.chr12 127390493 2 + 137163284 TG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740786 2 + 135337776 TG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8254333 2 - 8369578 TG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97912435 2 + 106955855 TG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027497 2 + 133663169 TG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275691 2 + 137757926 TG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10674211 2 - 16319837 TG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12298142 2 + 20526591 TG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269515 2 + 128539186 TG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 621055 2 + 6255621 TG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4647388 2 - 8658521 TG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114851163 2 + 124281992 GG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 493194 2 - 9212255 GG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2912315 2 + 4466143 GG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614944 2 + 5364348 GG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9497727 2 - 31815103 TG i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6750932 2 - 9870158 TG i proCoq1.NW_012154285v1 I 93 C 0 s otoGar3.GL873618 4336618 2 + 7922563 TG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33184819 2 - 38964690 TA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 872763 2 - 1116856 TG i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124829955 56 + 151834684 I a score=2863390.000000 s hg38.chr12_KI270834v1_alt 104868 150 + 119498 TTCTCTG---TGATTGCAGAAGCCATCGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCACCCCAACGCTGAGATTGGCTATTACACGCAGGCGGCTCGAGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGT s panTro5.chr12 127390495 146 + 137163284 TTC-------TGATTGCAGAAGCCATCGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCACCCCAACGCTGAGATTGGCTATTACACGCAGGCGGCTCGAGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740788 146 + 135337776 TTC-------TGATTGCAGAAGCCATCGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCACCCCAACGCTGAGATTGGCTATTACACGCAGGCGGCTCGAGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8254335 150 - 8369578 TTCTCTG---TGACTGCAGAAGCCATCGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCACCCCAACGCTGAGATTGGCTATTACACGCAGGCGGCTCGAGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97912437 150 + 106955855 TTCTCTG---TGACTGCAGAAGCCATCGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCACCCCAACGCTGAGATTGGCTATTACACGCAGGCGGCTCGAGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027499 149 + 133663169 TTCTCT----TGATTGCAGAAGCCATTGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCACTCCAATGCTGAGATTGGCTATTACACACAGGCGGCTCGAGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275693 149 + 137757926 TTCTCT----TGATTGCAGAAGCCATTGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCACTCCAATGCTGAGATTGGCTATTACACACAGGCGGCTCGAGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10674213 149 - 16319837 TTCTCT----TGATTGCAGAAGCCATTGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCACTCCAATGCTGAGATTGGCTATTACACACAGGCGGCTCGAGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12298144 149 + 20526591 TTCTCT----TGATTGCAGAAGCCATTGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCACTCCAACGCTGAGATTGGCTATTACACACAGGCGGCTCGAGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269517 149 + 128539186 TTCTCT----TGATTGCAGAAGCCATTGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGCCTCCACTCCAACGCTGAGATTGGCTATTACACACAGGCGGCTCGAGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 621057 149 + 6255621 TTCTCT----TGATTGCAGAAGCCATTGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCACTCCAACGCTGAGATTGGCTATTACACACAGGCGGCTCGAGACATGTGGGCGCACCTGCTGGAGCTGCAGCCTCAGACAGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4647390 149 - 8658521 TTCTCT----TGATTGCAGAAGCCATTGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCATTCCAACGCTGAGATTGGCTATTACACACAGGCGGCTCGAGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114851165 150 + 124281992 TTCTCTG---TGACTGCAGAAGCCATTGAGGCCCTCCCGCTTGCCAACACGCCGGAAGTGTTTGGTCTCCACTCCAACGCCGAGATTGGCTATTACACGCAGGCAGCTCGGGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 493196 150 - 9212255 TTCTCTG---TGATTGCAGAAGCCATTGAGGCCCTCCCGCTTGCCAACACGCCGGAAGTGTTTGGTCTCCACTCCAACGCTGAGATTGGCTATTACACGCAGGCAGCTCGGGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2912317 150 + 4466143 TTCTCTG---TGATTGCAGAAGCCATTGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCACTCCAACGCTGAGATTGGCTATTACACGCAGGCAGCTCGGGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1614946 148 + 5364348 T--GCTG---TGATTGCAGAAGCCATTGAGGCCCTCCCTCTCGCCAACACGCCGGAAGTGTTTGGCCTCCACTCCAACGCTGAGATCGGCTATTACACGCAGGCAGCTCGGGACACGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9497729 150 - 31815103 TTCCCCG---CGGTCACAGAAGCCATCGAGGCCCTCCCGCTTGCCAACACGCCCGAAGTGTTTGGCCTTCACTCCAACGCCGAGATCGGCTACTACACGCAGGCGGCGCGAGACATGTGGGCGCACCTGCTGGAGCTGCAGCCTCAGACGGGT i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6750934 150 - 9870158 TTCTCTG---TGACGACAGAAGCCATCGAGGCCCTGCCGCTTGCAAACACGCCCGAAGTGTTTGGCCTTCATTCCAATGCCGAGATCGGCTATTACACGCAGGCGGCTCGAGACATGTGGACTCACCTCCTGGAGCTGCAGCCTCAGACGGGT i proCoq1.NW_012154285v1 C 0 I 138 s otoGar3.GL873618 4336620 150 + 7922563 TTCTCTG---TGATCATAGAAGCCATTGAGGCCCTCCCACTTGCTAACACACCTGAAGTGTTTGGCCTTCATTCCAATGCCGAGATTGGATATTACACACAGGCGGCTCGGGACATGTGGACTCATCTCCTGGAGCTACAGCCTCAGACGGGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124830011 150 + 151834684 TTCTCTG---TAATTCTAGAAGCCATTGAGGCCCTCCCACTCGCCAACACACCAGAAGTGTTTGGTCTCCATTCCAATGCCGAGATTGGCTATTACACACAGGCAGCTCGAGACATGTGGGGTCATCTGCTGGAGCTGCAGCCGCAGACAGGT i mm10.chr5 I 56 C 0 s canFam3.chr26 33184821 153 - 38964690 TTCTCTGTTCTGATTATAGAAGCCATTGAGGCCCTCCCACTGGCCAACACACCTGAAGTGTTTGGTCTTCATTCCAATGCTGAGATCGGCTATTACACTCAGGCGGCTCGAGACATGTGGGCTCACTTGCTGGAGTTGCAGCCTCAGACGGGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 872765 150 - 1116856 ATCTCTA---TGATTGTAGAAGCCATTGAGGCCCTTCCACTCTCCAACACCCCTGAAGTGTTTGGTCTTCACTCCAATGCTGAGATTGGCTATTACACTCAGGCAGCTCGAGCCATGTGGGATCACCTTCTGGAGCTACAACCTCAGACAGGT i dasNov3.JH568189 C 0 C 0 a score=29985.000000 s hg38.chr12_KI270834v1_alt 105018 4 + 119498 AAAC s panTro5.chr12 127390641 4 + 137163284 AAAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740934 4 + 135337776 AAAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8254485 4 - 8369578 AAAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97912587 4 + 106955855 AAAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027648 4 + 133663169 AAAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275842 4 + 137757926 AAAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10674362 4 - 16319837 AAAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12298293 4 + 20526591 AAAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269666 4 + 128539186 AAAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 621206 4 + 6255621 AAAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4647539 4 - 8658521 AAAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114851315 4 + 124281992 AAAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 493346 4 - 9212255 AAAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2912467 4 + 4466143 AAAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1615094 3 + 5364348 -AAC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9497879 3 - 31815103 -GAG i micMur3.chr21 C 0 I 87 s otoGar3.GL873618 4336770 3 + 7922563 -AAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124830161 3 + 151834684 ATA- i mm10.chr5 C 0 C 0 s canFam3.chr26 33184974 4 - 38964690 AAAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 872915 4 - 1116856 GAAG i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6751084 138 - 9870158 I a score=233278.000000 s hg38.chr12_KI270834v1_alt 105022 25 + 119498 TCT-ACTCAGGAGGACTTCATTAGTT s panTro5.chr12 127390645 25 + 137163284 TCT-ACTCAGGAGGACTTCATTAGTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740938 25 + 135337776 TCT-ACTCAGGAGGACTTCATTAGTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8254489 25 - 8369578 TCT-ACTCAGGAGGACTTCATTAGTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97912591 25 + 106955855 TCT-ACTCAGGAGGACTTCATTAGTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027652 26 + 133663169 TCTTACTCCGGAGGACTTCATTAGTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275846 26 + 137757926 TCTTACTCCGGAGGACTTCATTAGTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10674366 26 - 16319837 TCTTACTCCGGAGGACTTCATGAGTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12298297 26 + 20526591 TCTGACTCCGGAGGACTTCATTAGTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269670 26 + 128539186 TCTTACTCCGGAGGACTTCATTAGTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 621210 26 + 6255621 TCTGACTCCGGAGGACTTCATTAGTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4647543 26 - 8658521 TCTTACTCAGGAGGACTTCATTAGTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114851319 25 + 124281992 TCT-ACTCCGGACGACTTCGTTAGTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 493350 24 - 9212255 TCT-ACTCCGGATGAC-TCATTAGTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2912471 25 + 4466143 TCT-GCTCCAGACGATGTCATTAGTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1615097 25 + 5364348 TCT-ACTCTGGACGACTTCATTGGTT i aotNan1.NW_018491581v1 C 0 I 315 s otoGar3.GL873618 4336773 24 + 7922563 TCT-GCTC-AGAGGAGCACATACGTT i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124830164 22 + 151834684 ----GCTGCCAGGGAGCTCGTTAGCT i mm10.chr5 C 0 C 0 s canFam3.chr26 33184978 25 - 38964690 TCT-ACCGTGGAGGACTGAATTAGTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 872919 23 - 1116856 CCT-TTCCCACACATTTTCATTAG-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9497882 87 - 31815103 I e proCoq1.NW_012154285v1 6751084 138 - 9870158 I a score=523479.000000 s hg38.chr12_KI270834v1_alt 105047 47 + 119498 TGATTGGGGTT-----------------TT-ACGAT---------------------TGC----TTCTTGTAGCCCTCCCACGTTG--CTGA s panTro5.chr12 127390670 47 + 137163284 TGATTGGGGTT-----------------TT-ACGAT---------------------TGC----TTCTTGTAGCCCTCCCACGTTG--CTGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125740963 47 + 135337776 TGATTGGGGTT-----------------TT-ACGAT---------------------TGC----TTCTTGTAGCCCTCCCACGTTG--CTGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8254514 47 - 8369578 TGATTGGGGTT-----------------TT-ACGAT---------------------TGC----TTCTTGTAGCCCTCCCACGTTG--CTGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97912616 46 + 106955855 TGATT-GGGTT-----------------TT-ACAAT---------------------TGC----TTCTTGTAGCCCTCCCACATTG--CTGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027678 47 + 133663169 TGAGTGGGGTT-----------------TT-ACGAT---------------------TGC----TTCTTGTAGCTCTCCCACATTG--CTGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275872 47 + 137757926 TGAGTGGGGTT-----------------TT-ACGAT---------------------TGC----TTCTTGTAGCTCTCCCACATTG--CTGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10674392 47 - 16319837 TGAGTGGGGTT-----------------TT-ACGAT---------------------TGC----TTCTTGTAGCTCTCCCACATTG--CTGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12298323 47 + 20526591 TGAGTGGGGTT-----------------TT-ACGAT---------------------TGC----TTCTTGTAGCTCTCCCACATTG--CTGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269696 47 + 128539186 TGAGTGGGGTT-----------------TT-ATGAT---------------------TGC----TTCTTGTAGCTCTCCCACATTG--CTGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 621236 47 + 6255621 TGAGTGGGGTT-----------------TT-ACGAT---------------------TGC----TTCTTGTAGCTCTCCCACATTG--CTGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4647569 47 - 8658521 TGAGTGGGGTT-----------------TT-ACGAT---------------------TGC----TTCTTGTAGCTCTCCCACATTG--CTGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114851344 47 + 124281992 TGATTGGGGTT-----------------TT-ACGAT---------------------TGC----TTCTCGTAGCTCTCCCACATTG--CTGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 493374 47 - 9212255 TGATTGGGGTT-----------------TT-ATGAT---------------------TGC----TTCTCGTAGCTTTCCCACATTG--CTGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2912496 48 + 4466143 TGATTGGGGTT-----------------TTAACGAT---------------------TGT----TTCTTGTAGCTCTCCCACATTG--CTGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1615437 47 + 5364348 TGATTGGGGTT-----------------TT-ACGAT---------------------TGC----TCCTCGTAGCTCTCCCACATTG--CTGA i aotNan1.NW_018491581v1 I 315 C 0 s otoGar3.GL873618 4336798 67 + 7922563 TGATTAGGGTC-----------------TT-GCAGTGTCAACACAGGTGCTACTGGCTGG----TTCTTGGAGCTGTCCCATGTTG--CTG- i otoGar3.GL873618 I 1 C 0 s mm10.chr5 124830186 36 + 151834684 TGCCTGGGGTC-----------------AG-AGGG----------------------TGC----TCCTGGTGG----------TTG--GAGG i mm10.chr5 C 0 I 1 s canFam3.chr26 33185003 62 - 38964690 TGGTTAGGGTGGAAGGTGTTGGCACAAAGT-GCTAT---------------------TGG----TTCTTGTAG--TTTCTATATTG--TTGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 872942 46 - 1116856 -------GGTG-----------------TA-ACGTT---------------------TGTTTAGTTCTTATTGCTTTCCCACATTGCTCTGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9497882 87 - 31815103 I e proCoq1.NW_012154285v1 6751084 138 - 9870158 I a score=566887.000000 s hg38.chr12_KI270834v1_alt 105094 48 + 119498 TGCCTTTCCCAGAACTGGAAGGC-TCAGGAGGCTCCG--------------------GTTCT-GCACGTG s panTro5.chr12 127390717 48 + 137163284 TGCCTTTCCCAGAACTGGAAGGC-TCAGGAGGCTCTG--------------------GTTCT-GCATGTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125741010 48 + 135337776 TGCCTTTCCCAGAACTGGAAGGC-TCAGGAGGCTCTG--------------------GTTCT-GCATGTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8254561 48 - 8369578 TGCCTTTCCCAGAACTGGAAGGC-TTAGGAGGCTCCG--------------------GTTCT-GCACGTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97912662 48 + 106955855 TGCCTTTCCCAGAACCAGAAGGC-TCAGGAGGCTCCG--------------------GTTCT-GCACACA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027725 48 + 133663169 TGCCTTTCCCAGAACCGGAAGGC-TCAGGAGGCTCCA--------------------GTTCT-ACACATG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275919 48 + 137757926 TGCCTTTCCCAGAACCGCAAGGC-TCAGGAGGCTCCA--------------------GTTCT-ACACATG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10674439 48 - 16319837 TGCCTTTCCCAGAACCGGAAGGC-TCAGGAGGCTCCA--------------------GTTCT-ACACATG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12298370 48 + 20526591 TGGCTTTCCCAGAACCGGAAGGC-TCAGGAGGCTCCA--------------------GTTCT-ACACATA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269743 48 + 128539186 TGCCTTTCCCAGAACTGGAAGGC-TCAGAAGGCTCCA--------------------GTTCT-ACACATA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 621283 48 + 6255621 TGGCTTTCCCAGAACCGGAAGGC-TCAGGAGGCTCCA--------------------GTTCT-ACACATA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4647616 48 - 8658521 TGCCTTTCCCAGAACCGGAAGGC-TCAGGAGGCTCTA--------------------GTTCT-ACACACA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114851391 48 + 124281992 TGCCCTTCCCTGAACCGGCAGGC-TCAGGAGGCCCTG--------------------GTTCT-GTACACA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 493421 48 - 9212255 TGCCTTTCCCCGAACCGGCAGGG-TCAGGAGGCCCCG--------------------GTTCC-GCACACA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2912544 48 + 4466143 TGCCTCTCCCCGAACCGGCAGGC-TCAGGAGGCCCCG--------------------GTTCT-GCACACA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1615484 48 + 5364348 TGCCTTTCCCCGAACCCGCAGGC-TCAGGAGGCCCTG--------------------GTTCT-GCACACA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9497969 47 - 31815103 TGCCCTTCCCAGAGCCGGGAGGC-TCCGGAGGCCCTG--------------------CGCC--GCACGCA i micMur3.chr21 I 87 C 0 s otoGar3.GL873618 4336865 46 + 7922563 TGCCCTTCCTAGAGCCAGGAGGC-CCAGAATGCCCCA--------------------TGTT---CACCTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124830223 68 + 151834684 AGCTTTTCCAAGAATGATGAGGC-TTCCGAGGTCCCACGAGGCTTCCGAAGTCCCATCTTCT-CAGCATC i mm10.chr5 I 1 C 0 s canFam3.chr26 33185065 50 - 38964690 TGCCATTCCAAGAACCAGAAGGCATCTGGATGCCCCA--------------------GTCCTAACACCCA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 872988 48 - 1116856 TGCTTTTCTGAGAATCAGAGGGC-TTGGAATGTTCCA--------------------GTCCT-GTGCTCA i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6751084 138 - 9870158 I a score=5090639.000000 s hg38.chr12_KI270834v1_alt 105142 289 + 119498 GATGCCTTGCTTTCTCTGAAAAGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGTATCAGCCGCGATGATTATATTGGCCAAGTGGCCAAAGAAATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAGGTGAGGAAGCGCCTCGGAACAGGACTCTCCCCCACTTCGGTGGTGCTCCTGCAGGAACTGGAACGCTTCAACAAGCTTGTGGTCCGGATGACGAAGTCTCTGGCTGAACTTCAAAGGGTGA-GCCTGTCTCTCATGTGCAGATTACTGCCTAGATA--CG s panTro5.chr12 127390765 287 + 137163284 GATGCCTTGCTTTCTCTGAGAAGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGTATCAGCCGCGATGATTATATTGGCCAAGTGGCCAAAGAAATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAGGTGAGGAAGCGCCTCGGAACAGGACTCTCCCCCACTTCGGTGGTGCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTTGTGGTCCGGATGACCAAGTCTCTGGCTGAACTTCAAAGGGTGA-GCCTGTCTCTC--GTGCAGATTACTGCCTAGATA--CG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125741058 287 + 135337776 GATGCCTTGCTTTCTCTGAAAAGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGTATCAGCCGCGATGATTATATTGGCCAAGTGGCCAAAGAAATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAGGTGAGGAAGCGCCTCGGAACAGGACTCTCCCCCACTTCGGTGGTGCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTTGTGGTCCGGATGACCAAGTCTCTGGCTGAACTTCAAAGGGTGA-GCCTGTCTCTC--GTGCAGATTACTGCCTAGATA--CG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8254609 287 - 8369578 GATGCCTTGCTTTCTCTGAAAAGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGTATCAGCCGCGACGATTATATTGGCCAAGTGGCCAAAGAAATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAGGTGAGGAAGCGCCTCGGAACAGGACTCTCTCCCACTTCGGTGGTGCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTTGTGGTCCGGATGACCAAGTCTCTGGCTGAACTTCAAAGGGTGA-GCCTGTCTCTC--GTGCAGATTACTGCCTAGATA--CG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97912710 287 + 106955855 GATGCCTTGTTTTCTCTGAAAAGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGTATCAGCCGCGATGATTATATTGGCCAAGTGGCCAAAGACATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAGGTGAGGAAGCGCCTCGGAACAGAAATCTCCCCGACTTCGGTGGTGCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTTGTGGTCCGGATGACCAAGTCTCTAGCTGAACTTCAAAGGGTGA-GCCTGTCTCTC--GTGCAGATTACTGCCTAGATA--CC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124027773 289 + 133663169 GATGCCTTGCTTTCTCTGAAATGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGCATCAGCCGCGATGATTATATTGGCCAAGTGGCCAAAGACATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAAGTGAGGAAGCGCCTTGGAACAGGAATCTCCCCCACTTCGGTGGTGCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTTGTGGTCCGGATGACCAAGTCTCTGGCTGAACTTCAAAGGGTGA-GCCCGTCTCTCATGCGTAGATTACTGCCTAGACA--TG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128275967 289 + 137757926 GATGCCTTGCTTTCTCTGAAATGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGCATCAGCCGCGATGATTATATTGGCCAAGTGGCCAAAGACATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAAGTGAGGAAGCGCCTTGGAACAGGAATCTCCCCCACTTCGGTGGTGCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTTGTGGTCCGGATGACCAAGTCTCTGGCTGAACTTCAAAGGGTGA-GCCTGTCTCTCATGCGTAGATTACTGCCTAGACA--TG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10674487 289 - 16319837 GATGCCTTGCTTTCTCTGAAATGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGCATCAGCCGCGATGATTATATTGGCCAAGTGGCCAAAGACATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAAGTGAGGAAGCGCCTTGGAACAGGAATCTCCCCCACTTCGGTGGTGCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTTGTGGTCCGGATGACCAAGTCTCTGGCTGAACTTCAAAGGGTGA-GCCTGTCTCTCATGTGTAGATTACTGCCTAGACA--TG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12298418 289 + 20526591 GATGCCTTGCTTTCTCTGAAAAGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGCATCAGCCGCGATGATTATATTGGCCAAGTGGCCAAAGACATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAAGTGAGGAAGCGCCTTGGAACAGGAATCTCCCCCACTTCGGTGGTGCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTTGTGGTCCGGATGACCAAGTCTCTGGCTGAACTTCAAAGGGTGA-GCCTGTCTCTCATGTGTAGATTACTGCCTAGACA--TG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119269791 289 + 128539186 GATGCCTTGCTTTCTCTGAAAAGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGCATCAGCCGCGATGATTATATTGGCCAAGTGGCCAAAGACATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAAGTGAGGAAGCGCCTTGGAACAGGAATCTCCCCCACTTTGGTGGTGCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTTGTGGTCCGGATGACCAAGTCTCTGGCTGAACTTCAAAGGGTGA-GCCTGTCTCTCATGTGTAGATTACTGCCTAGACA--TG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 621331 289 + 6255621 GATGCCTTGCTTTCTCTGAAAAGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGCATCAGCCGCGATGATTATATTGGCCAAGTGGCCAAAGACATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAAGTGAGGAAGCGCCTTGGAACAGGAATCTCCCCCACTTCGGTGGTGCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTTGTGGTCCGGATGACCAAGTCTCTGGCTGAACTTCAAAGGGTGA-GCCTGTCTCTCATGTGTAGATTACTGCCTAGACA--TG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4647664 289 - 8658521 GATGCCTTGCTTTCTCTGAAAAGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGCATCAGCCACGATGACTATATTGGTCAAGTGGCCAAAGACATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAAGTGAGGAAGCGCCTCGGAACAGGAATCTCCCCCACTTCGGTGGTGCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTTGTGGTCCGGATGACCAAGTCTCTGGCTGAACTTCAAAGGGTGA-GCCTGTCTCTCATGTGTAGATTACTGCCTAGATA--TG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114851439 289 + 124281992 GATACCTTGCTGTCTCTGAAAAGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGCATCAGCCGCGATGATTATATTGACCAAGTGGCCAAAGACATAGAAAACAAGGTGCCCAAAGTCTTTGACTTGGACCAGGTGAGGAAGCGCCTCGGAACGGGAATCTCCCCGACGTCGGTGGTGCTCCTGCAGGAGCTGGAGCGCTTCAACAGGCTTGTGGGCCGGATGAGCAAGTCTCTGGCTGAGCTTCAGAGGGTGA-GCCTGCCTCTCACGTGCAGATTACCACCTAGACA--GG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 493469 288 - 9212255 GATGCCTTGCTTTCTCTGAAAAGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGCATCAGCCGCGATGATTATATTGGCCAGGTGGCCAAAGACATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAGGTGAGGAAGCGCCTCGGAACGGGAATCTCCCCGACTTCGGTGGTGCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTTGCAGTCCGGATGAGCAAGTCTCTGGCTGAGCTTCAGAGGGTGA-GCCTACCTCTCTCGTGCAGATTACTGCCTA-ATA--GG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2912592 289 + 4466143 GATGCCTTGCTTTCTCTGAAAAGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGCATCAGCCGCGATGATTATATTGGCCAAGTGGCCAAAGACATAGAAAACAAGATGCCCAAAGTCTTCGACTTGGACCAGGTGAGGAAGCGCCTCGGAACGGGAATCTCCCCGACGTCGGTGGTGCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTTGTGGTCCGGATGAGCAAGTCTCTGGCTGAGCTTCAGAGGGTAA-GCCTGCCTCTCGCGTGCAGATTACCGCCTAGATA--GG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1615532 289 + 5364348 GATGCCTTGCTTTCCCTGAAAAGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGCATCAGCCGCGATGATTATATTGGCCAAGTGGCCAAAGACATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAGGTGAGGAAGCGCCTCGGAACGGGAATCTCCCCGACTTCGGTGGTGCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTTGTGGTCCGGATGAGCAAGTCTCTGGCCGAGCTTCAGAGGGTGA-GCCTGCCTCTCACGTGCAGATTACTGCCTAGACT--GG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9498016 288 - 31815103 GACGACTTGCTCTCTCTAAAAAGCGTCCT-GTTTCAGGGGAATCCAGCAGCGGCGTCAGCCGCGATGATTACATTGGCCAAGTGGCCAAGGACATAGAGAACAAGATGCCCAAGCTCTTCGACTTGGACCTGGTCAGGAAGCACCTGGGCGCCGTGATCTCGCCCACGTCCGTGGTGCTGCTGCAGGAGCTGGAGCGCTTCAACAAGCTCCTGAGGCGCATGACCAAGTCTCTGGCCGAGCTGCAGAGGGTGA-GCGTGATTCTGGCGTGCGGACGCCTGCCTCCGTGCG-- i micMur3.chr21 C 0 I 39 s proCoq1.NW_012154285v1 6751222 287 - 9870158 GATGCCTTGCTTTCTCTAAAACGTGTCCCGGTTTCAGGGGAATCCAGCAGTGGCGTCAGCCGCGATGATTACATTGGCCAAGTGGCCAAGGACATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAGGTCAAGAAGCACCTCGGCGCCGGGATCTCGCCCACGTCCGTGGTGCTGCTGCAGGAGCTGGAGCGCTTCAACAGGCTCGTGGGGCGGATGACCAGGTCTCTGGCCGAGCTGCAGAGGGTGA-GCGTGTTTCTAACGTGCAGATGACGGCACTGGTG---- i proCoq1.NW_012154285v1 I 138 C 0 s otoGar3.GL873618 4336911 287 + 7922563 GATGCCTTACTTACTCTAAAAAGTATCCGGGTTTTAGGGGAATCCAGCAGTGGCATCAGCCGTGATGATTACATTGGCCAAGTGGCCAAGGACATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAGGTCAGGAAGCACCTTGGCTTCGCAATCTCCCCCACGTCAGTAGTGCTCTTGCAGGAGCTGGAGCGCTTCAACAAGCTCGTGGTACGGATGACCAAATCTTTGGCTGAACTTCAAAGGGTGA-GTATATTTCTCTTGTGTAGGTTGCTGCTTCAGTG---- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124830291 283 + 151834684 -CAGTCTCAAAGTCCCTTAAAA-TGCCATCCTTCCAGGGGAGTCCAGCAGCGGCGTCAGCCGTGACGACTACATTGGCCAGGTTGCCAAAGACATTGAGAACAAGATGCCCAAGATCTTTGACCTGGACCAGGTTCGGAAGCACCTGGGCTTGAGCATCACACCCACCTCGGTGGTACTGCTACAGGAGCTGGGGCGCTTCAACAAGCTTGTCATTCGCATGACCAGGTCTCTGGCTGAGCTCCAGAGGGTGA-GCATG-CGCCCACGGGCTTGGCACTACATCACG----- i mm10.chr5 C 0 C 0 s canFam3.chr26 33185115 289 - 38964690 GATGCCATGCTTTTCCTAAAAAGTGTCCTGGTTTTAGGGGAATCCAGCAGTGGCATCAGCCGAGATGATTACATTGGCCACGTTGCCAAGGACATAGAAAACAAGATGCCTAAAGTCTTTGACTTGGACCAGGTCAGGAAGCACCTTGGGGTGGAAATCTCCCCCACGTCAGTGGTACTTCTGCAGGAGCTGGAACGCTTCAACAAGCTTGTTGTAAGGATGTCCAAGTCTCTGGCTGAACTTCAGAGGGTGA-GCATGCTCCTAATGTGCAGACCACGGCCTAGATG--CT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 873036 290 - 1116856 GATACTTTACCTTCTCTAAAAATTATCCTGGTTTTAGGCGAATCCAGCACTGGCATCAGCCGGGATGATTACATTGGCCAGGTGGCCAAGGACATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAGGTCAGGAGGAGCCTTGGAATGGGAATCTCCCCCACTTCAGTGGTGCTCTTACAGGAACTAGAACGCTTCAACAAGCTTGTGATACGGATGTCCAAGTCTCTGGTTGAACTTCAAAGGGTGAGGCATGTTTGTAAGGTGCAGATTACTGCCTAGCTG--TA i dasNov3.JH568189 C 0 C 0 a score=459138.000000 s hg38.chr12_KI270834v1_alt 105431 43 + 119498 TGGCACCTGGGGTTCTGATA-----GA-----------------GTCCTGCCCGATTGCTCTTGA s panTro5.chr12 127391052 43 + 137163284 TGGCACCTGGGGTTCTGATA-----GA-----------------GTCCTGCCCGATTGCTCTTGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125741345 43 + 135337776 TGGCACCTGGGGTTCTGACA-----GA-----------------GTCCTGCCCGATTGCTCTTGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8254896 43 - 8369578 TGGCACCTGGGGTTCTGATA-----GA-----------------GTCCTGCCCGATTGCTCTTGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97912997 43 + 106955855 TGGCACCTGGGGGTTTGATA-----GA-----------------GTCCTGCCTGACTGCTCTTGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124028062 42 + 133663169 TGGCACCTGGGGTTCTGATC-----GA-----------------GTCTTGCC-GATTGCTCTTGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128276256 42 + 137757926 TGGCACCTGGGGTTCTGATC-----GA-----------------GTCTTGCC-CATTGCTCTTGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10674776 42 - 16319837 TGGCACCTGGGGTTCTGATC-----GA-----------------GTCTTGCC-GATTGCTCTTGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12298707 42 + 20526591 TGGCACCTGGGGTTCTGATC-----GA-----------------GTCTTGCC-GATTGCTCTTGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119270080 42 + 128539186 TGGCACCTGGGGTTCTGATC-----GA-----------------GTCTTGCC-GATTGCTCTTGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 621620 42 + 6255621 TGGCACCTGGGGTTCTGATC-----GA-----------------GTCTTGCC-GATTGCTCTTGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4647953 42 - 8658521 TGGCGCCTGGGGTTCTGACA-----GC-----------------GTGCTGCT-GATTGCTCTTGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114851728 43 + 124281992 TAGCACCTGGGGCTCTCACC-----GA-----------------GTCTTGCCCGATTGCTCTCGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 493757 43 - 9212255 TAGCACCTGGGGTTCTCACT-----GA-----------------GTCTTGCCTGATTGCTCTTGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2912881 43 + 4466143 TAGCACCTGGGGTTCTCACC-----GA-----------------GTCTTGCCCGATTGCTCTTGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1615821 43 + 5364348 TAGCACCTGGGCTTCTCACT-----GA-----------------GTCTTGCCCGATCGCTCTTGA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6751509 43 - 9870158 TAGCGCCCGGGTTTCTGACC-----GA-----------------GTCTTGCCTGTTTGCCCTTGA i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4337198 42 + 7922563 TAGCACCT-GATTTCTGACA-----TA-----------------GTCTTGCCTATTTGCCCTTGA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124830574 46 + 151834684 -GAGAAGGGGGGTCCTAGCCCTCCACA-----------------GGCCTGCT-GAGTAGTCTCCA i mm10.chr5 C 0 I 2 s canFam3.chr26 33185404 39 - 38964690 --CTACCCACTTCTCTGATA------------------------GTCATGCCTGATTGCTCTCCA i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 873326 52 - 1116856 --------GTACTTTTTATA-----TACTTATTTTAAAAATATCATCTTGCTTGATTTCTCTTGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9498304 39 - 31815103 I a score=3507840.000000 s hg38.chr12_KI270834v1_alt 105474 180 + 119498 --TTCTAAATAGGCCTTGGCTGGAGAAGTTGGAATGAGCAATGAGTTAGATGATGTGGCCAGGTCTCTTTTTATCGGGCATATCCCTAATATCTGGAGAAGGCTTGCTCCTGACACCTTAAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGTTGTGGGT s panTro5.chr12 127391095 180 + 137163284 --TTCTAAATAGGCCTTGGCTGGAGAAGTTGGAATGAGCAATGAGTTAGATGATGTGGCCAGGTCTCTTTTTATCGGGCATATCCCTAATATCTGGAGAAGGCTTGCTCCTGACACCTTAAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGTTGTGGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125741388 180 + 135337776 --TTCTAAATAGGCCTTGGCTGGAGAAGTTGGAATGAGCAATGAGTTAGATGATGTGGCCAGGTCTCTTTTTATCGGGCATATCCCTAATATCTGGAGAAGGCTTGCTCCTGACACCTTAAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGTTGTGGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8254939 180 - 8369578 --TTCTAAATAGGCCTTGGCTGGAGAAGTTGGAATGAGCAATGAGTTAGATGATGTGGCCAGGTCTCTTTTTATCGGGCATATCCCTAATATCTGGAGAAGGCTTGCTCCTGACACCTTAAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGTTGTGGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97913040 180 + 106955855 --TTCTAAATAGGCCTTGGCTGGAGAAGTTGGAATGAGCAATGAGTTAGACGATGTGGCCAGGTCTCTTCTTATCGGGCATATCCCTAATATCTGGAGAAGGCTTGCTCCTGACACCTTAAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGTTGTGGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124028104 180 + 133663169 --TTCTAAATAGGCCTTAGCTGGAGAAGTTGGAATGAGCAATGAGTTAGACGATGTGGCCAGGTCTCTTTTTATCGGGCAGATCCCTAATATCTGGAGAAGGCTTGCTCCTGACACCTTAAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGTTGTGGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128276298 180 + 137757926 --TTCTAAATAGGCCTTAGCTGGAGAAGTTGGAATGAGCAATGAGTTAGACGATGTGGCCAGGTCTCTTTTTATCGGGCAGATCCCTAATATCTGGAGAAGGCTTGCTCCTGATACCTTAAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGTTGTGGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10674818 180 - 16319837 --TTCTAAATAGGCCTTAGCTGGAGAAGTTGGAATGAGCAATGAGTTAGACGATGTGGCCAGGTCTCTTTTTATCGGGCAGATCCCTAATATCTGGAGAAGGCTTGCTCCTGACACCTTAAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGTTGTGGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12298749 180 + 20526591 --TTCTAAATAGGCCTTAGCTGGAGAAGTTGGAATGAGCAATGAGTTAGACGATGTGGCCAGGTCTCTTTTTATCGGGCAGATCCCTAATATCTGGAGAAGGCTTGCTCCTGACACCTTAAAGTCTCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGTTGTGGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119270122 180 + 128539186 --TTCTAAATAGGCCTTAGCTGGAGAAGTTGGAATGAGCAATGAGTTAGACGATGTGGCCAGGTCTCTTTTTATCGGGCAGATCCCTAATATCTGGAGAAGGCTTGCTCCTGACACCTTAAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGTTGTGGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 621662 180 + 6255621 --TTCTAAATAGGCCTTAGCTGGAGAAGTTGGAATGAGCAATGAGTTAGACGATGTGGCCAGGTCTCTTTTTATCGGGCAGATCCCTAATATCTGGAGAAGGCTTGCTCCCGACACCTTAAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTATATGTTGTGGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4647995 180 - 8658521 --TTCTAAATAGGCCTTAGCTGGAGAAGTTGGAATGAGCAATGAGTTAGACGATGTGGCCAGGTCTCTTTTTATCGGGCATATCCCTAATATCTGGAGAAGGCTTGCTCCTGACACCTTAAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGTTGTGGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114851771 180 + 124281992 --TTCTTAACAGGCCTTGGCTGGAGAAGTTGGAATGAGCAGTGAGTTAGACGATGTGGCCAGGTCTCTTTTTCTCGGGAATATCCCTAATATCTGGAGAAAGCTTGCTCCTGACACGTTGAAGTCCCTTGGAAACTGGATGATCTACTTCCTGCGGCGGTTCAGCCAGTACATGTTGTGGGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 493800 180 - 9212255 --TTCTAAACAGGCCTTGGCTGGAGAAGTTGGAATGAGCAATGAGTTAGACGATGTGGCCAGGTCTCTTTTTCTCGGGAATATCCCTAATATCTGGAGGAAGCTTGCTCCTGACACGTTGAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGCTGTGGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2912924 180 + 4466143 --TTGTAAACAGGCCTTGGCTGGAGAAGTTGGAATGAGCAATGAGTTAGATGATGTGGCCAGGTCTCTTTTTCTCGGGAATATCCCTAATATCTGGAGAAAGCTTGCTCCTGACACGTTGAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGCTGTGGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1615864 180 + 5364348 --TTCTAAACAGGCCTTGGCTGGAGAAGTTGGAATGAGCAGTGAGTTGGACGATGTGGCCAGGTCTCTTTCTCTCGGGAATATCCCTAATATCTGGAGAAAGCTTGCTCCTGACACGTTGAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGTTGTGGGT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9498343 180 - 31815103 --TCCCCCGTAGGCCTTGGCTGGAGAAGTTGGAATGAGCAGTGAGTTGGATGATGTGGCCAGGGCTCTCTTTATTGGGAGTATCCCTAACATCTGGAGAAAGCTGGCCCCCGACACCTTGAAGACCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACACGCTGTGGGT i micMur3.chr21 I 39 I 1351 s proCoq1.NW_012154285v1 6751552 180 - 9870158 --TGTTAAATAGGCCTTGGCTGGAGAAGTTGGGATGAGCAGCGAGTTAGATGATGTGGCCAGGTCTCTTCTGATTGGGAGTATCCCTAGTATCTGGAGAAAGCTTGCCCCTGACACCTTAAAGTCCCTTGGAAACTGGATCGTCTACTTCCTGCGGCGGTTCAGCCAGTACACGCTGTGGGT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4337240 180 + 7922563 --TTCTAAATAGGCCTTGGCTGGAGAGGTTGGAATGAGCAGTGAGTTAGATGATGTGGCCAGGTCTCTTTTTATTGGGAATATCCCTAATATCTGGAGAAAGCTTGCCCCTGACACCTTAAAGTCCCTTGGAAACTGGATGGTCTACTTCCTACGACGGTTTAGCCAGTACACGCTGTGGGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124830622 180 + 151834684 --CTGCCCCCAGGCCTTGGCTGGGGAAGTCGGAATGAGCAATGAGTTAGATGATGTAGCCAGGTCTCTCTTCCTTGGGCACATCCCTCACATCTGGAGGAAGCTTGCCCCCGACACCCTGAAGACCCTTGGAAACTGGATGGTCTACTTCCTGAGGCGGTTCAGCCAGTACACACTGTGGGT i mm10.chr5 I 2 C 0 s canFam3.chr26 33185445 180 - 38964690 --CTGTGCACAGGCCTTGGCTGGAGAAGTTGGAATGAGCAACGAGTTAGATGATGTAGCCAGGTCTCTTTTCCTCGGGCAAATCCCTAGTATCTGGAGAAAGCTTGCCCCTGACACGTTGAAGTCCCTGGGAAACTGGATGCCTTACTTCCTGCGGCGGTTCAGCCAGTACACATTGTGGGT i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 873378 182 - 1116856 CTCTGTAAACAGGCCTTGGCTGGAGAAGTTGGAATGAGCAGTGAGTTAGATGATGTAGCCAAGTCTCTTTTTGTGGGGCACATCCCTAATATCTGGAGAAAGCTTGCCCCTGACACCTTAAAGACTCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACACATCCTGGGT i dasNov3.JH568189 C 0 C 0 a score=61216.000000 s hg38.chr12_KI270834v1_alt 105654 5 + 119498 AAGTG s panTro5.chr12 127391275 5 + 137163284 AAGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125741568 5 + 135337776 AAGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8255119 5 - 8369578 AAGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97913220 5 + 106955855 AAGTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124028284 5 + 133663169 AAGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128276478 5 + 137757926 AAGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10674998 5 - 16319837 AAGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12298929 5 + 20526591 AAGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119270302 5 + 128539186 AAGAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 621842 5 + 6255621 AAGAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4648175 5 - 8658521 AAGAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114851951 5 + 124281992 AGGTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 493980 5 - 9212255 AAGTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2913104 5 + 4466143 AAGTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1616044 5 + 5364348 AAGTG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6751732 5 - 9870158 GAGTG i proCoq1.NW_012154285v1 C 0 I 701 s otoGar3.GL873618 4337420 5 + 7922563 GAGTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124830802 5 + 151834684 GAGTG i mm10.chr5 C 0 C 0 s canFam3.chr26 33185625 5 - 38964690 AAGTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 873560 5 - 1116856 AAGTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9498523 1351 - 31815103 I a score=1899623.000000 s hg38.chr12_KI270834v1_alt 105659 182 + 119498 GCACGTCACCGCCTC--CTC----TCTGCCGATTCAGGTGTCAGCCTAGAC-T-CCTCAAACCACctcccaatcccctctttccattgcccagcag-----taacctctgttaa-agtttattgggtgctctggaaatggtctgagattct-tacaagcctatctgtatcttttgtttttcc-------ttttcttttgaagac s panTro5.chr12 127391280 182 + 137163284 GCACGTCACCGCCTC--CTC----TCTGCCGATTCAGGTGTCAGCCTAGAC-T-CCTCAAACCACctcccaatcccctctttccattgcccagcag-----taacctctgttaa-agtttattgggtgctctggaaatggtctgagattct-tacaagcctatctgtatcttttgtttttcc-------ttttcttttgaagac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125741573 182 + 135337776 GCACGTCACCGCCTC--CTC----TCTGCCGATTCAGGTGTCAGCCTAGAC-T-CCTCAAACCACctcccaatcccctctttccattgcccagcag-----taacctctgttaa-agtttattgggtgctctggaaatggtctgagattct-tacaagcctatctgtatcttttgtttttcc-------ttttcttttgaagac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8255124 182 - 8369578 GCACGTCACCGCCTC--CTC----TCTGCCGATTCAGGTGTCAGCCTAGAC-T-CCTCAAACCACctcccaatcccctctttccattgcccagcag-----taacctctgttaa-agtttattgggtgctctggaaatggtctgagattct-tacaagcctatccgtatcttttgtttttcc-------ttttcttttgaagac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97913225 189 + 106955855 GCACGTCACTACCTC--CTC----TCTGCCGATTCAGGTGTCAACCTagactt-cctcaaaccacctcccaattccctctttccatttcccagcag-----taacctctgttaa-agtttattgggtgctctggaaatggtctgagattct-tacaagcatatctgtatc-ttcgtttttccttttcttttttcttttgaagac i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124028289 194 + 133663169 GCACGTTACTACCTC--CTCTCTGTCTGCCGATTCAAGTGTCAACCTagactc-cctcaaaccacctcccaagcccctctttccatgtctcagcag-----taacctctgttag-agtttactgggtgctctggaaatggtctgagattct-tacaagcatatctgtatcttccgtttttccttttcttttttcttttgaagac i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128276483 194 + 137757926 GCACGTTACTACCTC--CTCTCTGTCTGCCGATTCAAGTGTCAACCTagactc-cctcaaaccacctcccaagcccctctttccatgtcccagcag-----taacctctgttag-agtttactgggtgctctggaaatggtctgagattct-tacaagcatatctgtatcttccgtttttccttttcttttttcttttgaagac i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10675003 194 - 16319837 GCACGTTACTACCTC--CTCTCTGTCTGCCGATTCAAGTGTCAACCTagactc-cctcaaaccacctcccaagcccctctttccatgtcccagcag-----taacctctgttag-agtttactgggtgctctggaaatggtctgagattct-tacaagcatatctgtatcttccgtttttccttttcttttttcttttgaagac i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12298934 194 + 20526591 GCACGTTACTACCTC--CTCTCTGTCTGCCGATTCAAGTGTCAACCTagactc-cctcaaaccacctcccaagcccctctttccatgtcccagcag-----taacctctgttag-agtttactgggtgctctggaaatggtctgagattct-tacaagcatatctgtatcttcagtttttccttttcttttttcttttgaagac i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119270307 194 + 128539186 GCACGTCACTACCTC--CTTTCTGTCTGCCGATTCAAGTGTCAACCTagactc-cctcaaaccacctcccaaggacctctttccatgtcccagcag-----taacctctgttag-agtttactgggtgctctggaaatggtctgagattct-tacaagcatatctgtatcttccgtttttccttttcttttttcttttgaagac i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 621847 194 + 6255621 GCACGTTACTACCTC--CTCTCTGTCTGCCGATTCAAGTGTCAACCTagactc-cctcaaaccacctcgcaagcccctctttccatgtcccagcag-----taacctctgttag-agtttactgggtgctctggaaatggtctgagattct-tacaagcatatctgtatcttcagtttttccttttcttttttcttttgaagac i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4648180 194 - 8658521 GCACGTCACTACCTC--CTCTCTGTCTGCCGATTCAAGTGTCAACCTagactt-cctcaaaccacctcccaagcccctctttccatgtcccagcag-----taacctctgttaa-agtttactgggtgctctggaaatggtctgagattct-tacaggcgtatctgtatctttcgtttttccttttcttttttcttttgaagac i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114851956 164 + 124281992 GCACATCACTACCTC--CTC------------------TGTCAACCTAGACTT-CCTCAAACCACCTCCCAACCCC--CTTTCCATTCCCCAGCAG-----TAACCTCTGTT---AGTTTACTGGGTGCTCTGGGAATGGTCTGAGATTCT-TACAAGCatatctgtatcttttgtttttcc--------tttattttcaggac i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 493985 168 - 9212255 GCACATCACTACCT---CTC------------------TGTCAGCCTagactt-cctcaaaccacctcccagaccc--ctttccattccccagcag-----taacctctgttaa-agttgactgggtgctctgggaatggtctgagatgct-tacaagcatatctgtatc-tttgtttttccttt----ttttattttcaggac i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2913109 170 + 4466143 GCACATCACCACCTC--GTC------------------TGTCAACCTagactt-cctcagaccacctcccaatccc--ctttccattccccagcag-----tagcctctgttaa-agtttactgggtgctctgggaatggtctgagattct-tacaagcatatctgtatcttttgtttttccttt----ttttattttcgggac i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1616049 172 + 5364348 GCACATCACTACCTCTTCCC------------------TGTCAACCTagactt-cctcaaaccacctcccaatccc--ctttccattccccagcag-----taacctctggtaa-agtttactgggtgctctgggaatggtctgagattct-tacaagcatatctgtatcttttgtttttccttt----ttttattttcaggac i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4337425 184 + 7922563 ATGCAACACTATCTC---------TCTGCTG-------GGTCAACGTGGACTT-CCTCAAACCACCTCTCAACAACTTCTGCCCATTCCCCAGCAGAAGGATAAATTCTGTTAA-AATTTATTGGGTGCTCTAGAAATGTTCTTAGATTC--TATAAGTATATGTATATATTCCATTTTTCCttctcttttttgtttttaagac i otoGar3.GL873618 C 0 I 481 s mm10.chr5 124830807 144 + 151834684 ----------------------------------CGGGGGCCACTGTGGGTTTGTCTCTGGACACCTACCTGCACCTGTTTTCC------CAGCGT-----TGGC--CTGTGAA-TGTGTATTGGGTGTGCTGGGGATAGCCTCGGTGGCC-ACAGGGCCAGTCTGCG----CTGGTATGCCTTT----GTGACTCTTGGC--- i mm10.chr5 C 0 C 0 s canFam3.chr26 33185630 177 - 38964690 AGATGCAACAGTCTC--TTC-------ATTGGTTCAACGTTCAGCCTGGACCA-CCT--GACCACCTCC--AGCCCCTCTCTAACTG---CAGTGG-----TGCCTTCTGTTGGCAGTTGATTGGGTGTTTTAGAAATGGTCTTGGACTC--TACAGGCATATCTGTATCTTT--TTTGTCCTTTTCA-TTTTGTTTTCAAGAC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 873565 169 - 1116856 ATAGGCAGCAGTCTC-----------TGCAAGTTCAAGGGTCAGTCTGTACTC-CCTCAAACCACctcccaacccc--atccccactccccagtag-----taacctctgttaacagttcattggatattctagaaatagtctctgattctatactagcatttctgcatcttt----------------ttttttctctaagac i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9498523 1351 - 31815103 I e proCoq1.NW_012154285v1 6751737 701 - 9870158 I a score=576660.000000 s hg38.chr12_KI270834v1_alt 105841 53 + 119498 tttgaag---catactcttacat-a-cccgattattttatctaagtgtatatcttggc s panTro5.chr12 127391462 53 + 137163284 tttgaag---catactcttacat-a-cccgattattttatctaagtgtatatcttggc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125741755 53 + 135337776 tttgaag---catactcttacat-a-cgcgattattttatctaagtgtatatcttggc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8255306 53 - 8369578 tttgaag---catactcttacat-a-cccgattattttatctaagtgtatatcttggc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97913414 52 + 106955855 tttgaag---catacta-tacat-a-cctgattattttatctaagcgtatatcttggc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124028483 52 + 133663169 tctgaag---catacta-tgcat-a-cccgattattttatctaagcgtatatcttggc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128276677 52 + 137757926 tctgaag---catacta-tgcat-a-cccgattattttatctaagcgtatatcttggc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10675197 52 - 16319837 tctgaag---catacta-tgcat-a-cccgattattttatctaagcgtatatcttggc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12299128 52 + 20526591 tctgaag---catacta-tgcat-a-cccgattattttatctaagcgtatatcttggc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119270501 52 + 128539186 tctgaag---cgtacta-tgcat-a-cccgattattttatctaagcgtatatcttggc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 622041 52 + 6255621 tctgaag---catacta-tgcat-a-cccgattattttatctaagcgtatatcttggc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4648374 52 - 8658521 tctgaag---catacta-tgcat-a-cccgattattttatctaagcgggtatcttggc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114852120 52 + 124281992 ttcgaag---catattt-tacat-c-cctaactatgttatctcagcgtttatcttggc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 494153 52 - 9212255 tttgaag---catacta-cacac-a-cccgattatgttatctaagcgtttatctgggc i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2913279 51 + 4466143 tttgaag---cgtacta-tacac-a-cctgattatgttata-aagcgtttatcttggc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1616221 52 + 5364348 tttgaag---catactg-tacac-a-cctgattatgttatctaagcgtttatctcggc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4338090 55 + 7922563 tttgaggacccctgCTC-TATAT-A-CTTGATTATTTTGTCTAAGAGAATATCTTGGC i otoGar3.GL873618 I 481 C 0 s mm10.chr5 124830951 42 + 151834684 -----------TTGCTA-TGCTC-C-TATGATGATTTCTTCCAG--GTATATCTTGGC i mm10.chr5 C 0 C 0 s canFam3.chr26 33185807 53 - 38964690 TTTGAAG---CATATTA-TGCACAA-TCTGATTTATTCATCTTGGAGTCCATCTTGGC i canFam3.chr26 C 0 I 685 s dasNov3.JH568189 873734 53 - 1116856 ttggaag---catactg-tacac-atcttgatttatttatcaaagagtatattttggc i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9498523 1351 - 31815103 I e proCoq1.NW_012154285v1 6751737 701 - 9870158 I a score=299910.000000 s hg38.chr12_KI270834v1_alt 105894 30 + 119498 acttgttccatattagtacac----agctagctc s panTro5.chr12 127391515 30 + 137163284 acttgttccatattagtacac----agctagctc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125741808 30 + 135337776 acttgttccatattagtacac----agctagctc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8255359 30 - 8369578 acttgttccatattagtacac----agctagctc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97913466 26 + 106955855 acttgttccatattagtacac--------agctc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124028535 34 + 133663169 acttgttccatattagtacacagaaagcaagctc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128276729 34 + 137757926 acttgttccatattagtacacagaaagcaagctc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10675249 34 - 16319837 acttgttccatattagtacacagaaagcaagctc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12299180 34 + 20526591 acttgttccatattagtacacagaaagcaagctc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119270553 34 + 128539186 acttgttccatattagtacacagaaagcaagctc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 622093 34 + 6255621 acttgttccatattagtacacagaaagcaagctc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4648426 34 - 8658521 acttgttccatattagtacacagaaagcaagctc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114852172 34 + 124281992 gcttgttccatgttagaacacagaaagcgagctt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 494205 34 - 9212255 acttgttccgtattagtacatagaaagcgagctt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2913330 33 + 4466143 cctt-ctccatattagtacatagaaagcgagctc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1616273 34 + 5364348 acttactccatattagtacatagaaagcgagctt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4338145 33 + 7922563 A-TTGTTTCATACTAGGATATAGTGATCTAACTC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124830993 14 + 151834684 ATTTGTTCT--------------------AGCTT i mm10.chr5 C 0 C 0 s dasNov3.JH568189 873787 34 - 1116856 aactgttccatcttagcacattcaggtctacctt i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9498523 1351 - 31815103 I e proCoq1.NW_012154285v1 6751737 701 - 9870158 I e canFam3.chr26 33185860 685 - 38964690 I a score=134507.000000 s hg38.chr12_KI270834v1_alt 105924 10 + 119498 gttctttttt s panTro5.chr12 127391545 10 + 137163284 gttctttttt i panTro5.chr12 C 0 C 0 s panPan2.chr12 125741838 10 + 135337776 gttctttttt i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8255389 10 - 8369578 gttctttttt i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97913492 10 + 106955855 gttctttctt i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124028569 10 + 133663169 attctttttt i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128276763 10 + 137757926 attctttttt i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10675283 10 - 16319837 attctttttt i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12299214 10 + 20526591 gttctttttt i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119270587 10 + 128539186 gttctttttt i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 622127 10 + 6255621 gttctttttt i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4648460 10 - 8658521 gttctttttt i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114852206 10 + 124281992 gctccttttt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 494239 10 - 9212255 gttccttttt i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2913363 10 + 4466143 gttccttttt i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1616307 10 + 5364348 gttccttttt i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4338178 9 + 7922563 ATTC-TTTTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124831007 10 + 151834684 ATTCTTTTTT i mm10.chr5 C 0 C 0 s canFam3.chr26 33186545 10 - 38964690 gtctttttta i canFam3.chr26 I 685 C 0 s dasNov3.JH568189 873821 10 - 1116856 attctttttt i dasNov3.JH568189 C 0 I 2363 e micMur3.chr21 9498523 1351 - 31815103 I e proCoq1.NW_012154285v1 6751737 701 - 9870158 I a score=1302486.000000 s hg38.chr12_KI270834v1_alt 105934 141 + 119498 agagtatgccattgtacaaatgtttcatatcctttctcctccttctgtatcctaaaaatatggtaactgcctacatttcggtggttacc--a----tt--------tttttttttt------------------t-tttgctaatacaaataacattctggtgcacatgtatat s panTro5.chr12 127391555 139 + 137163284 agagtatgccattgtacaaatgtttcatatcctttctcctccttctgtatcctaaaaatatggtaactgcctacatttcggtggttacc--a--------------tttttttttt------------------t-tttgctaatacaaataacattctggtgcacatgtatat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125741848 139 + 135337776 agagtatgccattgtacaaatgtttcatatcctttctcctccttctgtatcctaaaaatatggtaactgcctacattttggtggttacc--a--------------tttttttttt------------------t-tttgctaatacaaataacattctggtgcacatgtatat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8255399 140 - 8369578 agagtatgccattgtacaaatgtttcatatcctttctcctccttctgtatcctaaaaatatggtagctgcctacatttcggtggttacc--a-----t--------tttttttttt------------------t-tttgctaatacaaataacattctggtgcacatgtatat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97913502 145 + 106955855 agagtatgccattgtacaaatgttccatatcctttctcctccttctgtatcctaaaaatatggtaactacctacattttggtggttacc--atatatt--------tttttttttt------------------t-tttgcgaatacaaataacattctgatgcacatgtctat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124028579 141 + 133663169 agagtatgccattgtacaaatgttccatatcctttctcttccttctgtatcctgaaaatatggtaactgtctacatttaggtggttacc--a----ta--------tatatatata------------------t-tttgctaatacgaataacattctggcgcacatgtctat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128276773 141 + 137757926 agagtatgccattgtacaaatgttccatatcctttctcttccttctgtatcctgaaaatatggtaactgtctacatttaggtggttacc--a----ta--------tatatatata------------------t-tttgctaatacgaataacattctggcgcacatgtctat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10675293 141 - 16319837 agagtatgccattgtacaaatgttccatatcctttctcttccttctgtatcctgaaaatatggtaactgtctacatttaggtggttacc--a----ta--------tatatatata------------------t-tttgctaatacgaataacattctggcgcacatgtctat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12299224 143 + 20526591 agagtatgccattgtacaaatgttccatatcctttctcttccttctgtatcctgaaaatatggtaactgtctacatttaggtggttaccata----ta--------tatatatata------------------t-tttgctaatacaaataacattctggcgcacatgtctat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119270597 159 + 128539186 agagtatgccattgtacaaatgttccatatcctttctcttccttctgtatcctgaaaatatggtaactgcctacatttaggtggttacc--a----ta--------tatatatatatatatatattttttttttt-tttgctaatacgaataacattctggcgcacatgtctat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 622137 145 + 6255621 agagtatgccattgtacaaatgttccatatcctttctcttccttctgtatcctgaaaatatggtaactgtctacatttaggtggttacc--a----ta--------tatatgtatatata--------------t-tttgctaatacaagtaacattctggcgcacatgtctat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4648470 142 - 8658521 agagtatgccattgtacaaatgttccatatcctttctcttccttctgtatcctgaaaatatggtaactgtctacatttaggtggttacc--a----ta--------tatatatatat-----------------t-tttgctaatacgaataacattctggcacacatgtctat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114852216 138 + 124281992 agagtatgccgttgcacagatgttccatatcctttctcctccttccgtatcctaaaaatatggtacccgcctacatttagggggttacc--g----ta-----------ttttttt------------------t-tctgctaatacaaataactttctggtgaacatgtctat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 494249 142 - 9212255 agagtatgccgttgcacaaatgttccatatcctttctcctccttccgtatcctaaaaatatggcaaccgcctacatttaggtggttacc--a----ta-------ttttttttttt------------------t-tttgctaatacaaataacattctggtgcacatgtctat i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2913373 140 + 4466143 agagtatgccattgcacaaatgttccacatcctttctcctccttctgtatcctaaaaatatggtaaccgcctacatttaggtggttacc--a----ta-------ttttttttttt------------------t-tttgctaatacaaataacattctggtgcac--gtctat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1616317 138 + 5364348 agagtgcgccattgcgcaaatgttccatatcctttctcctccttctgtagcctaaaaatatggtaaccgcctacatttaggtggttacc--a----ta---------tattttttt------------------t-tttgctaatacaaataacattctggtgcac--gtctat i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4338187 66 + 7922563 AGAGTAC--------------------------------------------------------------------------TGGTTACC--A----TA--------TATATATATA------------------TATTTGCTAAAACAAACaacattctggtgca--tgtctgt i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124831017 118 + 151834684 AGGGT-------------------------CTTTGTTCATCCTCCTATGGGTGGACATTCAGGTAATGAC---TATGTAACTGTGTGCC--A----CAAAGAGCACCATTGTTACT------------------G-TTCATTAATGCAGTCTGC---CTAGAACACACGTGCAT i mm10.chr5 C 0 I 119 s canFam3.chr26 33186555 118 - 38964690 aggggaccctgttttatagatgttccatgtcctttcccct------------------gatgg---------acatttaggtggttccg--t----tt----gggttttttttctt------------------c-ttagtcagtgtggacaacactctggcgcacgtgtcttt i canFam3.chr26 C 0 C 0 e micMur3.chr21 9498523 1351 - 31815103 I e proCoq1.NW_012154285v1 6751737 701 - 9870158 I e dasNov3.JH568189 873831 2363 - 1116856 I a score=846552.000000 s hg38.chr12_KI270834v1_alt 106075 77 + 119498 gaatatgcataggggtatattccatgggtaaattctgacagtggaagagttggatcaaagagcttgtgcattttaaa s panTro5.chr12 127391694 77 + 137163284 gaatatgcataggggtatattccatgggtaaattctgacagtggaagagttggatcaaagagcgtgtgcattttaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125741987 77 + 135337776 gaatatgcataggggtatattccatgggtaaattctgacagtggaagagttggatcaaagagcgtgtgcattttaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8255539 77 - 8369578 gaatatgcacaggggtatattccatgggtaaattctgacagtggaagagttggatcaaagagcgtgtgcattttaaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97913647 77 + 106955855 gaatatgcataggggtatattccatgggtaaattctgacagtggaagagttggatcaaagagcgtgtgcattttaaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124028720 77 + 133663169 gaatatgcataggggtgtattccacggataaattctgacagtggaagagttggatcaaagagcgtgtgcattttaaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128276914 77 + 137757926 gaatatgcataggggtgtattccacggataaattctgacagtggaagagttggatcaaagagcgtgtgcattttaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10675434 77 - 16319837 gaatatgcataggggtgtattccacggataaattctgacagtggaagagttggatcaaagagcgtgtgcattttaaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12299367 77 + 20526591 gaatatgcataggggtgtattccacggataaattctgacagtggaagagttggatcaaagagcgtgtgcattttaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119270756 77 + 128539186 gaatatgcataggggtgtattccacggataaattgtgacagtggaagagttggatcaaagagcgtgtgcattttaaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 622282 77 + 6255621 gaatatgcataggggtgtattccacggataaattctgacagtggaagagttggatcaaagagcgtgtgcattttaaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4648612 77 - 8658521 gaatatgcataggggtgtattccacggataaattctgacagtggaagagttggatcaaagagtgtgtgcattttaaa i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114852354 75 + 124281992 gaatatgcataggggtgtattccatgggtaaattctggcagtggaa-agttggatcaaggagcgtgtgca-tgtaaa i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 494391 75 - 9212255 gaatatgcata-gggtgtactccatgggtaaactctggcagtggaagagttggatctaagagcgtgtgcg-tgtaaa i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2913513 76 + 4466143 gaatatgcataggggtgaattccatgggtaaattctggcaggggaagagctggatcaaagagcgtgtgca-tgtaaa i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1616455 75 + 5364348 gaatatgcatg-gggtgtattccatgggtaaattctggcagtggaagagttggatcaaagagcgtgtgca-tgtaaa i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4338253 73 + 7922563 gaatacaggtatgagtatattctatgagtaaattccaataatgc---agttggatcaaagagtgtataca-tttaac i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33186673 75 - 38964690 gcattctcacatgagtctatttcacgggtaaatccctacaacagcagagttgggtcccaggg--tgtgcactttgca i canFam3.chr26 C 0 C 0 e micMur3.chr21 9498523 1351 - 31815103 I e mm10.chr5 124831135 119 + 151834684 I e proCoq1.NW_012154285v1 6751737 701 - 9870158 I e dasNov3.JH568189 873831 2363 - 1116856 I a score=128893.000000 s hg38.chr12_KI270834v1_alt 106152 10 + 119498 ttttgatagc s panTro5.chr12 127391771 10 + 137163284 ttttgatagc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125742064 10 + 135337776 ttttgatagc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8255616 10 - 8369578 ttttgatagc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97913724 10 + 106955855 ttttgatagc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124028797 10 + 133663169 ttttgatagc i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128276991 10 + 137757926 ttttgatagc i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10675511 10 - 16319837 ttttgatagc i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12299444 10 + 20526591 ttttgatagc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119270833 10 + 128539186 ttttgatagc i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 622359 10 + 6255621 ttttgatagc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4648689 10 - 8658521 ttttgatagc i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114852429 10 + 124281992 ctccgctagc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 494466 10 - 9212255 ttctgctagC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2913589 10 + 4466143 ttctgctagc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1616530 10 + 5364348 ttctgctagc i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4338326 10 + 7922563 ttttgacagg i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33186748 10 - 38964690 ttctgatagc i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 876194 10 - 1116856 ttttgatagc i dasNov3.JH568189 I 2363 C 0 e micMur3.chr21 9498523 1351 - 31815103 I e mm10.chr5 124831135 119 + 151834684 I e proCoq1.NW_012154285v1 6751737 701 - 9870158 I a score=120025.000000 s hg38.chr12_KI270834v1_alt 106162 11 + 119498 tcttgttggat s panTro5.chr12 127391781 11 + 137163284 tcttgttggat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125742074 11 + 135337776 tcttgttggat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8255626 11 - 8369578 tcttgttggat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97913734 11 + 106955855 tcttgttggat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124028807 11 + 133663169 tcttgttggct i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128277001 11 + 137757926 tcttgttggct i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10675521 11 - 16319837 tcttgttggct i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12299454 11 + 20526591 tcttgttggct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119270843 11 + 128539186 tcttgttggat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 622369 11 + 6255621 tcttgttggct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4648699 11 - 8658521 tcttgttggat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114852439 11 + 124281992 gcttgttggat i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 494476 11 - 9212255 GCTTGTTGGAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2913599 11 + 4466143 gcttgttggat i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1616540 11 + 5364348 gcttgttggat i aotNan1.NW_018491581v1 C 0 I 50 s otoGar3.GL873618 4338336 11 + 7922563 tcctctcagat i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124831254 11 + 151834684 tcttgtctgTG i mm10.chr5 I 119 C 0 s canFam3.chr26 33186758 11 - 38964690 tcttgtcagat i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 876204 7 - 1116856 tcttgac---- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9498523 1351 - 31815103 I e proCoq1.NW_012154285v1 6751737 701 - 9870158 I a score=501342.000000 s hg38.chr12_KI270834v1_alt 106173 77 + 119498 -ggttcttggaaaggctgaaa---ccacagtctatgagagtgcttctttcctcactccgctgcaa-tgctg-----------------------------------------------------------------------cg--ttcttaaca s panTro5.chr12 127391792 77 + 137163284 -ggttcttggaaaggctgaaa---ccacaatctatgagagtgcttctttcctcactccgctgcaa-tgctg-----------------------------------------------------------------------cg--ttcttaaca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125742085 77 + 135337776 -ggttcttggaaaggctgaaa---ccacagtctacgagagtgcttctttcctcactccgctgcaa-tgctg-----------------------------------------------------------------------cg--ttcttaaca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8255637 77 - 8369578 -ggttcttggaaaggctgaaa---ccacagtctatgagagtgcttctttcctcactctgctgcaa-tgctg-----------------------------------------------------------------------ca--ttcttaaca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97913745 77 + 106955855 -ggttcttagaaaggctgaaa---gcacagtctatgagagtgcttctttcctcaccccgctgcaa-cgctg-----------------------------------------------------------------------cg--ttcttaaca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124028818 73 + 133663169 -ggttcttagaaaggctgaaa---ccacagtgtatga----gcttctttcctcacccctctgcaa-cactg-----------------------------------------------------------------------tg--ttcttaaca i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128277012 73 + 137757926 -ggttcttagaaaggctgaaa---ccacagtgtatga----gcttctttcctcacccctctgcaa-cactg-----------------------------------------------------------------------tg--ttcttaaca i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10675532 77 - 16319837 -ggttcttagaaaggctgaaa---ccacagtgtacgagcgtgcttctttcctcacccctctgcaa-cactg-----------------------------------------------------------------------tg--ttcttaaca i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12299465 77 + 20526591 -ggttcttagaaaggctgaaa---ccacagtctatgagcgtgcttctttcctcacccctctgcaa-cactg-----------------------------------------------------------------------tg--ttcttaaca i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119270854 77 + 128539186 -ggttcttagaaaggctgaaa---ccacagtctatgagagtgcttctttcctcacccctctgcaa-cactg-----------------------------------------------------------------------tg--ttcttaaca i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 622380 77 + 6255621 -ggttcttagaaaggctgaaa---ccacagtctacgagcgtgcttctttcctcacccctctgcaa-cactg-----------------------------------------------------------------------tg--ttcttaaca i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4648710 75 - 8658521 -ggttcttagaaaggctgaaa---ccacagtctatgagagtgcttctttcctca--cctctgcaa-cactg-----------------------------------------------------------------------ta--ttcttaaca i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114852450 63 + 124281992 ----tGTTAGAAA-----------AGACAGTGTGTGA--GTGTTTATTTCCTCACTGCTCTGCAG-CACTG-----------------------------------------------------------------------CG--Tacctaac- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 494487 63 - 9212255 ----TGTTAGAAA-----------AGAcagcgtatga--gtgtttatttcctcaccgctccacaa-cactg-----------------------------------------------------------------------cg--tacctaac- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2913610 64 + 4466143 ----tgttagaaag----------acacagcgtatga--gtgtttatttcctcaccgctctgcaa-cactg-----------------------------------------------------------------------cg--tacctaac- i cebCap1.NW_016107484v1 C 0 C 0 s otoGar3.GL873618 4338348 148 + 7922563 -gttctttagaagagtccaaa---tctccatatatgattaggattcttttctcacccctctacaa-cactgtatAttctttttttttgagatacagtctcactttgtcactctcggtagagtgctgtggtgtcacatctgtata--ttcttaata i otoGar3.GL873618 I 1 C 0 s mm10.chr5 124831265 71 + 151834684 -AGTATTCTGGAAAGTTGAAGATTTAATACTCTGGGATCACACTTG-TTCTTCAAATCTTTGTGATCTTTG-----------------------------------------------------------------------AG----------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33186770 78 - 38964690 -gtcttctcgacaagtggaaa---ccacagtgaacaaatacgattatttcctt-cctctctgccg-cactg---------------------------------------------------gc------------------tg--ttcttaaaa i canFam3.chr26 I 1 I 2 s dasNov3.JH568189 876211 70 - 1116856 agttctctagagaaggtgaaa---tcacaatgtgta----------tttcctcacatctctataa-tactg-----------------------------------------------------------------------tgtatccttacta i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9498523 1351 - 31815103 I e proCoq1.NW_012154285v1 6751737 701 - 9870158 I e aotNan1.NW_018491581v1 1616551 50 + 5364348 I a score=93363.000000 s hg38.chr12_KI270834v1_alt 106250 8 + 119498 ttttggat s panTro5.chr12 127391869 8 + 137163284 ttttggat i panTro5.chr12 C 0 C 0 s panPan2.chr12 125742162 8 + 135337776 ttttggat i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8255714 8 - 8369578 ttttggat i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97913822 8 + 106955855 ttttggat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124028891 8 + 133663169 ttttggat i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128277085 8 + 137757926 ttttggat i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10675609 8 - 16319837 ttttggat i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12299542 8 + 20526591 tttgggat i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119270931 8 + 128539186 ttttggat i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 622457 8 + 6255621 ttttggat i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4648785 8 - 8658521 ttttggat i colAng1.NW_012116043v1 C 0 C 0 s proCoq1.NW_012154285v1 6752438 8 - 9870158 ttttggat i proCoq1.NW_012154285v1 I 701 C 0 s otoGar3.GL873618 4338496 8 + 7922563 ttttggat i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124831336 8 + 151834684 TTTGGGGT i mm10.chr5 C 0 C 0 s canFam3.chr26 33186850 8 - 38964690 ttttggat i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 876281 8 - 1116856 ttttggat i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9498523 1351 - 31815103 I e aotNan1.NW_018491581v1 1616551 50 + 5364348 I e cebCap1.NW_016107484v1 2913674 0 + 4466143 C e saiBol1.JH378194 494550 0 - 9212255 C e calJac3.chr9 114852513 0 + 124281992 C a score=1961594.000000 s hg38.chr12_KI270834v1_alt 106258 180 + 119498 cactgtctccctgataggtgaaa-ataatatctcat------------------t-gt-----tttgcatgtctttaattatggtgagtctgagcgtattttgcatgctttacagacattttgtgtttg-tttttctgtgaattgtcctttt-gtatctggatttcatttttagt-gaggtctccatctttct-cattgatgtttaaga- s panTro5.chr12 127391877 176 + 137163284 cactgtctccctgataggtgaaa-ataatatctcat------------------t-gt-----tttgcatgtctttaattatggtgagtctgagagtatttcgcatgctttacagacattttg----tg-tttttctgtgaattgtcctttt-gtatctggatttcatttttagt-gaggcctccatctttct-cactgatgtttaaga- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125742170 176 + 135337776 cactgtctccctgataggtgaaa-ataatatctcat------------------t-gt-----tttgcatgtctttaattatggtgagtctgagcgtatttcgcatgctttacagacattttg----tg-tttttctgtgaattgtcctttt-gtatctggatttcatttttagt-gaggtctccatctttct-cactgatgtttaaga- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8255722 180 - 8369578 cactgtctccctgataggtgaaa-ataatatctcat------------------t-gt-----tttgcatgtctttaattatggtgagtctgagtgtatttcgcatgctttacagacattttgtgtttg-tttttctgtgaattgtcctttt-gtatctggatttcatttttagt-gaggtctccatctttct-cactgatgtttaaga- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97913830 180 + 106955855 cactgtctccctgagaggtaaaa-ataatatctcat------------------t-gt-----tttgcgcgtctttaattatggtgagtctgagcgtattttgcatgctttacagacattttgtgtttg-tttttctatgaattgtcttttt-gtatctggatttcatttttagt-gaggtctccatctttct-cactgatgtttaaga- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124028899 185 + 133663169 ccctgtctccctgataggtgaaa-ataagatctcat------------------t-gttttgctttgcatttctttaattatggtgagcctgagtgtatttcgcatgctttacagatatttcgtgttggctttttctgtgaattgtcctttt-gtatctggatttcatttttagt-aaggtctccatc-gttt-cactgatggttaaga- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128277093 185 + 137757926 ccctgtctccctgataggtgaaa-ataagatctcat------------------t-gttttgctttgcatttctttaattatggtgagcctgagtgtatttcgcatgctttacagatatttcgtgttggctttttctgtgaattgtcctttt-gtatctggatttcatttttagt-aaggtctccatc-gttt-cactgatggttaaga- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10675617 185 - 16319837 ccctgtctccctgataggtgaaa-ataagatctcat------------------t-gttttgctttgcatttctttaattatggtgagcctgagtgtatttcgcatgctttacagatatttcgtgttggctttttctgtgaattgtcctttt-gtatctggatttcatttttagt-aaggtctccatc-gttt-cactgatggttaaga- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12299550 185 + 20526591 ccctgtctccctgataggtgaaa-ataagatctcat------------------t-gttttgctttgcatgtctttaattatggtgagcctgagtgtatttcgcctactttacagatatttcgtgttggctttttctgtgaattgtcctttt-gtatctggatttcatttttagt-aaggtctccatc-gtct-cactgatggttaaga- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119270939 186 + 128539186 cactgtctccctgataggtgaaa-ataagatctcat------------------t-gttttgctttgcatgtctttaattatggtgagcctgagtgtatttcgcatgctttacagatatttcgtgttggcttcttctgtgaattgtcttttt-ggatctggatttcatttttagt-aaggtctccatctttct-cactgatgtttaaga- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 622465 185 + 6255621 ccctgtctccctgataggtgaaa-ataagatctcat------------------t-gttttgctttgcatgtctttaattatggtgagcctgagtgtacttcgcatactttacagatatttcgtgttggctttttctgtgaattgtcctttt-gtatctggatttcatttttagt-aaggtctccatc-gtct-cactgatggttaaga- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4648793 186 - 8658521 cactgtctccctgataggtgaaa-ataagatctcat------------------t-gttttgctttgcatgtctttaattatggtgagcctgagtgtatttcgcatgctttacagatactttgtgttggctttttctgtgaattgtcttttt-gtatctggatttcatttttagt-aaggtctccatctttct-cactgatgtttaaga- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114852513 162 + 124281992 ---------------aggtggaa-atcatagctcac------------------t-gtttcgctttg-atgtct--aattatgctgggtcagagcgtctttcacat-cctcacagacattttgtgtttc-tttttctgtgaactgtcttttt-gtatctggatttaatttgtagt-gaggtctcc----tttt-cattgatgtttaaga- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 494550 162 - 9212255 ---------------aggtgaaa-atcacagctcat------------------t-gttttgcttcgcaaggct----ttatgctgggtctgaacgtatttcacatgctttacagacattttgtgtttc-tttttctgtgaactgtcttttt-gtatctggatttaatttttagt-gaggtctcc----tttt-cattgatgtttaaga- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2913674 166 + 4466143 ---------------aggtgaaa-atcatagctcat------------------t-gttttgctttgcatgtttttaattatgctgggtctgagcgtatttcacatgctttacagacattttgtgtttc-tttttctgtgaactgtcttttt-gtatctggatttaatttttagt-gaggtctcc----tttt-cattgatgtttaaga- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1616601 181 + 5364348 cactgtgtacctaacaggtgaaa-atcgtagctcat------------------t-gttttgctttgcatgtctttaattatgctggatctgagcgtatttcacatgctttacagacattttgtgtttc-tttttctgtgaactgtcttttt-gtatctggatttaatttttagt-gaggtctcc----tttt-cattgaagtttaaga- i aotNan1.NW_018491581v1 I 50 C 0 s proCoq1.NW_012154285v1 6752446 179 - 9870158 cattgcctccctgataggtgaaagatggtatctcac------------------t-gtgttgctttgcatttttttaattatggggaggctgagtgtacttcacatgctt-----atgttttg--tttc-ttttcctgtgaattgtcttttc-atatctcaatttcatttttatg-gaggtcgccatcttttc-cattcatgttcgaga- i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4338504 158 + 7922563 cgctgtctccctgatgggtga---atagtatctcat------------------t-gttttgctttgca-ttctgtaatta--------ctgagtgtatttcacatgctt-----acat------tttc-tttttctgtgaatta--ttttc-atacctcaatttcatttttat----tgtctccatcttttt-cattgatgtttagga- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124831344 173 + 151834684 CTCTGCTT---------GCTaat-ggaacatctaat------------------tggttttgtcctgtgtctctttaatgaaggtgaagtggggggtgttttatatactt-aaaggcattttga------attttctgtgaaccgtcatcat-tcatgtctgttttccttttggtagaagactccatctttttacattgatttTTTAAA- i mm10.chr5 C 0 I 729 s canFam3.chr26 33186858 194 - 38964690 -cttttctccctgataggtaaatcataatatgttatgataggtaaataatactat-gtttgggtgtgcatttctttaattatgttgaggcagagcatatcttacatacac-gtagataccttc-------ttttcccgtgaa---tcttttt-gtgtcttgatttcctttttatc-cagttctctatctttttaaactgatcttttaga- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 876289 175 - 1116856 --ctttgcctctgatcgatgaaa-agtgg---cctc------------------t-gttttgatttgcatatccttaattatgatgaggccaagtgtattttctttgctt-atagatattttgtatcct-tttttctgtgaattgtctttttcatatcctgtgttcattttttta------cttcatc-tttt-tattgattttttgaaa i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9498523 1351 - 31815103 I a score=2592768.000000 s hg38.chr12_KI270834v1_alt 106438 209 + 119498 gctctttgcaaatcaaagaaattagcccttggtctgccagtgttgcaggtatttctccaagcttgtcataagtc--ttgactttgcttacggta-ttttttccacagaaaagctttacatttttccgtagtcaaacctacaag--gcttttctttttta-----tcctgggctttgtatttcctactccacga-t-atgaaagcattcattggagatgtgg s panTro5.chr12 127392053 209 + 137163284 gctctttgcaaatcaaagaaattagCCCTTGGTCTGCCAGTGTTGCAGATATTTCTCCAAGCTTGTCATAAGTC--TTGACTTTGCTTACGGTA-TTTTTTCCACAGAAAAGCTTTACATTTTTCCGTAGTCAAACCTACAAG--GCTTTTCTTTTTTA-----TCCTGGGCTTTGTATTTCCTACTCCACGA-T-ATGAAAGCATTCATTGGAGATGTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125742346 209 + 135337776 gctctttgcaaatcaaagaaattagCCCTTGGTCTGCCAGTGTTGCAGATATTTCTCCAAGCTTGTCATAAGTC--TTGACTTTGCTTACGGTA-TTTTTTCCACAGAAAAGCTTTACATTTTTCCATAGTCAAACCTACAAG--GCTTTTCTTTTTTA-----TCCTGGGCTTTGTATTTCCTACTCCACGA-T-ATGAAAGCATTCATTGGAGATGTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8255902 209 - 8369578 gctctttgcaaatcaaagaaattagCCCTTGGTCTGCCAGTGTTGCAGGTATTTCTCCAAGCTTGTCGTAAGTC--TTGACTTTGCTTACGGTA-TTTTTTCCACAGAAAAGCTTTACATTTTTCCGTAGTCAAACCTACAAG--GCTTTTCTTTTTTA-----TCCTGGGCTTTGTATTTCCTACTCCACGA-T-ATGAAAGCATTCATTGGAGATGTGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97914010 205 + 106955855 gctctttGCAAATC-----Aattagcccttggtctgccagtgttgcagatatttctcccagcttgtcataagtc--ttgactttgcttacagtatttttttccacagaaaagctttacatttctccgtagtcaaacctacaag--gcttttttttttta-----tcctgggctttgcatttcctactccacga-t-atgaaagcattcattagagatgtgg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124029084 197 + 133663169 gctctttgcaaatcaaagaaattagCCCTTGGTCTG-------------TATTTCTCCCAGCTTGTCATAAGTC--TTGACTTTGCTTACATTATTTTTTTCCACAGAAAAGCTTTACATTTTTACGTAGTCAAACCTATAAG--GCTTTTCTTTGTTA-----TCCTGGGCTTTGTATTTCCTACTCCATGA-T-ATGAAAGCATTCACTGGGGATGTGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128277278 196 + 137757926 gctctttgcaaatcaaagaaattagCCCTTGGTCTG-------------TATTTCTCCCAGCTTGTCATAAGTC--TTGACTTTGCTTACATTA-TTTTTTCCGCAGAAAAGCTTTACATTTTTACGTAGTCAAACCTATAAG--GCTTTTCTTTGTTA-----TCCTGGGCTTTGTATTTCCTACACCATGA-T-ATGAAAGCATTCACTGGGGATGTGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10675802 196 - 16319837 gctctttgcaaatcaaagaaattagCCCTTGGTCTG-------------TATTTCTCCCAGCTTGTCATAAGTC--TTGACTTTGCTTACATTA-TTTTTTCCGCAGAAAAGCTTTACATTTTTACGTAGTCAAACCTATAAG--GCTTTTCTTTGTTA-----TCCTGGGCTTTGTATTTCCTACTCCATGA-T-ATGAAAGCATTCACTGGGGATGTGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12299735 196 + 20526591 gctctttgcaaatcaaagaaattagCCCTTGGTCTG-------------TATTTCTCCCAGCTTGTCGTAAGTC--TTGACTTGGCTTACATTA-TTTTTTCCGCAGAAAAGCTTCACATTTTCACGTAGTCAAACCTATAAG--GCTTTTCTTTGTTA-----TCCTGGGCTTTGTATTTCCTACTCCATGA-T-ATGAAAGCATTCACTGGGGATGTGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119271125 208 + 128539186 gctctttgcaaatcaaagaaattagcccttggtctgct-gtgttgcagatatttctcccagcttgtcataagtc--ttgactttgcttacatta-ttttttccacagaaaagctttacacttttatgtagtcaaacctacaag--gcttttctttGTTA-----TCCTGGGCTTCGTATTTCCTACTCCATTA-T-ATGAAAGCATTCACTGGGGATGTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 622650 196 + 6255621 gctctttgcaaatcaaagaaattagCCCTTGGTCTG-------------TATTTGTCCCAGCTTGTCGTAAGTC--TTGACTTTGCTTACATTA-TTTTTTCCGCAGAAAAGCTTTACATTTTTACGTGGTCAAACCTATAAG--GCTTTTCTTTGTTA-----TCCTGGGCTTTGTATTTCCTACTCCATGA-T-ATGAAAGCATTCACTGGGGATGTGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4648979 208 - 8658521 gctcgttgcaaatcaaagaaattagcccttggtctgct-gtgttgcagatatttctcccagcttgtcataagtc--ttgactttgcttatgtta-ttttttccacagaaaagctttacatttttacgcagtcaaacctacaag--gcttttctttgttA-----TCCTGGGCTTTGTATTTCCTACTCCATGA-T-ATGAAAGCATTCATTGGAGATGTGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114852675 207 + 124281992 gctctttgcatatcaaagaaattCGCCTTTGGTCTGCCAGTGCTGCGGACGTTTTCCCCAGCCTGTC-TAAGCC--TTGGCTTTGCTTACAGTA-TTTTTTCCTTAGAAAAGTTTTACATTTTTATGTCGTCAAACCTGCAAG--GCTTTTCTTTCTTC-----TTCTGGGCTTTGCA-TTCCTCCCCCACGG-T-GTGAAAGCGTTCGTTGGAGAGGTGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 494712 209 - 9212255 gctctttgcatatcaaagaaattagcctttggtctgcccgtgttgcagatgtttctctcagcctgtcgtaagtc--ttgactttgcttacagta-tttttcccatagaaaagttttacatttttatgtagtcaaacctacaag--gcttttctttcTTA-----TTCTGGGCTTTGCATTTCCTACTCCATGG-T-ATGGAAGCATTCACTGGAGATGTGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2913840 209 + 4466143 gctctttgcatatcaaagaaattagcctttggtctgctagtgttgcagatgtttctcccagcctgtcttcagtc--ttgactttgcttacagta-ttttttccatagaaaagttttgcatttttatatagtcaaacctgcaag--gcttttctttCTTA-----TTCTGGGCTTTGCATTTCCTACTCCACGG-T-ATGAAAGCATTCATTGGAGATGTGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1616782 209 + 5364348 gctctttgcatatcaaagaaattagccctcggtctgccagtgttgcagatgtttctcccagcctgtcgtaagtc--ttgactttgcttacagta-ttttttccatagaaaagttttacatttttatgtagtcaaacctacaag--gcttttctttctta-----ttctgggctttgcatttcctactccacgg-t-atgaaagcattcattggagatgtgg i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6752625 218 - 9870158 gctctctgtatgtcaaagacattagCCCTTTGTCTGCCGGTGTTGTAAATGTttctcccagtttgtcacaaatc--ttgactttgcttgtgctgtttttttccatagaaaagttttaaatttttatgtagtcaaatgtaccagtctttttttttttttaatgctttctgggctttgcatttcccactccatgact-atgagaacattcactggagatttga i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4338662 209 + 7922563 gctcttagtatgttaaagaaattaGCCCTTCATCTGCTAGTGCTGCACATGTTTTTCCCAGCTTGTCCTGAGTC--TTAACTTT--TTATGTTA-TTTTTTCTATAGAAAAGTTTTAAATTT---TGTGGTCACATATATTAG--TTTTTTTTTTTTTAAGGC-TTCTGGGATTCATATTTCCCACTTCATGATT-ATGAAAACATCCTTTGGAGATTTCA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33187052 206 - 38964690 gctctttgtgtagcaaggagattagctctttgtctgccagtgttg----catttctcccaacttgtcataagtcttttgatt----ttatggca-ttctttctgtaagaaagtttcacatttttatttagtcaagtgtatcgg--tctgttcttttatg--gc-ttctgggttttgcattcCCAACTCCAAGA-TCGTGACAACATTCATTGGTGATCTGA i canFam3.chr26 C 0 I 24 s dasNov3.JH568189 876464 199 - 1116856 gctctttgtatatctatgaaattagccttt-gtctgcctgtgttgcagatattttccccagtttgtaataagtcctttgactttgttgatggta-ttttttccatagaaaagttttaaatttttatgtaa---------------tcttttcttttata--gt-ttctagattttgtatttcccactctaaga-t-atgaaaaaattcatttgagatttga i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9498523 1351 - 31815103 I e mm10.chr5 124831517 729 + 151834684 I a score=692541.000000 s hg38.chr12_KI270834v1_alt 106647 58 + 119498 cccagtacttttgtggt------tttatttat----ttttatat----ctaaatctttgatctacctggaat s panTro5.chr12 127392262 58 + 137163284 CCCAGTACTTTAGTGGT------TTTATTTAT----TTTTATAT----CTAAATCTTTGATCTGCCTGGAAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125742555 58 + 135337776 CCCAGTACTTTTGTGGT------TTTATTTAT----TTTTATAT----CTAAATCTTTGATCTACCTGGAAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8256111 58 - 8369578 CCCAGTACTTTTGTGGT------TTTATTTAT----TTTTATAT----CTAAATCTTTGATCTACCTGGAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97914215 54 + 106955855 cccagtacttttgtggt----------tttat----ttttatat----ctaaatctttgatctacctggaat i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124029281 54 + 133663169 CCCAGTACTTTTGTGGT----------TTTAT----TTTTATAT----CTAAATCTTTGATCTACCTGGACT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128277474 54 + 137757926 CCCAGTACTTTTGTGGT----------TTTAT----TTTTATAT----CTAAATCTTTGATCTACCTGGACT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10675998 54 - 16319837 CCCAGTACTTTTGTGGT----------TTTAT----TTTTATAT----CTAAATCTTTGATCTACCTGGACT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12299931 54 + 20526591 CCCAGTACTTTTGTGGT----------TTTAC----TTTTATAT----CTAAATCTTTGATCTACCTGGACT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119271333 54 + 128539186 CCCTGTACTTTTGTGGT----------TTTAT----TTTTATAT----CTAAATCTTTGATCTACCTGGACT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 622846 54 + 6255621 CCCAGTACTTCTGTGGT----------TTTAT----TTTTATAT----CTAAATCTTTGATCTACCCGGACT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4649187 54 - 8658521 Cctagtacttttgtggt----------tttag----ttttatat----ttaaatcttggatctatctggaat i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114852882 53 + 124281992 TCCAGTTCTTTGATGGT----------TTTAC-----TTTATAT----CTAAATCTTTGATCTACCTGGAAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 494921 54 - 9212255 TTCAGTTCTTTGATGGT----------TTTCC----TTTTATAT----CGAAATCTTTGATCTGCCTAGAAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2914049 54 + 4466143 TTTGGTTCTTTGATGAT----------TTTCC----TTTTATAT----TGAAATCTTTGATCTACCTGGAAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1616991 54 + 5364348 ttcagttctttgatggt----------tttac----ttttatat----ctaaatctttgatctacctggaat i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6752843 54 - 9870158 tccagtacttttgtggt----------tttat----ttttatat----ctaaatctttgatccatctggaat i proCoq1.NW_012154285v1 C 0 I 90 s otoGar3.GL873618 4338871 58 + 7922563 TCCAGTAGTTTTGTGGC----------TTTATTTTGTTTTATAG----CTCAATCTTTGATCCATCTGGAAT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124832246 68 + 151834684 ccccacatttgtgtggcaaatactttaatgac----cttggtatcttcctaAATTGTTAGTCCACCTAGAGT i mm10.chr5 I 729 C 0 s canFam3.chr26 33187282 57 - 38964690 ATTGGTACTTTTGTGGT----------TTCAC-TTCTTTTCTAG----CTAAATCTTTGTTTCCTCTGGAAT i canFam3.chr26 I 24 C 0 s dasNov3.JH568189 876663 55 - 1116856 tctggtacttttatggt----------tttat---tttttatat----ataaatctttgatccatttgtaat i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9498523 1351 - 31815103 I a score=1142994.000000 s hg38.chr12_KI270834v1_alt 106705 102 + 119498 gtggcagtccagattgtttttctcagacaggcggccagttgtgccaacg-ccatc-ttttgCCACTTAGGTGAAA----TATGTCTTTTATCATAAACTAAACTTCCA s panTro5.chr12 127392320 102 + 137163284 GTGGCAGTCCAGATTGTTTTTCTCAGACAGGCGGCCAGTTGTGCCAACG-CCATC-TTTTGCCACTTAGGTGAAA----TACGTCTTTTATCATAAACTAAACTTCCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125742613 102 + 135337776 GTGGCAGTCCAGATTGTTTTTCTCAGACAGGCGGCCAGTTGTGCCAACG-CCATC-TTTTGCCACTTAGGTGAAA----TACGTCTTTTATCATAAACTAAACTTCCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8256169 102 - 8369578 GTGGCAGTCCAGATTGTTTTTCTCAGACAGGCGGCCAGTTGTGCCAACG-CCATC-TTTTGCCACTTAGGTGAAA----TACGTCTTTTATCATAAACTAAACTTCCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97914269 102 + 106955855 GTGGCAGTCCAGATTGTTTTTCTCAAACGGGCAGCCAGTTGTGCCAACG-CCATC-TTTTGCCACTTAGGTGAAA----TACGTCTTTTATCATTAACTAAACTTCCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124029335 101 + 133663169 GTGGCAGTCCAGATTGTTTTTCTCAAATGGGTGGCCAGTTGTGCCAACG-CCATC-TTTTGCCACTCAGGTGAAA----TACGTCTTTTATCATAAACT-AACTTCCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128277528 101 + 137757926 GTGGCAGTCCAGATTGTTTTTCTCAAATGGGTGGCCAGTTGTGCCAACG-CCATC-TTTTGCCACTCAGGTGAAA----TACGTCTTTTATCATAAACT-AACTTCCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10676052 101 - 16319837 GTGGCAGTCCAGATTGTTTTTCTCAAATGGGTGGCCAGTTGTGCCAATG-CCATC-TTTTGCCACTCAGGTGAAA----TACGTCTTTTATCATAAACT-AACTTCCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12299985 101 + 20526591 GTGGCAGTCCAGATTGTTTTTCTCAAATGGGTGGCCAGTTGTGCCAACG-CCATC-TTTTGCCACTCAGGTGAAA----TACGTCTTTTATCATAAACT-AACTTCCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119271387 102 + 128539186 GTGGCAGTCCAGATTGTTTTTCTCAAATGGGCGGCCAGTTGTGCCAACA-CCATC-TTTTGCCACTCAGGTGAAA----TACATCTTTTATCATAAACTAAACTTCCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 622900 101 + 6255621 GTGGCAGTCCAGATTGTTTTTCTCAAATGGGTGGCCACTTGTGCCAACG-CCATC-TTTTGCCACTCAGGTGAAA----TACGTCTTTTATCATAAACT-AACTTCCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4649241 102 - 8658521 gtggcagtccagattgcttttctcaaatgggcagccagttgtgccaacg-ccatc-ttttGCCACTCAGGTGAAA----TACATCTTTTATCATAAACTAAACTTCCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114852935 102 + 124281992 GTGGCAGTCCAGACTGTTTTTCTCAAACAGGCTGCCAGTTGTGCCAGCG-CCATC-TTTGGCTACTCAGGTAAAA----CACGTCTTTTATCATAAACTAAGCTCCCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 494975 106 - 9212255 GTGGCAGTTCAGGTTGTTTTTCTCAAACAGGCTGCCAGTTGTGCCAACG-CCATC-TTTGGCCACTCAGGTGAAACACGCACGTCTTTTATCATAAACTAAGCTCCCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2914103 102 + 4466143 GTGGCGGTCCAGGTTGCTTTTCTCAAACAGGCTGCCAGTTGTCCCAACG-CTGTC-TTTGGCCACTCAGGTAAAA----CACGTCTTTTATCATAAACTAAGCTCCCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1617045 102 + 5364348 GTGGCAGTCCAGATTATTTTTCTCAAACAGGCTGCCAGTTGTGCCAATG-CCATC-TTTGGCCACTCAGGTAAAA----CACGTCTTTTATCATAAACTAAGTTCCCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4338929 100 + 7922563 TTGGTAGTCCGGCTTA--TTTCCCAAGTGGGCTGCCTGTTGTGCTGACA-CCATCTTTTTGCCACTAAGGTGAAA----TATA-CCTTTACCACATGCTGTACTTCTA i otoGar3.GL873618 C 0 I 1 s mm10.chr5 124832314 82 + 151834684 TCGGTGGTC--AGCTG--TTTCCCCAGGGGGAAGCGAACTGACCTAATA-CCAGC-AGTTGTCACTGTGG-GAAA----TCAGTATTTCATCA--------------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33187339 97 - 38964690 CTAGTGGTTCAGCTTATTTTCCCCAG-CAGGCTGCCAGTTGTTCAAATACCCCTC-TTTTGCCTCTACTGTGAAG----TATG-CTTTTATCATGAACTAAACT---- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 876718 79 - 1116856 ttattGATCCAGCTTATTTTTC-----------------------AGCC-CCATC-TTTTCTCCACCATGAGAAA----TGTGTCTTTTATCATACACTGAATGTCTA i dasNov3.JH568189 C 0 I 1 e micMur3.chr21 9498523 1351 - 31815103 I e proCoq1.NW_012154285v1 6752897 90 - 9870158 I a score=764029.000000 s hg38.chr12_KI270834v1_alt 106807 58 + 119498 GGCCAGCTTTGA-CCTGGCATTGGATGGCAGCCCCAGGCTCCCAGCACTTGTCCTCTCT s panTro5.chr12 127392422 58 + 137163284 GGCCAGCTTTGA-CCTGGCATTGGATGGCAGCCCCAGGCTTCCAGCACTTGCCCTCTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125742715 58 + 135337776 GGCCAGCTTTGA-CCTGGCATTGGATGGCAGCCCCAGGCTTCCAGCACTTGCCCTCTCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8256271 58 - 8369578 GGCCAGCTTTGA-CCTGGCATTGGATGGCAGCCCCAGGCTCCCAGCACTTGCCCTCTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97914371 58 + 106955855 GGCCAACTTTGA-CCTGGCATCGGATGGCAGCCCCAGGCTCCCAGCACTTGCCCTCTCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124029436 58 + 133663169 GGCCAGCTTTGA-CCTGGCATTGGATGGCAGCCCCAGGCTCCCAGCACTTGCCCTGTCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128277629 58 + 137757926 GGCCAGCTTTGA-CCTGGCATTGGATGGCAGCCCCAGGCTCCCAGCACTTGCCCTGTCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10676153 58 - 16319837 GGCCAGCTTTGA-CCTGGCATTGGATGGCAGCCCCAGGCTCCCAGCACTTGCCCTGTCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12300086 58 + 20526591 GGCCAGCTTTGA-CCTGGCATTGGATGGCAGCCCCAGGCTCCCAGCACTTGCCCTGTCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119271489 58 + 128539186 GGTCAGCTTTGA-CCTGGCATTGGATGGCAGCCCCAGGTTCCCAGCACTTGCTCTCTCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 623001 58 + 6255621 GGCCAGCTTTGA-CCTGGCATTGGATGGCAGCCCCAGGCTCCCAGCACTTGCCCTGTCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4649343 58 - 8658521 GGCCAGCTTTGA-CCTGGCATTGGATGGCAGCCCCAGGCTCCCAGCACTTGCCCTCTCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114853037 56 + 124281992 GGCCAGCTTTGC-CCTGGCCTTGGATGGTAGCCCCAGGTTCCCAGCACTTGCTCTC--T i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 495081 58 - 9212255 GGCCAGCTTTGC-CCTGGCATTGGATGGCAGCCCCAGGCTCCTGGCACTTGCCCTCTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2914205 58 + 4466143 GGCCAGCTTTGC-CCTGGCAGTGGATGGCAGCCCCAGCCTCCCAGCGCTTGCCCTCTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1617147 58 + 5364348 GGCCAGCTTTGC-CCTGGCATTGGATGGCAGCCCCAGGCTCCCAGCACTTGCCCTCTTT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6752987 59 - 9870158 GGCCAGCATTGGCCCTGGCACGAGAGGGCAGTGCCGGGCTCCCACCACGGGCCCTCACC i proCoq1.NW_012154285v1 I 90 C 0 s otoGar3.GL873618 4339030 59 + 7922563 AGCTGGCTTTGACCCTGGCAGGTGATGGCCGTGCCAGGCTCCCACCATTTGCCCCTGGC i otoGar3.GL873618 I 1 C 0 s mm10.chr5 124832396 48 + 151834684 -----GCTTTGAACCTGGTGTCA-----CAGC-CCAAGCTCCCACACCTTGCCTACTTT i mm10.chr5 C 0 C 0 s canFam3.chr26 33187436 59 - 38964690 GATCAGCTCCAGCCCTGGCACTTGATGGTGGCCCCAGGCTCCTGCCAGTTTCCTTCCCT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 876798 59 - 1116856 GGTCAGATTTATCCCTGGACTTTAATTGCAGTGCCAGGCTTTTCTGAGTTGCCTTCCCT i dasNov3.JH568189 I 1 C 0 e micMur3.chr21 9498523 1351 - 31815103 I a score=3883985.000000 s hg38.chr12_KI270834v1_alt 106865 194 + 119498 TCTCTCCAGGTGACCGAGAGCGAGCCCAGCGTGATGTGGCTCTCGGGGCTGCACATCCCTGAGTCCTACCTCACGGCGCTGGTGCAGGCCACCTGCCGGAAGAACGGCTGGCCACTGGACCGCTCCACCTTGTTCACACAAGTGACCAAGTTCCAGGATGCAGATGAAGTGAATGAGCGGGCGGGACAAGGTAC s panTro5.chr12 127392480 194 + 137163284 TCTCTCCAGGTGACCGAGAGCGAGCCCAGCGTGATGTGGCTCTCGGGGCTGCACATCCCTGAGTCCTACCTCACGGCGCTGGTGCAGGCCACCTGCCGGAAGAACGGCTGGCCACTGGACCGCTCCACCTTGTTCACACAAGTGACCAAATTCCAGGATGCAGATGAAGTGAATGAGCGGGCGGGACAAGGTAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125742773 194 + 135337776 TCTCTCCAGGTGACCGAGAGCGAGCCCAGCGTGATGTGGCTCTCTGGGCTGCACATCCCTGAGTCCTACCTCACGGCGCTGGTGCAGGCCACCTGCCGGAAGAACGGCTGGCCACTGGACCGCTCCACCTTGTTCACACAAGTGACCAAATTCCAGGATGCAGATGAAGTGAATGAGCGGGCGGGACAAGGTAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8256329 194 - 8369578 TCTCTCCAGGTGACCGAGAGCGAGCCCAGCGTGATGTGGCTCTCGGGGCTGCACATCCCTGAGTCCTACCTCACGGCGCTGGTGCAGGCCACCTGCCGGAAGAACGGCTGGCCACTGGACCGCTCCACCTTGTTCACACAAGTGACCAAGTTCCAGGATGCAGATGAAGTGAATGAGCGGGCGGGACAAGGTAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97914429 194 + 106955855 TGTCTCCAGGTGACCGAGAGCGAGCCCAGCGTGATGTGGCTCTCGGGGCTGCACATCCCTGAGTCCTACCTCACGGCGCTGGTGCAGGCCACCTGCCGGAAGAACGGCTGGCCGCTGGACCGCTCCACCTTGTTCACACAAGTGACCAAGTTCCGGGATGCAGATGAAGTGAATGAGCGGGCGGGACAAGGTAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124029494 194 + 133663169 TCTCTCCAGGTCACCGAGGGTGAGCCCAGCGTGATGTGGCTCTCGGGGCTGCACATCCCTGAGTCCTACCTCACGGCGCTGGTGCAGGCCACCTGCCGGAAGAACGGCTGGCCGCTGGACCGCTCCACCTTGTTCACACAAGTGACCAAGTTCCAGGACGCAGATGAAGTGAATGAGCGGGCGGGACAAGGTAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128277687 194 + 137757926 TCTCTCCAGGTCACCGAGGGTGAGCCCAGCGTGATGTGGCTCTCGGGGCTGCACATCCCTGAGTCCTACCTCACGGCGCTGGTGCAGGCCACCTGCCGGAAGAACGGCTGGCCGCTGGACCGCTCCACCTTGTTCACACAAGTGACCAAGTTCCAGGACGCAGATGAAGTGAATGAGCGGGCGGGACAAGGTAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10676211 194 - 16319837 TCTCTCCAGGTCACCGAGGGTGAGCCCAGCGTGATGTGGCTCTCGGGGCTGCACATCCCTGAGTCCTACCTCACGGCGCTGGTGCAGGCCACCTGCCGGAAGAACGGCTGGCCGCTGGACCGCTCCACCTTGTTCACACAAGTGACCAAGTTCCAGGACGCAGATGAAGTGAATGAGCGGGCGGGACAAGGTAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12300144 194 + 20526591 TCTCTCCAGGTCACCGAGGGTGAGCCCAGCGTGATGTGGCTCTCGGGGCTGCACATCCCTGAGTCCTACCTCACGGCGCTGGTGCAGGCCACCTGCCGGAAGAACGGCTGGCCGCTGGACCGCTCCACCTTGTTCACACAAGTGACCAAGTTCCGGGACGCAGATGAAGTGAATGAGCGGGCGGGACAAGGTAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119271547 194 + 128539186 TCTCTCCAGGTCACCGAGGGCGAGCCCAGCGTGATGTGGCTCTCAGGGCTGCACATCCCTGAGTCCTACCTCACGGCGCTGGTGCAGGCCACCTGCCGGAAGAATGGCTGGCCGCTGGACCGCTCCACCTTGTTCACACAAGTGACCAAGTTCCAGGATGCAGATGAAGTGAATGAGCGGGCGGGACAAGGTAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 623059 194 + 6255621 TCTCTCCAGGTCACCGAGGGTGAGCCCAGCGTGATGTGGCTCTCAGGGCTGCACATCCCTGAGTCCTACCTCACGGCGCTGGTGCAGGCCACCTGCCGGAAGAACGGCTGGCCGCTGGACCGCTCCACCTTGTTCACACAAGTGACCAAGTTCCAGGACGCAGATGAAGTGAATGAGCGGGCGGGACAAGGTAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4649401 193 - 8658521 TCTCT-CAGGTCACCGAGGGCGAGCCCAGCGTGATGTGGCTCTCGGGGCTGCACATCCCTGAGTCCTACCTCACGGCGCTGGTGCAGGCCACCTGCCGGAAGAACAGCTGGCCGCTGGACCGCTCCACCCTGTTCACACAAGTGACCAAGTTCCAGGACGCAGATGAAGTGAATGAGCGGGCGGGACAAGGTAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114853093 194 + 124281992 TCTCCCCAGGTTACTGAGAGTGAGCCCAGCGTGATGTGGCTCTCGGGGCTGCACATCCCCGAATCCTACCTCACGGCACTGGTACAGGCCACCTGCCGGAAGAACGGCTGGCCACTGGACCGCTCCACCTTGTTCACACAAGTGACCAAGTTCCAGGATGCAGATGAAGTGAATGAGCGGGCGGGACAAGGTAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 495139 194 - 9212255 TCTCCCCAGGTTACTGAGAGTGAGCCCAGCGTGATGTGGCTCTCGGGGCTGCACATCCCCGAATCCTACCTCACGGCACTGGTGCAGGCCACCTGCCGGAAGAACGGCTGGCCACTGGACCGCTCCACTTTGTTCACACAAGTGACCAAGTTCCAGGATGCAGATGAAGTGAATGAGCGGGCGGGACAAGGTAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2914263 194 + 4466143 TCTCCCCAGGTTACTGAGAGTGAGCCCAGCGTGATGTGGCTCTCGGGGCTGCACATCCCCGAGTCCTACCTCACGGCGCTGGTGCAGGCCACCTGCCGGAAGAATGGCTGGCCACTGGACCGCTCCACCTTGTTCACACAAGTGACCAAGTTCCAGGATGCAGATGAAGTGAATGAGCGGGCGGGACAAGGTAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1617205 194 + 5364348 TCTCCCCAGGTTACTGAGAGTGAGCCCAGCGTGATGTGGCTTTCGGGGCTGCACGTCCCCGAATCCTACCTCACGGCACTGGTGCAGGCCACCTGCCGGAAGAACGGCTGGCCACTGGACCACTCCACCTTGTTCACACAAGTCACCAAGTTCCAGGATGCAGAGGAAGTGAATGAGCGGGCGGGACAAGGTAC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9499874 194 - 31815103 TCTCTCCAGGTCACCGAGAGCGAGCCCAGCGTGATGTGGCTCTCGGGGCTGCACATCCCGGAGTCCTACCTCACGGCCCTGGTGCAGGCCACCTGCCGGAAGAACGGCTGGCCTCTGGACCGTTCCACCTTGTTCACGCAAGTGACCAAGTTCCAAGATGCAGACGAAGTGAATGAGCGGGCAGGACAAGGTAC i micMur3.chr21 I 1351 I 391 s proCoq1.NW_012154285v1 6753046 194 - 9870158 TTTCTCCAGGTCACCGAGAGCGAGCCCAGTGTGATGTGGCTCTCAGGGCTGCACGTCCCAGAGTCCTACCTCACGGCCCTGGTGCAGGCCACCTGCAGGAAGAACGGCTGGCCTCTGGACCGTTCCACCTTGTTCACGCAAGTGACCAAGTTCCGAGATGCGGACGAAGTGAATGAGCGGGCAGGACAAGGTAC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4339089 194 + 7922563 TCCTTCCAGGTCACCGAGAGTGAACCCAGTGTGATGTGGCTCTCAGGGCTGCATATCCCAGAATCCTACCTTACGGCTCTGGTGCAGGCCACCTGCCGGAAGAATGGCTGGCCCCTGGACCGTTCCACCTTGTTCACACAAGTGACCAAGTTCCAAGAAGCAGATGAAGTGAACGAGCGGGCAGGACAAGGTAC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124832444 190 + 151834684 ----TGCAGGTTACTGAGGGCGAGCCCAGTGTGATGTGGCTCTCTGGGCTGCACATCCCTGAGTCCTACCTCACGGCCCTGGTACAGGCCACATGCCGGAGGAATGGCTGGCCGTTGGACCGGTCCACCTTGTTTACACAAGTGACCAAGTTCCAGGATGCCGATGAAGTAAACGAGCGTGCGGGGCAAGGTAT i mm10.chr5 C 0 C 0 s canFam3.chr26 33187495 194 - 38964690 CCCCTCCAGGTTACTGAGAGTGAGCCCAGTGTGATGTGGCTCTCGGGGCTGCACATCCCAGAATCCTACCTCACGGCCCTGGTGCAGGCCACCTGCCGGAGGAACAACTGGCCACTGGACCGCTCCACCTTGTTCACGCAAGTGACCAAGTTCCAGGATGCAGATGAAGTAAATGAGCGGGCAGGACAAGGTAC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 876857 194 - 1116856 TCTCTCCAGGTCACTGAGAGTGAGCCCAGCGTGATGTGGCTCTCGGGACTGCACATTCCAGAATCCTATCTCACGGCCCTCGTGCAGGCGACCTGCCGGAGGAATGGCTGGCCGCTGGACCGCTCCACCTTGTTCACACAGGTGACCAGGTTCCAAGATGCAGATGAAGTGAATGAGCGAGCAGGACAAGGTAA i dasNov3.JH568189 C 0 C 0 a score=2192892.000000 s hg38.chr12_KI270834v1_alt 107059 200 + 119498 CGTCAGCTCGTTAGGGATCCACAGC--CTCTCACTTAGGATTTCTCTCCCTGAACCACCTCCAACTCAAAGGGACAGGCATAGCGTGGGCCTAAATGGGCCAGGCCATGTTTGAAAGCCAGC-------------CTGCTGC---AAATATTTCCTGTGTCTCTGCACTGCCCATGTCTTAACACCTCTGAGGGTGGATACGGAAGTTTCTCTTCCAC s panTro5.chr12 127392674 200 + 137163284 CGTCAGCTCGTTAGGGATCCACAGC--CTCTCACTTAGGATTTCTCTCCCTGAGCCACCTCCAACTCAAAGGGACAGGCATAGCGTGGGCCTAAATGGGCCAGGCCATGTTTGAAAGCCAGC-------------CTGCTGC---AAATATTTCCTGTGTCTCTGCACTGCCCATGTCTTAACACCTCTGAGGGTGGATACGGAAGTTTCTCTTCCAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125742967 200 + 135337776 CGTCAGCTCGTTAGGGATCCACAGC--CTCTCACTTAGGATTTCTCTCCCTGATCCACCTCCAACTCAAAGGGACAGGCATAGCGTGGGCCTAAATGGGCCAGGCCATGTTTGAAAGCCAGC-------------CTGCTGC---AAATATTTCCTGTGTCTCTGCACTGCCCATGTCTTAACACCTCTGAGGGTGGATACGGAAGTTTCTCTTCCAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8256523 200 - 8369578 CATCAGCTCGTTAGGGATCCACAGC--CTCTCACTTAGGATTTCTCTCCCTGAGCCACCTCCAACTCAAAGGGACAGGCATAGCGTGGGCCTAAATGGGCCAGGCCATGTTTGAAAGCCAGC-------------CTGCTGC---AAATATTTCCTGTGTCTCTGCACTGCCCATGTCTTAACACCTCTGAGGGTGGATACGGAAGTTTCTCTTCCAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97914623 183 + 106955855 CATCAGCTCGTTAGGGATCCGCAG-------------------CTCTCCCTGAGCCACCTCCAACTCAAAGGGACAGGCATAGCGTGGGCCTAAATGGGCCAGGCCATGTTTGAAAGCCAGC-------------CTGCTGC---AAATATTTCCTGTGTCTGTGCACTGCCCATGTCTTAACACCTCTGAGGGTGGGTACGGAAGTTTCTCTCCCAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124029688 197 + 133663169 TGTCAGCTCATC-GGGATCCACAGC--CTCTCACTTAGGATTTCTCTCCCTGAGCCGCCTCCAAGTCAAAGGGATAGGCAGAGCGTGGGCCTTGATGGGCCAGGCCATGTTTGAAAGGCAGC-------------CTGCCAA---AAATATTTCC--TGTCTGTTCACTGCCCATGTCGTAACACCTCTGAGGGTGGATACAGAAGTTTCTCTTCCAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128277881 197 + 137757926 CGTCAGCTCATC-GGGATCCACAGC--CTCTCACTTAGGACTTCTCTCCCTGAGCCGCCTCCAAGTCAAAGGGAATGGCATAGCGTGGGCCTCGATGGGCCAGGCCATGTTTGAAAGGCAGC-------------CTGCCAA---AAATATTTCC--TGTCTGTGCACTGCCCATGTCGTAACACCTCTGAGGGTGGATACAGAAGTTTCTCTTCCAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10676405 198 - 16319837 CATCAGCTCATCAGGGATCCACAGC--CTCTCACTTAGGATTTCTCTCCCTGAGCCACCTCCAAGTCAAAGGGATAGGCATAGCGTGGGCCTCGATGGGCCAGGCCATGTTTGAAAGGCAGC-------------CTGCCAA---AAATATTTCC--TGTCTGTGCACTGCCCATGTCGTAACACCTCTGAGGGTGGATACAGAAGTTTCTCTTCCAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12300338 198 + 20526591 CGTCAGCTCATCAGGGATCCACAGC--CTCTCACTTAGGATTTCTCTCCCTGAGCCACCTCCAAGTCAAAGGGATAGGCATAGCGTGGGCCTCGATGGGCCAGGCCATGTTTGAAAGGCAGC-------------CTGCCAA---AAATATTTCC--TGTCTGTGCACTGCCCATGTCGTAACACCTCTGAGGGTGGATACAGAAGTTTCTCTTCCAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119271741 200 + 128539186 TGTCAGCTTGTCAGGGATCCACAGC--CTCTCACTTAGGATTTCTCTCCCTGAGCCACCTCCAAGTCAAAGGGATAGGCATAGCGTGGCCCTCGATGGCCCAGGCCATGTTTGAAAGGCAGC-------------CTGCTGC---AAATATTTCCTGTGTCTGTGCACTGCCCATGTCATAACACCTCTGAGGGTGGATACAGAAGTTTCTCTTCCGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 623253 198 + 6255621 CGTCAGCTCATCAGGGATCCACAGC--CTCTCACTTAGGATTTCTCTCCCTGAGCCACCTCCAAGTCAAAGGGATAGGCATAGCGTGGGCCTCGATGGGCCAGGCCATGTTTGAAAGGCAGC-------------CTGCCAA---AAATATGTCC--TGTCTGTGCACTGCCCATGTCGTAACACCTCTGAGGGTGGATACAGAAGTTTCTCTTCCAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4649594 200 - 8658521 CGTCAGCTCGTCAGGGATCCACAGC--CTCTCACTTAGGATCTCTCTCCCTGAGCCACCTCCAAGTCAAAGGGATAGGCATAGTGTGGGCCTCGATGGGCCAGGCCATGTTTGAAAGGCAGC-------------CTGCTGC---AAATACTTCCTGTGTCTGCGCACTGCCCATGTCGTAACACCTCTGAGGGTGAATATAGAAGTTTCTCTTCCAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114853287 200 + 124281992 GGTCAGCTCGTTAGGGATCCACAGC--CTCTCACTTAGGATTTCTCTCCTTGAGCCACCTCCAAGTCAAAGGGACAGGCATAGTATGGGCCACAATGGGCCAGGCCATGTTTGAAAGCCAGC-------------CTGCTGC---AAAGATTTCCTGTGTCTGTGGACTGCCCGAATCTTAACACCTCTGAGGGCGAATACGGAAGTTTCTCTTCCAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 495333 200 - 9212255 GGTCAGCTCGTGAGGGATCCACAGC--CTCTCACTTAGGATTTCTCTCCTCGAGCCACCTCCGAGTCAAAGGGACAGGCATAGTGTGGGCCACAGTGGGCCAGGACATGTTTGAAAGCCAGC-------------CTGCTGC---AAAGATTTCCTGTGTCTGCGGACAGCCTGTATCTTGACACCTCTGAGGGTGAATACGGAAGTTTCTCTTCCAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2914457 200 + 4466143 GGTCAGCTCGTTAGGGATCCACAGC--CTCTCACTTAGGATCTCTCCCCTTGAGCCACCTCCAAGTCAAAGGGACAGGCATAGTGTGGGCCATAATGGGCCAGGCCATGTTTGAAAGCCAGC-------------CTGCTGC---AAAGATTTCCTGTGTCTGCGGACTGCCCGTATCTTAACACCTCTGAGGGTGAATATGGAAGTTTCTCTTCCAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1617399 200 + 5364348 GGTCAGCTTGTTAGGGAGCCACAGC--TGCTCACTTAGGATTTCTCTCCCTGAGCCACCTCCAAGTCAAAGGGACAGGCATAGTGTGGGCCACAATGGGCCAGGCCATGTTTGAAAGCCAGC-------------CTGCTGC---AAAGATTTCCTGTGTCTGCGGACTGCCCGTATCTTAACACCTCTGAGGGTGAATACGGAAGTTTCTCTTCCAC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6753240 136 - 9870158 AGTGAGCTTGTTAT--GGCCACAGG--CTCTCACTTAGGGCTCCTGTCCCTGAGGCACCCTCAATTCAAAGGGACAAGCACAGTGTGCACC------------------------------------------------------------------------------GCCCGTGTCTTGACAGCTCTGAGGGTGAATACCTAAGTTTCTCTTTCAC i proCoq1.NW_012154285v1 C 0 I 185 s otoGar3.GL873618 4339283 178 + 7922563 GGTCAGCTGGCTGTGCGCCCACTGG---TCTCCCTCAGGGTTTCTTTCCCTGAGACAACCCCGGCTCAAAGGCACAAGCATAGTGTGCACCAGAATGCA-CAGGTCCTGTTCAGGAGCCA-------------------------------TTCATGTGT----GCACTGCCCATGGCTTGGTGCTGCTGAGGGTGCATACACAAG-TTCTCATCCAC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124832634 145 + 151834684 GGTAAAC--GTCATGTAT--GTTGC--TTTCTACCGGGGGCTTCCCTCCCAGAATCATTCCCAAATCCAAG---------TACCATG--------TGGACTAGGCCTTCCTT--AAGCAGGG-------------CTGTTGCCCTCAGTGCTTTCTGTG----------------------GCATCGCAGAGAGCAG-------AGTTTCTC------ i mm10.chr5 C 0 C 0 s canFam3.chr26 33187689 192 - 38964690 AGTCAGCTCGCGGTGGA----------------------GTGTCCCTCCTCGGGCCACCCCCGATTCAGAGGAGCAAGTGTA-TGTGGGCCAAAATGGGCCAGGCCATGTTCGAAAATGAGCTAACATTGGTTAACTGCTGC---TAACATTGGTGCTGTGTGTGTACTAACTGTGTCTTGACCTCTCTGAGGGTGAATACATGGGCTTCTCTTCCAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 877051 159 - 1116856 GGGCAGCTCACAGTGGAGTCACAGCCCCTCTCCTTTAGGGGTTCCCTCTCTGAGAC-CTCCTGGTTCAAAGGGGCAAGCAGAGTGTGGACCAGAATGTGCCAGGCC-------------AGA-------------CTGACAG---AGATAGTTGC--TGTC-----------------------ACTCTGAGGGTGAATA----AGTTTCTCTTCCAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9500068 391 - 31815103 I a score=1324480.000000 s hg38.chr12_KI270834v1_alt 107259 102 + 119498 TTTCTCCGTTGAGACCTGGG-GTCTATGGCAGGGGAGACCTGAACCATGTTCACTCTGCTAGCTCATGGCAAGTGGGCTCCTAGGTCAGAATTAGCTCTTGCA s panTro5.chr12 127392874 101 + 137163284 TTTCTCCGTTGAGACCTGGG-GTCTATGGCAGGGGAGACCTGAACCGTGTTCACTCTGCTAGCTCATGGCAA-TGGGCTCCTAGGTCAGAATTAGCTCTTGCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743167 101 + 135337776 TTTCTCCGTTGAGACCTGGG-GTCTATGGCAGGGGAGACCTGAACCATGTTCACTCTGCTAGCTGATGGCAA-TGGGCTCCTAGGTCAGAATTAGCTCTTGCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8256723 102 - 8369578 TTTCTCCATTGAGACCTGGG-GTCTATGGCAGGGGAGACCTGAACCATGTTCACTCTGCTAGCTCATGGCAAGTGGGCTCCTAGGTCAGAATTAGCTCTTGCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97914806 102 + 106955855 TTTCTCCGTTGAGACCTGGG-GTCTATGGCAGGGGAGACCTGAACCATGTTCACTCTGCTAGCTCATGGGAAGTGGGCTCCTGGGTCAGAATTAGCTCTCGCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124029885 102 + 133663169 TTTCTCCGTTGAGACCTGGG-GTCTATGGCAGGGGAGACCTGAACCATGTTTACTCTGCTAGCTCATGGGAAGTGGGCTCCTAGGGCAGAATTAGCTCTTGCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278078 102 + 137757926 TTTCTCCGTTGAGACCTGGG-GTCTATGGCAGGGGAGACCTGAACCATGTTTACTCTGCTAGCTCATGGGAAGTGGGCTCCTAGGGCAGAATTAGCTCTTGCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10676603 102 - 16319837 TTTCTCCGTTGAGACCTGGG-GTCTATGGCAGGGGAGACCTGAACCATGTTTACTCTGCTAGCTCATGGGAAGTGGGCTCCTAGGGCAGAATTAGCTCTTGCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12300536 102 + 20526591 TTTCTCCGTTGAGACCTGGG-GTCTATGGCAGGGGAGACCTGAACCATGTTCACTCTGCTAGCTCATGGGAAGTGGGCTCCTAGGGCAGAATTAGCTCTTGCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119271941 102 + 128539186 TTTCTCCATTGAGACCTGGG-GTCAATGGCAGGGGAGACCTGAACCATGTTCACTCTGCTAGCTCATGGGAAATGGGCTCCTAGGGCAGAATTAGCTCTTGCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 623451 102 + 6255621 TTTCTCCGTTGAGACCTGGG-GTCTATGGCAGGGGAGACCTGAACCATGTTCACGCTGCTAGCTCATGGGAAGTGGGCTCCTAGGGCAGAATTAGCTCTTGCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4649794 102 - 8658521 TTTCTCCATTGAGACCTGGG-GTCTATGGCAGGGGAGACCTGAACCATGTTCACTCTGCTAGCTCATGGGAAGTGGGCTCCTAGGGCAGAATTAGCTCTTGCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114853487 102 + 124281992 TTTCTCTGTTGAGACCTGGG-GTCAATGGCAGGGGAGACCTGAACCACGTTCACTCTGCTAGTTCATGGGAAGTGGGCTCCTAGGTCAGAATTAGCTCTTGCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 495533 102 - 9212255 TTTCTCCATTGAGACCTGGG-GTCAACGGCAGGGGAGACCTGAACCATGTTCACTCCGCTAGTTCATGGGAAGTGGGCTTCTAGGTCAGAATTAGCTCTTGCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2914657 100 + 4466143 TTTCTCCATTGAGACCC--C-CTCAATGGCAGGGGAGACCTGAACCACGTTCACTCTGCTAGTTCATGGGAAGTGGGCTCCTAGGTCAGAATTAGCTCTTGCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1617599 102 + 5364348 TTTCTCCGTTGAGACCTGGG-GTCAATGGCAGGGGAGACCTGAACCACGTTCACTCTGCTAGTTCATGGGAAGTGGGCTCCTAGGTCAGAATTAGCTCTTGCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4339461 98 + 7922563 TGTCTCCATTGACACCTGGG-GT---TCTCAAGGCAGACCTGAACCATGTCCACCCTGCTAGTTTGTGGGGAATGAGCTCCTACATCAGAGTT-GCTCTTGCT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124832779 68 + 151834684 --------------ACTGGA-GACT-----AGCAGAGACATGGG-------------GTTAGTCTGCAGCAAGTGGGTTTCTGGGTCA-AGTGAGTTTTT-CA i mm10.chr5 C 0 C 0 s canFam3.chr26 33187881 101 - 38964690 TTTCAATGCCGAGACCTGGG-GTTGATGTCATAGG-GACCTGAAACATGTTCACCTTGCTTGTTTGTGGGAAGTGGGCTCCTCGGTCAGAATTAGATCCTTCA i canFam3.chr26 C 0 I 173 s dasNov3.JH568189 877210 103 - 1116856 TTTCTCCATTGAGACCTGGGAATTGATGCCAGGGAAAGCCTGAATCATGGTCATTCCGCTAGCTGGTAGGAAATGAGTTCCTAGGTTAGAACGAGCTATTTCA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9500068 391 - 31815103 I e proCoq1.NW_012154285v1 6753376 185 - 9870158 I a score=1208557.000000 s hg38.chr12_KI270834v1_alt 107361 102 + 119498 ------AAAA------CCATCAGGT------------------------GGCTTTCTTGTAACCCCTGACGGGGCCAGGGGCATGGGAGCC-ACAGAGCAGCATGGACTAACTTGGTTGGAACTC-TTTGATTATGCCAG s panTro5.chr12 127392975 102 + 137163284 ------AAAA------CCATCAGGT------------------------GGCTTTCCTGTAACCCCTGACGGGGCCAGGGGCATGGGAGCC-ACAGAGCAGCATGGACTAACTTGGTTGGAAATC-TTTGATTATGCCAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743268 102 + 135337776 ------AAAA------CCATCAGGT------------------------GGCTTTCCTGTAACCCCTGACGGGGCCAGGGGCATGGGAGCC-ACAGAGCAGCATGGACTAACTTGGTTGGAAATC-TTTGATTATGCCAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8256825 100 - 8369578 ------AAAA------CCATCAGGT------------------------GGCTTTCCTGTAACCCCTGACGGGGCCAGGGGCATGGGAGCC-ACAGAGCAGCATGGACTAACTTGGTTGGAA--C-TCTGATTATGCCAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97914908 102 + 106955855 ------AAAA------CCATCAGGT------------------------AGCTTTCCGGTAACCCCTGACGGGGCCAGGGGCATGGGAGCC-ACAGAGCAGCATGGACTAGCTTGGTTGGAACTC-TTTGATTACACCAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124029987 102 + 133663169 ------AAAA------CCATCAGGT------------------------GGCTTTCCTGTAACCCCTGACGGGGCCAGGGGCATGGGAGCC-ACAGAGCAGTATGGACTAACTTGGTTGGAACTC-TTTGATTATGCCAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278180 102 + 137757926 ------AAAA------CCATCAGGT------------------------GGCTTTCCTGTAACCCCTGACGGGGCCAGGGGCATGGGAGCC-ACAGAGCAGTATGGACTAACTTGGTTGGAACTC-TTTGATTATGCCAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10676705 102 - 16319837 ------AAAA------CCATCAGGT------------------------GGCTTTCCTGTAACCCCTGACGGGGCCAGGGGCATGGGAGCC-ACAGAGCAGTATGGACTAACTTGGTTGGAACTC-TTTGATTATGCCAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12300638 102 + 20526591 ------GAAA------CCATCAGGT------------------------GGCTTTCCTGTAACCCCTGACAGGGCCAGGGGCATGGGAGCC-ACAGAGCAGTGTGGACTAACTTGGTTGGAACTC-TTTGATTATGCCAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272043 103 + 128539186 ------AAAA------CCATCAGGT------------------------GGCTTTCCTGTAACCCCTGACGGGGCCAGGGGCATGGGAGCC-ACAGAGCAGTATGGACTAACTTGGTTGGAACTCTTTTGATTATGCCAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 623553 102 + 6255621 ------AAAA------CCATCAGGT------------------------GGCTTTCCTGTAACCCCTGACAGGGCCAGGGGCATGGGAGCC-ACAGAGCAGTATGGACTAACTTGGTTGGAACTC-TTTGATTATGCCAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4649896 102 - 8658521 ------AAAA------CCATCAGGT------------------------GGCTTTCCTGTAACCCTTTACGGGGCCAGGGGCATGGGAGCC-ACAGAGCAGTATGGACTAACTTGGTTGGAACTC-TTCGATTATGCCGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114853589 101 + 124281992 ------AAAA------GCATCAGGT------------------------GGCTTTCCTGTAACCCTTGACAGGGGCAGGGGCAC-GGAGCC-ACCAAGCAGTGTGGACTAACTTGGCTGGAACTC-CTAAATTATGCCAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 495635 101 - 9212255 ------AAAA------CCATCAGGT------------------------GGCTTTCCTGTAACCCTTGACAGGGACCGGGGCAT-GGAGCC-ACCAAGCAGTGTGGACTAACTTGGCCGGAACTC-TTAAATTATGCCAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2914757 101 + 4466143 ------AAAA------CCATCAGGT------------------------GGCTTTCCTGTAACCCTTGACAGGGACGGGGGCAT-GGAGCC-ACCAAGCAGTGTGGACTAACTTGGCTGGAACTC-TTAAATTATGCCAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1617701 101 + 5364348 ------AAAA------CCATCAGGT------------------------GGCTTTCCTGTAACCCTTGACAGGGACAGGGGCAT-GGAGCC-ACCAAGCAGTGTGGAATAACTTGGCTGGAACTT-GTAAATTATGCCAT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4339559 104 + 7922563 ------AAGAATTAGTTCAACAGGT------------------------GGCTTCCCTGTAAACCT----GGGGCCAGGGGCATGGGAGCC-AGAGCACAAAGTGGACTAGCTTGGTTGGGACCA-TTAGATTATGCTAT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124832847 98 + 151834684 ------GAGA------TCA-CGGAT------------------------GGCTTCCCTGTAATCCCTGA--GGGGCAGAAGTGTAGGAGCC-AGAGAGCA-CATAGGCTGGCTGGCCTGGACCCT-GTCAGGCACACCCA i mm10.chr5 C 0 C 0 s canFam3.chr26 33188155 117 - 38964690 ------aaaa------gaaTTAGATCCTTCAAAGAACTGGATCCCTGAGGGCTTCTCTGGAAACCCTGA-GGGGCCAAGGGGGTGGGTGTTAAGAGGGCAGGTCAGACCA----GGTTGGACCCG-TTAAATTAT----- i canFam3.chr26 I 173 C 0 s dasNov3.JH568189 877313 107 - 1116856 AAGAACTAGA------TCACCAGGT------------------------GGCTTCCCTGTAAACCCTGA-GCGGCCAGAGGCCTGGGAGCC-AGAGAAGAGTATAGACTAGCTTGGTTGGAACCA-TTAAGTTTTACTTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9500068 391 - 31815103 I e proCoq1.NW_012154285v1 6753376 185 - 9870158 I a score=43426.000000 s hg38.chr12_KI270834v1_alt 107463 4 + 119498 AACT- s panTro5.chr12 127393077 4 + 137163284 AACT- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743370 4 + 135337776 AACT- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8256925 4 - 8369578 AACT- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915010 4 + 106955855 AACT- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030089 4 + 133663169 AACT- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278282 4 + 137757926 AACT- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10676807 4 - 16319837 AACT- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12300740 4 + 20526591 AACT- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272146 4 + 128539186 AACT- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 623655 4 + 6255621 AACT- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4649998 4 - 8658521 AACT- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114853690 4 + 124281992 AACT- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 495736 4 - 9212255 AACT- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2914858 4 + 4466143 AACT- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1617802 4 + 5364348 AACT- i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6753561 4 - 9870158 AACT- i proCoq1.NW_012154285v1 I 185 C 0 s otoGar3.GL873618 4339663 4 + 7922563 AACT- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124832945 1 + 151834684 -A--- i mm10.chr5 C 0 C 0 s canFam3.chr26 33188272 4 - 38964690 AACA- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 877420 4 - 1116856 -GTTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9500068 391 - 31815103 I a score=1268372.000000 s hg38.chr12_KI270834v1_alt 107467 105 + 119498 TCAGG-----------------------------------------TCCCTTA-------------------GACATTGGTTA-----------------------------CTGACTGTGCAAATGAGAGCTGGAAACTGCTGTTTCCCCGGGTCCATGTtgtctt-agagttcttttaa-ctgcaaggaacaaa s panTro5.chr12 127393081 105 + 137163284 TCAGG-----------------------------------------TCCCTTA-------------------GACATTGGTTA-----------------------------CTGACTGTGCAAGTGAGAGCTGGAAACTGCTGTTTCCCCGGGGCCATGCtgtctt-agagttcttttaa-ctgcaaggaacaaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743374 105 + 135337776 TCAGG-----------------------------------------TCCCTTA-------------------GACATTGGTTA-----------------------------CTGACTGTGCAAGTGAGAGCTGGAAACTGCTGTTTCCCCGGGGCCATGCtgtctt-agagttcttttaa-ctgcaaggaacaaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8256929 105 - 8369578 TCAGG-----------------------------------------TCCCTTA-------------------GACATTGGTTA-----------------------------CTGACTGTGCAAATGAGAGCTGGAAACTGCTGTTTCCCTGGGGCCATGTtgtctt-agagttcatttaa-ctgcaaggaacaaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915014 105 + 106955855 TAAGG-----------------------------------------TCCCTTA-------------------GACATTGGTTA-----------------------------CTGACTGTGCAGATGAGAGCTGGAAACTGCTGTTTCCCCGGGGCCATGTtgtctt-agagttcatttaa-ctgcaaggaacaaa i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030093 106 + 133663169 TCAGG-----------------------------------------TCCTTTA-------------------GACAATGGTTA-----------------------------CTGACTCTGTAAACGAGAACTGGAAACTGCTGTTTCCCTGGGGCCATGTTGTCTTAAGAGTTCATTTAA-CTGCAAGGAACAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278286 106 + 137757926 TCAGG-----------------------------------------TCCTTTA-------------------GACAATGGTTA-----------------------------CTGACTCTGTAAACGAGAACTGGAAACTGCTGTTTCCCCGGGGCCATGTTGTCTTAAGAGTTCATTTAA-CTGCAAGGAACAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10676811 106 - 16319837 TCAGG-----------------------------------------TCCTTTA-------------------GACAATGGTTA-----------------------------CTGACTCTGTAAACGAGAACTGGAAACTGCTGTTTCCCCGGGGCCATGTTGTCTTAAGAGTTCATTTAA-CTGCAAGGAACAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12300744 106 + 20526591 TCAGG-----------------------------------------TCCTTTA-------------------GACAATGGTTA-----------------------------CTGACTGTGTAAACGAGAACTGGAAACTGCTGTTTCCCCGGGGCCATGTtgtcttaagagttcatttaa-ctgcaaggaacaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272150 106 + 128539186 TCAGG-----------------------------------------TCCCTTA-------------------GACATTGGTTA-----------------------------CTGACTGTGTAAACGAGAACTGGAAACTGCTGTTTCCCCGGGGCCATGTTGTCTTAAGAGTTCATTTAA-CTGCAAGGAACAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 623659 106 + 6255621 TCAGG-----------------------------------------TCCTTTA-------------------GACAATGGTTA-----------------------------CTGACTGTGTAAACGAGAACTGGAAACTGCTGTTTCCCCGGGGCCATGTtgtcttaagagttcatttaa-ctgcaaggaacaaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650002 133 - 8658521 TCAGG-----------------------------------------TCCCTCA-------------------GACACTGGTTACTGGCTGTGTAAACAAGAGCTGGAAGCTGCTGACTGTGTAAACAAGAGCTGGAAGCTGCTGTTTCCCC-GGGCCATG-AGTCTTAAGAGTTCATTGAA-CTGCAAGGAACAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114853694 101 + 124281992 TCA--------------------------------------------CTCTTA-------------------GACACTGGTTA-----------------------------CTGACTGTGCACATGAGAGCTGGAAGCTGCTGTTTCCT-GGGGTCATGTTGTCTT-AGAGTTCACTTAA-CTGCAAGGAACAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 495740 100 - 9212255 TCA-------------------------------------------TCTCTTG-------------------GATACTGGTTA-----------------------------CTGAC--TGCACATGAGAGCTGGAAGCTGCTGTTTCCC-GGGGTCATGTTGTCTT-AGAGTTTACTTAA-CTGCAAGGAACAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2914862 102 + 4466143 TCA-------------------------------------------TCTCTTG-------------------GACACTGGTTA-----------------------------CTGACTGTGCACATGAGAGCTGGAAGCTGCTGTTTCCT-GGGGCCATGTTGTCTT-AGAGTTCACTCAA-CTACAAGGAACAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1617806 102 + 5364348 TCA-------------------------------------------CCTCTTG-------------------GACACTGGTTA-----------------------------CTGACTGTGCACATGAGAGCTGGAAGCTGCTGTTTCCC-GGGGTCATGTTGTCTT-AGAGTTCACTTAA-CTGTAAGGAACAAA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9500459 103 - 31815103 TCAGG-----------------------------------------TCCCTTA-------------------GACGTCGGTTA-----------------------------CTGACTGTGCGAATCATAGCTGGAGACGATTGTTTCC-CGGGG-CATGTTGTCCC-AGAGGCCATTTGA-CTGCAAGGAACAAA i micMur3.chr21 I 391 I 99 s proCoq1.NW_012154285v1 6753565 104 - 9870158 TCAGG-----------------------------------------TCCCTTA-------------------GACTTTGGTTA-----------------------------CTGACTGTGCAAATGGCAGCTGGAAACTACTGTTTCC-CGGGGCCATGTtgtctt-agtggccatttaa-ctgcaaggaacaga i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4339667 105 + 7922563 TCAGG-----------------------------------------TCCCTTA-------------------GACATTGGTTA-----------------------------CTGACTATGCAAACGATAGCTAGAAACTACTATTTTTGTGGGGCCATGTTGCATT-AGAGGCCATTTAA-CTGCAAGGAAAAAA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124832946 40 + 151834684 -----------------------------------------------CCTTTT-------------------GACATT-GTGA-----------------------------CAGG-----------------------------------------ACACTATCTC-AGGGATCCTC------------------ i mm10.chr5 C 0 C 0 s canFam3.chr26 33188276 101 - 38964690 TCAGG-----------------------------------------TCCCTTT-------------------AGCATTGGTGA-----------------------------CTGGTGCCGCAGAC--TGGCTGGGAGCTGCCGTTTCCC-AGGGCTGTGCC-CCAT-AGAGGACCTTTCA-CTGTGAGCAGCAAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 877424 166 - 1116856 TCAGGACCCAGGGACGTTGGTTAtttttgttttctttttttttttttcctttgtctttttatttattttGTTGACATTGGTTA-----------------------------TTGACTCTATAAATTATAGCTGGAAACCACTGTCACCTTGGGGCCTTGTCATCTT-AGAGGCCATTTTATCTACAAGGGACAAA i dasNov3.JH568189 C 0 C 0 a score=35473.000000 s hg38.chr12_KI270834v1_alt 107572 3 + 119498 agc s panTro5.chr12 127393186 3 + 137163284 agc i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743479 3 + 135337776 agc i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257034 3 - 8369578 agc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915119 3 + 106955855 agc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030199 3 + 133663169 AGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278392 3 + 137757926 AGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10676917 3 - 16319837 AGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12300850 3 + 20526591 agc i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272256 3 + 128539186 AGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 623765 3 + 6255621 agc i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650135 3 - 8658521 AGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114853795 3 + 124281992 ATC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 495840 3 - 9212255 ATC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2914964 3 + 4466143 ATC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1617908 3 + 5364348 ATC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6753669 3 - 9870158 agc i proCoq1.NW_012154285v1 C 0 I 235 s otoGar3.GL873618 4339772 3 + 7922563 TAC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33188377 3 - 38964690 AGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 877590 3 - 1116856 AGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9500562 99 - 31815103 I e mm10.chr5 124832986 0 + 151834684 C a score=572163.000000 s hg38.chr12_KI270834v1_alt 107575 77 + 119498 tcttttgagatggcttaaggactggggacttacggtaaagatgcagggactct-ccaggtctca------------------gtggcagg------GG-------------------AGGT s panTro5.chr12 127393189 77 + 137163284 tcttttgagatggcttaaggactggggacttatggtaaagatgcagggactct-ccaggtctca------------------gtggcagg------GG-------------------AGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743482 77 + 135337776 tcttttgagatggcttaaggactggggacttatggtaaagatgcagggactct-ccaggtctca------------------gtggcagg------GG-------------------AGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257037 77 - 8369578 tcttttgagatggcttaaggactggggacttatggtaaagatgcagggactct-ccaggtctca------------------gtggcagg------GG-------------------AGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915122 77 + 106955855 tcttgtgagatggcttaaggagtggggacttatggtaaagatgtagggactct-ccaggtctca------------------gtgtcagg------gg-------------------aagg i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030202 76 + 133663169 TCTTTTGAGATGGCTTAAGGAGTGGGGACTTACAGGAAAGCTGTAGGGACTCT-GCGGCTCTCA------------------GTGGCGGG------G--------------------AGCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278395 76 + 137757926 TCTTTTGAGATGGCTTAAGGAGTGGGGACTTACAGGAAAGATGTAGGGACTCT-GCGGCTCTCA------------------GTGGCGGG------G--------------------AGCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10676920 76 - 16319837 TCTTTTGAGATGGCTTAAGGAGTGGGGACTTACAGGAAAGATGTAGGGACTCT-GCAGCTCTCA------------------GTGGCGGG------G--------------------AGCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12300853 77 + 20526591 tcttttgagatggcttaaggagtggggacttacagtaaagatgtagggactct-ccagctctca------------------gtggcggg------gc-------------------agct i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272259 77 + 128539186 TCTTTTGAGATGGCTTAAGGAGTGGGGACTTACAGTAAAGATGTAGGGACTCT-CCAGCTCTCA------------------GTGGCGGG------GG-------------------AGCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 623768 77 + 6255621 tcttttgagatggcttaaggagtggggacttacagtaaagatgtagggactct-ccagctctca------------------gtggcggg------gc-------------------agct i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650138 76 - 8658521 TCTTTGGAGATGGCTTAAGGAGTGGGGACTTACAGTAAAGATGCAGGGACTCT-CCAGCTCTCA------------------GTGGCGGG------G--------------------AGCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114853798 63 + 124281992 TCTTTTGAGATGGCC-----AGTG----------ATAAAGATGTAGGGACTCTCCCAGGTCCCA------------------ATGGCAGG------GG-------------------AGCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 495843 63 - 9212255 TCTTTTGAGATGGCT-----AGTG----------GTAAAGATGTAGGGACTCTCCCAGGTCCCG------------------ATGGCAGG------GG-------------------AGCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2914967 63 + 4466143 TCTTTTGAGATGGCT-----AGTG----------GTAAAGATGTAGGGACTCTCCCAGGTCCCA------------------GTGGCAGG------GG-------------------ATCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1617911 63 + 5364348 TCTTTTGAGATGGCT-----AGTG----------GTAAAGATGAAGGGACTCCCCCAGGTCCCA------------------GTGGCAGG------GG-------------------AGCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4339775 81 + 7922563 --TCCCGAGCTAGTTTAAGGAGTGTGTATTTTCAGCAAAGCT-TCGGGCCTCTCATAGGTCCCA------------------GCAACAGGCGTCCAGC-------------------AGGT i otoGar3.GL873618 C 0 I 11 s mm10.chr5 124832986 55 + 151834684 -------AGATAGGT------------CCTACTGGTGAGCATTCAGATGCCAT-TCTGG--CCG------------------AGGGCAGG------AG-------------------GAT- i mm10.chr5 C 0 C 0 s canFam3.chr26 33188380 92 - 38964690 --CCTTGAGTGAGCTT--GGAGTTGGGGTTCATGGTGGAGATTCAGGGATGCTCACTGTTCCCATAGCACAAGGCCAGCGAGATTTCAGA------GG-------------------AACT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 877593 95 - 1116856 CCTCCTGAACTAGCTTAAGAAGAG-GGTTTTTTGGTGAGAATTTGGGCATCCT-CATGGTCCTG------------------GTTGTGGA------AGTCCCGCTCGATCTCCGAGTAACT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9500562 99 - 31815103 I e proCoq1.NW_012154285v1 6753672 235 - 9870158 I a score=356954.000000 s hg38.chr12_KI270834v1_alt 107652 40 + 119498 GGCAGGT-----------------------GTCCGGGCCACCACTCTCTCTGGGGCC-------------------------------------------------------------------------------ACAGGA----------------- s panTro5.chr12 127393266 40 + 137163284 GGCAGGT-----------------------GTCCGGGCCACCACTCTCTCTGGGGCC-------------------------------------------------------------------------------GCAGGA----------------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743559 40 + 135337776 GGCAGGT-----------------------GTCCGGGCCACCACTCTCTCTGGGGCC-------------------------------------------------------------------------------GCAGGA----------------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257114 39 - 8369578 GGCAGGT-----------------------GTCCGGGCCACCAC-CTCTCTGGGGCC-------------------------------------------------------------------------------ACAGGA----------------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915199 40 + 106955855 ggcaggt-----------------------gtccgggccgccactctctctggggcc-------------------------------------------------------------------------------acagga----------------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030278 39 + 133663169 GGC-GGT-----------------------GTCTGGGCTGCCACTCTCTCTGGGGCC-------------------------------------------------------------------------------ACAGGC----------------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278471 39 + 137757926 GGC-GGT-----------------------GTCTGGGCTGCCACTCTCTCTGGGGCC-------------------------------------------------------------------------------ACAGGC----------------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10676996 39 - 16319837 GGC-GGT-----------------------GTCTGGGCTGCCACTCTCTCTGGGGCC-------------------------------------------------------------------------------ACAGGC----------------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12300930 40 + 20526591 ggcaggt-----------------------gtctgggccgccactctctctggggcc-------------------------------------------------------------------------------acaggc----------------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272336 40 + 128539186 GGCAGAT-----------------------GTCTGGGCTGCCACTCTCTCTGGGGCC-------------------------------------------------------------------------------ACAGGC----------------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 623845 40 + 6255621 ggcaggt-----------------------gtctgggctgccactctctctggggcc-------------------------------------------------------------------------------acaggc----------------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650214 40 - 8658521 GGCAGGT-----------------------GTCTGGGCTGCCACTCTCTCTGGGGCC-------------------------------------------------------------------------------ACAGGC----------------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114853861 40 + 124281992 GGCGGGT-----------------------GTCCGGGCTGCTGCCCTCTCTGGGGCC-------------------------------------------------------------------------------ACATGA----------------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 495906 23 - 9212255 GGCAGGT-----------------------GGCC-----------------GGGGCC-------------------------------------------------------------------------------ACATGA----------------- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2915030 40 + 4466143 GGCAGGT-----------------------GTCCCGGCTGCTGCCCTCTCTGGGGCC-------------------------------------------------------------------------------ACATGA----------------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1617974 40 + 5364348 GGCAGGT-----------------------GTCCGGGCTGCTGCCCTCTCTGGGGCC-------------------------------------------------------------------------------ACATGA----------------- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9500661 40 - 31815103 GGCAAGT-----------------------GTCCGGGCTGCCACTCACTCTGGGGCC-------------------------------------------------------------------------------AAAGGA----------------- i micMur3.chr21 I 99 I 322 s otoGar3.GL873618 4339867 38 + 7922563 GGCAAGT-----------------------GTCCAGGCTGCCACT--CTCTGGGGCT-------------------------------------------------------------------------------AAGTGA----------------- i otoGar3.GL873618 I 11 C 0 s mm10.chr5 124833041 53 + 151834684 GATAGGTTTTGCCTTTggtgagagtgctcagtcctaaccacta----------gacc-------------------------------------------------------------------------------accggg----------------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33188472 38 - 38964690 AGCAGGT-----------------------ATCAGGGCCACGACACTCTCTGGGCGA-------------------------------------------------------------------------------GCGA------------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 877688 135 - 1116856 GGCAGGT-----------------------AGCTGGACT-CCTTTCTTTCTGGGGCCAGTTTCCTCTTCTCTGCATGTCTGCTGTGCTCGCCTCCCCACTGACCACTTTCTCAGCAAGATTTCTGCAGAGAAGTTTACAGGGGATTTGGGGCTGTCACA i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6753672 235 - 9870158 I a score=689299.000000 s hg38.chr12_KI270834v1_alt 107692 91 + 119498 --GTGTGTTCC-------------TCTCTTTGCAC------------------ATCTGCTGGGT---------------------------------------------------CCTCCTCCCCGGAGACCACTT---TCTCTGTGAGGCTTCGACTTCCTGC--------TCCCCAGCCACTTC s panTro5.chr12 127393306 91 + 137163284 --GTGTGTTCC-------------TCTCTTTGCAC------------------GTCTGCTGGGT---------------------------------------------------CCTCCTCCCCGGAGACCACTT---TCTCTGTGAGGCTTCGACTTCCTGC--------TCCCCAGCCACTTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743599 91 + 135337776 --GTGTGTTCC-------------TCTCTTTGCAC------------------GTCTGCTGGGT---------------------------------------------------CCTCCTCCCCGGAGACCACTT---TCTCTGTGAGGCTTCGACTTCCTGC--------TCCCCAGCCACTTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257153 90 - 8369578 --GTGTGTTCC-------------TCTCTTTCCAC------------------GTCTGCTGGGT---------------------------------------------------CCTCCTCCCCGGAGACCACTT---TCTCTGTGAGGCTTCGACTTCCTGC--------T-TCCAGCCACTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915239 96 + 106955855 --gtgtgctcctc---t-----cttctctttgcac------------------gtctgctgggt---------------------------------------------------cctccttcccagagaccactt---tctctgTGAGGCCTCGACTTCCTGC--------TCCCCAGCCACTTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030317 99 + 133663169 --GTGTGCTCCTGTCTT-----CTCCCCTTTCTAT------------------GTCTGCTGGGT---------------------------------------------------CCTCCTCCCCGGGGGCCGCTT---TCTCTGTGACGCTTCTACTTCCTGC--------TCCCCAGCCACTTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278510 99 + 137757926 --GTGTGCTCCTGTCTT-----CTCCCCTTTCTAT------------------GTCTGCTGGGT---------------------------------------------------CCTCCTCCCTGGGGGCCACTT---TCTCTGTGACGCTTCTACTTCCTGC--------TCCCCAGCCACTTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10677035 99 - 16319837 --GTGTGCCCCTCTCTT-----CTCCCCTTTGGAT------------------GTCTGCTGGGT---------------------------------------------------CCTCCTCCCCGGGGACCACTT---TCTCTGTGAGGCTTCTACTTCCTGC--------TCCCCAGCCACTTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12300970 99 + 20526591 --gtgtgctcctctctt-----ctcctctttttat------------------gtctgctgggt---------------------------------------------------cctcctccccggggaccactt---tctctgTGAGGCTTCTACTTCCTGC--------TCCCCAGCCACTTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272376 94 + 128539186 --GTGTGCTCC-----T-----CTTTTCTTTGTAT------------------GTCTGCTGGGT---------------------------------------------------CTTCCTCCCCGGGGACCACTT---TCTCTGTGAGGCTTCTACTTCCTGC--------TCCCCAGCCACTTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 623885 99 + 6255621 --gtgcgctcctcgctt-----ctcctctttgtat------------------gtctgctgggt---------------------------------------------------cctcctccccggggaccactt---tctctgTGAGGCTTCTACTTCCTGC--------TCCCCAGCCACTTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650254 99 - 8658521 --GTGCGCTCCTCTCTT-----CTCCTCTTCGTAT------------------GTCTGCTGGGT---------------------------------------------------CCTCCTCCCCGGGGACCACTT---TCTCTGTGAGGCTTCCACTTCCTGC--------TCCCCGGCCACTTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114853901 86 + 124281992 --GCGTACTCC-------------TCTCTCTGCAC------------------ATCTTCTGGGT---------------------------------------------------CCTCCT-CTTGGAGACCACTT-------TGTGAGGCTTTGACTTCCTGC--------TCGGAAGCCACTTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 495929 87 - 9212255 --GCGTGCTCC-------------TCTCTCTGCAC------------------GTCTTCTGGGT---------------------------------------------------TCTCCTCCCTGGAGACCACTT-------TGTGAGGCTTTGACTTCCTGC--------TCCGAAGCCACTTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2915070 87 + 4466143 --GCATGCTCC-------------TCTCTCTGCAC------------------GTCTTCTGGGT---------------------------------------------------CCTCCTCCCTGGAGACCACTT-------TGTGAGGCTTCGAATTCCTGC--------TCCGAAGCCACTTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1618014 87 + 5364348 --GCGTGCTCC-------------TCTCTCTGCAC------------------GTCTTCTGGGT---------------------------------------------------CCTCCTCCCTGGAGACCACTT-------TGTGAGGCTTCGACTTCCTCC--------TTGGAAGCCACTTC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4339905 92 + 7922563 --TTGTCCTCTTTTCTG-----CTGATCTCTGCAC------------------ATCTGCTGCAC---------------------------------------------------CCTTTTCCCCAGAGATGACTC---CCTCTGTGAGGCTTCAGCTTCTAG--------------AGCCACTT- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124833094 68 + 151834684 --aaGTGTTGG------------TGCTCTTGGC----------------------TTAGGGGTT---------------------------------------------------TCTGCATACCAGAGCTCATATTCCTCTTGGTCATGCCTTT------------------------------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33188510 90 - 38964690 --CTGTCCTCT------------GCTACTGTGAGA------------------GTCTG-TGTGT---------------------------------------------------TCTGTTCCCCAGACACCATTT---TCTCTGCCAGGCTTTAACTCTCTAC--------TCCCACTCCCTCT- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 877823 178 - 1116856 GTGCCTGCTCTGACCCTGGTGCTACTTGTCTGCATAGCCAGAGTGCCAAGGTGGTCTGTTGGTTCTGTGCCCTTTTTTTTttttttttaaagatttatttatttatttaatttccccccctcccctggttgtctgt---tcttggtg-----tctatttgctgcgtcttgtttctttgtccgcttc i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9500701 322 - 31815103 I e proCoq1.NW_012154285v1 6753672 235 - 9870158 I a score=471344.000000 s hg38.chr12_KI270834v1_alt 107783 35 + 119498 ----------GGCTCACAGGGTAGCTGGGGTTGCCAT----------GGTGCCCA s panTro5.chr12 127393397 35 + 137163284 ----------GGCTCACAGGGTAGCTGGGGTTGCCAT----------GGTGCCCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743690 35 + 135337776 ----------GGCTCACAGGGTAGCTGGGGTTGCCAT----------GGTGCCCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257243 35 - 8369578 ----------GGCTCACAGGGTAGCTGGGGTCGCCAT----------GGTGCCCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915335 35 + 106955855 ----------GGCGCACAGGGTAGCTGGGGTTGCCAT----------GGTGCCCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030416 35 + 133663169 ----------GGCTCCCAGGGTAGCCGGGGTTGCCAT----------GGTGCCCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278609 35 + 137757926 ----------GGCTCCCAGGGTAGCCGGGGTTGCCAT----------GGTGCCCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10677134 35 - 16319837 ----------GGCTCCCAGGGTAGCCGGGGTTGCCAT----------GGTGCCCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12301069 35 + 20526591 ----------GGCTCCCAGGGTAGCCGGGGTTGCCAT----------GGTGCCCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272470 35 + 128539186 ----------GGCTCCCAGGGTAGCCGGGGTTGCCAT----------GGTGCCCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 623984 35 + 6255621 ----------GGCTCCCAGGGTAGCCGGGGTTGCCAT----------GGTGCCCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650353 35 - 8658521 ----------GGCTCACAGGGTAGCCGGGGTTGCCAT----------GGTGCCCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114853987 35 + 124281992 ----------AGCTCACAGTGTAGCTGGGGTTGCCAT----------TGTGCCCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 496016 35 - 9212255 ----------AGCTCACAGTGTAGCTGGGGTTGCCAT----------GGTGCCCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2915157 35 + 4466143 ----------GGCTCACAGTGTAGCTGGGGTTGCCAT----------GGTGCCCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1618101 35 + 5364348 ----------GGCTCGCAGTGTAGCTGGGGTTGCCAT----------GGTGCCCA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6753907 35 - 9870158 ----------GGCTCACAGGGGAGCTGGGGTTGCCAT----------GGTGCCCA i proCoq1.NW_012154285v1 I 235 I 163 s otoGar3.GL873618 4339997 35 + 7922563 ----------AGCTCACAGGGGAGCTAGGGTTGCCAT----------GGTGCCCA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124833162 24 + 151834684 ----------GGCTCA----------GAGGATGCTGT-----------GTGCTTG i mm10.chr5 C 0 C 0 s canFam3.chr26 33188600 35 - 38964690 ----------GGCTCAGGAGGGATTTGGGATTGCTGT----------GGTACCAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 878001 54 - 1116856 tgttggcgtcggcacgggaagt-gtgggcggcgccattcctgggcaggctgctct i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9500701 322 - 31815103 I a score=55373.000000 s hg38.chr12_KI270834v1_alt 107818 4 + 119498 TTCT s panTro5.chr12 127393432 4 + 137163284 TTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743725 4 + 135337776 TTCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257278 4 - 8369578 TTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915370 4 + 106955855 TTCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030451 4 + 133663169 TTCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278644 4 + 137757926 TTCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10677169 4 - 16319837 TTCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12301104 4 + 20526591 TTCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272505 4 + 128539186 TTCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 624019 4 + 6255621 TTCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650388 4 - 8658521 TTCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114854022 4 + 124281992 TTCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 496051 4 - 9212255 TTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2915192 4 + 4466143 TTCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1618136 4 + 5364348 TTCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4340032 2 + 7922563 --CT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33188635 2 - 38964690 --CT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 878055 4 - 1116856 ttct i dasNov3.JH568189 C 0 I 133 e micMur3.chr21 9500701 322 - 31815103 I e mm10.chr5 124833186 0 + 151834684 C e proCoq1.NW_012154285v1 6753942 163 - 9870158 I a score=203863.000000 s hg38.chr12_KI270834v1_alt 107822 29 + 119498 GACTCTGGGACCATGCATCTTTCTAGCCT s panTro5.chr12 127393436 29 + 137163284 GACTCTGGGACCATGCATCTTTCTAGCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743729 29 + 135337776 GACTCTGGGACCATGCGTCTTTCTAGCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257282 29 - 8369578 GACTCTGGGACCATGCATCTTTCTAGCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915374 29 + 106955855 GACTCTGGGGCCATGCATCTTTCTAGCCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030455 29 + 133663169 GACTCTGGGGCCATGCATCTTCCTAGCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278648 29 + 137757926 GACTCTGGGGCCATGCATCTTCCTAGCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10677173 29 - 16319837 GACTCTGGGGCCATGCATCTTCCTAGCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12301108 29 + 20526591 GACTCTGGTGCCATGCATCTTCCTAGCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272509 29 + 128539186 GCCTCTGGTGCCATGCATCTTCCTAGCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 624023 29 + 6255621 GACTCTGGTGCCATGCATCTTCCTAGCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650392 29 - 8658521 GACTCTGGTGCCATGCATCTTCCTAGCCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114854026 17 + 124281992 GACTCTGGTAGC------------AGCCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 496055 17 - 9212255 GACTCTGGTAGC------------AGCCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2915196 17 + 4466143 GACTCTGGTAGC------------AGCCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1618140 17 + 5364348 AACTCTGGTAGC------------AGCCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4340034 29 + 7922563 GACTCCAGTGCCACTTGTCTTTGTAGCCT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124833186 4 + 151834684 -------------------------TCCT i mm10.chr5 C 0 C 0 s canFam3.chr26 33188637 26 - 38964690 GACT--GGTGCT-TCTGTCTTTATAACCT i canFam3.chr26 C 0 C 0 e micMur3.chr21 9500701 322 - 31815103 I e proCoq1.NW_012154285v1 6753942 163 - 9870158 I e dasNov3.JH568189 878059 133 - 1116856 I a score=1077366.000000 s hg38.chr12_KI270834v1_alt 107851 114 + 119498 G---GGGGCCCAGGGT----------------------------------------------GGTCTAAGTCCGT-------------GGGCCTTGATGCCCCAGGAATGAGGATTCCTG---------------GGGGAGAGGCC--ACCGCCCCA---------------------CACCCATTT--------CTCTG-GGCCATGGGG-------CAGGGCCACAGG s panTro5.chr12 127393465 103 + 137163284 G---GGGGCCCAGGGT----------------------------------------------GGTCTAAGTCCGT-------------GGGCCTTGATGCCTC----------ATTCCTG---------------GGGGAGAGGCC--ACCGCCCCA---------------------CACCCATTT--------CTCTG-GGCCGTGGCG--------AGGGCCACAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743758 103 + 135337776 G---GGGGCCCAGGGT----------------------------------------------GGTCTAAGTCCGT-------------GGGCCTTGATGCCTC----------ATTCCTG---------------GGGGAGAGGCC--ACCGCCCCA---------------------CACCCATTT--------CTCTG-GGCCATGGCG--------AGGGCCACAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257311 104 - 8369578 G---GGGGCCCAGGGT----------------------------------------------GGTCTAAGTCCGT-------------GGGCCTTGATGCCTC----------ATTCCTG---------------GGGGAGAGGCC--ACCGCCCCA---------------------CACCCATTT--------CTCTG-GGCCATGGGG-------GAGGGCCACAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915403 104 + 106955855 G---GGGGCCCAGGGT----------------------------------------------GGTTTAAGTCCGT-------------GGGCCTTGATGCCTC----------ATTCCTG---------------GGGGAGAGGCC--ACTGCCCCA---------------------CACCCACTT--------CTCTG-GGCCATGGGG-------GAGGGCCATAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030484 104 + 133663169 G---GGGGCCCAGGGT----------------------------------------------GGTCTAAGTCCGT-------------CGACCTTGATGCCTC----------ATTCCTG---------------GGGGAGAGGCC--ACCGCCCCG---------------------CACCCACTT--------CTCTG-GGCCCTGGGG-------GAGGGCCACGGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278677 104 + 137757926 G---GGGGCCCAGGGT----------------------------------------------GGTCTAAGTCCGT-------------CGACCTTGATGCCTC----------ATTCCTG---------------GGGGAGAGGCC--ACCGCCCCG---------------------CACCCACTT--------CTCTG-GGCCCTGGGG-------GAGGGCCACGGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10677202 104 - 16319837 G---GGGGCCCAGGGT----------------------------------------------GGTCTAAGTCCGT-------------CGACCTTGATGCCTC----------ATTCCTG---------------GGGGAGAGGCC--ACCGCCCCG---------------------CACCCACTT--------CTCTG-GGCCCTGGGG-------GAGGACCACGGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12301137 104 + 20526591 G---GGGGCCCAGGGT----------------------------------------------GGTCTAAGTCCGT-------------CGACCTTGATGCCTC----------ATTCCTG---------------GGGGAGAGGCC--ACCGCCCCG---------------------CACCCACTT--------CTCTG-GGCCCTGGGG-------GAGGGCCACGGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272538 104 + 128539186 G---GGGGCCCAGGGT----------------------------------------------GGTCTAAGTCCGT-------------TGACCTTGATGCCTC----------ATTCCTG---------------GGGGAGAGGCC--ACCGCCCCG---------------------CACCCACTT--------CTCTG-GGCCATGGGG-------GAGGGCCACGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 624052 104 + 6255621 G---GGGGCCCAGGGT----------------------------------------------GGTCTAAGTCCGT-------------CGACCTTGATGCCTC----------ATTCCTG---------------GGGGAGAGGCC--ACCGCCCCG---------------------CACCCACTT--------CTCTG-GGCCCTGGGG-------GAGGGCCACGGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650421 104 - 8658521 G---GGGGCCCAGGGT----------------------------------------------GGTCTAAGTCCAT-------------CGACCTTGGTGCCTC----------ATTCCTG---------------GGGGAGAGGCC--ACCGCCCCG---------------------CACCCACTT--------CTCTG-GGCCATGGGG-------GAGGGCCACGGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114854043 104 + 124281992 C---AGGGCCCAGGGT----------------------------------------------GGTCTAAGTGCGT-------------GTGCTCTGATGCCTC----------ATTCCTG---------------GGGGAGAGGCC--ACCACCCCA---------------------CACCCACTT--------CTCTG-GGCCATGGAG-------GAGGGCTATGGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 496072 107 - 9212255 TGGGGGGGCCCAGGGT----------------------------------------------GGTCTAAGTGCAT-------------GTGCCTTGATGCCTC----------ATTCTTG---------------GGGGAGAGGCC--ACCACCCCA---------------------CACCCACTT--------CTCTG-GGCCATAGAG-------GAGGGCTATGGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2915213 104 + 4466143 C---AGGGCCCAGGGT----------------------------------------------GGTCTAAGTGCGT-------------GTGCCTTGATGCCTC----------ATTCCTG---------------GGGGAGAGGCC--ACTACACAG---------------------CACCCACTT--------CTCTG-GGCCACGGAG-------GAGGGCTATGGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1618157 104 + 5364348 C---GGGGCCCAGGGT----------------------------------------------GGTCTAAGTGTGT-------------ATGCCTTGATGCCTC----------ATTCCTG---------------GGGGAGAGGCC--ACCACCCCG---------------------CACCCACTT--------CTCTG-GGCCACGGGG-------GAGGGCTATGGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4340063 117 + 7922563 G---AGGGCCCA-AGT----------------------------------------------GTTCTAAGTCTGT--------------AGCTTTGAAGCCAC----------ATACCTGTGGAGAGGATCTGCTGGGGAGAGGGG--ACCATCCCT---------------------CATCCATGT--------CTTTG-GGACCATGAG-------GGAGGTTATGGG i otoGar3.GL873618 C 0 I 9 s mm10.chr5 124833190 74 + 151834684 G---AG-----------------------------------------------------------------CTGT-------------GTGTCCTGAAGCCAG----------AGTCCAG---------------AACAAGAGGTG--CCCATGCAG----------------------ACCCACTT--------CCCTG-GAGCCTTTTG-------TC---------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33188663 115 - 38964690 G---GGGGCCCA-AGC----------------------------------------------GGTCTAGGTCTGT-------------GTGCCTTGAAGCAG-----------ATTTCTG-----------------TGAGAGGCA--ACCACCCCT---------------------TGTCTCCTTGACCAAGGCTGTG-GGTGGCGGGGAGCTCCTGAGGTCTACAGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 878192 187 - 1116856 g---gaggcccggggtttgaactgcggacctcccatatggtagacggacgccctaaccactgggccaaagtccgtttcccAGGTTCTGTGCCCTTGATGCCAC----------ACTCCTG---------------GGGAGAAGACCTGACAAGCCCAGCTGGGGAGAGGTGGTGCCCTAGTCCACTT--------AACTGTGGCTGTGTGG-------GAAGGACATGTG i dasNov3.JH568189 I 133 C 0 e micMur3.chr21 9500701 322 - 31815103 I e proCoq1.NW_012154285v1 6753942 163 - 9870158 I a score=319501.000000 s hg38.chr12_KI270834v1_alt 107965 28 + 119498 ---------GTCTCCTGTCTG---GGCT--------GCTCCTCCACAG s panTro5.chr12 127393568 26 + 137163284 ---------G--TCCTGTCTG---GGCT--------GCTCCTCCACAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743861 26 + 135337776 ---------G--TCCTGTCTG---GGCT--------GCTCCTCCACAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257415 27 - 8369578 ---------GT-TCCTGTCTG---GGCT--------GCTCCTCCACAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915507 28 + 106955855 ---------GTCTCCTATCTG---GGCT--------GCTCCTCCACAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030588 28 + 133663169 ---------GTGTCCTGTCTG---AGCC--------GTTCCTCCACAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278781 28 + 137757926 ---------GTGTCCTGTCTG---AGCC--------GCTCCTCCACAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10677306 28 - 16319837 ---------GTGTCCTGTCTG---AGCC--------GCTCCTCCACAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12301241 28 + 20526591 ---------GTGTCCTGTCTG---AGTC--------GCTCCTCCACAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272642 28 + 128539186 ---------GTGTCCTGTCTG---AGCC--------GCTCCTCCACAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 624156 28 + 6255621 ---------GTGTCCTGTCTG---AGTC--------GCTCCTCCACAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650525 28 - 8658521 ---------GTGTCCTGTCTG---AGCC--------GCTCCTCCACAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114854147 28 + 124281992 ---------GTCTCCTGCCTG---GGCT--------GCTCCTCCACAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 496179 28 - 9212255 ---------GTCTGCTGCCTG---GGCT--------GCTCCTCTACAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2915317 28 + 4466143 ---------GTCTCCTGCCTG---GGCT--------GCTCCTCCACAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1618261 28 + 5364348 ---------GTCTCCTGCCTG---GGCT--------GCTCCTCCATAG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6754105 28 - 9870158 ---------GTCTCCTGTCTG---GGCT--------GTCCCCCTAGAA i proCoq1.NW_012154285v1 I 163 C 0 s otoGar3.GL873618 4340189 27 + 7922563 ---------GTCTCCTGTCTG---GGCT--------GTCCCTCTAAA- i otoGar3.GL873618 I 9 C 0 s mm10.chr5 124833264 30 + 151834684 ----------TCTCCTGTCTGTCTAGCT--------AGCCTTCTACTT i mm10.chr5 C 0 C 0 s canFam3.chr26 33188778 28 - 38964690 ---------GTGTCCTTTCTG---GGAT--------GTCCCTCCATAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 878379 45 - 1116856 GTCTGTGGAGGGTCCCGTGCG---GGCTCTGGGTCAGGTTCTCAAAGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9500701 322 - 31815103 I a score=631245.000000 s hg38.chr12_KI270834v1_alt 107993 42 + 119498 AGGGAAGGTGGGCAGGACAGAAATG-------------CTGGAGAAGGGCCTGGG s panTro5.chr12 127393594 42 + 137163284 AGGGAAGGTGGGCAGGACAGAAATG-------------CTGGAGAAGGGCCTGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743887 42 + 135337776 AGGGAAGGTGGGCAGGACAGAAATG-------------CTGGAGAAGGGCCTGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257442 42 - 8369578 AGGGAAGGTGGGCAGGACAGAAATG-------------CTGGAGAAGGGCCTGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915535 42 + 106955855 AGGGAAGGTGGGCAGGACAGAAGTG-------------CTGGAGAAGGGCCTGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030616 42 + 133663169 AGGGAAGGTGGGCAGGACAGAAGCG-------------CTGGAGAAGGGCCTGGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278809 42 + 137757926 AGGGAAGGTGGGCAGGACAGAAGCG-------------CTGGAGAAGGACCTGGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10677334 42 - 16319837 AGGGAAGGTGGGCAGGACAGAAGCG-------------CTGGAGAAGGGCCTGGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12301269 42 + 20526591 AGGGAAGGTGGGCAGGACAGAAGCG-------------CTGGAGAAGGGCCTGGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272670 42 + 128539186 AAGGAAGGTGGGCAGGACAGAAGTG-------------CTGGAAAAGGGCCTGGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 624184 42 + 6255621 AGGGAAGGTGGGCAGGACAGAAGCG-------------CTGGAGAAGGGCCTGGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650553 42 - 8658521 AGGGAAGGTGGGCAGAACAGAAGCA-------------CTGGAGGAGGGCCTGGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114854175 42 + 124281992 AGGGGCGGTGGGCAGGACAGAAGCG-------------CTGGAGGAGGGCCTGGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 496207 42 - 9212255 AGGGACGGCGGGCAGGACAGAAGCG-------------CTGGAGGAGGGCCTGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2915345 42 + 4466143 AGGGAGGGTGGGCAGGACAGAAGTG-------------CTGGAAGAGGGCCTGGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1618289 42 + 5364348 AGGGACGGTGGGCAGGACAGAAGTG-------------CTGGAGGAGGGCCTGGG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9501023 42 - 31815103 AGGGAAGGTGGGCAGGACAGAAATG-------------ATGGAGAAAGGCCTGGG i micMur3.chr21 I 322 I 106 s proCoq1.NW_012154285v1 6754133 42 - 9870158 GGGGAAGATGGGCAGGACAGAAATG-------------ATGGAGAGAGGCCTGGG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4340216 39 + 7922563 AGGGAAAGTGGGCAGAACAGAA----------------ATGGAGAAAGGCCTGGG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124833294 29 + 151834684 -GGGAAGCCGGGCAGGGTTG-AGTT-------------CTGGAG----------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33188806 38 - 38964690 ----AAGAAAGGACGACCACCTCTT-------------CTGGAAAATAACCTGGG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 878424 55 - 1116856 GAGCATTGTGGGCAGGGCAGAAATGGTGGCCACCTCTTATGGAAAAAGGCCCAGA i dasNov3.JH568189 C 0 C 0 a score=44061.000000 s hg38.chr12_KI270834v1_alt 108035 3 + 119498 CTG-- s panTro5.chr12 127393636 3 + 137163284 CTG-- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743929 3 + 135337776 CTG-- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257484 3 - 8369578 CTG-- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915577 3 + 106955855 CTG-- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030658 3 + 133663169 CTG-- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278851 3 + 137757926 CTG-- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10677376 3 - 16319837 CTG-- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12301311 3 + 20526591 CTG-- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272712 3 + 128539186 CTG-- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 624226 3 + 6255621 CTG-- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650595 3 - 8658521 CTG-- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114854217 3 + 124281992 CTG-- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 496249 3 - 9212255 CTG-- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2915387 3 + 4466143 CTG-- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1618331 3 + 5364348 CTG-- i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6754175 3 - 9870158 CTG-- i proCoq1.NW_012154285v1 C 0 I 100 s otoGar3.GL873618 4340255 3 + 7922563 CTG-- i otoGar3.GL873618 C 0 I 2 s canFam3.chr26 33188844 3 - 38964690 CTG-- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 878479 5 - 1116856 CTATG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9501065 106 - 31815103 I e mm10.chr5 124833323 0 + 151834684 C a score=744891.000000 s hg38.chr12_KI270834v1_alt 108038 105 + 119498 T-CCCCAA-TGCGCTGGGGAGG--AGGCCAGCCAGTGGCCTGTGTGTCG---CTGTGTGTGCGCCTGATAG-------AGCCACTCCG-TGGCA-G-GCTGTGCATGC-TCCAGTTGTATCCA- s panTro5.chr12 127393639 105 + 137163284 T-CCCCAA-TGCGCTGGGGAGG--AGGCCAGCCAGTGGCCTGTGTGTCG---CTGTGTGTGCGCCTGATAG-------AGCCACTCCG-TGGCA-G-GCTGTGCATGT-TCCAGTTGTATCCA- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125743932 105 + 135337776 T-CCCCAA-CGCGCTGGGGAGG--AGGCCAGCCAGTGGCCTGTGTGTCG---CTGTGTGTGCGCCTGATAG-------AGCCACTCCG-TGGCA-G-GCTGTGCATGT-TCCAGTTGTATCCA- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257487 105 - 8369578 T-CCCCAA-TGCGCTGGGGAGG--AGGCCAGCCAGTGGCCTGTGTGTCG---CTGCGTGTGCGCCTGATAG-------AGCCACTCCG-TGGCA-G-GCTGTGCATGC-TCCAGTTGTATCCA- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915580 104 + 106955855 T-CCCCAA--GCGCTGGGGAGG--AGGCCAGCCAGTGGCGTGTGTGTCG---CTGTGTGTGCGCCTGATAG-------AGCCACTCCA-TGGCA-G-GCTGTGCATGC-TCTGGTTGTATCCA- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030661 92 + 133663169 T-CCCCAG-GGCGCTGGGGAGG--AGGCCAACCAGTGGCTTGTGTGTGT---CGCTGTGTGCGCCTGA---------------------TGGCA-G-GCTGTGGATGC-TCCGGTTGTGTCCA- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278854 92 + 137757926 T-CCCCAG-GGCGCTGGGGAGG--AGGCCAACCAGTGGCTTGTGTGTGT---CGCTGTGTGCGCCTGA---------------------TGGCA-G-GCTGTGGATGC-TCCGGTCGTATCCA- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10677379 92 - 16319837 T-CCCCAG-GGCGCTGGGGAGG--AGGCCAACCAGTGGCTTGTGTGTGT---CGCTGTGTGCGCCTGA---------------------TGGCA-G-GCTGTGGATGC-TCCGGTTGTATCCA- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12301314 92 + 20526591 T-CCCCAG-GGCGCTGGGGAGG--AGGCCAGCCAGTGGCTTGTGTGTGT---CGCTGTGTGCACCTGA---------------------TGGCA-G-GCTGTGGATGC-TCCGGTTGTATCCA- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272715 92 + 128539186 T-CCCCAG-GGCGCTGGGGAGG--AGGCCAGCCAGTGGCTTGTGTGTGT---CGCTGTGTGTACCTGA---------------------TGGCA-G-GCTGTGGATGC-TCCAGTTGTATCCA- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 624229 92 + 6255621 T-CCCCAG-GGCGCTGGGGAGG--AGGCCAGCCAGTGGCTTGTGTGTGT---CGCTGTGTGCGCCTGA---------------------TGGCA-G-GCTGTGGATGC-TCCGGTTGTATCCA- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650598 92 - 8658521 T-CCCCAG-GGCGCTGGGGAGG--AGGCCAGCCAGTGGCTTGTGTGTGT---CGCTGTGTGTGCCTGA---------------------TGGCA-G-GCTGTGGATGC-TCCGGTTGTATCCA- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114854220 105 + 124281992 TGTCCCGG-TGTGCTGGGGAGG--AGACCAGCCAGTGGCCTGTGTGTTG---CTGTGTGTGCACCTGATAG-------AGCCACTCC--TGGTG-G-GCCGTGGATGC-TCCGTTTGTATCCA- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 496252 105 - 9212255 TGTCCCGG-TGTGCAGGGGAGG--AGGCCAGCCAGTGGCCTGTGTGTTG---CTGCGTGTGCACCTGATAG-------AGCCATTCC--TGGCG-G-GCCGTGGATGC-TCCGTTTGTATCCA- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2915390 105 + 4466143 TGTCCCGG-TGTGCTGGGAAGG--AAGCCAGCCAGTGGCCTGTGTGTTG---CTGTGTGTGCACCTGATAG-------AGCCACTCC--TGGCG-G-GCCGTGGATGC-TCCGTTTGTATCCA- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1618334 103 + 5364348 TGTCCCGG-TGTGCTGGGGAGG--AGGCCAGCCAGTGGCCTGTGTGTTG---CTGTGTGTGTACCTGATAG-------AGCCACTCA--TGGCG-G-GCCGTGGATGC-T--GTTTGTATCCA- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4340260 61 + 7922563 T-CCTTGG-TGCCTTGGGCAAG-------------------------TG---CTATCAGTGCA--------------------------TGGCA-G-AGTATGGATGC-CT---TTGCACATA- i otoGar3.GL873618 I 2 I 2 s mm10.chr5 124833323 86 + 151834684 ---------------TGGCAGG--GGACCCCTCCGTGGTCTTCGCACTTGTCCTCTGGGCACACCTGAGAGT------AGCAGCCACA-CAACA-G-GGCACAGATAC----------ATCC-- i mm10.chr5 C 0 C 0 s canFam3.chr26 33188847 105 - 38964690 ---------TGTCTGGGGGAAGGAAAGCCAGCTAGTTGCCTTTGTGTGT-------GTGTGCTACCGACATCTAGTAGAGCTGCTGCA-CAGCA-GCATTGCTGGTGCCTCCATGTAAATCCT- i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 878484 106 - 1116856 T-CTTCGGTTCCTCTGGGGAAG--CAG--AGCCGGTGGCTTTTTTGTTG----GATAGGTGGATCTGATAG-------AGCTTTTATACAAGCACA-GTTGCAGGTGC-CTCTGTTAAATCCTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9501065 106 - 31815103 I e proCoq1.NW_012154285v1 6754178 100 - 9870158 I a score=192933.000000 s hg38.chr12_KI270834v1_alt 108143 17 + 119498 GTCTCTGCCTTG-TGTCC s panTro5.chr12 127393744 17 + 137163284 GTCTCTGCCTTG-TGTCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125744037 17 + 135337776 GTCTCTGCCTTG-TGTCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257592 17 - 8369578 GTCTCTGCCTTG-TGTCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915684 16 + 106955855 GTCTCTGCC-TG-TGTCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030753 17 + 133663169 GTCTCTTCCTTT-TGTCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278946 17 + 137757926 GTCTCTTCCTTG-TGTCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10677471 17 - 16319837 GTCTCTTCCTTG-TGTCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12301406 17 + 20526591 GTCTCTTCCTTG-TGTCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272807 17 + 128539186 GTCTCTTCCTTG-TGTCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 624321 17 + 6255621 GTCTCTTCCTTG-TGTCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650690 17 - 8658521 GTCTCTTCCTTG-TGTCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114854325 17 + 124281992 GGCTCTCCCCTG-TGTCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 496357 17 - 9212255 GGCTCTCCCCTG-TGTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2915495 17 + 4466143 GGTTCTCCCCTG-TGTCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1618437 17 + 5364348 GGCTCTCCCCTG-TGTCT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6754278 17 - 9870158 GTCTCTTCCTGG-TGTCG i proCoq1.NW_012154285v1 I 100 C 0 s otoGar3.GL873618 4340323 17 + 7922563 TCCTCTTCCCGG-TATCT i otoGar3.GL873618 I 2 C 0 s mm10.chr5 124833409 10 + 151834684 -------TCTTG-TCCCA i mm10.chr5 C 0 I 1 s canFam3.chr26 33188953 17 - 38964690 GTCTCTTCCTGG-TATCT i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 878590 18 - 1116856 GTTTTTGTTCTGTTGTCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9501065 106 - 31815103 I a score=3080922.000000 s hg38.chr12_KI270834v1_alt 108160 154 + 119498 CTAGGATGCTTTGTCTCAGGACTGTACCTGGAAGGTGCTGACTGGGATATAGAAAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCGATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAGGTGA----- s panTro5.chr12 127393761 154 + 137163284 CTAGGATGCTTTGTCTCAGGACTGTACCTGGAAGGTGCTGACTGGGATATAGAAAAAGGATGTCTTACCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCCATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAGGTGA----- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125744054 154 + 135337776 CTAGGATGCTTTGTCTCAGGACTGTACCTGGAAGGTGCTGACTGGGATATAGAAAAAGGATGTCTTACCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCGATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAGGTGA----- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257609 154 - 8369578 CTAGGATGCTTTGTCTCAGGACTGTACCTGGAAGGTGCTGACTGGGATATAGAAAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCGATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAGGTGA----- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915700 154 + 106955855 CTAGGATGCTTTGTCTCGGGACTGTACCTGGAAGGTGCTGACTGGGATATAGAAAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCGATCCTGAAGATCATCCCCATTGAAGTGCATCGCCTCAAGCTGCAGGTGA----- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030770 154 + 133663169 CTAGGGTGCTTTGTCTCAGGACTGTACCTGGAGGGTGCTGACTGGGATATGGAAAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCAATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAGGTGA----- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128278963 154 + 137757926 CTAGGGTGCTTTGTCTCAGGACTGTACCTGGAGGGTGCTGACTGGGATATAGAAAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCAATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAGGTGA----- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10677488 154 - 16319837 CTAGGGTGCTTTGTCTCAGGACTGTACCTGGAGGGTGCTGACTGGGATATAGAAAAAGGATGTCTGATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCAATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAGGTGA----- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12301423 154 + 20526591 CTAGGGTGCTTTGTCTCAGGACTGTACCTGGAGGGTGCTGACTGGGATATAGAAAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCGATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAGGTGA----- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272824 154 + 128539186 CTAGGATGCTTCGTCTCAGGACTGTACCTGGAGGGTGCTGACTGGGATATAGAAAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCGATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAGGTGA----- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 624338 154 + 6255621 CTAGGGTGCTTTGTCTCAGGACTGTACCTGGAGGGTGCTGACTGGGATATAGAAAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCGATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAGGTGA----- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650707 154 - 8658521 GTAGGATGCTTTGTCTCAGGACTGTACCTGGAGGGTGCTGACTGGGATATAGAAAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCGATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAGGTGA----- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114854342 154 + 124281992 CTAGGATGCTTTGTCTCAGGACTGTACCTGGAGGGTGCTGACTGGGATATAGAGAAAGGCTGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCGATCCTGAAGATCATCCCCATTGAAGCACACCGCCTCAAGCTGCAGGTGA----- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 496374 154 - 9212255 CTAGGATGCTTTGTCTCAGGACTGTACTTGGAGGGTGCTGACTGGGACATAGAGAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCGATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAGGTGA----- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2915512 154 + 4466143 CTAGGATGCTTTGTCTCAGGGCTGTACCTGGAGGGTGCTGACTGGGATATAGAGAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCGATCCTGAAGATCATCCCTATTGAAGCCCACCGCCTCAAGCTGCAGGTGA----- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1618454 154 + 5364348 CTAGGATGCTTTGTCTCAGGACTGTACCTGGAGGGTGCTGACTGGGATATAGAGAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCGATCCTGAAGATCATCCCCATTGAAGCCCACCGCCTCAAGCTGCAGGTGA----- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9501171 154 - 31815103 CTAGGGTGCTTTGTCTCGGGACTGTACCTGGAAGGTGCCGACTGGGACATAGAGAAGGGGTGTCTGGTCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCTATCCTCAAGATCATCCCCATCGAAGCCCATCGCCTCAAGCTGCAGGTGA----- i micMur3.chr21 I 106 I 496 s proCoq1.NW_012154285v1 6754295 154 - 9870158 CTAGGGTGCTTTGTCTCGGGACTGTACCTGGAAGGTGCCGACTGGGACATAGAGAGAGGATGTCTGGTCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCCATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAACTGCAGGTGA----- i proCoq1.NW_012154285v1 C 0 I 458 s otoGar3.GL873618 4340340 154 + 7922563 CTAGGATGCTTTGTCTCAGGACTGTATCTAGAAGGTGCTGACTGGGATTTAGAGAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCAATCCTGAAGGTCATCCCCATTGAAGCCCATCGCCTCAAACTGCAGGTGA----- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124833420 154 + 151834684 CTAGGGTGCTTTGTTTCTGGGCTCTACCTGGAAGGTGCTGACTGGGACATAGAGAGAGGGTGTCTTGTCAAGAGCAAGCCCAAGGTGCTGGTTGTGGACTTGCCCATCCTCAAGATCATCCCCACTGAAGGTCACCGCCTGAAGCTACAGGTGA----- i mm10.chr5 I 1 C 0 s canFam3.chr26 33188970 154 - 38964690 CTAGGATGCTTTGTCTCAGGACTGTATCTAGAAGGCGCTGACTGGGATATAGAAAAAGGCTGTCTTATCAAGAGCAAACCCAAGGTGCTGGTGGTTGACCTGCCGATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAACTGCGGGTAG----- i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 878608 159 - 1116856 CTAGGATGCTTTGTCTCAGGACTGTATCTAGAAGGTGCTGACTGGGACATAGAAAGAGGATGTCTTGTCAAGAGCAAACCCAAAGTGCTTGTGGTCGACCTGCCAATTCTGAAGATTATTCCCATTGAAGCACATCGCCTCAAATTGCAGGTTAGAGGC i dasNov3.JH568189 C 0 C 0 a score=1817553.000000 s hg38.chr12_KI270834v1_alt 108314 176 + 119498 AGGTCCCAG---------CCC-CTCCTCTCTGACACCAGGGCCCTTCCT-CTTCTGACTGT--AGTTATGGCTGAGGTGGTTTCCAACAGTCCTACTTTTTAAAACAGGGGTGCCTAAGCTTTATGGGCTGGGGAGAGTCTTGGAGCCGTGATA-AAAGCTACGGATAGCTGCTTCCTGGAAAAGGCGCG s panTro5.chr12 127393915 176 + 137163284 AGGTCCCAG---------CCC-CTCCTCTCTGACACCAGGGCCCTTCCT-CTTCTGACTGT--AGTTATGGCTGAGGTGGTTTCCAACAGTCCTACTTTTTAAAACAGGGGTGCCTAAGCTTTATGGGCTGGGGAGAGTCTTGGAGCCGTGATA-AAAGCTACGGATAGCTGCTTCCTGGGAAAGGCGCG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125744208 176 + 135337776 AGGTCCCAG---------CCC-CTCCTCTCTGACACCAGGGCCCTTCCT-CTTCTGACTGT--AGTTATGGCTGAGGTGGTTTCCAACAGTCCTACTTTTTAAAACAGGGGTGCCTAAGCTTTATGGGCTGGGGAGAGTCTTGGAGCCGTGATA-AAAGCTACGGATAGCTGCTTCCTGGGAAAGGCGCG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257763 176 - 8369578 AGGTCCCAG---------CCC-CTCCTCTCTGACACCAGGGCCCTTCCT-CTTCTGACTGT--AGTTATGGCTGAGGTGGTTTCCAACAGTCCTACTTTTTAAAACAGGGGTGCCTAAGCTTTATGGGCTGGGGAGAGTCTTGGAGCCGTGATA-AAAGCTACGGATCGCTGCTTCCTGGGAAAGGCGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97915854 173 + 106955855 AGGTCCCAG---------CCC-CTCCTCTCTGACACCAGGGCCCTTCCT-CTTCTGACTGT--AGTTATAGCTGAGGTGGTTTCCAACAGTCCTGC-TTTTAAAACACGGGTGCCTAAGCTTTATGGGCTGGG--GAGTCTTGGAGCCGTGCTA-AAAGCTATGGATAGCTGCTTCCCGGGAAAGGCGCG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124030924 176 + 133663169 AGGTCCCAG---------CCC-CTCCTCTCTGACACTAGAGCCCTTCCT-CTTCTGACTGT--AGTTATGGCTGAGGTGGTTTCCAATAGTCCTGCTTTTTAAAACAGGGGTGCCTAAGCTTTACGGGCTGGGGAGAGTCTTGGAGCCGTGATA-AAAGCTCTGGATAGCCGCTTCCCGGGAAAGGCGCG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128279117 176 + 137757926 AGGTCCCAG---------CCC-CTCCTCTCTGACACTAGAGCCCTTCCT-CTTCTGACTGT--AGTTATGGCTGAGGTGGTTTCCAATAGTCCTGCTTTTTAAAACAGGGGTGCCTAAGCTTTACGGGCTGGGGAGAGTCTTGGAGCCGTGATA-AAAGCTCTGGATAGCCGCTTCCCGGGAAAGGCGCG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10677642 176 - 16319837 AGGTCCCAG---------CCC-CTCCTCTCTGACACTAGAGCCCTTCCT-CTTCTGACTGT--AGTTATGGCTGAGGTGGTTTCCAATAGTCCTGCTTTTTAAAACAGGGGTGCCTACGCTTTACGGGCTGGGGAGAGTCTTGGAGCCGTGATA-AAAGCTCTGGATAGCCGCTTCCCGGGAAAGGCGCG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12301577 176 + 20526591 AGGTCCCAG---------CCC-CTCCTCTCTGACACTAGAGCCCTTCCT-CTTCTGACTGT--AGTTATGGCTGAGGTGGTTTCCAATAGTCCTGCTTTTTAAAACAGGGGTGCCTAAGCTTTATGGGCTGGGGAGAGTCTTGGAGCCGTGATA-AAAGCTCTGGATAGCCGCTTCCCAGGAAAGGCGCG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119272978 176 + 128539186 AGGTCCCAG---------CCC-CTCTTCTGTGACACTAGAGCCCTTCCT-CTTCTGACTGT--AGTTATGGCTGAGGTGGTTTCCAATAGTCCTGCTTTTTAAAATGGGGGTGCCTAAGCTTTATGGGCTGGGGAGAGTCTTGGAGCCATGATA-AAAGCTCTGGATAGCCGCTTCCCGGGAAAGGCGCG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 624492 176 + 6255621 AGGTCCCAG---------CCC-CTCCTCTCTGACACTAGAGCCCTTCCT-CTTCTGACTGT--AGTTATGGCTGAGGTGGTTTCCAATAGTCCTGCTTTTTAAAACAGGGGTGCCTAAGCTTTATGGGCTGGGGAGAGTCTTGGAGCCGTGATA-AAAGCTCTGGATAGCCGCTTCCCGGGAAAGGCGCG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4650861 175 - 8658521 AGGCCCCAG---------CCC-CTCCTCTCTGACACTAGAGCCCTTCCT-CTTCTGACTGT--AGTTATGGCTGAGGTGGTTTCCAATAGTCCTGC-TTTAAAGACAGGGGCGCCTAAGCTTTATGGGCTGGGGAGAGTCTTGCAGCCGTGATA-AAAGCTCTGGATAGCCGCTTCCCGGGAAAGGCGCG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114854496 171 + 124281992 AGC-CCCAG---------CCC-CTCCTCTCTGATACCAGGGAGCTTCCT-CTTCTGACTGT--AGTTATGGCTGAGGTGG-TTCCAATAGTCCTGCTTTTCCGAACAAGGGTGCCTGAGCTTTATGGGCTGGGGG-AGTCTTGAAGCCATGATA-AAAGCTGCAG--AGCTGCTTCCCGGGAAAGGCACG i calJac3.chr9 C 0 I 2 s saiBol1.JH378194 496528 171 - 9212255 AGG-CCCAG---------CCC-CTGCTCTCTGACACCAGGGACCTTCCT-CTTCTGACTGT--AGTTACGGCTGAGGTGG-TTCCAATAGTC---CTTTTTCAAACAAGGGTGCCTGAGCTTTATGGGCCGGGGGTAGTCTTGGAGCCATGATA-AAAGCTACAGAAAGCCGCTTCCCGGGAAAGGCACG i saiBol1.JH378194 C 0 I 2 s cebCap1.NW_016107484v1 2915666 174 + 4466143 AGG-CCCAG---------CCC-CTCCTCTCTGACACCAGGGACCTTCCT-CTTCTGACTGT--AGTTATCGCTGAGGTGG-TTCCAATAGTCCTCCTTTTTCAAACAAGGGTGCCTGAGCTTTATGGGCTGGGGGGAGTCTTGGAACCGTGATA-AAAGCTACAGAGAGCCGCTTCCCGGGAAAGGCACG i cebCap1.NW_016107484v1 C 0 I 25 s aotNan1.NW_018491581v1 1618608 173 + 5364348 AGG-CCCAG---------TCC-CTCCTCTCTGACACCAGGGACCTTCCT-CTTCTGACTGT--AGTTATGGCTGAGGTGG-TTCCAATAGTCCTGCTTTTTCAAACAAGGGTGCCTGAGCTTTATGGGCTGGGGG-AGTCTTGGAGCTGTGATA-AAAGCTACAGAGAGCCGCTTCCCGGGAAAGGCACG i aotNan1.NW_018491581v1 C 0 I 2 s otoGar3.GL873618 4340494 160 + 7922563 AGG-CCCG-----------CT-CTCTCCTCTGATGTCAGTCCCCT-----------GTGGT--AGTGACAGCTGAGGTAGTTTCCAATGGCCATGCCTTTAAAAACAGGGGCTGTTAACCTTTGTGGGCTGGGGA-GGCCTTGGAGATATGATACAAAGCAGTGG--AGCTACTT-CTGAGGAAGACACA i otoGar3.GL873618 C 0 I 2 s mm10.chr5 124833574 104 + 151834684 ------CAG-----------T-TTCCTCCCTGGCCCCATGGTGCCTTCC-CTTCTCTC---------------GGGGT-------------------------AACA----------------------TGAGGA-AATCCTGGAGGCATGGT--TAAGCTATGGGGACCAGTT--CAGGGGAAAACTCT i mm10.chr5 C 0 C 0 s canFam3.chr26 33189125 154 - 38964690 AGGCTGACG---------CCTGCTCCTATGTGCTCCC----CCCTGCCTACTTCTTAGCGTCAGGTCACACATGGGGTGG-TTCAGACAGTCTTGCCCTTTAAAACACGGGTGCTTAACCTTTTGTGGATGGGGGAAACCTTG-AGACAGGACA-GAAGCTTGG---AGCCAC----------------- i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 878767 157 - 1116856 AGGCCCCTGGTCTCATCCCCC-CACTTCTCCTACAC-------CTGCGT-CTTCTGACTGC---GTTATAGACGAGGGGGCTTCAGATAGTCCTGTCTTTTCAAa--ggggtcctttaccttttggggtcgggga-agcctttgagac-tgatg-aaagc-----------gcttcccaggagaa----- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9501325 496 - 31815103 I e proCoq1.NW_012154285v1 6754449 458 - 9870158 I a score=137899.000000 s hg38.chr12_KI270834v1_alt 108490 24 + 119498 GCTGTATGT-GTGT--GTGGATGCCGG s panTro5.chr12 127394091 24 + 137163284 GCTGCATGT-GTGT--GTGGATGCCGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125744384 24 + 135337776 GCTGCATGT-GTGT--GTGGATGCCGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257939 24 - 8369578 GCTGCATGT-GTGT--GTGGATGCCGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916027 24 + 106955855 GCTGCATGT-GCGT--GTGGATGCCGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031100 22 + 133663169 GCTGCACAT---GT--GTGGACGCCGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128279293 22 + 137757926 GCTGCACAT---GT--GTGGACGCCGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10677818 22 - 16319837 GCTGCACAT---GT--GTGGACGCCGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12301753 22 + 20526591 GCTGCACGT---GT--GTGGACGCCGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273154 22 + 128539186 GCTGCACAT---GT--GTGGACGCCGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 624668 22 + 6255621 GCTGCACAT---GT--GTGGACGCCGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651036 22 - 8658521 GCTACATGT---GT--GTGGATGCCGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114854669 24 + 124281992 GTTGCACAC-GTGC--GTGGATGCTGA i calJac3.chr9 I 2 C 0 s saiBol1.JH378194 496701 25 - 9212255 GTTGCGCAC-ATGCGTGTGGATGCT-A i saiBol1.JH378194 I 2 C 0 s aotNan1.NW_018491581v1 1618783 24 + 5364348 GTTGCGCAT-GTGC--GTGGATGCTGA i aotNan1.NW_018491581v1 I 2 C 0 s otoGar3.GL873618 4340656 21 + 7922563 GATGCATGT-ACAT--ATGTGTGA--- i otoGar3.GL873618 I 2 C 0 s mm10.chr5 124833678 24 + 151834684 GGTATGCAT-GCAT--GTGGGTACCCA i mm10.chr5 C 0 C 0 s canFam3.chr26 33189279 21 - 38964690 ---ACATGT-GCAC--TTGTAAGCAGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 878924 22 - 1116856 --tgcaTGAAATGC--AGGAATGCCA- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9501325 496 - 31815103 I e proCoq1.NW_012154285v1 6754449 458 - 9870158 I e cebCap1.NW_016107484v1 2915840 25 + 4466143 I a score=3160549.000000 s hg38.chr12_KI270834v1_alt 108514 323 + 119498 TCCTTCCAGAGGTGTCAGGCTCAAGCTGTGATCCTGTGGTCTAGACTAACC-AAGGGGAGACTCCCTCCCTTCTTGCAAAATGCTGCAGACATTG---CCTGAGTCATAAAGTGGTTCCCGCTGGTGTGGACAGCAGATGTCTTCTGCTCTGCCT-GGGCCAGGACCCACTTTTAACCAGGGTGTCAGTGTGAA---GCCAGGTCCCCGTGAAGCTGGCGGAGGGTGGCCCTGAGCAGCCCCAGCCTTGTGCGTGTTCTCAGGTGCAGTCTT--GCACAGGGGCCCC--TGCCTGTCAAG-ACTT---ACAC-TGCACCTCTGCCTTTAT--CCCTCTGCAC------ s panTro5.chr12 127394115 323 + 137163284 TCCTTCCAGAGGTGTCAGGCTCAAGCTGTGATCCTGTGGTCTAGACTAACC-AAGGGGAGACTCCCTCCCTTCTTGCAAAATGCTACAGACATTG---CCTGAGTCATAAAGTGGTTCCCTCTGGTGTGGACAGCAGATGTCTTCTGCTCTGCCT-GGGCCAGGACCCACTTTTAACCAGTGTGTCAGTGTGAA---GCCAGGTCCCCGTGAAGCTGGCGGAGGGTGGCCCTGAGCAGCCCCAGCCTCGTGCGTGTTCTCAGGTGCAGTCTT--GCACAGGGGCCCC--TGCCTGTCAAG-ACTT---ACAC-TGCACCTCTGCCTTCAT--CCCCCTGCAC------ i panTro5.chr12 C 0 C 0 s panPan2.chr12 125744408 323 + 135337776 TCCTTCCAGAGGTGTCAGGCTCAAGCTGTGATCCTGTGGTCTAGACTAACC-AAGGGGAGACTCCCTCCCTTCTTGCAAAATGCTACAGACATTG---CCTGAGTCATAAAGTGGTTCCCTCTGGTGTGGACAGCAGATGTCTTCTGCTCTGCCT-GGGCCAGGACCCACTTTTAACCAGTGTGTCAGTGTGAA---GCCAGGTCCCCGTGAAGCTGGCGGAGGGTGGCCCTGAGCAGCCCCAGCCTCGTGCGTGTTCTCAGGTGCAGTCTT--GCACAGGGGCCCC--TGCCTGTCAAG-ACTT---ACAC-TGCACCTCTGCCTTCAT--CCCCCTGCAC------ i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8257963 323 - 8369578 TCCTTCCAGAGGTGTCAGGCTCAAGCTGTGATCCTGTGGTCTAGACTAACC-AAGGGGAGACTCCCTCCCTTCTTGCAAAATGCTGCAGACATTG---CCTGAGTCATGAAGTGGTTCCCTCTGGTGTGGACAGCAGATGTCTTCTGCTCTGCCT-GGGCCAGGACCCACTTTTAACCAGTGTGTCAGTGTGAA---GCCAGGTCCCTGTGAAGCTGGCGGAGGGTGGCCCTGAGCAGCCCCAGCCTCGTGCGTGTTCTCAGGTGCAGTCTT--GCACGGGGGCCCC--TGCCTGTCAAG-ACTT---ACAC-TGCACCTCTGCCTTTAT--CCCTCTGCAC------ i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916051 324 + 106955855 TCCTTTCAGAGGTGTCAGGCTCAAGTTGTGATCCTGTGGTCTAGACTAACC-AAGGGGAGACTCCCTCCCTTCTTGCAAAATGCTGCAGACATTG---CCTGAGTCATAAAGTGGTTCCCTCTGGTGTGGACAGCAGATGCCTTCTGCTCTGCCT-GGGCCAGGACCCACTTTTAGCCAGTGTGTCAGTGTGAA---GCCAGGTCCCCGTGAAGCTGGCGGAGGGTGGCCCTGAGCAGCCCCAGCCTCGTGTGTGTTCTCAGGTGCAGTGTT--GCACAGGGGCCCC--TGCCTGTCAAG-ACTT--AACAC-TGCACCTTTGCCTTTAT--CCCTCTGCAC------ i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031122 312 + 133663169 TCCTTCCAGAGGTGTCAGGCTCAAGTTGTGATCCTGTGGTCAAGACTAACC-AAGGGGAGACTCCCTCC---CTTGCAAAATGCTGCAGACGTTG---CCTGAGCCATAAAGTGGTTCCCTCTGGTGTGGACAGCAGATGCCTTCTGCTCTGCCT-GGGCCAGGACCCACTTTTAACCA--GTGTCAGTGTGAA---GCCAGGTCCCCGTGAAGCTGGCAGAGGGCGGCCCTGCACAGCCCCAGCCTCGT--GTGTTCTCAGGTGCAGTCTT--GCACGGGGGCCC------CTGTCAAG-ACTT---ACAC-TGCCCCTTTGCCTTTAT--CCCTCTGCAC------ i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128279315 311 + 137757926 TCCTTCCAGAGGTGTCAGGCTCAAGTTGTGATCCTGTGGTCAAGACTAACC-AAGGGGAGACTCCCTCC---CTTGCAAAATGCTGCAGACGTTG---CCTGAGCCATAAAGTGGTTCCCTCTGGTGTAGACAGCAGATGCCTTCTGCTCTGCCT-GGGCCAGGACCCACTTTTAACCA--GTGTCAGTGTGAA---GCCAGGTCCCCGTGAAGCTGGCAGAGGACGGCCCTGCACAGCCCCAGCCTCGT--GTGTTCTCAGGTGCAGTCTT--GCAC-GGGGCCC------CTGTCAAG-ACTT---ACAC-TGCCCCTTTGCCTTTAT--CCCTCTGCAC------ i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10677840 312 - 16319837 TCCTTCCAGAGGTGTCAGGCTCAAGTTGTGATCCTGTGGTCAAGACTAACC-AAGGGGAGACTCCCTCC---CTTGCAAAATGCTGCAGACGTTG---CCTGAGCCATAAAGTGGTTCCCTCTGGTGTGGACAGCAGATGCCTTCTGCTCTGCCT-GGGCCAGGACCCACTTTTAACCA--GTGTCAGTGTGAA---GCCAGGTCCCCGTGAAGCTGGCAGAGGGCGGCCCTGCACAGCCCCAGCCTCGT--GTGTTCTCAGGTGCAGTCTT--GCACGGGGGCCC------CTGTCAAG-ACTT---ACAC-TGCCCCTTTGCCTTTAT--CCCTCTGCAC------ i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12301775 300 + 20526591 TCCTTCCAGAGGTGTCAGGCTCAAGTTGTGATCCTGTGGTCAAGACTAACC-AAGGGGAGACTCCCTCC---CTTGCAAAATGCTGCAGACGTTG---CCTGAGTCATAAAGTGGTTCCCTCTGGTGTGGACAGCACATGCCTTCTGCTCTGCCT-GGGCCAGGGCCCACTTTTAACCA--GTGTCAGTGTGAA---GTCAGGTCCCCGTGAAGCT----------AGCCCTGCACAGCCCCAGCCTCGT--GTGTTCTCAGGTGCAGTCTT--GCACGGGGGCCC--------GTCAAG-ACTT---ACAC-TGCCCCTTTGCCTTTAT--CCCTCTGCAC------ i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273176 311 + 128539186 TCCTTCCAGAGGTGTCAGGCTCAAGTTGTGATCCTGTGGTCAAGACTAACC-AAGGGGAGACTCCCT-T---CTTGCAAAATGCTGCAGACGTTG---CCTGAGTCATAAAGTGGTTCCCTCTGGTGTGGACAGCAGATGCCTTCTGCTCTGCCT-GGGCCAGGGCCCACTTTTAACCA--GTGTCAGTGTGAA---GCCAGGTCCCCATGAAGCTGGCAGAGGGCGGCCCTGCACAGCCCCAGCCTCGT--GTGTTCTCAGGTGCAGTCTT--GCACGGGGGCCC------CTGTCAAG-ACTT---ACAC-TGCCCCTTTGCCTTTAT--CCCTCTGCAC------ i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 624690 312 + 6255621 TCCTTCCAGAGGTGTCAGGCTCAAGTTGTGATCCTGTGGTCAAGACTAACC-AAGGGGAGACTCCCTCC---CTTGCAAAATGCTGCAGACGTTG---CCTGAGTCATAAAGTGGTTCCCTCTGGTGTGGACAGCACATGCCTTCTGCTCTGCCT-GGGCCAGGGCCCACTTTTAACCA--GTGTCAGTGTGAA---GCCAGGTCCCCGTGAAGCTGGCAGAGGGCGGCCCTGCACAGCCCCAGCCTCGT--GTGTTCTCAGGTGCAGTCTT--GCACGGGGGCCC------CTGTCAAG-ACTT---ACAC-TGCCCCTTTGCCTTTAT--CCCCCTGCAC------ i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651058 315 - 8658521 TCCTTCCAGAGGTGTCAGGCTCAAGTTGTGATCCTGTGGTCAAGACTAACC-AAGGGGAGACTCCCTCCCTTCTTGCAAAATGCTGCAGACGTTG---CCTGAGTCATAAAGTGGTTCCCTCTGGTGTGGACAGCAGATGTCCTCTGCTCTGCCT-GGGCCAGGGCCCACTTTTAACCA--GTGTCAGTGTGGA---GCCAGGTGCCCGTGAAGCTGGCAGAGGGCGGCCCTGCACAGCCCCAGCCTGCT--GCGTTCTCAGGTGCAGTCTT--GCACGGGGGCCC------CTGTCAAG-ACTT---ACAC-TGCCCCTTTGCCTTTAT--CCCTCTGCAC------ i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114854693 323 + 124281992 TCTTTCCACAGGTGGCAGGCTCAAGTTGTAATCCTGTGGTCTAGACTAACC-AAGGGGAGACTCCCTGCCCTCTTGTGAAATGCTGCAGACGTTG---CCTGAGTCATAAAGTGGTTTCCTCTGGTGTGGACAGCAGATGCCTTCTGCTCTGCCT-GGGCCAGGACCCACTTTTAACCAGTGTCTCTGTGTGAA---GCCAGGTTCCCGTGAAGCTGGTGGAGGGTGGCCCTGCGAAGCCCTGGCCCCGTGTGTGTTCTCAGATACAGTCTCTGGCCCTGGCTCCTC-TGGCCTGTCAAGCACTTTTAAGAC-TGCACCTTCA---------CCCCCTCCAC------ i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 496726 321 - 9212255 TCTTTCCACAGGTGGCGGGCTCAAGTTGCAATCCTGTGGTCTAGACTAACC-AAGGGGAGACTCCCTGCCCTCTTGTGAAATGCTGCAGACGTTG---CCTGAGTCATAAAGTGGTTTCCTCTGGTGTGGACAGCAGATGCCTTCTGCTCTGCCT-GGGCCAGGACCCACTTTTAACCAGTGTCTCTGTGTGAA---GCCAGGTCCCCGTGAAGCTGGTAGAGGGTGGCCTTGTGAAGCCCCAGCCCTGTGTGTGTTCTCAGATGCAGTCTT--GCACAAGGGCCCC-CTGCCTGTCAAGCACTTTTAAGAC-TGCACCTTCA---------CCCCCTCCAC------ i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2915865 321 + 4466143 TCTTTCCACAGGTAGCAGGCTCAAGTTGTGATCCTGTGGTCTAGACTAACC-AAGGGGAGACTCCCTGCCCTCTTGTGAAATGCTGCAGACGTTG---CCTGAGTCATAAAGTGGTTTCCTCTGGTGTGGACAGCAGATGCCTTCTGCTCTGCCT-GGGCCAGGACCTACTTTTAACCAGTGTCTCTGTGTGAA---GCCAGGTGTCCGTGAAGCTGGTGGAGGGCGGCCCTGCGAAGCCCCGGCCCCATGTGTGTTCTCAGATGCAGTCTT--GCACGAGGGCCCC-CTGCCTGTCAAGCACTTTTAAGAC-TGCACCTTCA---------CCCCCTCCAC------ i cebCap1.NW_016107484v1 I 25 C 0 s aotNan1.NW_018491581v1 1618807 321 + 5364348 TCTTTCCACAGGCGGCAGGCTCAAGTGGCAGTCCTGTGGTCTAGACTAACC-AAGGGGAGACTCCCTGCCCTCTTGTGAAATGCTGCAGATGTTG---CCTGAGTCATAAAGTGGTTTCCTCTAGTGTGGACAGCAGATGACTTCTGCTCTGCCT-GGGCCAGGACCCACTTTTAACCAGTGTCTCTGTGTGAA---GCCAGGTCCAAGTGAAGCTGGTGGAGGATGGCCCTGCGAAGCCCTGACCCCGTGTGTGTTCTCAGATGCAGTCTT--GCATGAGGGCCCC-CTGCCTGTCAAGTACTTTTAAGAC-TGCACCTTCA---------CCCCCTCCAC------ i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4340677 297 + 7922563 TCATTCCACAAGTGTCAGGTTCAAGTTTAGATCCTACGGTCTAGCCTTGCT------GAGACTCCCTCTCTTCTTGTGAAATTCTGTGGAGATGG---TTTGAATTACAAAGTAGTGACACATGGTGTGGACAGCAGGTGTCCTCT-CTTTGCCC-CAGCCAGGATCCACGATTAACAAGTGTATCTGTGTGAA---GCCCAGTCCCCATTAAGTTGGTGGTGGGTGGCCTT---------------------TGTTCTCAGATGCAGCCTT--GCTCCAGGGCTTG-CTGCCCTT--AG-ATTA---GCCA-GGGACAGGAGCCTACAGGAACTTTTTCAA------ i otoGar3.GL873618 C 0 I 2 s mm10.chr5 124833702 230 + 151834684 -TCATCCACAGGGGTCAAGTCCAAGCTCAGAGCCTATGGTAGAGAC---CC-AGGGAAAG--------------TAGGCAATTTTGGACACACTAATTATTGAGTTACAAAGGGGCTTCATTTAGTG--------------------CTTTGCCT--GGCCAGGGTCCATCTTTGATGA--GCGTC--TGTGGATTTGCCCAGCGCCCATGGTACTCACA-----------TGCCAGGCCAAGGC------------------TGCTGCATA--TAAAGAGTGCCC------------AG-GCTA---AGCC--------------------CCCTCTAGCC------ i mm10.chr5 C 0 I 5 s canFam3.chr26 33189300 307 - 38964690 GACTCCCTGGGCAGCACAGCTTCACGCACAGAGCTGTGATCCGGCCTGACTTCAGGAGAGACT-CCTCCCTTCCCATCACATTCTGCGGACATTG---CTTGAATCTTAAAGTACTTACATCTGGCATGG-CAGCAGGCGCCTCCTGCCTGGCCCCGAGCCCAGATCTGCTTTTAAT----GTGTCTGTGGGAA---GCCCTGTCCGCCTTCAGTTAGCGGAGGGAGGCCC-GCAGAGCCTCGGCCA-----GGGCTCGTAGGAG---------GCACACTGCCCTCGGCGCTAAGGTGG-AGTG---GCACATTCCCCTGGGCCTGAGC--TCCTGTGC-------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 878946 270 - 1116856 ------CAGGAGTCTCCGGTTCAAGTTCAGAACCCATGGTCTAGACTTACTTCAGGAGAGATTTCCTCCTTTCTTGTGGAATTCTCTGGGAATTG---CCTGCAGCACAAGGTAGTTACCGTGGGTGTGGACAGCGGGCGCCTCCTGCTGGGCTC--GGCGGGGATCCACTTTGAA-----GTCTAC---TAGA---GCCCTGTCCAGGTGCGCTTAGCCGGGGATTATCCT------------------------------------------GCTGGAGGGCCCA-CTGCGTCTTAAG-GCCT---AGAA-GAAACCTTTGC--------CCCTCTTTAGTAATGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9501325 496 - 31815103 I e proCoq1.NW_012154285v1 6754449 458 - 9870158 I a score=25435.000000 s hg38.chr12_KI270834v1_alt 108837 3 + 119498 CCT s panTro5.chr12 127394438 3 + 137163284 CCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125744731 3 + 135337776 CCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258286 3 - 8369578 CCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916375 3 + 106955855 TCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031434 3 + 133663169 GCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128279626 3 + 137757926 GCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678152 3 - 16319837 GCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302075 2 + 20526591 -CC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273487 3 + 128539186 CCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625002 2 + 6255621 CC- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651373 3 - 8658521 CCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855016 3 + 124281992 CCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497047 3 - 9212255 CCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916186 3 + 4466143 CCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619128 3 + 5364348 CCT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6754907 3 - 9870158 CCT i proCoq1.NW_012154285v1 I 458 C 0 s otoGar3.GL873618 4340976 3 + 7922563 CCT i otoGar3.GL873618 I 2 C 0 s mm10.chr5 124833937 3 + 151834684 CCT i mm10.chr5 I 5 C 0 s dasNov3.JH568189 879216 3 - 1116856 GCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9501325 496 - 31815103 I e canFam3.chr26 33189607 0 - 38964690 C a score=3413099.000000 s hg38.chr12_KI270834v1_alt 108840 178 + 119498 CTCTCCGTGG-----GGGCATCTCACCTGCCTTTCCCTTGCAGAATACTTTCCGGACCCCCGTCTACACCACCTCCATGAGAAGGAACGCCATGGGAGTCGGCTTGGTTTTTGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTC s panTro5.chr12 127394441 178 + 137163284 CTCTCCGTGG-----GGGCATCTCACCTGCCTTTCCCTCGCAGAATACTTTCCGGACCCCTGTCTACACCACCTCCATGAGAAGGAACGCCATGGGAGTCGGCTTGGTTTTCGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125744734 178 + 135337776 CTCTCCGTGG-----GGGCATCTCACCTGCCTTTCCCTCGCAGAATACTTTCCGGACCCCTGTCTACACCACCTCCATGAGAAGGAACGCCATGGGAGTCGGCTTGGTTTTTGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258289 178 - 8369578 CTCTCCGTGG-----GGGCATCTCACCTGCCTTTCCCTTGCAGAATACTTTCCGGACCCCTGTCTACACCACCTCCATGAGAAGGAACGCCATGGGAGTCGGCTTGGTTTTTGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916378 178 + 106955855 CTCTCCATGG-----GGGCGTCTCACCTGCCTTTCCCTTGCAGAATACCTTCCGGACCCCTGTCTACACCACCTCCATGAGAAGGAACGCCATGGGAGTCGGCTTGGTTTTTGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031437 178 + 133663169 CTCGCCATGG-----GGGCGCCTCACCTGCCTCTCCCTTGCAGAATACCTTCCGGACCCCCGTCTACACCACCTCCATGAGAAGGAACGCCATGGGAGTCGGCTTGGTGTTTGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128279629 178 + 137757926 CTCGCCATGG-----GGGCGCCTCACCTGCCTCTCCCTTGCAGAATACCTTCCGGACCCCTGTCTACACCACCTCCATGAGAAGGAACGCCATGGGAGTCGGCTTGGTGTTTGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678155 178 - 16319837 CTCTCCATGG-----GGGCGCCTCACCTGCCTCTCCCTTGCAGAATACCTTCCGGACCCCCGTCTACACCACCTCCATGAGAAGGAACGCCATGGGAGTCGGCTTGGTGTTTGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302077 178 + 20526591 CTCTCCATGG-----GGGCGCCTCCCCTGCCTCTCCCTTGCAGAATACCTTCCGGACCCCCGTCTACACCACCTCCATGAGAAGGAACGCCATGGGAGTCGGCTTGGTGTTTGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273490 178 + 128539186 TTCTCCATGG-----GGGCGCCTCACCTGCCTCTCCCTTGCAGAATACCTTCCGGACCCCCGTCTACACTACCTCCATGAGAAGGAACGCCATGGGAGTCGGCTTGGTTTTTGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625004 178 + 6255621 CTCTCCGTGG-----GGGCGCCTCACCTGCCTCTCCCTTGCAGAATACCTTCCGGACCCCCGTCTACACCACCTCCATGAGAAGGAACGCCATGGGAGTCGGCTTGGTGTTTGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651376 178 - 8658521 CTCTCCATGG-----GGGCGCCTCACCTGCCTCTCCCTTGCAGAATACCTTCCGGACCCCCGTCTATACCACCTCCATGAGAAGGAACGCCATGGGAGTCGGCTTGGTTTTTGAAGCTGATCTCTTTACCACGAGGCACATCTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855019 178 + 124281992 CTCTCTAAGG-----GGGTGTCTCACCTGCCTTTCTCTTGCAGAATACCTTCCGGACCCCTGTCTACACCACCTCCACGAGAAGGAACGCCATGGGTGTTGGATTGGTCTTTGAAGCTGACCTCTTTACCACAAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497050 178 - 9212255 CTCTCCAAGG-----GGGCGTCTCACCTGCCTTTCCCTTGCAGAATACCTTCCGGACCCCTGTCTACACCACCTCCATGAGAAGGAACGCCATGGGTGTTGGCTTGGTCTTTGAAGCTGATCTCTTTACCACCAGGCACATTTCTCACTGGGTGCTGCAGGGAGTATGCCTCACCCTGAATTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916189 178 + 4466143 CTCTCCAAGG-----GGGTGTCTCACCTGCCTTTCCTTTGCAGAATACCTTCCGGACCCCTGTCTACACCACCTCCATGAGAAGGAACGCCATGGGTGCTGGCTTGGTCTTTGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619131 178 + 5364348 CTCTCCAAGG-----GGGTGTCTCACCTGCCTTTCCCTTGCAGAATACCTTCCGGACCCCTGTCTACACCACCTCCATGAGAAGGAACGCCATGGGTGTTGGCTTGGTCTTTGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTGTGCCTAACCCTGAATTC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9501821 178 - 31815103 CTCTCCCCGG-----GGGCTTCTCACCTGCCTTTCCCTTGCAGAATACCTTCCGGACCCCCGTGTACACCACCTCCATGAGAAGGAACGCCATGGGCGTTGGCTTGGTCTTTGAAGCCGATCTCTTTACCACGAAGCACATTTCTCACTGGGTGCTACAAGGGGTGTGCCTCACCCTCAATTC i micMur3.chr21 I 496 I 86 s proCoq1.NW_012154285v1 6754910 178 - 9870158 CTCTCCGTGG-----GAGCGTCTCACCTGCCTTTCCCTTGCAGAATACCTTCCGGACCCCTGTCTACACCACCTCCATGAGAAGGAACGCCATGGGCGTTGGCTTGGTCTTTGAAGCTGATCTCTTTACCACGAAGCACCTTTCTCACTGGGTACTGCAAGGGGTGTGCCTCACCCTCAACTC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4340979 177 + 7922563 CTCTCTGT-G-----GAGCGTCTCACCTGCCTTTCCCTTGCAGAATACCTTCCGGACCCCTGTCTACACCACCTCCATGAGAAGGAACGCTATGGGAGTTGGCTTGGTTTTTGAAGCTGATCTCTTTACCACAAAGCACATTTCTCACTGGGTGCTACAAGGGGTATGCCTCACCCTCAATTC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124833940 178 + 151834684 CCAATCCTGA-----GGGTCTGTCACCAGCCTCTCCCTTGCAGAACACCTTCCGGACCCCTGTCTACACTACCTCCATGAGGAGAAATGCCATGGGAATCGGCTTAGTGTTCGAAGCTGACCTCTTCACGGCAAAACACATCTCACACTGGGTGCTCCAGGGGGTGTGCCTCACCCTGAACTC i mm10.chr5 C 0 C 0 s canFam3.chr26 33189607 175 - 38964690 -CCTCCGTGG-----GG--ATCTCACATACGTTTCCTTTGCAGAACACCTTCCGGACGCCAGTCTACACCACCTCCATGAGAAGGAATGCCATGGGAGTCGGCCTGGTGTTTGAAGCTGACCTCTTCACCACGAAGCACATTTCTCACTGGGTGCTGCAGGGAGTGTGCCTCACCCTGAATTC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879219 183 - 1116856 TTCTCCTCGGTCCACGGGGGTCTCACACACCTGTCCTTTTCAGAATACCTTCCGGACACCTGTCTATACCACCTCCATGAGAAGGAATGCCATGGGAGTTGGCCTGGTGTTTGAAGCTGATCTCTTTACTACGAGGCACATTTCTCACTGGGTGCTGGAAGGGGTATGCCTCACCCTGAATTC i dasNov3.JH568189 C 0 C 0 a score=107681.000000 s hg38.chr12_KI270834v1_alt 109018 6 + 119498 TGATTA s panTro5.chr12 127394619 6 + 137163284 TGATTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125744912 6 + 135337776 TGATTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258467 6 - 8369578 TGATTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916556 6 + 106955855 TGATTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031615 6 + 133663169 TGATTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128279807 6 + 137757926 TGATTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678333 6 - 16319837 TGATTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302255 6 + 20526591 TGATTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273668 6 + 128539186 TGATTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625182 6 + 6255621 TGATTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651554 6 - 8658521 TGATTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855197 6 + 124281992 TGATTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497228 6 - 9212255 TGATTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916367 6 + 4466143 TGATTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619309 6 + 5364348 TGATTA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6755088 6 - 9870158 TGATTA i proCoq1.NW_012154285v1 C 0 I 82 s otoGar3.GL873618 4341156 6 + 7922563 TGATTA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124834118 6 + 151834684 GGATTA i mm10.chr5 C 0 C 0 s canFam3.chr26 33189782 6 - 38964690 CGATTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879402 6 - 1116856 TGATTA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9501999 86 - 31815103 I a score=82873.000000 s hg38.chr12_KI270834v1_alt 109024 7 + 119498 ACCTTTG s panTro5.chr12 127394625 7 + 137163284 ACCTTTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125744918 7 + 135337776 ACCTTTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258473 7 - 8369578 ACCTCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916562 7 + 106955855 ACCTTTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031621 7 + 133663169 ACCTTTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128279813 7 + 137757926 ACCTTTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678339 7 - 16319837 ACCTTTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302261 7 + 20526591 ACCTTTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273674 7 + 128539186 ACCTTTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625188 7 + 6255621 ACCTTTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651560 7 - 8658521 ACCTTTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855203 7 + 124281992 ACGTTTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497234 7 - 9212255 ACCTTTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916373 7 + 4466143 ACCTTTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619315 7 + 5364348 ACCTTTG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4341162 7 + 7922563 AGATTTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124834124 7 + 151834684 AGCTCAG i mm10.chr5 C 0 I 46 s canFam3.chr26 33189788 4 - 38964690 ---ACTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879408 7 - 1116856 GCTCTTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9501999 86 - 31815103 I e proCoq1.NW_012154285v1 6755094 82 - 9870158 I a score=518574.000000 s hg38.chr12_KI270834v1_alt 109031 53 + 119498 -GGTGAAGAAAACTGCTTAATGAATTCGGAGCCT-GGGGTTG-------------------TC----AGAGTGATCGG s panTro5.chr12 127394632 57 + 137163284 -GGTGAAGAAAACTGCTTAATGAATTCGGAGCCT-GGGGTTG-------------------TCAGGAAGAGTGATCGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125744925 57 + 135337776 -GGTGAAGAAAACTGCTTAATGAATTCGGAGCCT-GGGGTTA-------------------TCAGGAAGAGTGATCGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258480 57 - 8369578 -GGTGAAGAAAACTGCTTAATGAATTCGGAGCCT-GGGGTTG-------------------TCAGGAAGAGTGATCGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916569 57 + 106955855 -GGTGGAGAAAACTGCTTAATGAATTCGGAGCCT-GGGGTGG-------------------TTGGGAAGAGTGATCAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031628 58 + 133663169 -GGTGAAGAAAACTGCTTAGTGAATTCGGAGCCTCGGGCTGG-------------------TTGGGAAGAGTGATCAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128279820 58 + 137757926 -GGTGAAGAAAACTGCTTAGTGAATTCGGAGCCTCGGGCTGG-------------------TTGGGAAGAGTGATCAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678346 58 - 16319837 -GGTGAAGAAAACTGCTTAGTGAATTCGGAGCCTCGGGCTGG-------------------TTGGGAAGAGTGATCAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302268 58 + 20526591 -GGTGAAGAAAACTGCTTAATGAATTCGGAGCCTCGGGCTGG-------------------TTGGGAAGAGTGATCAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273681 58 + 128539186 -GGTGAAGAAAACTGCTGAATGAATTCGGAGCCTCGGGCTGG-------------------TTGGGAAGAGTGATCGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625195 58 + 6255621 -GGTGAAGAAAACTGCTTAATGAATTCGGAGCCTCGGGCTGG-------------------TTGGGAAGAGTGATCAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651567 58 - 8658521 -GGTGAAGAAAACTGCTTAATGAATTCGGAGCCTCGGGCTGG-------------------TTGGGAAGAGTGATAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855210 58 + 124281992 -GGCGAAGAAAACTGTGTCATGAATTCTGAATCTGGGGCTGA-------------------TCAGGAAGAGTGACTGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497241 58 - 9212255 -GGCGAAGAAAGCTGCTTCATGAATTCTGCATCTGGGGCTGG-------------------TCAGGAAGAGTGACTGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916380 58 + 4466143 -GGCGAAGAAAACTGCTTCATGAATTCTGAATCTGGGGCTGG-------------------TCAGGAAGAGTGACTGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619322 58 + 5364348 -GGCGAAGAAAACTGCTTCATGAATTCTGAGTCTGGGACTGG-------------------TCAGGAAGAGTGACTGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4341169 55 + 7922563 -GGAAAAGAAAACTGGATAACAAATCCTGAGCTGGGGGTTAG-------------------TGGGGAA---TGCTCTG i otoGar3.GL873618 C 0 I 22 s canFam3.chr26 33189792 72 - 38964690 -GGCGAAGAAACCCACCCTGTGAGCTCC--ATCT-GGGCTGGCGGTGGCAA--ATGGGAATTTGTCAATAATGGTCAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879415 78 - 1116856 GAGCAGAAGATACTGGATTTGGAATTCTAAGTCTGTGGCTCACACCAACTATTCTGGGAATTCATGAAGAATGATCAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9501999 86 - 31815103 I e mm10.chr5 124834131 46 + 151834684 I e proCoq1.NW_012154285v1 6755094 82 - 9870158 I a score=89473.000000 s hg38.chr12_KI270834v1_alt 109084 5 + 119498 GTCTG s panTro5.chr12 127394689 5 + 137163284 GTCTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125744982 5 + 135337776 GTCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258537 5 - 8369578 GTCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916626 5 + 106955855 GTCTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031686 5 + 133663169 GTCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128279878 5 + 137757926 GTCTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678404 5 - 16319837 GTCTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302326 5 + 20526591 GTCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273739 5 + 128539186 GTCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625253 5 + 6255621 GTCTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651625 5 - 8658521 GTCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855268 5 + 124281992 GTCTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497299 5 - 9212255 GTCTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916438 5 + 4466143 GTCTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619380 5 + 5364348 GTCTG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9502085 5 - 31815103 GTCCG i micMur3.chr21 I 86 C 0 s proCoq1.NW_012154285v1 6755176 5 - 9870158 GTCTG i proCoq1.NW_012154285v1 I 82 C 0 s otoGar3.GL873618 4341246 5 + 7922563 GTTTG i otoGar3.GL873618 I 22 C 0 s canFam3.chr26 33189864 5 - 38964690 GTCCC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879493 5 - 1116856 GTCTG i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124834131 46 + 151834684 I a score=616864.000000 s hg38.chr12_KI270834v1_alt 109089 37 + 119498 CTGTCATTTCTTGGGGCCTCTCAA--------------------GAGGCAGGAGGGG s panTro5.chr12 127394694 37 + 137163284 CTGTCATTTCTTGGGGCCTCTCAA--------------------GAGGCAGGAGGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125744987 37 + 135337776 CTGTCATTTCTTGGGGCCTCTCAA--------------------GAGGCAGGAGGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258542 37 - 8369578 CTGTCATTTCTTGGGGCCTCTCAA--------------------GAGGCAGGAGGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916631 37 + 106955855 CTGTCATTTCTTGGGGCCTCTCAA--------------------GAGGCAGGAGGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031691 37 + 133663169 CTGTCATTTCTTGGGGCCTCTCAA--------------------GAGGCAGGAGGGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128279883 37 + 137757926 CTGTCATTTCTTGGGGCCTCTCAA--------------------GAGGCAGGAGGGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678409 37 - 16319837 CTGTCATTTCTTGGGGCCTCTCAA--------------------GAGGCAGGAGGGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302331 37 + 20526591 CTGTCATTTCTTGGGGCCTCTCAA--------------------GAGGCAGGAGGGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273744 37 + 128539186 CTGTCATTTCTTGGGGCCACTCAA--------------------GAGGCAGGAGGGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625258 37 + 6255621 CTGTCATTTCTTGGGGCTTCTCAA--------------------GAGGCAGGAGGGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651630 37 - 8658521 CTGTCATTTCTTGGGGCCTCTCAA--------------------GAGGCAGGAGGGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855273 37 + 124281992 CTGTCATTTCTTGGGGCCTCTCAA--------------------GAGGCAGGAGAGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497304 37 - 9212255 CTGTCATTTCTTGGGGCCTCTCAA--------------------GAGGCGGGAGAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916443 37 + 4466143 CTGTCATTTCTTGGGGCCTCTCAA--------------------GAGGCGGGAGAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619385 37 + 5364348 CTGTCATTTCTTGGGGCCTCTCAA--------------------GAGGCGGGAGAGG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9502090 36 - 31815103 CTGTCATTTCTTGTGGTCTCTCAA--------------------GGGGCAGGAGGG- i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6755181 37 - 9870158 CTGTTGTTTCTTGTGGCCTCTCAA--------------------GGGGCAGGAGGGG i proCoq1.NW_012154285v1 C 0 I 112 s otoGar3.GL873618 4341251 37 + 7922563 CCGTCATTTCTTGGGGCCTCTCAA--------------------GGGGCAGGAAGAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124834177 37 + 151834684 CTGTATTTCAGGGGGGCTTCCCTC--------------------CGGGCTGGGTGGG i mm10.chr5 I 46 I 15 s canFam3.chr26 33189869 35 - 38964690 CGGTCCCCTCTTGGGGC--CTGGA--------------------AAGGCTGGAGGTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879498 56 - 1116856 CTGTCATTTCTTG-GGTCTCTCAAAGCCTCCACATACATGAGTGGAGACTGGAGGGG i dasNov3.JH568189 C 0 C 0 a score=430158.000000 s hg38.chr12_KI270834v1_alt 109126 37 + 119498 GACTGACACTGATTTTT----C----ATTTGAAATCAGCCACTTA s panTro5.chr12 127394731 37 + 137163284 GACTGACACTGATTTTT----C----ATTTGAAATCAGCCACTTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745024 37 + 135337776 GACTGACACTGATTTTT----C----ATTTGAAATCAGCCACTTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258579 37 - 8369578 GACTGACGCTGATTTTT----C----ATTTGAAATCAGCCACTTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916668 37 + 106955855 GACTGACACTGATTTTT----C----ATTTGAAATCAGCCATTTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031728 37 + 133663169 GACTGACACTGATTTTT----C----ATTTGAAATCAGCCATTTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128279920 37 + 137757926 GACTGACACTGATTTTT----C----ATTTGAAATCAGCCATTTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678446 37 - 16319837 GACTGACACTAATTTTT----C----ATTTGAAATCAGCCATTTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302368 37 + 20526591 GACTGACACTGATTTTT----C----ATTTGAAATCAGCCATTTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273781 37 + 128539186 GACTGACACTGATTTTT----C----ATTTGAAATCAGCCATTTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625295 37 + 6255621 GACTGACACTGATTTTT----C----ATTTGAAATCAGCCATTTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651667 37 - 8658521 GAATGACACTAATTTTT----C----ATTTGAAATCAGCCATTTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855310 36 + 124281992 GATTGA-ACTGATTTTT----C----ATTGGAAATCGGCCATTTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497341 36 - 9212255 GATTGA-ACTGATTTTT----C----ATTTGAAATTGGCCATTTA i saiBol1.JH378194 C 0 I 112 s cebCap1.NW_016107484v1 2916480 36 + 4466143 AACTGA-ACTGATTTTT----C----ATTTGAAATCGGCCATTTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619422 36 + 5364348 GATTGA-ACTGATTTTT----C----ATTTGAAATCGGCCATTTA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9502126 41 - 31815103 AACTGACAATGATCTTCCTTAC----ATTGGAAATCAGTTATTTA i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4341288 40 + 7922563 -ATTTACAATGATCTTCCTTAC----ATTGGAAATCAGCCATTTA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124834229 35 + 151834684 GTTTGATGCTGATTTTC----C------TTGAAATCAGCCAACTA i mm10.chr5 I 15 C 0 s canFam3.chr26 33189904 4 - 38964690 GACT----------------------------------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879554 40 - 1116856 -GCTGACACTGATTTTC----CTCTAATTTGCAATCAGCAGTTTT i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6755218 112 - 9870158 I a score=15801.000000 s hg38.chr12_KI270834v1_alt 109163 2 + 119498 AA s panTro5.chr12 127394768 2 + 137163284 AA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745061 2 + 135337776 AA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258616 2 - 8369578 AA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916705 2 + 106955855 AA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031765 2 + 133663169 CA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128279957 2 + 137757926 CA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678483 2 - 16319837 CA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302405 2 + 20526591 AA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273818 2 + 128539186 AA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625332 2 + 6255621 AA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651704 2 - 8658521 AA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855346 2 + 124281992 TA i calJac3.chr9 C 0 C 0 s cebCap1.NW_016107484v1 2916516 1 + 4466143 -A i cebCap1.NW_016107484v1 C 0 I 1 s aotNan1.NW_018491581v1 1619458 1 + 5364348 -A i aotNan1.NW_018491581v1 C 0 I 1 s micMur3.chr21 9502167 2 - 31815103 AA i micMur3.chr21 C 0 C 0 s otoGar3.GL873618 4341328 2 + 7922563 AA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124834264 2 + 151834684 AA i mm10.chr5 C 0 I 6 s dasNov3.JH568189 879594 2 - 1116856 AA i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6755218 112 - 9870158 I e canFam3.chr26 33189908 0 - 38964690 C e saiBol1.JH378194 497377 112 - 9212255 I a score=341789.000000 s hg38.chr12_KI270834v1_alt 109165 22 + 119498 TCTCTTTCCATACAAATTAACC s panTro5.chr12 127394770 22 + 137163284 TCTCTTTCCATACAAATTAACC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745063 22 + 135337776 TCTCTTTCCATACAAATTAACC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258618 22 - 8369578 TCTCTTTCCGTACAAATTAACC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916707 22 + 106955855 GCTCTTTCCATACAAATTAACC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031767 22 + 133663169 TCTCTTTCCATACAAATTAACC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128279959 22 + 137757926 TCTCTTTCCATACAAATTAACC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678485 22 - 16319837 TCTCTTTCCATACAAATTAACC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302407 22 + 20526591 TCTCTTTCCATACAAATTAACC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273820 22 + 128539186 TCTCTTTCCATACAAATTAACC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625334 22 + 6255621 TCTCTTTCCATACAAATTAACC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651706 22 - 8658521 TCTCTTTCCATGTAAATTAACC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855348 22 + 124281992 CCTCTTTCCATACAAATTAACC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497489 22 - 9212255 TCTCTTTACATACAAATTAATC i saiBol1.JH378194 I 112 C 0 s cebCap1.NW_016107484v1 2916518 22 + 4466143 TCTCTTTCCATACAAACTAACC i cebCap1.NW_016107484v1 I 1 C 0 s aotNan1.NW_018491581v1 1619460 22 + 5364348 TCTCCTTCCATACAAATTAACC i aotNan1.NW_018491581v1 I 1 C 0 s micMur3.chr21 9502169 22 - 31815103 TCTCTCTTCATACAAATTAACC i micMur3.chr21 C 0 I 81 s otoGar3.GL873618 4341330 20 + 7922563 TCTTTCT--ATACAAATTAACC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124834272 21 + 151834684 TATTTTTCCAT-TAAATGAACC i mm10.chr5 I 6 I 7 s canFam3.chr26 33189908 19 - 38964690 ---CTTTCCATATAAATTAAGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879596 22 - 1116856 TCTCTTTCTATACTAATTAACC i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6755218 112 - 9870158 I a score=149349.000000 s hg38.chr12_KI270834v1_alt 109187 13 + 119498 TGAATGGTTTT--GT- s panTro5.chr12 127394792 13 + 137163284 TGAATGGTTTT--GT- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745085 13 + 135337776 TGAATGGTTTT--GT- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258640 13 - 8369578 TGAATGGTTTT--GT- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916729 13 + 106955855 TGAATGGTTTG--GT- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031789 13 + 133663169 TGAATGGTTTT--AT- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128279981 13 + 137757926 TGAATGGTTTT--AT- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678507 13 - 16319837 TGAATGGTTTT--AT- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302429 13 + 20526591 TGAATGGTTTT--AT- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273842 13 + 128539186 TGAATGGTTTT--AT- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625356 13 + 6255621 TGAATGGTTTT--AT- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651728 13 - 8658521 TGAATGGTTTT--AT- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855370 13 + 124281992 TGAACGGTTTT--GT- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497511 13 - 9212255 TGAATGGTTTT--GT- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916540 13 + 4466143 TGAACGGTTTT--GT- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619482 13 + 5364348 TGAACGGTTTT--GT- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4341350 14 + 7922563 -TGATGGTTTTGAGC- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124834300 13 + 151834684 GCAGTGGGTTT--GT- i mm10.chr5 I 7 I 272 s canFam3.chr26 33189927 12 - 38964690 -TGATGGTTTT--AT- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879618 14 - 1116856 AGAATGGTTTT--TGT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9502191 81 - 31815103 I e proCoq1.NW_012154285v1 6755218 112 - 9870158 I a score=277818.000000 s hg38.chr12_KI270834v1_alt 109200 34 + 119498 TTTTAATACTACTTTTT---AAAAGGAATT--TATATAA s panTro5.chr12 127394805 34 + 137163284 TTTTAATACTACTTTTT---AAAAGGAATT--TATATAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745098 34 + 135337776 TTTTAATACTACTTTTT---AAAAGGAATT--TATATAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258653 33 - 8369578 TTTTAATACTACTTTTT----AAAGGAATT--TATATAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916742 31 + 106955855 TTTTGA---TACTTTTT---AAAAGGAATT--TATATAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031802 34 + 133663169 TTTTAATACTACTTTTT---AAAAGGAATT--TATATAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128279994 34 + 137757926 TTTTAATACTACTTTTT---AAAAGGAATT--TATATAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678520 34 - 16319837 TTTTAATACTACTTTTT---AAAAGGAATT--TATATAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302442 34 + 20526591 TTTTAATACTACTTTTT---AAAAGGAATT--TATATGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273855 34 + 128539186 TTTTAATACTACTTTTT---AAAAGGAATT--TATATAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625369 34 + 6255621 TTTTAATACTACTTTTT---AAAAGGAATT--TATATGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651741 36 - 8658521 TTTTAATACTACTTTTT---AAAAGGAATTTATATATAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855383 32 + 124281992 TTTTAATGCTATTTTT-----AAAGGACTC--TATATAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497524 32 - 9212255 TTTTAATGCTACTTTT-----AAAGGAATC--TATATAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916553 32 + 4466143 TTTTAATGCTATTTTA-----AAAGGAATC--TATATAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619495 32 + 5364348 TTTAAGTACTATTTTT-----AAAGGAATC--TATATAA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4341364 30 + 7922563 TATTTTTTTTCCTTTC-------AGAATTT--TATATAT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33189939 30 - 38964690 TTTTCA-GCTATTTCT------AAGGATTC--TGCATAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879632 37 - 1116856 TTTTAAAATTTTTTTTTTCCTTTAGAATTC--TGTGTAC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9502191 81 - 31815103 I e mm10.chr5 124834313 272 + 151834684 I e proCoq1.NW_012154285v1 6755218 112 - 9870158 I a score=650846.000000 s hg38.chr12_KI270834v1_alt 109234 46 + 119498 TCAAAAAGTAAATATTGGAGAGTATTTTAAGATGTGTGGAGTTTTC s panTro5.chr12 127394839 46 + 137163284 TCAAAAAGTAAATATTGGAGAGTATTTTAAGATGTGTGGAGTTTTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745132 46 + 135337776 TCAAAAAGTAAACATTGGAGAGTATTTTAAGATGTGTGGAGTTTTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258686 46 - 8369578 TCAAAAAGTAAATATTGGAGAGTATTTTAAGATGTGTGGAGTTTTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916773 46 + 106955855 TCAAAAAGTAAATATTGGAGAGTATTTTAAGATGTGTGGAGTTTTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031836 46 + 133663169 TCAAAAAGTAAATATTGGAGAGTATTTTAAGGTGTGTGGAGTTTTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128280028 46 + 137757926 TCAAAAAGTAAATATTGGAGAGTATTTTAAGGTGTGTGGAGTTTTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678554 43 - 16319837 TCAAAAAGTAAATATTGGAGAGTGTTTTAAGGTGTGT---GTTTTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302476 46 + 20526591 TCACAAAGTAAATCTTGGAGAGTATTTTAAGGTGTGTGGAGTTTTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273889 46 + 128539186 TCAAAAAGTAAATATTGGAGAGTATTTTAAGGTGTGTGGAGTTTTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625403 46 + 6255621 TCACAAAGTAAATATTGGAGAGTATTTTAAGGTGTGTGGAGTTTTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651777 46 - 8658521 TCAAAAAGTAAATATTGGAGAGTATTTTAAGATGTGTGGAGTTTTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855415 46 + 124281992 TCAACAGGTAAATATTGGAGAGTATTTTAAGATGTGTGGAGTTTTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497556 46 - 9212255 TCAACAAGTAAATACTGGAGAGTATTTTAAGATGTGTGGAGTTTTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916585 46 + 4466143 TCAACAAGTAAATACTGGAGAGTATTTTAAGATGTGTGGAGTTTTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619527 46 + 5364348 TCAACAAGTAAATATTGGAGGGTATTTTAAGATGTGTGGAGTTTTC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6755330 44 - 9870158 TCAAAAACTAAATACTAGAGAGCATTTCAAGAT--GTGGTGTTTTC i proCoq1.NW_012154285v1 I 112 C 0 s otoGar3.GL873618 4341394 46 + 7922563 TCAAAAAGTAAATACTAGAGAGCATTTTAAGATGAGTTGAGTTTTC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33189969 44 - 38964690 TTGAAAAGTAAATACTAGAAATCATTTTAAGGTATGT--CGTTTTC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879669 46 - 1116856 TCATAAAGAAGATACTATAGAACATCTTAAGATGTGTTGAGTTTTC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9502191 81 - 31815103 I e mm10.chr5 124834313 272 + 151834684 I a score=680151.000000 s hg38.chr12_KI270834v1_alt 109280 45 + 119498 TTTTCCTTCTCAGAGAAAACACTTGATTAGGCAAAAGTGCCTGGC s panTro5.chr12 127394885 45 + 137163284 TTTTCCTTCTCAGAGAAAACACTTGATTAGGCAAAAATGCCTGGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745178 45 + 135337776 TTTTCCTTCTCAGAGAAAACACTTGATTAGGCAAAAATGCCTGGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258732 45 - 8369578 TTTTCCTTCTCAGAGAAAACACTTGATTAGGCAAAAGTGCCTGGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916819 45 + 106955855 TTTTCCTTCTCAGAGAAAACACTTGATTAGGCAAAAGTGCCTGGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031882 45 + 133663169 TTTTCCTTCTCAGAGAAAACACTTGATTAAGCAAAAGTGCCTGAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128280074 45 + 137757926 TTTTCCTTCTCAGAGAAAACACTTGATTAAGCAAAAGTGCCTGAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678597 45 - 16319837 TTTTCCTTCTCAGAGAAAACACTTGATTAAGCAAAAGTGCCTGAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302522 45 + 20526591 TTTTCCTTCTCAGAGAAAACACTTGATTAAGCAAAAGTGCCTGAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273935 45 + 128539186 TTTTCCTTCTCAGAGAAAACACTTGATTAAGCAAAAGTGCCTGAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625449 45 + 6255621 TTTTCCTTCTCAGAGAAAACACTTGATTAAGCAAAAGTGCCTGAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651823 40 - 8658521 TTTTCCTTCTC-----AAACACCTGATTAGGCAGACGTGCCTGAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855461 43 + 124281992 TTTTCCTTCTCAGAG--AACACTTGATTAGGCAAAAGTGCCTGAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497602 43 - 9212255 TTTTCCTTCTCAGAG--AACACTTGATTAGGCAAAAGTGCCTGAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916631 43 + 4466143 TTTTCCTTCTCAGAC--AACACTTGATTAGGTAAAAGTGCCTGAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619573 43 + 5364348 TTTTCCTTCTCAGAG--AACACTTGATTAGGCGAAAGTGCCTGAC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9502272 45 - 31815103 TTTTCATTCTCAGAGGAAACATTTGACTAAGCAGAAGTGCCTGGC i micMur3.chr21 I 81 I 161 s proCoq1.NW_012154285v1 6755374 45 - 9870158 TTTTCGTTCTCAGAGGAAACACTTGATTAAGCAGAAGTGCCTGGC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4341440 45 + 7922563 TTTTCATTCTCAGAGGAAACACTTGATTAAGCAGAAGTGCCTGGC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33190013 45 - 38964690 TTTCCGTTCTCAGAGGAGACGTGTGATTAGGCAAAGATGCCGGGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879715 44 - 1116856 TTTTCCTCCTCAGAGGAAGTACTTGATTAAGCAAAGG-GCCTGGT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124834313 272 + 151834684 I a score=1048031.000000 s hg38.chr12_KI270834v1_alt 109325 99 + 119498 ATACATAGCATTGGCACAAGTGAGAATCCTAATGT-AATTTCCAAAGGTGTG-TTTTCGATGATCCAGGTCTGTTTCAGCAGATGCTCCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- s panTro5.chr12 127394930 99 + 137163284 ATACATAGCATTGGCACAAGTGAGAATCCTAATGT-AATTTCCAAAGGTGTG-TTTTCGACGATCCAGGTCTGTTTCAGCAGATGCTCCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745223 99 + 135337776 ATACATAGCATTGGCACAAGTGAGAATCCTAATGT-AATTTCCAAAGGTGTG-TTTTCGACGATCCAGGTCTGTTTCAGCAGATGCTCCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258777 99 - 8369578 ATACATAGCATTGGCACAAGTGAGAATCCTAATGT-AATTTCCAAAGGTGTG-TTTTCGACGATCCAGGTCTGTTTCAGCAGATGCTCCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916864 99 + 106955855 ATACATAGCATTGGCACAAGTGAGAATCCTAATGT-AATTTCCAAAGGTGTG-TTTTTGATGATCCAGGTCTGTTTCAGCAGATGCTCCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124031927 99 + 133663169 ATACATAGCATTGGCACAAGTGAGAATCCTAATGT-CATTTCCAAAAGTGTG-TTTTCGACGATCCAGGTCTGTTTCAGCAGATGCTCCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128280119 99 + 137757926 ATACATAGCATTGGCACAAGTGAGAATCCTAATGT-CATTTCCAAAAGTGTG-TTTTCGACGATCCAGGTCTGTTTCAGCAGATGCTCCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678642 99 - 16319837 ATACATAGCATTGGCACAAGTGAGAATCCTAATGT-CATTTCCAAAAGTGTG-TTTTCGACGATCCAGGTCTGTTTCAGCAGATGCTCCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302567 99 + 20526591 ACACACAGCATTGGCACAAGTGAGAATCCTAATGT-CATTTCCAAAAGTGTG-TTTTCGACGATCCAGGTCTGTTTCCGCAGATGCTCCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119273980 99 + 128539186 ATACATAGCACTGGCACAAGTGAGAATCCTAATGT-CATTTCCAAAAGTGTG-TTTTCGACGATCCAGGTCTGTTTCAGCAGATGCTCCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625494 99 + 6255621 ATACATAGCATTGGCACAAGTGAGACTCCTAATGT-CATTTCCAAAAGTGTG-TTTTCGACGATCCAGGTCTGTTTCAGCAGATGCTCCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651863 99 - 8658521 ATACATAGCATTGGCACAAGTGAGAATCCTAATGT-CATTTCCAAAGGTGTG-TTTTCAACGATCCAGGTCTGTTTCAGCAGATGCTCCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855504 99 + 124281992 ATGCATCGCGTTGGCACAAGTGAGAATCCTAATGT-AATTCCCAGAGGTGTG-TTTTTTGCCATCCTGGTCTGTTTCAGCAGATGAACCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497645 101 - 9212255 ATGCATCGCATTGGCACAAGGGAGAATCCTCATGTAAATTTCTAAAGGTGTGTTTTTTTGCCATCCTGGTCTGTTTCAGCAGATGCACCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916674 101 + 4466143 ATGCATCGCATTGGCACAAGTGAGAATCCTAATATAAATTTCCAAAGGTGTGTTTTTTTGCCATCCTGGTCTGCTTCAGCAGATGCACCT-------------------------------------------------------TTTTGGTAAGA----------------------------------------------------------------------------------------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619616 100 + 5364348 ATGCATCGCATTGGCACAAGTGAGAATCCTAATGTAAATTTCCAAAGGTGTG-TTTTTTGCCATCCTGGTCTGTTTCAGCAGATGCACCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6755419 94 - 9870158 ----GCGCCACTGGCCCGAGTAAGAGTCCTAACGTAAACCTCCGAAGGGGTG---TTTGACAACCCAGGTCTGTGTCAGCAGATGCTCCT-------------------------------------------------------TTTTGGCAAGA----------------------------------------------------------------------------------------- i proCoq1.NW_012154285v1 C 0 I 88 s otoGar3.GL873618 4341485 151 + 7922563 ----ATATCACTGGCCCAAATGAGAGTCCTAATGTAAATTTCCAAATGGGTG-TTTTTGACAGTCCAGGTCTGTTTCAGCAGATGCTCCTCAGAAGGCTGAGGCTGCTGGGGGAGGGATTCCAGGCAGACCCCTTCTCTGTGAGCTGATGGCAGGC----------------------------------------------------------------------------------------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33190058 31 - 38964690 --------------------------------TGC---------------TG-GGTGGGGTGACCAAGTCCTCTTCCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879759 180 - 1116856 ----ATGTC--TGGTGCAACTCAGAATTCGAATGTACCTTTCCAGAGGTGTG--ATTTGACAATCCAGG--TGTTTCAGCAGATGCCTTC-------------------------------------------------------TTTTGGAAAGTGCTCTCTGCTTAGGTGGGGGACAGAAACCCAGACTGCTGGGCATGGAGCCAGCCGAGCCCTCCTCTGCGCTGAACTGCAGGCAGCAGGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9502317 161 - 31815103 I e mm10.chr5 124834313 272 + 151834684 I a score=201667.000000 s hg38.chr12_KI270834v1_alt 109424 15 + 119498 AGGGCTGATGATGTC s panTro5.chr12 127395029 15 + 137163284 AGGGCTGATGATGTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745322 15 + 135337776 AGGGCTGATGATGTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258876 15 - 8369578 AGGGCTGATGATGTC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916963 15 + 106955855 AGGGCTGATGATGTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124032026 15 + 133663169 AGGGCTGATGATGTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128280218 15 + 137757926 AGGGCTGATGATGTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678741 15 - 16319837 AGGACTGATGATGTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302666 15 + 20526591 AGGGCTGATGATGTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119274079 15 + 128539186 AGGGCTGATGATGTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625593 15 + 6255621 AGGGCTGATGATGTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651962 15 - 8658521 AGGGCTGATGATGTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855603 15 + 124281992 AGGGCTGATGATGTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497746 15 - 9212255 AGGGCTGATGATGTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916775 15 + 4466143 AGGACTGATGATGTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619716 15 + 5364348 AGGGCTGATGATGTC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4341636 15 + 7922563 AAGGCTGATGAGGCC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33190089 13 - 38964690 --GGCCGATAATACT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879939 15 - 1116856 TGGGCTAGTGATGCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9502317 161 - 31815103 I e mm10.chr5 124834313 272 + 151834684 I e proCoq1.NW_012154285v1 6755513 88 - 9870158 I a score=12292.000000 s hg38.chr12_KI270834v1_alt 109439 1 + 119498 G s panTro5.chr12 127395044 1 + 137163284 G i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745337 1 + 135337776 G i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258891 1 - 8369578 G i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916978 1 + 106955855 G i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124032041 1 + 133663169 G i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128280233 1 + 137757926 G i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678756 1 - 16319837 A i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302681 1 + 20526591 G i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119274094 1 + 128539186 G i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625608 1 + 6255621 G i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651977 1 - 8658521 G i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855618 1 + 124281992 G i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497761 1 - 9212255 G i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916790 1 + 4466143 G i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619731 1 + 5364348 A i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4341651 1 + 7922563 A i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124834585 1 + 151834684 G i mm10.chr5 I 272 C 0 s canFam3.chr26 33190102 1 - 38964690 G i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879954 1 - 1116856 G i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9502317 161 - 31815103 I e proCoq1.NW_012154285v1 6755513 88 - 9870158 I a score=16511.000000 s hg38.chr12_KI270834v1_alt 109440 1 + 119498 G s panTro5.chr12 127395045 1 + 137163284 G i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745338 1 + 135337776 G i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258892 1 - 8369578 G i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916979 1 + 106955855 G i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124032042 1 + 133663169 G i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128280234 1 + 137757926 G i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678757 1 - 16319837 G i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302682 1 + 20526591 G i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119274095 1 + 128539186 G i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625609 1 + 6255621 G i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651978 1 - 8658521 G i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855619 1 + 124281992 G i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497762 1 - 9212255 G i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916791 1 + 4466143 G i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619732 1 + 5364348 G i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6755601 1 - 9870158 G i proCoq1.NW_012154285v1 I 88 C 0 s otoGar3.GL873618 4341652 1 + 7922563 G i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124834586 1 + 151834684 A i mm10.chr5 C 0 C 0 s dasNov3.JH568189 879955 1 - 1116856 G i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9502317 161 - 31815103 I e canFam3.chr26 33190103 0 - 38964690 C a score=1176440.000000 s hg38.chr12_KI270834v1_alt 109441 86 + 119498 GCACAGAGCAGAAGTGACC---AGTCACCTGGAGCCACT-TCTCCC-CCTTCCAG--AACTCTCTGG-------------CCCTAGCTTCTTTGGCTCTGACCTGC s panTro5.chr12 127395046 86 + 137163284 GCACAGAGCAGAAGTGGCC---AGTCACCTGGAGCCACT-TCTCCC-CCTTCCAG--AACTCTCTGG-------------CCCTAGCTTCCTTGGCTCTGACCTGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745339 86 + 135337776 GCACAGAGCAGAAGTGGCC---AGTCACCTGGAGCCACT-TCTCCC-CCTTCCAG--AACTCTCTGG-------------CCCTAGCTTCCTTGGCTCTGACCTGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258893 86 - 8369578 GCACAGAGCAGAAGTGGCC---AGTCACCTGGAGCCACT-TCTCCC-CCTTCCAG--AACTCTCTGG-------------CCCTAGCTTCTTTGGCTCTGACCTGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97916980 86 + 106955855 GCACAAAGCAGAAGTGGCC---AGTCACCTGGAGCCACT-TCTCCC-CCTTCTAG--AACTCTCTGG-------------CCCTAGCTTCTTTGGCTCTGACCTGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124032043 88 + 133663169 GTACACAGCAGAAGTGGCC-AGAGTCACCTGGAGCCACT-GCTCCC-CCTTCCAG--AACTCTCTGG-------------CCCTAGCTGCTTTGGCTCTGACCTGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128280235 88 + 137757926 GTACACAGCAGAAGTGGCC-AGAGTCACCTGGAGCCACT-GCTCCC-CCTTCCAG--AACTCTCTGG-------------CCCTAGCTGCTTTGGCTCTGACCTGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678758 88 - 16319837 GCACACAGCAGAAGTGGCC-AGAGTCACCTGGAGCCACT-GCTCCC-CCTTCCAG--AACTCTCTGG-------------CCCTAGCTGCTTTGGCTCTGACCTGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302683 88 + 20526591 GCACACAGCAGAAGTGGCC-AGAGTCACCTGGAGCCACT-TCTCCC-ACTTCCAC--AACTCTCTGG-------------CCCTAGCTTCTTTGGCTCTGACCTGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119274096 88 + 128539186 GCACACAGCAGAAGTGGCC-AGAGTCACCTGGAGCCACT-TCTCCC-CCTTCCAG--AACTCTCTGG-------------CCCTGGCTTCTTTGGCTCTGACCTGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625610 88 + 6255621 GCACACAGCAGAAGTGGCC-AGAGTCACCTGGAGCCACT-TCTCCC-CCTTCCAG--AACTCTCTGG-------------CCCTAGTTTCTTTGGCTCTGACCTGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4651979 88 - 8658521 GCACACAGCAGAAGTGGCC-AGAGTCACCTGGAGCCACT-TCTCCC-CCTTCCAG--AACTCTCTGG-------------CCCTAGCTTCTTTGGCTCTGACCTGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855620 85 + 124281992 GAGC-GAGCAGAAGTGGCC---AGTCACCTGCAGCCACT-TCTCCC-CCTTCTAG--AACTCTCTGG-------------CCCTGGCTCCTTTGGCTCTGAGCTGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497763 87 - 9212255 CACA-GAGCAGAAGTGGCC-AGAGTCACCTGCGGCCACT-TCTCCC-CCTTCTAG--AACTCTCTGG-------------CCCTGGCTCTTCTGGCTCTGAGCTGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916792 88 + 4466143 GCCCAGAGCAGATGTGGCC-AGAGTCACCTGCAGCCACT-TCCCCT-CCTTCTAG--AACTCTCTGG-------------CCCTGGCTCCTTTGGCTCTGAGCTGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619733 86 + 5364348 GCACAGAGCAGAAGCGGCC---AGTCACCTGCAGCCACT-TCTCAC-CCTTCTAG--AACTCTCTGG-------------CCCTGGCTCCTTTGGCTCTGAGCTGC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9502478 87 - 31815103 GCACAGAGCAGAAGTGGCC-AGGCTCA-CTGCAGTCACT-TCTCCC-CATTCCAG--AAATCTCTGG-------------CCCCAGCTCCTTTGGCTCTGACCTGC i micMur3.chr21 I 161 I 44 s proCoq1.NW_012154285v1 6755602 88 - 9870158 GCACAGAGCAGAAGTGGCC-AGACTCACCTGCAGTCGCT-TCTTTC-CATTCCAG--AAATCTCTGG-------------CCCCAGATCCTTTGGCTCTGACCTGC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4341653 86 + 7922563 ACACAGAGAGGAGGTGGCC-AGAATCATCTACAGCCACT-TCTCCC-CATTCCAG--AA--CTGTGG-------------CCTCAGGTCCTTTGGCTCTGACTTGC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124834587 105 + 151834684 GCACACGCCAGAGCGAGTTTTAAGGCAAGTGCATTCATTCTCCCTC-CCTTCCTGCTAAGCCACTGGTGTGGGGATCCACCTCCGGCTGCTCCGGCACATGGCTCC i mm10.chr5 C 0 I 1 s canFam3.chr26 33190103 55 - 38964690 -CCCAGAGCAGGGATGGCC-----------------ACC-CCTCCCACCTTCCAG--AGCTGTCCAG-------------CCC-----------------ACCAGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 879956 80 - 1116856 GCACGGAGCAGAGGTAGTC-AG----ACCATTGGCCACT-T---TC-CCTTACAG--AGGTCTCTGG-------------CCCCAGCTCCCTTGGCCTTG-CCTGC i dasNov3.JH568189 C 0 C 0 a score=552719.000000 s hg38.chr12_KI270834v1_alt 109527 54 + 119498 -----TACGGCGACTGTGAAGTTGTTGAGCTTAGTGTTTAGTTCC-TGCATGAGCTTCTA s panTro5.chr12 127395132 54 + 137163284 -----TATGGCGACTGTGAAGTTGTTGAGCTTAGTGTTTAGTTCC-TGCAGGAGCTTCTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745425 54 + 135337776 -----TATGGCGACTGTGAAGTTGTTGAGCTTAGTGTTTAGTTCC-TGCAGGAGCTTCTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8258979 51 - 8369578 -----TACGGCGACTGTGAA---GTTGAGCTTAGTGTTTAGTTCC-TGCATGAGCTTCTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97917066 54 + 106955855 -----TACAGCGACTGTGAGGTTGTTGAGCTTAGTGTTTAGTTCC-TGCATGAGCTTCTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124032131 54 + 133663169 -----TACAGTGACTGTGAGGTTGTTGAGCTTAGTGTTTAGTTCC-TGCATGAGCTTCCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128280323 54 + 137757926 -----TACAGTGACTGTGAGGTTGTTGAGCTTAGTGTTTAGTTCC-TGCATGAGCTTCCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678846 54 - 16319837 -----TACAGTGACTGTGAGGTTGTTGAGCTTAGTGTTTAGTTCC-TGCATGAGCTTCCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302771 54 + 20526591 -----TACAGTGACTGTGAGGTTGTTGAGCTTAGTGTTTAGTTCC-TGCATGAGCTTCCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119274184 54 + 128539186 -----TACAGTAACTGTGAGGTTGTTGAGCTTAGTGTTTAGTTCC-TGCATGAGCTTCCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625698 54 + 6255621 -----TACAGTGACTGTGAGGTTGTTGAGCTTAGTGTTTAGTTCC-TGCATGAGCTTCCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4652067 54 - 8658521 -----TACAGTGACTGTGAGGTTGTTGAGCTTAGTGTTTCGTTCC-TGCATGAGCTTCTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855705 54 + 124281992 -----CAGGGTGACTGTGAGGCTGTTGAGCTTAGTGTTTAGTTCC-TGCACCAGATTCTA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497850 53 - 9212255 -----CAGGGTGACTGTGA-GCTGTTCAGCTTAGTGTTTAGTTCC-TGCACCAGATTCTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916880 54 + 4466143 -----CAGGGTGACTGTGAGGCTGTTGAACTTGGTGTTTAGTTCC-TGCACCGGATTCTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619819 54 + 5364348 -----CAGGGTGACTGTGAGGCTGTTGATCTTAGTGTTTAGTTCC-TGCACCAGATTCTA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6755690 53 - 9870158 -----CAGGGTACCAGTGTGGCTGTTGAGCTTGG-GTTTCATTCC-TGCACGAGCTCCTG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4341739 46 + 7922563 ------CAGGTATTCATAAGGCTGTTGAGCTT---ATTTAATTCC-TGT----GCTTTTA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124834693 50 + 151834684 -----TCCGGCAAGAGCACAGAGGCTCA----AGCGTTCAGTTCC-TGCCCGAGCTCCAG i mm10.chr5 I 1 C 0 s canFam3.chr26 33190158 38 - 38964690 -------TGGGGGTGGGGAAGGACCTTCGGCTGGTGTGTAATTCC--------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 880036 60 - 1116856 CAGGGCAGGGCACTGGTGAGACTCCCGAGCCTAGAGTTGAACTCCCTGCAGGAGCTCCCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9502565 44 - 31815103 I a score=492185.000000 s hg38.chr12_KI270834v1_alt 109581 33 + 119498 CCCCCAGCCTGCCTGGGTCTGTGTGGGGTCAGG s panTro5.chr12 127395186 33 + 137163284 CCCCCAGCCTGCCTGGGTCTGTGTGGGGTCAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745479 33 + 135337776 CCCCCAGCCTGCCTGGGTCTGTGTGGGGTCAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8259030 33 - 8369578 CCCCCAGCCTGCCTGGGTCTGTGTGGGGTCAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97917120 33 + 106955855 CCCCTAGCCTGCCTGGGTCTGTGTGGGGTCAAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124032185 33 + 133663169 CCCCCAGCCTGCCTGGGTATGTGTGGGGTCAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128280377 33 + 137757926 CCCCCAGCCTGCCTGGGTCTGTGTGGGGTCAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678900 33 - 16319837 CCCCCAGCCTGCCTGGGTCTGTGTGGGGTCAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302825 33 + 20526591 CCCCCAGCCTGCCTGGGTCTGTGTGGGGTCAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119274238 33 + 128539186 CCCCCAGCCTGCCTGGGTCTGTGTGGGGTCAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625752 33 + 6255621 CCCCCAGCCTGCCTGGGTCTGTGTGGGGTCAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4652121 33 - 8658521 CCCCCAGCCTGCCTGCGTCTGTGTGGGGTCAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855759 33 + 124281992 CCCGCAGCCTGCCTGGGTCTGTGTGGGGTCGGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497903 32 - 9212255 CCC-CCGCCTGCCTGGGTCTATGTGGCGTTGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916934 33 + 4466143 CCCCCTGCCTGCCTGGGTCTGTGTGGGGTTGGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619873 33 + 5364348 CCCCCAGCCTGCCTACGTCTGTGTGGGATCAGG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9502609 33 - 31815103 CCCCCAACCTGCCTGAGTTTGTGTGGGGTCAGG i micMur3.chr21 I 44 I 21 s proCoq1.NW_012154285v1 6755743 33 - 9870158 AGCCCAGCCTGCCTGAGTTTGTGTGGGGTTGGG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4341785 32 + 7922563 GCCCCAACCTG-CTGAGTTTATTTGGGGTTGGG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124834743 17 + 151834684 ------ACCTCTTC---TCTGTGTGG------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33190196 31 - 38964690 --CACCACCTGGCCGGGTCTGTGTGGCACTGCG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 880096 33 - 1116856 GCCCCAGCCTTCCTGGGTTGGTGTGGGGTTAAG i dasNov3.JH568189 C 0 C 0 a score=340686.000000 s hg38.chr12_KI270834v1_alt 109614 30 + 119498 -TAAGGACACAGAACCTCCAGGACCAGTGGT s panTro5.chr12 127395219 30 + 137163284 -TAAGGACACAGAACCTCCAGGACCAGTGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745512 30 + 135337776 -TAAGGACACAGAACCTCCAGGACCAGTGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8259063 30 - 8369578 -TAAGGACACAGAGCCTCCAGGACCAGTGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97917153 30 + 106955855 -TGAGGACATAGAACCTCCAGGACCAGTGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124032218 30 + 133663169 -TGAGGACATGGAACCTCCAGGACCAGTGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128280410 30 + 137757926 -TGAGGACATGGAACCTCCAGGACCAGTGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678933 30 - 16319837 -TGAGGACATGGAACCTCCAGGACCAGTGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302858 30 + 20526591 -TGAGGACATGGAACCTCCACGACCAGCGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119274271 30 + 128539186 -TGAGGACATGGAACCTCCAGGACCAGTGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625785 30 + 6255621 -TGAGGACATGGAACCTCCAGGACCAGTGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4652154 30 - 8658521 -TGAGGACATGGACCCTCCAGGACCAGTGGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855792 30 + 124281992 -TGAGGACATGGAACCTCCAGGACCAGTGGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497935 30 - 9212255 -TGAGGACATGGAACCTCCAGGACCAGTGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916967 30 + 4466143 -TGAGGACATGGAACCCCCAGGACCAGTGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619906 30 + 5364348 -TGAGGACATGCAACCTCCGGGACCAGTGGT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6755776 21 - 9870158 -CACAGACTTGGAA---------CCGGTGGC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4341817 30 + 7922563 -CACAGACTTGGAACCTCGGGAGCCAGTGGC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124834760 16 + 151834684 ---------------CCTTGGGACAAATGGC i mm10.chr5 C 0 C 0 s canFam3.chr26 33190227 25 - 38964690 -TGCAGACTTAGAAC-----AGCCCGCTGGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 880129 30 - 1116856 TGGGAGACTTAGAGGCAGCAGGAC-AGTGGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9502642 21 - 31815103 I a score=484446.000000 s hg38.chr12_KI270834v1_alt 109644 40 + 119498 CACTGGGCACCCCTTCCCTCTGTGCACCATGAGGCTGGCC s panTro5.chr12 127395249 40 + 137163284 CACTGGGCACCCCTTCCCTCTGTGCACCATGAGGCTGGCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745542 40 + 135337776 CACTGGGCACCCCTTCCCTCTGTGCACCATGAGGCTGGCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8259093 40 - 8369578 CACTGGGCACCCCTTCCCTCTGTGCACCATGAGGCTGGCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97917183 40 + 106955855 CACTGGGCACCCCTTCCCTCTGTGCACCACGAGGCTGGCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124032248 40 + 133663169 CACTGGGCACCCCTTCCCTCTGTGCACGACAAGGCTGGCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128280440 40 + 137757926 CACTGGGCACCCCTTCCCTCTGTGCACGACAAGGCTGGCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10678963 40 - 16319837 CACTGGGCACCCCTTCCCTCTGTGCACGACAAGGCTGGCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302888 40 + 20526591 CACTGGGCACCCCTTCCCTCTGTGCACGACAAGGCTGGCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119274301 40 + 128539186 CACTGGGCACCCCTTCCCTCTGTGCACGACAAGGCTGGCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625815 40 + 6255621 CACTGGGCACCCCTTCCCTCTGTGCACGACAAGGCTGGCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4652184 40 - 8658521 CACTGGGCACCCCTTCCCTCTGTGCATGACGAGGCTGGCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855822 32 + 124281992 CACTGGGCACTTCTTCCCTCTGTGTACCACGA-------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497965 32 - 9212255 CACTGGGCACCTATTCCCTCTGTGCACCACGA-------- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2916997 30 + 4466143 CACTGGGCACCTCTT--CTCTGTGCACCATGA-------- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619936 32 + 5364348 CACTGGGCACCTCTTCCCTCTGTGCACCACGA-------- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9502663 40 - 31815103 CACTGGACGCCCCTTCCCTCTGTGTACCATGAGGCTGGCC i micMur3.chr21 I 21 I 100 s proCoq1.NW_012154285v1 6755797 40 - 9870158 CACTGGACACCCCTTCCCTCTGTGTACCATGAGGCTGGCC i proCoq1.NW_012154285v1 C 0 I 118 s otoGar3.GL873618 4341847 36 + 7922563 CACTGGGTACC----GGCTCTGTGTTCTCTGAGCCTGGCC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124834776 32 + 151834684 CACTGGCTGCGTCTCT------TACACTGTGAGACAGG-- i mm10.chr5 C 0 C 0 s canFam3.chr26 33190252 34 - 38964690 TCCTGGGCATCCCTTCCTTCTG-GCACCCTGGGGC----- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 880159 38 - 1116856 TATGGGACATCTGTTCCTTCTGTCTAC--TGAGGTTCGCC i dasNov3.JH568189 C 0 C 0 a score=2052560.000000 s hg38.chr12_KI270834v1_alt 109684 219 + 119498 TGGAGCCCTGGCT-GGCCACCTGGAGGTGA-GGGGTGGC-TTCACTCCATGAGGGAGGAGAGGGGCT-AGCACGGGCAGCA-CAGT-GGGCAGGGGCCA-TCAGAG------------GCAAAAGCAGCTTCCCACAGAAGCTCAGGA---GCGCAGCACATTCT-AAGGACTAGCT-------CTGGGCCGG-----------------------G------------------------AGGAGG---------------CCGGAGTCGCT--------------------------------------------TCTGGGACCTG--------TGATTGCTCTCCCTCCTGCAGT---CTCCT s panTro5.chr12 127395289 219 + 137163284 TGGAGCCCTGGCT-GGCCACCTGGAGGTGA-CGGGTGGC-TTCACTCCACGAGGGAGGAGAGGGGCT-AGCACGGGCAGCA-CAGT-GGGCAGGGGCCA-TCAGAG------------GCAAAAGCAGCTTCCCACAGAAGCTCAGGA---GCGCAGCACATTCT-AAGGACTAGCT-------CTGGGCCGG-----------------------G------------------------AGGAGG---------------CCAGAGTCGCT--------------------------------------------TCTGGGACCTG--------TGATTGCTCTCCCTCCTGCAGT---CTCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745582 219 + 135337776 TGGAGCCCTGGCT-GGCCACCTGGAGGTGA-CGGGTGGC-TTCACTCCACGAGGGAGGAGAGGGGCT-AGCACGGGCAGCA-CAGT-GGGCAGGGGCCA-TCAGAG------------GCAAAAGCAGCTTCCCACAGAAGCTCAGGA---GCGCAGCACATTCT-AAGGACTAGCT-------CTGGGCCGG-----------------------G------------------------AGGAGG---------------CCGGAGTCGCT--------------------------------------------TCTGGGACCTG--------TGATTGCTCTCCCTCCTGCAGT---CTCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8259133 218 - 8369578 TGGAGCCCTGGCT-GGCCACCTGGAGGTGA-GGGGTGGC-TTCACTCCACGAGGGAGGAGAGGGGCT-AGCACGGGCAGCA-CAGT-GGGCAGGGGCCA-TCAGAG------------GCAAAAGCAGCTTCCCACAGAAGCT-----------CAGCACATTCT-AAGGACTAGCT-------CT-GGCCGG-----------------------G------------------------AGGAGG---------------CGGGAGTCGCT--------------------------------------------TCTGGGACCTGTGATTGATTGATTGCTCTCCCTCCTGCAGT---CTCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97917223 219 + 106955855 TGGAGCCCTGGCT-GGCCACCTAGAGGTGA-GGGGTGGC-TTCACTCCACGAGGGAGGAGAGGGGCT-AGCATGGGCAGCA-CAGT-GGGCAGGGGCCA-TTGGAG------------GCAAAAGCAGTTTCCTGCAGAAGCTCAGGA---GCGCAGCACGTTCT-AAGGACTGGCT-------CTGGGCCGG-----------------------G------------------------AGGAGG---------------CAGGAGTCGCT--------------------------------------------TCTGGGACCTG--------TGATTGCTCTCCCTCCTGCAGT---CTCCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124032288 219 + 133663169 TGGAGCCCTGGCT-GGCCACCTGGAGACGA-GGGGTGGC-TTCACTCCACGAGGGAGGGGAGGGGCT-CGCAAGGGCAGCA-CAGT-GGGCAGACGCCA-TCAGAG------------GCAAAAGCAGCTTCCCACAGCAGCTCAGGA---GCGCAGCACATTCT-AAGGACTAGCT-------CTGGGCAGG-----------------------G------------------------AGGAAG---------------CAGGAGTGGCT--------------------------------------------TCTGGGACCTG--------GGATTGCTCTCCCTCCTGCAGT---CTCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128280480 219 + 137757926 TGGAGCCCTGGCT-GGCCACCTGGAGACGA-GGGGTGGC-TTCACTCCACGAGGGAGGGGAGGGGCT-CGCAAGGGCAGCA-CAGT-GGGCAGACGCCA-TCAGAG------------GCAAAAGCAGCTTCCCACAGCAGCTCAGGA---GCGCAGCACATTCT-AAGGACTAGCT-------CTGGGCAGG-----------------------G------------------------AGGAAG---------------CAGGAGTGGCT--------------------------------------------TCTGGGACCTG--------GGATTGCTCTCCCTCCTGCAGT---CTCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10679003 219 - 16319837 TGGAGCCCTGGCT-GGCCACCTGGAGACGA-GGGGTGGC-TTCACTCCACGAGGGAGGGGAGGGGCT-CGCAAGGGCAGCA-CAGT-GGGCAGACGCCA-TCAGAG------------GCAAAAGCAGCTTCCCACAGCAGCTCAGGA---GCGCAGCACATTCT-AAGGACGAGCT-------CTGGGCAGG-----------------------G------------------------AGGAAG---------------CAGGAGTGGCT--------------------------------------------TCTGGGACCTG--------GGAATGCTCTCCCTCCTGCAGT---CTCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12302928 210 + 20526591 TGGAGCCCTGGCT-GGCCACCTGGAGACGA-GGGGTGGC-TTCACTCCAC---------GAGGGGCT-CGCAAGGGCAGCA-CAGT-GGGCAGACGCCA-TCAGAG------------GCAAAAGCAGCTTCCCACAGCAGCTCAGGA---GCGCAGCACATTCT-AAGGACTAGCT-------CTGGGCAGG-----------------------G------------------------AGGAAG---------------CAGGAGTGGCT--------------------------------------------TCTGGGACCTG--------GGATTGCTCTCCCTCCTGCAGT---CTCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119274341 219 + 128539186 TGGAGCCCTGGCT-GGCCACCTGGAGGCAA-GGGGTGGC-TTCACTCCACGAGGGAGGGGAGGGGCT-AGCAAGGGCAGCA-CAGT-GGGCAGACGCCA-TCAGAG------------GCAAAAGCAGCTTCCCACAGCAGCTCAGGA---GCGCAGCACATTCT-AAGGACTAGCT-------CTGGGCAGG-----------------------G------------------------AGGAAG---------------CAGGAGTGGCT--------------------------------------------TCTGGGACCTG--------GGATTGCTCTCCCTCCTGCAGT---CTCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 625855 219 + 6255621 TGGAGCCCTGGCT-GGCCACCTGGAGATGA-GGGGTGGC-TTCACTCCACGAGGGAGGGGAGGGGCT-CGCAAGGGCAGCA-CAGT-GGGCAGACGCCA-TCAGAG------------GCAAAAGCAGCTTCCCACAGAAGCTCAGGA---GCACAGCACATTCT-AAGGACTAGCT-------CTGGGCAGG-----------------------G------------------------AGGAAG---------------CAGGAGTGGCT--------------------------------------------TCTGGGACCTG--------GGATTGCTCTCCCTCCTGCAGT---CTCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4652224 219 - 8658521 TGGAGCCCTGGCT-GGCCACCTGGAGGCGA-GGGATGGC-TTCACTCCATGAGGGAGGGGAGAGGCT-AGCAAGGGCAGCA-CAGT-GGGCAGACGCCA-TCAGAG------------GCAAAAGCAGCTTCCCACAGAAGCTCAGGA---GCGCAGCACATTCT-AAGGACTAGCT-------CTGGGCAGG-----------------------G------------------------AGGAAG---------------CAGGAGTGGCT--------------------------------------------TCTGGGACCTG--------GGATTGCTCTCCCTCCTGCAGT---CTCCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114855854 212 + 124281992 ---------GGCT-GGCCACCTGGAGGTGA-GGGGTGGC-TTTACTCCACGAGGGAGGGCAGGGGCT-AGCTCGGGCAGCG-CAGT--GGCAGAGGCCA-TCACAG------------GCAAAAGGAGCTTCCCACAGAGCCTCAGGA---GCACAGAACATTCT-CAGGACTAGCT-------GTGGGCAGG-----------------------G------------------------AGGAGG---------------CAGGAGTCACC--------------------------------------------TTTGGGACCTG--------CTGTTGCTCCCCCTCTGGCAGTGTTCTCCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 497997 211 - 9212255 ---------GGCT-GGCCACCTGGAGTTGA-GGGGTGGC-TTCACTCCCCGAGGCAGGGCAGGGGCT-AGCTGGGGCAGCG-CAGT--GGTGGAGGCCA-TCACAG------------GCAAAAGCAGCTTCCCACAGAGCCTCAGGA---GCACAGAACATTCT-CAGGACTAGCT-------GTGGGCAGG-----------------------G------------------------AGGAGG---------------CAGGAGTTGTC--------------------------------------------TCTGGGACCTG--------CTGTTGCTCCCCCTCTGGCAGTGTCCTCC- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2917027 193 + 4466143 ---------GGCT-GGCCACCTGGAGGTGAGGGGGTGGC-TTCACTCCCCGAGGGAGGGCAGGGGCT-AGCTCGGGCAGCA-CAGT--GGTGGAGGCCA-T--------------------------------CACAGAGCCTCAGGA---GCACAGCACATTCC-CAGGACTAGCT-------GTGGGCAGG-----------------------G------------------------AGCGGG---------------CAGGAGTCGCC--------------------------------------------TCTGGGACCTG--------CTGTTGCTCCCCCTCTGGCAGTGTCCTCCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1619968 212 + 5364348 ---------GGCT-GGCCACCTGGAGGTGA-GGGGTGGC-TTCACTCCACGAGGGAGGGCAGGGGCT-AGCTCGGGCAGCG-CAGT--GGCGGAGGCCA-TCACAG------------GCAAAAGCAGCTACCCACAGAGCCTCAGGA---GCACAGAACATTCT-CAGGACTAGCT-------GTGGGCAGG-----------------------G------------------------AGGAGC---------------CAGGAGTCGCC--------------------------------------------TCTGGGACCTG--------CTGTTGCTCCCCCTCTGGCAGTGTCCTCCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4341883 221 + 7922563 TGGATCCCTGGCCAAGCCGGCTGGAGGCAA-GGAGTAGCTTTTACTCCAAGAGGGAGGGGCAGGGTT-GAACACTGCAGGA-GAGAAGGGCAGAGACCA-GTCCCA------------GCAAAAGAGGCTTCAGCCAGACCCTCAGAA---GTACAG-ACAGTGG-AAGGAATAGCT-------CTGGGCTGG-----------------------G------------------------AGAAGG---------------TAGTAGTTACC--------------------------------------------GCCGGGACCTG--------CTGTTTCTCCCCCTCCCGTGAT---CTCCT i otoGar3.GL873618 C 0 I 3 s mm10.chr5 124834808 127 + 151834684 --------------------------------------------------GAGGCAG-----------CGCCTGGGCAGGA-CAGA------------------------------------ATGCAGCTTCTGCCAGAAACGCAGGA---GCATTA-ACAATCT-CAGCAACAGCT-------CTGGGCAGC-----------------------A------------------------AGT---------------------------CC--------------------------------------------TCCCACCCCAC--------CTGCTTCGTCCTCCCCGACCAC---CTCCT i mm10.chr5 C 0 I 4 s canFam3.chr26 33190286 246 - 38964690 -----------CA-GGCCTGCTGGAGGGGA-GGAGTGGC-TTTACTCTCCAAGGGTGGAGCAGGGT---------GGAGCATCAGC-CAGCCATGGGCC-TGAAAGCCTACAATCTTCACAGGGGCAGCTCTAGGCAGTGCCGTAGAATAGGGACTCCACTTTCTGGAAGACAAACTGCCACCACTGGGCGGGAGCCCTGGCACATGACACAGGGTG------------------------AGAATG---------------CAGTAGTGACT--------------------------------------------GA-GGGGCCAG--------CTGTTTCTGCCCCTCCCACAGC---CTCCC i canFam3.chr26 C 0 I 10 s dasNov3.JH568189 880197 303 - 1116856 -TGAGTCCAGGCC-TGGCTGCCAGCAGTGA--CAGTGGC-TTTACTCCAGAAAGGAGGGGCAGGGCCGAGCACTAGCAAGA-CAAAAGGGCAGAGAGTAGTCACAG------------ACCCAAGGAGCTTCTGCCAGAACCTCTGAA---GGGCAGAGCGTTCT-AAGGAATAGCT-------CTGGGCTGT-----------------------GAGTTGTGGCTGGGGACCCTCTTTCAGGAAGTGCAACCACCACTTCCAGGGGCTGCTGAGATCTAGACAAGTGCCTGTGGACAAGAACGTACTGGGCTCTGCTCGGAACCTG--------CTACTTCGGCTCCTCCCACAGT---CCCCT i dasNov3.JH568189 C 0 I 4 e micMur3.chr21 9502703 100 - 31815103 I e proCoq1.NW_012154285v1 6755837 118 - 9870158 I a score=3273139.000000 s hg38.chr12_KI270834v1_alt 109903 207 + 119498 AGCCCTCCTTCAGGTGTTTG-TTTAATAAAAGACAC---AAAACAGAAGG-AAGGCAGGTTTAGAAAATAAAGTTTGTTGGGATCTTAAACATTTTGGATA---------------------------------------------------------AAAC-TAAC--AAAAAAATATGAACACACATTCAGGTTGTGGTGCTATGAGGAGT--AGCGTCATCTTATTTAGTTCCT-TGAGATACACGCACGGCTGCTCGGTGATCGGTGCCGC s panTro5.chr12 127395508 203 + 137163284 AGCCCTCCTTCAGG----TG-TTTAATAAAAGACAC---AAAACAGAAGG-AAGGCAGGTTTAGAAAATAAAGTTTGTTGGGATCTTAAACATTTTGGATA---------------------------------------------------------AAAC-TAAC--AAAAAAATATGAACACACATTCAGGTTGTGGTGCTATGAGGAGT--AGCGTCATCTTATTTAGTTCCT-TGAGATACACGCACGGCTGCTCGGTGATCGGTGCCGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125745801 202 + 135337776 AGCCCTCCTTCAGG----TG--TTAATAAAAGACAC---AAAACAGAAGG-AAGGCAGGTTTAGAAAATAAAGTTTGTTGGGATCTTAAACATTTTGGATA---------------------------------------------------------AAAC-TAAC--AAAAAAATATGAACACACATTCAGGTTGTGGTGCTATGAGGAGT--AGCGTCATCTTATTTAGTTCCT-TGAGATACACGCACGGCTGCTCGGTGATCGGTGCCGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8259351 202 - 8369578 AGCCCTCCTTCAGG----TG-TTTAATAAAAGACAC---AAAACAGAAGG-AAGGCAGGTTTAGAAAATAAAGTTTGTTGGGATCTTAAACATTTTGGATA---------------------------------------------------------AAAC-TAAC---AAAAAATATGAACACACATTCAGGTTGTGGTGCTATGAGGAGT--AGCGTCATCTTATTTACTTCCT-TGAGATACACGCACGGCTGCTTGGTGATCGGTGCTGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97917442 204 + 106955855 AGCCCTCCTTCAGG----TG-TTTAATAAAAGACAC---AAAACAGAAGG-AAGGCAGGTTTAGAAAATAAAGTTTGTTGGGATCGTAAACATTTTGGATA---------------------------------------------------------AAACTTAAC--AAAAAAATATGAACACACATTCAGGTTGTGGTGCTATGAGGAGT--AGCGTCATCTTATTTAGTTCCT-TGAGATACACGCACGGCTGCTCGGTGATCGGTGCCAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124032507 204 + 133663169 AGCCCTCCTTCAGG----TG-TTTAATAAAAGACAC---AAAACAGAAGG-AAGGCGGGTTTAGAAAATAAAGTTTGTTGGGATCTTAAACATTTTGGATA---------------------------------------------------------AAAC-TAAC-AAAAAAAATATGAACACACATCCAGGTTGTAGTGCCATGAGGAGG--AGCGTCATCTTATTTAGTTCCT-TGAGATACACGCACGGCTGCTCGGTGATCGGTGCCGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128280699 204 + 137757926 AGCCCTCCTTCAGG----TG-TTTAATAAAAGACAC---AAAACAGAAGG-AAGGCGGGTTTAGAAAATAAAGTTTGTTGGGATCTTAAACATTTTGGATA---------------------------------------------------------AAAC-TAAC-AAAAAAAATATGAACACACATCCAGGTTGTAGTGCCATGAGGAGG--AGCGTCATCTTATTTAGTTCCT-TGAGATACACGCGCGGCTGCTCGGTGATCGGTGCCGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10679222 204 - 16319837 AGCCCTCCTTCAGG----TG-TTTAATAAAAGACAC---AAAACAGAAGG-AAGGCGGGTTTAGAAAATAAAGTTTGTTGGGATCTTAAACATTTTGGATA---------------------------------------------------------AAAC-TAAC-AAAAAAAATATGAACACACATTCAGGTTGTAGTGCCATGAGGAGG--AGCGTCATCTTATTTAGTTCCT-TGAGATACACGCACGGCCGCTCGGTGATCGGTGCCGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12303138 200 + 20526591 AGCCCTCCTTCAGG----TG-TTTAATAAAAGACAC---AAAACAGAAGG-AAGGCGGGTTTAGAAAATAAAGTTTGTTGGGATCGTAAACATTTTGGATA---------------------------------------------------------A-----AAC-AAAAAAAATATGAACACACATTCAGGTTGTAGTGCCATGAGGAGT--AGCGTCATCTTATTTAGTTCCT-TGAGATACACGCACGGCTGCTCGGTGATCGGTGCCGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119274560 204 + 128539186 AGCCCTCCTTCAGG----TG-TTTAATAAAAGACAC---AAAACAGAAGG-AAGGCGGGTTTAGAAAATAAAGTTTGTTGGGATCTTAAACATTTTGGATA---------------------------------------------------------AAAC-TAAC-AAAAAAAATATGAACACACATTCAGGTTGTGGTGCCATGAGGAGT--AGCGTCATCTTATTTAGTTCCT-TGAGATACACGCACGGCTGCTTGGTGATCGGTGCCGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 626074 205 + 6255621 AGCCCTCCTTCAGG----TG-TTTAATAAAAGACAC---AAAACAGAAGG-AAGGCGGGTTTAGAAAATAAAGTTTGTTGGGATCGTAAACATTTTGGATA---------------------------------------------------------AAAC-AAACAAAAAAAAATATGAACACACATTCAGGTTGTAGTGCCATGAGGAGT--AGCGTCATCTTATTTAGTTCCT-TGAGATACACGCACGGCTGCTCGGTGATCGGTGCCGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4652443 205 - 8658521 AGCCCTCCTTCAGG----TG-TTTAATAAAAGACAC---AAAACAGAAGG-AAGGCGGGTTTAGAAAATAAAGTTTGTTGGGATCTTAGACATTTTGGATA---------------------------------------------------------AAAC-TAACAAAAAAAAAAATGAACACACATTCAGGTTGTGGTGCCATGAGGAGT--AGCGTCATCTTATTTAGTTCCT-TGAGATACACGCACAGCTGCTCGGTGATCGGTGCCGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114856066 254 + 124281992 AGCCC----TCAGG----TGGTTTAATAAAAGACAC---AAAACAGAAGG-AAGGCAGGTTTAGAAAATAAAGTTTGTTGGGATCTTAAACATTTTGGATAAAACTAACAAAATATGAACACACGTTCAGGCTGTGGTGCTGTGAGGAGCAGCGTCAGAAAC-TAAC---AAAAAATATGAACGCACGTTCAGGCGGTGGTGCTGTGAGGAGC--AGCATCAGCTTATTCAGGCCCT-TGAG--ACGCACACAGGTGCTCAGTGATCGGTGCTGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 498208 196 - 9212255 AGCCC----TCAGG----TGGTTTAATAAAAGACAC---AAAACAGAAGG-AAGGCAGGTTTAGAAAATAAAGTTTGTTGGGATCTTAAACATTTTGGTT----------------------------------------------------------AAAC-TAAC---AAAAAATATGAACACACGTTCAGGCTGTGGTGCTGTGAGGAGT--AGCGTCGTCTTATTTAGTCCCT-TGAG--ACACACACAGGAGCTCAGTGATCGGTGCCGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2917220 199 + 4466143 AGCCC----CCAGG----TGGTTTAATAAAAGACAC---AAAACAGAAGGTAAGGCAGGTTTAGAAAATAAAGTTTGTTGGGATCTTAAATATTTTGGATA---------------------------------------------------------AAAC-TAAC--AAAAAAATATGAACACACGTTCAGGCTGTGGTGCTGTGAGGAGT--AGCGTCATCTTATTTAGTCCCT-TGAG--ACACACACAGGTGCTCAGTGATCGGTGCCGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1620180 197 + 5364348 AGCCC----TCAGG----TGGTTTAATAAAAGACAC---AAAACAGAAGG-AAGGCAGGTTTAGAAAATAAAGTTTGTTGGGATCTTAAACATTTTGGATA---------------------------------------------------------AAAC-CAAC---AAAAAATATGAACACACGTTCAGGCTGTGGTGCTGTGAGGAGT--AGCGTCATCTTATTTAGTCCCT-CGAG--ACACACACGGGTGCTCAGTGATCGGTGCCGC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9502803 208 - 31815103 AGCCCTCCCTCAGG----TGGTTTAATGAAAGACAC-AAAAAACAGAAAG-AAGGCAGGTTTAGAAAATAAAGTTTGTTGGGATCTTAAACATTTTGGATA---------------------------------------------------------AACC-TAACAAAAAAAAATATGAACACACATTCAGGTTGCGGTGCTTTGCGGAGC--ATCGTCATCTTATTTAGTTCCT-TGAGCTACACACACAGCTGCTCGGTGGTGGGCGCCGC i micMur3.chr21 I 100 I 367 s proCoq1.NW_012154285v1 6755955 207 - 9870158 AGCCCTCCCTCAGG----TGGTTTAATAAAAGACACAAAAAAACAGAAAG-AAGGCAGGTTTAGAAAATAAAGTTTGTTGGGATCTTAAACATTTTGGATA---------------------------------------------------------AACC-TAAC--AAAAAAATATGAACACACATTCAGGTTGCGGTGCTATGAGGAGT--AACGTCATCTTATTTAGTTCCT-TGAGCTATACACACAGCTGCTCGGTGATCGGTGCCGC i proCoq1.NW_012154285v1 I 118 C 0 s otoGar3.GL873618 4342107 203 + 7922563 AGCCCTCCCTTGG------GATTTAATAAAAGACAC---AAAACAGAAAG-AAGGCAGGTTTAGAAAATAAAGTTTGTTGGGATCTTAAACATTTTGGATA---------------------------------------------------------AAAC-TAAC---AAAAAATATGAACACACGTTCAGGTTGTGGTGCTATGAGGAGTAAAACTTCATCTTATTTAGTTCCT-TTAGATACACACACAGTTGCTTGGTGATCGGTGCCGC i otoGar3.GL873618 I 3 C 0 s mm10.chr5 124834939 181 + 151834684 AGTCC----CTCGG----TG-CTTCA-AAAAGACTC---GGAGGAAAAGG-AGGGCGGGTTTAGAAAATAACATTTGTT-GGATCCTGAACA-TCTGGATG---------------------------------------------------------AAAC-TAACAAAAAAAATTATGAACACACAATCAGGTTGGGGCAACATCAGGGTT--GAGGTCATCTTGCTAAGATC-----AGGAGC---CACAGCTGCTTGGTAA---------- i mm10.chr5 I 4 C 0 s canFam3.chr26 33190542 203 - 38964690 GCTCCTCCCTCGGA----TAGCTTAATAAAAGACAC---AAAACAGAAAG--AGGCAGGTTTAGAAAATAAAGTTTGTTGGGATCTTGAACATTTTGGATA---------------------------------------------------------AAAC-TAAC---AAAAACTATGAACACACATTCAGATTGTGGTGATATGAGAAGT--AACATCATCTTATTTAGTTCCTGTGATATACACATACAGCTGGTCAGCTACCGGTGCTGC i canFam3.chr26 I 10 C 0 s dasNov3.JH568189 880504 203 - 1116856 GGCCCTCCCTCGGG----TAGTTTAATAAAAGACAC---AAAACAGAAAG-AAGGCAGGTTTAGAAAATAAAGTTTGTTGGGATCTTGAACATTTTGGACA---------------------------------------------------------AAAC-TAAC---AAAAAATATGGACACACATTCAGGTCATGTTGATGTGAAGAGT--AACATCATCTTATTTAGTTCCTGTGACATATACATACAGCTGCTCAGGTACCAG-GCTGC i dasNov3.JH568189 I 4 C 0 a score=1523285.000000 s hg38.chr12_KI270834v1_alt 110110 148 + 119498 CCTGGGAAAGGTT------------------------------GGTCAGGAGGTGACAGGGGTCTCCAGGAGGAGCTCGGGAGGTGACAAGGGTCTCCAGGAGGGAGCAGGGGCTGCT--------CGGCCAGGCTGCCCTGGAGCTT---GAGG--ATAAG--GTCAAGGTTGG--T----ATGTGTTGCTCCGACTT s panTro5.chr12 127395711 148 + 137163284 CCTGGGAAAGGTT------------------------------GGTCAGGAGGTGACAGGGGTCTCCAGGAGGAGCTCGGGAGGTGACAAGGGTCTCCAGGAGGGAGCAGGGGCTGCT--------CGGCCAGGCTGCCCTGGAGCTT---GAGG--ATAAG--GTCAAGGTTGG--T----ATGTGTTGCTCCGACTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125746003 147 + 135337776 CCTGGGAAAGGTT------------------------------GGTCAGGAGGTGAC-GGGGTCTCCAGGAGGAGCTCGGGAGGTGACAAGGGTCTCCAGGAGGGAGCAGGGGCTGCT--------CGGCCAGGCTGCCCTGGAGCTT---GAGG--ATAAG--GTCAAGGTTGG--T----ATGTGTTGCTCCGACTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8259553 146 - 8369578 CCTGGGAAAGGTT------------------------------GGTCAGGTGGTGAC--GGGTCTCCAGGAGGAGCTCGGGAGGTGACAAGGGCCTCCAGGAGGGAGCAGGGGCTGCT--------CGGCCAGGCTGCCCTGGAGCTT---GAGG--ATAAG--GTCAAGGTTGG--T----ATGTGTTGCTCCAACTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97917646 105 + 106955855 CCTGGGAAA---------------------------------------------GACAGGGGTCTCCAGGAGGAGCTCGGGAGGTGACAAGGGTCTCCAAGAGGGAGCAGGGGCTGCT--------CG---------------------------------G--GTCAAGGTTGG--T----ATGTGTTGCTCCGACTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124032711 178 + 133663169 CCTGGGAAGGGTTGGTCAGGAGGTGACGGGGTCTCCAGGAGGAAGTCGGGAGGTGACAGGGGTCTCCAGGAGGAAGTCGGGAGGTGACAGGGGTCTCCAGGAGGGAGCAGGGGCTGCT--------CGGCCAGGCTGCCCTGGAGCCT---GAGG--ATAAG--GTCAAGGATGG--T----ATGTGTTGCTCCGACTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128280903 177 + 137757926 CCTGGGAAGGGTTGGTCAGGAGGTGACGGGGTCTCCAGGAGGAAGTCGGGAGGTGAC-GGGGTCTCCAGGAGGAAGTCGGGAGGTGACAGGGGTCTCCAGGAGGGAGCAGGGGCTGCT--------CGGCCAGGCTGCCCTGGAGCCT---GAGG--ATAAG--GTCAAGGATGG--T----ATGTGTTGCTCCGACTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10679426 146 - 16319837 CCTGGGAAAGGT-------------------------------GGTCAGGAGGCGAC-GGGGTCTCCAGGAGGAAGTCGGGAGGTGACAGGGGTCTCCAGGAGGGAGCAGGGGCTGCT--------CGGCCAGGCTGCCCTGGAGCCT---GAGG--ATAAG--GTCAAGGATGG--T----ATGTGTTGCTCCGACTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12303338 147 + 20526591 CCTGGGAAAGGTT------------------------------GGTCAGGAGGTGAC-GGGGTCTCCAGGAGGAAGTCAGGAGGTGACAGGGGTCTCCAGGAGGGAGCAGGGGCTGCT--------CGGCCAGGCTGCCCTGGAGCCT---GAGG--ATAAG--GTCAAGGATGG--T----ATGTGTTTCTCCGACTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119274764 147 + 128539186 CCTGGGAAAGGTT------------------------------GGTCAGGAGGTGAC-GGGGTCTCCAGGAGGAAGTCGGGAGGTGACAGGGGTCTCCAGGAGGGAGCAGGGGCTGCT--------CGGCCAGGCTGCCCTGGAGCCT---GAGG--ATAAG--GTCAAGGTTGG--T----ATGTGTTGCTCCGACTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 626279 147 + 6255621 CCTGGGAAAGGTT------------------------------GGTCAGGAGGTGAC-GGGGTCTCCAGGAGGAAGTTGGGAGGTGACAGGGGTCTCCAGGAGGGAGCAGGGGCTGCT--------CGGCCAGGCTGCCCTGGAGCCT---GAGG--ATAAG--GTCAAGGATGG--C----ATGTGTTGCTCCGACTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4652648 147 - 8658521 CCTGGGAAAGGTT------------------------------GGTCAGGAGGTGAC-AGGGTCTCCAGGAGGAAGTCAGGAGGTGACAGGGGTCTCCAGGAGGGAGCAGCGGCTGCT--------CGGCCAGGCTGCCCTGGAGCCT---GAGG--ATAAG--GTCAAGGTTGG--T----ATGTGTTGCTCCGACTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114856320 117 + 124281992 TCTCAGAAAGGTT------------------------------GGTCAGGAGGTGAC-------------------------------AGGGGTCTCTAGGAGGGAGCAGGGGCTGCT--------CGGCCAGGCTGCCCTGGAGCCC---GGGG--ATAAG--GTCAAGGTTGG--C----CTGTGTTGTTCTGACTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 498404 118 - 9212255 CCGGGGAAAGGTT------------------------------GGTCAGGAGGTGAA-G-----------------------------GGGGGTCTCCAGGAGGGAGCAGGGGCTGCT--------CGGCCAGGCTGCCCTGGAGCCC---GGGG--ATAAG--GTCAAGGTTGG--T----CTGTGTTGTTCTGACTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2917419 115 + 4466143 CCTGGGAAAGGTT------------------------------GGTCAGGAGGTGAC-------------------------------AGGGGTCTCCAGGAGGGAGCAGGGGCTGCT--------CGGCCAGGCTGCCCTGGAGCCC---AGGG--ATAAC--GTCAAGGTTGG--T----C--TGTTGTTCTGACTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1620377 117 + 5364348 CCTGGGAAAGGTT------------------------------GGTCAGGGGGTGAC-------------------------------AGGGGTCTCCAGGAGGGAGCAGGGGCTGCT--------CGACCAGGCTGCCCTGGAGCCC---GGGG--ATAAG--ATCAAGGTTGG--T----CTGTGTTGTTCTGACTT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6756162 117 - 9870158 CCTGGGAAAGGTC------------------------------TGTGGGGAGGTTAC--------------------------------AGGGTCTCCAGGAGGGAGCAGGGGCTGCT-------TCGCACAGGCTGCCCTGGAGCCC---AGGG--GGAAG--GTCAAGGTTGG--T----ATGTGTTGCTCAGACTT i proCoq1.NW_012154285v1 C 0 I 100 s otoGar3.GL873618 4342310 117 + 7922563 CCTGGGAAAGGTC------------------------------TGTTGGGAGGTTAC--------------------------------TAAGTCTCCAGGAGGGAGCAGGGG-TGCT-------CCAGACAGGCTGCCCTGGAGCCT---GGGG-AGGGAG--GTCAAGGTTGA--T----ATGTGTTGCTCCCACTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124835120 107 + 151834684 ----------------------------------------------------------------------AGGGACTGTGCAG--GGCAGGGGTCTCCAGGAGGGAGCCGAGGCTGCTGCTCTGCTCTCATAGGCTGTCCTGGA-TCT---GTGG------------AGGGATAGCTC----CTTCTCTGCTTTGACTT i mm10.chr5 C 0 C 0 s canFam3.chr26 33190745 123 - 38964690 CCTGGGCAAGGCT------------------------------TGTTGGGAGGTTAC--------------------------------AGGGTCTCCAGGTGGGAGCAGGGGCTGCT-------CCGGACGGGCTGCCCTGGAAATT---GGAGCGAGAGG--GTCAAGGTCGG--TCGGCATGTATTGCTCCGACTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 880707 122 - 1116856 CCTGGGACAAGTT------------------------------GGTCGGGAGGTTGC-------------------------------AGGGGCCTCCAGGTGGGAGCAGGGGCTGCT-------CCATACGGGTTGCCCTGGGGACCAGAGGGG--ACAAGGTGTCAAGGTTGA--T----ATGTGCCGCTCGGACT- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9503011 367 - 31815103 I a score=630674.000000 s hg38.chr12_KI270834v1_alt 110258 66 + 119498 GAGAATGAATTAGGT-GTGTGA----CTGTGTGGCATCGTGAACATC-AGTAGTGACGCAG-CC-GTGGCCTGG s panTro5.chr12 127395859 66 + 137163284 GAGAATGAATTAGGT-GTGTGA----CTGTGTGGCATCGTGAACATC-AGTAGTGACGCAG-CC-GTGGCCTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125746150 66 + 135337776 GAGAATGAATTAGGT-GTGTGA----CTGTGTGGCATCGTGAACATC-AGTAGTGACGCAG-CC-GTGGCCTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8259699 66 - 8369578 GAGAATGAATTAGGT-GTGTGA----CTGTGTGGCATCGTGAACATC-AGTAGTGACGCAG-CC-GTGGCCTGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97917751 66 + 106955855 GAGGATTAATTAGGT-GTGTGA----CTGTGTGGCACTGTGAACATC-AGTAGTGACGCAG-CC-GTGGCCTGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124032889 62 + 133663169 GAG----AATTAGGT-GTGTGA----CTATGTGGCATTGTGAACATC-AGGAGTGACGCAG-CC-GTGGCCGGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128281080 62 + 137757926 GAG----AATTAGGT-GTGTGA----CTATGTGGCATTGTGAACATC-AGGAGTGACGCAG-CC-GTGGCCGGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10679572 62 - 16319837 GAG----AATTAGGT-GTGTGA----CTATGTGGCATTGTGAACATC-AGGAGTGACGCAG-CC-GTGGCCGGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12303485 66 + 20526591 GAGAATTAATTAGGT-GTGTGA----CTATGTGGCATTGTGAACATC-AGGAGTGACGCAG-CC-GTGGCCGGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119274911 66 + 128539186 GAGAATTAATTAGGT-GTGTGA----CTATGTGGCATTGTGAACATC-AGGAGTGACGCAG-CC-GTGGCCTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 626426 62 + 6255621 GAG----AATTAGGT-GTGTGA----CTATGTGGCATTGTGAACATC-AGGAGTGACGCAG-CC-GTGGCCGGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4652795 66 - 8658521 GAGAATTAATTAGGT-GTGTGA----CTATGTGGCATTGTGAACATC-AGGAGTGACGCAG-CC-GTGGCCTGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114856437 67 + 124281992 GAGAATGAAGGAGGCAAAGTGA----CTATCTGGCATTGTGAACATC-AGGAGTGAGGCGG-CT-GTGGCCTGG i calJac3.chr9 C 0 M 3491 s saiBol1.JH378194 498522 66 - 9212255 GAGAATGAATGAGGC-ATGTGA----CTATCCGGCGTTGTGAATATC-AGGAGTGAGGCAG-CT-GTGGCCTGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2917534 50 + 4466143 GAGAATGAATGAGGC-ATGTGA----CTATCTGGC-----------------GTGAGGCAG-CT-GTGGCCTGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1620494 66 + 5364348 GAGAATGAATGAGGC-ATGTGA----CTATCTGGCGTTGTGAACATC-AGGAGTGAGGCAG-CT-GTGGCCTGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4342427 64 + 7922563 ----TGTAATTAGGC-ATGAGA----ATATCTGATTTCATGAACATCGAGTAGTGATGCAGCCC-GAGGCCTGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124835227 43 + 151834684 ----------CAGGC-GATTCATATTCTAGGTGGCAT--------------AGTGATTCAG-CC-ATGGC---- i mm10.chr5 C 0 C 0 s canFam3.chr26 33190868 64 - 38964690 ----CATAATGAGGC-GTGTGA----CTATCTGATTTCATTAACGCTGAGTAGTGATGCAG-CCTGTGGCCTGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 880829 64 - 1116856 ---GTCTAGTTAGGT-GTGTGG----CTATCTGATTTCGTTAATATCGAGTAGTGATACAG-CCTGCGGCCTG- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9503011 367 - 31815103 I e proCoq1.NW_012154285v1 6756279 100 - 9870158 I a score=448277.000000 s hg38.chr12_KI270834v1_alt 110324 38 + 119498 GCTTTGCCT-GC-AGCGCACTTAGGTTACACGGAGCGGGA s panTro5.chr12 127395925 38 + 137163284 GCTTTGCCT-GC-AGCGCACTTAGGTTACACGGAGCGGGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125746216 38 + 135337776 GCTTTGCCT-GC-AGCGCACTTAGGTTACACGGAGCGGGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8259765 38 - 8369578 GCTTTGCCT-GC-AGCGCACTTAGGTTACACGGAGCGGGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97917817 38 + 106955855 GCTTTGTCT-GC-GGCGCACTTAGGTTACACGGAGCGGGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124032951 38 + 133663169 GCTTTGTCC-GC-AGCGCACTTAGGTTACACGGAGCGGGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128281142 38 + 137757926 GCTTTGTCC-GC-AGCGCACTTAGGTTACACGGAGCGGGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10679634 38 - 16319837 GCTTTGTCC-GC-AGCGCACTTAGGTTACACGGAGCGGGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12303551 38 + 20526591 GCTTTGTCC-GC-AGCGCACTTAGGTTACACGGAGCGGGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119274977 38 + 128539186 GCTTTGTCC-GC-AGCGCACTTAGGTTACACGGAGCGGGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 626488 38 + 6255621 GCTTTGTCC-GC-AGCGCACTTAGGTTACACGGAGCGGGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4652861 38 - 8658521 GCTTTGTCC-GC-AGCGCACTTAGGTTACACGGAGCGGGA i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 498588 38 - 9212255 GCTTTGTCC-GC-AGCGCACTTAGGTTACACGGAGCGAGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2917584 38 + 4466143 GCTTTGTCC-GC-AGCGCACTTAGGTTACACGGAGCGAGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1620560 38 + 5364348 GCTTTGTCC-GC-AGCGCACTTAGGTTACACGGAGCGAGA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4342491 39 + 7922563 GCTCTGCCC-ACAAGTGCACTTAGCTCACATGGAGTGGGA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124835270 37 + 151834684 --TGTATCTAGG-AGTGCGCCAAGATCTCATGGCGTGGGG i mm10.chr5 C 0 C 0 s canFam3.chr26 33190932 39 - 38964690 GCTTTGTCC-ACGAGCGCACGGACATTACACAGAGTGGGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 880893 25 - 1116856 ---------------TGCACTTGGATTACATGGAGTGGGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9503011 367 - 31815103 I e proCoq1.NW_012154285v1 6756279 100 - 9870158 I e calJac3.chr9 114856504 3491 + 124281992 M a score=2709011.000000 s hg38.chr12_KI270834v1_alt 110362 239 + 119498 TCAGAAGCAAGCGATTCGGCACACAGGCGTTTGGCCACAGCAATTAGGAAATACATATTCTGCGGCAGGGACACGATCATATTTTGGTGTGAAGAAGAGGGCAAGAGAAGCAGA------AGGAGAATGGGTCGGTAGGTGTG-AAAAG----TGTTTGGCATGCATGGG-ATT----AAACAGAAA--AGGTGTGGCTG------------------------------------------------------------AG--ATT-TCCCAGTGGTGCTCACAGTGCATGGACAGCGCGGGGT------GGGGCAC-------GG--CGGGCT s panTro5.chr12 127395963 243 + 137163284 TCAGAAGCAAGCGATTCAGCACACAGGCGTTTGGCCACAGCAATTAGGAAATACATATTCTGCAGCAGGGACACGATCATATTTTGGTGTGAAGAAGAGGGCAAGAGAAGCAGA------AGGAGAATGGGTCGGTAGGTGTG-AAAAGTGTTTGTTTGGCATGCATGGG-ATT----AAACAGAAA--AGGTGTGGCTG------------------------------------------------------------AG--ATT-TCCCAGTGGTGCTCACAGTGCATGGACAGCGCGGGGT------GGGGCAC-------GG--CGGGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125746254 243 + 135337776 TCAGAAGCAAGCGATTCGGCACACAGGCGTTTGGCCACAGCAATTAGGAAATACATATTCTGCAGCAGGGACACGATCATATTTTGGTGTGAAGAAGAGGGCAAGAGAAGCAGA------AGGAGAATGGGTCGGTAGGTGTG-AAAAGTGTTTGTTTGGCATGCATGGG-ATT----AAACAGAAA--AGGTGTGGCTG------------------------------------------------------------AG--ATT-TCCCAGTGGTGCTCACAGTGCATGGACAGCGCGGGGT------GGGGCAC-------GG--CGGGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8259803 243 - 8369578 TCAGAAGCAAGCGATTCGGCACACAGGCGTTTGGCCACAGCAATTAGGAAATACATATTCTGCAGCAGGGACACGATCATATTTTGGTGTGAAGAAAAGGGCAAGAGAAGCAGA------AGGAGAATGGGTCGGTAGGTGTG-AAAAGTGTTTGTTTGGCATGCATGGG-ATT----AAACAGAAA--AGGTGTGGCTG------------------------------------------------------------AG--ATT-TCCCAGTGGTGCTCACAGTGCATGGACAGCGCGGGGT------GGGGCAC-------GG--CGGGCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97917855 240 + 106955855 TCAGAAGCAAGCGATTCGGCACACAGGCGTTTGGCCACAGCAATTAGGAAATACATATTCTGCAGCAGGGACACGATCATATTTTGGTGTGAAGAAGAGGGCAAGAGAAGCAGA------AGGAGAATTGGTCGGTAGGTGTG-AAAAG----TGTTTGGCATGCATGGGAATT----AAACAGAAA--AGGTGTGGCTG------------------------------------------------------------AG--ATT-TCCTAGTGGTGCTCACAGTGCATGGACAGCGCGGGGT------GGGGCCC-------AG--CGGGCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124032989 237 + 133663169 TCAGAAGCAAGCGATTCGGCACACAGGCGTTTGGCCACAGCAATTAGGAAATACATATTCTGCAGCAGGGACACAATCATATTTTGGTGTGAAGAAGAGGGCAAGAGGAGC---------AGGAGAATTGGTCGGTAGGTGTG-AAAAG----AGTTTGGCATGCATGGGAATT----AAACAGAAA--AGGTGTGGCTG------------------------------------------------------------AG--ATT-ACCTAGTGGTGCTCACAGTGCATGGACAGCGCGGGGT------GGGGCCC-------GG--CGGGCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128281180 237 + 137757926 TCAGAAGCAAGCGATTCGGCACACAGGCGTTTGGCCACAGCAATTAGGAAATACATACTCTGCAGCAGGGACACAATCATATTTTGGTGTGAAGAAGAGGGCAAGAGGAGC---------AGGAGAATTGGTCGGTAGGTGTG-AAAAG----AGTTTGGCATGCATGGGAATT----AAACAGAAA--AGGTGTGGCTG------------------------------------------------------------AG--ATT-TCCTAGTGGTGCTCACAGTGCATGGACAGCGCGGGGT------GGGGCCC-------GG--CGGGCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10679672 237 - 16319837 TCAGAAGCAAGCGATTCGGCACACAGGCGTTTGGCCACAGCAATTAGGAAATACATATTCTGCAGCAGGGACACAATCATATTTTGGTGTGAAGAAGAGGGCAAGAGGAGC---------AGGAGAATTGGTCGGTAGGTGTG-AAAAG----AGTTTGGCATGCATGGGAATT----AAACAGAAA--AGGTGTGGCTG------------------------------------------------------------AG--ATT-TCCTAGTGGTGCTCACAGTGCATGGACAGCGCGGGGT------GGGGCCC-------GG--CGGGCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12303589 237 + 20526591 TCAGAAGCAAGCGATTCGGCACACAGGCGTTTGGCCACAGCAATTAGGAAATACATATTCTGCAGCAGGGACACAATCATATTTTGGTGTGAAGAAGAGGGCAAGAGGAGC---------AGGAGAATTGGTCGGTAGGTGTG-AAAAG----AGTTTGGCATGCATGGGAATT----AAACAGAAA--AGGTGTGGCTG------------------------------------------------------------AG--ATT-TCCTAGTGGTGCTCACAGTGCATGGACAGCGCGGGGT------GGGGCCC-------GG--CGGGCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119275015 297 + 128539186 TCAGAAGCAAGCGATTCGGCACACAGGCGTTTGGCCACAGCAATTAGGAAATACGTATTCTGCAGCAGGGACACAATCATATTTTGGTGTGAAGAAGAGGGCAAGAGGAGC---------AGGAGGATTGGTCGGCAGGTGTG-AAAAG----AGTTTGGCATGCATGGGAATT----AAACAGAAA--AGGTGTGGCTAAGATTTCCTAGTGGTGCTCACAGTGCATGGACAGCGCGGGGTGGGGCCCGNNNNNNNNNNAG--ATT-TCCTAGTGGTGCTCACAGTGCATGGACAGCGCGGGGT------GGGGCCC-------GG--CGGGCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 626526 237 + 6255621 TCGGAAGCAAGCGATTCGGCACACAGGCGTTTGGCCACAGCAATTAGGAAATACATATTCTGCAGCAGGGACACAATCATATTTTGGTGTGAAGAAGAGGGCAAGAGGAGC---------AGGAGAATTGGTCGGTAGGTGTG-AAAAG----AGTTTGGCATGCATGGGAATT----AAACAGAAA--AGGTGTGGCTG------------------------------------------------------------AG--ATT-TCCTAGTGGTGCTCACAGTGCATGGACAGCGCGGGGT------GGGGCCC-------GG--CGGGCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4652899 235 - 8658521 TCAGAAGCAAGCGATTCGGCACACAGGCGTTTGGCCACAGCAATTAGGAAATACATATTCTGCAGCAGGGACACAATCATATTTTGGTGTGAAGAAGAGGGCAAGAGGAGC---------AGGAGAATTGGTCGGTAGGTGTG---AAG----AGTTTGGCATGCATGGGAATT----AAACAGAAA--AGGTGTGGCTG------------------------------------------------------------AG--ATT-TCCTAGTGGTGCTCACAGTGCATGGACAGCGCGGGGT------GGGGCCC-------GG--CGAGCT i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 498626 232 - 9212255 T---GAGCAAGCGATTCGGCACGCAGGCGTTTGGCCGCAGCAGTTAGGAAATACATATTCGGCAGCAGGGGCACGATCATATTTTGGTGTCAAGAAGAGGGCAAGAGGAGC---------AGGAGAATTGGTCGGCAGG-GTG-AAAAG----AGTTTGGCATGCATGGGAATG----AGACAGAAA--AGTTGTGGCTG------------------------------------------------------------AG--ACT-TCCTGGAAGTGCTCACAGTGCACGGACAGCGCGGGGT-------GGGCCT-------GG--CGGGCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2917622 234 + 4466143 TGAGGAGCAAGCTATTCGGCACACAGGCGTTTGGCCACAGCAGTTAGGAAATACATATTCTGCAGCAGGGGCACGGTCATATTTTGGTGTCAAGAAGAGGGCAAGAGGAGCAGA------AGGAGAATTGATCGGCAGG-GTG---AAG----AGTTTGGCATGCATGGGAATG----AGAC--AAA--AGGTGTGGCTG------------------------------------------------------------AG--ACT-TCCTGGAAGTGCTCACAGTGCATGGACAGCGTGGGGT-------GGGCCT-------GG--TGGGCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1620598 236 + 5364348 TGAGGAGCAGGCGACTCGGCACACAGGCGTTTGGGCACAGCAGTTAGGAAATACATACTCTGCAGCAGGGGCACGATCGTATTTTGGTGTC---AAGAGGGCAAGAGGAGCGGA------AGGAGAATTGGTCGGCAGGTGTG-AAAAG----AGTTTGGCATGCATGGGAATG----AGACGGAAA--AGGTGTGGCTG------------------------------------------------------------AG--ACT-TCCTGTAAGTGCTCACAGTGCGTGGACAGCGCGGGCT-------GGGCCT-------GG--CGGGCT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6756379 199 - 9870158 TTAGAAGCAAGCGAC-CGGCACGCAGGTGTTTGGCCACGGCAGATGGTAAATACGTCTTCTGCAGCAGGGACTC------------------------------GGAGGGCAGG---CGGAGGAGAATCGGTGGACAGGTCTG-AAAAG----AATTTGGCATGCACGGGATTA----AAACAAAAA-----TGTGGATG------------------------------------------------------------A---GTT-TCCTAGTAGTGCTCACAGTGCGTGGACAGCGGGCGCC------GGCGGC------------------ i proCoq1.NW_012154285v1 I 100 C 0 s otoGar3.GL873618 4342530 238 + 7922563 TTAGAAGCAAGCGAG-CTGCACGCAGGTGCCTGGCCACAGCAGTTGGTAAATATGTATTCTGCAGCAGGGACACGATCATATTTTGCTGTCAGTAAGAGGACAAGAAAAGCAGA---AGGAGAAGAATTGGTAGACGGGTCTGAAAAAA----AATTTGGCATGCATGGGAAAA----AAATAAACAGAAGGTGTGAATG------------------------------------------------------------AGT-GTT-TTCTAGTGGTGCTCACAGTGCGACGAAGCCGAGGGGC------CATGGCC----------------- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124835307 211 + 151834684 CTAGAAGCAAGCTATT-GGCATGCAGGCG-TTGGCCACAGTG--CCAGTAATA-----TCTTCAGCGGGGACACCATTGTAGCATTGTGTCACTATGGAGCCAGG---------------AGCCAGGTT--TCGACAGG---A-GGAGA----CATTTGGCATGGGTAGG-----------CGAGGA--AGGTGTGGGCG------------------------------------------------------------AGGAGGT-TCCCTGTGGCGCTCACAGTGCGTGGATGAC-TGCGGT------GGCAGGC-------CG--CAGGCC i mm10.chr5 C 0 C 0 s canFam3.chr26 33190971 252 - 38964690 TTAAAAGCAAGCGATTCGGCACACAGGTGTTTGGCCACAGCAATTAGTAAATACATATTCTGCAGCAGGGACACGATCGTATTCTGGTGTCAGTGAGAGGGCAAGAGGAGCAGG------AGAAGAATCTGTTGACAGGTCTG-AAAAA----AATTTGGCATGCATGGGAATTTAAAAAAAAAAAA--AGGTGTGGATG------------------------------------------------------------AGT-TTT-TCCTAGTAGCAATCACAGTGCATCGACAGCCAAGGGT------GAAGGGTTGCCTGGAG--CAGGCC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 880918 253 - 1116856 TCAGAAGCAAGCGATTTGGTTCACAAGTATTTGGCCACAGCAATTAGTAAATACATGTTCTGTATTGGAGACACGATCATATGTTGGTGTCAGTGAAAGGGCGAAAGGAGCAGGATTAGGAGAAAAACCTGTTGATAGTTCTG-AAAA-----AACTTGGCCTGCGTGGGAATG----AAA-AGGAA--AGGTGTGGGTG------------------------------------------------------------AG--CCTGTCCTAGTCGTGGTCGCGGTGCACTGCCGGCGGAAGGCTGAAGGGGCGCCT-------GGGCCAGGCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9503011 367 - 31815103 I e calJac3.chr9 114856504 3491 + 124281992 M a score=1507749.000000 s hg38.chr12_KI270834v1_alt 110601 87 + 119498 TCACACAGTTCTGTCCGTCCCTGAGTGCTTCCTCACCACCTTGCCTCCGTTCACCTGGTCGACCGCCAGGGTCTTCACCTCGGGCTG s panTro5.chr12 127396206 87 + 137163284 TCACACAGTTCTGTCCGTCCCTGAGTGCTTCCTCACCACCTTGCCTCCGTTCACCTGGTCGACCGCCAGGGTCTTCACCTCGGGCTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125746497 87 + 135337776 TCACACAGTTCTGTCCGTCCCTGAGTGCTTCCTCACCACCTTGCCTCCGTTCACCTGGTCGACCGCCAGGGTCTTCACCTCGGGCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8260046 87 - 8369578 TCACACAGTTCTGTCCGTCCCTGAGTGCTTCCTCACCACCTTGCCTCCGTTCACCTGGTCGACCGCCAGGGTCTTCACCTCGGGCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97918095 87 + 106955855 TCACACAGTTCTGTCCGTCCCTGAGTGCTTCCTCACCACCTTGCCTCCGTTCACCTGGTCGACCGCCAGGGTCTTCACCTCGGGCTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124033226 87 + 133663169 TCACACAGTTCTGTCCGTCCCTGAGTGCTTCCTCACCACCTTGCTTCCGTTCACCTGGTCAACCGCCAGGGTCTTCACCTCGGGTTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128281417 87 + 137757926 TCACACAGTTCTGTCCGTCCCTGAGTGCTTCCTCACCACCTTGCTTCCGTTCACCTGGTCAACCGCCAGGGTCTTCACCTCGGGTTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10679909 87 - 16319837 TCACACAGTTCTGTCCGTCCCTGAGTGCTTCCTCACCACCTTGCTTCCGTTCACCTGGTCAACCGCCAGGGTCTTCACCTCGGGTTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12303826 87 + 20526591 TCACACAGTTCTGTCCGTCCCTGAGTGCTTCCTCACCACCTTGCTTCCGTTCACCTGGTCAACCGCCAGGGTCTTCACCTCGGGCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119275312 87 + 128539186 TCACACAGTTCTGTCCGTCCCTGAGTGCTTCCTCACCACCTTGCCTCCGTTCACCTGGTCAACCGCCAGGGTCTTCACCTCGGGCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 626763 87 + 6255621 TCACACAGTTCTGTCCGTCCCTGAGTGCTTCCTCACCACCTTGCTTCCGTTCACCTGGTCAACCGCCAGGGTCTTCACCTCGGGCTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4653134 87 - 8658521 TCACACAGTTCTGTCCGTCCCTGAGTGCTTCCTCACCACCTTGCCTCCGTTCACCTGGTCAACCGCCAGGGTCTTCACCTCGGGCTG i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 498858 87 - 9212255 TCACACAGTTCTGTCGGCCCCCGGGTGCTTCCTCACCACCTTGCCTCCGTTCACCTGGTCAACCGCCAGCGTCTCCACCTCAGGCTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2917856 87 + 4466143 TCACACAGTTCTGTCCGTCCCCGAGTGCTTCCTTACCACCTTGCTTCCGTTCACCTGGTCGACCGCCAGCGTCTCCACCTCAGCCTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1620834 87 + 5364348 TCACACAGTTCTGTCCGTCCCTGAGTGCTTCCTCACCACCTTGCCTCCGTTCACCTGGTCGACCGTCAGCGTCTCCACCTCAGGCTG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9503378 87 - 31815103 TCACACAGTTCTGTCCGTGCCGGGCTGCTTCCGCGCCGCCTTGCCCCCGTTCACCTGGTCCACCGCCAGCGTCTCCACCTCGggctg i micMur3.chr21 I 367 I 65 s proCoq1.NW_012154285v1 6756578 87 - 9870158 TCACACAGTTCTGTCCGTGCCCGGCTGCTTCCTCGCCGCCTTGCCCCCGTTCACCTGGTCGACCGCCAGCGTCTCCACCTCGGGCTG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4342768 87 + 7922563 TCAAACAGTTCTGTCCGTGCCTGGGTGCTTTCTCACAGCTTTGCCTCCGTTCACCTGGTCGACCGCCAGTGTCTCCACCTCAGGCTG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124835518 87 + 151834684 TCACACAGTTCGGTCTGTCCCTGAGTGCTTCCGCACCACCTTGCTTGCATTCACCTGGTCCACGGCCCTCATCTCTCCCTCAGGCTG i mm10.chr5 C 0 C 0 s canFam3.chr26 33191223 87 - 38964690 TCACACAGTTCTGTCCGTCCCTGAGTGCTTCCTCACAACCTTTCCTCCATTCACCTGGTCGACTGCCAGCGTCTCCAGCTCAGGCTG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 881171 87 - 1116856 TCACACGGCTCTGTCCGCCCCTGGGTGCTTCCTCACCACTTTCCCTCCATTCACCTGGTCTACCGCCAGCGTCTCCACCTCGGGCTG i dasNov3.JH568189 C 0 C 0 e calJac3.chr9 114856504 3491 + 124281992 M a score=1176747.000000 s hg38.chr12_KI270834v1_alt 110688 77 + 119498 GGCCTGCGGCGGGGTGGCGTGGTGGATCCGATGTGCCACCCCGACGTGGGCCTTGTGCGGCTTTTCGCGGGCCGGGC s panTro5.chr12 127396293 77 + 137163284 GGCCTGCGGCGGGGTGGCGTGGTGGATCCGATGCGCCACCCCGACGTGGGCCTTGTGCGGCTTTTCGCGGGCCGGGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125746584 77 + 135337776 GGCCTGCGGCGGGGTGGCGTGGTGGATCCGATGCGCCACCCCGACGTGGGCCTTGTGCGGCTTTTCGCGGGCCGGGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8260133 77 - 8369578 GGCCTGCGGCGGGGTGGCGTGGTGGATCCGATGTGCCACCCCGACGTGGGCCTTGTGCGGCTTTTCGCGGGCCGGGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97918182 77 + 106955855 GGCCTGCGGCGGGGTGGCATGGTGGATCCGATGCGCCACCCCGACGTGGGCCTTGTGCGGCTTTTCGCGGGCCGGGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124033313 77 + 133663169 GGCCTGCGGCGGGGTGGCGTGGTGGATCCGATGCGCCACCCCAACGTGGGCTTTGTGCGGCTTTTCGCGGGCCGGGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128281504 77 + 137757926 GGCCTGCGGCGGGGTGGCGTGGTGGATCCGATGCGCCACCCCAACGTGGGCTTTGTGCGGCTTTTCGCGGGCCGGGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10679996 77 - 16319837 GGCCTGCGGCGGGGTGGCGTGGTGGATCCGATGCGCCACCCCAACGTGGGCTTTGTGCGGCTTTTCGCGGGCCGGGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12303913 77 + 20526591 GGCCTGCGGCGGGGTGGCGTGGTGGATCCGATGCGCCACCCCAACATGGGCCTTGTGCGGCTTTTCGCGGGCCGGGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119275399 77 + 128539186 GGCCTGCGGTGGGGCGGCGTGGTGGATCCGATGCGCCACCCCAACGTGGGCCTTGTGCGGCTTTTCGCGGGCCGGGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 626850 77 + 6255621 GGCCTGCGGCGGGGTGGCGTGGTGGATCCGATGCGCCACCCCAACGTGGGCCTTGTGCGGCTTTTCACGGGCCGGGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4653221 77 - 8658521 GGCCTGCGGCGGGGTGGCGTGGTGGATCCGATGCGCCACCCCAACATGGGCCTTGTGCGGCTTTTCGCGGGCCGGGC i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 498945 77 - 9212255 CGCCTGCGGCGGGGCGGCGTGGTGGATCCGATGCGCCACCCCGACGTGGGCCTTATGTGGCTTCTCTCGGGCCGGGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2917943 77 + 4466143 GGCCTGCGGCGGGGCGGCGTGGTGGATCCGATGCGCCACCCCGACGTGGGCCTTATGTGGCTTCTCGCGGGCCGGGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1620921 77 + 5364348 GGCCTGCGGCGGGGCGGCGTGGTGGATCCGATGCGCCACCCCGACGTGGGCCTTATGTGGCTTCTCGCGGGCCGGGC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6756665 77 - 9870158 CGCCTGCGGCGGGGCCACGTGGTGGATGCGGTGGGCCACCCCCACGTGGGCCTTGTGCTGCTTGTCGCGGGCCGGGC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4342855 77 + 7922563 CGCCTGCGGTGGGGCCACATGGTGGATCCGGTGGGCCACTCCCACGTGGGCCTTGTGCTGCTTATCGCGGGCTGGGC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124835605 77 + 151834684 GGCCTGTGATGGAGTGGCATGATGAATGCGGTGAGCCACCCCAACATGCGTCTTGTGTGGCTTATCTCGGGCTGGGC i mm10.chr5 C 0 C 0 s canFam3.chr26 33191310 77 - 38964690 GGTGTGTGGTGGGGCAGCATGGTGGATGCGATGGGCCACCCCCACATGAGCCTTGTGCTGCTGCTCGCGGGCTGGGC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 881258 77 - 1116856 CGCCTGCGGGGGCGCGACGTGGTGGATGCGGTGGGCCACGCCGACGTGGGCCTTGTGCTGCTTCTCGCGCGCCGGGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9503465 65 - 31815103 I e calJac3.chr9 114856504 3491 + 124281992 M a score=1241293.000000 s hg38.chr12_KI270834v1_alt 110765 77 + 119498 TGTGCTGCTCGCC---GCTTCGGTCGGAGGCGATGGGGGGGATGACGAGGGGCCTCTCTTTGATGAGGTGGACCTCGGCG s panTro5.chr12 127396370 77 + 137163284 TGTGCTGCTCGCC---GCTTCGGTCGGAGGCGATGGGGGGGATGACGAGGGGCCTCTCTTTGATGAGGTGGACCTCGGCG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125746661 77 + 135337776 TGTGCTGCTCGCC---GCTTCGGTCGGAGGCGATGGGGGGGATGACGAGGGGCCTCTCTTTGATGAGGTGGACCTCGGCG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8260210 77 - 8369578 TGTGCTGCTCGCT---GCTTCGGTCGGAGGCGATGGGGGGGATGACAAGGGGCCTCTCTTTGATGAGGTGGACCTCGGCG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97918259 77 + 106955855 TGTGCTGCTCGCT---GCTTCGGTCGGAGGCAATGGGGGGGATGACGAGGGGCCTCTCTTTGATGAGGTGGACCTCGGCG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124033390 77 + 133663169 TGTGCTGCTCGCT---GCTTCGGTCAGAGGCGATGGGGGGGATGACGAGGGGCCTCTCTTTGATGAGGTGGACCTCGGCG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128281581 77 + 137757926 TGTGCTGCTCGCT---GCTTCGGTCAGAGGCGATGGGGGGGATGACGAGGGGCCTCTCTTTGATGAGGTGGACCTCGGCG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10680073 77 - 16319837 TGTGCTGCTCGCT---GCTTCGGTCAGAGGCGATGGGGGGGATGACGAGGGGCCTCTCTTTGATGAGGTGGACCTCGGCG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12303990 77 + 20526591 TGTGCTGCTCGCT---GCTTCGGTCAGAGGCGATGGGGGGGATGACGAGGGGCCTCTCTTTGATGAGGTGGACCTCGGCG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119275476 77 + 128539186 TGTGCTGCTCGCT---GCTTCGGTCAGAGGCGATGGGGGGGATGACGAGGGGCCTCTCTTTGATGAGGTGGACCTCGGCG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 626927 77 + 6255621 TGTGCTGCTCGCT---GCTTCGGTCAGAGGCGATGGGGGGGATGACGAGGGGCCTCTCTTTGATGAGGTGGACCTCGGCG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4653298 77 - 8658521 TGTGCTGCTCGCT---GCTTCGGTCAGAGGCGATGGGGGGGATGACGAGGGGCCTCTCTTTGATGAGGTGGACCTCAGCG i colAng1.NW_012116043v1 C 0 C 0 s saiBol1.JH378194 499022 77 - 9212255 TGTGCTGCTCGCT---GCTTCGGTCGGAGGCGATGGGGGGGATGACGAGGGGCCTCTCTTTGATGAGGTGGACCTCGGCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2918020 77 + 4466143 TGTGCTGCTCGCT---GCTTCGGTCGGAGGCGATGGGGGGGATGACGAGGGGCCTCTCTTTGATGAGGTGGACCTCGGCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1620998 77 + 5364348 TGTGCTGCTCGCT---GCTTCGGTCGGAGGCGATGGGGGGGATGACGAGGGGCCTCTCTTTGATGAGGTGGACCTCGGCA i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9503530 71 - 31815103 TGTGCTGCTCGCC---GCTACGCTCGGAGGCGATGGGCGGGAT---GAGCGGCCGCTCCC---TGAGGTGCACCTCGGCG i micMur3.chr21 I 65 C 0 s proCoq1.NW_012154285v1 6756742 77 - 9870158 TGTGCTGCTCGCCGGTGCTGCGCTCAGAGGCGATGGGCGGGATGACGAGAGGCCGCTCTT---TGAGGTGGACCTCGGCC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4342932 74 + 7922563 TGTGCTGCTCACTGGTGCTGCGCTCGGAGGCAATGGGCGGTAT---GAGAGGCCGCTCTT---TGAGGTGGACCTCCGCG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124835682 77 + 151834684 TGTGCTGCCCAGTGGCGCTACGATCTGAGGCAATGGGAGGGATGACGAGAGGCCGCTCCT---TGAGCTGGACCTCAGCA i mm10.chr5 C 0 C 0 s canFam3.chr26 33191387 80 - 38964690 TGTGCCGCTCACTTGAGCTGCGGTCGGAGGCGATGGGGGGGATGACCAGAGGCCTCTCCTTGATGAGATGGGCCTCAGCT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 881335 80 - 1116856 TGTGCTGCTCGCTCGAGCCCCGGTCAGAAGCGATGGGAGGAATGACGAGAGGCCTCTCCTTGATGAGGTGGACCTCGGCC i dasNov3.JH568189 C 0 C 0 e calJac3.chr9 114856504 3491 + 124281992 M a score=7273271.000000 s hg38.chr12_KI270834v1_alt 110842 371 + 119498 GACTCCCTAGCCAGCAGAAATGGGGTGGGGTCGGGCATAGCATCCACTGGTTCCCGCAAAAGGAGTTTCCTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATT-CCGGGTGCAAGGGGGCTGAGAGGCTCTTTTTCATGCGGCGGCGAGGCGTTTCGGGTAGCTTGTCTTTGGGGGGCGCTGGCTTGTAGCTGG-CCAGCACGGGGCTCCCTGACGGGCTGGCATCTGAGGTCCCGCTGGAGCTCATGAGCTTCTTCTTGGCGGCGTGCAGCTGGGAGGTCAGGTAGGCGATGGTGCTGGCCCGCTGCTCCAGCTCGCTAGACAGCAGGGTCAGCTTGTGACTCTTGGCCTTCAGCTCCTCCAGGTACTT s panTro5.chr12 127396447 371 + 137163284 GACTCCCTAGCCAGCAGAAATGGGGTGGGGTCGGGCATAGCATCCACTGGTTCCCGCAAAAGGAGTTTCCTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATT-CCGGGTGCAAGGGGGCTGAGAGGCTCTTTTTCATGCGGCGGCGAGGCGTTTCAGGTAGCTTGTCTTTGGGGGGCGCTGGCTTGTAGCTGG-CCAGCACGGGGCTCCCTGACGGGCTGGCATCTGAGGTCCCGCTGGAGCTCATGAGCTTCTTCTTGGCGGCGTGCAGCTGGGAGGTCAGGTAGGCGATGGTGCTGGCCCGCTGCTCCAGCTCGCTAGACAGCAGGGTCAGCTTGTGACTCTTGGCCTTCAGCTCCTCCAGGTACTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125746738 371 + 135337776 GACTCCCTAGCCAGCAGAAATGGGGTGGGGTCGGGCATAGCATCCACTGGTTCCCGCAAAAGGAGTTTCCTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATT-CCGGGTGCAAGGGGGCTGAGAGGCTCTTTTTCATGCGGCGGCGAGGCGTTTCGGGTAGCTTGTCTTTGGGGGGCGCTGGCTTGTAGCTGG-CCAGCACGGGGCTCCCTGACGGGCTGGCATCTGAGGTCCCGCTGGAGCTCATGAGCTTCTTCTTGGCGGCGTGCAGCTGGGAGGTCAGGTAGGCGATGGTGCTGGCCCGCTGCTCCAGCTCGCTAGACAGCAGGGTCAGCTTGTGACTCTTGGCCTTCAGCTCCTCCAGGTACTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8260287 371 - 8369578 GACTCCCTAGCCAGCAGAAATGGGGTGGGGTCGGGCATAGCATCCACTGGTTCCCGCAAAAGGAGTTTCCTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATT-CCGGGTGCAAGGGGGCTGAGAGGCTCTTTTTCATGCGGCGGCGAGGCGTTTCGGGTAGCTTGTCTTTGGGGGGCGCTGGCTTGTAGCTGG-CCAGCACGGGGCTCCCTGACGGGCTGGCATCTGAGGTCCCGCTGGAGCTCATGAGCTTCTTCTTGGCGGCGTGCAGCTGGGAGGTCAGGTAGGCGATGGTGCTGGCCCGCTGCTCCAGCTCGCTAGACAGCAGGGTCAGCTTGTGACTCTTGGCCTTCAGCTCCTCCAGGTACTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97918336 371 + 106955855 GACTCCCTAGCCAGCAGAAATGGGGTGGGGTCTGGCATAGCATCCACTGGTTCCCGCAAAAGGAGTTTCCTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATT-CCGGGTGCAAGGGGGCCGAGAGGCTCTTTTTCATGCGGCGGCGAGGCGTTTCAGGTAGCTTGTCTTTGGGGGGCGCTGGCTTGTAGCTGG-CCAGCACGGGGCTCCCTGACGGGCTGGCATCTGAGGTCCCACTGGAGCTCATGAGCTTCTTCTTGGCGGCGTGCAGCTGGGAGGTCAGGTAGGCGATGGTGCTGGCCCGCTGCTCCAGCTCGCTAGACAGCAGGGTCAGCTTGTGACTCTTGGCCTTCAGCTCCTCCAGGTACTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124033467 371 + 133663169 GACTCCCTAGCCAGTAGAAATGGGGTAGGGTCGGGCATAGCATCCACTGGTTCCCGCAAAAGGAGTTTCCTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATT-CCGGGTGCAAGGGGGCTGAGAGGCTCTTTTTCATGCGGCGGCGAGGCGTTTCAGGTAGCTTGTCTTTGGGGGGCGCTGGCTTGTAGCTGG-CCAGCACGGGGCTCCCTGACGGGCTGGCATCTGAGGTCCCGCTGGAGCTCATGAGCTTCTTCTTGGCGGCGTGCAGCTGGGAGGTCAGGTAGGCGATGGTGCTGGCCCGCTGCTCCAGCTCGCTAGATAGCAGGGTCAGCTTGTGGCTCTTGGCCTTCAGCTCCTCCAGGTACTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128281658 371 + 137757926 GACTCCCTAGCCAGGAGAAATGGGGTAGGGTCGGGCATAGCATCCACTGGTTCCCGCAAAAGGAGTTTCCTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATT-CCGGGTGCAAGGGGGCTGAGAGGCTCTTTTTCATGCGGCGGCGAGGCGTTTCAGGTAGCTTGTCTTTGGGGGGCGCTGGCTTGTAGCTGG-CCAGCACCGGGCTCCCTGACGGGCTGGCATCTGAGGTCCCGCTGGAGCTCATGAGCTTCTTCTTGGCGGCGTGCAGCTGGGAGGTCAGGTAGGCGATGGTGCTGGCCCGCTGCTCCAGCTCGCTAGATAGCAGGGTCAGCTTGTGGCTCTTGGCCTTCAGCTCCTCCAGGTACTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10680150 371 - 16319837 GACTCCCTAGCCAGTAGAAATGGGGTAGGGTCGGGCATAGCATCCACTGGTTCCCGCAAAAGGAGTTTCCTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATT-CCGGGTGCAAGGGGGCTGAGAGGCTCTTTTTCATGCGGCGGCGAGGCGTTTCAGGTAGCTTGTCTTTGGGGGGCGCTGGCTTGTAGCTGG-CCAGCACGGGGCTCCCTGACGGGCTGGCATCTGAGGTCCCGCTGGAGCTCATGAGCTTCTTCTTGGCGGCGTGCAGCTGGGAGGTCAGGTAGGCGATGGTGCTGGCCCGCTGCTCCAGCTCGCTAGATAGCAGGGTCAGCTTGTGACTCTTGGCCTTCAGCTCCTCCAGGTACTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12304067 371 + 20526591 GACTCCCTAGCCAGTAGAAATGGGGTAGGGTCGGGCATAGCATCCACTGGTTCCCGCAAAAGGAGTTTCCTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATT-CCGGGTGCAAGGGGGCTGAGAGGCTCTTTTTCATGCGGCGGCGAGGCGTTTCAGGTAGCTTGTCTTTGGGGGGCGCTGGCTTGTAGCTGG-CCAGCACGGGGCTCCCTGACGGGCTGGCATCTGAGGTCCCGCTGGAGCTCATGAGCTTCTTCTTGGCGGCGTGCAGCTGGGAGGTCAGGTAGGCGATGGTGCTGGCCCGCTGCTCCAGCTCGCTAGATAGCAGGGTCAGCTTGTGACTCTTGGCCTTCAGCTCCTCCAGGTACTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119275553 371 + 128539186 GACTCCCTAGCCAGTAGAAATGGGGTAGGGTCGGGCATAGCATCCACTGGTTCCCGCAAAAGGAGTTTCCTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATT-CCGGGTGCAAGGGGGCTGAAAGGCTCTTTTTCATGCGGCGGCGAGGCGTTTCAGGTAGCTTGTCTTTGGGGGGCGCTGGCTTGTAGCTGG-CCAGCACGGGGCTCCCTGACGGGCTGGCATCTGAGGTCCCGCTGGAGCTCATGAGCTTCTTCTTGGCGGCGTGCAGCTGGGAGGTCAGGTAGGCGATGGTGCTGGCCCGCTGCTCCAGCTCGCTAGATAGCAGGGTCAGCTTGTGACTCTTGGCCTTCAGCTCCTCCAGGTACTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 627004 371 + 6255621 GACTCCCTAGCCAGTAGAAATGGGGTAGGGTCGGGCATAGCATCCACTGGTTCCCGCAAAAGGAGTTTCCTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATT-CCGGGTGCAAGGGGGCTGAGAGGCTCTTTTTCATGCGGCGGCGAGGCGTTTCAGGTAGCTTGTCTTTGGGGGGCGCTGGCTTGTAGCTGG-CCAGCACGGGGCTCCCTGACGGGCTGGCATCTGAGGTCCCGCTGGAGCTCATGAGCTTCTTCTTGGCGGCGTGCAGCTGGGAGGTCAGGTAGGCGATGGTGCTGGCCCGCTGCTCCAGCTCGCTAGACAGCAGGGTCAGCTTGTGACTCTTGGCCTTCAACTCCTCCAGGTACTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4653375 371 - 8658521 GACTCCCTAGCCAGTAGAAATGGGGTAGGGTCGGGCATAGCATCCACTGGTTCCCGCAAAAGAAGTTTCCTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATT-CCGGGTGCAAGGGGGCTGAGAGGCTCTTTTTCATGCGGCGGCGAGGCGTTTCAGGTAGCTTGTCTTTGGGGGGCGCTGGCTTGTAGCTGG-CCAGCACGGGGCTCCCTGACGGGCTGGCATCTGAGGTCCCGCTGGAGCTCATGAGCTTCTTCTTGGCAGCGTGCAGCTGGGAGGTCAGGTAGGCGATGGTGCTGGCCCGCTGCTCCAGCTCGCTAGATAGCAGGGTCAGCTTGTGACTCTTGGCCTTCAGCTCCTCCAGGTACTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114859995 369 + 124281992 GACTCCCTGGCCAGCAGAAATGGG--TGGGTCAGGCATAGCATCCACTGG-TCCCGCAAAAGGAGTTT-CTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATTCCCGGGTGCAAGGGGGCCGAGAGGCTCTTTTTCATGCGGCGGCGAGGTGTTTCAGGCAGCTTGTCTTTGGGGGGTGCTGGCTTGTAGCTGGCCCAGCACGGGGCTCCCCGACGGGCTGGCATCTGAGGTCCCACTGGAGCTCATGAGCTTCTTCTTGGCGGCGTGCAGCTGGGAGGTCAGGTAGGTGATGGTGCCGGCCCGCTGCTCCAGCTCACTGGACAGCAGGGTCAGCTTGTGGCTCTTGGCCTTCAGCTCCTCCAGGTACTT i calJac3.chr9 M 3491 C 0 s saiBol1.JH378194 499099 371 - 9212255 GACTCCCTGGCCAGCAGAAATGGGGTGGGGTCGGGCATAGCATCCACTGGTTCCCGCAAAAGGAGTTTCCTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATT-CTGGGTGCAAGGGGGCCGAGAGGCTCTTTTTCATGCGGCGGCGAGGCGTTTCAGGCAGCTTGTCTTTGGGGGGTGCTGGCTTGTAGCTGG-CCAGCACGGGGCTCCCTGACGGGCTGGCATCTGAAGTCCCGCTGGAGCTCATGAGCTTCTTCTTGGCGGCGTGCAGCTGGGAGGTCAGGTAGGCGATGGTGCCGGCTCGCTGCTCCAGCTCGCTGGACAGCAGGGTCAGCTTGTGACTCTTGGCCTTCAGCTCCTCCAGGTACTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2918097 371 + 4466143 GACTCCCTGGCCAGCAGAAATGGGGTGGGGTCAGGCATAGCATCCACTGGTTCCCGCAAAAGGAGTTTCCTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATT-CTGGGTGCAAGGGGGCCGAGAGGCTCTTTTTCATGCGGCGGCGAGGTGTTTCGGGCAGCTTGTCTTTGGGGGGCGCTGGCTTGTAGCTGG-CCAGTACGGGGCTCCCTGACGGGCTGGCATCTGAGGTCCCGCTGGAGCTCATGAGCTTCTTCTTGGCGGCATGCAGCTGGGAGGTCAGGTAGGCGATGGTGCCAGCACGCTGCTCCAGCTCGCTGGACAGCAGGGTCAGCTTGTGGCTCTTGGCCTTCAGCTCCTCCAGGTACTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1621075 371 + 5364348 GACTCCCTGGCCAGCAGAAATGGGGTGGGGTCGGGCATAGCATCCACCGGTTCCCGCAAAAGGAGTTTCCTGCTCTCTGCCCCGAATCTGTAGACCTCTTCAAATT-CTGGGTGCAAGGGGGCCGAGAGGCTCTTTTTCATGCGGCGGCGAGGCGTTTCGGGCAGCTTGTCTTTGGGGGGCGCTGGCTTGTAGCTGG-CCAGCACGGGGCTCCCCGACGGGCTGGCATCTGAGGTCCCGCTGGAGCTCATGAGCTTCTTCTTGGCGGCGTGCAGCTGGGAGGTCAGGTAGGCGATGGTGCCGGCCCGCTGCTCCAGCTCGCTGGACAGCAGGGTCAGCTTGTGGCTCTTGGCCTTCAGCTCCTCCAGGTACTT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9503601 371 - 31815103 GACTCCCGGGCCAGCAGGAACGGCGTGGGGTCGGGCATGGCGTCCACCGGTTCCCGCAGGAGCAGCTTCCGGCTCTCGGCCCCGAGTCTGTAGACCTCCTCGAACT-CCGGGTGCAGGGGCGCCGACAGGCTCTTCTTCATGCGGCGGCGCGGCGTCTCGGGCAGCCTGTCCTTGGGGGGCGCCGGCTTGTAGCTGG-CCAGCACGGGGCTCCCCGACGGGCTGGCGTCCGAGGTCCCGCTGGAGCTCGCCAGCTTCTTCTTGGCGGCGTGCAGCTGCGCCGTCAGGTAGGCGACGGTGCCCGCGCGCTGCTCCAGCTCGCCCGACAGCAGGCTCAGCGCGTGGCTCTTGGCCTTCAGCTCCTCCAGGTACTT i micMur3.chr21 C 0 I 369 s proCoq1.NW_012154285v1 6756819 371 - 9870158 GACTCCCTGGCCAGCAGGAACGGGGTGGGGTCGGGCATGGCGTCCACCGGTTCCCGCAGGAGTAGCTTCCGGCTCTCGGCCCCGAATCGGTAGACCTCTTCGAATT-CCGGGTGCAGGGGCGCCGACAGGCTCTTCTTCATGCGGCGGCGCGGCGTCTCGGGCAGCTTGTCTCTGGGGGGTGCCGGCTTGTAGCTGG-CCAGCACGGGGCTCCCCGATGGGCTGGCGTCCGAGGTCCCGCTGGAGCTCATGAGCTTCTTCTTGGTGGCGTGCAGCTGCGCCGTCAGGTAGGCGATGGTGCCCGCGCGCTGCTCCAGCTCGCCCGACAGCAGGCTCAGCTTGTGGCTCTTGACCTTCAGCTCCTCCAGGTACTT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4343006 371 + 7922563 GACTCCCGGGCCAGCAGGAATGGGGTGGGGTCAGGCATGGCATCTACCGGTTCCCGCAAAAGTAGTTTCCGGCTCTCAGCCCCAAATCTGTAGACCTCTTCGAATT-CCGGGTGCAGGGGAGCCGAGAGACTCTTCTTCATGCGGCGGCGAGGCGTTTCGGGCAGCTTGTCTTTGGGAGGTGCCGGCTTATAGCTGG-CCAACACGGGACTCCCTGACGGGCTGGCGTCTGAGGTCCCACTGGAGCTCAGGAGCTTCTTCTTGGTGGCATGCAGCTGGGAGGTCAGGTAGGCGATGGTGCCCGCCCGCTGCTCCAGCTCACTGGACAGCAGGTTCAGCTTGTGGCTCTTCACCTTCAGCTCCTCCAGGTACTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124835759 371 + 151834684 GACTCCCGGGCCAGCAGGAATGGGGTGGGGTCGGGCATGGCATCCACAGGCTCCCGAAGGAGGAGTTTGCGGCTCTCGGCTCCAAACCTGTAGACCTCCTCAAACT-CGGGGTGCAGTGGGGCGGACAGGCTCTTCTTCATGCGGCGGCGGGGTGTCTCAGGCAGCTTGTCCTTGGGGGGTGTGGGTTTGTAGCTGG-CCAGCGCGGGACTGCCGGCAGGGCTGGCATCCGAGGTGCCACTTGAGCTCAGCAACTTCTTCTTGGCTGCATGCAGCTGCGAGGTGAGGTAGGCCACAGTGCTGGCGCGTTGCTCCAACTCACCTGACAGCATGCTCAGTTTGTGGCTCTTCACCTTCAGCTCCTCCAGGTACTT i mm10.chr5 C 0 C 0 s canFam3.chr26 33191467 371 - 38964690 GACTCCCTGGCCAGCAGGAATGGGGTGGGGTCAGGCATGGCATCCACTGGCTCCCGCAACAGTAGTTTCCGGCTCTCGGCCCCAAATCTGTAGACCTCTTCAAATT-CCGGGTGCAGGGGGGCTGAGAGGCTCTTTTTCATGCGGCGGCGGGGCGTTTCAGGCAGCTTGTCCTTGGGGGGGGCTGGCTTGTAGCCAG-CCGGCACAGGGCTCCCCGATGGGCTGCCATCCGAGGTCCCACTGGCGCTCATGAGCTTTCGCTTGGCGGCGTGCAGTTGGGCAGTCAGGTAAGCGATGGTGCTGGCGCGCTGCTCCAGCTCACCGGACAGCATGTTCAGCTTGTGGCTCTTCACCTTGAGCTCCTCCAGGTACTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 881415 371 - 1116856 GACTCCCGGGCCAGCAGAAACGGAGTGGGGTCAGGCATGGCATCCACTGGTTCACGCAAAAGTAGTTTCCGGCTCTCAGCCCCAAATCTGTAGACCTCTTCGAATT-CTGGGTGCAGAGGAGCCGAGAGGCTCTTTTTCATCCGGCGGCGAGGTGTCTCGGGCAGCTTGTCTTTGGGGGGCGCTGGCTTGTAGCTGG-CCAGCACGGGGCTCCCGGACGGGCTGGCATCGGAAGTCCCGCTGGAGCTCAGGAGCTTCTTCTTGGCGGCGTGCAGCTGGGAGGTCAGGTAGGCGATGGTGCCCGCGCGCTGCTCCAGCTCGCTCGACAGCATGTTCAGCTTATGGCTTTTCACTTTCAGTTCTTCCAAGTACTT i dasNov3.JH568189 C 0 C 0 a score=1020917.000000 s hg38.chr12_KI270834v1_alt 111213 60 + 119498 CTTCTCTCGCTCCTTGATGGTGTTCTCCAGCACTGTGATCATCGCGTTTTTCTGCTCCAG s panTro5.chr12 127396818 60 + 137163284 CTTCTCCCGCTCCTTGATGGTGTTCTCCAGCACTGTGATCATTGCATTTTTCTGCTCCAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747109 60 + 135337776 CTTCTCCCGCTCCTTGATGGTGTTCTCCAGCACTGTGATCATCGCGTTTTTCTGCTCCAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8260658 60 - 8369578 CTTCTCCCGCTCCTTGATGGTGTTCTCCAGCACTGTGATCATCGCGTTTTTCTGCTCCAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97918707 60 + 106955855 CTTCTCCCGCTCCTTGATGGTGTTCTCCAGCACTGTGATCATCGCGTTTTTCTGCTCCAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124033838 60 + 133663169 CTTCTCCCGCTCCTTGATGGTGTTCTCCAGCACTGTGATCATCGCGTTTTTTTGCTCCAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128282029 60 + 137757926 CTTCTCCCGCTCCTTGATGGTGTTCTCCAGCACTGTGATCATCGCGTTTTTTTGCTCCAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10680521 60 - 16319837 CTTCTCCCGCTCCTTGATGGTGTTCTCCAGCACTGTGATCATCGCGTTTTTTTGCTCCAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12304438 60 + 20526591 CTTCTCCCGCTCCTTGATGGTGTTCTCCAGCACTGTGATCATCGCGTTTTTTTGCTCCAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119275924 60 + 128539186 CTTCTCCCGCTCCTTGATGGTGTTCTCCAGCACTGTGATCATCGCGTTTTTCTGCTCCAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 627375 60 + 6255621 CTTCTCCCGCTCCTTGATGGTGTTCTCCAGCACTGTGATCATCGCGTTTTTTTGCTCCAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4653746 60 - 8658521 CTTCTCCCGCTCCTTGATGGTGTTCTCCAGCACTGTGATCATCGCGTTTTTCTGCTCCAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114860364 60 + 124281992 CTTCTCCCGCTCCTTGATGGTGTTCTCCAGCACCGTGATCATCGCGTTTTTCTGCTCCAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 499470 60 - 9212255 CCTCTCCCGCTCCTTGATGGTGTTCTCCAGCACCGTGATCATCGCGTTTTTCTGCTCCAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2918468 60 + 4466143 CTTCTCCCGCTCCTTGATGGTGTTCTCCAGAACCGTGATCATCGCGTTTTTCTGCTCCAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1621446 60 + 5364348 CTTCTCCCGCTCCTTGATGGTGTTCTCCAGCACCGTGATCATCGCGTTTTTCTGCTCCAA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6757190 60 - 9870158 GCGCTCCCGCTCGCGCAGGGTGTTCTCCAGCACCGCGATCATCGCGTTCTTCTGCTCCAG i proCoq1.NW_012154285v1 C 0 I 308 s otoGar3.GL873618 4343377 60 + 7922563 GCGTTCACGCTCACGGATGGTGTTCTCCAGTACTGTGATCATGGCGTCCTTCTGCTCCAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124836130 60 + 151834684 CTTCTCTCTCTCACGGACTGTGTTCTCCAGCACAGCGATGGCGGCGTTCTTCTGTTCCAG i mm10.chr5 C 0 C 0 s canFam3.chr26 33191838 60 - 38964690 CTTCTCCCGCTCCTTGACGGTGTTCTCCAGCACCACGATCATGGCGTTCTTCTGCTCCAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 881786 60 - 1116856 CTTCTCCCTCTCTTTGATGGTGTTCTCCAGAACCATGATCATTGCATTTTTCTGCTCCAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9503972 369 - 31815103 I a score=1965401.000000 s hg38.chr12_KI270834v1_alt 111273 133 + 119498 TTCTTTCAACAACTCAGCATTTTCGTTCTCTTTCACTTTCAGTTGGGCTTCCAGCTCTTCACATCTTTTCTTTAATTCACTGCTTTTAGAAGTCCCGTCTCCTACAAGAATAAGCCGAGGAAGCAGG-TGAAGA s panTro5.chr12 127396878 133 + 137163284 TTCTTTCAACAACTCAGCATTTTCGTTCTCTTTCACTTTCAGTTGGGCTTCCAGCTCTTCACATCTTTTCTTTAATTCACTGCTTCTAGAAGTCCCGTCTCCTACAAGAATAAGCCGAGGAAGCAGG-TGAAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747169 133 + 135337776 TTCTTTCAACAACTCAGCATTTTCGTTCTCTTTCACTTTCAGTTGGGCTTCCAGCTCTTCACATCTTTTCTTTAATTCACTGCTTCTAGAAGTCCCGTCTCCTACAAGAATAAGCCGAGGAAGCAGG-TGATGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8260718 133 - 8369578 TTCTTTCAACAACTCAGCATTTTCGTTCTCTTTCACTTTCAGTTGGGCTTCCAGCTCTTCACATCTTTTCTTTAATTCACTGCTTCTAGAAGTCCCGTCTCCTACAAGAATAAGCCGAGGAAGCAGG-TGAAGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97918767 133 + 106955855 TTCTTTCAACAACTCAGCATTTTCGTTCTCTTTCACTTTCAGTTGGGCTTCCAGCTCTTCACATCTTTTCTTTAATTCACTGCTTCTAGAAGTCCCGTCTCCTACAAGAATAAGCCGAGGAAGCAGG-TGAAGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124033898 133 + 133663169 TTCTTTCAACAACTCAGCATTTTCGTTCTCTTTCACTTTCAGTTGGGCTTCCAGCTCTTCACATCTTTTCTTTAATTCGCTGCTTCTAGAAGTCCCATCTCCTACAAGAATAAGCCGAGGAAGGAGG-TGAAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128282089 133 + 137757926 TTCTTTCAACAACTCAGCATTTTCGTTCTCTTTCACTTTCAGTTGGGCTTCCAGCTCTTCACATCTTTTCTTTAATTCGCTGCTTCTAGAAGTCCCATCTCCTACAAGAATAAGCCGAGGAAGGAGG-TGAAGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10680581 133 - 16319837 TTCTTTCAACAACTCAGCATTTTCGTTCTCTTTCACTTTCAGTTGGGCTTCCAGCTCTTCACATCTTTTCTTTAATTCGCTGCTTCTAGAAGTCCCATCTCCTACAAGAATAAGCCGAGGAAGGAGG-TGAAGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12304498 133 + 20526591 TTCTTTCAACAACTCAGCATTTTCGTTCTCTTTCACTTTCAGTTGGGCTTCCAGCTCTTCACATCTTTTCTTTAATTCGCTGCTTCTAGAAGTCCCATCTCCTACAAGAATAAGCCGAGGGAGGAGG-TGAAGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119275984 133 + 128539186 TTCTTTCAACAACTCAGCATTTTCGTTCTCTTTCACTTTCAGTTGGGCTTCCAGCTCTTCACATCTTTTCTTTAATTCGCTGCTTCTAGAAGTCCCATCTCCTACAAGAATAAGCCGAGGAAGGAGG-TGAAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 627435 133 + 6255621 TTCTTTCAACAACTCAGCATTTTCGTTCTCTTTCACTTTCAGTTGGGCTTCCAGCTCTTCACATCTTTTCTTTAATTCGCTGCTTCTAGAAGTCCCATCTCCTACAAGAATAAGCCGAGGAAGGAGG-TGAAGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4653806 134 - 8658521 TTCTTTCAACAACTCAGCATTTTCGTTCTCTTTCACTTTCAGTTGGGCTTCCAGCTCTTCACATCTTTTCTTTAATTCGCTGCTTCTAGAAGTCCCATCTCCTACAAGAATAAGCCGAGGAAGGAGGTTGAAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114860424 133 + 124281992 TTCTTTCAACAACTCAGCATTTTCCTTCTCTTTCACTTTCAGCTGGACTTCCAGTTCTTCACATCTTTTCTTTAATTCGCTGCTTCTAGAAGTCCCATCTCCTACAAGAATAAGCCAAGGAAGCAGG-TGAAGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 499530 133 - 9212255 TTCTTTCAACAACTCGGCATTTTCCTTCTCTTTCACTTTCAGCTGGACTTCCAGTTCTTCATATCTTTTCTTTAATTCGCTGCTTCTAGAAGTCCCGTCTCCTACAAGAATAAGCCAAGGAAGCAGG-TGAAGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2918528 133 + 4466143 TTCTTTCAACAACTCAGCATTTTCCTTCTCTTTCATTTTCAGCTGGACTTCCAGTTCTTCACATCTTTTCTTTAATTCGCTGCTTCTAGAAGTCCCGTCTCCTACAAGAATAAGCCAAGGAAGCAGG-TGAAGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1621506 133 + 5364348 TTCTTTCAACAACTCAGCATTTTCCTTCTCTTTCACTTTCAGCTGGACTTCCAGTTCTTCACATCTTTTCTTTAATTCGCTGCTTCTAGAAGTCCCGTCTCCTACAAGAATAAGCCAAGGAAGCAGG-TGAAGA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4343437 133 + 7922563 TTCCTTTAACAGCTCCGCGTTCTCGTCCCCTTTGACTTTCAGCTGAGCTTCCAGTTCCTCACACCTTTTCTTCAGTTCACTGCTTCTAGAAGACCCATCGCCTACAAGAAGAAGTCGAGGCAGCAGG-TGAAGA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124836190 132 + 151834684 TTCCTGCAGCAGCTTGCGGTTTTCCTCCTCTTTGGCCTTCAGCTGGGCTTCCAGCTCCTCACAGCGCCTCTTCAGCTCCGTCGTTCTGGAAGAGCTGTCTCCTGCAGGAACAAGTC-AGGCGCCCGG-TCAGAG i mm10.chr5 C 0 C 0 s canFam3.chr26 33191898 133 - 38964690 CTCTTTGAGCAGTTCGTTGTTCTCTTCCTCCTGCAACTTCAGTTGGGCTTCCAGTTCTTCACATCTTCTCTTTAGTTCACTGCTTCTGGAAGACCCATCTCCTAGAAAAGCAAGCCAAAGGATGGGT-TTAAGA i canFam3.chr26 C 0 I 34 s dasNov3.JH568189 881846 133 - 1116856 TTCTTTTAACAATTCATTATTTTCATTTTCTTTGACTTTCAGCTGAGCTTCCAGTTCTTCACATCTTTTCTTTAGTTCGCTGCTTCTAGAAGTTCCATCTCCTAGAAGAATAAGCCGAGGAACCAAA-TTAAGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9503972 369 - 31815103 I e proCoq1.NW_012154285v1 6757250 308 - 9870158 I a score=334065.000000 s hg38.chr12_KI270834v1_alt 111406 34 + 119498 ACTCATTAGACTGAGGCCGAGTGGT-GAGGC--CTAT s panTro5.chr12 127397011 34 + 137163284 ACTCATTAGACTGAGGCCGAGTGGT-GAGGC--CTAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747302 34 + 135337776 ACTCATTAGACTGAGGCCGAGTGGT-GAGGC--CTAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8260851 34 - 8369578 ACTCATTAGACTGAGGCCGAGTGGT-GAGGC--CTAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97918900 34 + 106955855 ACTCATTAAACTGAGTCCGAGTGGT-GAGGC--CTAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034031 34 + 133663169 ACTCATTAGACTGAGGCTGAGTGGT-GAGGC--CTAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128282222 34 + 137757926 ACTCATTAGACTGAGGCTGAGTGGT-GAGGC--CTAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10680714 34 - 16319837 ACTCATTAGACTGAGGCTGAGTGGT-GAGGC--CTAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12304631 34 + 20526591 ACTCATTAGACTGAGGCTGAGTGGT-GAGGC--CTAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119276117 34 + 128539186 ACTCATTAGACCGAGGCTGAGTGGT-GAGGC--CTAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 627568 34 + 6255621 ACTCATTAGACTGAGGCTGAGTGGT-GAGGC--CTAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4653940 34 - 8658521 ACTCATTAGACTGAGGCTGAGTGGT-GAGGC--CTAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114860557 36 + 124281992 ACTCATCAGACTGAGGCTGAGTGTT-GAGGCCTCTAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 499663 36 - 9212255 ACTCATCAGACTGAGGCTGAGTGGT-GAGGCCTCTAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2918661 36 + 4466143 ACTCATCAGGCTGAGGCTGAGTGGT-GAGGCCTCTAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1621639 36 + 5364348 ACTTATCAGACTGAGGCCGAGTGGC-GAGGCCTCTAC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4343570 33 + 7922563 ACCCACTAGACGGAGGCAGCGCCAT-GACGC--CTG- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124836322 25 + 151834684 TCT-----AGCTGAGG----GAGGA-GATGC--TCAT i mm10.chr5 C 0 C 0 s dasNov3.JH568189 881979 30 - 1116856 ACCTATC-----GAGACTGAACCATCAACAC--CTGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9503972 369 - 31815103 I e proCoq1.NW_012154285v1 6757250 308 - 9870158 I e canFam3.chr26 33192031 34 - 38964690 I a score=1826479.000000 s hg38.chr12_KI270834v1_alt 111440 205 + 119498 GGGGCAGGCGGACCTGTCTGGT-GGGGGCCCTGTCTAGGCT-GTGGGGGCCAT-------GCAGAAGGC--------AGGGCTG-TGGGGGCTCTGGAAA----GACCC-------------CTCCCCTCCCCGAGGTGGGGAGATCGGGGCA-TCTCAGAGGCCCTTTCCGGCTCTTAG-TTCTCT-----GGCCTACTGCATAAAAG--AATGTCTCTGAACCTTAAAGATGCTGAACTTAAAACAG s panTro5.chr12 127397045 206 + 137163284 GGGGCAGGCGGACCTGTCTGGCGGGGGGCCCTGTCTAGGCT-GTGGGGGCCAT-------GCAGAAGGC--------AGGGCTG-TGGGGGCTCTGGAAA----GACCC-------------CTCCCCTCCCCGAGGTGGGGAGATCAGGGCA-TCTCAGAGGCCCTTTCCGGCTCTTAG-TTCTCT-----GGCTTACTGCATAAAAG--AATGTCTCTGAACCTTAAAGATGCTGAAGTTAAAACAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747336 206 + 135337776 GGGGCAGGCGGACCTGTCTGGCGGGGGGCCCTGTCTAGGCT-GTGGGGGCCAT-------GCAGAAGGC--------AGGGCTG-TGGGGGCTCTGGAAA----GACCC-------------CTCCCCTCCCCGAGGTGGGGAGATCAGGGCA-TCTCAGAGGCCCTTTCCGGCTCTTAG-TCCTCT-----GGCTTACTGCATAAAAG--AATGTCTCTGAACCTTAAAGATGCTGAAGTTAAAACAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8260885 206 - 8369578 GGGGCAGGCGGACCTGTCTGGTGGGGGGCCCTGTCTAGGCT-GTGGGGGCCAT-------GCAGAAGGC--------AGGGCTG-TGGGGGCTCTGGAAA----GACCC-------------CTCCCCTCCCCGAGGTGGGGAGATCAGGGCA-TCTCAGAGGCCCTTTCCGGCTCTTAG-TTCTCT-----GGCTTACTGCATAAAAG--AATGTCTCTGAACCTTAAAGATGCTGAAGTTAAAACAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97918934 206 + 106955855 GGGGCAGGCGGACCTGTCTGATAGGGGACCCTGTCTAGGCG-GTGGGGGCCAT-------GCAGAAGGC--------AGGGCTG-TGGGGGCTCTGGAAA----GACCC-------------CTCCCCTCCTCGAGGTGGGGAGATCAGGGCA-TCTCAGAGGTCCTTTCCGGCTCTTAG-TTCTCT-----GGCTTACTGCATAAAAG--AATGTCTCTGAACCTTAAAGATGCTGAAGTTAAAACAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034065 180 + 133663169 AGGGCAGGCGGACCTGTCTGGTGGGGGGCCCTGTCTA------------------------------------------GGCTG-TGGGGGCTCTGGAAA----GACCC-------------CTCCCCTCCCCGAGGTGGGGAGATCAGGGCA-TCTCAGAGGCCCTTTCCAGCTCTTAG-TTCTCT-----AGCTTACTGCATAAAAG--AATGTCTCTGAACCTTAAAGATGCTGAAGTTAAAAGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128282256 180 + 137757926 AGGGCAGGCGGACCTGTCTGGTGGGGGGCCCTGTCTA------------------------------------------GGCTG-TGGGGGCTCTGGAAA----GACCC-------------CTCCCCTCCCCGAGGTGGGGAGATCAGGGCA-TCTCAGAGGCCCTTTCCAGCTCTTAG-TTCTCT-----AGCTTACTGCATAAAAG--AATGTCTCTGAACCTTAAAGATGCTGAAGTTAAAAGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10680748 180 - 16319837 AGGGCAGGCGGACCTGTCTGGTGGGGGGCCCTGTCTA------------------------------------------GGCTG-TGGGGGCTCTGGAAA----GACCC-------------CTCCCCTCCCCGAGGTGGGGAGATCAGGGCA-TCTCAGAGGCCCTTTCCAGCTCTTAG-TTCTCT-----GGCTTACTGCATAAAAG--AATGTCTCTGAACCTTAAAGATGCTGAAGTTAAAAGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12304665 180 + 20526591 GGGGCAGGCGGACCTGTCTGGCGGGGGGCCCTGTCTA------------------------------------------GGCTG-TGGGGGCTCCGGAAA----GACCC-------------CTCCCCTCCCCGAGGTGGGGAGATGAGGGCA-TCTCAGAGGCCCTTTCCAGCTCTTAG-TTCTCT-----GGCTTACTGCAGAAAAG--AATGTCTCTGAACCTTCAAGATGCTGAAGTTAAAAGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119276151 180 + 128539186 GGGGCAGGCGGACCTGTCTGGTGGGGGGCCCTGTCTA------------------------------------------GGCTA-TGGGGGCTCTGGAAA----GACCC-------------CTCCCCTCCCCGAGGTGGGGAGATCAGGGCA-TCTCAGAGGCCCTTTCCAGCTCTTCG-TTCTCT-----GGCTTACTGCATAAAAG--AATGTCTCTGAACCTTAAAGATGCTGAAGTTAAAAGAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 627602 180 + 6255621 GGGGCAGGCGGACCTGTCTGGTGGGGGGCCCTGTCTA------------------------------------------GGCTG-TGGGGGCTCTGGAAA----GACCC-------------CTCCCCTCCCCGAGGTGGGGAGATGAGGGCA-TCTCAGAGGCCCTTTCCAGCTCTTAG-TTCTCT-----GGCTTACTGCAGAAAAG--AATGTCTCTGAACCTTAAAGATGCTGAAGTTAAAAGAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4653974 205 - 8658521 GGGGCAGGCGGACCTGTCTGGTGGGCGGCCCTGTCTAGGCT-GTGGGGGCCAT-------GCAGAAGGC--------AGGGCTG-TGGGGGCTCTGGAAA----GGCCC-------------CTCCCCT-CCCGAGGTGGGGAGATCAGGGCA-TCTCAGAGGCCCTTTCCGGCTCTTAG-TTTTCT-----GGCTTACTGCATAAAAG--AATGTCTCTGAACCTTAAAGATCTTGAAGTTAAAAGAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114860593 181 + 124281992 GGCGCAGGTGGACCTTTCTGGTAGAGGGCCCTGTTTAGGCT-GTG------------------------------------------GGGGCTCTGGAAA----GGCCC-------------CTCCCATCCCCAAGGCAGAGAGAGCAGGGCA-TCTCTGAAGCCCTTTCTAGCTCTTAGTTTCTCT-----GGCTTACTACATAAAAG--AACGTCTCCAAACCTTAAAGATGCTGAAGTTAAAACAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 499699 205 - 9212255 GGGGCAGGTGGACCTTTCTGGCAGAGGGCCCTGTTTAGGCT-GTGGGGGGCAT-------GCAGAAGGC--------AGGCCTG--AGGGGGTCTGGAAA----GGCCC-------------CTCCCATCCCCAAggcagagagagcagggca-tctctgaggccctttccagctcttag-ttctct-----ggcttACTACATAAAAG--AATGTCTCCAAACCTTAAAGAGGCTGAAGTTAAAACAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2918697 205 + 4466143 GGGGCAGGTGGACCTTTCTGGTAGAGAGCCCTGTGTAGGTT-GTGGGGGCCAT-------GCAGAAGGC--------AGGGTTG-TGCGGGTTCTGGAAA----GGCCC-------------CTCCCA-CCCCAAggcagagagagcagggca-tctctgaggccctttccagctcttag-ttctct-----ggcttACTACATAAAAG--AATGTCTCCAAACCTTAAAGATGCTGAAGTTAAAACAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1621675 206 + 5364348 GGGGCAGGTGGACCTTTCTGGTAGAGGGCCCTGGTTAGGCTGGTGGGGGCCAT-------GCAGAAGGC--------AGGGCTA-TGGGGGCTCTGGAAA----GGCCC-------------CTCCCATCCCCAAGGCAGAGAGAGCAGGGCA-TCTCTGAGGCCCTTTC---CCCTTAG-TTCTCT-----GGCTTACTACATAAAAGATAATGTCTCCAAACCTTAAAGATGCTGAAGTTAAAACAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4343603 142 + 7922563 GGGGCAGGCG--------TGGGCAAGGGCTGTGTCACAGCC--------------------------------------------------ACCTCGAGA----GGC------------------------------TGGGCAGGGGAAGGCC-------AGGCCCTTTCCAGCTCTCAC-TTCACT-----AGCTCATTGCATAAAAG--AATGTGTCCCAATTTTAAACTTGCTGAAGTTCAAACAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124836347 178 + 151834684 GG----------CCTGT---GTGGAGGGCCCTGCCAA--------GAAGCCCT-------ACAGTAGGC--------AGGGTGC-AGGATGGCCTG--CA----GGCCC-------------TGCTCCCACTAAAGGC----AGATCAGGGGG-TCTCTGAGGCCCCTCCCAGCTCTTGG-TTCCCT-----GGCTTACTGTGTAAAAG--A--TTCTCCAGAATCTGAAGGTGCTGAGGTTAAAACAG i mm10.chr5 C 0 I 543 s canFam3.chr26 33192065 218 - 38964690 GAGGCAGGGAGTCCT--------------CCTGTCTAGGCT-----GGTCCCTCTCCCCAGCACGAGGATGGGTGAGAGGGCTGCCAGGGGCCACGGGCATCTTGCCCCTGCCTCCATCACTCTCCCTTCACCAAGGTGGGGA-CCCAGTGC--CCTCTGAGTTCC-TTCCAGCTCTCGG-TGCCCT-----GGCTCATTGCACAGAAG--AATGCCTCCACACTTCAGAACTGCTCAAGTCACAACAG i canFam3.chr26 I 34 C 0 s dasNov3.JH568189 882009 117 - 1116856 ---------------------------------------------------------------------------------------GGGGC---AGAAA----GAcct-------------gtccag----aggggcaggggagacagggtggtttttgaggcccattccagctctcag-ttcttttgttATGCTTAATGTCTAAAAG--AATGTCTC-AATTTTTAAAAA----------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9503972 369 - 31815103 I e proCoq1.NW_012154285v1 6757250 308 - 9870158 I a score=193603.000000 s hg38.chr12_KI270834v1_alt 111645 16 + 119498 GCAATTGCAG--AGTATC s panTro5.chr12 127397251 16 + 137163284 GCAATTGCAG--AGTATC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747542 16 + 135337776 GCAATTGCAG--AGTATC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8261091 16 - 8369578 GCAATTGCAG--AGTATT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97919140 16 + 106955855 GCAATTGCAG--AGTACT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034245 16 + 133663169 GCAATTGCAG--AGTATC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128282436 16 + 137757926 GCAATTGCAG--AGTATC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10680928 16 - 16319837 GCAATTGCAG--AGTATC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12304845 16 + 20526591 GCAATTGCAG--AGTATC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119276331 16 + 128539186 GCAATTGCAG--AGTATC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 627782 16 + 6255621 GCAATTGCAG--AGTATC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4654179 16 - 8658521 GCAACTGCAG--AGTATT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114860774 16 + 124281992 GCAACTGCAG--AGTATT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 499904 16 - 9212255 GCAACTGTAG--AGTATT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2918902 16 + 4466143 GCAACTGCAG--AGTATT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1621881 16 + 5364348 GCAACTGCAG--AGTATT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4343745 18 + 7922563 GCAATTTTAGGTAGTGGT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33192283 16 - 38964690 GCAGTCTCAG--GGTATT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 882126 16 - 1116856 GAAATTTTGG--AGTATT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9503972 369 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I e proCoq1.NW_012154285v1 6757250 308 - 9870158 I a score=793553.000000 s hg38.chr12_KI270834v1_alt 111661 70 + 119498 AGACCTCAGCAAACACTTAGGATTCAACTGGCCGCAAATCCC-TCTGTCTGCTCAGATGGCATTTATGGAA s panTro5.chr12 127397267 70 + 137163284 AGACCTCAGCAAACACTTAGGATGAAACTGGCCGCAAATCCC-TCTGTCTGCTCAGATGGCATTTATGAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747558 70 + 135337776 AGACCTCAGCAAACACTTAGGATGAAACTGGCCGCAAATCCC-TCTGTCTGCTCAGATGGCATTTATGAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8261107 70 - 8369578 AGACCTCAGCAAACACTTAAGATTAAACTGGCCGCAAATCCC-TCTGTCTGCTCAGATGGCATTTATGAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97919156 70 + 106955855 AGACCTCAGCAAACACTTAGGATTAAACTGGCCACAAATCCC-TCTGTCTGCTCAGATGGCATTTATGAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034261 70 + 133663169 GGACCTCAGCAAACACTTAGGATTAAACTGGCCGCAAATCCT-TCTGTCTGCTCAGATGGCATTTATGAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128282452 70 + 137757926 GGACCTCAGCAAACACTTAGGATTAAACTGGCCGCAAATCCT-TCTGTCTGCTCAGATGGCatttatgaaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10680944 70 - 16319837 GGACCTCAGCAAACACTTAGGATTAAACTGGCCGCAAATCCT-TCTGTCTGCTCAGATGGCatttatgaaa i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12304861 70 + 20526591 AGACCTCAGCAAACACTTAGGATTAAACTGGCCGCAAATCCT-TCTGTCTGCTCAGATGGCatttatgaaa i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119276347 70 + 128539186 AGACCTCAGCAAACACTTAGGATTAAACTGGCCGCAAATCCT-TCTGTCTGCTCAGATGGCATTTATGAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 627798 70 + 6255621 AGACCTCAGCAAACACTTAGGATTAAACTGGCCACAAGTCCT-TCTGTCTGCTCAGATGGCatttatgaaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4654195 70 - 8658521 AGACCTCAGCAAACACTTAGGATTAAACTGGCCGCAAATCCT-TCTGTCTGTTCAGATGGAATTTATGAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114860790 67 + 124281992 AGACCTCACCAAAC----AGGATTGAACTGGCAGCAAATCCCTTCTGTCTGCTCAGATGGCATTCATGAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 499920 70 - 9212255 AGACCTCACCAAACACTTAGGGTTAAACTGGCAGCAAATCCC-TCTGTCTGCTCAGATGGCATTTATGAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2918918 70 + 4466143 AGACCTCACCAAACACTTAGGGTTAAACTGGCAGCAAATCCC-TCTGTCTGCTCAGATGGTGTTTATGAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1621897 69 + 5364348 AGACCTCACCATACACTTAGGGTTAAACTGGCA-CAAATCCC-TCTCTCTGCTCAGATGGCGTTTATGAAA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6757558 70 - 9870158 AGACCTCACCAAATACTTAGGATTGAACTGGCACCGAATCCC-TGTGTCTGCTCAGGTGGTGTTTACTAAA i proCoq1.NW_012154285v1 I 308 C 0 s otoGar3.GL873618 4343763 3 + 7922563 --------------------------------------------------------------------AAA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33192299 45 - 38964690 -----------------------GGAACAGTGAGCAGATCCC---TGTCTGCTTGGGCAGCATTTACTAAG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 882142 70 - 1116856 AGACCTCACCACATACTCAGAATGAAACTGTTAGCCATTCCa-tttgtctgttcagaaaatatttatgaaa i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9503972 369 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I a score=681251.000000 s hg38.chr12_KI270834v1_alt 111731 49 + 119498 TGCCTGCTACATTCAAAGTACTGTTTT--GAAACTCAAATGTAAAAAGAAT s panTro5.chr12 127397337 49 + 137163284 TGCCTGCTACATTCAAAGTACTGTTTT--GAAACTCAAATGTAAAAAGAAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747628 49 + 135337776 TGCCTGCTACATTCAAAGTACTGTTTT--GAAACTCAAATGTAAAAAGAAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8261177 49 - 8369578 TGCCTGCTACATTCAAAGTACTGTTTT--GAAACTCAAATGTAAAAAGAAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97919226 49 + 106955855 TGCCTGCTACATTCAAAGTACTGTTTG--GAAACTCAAATGTAAAAAGAAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034331 51 + 133663169 TGCCTGCTACATTCAAAGCACTGTTTTAGGAAACTCAAATGTACAAAGAAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128282522 51 + 137757926 tgcctgctacattcaaagcactgttttaggAAACTCAAATGTACAAAGAAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10681014 51 - 16319837 tgcctgctacattcaaagcactgttttaggAAACTCAAATGTACAAAGAAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12304931 51 + 20526591 tgcctgctacattcaaagcactgttttaggAAACTCAAATGTACAAAGAAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119276417 51 + 128539186 TGCCTGCTACATTCAAAGCACTGTTTTAGGAAACTCAAATGTACAAAGAAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 627868 51 + 6255621 tgcctgctacattcaaagcactgttttaggAAACTCAAATGTACAAAGAAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4654265 49 - 8658521 TGCCTGCTACATTCAAAGCACTGTTTT--GAAACTCAAATGTTCAAAGAAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114860857 48 + 124281992 TGCCTGCTACATTCAAAGCACTGTTT---GAAACTCAAATGTAAAAAGAAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 499990 48 - 9212255 TGCCTGCTACATTCAAAGCACCGTTT---GAAACTCAAATGTAAAAAGAAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2918988 48 + 4466143 TGCCTGCTACATTCAATGCACTGTTT---GAAACTCAAATGTAAAAATAAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1621966 48 + 5364348 TGCCTGCTACATTCAAAGCACTGTTT---GAAACTCAAATGTAAAAAGAAT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9504341 49 - 31815103 TGCCTGCTGCAGTCAAAGCACTGTTTT--GAAACTCAAATGCAGAAAGAAT i micMur3.chr21 I 369 I 1293 s proCoq1.NW_012154285v1 6757628 49 - 9870158 TGCCTGCTACATTCAAAGCACTGTTTT--GAAACTCAAAGGTAAAAAGGAT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4343766 49 + 7922563 TCCCTGCTACATTCAAAACACTGTTTT--GAAACTCAAATGTAATAATTCT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33192344 46 - 38964690 TACCTGCTTCATTTGAAGCACCATTTT--GAAAGACAA---TTAAAAGCAC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 882212 48 - 1116856 tgcccactatgttccagttgtgttctC--AAAAGGTAAGTATGAAAGATG- i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124836525 543 + 151834684 I a score=63318.000000 s hg38.chr12_KI270834v1_alt 111780 6 + 119498 --TATCCA s panTro5.chr12 127397386 6 + 137163284 --TATCCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747677 6 + 135337776 --TATCCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8261226 6 - 8369578 --TATCCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97919275 6 + 106955855 --TATCCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034382 6 + 133663169 --TCTCCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128282573 6 + 137757926 --TCTCCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10681065 6 - 16319837 --TCTCCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12304982 6 + 20526591 --TCTCCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119276468 6 + 128539186 --TCTCCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 627919 6 + 6255621 --TCTCCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4654314 6 - 8658521 --TCTCCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114860905 6 + 124281992 --TCTCCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 500038 6 - 9212255 --TCTCCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2919036 6 + 4466143 --TGTCCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1622014 6 + 5364348 --TCTCCA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6757677 6 - 9870158 --TCTCCA i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4343815 6 + 7922563 --TGTCTA i otoGar3.GL873618 C 0 I 364 s dasNov3.JH568189 882260 6 - 1116856 CCTCTC-- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9504390 1293 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I e canFam3.chr26 33192390 0 - 38964690 C a score=76908.000000 s hg38.chr12_KI270834v1_alt 111786 6 + 119498 TGTC-TA s panTro5.chr12 127397392 6 + 137163284 TGTC-TA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747683 6 + 135337776 TGTC-TA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8261232 6 - 8369578 TGTC-TA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97919281 6 + 106955855 TGTC-TA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034388 6 + 133663169 TGTC-TA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128282579 6 + 137757926 TGTC-TA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10681071 6 - 16319837 TGTC-TA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12304988 6 + 20526591 TGTC-TA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119276474 6 + 128539186 TGTC-TA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 627925 6 + 6255621 TGTC-TA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4654320 6 - 8658521 TGTC-TA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114860911 6 + 124281992 TGTC-TA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 500044 7 - 9212255 TGTCTTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2919042 6 + 4466143 TGTC-TA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1622020 6 + 5364348 TGTC-TA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6757683 6 - 9870158 CGTC-TA i proCoq1.NW_012154285v1 C 0 I 392 s dasNov3.JH568189 882266 6 - 1116856 TGTC-TA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9504390 1293 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I e canFam3.chr26 33192390 0 - 38964690 C e otoGar3.GL873618 4343821 364 + 7922563 I a score=665155.000000 s hg38.chr12_KI270834v1_alt 111792 77 + 119498 TTGAATTAAAATTCTGATGTTTAGAGGAGAAGAGGTGTGGGGCTGTCACCTTTGCTCTGCCGCTGGCCGCCTCT-------CTC s panTro5.chr12 127397398 77 + 137163284 TTGAAGTAAAATTCTGATGTTTAGAGGAGAAGAGATGTGGGGCTGTCACCTTTGCTCTGCCGCTGGCCGCCTCT-------CTC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747689 77 + 135337776 TTGAAGTAAAATTCTGATGTTTAGAGGAGAAGAGATGTGGGGCTGTCACCTTTGCTCTGCCGCTGGCCGCCTCT-------CTC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8261238 74 - 8369578 TTGAATTAAAATTCTGATGTTTA---GAGAAGAGATGTGGGGCTGTCACCTTTGCTCTGCCGCTGGCctcctct-------ctc i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97919287 77 + 106955855 TTGAATTAAAACTCTGATGTTTACAGGAGAAGAGATGTGGGGCTGTCACCTTTGCTCTGCCGCTGGCCTCCTCT-------CTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034394 76 + 133663169 TTGCATTAAAACTCTGATGTTTAGAGGAGAAGAGGTGTGGTGCTGTCA-CTCTGCTCTGCCGCTGGCCTCCTCT-------CTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128282585 76 + 137757926 TTGCATTAAAACTCTGATGTTTAGAGGAGAAGAGGTGTGGTGCTGTCA-CTCTGCTCTGCCGCTGGCCTCCTCT-------CTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10681077 76 - 16319837 TTGCATTAAAACTCTGATGTTTAGAGGAGAAGAGGTGTGGTGCTGTCA-CTTTGCTCTGCCGCTGGCCTCCTCT-------CTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12304994 76 + 20526591 CTGCATTAAAACTCTGATGTTTAGAGGAGAAGAGGTGCGGTGCTGTCA-CTGTGCTCTGCCGCTGGCCTCCTCT-------CTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119276480 74 + 128539186 TTGTATTAAAACTCTGATGTTTAGAGGAGAAGAGGTGTGGTGCTGTCA-CTTTGCTCTGCCGCTGGCCTC--CT-------CTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 627931 71 + 6255621 CTGCATTAAAACTCTGATGTTTA---GAGAAGAGGTGTGGTGCTGTCA-CTGTGCTCTGCCGCTGGCCTC--CT-------CTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4654326 73 - 8658521 TTGCATTAAAACTCCGATGTTTA---GAGAAGAGGTGTGGTGCTGTCA-CTCTGCTCTGCCGCTGGCCTCCTCT-------CTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114860917 74 + 124281992 TTGCATTAAAACTCTGATGTT---AAGAGAAGGGGTGTGGGGCTGTCACCTCTGCTCTGCCACTGGCCTCctct-------ctc i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 500051 84 - 9212255 TTGCATTAAAACTCTGATGTTGAGAGGAGAAGGGGTGTGGGGCTGTCACCTTTGCTCTGCCACTGCCCCCCCCCACACACACTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2919048 77 + 4466143 TTGCATTAAAACTCTGATGTTAATAGGAGAAGGGGTGTGGGGCTGTCACCTCTGCTCTACCACTGGCctcctct-------ctt i cebCap1.NW_016107484v1 C 0 I 31 s aotNan1.NW_018491581v1 1622026 77 + 5364348 TTGCATTAAAACTCTGATGTTAAGAGGAGAACGGGTGTGGAGCTGTCACCTCTGCTCTGCCACTGGCctcctct-------ctt i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33192390 66 - 38964690 --------AAACTCTGAAGCTGCAGAGAGATAGGG---GAGGCCGCCACCTTCCCTGCCGCACAGGCCCTCTGT-------CTC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 882272 46 - 1116856 AAGCACAACCACCCT------------------------------CCACCTTGCCTCCAACG-TGGTCTCCTCT-------CCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9504390 1293 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I e proCoq1.NW_012154285v1 6757689 392 - 9870158 I e otoGar3.GL873618 4343821 364 + 7922563 I a score=8281.000000 s hg38.chr12_KI270834v1_alt 111869 1 + 119498 A s panTro5.chr12 127397475 1 + 137163284 A i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747766 1 + 135337776 A i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8261312 1 - 8369578 a i gorGor5.CYUI01015152v1 C 0 I 1 s nomLeu3.chr10 97919364 1 + 106955855 A i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034470 1 + 133663169 A i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128282661 1 + 137757926 A i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10681153 1 - 16319837 A i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12305070 1 + 20526591 A i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119276554 1 + 128539186 A i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 628002 1 + 6255621 A i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4654399 1 - 8658521 A i colAng1.NW_012116043v1 C 0 C 0 s canFam3.chr26 33192456 1 - 38964690 A i canFam3.chr26 C 0 I 193 s dasNov3.JH568189 882318 1 - 1116856 A i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9504390 1293 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I e proCoq1.NW_012154285v1 6757689 392 - 9870158 I e otoGar3.GL873618 4343821 364 + 7922563 I e aotNan1.NW_018491581v1 1622103 0 + 5364348 C e cebCap1.NW_016107484v1 2919125 31 + 4466143 I e saiBol1.JH378194 500135 0 - 9212255 C e calJac3.chr9 114860991 0 + 124281992 C a score=52454.000000 s hg38.chr12_KI270834v1_alt 111870 9 + 119498 CCCCCCTAC s panTro5.chr12 127397476 8 + 137163284 -CCCCCTAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747767 8 + 135337776 -CCCCCTAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8261314 9 - 8369578 cccccctac i gorGor5.CYUI01015152v1 I 1 C 0 s nomLeu3.chr10 97919365 9 + 106955855 CCCCCCTAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034471 9 + 133663169 CCCCGCTCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128282662 9 + 137757926 CCCCGCTCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10681154 9 - 16319837 CCCCGCTCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12305071 9 + 20526591 CCCCGCTCC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119276555 9 + 128539186 CCCCGCTCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 628003 9 + 6255621 CCCCGCTCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4654400 9 - 8658521 CCCCGCTCC i colAng1.NW_012116043v1 C 0 I 102 s calJac3.chr9 114860991 9 + 124281992 tctctctct i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 500135 9 - 9212255 TCTCTCTCT i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1622103 9 + 5364348 tctctctct i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 882319 9 - 1116856 TTCTCCTGT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9504390 1293 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I e proCoq1.NW_012154285v1 6757689 392 - 9870158 I e canFam3.chr26 33192457 193 - 38964690 I e otoGar3.GL873618 4343821 364 + 7922563 I e cebCap1.NW_016107484v1 2919125 31 + 4466143 I a score=-40007.000000 s hg38.chr12_KI270834v1_alt 111879 12 + 119498 CC--------CCGTCTCTCT s panTro5.chr12 127397484 12 + 137163284 CC--------CCGTCTCTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747775 12 + 135337776 CC--------CCGTCTCTca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8261323 12 - 8369578 cc--------ccttcacaca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97919374 20 + 106955855 CCGTCTCTCTCTCTCACTca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034480 3 + 133663169 -----------------CTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128282671 3 + 137757926 -----------------CCG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10681163 3 - 16319837 -----------------CCG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12305080 3 + 20526591 -----------------CCG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119276564 3 + 128539186 -----------------CTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 628012 3 + 6255621 -----------------CCG i manLeu1.NW_012103587v1 C 0 C 0 s calJac3.chr9 114861000 4 + 124281992 ----------------ctct i calJac3.chr9 C 0 I 12 s saiBol1.JH378194 500144 4 - 9212255 ----------------CTCT i saiBol1.JH378194 C 0 I 24 s aotNan1.NW_018491581v1 1622112 4 + 5364348 ----------------ctct i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 882328 1 - 1116856 ------------------C- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9504390 1293 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I e proCoq1.NW_012154285v1 6757689 392 - 9870158 I e canFam3.chr26 33192457 193 - 38964690 I e otoGar3.GL873618 4343821 364 + 7922563 I e cebCap1.NW_016107484v1 2919125 31 + 4466143 I e colAng1.NW_012116043v1 4654409 102 - 8658521 I a score=19921.000000 s hg38.chr12_KI270834v1_alt 111891 4 + 119498 caca s panTro5.chr12 127397496 4 + 137163284 CTca i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747787 4 + 135337776 caca i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8261335 4 - 8369578 caca i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97919394 4 + 106955855 caca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034483 4 + 133663169 CACC i rheMac8.chr11 C 0 I 1 s macFas5.chr11 128282674 4 + 137757926 CACC i macFas5.chr11 C 0 I 1 s macNem1.NW_012010578v1 10681166 4 - 16319837 CACC i macNem1.NW_012010578v1 C 0 I 1 s cerAty1.NW_012001186v1 12305083 4 + 20526591 CACC i cerAty1.NW_012001186v1 C 0 I 1 s chlSab2.chr11 119276567 4 + 128539186 CACC i chlSab2.chr11 C 0 I 1 s manLeu1.NW_012103587v1 628015 4 + 6255621 CACC i manLeu1.NW_012103587v1 C 0 I 1 s calJac3.chr9 114861016 4 + 124281992 ctcA i calJac3.chr9 I 12 C 0 s saiBol1.JH378194 500172 4 - 9212255 caca i saiBol1.JH378194 I 24 C 0 s cebCap1.NW_016107484v1 2919156 4 + 4466143 caca i cebCap1.NW_016107484v1 I 31 C 0 e micMur3.chr21 9504390 1293 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I e proCoq1.NW_012154285v1 6757689 392 - 9870158 I e dasNov3.JH568189 882329 0 - 1116856 C e canFam3.chr26 33192457 193 - 38964690 I e otoGar3.GL873618 4343821 364 + 7922563 I e aotNan1.NW_018491581v1 1622116 0 + 5364348 C e colAng1.NW_012116043v1 4654409 102 - 8658521 I a score=24512.000000 s hg38.chr12_KI270834v1_alt 111895 15 + 119498 cacacacacacaca--------------------------------------------g s panTro5.chr12 127397500 15 + 137163284 cacacacacacaca--------------------------------------------g i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747791 17 + 135337776 cacacacacacacacT------------------------------------------G i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8261339 32 - 8369578 cacacacacacacacc---------------------------acacacacacacacac i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97919398 59 + 106955855 cacacacacacacacacacacacacacacacacacacacacacacacacacacacacaG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034488 15 + 133663169 CACACGCACAGACA--------------------------------------------G i rheMac8.chr11 I 1 C 0 s macFas5.chr11 128282679 15 + 137757926 CACACGCACAGACA--------------------------------------------G i macFas5.chr11 I 1 C 0 s macNem1.NW_012010578v1 10681171 15 - 16319837 CACACGCACAGAGA--------------------------------------------G i macNem1.NW_012010578v1 I 1 C 0 s cerAty1.NW_012001186v1 12305088 13 + 20526591 CACACGCACAG--A--------------------------------------------G i cerAty1.NW_012001186v1 I 1 C 0 s chlSab2.chr11 119276572 15 + 128539186 CACACGCACAGAGA--------------------------------------------G i chlSab2.chr11 I 1 C 0 s manLeu1.NW_012103587v1 628020 13 + 6255621 CACACGCAC--AGA--------------------------------------------G i manLeu1.NW_012103587v1 I 1 C 0 s colAng1.NW_012116043v1 4654511 15 - 8658521 CACACACGCACAGA--------------------------------------------G i colAng1.NW_012116043v1 I 102 C 0 s calJac3.chr9 114861020 12 + 124281992 --CACACACACACA--------------------------------------------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 500176 25 - 9212255 --cacacacacaca--------------------------------cacacTCTCTCTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2919160 35 + 4466143 --cacacacacaca----------------------gacacacacacactctctctctc i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1622116 12 + 5364348 --cacacacacaca--------------------------------------------- i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9504390 1293 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I e proCoq1.NW_012154285v1 6757689 392 - 9870158 I e dasNov3.JH568189 882329 0 - 1116856 C e canFam3.chr26 33192457 193 - 38964690 I e otoGar3.GL873618 4343821 364 + 7922563 I a score=2563204.000000 s hg38.chr12_KI270834v1_alt 111910 290 + 119498 acTCT-----------------TTCCCACTTCCTGCTCAGAGAGTGA-GCTG-TCTCGCCTCTGTGGCTCTTAC--CCTTGGTCCCTCCCTGCCCCTGCCCTAACACTTCGGGCCTCTGCCTCCTTTTGCTGTCCCTGGGTGCCTGCCCTCACCCAG----TCCTTCAGCA------------AACACCAGC-CACCTCCTTCTCCTGCTCTTCT---GGTGACCTGCAG------------------------------TCCCTGGTCAC-----------CTCACATA-GCAC----------------CCTTGGCTCTAAA-CCCTGGGTCACCATCCTACTCCTCCTAAC--------GCTGGCTGGCTGGCC-ATCCTCCTTGCCTGG-CCCCTG s panTro5.chr12 127397515 290 + 137163284 acTCT-----------------TTCCCACTTCCTGCTCAGAGAGTGA-GCTG-TCTCGCCTCTGTGGCTCTTAC--CCTTGGTCCCTCCCTGCCCCTGCCCTAACACTTCGGGCCTCTGCCTCCTTTTGCTGTCCCTGGGTGCCTGCCCTCACCCAG----TCCTTCAGCA------------AACACCAGC-CGCCTCCTTCTCCTGCTCTTCT---GGTGACCTGCAG------------------------------TCCCTGGTCAC-----------CTCACATA-GCAC----------------CCTTGGCTCTAAA-CCCTGGGTCACCATCCTACTCCTCCTAAC--------GCTGGCTGGCTGGCC-ATCCTCCTTGCCTGG-CCCCTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125747808 290 + 135337776 ACTCT-----------------TTCCCACTTCCTGCTCAGAGAGTGA-GCTG-TCTCGCCTCTGTGGCTCTTAC--CCTTGGTCCCTCCCTGCCCCTGCCCTAACACTTCAGGCCTCTGCCTCCTTTTGCTGTCCCTGGGTGCCTGCCCTCACCCAG----TCCTTCAGCA------------AACACCAGC-CGCCTCCTTCTCCTGCTCTTCT---GGTGACCTGCAG------------------------------TCCCTGGTCAC-----------CTCACATA-GCAC----------------CCTTGGCTCTAAA-CCCTGGGTCACCATCCTACTCCTCCTAAC--------GCTGGCTGGCTGGCC-ATCCTCCTTGCCTGG-CCCCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8261371 310 - 8369578 actctctctctctctctctctctTCCCACTTCCTGCTCAGTGAGTGA-GCTG-TCTCGCCTCTGTGGCTCTTAC--CCTTGGTCCCTCCCTGCCCCTGCCCTAACACTTCAGGCCTCTGCCTCCTTTTGCTGTCCCTGGGTGCCTGCCCTCACCCAG----TCCTTCAGCA------------AACACCAGC-CACCTCCTTCTCCTGCTCCTCTGGCGGCGACCTGCAG------------------------------TCCCTGGTCAC-----------CTCACATG-GCAC----------------CCTTGGCTCTAAA-CCCTGGGTCACCATCCTACTCCTCCTAAT--------GCTGGCTGGCTGGCC-ATCCTCCTTGCCTGG-CCCCAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97919457 275 + 106955855 ACTCT-----------------TTCTCAATTCCTGCTCAGAGAGTGA-GCTA-TCTCACCTCTGTGGCTCTTGC--CCTTGGTCCCTCGCTGCCCCTGCCCTAACACTTCGGGCCTCTGCCTCCTTTTGCTGTCCCTGGGTGCCTGCCCTCATCCAG----TCCTTCAGCA------------AACACCAGC-TGCCTCC------------------GGTGACCTGCAG------------------------------TCCCTGGTCCC-----------CTCACATA-GCAC----------------CCTTGGCTCTAAA-CCCTGGGTCACCATCCTACTCCTCCTAAC--------GCTGGCTGGCTGGCC-ATCCTCCTTGCCTGG-CCCCTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034503 286 + 133663169 ACTCC-----------------TTCCCACTTCCTGCTCAGAGA--CA-GCTG-CTTCATCTCTGTGGCTCCTGC--CCTTGGCCCCTCGCTG---CTGCCCTAACACTTCGGGCCTCTGCCTC---CTGCTGTCCCTGGGTGCCTGCCCTCACCCAG----TCCTTCAGCA------------CATGCCAGC-TGCCTCCTTCTCCTGCTCCGCT---GGTGACCTGCAG------------------------------TCCCTGGTCAC-----------CTCACACA-GCGC----------------CCTTGGCTCTCAA-CCCTGGGTAGCCATCCTGCTCCTCCTAAC----GCTGGCTGGCTGGCTGGCC-ATCCTCCTTGATTGG-CCCCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128282694 286 + 137757926 ACTCC-----------------TTCCCACTTCCTGCTCAGAGA--CA-GCTG-CTTCATCTCTGTGGCTCCTGC--CCTTGGCCCCTCGCTG---CTGCCCTAACACTTCGGGCCTCTGCCTC---CTGCTGTCCCTGGGTGCCTGCCCTCACCCAG----TCCTTCAGCA------------CATGCCAGC-TGCCTCCTTCTCCTGCTCCGCT---GGTGACCTGCAG------------------------------TCCCTGGTCAC-----------CTCACACA-GCGC----------------CCTTGGCTCTCAA-CCCTGGGTAGCCATCCTGCTCCTCCTAAC----GCTGGCTGGCTGGCTGGCC-ATCCTCCTTGATTGG-CCCCTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10681186 286 - 16319837 ACTCC-----------------TTCCCACTTCCTGCTCAGAGA--GA-GCTG-CTTCATCTCTGTGGCTCCTGC--CCTTGGCCCCTCGCTG---CTGCCCTAACACTTCGGGCCTCTGCCTC---CTGCTGTCCCTGGGTGCCTGCCCTCACCCAG----TCCTTCAGCA------------CATGCCAGC-TGCCTCCTTCTCCTGCTCCGCT---GGTGACCTGCAG------------------------------TCCCTGGTCAC-----------CTCACACA-GCGC----------------CCTTGGCTCTCAA-CCCTGGGTAGCCATCCTGCTCCTCCTAAC----GCTGGCTGGCTGGCTGGCC-ATCCTCCTTGATTGG-CCCCTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12305101 286 + 20526591 ACTCC-----------------TTCCCACTTCCTGCTCAGAGA--GA-GCTG-CTTCATCTCTGTGGCTCCTGC--CCTTGGCCCCTCGCTG---CTGCCCTAACACTTCGGGCCTCTGCCTC---CTGCTGTCCCTGGGTGCCTGCCCTCACCCAG----TCCTTCAGCA------------CATGCCAGC-TGCCTCCTTCTCCTGCTCCGCT---GGTGACCTGCAG------------------------------TCCCTGGTCAC-----------CTCACACA-GCGC----------------CCTTGGCTCTCAA-CCCTGGGTAGCCATCCTGCTCCTCCTAAC----GCTGGCTGGCTGGCTGGCC-ATCCTCCTTGATTGG-CCCCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119276587 290 + 128539186 ACTCC-----------------TTCCCACTTCCTGCTCAGAGA--CA-GCTG-CTTCATCTCTGTGGCTCCTGC--TCTTGGCCCCTCGCTG---CTGCCCTAACACTTCGGGCCTCTGCCTC---CTGCTGTCCCTGGGCGCCTGCCCTCACCCAG----TCCTTCAGCA------------CATGCCAGC-TGCCTCCTTCTCCTGCTCCTCT---GGTGACCTGCAG------------------------------TCCCTGGTCAC-----------CTCACAAA-GCGC----------------CCTTGGCTCTCAA-CCCTGGGTAGCCATCCTGCTCCTCCTAACActggctggctggctggccggcC-ATCCTCCTTGCTTGG-CCCCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 628033 286 + 6255621 ACTCC-----------------TTCCCACTTCCTGCTCAGAGA--GA-GCTG-CTTCATGTCTGTGGCTCCTGC--CCTTGGCCCCTCGCTG---CTGCCCTAACACTTCGGGCCTCTGCCTC---CTGCTGTCCCTGGGTGCCTGCCCTCACCCAG----TCCTTCAGCA------------CATGCCAGT-TGCCTCCTTCTCCTGCTCCGCT---GGTGACCTGCAG------------------------------TCCCTGGTCAC-----------CTCACACA-GCGC----------------CCTTGGCTCTCAA-CCCTGGGTAGCCATCCTGCTCCTCCTAAC----GCTGGCTGGCTGGCTGGCC-ATCCTCCTTGATTGG-CCCCTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4654526 287 - 8658521 ACTCT-----------------TTCCCACTTCCTGCTCAGGGT--GA-GCTG-CTTCATCTCTGTGGCTGCTGC--CCTTGGCCCCTCGCTG---CTGCCCTAACACTTCAGGCCTCTGCCTCCTTCTGCTGTCCCTGGGTGCCTGTCCTCACCCAG----TCCTTCAGCA------------CATGCCAGC-TGCCTCCTTCTCCTGCTCCTCT---GGTGA-CTGCAG------------------------------TCCCTGGTCAC-----------CTCACACA-GCGC----------------CCTTGGCTCTCAA-CCCTGGGTAGTCATCCTGCTCCTCCTAAC-----CTGGCTGGCTGGCTGGCC-ATCCTCCTTGCCTGG-CCCCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114861032 273 + 124281992 ----------------------CTCCCACTTTCTCCTCAGAGAATGA-GCTGTCCTCCTCTCTGTGGCTCTTGC--CCTTGGCCCTTTGCTGCCCCTGCCCTAACACCTCAGGTCT---CCTT---CTGCTGTC--------CCTGCCCTCACCCAG----TCCTTCAGCA------------AATGCCAGC-TGCCTCCTCCTCCTGCTCCTCT---GGCAACCCACAG------------------------------TCTCTGGTCAC-----------CTTACGTA-GCAC----------------CCTTGGCTCCCAA-CCCTGGGTCACTGTCCTGCTCCTCCTAAT--------GCTGCGTGGCTGGCC-AGGCTCCTTGTCTGGCCCCCCG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 500201 276 - 9212255 TCTCT-----------------CTCCCACTTTCTGCTCAGAGACTGA-GCTGTCCTCCTTTCTGTGGCTCTTGC--CCTTGGCCCTTTGCTG-CCCTGCCCTAACACCTCAGGCCT---CCTT---CTGCTGTC--------CCTGTCCTCACCCAG----TCCTTCGGCA------------AATGCCAGC-TGCCTCCTTCTCCTGCTCCTCT---GGCAACCTGCAG------------------------------TCCCTGGTCAC-----------CTTACGTA-GCAC----------------CCTTGGCTCCCAA-CCCTGGGTCACTGTCCTGCTGCTCCTAAC--------GCTGCCTGGCTGGCC-ATGCTCCTTGTCTGG-CCCCTA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2919195 277 + 4466143 tctct-----------------ctctcactttctgctcAGAGAATGA-GCTGTCCTCCTCTCTGTGGCTCTTGC--CCTTGGCTCTTTGCTGCCCCTGCCCTAACACCTCAGGTCT---CTTC---CTGCTGTC--------CCTGCCCTCACCCAG----TCCTTCAGCA------------AATGCCAGT-TGCCTCCTTCTCCTGCTCCTCT---GGCAACCTGCAG------------------------------TCCCTGGTCAC-----------CTTACGTA-GCAC----------------CCTTGGCTCCCAA-CCCTGGGTCACTGTCCTGCTCCTCCTAAC--------GCTGCCTGGCTGGCC-ATGCTCCTTGTCTGG-CCCCTA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1622128 272 + 5364348 ----------------------ctcccactttctgctcAGAGAATGA-GCTGTCCTCCTCTCTGTGGCTCTTGC--CCTTGGCCCTTTGCTGCCCCTGCCCTAACACCTCAGGCCT---CCTC---CTGCTGTC--------CCTGCCCTCACCCAG----TCCTTCAGCA------------AATGCCAGT-TGCCTCCTTCT-CTGCTCCTCT---GGCAACCTGCAG------------------------------TCCCTGGTCAC-----------CTCATGTA-GCAC----------------CCCTGGCTCCCAA-CCCTGGGTCACTGTCCTGCTCCTCCTAAC--------ACTGCCTGGCTGGCCAATGCTCCTTGTCTGG-CCCCTG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4344185 275 + 7922563 ATCCT-----------------CTCCCGCCTCCTACTTAGAGAGTGAGGCTT-CCCTGTCCCTGTGT----------------------------CCACCCTGACACCAGGGGCCGCTGCCTAGTTCTGCTGCC-CTGTGTACCTGCCCTCACCCTG-----CCTGCTGCA------------CACATCACC-ACCCCACCACCTCTGCTCATTT---AGTGACCTGTAG------------------------------ACCTTGTCCCCAGCTGTCTGCACTCACACCTGCTG----------------GCTAAACTCCAGA-CCCAGTGCTATGACTCTGCTTGTCCTCAT--------ATTGCCTGGCTGGCC-TTCCTCCTCACCTGG-CTCCTA i otoGar3.GL873618 I 364 C 0 s dasNov3.JH568189 882329 312 - 1116856 ------------------------------TCCTGCTCTGAGAGCGA-GGAG-CCCCTATGCTGTGCTCCCCACTGTCCTGGCATCTCTTTA--CCCATAAGAGCAGATGGGACTGCTACTAG---TCACTGTACACTGCCACCTGTCATCACCCAACAACTCCTTCCGCAAGTCTTCAGCACAATGTCAGCATACCTTACTTTCCTGCCCCACT---AGTGGCCT-CAGCACCACATCTTGAACCACTTCTCAGCCTTCCCCTTGCTGAC-----------GGCATTTA-GCGTCACATGCAGGCCACTGCCTGGGTCCTGAAGCCCTTTGCCACCACCCTGCCCCTCCTCAG-----------------CTTGCC-CTCCA----------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9504390 1293 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I e proCoq1.NW_012154285v1 6757689 392 - 9870158 I e canFam3.chr26 33192457 193 - 38964690 I a score=1203846.000000 s hg38.chr12_KI270834v1_alt 112200 95 + 119498 GGAAG---------------TTCTTTCTAGACTCTTCCTTGCTGGTCTGG--AATTCAACTTGAGCATCAGCTCCCGATTCAGTGTCTCCTGAGCACCACTTCTCCAAGTGA s panTro5.chr12 127397805 95 + 137163284 GGAAG---------------TTCTTTCTAGACTCTTCCTTGCTGGTCTGG--AATTCAACTTGAGCATCAGCTCCCGATTCAGTGTCTCCTGAGCACCACTTCTCCAAGTGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125748098 95 + 135337776 GGAAG---------------TTCTTTCTAGACTCTTCCTTGCTGGTCTGG--AATTCAACTTGAGCATCAGCTCCCGATTCAGTGTCTCCTGAGCACCACTTCTCCAAGTGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8261681 95 - 8369578 GGAAG---------------TTCTTTCTAGACTCTTCCTTGCTGGTCTGG--AATTCAACTTGAGCGTCAGCTCCCGATTCAGTGTCTCCTGAGCACCACTTCTCCAAGTGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97919732 90 + 106955855 GGAAG---------------TTCTTTCTAGACTCTTCCTTGCTGGTCTGG-------AACTCGAGTGTCAACTCCCGATTCAGTGTCTCCTGAGCACCACTTCTCCAAGTGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034789 95 + 133663169 GGAAG---------------TTCTTTCTAGACTCTTCCTTTCTGGTCTGG--AACTCACCTTGAGTGTCACCTCCCGATTCAGTGTCTCCTGAGCACCACTTCTCCAAGTGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128282980 95 + 137757926 GGAAG---------------TTCTTTCTAGACTCTTCCTTTCTGGTCTGG--AACTCACCTTGAGTGTCACCTCCCGATTCAGTGTCTCCTGAGCACCACTTCTCCAAGTGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10681472 95 - 16319837 GGAAG---------------TTCTTTCTAGACTCTTCCTTCCTGGTCTGG--AACTCACCTTGAGTGTCACCTCCCGATTCAGTGTCTCCTGAGCACCACTTCTCCAAGTGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12305387 95 + 20526591 GGAAG---------------TTCCTTCTAGACTCTTCCTTCCTGGTCTGG--AACTCACCTTGAGTGTCAACTCCCGATTCAGTGTCTCCTGAGCACCACTTCTCCAAGTGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119276877 95 + 128539186 GGAAG---------------TTCTTTCTAGACTCTTCCTTGCTGGTCTGG--AACTCACCTTGAGTGTCAACTCCCGATTCAGTGTCTCCTGAGCACCACTTCTCCAAGTGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 628319 95 + 6255621 GGAAG---------------TTCTTTCTAGACTCTTCCTTCCTGGTCTGG--AACTCACCTTGAGTGTCAACTCCCGATTCAGTGTCTCCTGAGCACCACTTCTCCAAGTGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4654813 95 - 8658521 GGAAG---------------TTCTTTCTAGACTCTTCCTTGCTGGTCTGG--AACTCACCTTGAGTGTCAACTCCCGATTCAGTGTCTCCTGAGCACCACTTCTCCAAGTGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114861305 95 + 124281992 GGAAG---------------TTCTTTCTTGACTCTTCGTTGCTGGTCTGG--AGCTCACCTTGAATGTTAACTCCTGACTCAGTGTCTCCTGAGCACCACTTCTCCAAGTGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 500477 95 - 9212255 GGAAG---------------TTCTTTCTAGATTCTTTCTTGCTGGTCTGG--AACTCACCTTGAATGTTAACTCCTGACTCAGTGTCTCCTGTGCACCACTTCTCCAAGTGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2919472 95 + 4466143 GGAAG---------------TTCTTTCTAGATTCTTCCTTGCTGGTCTGG--AACTCACCTTGAATGTTAACTCCTGACTCAGTGTCTCCTGAGCACCACTTCTCCAAGTGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1622400 95 + 5364348 GGAAG---------------TTCTTTCTAGACTCTTCCTTGCCGGTCTGG--AACTCACCTTGAATGTTAACTCCTGGCTCAGTGTGTCCTGAGCACCACTTCTCCAAGTGA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6758081 93 - 9870158 GGAAG---------------TCCTTTCTAGACTCTTCCTTGCTGATCTGG--AACTCACCTTGC--GTCCACTCCCGAGTCAGTGTCTCCTGAGCTCCAGTTCTCCCAGTGA i proCoq1.NW_012154285v1 I 392 I 892 s otoGar3.GL873618 4344460 93 + 7922563 GGAAG---------------TTCTTTCTAGACTCTTCCTAGCTGTTCTAG--AATAAACTTTGA--GTCAGCTCCTGAGTCAGCATCTCCTGAGTGCCAGTTCTCCCAGTGA i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 882641 109 - 1116856 GAAAGTGGAGTGGGTTGTCCTCCTCCCCACATTCCTCCTTGCTGATCTGGTTCTCTCACCTAGAACGTCAACTCCCGATTC--TGCCTCTGGAGTGTGAATGCTGC-AGTGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9504390 1293 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I e canFam3.chr26 33192457 193 - 38964690 I a score=6349830.000000 s hg38.chr12_KI270834v1_alt 112295 629 + 119498 GTGTCCGTCAGACA-CACCCTCAAGTCCAGATAGCTGCTCTGCT-TCCCACATCTTGACTCTCCCAGGGAAACTGGA---------TGCAGTCGCCATCCCTGGC-CTCCCCTCCCTGACTGTGC---C-------------TTTCTGCTGGCTGCTCAGTG--------------CTGCCC-----C-----CTCCCTGCTCCTCCAGCC-GGCCTTGGTCCCACCTCCTCTCTGGTCTT------------------CGTTTCAGCCCATCCTGTATTTAGGAAGCTTGGTCACCCC-CTAAATATTCTTGTCCTCTGTTCAAA-ATGGTTCCTCACTGCCTAATAAAACCCAAACTGCCAGA--TGCCTTCCAGT----TCCTCAATCTGTCCTGAATGTTA--------------TCTGCTCCCAC----------ATAAATCA-AAGCTTCCATCACTCTCC-CCAAGCCACCACCTCTTGTTCTGTCTCTATTGTACCCTCTGTCCT-TGCCCTAACTCCAGACCTGCACGCCCAGTTTCCCTGTACCA-ACTCCACCACCC-AGGGCCT-GCCTAGGCACTGGACGCCACTGGACGTCTTTCCCGGGCTTCTG--------------------TCTGTC--------TTG---CTTTGAATTTTC-CCACCTGCCTGAGCTAGCAGCAGCTCTGCAGCATGTCCCGCC-GCCAGACTC-TGAGCTTTTGAGGGCCC-ACAGCTGACTGGACTGGTCTTGTGCAGGA s panTro5.chr12 127397900 619 + 137163284 GTGTCCGTCAGACA-CACCCTCAAGTCCAGATAGCTGCTCTGCT-TCCCACATCTTGACTCTCCCAGGGAAACTGGA---------TGCAGTCGCCATCCCTGGC-CTCCCCTCCCTGACTGTGC---C-------------TTTCTGCTGGCTGCTCAGTA--------------CTGTCC-----C-----CTCCCTGCTCCTCCAGCC-GGCCTTGGTCCCACCTCCTCTCTGGTCTT------------------CGTTTCAGCCCATCCTGTATTTAGGAAGCTTGGTCACCCC-CTAAATATTCTTGTCCTCTGTTCAAA-ATGGTTCCTCACTGCCTAATAAAACCCAAACTGCCaga--tgccttccagt----tcctcaatctgtcctgaatgtta--------------tctgctcccac----------atgaatca-AAGCTTCCATCACTCTCC-CCAAGCCACCACCTCTTGTTCTGTCTCTATTGTACCCTCTGTCCT-TGACCTAACTCCAGACCTGCACGCCCAGTTTCCCTGTACCA-ACTCCACCACCC-AGGGCCT-GCCTAGG----------CACTGGACGTCTTTCCCGGGCTTCTG--------------------TCTGTC--------TCG---CTTTGAATTTTC-CCACCTGCCTGAGCTAGCAGCAGCTCTGCAGCATGTCCCGCC-GCCAGACTC-TGAGCTTTTGAGGGCCC-ACAGCTGACTGGACTGGTCTTGTGCAGGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125748193 629 + 135337776 GTGTCCGTCAGACA-CACCCTCAAGTCCAGATAGCTGCTCTGCT-TCCCACATCTTGACTCTCCCAGGGAAACTGGA---------TGCAGTCGCCATCCCTGGC-CTCCCCTCCCTGACTGTGC---C-------------TTTCTGCTGGCTGCTCAGTA--------------CTGTCC-----C-----CTCCCTGCTCCTCCAGCC-GGCCTTGGTCCCACCTCCTCTCTGGTCTT------------------CGTTTCAGCCCATCCTGTATTTAGGAAGCTTGGTCACCCC-CTAAATATTCTTGTCCTCTGTTCAAA-ATGGTTCCTCACTGCCTAATAAAACCCAAACTGCCAGA--TGCCTTCCAGT----TCCTCAATCTGTCCTGAATGTTA--------------TCTGCTCCCAC----------ATGAATCA-AAGCTTCCATCACTCTCC-CCAAGCCACCACCTCTTGTTCTGTCTCTATTGTACCCTCTGTCCT-TGACCTAACTCCAGACCTGCACACCCAGTTTCCCTGTACCA-ACTCCACCACCC-AGGGCCT-GCCTAGGCACTGGACGCCACTGGACGTCTTTCCCGGGCTTCTG--------------------TCTGTC--------TCG---CTTTGAATTTTC-CCACCTGCCTGAGCTAGCAGCAGCTCTGCAGCATGTCCCGCC-GCCAGACTC-TGAGCTTTTGAGGGCCC-ACAGCTGACTGGACTGGTCTTGTGCAGGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8261776 629 - 8369578 GTGTCCGTCAGACA-CACCCTCAAGTCCAGATAGCTGCTCTGCT-TCCCACATCTTGACTCTCCCAGGGAAACTGGA---------TGCAGTCGCCATCCCTGGC-CTCCCCTCCCTGACTGTGC---C-------------TTTCTGCTAGCTGCTCAGTG--------------CTGTCC-----C-----CTCCCTTCTCCTCCAGCC-GGCCTTGGTCCCACCTCCTCTCCGGTCGT------------------CTTTTCAGCCCATCCTGTATTTAGGAAGCTTGGTCACCCC-CTAAATATTCTTGTCCTCTGTTCAAA-ATGGTTCGTCACTGCCTAATAAAACCCAAACTTCCAGA--TGCCTTCCAGT----TCCTCAATCTGTCCTGAATGTTA--------------TCTGCTCCCAC----------ATAAATCA-AAGCTTCCATCACTCTCC-CCAAGCCACCACCTCTTGTTCTGTCTCTATTGTACCCTCTGTCCT-TGACCTAACTCCAGACCTGCACGCCCAGTTTCCCTGTACCA-ACTCCACCACCC-AGGGCCT-GCCTAGGCACTGGACGCCACTGGACGTCTTTCCCGGGCTTCTG--------------------TCTGTC--------TCG---CTTTGAATTTTC-CCACCTGCCTGAGCTAGCAGCAGCTCTGCAGCATGTCCCACT-GCCAGACTC-TGAGCTTTTGAGGGCCC-ACAGCTGACTGGACTGGTCTTGTGCAGGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97919822 627 + 106955855 GTGTCTGTCAGACA-CACCCTCAAGTCCAGATAGCTGCTCTGCT-TCCCACATCTTGACTCTCCCAGGGAGACTGGA---------TACAGTCACCATCCCTGGC-CTCCCCTCCCTGACTGTGT---C-------------TTTCTGCTGGCTGCTCAGTG--------------CTGTCC-----C-----CTCCCTGTGTCTCCAGCT-GGCCTTGGTCCCACCTCCTCTCTGGTCTT------------------CGTTTCAGCCCATCCTGTATTTAGGAAGCTTGGTCACCCC-CTAAATACTCTTGTCCTCTGTTCAAA-ATGGTTCCTCACTGCCTAATAAAACCCAAACTGCCAGA--TGCCTTCCAGT----TCCTCAATCTGTCCCGAATGTTA--------------TCTGCTCCCTC----------ATAAATCA-AAGCTTCCATCACTCTCC-CCAAGCCACCACCTCTTGTTCTGTCTCTATTGTACCCTCTGTCCT-TGACCTAACTCCAGACCTGCACGCCCAGTTTCCCTGTACCA-ACTCCACCACCT-AGGGCCT-GCCTAGGCACTGGACGCCACTGGACGTCTTTCCTGGGCTTCTG--------------------TCTGTC--------TCG---CTTTGAATTTTC-CCACCTGCCTGAGCTAGCAGCAGCTCTGCAGCATGTCCCGCC-GCCAGA--C-TGAGCTTTTGAGGGCCC-ACAGCTGACTGGACTGGTCTTGTGCAGGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124034884 627 + 133663169 GTCTCCATCAGACA-CACCCTCAAGTCCAAATAGCTGCTCTGCT-TCCTACATCTTGACTCTCCCAGGGAGACTGGA---------TGCAGTTGCCATCCCCAGC-CTCCCCTTCCTGACTGTGC---C-------------CTTCTGCCGGCTGCTCAGTG--------------CTGCCC-----C-----CTCCCTGCTCCTCCAGCT-GGCCTTGGTCCCACCTCCTCTCTGGTCTT------------------CCTTTCAGTCCATCCTGTATTTAGGAAGCTTGGTCACCCCTCTAAGTATTCTTGTCCTCTGTTCAAA-ATGGTTCCTCACTGCCTAATAAAACCCAAACTGCCAGA--TGCCTTCCAGT----TCCACAATCTGTCCCGAATGTTA--------------TCTGTTCCCAC----------ATAAATCA-AAGCTTCCATCACTCTCC-CTAAGCCGCCACCTCTTGTTCTGTCTCTGTTGTACCCTCTATCCT-TGACCTAACTCCAGACCTGCACACCCAGTTTCCCTGTACCA-ACTCCACCACCC-AGGGCCT-GCCTAGGCACTGGACGCCACTGGATGTCTTTCCCAGGCT------------------------TCTGTC--------TCA---CTTTGAATTTTC-CCACCTGCCTGAGCCAGCAGCAGCTCTGCAGCATGTCCCACCAGCCAGACTC-TGAGCTTTTGAGGGCCC-ACGGTTGACTGGACTGGTCTTATGCAGGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128283075 627 + 137757926 GTCTCCATCAGACA-CACCCTCAAGTCCAAATAGCTGCTCTGCT-TCCTACATCTTGACTCTCCCAGGGAGACTGGA---------TGCAGTTGCCATCCCCAGC-CTCCCCTTCCTGACTGTGC---C-------------CTTCTGCCGGCTGCTCAGTG--------------CTGCCC-----C-----CTCCCTGCTCCTCCAGCT-GGCCTTGGTCCCACCTCCTCTCTGGTCTT------------------CCTTTCAGTCCATCCTGTATTTAGGAAGCTTGGTCACCCCTCTAAGTATTCTTGTCCTCTGTTCAAA-ATGGTTCCTCACTGCCTAATAAAACCCAAACTGCCAGA--TGCCTTCCAGT----TCCACAATCTGTCCCGAATGTTA--------------TCTGTTCCCAC----------ATAAATCA-AAGCTTCCATCACTCTCC-CTAAGCCGCCACCTCTTGTTCTGTCTCTGTTGTACCCTCTATCCT-TGACCTAACTCCAGACCTGCACACCCAGTTTCCCTGTACCA-ACTCCACCACCC-AGGGCCT-GCCTAGGCACTGGACGCCACTGGATGTCTTTCCCAGGCT------------------------TCTGTC--------TCA---CTTTGAATTTTC-CCACCTGCCTGAGCCAGCAGCAGCTCTGCAGCATGTCCCACCAGCCAGACTC-TGAGCTTTTGAGGGCCC-ACGGTTGACTGGACTGGTCTTATGCAGGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10681567 624 - 16319837 GTCTCCATCAGACA-CACCCTCAAGTCCAAATAGCTGCTCTGCT-TCCTACATCTTGACTCTCCCAGGGAGACTGGA---------TGCAGTCGCCATCCCCAGC-CTCCCCTTCCTGACTGTGC---C-------------CTTCTGCCGGCTGCTCAGTG--------------CTGCCC-----C-----CTCCCTGCTCCTCCAGCT-GGCCTTGGTCCCACCTCCTCTCTGGTCT---------------------TTTCAGTCCATCCTGTATTTAGGAAGCTTGGTCACCCCTCTAAGTATTCTTGTCCTCTGTTCAAA-ATGGTTCCTCACTGCCTAATAAAACCCAAACTGCCAGA--TGCCTTCCAGT----TCCACAATCTGTCCCGAATGTTA--------------TCTGTTCCCAC----------ATAAATCA-AAGCTTCCATCACTCTCC-CTAAGCCGCCACCTCTTGTTCTGTCTCTGTTGTACCCTCTATCCT-TGACCTAACTCCAGACCTGCACACTCAGTTTCCCTGTACCA-ACTCCACCACCC-AGGGCCT-GCCTAGGCACTGGACGCCACTAGATGTCTTTCCCAGGCT------------------------TCTGTC--------TCA---CTTTGAATTTTC-CCACCTGCCTGAGCCAGCAGCAGCTCTGCAGCGTGTCCCACCAGCCAGACTC-TGAGCTTTTGAGGGCCC-ACGGCTGACTGGACTGGTCTTGTGCAGGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12305482 628 + 20526591 GTCTCCATCAGACA-CACCCTCAAGTCCAGAGAGCTGCTCTGCT-TCCTACATCTTGACTCTCCCAGGGAGACTGGA---------TGCAGTCGCCATCCCCAGC-CTCCCCTTCCTGACTGTGC---C-------------CTTCTGCCGGCTGCTCAGTG--------------CTGCCA-----C-----CTCCCTGCTCCTCCAGCC-GGCCTTGGTCCCACCTCCTCTCTGGTCTT------------------CCTTTCAGTCCATCCTGTATTTAGGAAGCTTGGTCACCCCTCTAAGTATTCTTGTCCTCTGTTCAAA-ATGGTTCCTCACTGCCTAATAAAACCCAAACTGCCAGA--TGCCTTCCAGT----TCCACAATCTGTCCCGAATGTTA--------------TCTGCTCCCAC----------ATAAATCA-AAGCTTCCATCACTCTCC-CTAAGCTGCCACCTCTTGTTCTGTCTCTGTTGTACCCTCTATCCT-TGACCTAACTCCAGACCTGCACACCCAGTTTCCCTGTACCA-ACTCCACCACCC-AGGGCCT-GCCTAGGCACTGGACGCCACTGGATGTCTTTCCCAGGCT------------------------TCTGTC--------TCA---CTTTGAATTTTC-CCACCTGCCTGAGCCAGCAGCAGCTCTGCAGCGTGTCCCGCCAGCCAGACTCTTGAGCTTTTGAGGGCCC-ACGGCTGACTGGACTGGTCTTGTGTAGGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119276972 627 + 128539186 GTCTCCATCAGACA-CACCCTCAAGTCCAGAGAGCTGCTCTGCT-TCCTACATCTTGACTCTCCCAGGGAGACTGGA---------TGCAGTCGCCATCCCCAGC-CTCCCCTCCCTGACTGTGC---C-------------CTTCTGCCGGCTGCTCAGTG--------------CTGCCC-----C-----CTCCCTGCTCCTCCAGCC-GGCCTTGGTCCCACCTCCTCTCTGGTCTT------------------CCTTTCAGTCCATCCTGTATTTAGGAAGCTTGGTCACCCCTCTAAGTATTCTTGTCCTCTGTTCAAA-ATGGTTCCTCACTGCCTAATAAAACCCAAACTGCCAGA--TGCCTTCCAGT----TCCACAATCTGTCCCGAATGTTA--------------TCTGCTCCCAC----------ATAAATCA-AAGCTTCCATCACTCTCC-CTAAGCCGCCACCTCTTGTTCTGTCTCTGTTATACCCTCTATCCT-TGACCTAACTCCAGACCTGCACACCCAGTTTCCCTGTACCA-ACTCCACCACCC-AGGGCCT-GCCTAGGCACTGGATGCCACTGGATGTCTTTCCCAGGCT------------------------TCTGTC--------TCC---CTTTGAATTTTC-CCACCTGCCTGAGCCAGCAGCAGCTCTGCAGCGTGTCCCGCCAGCCAGACTC-TGAGCTTTTGAGGGCCC-ACGGCTGACTGGACTGGTCTTGTGCAGGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 628414 623 + 6255621 GTCTCCATCAGACA-CACCCTCAAGTCCAGATAGCTGCTCTGCT-TCCTACATCTTGACTCTCCCAGGGAGACTGGA---------TGCAGTCGCCATCCCCAGC-CTCCCCTTCCTGACTGTGC---C-------------CTTCTGCCGGCTGCTCAGTG--------------CTGCCA-----C-----CTCCCTGCTCCTCCAGCC-GGCCTTGGTCCCACCTCCTCTCTGGTCTT------------------CCTTTCAGTCCATCCTGTATTTAGGAAGCTTGGTCACCCCTCTAAGTATTCTTGTCCTCTGTTCAAA-ATGGTTC----CTGCCTAATAAAACCCAAACTGCCAGA--TGCCTTCCATT----TCCACAATCTGTCCTGAATGTTA--------------TCTGATCCCAC----------ATAAATCA-AAGCTTCCATCACTCTCC-CTAAGCCGCCACCTCTTGTTCTGTCTCTGTTGTACCCTCTATCCT-TGACCTAACTCCAGACCTGTACACCCAGTTTCCCTGTACCA-ACTCCACCACCC-AGGGCCT-GCCTAGGCACTGGACGCCACTGGATGTCTTTCCCAGGCT------------------------TCTGTC--------TCA---CTTTGAATTTTC-CCACCTGCCTGAGCCAGCAGCAGCTCTGCAGCGTGTCCCGCCAGCCAGACTC-TGAGCCTTTGAGGGCCC-ACGGCTGACTGGACTGGTCTTGTGTAGGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4654908 627 - 8658521 GTCTCCATCAGACA-CACCCTCAAGTCCAGAGAGCTGCTCTGCT-TCCTACATCTTGACTCTCCCAGGGAGACTGGA---------TGCAGTTGCCATCCCCAGC-CTCCCCTCCCTGACTGTGC---C-------------CTTCTGCCGGCTGCTCAGTG--------------CTGCCC-----C-----CTCCCTGCTCCTCCAGCC-GGCCTTGGTCCCACCTCCTCTCTGGTGTT------------------CCTTTCAGTCCATCCTGTACTTAGGAAGCTTGGTCACCCCTCTAAGTATTCTTGTCCTCTGTTCAAA-ATGGTTCCTCACTGCCTAATAAAACCCAAACTGCCAGA--TGCCTTCCAGT----TCCTCAATCTGTCCCGAACGTTA--------------TCTGCTCCCAC----------ACAAATCA-AAGCTTCCATCACTCTCC-CTAAGCCGCCACCTCTTGTTCTGTCTCTGTTGTACCCTCTATCCT-TGACCTAACTCCAGACCTGCACACCCAGTTTCCCTGTACCA-ACTCCACCACCC-AGGGCCT-GCCTAGGCACTGGACGCCACTGGATGTCTTTCCCAGGCT------------------------TCTGTC--------TCA---CTTTGAATTTTC-CCACCTGCCTGAGCCAGCAGCAGCTCTGCAGCGTGTCCCGCCAGCCAGACTC-GGAGCTTTTGAGGGCCC-ACGGCTGACTGGACTGGTCTTGTGCAGGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114861400 619 + 124281992 GGGGCTGTGAGACA-CACCCTCAAGTCCAGAGGGCTGCTCTGCT-TCCCGCGTTTTGACTCTCCCAGGAAGACTGGATGGAGACACTGCACTCACCATCCCAGCCTCTCCCCTCCCTGACGGTGC---C-------------TCTCTGCCGGCTGTTCAGTGGACTCGTCCCGTCCCTGGGC-----T-----CTCCCTGCT-CTGCAGCC-GGCCTTGGTCCCACCTCCTCTCTGGTCTT------------------CCTTTCAGTCTATCCTGTATTTAGGAAGCTTGCTCACCCCTCTAAATA---TTCTCCTCCGTTCAAA-ATGGTTCCTCACTGCCTAACAAAATCCAAACTGCCAGA--TGCCTTCCAGT----TCCTCAATCTGTCCTGAACGTTT--------------TCTGCTCCCACAGAAAACATGACAAATCA-AAGCTTCCAT--GTCTCC-CCAAGCCGCCACCTCT-----TGTTTCTACTGTAACCTCCGTCCT-TGACCTAACTCCAGACATGCACACC--ATGTCTCTGTACCC-ACTCCACTGCCC-AGGGCCT-GCCTAGACGCTGGACGCCACCGGACGGCTCTCCCGGGCC------------------------TCTGCC---------------------------CCGCCTGCCTGAGCCAGCAGCAGCTCTGCAGCATGTCCTGCCAGCCAGACTC---AGCCTCTGAAGGCCC-CTG----ACTGGATGGGTTTT-------- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 500572 655 - 9212255 -GGGCCGTGTGACA-CACCCTCAAGTCCAGAGGGCTGCTCTGCT-TCCTGCATTTTGACTCTCCCAAGAAGACGGGATGGAGACATTGCACTCACCATCCCAGCCTCTCCCCTCCCTGACGGTGC---C-------------TCTCTGCCGGCTGTTCTGTGGACTCGTCCCCTCCCTAGGC-----C-----CTCCCTGCT-CTGCAGCT-GGCCTTGGTCCCACCCCCTCTCTGGTCTT------------------CCTTTCAGTCCATCCTGTATTTAGGAAGCTTGGTCGCCCCTCTAAATATTCTTCTCCTCTGTTTAAA-ATGGTTCCTCACTGCCTAACAAAATCCAAACTGCTGGA--TGCTTTCCAGT----TCCTCAGTCTGTCCCGAATGTTC--------------TCTGCTCCCACGGAAAACATGACAAATCA-AAGCTTCCAT--CTCTCC-CTAAGCTACCACCTCTTGTTCTGTTTCTACTGTAACCTCCGTCCT-TGACCTAACTCCAGACGTGCAAACC--ATTTCTCTGTACCC-ACTCCACCACCC-AGGGCCT-GCCTAGACACTGGACGCCACTGGACGGCTTTCCCGGGCC------------------------TCTGTC--------CCA---CCTTGAA-TTTCGCCACCTGCCTGAGCCAGCAGCAGATCTGCAGCACGTCCTGCCAGCCAGACTC-GGAGCTTCTGAAGGCCC-ATGGCTCACTGGACTGGTTTTGTGCTGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2919567 653 + 4466143 GGGGCTGTGAGACA-CACCCTCAAGTCCAGAGGGCTGCTCTGCT-TCCCGCGTTTTGA--CTCCCAGGAAGACTGGATGGAGACACTGCACTCGCCATCCCGGCCTTTCCCCTCCCTGACAGTGC---C-------------TCTCTGCCGGCTGTTCAGTGCATTCGTCCCCTCCCTGGGC-----C-----CTCCCTGCC-CTGCAGCC-GGCCTTGGTCCCACCTCCTCTCTGGTCTT------------------CCTTTCAGTCCATCCTGTATTTAGGAAGCTTGGTCACCCCTCTAAATATTCTTCTCCTCTGTTCAAA-ATGGTTCCTCACTGCCTAATAAAATCCAAACTGCCAGA--TGCCTTCCAGT----TCCTCAATCTGTCCCGAATGTTT--------------TCTGCTCCCACAGAAAACATGACAAATCA-AAGCTTCCAT--CTCTCC-CCAAGCTGCCACATCTTGTTCTGTTTCTACTGTAACCTCCATCCT-TGACCTAACTCCAGACATGCACGCC--ATTTCTCTGTACCC-ACTCCACCACCC-AGGGCCT-GCCTAGACACTGGATGCC-CCAGACGGCTTTCCTGGGCC------------------------TCTGTC--------CCG---CCTTGAATTTTCCCCACCTGCCTGAGCCAGCAGCAGTTCTGCAGCACGTCCAG-CAGCCAGACTC-TGAGCTTCTGAAGGCCC-ATGGCTGACTGGACTGGTTTTGTGCTGGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1622495 657 + 5364348 GGGGCTGTGAGACA-CACCCTCAAGTCCAGAGGGCTGCTCTGCT-TCCCGCGTTTTGACTCTCCCGGGAAGACTGGATGGAGACACTGCACCCGCCATCCCAGCCTCTCCCCTCCCTGAAGGTTT---C-------------TCTCTGCCGGCTGCTCAGTGGACTCGTCCCCTCCCTGGGC-----C-----CTCCCTGCT-CTGCAGCC-GGCCTTGGTCCCACCTCCTCTCTGGTCTT------------------CCTTTCAGTCCATCCTGTATTTAGGAAGCTTGGTCACCCCTCTAAATATTCTTCTCCTCTGTTCAAA-ATGGTTCCTCACTGCCTAATAAAATCCAAACTGCCGGA--TGCCTTCCAGT----TCCTCAATCTGTCCCGAATGTTT--------------TCTGCTCCCACAGAAAACATGACAAATCA-AAGCTTCCAT--CTCTCC-CCAAGCCACCACCTCTTGTTCTGTTTCTACTGTAACCTCCATCCC-TGACCTAACTCCAGATGTGCACACC--ATTTCTCTGTATCC-ACTCCACCACCC-AGGGCCT-GCCTAGACACTGGATGCCACTAGACGGCTTTCCTGGGCC------------------------TCTGTC--------CCG---CCTTGAATTTTCCCCACCTGCCTGAGCGAGCAGCAGCTCTGCAGCATGTCCTGCCAGCCAGACTC-TGAGCTTCTGAAGGCCC-ATGGCTGACTGGACTGGTTTTGTGCTGAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4344553 645 + 7922563 ------------TG-GTCCTTCAAATGTAAATAGATGTTCCACT-TCCCACATTGCTATCTTCCTAGCTAGACTGAACCGAGACATTCCATAGGCTACTTATGGCCCTTCCCTCCCCAGCTCTGC---TCATGCCCCCATGGCCTGTGTCAGCT-CTTGGCAGACTTAT-------CTAGCT-----CTTCTGCTCCCTGCTCCTGCTCCCTAGCCTTGCTCTGGCCC---CTCTGGTCA---------------------CTCAAATCCATCTAGCATTTAGGAAGCTTGGTCACCCT--------TTCTACTCTGCTGTTCAAACATGGCTCCTCATTACCTGATAAAATCTGAACTGCTAAA--CAGCCTTCATT----TCCTTAG--TGTCCC-AGTGTTA--------------CCTGCTCCCAC-------------CAGCA-GCCCTGCCATCCACCTTG-C----------CCTCTTATTATTTCTTTATCATAACTTCTGTCCTCTGAGCAAACTTCAGACCTGTGTCC---ATCCCCTTGAGCAA-AACTCACTGCCTGAGGCCCC-GCCCATGTTCTGGCCTGAGCTGGCCGACTTTCCTGAGCCTCTGCTGTCTTC--AGAGCC----TCTGTCTCTTTGAGTCC---CCTAGCATTTCC-CCACTGGCCTGAGCTGGCAGC--TTTTGTAACATGTTCTATCATCCAGACAC-ATAGCTTCTCAAGGCCCTATGGCGGATTGTACTTGTTTTGTGCAGGG i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 882750 703 - 1116856 TGCTCCATCAGACATTCCCCTCAAGTTTGAGTATC--ATCTGCTCTTCCACATTGTTACGTCCCCAGCTGGACTGAACCTAGAGCTGCCACGAGCCAACCCTGGC-CCTGCCTCCCTTACTGTACGTGC-------------TCTCTGT--GTTGCCGAGTC--------------CTCCCCGCAGAC-----TTCCCTGTCAGGCTGAGT-GGTCT---ACGCAGCTTCTCTCTGGTCTTCCTGTCTCCAAAGTGGTCCCTTTCGATCCACCCTGTATTTAGGAAGATTGGGCATCCCTCTAAATATTTTATTCCCCTGTTCAAAAATGGCTCCTCGTTGCCTAATAAAACCCAAATGGCCAGACTCTCCTTCCAATGTCCTCCTTAGTCTGTCCCTAGTGTTATGGCTTTTTCTTTTTCTGCATCCAC----------ATAAACCCTAAGCTTCCACCATTCCCCATCAAGCCTCCTGCTTTTGGCCTTTCTTTACTGCAACCTCCATCCT-TGGCCCAACTCCAGGCCTAGGTGTCCAGTCTCCTTGTATCACACCCCACACCTC-AGGGCCCAGCCCCAGGACCACACTGTACTGGGTGTCTTCCCTGACCTGCTGCTGCCTTCCTAGGACCTTGGTCTGTT--------TTCATTCCTGGCATTTTCCCCATCCGCCTGAGCCAACAGC--TTCTGTGACATGT--TGTCTACCAGA--C---AGCTTCTCAAGGCCCTACAGGCAAGGTGACTTGTTTTGTGCACAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9504390 1293 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I e proCoq1.NW_012154285v1 6758174 892 - 9870158 I e canFam3.chr26 33192457 193 - 38964690 I a score=184358.000000 s hg38.chr12_KI270834v1_alt 112924 30 + 119498 -CACTTGCATGTTACAAGCTCGCTGCAGGTG s panTro5.chr12 127398519 30 + 137163284 -CACTTGCATGTTACAAGCTCGCTGCAGGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125748822 30 + 135337776 -CACTTGCATGTTACAAGCTCGCTGCAGGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8262405 30 - 8369578 -CACTTGCATGTTACAAGCTCGCTGCAGGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97920449 30 + 106955855 -CACTTGCATGTTACAAGCTCACTGCAGGTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124035511 30 + 133663169 -CACTTGCATGGTACAAGCTCACTGCAGGTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128283702 30 + 137757926 -CACTTGCATGGTACAAGCTCACTGCAGGTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10682191 30 - 16319837 -CACTTGCATGGTACAAGCTCACTGCAGGTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12306110 30 + 20526591 -CACTTGCATGTTACAAGCTCACTGCAGGTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119277599 30 + 128539186 -CACTTGCAAGTTACAAGCTCACTGCAGGTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 629037 30 + 6255621 -CACTTGCATGTTACAAGCTCACTGCAGGTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4655535 30 - 8658521 -CACTTGCATGTTACAAGCTCACTGCAGGTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114862019 3 + 124281992 ----------------------------GTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 501227 11 - 9212255 -CA-------------------CTGCAGGTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2920220 11 + 4466143 -CA-------------------CTGCAGGTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1623152 11 + 5364348 -CA-------------------CTGCAGGTG i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 883453 31 - 1116856 TGCCTTGCACATTATAAGCTGATGGCAGGTG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9504390 1293 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I e proCoq1.NW_012154285v1 6758174 892 - 9870158 I e canFam3.chr26 33192457 193 - 38964690 I e otoGar3.GL873618 4345198 0 + 7922563 C a score=1855093.000000 s hg38.chr12_KI270834v1_alt 112954 197 + 119498 ATGGGCgctcctcgacttagcatggggtcatgtcccgaaaaatccaatg-taagttgaaaataccg-taagtcaaaagtgtgttttcgatattttcagcttaccatgggtttatctggacatatccatggt---aagtcgaggagTGtactgaatgggtattgccccatgcagttgaaaaattttaagttgaaccattgcaa s panTro5.chr12 127398549 197 + 137163284 ATGGGCgctcctcgacttagcatggggtcatgtcccgaaaaatccaatg-taagttgaaaataccg-taagtcaaaagtgtgttttcgatattttcagcttaccatgggtttatctggacatatccgtggt---aagtcgaggagTGtactgaatgggtattgccccatgcagttgaaaaattttaagttgaaccattgcaa i panTro5.chr12 C 0 C 0 s panPan2.chr12 125748852 197 + 135337776 ATGGGCgctcctcgacttagcatggggtcatgtcccgaaaaatccaatg-taagttgaaaataccg-taagtcaaaagtgtgttttcgatattttcagcttaccatgggtttatctggacatatccgtggt---aagtcgaggagTGtactgaatgggtattgccccatgcagttgaaaaattttaagttgaaccattgcaa i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8262435 197 - 8369578 ATGggtgctcctcgacttagcatggggtcatgtcccgaaaaatccaata-taagttgaaaataccg-taagtcaaaagtgtgttttcgatattttcagcttaccatgggtttatctggacatatccgtggt---aagtcgaggagTGtactgaatgggtattgccccatgcagttgaaaaattttaagttgaaccattgcaa i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97920479 196 + 106955855 ATGGGCgctcctcgacttagcatggggtcatgtcccgaaaaatccaatg-taagttgaaaataccg-taagtcaaaagtgtgttttcgatattttcagcttaccatgggtttatctggacatatccgtggt---gagtcgaggagTGTAC-GAATGGGTATTGCCCCATGCAGTTGAAAAACTTTAAGTTGAACCATTGCAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124035541 198 + 133663169 ATGTGCgctcctcgacttagcatggggtcacgtcccaaaaaatccaatg-taagttgaaaataccgttaagtcaaaagtgtgtttTTgatattttcagcttaccatgggtttatctggacatatccgtggt---aagtcgaagaatgtactgaatgtgtattgccccatgcagttgaaaaattttaagttgaaccactgcaa i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128283732 198 + 137757926 ATGTGCgctcctcgacttagcatggggtcacgtcccaaaaaatccaatg-taagttgaaaataccgttaagtcaaaagtgtgtttTTgatattttcagcttaccatgggtttatctggacatatccgtggt---aagtcgaagaatgtactgaatgtgtattgccccatgcagttgaaaaattttaagttgaaccactgcaa i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10682221 198 - 16319837 ATGTGCgctcctcgacttagcatggggtcacgtcccaaaaaatccaatg-taagttgaaaataccgttaagtcaaaagtgtgtttTTgatattttcagcttaccatgggtttatctggacatatccgtagt---aagtcgaagaATGTACTGAATGTGTATTGCCCCACGCAGCTGAAAAATTTTAAGTTGAACCACTGCAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12306140 183 + 20526591 ATGTGCGCTCCTCG---------------AGgtcccaaaaaatccaatg-taagttgaaaataccattaagtcaaaagtgtgtttTTgatattttcagcttaccatgggtttatttggacatatccgtggt---aagtcgaggaATGTACTGAATGTGTATTGCCCCATGCAGTTGAAAAATTTTAAGTTGAACCACTGCAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119277629 198 + 128539186 ATGTGCgctcctcgacttagcatgcggtcatgtcccaaaaaatccaatg-taagttgaaaataccattaagtcaaaagtgtgtttttgatattttcagcttaccatgggtttatctggacatatccgtggt---aagtcgaggagTGtactgaatgtgtattgccccatgcagttgaaaaattttaagttgaaccattgcaa i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 629067 183 + 6255621 ATGTGCGCTCCTCG---------------AGgtcccaaaaaatccaatg-taagttgaaaataccattaagtcaaaagtgtgtttTTgatattttcagcttaccatgggtttatttggacatatccgtggt---aagtcgaggaATGtactgaatgtgtattgccccatgcagttgaaaaattttaagttgaaccattgcaa i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4655565 198 - 8658521 ATGTGCgctcctcgacttagcatggggtcacgtcccgaaaaatctaatg-taagctgaaaataccgttaagtcaaaagtgtgtttttgatattttcagcttaccatgggtttctctggacatatccgtggt---aaatcaaggagTGTACTGAATGTGTATTGCCCCATGCAGTTGAAAAATTTTAAGTTGAACCATTGCGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114862022 198 + 124281992 ATGGGCAAtcctcgacttagcaagaggtcatgtcccgaaaaatccaatg-taagttgaaaataccattaagtcaaatgcgtGTTTTTGGTATTTTCAGCTTCCCGTGGGTTTATATGGACATATCTGTGGT---AGGTCAGGGAGTGGACTCCATGCGCAATGCCCCATGTAGTTGAAAAATTTTAATTTGAACCATTGTAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 501238 187 - 9212255 ATGGGCgctcctcgacttagcatggggtcatgtcccgaaaaatccaatg-taagtggaaaataccg-taagtcaaaagtgtgtttTTGTTATTTTCAGCTTACTGTGGGTT----------TATCCGTGGT---AAGTCGAGGAGTGGACTCAGTGTGTATTGCCCCATGTAGGTGAAAAATTTTAAGCTGAACCATTGCAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2920231 190 + 4466143 ATGGGCgctcctcgacttaggatggggtcatgtcccaaaaaatccaatg-taagttgaaactatcg-taagtcaaaagtgtgtttTTGTTATTTTCGGCTTACCGTGCGTTTATCTGGACATA-------T---AAGTCGAGGAGTGGACTCAATGCGTATTGCCCCATGTAGTTGAAAGATTTTAAGTTGAACCATTGCAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1623163 201 + 5364348 ATGGGCgctccttgacttagcatgggatcatgtcccgaaaaatccaatgttaagttgaaaataccg-taagtcaaaagtgtgtttTTggtattttcagcttactgtgggtttatctggacatatccgtggtaaaaagtcgaggagtggactcaatgcgtattgccccatgtagttgaaaaattttaagttgaaccattgcaa i aotNan1.NW_018491581v1 C 0 C 0 e micMur3.chr21 9504390 1293 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I e proCoq1.NW_012154285v1 6758174 892 - 9870158 I e dasNov3.JH568189 883484 0 - 1116856 C e canFam3.chr26 33192457 193 - 38964690 I e otoGar3.GL873618 4345198 0 + 7922563 C a score=138992.000000 s hg38.chr12_KI270834v1_alt 113151 22 + 119498 -gtTTCTAGTTTTAAAAACCATG s panTro5.chr12 127398746 22 + 137163284 -gtTTCTAGTTTTAAAAACCATG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125749049 22 + 135337776 -gtTTCTAGTTTTAAAAACCATG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8262632 22 - 8369578 -gtTTCTAGTTTTAAAAACCAtg i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97920675 22 + 106955855 -GTTTCTGTTTTTAAAAACCACG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124035739 22 + 133663169 -gtTTCTCTTTTTAAAAAACATG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128283930 22 + 137757926 -gtTTCTCTTTTTAAAAAACATG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10682419 22 - 16319837 -GTTTCTCTTTTTAAAAAACATG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12306323 22 + 20526591 -GTTTCTCTTTTTAAGAAACATG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119277827 22 + 128539186 -gtTTTTCTTTTTAAAAAACATG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 629250 22 + 6255621 -gtTTCTCTTTTTAAGAAACATG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4655763 20 - 8658521 -GTTTCTCTTTTTAAAAAACA-- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114862220 22 + 124281992 -GTTTGTATTTTTAGAAAACGTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 501425 21 - 9212255 -GTTTGTA-TTTTATAAAACGTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2920421 19 + 4466143 -GTTTGTA-TTTTATAAAAC--G i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1623364 21 + 5364348 -gtcTGTA-TTTTATAAAACGTG i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 883484 17 - 1116856 GATTATTGTTTTTAAAA------ i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9504390 1293 - 31815103 I e mm10.chr5 124836525 543 + 151834684 I e proCoq1.NW_012154285v1 6758174 892 - 9870158 I e canFam3.chr26 33192457 193 - 38964690 I e otoGar3.GL873618 4345198 0 + 7922563 C a score=178344.000000 s hg38.chr12_KI270834v1_alt 113173 24 + 119498 TGTCTGTGTGTGTATGTGCAGGTA s panTro5.chr12 127398768 24 + 137163284 TGTCTGTGTGTGTATGTGCAGGTA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125749071 24 + 135337776 TGTCTGTGTGTGTATGTGCAGGTA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8262654 24 - 8369578 tgtgtgtgtgtgtatgtgCAGGTA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97920697 24 + 106955855 TGTCTGTGTGTGTATGTGCAGGTA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124035761 24 + 133663169 TGTCTGTGTGTATATATGCAGGTA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128283952 24 + 137757926 TGTCTGTGTGTATATATGCAGGTA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10682441 24 - 16319837 TGTCTGTGTGTATATATGCAGGTA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12306345 24 + 20526591 TGTCTGTGTGTATATATGCAGGTA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119277849 24 + 128539186 TGTCTGTGTGTATATATGCAGGTA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 629272 24 + 6255621 TGTCTGTGTGTATATATGCAGGTA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4655783 24 - 8658521 CGTCTGTGTGTATATATGCAGGTA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114862242 21 + 124281992 TCCCTGTGTGTTTAT---CATGTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 501446 21 - 9212255 TCCATGTGTGTATAT---CATGTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2920440 21 + 4466143 TCCATGTGAGTATAT---CATGTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1623385 21 + 5364348 TCCATGGGTGTATAT---CATGTG i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124837068 24 + 151834684 TGTGTGTGTGTGCTTGTGAAGACA i mm10.chr5 I 543 C 0 s dasNov3.JH568189 883501 14 - 1116856 ------TGTGTACATGTGTG---- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9504390 1293 - 31815103 I e proCoq1.NW_012154285v1 6758174 892 - 9870158 I e canFam3.chr26 33192457 193 - 38964690 I e otoGar3.GL873618 4345198 0 + 7922563 C a score=304591.000000 s hg38.chr12_KI270834v1_alt 113197 23 + 119498 TAATG--TCAGCAAATGACCTCCCT s panTro5.chr12 127398792 23 + 137163284 TAATG--TCAGCAAATGACCTCCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125749095 23 + 135337776 TAATG--TCAGCAAATGACCTCCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8262678 23 - 8369578 TAATG--TCAGCAAATGACCTCCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97920721 23 + 106955855 TAATG--TCAGCAAATGACCTAGCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124035785 23 + 133663169 TAATG--TCAGCAAATGACCTCCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128283976 23 + 137757926 TAATG--TCAGCAAATGACCTCCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10682465 23 - 16319837 TAATG--TCAGCAAATGACCTCCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12306369 23 + 20526591 TAATG--TCAGCAAATGACCTCCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119277873 23 + 128539186 TAATG--TCAGCAAATGACCTCCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 629296 23 + 6255621 TAGTG--TCAGCAAATGACCTCCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4655807 4 - 8658521 TAAT--------------------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114862263 23 + 124281992 TAATG--TCAGCAAATGACCTCCCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 501467 23 - 9212255 TAATG--TCAGCAAATGACCTCCCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2920461 23 + 4466143 TAATG--TCAGCAAATGACCTCCCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1623406 23 + 5364348 TAATG--TCAGCAAATGACCTCCCT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9505683 23 - 31815103 TAATG--TCAGCAAATGACCTCCCT i micMur3.chr21 I 1293 I 753 s proCoq1.NW_012154285v1 6759066 23 - 9870158 TAATG--TCGGCAAATGACCTCCCT i proCoq1.NW_012154285v1 I 892 C 0 s mm10.chr5 124837092 25 + 151834684 GACTGAATCAGCAAATGGTAGCACT i mm10.chr5 C 0 C 0 s dasNov3.JH568189 883515 23 - 1116856 TAATG--TCAGTAAATGACCACCCT i dasNov3.JH568189 C 0 C 0 e canFam3.chr26 33192457 193 - 38964690 I e otoGar3.GL873618 4345198 0 + 7922563 C a score=129194.000000 s hg38.chr12_KI270834v1_alt 113220 10 + 119498 AAAAAGGATG s panTro5.chr12 127398815 10 + 137163284 AAAAAGGATG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125749118 10 + 135337776 AAAAAGGATG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8262701 10 - 8369578 AAAAAGGATG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97920744 10 + 106955855 AAAAAGGATG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124035808 10 + 133663169 AAAAAGGATG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128283999 10 + 137757926 AAAAAGGATG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10682488 10 - 16319837 AAAAAGGATG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12306392 10 + 20526591 AAAAAGGATG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119277896 10 + 128539186 AAAAAGGATG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 629319 10 + 6255621 AAAAAGGATG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4655811 4 - 8658521 ------GATG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114862286 10 + 124281992 AAAAAGGATA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 501490 10 - 9212255 AAAAAGGATG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2920484 10 + 4466143 AAGAAGGATG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1623429 10 + 5364348 AAAAAGGACG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6759089 10 - 9870158 GGAAAGGATG i proCoq1.NW_012154285v1 C 0 I 1024 s mm10.chr5 124837117 10 + 151834684 AGAAATGATG i mm10.chr5 C 0 C 0 s dasNov3.JH568189 883538 10 - 1116856 AGAAAGGATG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9505706 753 - 31815103 I e canFam3.chr26 33192457 193 - 38964690 I e otoGar3.GL873618 4345198 0 + 7922563 C a score=925337.000000 s hg38.chr12_KI270834v1_alt 113230 87 + 119498 CATGCAGTACTACCTTTCATGAGGTTTC------TTCTTTTGCCAAAAGG----AAAATAGATCCTAAAAC----ACAGT------TTcagaggtagagagagggac s panTro5.chr12 127398825 87 + 137163284 CATGCAGTACTACCTTTCATGAGGTTTC------TTCTTTTGCCAAAAGG----AAAATAGATCCTAAAAC----ACAGT------TTcagaggtagagagagggac i panTro5.chr12 C 0 C 0 s panPan2.chr12 125749128 87 + 135337776 CATGCAGTACTACCTTTCATGAGGTTTC------TTCTTTTGCCAAAAGG----AAAATAGATCCTAAAAC----ACAGT------TTcagaggtagagacagggac i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8262711 87 - 8369578 CATGCAGTACTACCTTTCATGAGGTTTC------TTTTTTTGCCAAAAGG----AAAATAGATCCTAAAGC----ACAGT------TTCAGAGGTAGAGAGAGGTAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97920754 87 + 106955855 CATGCAGTACTACCTTTCATGAGGTTTC------TTTTTTTGCCAAAAGG----AAAATGGATCCTAAAAC----ACGGT------TTCAGAGGTAAAGAGAGGGAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124035818 87 + 133663169 CATGCAGTACTACCTTTCATGAGGTTTA------TTTTTTTGCCAAAAGG----AAAATGGATCCTGAAAC----ACAGT------TTCAGAGGTAAAGAGAGGGAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128284009 87 + 137757926 CATGCAGTACTACCTGTCATGAGGTTTA------TTTTTTTGCCAAAAGG----AAAATGGATCCTGAAAC----ACAGT------TTCAGAGGTAAAGAGAGGGAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10682498 87 - 16319837 CATGCAGCACTACCTTTCATGAGGTTTA------TTTTTTTGCCAAAAGG----AAAATGGATCCTGAAAC----ACAGT------TTCAGAGGTAAAGAGAGGGAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12306402 87 + 20526591 CATGCAGTACTACCTTTCATGAGGTTTA------TTTTTTTGCCAAAAGG----AAAATGGATCCTGAAAC----ACAGT------TTCAGAGGTAAAGAGAGGGAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119277906 87 + 128539186 CATGCAGTACTACCTTTCATGAGGTTTA------TTTTTTTGCCAAAAGG----AAAATGGATCCTGAAAC----ACAGT------TTCAGAGGTAAAGAGAGGGAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 629329 87 + 6255621 CATGCAGTACTACCTTTCATGAGGTTTA------TTTTTTTGCCAAAAGG----AAAATGGATCCTGAAAC----ACAGT------TTCAGAGGTAAAGAGAGGGAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4655815 87 - 8658521 CATGCAGTATTACCTTTCATGAGGTTTA------TTTTTTTGCCAAAAGG----AAAATGGATCCTGAAAC----ACAGT------TTCAGAGGTAAAGAGAGGGAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114862296 86 + 124281992 CATGCAATACTACCTTTCATGAGGTCTC-------TTTTTGGCCTAAAGG----AAAATGGATCCTGAAAC----ACAGT------TTCAGAGGTAAAGAGGGAGAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 501500 90 - 9212255 CATGCAATACTACCTTTCATGAGGTCTC---TTTTTTTTTGGCCAAAAGG----AAAATAGATCCTGAAAC----ACAGT------TTCAGAGGTAAAGATGGGGGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2920494 87 + 4466143 CATGCAATACTACCTTTCATGAGGTCTC------TTTTTTTGCCAAAAGG----AAAATGGATCCTGAAAC----ATAGT------TTCAGAGGTAAAGAGGGGGAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1623439 88 + 5364348 CATGCAATACTACCTTTCATGAGGTCTC-----TTTTTTTTGCCAAAAGG----AAAATGGATCCTGAAAC----ACAGT------TTCAGAGGTAAAGAGGGGGAC i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124837127 91 + 151834684 ----CAGTATTATCTTGTATGAGTCTTG------TGCTTTTAGCAAAAAC----AAAAC--ATCAAAAAACCTCTACAGCATTAGATTCTGAAGTACAGTGTGGAAC i mm10.chr5 C 0 I 173 s dasNov3.JH568189 883548 94 - 1116856 CAGGCAAAGCTA---TTTCCAAGGTTTTGGGGGTTTTTTTGGCCACAAAGACCAACAATGGATTCTGAACT----ACAGC------TCCATGGTAAGTGACAGGCTC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9505706 753 - 31815103 I e proCoq1.NW_012154285v1 6759099 1024 - 9870158 I e canFam3.chr26 33192457 193 - 38964690 I e otoGar3.GL873618 4345198 0 + 7922563 C a score=3805699.000000 s hg38.chr12_KI270834v1_alt 113317 383 + 119498 agagacacacacaC--GACTC-TGTAGACA-CTGTAAGACCCAGGAGCCCAGCCACCTGGGCTGAACCCCTGCAACCTGAAATGCTGACCTG-GGCACGGCATTGGGCCT--GGTACCCGCTGTCCTTCCCCCAGGGCCTGTGGGACAACAACCCATGCCTGTCGCAGGGCCTTTGCTTTCAGCCCACACTCGGGTGGACAGTGGGCCTTGGGCTCCTTCCGAGGAAGGGCTGCAACCTCAGACCTTCAACCACATCCCTGGCCTGCTGTGAGCATCCTGGGATTTTTC-TTCCCCCAGGCAGTGCTGCAAAAGGCTGATGGACGTTTGGAACATTCAGGAACAAGGCTGTCCCTGGGCTTTGCTCATGTCCTGTGAGGGGCAGC-------------CCACAA s panTro5.chr12 127398912 383 + 137163284 agagacacacacaC--GACTC-TGTAGACA-CTGTAAGACCCAGGAGCCCAGCCACCTGGGCTGAACCCATGCAACCTGAAATGCTGACCTG-GGCACGGCATTGGGCCT--GGTACCCGCTGTCCTTCCCCCAGGGCCTGTGGGACAACAACCCATGCCGGTCGCAGGGCCTTTGCTTTCAGCCCACACTCGGGTGGACAGTGGGCCTTGGGCTCCTTCCGAGGAAGGGCTGCAACCTCAGACCTTCAACCACATCCCTGGCCTGCTGTGAGCATCCTGGGATTTTTC-TTCCCCCAGGCAGTGCTGCAAAAGGCTGATGGACGTTTGAAACATTCAGGAACAAGGCTGTCCCCGGGCTTTGCTCATGTCCTGTGAGGGGTAGC-------------CCACAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125749215 383 + 135337776 agagacacacacaC--GACTC-TGTAGACA-CTGTAAGACCCAGGAGCCCAGCCACCTGGGCTGAACCCATGCAACCTGAAATGCTGACCTG-GGCACGGCATTGGGCCT--GGTACCCGCTGTCCTTCCCCCAGGGCCTGTGGGACAACAACCCATGCCGGTCGCAGGGCCTTTGCTTTCAGCCCACACTCGGGTGGACAGTGGGCCTTGGGCTCCTTCCGAGGAAGGGCTGCAACCTCAGACCTTCAACCACATCCCTGGCCTGCTGTGAGCATCCTGGGATTTTTC-TTCCCCCAGGCAGTGCTGCAAAAGGCTGATGGACATTTGGAACATTCAGGAACAAGGCTGTCCCCGGGCTTTGCTCATGTCCTGTGAGGGGTAGC-------------CCACAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8262798 383 - 8369578 AGAGACACACACAC--GACTC-TGTAGACA-CTGTAAGACCCAGGAGCCCAGCCACCTGGGCTGAACCCCTGCAACCTGAAATGCTGACCTG-GGCACAGCATTGGGCCT--GGTACCCGCTGTCCTTCCCCCAGGGCCTGTGGGACAACAACCCATGCCTGTCGCAGGGCCTTTGCTTTCAGCCCACACTCGGGTGGACAGTGGGCCTTGGGCTCCTTCCGAGGAAGGGCTGCAACCTCAGACCTTCAACCACATCCCTGGCCTGCTGTGACCATCCTGGGATTTTTC-TTCCCCCAGGCAGTGCTGCAAAAGGCTGATGGACGTTTGGAACATTCAGGAACAAGGCTGTCCCTGGGCTTTGCTCATGTCCTGTGAGGGGCAGC-------------CCACAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97920841 384 + 106955855 AGAGACACACACACATGACTC-TGTGGACA-CTGTAAGACCCAGGAGCCCAGCCACCCGGGCTGAACCCCTGCAACCT-AAATGCTGACCTG-GGCAGGGCATTGGGCCT--GGTACCCACTATCCTTCCCCCAGGGCCTGTGGGACAATAACCCATGCCTGTCGCAGGGCCTTTGCTTTCAGCCCACACTCGGGTGGACAGTGGGCCTTGGGCTCCTTCCGAGGAAGGGATGCAACCTCAGACCTTCAACCACATCCCTGGCCTGCTGTGACCATCCTGGGATTTTTC-TTCCCCCAGGCAGTGCTGCAAAAGGCTGACGGACGTTTGGAACATTCAGGAACAAGGCTGTCCCTGGGCTTTGCTCATGTCCTATGAGGGGCAGC-------------CCACAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124035905 384 + 133663169 AGAGACACACACATGTGACTC-TATAGACA-CTGTAAGACCCAGGAGCCCAGCCACCTGGGCTGAACCCCTGCAACCTGAAATGCTGACCTG-GGCATGGCACTGGGCCT--GGTACCCACTGTCCTTCCCCCAGGGCCTGTGGGACAACAACCCATGCCTGTCGCAAGGCCTTTGCTTTCAGCCCACACGTGGCTGGACAGTGGGCCTTGGGCTCCTTCTGAGGAAGGGCTGCAACCTCAGGCCTTCAACCACATCCCTGGCCTGCTGTGACCATCCTGGGA-TTTTC-TTCCCCCAGACAGTGCTGCAAAAGGTTGATGGATGTTTGGAACATTCAGGAACAAGGCTCTCCCTGGGCTTCTCTCATGTCCTATGAGGGGCAGC-------------CCACAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128284096 384 + 137757926 AGAGACACACACATATGACTC-TATAGACA-CTGTAAGACCCAGGAGCCCAGCCACCTGGGCTGAACCCCTGCAACCTGAAATGCTGACCTG-GGCATGGCACTGGGCCT--GGTACCCACTGTCCTTCCCCCAGGGCCTGTGGGACAACAACCCATGCCTGTCGCAAGGCCTTTGCTTTCAGCCCACACGTGGCTGGACAGTGGGCCTTGGGCTCCTTCTGAGGAAGGGCTGCAACCTCAGGCCTTCAACCACATCCCTGGCCTGCTGTGACCATCCTGGGA-TTTTC-TTCCCCCAGACAGTGCTGCAAAAGGTTGATGGATGTTTGGAACATTCAGGAACAAGGCTCTCCCTGGGCTTCTCTCATGTCCTATGAGGGGCAGC-------------CCACAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10682585 384 - 16319837 AGAGACACACACATATGACTC-TATAGACA-CTGTAAGACCCAGGAGCCCAGCCACCTGGGCTGAACCCCTGCAACCTGAAATGCTGACCTG-GGCATGGCACTGGGCCT--GGTACCCACTGTCCTTCCCCCAGGGCCTGTGGGACAACAACCCATGCCCGTCGCAAGGCCTTTGCTTTCAGCCCACACGTGGCTGGACAGTGGGCCTTGGGCGCCTTCTGAGGAAGGGCTGCAACCTCAGGCCTTCAACCACATCCCTGGCCTGCTGTGACCATCCTGGGA-TTTTC-TTCCCCCAGACAGTGCTGCAAAAGGTTGATGGACATTTGGAACATTCAGGAACAAGGCTCTCCCTGGGCTTCTCTCATGTCCTATGAGGGGCAGC-------------CCACAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12306489 381 + 20526591 GGAGACACACACATATGACTC-TATAGACA-CTGTAAGACCCAGGAGCCCAGACACCTGGGCTGAACCCCTGCAACCTGAAATGCTGACCTG-GGCATGGCGCTGGGCCT--GGTACCCACTGTCCTTCCCCCAGGGCCTGTGGGACAACAACCCATGCCTGTCGCAAGGCCTTTGCTTTCAGCCCACACGTGGCTGGACAGTGGGCCTTGGGCTCCTTCTGAGGAAGGGCTGCAACCTCAGGCCTTCAACCACATCCCTGGCCTGCTGTGACCATCCTGGGA-TTTTC-TTTCCCCAGACAGTGCTGCAAAAGGTTGATGGACGTTTGGAACATTCAG---CAAGGCTCTCCCTGGGCTTCTCTCATGTCCTATGAGGGGCAGC-------------CCACAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119277993 384 + 128539186 AGAGACACACACATATGACTC-TATAGACA-CTGTAAGACCCAGGAGCCCAGCCACCTGGGCTGAACCCCTGCAACCTGAAATGCTGACCTG-GGCATGGCACTGGGCCT--GGTACCCACTGTCCTTCCCCCAGGGCCTGTGGGACAACAACCCATGCCTGTCGCAAGGCCTTTGCTTTCAGCCCACACGTGGCTGGACAGTGGGCCTTGGGCTCCTTCTGAGGAAGGGCTGCAACCTCAGGCCTTCAACCACATCCCTGGCCTGCTGTGACCATCCTGGGA-TTTTC-TTCCCCCAGACAGTGCTGCAAACGGTTGATGGACGTTTGGAACATTCAGGAACAAGGCTCTCCCTGGGCTTCTCTCATGTCCTATGAAGGGCAGC-------------CCACAA i chlSab2.chr11 C 0 I 255 s manLeu1.NW_012103587v1 629416 385 + 6255621 AGAGACACACACATATGACTC-TATAGACA-CTGTAAGACCCAGGAGCCCAGCCACCTGGGCTGAACCCCTGCAACCTGAAATGCTGACCTG-GGCATGGCAATGGGCCT--GGTACCCACTGTCCTTCCCCCAGGGCCTGTGGGACAACAACCTATGCCTGTCGCAAGGCCTTTGCTTTCAGCCCACACGTGGCTGGACAGTGGGCCTTGGGCTCCTTCTGAGGAAGGGCTGCAACCTCAGGCCTTCAACCACATCCCTGGCCTGCTGTAACCATCCTGGGA-TTTTCTTTCCCCCAGACAGTGCTGCAAAAGGTTGATGGACGTTTGGAACATTCAGGAACAAGGCTCTCCCTAGGCTTCTCTCATGTCCTATGAGGGGCAGC-------------CCACAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4655902 384 - 8658521 AGACACACACACATATGACTC-TATAGACA-CTGTAAGACCCAGGAGCCCAGCTACCTGGGCTGAACCCCTGCAACCTGAAATGCTGACCTG-GGCATGGCACTGGGCCT--GGTACCCATTGTCCTTCCCCCAGGGCCTGTGGGACAACAACCCATGCCTGTCGCAAGGCCTTTGCTTTCAGCCCACACTTGGTTGGACAGTGGGCCTTGGGCTCCTTCTGAGGAAGGGCTGCAACCTCAGGCCTTCAACCACATCCCTGGCCTGCTGTGACCATCCTGGGA-TTTTC-TTCCCCCAGACAGTGCTGCAAAAGGTTGATGGACATTTGGAACATTCAGGAACAAGGCTCTCCCTGGGCTTCTCTCATGTCCTGTGAGAGGCAGC-------------CCACAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114862382 371 + 124281992 AGACACCG--------------------------TAAGACCCAGGAGCCTGGCCACCTGGGCTGAACCCCTGCAACCTGAAATGCTGACCTG-GGCCCAGCATTGGGCCT--GGAACCCACTGTCCTTCCCCCAGGGCCTGTGGGACAACTACCCATGCCTGTCGTAGGGCCTTTGCTTTCAGCCCACACTCAGGTGGAGAGTGGGCCTTAGCCTCCTTCCGAGGAAAGACTGCAACC-CAGACCTTCAACCGCATCCCTGGCCTG-TGTGAATATCCTGGGA-TTTTC-TTCTCCCAGGCAGTGCTGCAAAGGGCTGACAGATGTTTGGAACCTTCAGGACCAAGGCTGTCCCTGGGCTTTGCTCATGTCCTATGAGGGGCAGCTGACAGGGGCAGGCCACAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 501590 390 - 9212255 AGACACCGAAACATATGAGTC-TATAGACA-CCATAAGACCCAGGAGCCCGGCCATCTGGGCTGAACCCCTGCAACCTGAAATGCTGACCTG-GGCCCAGCATCGGGCCT--GGAACCCACTGTCCTTCCCCCAGGGCCTGTGGGACAACCA-TGATGCCTGTCGTAGGGCCTTTGCTTTCAGCCCACAGTCAGGTGGAGAGTGGGCCTTGGCCTCCT---GAGGAAAGGCTGCAACC-CAGACCTTCAACCACATCCCCGGCCTG-TGTGAACATCCTGGGA-TTGTC-TTCCCCC-GGCAGTGCTGCAAAGGGCTGACAGATGTTTGGAACCTTCAGGAACAAGGCTCTCCCTGGGCTTTGCTCATGTCCGATGAGGGGCAGCTGATGGGGGCAGGCCACAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2920581 394 + 4466143 AGACACAGAAACATATGACTC-TGTAGACA-CCATAAGACCCAGGAGCTCAGCCACCTGGGCTGAACCCCTGCAACCTGAAATGCTGACCTG-GGCCCAGTGTCGGGCCT--AGAACCCACCGTCCTTCCCCCAGGGCCTGTGGGACAACCA-CCATGGCTGTCGTAGGGCCTTTGCTTTCAGCCCACACTCAGGTGGAGAGTGGGCCTTGGCCTCCTTCTGAGGAAAGGCTGCAACC-CAGACCTTCAACCACATCCCTGGCCTG-TGTGAACATCCTGGGA-TTTTA-TTCCCCCAGGCAGTGCTGCAAAGGGCTGACAGATGTTTGGAACCTTCAGGAACAAGGCTCTCTCTGGGCTTTGCTCATGTCCTATGAGGGGCAGCTGACAGGGGCAGGCCACAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1623527 395 + 5364348 AGACACAGAAACATATGACCC-TGTAGACA-CCGTAAGACCCAGGAGCCCGGCCATCTGGGCTGAACCCGTGCAACCTGAAATGCTGACCTG-GGCCCAGCATTGGGCCT--GGAACCCACTGTCCTTCCCCCAGGGCCTGTGGGACAACCACCCATGCCTGTCGTAGGGCCTTTGCTTTCAGCCCACACTCAGGTGCAGAGTGGGCCTTGGCCTCCTTCCGAGGAAAGGCTGCAACC-CAGACCTTCAACCACATCCCTGGCCTG-TGTGAACATCCTGAGA-TTTTC-TTCCCCCAGGCAGTGCTGCAAAGGGCTAACAGATGTTTGGAACCTTCAGGAACAAGGCTCTCCCTGGGCTTTGCTCATGTCCTATGAGGGGCAGCTGACTGGGGCAGGCCACAA i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 883642 371 - 1116856 ----AAAGACGCTCATGGCTCTTAAAGCCACCTTTGAGGCTCAGGAGACTGGCCA-CTGGGCTGAGCCCC-GCTGCCTGGAAGGCTGATTTTCCACGCAGCATTCTGACTTGGACACCTGCTTTTCTTTCCACAAAG---ATAGAGCAATAAGCCAGAGCTGACACAGTGCCCTGGCTTTCAGCCATAAC--AGGTCCACAGCTG--------CCTCCTTTGAGGGAGGTCTGTGACCAAAGGCCTTCGGCTCTA-CTCCAGCCAGGCATGGACATTCTGGGGTCATTC-CTTCCTCAGGCAGTGCTGCAAAGGCC-----GACATCTGGAGCACTGGAGAGCAAGAC--TCCCTGAGCTGTGTGCA--CCTAAGGAAGGACAGTTGAAGGGGCA---TCGTGA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9505706 753 - 31815103 I e mm10.chr5 124837218 173 + 151834684 I e proCoq1.NW_012154285v1 6759099 1024 - 9870158 I e canFam3.chr26 33192457 193 - 38964690 I e otoGar3.GL873618 4345198 0 + 7922563 C a score=556903.000000 s hg38.chr12_KI270834v1_alt 113700 60 + 119498 AGGCAGAGGGCCCTGGTGGTCGGACTGGGGACTTGGATTTGTGGGGCACCTGTcagatga s panTro5.chr12 127399295 60 + 137163284 AGGCAGAGGGCCCTGGTGGTCGGACTGGGGACTTGGATTTGTGGGGCACCTGTGagatga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125749598 60 + 135337776 AGGCAGAGGGCCCTGGTGGTCGGACTGGGGACTTGGATTTGTGGGGCACCTGTGagatga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8263181 60 - 8369578 AGGCAGAAGGCCCTGGTGGTCGGACTGGGGACTTGGATTTGTGGGGCACCTGTcagatga i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97921225 60 + 106955855 AGGCAGAAGGCCCTGGTGCTCAGACTGGGGACTTGGATTTGTGGGGCACCTGTcagatga i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124036289 60 + 133663169 AGGCAGAAGGCCCTGGCAGTCAGACTGGGGACTTGGATTTGTGGGGCACCTGTcagatga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128284480 60 + 137757926 AGGCAGAAGGCCCTGGCAGTCAGACTGGGGACTTGGATTTGTGGGGCACCTGTcagatga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10682969 60 - 16319837 AGGCAGAAGGCCCTGGCAGTCAGACTGGGGACTTGGATTTGTGGGGCACCTGTcagatga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12306870 60 + 20526591 AGGCAGAAGGCCCTGGCAGTCAGACTGGGGACTTGGATTTGTGGGGCACCTGTcagatga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119278632 60 + 128539186 AGGCAGAAGGCCCTGGCAGTCAGAGTGGGGACTTGGATTTGTGGGGCACCTGTcagatga i chlSab2.chr11 I 255 C 0 s manLeu1.NW_012103587v1 629801 60 + 6255621 AGGCAGAAGGCCCTGGCAGTCAGACTGGGGACTTGGATTTGTGGGGCACCTGTcagatga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4656286 60 - 8658521 AGGCAGAAGGCCCTGGCAGTCAGACTGGGGACCTGGATTTGTGGGGCACCTGTcagatga i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114862753 60 + 124281992 AGGCGGAAGACCCTGGTGTTCAAACCGGAAACTCTCACTTGCGGGGCACCTGTCAgagga i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 501980 60 - 9212255 AGGGGGAAGGCCCTGGTGTTCCAACTGGAAACTCACACTAGTGGCGcatctgtcatatga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2920975 60 + 4466143 AGGCAGAAGGCCCTTGTGTTCAAACCAGAAACTCACACTTGTGGGGcatctgtcatatga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1623922 60 + 5364348 AGGCAGAAGGCCCTGGTGTTCAAACCGGAAACTCACACCTGTGGGGcatctgtcatatga i aotNan1.NW_018491581v1 C 0 C 0 s dasNov3.JH568189 884013 44 - 1116856 AGGCAGAAGGCCCTGCTGGTCAGGGTGGAA------------GGAGCATGTACTGA---- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9505706 753 - 31815103 I e mm10.chr5 124837218 173 + 151834684 I e proCoq1.NW_012154285v1 6759099 1024 - 9870158 I e canFam3.chr26 33192457 193 - 38964690 I e otoGar3.GL873618 4345198 0 + 7922563 C a score=1929272.000000 s hg38.chr12_KI270834v1_alt 113760 213 + 119498 agatgcaggttcagagatgtcaaagaacctgcccaaggccacacagcccctccgagtcagagcagaggcccaaatctggggctcattaagcatcactctggt--tcttttcgccacagcatcctgAGAGAAGCTCCTCCT-GGATAGACATCCTCCTCATCATCCTTCCTTGAGAGTCATCTAGCTGTGCTGCCTCCTCCTC-CAGGGTGCAGCCTT s panTro5.chr12 127399355 213 + 137163284 agatgcaggttcagagatgtcaaagaacctgcccaaggccacacagcccctccgagtcagagcagaggcccaaatctgggcctcattaagcatcactctggt--tcttttggccacagcatcCTGAGAGAAGCTCCTCCT-GGATAGACATCCTCCTTATCATCCTTCCTTGAGAGTCATCTAGCTGTGCTGCCTCCTCCTC-CAGGGTGCAGCCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125749658 213 + 135337776 agatgcaggttcagagatgtcaaagaacctgcccaaggccacacagcccctccgagtcagagcagaggcccaaatctggggctcattaagcatcactctggt--tcttttggccacagcatcCTGAGAGAAGCTCCTCCT-GGATAGACATCCTCCTTATCATCCTTCCTTGAGAGTCATCTAGCTGTGCTGCCTCCTCCTC-CAGGGTGCAGCCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8263241 213 - 8369578 agatgcaggtttagagatgtcaaagaacctgcccaaggccacacagcccctccgagtcagagcagaggcccgaatctggggctcattaagcatcactctggt--tcttttggccacagcatcCTGAGAGAAGCTCTTCCT-GGATAGACATCCTCCTTATCATCCTTCCTTGAGAGTCATCTAGCTGTGCTGCCTCCTCCTC-CAGGGTGCAGCCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97921285 213 + 106955855 agatgcaggttcagagatgtcaaagaacttgcccaaggccacacagcccctccgagtcagagcagaggcccgaatctggggctcattaagcatcactctggt--tcttttggccacagcatcCTAAGAGAAGCTCTTCCT-GGACAGACATCTTCCTTATCATCCTTCCTTGAGAGTCATCTAGCTGTGCTGCCTCCTCCTC-CAGGGTGCAGCCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124036349 213 + 133663169 agatgcaggttcagagatgtcaaagaacttgcccaaggccacacagtccctctgagtcagagtagaggcccgaatctggggatcactaagcatcactctggt--tcttttggccacagcatcCTGAGAGAAGCTTTTCCT-GGACAGACATTCTCCTTATCATCCTTCCTTGAGAGTCATCTAGCTGTGCTGGCTTCTCCTC-CAGGGTGCGGCCTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128284540 213 + 137757926 agatgcaggttcagagatgtcaaagaacttgcccaaggccacacagtccctctgagtcagagtagaggcccgaatctggggatcactaagcatcactctggt--tcttttggccacagcatcCTGAGAGAAGCTTTTCCT-GGACAGACATTCTCCTTATCATCCTTCCTTGAGAGTCATCTAGCTGTGCTGGCTTCTCCTC-CAGGGTGCGGCCTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10683029 213 - 16319837 agatgcaggttcagagatgtcaaagaacttgcccaaggccacacagtccctctgcgtcagagtagaggcccgaatctggggatcactaagcatcactctggt--tcttttgaccacagcatcctgAGAGAAGCTCTTCCT-GGACAGACATTCTCCTTATCATCCTTCCTTGAGAGTCATCTAGCTGTGCTGCCTTCTCCTC-CAGGGTGCGGCCTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12306930 213 + 20526591 agatgcaggttcagagatgtcaaagaacttgcccaaggccacacagcccctctgagtcagagcagaggcccgaatctggggctcgctaagcatcactctggt--tcttttggccacagcatcCTGAGAGCAGCTTTTCCT-GGACAGACATTCTCCTTATCATCCTTCCTTGAGAGTCATCTAGCTGTGCTGCCTTCTCCTC-CAGGGCGCGGCCTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119278692 213 + 128539186 agatgcaggttcagagatgtcagagaacttccccaaggccacacagcccctctgagtcagagcagaggcccgaatctggggctcactaagcatcactctggt--tcttttggccacagcatcCTGAGAGAAGCTTTTCAT-GGACAGACATTCTCCTTATCATCCTTCCTTGAGAGTCATCTAGCTGTGCTGCCTTCTCCTC-CAGGGTGCAGCCTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 629861 213 + 6255621 agatgcaggttcagagatgtcaaagaacttgcccaaggccacacagcccctctgagtcagagcagaggcccgaatctggggctcactaagcatcactctggt--tcttttggccacagcatcCTGAGAGCAGCTTTTCCT-GGACAGACATTCTCCTTATCATCCTTCCTTGAGAGTCATCTAGCTGTGCTGCCTTCTCCTC-CAGGGCGCGGCCTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4656346 213 - 8658521 agatgcaggttcagagatgtcaaagaacttgcccaaggccacacagcccctctgagtcagagcagaggcccgaatctggggctcactaagcatcactctggt--tcttttggccacagcatcCTGAGAGAAGCTTTTCCT-GGACGGACATTCTCCTTATCACCCTTCCTTGAGAGTCATCTAGCTGTGCTGCCTTCTCCTC-CAGGGTGCAGCCTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114862813 174 + 124281992 agacgcaggttcagggatgtcagagaacttgcctgaggccccacag-cCCTCCAGGTT-------------------GCGGCTCACTACACATCACTCTGGT--TCTTTGGGCCACAGCATCCTGAGAGA--CTGTTCCTGGGACGGACATCCTCCTTATCCTCTTTCCTTGAAAGTAATCTAGCTGT-------------------GTGCAGCCTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 502040 174 - 9212255 agatgcaggttcagagatgtcaaagaacgtgcccaaggccccataacCCCTGCAAGTC-------------------GGAGCTCACTACACATCACTCTGGT--TCTTTCGGCCACAGCATCCTGAGAGA--CTGTTCCT-GGACGGACATCCTCCTTATCCTCTTTCCTTGAGAGTAATCTAGCTTT-------------------GTGCAGCCTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2921035 174 + 4466143 agatgcaggttcagggatgtcaaagaacttgcctaaggccccataacCCCTCCAAATC-------------------GGGGTGCATTACACATCACTCTGGC--TCTTTTGGCCACAGCATCCTGAGAGA--CTGTTCCT-GGACAGACATCCTCCTTATCCTCTTTCCTTGAGCGTAATCTAGCTGT-------------------GTGCAGCCTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1623982 174 + 5364348 agatgcaggttcagggatgtcaaagaacttgcccaaggccccacagcCCCTCCAAGTC-------------------GGGGCTCACTATGCATCACTCTGGT--TCTTTTGGCCACAGCATCCTGAGAGG--CTGTTCCT-GGACGGACATCCTCCTTATTCTCTTTCCTTGAGAGTAATCTAGCTGT-------------------GTGCAGCCTT i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124837391 187 + 151834684 AGTCACAGGTACAGAGCCATTACAGACATTATCAGAGA-CGCACAACCCT----AGTCCCAGAAGAACATGAAATCCAGGGCTCCTTAGTAA-------GGTGCTCTTTTGGCCTCCCATTCCTAAGAGG-------CTT-GGGCAAACATT---------GTCCTTCCCTGAAAATGACCTAGCTAACCTGCTGTCTGTGC-TCAGGTACAATCTT i mm10.chr5 I 173 C 0 s dasNov3.JH568189 884057 194 - 1116856 --GGACaggcttgggaaggt-aagtcactcgccaaggaccacagggttcgtcagagatggggcagagatctgaggtcaggtctctctaa----cgctaaagt------cGGATCACACCATCCTAAAAGGGGCCATACCT-TGGCAGCCACC---------ATCATTCCTTGAAAATAAGTTAGTTGGACTGCTTTCTCTTCTCAGAATGCAGCCCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9505706 753 - 31815103 I e proCoq1.NW_012154285v1 6759099 1024 - 9870158 I e canFam3.chr26 33192457 193 - 38964690 I e otoGar3.GL873618 4345198 0 + 7922563 C a score=1040322.000000 s hg38.chr12_KI270834v1_alt 113973 102 + 119498 GGCTCCGGGCTGATGTTTACCGGCCC-CGACTTGAGTGGGCCGTCCTGTGGGAAGGAGCTGGTACGACTGCT-CCTCCATCC-CCA--GCTCTGGAGAGCTG--CTTCA s panTro5.chr12 127399568 102 + 137163284 GGCTCCGGGCTGATGTTTACCGGCCC-CGACTTGAGTGGGCCGTCCTGTGGGAAGGAGCTGGTGCGACTGCT-CCTCCATCC-CCA--GCTCTGGAGAGCTG--CTTCG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125749871 102 + 135337776 GGCTCCGGGCTGATGTTTACCGGCCC-CGACTTGAGTGGGCCGTCCTGTGGGAAGGAGCTGGTGCGACTGCT-CCTCCATCC-CCA--GCTCTGGAGAGCTG--CTTCG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8263454 102 - 8369578 GGCTCCGGGCTGATGTTTGCCGGCCC-CGACTTGAGTGGGCCGTCCTGTGGGAAGGAGCTGGTGCGACTGCT-CCTCCATCC-CCA--GCTCTGGAGAGCTG--CTTCG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97921498 102 + 106955855 GGTCCCAGGCTGGTGTTTGCTGGCTC-CGACTGGAGTGGGCCTTCCTGTGGGAAGGAGCTGGTGCGACTGCT-CCTCCATCC-CGA--GCTCTGGAGAGCTG--CTTCG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124036562 102 + 133663169 GGCTCCGGGCTGATGTTTGCCGGCCC-TGACTTGAGCGGGCCGTCCTATGGGAAGGAGCTGGTGCGACTCCT-CCTCCATCC-CCA--GCTCTGGAGAGCTG--CTTCG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128284753 102 + 137757926 GGCTCCGGGCTGATGTTTGCCGGCCC-TGACTTGAGCGGGCCGTCCTATGGGAAGGAGCTGGTGCGACTCCT-CCTCCATCC-CCA--GCTCTGGAGAGCTG--CTTCG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10683242 102 - 16319837 GGCTCCGGGCTGATGTTTGCCGGCCC-TGACTTGAGCGGGCCGTCCTATGGGAAGGAGCTGGTGCGACTCCT-CCTCCATCC-CCA--GCTCTGGAGAGCTG--CTTCG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12307143 102 + 20526591 GGCTCCGGGCTGATGTTTGCCGGCCC-TGACTTGAGCGGGCCGTCCTATGGGAAGGCGCTGGTGCGACTCCT-CCTCCATCC-CCA--GCTCTGGAGAGCTG--CTTCG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119278905 101 + 128539186 GGCTCCGGGCTGATGTTTGCCGGCCC-TGACTTGAGCGGGCCGTCCTATGGGAAGGAGCTGGTGCGACTCCT-CCTCCAT-C-CCA--GCTCTGGAGAGCTG--CTTCG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 630074 102 + 6255621 GGCTCCGGGCTGATGTTTGCCGGCCC-TGACTTGAGCGGGCCGTCCTATGGGAAGGTGCTGGTGCGACTTCT-CCTCCATCC-CCA--GCTCTGGAGAGCTG--CTTCG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4656559 102 - 8658521 GGCTCCGGGCTGATGTTTGCCAACCC-TGACTTGAGCGGGCCGTCCTATGGGAAGGAGCTGGTGCGACTCCT-CCTCCATCC-CCA--GCTCTGGAGAGCTG--CTTCG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114862987 101 + 124281992 GGCTCCCAGCTGATGTTTGCTGGCCG--GACTTGAGTGGGCCGTCCTGTGGGAAGGAGCTGGCGCAACTGCT-CCTTCATCC-CCA--GCTCTGGAGAGCTG--TTTTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 502214 101 - 9212255 GGCTCCCAGCTGATGTCTGCTGGCCC--GACTTGAGTGGGCCGTCCTGTGGGAAGGAGCTGGCGCGACTGCT-CCTTCATCC-CCA--GCTCTGGAGAGCTG--CTTTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2921209 101 + 4466143 GGCTCCCAGCTGATGTTTGCTGGCCC--GACTTGAGTGGGCCGTCCTGTGGGAAGGAGCTGGCGCGACTGCT-CCTCCATCC-CCA--GCTCTGGAGAGCTG--CTTCG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1624156 101 + 5364348 GGCTCCCAGCTGATGTTTGCTGGCCC--AACTTGAGTGGGCCGTCCTGTGGGAAGGAGCTGGCGCGACTGAT-CCTCCATCC-CCA--GCTCTGGAGAGCTG--CTTCG i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124837578 58 + 151834684 GGCACAGATCT------TGCAGGCAC--------------------TACTGGGAGGCTCTGGTACCCCTGGT-CTTCTACAC-ACA----------------------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33192650 85 - 38964690 GGCTATGGACCGATGTTTATTGGCTCCCAATTTGGAT--CTCTTCC---------------GTCCACCTGCC-CCCACCTCC-CTGAGACTCCGGAGAGCTG--CT--- i canFam3.chr26 I 193 C 0 s dasNov3.JH568189 884251 106 - 1116856 GGCTGGGTATTTATGCTTACTGGCCT-CTGATTTAGTGGGTGACGGTGAGGGAAGCAGCTGGTAGAACTGATGCCTCCTTCCATTG--ACTTAAGAATGCTGTTCTTCA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9505706 753 - 31815103 I e proCoq1.NW_012154285v1 6759099 1024 - 9870158 I e otoGar3.GL873618 4345198 0 + 7922563 C a score=235217.000000 s hg38.chr12_KI270834v1_alt 114075 18 + 119498 GTGACTGTCCTTCCCAGG s panTro5.chr12 127399670 18 + 137163284 GTGACTGTCCTTCCCGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125749973 18 + 135337776 GTGACTGTCCTTCCCGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8263556 18 - 8369578 GTGACTGTCCTTCCCGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97921600 18 + 106955855 GTGACTGTCCTTCCTGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124036664 18 + 133663169 GTGACTGTCCTTCCTGGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128284855 18 + 137757926 GTGACTGTCCTTCCTGGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10683344 18 - 16319837 GTGACTGTCCTTCCTGGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12307245 18 + 20526591 GTGACTGTCCTTCCTGGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119279006 18 + 128539186 GTGACTGTCCTTCCTCGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 630176 18 + 6255621 GTGACTGTCCTTCCTGGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4656661 18 - 8658521 GTGACTGTCCTTCCTGGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114863088 18 + 124281992 GTGACTGTCCTTCCTGGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 502315 18 - 9212255 GTGACTGTCCTTCCTGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2921310 18 + 4466143 GTGACTGTCCTTCCTGGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1624257 18 + 5364348 GTGACTGTCCTTCCTGGG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6760123 18 - 9870158 GTGACTGTCCTTCCTGCA i proCoq1.NW_012154285v1 I 1024 C 0 s mm10.chr5 124837636 11 + 151834684 -------TCTTCTCTAGA i mm10.chr5 C 0 C 0 s canFam3.chr26 33192735 14 - 38964690 ----CTTTAGTTCCCAGG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 884357 18 - 1116856 GAGATTATCATTCTCATG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9505706 753 - 31815103 I e otoGar3.GL873618 4345198 0 + 7922563 C a score=876408.000000 s hg38.chr12_KI270834v1_alt 114093 66 + 119498 AATCAGCACCTCCTGTTTTG-----CCAATTTCTTGCTCTT----TATAGAAAGCTCCACTCCACCTCCTCCTCT s panTro5.chr12 127399688 66 + 137163284 AATCAGCACCTCCTGTTTTG-----CCAATTTCTTGCTCTT----TATAGAAAGCTCCACTCCACCTCCTCCTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125749991 66 + 135337776 AATCAGCACCTCCTGTTTTG-----CCAATTTCTTGCTCTT----TATAGAAAGCTCGACTCCACCTCCCCATCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8263574 66 - 8369578 AATCAGCACCTCCTGTTTTG-----CCAATTTCTTGCTCTT----TATAGAAAGCTCCACTCCACCTCCTCCTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97921618 66 + 106955855 AATCAGCACCTCCTGTTTTG-----CCAATTTCTTGCTGTT----TATAGAAAGCTCCACTCCACCTCCTCCTCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124036682 66 + 133663169 AATCAGCACCTCCTGTTTTG-----CCAATTTCTTGCTCTT----TATAGAAAGCTCCACTCTACCTCCTCCTCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128284873 66 + 137757926 AATCAGCACCTCCTGTTTTG-----CCAATTTCTTGCTCTT----TATAGAAAGCTCCACTCTACCTCCTCCTCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10683362 66 - 16319837 AATCAGCACCTCCTGTTTTG-----CCAATTTCTTGCTCTT----TATAGAAAGCTCCACTCTACCTCCTCCTCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12307263 66 + 20526591 AATCAGCACCTCCTGTTTTG-----CCAATTTCTTGCTCTT----TATAGAAAGCTCCACTCTACCTCCTCCTCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119279024 66 + 128539186 AATCAGCACCTCCTGTTTTG-----CCAATTTCTTGCTCTT----TACAGAAAGCTCCACTCTACCTCCTCCTCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 630194 66 + 6255621 AATCAGCACCTCCTGTTTTG-----CCAATTTCTTGCTCTT----TATAGAAAGCTCCACTCTACCTCCTCCTCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4656679 66 - 8658521 AATCAGCACCTCCTGTTTTG-----CCAATTTCTTGCTCTT----TATAGAAAGCTCCAGTCTACCTCCTCCTCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114863106 68 + 124281992 AATCAGCACCTCCTGTTTTG-----CCAATTCCTTACTCTT--TATATAGAAAGCTCCACTCCACCACCTCCTCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 502333 70 - 9212255 AATCAGCACCTCCTGTTTTG-----CCAATTCCTTACTCTTTATATATAGAAAGCTCCACTCCACCACCTCCTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2921328 68 + 4466143 AATCGGCACCTCCTGTTTTG-----CCAATTCCTTACTCTT--TATATAGAAAGCTCCACTCCACCACCTCCTCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1624275 68 + 5364348 AATCAGCACCTCCTGTTTTG-----CCAATTCCTTACTCTT--TATATAGAAAGCTCCATTCCACCACCTCCTCT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9506459 66 - 31815103 AATCAGCACCTCCTGTTCTG-----CCAACTTTCCACTTTT----TATAGGAAGCTCCACTCCACCTCTTCCTCT i micMur3.chr21 I 753 I 993 s proCoq1.NW_012154285v1 6760141 66 - 9870158 AATCAGCACCTCCTGTTTTG-----CCAATTTTCCACTTTT----CATAGGAAGCTCCACTCCACCTCTTCCTCT i proCoq1.NW_012154285v1 C 0 C 0 s mm10.chr5 124837647 11 + 151834684 ----------------------------------------------------AACTTGATTTT------------ i mm10.chr5 C 0 C 0 s canFam3.chr26 33192749 67 - 38964690 -ATCACCACCTCCAAAGTGGCACCTCTGATTTCCACTCTTC----TATAGGAAGCTCTGCTCTACCTCCTCC--- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 884375 67 - 1116856 AATTTGTACTTCCTCTTTTG-----CCAATTTTCCAGCCTC---CTATGGGAAGCTCCACTCCATCGTCTCCTCT i dasNov3.JH568189 C 0 C 0 e otoGar3.GL873618 4345198 0 + 7922563 C a score=268425.000000 s hg38.chr12_KI270834v1_alt 114159 24 + 119498 GTACG----TACCCCCTTTCTGGAAATT s panTro5.chr12 127399754 24 + 137163284 GTACG----TACCCCCTTTCTGGAAATT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125750057 24 + 135337776 GTATG----TACCCCCTTTCTGGAAATT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8263640 24 - 8369578 GTACG----TACCCCCTTTCTGGAAATT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97921684 24 + 106955855 GTACG----TACCCCCTTTCTGGAAATT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124036748 24 + 133663169 GTACA----TACCCCCTTTCTGGAAATT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128284939 24 + 137757926 GTACA----TACCCCCTTTCTGGAAATT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10683428 24 - 16319837 GTACA----TACCCCCTTTCTGGAAATT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12307329 24 + 20526591 GTACA----TACCCCCTTTCTGGAAATT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119279090 24 + 128539186 GTACA----TACCCCCTTTCTGGAAATT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 630260 24 + 6255621 GTACA----TACCCCCTTTCTGGAAATT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4656745 24 - 8658521 GTACA----TACCCCCTTTCTGGAAATT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114863174 24 + 124281992 GTACA----TACCCTCTTTCTGGAAATT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 502403 23 - 9212255 GTACA----TACCC-CTTTCTGGAAATT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2921396 24 + 4466143 GTACA----TACCCCCTTTCTGGGGATT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1624343 24 + 5364348 GTACA----TACCCGCTTTCTGGAAATT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6760207 24 - 9870158 ACACA----CACACCCTTTCTAGAAATT i proCoq1.NW_012154285v1 C 0 I 526 s mm10.chr5 124837658 10 + 151834684 -------------CCTTGTCTAG----- i mm10.chr5 C 0 C 0 s canFam3.chr26 33192816 15 - 38964690 -------------ACCTTTCTAGAAGTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 884442 26 - 1116856 --ACAACCTCTCCCTTCTTCTAGGAATT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9506525 993 - 31815103 I e otoGar3.GL873618 4345198 0 + 7922563 C a score=2011880.000000 s hg38.chr12_KI270834v1_alt 114183 209 + 119498 TCAGTCTT---------------CCCATGAAAGCTTGGTGCACACTGAGCTGA-CAGCAGCCAACTGCTGCTGGTCTCCAAACGCTGCACTG-CTGAGCCTGCCCGAGCGTCAGGGCACTGCAACGCTTCTAAA----------------------------------------------------------------------------CCTGCGCACT--------------------------------------------CCCTGGGCCCGCCC-AGACTTCTGGGGTCACAGCCCCCAGGGGAGGGAAGCCAAGAGTCTATG-CTGTACCCTGGGTCCCGAAA s panTro5.chr12 127399778 208 + 137163284 TCAGTCTT---------------CCCATGAAAGCTTGGTGCACACTGAGCTGA-CAGCAG-CAACTGCTGCTGGTCTCCAAACGCTGCACTG-CTGAGCCTGCCCGAGCGTCAGGGCACTGCAACGCTTCTAAA----------------------------------------------------------------------------CCTGCGCACT--------------------------------------------CCCTGGGCCCGCCC-AGACTTCTGGGGTCACAGCCCCCAGGGGAGGGAAGCCAAGAGTCTATG-CTGTACCCTGGGTCCCGAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125750081 208 + 135337776 TCAGTCTT---------------CCCATGAAAGCTTGGTGCACACTGAGCTGA-CAGCAG-CAACTGCTGCTGGTCTCCAAACGCTGCACTG-CTGAGCCTGCCCGAGCGTCAGGGCACTGCAACGCTTCTAAA----------------------------------------------------------------------------CCTGCGCACT--------------------------------------------CCCTGGGCCCGCCC-AGACTTCTGGGGTCACAGCCCCCAGGGGAGGGAAGCCAAGAGTCTATG-CTGTACCCTGGGTCCCGAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8263664 201 - 8369578 TCAGTCTT---------------CCCATGAAAGCTTGGTGCACACTG---------TCAGGCAACTGCTGCTGGTCTCCAAACGCCGCACTG-CGGAGCCTGCCCGAGTGTCAGGGCACTGCAGTGCTTCTAAA----------------------------------------------------------------------------CCTGTGCACT--------------------------------------------CCCTGGGCCCGCCC-AGACTTCTGGGGTCACAGCCCCCAGGGGAGGGAAGCCAAGAGTCTATG-CTGTACCCTGGGTCCCGAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97921708 208 + 106955855 TCAGTCTT---------------CCCATGAAAGCTTGGTGCACACTGAGCTGA-CAGCAG-CAACTGCTGGTGGTCTCCAAACGCCGCACTG-CTGAGCCTGCTCGAGCGTCAGGGCACTGCAGCGCTTCTAAA----------------------------------------------------------------------------CCTGCGCACT--------------------------------------------CCCTGGGCCCGCCC-AGACTTCTGGGGTCACAGCCCCCAGGGGAGGGAAGTCAAGAGTCTATG-CTGTACCCTCGGTCCCGAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124036772 208 + 133663169 TCAGTCTT---------------CCCATGAAAGCTTGGTGCACACTGAGCTGA-CAACAG-CAACTGACGCTGGTCTCCAAACGCCACACTG-CTGAGCCTGCCCAAGCGTTAGGGCACTGCAGTGCTTATAAA----------------------------------------------------------------------------CCTGTGCACT--------------------------------------------CCCAGGGCCAGCCC-AGACTTCTGGGGTCACAGCCCCCAGGGGAGGGAAGCCAAGAGTCTATG-CTGTACCCTGGGTCCCGGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128284963 208 + 137757926 TCAGTCTT---------------CCCATGAAAGCTTGGTGCACACTGAGCTGA-CAACAG-CAACTGACGCTGGTCTCCAAACGCCACACTG-CTGAGCCTGCCCAAGCGTTAGGGCACTGCAGTGCTTATAAA----------------------------------------------------------------------------CCTGTGCACT--------------------------------------------CCCAGGGCCAGCCC-AGACTTCTGGGGTCACAGCCCCCAGGGGAGGGAAGCCAAGAGTCTATG-CTGTACCCTGGGTCCCGGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10683452 208 - 16319837 TCAGTCTT---------------CCCATGAAAGCTTGGTGCACACTGAGCTGA-CAACAG-CAACTGACGCTGGTCTCCAAACGCCACACTG-CTGAGCCTGCCCAAGCGTTAGGGCACTGCAGTGCTTATAAA----------------------------------------------------------------------------CCTGTGCACT--------------------------------------------CCCAGGGCCAGCCC-AGACTTCTGGGGTCACAGCCCCCAGGGGAGGGAAGCCAAGAGTCTATG-CTGTACCCTGGGTCCCGGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12307353 208 + 20526591 TCAGTCTT---------------CCCACGAAAGCTTGGTGCACACTGAGCTGA-CAACAG-CAACTGACGCTGGTCTCCAAACGCCACACTG-CTGAGCCTGCCCAAGCGTTAGGGCACTGCAGTGCTTATAAA----------------------------------------------------------------------------CCTGTGCACT--------------------------------------------CCCAGGGCCAGCCC-AGACTTCTGGGGTCACAGCCCCCAGGGGAGGGAAGCCAAGAGTCTATG-CTGTACCCTGGGTCCCGGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119279114 208 + 128539186 TCAGTCTT---------------CCCATGAAAGCTTGGTGCACACTGAGCTGC-AAACAG-CAACTGATGCTGGTCTCCAAACGCCACACTG-CTGAGCCTGCACAAGCGTTAGGGCACTGCAGTGCTTATAAA----------------------------------------------------------------------------CCTGTGCACT--------------------------------------------CCCAGGGCCAGCCC-AGACTTCTGGGGTCACAGCCCCCAGGGGAGGGAAGCCAAGAGTCTATG-CTGTACCCTGGGTCCCGGAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 630284 208 + 6255621 TCAGTCTT---------------CCCATGAAAGCTTGGTGCACACTGAGCTGA-CAACAG-CAACTGACGCTGGTCTCCAAACGCCACACTG-CTGAGCCTGCCCAAGCGTTAGGGCACTGCAGTGCTTATAAA----------------------------------------------------------------------------CCTGTGCACT--------------------------------------------CCCAGGGCCAGCCC-AGACTTCTGGGGTCACAGCCCCCAGGGCAGGGAAGCCAACAGTCTATG-CTGTACCCTGGGTCCCGGAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4656769 206 - 8658521 TCAGTCTT---------------CCCATGAAAGCTTGGTGCACACTGAGCTGA-CAACAG-CAACTGATGCTGGTCTCCAAATGCCACACTG-CTGAGCCTGCCCGAGCGTTAGGGCACTGCAGTGCTTCTAAA----------------------------------------------------------------------------CC--TGCGCT--------------------------------------------CTCAGGGCCAGCCC-AGACTTCTGGGGTCACAGCCCCCAGGGGAGGGAAGCCAAGTGTCTATG-CTGTACCCTGGGTCCCGGAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114863198 207 + 124281992 TCAGTCTT---------------CCCGTGAAAGCTTTGTGCACACTAAGCTGA-CAGCAG-CAACTGGTCCTGGTCTCCAAACACTGCACTG-CTAAGCCTGGCTGAGTGTGAGGGCACCGCAGTACATCGAAA----------------------------------------------------------------------------CCTGCGGACT--------------------------------------------CCCAGGGCTCGCCC-AGACTTCTGGGATCACAG-CCCCAGGGGAGGGAAGCCAACAGTCTATG-CTGTACCCTGGGTCCCAGAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 502426 209 - 9212255 TCAGTCTC---------------CCCGTGAAAGCTTTGTGCACACTGAGCCGA-CAGCAG-CAACTGGTCCTGGTCTCCAAACACTGCACTG-CTAAGCCTGGCTGAGGGTGAGGGCACCGCAGCGCATCTAAA----------------------------------------------------------------------------CCTGTGGACT------------------------------------------CCCCCCGAGCCCGCCC-AGACTTCTGGGGTCACAG-CCCCAGGGGAGGGAAGCCAAGAGTCCGTG-CTGTACCCTGGGTCCCAGAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2921420 205 + 4466143 TCAGTCTC---------------CCCGTGAAAGCTTTGTGCACACTGAGCT-A-CAGCAG-CAACTGCTCCTTGTCTCCAAACAC-GCACTG-CTAAGCCTGGCTGGGTGTGAGGGCACCGTAGCACATCTAAA----------------------------------------------------------------------------CCTGTGGACT--------------------------------------------CCCAGGGCCCGCCC-AGACTTCTGGGGTCACAG-CCCCAGGGGAGGGAAGCCAAGAGTCTAGG-CTGTACCCCGGGTCCCAGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1624367 205 + 5364348 TCAGTCTC---------------CCCGTGAAAGCTTTGTGCACACTGAACAGA-CAGCAG-CAACTGGTCCTGGTCTCCAAACACTGCACTG-CTAAGCCTGGCTGAGTGTGAGGGCACCGCAGCGCATCTAAA----------------------------------------------------------------------------CCTGGGGACT--------------------------------------------CCCAGGGCCCGCCC-AGACTTCTGGGGTCACAG-CTCCAGGGGAGGGAGGCCAAGAGTCT--G-CTGTACCCTGGGGCCCAGAG i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124837668 139 + 151834684 -----------------------TCCATGAGAGGT--GTGCA-------------------GGACTATT-------------------------TGAGCCTG--TGTGTCCCTGGGTACTCCGGTGTATAGA------------------------------------------------------------------------------------------------------------------------------------TTCTAGGCCTCTCC-TGACTGCAGGCATCACGGCCTTCAGGGGAGAGGA-CCAGGGTTCT----TTCTAACCTGCCTTCTCAGC i mm10.chr5 C 0 C 0 s canFam3.chr26 33192831 330 - 38964690 TCAGTCTTTC------------CCCCATAAAAGCTGCATGTGCACTGAGCTGA--GGCAG-CAACTGCTCTTTATCACCTACAGCCAGACTC-CCCAG-CTGCCCAAGTGCTCAGTCATAGTGTCACTTTTTAAGAAATAAAAAACTTTTTTTTTAAGTcaccaaacatggggctcgaacttaaaccccgagagatcaagagtcacaggctctatggactgagccagccaggcGCCCCTCACTGTAGCATTTTTTAAACACGttctcaggtcccctccttgacccttggaatcagaa-cttcaggagagggagtccaggagcctgtatcttcacCCTGGGTCCCTAAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 884468 211 - 1116856 TCAGTGTTTCACCAGATGAAATACCCATGAAAGCTGTGTATAAGTTGAGGTGGTTGGCAG-CAATTGCTCTTTCTCACCTAAAGcagtatttcccaagcttgcctgagcagcaaatcactgcggcactcccagg----------------------------------------------------------------------------cc-----------------------------------------------------------ccagcac-agacattcagaatcacgacccccaggggagggaatctgggagtctgtatctttaaccagtgtccctgga i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9506525 993 - 31815103 I e proCoq1.NW_012154285v1 6760231 526 - 9870158 I e otoGar3.GL873618 4345198 0 + 7922563 C a score=318202.000000 s hg38.chr12_KI270834v1_alt 114392 31 + 119498 -CTGCTTGGAATTGGGC--AGTTTTGGGTGCACT s panTro5.chr12 127399986 31 + 137163284 -CTGCTTGGAATTGGGC--AGTTTTGGGTGCACT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125750289 31 + 135337776 -CTGCTTGGAATTGGGC--AGTTTTGGGTGCACT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8263865 31 - 8369578 -CTGCTTGGAATTGGGC--AGTTTTGGGTGCACT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97921916 31 + 106955855 -CTGCTTGGAATCGGGC--AGTTTTGGGTGCACT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124036980 32 + 133663169 -CTGCTTGGAATTGGGCA-AGTTTTGGGTGCACT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128285171 32 + 137757926 -CTGCTTGGAATTGGGCA-AGTTTTGGGTGCACT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10683660 32 - 16319837 -CTGCTTGGAATTGGGCA-AGTTTTGGGTGCACT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12307561 32 + 20526591 -CTGCTTGGAATTGGGCA-AGTTTTGGGTGCACT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119279322 32 + 128539186 -CTGCTTGGAATTGGGCA-AGTTTTGGGTGCACT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 630492 32 + 6255621 -CTGCTTGGAATTGGGCA-AGTTTTGGGTGCACT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4656975 32 - 8658521 -CTGCTTGGAATTGTGCA-AGTTTTGGGTGCACT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114863405 32 + 124281992 -CTGCTTAGAACTGGGCA-GGTTTTGAATGCACT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 502635 32 - 9212255 -CTGCTTAGAACTGGGTA-GGTTTTGAATGCACT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2921625 32 + 4466143 -CTGCTTAGAACTGGGCA-GGTTTTGAATGCACT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1624572 32 + 5364348 -CTGCTTAGAACTGAGCA-GGTTCTGAACGCACT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4345198 33 + 7922563 -CTTCTTAGGATTGGGCAGAGTTTGGGAAGCACC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124837807 18 + 151834684 -----------TTG-----TGTTTGACATGCACT i mm10.chr5 C 0 I 2 s canFam3.chr26 33193161 22 - 38964690 -----------CTGAGCA-AGTTCTTCAACTGCT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 884679 33 - 1116856 gagtctgagtactgggca-agattTGGGTGCGCC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9506525 993 - 31815103 I e proCoq1.NW_012154285v1 6760231 526 - 9870158 I a score=314167.000000 s hg38.chr12_KI270834v1_alt 114423 29 + 119498 AATGTAAAACAATGATTTTCACCACTGGG s panTro5.chr12 127400017 29 + 137163284 AATGTAAAACAATGATTTTCACCACTGGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125750320 29 + 135337776 AATGTAAAACAATGATTTTCACCACTGGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8263896 29 - 8369578 AATGTAAAACAATGATTTTCACCACTGGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97921947 29 + 106955855 AATGTAAAACAATGATTTTCACCACTGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124037012 26 + 133663169 AATGTAAAACAAT---TTTCACCACTGGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128285203 26 + 137757926 AATGTAAAACAAT---TTTCACCACTGGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10683692 26 - 16319837 AATGTAAAACAAT---TTTCACCACTGGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12307593 26 + 20526591 AATGTAAAACAAT---TTTCACCACTGGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119279354 26 + 128539186 AATGTAAAACAAT---TTTCACCACTGGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 630524 26 + 6255621 AATGTAAAACAAT---TTTCACCACTGGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4657007 28 - 8658521 AATGTAAAACAACAA-TTTCGCCACTGGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114863437 29 + 124281992 AATGTAAAACGTCAATCTTCACCACTGGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 502667 29 - 9212255 AATGTAAAACATCGATCTTCACCACTGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2921657 29 + 4466143 AATGTAAAACATCGATCTTCACCACTGGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1624604 29 + 5364348 AATGTAAAACATCGATCTTCACCACTGGG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6760757 29 - 9870158 AATGTAAAGCGATGATTTTCACCACTGGG i proCoq1.NW_012154285v1 I 526 I 543 s otoGar3.GL873618 4345231 29 + 7922563 AATGTAAAGCAATGATGTTCACTCCGGGG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124837827 25 + 151834684 ACTGAGAAATAG----CTTCACTCCAGGG i mm10.chr5 I 2 I 1 s canFam3.chr26 33193183 29 - 38964690 AACATAAAGCAGTGATTTCCAGTGCTGGG i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 884712 8 - 1116856 AATGTACA--------------------- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9506525 993 - 31815103 I a score=2931237.000000 s hg38.chr12_KI270834v1_alt 114452 299 + 119498 AGGGGAGACGCCCCGACTGGAACCACCT---GAGAGGCTTTTGAAACTGC---CTC--C----------CCTAAGACACAGCC-------C--------TTGCTGTGA-GACCCTGCTGCTGCTGGGAGTACTACATCAggtgggt----gggtgggtgggcaggtggCCTTGGGACCTCAGGTTGAGAACCGTGACTGG------AGAGGCCA---------------------------------------------------CAGGGCAAAA-CTATGCTGCTTCAGATTAGCCTGGGCCAGGAGAGGACA-GGGAGCGAGGACGCCCTGGCTTCCATGACACGGGTAGCTCCTTTCCCAAGGCTTCAGTGCTGGCAGG--TGTGGAC-GCTGGAG s panTro5.chr12 127400046 298 + 137163284 AGGGGAGACACCCCGACTGGAACCACCT---GAGAGGCTTTTGAAACTGC---CTC--C----------CCTAAGACACAGCC-------C--------TTGCTGTGA-GACCCTGCTGCTGCTGGGAGTACTACATCAggtgggt----gggtgggcgggcaggtggCCTTGGGACCTCGGGTTGAGAACCCTGACTGG------AGAGGCCA---------------------------------------------------CAGGGC-AAA-CTATGCTGCTTCAGATTAGCCTGGGCCAGGAGAGGACA-GGGAGCGAGGACGCCCTGGCTTCCATGACACGGGTAGCTCCTTTCCCAAGGCTTCAGTGCTGGCAGG--TGTGGAC-GCTGGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125750349 299 + 135337776 AGGGGAGACGCCCCGACTGGAACCACCT---GAGAGGCTTTTGAAACTGC---CTC--C----------CCTAAGACACAGCC-------C--------TTGCTGTGA-GACCCTGCTGCTGCTGGGAGTACTACATCAggtgggt----gggtgggcgggcaggtggCCTTGGGACCTCGGGTTGAGAACCCTGACTGG------AGAGGCCA---------------------------------------------------CAGGGCAAAA-CTATGCTGCTTCAGTTTAGCCTGGGCCAGGAGAGGACA-GGGAGCGAGGACGCCCTGGCTTCCATGACACGGGTAGCTCCTTTCCCAAGGCTTCAGTGCTGGCAGG--TGTGGAC-GCTGGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8263925 299 - 8369578 AGGGGAGACACCCCGACTGGAACCACCT---GAGAGGCTTTTGAAACTGC---CTC--C----------CCTAAGACACAGCC-------C--------TTGCTGTGA-GACCCTGCTGCTGCTGGGAGCACTACATCAggtgggt----gggtgggcgggcaggtggCCTTGGGACCTCGGATTGAGAACCCTGACTGG------AGAGGCCA---------------------------------------------------CAGGGCAAAA-CTACGCTGCTTCAGATTAGCCTGGGCCAGGAGAGGACA-GGGAGCGAGGACGCCCTGGCTTCCATGACATGGGTAGCTCCTTTCCCAAGGCTTCAGTGCTGGCAGG--TGTGGAC-GCTGGAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97921976 296 + 106955855 AGGGGAGAGACCCCAACTGGAACCACCT---GAGAGGCTTTTGAAACTGC---CTC--C----------CCTAAGACACAGCC-------C--------TTGCTGTGAGGACCCTGCTGCTGCTGGGAGCACTACATCAGGTGGGT----GGGCGGGCGGGC----GGCCTTGGGACCTGGGGTTGAGAACCTTGACTGG------CGAGGCCA---------------------------------------------------CAGGGCAAAA-GTATGCTGCTTCAAATTAGCCTGGGCCAGGAGGGGACA-GGGAGCGAGGACGCCCTGGCTTCCACGACATGGGTAGCTCCTTTCCCAAGGCTTCAGTGCTGGCAGG--TGTGGAT-GCTGGAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124037038 293 + 133663169 AGGGGAGATG-CCCCACTGGAACCACCT---GAGAGGCTTTTGAAACTGC---CTC--T----------TCTAAGACACAGCC-------C--------TTGCTGTGAGGACCCTGCTGCTGCTGGGAGCACTGCATCAGGTGGGT----GGGCAGGCGGGC----GGCCTTGGGACCTGGGGCTGAGAACCTTGACTGG------AGAGGCCA---------------------------------------------------CAGGGCAAAA---GTGCTTCTTCAGATTAGCCTGGGCCAGGAGGGGACA-GGGAGCAAGGACGCCCTGGCTTCCGTGACACGGGTAGCTCCTTTCCCAAGGCTTCAGTAGTGGCAGG--TGTGGAC-GCTGGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128285229 293 + 137757926 AGGGGAGATG-CCCCACTGGAACCACCT---GAGAGGCTTTTGAAACTGC---CTC--T----------TCTAAGACACAGCC-------C--------TTGCTGTGAGGACCCTGCTGCTGCTGGGAGCACTACATCAGGTGGGT----GGGCAGGCGGGC----GGCCTTGGGACCTGGGGCTGAGAACCTTGACTGG------AGAGGCCA---------------------------------------------------CAGGGCAAAA---GTGCTTCTTCAGATTAGCCTGGGCCAGGAGGGGACA-GGGAGCAAGGACGCCCTGGCTTCCGTGACACGGGTAGCTCCTTTCCCAAGGCTTCAGTAGTGGCAGG--TGTGGAC-GCTGGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10683718 295 - 16319837 AGGGGAGATG-CCCCACTGGAACCACCT---GAGAGGCTTTTGAAACTGC---CTC--T----------TCTAAGACACAGCC-------C--------TTGCTGTGAGGACCCTGCTGCTGCTGGGAGCACTACATCAGGTGGGT----GGGCAGGCGGGC----GGCCTTGGGACCTGGGGCTGAGAACCTTGACTGG------AGAGGCCA---------------------------------------------------CAGGGCAAAA-GTGTGCTTCTTCAGATTAGCCTGGGCCAGGAGGGGACA-GGGAGCAAGGACGCCCTGACTTCCGTGACACGGGTAGCTCCTTTCCCAAGGCTTCAGTAGTGGCAGG--TGTGGAC-GCTGGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12307619 299 + 20526591 AGGGGAGATA-CCCCACTGGAACCACCT---GAGAGGCTTTCGAAACTGC---CTC--T----------TCTAAGACACAGCC-------C--------TTGCTGTGAGGACCCTGCTGCTCCTGGGAGCACTACATCAggtgggtgggcgggcaggcgggc----ggCCTTGGGACCTGGGGCTGAGAACCTTGACTGG------AGAGGCCA---------------------------------------------------CAGGGCAAAA-GTGTGCTTCTTCAGATTAGCCTGGGCCAGGAGGGGACA-GGGAGCAAGGACGCCCTGGCTTCCGTGACACGGGTAGCTCCTTTCCCAAGGCTTCAGTGGTGGCAGG--TGTGGAC-GCTGGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119279380 296 + 128539186 AGGGGAGATACCCCCACTGGAACCACCT---GAGAGGCTTTTGAAACTGC---CTC--T----------TCTAAGACACAGCC-------C--------TTGCTGTGAGGACCCTGCTGCTGCTGGGAGCACTACATCAGGTGGGT----GGGCAGGCGGGC----GGCCTTGGGACCTGGGGCTGAGAACCTTGACTGG------AGAGGCCA---------------------------------------------------CAGGGCAAAA-GTGTGCTTCTTCAGATTAGCCTGGGCCAGGGGGGGACA-GGGAGCAAGGACGCCCTGGCTTCCGTGACACGGGTAGCTCCTTTCCCAAGGCTTCAGTGGTGGCAGG--TGTGGAC-GCTGGAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 630550 299 + 6255621 AGGGGAGATA-CCCCACTGGAACCACCT---GAGAGGCTTCTGAAACTGC---CTC--T----------TCTAAGACACAGCC-------C--------TTGCTGTGAGGACCCTGCTGCTGCTGGGAGCACTACATCAggtgggtgggcgggcaggcgggc----ggCCTTGGGACCGGGGGCTGAGAACCTTGACTGG------AGAGGCCA---------------------------------------------------CAGGGCAAAA-GTGTGCTTCTTCAGATTAGCCTGGGCCAGGAGGGGACA-GGGAGCAAGGACGCCCTGGCTTCCGTGACACGGGTAGCTCCTTTCCCAAGGCTTCAGTGGTGGCAGG--TGTGGAC-GCTGGAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4657035 296 - 8658521 AGGGGAGACACCCCCACTGGAACCACCT---GAGAGGCTTTTGAAACTGC---CTC--T----------TCTAAGAAACAGCC-------C--------TTGCTGTGAGGACCCTGCTGCTGCTGGGAGCACTACATCAGGTGGGT----GGGCAGGCGGGC----GGCCTTGGGACCTGGGGCTGAGAACCTTGACTGG------AGAGGCCA---------------------------------------------------CAGGGCAAAA-GTGTGCTTCTTCAGATTAGCCTGGGCCAGGAGGGGACA-GGGAGTGAGGCCGCCCTGGCTTCTGTGACACGGGTAGCTCCTTTCCCAAAGCTTCAGTGGTGGCAGG--TGTGGAC-ACTGGAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114863466 278 + 124281992 A-GGGAGATGGCCCCACCAGAACCACCT---GAGAGGCTTTTCACACTGC---CTC--C----------CCTGAGACCCAGCC-------C--------TTGCTGTGGAGACCCCGCTGCTGCTGAGAGCACTACAACA--------------------GGC----GGCCTTGGGACCTGGGGTTGAGAACCCTGACTGG------AGAGGCCA---------------------------------------------------CAGGGCAAGATGTGTGCTTCTTCAGATTCGCCTGGGCCAGGAGGAGACA-GAGAGCAAGGACG-CCAGGCTTCCATG-CACAGGGAGCTCCCTTCCCAAGGCTTCATTGATGGTAGG--TGTGGGT-GCTGGAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 502696 295 - 9212255 A-GGGAGATGCCCCCACCAGAACCACCT---GAGAGGCTTTTCACACTGC---CTC--C----------CCTGAGACCCAGCC-------C--------TTGCTGCGGGGACCTGGCTGCTGCTGAGAGCACTACAACAGGCAGGT----GGGTGGGCGGGC----GGCCTTGGGACCTGGGGTGGAGAACCCTGACTGG------AGAGGCCA---------------------------------------------------CAGGGCAAGATGTGTGCTGCTTCAGATTTGCCTGGGCCGGGAGGAGACA-GACAGCGAGGACGCCCGGGCTTCCATG-CACAGGGAGCTCCTTTCCCAAGGCTTCAGTGATGGGAGG--TGTGGGT-GCTGGAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2921686 295 + 4466143 A-GGGAGATGCCCCCACTGGAACCACCT---GAGAGGCTTTTCACACAGA---CTC--C----------CCTGAGGCCCAGCC-------C--------TTGCTGTGGGGACCCGGCTACTGCTGAGAGCACTACAACAGGCAGGT----GGGTGGGCGGGT----GGCTTTGGGGCCTGGGGTTGAGAACCCTGACTGG------AGAGGCCA---------------------------------------------------CAGGGCAAGATGTGTGCTTCTTTAGATTCGCCTGGGCCAGGAGGAGACA-CACAGCGAGGACGCCCAGGCTTCCATG-CACAGGGAGCTCCTTTCCCAAGGCTTCAGTGATAGCAGG--TGTGGGT-GCTGGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1624633 295 + 5364348 A-GGGAGATGTCCCCACCAGAACCACCT---GAGAGGCTTTTCACACTGC---CTC--C----------CCTGAGACCCCGCC-------C--------TTGCTGCGGGGACCCCGCTGCTGCTGAGAGCACTACAACAGGCGGGC----GGGTGGGCGGTT----GGCCTTGGGAACTGGGGTTGAGAACCCTGACTGG------AGAGGCCA---------------------------------------------------CAGGGCAAGATGTGTGCTGCTTCAGATTCACCTGGGCCAGGAGGAGACA-GACAGCAAGGACGCCCGGGCTTCCATG-CACAGGGAGCTCCTTTCCCAAGGCTTCAGTGATGGCAGG--TGTGGGT-GCTGGAG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4345260 264 + 7922563 AGGGCAGACG-CCCCACCAGAGCCTCATGAGGAGGGGCTTTC--CATTGC---CTCCAC----------ACTGAGATATACCC-------CGAAAACCATTACCATAGAGACCCTGCTACTGCTGAGAGGACCATACCAGGTGAGC----GGGT------------GGCCCTGAGACTCAGGGTTGAGAACGTCAAGTGG------AGAAGCCA---------------------------------------------------AAGGATAAAA-CTATGCATTTACAGATTAGCCTGGGCCAAGAGGGGACA-GGGAGGGAGGATGCCATGGTTTCCATGACATGGGGA----------------------------------GTGGAG-GCTG--G i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124837853 258 + 151834684 AGTGTATATGTTCCCATAAAACCCACCC---GGAGGTTTTTTCAAACAGCTCACTC--T----------GCTGAGATAGTACCTTATACAC--------CTTCAACAAAAGCCATA-TGCTACTGAGTGTGCCCTAAAAGGGTGGT----GAGGG-----------GGGCTTGGGACAGAGGCTTGAGAAC-------------------------------------------------------------------------------------TGGTGC------AGACTAGTCATGGCAAAAGGGGG----TGGTGTGAG---GCTCTGGCTCCTACAGTATGGGCAGCTCC-TCCCCAAGGCCTATGTCATGATGTG--TGTGTGT-GCGCGCG i mm10.chr5 I 1 I 39 s canFam3.chr26 33193213 304 - 38964690 GGGGGAGTTGCCCCCACCAGGACCAGCT---GAGAG--CTCTCCAACTGC---CCC--CATGGGAGACACGTTGGACACA-CT-------G--------TCACCTTGG-ACCCCTGCTACTGCTGA------------------------TGGTGGGTGTGT----GGCCTTGGGATTTAGGGCTGAGAACCTCGAGGGGCTCTCTAAAGGCCAGGGGAGGAGGAATCAGGCATACGAACTCCTTCCTCCTGTATGTAGAGGGTTCAGGGCAAGAATCATGCTTCTTCTGAACAGCCT-GGCCAGGACGGGGCATGGAAGTGAGGACACCCTGATTCCTGCAATGTGG--------------------------ATGGCAGG--GGTG----------- i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 884720 211 - 1116856 -------------------------------------------------------------------------------------------------------TGTAT--------CCACTGATGAGAGGGCTGTATCTG----------GGGTAGT---------GGCACTGGAAATTAGGGTTGAGAATTCTGACTAG------AGAGGCCC---------------------------------------------------TCGGGCAAGAATCACATTTCTTCAGCTTAGCCTGGGCTTAGAGGGGAGA-AGGAGTCAGGGTATGCCATTTTCCAGGATATGGATAACTTCTTTCCAAAAGTTTAAGTTACAGCAGGATTGTGGATAGGTGGAT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9506525 993 - 31815103 I e proCoq1.NW_012154285v1 6760786 543 - 9870158 I a score=484941.000000 s hg38.chr12_KI270834v1_alt 114751 44 + 119498 GTCCCTAGTGTCAGGCTGAAATCCTGTTCCTCTGCATTCCCACA s panTro5.chr12 127400344 44 + 137163284 GTCCCCAGTGTCAGGTTGAAATCCTGTTCCTCTGCATTCCCAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125750648 44 + 135337776 GTCCCCAGTGTCAGGTTGAAATCCTGTTCCTCTGCATTCCCACA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8264224 44 - 8369578 GTCCCCAGTGTCAGGTTGAAATCCTATTCCTCTGCATTCCCACA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97922272 44 + 106955855 GTCCCCAATGTCAAGTTGAAATCCTGTTCCTCTGCATTCCCACA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124037331 44 + 133663169 GTCTCCAACGTCAGGTTGAAACCCTGTTCCTCTGCATTCCCAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128285522 44 + 137757926 GTCTCCAACGTCAGGTTGAAACCCTGTTCCTCTGCATTCCCAGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684013 44 - 16319837 GTCTCCAACGTCAGGTTGAAACCCTGTTCCTCTGCATTCCCAGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12307918 44 + 20526591 GTCTCCAACGTCAGGCTGAAACCCTGTTCCTCTGCATTCCCCGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119279676 44 + 128539186 GTCTCCAATGTCAGGCTGAAACCCTGTTCCTCTGCATTCCCAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 630849 44 + 6255621 GTCTCCAATGTCAGGTTGAAACCCTGTTCCTTTGCATTCCCCGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4657331 44 - 8658521 GTCCCCAATGTCAGGTTGAAACCCTGTTCCTCTGCATTCCCAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114863744 44 + 124281992 GTCCCCAATGTCAGGTTGAAATCCTGTGCCCCTGCATTCCTGGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 502991 44 - 9212255 GTCCCCAATGTCAGGTTGAAATCCCGTTCCCCCGCATTCCCGGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2921981 44 + 4466143 GTCCCCAATGTCAGGTTGAAATCCTGTTTCCCTGCATTTCTGGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1624928 44 + 5364348 GTCCCCAAAGTCAGGTTGAAATCCTGTTCCCCTGCATTCCCGGA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4345524 35 + 7922563 GCCCCCAACATTAGGTTGAAA---------TCTGGATTTCTGGA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33193517 30 - 38964690 -----------CAG---GACACCCTATTCTCCTGAATCCATGGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 884931 44 - 1116856 GATGCTGTCTTCAGGTTGAAATCCTGTTCTCCTGAATTCCCACA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9506525 993 - 31815103 I e mm10.chr5 124838111 39 + 151834684 I e proCoq1.NW_012154285v1 6760786 543 - 9870158 I a score=1070808.000000 s hg38.chr12_KI270834v1_alt 114795 105 + 119498 GGCCCAGCTCCCAGTCCCAGGGCTT-CGGGGGAG----------GTCCCTGG--TATCCCTCC---AC-AGGGAGACTTCTGAGGACAGGCTCCCATTCCACCACCCCAAGAAGCCCACGGC- s panTro5.chr12 127400388 105 + 137163284 GGCCCAGCTCCCAGTCCCAGGGCTT-CGGGGGAG----------GTCCCTGG--TGTCCCTCC---AC-AGGGAGACTTCTGAGGACAGCCTCCCATTCCACCACCCCAAGAAGCCCACGGC- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125750692 105 + 135337776 GGCCCAGCTCCCAGTCCCAGGGCTT-CGGGGGAG----------GTCCCTGG--TGTTCCTCC---AC-AGGGAGACTTCTGAGGACAGCCTCCCATTCCACCACCCCAAGAAGCCCACGGC- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8264268 105 - 8369578 GGCCCAGCTCCCAGTCCCAGGGCTT-CGGGGGAG----------GTCCCTGG--TGTCCCTCC---AC-AGGGAGACTTCTGAGGACAGGCTCCCATTCCACCACCCCAAGAAGCCCACGGC- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97922316 104 + 106955855 GGCCCAGCTCCCAGTCCCAGGGCTT-CGGGGGAG----------GTCCCTGG--TGTCCCTCC---AC-AGGGAGACTTCTGAGGACAGGCTCCTGTTCC-CCACCCCAAGAAGCCCACGGC- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124037375 105 + 133663169 GGCCCAGCTCCCGGTCCCAGGGCTT-CGGGGGAG----------GTCCCTGG--TGTCCCTCC---GC-AGGGAGACTTCTGAGGACAGCCTCCTGTTCTTCCACCCCAAGAAGCCCATGGC- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128285566 105 + 137757926 GGCCCAGCTCCCGGTCCCAGGGCTT-CGGGGGAG----------GTCCCTGG--TGTCCCTCC---GC-AGGGAGACTTCTGAGGACAGCCTCCTGTTCTTCCACCCCAAGAAGCCCATGGC- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684057 105 - 16319837 GGCCCAGCTCCCGGTCCCAGGGCTT-CGGGGGAG----------GTCCCTGG--TGTCCCTCC---GC-AGGGAGACTTCTGAGGACAGCCTCCTGTTCTTCCACCCCAAGAAGCCCATGGC- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12307962 105 + 20526591 GGCCCAGCTCCCGGTCCCAGGGCTT-CGGGGGAG----------GTCCCTGG--TGTCCCTCC---GC-AGGGAGACTTCTGAGGACAGCCTCCTGTTCTTCCACCCCAAGAAGCCCATGGC- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119279720 105 + 128539186 GGCCCAGCTCCTGGTCCCAGGGCTT-CGGGGGAG----------GTCCCTGG--TGTCCCTCC---GC-AGGAAGACTTCTGAGGACAGCCTCCTGTTCTTCTACCCCAAGAAGCCCATGGC- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 630893 105 + 6255621 GGCCCAGCTCCCGGTCCCAGGGCTT-CGGGGGAG----------GTCCCTGG--TGTCCCTCC---GC-AGGGAGACTTCTGAGGACAGCCTCCTGTTCTTCCACCCCAAGAAGCCCATGGC- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4657375 105 - 8658521 GGCCCAGCTCCCGGTCCCAGGGCTT-CAGGGGAG----------GTCCGTGG--TGTCCCTCC---GC-AGGGAGACTTCTGAGGACAGGCTCCTGTTCCACCACCCCAAGAAGCCCATGGC- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114863788 102 + 124281992 GGCCCAGCCACCAGTCCCAGTGCTT-CGGGGGAG----------GTCCCTG-----TCCCTCC---AC-AGGAAGACTCCTGAGGACAGGCTCCTGTTCCACCACCCTGAGAAGGCCATGGC- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503035 102 - 9212255 GGCCCAGCTACCAGTCCCAGTGCTT-CAGGGGAG----------GTCCCTG-----TCCCTCC---AC-AGGGAGACTCCTGAGGACAGGCTACTGTTCCACCACCCCGAGAAGCTCACGGT- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922025 102 + 4466143 GGCCCAGCCACCAGTCCCAGCGCTT-TGGGGGAG----------GTCCCTG-----TCCCTCC---AC-AGGGAGACTCCTGGGGACAGGCTCCTGTTCCAGCACCCTGAGAAGCCCACGGC- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1624972 102 + 5364348 GGCCCAGCCACCAGTCCCAGCACTT-TGGGGGAG----------GTCCCTG-----TCCCTCC---AC-AGGGAGACTCCTGAGGACAGGCTCCTGTTCCACCACCCCGAGAACCCCACGGC- i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4345559 105 + 7922563 GGCCCAACTCCTGGCCTCAGGGCCTATGGGACGG----------AATCCTGG--TATCCCTCCTCTAT-AGGCAGAA-CCTGAGGGTCGGCTCCTGTTGCAA-GCCCTTAGAAGTC--TGGC- i otoGar3.GL873618 C 0 I 3 s mm10.chr5 124838150 88 + 151834684 GGTATAGACCCGAGTTCC--------TGGCAGAG----------GACTCGGG--TGTCTTTGC---TCTAGAGAGACTTAT--GGTCAGGCTCCTGCTCC---------AAGGGCCCTCTGC- i mm10.chr5 I 39 C 0 s canFam3.chr26 33193547 79 - 38964690 AGCCCACATCCTGG-CCCAGGGATA-TGGGGGTGAGGGGGGAGAGAACCTGG-------CAGC---AT-AGGGTGGGCTCTG------GTCTCCAGGC------------------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 884975 106 - 1116856 GGCCCAGCTCCTGG-CCCAGGGCTG-CTGAGGAG----------GTTCTGGCCTCATGCTTCT---CC-AGAAAGACTCC-GGTATCAGGCTCCTCTACCGAGGCCCCGAGAAGCTTAAGGGT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9506525 993 - 31815103 I e proCoq1.NW_012154285v1 6760786 543 - 9870158 I a score=1518982.000000 s hg38.chr12_KI270834v1_alt 114900 122 + 119498 GCCTTCCCTACCACACGCAGACAAAAAGATGTCTGGGCTCCTGGGTGGCGCACTCAGGAGGCTGTAATATGAGCAAT-GCAAATGGAAAAAAATCAGTGCTCGGTAATCCACTAAGGCT--TGGT s panTro5.chr12 127400493 122 + 137163284 GCCTTCCCTACCACACGCAGACAAAAAGATGTCTGGGCTCCTGGGTGGCGCACTCAGGAGGCTGTAATATGAGCAAT-GCAAATGGAAAAAAATCAGTGCTCGGTAATCCGCTAAGGCT--TGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125750797 122 + 135337776 ACCTTCCCTACCACACGCAGACAAAAAGATGTCTGGGCTCCTGGGTGGCGCACTCAGGAGGCTGTAATATGAGCAGT-GCAAATGGAAAAAAATCAGTGCTCGGTAATCCGCTAAGGCT--TGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8264373 122 - 8369578 ACCTTCCCTACCACACACAGACAAAAAGATGTCTGGGCTCCTGGGTGGCACACTCAGGAGGCTGTAATATGAGCAAT-GCAAATGGAAAAAAATCAGTGCTCGGTAATCTGCTAAGACT--TGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97922420 122 + 106955855 GCCTTCCCTACCATACGCCGACAAAAAGATGTCTGGGCTCCTGAGTGGCGCACTCAGGAGGCTGTAATATGAGCAAT-GCAAATGGAAAAACATTAGTGCTCGGTAATCCGCTAAGGCT--TGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124037480 121 + 133663169 GCCTTCCCTACCACACACAGACAGAAAGACGTCTGGGCTCCTCAGAGGCACACTCAGGAGGCTGTAATATGAGCAAT-GCAAATGG-AAAATATCAGTGCTCGGTAATCCGCTAAGGCT--TGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128285671 121 + 137757926 GCCTTCCCTACCACACACAGACAGAAAGACGTCTGGGCTCCTCAGAGGCACACTCAGGAGGCTGTAATATGAGCAAT-GCAAATGG-AAAATATCAGTGCTCGGTAATCCGCTAAGGCT--TGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684162 121 - 16319837 GCCTTCCCTACCACACACAGACAGAAAGACGTCTGGGCTCCTCAGAGGCACACTCAGGAGGCTGTAATATGAGCAAT-GCAAATGG-AAAATATCAGTGCTCGGTAATCCACTAAGGCT--TGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308067 121 + 20526591 GCCTTCCCTACCACACACAGACAGAAAGACGTCTGGGCTCCTCAGAGGCACACTCAGGAGGCTGTAATATGAGCAAT-GCAAATGG-AAAATATCAGTGCTCGGTAATCCGCTAAGGCT--TGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119279825 121 + 128539186 GCCTTCCCTACCACACACAGACAAAAAGACGTCTGGGCTCCTCAGAGGCACACTCAGGAGGCTGTAATATGAGCAAT-GCAAATGG-AAAATATCAGTGCTCGGTAATCCGCTAAGGCT--TGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 630998 121 + 6255621 GCCTTCCCTACCACACACAGACAGAAAGACGTCTGGGCTCCTCAGAGGCACACTCAGGAGGCTGTAATATGAGCAAT-GCAAATGG-AAAATATCAGTGCTCGGTAATCCGCTAAGGCT--TGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4657480 122 - 8658521 GCCTTCCCTACCACACACAGACAAAAAGACGTCTGGGCTCCTGAGAGGCACACTCAGAAGGCTGTAATATGAGCAAT-GCAAATGGAAAAAAATTAGTGCTCGGTAATGCGCTAAGGAG--TGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114863890 121 + 124281992 GCCTTCCCTACCACACAGAGACAAAATGATGTCCGGGCTCCTGAAAGGCGCCCTCAGGAGGCTGTAATATGAGCAGT-GCAAATGGAAAAACATCAGTGCTTGGTAAT-CGCTAAGGCT--TGGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503137 122 - 9212255 GCCTTCCCTACCACACAGAGACAAAATGATGTCTGGGCTCCTGAAAGGCGCACTCAGGAGGCTGTAATATGAGCAGT-GCAAATGGAAAAACATCAGTGCTTGGTAATCCGCTAAGGGT--TGGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922127 121 + 4466143 GCCTTTCCTACCACACAGAGGCAAATTGATGCCTGGGCTCCTGAAAGGCGCACTCAGGAGGCTGTAATATGAACAGT-GCAAAT-GAAAAACATCAGTGCTTCGTGATCCGCTAAGGCT--TGGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625074 122 + 5364348 GCCGTCCCTACCACACAGAGACAAAATGATGTCTGGGCTCCTGAAAGGCGCACTCAGGAGGCTGTAATATGAGCAGT-GCAAATGGAAAAACATCAGTGCTTGGTAATCCACTAAGGCT--TGGT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9507518 118 - 31815103 GCCTTCTCCACCACACGCAGACAAATAGACTTCTTGGCTCCTGAAAGGAGCACTTAGGAGACTGTAATATGAGTAAC-GCCAATGG--AAAACTCGGTGCTCGCTAATCCGCCAAGACTCT---- i micMur3.chr21 I 993 C 0 s otoGar3.GL873618 4345667 116 + 7922563 GCCTTCTCTACCACACACAGATGAAAAGATGTCCTGGCTCCTGAAAGGAGCACTTAAGAGACTGTAATGTGAATTAC-ACAAGGGG--AAAACTCAGTGCTCAGTAATACACCAGAACT------ i otoGar3.GL873618 I 3 C 0 s mm10.chr5 124838238 70 + 151834684 ---------ACCATCC--AGACAAAA------------CCATGACAAGTGTGCCTAGGAG--------ATGGGCCAG-ATAAACAA----------ATGCTCAGC----------GGCT--TAG- i mm10.chr5 C 0 C 0 s canFam3.chr26 33193626 117 - 38964690 TCCTCCTCTGCCACAC--AGACAAAAGGACATCTGGGCCCCTGAAAGGTATCCTTAGGAGACTGTAACCTGAGTGCC-ACGAATGG--AAAAGTCAGTGCTTGGTCATGCACTGAGACC--CAT- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 885081 120 - 1116856 GCCTTCTTGACCACACACAGTCCAAAAGAT-TCTTGGCTTCTGAGAGGAGCACTTAGGAGACTGTAATATGAGTCATGGCAAATGG--TAAAATCCATACTTGGTAATATACTAAAACC--TGAT i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6760786 543 - 9870158 I a score=906075.000000 s hg38.chr12_KI270834v1_alt 115022 56 + 119498 GGAAATGGTCTGTGTCTTTTACAAGGAACTGGACACTCTCATGAATAGTAACTGCC s panTro5.chr12 127400615 56 + 137163284 GGAAATGGTCTGTGTCTTTTACAAGGAACTGGACACTCTCATGAATAGTAACTGCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125750919 56 + 135337776 GGAAATGGTCTGTGTCTTTTACAAGGAACTGGACACTCTCATGAATAGTAACTACC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8264495 56 - 8369578 GGAAATGGTCTGTGTCTTTTACAAGGAACTGGACACTCTCATGAATAGTAACTGCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97922542 56 + 106955855 GGAAATGGTCTGTGTCTTTTACAAGGAACTGGACACTCTCATGAATAATAACTGCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124037601 56 + 133663169 GGAAATGGTCCGTGTCTTTGACAAGGAACTGGACACTCTCAGGAATGATAACTGCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128285792 56 + 137757926 GGAAATGGTCCGTGTCTTTGACAAGGAACTGGACACTCTCAGGAATGATAACTGCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684283 56 - 16319837 GGAAATGGTCCGTGTCTTTGACAAGGAACTGGACACTCTCAGGAATGATAACTGCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308188 56 + 20526591 GGAAATGGTCCGTGTCTTTGACAAGGAACTGGACACTCTCAGGAATGGTAACTGCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119279946 56 + 128539186 GGAAATGGTCCGTGTCTCTGATAAGGAACTGGACACTCTCAGGAATAATAACTGCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631119 56 + 6255621 GGAAATGGTCTGTGTCTTTGACAAGGAACTGGACACTCTCAGGAATGGTAACTGCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4657602 56 - 8658521 GGAAATGGTCCGTGTCTTTGACAAGGAACTGGACACTCTCAGGAATAATAACTGCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864011 56 + 124281992 GGAAATGGTCCGTGTCTTTTATAAAGAACTGGACACTCTCATGAATAGTAACTACC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503259 54 - 9212255 GGAAATGGTCCGTGTCTTTTACAAAGAACTGGACA--CTCATGAATAATAACTACC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922248 56 + 4466143 GGAAATGGTCCGTGTCTTTTACAAAGAACTGGACACTCTCATGAATAATAACTGCG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625196 56 + 5364348 GGAAATGGTCCGTGTCTTTTACAAAGAACTGGACACTCTCATGAGTAATAACTACC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9507636 56 - 31815103 GCAAATAGGCCATGTCTTTTACAAGGGAGTGGACACTCTCATGAATAATAACTGCC i micMur3.chr21 C 0 I 95 s proCoq1.NW_012154285v1 6761329 56 - 9870158 GGAAATAGTCCGTGTCTCTCACAAGGACTTGGACACTCTCATGAATAATAACTGCC i proCoq1.NW_012154285v1 I 543 C 0 s otoGar3.GL873618 4345783 56 + 7922563 GGAAATAGTCCATGTTTTTTACAAGGAATTGGACGCTCTTGTGAATAATAACTACC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124838308 52 + 151834684 GGGAGTGACTTGAGGCTTCGACAAAGA-CTGGACTCTCACA-GAGCACC--CTGCC i mm10.chr5 C 0 C 0 s canFam3.chr26 33193743 55 - 38964690 -GGAAAGGTCTGTGTCTGTCATTGGGACTCGGACACACTCATGAATAATGACTGCC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 885201 56 - 1116856 GGGAATGGTCCATGTCTTTTATAAGGAATTGGATACTCTCATGACTAATAACTGCC i dasNov3.JH568189 C 0 C 0 a score=213873.000000 s hg38.chr12_KI270834v1_alt 115078 14 + 119498 ATTGTGAGGCCTGT s panTro5.chr12 127400671 14 + 137163284 ATTGTGAGGCCTGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125750975 14 + 135337776 ATTGTGAGGCCTGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8264551 14 - 8369578 ATTGTGAGGCCTGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97922598 14 + 106955855 ATTGTGAGGCCTGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124037657 14 + 133663169 ATTGTGAGGCCTGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128285848 14 + 137757926 ATTGTGAGGCCTGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684339 14 - 16319837 ATTGTGAGGCCTGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308244 14 + 20526591 ATTGTGAGGCCTGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280002 14 + 128539186 ATTGTGAGGCCTGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631175 14 + 6255621 ATTGTGAGGCCTGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4657658 14 - 8658521 ATTGTGAGGCCTGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864067 14 + 124281992 ATTGTGAGGCCTGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503313 14 - 9212255 ATTGTGAGGCCTGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922304 14 + 4466143 ATTGTGAGGCCTGT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625252 14 + 5364348 ACTGTGAGGCCTGT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6761385 14 - 9870158 CTTGGGAAGCCGAT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4345839 14 + 7922563 ATCGTGAAGCCTAT i otoGar3.GL873618 C 0 I 24 s mm10.chr5 124838360 14 + 151834684 TTCGTAAAGCTTGG i mm10.chr5 C 0 C 0 s canFam3.chr26 33193798 14 - 38964690 GTTGTGCAGCCTAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 885257 14 - 1116856 ATTGTGAAGCTGAC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9507692 95 - 31815103 I a score=109937.000000 s hg38.chr12_KI270834v1_alt 115092 7 + 119498 TTAGAAA s panTro5.chr12 127400685 7 + 137163284 TTAGAAA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125750989 7 + 135337776 TTAGAAA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8264565 7 - 8369578 TTAGAAA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97922612 7 + 106955855 TTAGAAA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124037671 7 + 133663169 TTAGAAA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128285862 7 + 137757926 TTAGAAA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684353 7 - 16319837 TTAGAAA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308258 7 + 20526591 TTAGAAA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280016 7 + 128539186 TTAGAAA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631189 7 + 6255621 TTAGAAA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4657672 7 - 8658521 TTAGAAA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864081 7 + 124281992 TTAGAAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503327 7 - 9212255 TTAGAAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922318 7 + 4466143 TTAGAAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625266 7 + 5364348 TTAGAAA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6761399 7 - 9870158 TTAGAAA i proCoq1.NW_012154285v1 C 0 I 43 s mm10.chr5 124838374 7 + 151834684 TTAGGGG i mm10.chr5 C 0 C 0 s canFam3.chr26 33193812 7 - 38964690 TTAGGAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 885271 7 - 1116856 TTAGAAC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9507692 95 - 31815103 I e otoGar3.GL873618 4345853 24 + 7922563 I a score=62964.000000 s hg38.chr12_KI270834v1_alt 115099 4 + 119498 AAGG s panTro5.chr12 127400692 4 + 137163284 AAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125750996 4 + 135337776 AAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8264572 4 - 8369578 AAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97922619 4 + 106955855 AAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124037678 4 + 133663169 AAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128285869 4 + 137757926 AAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684360 4 - 16319837 AAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308265 4 + 20526591 AAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280023 4 + 128539186 AAGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631196 4 + 6255621 AAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4657679 4 - 8658521 AAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864088 4 + 124281992 AAGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503334 4 - 9212255 AAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922325 4 + 4466143 AAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625273 4 + 5364348 AAGG i aotNan1.NW_018491581v1 C 0 C 0 s mm10.chr5 124838381 4 + 151834684 AAAG i mm10.chr5 C 0 I 27 s canFam3.chr26 33193819 4 - 38964690 AAGG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 885278 4 - 1116856 AAGG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9507692 95 - 31815103 I e proCoq1.NW_012154285v1 6761406 43 - 9870158 I e otoGar3.GL873618 4345853 24 + 7922563 I a score=27013.000000 s hg38.chr12_KI270834v1_alt 115103 2 + 119498 CA s panTro5.chr12 127400696 2 + 137163284 CA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751000 2 + 135337776 CA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8264576 2 - 8369578 CA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97922623 2 + 106955855 CA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124037682 2 + 133663169 CA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128285873 2 + 137757926 CA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684364 2 - 16319837 CA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308269 2 + 20526591 CA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280027 2 + 128539186 CA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631200 2 + 6255621 CA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4657683 2 - 8658521 CA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864092 2 + 124281992 CA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503338 2 - 9212255 CA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922329 2 + 4466143 CA i cebCap1.NW_016107484v1 C 0 I 1 s aotNan1.NW_018491581v1 1625277 2 + 5364348 CA i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33193823 1 - 38964690 -A i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 885282 2 - 1116856 CA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9507692 95 - 31815103 I e mm10.chr5 124838385 27 + 151834684 I e proCoq1.NW_012154285v1 6761406 43 - 9870158 I e otoGar3.GL873618 4345853 24 + 7922563 I a score=28362.000000 s hg38.chr12_KI270834v1_alt 115105 5 + 119498 --TTGTG s panTro5.chr12 127400698 5 + 137163284 --TTGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751002 5 + 135337776 --TTGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8264578 5 - 8369578 --TTGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97922625 5 + 106955855 --TTGTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124037684 5 + 133663169 --TTGTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128285875 5 + 137757926 --TTGTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684366 5 - 16319837 --TTGTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308271 5 + 20526591 --TTGTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280029 5 + 128539186 --TTGTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631202 5 + 6255621 --TTGTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4657685 5 - 8658521 --TTGTG i colAng1.NW_012116043v1 C 0 C 0 s dasNov3.JH568189 885284 5 - 1116856 TCTTG-- i dasNov3.JH568189 C 0 I 5 e micMur3.chr21 9507692 95 - 31815103 I e mm10.chr5 124838385 27 + 151834684 I e proCoq1.NW_012154285v1 6761406 43 - 9870158 I e canFam3.chr26 33193824 1 - 38964690 I e otoGar3.GL873618 4345853 24 + 7922563 I e aotNan1.NW_018491581v1 1625279 0 + 5364348 C e cebCap1.NW_016107484v1 2922331 1 + 4466143 I e saiBol1.JH378194 503340 0 - 9212255 C e calJac3.chr9 114864094 0 + 124281992 C a score=2720215.000000 s hg38.chr12_KI270834v1_alt 115110 488 + 119498 GGGAATGGAGAAG---TTCTTCAAAGTTTCTTGAAACCATAAAGAGCTTGTCATTTCCTTGCTCTATGTATATCTCTATATATGTTCCAGTGTAGCTGCTCCGCCttgccccggcacgcctgcgcagggctgagcgagccctggaccatagtgcatgctcttccttatttggaaactctcctgaccctctcatgactagcttcctcttttctttgtcctctttcccttttgcctatttaggaaagtttcaagctgttagccaatcgggtcaagcttagaatgtgaggtcccattccagtcaatggaaactggacacagtcatagggcaattgcatcaggttatgaagattataaatgtcctcgtctcctttg-tttgagtgtgctctcgtggtaagactgctggcgagttgcaccctttctgcagaaagtaaactagccttgctgagCCATCCATTGCCT-----------TCCCGACGTGATAAACCCGTTTCCAACAGGTG s panTro5.chr12 127400703 489 + 137163284 GGAAATGGAGAAG---TTCTTCAAAGTTTCTTGAAACCATAAAGAGCTTGTCATTTCCTTGCTCTATGTATGTCTCTATATATGTTCCAGTGTAGCTGCTCCGCCttgccccgacacgcctgcacagggctgagtgagccctggaccatagtgcatgctcttccttatttggaaactctcctgaccctctcatgactagcttcctcttttctttgtcctctttcccttttgcctatttaggaaagtttcaagctgttagccaatcgggtcaagcttagaatgtgaggtcccattccagtcaatggaaactggacacagtcatagggcaactgcatcaggttatgaagattataaatgtcctcgtctcctttgttttgagtgtgctctcgtggtgagactgctggcgagttgcaccctttctgcagaaagtaaactagccttgctgagCCATCCATTGCCT-----------TCCCGACGTGATAAACCCGTTTCCAACAGGTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751007 488 + 135337776 GGGAATGGAGAAG---TTCTTCAAAGTTTCTTGAAACCATAAAGAGCTTGTCATTTCCTTGCTTTATGTATGTCTCTATATATGTTCCAGTGTAGCTGCTCCGCCttgccccggcacgcctgcacagggctgagtgagccctggaccatagtgcatgctcttccttatttggaaactctcctgaccctctcatgactagcttcctcttttctttgtcctctttcccttttgcctatttaggaaagtttcaagctgttagccaatcgggtcaagcttagaatgtgaggtcccattccagtcaatggaaactggacacagtcatagggcaactgcatcaggttatgaagattataaatgtcctcgtctcctttg-tttgagtgtgctctcgtggtgagactgctggcgagttgcaccctttctgcagaaagtaaactagccttgctgagCCATCCATTGCCT-----------TCCTGACGTGATAAACCCGTTTCCAACAGGTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8264583 487 - 8369578 GGGAATGGAGAAG---TTCTTCAACATTTCTTGAAACCATAAAGAGCTTGTCATTTCCTTGCTCTATGTATATCTCTATATATGTTCCAGTGTAGCTGCTCCGAC-tgccccggcatgcctgcgcagggctgagtgagccctggaccatggtgcacgctattccttatttggaaactctcctgaccctctcatgactagcttcctcttttctttgtcctctttcccttttgcctatttaggaaagtttcaagctgttagccaatcgggtcaagcttagaatgtgaggtcccattccagtcaatggaaactggacacagtcatagggcaattgcatcaggttatgaagattataaatgtcctcatctcctttg-tttgagtgtgctctcgtggtgagactgctggcgagttgcaccctttctgcagaaagtaaactagccttgctgagCCATCCATTGCCT-----------TCCCGACGTGATAAACCCGTTTCCAACAGGTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97922630 488 + 106955855 GGGAATGGATAAG---TTCTTCAAAGTTTCTTGAAACCATAAAGAGCTTGTCATTTCCTTACTCTATGTATATCTCTATATATGTTCCAATGCAGCTGCTCTGacttgccccggcatgcctggacagggctaagtgagccctggaccatagtgcatgctattccttttttggaaactctcctgaccctctcatgactagcttcctcttctctttgtcctctttcccctttgcctctttaggaaagtttcaagctgttagccaatcgggtcaagcttagaatgtgaggtcccattctggccaatggaaatgggacacagtcatagggcaattgcatcaggttatgaagattataaacgtccttgtctcctttg-ttcaagtgtgctcttgtggcgagactgctggcgagttgcaccttttctgcagaaagtaaactagccttgctgagCCATCCATTGCCT-----------TCCTGACGTGATAAACCCGTTTCCAACAGGTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124037689 495 + 133663169 GGG-ATGCAGAAGTTCTTCTTCAAAGTTTCTTGAAACCATGAAGAGCTTGTCATTTCCTTGCTCTATGTGTATCTCTATGTATGTTCCCATGCAGCTgctctgacttgccccagcatgcctggacaaggctaaatgagccctggaccatagtacatgctattccttatttggaaaccctcctgaccctctcatgactagcttcctcttttcttagtcctctttcccgtttgcctatttaggaaagtttcaagcttttaaccaatcgggttaagc------tgcgaggtcccattccggccaatggaaatgggacacagtcatagggcaactgcatcaggttatgaagattagaaatgtcctcgtctcctttg-ttcgagtgtgctcttgtggcgagactgctggcgagttgcaccctttctgcagaaagtaaactagccttgctgagccatccattgccttggtgtgttcttcccgacgtgataaacccgtttccaacaGGCG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128285880 495 + 137757926 GGG-ATGCAGAAGTTCTTCTTCAAAGTTTCTTGAAACCATGAAGAGCTTGTCATTTCCTTGCTCTATGTGTATCTCTATGTATGTTCCCATGCAGCTGCTCTGacttgccccagcatgcctggacaaggctaaatgagccctggaccatagtacatgctattccttatttggaaaccctcctgaccctctcatgactagcttcctcttttcttagtcctctttcccgtttgcctatttaggaaagtttcaagcttttaaccaatcgggttaagc------tgcgaggtcccattccggccaatggaaacgggacacagtcatagggcaactgcatcaggttatgaagattagaaatgtcctcgtctcctttg-ttcgagtgtgctcttgtggcgagactgctggcgagttgcaccctttctgcagaaagtaaactagccttgctgagccatccattgccttggtgtgttcttcCCGACGTGATAAACCCGTTTCCAACAGGCG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684371 495 - 16319837 GGG-ATGCAGAAGTTCTTCTTCAAAGTTTCTTGAAACCATGAAGAGCTTGTCATTTCCTTGCTCTATGTGTATCTCTATGTATGTTCCCATGCAGCTGCTCTGacttgccccagcatacctggacaaggctaaatgagccctggaccatagtacatgctattccttatttggaaaccctcctgaccctctcatgactagcttcctcttttcttagtcctctttcccgtttgcctatttaggaaagtttcaagcttttaaccaatcgggttaagc------tgcgaggtcccattccggccaatggaaacgggacacagtcatagggcaactgcatcaggttatgaagattagaaatgtcctcgtctcctttg-ttcgagtgtgctcttgtggcgagactgctggcgagttgcaccctttctgcagaaagtaaactagccttgctgagccatccattgccttggtgtgttcttcCCGACGTGATAAACCCGTTTCCAACAGGCG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308276 495 + 20526591 GGG-ATGGAGAAGTTCTTCTTCAAAGTTTCTTGAAACCATGaagagcttgtcatttccttgctctatgtatatctctatgtatgttcccatgcagctgctctgacttgccccagcatgcctggacaaggctaaatgagccccggaccatagtacatgctattccttatttggaaaccctcctgaccctctcatgactagcttcctcttttcttagtcctctttcacctttgcctatttaggaaagtttcaagcttttaaccaatcgggttaagc------cgcgagatcccattccggccaatggaaacgggacacagtcatagggcaactgcatcaggttatgaagattagaaatgtcctcgtctcctttg-ttcgagtgtgctcttgtggcgagactgctggcgagttgcaccctttctgcagaaagtaaactagccttgctgagccatccattgccttggtgtgttcttcCCGACGTGATAAACCCGTTTCCAACAGGCG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280034 501 + 128539186 GGG-ACGGAGAAGTTCTTCTTCAAAGTTTCTTGAAACCATGaagagcttgtcatttccttgctctatgtatatctctatgtatgttcccatgcagctgctctgacttgccccagcatgcctggacaaggctaaatgagccctggaccatagtacatgctattccttatttggaaaccctcctgaccctctaatgactagcttcctcttttcttagtcctctttcccctttgcctatttaggaaagtttcaagcttttaaccaatcgggttaagcttagaatgtgaggtcccattccggccaatggaaacgggacacagtcatagggcaactgcatcagggtatggagattagaaatgtcctcgtctcctctg-ttcgagtgtgctctcgtggtgagactgctggcgagttgcaccctttctgcagaaagtaaactagccttgctgagccatccattgccttggtgtgttcttcctgacgtgataaacccgtttccaacaGGCG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631207 495 + 6255621 GGG-ATGGAGAAGTTCTTCTTCAAAGTTTCTTGAAACCATGaagagcttgtcatttccttgctctatgtatatctctatgtatgtttccatgcagctgctctgacttgccccagcatgcctggacaaggctaaatgagccccggaccatagtacatgctattccttatttggaaaccctcctgaccctctcatgattagcttcctcttttcttagtcctctttcccctttgcctatttaggaaagtttcaagcttttaaccaatcgggttaagc------cgcgaggtcccattccggtcaatggaaaggggacacagtcatagggcaactgcatcaggttatgaagattagaaatgtcctcgtctcctttg-ttcgagtgtgctcttgtggcgagactgctggcgagttgcaccctttctgcagaaagtaaactagccttgctgagccatccattgccttggtgtgttcttcctgacgtgataaacccgtttccaacaGGCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4657690 499 - 8658521 GGG-ATGGAGAAGTTCTTCTTCAAAGTCTCTTGAAACCATaaagagcttgtcatttccttgctctatgtatgtctctatgtatgttcccatgcagctgctctgacttgccccagcatgcctggacagggctaagtgagccccagaccatagtacatgctgttccttatttggaaaccctcctgagcctctcatgactagcctcctctcttcttagtcctctttcccctttgcctatttaggaaaatttcaagcttttagccaatcgggttaagcttagaatgtgaggtcccattccagccaatggaaacgggacacagtcatagggcaactgcatcaggttatgaagattataaacgtcctcgtctcctttg-ttcgagtgtgctc--gtggcgagactgctggcgagttgcaccctttctgcagaaagtaaactagccttgctgagccatccattgccttggtgtgttcctcctgacgtgataaacccgtttccaacaGGCG i colAng1.NW_012116043v1 C 0 C 0 e micMur3.chr21 9507692 95 - 31815103 I e mm10.chr5 124838385 27 + 151834684 I e proCoq1.NW_012154285v1 6761406 43 - 9870158 I e dasNov3.JH568189 885289 5 - 1116856 I e canFam3.chr26 33193824 1 - 38964690 I e otoGar3.GL873618 4345853 24 + 7922563 I e aotNan1.NW_018491581v1 1625279 0 + 5364348 C e cebCap1.NW_016107484v1 2922331 1 + 4466143 I e saiBol1.JH378194 503340 0 - 9212255 C e calJac3.chr9 114864094 0 + 124281992 C a score=10920.000000 s hg38.chr12_KI270834v1_alt 115598 1 + 119498 T s panTro5.chr12 127401192 1 + 137163284 T i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751495 1 + 135337776 T i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265070 1 - 8369578 T i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923118 1 + 106955855 T i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038184 1 + 133663169 T i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286375 1 + 137757926 T i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684866 1 - 16319837 T i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308771 1 + 20526591 T i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280535 1 + 128539186 T i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631702 1 + 6255621 T i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658189 1 - 8658521 T i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864094 1 + 124281992 T i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503340 1 - 9212255 T i saiBol1.JH378194 C 0 C 0 s aotNan1.NW_018491581v1 1625279 1 + 5364348 T i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33193825 1 - 38964690 T i canFam3.chr26 I 1 C 0 e micMur3.chr21 9507692 95 - 31815103 I e mm10.chr5 124838385 27 + 151834684 I e proCoq1.NW_012154285v1 6761406 43 - 9870158 I e dasNov3.JH568189 885289 5 - 1116856 I e otoGar3.GL873618 4345853 24 + 7922563 I e cebCap1.NW_016107484v1 2922331 1 + 4466143 I a score=94232.000000 s hg38.chr12_KI270834v1_alt 115599 8 + 119498 CTCTGCAC s panTro5.chr12 127401193 8 + 137163284 CTCTGCAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751496 8 + 135337776 CTCTGCAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265071 8 - 8369578 CTCTGCAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923119 8 + 106955855 CTCTGCAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038185 8 + 133663169 CTCTGCAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286376 8 + 137757926 CTCTGCAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684867 8 - 16319837 CTCTGCAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308772 8 + 20526591 CTCTGCAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280536 8 + 128539186 CTCTGCAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631703 8 + 6255621 CTCTGCAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658190 8 - 8658521 CTCTGCAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864095 8 + 124281992 CTCTGCAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503341 8 - 9212255 CTCTGCAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922332 8 + 4466143 CTCTGCAC i cebCap1.NW_016107484v1 I 1 C 0 s aotNan1.NW_018491581v1 1625280 8 + 5364348 CTCTGCAC i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33193826 8 - 38964690 CTTGACTC i canFam3.chr26 C 0 C 0 e micMur3.chr21 9507692 95 - 31815103 I e mm10.chr5 124838385 27 + 151834684 I e proCoq1.NW_012154285v1 6761406 43 - 9870158 I e dasNov3.JH568189 885289 5 - 1116856 I e otoGar3.GL873618 4345853 24 + 7922563 I a score=111843.000000 s hg38.chr12_KI270834v1_alt 115607 10 + 119498 AAAC-ATGGAT s panTro5.chr12 127401201 10 + 137163284 AAAC-ATGGAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751504 10 + 135337776 AAAC-ATGGAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265079 10 - 8369578 AAAC-ATGGAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923127 10 + 106955855 AAAC-ATGGAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038193 10 + 133663169 AAAC-ATGGAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286384 10 + 137757926 AAAC-ATGGAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684875 10 - 16319837 AAAC-ATGGAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308780 10 + 20526591 AAAC-ATGGAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280544 10 + 128539186 AAAC-ATGGAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631711 10 + 6255621 AAAC-ATGGAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658198 10 - 8658521 AAAC-ATGGAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864103 11 + 124281992 AAATAATGGAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503349 10 - 9212255 AAAT-ATGGAT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922340 10 + 4466143 AAAT-ATGAAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625288 10 + 5364348 AAAT-ATGGAT i aotNan1.NW_018491581v1 C 0 C 0 s canFam3.chr26 33193834 10 - 38964690 CAGT-ATGGAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 885294 10 - 1116856 AAAC-ACATAT i dasNov3.JH568189 I 5 C 0 e micMur3.chr21 9507692 95 - 31815103 I e mm10.chr5 124838385 27 + 151834684 I e proCoq1.NW_012154285v1 6761406 43 - 9870158 I e otoGar3.GL873618 4345853 24 + 7922563 I a score=114491.000000 s hg38.chr12_KI270834v1_alt 115617 9 + 119498 TCAGCACTT s panTro5.chr12 127401211 9 + 137163284 TCAGCACTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751514 9 + 135337776 TCAGCACTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265089 9 - 8369578 TCAGCACTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923137 9 + 106955855 TCAGCACTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038203 9 + 133663169 TCAGCACTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286394 9 + 137757926 TCAGCACTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684885 9 - 16319837 TCAGCACTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308790 9 + 20526591 TCAGCACTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280554 9 + 128539186 TCAGCACTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631721 9 + 6255621 TCAGCACTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658208 9 - 8658521 TCAGCACTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864114 9 + 124281992 TCAGCTCTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503359 9 - 9212255 TCAGCTCTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922350 9 + 4466143 TCAGCTCTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625298 9 + 5364348 TCAGCTCTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4345877 9 + 7922563 TCTGCATTC i otoGar3.GL873618 I 24 C 0 s canFam3.chr26 33193844 9 - 38964690 TCTGCACTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 885304 9 - 1116856 TCTGCATTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9507692 95 - 31815103 I e mm10.chr5 124838385 27 + 151834684 I e proCoq1.NW_012154285v1 6761406 43 - 9870158 I a score=99187.000000 s hg38.chr12_KI270834v1_alt 115626 9 + 119498 TCCAAACAC s panTro5.chr12 127401220 9 + 137163284 TCCAAACCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751523 9 + 135337776 TCCAAACCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265098 9 - 8369578 TCCAAACCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923146 9 + 106955855 TCCAAACTC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038212 9 + 133663169 TCCAAATTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286403 9 + 137757926 TCCAAATTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684894 9 - 16319837 TCCAAATTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308799 9 + 20526591 TCCAAATTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280563 9 + 128539186 TCCAAATTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631730 9 + 6255621 TCCAAATTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658217 9 - 8658521 TCCAAATTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864123 9 + 124281992 TCCAAATCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503368 9 - 9212255 TTCAAATCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922359 9 + 4466143 TTCAAATCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625307 9 + 5364348 TCCAAATCC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4345886 9 + 7922563 TCTAAATCG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124838412 7 + 151834684 CTCAGAC-- i mm10.chr5 I 27 I 1 s canFam3.chr26 33193853 9 - 38964690 TCCAAAGCC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 885313 9 - 1116856 TCTAAATGC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9507692 95 - 31815103 I e proCoq1.NW_012154285v1 6761406 43 - 9870158 I a score=433543.000000 s hg38.chr12_KI270834v1_alt 115635 32 + 119498 CCACCCTGTTTTAGGGAGCAGGCTCTTTGCAG s panTro5.chr12 127401229 32 + 137163284 CCACCCTGTTTTAGGGAGCAGGCTCTTTGCAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751532 32 + 135337776 CCACCCTGTTTTAGGGAGCAGGCTCTTTGCAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265107 32 - 8369578 CCACCCTGTTTTAGGGAGCAGGCTCTTTGCAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923155 32 + 106955855 CCACCCTGTTTTAGGGCGCAGGCTCTTTGCAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038221 32 + 133663169 CCACCCTGTTCTGGGGAGCAGGCTCTTTGCAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286412 32 + 137757926 CCACCCTGTTCTGGGGAGCAGGCTCTTTGCAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684903 32 - 16319837 CCACCCTGTTCTGGGGAGCAGGCTCTTTGCAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308808 32 + 20526591 CCACCCTGTTCTGGGGAGCAGGCTCTTTGCAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280572 32 + 128539186 CCACCCTGTTCTGGGGAGCAGGCTCTTTGCAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631739 32 + 6255621 CCACCCTGTTCTGGGGAGCAGGCTCTTTGCAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658226 32 - 8658521 CCACCCTGTTCTGGGGAGCAGGCTCTTTGCAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864132 32 + 124281992 CCACCCCATTATGGGAAGCAGGCTCTTCACAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503377 32 - 9212255 CCACCCCATTCTGGGAAGTAGGCTCTTCACAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922368 32 + 4466143 CCACCACATTCTGGGAAGCAGGCTCTTCACAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625316 32 + 5364348 CCACCCCATTCTGGGAAGCAGGCTCTTCACAG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6761449 32 - 9870158 CCACCCTGCTCTGGGGAGCCCGCTGTTTGCAG i proCoq1.NW_012154285v1 I 43 C 0 s otoGar3.GL873618 4345895 29 + 7922563 CCACACTGTTCT---GAGTTTGCTATTTGTAA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124838420 31 + 151834684 CAGCCCTGTGCTAAGGAACAGGCCATTCTCA- i mm10.chr5 I 1 C 0 s canFam3.chr26 33193862 32 - 38964690 TCACTCAGTTCCAGGGAGCAAGCTATTTGTTG i canFam3.chr26 C 0 I 1 s dasNov3.JH568189 885322 31 - 1116856 CTGCCCTGCTCTGAGGAGCAGGCT-TTTGCAG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9507692 95 - 31815103 I a score=373090.000000 s hg38.chr12_KI270834v1_alt 115667 26 + 119498 CAGGCACAGAGGGCCCTGGGAAGGCC s panTro5.chr12 127401261 26 + 137163284 TAGGCACAGAGGGCCCTGGGAAGGCC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751564 26 + 135337776 CAGGCACAGAGGGCCCTGGGAAGGCC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265139 26 - 8369578 CAGGCACGGAGGGCCCTGGGAAGGCC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923187 26 + 106955855 CAGGCACAGAGGGCCCTGGTAAGGCC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038253 26 + 133663169 CAGGCACAGAGAGCCCTGGGAAGGCC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286444 26 + 137757926 CAGGCACAGAGAGCCCTGGGAAGGCC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684935 26 - 16319837 CAGGCACAGAGAGCCCTGGGAAGGCC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308840 18 + 20526591 CAGGCACAGAGAGCCCTG-------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280604 26 + 128539186 CAGGCGCAGAGAGCCCTGGGAAGGCC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631771 26 + 6255621 CAGGCACAGAGAGCCCTGGGAAGGCC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658258 26 - 8658521 CAGGCCCAGAGAGCCCTGGGAAGGCC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864164 26 + 124281992 CATGTACAGAGGCCCCTGGGAAGGCC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503409 26 - 9212255 CAGGCACAGAGGCCCCTGGGAAGGCC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922400 26 + 4466143 CAGGCACAGAGGCCCCTGGAAAGGCC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625348 26 + 5364348 CAGGCACAGAGGCCCCTGGGAAGGCC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9507787 26 - 31815103 CAGGCACAGGGGGCCCTGGGAAGGCC i micMur3.chr21 I 95 I 17 s proCoq1.NW_012154285v1 6761481 26 - 9870158 CAGGCACAGGGGACCCTGGGAAGGCC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4345924 26 + 7922563 TAGGCACAGAGGACCCTGGCAAGGCC i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124838451 11 + 151834684 CAGGCTCAGAG--------------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33193895 21 - 38964690 TGGACACAGAGGCCCC-----AGTTC i canFam3.chr26 I 1 C 0 s dasNov3.JH568189 885353 24 - 1116856 -AGGC-CTCAGGCTCCTGGGAAGGCC i dasNov3.JH568189 C 0 C 0 a score=203939.000000 s hg38.chr12_KI270834v1_alt 115693 16 + 119498 TGGGTTTCTGTCTCTT s panTro5.chr12 127401287 16 + 137163284 TGGGTTTCTGTCTCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751590 16 + 135337776 TGGGTTTCTGTCTCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265165 16 - 8369578 TGGGTTTCTGTCTCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923213 16 + 106955855 TGGGTTTCTGTCTCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038279 16 + 133663169 TAGGTTTCTGTCTCTC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286470 16 + 137757926 TGGGTTTCTGTCTCTC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684961 16 - 16319837 TGGGTTTCCGTCTCTC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308858 14 + 20526591 --GGTTTCTGTCTCTC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280630 16 + 128539186 TGGGTTTCTGTCTCTC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631797 16 + 6255621 TGGGTTTCTGTCTCTC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658284 16 - 8658521 TGGGTTTCTGTCTCTC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864190 16 + 124281992 TGGGTTTCTGTCTCTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503435 16 - 9212255 TGGGTTTGTGTCTCTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922426 16 + 4466143 TGGGTTTCTGTCTCTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625374 16 + 5364348 TGGGTTTCTGTCTCTT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6761507 16 - 9870158 CAGGTTTCTGTCTCTT i proCoq1.NW_012154285v1 C 0 I 251 s otoGar3.GL873618 4345950 16 + 7922563 CAGGCTGCTGTCTCTC i otoGar3.GL873618 C 0 I 3 s mm10.chr5 124838462 9 + 151834684 ----CTCCCATTT--- i mm10.chr5 C 0 C 0 s canFam3.chr26 33193916 8 - 38964690 --------TAGCTCCT i canFam3.chr26 C 0 I 3 s dasNov3.JH568189 885377 16 - 1116856 CAGGTTTCTATCCCCT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9507813 17 - 31815103 I a score=254001.000000 s hg38.chr12_KI270834v1_alt 115709 24 + 119498 --CTCTGGCGGCCAGCAGGCAGCTGC s panTro5.chr12 127401303 24 + 137163284 --CTCTGGCGGCCAGCAGGCAGCTGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751606 24 + 135337776 --CTCTGGCGGCCAGCAGGCAGCTGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265181 24 - 8369578 --CTCTGGCGGCCAGCAGGCGGCTGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923229 24 + 106955855 --CTCCGGCGGCCAGCAGGCGGCTGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038295 24 + 133663169 --CTCCGGCAGCCAGCAGGCGGATGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286486 24 + 137757926 --CTCCGGCAGCCAGCAGGCGGATGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10684977 24 - 16319837 --CTCCGGCAGCCAGCAGGCGGATGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308872 24 + 20526591 --CTCCGGCAGCCAGCAGGCGGATGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280646 24 + 128539186 --CTCCGGCAGCCAGCAGGCGGATGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631813 24 + 6255621 --CTCTGGCAGCCAGCAGGCGGATGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658300 24 - 8658521 --CTCTGGCAGCCAGCAGGCGGATGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864206 24 + 124281992 --CTCTGGCGGCCATCAGGCGGATGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503451 24 - 9212255 --CCCTGGCGGCCATCAGGCAGATGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922442 24 + 4466143 --CCCTGGCAGCCATCAGGCAGATGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625390 24 + 5364348 --CTCTGGCGGCCATCAGGCGGATGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4345969 24 + 7922563 --TCTTGGCTGCCATCAGACTGACAC i otoGar3.GL873618 I 3 C 0 s mm10.chr5 124838471 16 + 151834684 --TTTTGGCTGCCA--------CTGC i mm10.chr5 C 0 C 0 s canFam3.chr26 33193927 24 - 38964690 --CCCCAGATGCCATCAGGATGTTAT i canFam3.chr26 I 3 C 0 s dasNov3.JH568189 885393 26 - 1116856 GTGCCCAGCTGGGACCAGGCTGACGT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9507813 17 - 31815103 I e proCoq1.NW_012154285v1 6761523 251 - 9870158 I a score=962655.000000 s hg38.chr12_KI270834v1_alt 115733 71 + 119498 CCTTTGGGGTTTCCTGAGGTCCTGGAGGATTCTG--GTTTGGGGAGG--GTTCTGGGGCTGTAGTCCAGAGAAAG s panTro5.chr12 127401327 71 + 137163284 CCTTTGGGGTTTCCTGAGGTCCTGGAGGATTCTG--GTTTGGGGAGG--GTTCTGGGGCTGTAGTCCAGAGAAAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751630 71 + 135337776 CCTTTGGGGTTTCCTGAGGTCCTGGAGGATTCTG--GTTTGGGGAGG--GTTCTGGGGCTGTAGTCCAGAGAAAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265205 71 - 8369578 CCTTTGGGGTTTCCTGAGGTCCTGGAGGATTCTG--GTTTGGGGAAG--GTTCTGGGGCTGTAGTCCAGAGAAAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923253 71 + 106955855 CCTTTGGGGTTTCCTGAGGTCCTGGAGGATTCTG--GTTTGGGGAAG--GTTCTGGGGCTGTAGTCCAGAGAAAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038319 71 + 133663169 CCTTTGGGGTTCCCTGAGGTCCTGGAGGATTCTG--GATGGGGGAAG--GTTCTGGGGCTGTAGTCCAGAGAAAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286510 71 + 137757926 CCTTTGGGGTTCCCTGAGGTCCTGGAGGATTCTG--GATGGGGGAAG--GTTCTGGGGCTGTAGTCCAGAGAAAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685001 71 - 16319837 CCTTTGGGGTTCCCTGAGGTCCTGGAGGATTCTG--GATGGGGGAAG--GTTCTGGGGCTGTAGTCCAGAGAAAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308896 71 + 20526591 CCTTTGGGGTTCCCTGAGGTCCTGGAGGATTCTG--GGTGGGGGAAG--GTTCTGGGGCTGTAGTCCAGAGAAAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280670 71 + 128539186 CCTTTGGGGTTCCCTGAGGTCCTGGAGGATTCTG--GATGGGGGAAG--GTTCTGGGGCTGTAGTCCAGAGAAAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631837 71 + 6255621 CCTCTGGGGTTCCCTGAGGTCCTGGAGGATTCTG--GATGGGGGAAG--GTTCTGGGGCTGTAGTCCAGAGAAAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658324 71 - 8658521 CCTTTGGGGTTCCCTGAGGTCCTGGAGGATTCTG--GATGGGGGAAG--GTTCTGGGGCTGTAGTCCAGAGAAAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864230 71 + 124281992 CCTTTGGGGTTCCCTGAGGTCCTGGAGGATTCTG--GTTGAGGGGAG--GTTCTGGGGCTGCAGTCCAGAGAGAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503475 73 - 9212255 CCTTTGGGGTTCCCTGAGGTCCTGGAGGATTCTGGTGTGGGGGGGAG--GTTCTGGGGCTGCAGTCCAGAGAGGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922466 71 + 4466143 CCTTTGCGGTCCCCTGAGGTCCTGGAGGATTCTG--GCTGAGGGGAG--GTTCTGGGGCTGCAGTCCAGAGAGAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625414 71 + 5364348 CCTTTGGGGTTCCCTGAGGTTCTGGAGGATTCTG--GTTGGGGGGAG--GCTCTGGGGCTGCAGTCCAGAGAGAG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9507830 73 - 31815103 CCTTTGTGGTTCCCTGATATTCTAGAGGATTCTG--GTTGGGGGAAGCATTTCTGGGACTGTAGTCCAGAGAAAG i micMur3.chr21 I 17 I 142 s otoGar3.GL873618 4345993 73 + 7922563 CCCTTGGGATTCCCCAATGTCTCAGAGGTTTCCA--GTTGGGGGAAGCATTTCTGGGGCTGCAGTCAGGAGAAAG i otoGar3.GL873618 C 0 I 4 s mm10.chr5 124838487 55 + 151834684 --TTTG-----------GCCCCTTGATGGGTCTC--ACTAGGGAAGT--GTATCTAGATTGCAGTTCAAATA--- i mm10.chr5 C 0 C 0 s canFam3.chr26 33193951 63 - 38964690 -CTTTGGGGCTCCCT---------GAGGATTCTG--CTTGGGGGAAGAATTTCTGGGACTGCAGTCTATATAAAG i canFam3.chr26 C 0 I 3 s dasNov3.JH568189 885419 59 - 1116856 -CTTTGGAGTT-CCTGAGGTCTCTGAGGATTCTG--GTTGGGGAGAC--AGTT-----CTGCAGTCCCGA----- i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6761523 251 - 9870158 I a score=1518551.000000 s hg38.chr12_KI270834v1_alt 115804 149 + 119498 CCCCAGATCCTCAGGGAGCTGTCTAGTAATGTGACCACTCGCCC-GCCagcatttagcaagctgct-gctctgtgcca-gg-ccc-atgctaggcggcagcgacacggaggAGCGGGGGCG-GTTCTGCCCA-ATGCTGCTGCTGCTGTTACTCCT s panTro5.chr12 127401398 149 + 137163284 CCCCAGATCCTCAGGGAGCTGTCTAGTAATGTGACCACTCGCCC-GCCagcatttagcgagctgct-gctctgtgcca-gg-ccc-atgctaggtggcagcgacacggaggAGCGGGGGCG-GTTCTGCCCA-ATGCTGCTGCTGCTGTTACTCCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751701 149 + 135337776 CCCCAGATCCTCAGGGAGCTGTCTAGTAATGTGACCACTCGCCC-GCCagcatttagcgagctgct-gctctgtgcca-gg-ccc-atgctaggtggcagcgacacggaggAGCGGGGGCG-GTTCTGCCCA-ATGCTGCTGCTGCTGTTACTCCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265276 149 - 8369578 CCCCAGATCCTCAAGGAGCTGTCTAGTAATGTGACCACTCGCCC-GCCagcatttggcgagctgct-gctctgtgcca-gg-ccc-ttgctaggtggcagcgacacggaggAGCGGGGGCG-GTTCTGCCCA-ATGCTGCTGCTGCTCTTACTCCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923324 149 + 106955855 CCCCGGATCCTCAGGGAGCTGTCTAGTAATGTGACCGCTCGCTT-GCCagcattgagcgagcagct-gctctgtgcca-gg-ccc-atgctaggtggcagcgacacggaggAGCGGGGGCG-GTTCTGCCCA-ATGCTGCTGCTGCTGTTCCTCCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038390 149 + 133663169 GCCTGGATCCTCAGGGAGCTGTCTAGTAATGTGACCGCTCGCCC-GCCagcatttagcaagcagct-gctctgtgcca-gg-ccc-atgccaggcggcagcgacacagaggAGCGGGGGCG-GTTTTGCCCA-GTGCTGCTGCTGCTGTTCCTCCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286581 149 + 137757926 GCCTGGATCCTCAGGGAGCTATCTAGTAATGTGACCGCTCGCCC-GCCagcatttagcaagcagct-gctctgtgcca-gg-ccc-atgccaggcggcagcgacacagaggAGCGGGGGCG-GTTTTGCCCA-GTGCTGCTGCTGCTGTTCCTCCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685072 149 - 16319837 GCCTGGATCCTCAGGGAGCTGTCTAGTAATGTGACCGCTCGCCC-GCCagcatttagcaagcagct-gctctgtgcca-gg-ccc-atgccaggcggcagcgacacagaggAGCGGGGGCG-GTTTTGCCCA-GTGCTGCTGCTGCTGTTCCTCCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12308967 149 + 20526591 CTCTGGATCCTCAGGGAGCTGTCTAGTAATGTGACCGCTCGCCC-GCCagcatttagcaagcagct-gctctgtgcca-gg-ccc-atgccaggcggcagcgacacagaggAGCGGGGGCG-GTTCTGCCCA-ATGCTGCTGCTGCTGTTCCTCCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280741 149 + 128539186 CCCTGGATCCTCAGGGAGCTGTCTAGTAATGTGACCGCTCGCCC-accagcatttagtgagcagct-gctctgtgcca-gg-ccc-atgccaggcggcagcgacacagaggAGCGGGGGCG-GTTCTGCCCA-ATGCTGCTGCTGCTGTTCCTCCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 631908 149 + 6255621 CCCTGGATCCTCAGGGAGCTGTCTAGTAATGTGACCACTCGCCC-GCCagcatttagcaagcagct-gctctgtgcca-gg-ccc-atgccaggcggcagcgacacagaggAGCGGGGGCG-GTTCTGCCCA-ATGCTGCTGCTGCTGTTCCTCCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658395 149 - 8658521 CCCTGGATCCTCAGGGAGCTGTCTAGTAATGTGACCGCTCGCCC-GCCagcatttagcgagcagct-gctctgtgcca-gg-ccc-atgccaggcggcagcgacacagaggAGCGGGGGCG-GTTCTGCCCA-ATGCTGCTGCTGCTGTTCCTCCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864301 136 + 124281992 CTCCGGATCCTCA----GCTGTCTAGTAATGTGACCGCTCAGCC-accagcatttagtgagcagct-gctctgtgcca-gg-ccc-atgctaggcggtggcgacacggaggAGTAGGGGCG-GCTCTGCTCA-GTGCT------GCTC---CTCCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503548 145 - 9212255 CCCTGGATCCTCAGGGGGCTGTCTAGTAATGTGACTGCTTGGCC-accagcatttagtgagcagct-gctctgtgcca-gg-ccc-acgctaggcagcggcgacacgacggAGT-GGGGCA-GCTCTGCCCA-GTGCTGCTGCCGCTG---CTCCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922537 145 + 4466143 CCCCGGATCCTCA-GGAGTTGTCTAGTAATGTGACTGCTTGGCC-accagcatttagtgagcagct-gctctgtgcca-gg-ccc-atgctaggcggcggcgacacggaggAGTGGGGGCG-GCTCTGCCCA-GTGCTGCTGCTGCTC---CTCCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625485 145 + 5364348 CCCCAGATCCTCAGGGGCCTGTCTAGTAATGTGACCGCTCGGCC-accagcatttagtgagcagct-gctctgtgcca-gg-ccc-gtgctaggcggcggcgacacggaggAGTGGGGGTG-GCTCTGC-CA-Gtgctgctgctgctg---ctcct i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4346070 139 + 7922563 TCATTGATCTTCTCTGGGCCACCTTATACAGTGATCACTCACCCAGCCAGTATTTAGAGAGCACCT-GCTCTCTTCCAGGG-CCC-TTGCTAAGGTGTAGGGCC-----TGGGTAGGGGTATGTTCTGCCTACGTGTTGCTGCTCCT--------- i otoGar3.GL873618 I 4 C 0 s mm10.chr5 124838542 122 + 151834684 -------TGCTCTGGGCCTTG---AACAAGGGCACTGCCCTCCC-------TATTATGGAGCACATGGCTTTGGGGCA-GG-GCT-TTGCTAAACTCTGGAGAC--TGCGGATGTAGGGCC--TTCTGCCTA-ATTCTCACATTTTT--------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33194017 130 - 38964690 TTCATGATCCTTTGGGGACTGTCTAGTCATTTGGTGGCTCATTCAACCAGTGTGTCAGGAGTGCCC-GCTCTGTGCCA-GGTCCT-GGGCGAGGCTTGAGGGAC--AGAGGAGGAGGGACC------------CTGCTCCTTCTCCT--------- i canFam3.chr26 I 3 C 0 s dasNov3.JH568189 885478 144 - 1116856 ---CGATCCTTCGGGGGGCTATCTAGTAATTTGGTCCCtcactcggcccatatttagagagcacct-ga-ctgtgcca-gg-ccctgtgttcagccctagggccacag-GTAGT-GGGGCC-ATTCTTCCGA-GACTTACTCATTCTTCTCTTTT- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9507903 142 - 31815103 I e proCoq1.NW_012154285v1 6761523 251 - 9870158 I a score=53503.000000 s hg38.chr12_KI270834v1_alt 115953 3 + 119498 CCT s panTro5.chr12 127401547 3 + 137163284 CCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751850 3 + 135337776 CCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265425 3 - 8369578 CCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923473 3 + 106955855 CCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038539 3 + 133663169 CCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286730 3 + 137757926 CCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685221 3 - 16319837 CCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309116 3 + 20526591 CCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280890 3 + 128539186 CCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632057 3 + 6255621 CCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658544 3 - 8658521 CCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864437 3 + 124281992 CCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503693 3 - 9212255 CCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922682 3 + 4466143 CCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625630 3 + 5364348 cct i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6761774 3 - 9870158 CCT i proCoq1.NW_012154285v1 I 251 C 0 s otoGar3.GL873618 4346209 3 + 7922563 CCT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124838664 3 + 151834684 CCT i mm10.chr5 C 0 C 0 s canFam3.chr26 33194147 3 - 38964690 CTT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 885622 3 - 1116856 TTT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9507903 142 - 31815103 I a score=85323.000000 s hg38.chr12_KI270834v1_alt 115956 5 + 119498 -TTTGG s panTro5.chr12 127401550 5 + 137163284 -TTTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751853 5 + 135337776 -TTTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265428 5 - 8369578 -TTTGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923476 5 + 106955855 -TTTGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038542 5 + 133663169 -TTTGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286733 5 + 137757926 -TTTGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685224 5 - 16319837 -TTTGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309119 5 + 20526591 -TTTGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280893 5 + 128539186 -TTTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632060 5 + 6255621 -TTTGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658547 5 - 8658521 -TTTGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864440 5 + 124281992 -TTTGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503696 5 - 9212255 -TTTGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922685 5 + 4466143 -TTTGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625633 5 + 5364348 -TTTGG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9508045 5 - 31815103 -TTTGG i micMur3.chr21 I 142 C 0 s proCoq1.NW_012154285v1 6761777 5 - 9870158 -TTTGG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4346212 5 + 7922563 -CTTGG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124838667 5 + 151834684 -TTCTG i mm10.chr5 C 0 C 0 s canFam3.chr26 33194150 5 - 38964690 -TCTGG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 885625 5 - 1116856 TTTTG- i dasNov3.JH568189 C 0 C 0 a score=2478478.000000 s hg38.chr12_KI270834v1_alt 115961 179 + 119498 GTTTAACTCACGTCTATttttatgtcctgattacacaaggaacacatgttcattgtagg-aaaatcaga---------aa-------aacatataataggcattccaaatatatgtgtcattcaaaagaaaacaaaatcactcatcc------ccctgccc-actaataaccacttgcaacaCGGAGGGATCCAAACATCCTT s panTro5.chr12 127401555 179 + 137163284 GTTTAACTCACGTCTATttttatgttctgattacacaaggaacacatgttcattgtagg-aaaatcaga---------aa-------aacatataataggcattccaaatatatgtgtcattcaaaagaaaacaaaatcactcatcc------ccctgccc-actaataaccactTGCAACACGGAGGGATCCAAACATCCTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125751858 179 + 135337776 GTTTAACTCACGTCTATttttatgtcctgattacacaaggaacacatgttcattgtagg-aaaatcaga---------aa-------aacatataataggcattccaaatatatgtgtcattcaaaagaaaacaaaatcactcatcc------ccctgccc-actaataaccacttgcaacaCGGAGGGATCCAAACATCCTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265433 179 - 8369578 GTTTAACTCACGTCTATttttatgtcctgattacacaaggaacacatgttcattgtagg-aaaatcaga---------aa-------aacatataataggcattccaaatatatgtgtcattcaaaagaaaacaaaatcactcatcc------ccctgccc-actaataaccactTGCAACACGGAGGGATCCAAACATCCTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923481 179 + 106955855 GTTTAACTCACATCTATttttatgtcctgattacacaaggaacacatgttcattgtagg-aaaatcaga---------aa-------aacatataataggcattccaaatatatgtgtcattcaaaagaaaacagaatcactcatcc------ccctgccc-actaataaccacttgcaacatGGAGGGATCCAAACATCCTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038547 180 + 133663169 GTTTAAGTCACATCTATTTTTATGTCCTGATTACACAAGGAACACATGTTCATTGTAGGAAAAATCAGA---------AA-------AACATATAATAGGCATTCCAAATATATGTGTCAGTCAAAAGAAAACAAAATCACTCATCC------CCCTGCCC-ACTAATAACCACTTGCCACACGGAGGGATCCAAACATCCTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286738 180 + 137757926 GTTTAAGTCACATCTATttttatgtcctgattacacaaggaacacatgttcattgtaggaaaaatcaga---------aa-------aacatataataggcattccaaatatatgtgtcagtcaaaagaaaacaaaatcactcatcc------ccctgccc-actaataaccactTGCCACACGGAGGGATCCAAACATCCTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685229 180 - 16319837 GTTTAAGTCACATCTATTTTTATGTCCTGATTACACAAGGAACACATGTTCATTGTAGGAAAAATCAGA---------AA-------AACATATAATAGGCATTCCAAATATATGTGTCAGTCAAAAGAAAACAAAATCACTCATCC------CCCTGCCC-ACTAATAACCACTTGCCACACGGAGGGATCCAAACATCCTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309124 180 + 20526591 GTTTAAGTCACATCTATTTTTATGTCCTGATTACACAAGGAACACATGTTCATTGTAGGAAAAATCAGA---------AA-------AACATATAATAGGCATTCCAAATATATGTGTCAGTCAAAAGAAAACAAAATCACTCATCC------CCCTGCCC-ACTAATAACCACTTGCCACACGGAGGGATCCAAACATCCTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119280898 180 + 128539186 GTTTAAGTCACATCTATtttcatgtcctgattacacaaggaacacatgttcattgtaggaaaaatcaga---------aa-------aacatataataggcattccaaatatatgtgtcagtcaaaagaaaacaaaatcactcatcc------ccctgccc-accaataaccacCTGCCACATGGAGGTATCCAAACATCCTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632065 178 + 6255621 GTTTAAGTCACATCTATttttatgtcctgattacacaaggaacacatgttcattgtaggaaaaatcaga---------aa-------aac--ataataggcattccaaatatatgtgtcagtcaaaagaaaacaaaatcactcatcc------ccctgccc-actaataaccactTGCCACATGGAGGGATCCAAACATCCTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658552 180 - 8658521 GTTTAAGTCACATCTATTTTTATGTCCTGATTACCCAAGGAACACATGTTCATTGTAGGAAAAATCAGA---------AA-------AACATATAATAGGCATTCCAAATATATGTGTCAGTCAAAAGAAAACAAAATCACTCATCC------CCCTGCCC-ACTAATAACCACTTGCCACACGGAGGGATCCAAACATCCTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864445 177 + 124281992 GTTTAAGTCACATCTATTTTTATGTCCTGATGATACAAGGAACAC--GTTTATTGTAGG-AAGATCAGA---------AA-------AACATAAAATAGTCATCCCAAATATACGTGTCAATCAAAAGAAAACAAAATCACTCATCC------CCTTGCCC-ACGAATAACCAGCTGGAACACAGAACGATCCAAACAGGCTC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503701 175 - 9212255 GTTTAAGTCACATCTATttttatgtcctgatgatacaaggaacac--gtttattgtagg-aagttcaga---------aa-------aacataaaataggcatcccaaatat--gtgtcaatcaaaagaaaacaaaatcactcatcc------ccttgccc-accgataaccactTGGAACACAGAGGGATCCAAACAGCCTC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922690 177 + 4466143 GTTTAAGTCACATCTATTTTTATGTCCTGATGATACAAGGAACAC--GTTTATTGTAGG-AAGTTCACA---------AA-------AACATATAATAGTCACCCCAAATATATGTGTCAATCAAAAGAAAACAAAATCACTCATCC------CATTGCCC-ACCAATAACCGCTTGGAACACAGAGGGATCCAAACAGCCTC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625638 177 + 5364348 GTTTAAGTCACATCTATTTTTATGTCCTGATGATACAAGGAACAC--GTTTATTGTAGG-AAAATCAGA---------AA-------AACATAAAATAGTCATCCCAAATATATGTGTCAATCAAAAGTAAACAAAATCACTCATCC------CCTTGCCC-ACCAATAACCACTTGGAACACAGAGGGATCCAAACAGCCTC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9508050 188 - 31815103 GTTCAAATCACATCTATTTTTATGTCCTGGTCACACCAGAAGCACATATTCATTGCAGA-GAAGTCAGAGAATCCAGAAA-------AGCGTGTAACAGACATTCCAAAGACAGGTATCAATCAAAAGAAAATAAAACCACTCCTCC------CCCTGCCC-GCTGATACCCACTTCTGTCACTGAGGGGTCCAAACATCCCT i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6761782 187 - 9870158 GTTTAACTCACATCTAtttttacgtcctgatcacacaagaagcacatattcattgtaga-gaagtcagaaaatccagaaa-------agcatataacagacattgtaaagacatgtatcaatc-aaagaaaataaaatctctcatcc------ccctgccc-actgataaccacttctaacactgaggggtccaaacatcctt i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4346217 178 + 7922563 GTTTAAATCACATCTATTTTTATGTCTTGATTACACAAGAA--ACATATGCATTGTGGA-GAAGTCAGA-AATCTAAAAA-------AGC--ATAATAGACACTCCAAATATATGCATTAATCAAAAGAAAATTA-----CTCATTA------TCCTGCCC-ACTGATAACCGCTTATAACACTGAGGGGTCCAAACATCCTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124838672 173 + 151834684 GCTCGAGTCACATTCAAGTTTATTTCTGGATTATGGAAGGA-TATGCATTCGCGGTAGA-AAAGTTAGA---------AAATTCTGGAAAATGCAATAGGCATTCTAGGCATATATATTAATGGGAAGTGAA-AAAGCCACTCGTCA------CTC--CAG-ACTACGGGCGACTTTGGAC---------TCTAAACTCCCTT i mm10.chr5 C 0 C 0 s dasNov3.JH568189 885630 195 - 1116856 GTTTAAATCACATCTACttttatttcccaattacagaaggaacacatatccattgtaga-aaaatcagaaaatccagaaa-------aGCATATAATAGATATTCCAAATGTAAGTGTCAATCAAGATAAAATGTTATCATTCATGCCCTGTGCCCTGCCCTGTTGATAACCAGTTGTGGTACCTAAGGCTCCGTACTTCCTT i dasNov3.JH568189 C 0 C 0 e canFam3.chr26 33194155 0 - 38964690 C a score=173215.000000 s hg38.chr12_KI270834v1_alt 116140 15 + 119498 CTCATCTTCTCTTAG s panTro5.chr12 127401734 15 + 137163284 CTCATCTTCCCTTAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752037 15 + 135337776 CTCATCTTCCCTTAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265612 15 - 8369578 CTCATCTTCCCTTAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923660 15 + 106955855 CTCATCTTCCCTCAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038727 15 + 133663169 CTCATCTTCCCTTAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286918 15 + 137757926 CTCATCTTCCCTTAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685409 15 - 16319837 CTCATCTTCCCTTAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309304 15 + 20526591 CTCATCTTCCCTTAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281078 15 + 128539186 CTCATCTTCCCTTAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632243 15 + 6255621 CCCATCTTCCCTTAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658732 15 - 8658521 CTCATCTTCCCTTTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864622 15 + 124281992 CTCATCTCTCCTTAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503876 15 - 9212255 CTTATCTCTCCTTAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922867 13 + 4466143 CTCATCTCTCCTT-- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625815 15 + 5364348 CTCACCTCTCCTTAG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9508238 15 - 31815103 CTCATCTTTTCTTAG i micMur3.chr21 C 0 I 37 s proCoq1.NW_012154285v1 6761969 15 - 9870158 ctcatctttCCTTAG i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4346395 12 + 7922563 GTCATTTCTTCG--- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124838845 6 + 151834684 GTCTTT--------- i mm10.chr5 C 0 C 0 s canFam3.chr26 33194155 7 - 38964690 CTTATCT-------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 885825 15 - 1116856 CCCATCTTCTCTTAG i dasNov3.JH568189 C 0 C 0 a score=314057.000000 s hg38.chr12_KI270834v1_alt 116155 39 + 119498 AGAGCTCAGGCCACACGCATAACTCTTCC----CAGCAAGAGC s panTro5.chr12 127401749 39 + 137163284 AGAGCTCAGGCCACACGCATAACTCTTCC----CAGCAAGAGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752052 39 + 135337776 AGAGCTCAGGCCACACGCATAACTCTTCC----CAGCAAGAGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265627 39 - 8369578 AGAGCTCAGGCCACACGCATAACTCTTCC----CAGCAAGAGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923675 39 + 106955855 AGAGCTCAGGCCACACGCGTAACTCTTCC----TAGCAAGAGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038742 34 + 133663169 AGAGCTCAGGCCGCACGCGTAACTCTTCC----TAGCA----- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286933 34 + 137757926 AGAGCTCAGGCCGCACGCGTAACTCTTCC----TAGCA----- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685424 34 - 16319837 AGAGCTCAGGCCACACGCGTAACTCTTCC----TAGCA----- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309319 34 + 20526591 AGAGCTCAGGCCACACGCGTAACTCTTCC----CAGCA----- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281093 34 + 128539186 AGAGCTCAGGCCACACGCGTAACTCTTCC----TAGCA----- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632258 34 + 6255621 AGAGCTCAGGCCACACGCGTAACTCTTCC----TAGCA----- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658747 34 - 8658521 AGAGCTCAGGCCACACGCGTAACTCTTCC----TAGCA----- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864637 38 + 124281992 AGAGCTCAGGCCACACGTGTAACTCTTCC----TAGAA-GAGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503891 38 - 9212255 AGAGCTCAGGCCACACGCATAACTCTTCC----TAGAA-GAGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922880 36 + 4466143 --AGCTCAGGCCACACGTGTAACTCTTCC----TAGAA-GAGC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625830 38 + 5364348 AGAGCTCAGGCCACATGTGGAACTCTTCC----TAGAA-GAGC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6761984 38 - 9870158 CCAGCTCTTGCCACATAGG-AACTCTTCA----TATCAAGTGT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4346407 39 + 7922563 AGAGCTCTTGCCACATATGCAATTCTTCA----TGGCAAATGT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124838851 33 + 151834684 ---GCTCAGGGCA-------ACCACTGCCATTGCAGAGGGGGC i mm10.chr5 C 0 C 0 s canFam3.chr26 33194162 9 - 38964690 --AGCAAATAC-------------------------------- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 885840 29 - 1116856 AGAGATCTGGCCA----------TTTTCA----GAACAAAGGT i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9508253 37 - 31815103 I a score=4005980.000000 s hg38.chr12_KI270834v1_alt 116194 261 + 119498 ATTTTCTCCTAAGTGTGTGACTAGTGA--------AAACGGCACCAACACGTACCACAAAGGGAAACC-TACTGTCATTTACTTCTGGGGAGG-A-GTTCTTACCTGTCTGTTCCGAACTTTTGACTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTT-ACACATTAATTCT---T-----TTACTGTACATTTCAAAATCTT--CATCAGCTTTG-AAAATGCAAAACCGATTCCCACGATTAGCCAGCGAGTCCTACCCAGACAGAGCAGGGTTTGGC- s panTro5.chr12 127401788 262 + 137163284 ATTTTCTCCTAAGTGTGTGACTAGTGA--------AAACGGCACCAACACGTACCACAAAGGGAAACC-TCCTGTCATTTACTTCTGGGGAGG-A-GTTCTTACCTGTCTGTTCCGAACTTTTGACTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTTAACACATTAATTCT---T-----TTACTGTACATTTCAAAATCTT--CATCAGCTTTG-AAAATGCAAAACCGATTCCCACGATTAGCCAGCGAGTCCTACCCAGACAGAGCAGGGTTTGGC- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752091 262 + 135337776 ATTTTCTCCTAAGTGTGTGACTAGTGA--------AAACGGCACCAACACGTACCACAAAGGGAAACC-TCCTGTCATTTACTTCTGGGGAGG-A-GTTCTTACCTGTCTGTTCCGAACTTTTGACTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTTAACACATTAATTCT---T-----TTACTGTACATTTCAAAATCTT--CATCAGCTTTG-AAAATGCAAAACCGATTCCCACGATTAGCCAGCGAGTCCTACCCAGACAGAGCAGGGTTTGGC- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265666 261 - 8369578 ATTTTCTTCTAAGTGTGTGACTAGTGA--------AAACGGCTCCAGCACGTACCACAAAGGGAAACC-TACTGTCATTTACTTCTGGGGAGG-A-GTTCTTACCTGTCTGTTCCGAACTTTTGACTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTT-ACACATTAATTCT---T-----TTACTGTACATTTCAAAATCTT--CATCAGCTTTG-AAAATGCAAAACCGATTCCCACGATTAGCCAGCAAGTCCTACCCAGACACAGCAGGGTTTGGC- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923714 261 + 106955855 ATTTTCTTCTGAGTGTGTGACTAGTGA--------AAACGGCACCAACATGTACCACAAAGGGAAACG-TACTGTCATTTACTTCTGGGGAGG-A-GTTCTTACCTGTCTGTTCCGAACTTTTGACTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTT-ACACATTAATTCT---G-----TCACCGTACATTTCAAAATCTT--CATCAGCTTTG-AAAATGCAAAACCGATTCCCACGATTGGCCAGCGAGTCCTATCCAGACAGAGCAGGGTTTGGC- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124038776 250 + 133663169 -----------AGTGTGTGACTAGTGA--------AAACGGCACTGACACGTACCACAAAGGGAAAGG-TACTGTCATTTACTTCTGGGGAGG-A-GTTCTTACCTGTCTGTTCCGAACTTTTGACTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTT-ACACATTAATTCT---G-----TTACCATACATTTCAAAATCTT--CATCAGCTTTG-AAAATGCAAAACCGATGCCCATGATTGGCCAGCAAGTCCTACCCAGACAGAGCAGGGTTTGGC- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128286967 250 + 137757926 -----------AGTGTGTGACTAGTGA--------AAACGGCACTGACACGTACCACAAAGGGAAAGG-TACTGTCATTTACTTCTGGGGAGG-A-GTTCTTACCTGTCTGTTCCGAACTTTTGACTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTT-ACACATTAATTCT---G-----TTACCATACATTTCAAAATCTT--CATCAGCTTTG-AAAATGCAAAACCGATGCCCATGATTGGCCAGCAAGTCCTACCCAGACAGAGCAGGGTTTGGC- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685458 250 - 16319837 -----------AGTGTGTGACTAGTGA--------AAACGGCACTGACACGTACCACAAAGGGAAAGG-TACTGTCATTTACTTCTGGGGAGG-A-GTTCTTACCTGTCTGTTCCGAACTTTTGACTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTT-ACACATTAATTCT---G-----TTACCATACATTTCAAAATCTT--CATCAGCTTTG-AAAATGCAAAACCGATGCCCATGATTGGCCAGCAAGTCCTACCCAGACAGAGCAGGGTTTGGC- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309353 250 + 20526591 -----------AGTGTGTGACTAGTGA--------AAACGGCACTGACACGTACCACAAAGGGAAAGG-TACTGTCATTTACTTCTGGGGAGG-A-GTTCTTACCTGTCTGTTCCGAACTTTTGACTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTT-ACACATTAATTCT---G-----TTACCATACATTTCAAAATCTT--CATCAGCTTTG-AAAATGCAAAACCGATGCCCACGATTGGCCAGCAAGTCCTACCCAGACAGAGCAGGGTTTGGC- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281127 250 + 128539186 -----------AGTGTGTGACTAGTGA--------AAACGGCACTGACACGCACCACAAAGGGAAAGG-TACTGTCATTTACTTCTGGGGAGG-A-GTTCTTACCTGTCTGTTCCGAACTTTTGACTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTT-ACACATTAATTCT---G-----TTACCACACATTTAAAAATCTT--CATCAGCTTTG-AAAATGCAAAACCGATGCCCACGATTGGCCAGCAAGTCCTACCCAGACAGAGCAGGGTTTGGC- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632292 250 + 6255621 -----------AGTGTGTGACTAGTGA--------AAACGGCACTGACATGTACCACAAAGGGAAAGG-TACTGTCATTTACTTCTGGGGAGG-A-GTTCTTACCTGTCTGTTCCGAACTTTTGACTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTT-ACACATTAATTCT---G-----TTACCATACATTTCAAAATCTT--CATCAGCTTTG-AAAATGCAAAACCGATGCCCATGATTGGCCAGCAAGTCCTACCCAGACAGAGCAGGGTTTGGC- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4658781 250 - 8658521 -----------AGTGTGTGACTAGTGA--------AAACGGCACCAACACATACCACAAAGGGAAAGG-TACTGTCATTTACTTCTGGGGAGG-A-GTTCTTACCTGTCTGTTCCGAACTTTTGACTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTT-ACACATTAATTCT---G-----TTACCATACATTTCAAAATCTT--CATCAGCTTTG-AAAATGCAAAACCGATGCCCACGATTGGCCAGCAAGTCCTACCCAGACAGAGCAGGGTTTGGC- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864675 269 + 124281992 GTTTTCTTCTCAGTGTGTGACTAGTGAGAACAAACGAACGGCACTGACACATACCACGAAGGGAGACG-TACTGTCATTTACTTCTGGGGAGG-A-GTTCTTACCTGTCTGTTCGGAACTTTTGAGTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTT-ACACATTAATTCT---G-----TTACTGTACATTTTAGAATCTT--CATCAGCTTTC-AAAAGGCAAAACCGATTCCCATGATTGGCCAGTGAGTCCTGCTCAGACAGAGCAGGGTTTGGC- i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 503929 263 - 9212255 GTTTTCTTCTCAGTGTGTGACTAGTG-----AATCAAACGGCACCGACACGTACCACAAAGGGAAATG-TACTGTCATTTACTTCT-GGGAGG-A-GTTCTTACCTGTCTGTTCGGAACTTTTGAGTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTT-ACACATTATTTCT---G-----TTACTGTACATTTCAGAATCTT--CATCAGCTTTG-AAAAGGCAAAACTGATTCTCATGACTGGCCAGCACGTCCTGCTCAGGCAGAGCAGGGTTTGGC- i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2922916 265 + 4466143 GTTTTCTTCTCAGTGTGTGACTAGTGA----AAACAAACGGCACCGACACGTACCACGAAGGGAAATG-TACTGTCATTTACTTCTGGGGAGG-A-GTTCTTACCTGTCTGTTCGGAACTTTTGAGTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTT-ACACATTAATTCT---G-----TTACCGTACATTTCAGAATCTT--CATCAGCTTTG-AAAAGGCAAAACCGATTCCCACGATTGGTCAGCGAGTCCTGCTCAGACAGAGCAGGGTTTGGC- i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1625868 264 + 5364348 GTTTTCTTCTCAGTGTGTGACCAGTGA----AAACAAACAGCACCGACACGTACCACAAAGGAAAATG-GACTGTCATTTACTCCT-GGGAAG-A-GTTCTTACCTGTCTGTTCGGAACTTTTGAGTGTCAGCTCATATGTTAAATCTAAAAGGGAAATGTT-ACACATTAATTCT---G-----TTACCGTACATTTCAGAATCTT--CATCAGCTTTG-AAAAGGCAAAACCGATTCCCATGATTGGCCAGTGAGTCCTGCTCAGACAGAGCAGGGTTTGGC- i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9508290 266 - 31815103 ATTTTCTTTTAAGTGTGTAACTAGTGA----AAACAAATGGCACCGACACAAACCACAAAAGGAAACGATACTGTGATTACCTTTTGGGGAGG-A-GTTCTTACCTGTCTGTTCAGAACTTTTGACTGTCAGTTCGTATGTCAAATCTAAAAAGGAAATTTT-ATACATTAGTTCT---G-----TTAGGGTACATCTCAAAACCTT--CATCGGCTCTG-AGAATGCAGAACCGACTCCCACGATTAGGCAGCAAGTCGTGCCCAGACAGAGCAGGCTTTGGC- i micMur3.chr21 I 37 I 196 s proCoq1.NW_012154285v1 6762022 263 - 9870158 GTTTTCTCCTAAGTGTGTAACTAGTGA----AAACAAATGGTGCCAACACAAACCACAAAAGGAAACGATACTGTTATTAACTTTTGGGGAGG-A-GTTCTTACCTGTCTGTTCGGAACTTTTGACTGTCAGTTCATACGTCAAATCTAAAAAGGAAATTTT-ATACATTAGTTCT---G-----TTACGGTACATTTCAAAAC-----CATCAGCTCTG-AGAATGCAGAACTGATTCCCATGATTAGGTAGCAAGTGGTGCCCAGACAGGGCAGGGTTTGGC- i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4346446 265 + 7922563 GTTTCCTTCAAAGTGTATAACTAGTGA----AAACAAATGGTACCAACACAAACCACAAAAAGAAGCAATACTGTCATTAACGTTTGGGGAGG-A-GGTCTTACCTGTCTGCTCAGAACTTTTGAGTGTCAGCTCGTATGTCAGATCTAAAAAGGAAATTTT-ATACGTTAGTTCT---G-----TTATGGTACACTTCAAACC-TT--CATCAGCTCTG-GAAATGCAGAAGCAATTCGCATGAGTAGGTAGAGAGTTGTGCCCACACAGAGCAGGGTTTGGT- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124838884 220 + 151834684 ---------------------AAGTGG--------GAACAG-----------ATTACAAA-GAAAACA-AGATG-CAACCACATCTGGTGA-G-A-GTTCTTACCTGTCAGTTCGAAACTTTTGAGTGTCAGCTCATATGTTAGATCTACAAAAGAAACATG-ACACATTGATTATCAAG-----TTCCAATAAATT---AGTTCTTCCCATCAGTTCTG-ACAACA-AGCACTAAATCCCA------GTGAGTGAGTTTGACCCTGTAGAAGCAGGGGTCAC-- i mm10.chr5 C 0 C 0 s canFam3.chr26 33194171 271 - 38964690 ATTTTCTTCTAAATATGTAGCTAGTAA------ACAAATGGCACCAACATGTGCCATAATGGGAAATAATATTGTTATTCACTTTTGGGGAGG-ACATTCTTACCTGTCTGGTCTGAACTTTTGACGGTCAGCTCATATGTTAAATCTAAAAATGAAACCAT-ATACATTAATTTT---GTATGTTTACAGTAGGTTTCAAAGCCTT--TATCAGCTCTGAAAAATGCAGAACTGATTCCCATGATCAGCCTGCGAGTTCTGCCCAGACAGAGCAGGGTTTGGC- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 885869 272 - 1116856 GTTTTCTTCTAAGTGTGTAACTAGTGA----AAACACATGGCACCAACATACATCACAAAAGGAAACAAGACTGTCATTTACTTTTGGGGAGACA-GTTCTTACCTGTCTGTTCTGAACTTTTCAGTGTCAGCTCATATGTTAAATCTAAAAAGCAAATAAT-ATATATTAATTTT---GCATGGTTATGGCATATTTCAACATCTT--CATCAGCTCTG-AAAATGCAGAAACTATTCTT-CAATTAGCCAACTCGTCCTGCTCTAAAAGGTCAGGCTTTGGGC i dasNov3.JH568189 C 0 C 0 a score=284097.000000 s hg38.chr12_KI270834v1_alt 116455 22 + 119498 AGCAGGAGAGGTGAGCATGAGA s panTro5.chr12 127402050 22 + 137163284 AGCAGGAGAGGTGAGCATGAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752353 22 + 135337776 AGCAGGAGAGGTGAGCATGAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265927 22 - 8369578 AGCAGGAGAGGTAAGCATGAGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923975 22 + 106955855 AGCAGGAGAGGCGAGCATGAGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124039026 22 + 133663169 AGCAGGAGAGGCGAGCATGACA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128287217 22 + 137757926 AGCAGGAGAGGCGAGCATGACA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685708 22 - 16319837 AGCAGGAGAGGCGAGCATGACA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309603 22 + 20526591 AGCAGGAGAGGCGAGCGTGAGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281377 22 + 128539186 AGCAGGAGAGGCGAGCATGAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632542 22 + 6255621 AGCAGGAGAGGCGAGCATGAGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4659031 22 - 8658521 AGCAGGAGAGGCGAGCATGAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864944 22 + 124281992 AGCAAGAGAGGCGAGCGTGAGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 504192 22 - 9212255 AGCAGGAGAGACAAGCGTGAGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2923181 22 + 4466143 AGCAGGAGAGGCGAGCATGAGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1626132 22 + 5364348 AGCAGGAGAGGTGAGCGTGAGA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6762285 21 - 9870158 -AGCTCAGAAGCAAGCATGAGA i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4346711 22 + 7922563 AGTCTCAGAGGCAAGTATGAGA i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124839104 22 + 151834684 AGCTCCAGGGATCAATGTAAGA i mm10.chr5 C 0 I 309 s canFam3.chr26 33194442 22 - 38964690 AGTATTAGTGGCAGGCGTGCAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 886141 22 - 1116856 AGCATTCGAGGCATGTGTGAAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9508556 196 - 31815103 I a score=346475.000000 s hg38.chr12_KI270834v1_alt 116477 27 + 119498 GCAGCAGAAAACATCTGCGGCCACTGT s panTro5.chr12 127402072 27 + 137163284 GCAGCAGAAAATATCTGCGGCCACTGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752375 27 + 135337776 GCAGCAGAAAATATCTGCGGCCACTGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265949 27 - 8369578 GCAGCAGAAAATATCTGCGGCCACTGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97923997 27 + 106955855 GCAGCAGAAAATATCAGCGGCCGCTGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124039048 27 + 133663169 GCAGCAGAAAATATCAGGGGCTGCTGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128287239 27 + 137757926 GCAGCAGAAAATATCAGGGGCTGCTGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685730 27 - 16319837 GCAGCAGAAAATATCAGGGGCTGCTGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309625 27 + 20526591 GCAGCAGAAAATATCAGGGGCTGCTGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281399 27 + 128539186 GCAGCAGAAAATATCAGGGGCTACTGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632564 27 + 6255621 GCAGCAGAAAACATCAGGGGCTGCTGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4659053 27 - 8658521 GCAGCAGAAAAGATCAGGGGCTGCTGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864966 27 + 124281992 GCAGCAGAAAATAACAGGGGCTGCTAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 504214 27 - 9212255 GCAGCAGAAAATATCAGCAGCTGCTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2923203 27 + 4466143 GCAGCAGAAAATATCCATGGCTGCTAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1626154 27 + 5364348 GCAGCAGAAAATATCAGCGGCTGCTAT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6762306 27 - 9870158 ACAGCAGAAGATATCAGCGGCCACTGT i proCoq1.NW_012154285v1 C 0 I 146 s otoGar3.GL873618 4346733 27 + 7922563 ACAGCAGAAAATATCAGTGGCCACTAT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33194464 27 - 38964690 ATGGCAGGAACCACCCGTGGCCACTAT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 886163 26 - 1116856 ACAGCAGATAATATCAGTGGCTACAA- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9508556 196 - 31815103 I e mm10.chr5 124839126 309 + 151834684 I a score=1709766.000000 s hg38.chr12_KI270834v1_alt 116504 154 + 119498 GCTCCCTGGGG-TC-AGAGGGCACCCTCTGT--TCCCCCAAA--CTCCCTTCCCCATTCCCCCACAGCATATCCCAACCATCCAAACCAAACAATCCAGCAGCTGGCTC---TATGTATCACACAGGCTATATCTTGGTTATCA----GTTCCAAAACACATTGGAG s panTro5.chr12 127402099 154 + 137163284 GCTCCCTGGGG-TC-AGAGGGCACCCTCTGT--TCCCCCAAA--CTCCCTTCCCCATTCCCCCACAGCATATCCCAACCATCCAAAACAAACAATCCAGCAGCTGGCTC---TATGTATCACACAGGCTATATCTTGGTTATCA----GTTCCAAAACACATTGGAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752402 154 + 135337776 GCTCCCTGGGG-TC-AGAGGGCACCCTCTGT--TCCCCCAAA--CTCCCTTCCCCATTCCCCCACAGCATATCCCAACCATCCAAAACAAACAATCCAGCAGCTGGCTC---TATGTATCACACAGGCTATATCTTGGTTATCA----GTTCCAAAACACATTGGAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8265976 154 - 8369578 GCTCCCTGGGG-TC-AGAGGGCACCCTCTGT--TCCCCCAAA--CTCCCTTCCCCATTCCCCCACAGCATATCCCAACCATCCAAAACAAACAATCCAGCAGCTGGCTC---TATGTATCACACAGGCTATATCTTGGTTATCA----GTTCCAAAACACACTGGAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97924024 150 + 106955855 GCTCCCTGGGG-TC-AGAGGGCACCCTCTGT--TCCCCCAAA--CTCCCTTCCCCATTCCCCCACAACATATCCCAACCAACCAAAACAAG----CCAGCAGCTGGGTC---TATGTATCACACAGGCTATATCTTGGTTATCA----GTTCCAAAACACATTGGAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124039075 150 + 133663169 GCTCCCTGGGG-TC-AGAGGGCACCCTCTGT--TCCCCCAAA--CTCCCTTCCCCATTCCCCCACGACATAGCCCAACCATCCAAAACAAG----CCAGCAGCTGGCTC---TATGTATCACACAGGTTATATCTTGGTTATCA----GTTCCAAAACGCATTGGAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128287266 150 + 137757926 GCTCCCTGGGG-TC-AGAGGGCACCCTCTGT--TCCCCCAAA--CTCCCTTCCCCATTCCCCCACGACATAGCCCAACCATCCAAAACAAG----CCAGCAGCTGGCTC---TATGTATCACACAGGTTATATCTTGGTTATCA----GTTCCAAAACGCATTGGAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685757 150 - 16319837 GCTCCCTGGGG-TC-AGAGGGCACCCTCTGT--TCCCCCAAA--CTCCCTTCCCCATTCCCCCACGACATAGCCCAACCATCCAAAACAAG----CCAGCAGCTGGCTC---TATGTATCACACAGGTTATATCTTGGTTATCA----GTTCCAAAACGCATTGGAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309652 150 + 20526591 GCTCCCTGGGG-TC-AGAGGGCACCCTCTGT--TCCCCCAAA--CTCCCTTCCCCATTCCCCCACGACATAGCCCAACCATCCAAAACAAG----CCAGCAGCTGGCTC---TATGTATCACACAGGTTATATCTTGGTTATCA----GTTCCAAAACGCATTGGAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281426 150 + 128539186 GCTCCCTGGGG-TC-AGAGGGCACCCTCTGT--TCCCCCAAA--CTCCCTTCCCCATTCCCCCACGACATAGCCCAACCATCCAAAACAAG----CCAGCTGCTGGCTC---TATGTATCACACAGGTTATATCTTGGTTATCA----GTTCCAAAACGCATTGGAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632591 150 + 6255621 GCTCCCTGGGG-TC-AGAGGGCACCCTCTGT--TCCCCCACA--CTCCCTTCCCCATTCCCCCACGACATAGCCCAACCATCCAAAACAAG----CCAGCAGCTGGCTC---TATGTATCACACAGGTTATATCTTGGTTATCA----GTTCCAAAACGCATTGGAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4659080 150 - 8658521 GCTCCCTGGGG-TC-AGAGGGCACCCTCTGT--TCCCCCAAA--CTCCCTTCCCCATTCCCCCACAACATAGCCCAACCATCCAAAACAAG----TCAGCAGCTGGCTC---TATGTATTACACAGGTTATATCTTGGTTATCA----GTTCCAAAATGCATTGGAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114864993 150 + 124281992 GCTCCCTGGGG-TC-AGAGGGCAGCCTCTGT--TCCCCCAAA--CTCTCTTCCCCATTCCCCCATAACATATCCCAACAATCCAAAACAAG----CCAGCAGCAGGCTC---TATGTATCACACAGGCTACATCTTGATTATTG----GTTCCAAAACGTATTGGAA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 504241 143 - 9212255 GCTCCCTGGGG-TC-AGAGGGCAGCCTCTGT--TCCCCCAAA--CTCCCTTCCCCATTCCCCCATAACATATCCTAACAATCCCAAACAAG----CCAGCAGCTGGCTC---TACGTATCACACAGGCTACATCTTGGTTATT-----------AAACGTATTGGAA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2923230 150 + 4466143 GCTTCCTAGGG-TC-AGAGGGCAGCCTCTGT--TCCCCCAAA--CTCCCTTCCCCACTCCCCCATAACATCTCCCAACAATCCAAAACAAG----CCAGCAGCTGGCTC---TACGTATCACACAGGCTACATCTTGGTTATCG----GTTCCAAAACGTATTGGAA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1626181 154 + 5364348 GCTCCCTGGGG-TC-AGAGGGCAGCCTCTGT--TCCCCCAAA--CTCCCTTCCCCATTCCCCCATAACACATCCCCACAATCCCAAACAAG----CCAGCAGCTGGCTC---TATGTATCACACAGGCTACATCTTGGTAGCCAAGATGTTCCAAAACGTGTTGGAA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4346760 146 + 7922563 CCTTACTAGGG-TTAAGAGGGGACCCTCCTT--TCCCCTAAAAGCCCCCTTTCCCTTTCTTCCAAAACAC----------TCCACAGTGGA----GGAGCAGCTTGCTCTATTATTTCCCACACAGGCTACATCTTGGTTATCC----TTTCCAAAATGCATGGTAA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33194491 117 - 38964690 CCTTTGTAGGGCTC-AGAGAG-ACCCTCCCT--TCCCTCAGG-------------------------CACACCCCAGC-ATCCATAGTTAG----CAAGCAGCTTGCTC---TGTATGTTACAC---------TTTGGTGATCA----GTTCCAAAATGCACTGTAA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 886189 147 - 1116856 ---ACCAGAGT-TA-AGGGGGACCCCTCCTTTGTCTTCAGAG--CCCCCTTACCCATTC-CCCAAAACACATTCCAACAATCCACAGTTAG----CGAGCAGCTT-CCC---TAGATATTATGCATGCTGCATTTTAGTCATCA----GTTCCAAAATGCATTGCAA i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9508556 196 - 31815103 I e mm10.chr5 124839126 309 + 151834684 I e proCoq1.NW_012154285v1 6762333 146 - 9870158 I a score=17290.000000 s hg38.chr12_KI270834v1_alt 116658 1 + 119498 A s panTro5.chr12 127402253 1 + 137163284 A i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752556 1 + 135337776 A i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8266130 1 - 8369578 A i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97924174 1 + 106955855 A i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124039225 1 + 133663169 A i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128287416 1 + 137757926 A i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685907 1 - 16319837 A i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309802 1 + 20526591 A i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281576 1 + 128539186 A i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632741 1 + 6255621 A i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4659230 1 - 8658521 A i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114865143 1 + 124281992 A i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 504384 1 - 9212255 A i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2923380 1 + 4466143 A i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1626335 1 + 5364348 A i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6762479 1 - 9870158 A i proCoq1.NW_012154285v1 I 146 C 0 s otoGar3.GL873618 4346906 1 + 7922563 A i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33194608 1 - 38964690 A i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 886336 1 - 1116856 A i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9508556 196 - 31815103 I e mm10.chr5 124839126 309 + 151834684 I a score=119921.000000 s hg38.chr12_KI270834v1_alt 116659 7 + 119498 TTCTAAC s panTro5.chr12 127402254 7 + 137163284 TTCTAAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752557 7 + 135337776 TTCTAAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8266131 7 - 8369578 TTCTAAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97924175 7 + 106955855 TTCTAAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124039226 7 + 133663169 TTCTAAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128287417 7 + 137757926 TTCTAAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685908 7 - 16319837 TTCTAAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309803 7 + 20526591 TTCTAAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281577 7 + 128539186 TTCTAAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632742 7 + 6255621 TTCTAAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4659231 7 - 8658521 TTCTAAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114865144 7 + 124281992 TTCTAAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 504385 7 - 9212255 TTCTAAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2923381 7 + 4466143 TTCTAAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1626336 7 + 5364348 TTCTAAC i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9508752 7 - 31815103 TTCTAGC i micMur3.chr21 I 196 C 0 s proCoq1.NW_012154285v1 6762480 7 - 9870158 TTCTAAC i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4346907 7 + 7922563 TTGTAAC i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33194609 7 - 38964690 TCCTAAC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 886337 7 - 1116856 GTCTATC i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124839126 309 + 151834684 I a score=809821.000000 s hg38.chr12_KI270834v1_alt 116666 46 + 119498 CATTGTATTTTAATCTCTTAAGTCCTCAGTATGCCAAGAAAAGGCT s panTro5.chr12 127402261 46 + 137163284 CATTGTATTTTAATCTCTTAAGTCCTCAGTATGCCAAGAAAAGGCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752564 46 + 135337776 CATTGTATTTTAATCTCTTAAGTCCTCAGTATGCCAAGAAAAGGCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8266138 46 - 8369578 CATTGTATTTTAATCTCTTAAGTCCTCAGTATGCCAAGAAAAGGCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97924182 46 + 106955855 CATCGTATTTTAATCTCTTAAGTCCTCAGTATGCCAAGAAAAGGCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124039233 46 + 133663169 CATTGTATTTTAATCTCTTAAGTCCTCAGTATGCCAAGAAAAGGCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128287424 46 + 137757926 CATTGTATTTTAATCTCTTAAGTCCTCAGTATGCCAAGAAAAGGCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685915 46 - 16319837 CATTGTATTTTAATCTCTTAAGTCCTCAGTATGCCAAGAAAAGGCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309810 46 + 20526591 CATTGTATTTTAATCTCTTAAGTCCTCAGTATGCCAAGAAAAGGCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281584 46 + 128539186 CATTGTATTTTAATCTCTTAAGTCCTCAGTATGCCAAGAAAAGGCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632749 46 + 6255621 CATTGTATTTTAATCTCTTAAGTCCTCAGTATGCCAAGAAAAGGCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4659238 46 - 8658521 CATTGTATTTTAATCTCTTAAGTCCTCAGTATGCCAAGAAAAGGCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114865151 46 + 124281992 CACTGTATTTTAATCTCTTAAGTCCTCAGCATGCCAAGGAAAGGCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 504392 46 - 9212255 CATTGTATTTTAATCTCCTAAGTCCTCAGCATGCCAAGGAAAGGCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2923388 46 + 4466143 CATTGTATTTTAATCTCTTAAGTCCTCAGCATGCCAAGGAAAGGCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1626343 46 + 5364348 CATTGTATTTTAATCTCTTAAGTCCTCAGCATGCCAAGGAAAGGCT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9508759 46 - 31815103 CATTGTATTTTAATCCTTTAAGTCTTCAGTATGCCAAGAAAAGGCT i micMur3.chr21 C 0 C 0 s proCoq1.NW_012154285v1 6762487 46 - 9870158 CATTGTATTTCAACCCTTTACGTCCTCAGTATGCCAAGAAAAGGCT i proCoq1.NW_012154285v1 C 0 I 169 s otoGar3.GL873618 4346914 46 + 7922563 AATTTTATTTTGATCTTTTAAGTCCTCAGTATGCCAAGGAAAGGTT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124839435 46 + 151834684 CACTGTGGCTGAGTACCGCAGGCATCTGCTGCTCTAGGGCAAGGCT i mm10.chr5 I 309 I 1 s canFam3.chr26 33194616 46 - 38964690 CATTGCATTTTGATCTTCTAAGTCCTCAGTATGCCAAGAAATGGCT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 886344 45 - 1116856 CATT-TATTTTGATCTTTGAAAACCTCAGGATGCCAAGAAAATGCT i dasNov3.JH568189 C 0 C 0 a score=34580.000000 s hg38.chr12_KI270834v1_alt 116712 2 + 119498 TT s panTro5.chr12 127402307 2 + 137163284 TT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752610 2 + 135337776 TT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8266184 2 - 8369578 TT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97924228 2 + 106955855 TT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124039279 2 + 133663169 TT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128287470 2 + 137757926 TT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685961 2 - 16319837 TT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309856 2 + 20526591 TT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281630 2 + 128539186 TT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632795 2 + 6255621 TT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4659284 2 - 8658521 TT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114865197 2 + 124281992 TT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 504438 2 - 9212255 TT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2923434 2 + 4466143 TT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1626389 2 + 5364348 TT i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9508805 2 - 31815103 TT i micMur3.chr21 C 0 I 171 s otoGar3.GL873618 4346960 2 + 7922563 TT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33194662 2 - 38964690 TT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 886389 2 - 1116856 TT i dasNov3.JH568189 C 0 C 0 e mm10.chr5 124839481 1 + 151834684 I e proCoq1.NW_012154285v1 6762533 169 - 9870158 I a score=869479.000000 s hg38.chr12_KI270834v1_alt 116714 78 + 119498 GCAGCTTTA-TGCTTAGTGCATCTTGATTATGCAATG------AGGATGATATA-AGGCATTCAGAT------GGACTCCTGCAACGATGAT s panTro5.chr12 127402309 78 + 137163284 GCAGCTTTA-TGCTTAGTGCATCTTGATTATGCAATG------AGGATGATATA-AGGCATTCAGAT------GGACTCCTGCAACGATGAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752612 78 + 135337776 GCAGCTTTA-TGCTTAGTGCATCTTGATTATGCAATG------AGGATGATATA-AGGCATGCAAAT------GGACTCCTGCAACGATGAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8266186 78 - 8369578 GCAGCTTTA-TGCTTAGTGCATCTTGATTATGCAATG------AGGATGATATA-AGGCATTCAGAT------GGACTCCTGCAACGATGAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97924230 78 + 106955855 GCAGCTTTA-TGCTCAGTGCATCTTGATTATGCAATG------AGGATGATATA-AGGCATTCAGAT------GGACTCCTGCAATGACAAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124039281 78 + 133663169 GCAGCTTTA-TGCTCAGTGCATCTTGATTATGCAATG------AGGATGATACA-AGGCATTCAGAT------GGACTCCTGCAATGACGAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128287472 78 + 137757926 GCAGCTTTA-TGCTCAGTGCATCTTGATTATGCAATG------AGGATGATACA-AGGCATTCAGAT------GGACTCCTGCAATGACGAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10685963 78 - 16319837 GCAGCTTTA-TGCTCAGTGCATCTTGATTATGCAATG------AGGATGATACA-AGGCATTCAGAT------GGACTCCTGCAATGACGAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309858 78 + 20526591 GCAGCTTTA-TGCTCAGTGCATCTTGATTATGCAATG------AGGATGATACA-AGGCATTCAGAT------GGACTCCTGCAATGACGAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281632 78 + 128539186 GCAGCTTTA-TGCTCAGTGCATCTTGATTATGCAATG------AGGATGATATA-AGGCATTCAGAT------GGACTCCTGCAATGACGAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632797 78 + 6255621 GCAGCTTTA-TGCTCAGTGCATCTTGATTATGCAATG------AGGATGATATA-AGGCATTCAGAT------GGACTCCTGCAATGACGAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4659286 78 - 8658521 GCAGCTTTA-TGCTCAGTGCATCTTGATTATGCAATG------ATGATGATATA-AGGCATTCAGAT------GGACTACTGCAATGACGAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114865199 78 + 124281992 GCAGCTTCA-CGTTCACTGCATCTTGATTATGCAATG------AGGGTGGTATA-AGGCATTCGGAT------GGACTCCTGCGATGGCAAT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 504440 78 - 9212255 GCAGCTTCA-TGTTCACTGCATCTTGATTATGCAATG------AGGGTGACATA-AGGCATTGGGAT------GGACTCCTGCGATGACAAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2923436 78 + 4466143 GCAGCTTCA-TGTTCACTGCATCTTGATTATGCAATG------AGGGTGATATA-AGGCATTCGGAT------GGACTCCTGTGATGGCAAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1626391 78 + 5364348 GCAGCTTCA-TGCTCACTGCATCTTGATTATGCAATG------AGGGTGATATA-AGGCATTTGGAT------GGACTCCTGCGATGGCAGT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4346962 61 + 7922563 GCAGCTTCA--ACTCAGTGTGTTTCCATTATGCAAT---------------------ACACTCACAT------GGACTCCCATGAGGACA-- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124839482 89 + 151834684 GCAGCTGTG-TGCCCAGTGCTTCC--ATCATACTGTGCAGAACACGGTCACTTGCAGGTGTGTGGGTCACCAAGGATTAATCATGTGGCCAT i mm10.chr5 I 1 C 0 s canFam3.chr26 33194664 77 - 38964690 GCAGCTTTA-CACTTGGTACATGTCGATTAGGCAAAC------A-GATGAGGGA-AGACACTGGAAT------GGATTCCAGCAATGGTGGG i canFam3.chr26 C 0 I 92 s dasNov3.JH568189 886391 74 - 1116856 AGAGCTTTAATGCTTGGTGGATTTCAACTATGCAGTG------AACATGAGGTA-AGGTATGTGAAT------GGAC--CAGCAATGCT--- i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9508807 171 - 31815103 I e proCoq1.NW_012154285v1 6762533 169 - 9870158 I a score=237199.000000 s hg38.chr12_KI270834v1_alt 116792 29 + 119498 -GGGAGCT------------GG-----------GGGCAGGGCAG--GCCTAGC----AC--------------------------------------------------------------- s panTro5.chr12 127402387 29 + 137163284 -GGGAGCT------------GG-----------GGGCAGGGCAG--GCCTAGC----AC--------------------------------------------------------------- i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752690 29 + 135337776 -GGGAGCT------------GG-----------GGGCAGGGCAG--GCCTAGC----AC--------------------------------------------------------------- i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8266264 29 - 8369578 -GGGAGCT------------GG-----------GGGCAGGGCAG--GCCTAGC----AC--------------------------------------------------------------- i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97924308 29 + 106955855 -GGGACCT------------GG-----------GGGCAGGGCAG--TCCTAGT----AC--------------------------------------------------------------- i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124039359 29 + 133663169 -GGGAGCT------------GG-----------GGGCAGGGCAG--GCCTAGC----AC--------------------------------------------------------------- i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128287550 29 + 137757926 -GGGAGCT------------GG-----------GGGCAGGGCAG--GCCTAGC----AC--------------------------------------------------------------- i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10686041 29 - 16319837 -GGGAGCT------------GG-----------GGGCAGGGCAG--GCCTAGC----AC--------------------------------------------------------------- i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309936 29 + 20526591 -GGGAGCT------------GG-----------GGGCAGGGCAG--GCCTAGC----AC--------------------------------------------------------------- i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281710 29 + 128539186 -GGGAGCT------------GG-----------GGGCAGGGCAG--GCCTAGC----AC--------------------------------------------------------------- i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632875 29 + 6255621 -GGGAGCT------------GG-----------GGGCAGGGCAG--GCCTAGC----AC--------------------------------------------------------------- i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4659364 29 - 8658521 -GGGAGCT------------GG-----------GGGCAGGGCAG--GCCTAGC----AC--------------------------------------------------------------- i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114865277 28 + 124281992 -GGGAGCT-------------G-----------GGGCAGGGCAG--GCCTAGC----GT--------------------------------------------------------------- i calJac3.chr9 C 0 I 1 s saiBol1.JH378194 504518 28 - 9212255 -GGGAGCT-------------G-----------GGGCAGGGCAG--GCCTAGT----GT--------------------------------------------------------------- i saiBol1.JH378194 C 0 I 1 s cebCap1.NW_016107484v1 2923514 28 + 4466143 -GGGAGCT-------------G-----------GGGCAGGGCAG--GCCCAGT----GT--------------------------------------------------------------- i cebCap1.NW_016107484v1 C 0 I 1 s aotNan1.NW_018491581v1 1626469 28 + 5364348 -GGGAGCT-------------G-----------GGGCAGGACAG--GCCTAGC----GT--------------------------------------------------------------- i aotNan1.NW_018491581v1 C 0 I 1 s otoGar3.GL873618 4347023 46 + 7922563 -GGGAGCT------------GGCGAGGGCCACTGGGCCAGATGGTTATCCAGCCTCTGC--------------------------------------------------------------- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124839571 26 + 151834684 -ATCAGCA------------TG-----------GGG---AGTGG--GCCTCGT----GC--------------------------------------------------------------- i mm10.chr5 C 0 C 0 s dasNov3.JH568189 886465 105 - 1116856 AAGGGTCTAAACATCATATTGG-----------AAGCAGAGAAG--AATTAGA----AAAGAATAAAATCCCACTCTTCACGCTTCACCTGGAGAAACTGGGACAGCTTCTGATCCAGCCAC i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9508807 171 - 31815103 I e proCoq1.NW_012154285v1 6762533 169 - 9870158 I e canFam3.chr26 33194741 92 - 38964690 I a score=535896.000000 s hg38.chr12_KI270834v1_alt 116821 65 + 119498 ATTCTGACGCTGGGCT---------CTGCCGTGCCCCAT-AGCCGCC--------------C--CCC-----GCCTGCCCGGG---CCTGCT-----------------CCCCGAT s panTro5.chr12 127402416 65 + 137163284 ATTCTGACGCTGGGCT---------CTGCCGTGCCACAT-AGCTGCC--------------C--CCC-----GCCTGCCCGGG---CCTGCT-----------------CCCCGAT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752719 65 + 135337776 ATTCTGACGCTGGGCT---------CTGCCGTGCCCCAT-AGCTGCC--------------C--CCT-----GCCTGCCCGGG---CCTGCT-----------------CCCCGAT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8266293 65 - 8369578 ATTCTGACGCTGAGCT---------CTGCCGTGCCCCAT-AGCTGCC--------------C--CCC-----GCCTGCCTGGG---CCTGCT-----------------CCCCGAT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97924337 65 + 106955855 ATTCTGATGCTGGGCT---------CTGCCGTGCCCCAT-AGCTGTC--------------C--CCC-----GCCTGCCCGGG---CCTGCT-----------------CCCGGAT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124039388 65 + 133663169 GTTCTGGCGCTGGGCT---------CTGCTGTGCCCCGT-AGCTGCC--------------C--CCC-----GCCTGCTTGGG---CCTGCT-----------------CCCCGAT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128287579 65 + 137757926 GTTCTGGCGCTGGGCT---------CTGCTGTGCCCCGT-AGCTGCC--------------C--CCC-----GCCTGCTCGGG---CCTGCT-----------------CCCCGAT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10686070 65 - 16319837 GTTCTGGCGCTGGGCT---------CTGCCGTGCCCCGT-AGCTGCC--------------C--CCC-----GCCTGCTCGGG---CCTGCT-----------------CCCCGAT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12309965 65 + 20526591 GTTCTGGCGCTGGGCT---------CTGCCGTGCCCCAT-AGCTGCC--------------C--CCC-----GCCTGCTCGGG---CCTGCT-----------------CCCCGAT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281739 65 + 128539186 GTTCTGGCGCTGGGCT---------CTGCCGTGCCCCAT-AGCTGCC--------------C--CCC-----GCCTGCTCGGG---CCTGCT-----------------CCCCGAT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632904 65 + 6255621 GTTCTGGCGCTGGGCT---------CTGCCGTGCCCCAT-AGCTGCC--------------C--CCC-----GCCTGCTCGGG---CCTGCT-----------------CCCCGAT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4659393 65 - 8658521 GTTCTGACGCTGGGCT---------CTGCCGTGCCCCAT-AGCTGCC--------------C--CCC-----GCCTGCTCGGG---CCTGCT-----------------CCCCAAT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114865306 64 + 124281992 GTCCTGACGCTGGGCT---------CTGCCATGCCCCAC-AGCTGCT--------------C--TGC------CTTCCCCGGG---CCCGCT-----------------CCCTGGC i calJac3.chr9 I 1 C 0 s saiBol1.JH378194 504547 64 - 9212255 GTCCTGACGCTGGGCT---------CTGCCGTGCCCCAC-AGCTGCT--------------C--TGC------CTTCCCCGGG---CCCGCT-----------------CCCTGGC i saiBol1.JH378194 I 1 C 0 s cebCap1.NW_016107484v1 2923543 64 + 4466143 GTCCTGATGCTGGGCT---------CTGCTGTGCCCCAC-AGCTTCT--------------C--TGC------CTTCCCCGGG---CCCACT-----------------CCCTGGC i cebCap1.NW_016107484v1 I 1 C 0 s aotNan1.NW_018491581v1 1626498 64 + 5364348 GTCCTGACGCTGGGCT---------CTGCAGTGCCCCAC-AGCTGCT--------------C--TGC------CTTCCCCGGG---CCCGCT-----------------CCTTGGC i aotNan1.NW_018491581v1 I 1 C 0 s otoGar3.GL873618 4347069 37 + 7922563 GACCTGCCACCAGGCT---------CTGCTGTGCC--------------------------------------CCTGCCCCAG---T----------------------------- i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124839597 61 + 151834684 AGCAGCGGACCCGACT---------CCACA--TCCCGAC-AGTGGTC--------------TGGTCA-----GCAGCCATGAG---CCTGCA-----------------CCC---- i mm10.chr5 C 0 C 0 s canFam3.chr26 33194833 79 - 38964690 GTCCCGACAACGGGCC---------CTGCTTTGCTCCAC-AGC------------------C--CCG-----GCAAGCCTGGAGGCCCTGCTCAGGAGGTCGTGTGGGGCCCTG-- i canFam3.chr26 I 92 C 0 s dasNov3.JH568189 886570 94 - 1116856 TGTCTGAAGCTGTCCTTATACCAGACTGCTTTGCTCTACAAGCCGTCGGCAAGCCCCGGGAC--CCCGGGAAGTCTGTCCAGG---CGTGGC-----------------CCCCGCG i dasNov3.JH568189 C 0 C 0 e micMur3.chr21 9508807 171 - 31815103 I e proCoq1.NW_012154285v1 6762533 169 - 9870158 I a score=14275.000000 s hg38.chr12_KI270834v1_alt 116886 1 + 119498 G s panTro5.chr12 127402481 1 + 137163284 G i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752784 1 + 135337776 G i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8266358 1 - 8369578 G i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97924402 1 + 106955855 G i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124039453 1 + 133663169 G i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128287644 1 + 137757926 G i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10686135 1 - 16319837 G i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12310030 1 + 20526591 G i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281804 1 + 128539186 G i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632969 1 + 6255621 G i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4659458 1 - 8658521 G i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114865370 1 + 124281992 A i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 504611 1 - 9212255 G i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2923607 1 + 4466143 A i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1626562 1 + 5364348 G i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9508978 1 - 31815103 G i micMur3.chr21 I 171 C 0 s otoGar3.GL873618 4347106 1 + 7922563 G i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33194912 1 - 38964690 G i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 886664 1 - 1116856 G i dasNov3.JH568189 C 0 I 18 e mm10.chr5 124839658 0 + 151834684 C e proCoq1.NW_012154285v1 6762533 169 - 9870158 I a score=3315442.000000 s hg38.chr12_KI270834v1_alt 116887 165 + 119498 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCGGAGTGCAGCCCCTTGAGCGTGCTGGCATGCTCCCGCTGAAGGAACAGGAGGTTCTTCTGTGCGCTGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGAGGACCTGTGGGTAACACAG s panTro5.chr12 127402482 165 + 137163284 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCGGAGTGCAGCCCCTTGAGCGTGCTGGCATGCTCCCGCTGAAGGAACAGGAGGTTCTTCTGTGCGCTGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGAGGACCTGTGGGTAACACAG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752785 165 + 135337776 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCGGAGTGCAGCCCCTTGAGCGTGCTGGCATGCTCCCGCTGAAGGAACAGGAGGTTCTTCTGTGCGCTGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGAGGACCTGTGGGTAACACAG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8266359 165 - 8369578 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCGGAGTGCAGCCCCTTGAGCGTGCTGGCATGCTCCCGCTGAAGGAACAGGAGGTTCTTCTGTGCGCTGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGAGGACCTGTGGGTAACACAG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97924403 165 + 106955855 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCGGAGTGCAGCCCCTTGAGCGTGCTGGCATGCTCCCGCTGAAGGAACAGGAGATTCTTCTGTGCGCTGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGGGGACCTGTGGGTAACACAG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124039454 165 + 133663169 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCGGAGTGCAGCCCCTTGAGTGTGCTGGCATGCTCCCGCTGAAGGAACAGGAGGTTCTTCTGTGCGCTGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGGGGACCTGTGGGTAACACAG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128287645 165 + 137757926 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCGGAGTGCAGCCCCTTGAGTGTGCTGGCATGCTCCCGCTGAAGGAACAGGAGGTTCTTCTGTGCGCTGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGGGGACCTGTGGGTAACACAG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10686136 165 - 16319837 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCGGAGTGCAGCCCCTTGAGTGTGCTGGCATGCTCCCGCTGAAGGAACAGGAGGTTCTTCTGTGCGCTGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGGGGACCTGTGGGTAACACAG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12310031 165 + 20526591 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCGGAGTGCAGCCCCTTGAGTGTGCTGGCATGCTCCCGCTGAAGGAACAGGAGGTTCTTCTGTGCGCTGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGGGGACCTGTGGGTAACACAG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281805 165 + 128539186 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCGGAGTGCAGCCCCTTGAGTGTGCTGGCATGCTCCCGCTGAAGGAACAGGAGGTTCTTCTGTGCACTGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGGGGACCTGTGGGTAACACAG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 632970 165 + 6255621 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCGGAGTGCAGCCCCTTGAGTGTGCTGGCATGCTCCCGCTGAAGGAACAGGAGGTTCTTCTGTGCGCTGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGGGGACCTGTGGGTAACACAG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4659459 165 - 8658521 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCGGAGTGCAGCCCCTTGAGCGTGCTGGCATGCTCCCGCTGAAGGAACAGGAGGTTCTTCTGTGCGCTGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGGGGACCTGTGGGTAACACAG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114865371 164 + 124281992 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCAGCATGCAGCCCCTTGAGCGTGCTGGCATGCTCCCGCTGAAGGAACAGGAGGTTCTTCTGTGCGCTGTGCAACTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAG-GGACCTGTGGGGAACACAG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 504612 164 - 9212255 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCAGCATGCAGCCCCTTGAGCGTGCTGGCGTGCTCCCGCTGAAGGAACAGGAGGTTCTTCTGTGCGCTGTGCAACTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAG-GGACCTGTGGGGAACACAG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2923608 164 + 4466143 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCAGCATGCAGCCCCTTGAGCGTGCTGGCGTGCTCCCGCTGAAGGAACAGGAGGTTCTTCTGTGCGCTGTGCAACTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAG-GGACCTGTGGGGAACACAG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1626563 164 + 5364348 TACCTGTGCAGTGCTGCTGCAGCCGCCTGATCTCAGCATGGAGCCCCTTGAGCGTGCTGGCGTGCTCCCGCTGAAGGAACAGGAGGTTCTTCTGTGCACTGTGCAACTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAG-GGACCTGTGGGGAACACAG i aotNan1.NW_018491581v1 C 0 C 0 s micMur3.chr21 9508979 165 - 31815103 TACCTGTGCAGTGCTGCTGCAGTCGCCGGATCTCGGCGTGCAGCCCCTTGAGCGTGCTGGCGTGCTCCCGCTGCAGGAATAAGAGGTTCTTCTGCGCACTGTGTAACTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGGTGACCTGTGGGAAACACAG i micMur3.chr21 C 0 N 0 s proCoq1.NW_012154285v1 6762702 165 - 9870158 TACCTGTGCAGTGTTGCTGCAGTCGCCGGATCTCGGCGTGCAGCCCCTTGAGTGTGCTGGCGTGCTCCCGCTGAAGGAACAAGAGGTTCTTCTGTGCACTGTGCAACTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGGTGACCTGTGGGAAACACAG i proCoq1.NW_012154285v1 I 169 C 0 s otoGar3.GL873618 4347107 165 + 7922563 TACCTGTGCAGTGTTGCTGTAGCCGCCTGATCTCAGCGTGCAGCCCCTTGAGCGTGCTGGCATGCTCTCGCTGAAGGAACAAGAGGTTCTTCTGCGCACTGTGCAACTGGTTCTCCAGGTTTGTGGTTGCCATGCTGACATCCAGGTGATCTGAGGGAAACACAG i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124839658 164 + 151834684 -ACCTGTGCAGTGCTGCTGCAGCCGCCGGATCTCGGCGTGCAGCCCCTTGAGTGTGCTGGCGTGCTCCCGCTGGAGGAAGAGCAGGTTCTTCTGTGCACTGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGGTGACCTACCGGAAACATAA i mm10.chr5 C 0 I 1 s canFam3.chr26 33194913 163 - 38964690 TACCTGTGCAGTGTTGCTGCAGCCGCCTGATCTCGGCGTGCAGCCCCTTGAGGGTGCTGGCGTGTTCCCGCTGAAGGAACAGGAGGTTCTTCTGGGCACTGTGCAACTGGTTCTCCAGGTTTGTGGCTGCCATGGTGACATCCAGATGACCTGCGAGAAACAG-- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 886683 165 - 1116856 TACCTGTGCAGTGCTGCTGCAGGCGCCTGATCTCAGCGTGCAGCCCCTTGAGTGTGCTGGCGTGTTCCCGCTGAAGGAACAACAGGTTCTTCTGTGCACTTTGCAACTGGTTCTCCAGATTTGTGGCTGCCATGCTGACATCCAGATGACCTGTGGGAAACACAG i dasNov3.JH568189 I 18 C 0 a score=219369.000000 s hg38.chr12_KI270834v1_alt 117052 14 + 119498 ACCCTGGCTGCGGT s panTro5.chr12 127402647 14 + 137163284 ACCCTGGCTGCGGT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752950 14 + 135337776 ACCCTGGCTGCGGT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8266524 14 - 8369578 ACCCTGGCTGCGGT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97924568 14 + 106955855 ACCCTGGCTGCGGT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124039619 14 + 133663169 ACCCTGGCTGCGGT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128287810 14 + 137757926 ACCCTGGCTGCGGT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10686301 14 - 16319837 ACCCTGGCTGCGGT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12310196 14 + 20526591 ACCCTGGCTGCGGT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281970 14 + 128539186 ACCCTGGCTGCGGT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 633135 14 + 6255621 ACCCTGGCTGCGGT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4659624 14 - 8658521 ACCCTGGCTGCGGT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114865535 14 + 124281992 ACCCTGGCTACCGT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 504776 14 - 9212255 ACCCTGGCTACTGT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2923772 14 + 4466143 ACCCTGGCTACCAT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1626727 14 + 5364348 ACCCTGGCTACCGT i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6762867 14 - 9870158 ACCCTGGTTGCTGT i proCoq1.NW_012154285v1 C 0 C 0 s otoGar3.GL873618 4347272 14 + 7922563 ACCCTGGTTGCTAT i otoGar3.GL873618 C 0 C 0 s mm10.chr5 124839823 14 + 151834684 ACTCTGGTCACTGT i mm10.chr5 I 1 N 0 s canFam3.chr26 33195076 14 - 38964690 ACCCTGGTGGCTGT i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 886848 14 - 1116856 ACCCTGGTCACCAT i dasNov3.JH568189 C 0 C 0 a score=96616.000000 s hg38.chr12_KI270834v1_alt 117066 6 + 119498 GCCTGA s panTro5.chr12 127402661 6 + 137163284 GCCTGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752964 6 + 135337776 GCCTGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8266538 6 - 8369578 CCCTGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97924582 6 + 106955855 CCCTGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124039633 6 + 133663169 CCCTGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128287824 6 + 137757926 CCCTGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10686315 6 - 16319837 CCCTGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12310210 6 + 20526591 CCCTGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281984 6 + 128539186 CCCTGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 633149 6 + 6255621 CCCTGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4659638 6 - 8658521 CCCTGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114865549 6 + 124281992 CCCTGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 504790 6 - 9212255 CCCTGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2923786 6 + 4466143 CCCTGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1626741 6 + 5364348 CCCTGA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6762881 6 - 9870158 CCCTGA i proCoq1.NW_012154285v1 C 0 I 780 s otoGar3.GL873618 4347286 6 + 7922563 CTCTGA i otoGar3.GL873618 C 0 I 3 s canFam3.chr26 33195090 6 - 38964690 CCCTGA i canFam3.chr26 C 0 I 2 s dasNov3.JH568189 886862 6 - 1116856 CCCTGA i dasNov3.JH568189 C 0 C 0 a score=8509982.000000 s hg38.chr12_KI270834v1_alt 117072 785 + 119498 ---AGAGGGTCCCAGG--------------------------G---------------------------CTGCCTGCCCTCCTTGG---------------CTCTGGGTGCAGAGGGGTGTGCGCCTCCCAGGAGAGAGCA-GAAGGAAACC--ACGGCTCCTGAAGGGCAG-GGTGTGGGGGCACCAGGGCTACATTCCCATC-ACTGCAGGGAGGCCCCAGGCCAGGGACG-GCAGCCTCTGCTTCCCGAACGC-----------------------------------------CTTGGGG------TGTG---CCCTAGCACCTAGCACGATGCCTGGCACATGAATGAGTGAGGCCCACTCCAGAGTACAAAGtcatttccctttactcatgaggaaacagatcaagagaggcagattcgcgagcctgggg---------tcacacagccagtgaggtatggagcagggattctaatccagggacccttggttccaaatcctgtcctctccacgcaccacctcaccccAACAGACTGTGACT-GACC-AAATCACG----CCCAAAAGATTTCCCTGACCA-----GGAAGCACTGACAGCTTCCTCATGGGAAAAGCTGGCACCTGGGAAATGGGCCAAACATTTCCTCTAAATGGCATCTGGAGCCAGCCAAAGT-------AGGAGGGAGAGATGGGCTGAATTCCAGAGGGAAGCCCCCTGCACTTCACAGCACTGAGAGGAG-CCACAGATCCTTCTTGGGAAGGT-CTGAGAACGTATCTCATGGGGCCAGGGGGTGGT-GCAGGTGTCT-GGAGTCTGTCCCC--AATGCTTGGCCCCTCCCAGCCC----C--AGCTTCCAGCATCTGATGCTCACTCAGGGCCCCAGA--CTCTACCTTCATCGTAACTCGAGAAATGTGGTGAAGTCA--TG-GGTCTTT s panTro5.chr12 127402667 783 + 137163284 ---AGAGGGTCCCAGG--------------------------G---------------------------CTGCCTGCCCTCCTTGG---------------CTCTGGGTGCAGAGGGGTGTGCACCTCCCAGGAGAGAGCA-GAAGGAAACC--ACGGTGCCTGAAGGGCAG-GGTGTGGGGGCACCAGGGCTACATTCCCATC-ACTGCAGGGAGGCCCCAGGCCAGGGACG-GCAGCCTCTGCTTCCCGAATGC-----------------------------------------CTTGGGg------tgtg---ccctagcacctagcacgatgcctggcacatgaatgagtgAGGCCCACTCCAGAGTACAAAGTCACttccctttactcatgaggaaacagatcaagagaggcagattcgcgagcctgggg---------tcacacagccagtgaggtatggagcagggattctaatccagggacccctggttccaaatcctgtcctctccacgcaccacctcaccccAACAGAC--TGACT-GACC-AAATCACG----CCCAAAAGATTTCCCTGACCA-----GGAAGCACTGACAGCTTCCTCATGGGAAAAGCTGGCACCTGGGAAATGGGCCAAACATTTCCTCTAAATGGCATCTCGAGCCAGCCAAAGT-------AGGAGGGAGAGATGGGCTGAATTCCAGAGGGAAGCCCCCTGCACTTCACAGCACTGAGAGGAG-CCACAGATCCTTCTTGGGAGGGT-CTGAGAACGTATCTCATGGGGCCAGGGGGTGGT-GCAGGTGTCT-GGAGTCTGTCCCC--AATGCTTGGCCCCTCCCAGCCC----C--AGCTTCCAGCATCTGATGCTCACTCAGGGCCCCAGA--CTCTACCTTCATCGTAACTCGAGAAATGTGGTGAAGTCA--TG-GGTCTTT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125752970 783 + 135337776 ---AGAGGGTCCCAGG--------------------------G---------------------------CTGCCTGCCCTCCTTGG---------------CTCTGGGTGCAGAGGGGTGTGCACCTCCCAGGAGAGAGCA-GAAGGAAACC--ACGGTGCCTGAAGGGCAG-GGTGTGGGGGCACCAGGGCTACATTCCCATC-ACTGTAGGGAGGCCCCAGGCCAGGGACG-GCAGCCTCTGCTTCCCGAACGC-----------------------------------------CTTGGGG------TGTG---CCCTAGCACCTAGCACGATGCCTGGCACATGAATGAGTGAGGCCCACTCCAGagtacaaagtcacttccctttactcatgaggaaacagatcaagagaggcagattcacgagcctgggg---------tcacacagccagtgaggtatggagcagggattctaatccagggacccctggttccaaatcctgtcctctccacgcaccacctcaccccAACAGAC--TGACT-GACC-AAATCACG----CCCAAAAGATTTCCCTGACCA-----GGAAGCACTGACAGCTTCCTCATGGGAAAAGCTGGCACCTGGGAAATGGGCCAAACATTTCCTCTAAATGGCATCTGGAGCCAGCCAAAGT-------AGGAGGGAGAGATGGGCTGAATTCCAGAGGGAAGCCCCCTGCACTTCACAGCACTGAGAGGAG-CCACAGATCCTTCTTGGGAAGGT-CTGAGAACGTATCTCATGGGGCCAGGGGGTGGT-GCAGGTGTCT-GGAGTCTGTCCCC--AATGCTTGGCCCCTCCCAGCCC----C--AGCTTCCAGCATCTGATGCTCACTCAGGGCCCCAGA--CTCTACCTTCATCGTAACTCGAGAAATGTGGTGAAGTCA--TG-AGTCTTT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8266544 785 - 8369578 ---AGAGGGTCCCAGG--------------------------G---------------------------CTGCCTGCCCTCCTTGG---------------CTCTGGGTGCAGAGGGGTGTGCACCTCCCAGGAGAGAGCA-GAAGGAAACC--ACGGCGCCTGAAGGGCAG-GGTGTGGGGGCACCAGGGCTACATTCCCATC-ACTGCAGGGAGGCCCCAGGCCAGACACA-GCAGCCTCTGCTTCCCGAACGC-----------------------------------------CTTGGGg------tgtg---ccctagcacctagcacgatgcctggcacatgaatgagtgAGGCCCACTCCAGAGTACAAAGTCACttccctttactcatgaggaaacagatcaagagaggcagattcgcgagcctgggg---------tcacacagccagtgaggtatggagcagggattctaatccagggacccctggttccaaatcctgtcctctccatgcaccacctcaccccAACAGACTGTGACT-GACC-AAATCACG----CCCAAAAGATTTCCCTGACCA-----GGAAGCACTGACAGCTTCCTCATGGGAAAAGCTGGCACCTGGGAAATGGGCCAAACATTTCCTCTAAATGGCATCTGGAGCCAGCCAAAGT-------AGGAGGGAGAGATGGGCTGAATTCCAGAGGGAAGCCCCCTGCACTTCACAGCACTGAGAGGAG-CCACAGATCCTTCTTGGGAAGGT-CTGAGAACGTATCTCATGGGGCCAGGGGGTGGT-GCAGGTGTCT-GGAGTCTGTACCC--AATGCTTGGCCCCTCCCAGCCC----C--AGCTTCCAGCATCTGATGCTCACTCAGGGCCCCAGA--CTCTACCTTCATCGTAACTCGAGAAATGTGGTGAAGTCA--TG-GGTCTTT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97924588 779 + 106955855 ---AGAGGGTCCCAGG--------------------------G---------------------------CTGCCTGCCCTCCTTGG---------------CTCTGGGTGCAGAGGGGTGTGCACCTCCCAGGAGAGAGCA-GAAGGAAACC--ACGGCGCCTGGAGGGCAG-GGTGCGGGGGCACCAGGGCTACATTCCCAAC-ACTGCAGGGAGGCCCCAGGCCAGGGACG-GCAGCCTCTGCTTCCTGAGCAC-----------------------------------------CTCGGGG------TGTG---CCCTAGCACC-------ATGCCTGGCACATGAATGAGTGAGGCCCACTCCAGagtacaaagtcacttctctttactcatgaggaaacagatcaagagaggcagatttgcgagcctgggg---------tcacacagccagtgaggtatggagcagagattctaatccagggacccctggttcccaatcctgtcctctccacgcaccacctcaccCCAACAGACTGTGACT-GACC-AAATCACT----CCCAAAAGATTTCCCTGACCA-----GGAAGCACTGACAGCTTCCTCATGGGAAAAGCTGGCACCTGGGAAACGGGCCAAACATTTCCTCTAAATGACATCTGGAGCTAGCCAAAGTA------AGGAGGGAGAGCTGGGCTGAATTCCAGAGGGAAGCCCCCTGCACTTCACAGCACAGAGAGGAG-CCACAGATCCTTCTTGGGAAGGT-CTGAGAACGTATCTCATGGGGCCAGGGGGTGGT-GCAGGTGTCT-GGAGTCTGTCCCC--AATGCTTGGCCCCTCCCAGCCC----C--AGCTTCCAGCATCTGATGCTCACTCAGGGCCCCAGA--CTCTACCTTCATCGTAACTCGAGAAATGTGGTGAAGTCA--TG-GGTCTTT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124039639 776 + 133663169 ---AAAGGGTCCCAAG--------------------------G---------------------------CTGCCTGCCCTCCTTGG---------------CTCTGGGTGCAGAAGGGTGTGCACTTCCCAGGAGAGAGCA-GAAGGAAACC--ACAGCGCCTGAAGGGCAG-GGCACGGGGGCACCAGGGCTACACTCCCATC-ACTGCAGGCAGGCCCCAGGCCAGGGACA-GCAGCCTCTGCTTCCTGAGCAC-----------------------------------------CTCAGGG------TGTG---CCCTAGCACTTAGCACCATGCCTCGCACACGAATGAGTGAGGCCCACTCCACCGTACAAAGTCACTTCCCtttactcatgaggaaacagatcaagagaggcagattcgcgagcctgggg---------tcacacagccagtgaggtatggagcagggattctaatccaggga--cccgtttccaaatcctgtcctctccacgcaccacctcaccccAACAGA---------GACC-AAATCACT----CCCAAAAGATTTCCCTGACCA-----GGAAGCACTGACAGCTTCCTCATGGGACAAGTTGGCACCTGGGAAATGGGCCAAACATTTCCTCTAAATGGCATCTGGAGCCAGCCAAAGTA------AGGAGGGAGAGCTGGACTGAATTCCAGAGGGAAGCCCCCTGCACTTCACAGCACAGCGAGGAG-CCACAGATCCTTCTTGGGAAGGT-TTGAGAACGTATCTCATGGGGCCAGGGGGTGGC-GCAGGTGTCT-GGAGTCTGTCCCC--AATGCTTGGCCCCTCCCAGCCC----C--AGCTTCCAGCATCTGATGCTTACTCAGGGCCCCAGA--CTCTACCTTCATCGTAACTCGAGAAATGTGGTGAAGTCA--TG-GGTCTTT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128287830 776 + 137757926 ---AAAGGGTCCCAGG--------------------------G---------------------------CTGCCTGCCCTCCTTGG---------------CTCTGGGTGCAGAAGGGTGTGCACTTCCCAGGACAGAGCA-GAAGGAAACC--ACAGCGCCTGAAGGGCAG-GGCACGGGGGCACCAGGGCTACACTCCCATC-ACTGCAGGCAGGCCCCAGGCCAGGGACA-GCAGCCTCTGCTTCCTGAGCAC-----------------------------------------CTCAGGG------TGTG---CCCTAGCACTTAGCACCATGCCTCGCACACGAATGAGTGAGGCCCACTCCACCGTACAAAGTCACttccctttactcatgaggaaacagatcaagagaggcagattcgcgagcctgggg---------tcacagagccagtgaggtatggagcagggattctaatccaggga--cccgtttccaaatcctgtcctctccacgcaccacctcaccccAACAGA---------GACC-AAATCACT----CCCAAAAGATTTCCCTGACCA-----GGAAGCACTGACAGCTTCCTCATGGGACAAGTTGGCACCTGGGAAATGGGCCAAACATTTCCTCTAAATGGCATCTGGAGCCGGCCAAAGTA------AGGAGGGAGAGCTGGACTGAATTCCAGAGGGAAGCCCCCTGCACTTCACAGCACAGCGAGGAG-CCACAGATCCTTCTTGGGAAGGT-TTGAGAACGTATCTCATGGGGCCAGGGGGTGGC-GCAGGTGTCT-GGAGTCTGTCCCC--AATGCTTGGCCCCTCCCAGCCC----C--AGCTTCCAGCATCTGATGCTTACTCAGGGCCCCAGA--CTCTACCTTCATCGTAACTCGAGAAATGTGGTGAAGTCA--TG-GGTCTTT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10686321 776 - 16319837 ---AAAGGGTCCCAGG--------------------------G---------------------------CTGCCTGCCCTCCTTGG---------------CTCTGGGTGCAGAAGGGTGTGCACTTCCCAGGAGAGAGCA-GAAGGAAACT--ACAGCGCCTGAAGGGCAG-GGCACGGGGGCACCAGGACTACACTCCCATC-ACTGCAGGCAGGCCCCAGGCCAGGGACA-GCAGCCTCTGCTTCCTGAGCAC-----------------------------------------CTCAGGG------TGTG---CCCTAGCACTTAGCACCATGCCTCGCACACGAATGAGTGAGGCCCACTCCACCGTACAAAGTCACttccctttactcatgaggaaacagatcaagagaggcagattcgcgagcctgggg---------tcacacagccagtgaggtatggagcagggattctaatccaggga--cccgtttccaaatcctgtcctctccacgcaccacctcaccccAACAGA---------GACC-AAATCACT----CCCAAAAGATTTCCCTGACCA-----GGAAGCACTGACAGCTTCCTCATGGGACAAGTTGGCACCTGGGAAATGGGCCAAACATTTCCTCTAAATGGCATCTGGAGCCGGCCAAAGTA------AGGAGGGAGAGCTGGACTGAATTCCAGAGGGAAGCCCCCTGCACTTCACAGCACAGCGAGGAG-CCACAGATCCTTCTTGGGAAGGT-TTGAGAACGTATCTCATGGGGCCAGGGGGTGGC-GCAGGTGTCT-GGAGTCTGTCCCC--AATGCTTGGCCCCTCCCAGCCC----C--AGCTTCCAGCATCTGATGCTTACTCAGGGCCCCAGA--CTCTACCTTCATCGTAACTCGAGAAATGTGGTGAAGTCA--TG-GGTCTTT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12310216 775 + 20526591 ---AAAGGGTCCCAGG--------------------------G---------------------------CTGCCTGCCCTCCTTGG---------------CTCTGGGTGCAGAAGGGTGTGCACTTCCCAGGAGAGAGCA-GAAGGAAACC--ACAGCGCCTGAAGGGCAG-GGCACGGGGGCACTAGGGCTATACTCCCATC-ACTGCAGGCAGGCCCCAGGCCAGGGACA-GCAGCCTCTGCTTCCTGAGCAC-----------------------------------------CTCAGGG------TGTG---CCCTAGCACTTAGCACCATGCCTCGCACACGAATGAGTGAGGCCCACTCCACCGTACAAAGTCACttccctttactcatgaggaaacagatcaagagaggcagattcgcgagcctgggg---------tcacacagccagtgaggtatggagcagggattctaatccaggga--cccgtttccaaatcctgtcctctccacgcaccacctcaccccAACAGA---------GACC-AAATCACT----CCCAAAAGATTTCCCTGACCA-----GGAAGCACGGACAGCTTCCTCATGGGAAAAGTTGGCACCTGGGAAATGGGCCACACATTTCCTCTAAATGGCATCTGGAGCCGGCCAAAGTA------AGGAGGGAGAGCTGGGCTGAATTCCAGAGGGAAGCCCCCTGCACTTCACAGCACAGAGAGGAG-CCACAGATCCTTCTTGGGAAGGT-TTGAGAACGTATCTCATGGAGCCA-GGGGTGGC-GCAGGTGTCT-GGAGTCTGTCCCC--AATGCTTGGCCCCTCCCAGCCC----C--AGCTTCCAGCATCTGATGCTTACTCAGGGCCCCAGA--CTCTACCTTCATCGTAACTCGAGAAATGTGGTGAAGTCA--TG-GGTCTTT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119281990 774 + 128539186 ---AAAGGGTCCCAGG--------------------------G---------------------------CTGCCTGCCCTCCTTGG---------------CTCTGGGTGCAGAAGGGTGTGCACTTCCCAGGAGAGAGCA-GAAGGAAACC--ACAGCGCCTGAAGGGCAG-GGCGCGGGGGCACCAGGGCTACACTCCCATC-ACTGCAGGGAGGCCCCAGGCCAGGGACA-GCAGCCTCTGCTTCCTGAGCAC-----------------------------------------CTCAGGG------TGTG---CCCTAGCACTTAGCACCATGCCTCGCACACGAATGAGTGAGGCCCACTCCACCGTAC--AGTCACttccctttactcatgaggaaacagatcaagagaggcagattcgcgagcctgggg---------tcacacagccagtgaggtatggagcagggattctaatccaggga--cccatttccaaatactgtcctctccacgcaccacctcaccccAACAGA---------GACC-AAATCACT----CCCAAAAGATTTCCCTGACCA-----GGAAGCACTGACAGCTTCCTCATGGGAAAAGTTGGCACCTGGGAAATGGGCCAAACATTTCCTCTAAATGGCATCTGGAGCCGGCCAAAGGA------AGGAGGGAGAGCTGGGCTGAATTCCAGAGGGAAGCCCCCTGCACTTCACAGCACAGAGAGGAG-CCACAGATCCTTCTTGGGAAGGT-TTGAGAACGTATCTCATGGGGCCAGGGGGTGGC-GCAGGTGTCT-GGAGTCTGTCCCC--AATGCTTGGCCCCTCCCAGCCC----C--AGCTTCCAGCATCTGATGCTTACTCAGGGCCCCAGA--CTCTACCTTCATCGTAACTCGAGAAATGTGGTGAAGTCA--TG-GGTCTTT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 633155 776 + 6255621 ---AAAGGGTCCCAGG--------------------------G---------------------------CTGCCTGCCCTCCTTGG---------------CTCTGGGTGCAGAAGGGTGTGCACTTCCCAGGAGAGAGCA-GAAGGAAACC--ACAGCGCCTGAAGGGCAG-GGCACGGGGGCACCAGGGCTACACTCCCATC-ACAGCAGGCAGGCCCCAGGCCAGGGACA-GCAGCCTCTGCTTCCTGAGCAC-----------------------------------------CTCAGGG------TGTG---CCCTAGCACTTAGCACCATGCCTCGCACACGAATGAGTGAGGCCCACTCCACCGTACAAAGTCACttccctttactcatgaggaaacagatcaagagaggcagattcgcgagcctgggg---------tcacacagccagtgaggtatggagcagggattctaatccaggga--cccgtttccaaatcctgtcctctccacgcaccacctcaccccAACAGA---------GACC-AAATCACT----CCCAAAAGATTTCCCTGACCA-----GGAAGCACTGACAGCTTCCTCATGGGAAAAGTTGGCACCTGGGAAATGGGCCCAACATTTCCTCTAAATGGCATCTGGAGCCGGCCAAAGTA------AGGAGGGAGAGCTGGGCTCAATTCCAGAGGGAAGCCCCCTGCACTTCACAGCACAGAGAGGAG-CCACAGATCCTTCTTGGGAAGGT-TTGAGAACGTATCTCATGGGGCCAGGGGGTGGC-GCAGGTGTCT-GGAGTCTGTCCCC--AATGCTTGGCCCCTCCCAGCCC----C--AGCTTCCAGCATCTGATGCTTACTCAGGGCCCCAGA--CTCTACCTTCATCGTAACTCGAGAAATGTGGTGAAGTCA--TG-GGTCTTT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4659644 783 - 8658521 ---AAAGGGTCCCAGG--------------------------G---------------------------CTGCCTGTCCTCCTTGG---------------CTCTGGGTGCAGAGGGGTGTGCACCTCCCAGGAGAGAGCA-GAAGGAAACC--ACAGCGCCTGAAGGGCAG-GGCGCGGGGGCACCAGGGCTACACTCCCATC-ACTGCAGGGAGGCCCCAGGCCAGGGACA-GCAGCCTCTGCTTCCTGAGCAC-----------------------------------------CTCGGGG------TGTG---CCCTAGCGCTTAGCACCATGCCTCGCACACGAATGAGTGAGGCCCGCTCCACCGTACAAAGTCACttccctttactcatgaggaaacagatc--gagaggcagattcgtgagcctgggg---------tcacacggccagtgaggtatggagcagggattctaatccagggacccccgtttccaaatcctgtcctctccacgcaccacCTCACCCCAACAGACTGTGACT-GACC-AAATCACT----CCCAAAAGATTTCCCGGACCA-----GGAAGCACTGACAGCTTCCTCATGGGAAACGGTGGCACCTGGGAAATGGGCCAAACATTTCCTCTAAATGGCATCTGGAGCCGGCCAAAGTA------AGGAGGGAGAGCTGGGCTGAATTCCAGAGGGAAG-CCCCTGCACTTCACAGCACAGAGAGGAG-CCACAGACCCTTCTTGGGAAGGT-TTGAGAATGTATCTCATGGGGCCAGGGGGTGGC-GCAGGTGTCT-GGAGTCTGTCCCC--AGTGCTTGGCCCCTCCCAGCCC----C--AGCTTCCAGCATCTGATGCTCACTCAGGGCCCCAGA--CTCTACCTTCATCGTAACTCGAGAAATGTGGTGAAGTCA--TG-GGTCTTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114865555 776 + 124281992 ---ATGGGGTTCCAGG--------------------------G---------------------------CTGCCTGCCCTTCTTGG---------------GTCTGGGTGCCGAGGGGCACACGCCCCTCAGGAGAGAGCA-GAAGGAAACC--ACAGTGTCTGGAAGCTGG-GGCACGGGGGCACGAGGGCTAAATTAGCATC-ACTGCTGGGAGGCCTCAGCCCAGGGATG-GCAGCCTCGGCTTCCTGAGTGC-----------------------------------------CTCAGGG------TGTG---CCCTTGCACCTAGCACCACATGGGGCACACGAATGAGTGAGGCCCACGCCAGAGTATAAAGTCACttccctttactcatgaggaaacggatcaagagaggcagattcacgagcctgggg---------tcacacagccagtgaggtatggagcag-gattctaacccaggga-ctctggttccaaatcctgtcctctccacacaccacctcaccccAACAGACTGTGACT-GACC-AAGTCACT----CTTCAAAGATTTCCCTGACCA-----GGAAGCACTGACGGCTTCCTCGTGGGAAAAGCTGGCACCTGGGAAATGGGCCAAACATTTCCTCTAAATGGCATCTGGAGCCAGCCAAAGCA------AGGAGGGAGAGCTGGGCTGAATTCCAGAGGGAAGCCCCCTGCACTTCACAGAGCAGAGAGGAGCCCACAGGTCCTTCTTGGGAAGGT-TCAAGAATGTATCTCATGGGGCCG-GAGTTGGC-ACAGGCATCT-GGAGTCTGTCCCC--AGTG--------CTCCCACCCC----C--GGCTTCCAGCATCCAATGCTCACTCAGGGTCCCAGA--CTCTGCCTTCATCATAACTCGAGAAATGTGGTGAAGTCA--TG-AGTCTTT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 504796 777 - 9212255 ---ACGGGGTTCCAGG--------------------------C---------------------------CTGCCTGCCCTCTTTGG---------------CTCTGGGCGCAGAGGGGCACATGCCTCTCAGGAGAGAGCA-GAAGGAAACC--ACAGTGTCTGGAAGCTGG-GGCACGGGGGCACCAGGGCTAAATTAGCATC-ACTGCTGGGAGGCCCTAGCCCAGGGATG-GCAGCCTCGGCTTCCTGAGTGC-----------------------------------------CTTGGGG------TGTG---CCCTCGAACCTAGCACCATGTGGGGCACACGAATGAGTAAGGCCCACGCCAGAGTATAAAGTCACttccctttactcatgaggaaacagatcaagagagccagattcatgagcctgggg---------tcacacagccagtgaggtacggagcag-gattctaatccaggga-ccctggttccaaatcctgtcctctccacacaccacctcaccccAACAGACTGTGACT-GACC-AAATCACT----CTTGAAAGATTTCCCGGACCA-----GGACGCACTGACAGCTTCCTCGTGGGAAAAGCTGGCACCTGGGAAATGGGCCAAACATTTCCTCTAAATGGCATCTGGAGCCAGCCAAAGCA------AGGAGGGAGAGCTGGGCTGAATTCCAGGGGGAAGCCCCCTGCACTTCACAGCACAGAGAGGAGCCCACAGATCCTTCTTGGGAAGGT-TCAAGAATGTATCTCATGGGGCCGAGGGGTGGC-ACAGGCATCT-GGAGTCTGTCCCC--AGTG--------CTCCCACCCC----C--AGCTTCCAGCATCCAATGCTCACTCAGGGTCCCAGA--CTCCGCCTTCATCGTAACTCGAGAAATGTGGTGAAGTCA--TG-AGTCTTT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2923792 777 + 4466143 ---ACGGGGTTCCAGG--------------------------G---------------------------CTGTCTGCCCTCCTCGG---------------CTCCGGGTGCAGAGGGGTACACGCCTCTCAGGAGAGAGCA-GAAGGAAAGC--ACAGCGTCTGGAAGCTGG-GGCACAGGGGCACCAGGGCTAAATTAGCATC-ACTGCTGGGAGGCCCCAGCCCAGGGACG-GCAGCCTTGGCTTCCTGAGTGC-----------------------------------------CTCGGGG------TGTG---CCCTCGCACCTAGCACCACGTGGGGCACACGAATGAGTAAGGTCCGCGCCAGagtacaaagtcacttccctttactcatgaggaaacagatcaagagaggcagattcacgagcctgggg---------tcacacagctggtgaggtatggagcag-aattctaatccaggga-ccctggttccaaatcctgtcctctccacacaccacctcaccccAACAGACTGTGACT-GACC-AAATCACT----CTCGAAAGATTTCCCTGACCA-----GGAAGCACTGACAGTTTCCTCGTGGGAAAAGCTGGCACCTGGGAAATGGGCCAAACATTTCCTCTAAATGTCATCTGGAGCCAGCCAAAGCA------AGGAGGGAGAGCTGGGCTGAATTCCAGAGGGAAGCCCCCTGCACTTCACAGCATAGAGAGGAGCCCACAGATTCTTCTTGGGAAGGT-TCAAGAATGTATCTCATGGGGCCAGGGGGTGGC-ACAGGCATCT-GGAGTCTGTCCCC--AGTG--------CTCCCACCCC----C--GGCTTCCAGCATCCAATGCTCACTCAGGGTCCCAGA--CTCTGCCTTCATCGTAACTCGAGAAATGTGGTAAAGTCA--TG-AGTCTTT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1626747 775 + 5364348 ---ACGGGGTTCCAGG--------------------------G---------------------------CTGCCTGCCCTCCTTGG---------------CTCTGGGTACAGAGGGG-ACACGCCTCTCAGGAGAGAGCA-GAAGGAAACC--ACAGCGTCTGGAAGCTGT-GGCAC-GGGGCACCAGGGCTAAATTAGCATC-ACTGCTGGGAGGCCCCAGCCCAGGGACG-GCAGCCTCGGCTTCCTGAGTGC-----------------------------------------CTCGGGC------TGTG---CCCTCGCACCTAGCGCCATGTGGGGCACACGAATGAGTAAGGCCCACGCCAGAGTACAAAGTCACttccctttattcatgaggaaacagatcaagagaggcagattcacgagcctgggg---------tcacacagccagtgaggtatggagcag-gattctaatccaggaa-ccctggttccaaatcctgtcctctccacataccacctcaccccAACCGACTGTGACT-GATC-AAATCACT----CTCAAAAGATTTCCCTGACCA-----GGAAGCACTGACAGCTTCCTCGTGGGAAAAGCTGGCTCCTGGGAAATGGGCCAAACATTTCCTCTAAATGGCATCTGGAGCCAGCCAAAGCA------AGGAGGGACAGCTGGGCTGAATTCCAGAGGGAAGCCCCCTGCACTTCACAGCGCAGAGAGGAGCCCACAGATCCTTCTTGGGAACGT-TCAAGAATGTATCTCATGGGGCTGGGGGGTGGC-ACAGGCATCT-GGAGTCTGTCCCC--AATG--------CTCCCACCCC----C--GGCTTCCAGCATTCAATGCTCACTCAGGGTCCCAGA--CTCTGCCTTCATCGTAACTCGAGAAATGTGGTGAAGTCA--TA-AGTCTTT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4347295 712 + 7922563 ---TGATGGTCCCGGG--------------------------GTGATCGGCTGGAAGAGGGAGCTGTCCTCTGCCTGCCCTCCTTGG---------------CTCTGAGTACACAGGGCTGTGCACCTCCAAGGAGAAAGCA-GGAGGAAACC--AATGGAGCCTCAGGGTAG-GGCCTGGG-------GGGCTATATTCCCGTC-ACAGCAGGGAAGCCCAAGTGCAGTGACA-GAAGCCTCTGCTTCCTG------------------------------------------------------------------------------------------GCACACCAGCGAGCTATGCTCAGTGCA--GTCGTAAGTCAcctc-atttgcttatgaggaaataggttaagaggag--gattaatgagtgtgtggggggggcactcacatacccagt-aagtatagagtaggggttcacatccagggc--cctgattctaaatcTTCTCCTTGACATATACCACCTGACCTCAACAGACTGTGACTGGCCC-AAATTAGA----CCTACAAGATTCTACTGTCAA----GGGAGGCACTGAGTGCTTCCTCATAAGGAAACCTGGCA-CTAGGAAATGGGGTGAACGCTTCCTCTAAATGGCACCTGGGGCAGGCCAAAGCA------AGAAGAAGAGGC--------------------------------------------AGAGTGG-CCCCGAATCCTT------------------AGGAATGTCATGGGGCCATGTGGTGGC----TGCATCTGGGGGTCTATCTCC--AGCCCCTTCCCTCCCCCACCCCACTTT--GACTTCCATCATCCAAAGCCCACGAAGAGCCTCAGGTTCTTTGCCTTTACTGTAACTTGAGAAATGTAGTAAAGCCA--AACAGTCTTT i otoGar3.GL873618 I 3 C 0 s canFam3.chr26 33195098 550 - 38964690 ---ACAAGGGTTGAGG--------------------------G-------------------------------------------G---------------GCCAGGCTGGAAGAGGGTG----CCTC------------------------------------------------------------------------------CTGCAGTCAGCCCT------------------CCTTGGCTT----------------------------------------------------TGGGG------AG--------TTGCAGGCAGCATGAGGCTGGGC-------------------------------------------------TCCAGAGG--------CAGAAGAGGTACAT---CAGGCCTGGGC---------TC--------------------------------------------CCTGGTTCCAAATCCTAGTCTTTCCACATGCCACGGAGTTTCAACAGACTGTG----ACCC-AAACTGCTAGACTGCCAAAGATTTCCCTGACAGCGTGGGTACATGCTGACAGCATCCTCACAGGAAAATCGGGCACCTGGGCAATGAGGTGAACATTTCCTCAAAATGGTATTGAGAGCTGGCCAAAGCAAGCAGCAGAAGGAAGAGGCGTGGAGAATTCTAGAAGGAAG-TCCCTGGATTTCAGAG--CTGAGAGGAG-CCCTACATCTTTCTTTGGGAA--------------------AGGGCCATGTGGTGACTATGGGAATCT-GGAGTCTGTCCCT--AAAACCTGCCTCCCACCCACGG----T--GGCTTCAGTCATCAGCAGCTCACTCAGAGCCTCAGATTCTTTGCCTTTACTGTAACTCGAGAAATGTGGTGAAGTCAATTG-GGCTTT- i canFam3.chr26 I 2 C 0 s dasNov3.JH568189 886868 867 - 1116856 CAATGAGGGTCACGGTCAGTAGGCTGGGTATGGACGGGGCCCG---------------------------CCGCCTGCCCTCCTTGGCTCTGTGGGCTCCACCTCTGGGTGCAGA--GCCGTACGGCCTCCAGACTAAAGCAGGAAGGAAAACAGATGGGGGCTGGAGGGCAGAGGCCTGCCAGCATGGGGGCTGCGTTCACAACTGCTACAGTGAGGCCCAGAGCCCAGGCCACGCAGGCTCC-CTTACTGACTGCTCACCACAGGCAGGGGCCCAGTGCACCCAGCTCCCACCCTTCTTGGGGCCAGTTCGTGAGTCCCCAGCACCTGGAGCCAGGCCCGGCACACTAATGCGTTATGAGCAC-------TACAAattcacttcaccttactggtgagaaaatgagttcagagaggttaattcatgaacctgggg---------ccacacagtaagtg-----tgaaccatggaataaaatccagaactccctgattctaaattctaggcttatcatatgccaccaaactTCAACATACAG------GACCAAAATTACT----CTTGAAAGGTCATCCTGGCTG-------------------CTTCCTCACAGGAAAGCCTAGTGCCTGGGAAA-GGGGTGAACATTCCCTCTAAATGGTATCTGGAGCTGGGCAAAGCAAGAAGTAGGAGGAAGAGAGATGTTGAACTCCAGAGGGAAGCCCCAGGACTTTCAGAGAGCTGACAGGAG-CCCCAAATCCTTCTTGTGAACTTCCCAAGAACGTATCTTGCAGGGCCATGTGGCAGTTTCAGGAGACT-GGAGTCTCTCCCCTAAATACCTGCTCCTCCCCTCCCC----CGTGGCTACAGTTATCGGAGGCTCGCTAAGGGCCCCACATTCTCTGCCTTTACAGGAACCCTGGAAATGTGGTGAAGTCAA-CC-GGTCTTT i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6762887 780 - 9870158 I a score=1522027.000000 s hg38.chr12_KI270834v1_alt 117857 111 + 119498 CTGGAAAAGCTACCAGAGTAATTCAAGACGC-TTGTACAGCACTGAAAAAT-ACTGAGGATGAAATGTGAGTTATTTGCTTATAAATTATTATTGTAAATACAGAACCTCAGA s panTro5.chr12 127403450 111 + 137163284 CTGGAAAAGCTACCAGAGTAATTCAAGACGC-TTGTACAGCACTGAAAAAT-ACTGAGGATGAAATGTGAGTTATTTGCTTATAAATTATTATTGTAAATACAGAACCTCAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125753753 111 + 135337776 CTGGAAAAGCTACCAGAGTAATTCAAGACGC-TTGTACAGCACTGAAAAAT-ACTGAGGATGAAATGTGAGTTATTTGCTTATAAATTATTATTGTAAATACAGAAACTCAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8267329 111 - 8369578 CTGGAAAAGCTACCAGAGTAATTCAAGACGC-TTGTACAGCACTGAAAAAT-ACTGAGGATGAAATGTGAGTTATTTGCTTATAAATTATTATTGTAAATACAGAACCTCAGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97925367 111 + 106955855 CTGGAAAAGCTACCAGAGTAATTCAAGACGC-TTGTACAGCACTGAAAAAT-ACTGAGGATGAAATGTGAGTTATTTGCTTATAAATTATTATCGTAAATACAGAGCCTCAGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124040415 111 + 133663169 CTGGAAAAGCTACCAGAGTAATTCAAGACGC-TTGTACAGCACTGAAAAAT-ACTGAGGATGAAATGTGGGTTATTTGCTTATAAATTATTATTGTAAACACAGAGCCTCAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128288606 111 + 137757926 CTGGAAAAGCTACCAGAGTAATTCAAGACGC-TTGTACAGCACTGAAAAAT-ACTGAGGATGAAATGTGGGTTATTTGCTTATAAATTATTATTGTAAACACAGAGCCTCAGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10687097 111 - 16319837 CTGGAAAAGCTACCAGAGTAATTCAAGACGC-TTGTACAGCACTGAAAAAT-ACTGAGGATGAAATGTGGGTTATTTGCTTATAAATTATTATTGTAAACACAGAGCCTCAGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12310991 111 + 20526591 CTGGAAAAGCTACCAGAGTAATTCAAGACGC-TTGTACAGCACTGAAAAAT-ACTGAGGATGAAATGTGGGTTATTTGCTTATAAATTATTATTGTAAACACAGAGCCTCAGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119282764 111 + 128539186 CTGGAAAAGCTACCAGAGTAATTCAAGACGC-TTGTACAGCACTGAAAAAT-ACTGAGGATGAAATGTGGGTTATTTGCTTATAAATTATTATTGTAAACACAGAGCCTTAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 633931 111 + 6255621 CTGGAAAAGCTACCAGAGTAATTCAAGACGC-TTGTACAGCACTGAAAAAT-ACTGAGGATGAAATGTGGGTTATTTGCTTATAAATTATTATTGTAAACACAGAGCCTCAGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4660427 111 - 8658521 CTGGAAAAGCTACCAGAGTAATTCAAGATGC-TTGTACAGCACTGAAAAAT-ACTGAGGATGAAATGTGGGTTATTTGCTTATAAATTATTATTGTGAACACAGAGCCTCAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114866331 110 + 124281992 CTGGAAGAGCTATCAGAGTAATTCAAGACGC-CGGTACAGCACTGACAAAT-ACCAAGGCC-AAATGTGGGTTATCTGCTTATAAATTATTACTGTCGATACAGAGCCTCATA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 505573 111 - 9212255 CTGGAAAAGCTATCAGAGTAATTCAAGACGC-TTGTACAGCACTGACAAAT-ACCAAGGCTAAAATGTGGGTTATCTGCTTATAAATTATTATTGTCAATACAGAGCCTCATA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2924569 111 + 4466143 CTGGAAAAGCTACCAGAGTAATTCACGACGC-GTGTACAGCACTGACAAAT-ACCAGGGCTAAAATGTGGGCTATCTGCTTATAAATTATTATTGTCACTACAGAGCCTCACA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1627522 111 + 5364348 CTGGAAAAGCTACCAGAGTAATTCAAGACGC-TTGTACAGCACCGACAAAT-ACCAAAGCCAAAATGGGGGTTACCTGCTTATAAATTATTATTGTCAATACAGAGCCTCATA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6763667 112 - 9870158 CTGGAAAAGCTACCCGAGTAATTCAAGATGCCTTGCACAGCGCCGAAAAAT-ACCAAGGATGAAATGTGCACTATCTGTTTACAAATTATTCTTGTCAATCCAAAGCCTCAGA i proCoq1.NW_012154285v1 I 780 I 85 s otoGar3.GL873618 4348007 110 + 7922563 CTAGAAAAGCTACCAGAGTAATTCAAGA--CTTTGCA-AGTGCTGAAAAATAACCAAGGACAAACTGTGGATTATTTGCTTATAAATTATTCTTGTAAATACAGAGCCTCAGA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33195648 109 - 38964690 CTGGAAAAGCAACTAAAGAAATTCAAGACGCCTTGCACAGCACTGAAAAAT-GCAAAAGACTAAATGTGAATTATTTGCTT---AATTATTCTTGCAAATGCAGAACCTTAGA i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 887735 94 - 1116856 CCGGAAAAGCTACTAGAGAAATTCAAGATGC-CT----TGCACTGGAAAAG-GCAAAAGACAAAATAGGAATTATTTGCTTATAAA-------------AACAGAATTTCAGA i dasNov3.JH568189 C 0 C 0 a score=1227863.000000 s hg38.chr12_KI270834v1_alt 117968 107 + 119498 ATGCATTTTCCC-TAATTTGCTATTCCAGAGAACCCTCCGTAAAGGAGGTACAACTTCTC-AATGGCTCCCAGGACGCAGCCCATTTGTAGGATGCCACAGTGGAACCG s panTro5.chr12 127403561 107 + 137163284 ATGCATTTTCCC-TAGTTTGCTATTCCAGAGAACCCTCCGTAAAGGAGGTACAACTTCTC-AATGGCTCCCAGGACGCAGCCCATTTGTAGGATGCCACAGTGGAACCG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125753864 107 + 135337776 ATGCATTTTCCC-TAGTTTGCTATTCCAGAGAACCCTCCGTAAAGGAGGTACAACTTCTC-AATGGCTCCCAGGACGCAGCCCATTTGTAGGATGCCACAGTGGAACCG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8267440 107 - 8369578 ATGCATTTTCCC-TAATTTGCTATTCCAGAGAACCCTCCGTAAAGGAGGTACAACTTCTC-AATGGCTCCCAGGACGCAGCCCATTTGTAGGATGGCACAGTGGAACCG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97925478 107 + 106955855 ATGCATTTTCCC-TAATTTGCTATTCCAGAGAACCCTCCGTAAAGGAGGTACAACTTCTC-AACAGCTCCCGGGATGCAGCCCATTTGTAGGATGCCACAGTGGAACCG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124040526 107 + 133663169 ATGCATTTTTCC-TAATTTGCTATTCCAGAGAACCCTCCGTAAAGGAGGTACAACTTCTC-AATGGCTCCTGGGACACAGCCCATTTGTAGGATGCCACAATGGGACCG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128288717 107 + 137757926 ATGCATTTTTCC-TAATTTGCTATTCCAGAGAACCCTCCGTAAAGGAGGTACAACTTCTC-AATGGCTCCTGGGACACAGCCCATTTGTAGGATGCCACAATGGGACCG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10687208 102 - 16319837 ATGCATTTTTCC-TAATTTGCTATTCCAGAGAACCCTCCGTAAAGGAGGTACAACTTCTC------CTCCTGGGACACAGCCCATTTGTAGGATGCCACAATGGGACCG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12311102 107 + 20526591 ATGCATTTTTCC-TAATTTGCTATTCCAGAGAACCCTCCGTAAAGGAGGTACAACTTCTC-AATGGCTCCTGGGACACAGCCCATTTGTAGGATGCCACAATGGGACCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119282875 107 + 128539186 ATGCATTTTTCC-TAATTTGCTATTCCAGAGAATCCTCCGTAAAGGAGGTACAACTTCTC-AATGGCTCCTGGGACACAGCCCATTTGTAGGATGCCACAATGGGACCG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 634042 107 + 6255621 ATGCATTTTTCC-TAATTTGCTATTCCAGAGAACCCTCCGTAAAGGAGGTACAACTTCTC-AATGGCTCCTGGGACACAGCCCATTTGTAGGATGCCACAATGGGACCG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4660538 107 - 8658521 ATGCATTTTTCC-TAATTTTCTACTCCAGAGAACCCTCCGTAAAGGAGGTACAACTTCTC-AATGGCTGCTGGGACACAGCCCCTTTGTAGGATACCACGATGGGACCG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114866441 107 + 124281992 AAGCATTTTCCC-CAATTCGCTATTCCAGAGAGCCCTCCATAAAGGAGATACAACTCCTC-AACAGCTTCCAGGACTCAGCCCATTTGTAGGATGCCACGATGGGACGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 505684 107 - 9212255 AAGCATTTTCCC-TAATTTGCTATTCCAGAGAACCCTCCATAAAGGAGATACAACTTCTC-AACAACTTTCAGGACTCAGCCCATTTGTAGGATGCCACGATAGGACGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2924680 107 + 4466143 AAGCATTCTCCC-TGATTTGCTATTCCTGAGAACCCTCCATAAAGGATATATAACTTCTC-AACAGCTTCCAGGACTCAGCCCATTTGTAGGATGCCACAATGGGACGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1627633 107 + 5364348 AAGCATTTTCCC-TAATTTGCTATTCCAGAGAACCCACCATAAAGGAGATACAACTTCTC-AACAGCTTCCAGGACTCAGCCCATTTGTAGGATGCCACGATGGGACGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4348117 107 + 7922563 GTATAGCGTCTT-TAATTTGCTATACCAGAGAACCCACCCTAAAGGAAACACGACTTCTC-AAAGACTTCCAGTACACAGCATATTTGTAGGATGGCATGATGGGATGA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33195757 82 - 38964690 GGCCATTTTTCC-TCATTTGCTATGCCAAAGAGCCCTCC-CAGAGGAGACACCACTTCTCAAACGGCTTCCAG-----------TCTGT--------------GAACGG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 887829 108 - 1116856 GTCTATGTCCCCTTAATTTTCCATGCCAAAGAACCCTCCCTAAAGGAAATACCACCTCTCAAAAGGTTTCTAGAATGCAGTACAT-TGCAGGATTACGCAACAAGCTGA i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6763779 85 - 9870158 I a score=448764.000000 s hg38.chr12_KI270834v1_alt 118075 32 + 119498 TTTTGGAGACACTGACACACCCAGGCTGTCAC s panTro5.chr12 127403668 32 + 137163284 TTTTGGAGACACTGACACACCCAGGCTGTCAC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125753971 32 + 135337776 TTTTGGAGACACTGACACACCCAGGCTGTCAC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8267547 32 - 8369578 TTTTGGAGACACTGACACACCCAGGCTGTCAC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97925585 32 + 106955855 TTTTGGAGACAATGACACACCCAGGCTGTCAC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124040633 32 + 133663169 TTTTGGAGACCCTAACACACCCAGGCTGTCAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128288824 32 + 137757926 TTTTGGAGACCCTGACACACCCAGGCTGTCAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10687310 32 - 16319837 TTTTGGAGACCCTGACACACCCAGGCTGTCAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12311209 32 + 20526591 TTTTGGAGACCCTGACACACCCAGGCTGTCAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119282982 32 + 128539186 TTTTGGAGACCCTGACACACCCAGGCTGTCAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 634149 32 + 6255621 TTTTGGAGACCCTGACACACCCAGGCTGTCAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4660645 32 - 8658521 TTTTGGAGATCCTGACACACCCAGGCTGTCAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114866548 32 + 124281992 TTTTGGAGACACGGACACACCCAGGCTGTCAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 505791 32 - 9212255 TTTTGGAGACATTGACACACCCAGGCTGTCAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2924787 32 + 4466143 TTTTGGAGACACTGACACACCCAGGCTGTCAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1627740 32 + 5364348 TTTTGGAGACACTGACACACCCAGGCTGTCAC i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6763864 32 - 9870158 TTTTGGAGACAGTGACACACCCAGGCTGTCAC i proCoq1.NW_012154285v1 I 85 I 886 s otoGar3.GL873618 4348224 32 + 7922563 TTTTGGAGACCGTGACGCATCCAGGCTGTCAA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33195839 15 - 38964690 ---------CTCTGGTA--------CTATCAC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 887937 32 - 1116856 TTCTGGAGATGGCAACACGCCCATGTTGTCTC i dasNov3.JH568189 C 0 C 0 a score=3237339.000000 s hg38.chr12_KI270834v1_alt 118107 319 + 119498 TGCTTCAGACGACACCAATTGCTCATCAATTATCTGTACGACCAGTGACATGCATGCACACTAGCTCTGGAGCTAGGACGAGTTCATAAC--G--AACTTCAGACATACACTTTCA-TC-ACAC-GAAAACACTTCCTGGGCGCTGCTCCGGTGGA-AAGCCACAGA-----CTCCACTCCGAGGGCAACCTG-AGAACGCAGAGAAGGAAATAAAACA----CGACGGAGCTCACGAAGGGGAATGA-----ACAATGATACATCCTAAAAAGGACCAAGAAAAAGAGAA-ACAAGAGGCCCTTTCAGTTGGGGACAAAAACTGGCAGGAGAGG-GCAGTGGC s panTro5.chr12 127403700 319 + 137163284 TGCTTCAGACGACACCAATTGCTCATCAATTATCTGTACGACCAGTGACATGCATGCACACTAGCTCTGGAGCTAGGATGAGTTCATAAC--G--AACTTCAGACATACACTTTCA-TC-ACAC-GAAAACACTTCCTGGGCGCTGCTCCGGTGGA-AAGCCACAGA-----CTCCACTCCAAGGGCAACCTG-AGAACGCAGAGAAGGAAATAAAACA----CGACGGAGCTCACGAAGGGGAGTGA-----ACAATGATACATCCTAAAAAGGACCAGGAAAAAGAGAA-ACAAGAGGCCCTTTCAGTTGGGGACAAAAACTGGCAGGAGAGG-ACAGTGGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125754003 319 + 135337776 TGCTTCAGACGACACCAATTGCTCATCAATTATCTGTACGACCAGTGACATGCATGCACACTAGCTCTGGAGCTAGGACGAGTTCATAAC--G--AACTTCAGACATACACTTTCA-TC-ACAC-GAAAACACTTCCTGGGCGCTGCTCCGGTGGA-AAGCCACAGA-----CTCCACTCCAAGGGCAACCTG-AGAACGCAGAGAAGGAAATAAAACA----CGACGGAGCTCACGAAGGGGAGTGA-----ACAATGATACATCCTAAAAAGGACCAGGAAAAAGAGAA-ACAAGAGGCCCTTTCAGTTGGGGACAAAAACTGGCAGGAGAGG-GCAGTGGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8267579 319 - 8369578 TGCTTCAGACGACACCAATTGCTCATCAATTATCTGTACAACCAGTGACATGCATGCACACTGGCTCTGGAGCTAGGACGAGTTCATAAC--G--AACTTCAGACATACACTCTCA-TC-ACAC-GAAAACACTTCCTGGGCGCTGCTCAGGTGGA-AAGCCACAGA-----CTCCACTCCAAGGGCAACCTG-AGAACGCAGAGAAGGAAATAAAACA----CGACGGAGCTCACGAAGGGGAGTGA-----ACAATGATACATCCTAAAAAGGATCAAGAAAAAGAGAA-ACAAGAGGCCCTTTCAGTTGGGGACAAAAACTGGCAGGAGAGG-GCAGTGGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97925617 319 + 106955855 TGCTTCAGACGACACCAATTGCTTATCAATTATCTGTACAACCAGTGACATGCATGCACACTAGCTCCGGAGCTAGGACGAGTTCATAAC--G--AACTTCAGACATACACTTTCA-TC-ACAC-GAAAACACTTCCCGGGCGCTGATCAGGTGGA-AAGCCACAGA-----CTCCACTCCAAGGGCAACCTG-AGAACGCAGAGAAGGAAATAAAACA----CGACGGAGCTCACGAAGGGGAGTGA-----ACAATGACACATCCTAAAAAGGACCAAGAAAAAGAGAA-ACAAGAGGCCCTTTCAGTTGGGGACAAAAACTGGCAGGAGAGG-GCAGTGGC i nomLeu3.chr10 C 0 I 109 s rheMac8.chr11 124040665 319 + 133663169 TGCTTCAGACGACACCAATTGCTTGTCAATGATCTGTACGACCAGTGATGTGCATGCACACTAGCTCTGGAGCTAGGACGAGTTCATAAC--G--AACTTCAGACATACACTTTCA-TC-ACAC-GAAGACCCTTCCCAGGTGCTGCTCAGGGGGA-AAGCCACAGA-----CTCCACTCCAAGGGCCACCTG-AGAACGCAGAGAAGGAAATAAAACA----CGACGGAGCTCACTAAGGGGAATGA-----ACGATGACACATCCTAAAAAGGACCAAGAAAAAGAGAA-ACAAGAGGCCCTTTCAGTTGGCGACAAAAACTGGCAGGAGAGG-GCCGTGGC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128288856 319 + 137757926 TGCTTCAGACGACACCAATTGCTTGTCAATGATCTGTACGACCAGTGATGTGCATGCACACTAGCTCTGGAGCTAGGACGAGTTCATAAC--G--AACTTCAGACATACACTTTCA-TC-ACAC-GAAGACCCTTCCCAGGTGCTGCTCAGGGGGA-AAGCCACAGA-----CTCCACTCCAAGGGCCACCTG-AGAACGCAGAGAAGGAAATAAAACA----CGACGGAGCTCACTAAGGGGAATGA-----ACGATGACACATCCTAAAAAGGACCAAGAAAAAGAGAA-ACAAGAGGCCCTTTCAGTTGGCGACAAAAACTGGCAGGAGAGG-GCCGTGGC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10687342 319 - 16319837 TGCTTCAGACGACACCAATTGCTTGTCAATGATCTGTACGACCAGTGATGTGCATGCACACTAGCTCTGGAGCTAGGACGAGTTCATAAC--G--AACTTCAGACATACACTTGCA-TC-ACAC-GAAGACCCTTCCCAGGTGCTGCTCAGGGGGA-AAGCCACAGA-----CTCCACTCCAAGGGCCACCTG-AGAACGCAGAGAAGGAAATAAAACA----CGACGGAGCTCACTAAGGGGAATGA-----ACGATGACACATCCTAAAAAGGACCAAGAAAAAGAGAA-ACAAGAGGCCCTTTCAGTTGGCGACAAAAACTGGCAGGAGAGG-GCCGTGGC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12311241 319 + 20526591 TGCTTCAGACGACACCAATTGCTTGTCAATGATCTGTACGACCAGTGATGTGCATGCACACTAGCTCTGGAGCTAGGACGAGTTCATAAC--G--AACTTCAGACATACGCTTTCA-TC-ACAC-GAAGACACTTCCCAGGCGCTGCTCAGGGGGA-AAGCCACAGG-----CTCCACTCCAAGGGCCACCTG-AGAACGCAGAGAAGGAAATAAAACA----CGACGGAGCTCACTAAGGGGAATGA-----ACGATGACACATCCTAAAAAGGACCAAGAAAAAGAGAA-ACAAGAGGCCCTTTCAGTTGGCGACAAAAACTGGCAGGAGAGG-GCCGTGGC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119283014 319 + 128539186 TGCTTCAGACGACACCAATTGCTTATCAATGATCTGTACGACCAGTGATGTGCATGCACACTAGCTCTGGAGCTAGCACGAGTTCATAAC--G--AACTTCAGACATACACTTTCA-TC-ACAC-GAAGACACTGCCCAGGCGCTGCTCAGGGGGA-AAGCCACAGA-----CTCCACTCCAAGGGCAACCTG-AGAACGCAGAGAAGGAAATAAAACA----CGACGGAGCTCACTAAGGGGAATGA-----ACGATGACACATCCTAAAAAGGACCAAGAAAAAGAGAA-ACAAGAGGCCCTTTCAGTTGGTGACAAAAACTGGCAGGAGAGG-GCCGTGGC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 634181 318 + 6255621 TGCTTCAGACGACACCAATTGCTTGTCAATGATCTGTACGACCAGTGATGTGCATGCACACTAGCTCTGGAGCGAGGACGAGTTCATAAC--G--AACTTCAGACATTCACTTTCA-TC-ACAC-GAAGACACTTCCCAGGCGCTGCTC-TGGGGA-AAGCCACAGA-----CTCCACTCCAAGGGCCACCTG-AGAACGCAGAGAAGGAAATAAAACA----CGACGGAGCTCACTAAGGGGAATGA-----ACGATGACACATCCTAAAAAGGACCAAGAAAAAGAGAA-ACAAGAGGCCCTTTCAGTTGGCGACAAAAACTGGCAGGAGAGG-GCCGTGGC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4660677 323 - 8658521 TGCTTCAGACG-TGTCAATTGCTTGTCAATTATCTGTACGACCAGTGATGTGCATGCACACTAGCTCTGGAGCTAGGACGAGTTCATAAC--G--AACCTCAGACATACACTTTCA-TC-ACAC-GAAGACACTTTCCAGGCGCTGCTCAGGGGGA-AAGCCACAGACTCCCCTCCCCTCCAAGGGCAACCTG-AGAACGCAGAGAAGGAAATAAAACA----CGACGGAGCTCACTAAGGGGAATGA-----ACGATGACACATCCTAAAAAGGACCAAGAAAAAGAGAA-ACAAGAGGCCCTTTCAGTTGGTGACAAAAACTGGCAGGAGAGT-GCCGTGGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114866580 306 + 124281992 TGCTTCAGACAACACCAATTGCTCATCAATTCTCTATATGA-TGGTGACATGCATGCACACTAGCTCTGGGGCTAGGACGAGTTCATAGA--G--AACTTCAGACATACACTTTCA-TC-ACAC-GAAAACATTTCCCACGTGCTGCTCAGGTGGA-AAGCCAAAGC-------------CAAGGGCAACCTG-AGAATGCAGAGAAGGAAATAAAACA----TGA--GAGCTCACGAAGGGGAGCGA-----ATGAGGACACATCCTAAACTGGTCCAGGAAAAGGAGGA-ACAAGAGGCCCTTTCAGTTAGGTACAGAAACTGACGGGAGA---ACGGTGAC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 505823 306 - 9212255 TGCTTCAGACGACACCAATCACTCATCAATTATCTGTATGA-CAGTGACAGGCATGCACACTAGCTCTGGGGCTAGGACGAGTTCATAGC--G--AACTTCAGACATACACTTTCA-TC-ATGC-GAAAACATTTCCCACGTACTGCTCAGATGGA-AAGCCAAAGC-------------CAAGGGCAACCTG-AGGATGCAGAGAAGGAAATAAAACG----TGA--GAGCTCACGAAGGGGAGCAA-----ACGACGACACATCCTAAACTGGTCCGGGAAAAGGAGGA-ACAAGAGGCCCTTTCACTTAGGTACAGAAACTGATGGGAGA---CCGGTGAC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2924819 306 + 4466143 TGCTTCAGAGAACACCAATCGCTCATCAATTATCTACATGA-CAGTGACGTGCATGCACACTAGCTCTGGGGCTAGGATGAGCTCATGGC--G--AACTTCAGACATACACTTTCA-TC-ACGC-GAACACATTTCCCACATGCTGCTCAGGTGGA-AAGCCAAAGC-------------CAAGGGCAACCTG-AGAATGCAGAGAAGGAAATAAAACA----TGA--GAGCTCACGAAGGGGAGCGA-----ACGATGACACATCCTAAACTGGTCTGGGAAAAGAAGGA-ACAAGAGGCCCCTTCAGTTAGGTACAGAAACTGACAGGAGA---ACGGTGAC i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1627772 306 + 5364348 TGCTTCAGACAACACCAATCGCTCATCAATTATCTATATGA-CAGTGACATGCATGCACACTAGCTCTGGGGCTAGGACGAGTTCATAGC--G--AACTTCAGACGTATACTTTCA-TC-ACGT-GAAAACATTTCCCACGTGCTGCTCAGGTGGA-AAGCCAAAGC-------------CAAGGGCAACCTG-AGAATGCAGAGAAGGAAATAAAACA----TGA--GAGCTCACGAAGGGGAGCGA-----ACGATGATACATCCTAAACTGGTCCGGGAAAAGGAGGA-ACAAGAGGCCCTTTCAGTTAGGTACAGAAACTGACGGGAGA---ACGGTGAC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4348256 306 + 7922563 CATTTCGGGCAATACTGATCACTCCTCAA-AATTTGTAAGACCAGTGATGTGTTTACACACTAGCTCTGGAGCTAGAAATGCTTCCTAAC--TGCAACTTAAGACA--CACTTTCA-TTGACAC-AAAG--------CATGGTCTACTCAGCAG---AGGCTACAGA-----TGCCA---TAAAGGCAACCTGAAAAATGCAGAGAAGAAAATAAAATGACACCAACAGAGTATAGGAAGAGAAGTGA-----CTAATGTCACATCCTAAAAAGGACCAGGATAA----AA-ACAATAGGATGTTTCACTTGGGGGCAGAAA-TGACAAGAGAAA-GCAGTGAC i otoGar3.GL873618 C 0 I 1 s canFam3.chr26 33195854 265 - 38964690 CACATTGGGTGACACCCATCACTGG-----GATTTGCA-----AGTGACATATTTACACCCCAGCTACGGAGCTAAGAAAAGTTCATAACTGG--AACTCAAGATATGTGTCTTCACTC-ACAG-GGAGAAGCTTCCTGATATGTCCTTGG--------GCCCCAGG-----CTTTGCTCCAAAGGAAAGTTA----------AGGAGGAAATAGAGTG----TGGCAG-GCAAGCCAGAAGGAGGGA-----GAG-----------TACAGGGAAC--AGGTACAGAGGA-ACAAAAGGACATT-----------------CTGGGGGGAGGGACGCAgtgg- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 887969 276 - 1116856 CACTGCAGACGGCACCAGTCGTTTGTT-ATTATGTCCAAGACCAG-----------------------------------------CAAC--A--AGTTT-------ACACACTCA-TT-ACACTGGAAAAGCTTTGTGTGAGCTCCTCAGGTGAAGGGGCCCCAGG-----CTTTACTCCCAAAGACAGTTC-AAAATGCAGAGAAGGAAATAAGGTC----AGATGAAGCTGATGATGGGAGTGGACCATGACAATGACACCCCCGACAAAGGCACAGGATAGAGAAAACAAAAAGGGACATTTCAGTGAGGGGGAAAA--TGGCAAGAGAAA-GCAGTGAC i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6763896 886 - 9870158 I a score=1960079.000000 s hg38.chr12_KI270834v1_alt 118426 203 + 119498 -------CCCAGGACACGGC----------A-AGTACAGTCTC-------------GGGGGGCA-------------CCTCACCACGGGCAGTGATTGGGCAGAGCTGatcagaagccttggaattggtcatctctctgaactagcaa-ttt-atttttagaaatctaccaaagggaaattattacttttgtgtgaaaagaggtagctgtgagaatgg---tcactacagtgcagtttgcagttggaaaaga s panTro5.chr12 127404019 203 + 137163284 -------CCCAGGACACGGC----------A-AGTACAGTCTC-------------GGGGGGCA-------------CCTCACCACGGGCAGTGATTGGGCAGAGCTGatcagaagccttggaattggtcatctctctgaactagcga-ttt-atttttagaaatctaccaaagggaaattattacttttgtgtgaaaagaggtagctgtgagaatgg---tcactacagtgcagtttgcagttggaaaaga i panTro5.chr12 C 0 C 0 s panPan2.chr12 125754322 203 + 135337776 -------CCCAGGACACGGC----------A-AGTACAGTCTC-------------GGGGGGCA-------------CCTCACCACGGGCAGTGATTGGGCAGAGCTGatcagaagccttggaattggtcatctctctgaactagcaa-ttt-atttttagaaatctaccaaagggaaattattacttttgtgtgaaaagaggtagctctgagaatgg---tcactacagtgcagtttgcagttggaaaaga i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8267898 201 - 8369578 -------CCCAGGACACGGC----------A-AGT--AGTCTT-------------GGGGGGCA-------------TCTCACCACGGGCAGTGATTGGGCAGAGCTGatcagaagccttggaattggtcatctctctgaactagcaa-ttt-atttttagaaatctatcaaagggaaattattacttttgtgtgaaaagaggtagctgtgagaatgg---tcactacagtgcagtttgcagttggaaaaga i gorGor5.CYUI01015152v1 C 0 C 0 s rheMac8.chr11 124040984 200 + 133663169 -------CCCAGAACACGGT----------G-AGT--AGTCTC--------------GGGGGCA-------------CCTCGCCATGAGCAACGATTGGGCAGAGCTGatcagaagccttgaaattggtcatctctctgaactagcaa-ttt-atttttaggaacctgccaaaggaaaactattacttttgtgtgaaaagaggtagctgtgagaatgg---tcactatagtgcagtttgcagttggaaaaga i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128289175 200 + 137757926 -------CCCAGAACACGGT----------G-AGT--AGTCTT--------------GGGGGCA-------------CCTCGCCATGAGCAACGATTGGGCAGAGCTGATCAGAAGCCTTGAAATTGGTCATctctctgaactagcaa-ttt-atttttaggaacctgccaaaggaaaactattacttttgtgtgaaaagaggtagctgtgagaatgg---tcactatagtgcagtttgcagttggaaaaga i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10687661 200 - 16319837 -------CCCAGAACACGGT----------G-AGT--AGTCTC--------------GGGGGCA-------------CCTCGCCATGAGCAACGATTGGGCAGAGCTGatcagaagccttgaaattggtcatctctctgaactagcaa-ttt-atttttaggaacctgccaaaggaaaactattacttttgtgtgaaaagaggtagctgtgagaatgg---tcactatagtgcagtttgcagttggaaaaga i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12311560 200 + 20526591 -------CCCAGAACACGGT----------G-AGT--AGTCTC--------------GGGGGCA-------------CCTCGCCATGAGCAACGATTGGGCAGAGCTGatcagaagccttgaaattggtcatctctctgaactagcaa-ttt-atttttaggaacctgccaaaggaaaactattacttttgtgtgaaaagaggtagctgtgagaatgg---tcactatagtgcagtttgcagttggaaaaga i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119283333 199 + 128539186 -------CCCAGAACACGGT----------G-AGT--AGTCTC--------------GGGGGCA-------------CCTCGCCATGAGCAACGATTGGGCAGAGCTGATCAGAAGCCTTGAAATTGGTCATctctctgaactagcaa-ttt--tttttaggaacctgccaaaggaaaactattacttttgtgtgaaaagaggtagctgtgagaatgg---tcactacagtgcagtttgcagttggaaaaga i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 634499 200 + 6255621 -------CCCAGAACACGGT----------G-AGT--AGTCTC--------------GGGGGCA-------------CCTCGCCATGAGCAACGATTGGGCAGAGCTGatcagaagccttgaaattggtcatctctctgaactagcaa-ttt-atttttaggaacctgccaaaggaaaactattacttttgtgtgaaaagaggtagctgtgagaatgg---tcactatagtgcagtttgcagttggaaaaga i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4661000 203 - 8658521 -------CCCAGAACATGGC----------A-AGT--AGTCTC--------------GGGGGCA-------------CCTCGCCATGAGCAACGATTGGGCAGAGCTGATCAGAAGCCTTGAAATTGGTCACCTCTCTGAACTAGCAA-TTT-ATTTTTAGGAACCTGCCAAAGGAAAATTATTACTTTTGTGTGAAAAGAGGTAGCTGTGAGAATGGTCATCACTATAGTGCAGTTTGCGGTTGGAAAAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114866886 202 + 124281992 -------CCCAGGACACGGC----------G-AGTGCAGGCTCGG-----------GAGGGGCA-------------CC---TTGtgggcagcaactgggccaagctgatcagaagccttggaattggtcatgtctctgaaccagcaa-ttt-gactttagtaatctaccaaagggaagttacgactttcgtgtgaaaagaggtagctgtgagaatgg---tcattaaagtacagtttgcagttggaaaagt i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 506129 203 - 9212255 -------CCCAGGACACGGC----------G-AGTGCAGGCTCGG-----------GAGGGGCa-------------ccttgttgtgggcagcaactgggccaagctgattagaagccttggaattggtcatctctctgaaccagcaa-ttt-gtttttagtaatctaccaaggggaagttacgacttttgtgtg--aagaggtagctgtgagaatag---tcattaaagtgcagtttgcagttggaaaaga i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2925125 194 + 4466143 -------CCCAGGACACGGC----------G-AGTGCA----------------------GGCa-------------ccttgttgtgggcagcaactgggccaagctgatcagaagccttggaattggtcatctctctgaaccagcaa-ttt-gtttttagtaatctaccaaagggaagttatgactttcgtgtgaaaagaggtagttgtgagaatgg---tcattaaagtgcagtttgcagttggaaaaga i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1628078 205 + 5364348 -------CCCAGGACACGGC----------G-AGTGCAGGCTCGG-----------GAGGGGCA-------------CCTTGttgtgggcagcagctgggccaagctgatcagaagccttggaattggtcatctctctgaaccagcaa-ttt-gtttttagtaatctaccaaagggaagttatgactttcatgtgaaaagaggcagctgtgagaatgg---tcattaaagtgcagtttgcagttggaaaaga i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4348563 210 + 7922563 -------ACCAGGGAAC---------------AGTTCAGGTTtggtgggactgtgaatggtgcc-------------cctcaccttaggcagcaattcagcaaagcctatcagaagcctcagaatcgatcatctctctgaattagcaagttt-acttctaggaatctgtcaaagggaaattagtact---gtgtgaaaagaggtagctgtgagaatga---tcattacggtacaccttgtagtcagaaaagc i otoGar3.GL873618 I 1 C 0 s canFam3.chr26 33196119 216 - 38964690 ---------ggggacacagc----------acagcacagcatc-------------tggtggcagtgttagccacttccccttggctgggggcaatttggcaaagtctgtctagagcctgggagtatattatccctatgactttgcaa-tttcatttctaggaatcgaccaaaggacaagatttacttttgtgtgaaaagagacagccatgacaatgg---ccattacagcgcagttcacagtcagaaaaga i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 888245 215 - 1116856 TACAGGAAACAAAGCACAGCTCTtggtcggg-agt--gatcac--------------tggtata-------------cgttattataggtagcaatatggcaaagtgtatcagaggccttacaatttggcatccctctga--tagcaa-tttcatttctaggactctaccaaaaggaaatagttacctttgtgtgaaaagatacattggtaag-gtgg---ccattacagtgcagtttacagttggaaaggg i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6763896 886 - 9870158 I e nomLeu3.chr10 97925936 109 + 106955855 I a score=629910.000000 s hg38.chr12_KI270834v1_alt 118629 63 + 119498 ctagaaacaaactcaaaacccgacaatagggagtgggttaaataacttaaggCGACCATTTCT s panTro5.chr12 127404222 63 + 137163284 ctagaaacaaactcaaaacccgacaatagggagtgggttaaataacttaaggCGACCATTTCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125754525 63 + 135337776 ctagaaacaaactcaaaacccgacaatagggagtgggttaaataacttaaggCGACCATTTCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8268099 63 - 8369578 ctagaaacaaactcgaaacccgacaatagggagtgggttaaataacttagggCGACCATTTCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97926045 63 + 106955855 CTAGAAACAAACTCAAAACCCGACAACAGGGAGTGGGTTAAATAACTTAAGGCGACCATTTCT i nomLeu3.chr10 I 109 C 0 s rheMac8.chr11 124041184 62 + 133663169 ctagaaacaaactcaaaa-ccgacaacagggagtgggttaaaaaaCTGAAGGCGACCATTTCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128289375 62 + 137757926 ctagaaacaaactcaaaa-ccgacaacagggagtgggttaaaaaactGAAGGCGACCATTTCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10687861 62 - 16319837 ctagaaacaaactcaaaa-ccgacaacagggagtgggttaaaaaaCTGAAGGCGACCATTTCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12311760 62 + 20526591 ctagacacaaactcaaaa-ccgacaacacggagtgggttaaaaaaCTGAAGGCGACCATTTCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119283532 62 + 128539186 ctagaaacaaactcaaaa-ccgacaacagggagtgggttaaaaaactGAAGGCGACCATTTCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 634699 62 + 6255621 ctagaaacaaactcaaaa-ccgacaacagggagtgggttaaaaaaCTGAAGGCGACCATTTCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4661203 62 - 8658521 CTAGAAACAAACTCAAAA-CCGACAACAGGCAGTGGGTTAAAAAACTGAAGGCGACCATTTCT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114867088 60 + 124281992 ctagaaacaaactcagaa-cg--caacagggagggggttaaacaacttaaggCGACCATTTCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 506332 60 - 9212255 ctagaaacaaactcaaaa-cc--caacagggagtgggttaaataacttaaggAGACCATTTCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2925319 60 + 4466143 ctagaaacaaactcaaag-cc--caacagggagtgggttaaataactcaaggCGACCATTTCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1628283 60 + 5364348 ctagaaacaaactcaaaa-cc--caacagggagtgggttaaataacttaaggCGACCATTTCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4348773 61 + 7922563 ctggaaacaaactcaaatgccactaacaggAAGC-TGTGACATAACCCTGGGGGTCC-TCCCT i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33196335 52 - 38964690 ccggaatcagaat------ccaacaagagagaactggctaagtaaattatagCGATCG----- i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 888460 54 - 1116856 --caaaacaaactaaaac-tt--aaacagagaactgtttaaa----ttatggtTGTCATTTCT i dasNov3.JH568189 C 0 I 687 e proCoq1.NW_012154285v1 6763896 886 - 9870158 I a score=568177.000000 s hg38.chr12_KI270834v1_alt 118692 56 + 119498 AGGCATGTTTCTATAAAAC---AAAGCATAGCTCTCCCTGGCCTTTGACTGCCGTCGCA s panTro5.chr12 127404285 56 + 137163284 AGGCATGTTTCTATAAAAC---AAAGCATAGCTCTCCCTGGCCTTTGACTGCCGTCGCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125754588 56 + 135337776 AGGCATGTTTCTATAAAAC---AAAGCATAGCTCTCCCTGGCCTTTGACTGCCGTCGCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8268162 59 - 8369578 AGGCACGTTTCTATAAAACAAAAAAGCATAGCTCTCCCTGGCCTTTGACTGCCGTCGCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97926108 56 + 106955855 AGGCACGTTTCTATAAAAC---AAAGCATAGCTCTCCTTGGCCTTTGACTGCCGTTGCA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124041246 56 + 133663169 AGGCATGTTTCTATGAAAC---AAAGCATAGATCTCCCTGGCCTTTGACTCCCCTCGCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128289437 56 + 137757926 AGGCATGTTTCTATGAAAC---AAAGCATAGATCTCCCTGGCCTTTGACTCCCCTCGCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10687923 56 - 16319837 AGGCATGTTTCTATGAAAC---AAAGCATAGATCTCCCTGGCCTTTGACTCCCCTCGCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12311822 56 + 20526591 AGGCACGTTTCTATGAAAC---AAAGCATAGATCTCCCCGGCCTTTGACGCCCCTCGCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119283594 56 + 128539186 AGGCATGTTTCTATGAAAC---AAAGCATAGATCTCCCTGGCCTTTGACTCCCCTCGCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 634761 56 + 6255621 AGGCATGTTTCTATGAAAC---AAAGCATAGATCTCCCCGGCCTTTGACGCCCCTCGCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4661265 56 - 8658521 AGGCATGTTTCTATGAAAC---AAAGCATAGATCTCCCTGGCCTTTGACTCCCCTCGCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114867148 56 + 124281992 AGGCACATTTCTACAAAAC---AAAGCACAGAGCTCCCTGGCCTTTGACTCCCCTCGCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 506392 56 - 9212255 AGGCACATTTCTATAAAAC---AAAGCACAGAGCTCCCTGGCCTTTGACTCCCCTCGCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2925379 56 + 4466143 AGGCACATTTCTACAAAAC---AAAGCACAGAGCTCCCTGGCCTTTGACTCCCCTCTCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1628343 56 + 5364348 AGGCACATTTCTACAAAAC---AAAGCACAGAGCTCCCTGGCCTTTGACTCCCCTCGCG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4348834 38 + 7922563 AGGTCCGTTTCCTTGAAAC---AG-----------TCCTGGCCTGTGGTT-------CA i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33196387 48 - 38964690 --------TTCTAGGGAAC---AAAGATGAGATTTCCCAGGCCTTTAACTTGACTTCAA i canFam3.chr26 C 0 C 0 e proCoq1.NW_012154285v1 6763896 886 - 9870158 I e dasNov3.JH568189 888514 687 - 1116856 I a score=1760361.000000 s hg38.chr12_KI270834v1_alt 118748 178 + 119498 CTGGG--------CTGCAGATGATGGCAGAGTTGAGTTTCCATCAAGCAG------GGCTTTCCTCAGTGGAGCCGTGAGCAGCATTCCGGCAGGAGTGA------GAAAGGATG-TTTCTGTCCCCGAAACCGTCTCTGTGCTGTAACCGCAAACTCT-CC-TGTGTAGGCTG-CTGGGCCAGACACTAGTTTCTAAGTGG s panTro5.chr12 127404341 177 + 137163284 CTGGG--------CTGCAGATGATGGCAGAGTTGAGTTTCCATCAAGCAG------GGCTTTCCTCAGTGGAGCCGTGAGCAGCATTCTGGCA-GAGTAA------GAAAGGATG-TTTCTGTCCCCGAAACCGTCTCTGTGCTGTAACCGCAAACTCT-CC-TGTGTAGGCTG-CTGGGCCAGACACTAGTTTCTAAGTGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125754644 177 + 135337776 CTGGG--------CTGCAGATGATGGCAGAGTTGAGTTTCCATCAAGCAG------GGCTTTCCTCAGTGGAGCCGTGAGCAGCATTCCGGCA-GAGTGA------GAAAGGATG-TTTCTGTCCCCGAAACCGTCTCTGTGCTGTAACCGCAAACTCT-CC-TGTGTAGGCTG-CTGGGCCAGACACTAGTTTCTAAGTGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8268221 178 - 8369578 CTGGG--------CTGCAGATGATGGCAGAGTTGAGTTTCCATCAAGCAG------GGCTTTCCTCAGTGGAGCTGTGAGCAGCCTTCCGGCAGGAGTGA------GAAAGGATG-TTTCTGTCCCCGAAACCGTCTCTGTGCTGTAACCGCAAACTCT-CC-TGTGTAGGCTG-CTGGGCCAGACACTAGTTTCTAAGTGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97926164 178 + 106955855 CTGGG--------GTGCAGACGATGGCAGAGTTGAGTTTCCATCAAGCAG------GGCTTTTCTCAGTGGAGCTGTGAGCAGCCTTCTGGCAGGAGTGA------GAAAGGATG-TTTCTGTCCCCGAAACCGTCTCTGTGCTGTAACCGCAAACTCT-CC-TGTGTAGGCTG-CTGGGCCAGACACTAGTTTCTAAGGGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124041302 176 + 133663169 CTAGG--------GTGCAGACGATGGCAGAGCTGAGTTTCCATCAAGCAG------GGCTTTCCTCCGTGGAACAGTGGGCAGCCTTCCGGCAGGAGCGA------GAACGGGTGTTTTCTGTCCCCAAAACCGTCTC-GTGCTGTAACCGCAGA--CT-CC-TGTGTAGGCCG-CTGGGCCAGACACTAGTTTCTAAGTGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128289493 176 + 137757926 CTAGG--------GTGCAGACGATGGCAGAGCTGAGTTTCCATCAAGCAG------GGCTTTCCTCCGTGGAACTGTGGGCAGCCTTCCGGCAGGAGCGA------GAACGGGTGTTTTCTGTCCCCAAAACCGTCTC-GTGCTGTAACCGCAGA--CT-CC-TGTGTAGGCCG-CTGGGCCAGACACTAGTTTCTAAGTGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10687979 176 - 16319837 CTAGG--------GTGCAGACGATGGCAGAGCTGAGTTTCCATCAAGCGG------GGCTTTCCTCCGTGGAACTGTGGGCAGCCTTCCGGCAGGAGCGA------CAACGAGTGTTTTCTGTCCCCAAAACCGCCTC-GTGCTGTAACCGCAGA--CT-CC-TGTTTAGGCCG-CTGGGCCAGACACTAGTTTCTAAGTGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12311878 176 + 20526591 CTAGG--------GTGCAGACGATGGCAGAGTTGAGTTTCCATCAAGCAG------GGCTTTCCTCCGTGGAACTGTGGGCAGCCTTCCGGCAGGAGCGA------GAACGGGTGTTTTCTGTCCCCAAAACCGTCTC-ATGCTGTAACCGCAAA--CT-CC-TGTGTAGGCTG-TTGGGCCAGACACTAGTTTCTAAGTGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119283650 176 + 128539186 CTAGG--------GTGCAGATGATGGCAGAGCTGAGTTTCTATCAAGCAG------GGCTTTCCTCCGTGGAACTGTGAGCAGCCTTCTGGCAGGAGCAA------GAACGGATGTTTTCTGTCCCCAAAACTGTCTT-GTGCTGTAACCGCAAA--CT-CC-TGTGTAGGCTG-CTGGGCCAGACACTAGTTTCTAAGTGG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 634817 176 + 6255621 CTAGG--------GTGCAGACGATGGCAGAGATGAGTTTCCATCAAGCAG------GGCTTTCCTCCGTGGAACTGTGGGCAGTCTTCCGGCAGGAGCGA------GAACGGGTGTTTTCTGTCCCCAAACCCGTCTT-GTGCTGTAACCGCAAA--CT-CC-TGTGTAGGCCG-CTGGGCCAGACACTAGTTTCTAAGTGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4661321 175 - 8658521 CCAGG--------GTGCAGACGATGGCAGAGTTGAGTTTCCATCAAGCAG------GGCTTTCCTCCGTGGAACTGTGAGCAGCCTTCTGGCAGGAGCAA------GAACGGATG-TTTCTGTCCCCAAAACCGTCTC-GTGCTGTAACCGCAAA--CT-CC-TGTGTAGGCTG-CTGGGCCAGACACTAGTTTCTAAGTGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114867204 180 + 124281992 TCGGG--------GTGCAGATGACAGCAGAGTTGAGTTTCCACCAAGCA-------GGCTTTCCTCAGTGGAGCTGTGAGCAGCCTTCCAGCAGGAACAC---AAAAAAATGATG-TTTCTGTCCCCGAAACCGTCTCTTTGCCGTAACCGCAAACTCT-CC-TGTGTAGGCTG-CTGAGCCAGACATGAGTTTCTAAGTGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 506448 183 - 9212255 TCGGG--------GTGCAGATGATTGCAGAGTTGAGTTTCCACCAGGCA-------GGCTTTCCTCAGTGGAGCTGTGAGCAGCCTTCCAGCAGTAGCACACAAAAAAAATGACG-TTTCTGTCCCAGAAACCGTCTCTTTGCCGTAACCGCAAACTCT-CC-TGTGTAGGCTG-CTGAGCCAGACATGAGTTTCTAAGTGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2925435 180 + 4466143 TCGGG--------GTGCAGACGATAGTAGAGTTGAGTTTCCACCAAGCA-------GGCTTTCCTCAGTGGAGCTGTGAGCAGCCTTCCAACAGGAGCAC---AAAAAAATGATG-TTTCTGTCCCCGAAACCGTCTCTTTGCCTTAACCACAAACTCT-CC-TATGTAGGCTG-CTGAGCCACACACGAGTTTCTAAGTGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1628399 181 + 5364348 TCGGG--------GTGCAGATGATAGCAGAGTTGAGTTTCCACCAAGCA-------GGCTTTCCTCAGTGGAGCTGTGAGCAGTCTTCCAGCAGGAGCAC--AAAAAAAATGATG-TTTCTGTCCCCGAAACTGTCTCTCTGTTGTAACCGCAAACTCT-CC-TGTGTAGGCTG-CTGAGCCAGACACGAGTTTCTAAGTGG i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4348872 150 + 7922563 CCAGGCTTCCTTCCTGAAGATGATGCCAGAGCT--GTCTCCGTCACACAG------GGCTTTCCTCAGTGGAGGTGTGAGAAA------GGCAGGAAGGA------GAAAGAAAAGTTTCTG--CCTTAACTCATC----CGCTTCAACTACAGACTCTCCC-TGTACAGGCT-------------------------CTGG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33196435 158 - 38964690 GCTGG--------CTACGGCTGAGGCCAGGGTGGAGTTTCCATCAGACAG------AGTTTTTCCACTGGGAGCTGTGAACAGCCTTCCAG-------------------------TTTCCA-CCACGAAGGCATGTCTCTGCTGCAAGCACAAGGGTT-CC-TAGCCAGAAC--CTGGGCCAGGCAGGGACATCTACCTGG i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 889201 185 - 1116856 CCAGG--------TGGCAGATGATGCCAGAGTTGACTTTCCATTAAACTTTCCATCTGCTTTACTCAGCAGAGCTGTGAGTAGCCTTCTGGCAGGAGC-C------GTAAAGATG-CTTTTGTTCCTGAAATCACCTTTGTGCTGTAACGGCAAGCTTT-CCTTGCACGGGCCGCCTGGACCAGATGCGAACTCCTGCATGG i dasNov3.JH568189 I 687 I 648 e proCoq1.NW_012154285v1 6763896 886 - 9870158 I a score=1568060.000000 s hg38.chr12_KI270834v1_alt 118926 150 + 119498 AACCCCACAGTTCCCGAGATCCCAACACTGTCTGCACAGCACGTGGTCTTGGG---GGGC----GCTGACCTT-AACAAAGGAGCCAGCTACAACCAAGGCAGGTTCAGCGTGTGGCACACGTGTGCCGC-GTGCTTGCTGTGGAAAGGGTGAGCACCT s panTro5.chr12 127404518 150 + 137163284 AACCCCACAGTTCCCGAGATCCCAACACTGTCTGCACAGCACGTGGTCTTGGG---GGGC----GCTGACCTT-AACAAAGGAGCCAGCTACGACCAAGGCAGGTTCAGCGTGTGGCACACGTGTGCCGC-GTGCTTGCTGTGGAAAGGGTGAGCACCT i panTro5.chr12 C 0 C 0 s panPan2.chr12 125754821 150 + 135337776 AACCCCACAGTTCCCGAGATCCCAACACTGTCTGCACAGCACGTGGTCTTGGG---GGGC----GCTGACCTT-AACAAAGGAGCCAGCTACGACCAAGGCAGGTTCAGCGTGTGGCACACGTGTGCCGC-GTGCTTGCTGTGGAAAGGGTGAGCACCT i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8268399 150 - 8369578 AACCCCACAGTTCCCGAGATCCCAACACTGTCTGCACAGCACGTGGTCTTGGG---GGGC----GCTGACCTT-AACAAAGGAGCCAGCTACGACCAAGGCAGGTTCAGCGTGTGGCACGCGTGTGCCGC-GTGCTTGCTGTGGAACGGGTGAGCACCT i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97926342 150 + 106955855 AACCCCACAGTTCTCGAGATCCCAACATTGTCTGCACAGCACGTGGTCTTGGG---GGGC----GCTGACCTT-AACAAAGGAGCCAGCTACGACCAAGGCAGGTTCAGCGTGTGGCACGCGTGTGCCAC-GTGCTTGCTGTGGAAACGGCGAGCACCT i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124041478 148 + 133663169 AACCCCACAGTTCCTGAGATCCCAACACTGTCTGCACAGCACGTGGCCTTGGG---GGGC----GCTGACCTTAAACAAAGGAGCCAGCTAGGA-CAGCGCAGGTTCAGCATGTGGAA--CGTGTGCCGC-GTGCTTGCTGTGGAAAGGGTGAGCACCT i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128289669 148 + 137757926 AACCCCACAGTTCCTGAGATCCCAACACTGTCTGCACAGCACGTGGCCTTGGG---GGGC----GCTGACCTTAAACAAAGGAGCCAGCTAGGA-CAGCGCAGGTTCAGCATGTGGAA--CGTGTGCCGC-GTGCTTGCTGTGGAAAGGGTGAGCACCT i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10688155 147 - 16319837 AACCCCACAGTTCCTGAGATCCCAACACTGTCTGCACAGCACGTGGCCTTGGG---GGGC----GCTGACCTT-AACAAAGGAGCCAGCTAGGA-CAGGGCAGGTTCAGCATGTGGAA--CGTGTGCCGC-GTGCTTGCTGTGGAAAGGGTGAGCACCT i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12312054 147 + 20526591 AACCCCACAGTTCCTGAGATCCCAACACTGTCTGCACAGCACGTGGCCTTGGG---GGGC----GCTGACCTT-AACAAAGGAGCCAGCTAGGA-CAGGGCAGGTTCAGCATGTGGAA--CATGTGCCGC-GTACTTGCTGTGGAAAGGGTGAGCACCT i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119283826 147 + 128539186 AACCCCACAGTTCCTGAGATCCCAACACTGTCTGCACAGCACGTGGCCTTGGG---GGAC----GCTGACCTT-AACAAAGGAGCCAGCTACGA-CAGGGCAGGTTCAGCATGTGGAA--CGTGTGCCGC-GTGCTTGCTGTGGAAAGGGTGAGTACCT i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 634993 146 + 6255621 AA-CCCACAGTTCCTGAGATCCCAACACTGTCTGCACAGCACGTGGCCTTGCG---GGGC----GCTGACCTT-AACAAAGGAGCCAGCTAGGA-CAGGGCAGGTTCAGCATGTGGAA--CGTGTGCCGC-GTGCTTGCTGTGGAAAGGGTGAGCACCT i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4661496 147 - 8658521 AACCCCACAGTTCCTGAGATCCCAACACTGTCTGCACAGCACGTGGCCTTGGA---GGGC----GCTGACCTT-AACAAAGGAGCCAGCTACGA-CAGGGCAGGTTCAGCATGTGGAA--CGTGTGCCGC-GTGCTTGCTGTGGAAAGGGCGAGCACTT i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114867384 150 + 124281992 AACCCCACAGTTCCCAAGATCCCAACACTGTCTGCACAGCATGTGGCCTTGGG---GGGC----GCTGACCTT-AACAAAGGAACCAGCTTCGACCGAGGCAGCTTCAGCGTGTGGAGTGCATGTGCCGC-GTGCTTGCTGTGGAAAGGGCGAGCACCT i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 506631 150 - 9212255 AACCCCACAGTTCCCAAGATCCCAACACTGTCTACACAGCACGTGGCCTTGAG---GGGC----GCTGACCTT-AACAAAGGAGCCAGCTACGACTGAGGCAGCTTCAGCGTGTGGAGCACAGGGGCAGC-GTGCTTGCTGTGGAAAGGGCGAGCACCT i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2925615 150 + 4466143 AACCCCACAGTTCCCAAGATCCCAACATTATCTGCACAGCATGTGGCCTTGGG---CGGT----GCTGACCTT-AACAAAGGAGCCAGCTACGACCGAGGCAGCTTCAGTGTGTGGAGCGCATATGCCAC-GTGCTTGCTGTGGAAAGGGCGAGCACCT i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1628580 150 + 5364348 AACCCCACAGTTCCCAAGATCCCAACACTGTCTGCACAGCACGTGGCCTTGAG---GGGC----GCTGACCTT-AACAAAGGAGCCAGTTACGCCCGAGGCAGCTTCAGCGTGTGGAGCGCATGTGCCAC-GTGCTTGCTGTGGAAAGGGCGAGCACCT i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4349022 107 + 7922563 AGCCCCACGGGCCCTGAGGTCCCAGCATTGTGTATGCAGCACGTGGCCTCGAG---AATC----ACCAGCCAG-AACAAAG------------------GCAGGTTCTGAGAGTGAGCCTCCTGAGCCAC-ATG------------------------- i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33196593 137 - 38964690 GACCCCAGGGTTCAGGAGAGCCCA-TGTCACCTGGCCAGCATGTGGTCTGGAGGCAGGAC----ACTGACTCT-AATGCAGGATCCAGCCAGGC-CAAGG-------GGCAGAGGGGG--CAGGC-CAGT-GTG-TTCCTGTGAGAAG---GAGCCCCC i canFam3.chr26 C 0 C 0 s dasNov3.JH568189 890034 149 - 1116856 AATTCCACAGTTCCTGAGATCCAAATATGGTCTGGTGGGTGTGTGGTCATGGG---AGGCTGCTGCTGACCTC-GCCAGAGGAGCCAAGTGTGC-AAAGGTGAGCGCAGCCGGGGAAG--TGTGAAGAGCTGCGCTAGATGGGGAAGGAGC---TGCCT i dasNov3.JH568189 I 648 C 0 e proCoq1.NW_012154285v1 6763896 886 - 9870158 I a score=65263.000000 s hg38.chr12_KI270834v1_alt 119076 4 + 119498 TCTG s panTro5.chr12 127404668 4 + 137163284 TCTG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125754971 4 + 135337776 TCTG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8268549 4 - 8369578 TCTG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97926492 4 + 106955855 TCTG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124041626 4 + 133663169 TCTG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128289817 4 + 137757926 TCTG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10688302 4 - 16319837 TCTG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12312201 4 + 20526591 TCTG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119283973 4 + 128539186 TCTG i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 635139 4 + 6255621 TCTG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4661643 4 - 8658521 TCTG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114867534 4 + 124281992 TCTG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 506781 4 - 9212255 TCTG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2925765 4 + 4466143 TCTG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1628730 2 + 5364348 --TG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6764782 4 - 9870158 TCTG i proCoq1.NW_012154285v1 I 886 C 0 s otoGar3.GL873618 4349129 3 + 7922563 -CTG i otoGar3.GL873618 C 0 C 0 s canFam3.chr26 33196730 4 - 38964690 TCTG i canFam3.chr26 C 0 N 0 s dasNov3.JH568189 890183 4 - 1116856 TCTG i dasNov3.JH568189 C 0 C 0 a score=818485.000000 s hg38.chr12_KI270834v1_alt 119080 65 + 119498 ACCTTGCCCT-TCCCTCACAAAGCAGAACGCTTGAAAGCGGAACAGCCTCAGCGTCAAAGGAAGGA s panTro5.chr12 127404672 65 + 137163284 ACCTTGCCCT-TCCCTCACAAAGCAGAACGCTTGAAAGCGGAACAGCCTCAGCGTCAAAGGAAGGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125754975 65 + 135337776 ACCTTGCCCT-TCCCTCACAAAGCAGAACGCTTGAAAGCGGAACAGCCTCAGCGTCAAAGGAAGGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8268553 65 - 8369578 ACCTTGCCCT-TCCCTCACAAAGCAGAACGCTTGAAAGCGGAACAGCCTCAGCGTCAAAGGAAGGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97926496 65 + 106955855 ACCTTGCCCT-TCCCTCACAAAGCAGAACGCTTGAAAGTGGAACAGCCTCAGCGTCAAAGGAAGGA i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124041630 65 + 133663169 ACCTTGCCCG-TCCCTCACAAAGCAGAACGCTTGAAAGCCGAACAGCCTCAGCGTCAAAGGAAGGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128289821 65 + 137757926 ACCTTGCCCG-TCCCTCACAAAGCAGAACGCTTGAAAGCCGAACAGCCTCAGCGTCAAAGGAAGGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10688306 65 - 16319837 ACCTTGCCCG-TCCCTCACAAAGCAGAACGCTTGAAAGCCGAACAGCCTCAGCGTCAAAGGAAGGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12312205 65 + 20526591 ACCTTGCCCA-TCCCTCACAAACCAGAACGCCTGAAAGCGGAACAGCCTCAGCGTCAAAGGAAGGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119283977 65 + 128539186 ACCTTGCCCG-TCCCTCACAAAGCAGAACGCTTAAAAGCGGAACAGCCTCAGCGTCAAAGGAAGGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 635143 65 + 6255621 ACCTTGCCCG-TCCCTCACAAAGCAGAACGCTTGAAAGCGGAACAGCCTCAGCGTCAAAGGAAGGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4661647 65 - 8658521 ACCTTGCCTG-TCCCTCACAAAGCAGAACGCTTGAAAGCAGAACAGCCTCAGTGTCAAAGGAAGGC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114867538 65 + 124281992 ACCTTGCCGT-TCCCTCACAAAGCAGAATGCTTGAAAGCAGAACAGCCTAAGCGTCAAAGGAAGGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 506785 65 - 9212255 ACCTTGCTGT-TCCCTCACAAAGCAGAAAGCTTGAAAGCAGAACAGCCTCAGCGTCAAAGGAAGGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2925769 65 + 4466143 ACCTTGCCGT-TCCCTCACAAAGCAGAATGCTTGAAAGCAGAACAGCCTCAGCGTCAAAGGAAGGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1628732 65 + 5364348 ACCTTGCCAT-TCCCTCACAAAGCAGAATGCTTGAAAGCAAAACAGCCTCAGTGTCAAAGGAAGGA i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6764786 64 - 9870158 ACCTTGCCCT-TCCCTCGCAAACCGCAATGCTTGGAAGCTGAACAGCCTCGC-GCCAAAGGAAGGA i proCoq1.NW_012154285v1 C 0 I 175 s otoGar3.GL873618 4349132 51 + 7922563 ACCTTACCCT-TCCCTAACAAAGCAGAATGCGTAGAAGCTGAATAGCCACAG-------------- i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 890187 64 - 1116856 CCCCGGCTCTGTCTCTCACAAAGCAGAACCCTTGGAAGGGGGACAGAC--AGCATCCAACGAAGGC i dasNov3.JH568189 C 0 C 0 a score=1903817.000000 s hg38.chr12_KI270834v1_alt 119145 177 + 119498 -AAATCCCAGGAGCGCC-TGAGAG----CTGT--CAGTAGCGGTGCCTACGTTTTCCTTCCACTCAGCAATCCGGAGTCGTTCACTCTGGCATCAATTCCAGCACCTCACCTGGAGGCTGAATCCCGAAGAGCTGAAAGGGG-TTTGGAAGTGGGAACTCTAGCAGAGATG-----------CTTTCAAAGGACAGA s panTro5.chr12 127404737 177 + 137163284 -AAATCCCAGGAGCGCC-TGAGAG----CTGT--CAGTAGCGGTGCCTACGTCTTCCTTCCACTCAGCAATCCGGAGTCGTTCACTCTGGCATCAATTCCAGCACCTCACCTGGAGGCTGAATCCCGAAGAGCTGAAAGGGG-TTTGGAAGTGGGAACTCTAGCAGAGGTG-----------CTTTCAAAGGACAGA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125755040 177 + 135337776 -AAATCCCAGGAGCACC-TGAGAG----CTGT--CAGTAGCGGTGCCTACGTTTTCCTTCCACTCAGCAATCCGGAGTCGTTCACTCTGGCATCAATTCCAGCACCTCACCTGGAGGCTGAATCCCGAAGAGCTGAAAGGGG-TTTGGAAGTGGGAACTCTAGCAGAGGTG-----------CTTTCAAAGGACAGA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8268618 177 - 8369578 -AAATCCCAGGAGCGCC-TGAGAG----CTGT--CAGTAGCGGTGCCTACGTTTTCCTTCCACTCAGCAATCCGGAGTCGTTCACTCTGGCATCAATTCCAGCACCTCACCTGGAGGCTGAATCCCGAAGAGCTGAAAGGGG-TTTGGAAGTCGGAACTCTAGCAGAGGTG-----------CTTTCAAAGGACAGA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97926561 174 + 106955855 -AAATCCCAGGAGCGCC-TGCGAG----CTGT--CAGTAGCGG---CTACCTTTTCCTTCGACTCAGCAATCCGGAGTCATTCACTCTGGCATCAATTCCAGCACCTCACCTGGAGGCTGAATCCTGAAGAGCTGAAAGGGG-TTTGGAAGTGGGAACTCTAGCAGAGGTG-----------CTTTCAAAGGACAGC i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124041695 188 + 133663169 -AAATCCCAGGAGCGCC-TGAGAG----CTGT--CAGTAGCGGTGCCTACGTTTTCCTTCGACTGAGCAATCCAGAGTCATTCACTCTGGCATCAATTCCAGCACCTCACCTGGAGGCTGAATCCTGAAGAGCTGAAAGGGG-TTTGGAAGTGGGAACTCTAGCAGAGCTGCCTGACCACTACTTTCAAAGGACAGA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128289886 188 + 137757926 -AAATCCCAGGAGCGCC-TGAGAG----CTGT--CAGTAGCGGTGCCTACGTTTTCCTTCGACTGAGCAATCCAGAGTCATTCACTCTGGCATCAATTCCAGCACCTCACCTGGAGGCTGAATCCTGAAGAGCTGAAAGGGG-TTTGGAAGTGGGAACTCTAGCAGAGCTGCCTGACCACTACTTTCAAAGGACAGA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10688371 188 - 16319837 -AAATCCCAGGAGCGCC-TGAGAG----CTGT--CAGTAGCGGTGCCTACGTTTTCCTTCGACTGAGCAATCCAGAGTCATTCACTCTGGCATCAATTCCAGCACCTCACCTGGAGGCTGAATCCTGAAGAGCTGAAAGGGG-TTTGGAAGTGGGAACTCTAGCAGAGCTGCCTGACCACTACTTTCAAAGGACAGA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12312270 188 + 20526591 -AAATCCCAGGAGCGCC-TGAGAG----CTGT--CAGTAGCGGTGCCTACGTCTTCCTTCGACTCAGCAATCCGGAGTCATTCACTCTGGCATCAATTCCAGCACCTCACCTGGAGGCTGAATCCTGAAGAGCTGAAAGGGG-TTTGGAAGTGGGAACTCTAGCAGAGCTGCCTCACCACTACTTTCAAAGGACAGA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119284042 188 + 128539186 -AAATCCCAGGAGCGCC-TGAGAG----CTGT--CAGTAGCGGTGTCTACGTTTTCCTTCGACTCAGCAATCTGGAGTCATTCACTCTGGCATCAATTCCAGCACCTCACCTGGAGGCTGAATCCCGAAAAGCTGAAAGGGG-TTTGGAAGTGGGAACTCTAGCAGAGCTGCCTGACCACTACTTTCAAAGGACAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 635208 188 + 6255621 -AAATCCCAGCAGCGCC-TGAGAG----CTGT--CAGTAGCGGTGCCTACGTCTTCCTTCGACTCAGCAATCCGGAGTCATTCACTCTGGCATCAATTCCAGCACCTCACCTGGAGGCTGAATCCCGAAGAGCTGAAAGGGG-TTTGGAAGTGGGAACTCTACCAGAGCTGCCTGACCACTACTTTCAAAGGACAGA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4661712 188 - 8658521 -AAATCCCAGGAGTGCC-TGAGAG----CTGT--CAGTAGCGGTGCCTACGTTTTCCTTCGACTCAGCAGTCCGGAGTCATCCACTCTGGCATCAATTCGAGCACCTCACCTGGAGGCTGAATCCCGAAGAGCTGAAAGGGG-TTTGGAAGTGGGAACTCTAGCAGAGCTGCCTGACCACTACTTTCAAAGGACAGA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114867603 189 + 124281992 -AAATCCCAGGAGTGCTGTGAGAG----CTGT--CAGTAGTGGTGCCTACGTTTTTCTTCAACTCAGCAACCCAGAGTCGTTCACTCCGCCATCAATTCCAGCACCTCACTTGGAGGGTGAATCCAGAAGAGCTGAAAAGGG-TTTGGAATCGGGAACTCCGGCAGAGGTGCCTGGCCACTACTTTCAAAGGACAGA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 506850 193 - 9212255 -GAATCCCAGGAGCGCGGTGAGCGCTGTCTGT--CAGTAGCGGTGCCTATGTCTTCCTTCAACTCAGCAACCCAGAGTCGTTCACTCTGCCATCAATTCCAGCACCTCACCTGGAGGGTGAATCCCGAAGAGCTGAAAAGGG-TCTGGAATCGGGAACTCCGGCAGAGGTGCCTGGCCACTACTTTCAAATGACAGA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2925834 189 + 4466143 -AAATCCCAGGAGCGCTGTGAGAG----CTGT--CAGTAGTGGTGCCTACGTTTTCCTTCAACTCAGCAACCCAGAGTCATTCACTCCGCCATCAATTCCTGCACCTCACCTGGAGGGTGAATCCCGAAGAGCTGAAAAGGG-TTTGGAATCAGGAACTCCGGCAGAGGTGCCTGGCCACTACTTTCAAAGGACAGA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1628797 189 + 5364348 -AAATCCCAGGAGCGCTGTGAGAG----CTGT--CCGTAGTGGTGCCTACGTTTTCCTTCAACTCAGCAACCCAGAGTCGTTCACTCCGCCATCAATTCCAGCACCTCACCTAGAGGGTGAATCCCGAAGAGCTGAAAAGGG-TTTGGAATCGGGAACTCCAGCAGAGGTGCCTGGCCACTACTTTCAAAGGACAGA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4349183 152 + 7922563 -----TCCAGGG------TGCTAC----CTGTGCCTTCAGCACTGTCCACGCTTGACCTCCACTCAGCAAC--------------------------GCCAGCATCTCACCTGGGATGCGGATCCT-CAGAGCTGAGGGGGA-TTTGGAAGT-GGAACTCCAGATGAGTTGCCTGG-CAATATTTTAAAAGGACAGC i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 890251 174 - 1116856 AAGACCCCAGA-----C-TGTGTC----CTGA--TCTT----GTACAGAGATATTC------CTCAGCAACTCTGAATAGTTCACTGTGG-GTCAATTTCATCGTCTCACCTGAAACATTAATTCCCAGGACCTAAAATGGGTTTTGGGCGTGAGGACTGGAGATGAGATGCCTTGCCATTACTTTAAAAGGATAGA i dasNov3.JH568189 C 0 C 0 e proCoq1.NW_012154285v1 6764850 175 - 9870158 I a score=1425653.000000 s hg38.chr12_KI270834v1_alt 119322 120 + 119498 CTCAAATCCAGGA----TTCTGTTGGCTGATGGAAGAAGCAGAGCCCATATGTTAGTGG-CTTGCTGTCAAAGAGAAAGAACCATT-TAAATGTGATCCAGAATTTAGTGGGTCTTGGATGACAGG s panTro5.chr12 127404914 120 + 137163284 CTCAAATCCAGGA----TTCTGTTGGCTGATGGAAGAAGCAGAGCCCATATGTTAGTGG-CTTGCTGTCAAAGAGAAAGAACCATT-TAAATGTGATCCAGAATTTAGTGGGTCTTGGATGACAGG i panTro5.chr12 C 0 C 0 s panPan2.chr12 125755217 120 + 135337776 CTCAAATCCAGGA----TTCTGTTGGCTGATGTAAGAAGCAGAGCCCATATGTTAGTGG-CTTGCTGTCAAAGAGAAAGAACCATT-TAAATGTGATCCAGAATTTAGTGGGTCTTGGATGACAGG i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8268795 118 - 8369578 CTCAAATCCAGGA----TTCTGTTGGCTGATGGAAGCAGCAGAGCCC--ATGTTAGTGG-CTTGCTGTCAAAGAGAAAGAACCATT-TAAATGTGATCCAGAATTTAGTGGGTCTTGGATGACAGG i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97926735 120 + 106955855 CTCAAATCCAGGA----TTCTGTTGGCTGATGGAAGAAGCAGAGCCCATATGTTAGTGG-CTTGCTGTCAAAGAGAAAGAACCATT-TAAATGTGATCCAGAATTTAGTGGGTCTTGGATGACAGG i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124041883 120 + 133663169 CTCAAATCCAGGA----TTCTGTTGGCTGATGGAAGAAGCAGAGCCCATGTGTTAGTGG-CTTGCTGTCAAAGAGAAAGAACCATT-TAAATGTGATCCAGAATTTAGTGGGTCTTAGATGACAGG i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128290074 120 + 137757926 CTCAAATCCAGGA----TTCTGTTGGCTGATGGAAGAAGCAGAGCCCATGTGTTAGTGG-CTTGCTGTCAAAGAGAAAGAACCATT-TAAATGTGATCCAGAATTTAGTGGGTCTCAGATGACAGG i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10688559 120 - 16319837 CTCAAATCCAGGA----TTCTGTTGGCTGATGGAAGAAGCAGAGCCCATGTGTTAGTGG-CTTGCTGTCAAAGAGAAAGAACCATT-TAAATGTGATCCAGAATTTAGTGGGTCTCAGATGACAGG i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12312458 120 + 20526591 CTCAAATCCAGGA----TTCTGTTGGCTGATGGAAGAAGCAGAGCCCATGTGTTAGTGG-CTTGCTGTCAAAGAGAAAGAACCATT-TAAATGTGATCCAGAATTTAGTGGGTCTCAGATGACAGG i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119284230 120 + 128539186 CTCAAATCCAGGA----TTCTGTTGGCTGATGGAAGAAGCAGAGCCCATGTGTTAGTGG-CTTGCTGTCAAAGAGAAAGAACCATT-TAAATGTGATCCAGAATTTAGTGGGTCTCAGATGACAGA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 635396 120 + 6255621 CTCAAATCCAGGA----TTCTGTTGGCTGATGGAAGGAGCAGAGCCCATGTGTTAGTGG-CTTGCTGTCAAAGAGAAAGAACCATT-TAAATGTGATCCAGAATTTAGTGGGTCTCAGATGACAGG i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4661900 100 - 8658521 CTCAAATCCAGGA----TTCTGTTGGCTGATGGAAGAAGCAGAGCCCATGT---------------------GAGAAAGAACCACT-GAAATGTGATCCAGAATTTAGTAGGTCTCAGATGACAGG i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114867792 125 + 124281992 CTCAAATCCAAGATTCTTTCTGTTGGCTGATGGAAGAAGCAGAGCCCATATTTTAGTGG-CTTGCTGGCAAAGAGAGAGAACCATTGTCAGTGTGACCCAGAATTGAGTGGGTCTCGGATGACAGG i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 507043 115 - 9212255 CTCAAATC-------CTTTCTGTTGACTGATGGAAGAAGCAGAGCCCCTATTTTAGTGG-CTTGCTGTC--AGAGAGAGAACCATT-TCAATGTGACCCAGAATTGAGTGGGTCTCGGATGACAGG i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2926023 124 + 4466143 CTAAAATCCAAGATTCTTTCTGTTGGCTGATGGAAGAAGCAGAGCCCATATTTTAGTGG-CTTGCTGTCAAAGAGAGAGAACCATT-TCAATGTGACCCAGAATTGAGTGGGTCTCGGATGACAGG i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1628986 124 + 5364348 CTCAACTCCAAGATTCTTTCTGTTGGCTGATGGAAGACGCAGAGCCCATATTTTAGTGG-CTTGCTGTCAAAGAGAGAGAACCATT-TCAATGTGACCCAGAATTGAGTGGGTCTCGGATGACAGG i aotNan1.NW_018491581v1 C 0 C 0 s proCoq1.NW_012154285v1 6765025 120 - 9870158 CTCAAATCCGAGA----TTCTGTTGGTTAGTGGGAAATGCAGAGCCCATGTTTTAGGGG-CTTGCCATTGAAGAGAAACAACAATT-TAAATTTGATCCAGAACTTAGTGGGTCTAGGAGGACAGG i proCoq1.NW_012154285v1 I 175 N 0 s otoGar3.GL873618 4349335 117 + 7922563 CTCGAATCTGAGG----TTCTGCTGGTTAATAGGAAAAGCAGAGCCCATATTTTAGCAG-CTTGTCGGTGAAGACTGAGGACAATT-TGACTTTAATCTGGAACATAGCAGGTCCAGGAGGAC--- i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 890425 117 - 1116856 ---CAACCTGAGA----ATCTG-TGGTTAATGGAAAAAGCAGAGCCCATATTTTTATAACCTTGACATTGAAGAGAAAGAACAATT-TGAACTTGACCCAGAACTTCGTAGGTATAGAATGATGAA i dasNov3.JH568189 C 0 C 0 a score=391124.000000 s hg38.chr12_KI270834v1_alt 119442 48 + 119498 AGAGCTGCCCTAGGCCTAG---TGTCCT------ACCCC-TCACAAGCACTGTCCCCA s panTro5.chr12 127405034 48 + 137163284 AGAGCTGCCCTAGGCCTAG---TGTCCT------ACCCC-TCACAAGCACTGTCCCCA i panTro5.chr12 C 0 C 0 s panPan2.chr12 125755337 48 + 135337776 AGAGCTGCCCTAGGCCTAG---TGTCCT------ACCCC-TCACAAGCACTGTCCCCA i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8268913 48 - 8369578 AGAGCTGCCCTAGGCCTAG---TGTCCT------ACCCC-TCACAAGCACTGTCCCCA i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97926855 48 + 106955855 AGAGCTACCCTAGGCCTAG---CGTCCT------ACCCC-TCATAAGCGCTGTCCcca i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124042003 48 + 133663169 AGAGCTGCCCTAGGCCTAG---CGTCCT------ACCTC-TCACAAACGCTGTCCCCA i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128290194 48 + 137757926 AGAGCTGCCCTAGGCCTAG---CGTCCT------ACCTC-TCACAAACGCTGTCCCCA i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10688679 48 - 16319837 AGAGCTGCCCTAGGCCTAG---CGTCCT------ACCTG-TCACAAACGCTGTCCCCA i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12312578 48 + 20526591 AGAGCTGCCCTAGACCTAG---CGTCCT------ACCTC-TCACAAACGCTGTCCCCA i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119284350 48 + 128539186 AGAGCTGCCCTAGGCCTAG---CGTCCT------ACCTC-TCACAAACGCTGTCCCCA i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 635516 48 + 6255621 AGAGCTGCCCTAGGCCTAG---CGTCCT------ACCTC-TCACAAACGCTGTCCCCA i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4662000 51 - 8658521 AGAGCTGCCCTAGGCCTAGCGTCGTCCT------ACCTC-TCACAAACGCTGTCCCCA i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114867917 48 + 124281992 AGGACTGCCCTAGG--TAGGACTGTCCT-------CCCC-TCACAAGTGTTGTCCCCA i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 507158 33 - 9212255 -----------------AGGACTGTCCC-------CCCC-TTACCAGTGCTGTCCCCA i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2926147 48 + 4466143 AGGACTGCCCTAGG--TAGGACTGTCCT-------CCCC-TCACAAGTGCTGTCCCCA i cebCap1.NW_016107484v1 C 0 C 0 s aotNan1.NW_018491581v1 1629110 48 + 5364348 AGGACTGCCCTAGG--TAGGACTGTCCT-------CCCC-TCACAAGTGCTGTCCCCA i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4349452 38 + 7922563 -----------AGGTCTAG---CACCTC------ACCCCTTCTCCAACATTCTCCCCA i otoGar3.GL873618 C 0 C 0 s dasNov3.JH568189 890542 48 - 1116856 -----TGACC-AGAGCTAG---GAATCTAGAGGGAcccc-tctcaggaagtgctctca i dasNov3.JH568189 C 0 N 0 a score=53225.000000 s hg38.chr12_KI270834v1_alt 119490 5 + 119498 GCTGC s panTro5.chr12 127405082 5 + 137163284 GCTGC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125755385 5 + 135337776 GCTGC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8268961 5 - 8369578 GCTGC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97926903 5 + 106955855 gttgc i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124042051 5 + 133663169 GCTAC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128290242 5 + 137757926 GCTAC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10688727 5 - 16319837 GCTAC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12312626 5 + 20526591 GCTAC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119284398 5 + 128539186 GCTAC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 635564 5 + 6255621 GCTAC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4662051 5 - 8658521 GCTAC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114867965 5 + 124281992 GCTGC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 507191 5 - 9212255 GCTGC i saiBol1.JH378194 C 0 C 0 s cebCap1.NW_016107484v1 2926195 5 + 4466143 GCTGC i cebCap1.NW_016107484v1 C 0 N 0 s aotNan1.NW_018491581v1 1629158 5 + 5364348 GCTGC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4349490 5 + 7922563 GCTGT i otoGar3.GL873618 C 0 C 0 a score=21090.000000 s hg38.chr12_KI270834v1_alt 119495 2 + 119498 AC s panTro5.chr12 127405087 2 + 137163284 AC i panTro5.chr12 C 0 C 0 s panPan2.chr12 125755390 2 + 135337776 AC i panPan2.chr12 C 0 C 0 s gorGor5.CYUI01015152v1 8268966 2 - 8369578 AC i gorGor5.CYUI01015152v1 C 0 C 0 s nomLeu3.chr10 97926908 2 + 106955855 ac i nomLeu3.chr10 C 0 C 0 s rheMac8.chr11 124042056 2 + 133663169 AC i rheMac8.chr11 C 0 C 0 s macFas5.chr11 128290247 2 + 137757926 AC i macFas5.chr11 C 0 C 0 s macNem1.NW_012010578v1 10688732 2 - 16319837 AC i macNem1.NW_012010578v1 C 0 C 0 s cerAty1.NW_012001186v1 12312631 2 + 20526591 AC i cerAty1.NW_012001186v1 C 0 C 0 s chlSab2.chr11 119284403 2 + 128539186 AC i chlSab2.chr11 C 0 C 0 s manLeu1.NW_012103587v1 635569 2 + 6255621 AC i manLeu1.NW_012103587v1 C 0 C 0 s colAng1.NW_012116043v1 4662056 2 - 8658521 AC i colAng1.NW_012116043v1 C 0 C 0 s calJac3.chr9 114867970 2 + 124281992 AC i calJac3.chr9 C 0 C 0 s saiBol1.JH378194 507196 2 - 9212255 AC i saiBol1.JH378194 C 0 N 0 s aotNan1.NW_018491581v1 1629163 2 + 5364348 AC i aotNan1.NW_018491581v1 C 0 C 0 s otoGar3.GL873618 4349495 2 + 7922563 GC i otoGar3.GL873618 C 0 N 0 a score=8281.000000 s hg38.chr12_KI270834v1_alt 119497 1 + 119498 A s panTro5.chr12 127405089 1 + 137163284 A i panTro5.chr12 C 0 N 0 s panPan2.chr12 125755392 1 + 135337776 A i panPan2.chr12 C 0 N 0 s gorGor5.CYUI01015152v1 8268968 1 - 8369578 A i gorGor5.CYUI01015152v1 C 0 N 0 s nomLeu3.chr10 97926910 1 + 106955855 a i nomLeu3.chr10 C 0 N 0 s rheMac8.chr11 124042058 1 + 133663169 A i rheMac8.chr11 C 0 N 0 s macFas5.chr11 128290249 1 + 137757926 A i macFas5.chr11 C 0 N 0 s macNem1.NW_012010578v1 10688734 1 - 16319837 A i macNem1.NW_012010578v1 C 0 N 0 s cerAty1.NW_012001186v1 12312633 1 + 20526591 A i cerAty1.NW_012001186v1 C 0 N 0 s chlSab2.chr11 119284405 1 + 128539186 A i chlSab2.chr11 C 0 N 0 s manLeu1.NW_012103587v1 635571 1 + 6255621 A i manLeu1.NW_012103587v1 C 0 N 0 s colAng1.NW_012116043v1 4662058 1 - 8658521 A i colAng1.NW_012116043v1 C 0 N 0 s calJac3.chr9 114867972 1 + 124281992 a i calJac3.chr9 C 0 N 0 s aotNan1.NW_018491581v1 1629165 1 + 5364348 A i aotNan1.NW_018491581v1 C 0 N 0